Query 040379
Match_columns 373
No_of_seqs 447 out of 3740
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 07:51:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040379.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040379hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.5E-40 3.2E-45 343.7 29.6 319 34-372 27-368 (968)
2 PLN00113 leucine-rich repeat r 100.0 6.9E-33 1.5E-37 286.7 21.2 270 95-372 150-440 (968)
3 KOG4194 Membrane glycoprotein 100.0 4.5E-30 9.8E-35 232.7 4.5 282 78-372 123-428 (873)
4 KOG4194 Membrane glycoprotein 99.9 2.4E-28 5.1E-33 221.6 7.2 277 81-373 79-378 (873)
5 KOG0444 Cytoskeletal regulator 99.9 3.5E-28 7.6E-33 222.3 -2.5 271 80-372 7-303 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 2.8E-26 6E-31 210.0 -5.9 254 101-372 95-351 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 1E-25 2.3E-30 196.2 -3.2 264 96-373 193-541 (565)
8 KOG0472 Leucine-rich repeat pr 99.9 2.2E-26 4.8E-31 200.3 -10.5 250 100-372 59-309 (565)
9 PRK15370 E3 ubiquitin-protein 99.9 1.5E-21 3.2E-26 191.6 18.8 226 110-373 200-428 (754)
10 PRK15387 E3 ubiquitin-protein 99.9 9E-21 1.9E-25 185.2 17.9 229 100-373 215-458 (788)
11 PLN03210 Resistant to P. syrin 99.8 1.8E-19 3.9E-24 188.0 22.2 104 262-370 779-903 (1153)
12 cd00116 LRR_RI Leucine-rich re 99.8 6.8E-22 1.5E-26 179.6 2.5 268 101-372 15-319 (319)
13 PLN03210 Resistant to P. syrin 99.8 3.9E-19 8.4E-24 185.5 21.3 246 80-347 611-904 (1153)
14 KOG0618 Serine/threonine phosp 99.8 5.4E-22 1.2E-26 189.2 -3.8 246 109-371 241-487 (1081)
15 KOG4237 Extracellular matrix p 99.8 4.5E-22 9.8E-27 173.3 -4.5 277 81-372 68-358 (498)
16 cd00116 LRR_RI Leucine-rich re 99.8 1.6E-20 3.4E-25 170.6 4.2 259 113-373 2-291 (319)
17 PRK15387 E3 ubiquitin-protein 99.8 7.1E-19 1.5E-23 172.0 15.4 226 81-356 223-465 (788)
18 PRK15370 E3 ubiquitin-protein 99.8 1.7E-18 3.6E-23 170.2 13.7 300 28-373 55-401 (754)
19 KOG0618 Serine/threonine phosp 99.8 9.6E-21 2.1E-25 180.8 -2.5 267 81-370 242-510 (1081)
20 KOG4237 Extracellular matrix p 99.7 4.1E-19 8.8E-24 155.0 -4.7 254 110-373 68-335 (498)
21 KOG0617 Ras suppressor protein 99.7 2.9E-19 6.3E-24 139.0 -5.7 180 132-348 31-211 (264)
22 KOG0617 Ras suppressor protein 99.7 1.7E-18 3.7E-23 134.7 -4.2 165 105-282 29-193 (264)
23 PLN03150 hypothetical protein; 99.6 1.7E-14 3.8E-19 141.2 13.5 151 31-194 367-526 (623)
24 KOG3207 Beta-tubulin folding c 99.4 2.1E-14 4.6E-19 127.4 1.8 212 132-351 119-341 (505)
25 KOG3207 Beta-tubulin folding c 99.4 2.2E-14 4.8E-19 127.3 0.7 214 106-323 118-340 (505)
26 KOG0532 Leucine-rich repeat (L 99.4 2.1E-14 4.5E-19 131.3 -3.3 176 157-351 74-249 (722)
27 KOG1909 Ran GTPase-activating 99.4 1.6E-13 3.5E-18 118.7 2.2 94 103-197 24-134 (382)
28 KOG0532 Leucine-rich repeat (L 99.4 3.2E-14 6.9E-19 130.1 -2.5 196 107-320 73-271 (722)
29 PF14580 LRR_9: Leucine-rich r 99.3 6.6E-13 1.4E-17 107.5 3.5 125 236-367 19-147 (175)
30 KOG1909 Ran GTPase-activating 99.3 1.7E-13 3.7E-18 118.5 -1.3 168 80-249 30-226 (382)
31 KOG1259 Nischarin, modulator o 99.3 8.1E-13 1.8E-17 112.2 1.8 127 236-372 284-411 (490)
32 COG4886 Leucine-rich repeat (L 99.3 8.2E-12 1.8E-16 116.8 8.5 201 137-356 96-297 (394)
33 COG4886 Leucine-rich repeat (L 99.3 1.1E-11 2.4E-16 115.9 9.0 200 113-329 97-297 (394)
34 PLN03150 hypothetical protein; 99.3 1.6E-11 3.5E-16 120.5 8.9 106 263-371 420-526 (623)
35 PF14580 LRR_9: Leucine-rich r 99.1 8.3E-11 1.8E-15 95.3 5.7 62 236-298 64-126 (175)
36 KOG1259 Nischarin, modulator o 99.1 3.1E-11 6.7E-16 102.7 2.3 207 100-324 205-414 (490)
37 KOG2982 Uncharacterized conser 99.1 9.3E-11 2E-15 99.7 3.6 203 160-367 47-286 (418)
38 KOG0531 Protein phosphatase 1, 99.0 1.4E-11 2.9E-16 115.7 -2.1 197 107-322 70-268 (414)
39 KOG4658 Apoptotic ATPase [Sign 98.9 5E-10 1.1E-14 112.6 2.5 110 105-217 567-676 (889)
40 PF13855 LRR_8: Leucine rich r 98.9 9.8E-10 2.1E-14 73.3 2.8 61 309-372 1-61 (61)
41 KOG2120 SCF ubiquitin ligase, 98.9 3.8E-11 8.3E-16 102.0 -5.1 181 159-346 186-373 (419)
42 PF13855 LRR_8: Leucine rich r 98.9 1.7E-09 3.6E-14 72.2 3.2 58 263-320 3-60 (61)
43 KOG0531 Protein phosphatase 1, 98.9 3.5E-10 7.7E-15 106.2 -0.2 232 103-353 89-322 (414)
44 KOG2120 SCF ubiquitin ligase, 98.9 1.9E-11 4.1E-16 103.9 -7.9 180 135-319 186-373 (419)
45 KOG4658 Apoptotic ATPase [Sign 98.8 1.9E-09 4.2E-14 108.5 3.8 184 107-299 543-731 (889)
46 KOG4341 F-box protein containi 98.6 1.1E-09 2.3E-14 97.4 -5.0 286 80-371 138-437 (483)
47 COG5238 RNA1 Ran GTPase-activa 98.6 6.6E-09 1.4E-13 87.5 -0.2 167 81-249 31-227 (388)
48 KOG2982 Uncharacterized conser 98.6 9.9E-09 2.2E-13 87.6 0.6 185 133-322 70-262 (418)
49 KOG1859 Leucine-rich repeat pr 98.6 1.7E-09 3.8E-14 102.3 -4.6 127 236-372 164-291 (1096)
50 PF08263 LRRNT_2: Leucine rich 98.6 1.1E-07 2.5E-12 58.1 4.6 41 35-76 2-43 (43)
51 COG5238 RNA1 Ran GTPase-activa 98.5 4.2E-08 9.2E-13 82.7 2.4 94 104-197 25-134 (388)
52 KOG1644 U2-associated snRNP A' 98.4 3.8E-07 8.2E-12 73.8 5.1 125 239-369 22-149 (233)
53 KOG4579 Leucine-rich repeat (L 98.4 1.3E-08 2.8E-13 77.0 -3.1 136 211-354 29-164 (177)
54 KOG1859 Leucine-rich repeat pr 98.4 8.8E-09 1.9E-13 97.7 -5.7 127 135-273 165-291 (1096)
55 KOG4579 Leucine-rich repeat (L 98.2 7.1E-08 1.5E-12 73.1 -2.4 137 184-327 28-164 (177)
56 KOG3665 ZYG-1-like serine/thre 98.2 1.9E-06 4.2E-11 85.0 4.7 140 209-352 122-266 (699)
57 KOG3665 ZYG-1-like serine/thre 98.1 8.1E-07 1.8E-11 87.6 0.9 155 108-269 121-283 (699)
58 PF12799 LRR_4: Leucine Rich r 98.1 3.7E-06 7.9E-11 51.5 3.2 39 309-351 1-39 (44)
59 KOG1644 U2-associated snRNP A' 98.1 5.5E-06 1.2E-10 67.2 5.0 106 109-217 42-148 (233)
60 PF12799 LRR_4: Leucine Rich r 98.0 5.8E-06 1.2E-10 50.6 3.6 37 285-322 1-37 (44)
61 KOG4341 F-box protein containi 98.0 2.6E-07 5.7E-12 82.5 -3.8 256 107-366 188-458 (483)
62 PRK15386 type III secretion pr 97.9 3.7E-05 7.9E-10 70.4 7.7 138 154-320 48-188 (426)
63 KOG2739 Leucine-rich acidic nu 97.9 6.2E-06 1.3E-10 69.6 2.5 112 104-218 38-152 (260)
64 PRK15386 type III secretion pr 97.9 4.6E-05 1E-09 69.8 8.2 138 104-271 47-187 (426)
65 KOG2739 Leucine-rich acidic nu 97.7 1.4E-05 3E-10 67.5 1.0 101 263-367 45-150 (260)
66 KOG2123 Uncharacterized conser 97.6 5.3E-06 1.1E-10 70.6 -2.5 100 261-366 19-123 (388)
67 KOG2123 Uncharacterized conser 97.4 3.2E-06 6.9E-11 71.9 -6.7 103 108-215 18-123 (388)
68 KOG1947 Leucine rich repeat pr 97.3 3.4E-05 7.4E-10 74.1 -1.5 115 107-222 186-308 (482)
69 KOG1947 Leucine rich repeat pr 97.0 0.00012 2.7E-09 70.2 -1.2 181 182-362 187-389 (482)
70 PF13306 LRR_5: Leucine rich r 96.9 0.003 6.5E-08 48.8 6.1 12 155-166 9-20 (129)
71 KOG4308 LRR-containing protein 96.7 1.9E-05 4.1E-10 74.7 -8.9 193 158-350 87-304 (478)
72 PF13306 LRR_5: Leucine rich r 96.5 0.0079 1.7E-07 46.3 6.2 13 305-317 77-89 (129)
73 KOG4308 LRR-containing protein 95.9 6.9E-05 1.5E-09 71.0 -10.0 214 135-348 88-330 (478)
74 PF00560 LRR_1: Leucine Rich R 95.8 0.0041 8.8E-08 31.6 0.9 21 135-156 1-21 (22)
75 PF00560 LRR_1: Leucine Rich R 95.3 0.0069 1.5E-07 30.7 0.7 12 338-349 2-13 (22)
76 KOG3864 Uncharacterized conser 94.6 0.0056 1.2E-07 50.1 -1.3 83 263-348 103-188 (221)
77 KOG3864 Uncharacterized conser 94.3 0.0076 1.6E-07 49.4 -1.2 81 237-318 102-185 (221)
78 PF13504 LRR_7: Leucine rich r 93.4 0.055 1.2E-06 25.4 1.3 12 135-146 2-13 (17)
79 PF13516 LRR_6: Leucine Rich r 92.3 0.055 1.2E-06 27.9 0.6 13 310-322 3-15 (24)
80 PF13516 LRR_6: Leucine Rich r 91.6 0.044 9.5E-07 28.3 -0.3 22 335-356 1-22 (24)
81 smart00370 LRR Leucine-rich re 90.5 0.29 6.3E-06 25.7 2.3 21 236-257 2-22 (26)
82 smart00369 LRR_TYP Leucine-ric 90.5 0.29 6.3E-06 25.7 2.3 21 236-257 2-22 (26)
83 smart00369 LRR_TYP Leucine-ric 89.7 0.32 6.9E-06 25.5 2.0 18 337-354 3-20 (26)
84 smart00370 LRR Leucine-rich re 89.7 0.32 6.9E-06 25.5 2.0 18 337-354 3-20 (26)
85 KOG0473 Leucine-rich repeat pr 87.1 0.0091 2E-07 50.1 -7.6 87 104-195 37-123 (326)
86 KOG0473 Leucine-rich repeat pr 84.2 0.031 6.8E-07 46.9 -5.8 82 262-349 43-124 (326)
87 KOG3763 mRNA export factor TAP 82.5 1.1 2.3E-05 42.8 2.7 70 181-251 216-285 (585)
88 smart00365 LRR_SD22 Leucine-ri 82.2 1.3 2.8E-05 23.4 1.9 12 361-372 3-14 (26)
89 smart00368 LRR_RI Leucine rich 79.5 1.7 3.7E-05 23.3 1.8 12 361-372 3-14 (28)
90 smart00364 LRR_BAC Leucine-ric 76.5 1.8 4E-05 22.8 1.3 17 135-152 3-19 (26)
91 KOG3763 mRNA export factor TAP 70.0 2.8 6E-05 40.1 1.8 82 282-366 215-307 (585)
92 PF07172 GRP: Glycine rich pro 69.8 3.6 7.7E-05 29.7 2.0 18 1-19 1-18 (95)
93 KOG4242 Predicted myosin-I-bin 67.9 36 0.00077 32.3 8.3 61 135-195 215-280 (553)
94 smart00367 LRR_CC Leucine-rich 61.4 6.4 0.00014 20.4 1.5 13 359-371 1-13 (26)
95 PF07127 Nodulin_late: Late no 43.9 28 0.00061 22.0 2.6 22 1-22 1-22 (54)
96 PRK14745 RepA leader peptide T 28.8 87 0.0019 16.0 2.4 20 5-24 2-21 (26)
97 PF07723 LRR_2: Leucine Rich R 24.5 48 0.001 17.3 1.1 11 185-195 2-12 (26)
98 TIGR00864 PCC polycystin catio 23.0 50 0.0011 38.6 1.9 33 267-299 1-33 (2740)
99 KOG1665 AFH1-interacting prote 22.9 1.5E+02 0.0033 25.1 4.2 38 237-274 172-209 (302)
100 KOG4242 Predicted myosin-I-bin 22.5 80 0.0017 30.1 2.8 108 236-348 165-280 (553)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.5e-40 Score=343.72 Aligned_cols=319 Identities=34% Similarity=0.517 Sum_probs=193.5
Q ss_pred cHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcccceEecCCCCcEEEEEcCCCCCCCCCcceecCccccCCCCCCE
Q 040379 34 IDEEREALLTFKESLVDESGVLSSWGPEDEKRDCCKWTGVGCSNRTGHVIKLEIQPIDFDSFPLRGTISPALLQLHRLTY 113 (373)
Q Consensus 34 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~c~w~~v~c~~~~~~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~ 113 (373)
.++|+.+|++||+++.+|.+.+.+|+ ...+||.|.|+.|+. .++|+.++++++ ++.|.++..+..+++|++
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~---~~~~~c~w~gv~c~~-~~~v~~L~L~~~-----~i~~~~~~~~~~l~~L~~ 97 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWN---SSADVCLWQGITCNN-SSRVVSIDLSGK-----NISGKISSAIFRLPYIQT 97 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCC---CCCCCCcCcceecCC-CCcEEEEEecCC-----CccccCChHHhCCCCCCE
Confidence 45799999999999988877788997 477899999999975 568999999986 566667777777777777
Q ss_pred EeCCCCCCCCCCCccccC-CCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCCEEEccC
Q 040379 114 LDLSLNNFSGSPIPEFIG-SLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGS 192 (373)
Q Consensus 114 L~l~~n~l~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~ 192 (373)
|++++|.+++. +|..+. .+++|++|++++|++++.+|. +.+++|++|++++|.+. ...+..+.++++|++|++++
T Consensus 98 L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~-~~~p~~~~~l~~L~~L~L~~ 173 (968)
T PLN00113 98 INLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLS-GEIPNDIGSFSSLKVLDLGG 173 (968)
T ss_pred EECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCccc-ccCChHHhcCCCCCEEECcc
Confidence 77777777764 555433 566666666666666555443 23455555555555542 12223344455555555555
Q ss_pred ccCCCCc----------------------chhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCC
Q 040379 193 NNLSRST----------------------DWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTN 250 (373)
Q Consensus 193 n~~~~~~----------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~ 250 (373)
|.+.+.. .++..++++++|++|++++|.+.+..|..++.+ ++|++|++++|.+.+
T Consensus 174 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~L~~n~l~~ 250 (968)
T PLN00113 174 NVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL---TSLNHLDLVYNNLTG 250 (968)
T ss_pred CcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcC---CCCCEEECcCceecc
Confidence 5443310 133444444555555555555544444444444 555555555555554
Q ss_pred CchhHHHhccccCcEEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhh
Q 040379 251 SIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQ 330 (373)
Q Consensus 251 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 330 (373)
.+|..+... ++|+.|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+.
T Consensus 251 ~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 329 (968)
T PLN00113 251 PIPSSLGNL-KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT 329 (968)
T ss_pred ccChhHhCC-CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHh
Confidence 444443332 2355555555555555555555555555555555555555555555555566666665555555555544
Q ss_pred ccCCCCccCEEECcCCcCcccCchhhhCCCCCCEEeCcCCCC
Q 040379 331 NLSRFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 372 (373)
Q Consensus 331 ~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 372 (373)
.++ +|+.|++++|.+++.+|..++.+++|+.|++++|++
T Consensus 330 ~l~---~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l 368 (968)
T PLN00113 330 SLP---RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368 (968)
T ss_pred cCC---CCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCee
Confidence 443 666666666666666666666666666666666654
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.9e-33 Score=286.67 Aligned_cols=270 Identities=33% Similarity=0.463 Sum_probs=189.5
Q ss_pred CCcceecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCC
Q 040379 95 FPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAG 174 (373)
Q Consensus 95 ~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~ 174 (373)
|.+.+.+|..++.+++|++|++++|.+.+. +|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+. ..
T Consensus 150 n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~ 227 (968)
T PLN00113 150 NMLSGEIPNDIGSFSSLKVLDLGGNVLVGK-IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS-GE 227 (968)
T ss_pred CcccccCChHHhcCCCCCEEECccCccccc-CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC-Cc
Confidence 356667777777888888888888877764 7777777888888888888877777777778888888888887773 23
Q ss_pred CCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchh
Q 040379 175 NLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYP 254 (373)
Q Consensus 175 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~ 254 (373)
.+..+.++++|++|++++|.+.+. ++..++++++|++|++++|.+.+..|..+..+ ++|++|++++|.+.+.+|.
T Consensus 228 ~p~~l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~Ls~n~l~~~~p~ 302 (968)
T PLN00113 228 IPYEIGGLTSLNHLDLVYNNLTGP--IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL---QKLISLDLSDNSLSGEIPE 302 (968)
T ss_pred CChhHhcCCCCCEEECcCceeccc--cChhHhCCCCCCEEECcCCeeeccCchhHhhc---cCcCEEECcCCeeccCCCh
Confidence 444567777888888887777653 45677777777777777777777777777666 7777777777777766665
Q ss_pred HHHhccccCcEEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccC-
Q 040379 255 WLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLS- 333 (373)
Q Consensus 255 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~- 333 (373)
.+.. +++|+.|++++|.+++.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+.
T Consensus 303 ~~~~-l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~ 381 (968)
T PLN00113 303 LVIQ-LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGN 381 (968)
T ss_pred hHcC-CCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCC
Confidence 5433 34477777777777777777777777777777777777766777677777777777777777666665554322
Q ss_pred --------------------CCCccCEEECcCCcCcccCchhhhCCCCCCEEeCcCCCC
Q 040379 334 --------------------RFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 372 (373)
Q Consensus 334 --------------------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 372 (373)
.+++|+.|++++|.+++..|..+..+++|+.|++++|++
T Consensus 382 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 440 (968)
T PLN00113 382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNL 440 (968)
T ss_pred CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcc
Confidence 233566666666666666666666666666666666654
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=4.5e-30 Score=232.68 Aligned_cols=282 Identities=25% Similarity=0.277 Sum_probs=182.5
Q ss_pred CCCcEEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCC
Q 040379 78 RTGHVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNL 157 (373)
Q Consensus 78 ~~~~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 157 (373)
..++++.+++..+. ++..-.+.+..++.|+.|||+.|.|+..+. ..+..=.++++|+|++|+++..--..|..+
T Consensus 123 ~sghl~~L~L~~N~-----I~sv~se~L~~l~alrslDLSrN~is~i~~-~sfp~~~ni~~L~La~N~It~l~~~~F~~l 196 (873)
T KOG4194|consen 123 ESGHLEKLDLRHNL-----ISSVTSEELSALPALRSLDLSRNLISEIPK-PSFPAKVNIKKLNLASNRITTLETGHFDSL 196 (873)
T ss_pred cccceeEEeeeccc-----cccccHHHHHhHhhhhhhhhhhchhhcccC-CCCCCCCCceEEeecccccccccccccccc
Confidence 34788899988863 332223445555666666666665554321 223333455555555555554444445555
Q ss_pred CCCCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCC------------------------CCcchhhhhCCCCCCcE
Q 040379 158 SALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLS------------------------RSTDWLQVVGNLPLLTT 213 (373)
Q Consensus 158 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~------------------------~~~~~~~~~~~l~~L~~ 213 (373)
.+|.+|.|++|.++ ..++..|.++++|+.|++..|++. ...+ ..+..+.++++
T Consensus 197 nsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~D--G~Fy~l~kme~ 273 (873)
T KOG4194|consen 197 NSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDD--GAFYGLEKMEH 273 (873)
T ss_pred chheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccC--cceeeecccce
Confidence 55555555555552 222334455555555555555443 3322 33444556666
Q ss_pred EEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEEEcc
Q 040379 214 LYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLA 293 (373)
Q Consensus 214 L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 293 (373)
|++..|+++..-..++.++ +.|+.|++|+|.+. .+...-+..+++|+.|++++|+++...+..|..+..|++|+|+
T Consensus 274 l~L~~N~l~~vn~g~lfgL---t~L~~L~lS~NaI~-rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs 349 (873)
T KOG4194|consen 274 LNLETNRLQAVNEGWLFGL---TSLEQLDLSYNAIQ-RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLS 349 (873)
T ss_pred eecccchhhhhhccccccc---chhhhhccchhhhh-eeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccc
Confidence 6666666655544455555 77777777777766 3434444555567777777777776666677777777777777
Q ss_pred CCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCcccCchhhhCCCCCCEEeCcCCCC
Q 040379 294 SNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 372 (373)
Q Consensus 294 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 372 (373)
.|.++..--..|..+++|++|||++|.++..+.+.-..+..+++|+.|++.+|++..+....|.++++|+.||+.+|.|
T Consensus 350 ~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 350 HNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred ccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcc
Confidence 7777754455677788999999999999887777666667788999999999999998888999999999999999976
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=2.4e-28 Score=221.61 Aligned_cols=277 Identities=23% Similarity=0.250 Sum_probs=197.7
Q ss_pred cEEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCC
Q 040379 81 HVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSAL 160 (373)
Q Consensus 81 ~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 160 (373)
.+..++++.+ .++..-+..|.++++|+++++..|.++ .+|...+...+|+.|+|.+|.++..-.+.+..++.|
T Consensus 79 ~t~~LdlsnN-----kl~~id~~~f~nl~nLq~v~l~~N~Lt--~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~al 151 (873)
T KOG4194|consen 79 QTQTLDLSNN-----KLSHIDFEFFYNLPNLQEVNLNKNELT--RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPAL 151 (873)
T ss_pred ceeeeecccc-----ccccCcHHHHhcCCcceeeeeccchhh--hcccccccccceeEEeeeccccccccHHHHHhHhhh
Confidence 4556777765 555555567788999999999999888 477777777788899998888886666777888888
Q ss_pred CEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCE
Q 040379 161 QHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQF 240 (373)
Q Consensus 161 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~ 240 (373)
+.||||.|.+... ..+.+..-.++++|++++|.++.... ..+..+.+|..|.++.|+++...+..|..+ ++|+.
T Consensus 152 rslDLSrN~is~i-~~~sfp~~~ni~~L~La~N~It~l~~--~~F~~lnsL~tlkLsrNrittLp~r~Fk~L---~~L~~ 225 (873)
T KOG4194|consen 152 RSLDLSRNLISEI-PKPSFPAKVNIKKLNLASNRITTLET--GHFDSLNSLLTLKLSRNRITTLPQRSFKRL---PKLES 225 (873)
T ss_pred hhhhhhhchhhcc-cCCCCCCCCCceEEeecccccccccc--ccccccchheeeecccCcccccCHHHhhhc---chhhh
Confidence 8888888888433 33456666778888888888877533 566677777777888887777666677666 77777
Q ss_pred EECCCCcCCC-----------------------CchhHHHhccccCcEEEccCccccccccccccCCCCCCEEEccCCcC
Q 040379 241 LELSENNLTN-----------------------SIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEF 297 (373)
Q Consensus 241 L~ls~n~l~~-----------------------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 297 (373)
|+|..|++.- .+-+..|-.+.++++|++..|+++..-..++.++++|+.|++++|.+
T Consensus 226 LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI 305 (873)
T KOG4194|consen 226 LDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAI 305 (873)
T ss_pred hhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhh
Confidence 7777766541 12223333444566777777776655555666777777777777777
Q ss_pred cccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCcccCchhhhCCCCCCEEeCcCCCCC
Q 040379 298 EGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLI 373 (373)
Q Consensus 298 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~lt 373 (373)
....++.+..+++|+.|+|++|+|+..-+..+..+. .|++|+|+.|.++..-...|..+++|++||+++|.|+
T Consensus 306 ~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~---~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls 378 (873)
T KOG4194|consen 306 QRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS---QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELS 378 (873)
T ss_pred heeecchhhhcccceeEeccccccccCChhHHHHHH---HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEE
Confidence 777777777777777777777777755555555555 7777777777777766667777788888888888763
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=3.5e-28 Score=222.31 Aligned_cols=271 Identities=25% Similarity=0.322 Sum_probs=177.9
Q ss_pred CcEEEEEcCCCCCCCCCcc-eecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCC
Q 040379 80 GHVIKLEIQPIDFDSFPLR-GTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLS 158 (373)
Q Consensus 80 ~~v~~l~l~~~~l~~~~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 158 (373)
+-|+.+|++++ .++ +.+|....+++.++.|.|...++. .+|+.++.+.+|++|.+++|++. .+-..+..++
T Consensus 7 pFVrGvDfsgN-----DFsg~~FP~~v~qMt~~~WLkLnrt~L~--~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp 78 (1255)
T KOG0444|consen 7 PFVRGVDFSGN-----DFSGDRFPHDVEQMTQMTWLKLNRTKLE--QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLP 78 (1255)
T ss_pred ceeecccccCC-----cCCCCcCchhHHHhhheeEEEechhhhh--hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccch
Confidence 45667777776 444 467777778888888888887776 57888888888888888888876 4556677788
Q ss_pred CCCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCcc
Q 040379 159 ALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSL 238 (373)
Q Consensus 159 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L 238 (373)
.|+.+++..|++...+.++.+.++..|+.|++++|++.. .|..+...+++-.|++++|++..+...-+.++ +.|
T Consensus 79 ~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E---vP~~LE~AKn~iVLNLS~N~IetIPn~lfinL---tDL 152 (1255)
T KOG0444|consen 79 RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE---VPTNLEYAKNSIVLNLSYNNIETIPNSLFINL---TDL 152 (1255)
T ss_pred hhHHHhhhccccccCCCCchhcccccceeeecchhhhhh---cchhhhhhcCcEEEEcccCccccCCchHHHhh---HhH
Confidence 888888888888777777777888888888888888776 45677777778888888887776544455556 677
Q ss_pred CEEECCCCcCCCCchhHHHhccccCcEEEccCcccc-------------------------ccccccccCCCCCCEEEcc
Q 040379 239 QFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLR-------------------------GSIPVAFKHMVSVSFLGLA 293 (373)
Q Consensus 239 ~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~-------------------------~~~~~~l~~l~~L~~L~L~ 293 (373)
-.||+|+|++. .+|+.+..... |++|++++|.+. ..+|.++..+.+|..+|++
T Consensus 153 LfLDLS~NrLe-~LPPQ~RRL~~-LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS 230 (1255)
T KOG0444|consen 153 LFLDLSNNRLE-MLPPQIRRLSM-LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS 230 (1255)
T ss_pred hhhccccchhh-hcCHHHHHHhh-hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc
Confidence 77777777776 56665544333 666666655432 2355566666666777777
Q ss_pred CCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCcccCchhhhCCCCCCEEeCcCCCC
Q 040379 294 SNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 372 (373)
Q Consensus 294 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 372 (373)
.|.+. .+|+.+.++++|+.|+||+|+|+ .+....+.+. +|+.|+++.|+++. .|..+.+++.|+.|.+.+|++
T Consensus 231 ~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~---~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL 303 (1255)
T KOG0444|consen 231 ENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWE---NLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKL 303 (1255)
T ss_pred ccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHh---hhhhhccccchhcc-chHHHhhhHHHHHHHhccCcc
Confidence 77766 56666666666666666666665 2222222222 44445555554443 233444444444444444443
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=2.8e-26 Score=210.00 Aligned_cols=254 Identities=30% Similarity=0.389 Sum_probs=175.1
Q ss_pred cCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCccccc-CCCCCCCEEEccCCCCCCCCCCccc
Q 040379 101 ISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHL-GNLSALQHLDLSLNHLFSAGNLDWL 179 (373)
Q Consensus 101 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~~~~~~~~~~~ 179 (373)
+|+.+..+..|+.|||+.|++. ..|..+...+++-.|+||+|++. ++|..+ .++..|-+||||+|.+ ...++.+
T Consensus 95 iP~diF~l~dLt~lDLShNqL~--EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrL--e~LPPQ~ 169 (1255)
T KOG0444|consen 95 IPTDIFRLKDLTILDLSHNQLR--EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRL--EMLPPQI 169 (1255)
T ss_pred CCchhcccccceeeecchhhhh--hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchh--hhcCHHH
Confidence 5566666666666666666666 35666666666666666666666 455433 4666666666666666 3445556
Q ss_pred CCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCC-CCCcccccCCCCCCccCEEECCCCcCCCCchhHHHh
Q 040379 180 SHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLP-PIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFN 258 (373)
Q Consensus 180 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~ 258 (373)
.++..|++|.+++|.+... -...+-.+++|+.|.+++.+-+ ..+|.++..+ .+|+.+|+|.|.+. .+|..++.
T Consensus 170 RRL~~LqtL~Ls~NPL~hf--QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l---~NL~dvDlS~N~Lp-~vPecly~ 243 (1255)
T KOG0444|consen 170 RRLSMLQTLKLSNNPLNHF--QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDL---HNLRDVDLSENNLP-IVPECLYK 243 (1255)
T ss_pred HHHhhhhhhhcCCChhhHH--HHhcCccchhhhhhhcccccchhhcCCCchhhh---hhhhhccccccCCC-cchHHHhh
Confidence 6666677777776665431 1123344555666666665433 4467777777 78888888888887 67777766
Q ss_pred ccccCcEEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCc-ccCchhhhccCCCCc
Q 040379 259 ASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLR-GHFPELIQNLSRFSS 337 (373)
Q Consensus 259 ~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~~~~ 337 (373)
... |+.|++++|+++ .+.-..+...+|++|+|+.|+++ .+|+.+.++++|+.|++.+|+++ .-+|..++.+. +
T Consensus 244 l~~-LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~---~ 317 (1255)
T KOG0444|consen 244 LRN-LRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI---Q 317 (1255)
T ss_pred hhh-hheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhh---h
Confidence 655 888888888887 34334456677888888888888 68888888888888888888775 34677777766 7
Q ss_pred cCEEECcCCcCcccCchhhhCCCCCCEEeCcCCCC
Q 040379 338 LKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 372 (373)
Q Consensus 338 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 372 (373)
|+++...+|.+. .+|..++.|+.|+.|.++.|++
T Consensus 318 Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrL 351 (1255)
T KOG0444|consen 318 LEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRL 351 (1255)
T ss_pred hHHHHhhccccc-cCchhhhhhHHHHHhcccccce
Confidence 888888888774 5677888888888888888876
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.90 E-value=1e-25 Score=196.17 Aligned_cols=264 Identities=29% Similarity=0.400 Sum_probs=183.1
Q ss_pred CcceecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccC-CCCCCCEEEccCCCCCCCC
Q 040379 96 PLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLG-NLSALQHLDLSLNHLFSAG 174 (373)
Q Consensus 96 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~~~~~~ 174 (373)
+.-+.+|+.++.+.+|+.|++..|++. .+| .|.++..|++|+++.|++. .+|.+.. ++++|.+||++.|++ ..
T Consensus 193 N~L~tlP~~lg~l~~L~~LyL~~Nki~--~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNkl--ke 266 (565)
T KOG0472|consen 193 NLLETLPPELGGLESLELLYLRRNKIR--FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKL--KE 266 (565)
T ss_pred hhhhcCChhhcchhhhHHHHhhhcccc--cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccc--cc
Confidence 355688888888888988999988887 356 6788888888888888887 6776665 788888889988888 44
Q ss_pred CCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCC------------------------------
Q 040379 175 NLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPI------------------------------ 224 (373)
Q Consensus 175 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------------------ 224 (373)
.+..+..+.+|++||+++|.+++ ++..++++ .|+.|-+.+|.+...
T Consensus 267 ~Pde~clLrsL~rLDlSNN~is~---Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~ 342 (565)
T KOG0472|consen 267 VPDEICLLRSLERLDLSNNDISS---LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEG 342 (565)
T ss_pred CchHHHHhhhhhhhcccCCcccc---CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcc
Confidence 55667778888889998888887 55778888 888888887743110
Q ss_pred --------CcccccCCCCCCccCEEECCCCcCCCCchhHHHhccc--cCcEEEccCcccc--------------------
Q 040379 225 --------VPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASS--NLVLLGLDSNLLR-------------------- 274 (373)
Q Consensus 225 --------~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~--~L~~L~l~~n~l~-------------------- 274 (373)
.+..+..-....+.++|+++.-+++ .+|.++|.... -...++++.|++.
T Consensus 343 ~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsn 421 (565)
T KOG0472|consen 343 GTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSN 421 (565)
T ss_pred cccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhc
Confidence 0011111112245566666666665 56665554432 1334444444332
Q ss_pred ---ccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhh---------------------
Q 040379 275 ---GSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQ--------------------- 330 (373)
Q Consensus 275 ---~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~--------------------- 330 (373)
+.+|..++.+++|..|++++|.+. .+|..++.+..|+.|+++.|++. .+|..+.
T Consensus 422 n~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~ 499 (565)
T KOG0472|consen 422 NKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPS 499 (565)
T ss_pred CccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChH
Confidence 245556667778888888887776 57777777777888888877764 2332211
Q ss_pred ccCCCCccCEEECcCCcCcccCchhhhCCCCCCEEeCcCCCCC
Q 040379 331 NLSRFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLI 373 (373)
Q Consensus 331 ~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~lt 373 (373)
.+.++.+|..|||.+|.+...+ +.+++|++|+.|+++||+|.
T Consensus 500 ~l~nm~nL~tLDL~nNdlq~IP-p~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 500 GLKNMRNLTTLDLQNNDLQQIP-PILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HhhhhhhcceeccCCCchhhCC-hhhccccceeEEEecCCccC
Confidence 1234559999999999997654 48999999999999999973
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=2.2e-26 Score=200.33 Aligned_cols=250 Identities=32% Similarity=0.425 Sum_probs=221.8
Q ss_pred ecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCccc
Q 040379 100 TISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWL 179 (373)
Q Consensus 100 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~ 179 (373)
.+.+.+.++..+.+|++.+|++. .+|.+++.+..++.++.++|+++ .+|+.++.+.+|..++.++|.+ ...++.+
T Consensus 59 ~l~~dl~nL~~l~vl~~~~n~l~--~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~--~el~~~i 133 (565)
T KOG0472|consen 59 VLREDLKNLACLTVLNVHDNKLS--QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNEL--KELPDSI 133 (565)
T ss_pred hccHhhhcccceeEEEeccchhh--hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccce--eecCchH
Confidence 34466778999999999999998 58999999999999999999999 8999999999999999999999 5667788
Q ss_pred CCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhc
Q 040379 180 SHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNA 259 (373)
Q Consensus 180 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~ 259 (373)
+.+..++.++..+|++.. .|..+..+.++..+++.+|++....|..+. + +.|+++|...|.+. .+|+.++..
T Consensus 134 ~~~~~l~dl~~~~N~i~s---lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m---~~L~~ld~~~N~L~-tlP~~lg~l 205 (565)
T KOG0472|consen 134 GRLLDLEDLDATNNQISS---LPEDMVNLSKLSKLDLEGNKLKALPENHIA-M---KRLKHLDCNSNLLE-TLPPELGGL 205 (565)
T ss_pred HHHhhhhhhhcccccccc---CchHHHHHHHHHHhhccccchhhCCHHHHH-H---HHHHhcccchhhhh-cCChhhcch
Confidence 999999999999999987 568889999999999999999987666665 7 89999999999887 899988766
Q ss_pred cccCcEEEccCccccccccccccCCCCCCEEEccCCcCccccccc-ccCCCCCCeEeCcCCcCcccCchhhhccCCCCcc
Q 040379 260 SSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDF-FGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSL 338 (373)
Q Consensus 260 ~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L 338 (373)
-+ |+.|++..|++. .+| .|.++..|++++++.|++. .+|.. ..+++++.+||++.|++. ++|+.++.+. +|
T Consensus 206 ~~-L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLr---sL 277 (565)
T KOG0472|consen 206 ES-LELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLR---SL 277 (565)
T ss_pred hh-hHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhh---hh
Confidence 55 999999999998 677 7899999999999999998 45544 459999999999999998 8999988887 89
Q ss_pred CEEECcCCcCcccCchhhhCCCCCCEEeCcCCCC
Q 040379 339 KELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 372 (373)
Q Consensus 339 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 372 (373)
++||+++|.|++.++ .++++ .|+.|-+.||++
T Consensus 278 ~rLDlSNN~is~Lp~-sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 278 ERLDLSNNDISSLPY-SLGNL-HLKFLALEGNPL 309 (565)
T ss_pred hhhcccCCccccCCc-ccccc-eeeehhhcCCch
Confidence 999999999998755 78999 999999999986
No 9
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.88 E-value=1.5e-21 Score=191.57 Aligned_cols=226 Identities=23% Similarity=0.332 Sum_probs=136.1
Q ss_pred CCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCCEEE
Q 040379 110 RLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLD 189 (373)
Q Consensus 110 ~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 189 (373)
+|+.|++++|+++. +|..+. ++|++|++++|+++ .+|..+. .+|+.|++++|.+.. .+..+ ..+|++|+
T Consensus 200 ~L~~L~Ls~N~Lts--LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~~--LP~~l--~s~L~~L~ 268 (754)
T PRK15370 200 QITTLILDNNELKS--LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRITE--LPERL--PSALQSLD 268 (754)
T ss_pred CCcEEEecCCCCCc--CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccCc--CChhH--hCCCCEEE
Confidence 45555555555552 343332 35666666666555 3444332 345666666666521 12222 13566666
Q ss_pred ccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEcc
Q 040379 190 LGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLD 269 (373)
Q Consensus 190 l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~ 269 (373)
+++|++... +..+. ++|+.|++++|.++. +|..+. ++|+.|++++|.++ .+|..+ .++|+.|+++
T Consensus 269 Ls~N~L~~L---P~~l~--~sL~~L~Ls~N~Lt~-LP~~lp-----~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls 333 (754)
T PRK15370 269 LFHNKISCL---PENLP--EELRYLSVYDNSIRT-LPAHLP-----SGITHLNVQSNSLT-ALPETL---PPGLKTLEAG 333 (754)
T ss_pred CcCCccCcc---ccccC--CCCcEEECCCCcccc-Ccccch-----hhHHHHHhcCCccc-cCCccc---cccceecccc
Confidence 666666542 22221 356666666666654 232221 35666666666666 344332 2458888888
Q ss_pred CccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCc
Q 040379 270 SNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLN 349 (373)
Q Consensus 270 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~ 349 (373)
+|.+++ +|..+. ++|+.|++++|+++ .+|..+. ++|++|++++|+++ .+|..+.. .|+.|++++|+++
T Consensus 334 ~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~~-----sL~~LdLs~N~L~ 401 (754)
T PRK15370 334 ENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLPA-----ALQIMQASRNNLV 401 (754)
T ss_pred CCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHHH-----HHHHHhhccCCcc
Confidence 888874 565543 68888888888887 4665543 68889999999888 56655432 6888899999887
Q ss_pred ccC---chhhhCCCCCCEEeCcCCCCC
Q 040379 350 GFT---NNSIGQMSKLRTLSLNGNSLI 373 (373)
Q Consensus 350 ~~~---~~~~~~l~~L~~L~l~~n~lt 373 (373)
+.+ |.....++++..|++.+|+++
T Consensus 402 ~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 402 RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 542 223344588899999999874
No 10
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=9e-21 Score=185.18 Aligned_cols=229 Identities=27% Similarity=0.324 Sum_probs=137.5
Q ss_pred ecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCc--
Q 040379 100 TISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLD-- 177 (373)
Q Consensus 100 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~-- 177 (373)
.+|+.+. ++|+.|++++|+++. +|.. +++|++|++++|+++ .+|.. .++|++|++++|.+......+
T Consensus 215 sLP~~l~--~~L~~L~L~~N~Lt~--LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~~Lp~lp~~ 283 (788)
T PRK15387 215 TLPDCLP--AHITTLVIPDNNLTS--LPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLTHLPALPSG 283 (788)
T ss_pred cCCcchh--cCCCEEEccCCcCCC--CCCC---CCCCcEEEecCCccC-cccCc---ccccceeeccCCchhhhhhchhh
Confidence 3455443 356666666666663 4432 356666666666665 34432 245555555555542111000
Q ss_pred -------------ccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECC
Q 040379 178 -------------WLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELS 244 (373)
Q Consensus 178 -------------~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls 244 (373)
.....++|++|++++|++.+.+.+ ..+|+.|++++|.+++ +|. + ..+|+.|+++
T Consensus 284 L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~Lp~l------p~~L~~L~Ls~N~L~~-LP~----l--p~~Lq~LdLS 350 (788)
T PRK15387 284 LCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPAL------PSELCKLWAYNNQLTS-LPT----L--PSGLQELSVS 350 (788)
T ss_pred cCEEECcCCccccccccccccceeECCCCccccCCCC------cccccccccccCcccc-ccc----c--ccccceEecC
Confidence 000123455555555555443221 1234445555555443 221 1 1467888888
Q ss_pred CCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCccc
Q 040379 245 ENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGH 324 (373)
Q Consensus 245 ~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 324 (373)
+|+++ .+|. ...+|+.|++++|+++ .+|.. ..+|+.|++++|.+++ +|.. .++|+.|++++|+++ .
T Consensus 351 ~N~Ls-~LP~----lp~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-s 416 (788)
T PRK15387 351 DNQLA-SLPT----LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-S 416 (788)
T ss_pred CCccC-CCCC----CCcccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-C
Confidence 88877 4553 2345777888888877 35543 2568889999998884 5543 357899999999988 4
Q ss_pred CchhhhccCCCCccCEEECcCCcCcccCchhhhCCCCCCEEeCcCCCCC
Q 040379 325 FPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLI 373 (373)
Q Consensus 325 ~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~lt 373 (373)
+|... ++|+.|++++|+++. +|..+.++++|+.|++++|+|+
T Consensus 417 IP~l~------~~L~~L~Ls~NqLt~-LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 417 LPMLP------SGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred CCcch------hhhhhhhhccCcccc-cChHHhhccCCCeEECCCCCCC
Confidence 66432 268889999999985 5777889999999999999885
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.84 E-value=1.8e-19 Score=187.99 Aligned_cols=104 Identities=18% Similarity=0.193 Sum_probs=50.3
Q ss_pred cCcEEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCc---------------------CCc
Q 040379 262 NLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNIS---------------------DNK 320 (373)
Q Consensus 262 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~---------------------~n~ 320 (373)
+|+.|++++|...+.+|..++++++|+.|++++|..-+.+|..+ .+++|+.|+++ +|.
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~ 857 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTG 857 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCC
Confidence 35555555555444555555555666666665554333344332 34444444444 444
Q ss_pred CcccCchhhhccCCCCccCEEECcCCcCcccCchhhhCCCCCCEEeCcCC
Q 040379 321 LRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGN 370 (373)
Q Consensus 321 l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 370 (373)
++ .+|..+..++ +|+.|++++|+-...+|..+..+++|+.+++++|
T Consensus 858 i~-~iP~si~~l~---~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 858 IE-EVPWWIEKFS---NLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred Cc-cChHHHhcCC---CCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 44 3444333333 5555555554322223334455555555555555
No 12
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.84 E-value=6.8e-22 Score=179.60 Aligned_cols=268 Identities=26% Similarity=0.244 Sum_probs=189.3
Q ss_pred cCccccCCCCCCEEeCCCCCCCCC---CCccccCCCCCCCEEeCcCCcccc------CcccccCCCCCCCEEEccCCCCC
Q 040379 101 ISPALLQLHRLTYLDLSLNNFSGS---PIPEFIGSLTKLSYLDLSFAEFEG------PIPSHLGNLSALQHLDLSLNHLF 171 (373)
Q Consensus 101 ~~~~l~~l~~L~~L~l~~n~l~~~---~~~~~l~~l~~L~~L~L~~n~l~~------~~p~~l~~l~~L~~L~L~~n~~~ 171 (373)
....+..+..|++|+++++.++.. .++..+...+.+++++++++.+.+ .++..+..+++|++|++++|.+.
T Consensus 15 ~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 15 ATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG 94 (319)
T ss_pred hHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC
Confidence 344556677799999999988542 245556677889999999887762 23455677889999999999884
Q ss_pred CCCCCcccCCC---CCCCEEEccCccCCCC--cchhhhhCCC-CCCcEEEccCCCCCCCCc----ccccCCCCCCccCEE
Q 040379 172 SAGNLDWLSHL---SSLTYLDLGSNNLSRS--TDWLQVVGNL-PLLTTLYLYRCHLPPIVP----LSLSNLNYSTSLQFL 241 (373)
Q Consensus 172 ~~~~~~~~~~l---~~L~~L~l~~n~~~~~--~~~~~~~~~l-~~L~~L~l~~n~l~~~~~----~~~~~l~~~~~L~~L 241 (373)
. .....+..+ ++|++|++++|++.+. ..+...+..+ ++|++|++++|.+++... ..+..+ ++|++|
T Consensus 95 ~-~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~---~~L~~L 170 (319)
T cd00116 95 P-DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRAN---RDLKEL 170 (319)
T ss_pred h-hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhC---CCcCEE
Confidence 2 222233333 4599999999988742 1233456677 899999999999885332 234444 789999
Q ss_pred ECCCCcCCCCchhHHHhcc---ccCcEEEccCcccccc----ccccccCCCCCCEEEccCCcCccccccccc-----CCC
Q 040379 242 ELSENNLTNSIYPWLFNAS---SNLVLLGLDSNLLRGS----IPVAFKHMVSVSFLGLASNEFEGGVPDFFG-----NMC 309 (373)
Q Consensus 242 ~ls~n~l~~~~~~~~~~~~---~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~ 309 (373)
++++|.+++.....+.... ++|+.|++++|.+++. ++..+..+++|++|++++|.+++..+..+. ..+
T Consensus 171 ~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~ 250 (319)
T cd00116 171 NLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNI 250 (319)
T ss_pred ECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCC
Confidence 9999999864433333222 4699999999998743 345567789999999999999863333222 247
Q ss_pred CCCeEeCcCCcCcccCch-hhhccCCCCccCEEECcCCcCcccC----chhhhCC-CCCCEEeCcCCCC
Q 040379 310 SLTMLNISDNKLRGHFPE-LIQNLSRFSSLKELYLENNRLNGFT----NNSIGQM-SKLRTLSLNGNSL 372 (373)
Q Consensus 310 ~L~~L~L~~n~l~~~~p~-~~~~l~~~~~L~~L~L~~n~l~~~~----~~~~~~l-~~L~~L~l~~n~l 372 (373)
.|++|++++|.+++.... ....+..+++|+++++++|.++... ...+... +.|+++++.+|++
T Consensus 251 ~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 251 SLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 999999999999732111 1233445569999999999998663 3334445 7999999999875
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=3.9e-19 Score=185.50 Aligned_cols=246 Identities=23% Similarity=0.240 Sum_probs=148.0
Q ss_pred CcEEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCC
Q 040379 80 GHVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSA 159 (373)
Q Consensus 80 ~~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 159 (373)
..++.|++..+ .+. .++..+..+++|++|+++++..... +|. ++.+++|++|++++|.....+|..+.++++
T Consensus 611 ~~L~~L~L~~s-----~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~-ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~ 682 (1153)
T PLN03210 611 ENLVKLQMQGS-----KLE-KLWDGVHSLTGLRNIDLRGSKNLKE-IPD-LSMATNLETLKLSDCSSLVELPSSIQYLNK 682 (1153)
T ss_pred cCCcEEECcCc-----ccc-ccccccccCCCCCEEECCCCCCcCc-CCc-cccCCcccEEEecCCCCccccchhhhccCC
Confidence 35666777664 322 3445555667777777766543322 443 555666777777666554566666666666
Q ss_pred CCEEEccCCCCCCCCCCcccCCCCCCCEE---------------------EccCccCCCCcchh----------------
Q 040379 160 LQHLDLSLNHLFSAGNLDWLSHLSSLTYL---------------------DLGSNNLSRSTDWL---------------- 202 (373)
Q Consensus 160 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L---------------------~l~~n~~~~~~~~~---------------- 202 (373)
|+.|++++|..... .+...++++|++| ++++|.+...+...
T Consensus 683 L~~L~L~~c~~L~~--Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~ 760 (1153)
T PLN03210 683 LEDLDMSRCENLEI--LPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSE 760 (1153)
T ss_pred CCEEeCCCCCCcCc--cCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchh
Confidence 66666666543111 1111134444444 44444433221100
Q ss_pred -----------hhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCc
Q 040379 203 -----------QVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSN 271 (373)
Q Consensus 203 -----------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n 271 (373)
......++|+.|++++|...+.+|..++.+ ++|+.|++++|...+.+|... .+++|+.|++++|
T Consensus 761 ~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L---~~L~~L~Ls~C~~L~~LP~~~--~L~sL~~L~Ls~c 835 (1153)
T PLN03210 761 KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNL---HKLEHLEIENCINLETLPTGI--NLESLESLDLSGC 835 (1153)
T ss_pred hccccccccchhhhhccccchheeCCCCCCccccChhhhCC---CCCCEEECCCCCCcCeeCCCC--CccccCEEECCCC
Confidence 000112456666666666555666666666 777777777765444565543 3455777777776
Q ss_pred cccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCc
Q 040379 272 LLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNR 347 (373)
Q Consensus 272 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~ 347 (373)
.....+|.. .++|+.|+|++|.++ .+|..+..+++|++|++++|+-...+|..+..+ ++|+.+++++|.
T Consensus 836 ~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L---~~L~~L~l~~C~ 904 (1153)
T PLN03210 836 SRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKL---KHLETVDFSDCG 904 (1153)
T ss_pred Ccccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccc---cCCCeeecCCCc
Confidence 544444432 357888999999888 688889999999999999965444666655544 489999999985
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.81 E-value=5.4e-22 Score=189.22 Aligned_cols=246 Identities=31% Similarity=0.420 Sum_probs=151.6
Q ss_pred CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCCEE
Q 040379 109 HRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYL 188 (373)
Q Consensus 109 ~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 188 (373)
.+|++++++.|.+++ +|++++.+.+|+.++..+|+++ .+|..+....+|+.|.+.+|.+ ...++.....+.|++|
T Consensus 241 ~nl~~~dis~n~l~~--lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel--~yip~~le~~~sL~tL 315 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSN--LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNEL--EYIPPFLEGLKSLRTL 315 (1081)
T ss_pred ccceeeecchhhhhc--chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhh--hhCCCcccccceeeee
Confidence 455666666666663 5566666666666666666664 5666666666666666666666 3344455566677777
Q ss_pred EccCccCCCCcchhhhhCCCCC-CcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEE
Q 040379 189 DLGSNNLSRSTDWLQVVGNLPL-LTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLG 267 (373)
Q Consensus 189 ~l~~n~~~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~ 267 (373)
++..|.+...++ ..+..... ++.|+.+.|.+.......-. .++.|+.|++.+|.+++.+.+.+..... |+.|+
T Consensus 316 dL~~N~L~~lp~--~~l~v~~~~l~~ln~s~n~l~~lp~~~e~---~~~~Lq~LylanN~Ltd~c~p~l~~~~h-LKVLh 389 (1081)
T KOG0618|consen 316 DLQSNNLPSLPD--NFLAVLNASLNTLNVSSNKLSTLPSYEEN---NHAALQELYLANNHLTDSCFPVLVNFKH-LKVLH 389 (1081)
T ss_pred eehhccccccch--HHHhhhhHHHHHHhhhhccccccccccch---hhHHHHHHHHhcCcccccchhhhccccc-eeeee
Confidence 777776665432 22222222 44444444444332211111 1256777778888777666555444433 88888
Q ss_pred ccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCc
Q 040379 268 LDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNR 347 (373)
Q Consensus 268 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~ 347 (373)
+++|++.......+.+++.|++|+|++|+++ .+|+.+..++.|++|...+|++. .+| .+..++ .|+.+|++.|+
T Consensus 390 LsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~---qL~~lDlS~N~ 463 (1081)
T KOG0618|consen 390 LSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLP---QLKVLDLSCNN 463 (1081)
T ss_pred ecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcC---cceEEecccch
Confidence 8888777433445677777888888888887 57777777788888888777777 555 444444 78888888887
Q ss_pred CcccCchhhhCCCCCCEEeCcCCC
Q 040379 348 LNGFTNNSIGQMSKLRTLSLNGNS 371 (373)
Q Consensus 348 l~~~~~~~~~~l~~L~~L~l~~n~ 371 (373)
++...-..-...++|++||++||.
T Consensus 464 L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 464 LSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhhhhhhhCCCcccceeeccCCc
Confidence 765543222223788888888875
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.81 E-value=4.5e-22 Score=173.26 Aligned_cols=277 Identities=24% Similarity=0.253 Sum_probs=164.5
Q ss_pred cEEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcC-CccccCcccccCCCCC
Q 040379 81 HVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSF-AEFEGPIPSHLGNLSA 159 (373)
Q Consensus 81 ~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~ 159 (373)
..+.+++..| .++...+.+|..+++||.|||+.|.|+.+ -|++|.++++|..|-+.+ |+|+...-..|.++..
T Consensus 68 ~tveirLdqN-----~I~~iP~~aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~s 141 (498)
T KOG4237|consen 68 ETVEIRLDQN-----QISSIPPGAFKTLHRLRRLDLSKNNISFI-APDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSS 141 (498)
T ss_pred cceEEEeccC-----CcccCChhhccchhhhceecccccchhhc-ChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHH
Confidence 4455666554 56655556777777777777777777775 677777777776666555 6777433345677777
Q ss_pred CCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCC------------CCcc
Q 040379 160 LQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPP------------IVPL 227 (373)
Q Consensus 160 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~------------~~~~ 227 (373)
|+.|.+.-|++ .......+..++++..|.+.+|.+..+.. ..+..+..++.+.+..|.+.. ..|.
T Consensus 142 lqrLllNan~i-~Cir~~al~dL~~l~lLslyDn~~q~i~~--~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i 218 (498)
T KOG4237|consen 142 LQRLLLNANHI-NCIRQDALRDLPSLSLLSLYDNKIQSICK--GTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI 218 (498)
T ss_pred HHHHhcChhhh-cchhHHHHHHhhhcchhcccchhhhhhcc--ccccchhccchHhhhcCccccccccchhhhHHhhchh
Confidence 77777777776 23333466777777777777777665322 356666677777766665211 1111
Q ss_pred cccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCcccccccc-ccccCCCCCCEEEccCCcCccccccccc
Q 040379 228 SLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIP-VAFKHMVSVSFLGLASNEFEGGVPDFFG 306 (373)
Q Consensus 228 ~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 306 (373)
.++.+ ....-..+.+.++...-+..+......+..-..+.+...+..| ..|..+++|+.|+|++|++++.-+.+|.
T Consensus 219 etsga---rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe 295 (498)
T KOG4237|consen 219 ETSGA---RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFE 295 (498)
T ss_pred hcccc---eecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhc
Confidence 11111 2222222222222211111111111111111112222222333 3467788888888888888877777888
Q ss_pred CCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCcccCchhhhCCCCCCEEeCcCCCC
Q 040379 307 NMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 372 (373)
Q Consensus 307 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 372 (373)
+..++++|.|..|++...-...+..++ .|+.|+|.+|+|+...|..|..+.+|.+|++-.|++
T Consensus 296 ~~a~l~eL~L~~N~l~~v~~~~f~~ls---~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 296 GAAELQELYLTRNKLEFVSSGMFQGLS---GLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred chhhhhhhhcCcchHHHHHHHhhhccc---cceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 888888888888877643334444555 778888888888888777777778888888877765
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.80 E-value=1.6e-20 Score=170.63 Aligned_cols=259 Identities=25% Similarity=0.220 Sum_probs=187.6
Q ss_pred EEeCCCCCCCCCCCccccCCCCCCCEEeCcCCcccc----CcccccCCCCCCCEEEccCCCCCC-CC----CCcccCCCC
Q 040379 113 YLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEG----PIPSHLGNLSALQHLDLSLNHLFS-AG----NLDWLSHLS 183 (373)
Q Consensus 113 ~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~~~~-~~----~~~~~~~l~ 183 (373)
.|+|..+.+++......+..+.+|+.|+++++.++. .++..+...+.|++++++++.+.. .. ....+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 577888888765567777788899999999999853 356667788899999999998832 11 112567789
Q ss_pred CCCEEEccCccCCCCcchhhhhCCC---CCCcEEEccCCCCCCCCcccc-cCCCCC-CccCEEECCCCcCCCCchhHHH-
Q 040379 184 SLTYLDLGSNNLSRSTDWLQVVGNL---PLLTTLYLYRCHLPPIVPLSL-SNLNYS-TSLQFLELSENNLTNSIYPWLF- 257 (373)
Q Consensus 184 ~L~~L~l~~n~~~~~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~-~~l~~~-~~L~~L~ls~n~l~~~~~~~~~- 257 (373)
+|++|++++|.+... .+..+..+ ++|++|++++|++.+.....+ ..+..+ ++|++|++++|.+++.....+.
T Consensus 82 ~L~~L~l~~~~~~~~--~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 82 GLQELDLSDNALGPD--GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred ceeEEEccCCCCChh--HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 999999999998752 22333333 569999999999874222211 122223 7899999999999865443332
Q ss_pred --hccccCcEEEccCcccccc----ccccccCCCCCCEEEccCCcCccc----ccccccCCCCCCeEeCcCCcCcccCch
Q 040379 258 --NASSNLVLLGLDSNLLRGS----IPVAFKHMVSVSFLGLASNEFEGG----VPDFFGNMCSLTMLNISDNKLRGHFPE 327 (373)
Q Consensus 258 --~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~p~ 327 (373)
....+|++|++++|.+++. ++..+..+++|+.|++++|.+++. ++..+..+++|++|++++|.+++....
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~ 239 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA 239 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence 3334699999999999852 344556678999999999998753 344567789999999999999864333
Q ss_pred hhhc-cC-CCCccCEEECcCCcCccc----CchhhhCCCCCCEEeCcCCCCC
Q 040379 328 LIQN-LS-RFSSLKELYLENNRLNGF----TNNSIGQMSKLRTLSLNGNSLI 373 (373)
Q Consensus 328 ~~~~-l~-~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~lt 373 (373)
.+.. +. ..+.|++|++++|.+++. ....+..+++|+.+++++|+++
T Consensus 240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 3322 11 235899999999999732 2345667789999999999874
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.80 E-value=7.1e-19 Score=171.99 Aligned_cols=226 Identities=26% Similarity=0.242 Sum_probs=161.2
Q ss_pred cEEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCCccccCC-----------------CCCCCEEeCcC
Q 040379 81 HVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGS-----------------LTKLSYLDLSF 143 (373)
Q Consensus 81 ~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~-----------------l~~L~~L~L~~ 143 (373)
+++.|++..+ +++ .+|. ..++|++|++++|+++. +|....+ ...|+.|++++
T Consensus 223 ~L~~L~L~~N-----~Lt-~LP~---lp~~Lk~LdLs~N~Lts--LP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~ 291 (788)
T PRK15387 223 HITTLVIPDN-----NLT-SLPA---LPPELRTLEVSGNQLTS--LPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFG 291 (788)
T ss_pred CCCEEEccCC-----cCC-CCCC---CCCCCcEEEecCCccCc--ccCcccccceeeccCCchhhhhhchhhcCEEECcC
Confidence 4566666665 333 2333 24678888888887773 4432111 12344555555
Q ss_pred CccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCC
Q 040379 144 AEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPP 223 (373)
Q Consensus 144 n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 223 (373)
|+++ .+|. .+++|++|++++|++.... . -..+|+.|++++|.+...+.++ ++|++|++++|++++
T Consensus 292 N~Lt-~LP~---~p~~L~~LdLS~N~L~~Lp--~---lp~~L~~L~Ls~N~L~~LP~lp------~~Lq~LdLS~N~Ls~ 356 (788)
T PRK15387 292 NQLT-SLPV---LPPGLQELSVSDNQLASLP--A---LPSELCKLWAYNNQLTSLPTLP------SGLQELSVSDNQLAS 356 (788)
T ss_pred Cccc-cccc---cccccceeECCCCccccCC--C---CcccccccccccCccccccccc------cccceEecCCCccCC
Confidence 5555 3443 2368999999999984432 2 1246889999999998754322 579999999999986
Q ss_pred CCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEEEccCCcCcccccc
Q 040379 224 IVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPD 303 (373)
Q Consensus 224 ~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 303 (373)
+|.. . .+|+.|++++|.++ .+|.. ..+|+.|++++|.+++ +|.. .++|+.|++++|.+++ +|.
T Consensus 357 -LP~l---p---~~L~~L~Ls~N~L~-~LP~l----~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~ 419 (788)
T PRK15387 357 -LPTL---P---SELYKLWAYNNRLT-SLPAL----PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPM 419 (788)
T ss_pred -CCCC---C---cccceehhhccccc-cCccc----ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCc
Confidence 3432 1 57889999999998 56642 3469999999999984 5543 3689999999999984 665
Q ss_pred cccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCcccCchhh
Q 040379 304 FFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSI 356 (373)
Q Consensus 304 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~ 356 (373)
. ..+|+.|++++|+++ .+|..+..+. +|+.|+|++|++++..+..+
T Consensus 420 l---~~~L~~L~Ls~NqLt-~LP~sl~~L~---~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 420 L---PSGLLSLSVYRNQLT-RLPESLIHLS---SETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred c---hhhhhhhhhccCccc-ccChHHhhcc---CCCeEECCCCCCCchHHHHH
Confidence 3 357889999999998 7888877666 89999999999999877665
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=1.7e-18 Score=170.24 Aligned_cols=300 Identities=20% Similarity=0.277 Sum_probs=214.3
Q ss_pred CCCCCCcHHHHHHHHHHhhcCCCCCC---CCCCCCCCCCCCCCCcccc----------------eEecCCCCcEEEEEcC
Q 040379 28 NNIIRCIDEEREALLTFKESLVDESG---VLSSWGPEDEKRDCCKWTG----------------VGCSNRTGHVIKLEIQ 88 (373)
Q Consensus 28 ~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~w~~~~~~~~~c~w~~----------------v~c~~~~~~v~~l~l~ 88 (373)
.......++|.+.+.+..+.+..|.. .-..|. ...++|.-.. |.|. ++.|+.+.+.
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~---~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~--~~~vt~l~~~ 129 (754)
T PRK15370 55 HPPETASPEEIKSKFECLRMLAFPAYADNIQYSRG---GADQYCILSENSQEILSIVFNTEGYTVEGG--GKSVTYTRVT 129 (754)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCchhhccccccC---CCCcccccCCcchhhheeeecCCceEEecC--CCcccccccc
Confidence 34556788899999999888876632 223487 4677786544 5563 3456666655
Q ss_pred CCCCCCC-----C-----c------ceecC-------ccc-----cCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEe
Q 040379 89 PIDFDSF-----P-----L------RGTIS-------PAL-----LQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLD 140 (373)
Q Consensus 89 ~~~l~~~-----~-----l------~~~~~-------~~l-----~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~ 140 (373)
+.....- . . ....+ ..+ +...+.+.|++++++++. +|..+. ++|+.|+
T Consensus 130 g~~~~~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lts--LP~~Ip--~~L~~L~ 205 (754)
T PRK15370 130 ESEQASSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLTT--IPACIP--EQITTLI 205 (754)
T ss_pred cccccccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcCc--CCcccc--cCCcEEE
Confidence 5321100 0 0 00000 001 123567899999999884 676653 5899999
Q ss_pred CcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCC
Q 040379 141 LSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCH 220 (373)
Q Consensus 141 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~ 220 (373)
+++|+++ .+|..+. ++|++|++++|++.. .+..+ ..+|+.|++++|.+... |..+. .+|+.|++++|.
T Consensus 206 Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lts--LP~~l--~~~L~~L~Ls~N~L~~L---P~~l~--s~L~~L~Ls~N~ 273 (754)
T PRK15370 206 LDNNELK-SLPENLQ--GNIKTLYANSNQLTS--IPATL--PDTIQEMELSINRITEL---PERLP--SALQSLDLFHNK 273 (754)
T ss_pred ecCCCCC-cCChhhc--cCCCEEECCCCcccc--CChhh--hccccEEECcCCccCcC---ChhHh--CCCCEEECcCCc
Confidence 9999999 6777654 589999999999943 23222 34799999999998864 33332 589999999999
Q ss_pred CCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEEEccCCcCccc
Q 040379 221 LPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGG 300 (373)
Q Consensus 221 l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 300 (373)
+.. +|..+. ++|+.|++++|.++ .+|..+. ++|+.|++++|.++. +|..+. ++|+.|++++|.+++
T Consensus 274 L~~-LP~~l~-----~sL~~L~Ls~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~- 339 (754)
T PRK15370 274 ISC-LPENLP-----EELRYLSVYDNSIR-TLPAHLP---SGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALTS- 339 (754)
T ss_pred cCc-cccccC-----CCCcEEECCCCccc-cCcccch---hhHHHHHhcCCcccc-CCcccc--ccceeccccCCcccc-
Confidence 985 565432 58999999999998 5665432 359999999999984 565443 689999999999985
Q ss_pred ccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCcccCchhhhCCCCCCEEeCcCCCCC
Q 040379 301 VPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLI 373 (373)
Q Consensus 301 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~lt 373 (373)
+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|.++..++ .+. ++|+.|++++|+|+
T Consensus 340 LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp-----~~L~~LdLs~N~Lt~LP~-~l~--~sL~~LdLs~N~L~ 401 (754)
T PRK15370 340 LPASLP--PELQVLDVSKNQIT-VLPETLP-----PTITTLDVSRNALTNLPE-NLP--AALQIMQASRNNLV 401 (754)
T ss_pred CChhhc--CcccEEECCCCCCC-cCChhhc-----CCcCEEECCCCcCCCCCH-hHH--HHHHHHhhccCCcc
Confidence 666553 79999999999998 5676542 389999999999997544 444 37999999999874
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.78 E-value=9.6e-21 Score=180.78 Aligned_cols=267 Identities=27% Similarity=0.330 Sum_probs=205.4
Q ss_pred cEEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCC
Q 040379 81 HVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSAL 160 (373)
Q Consensus 81 ~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 160 (373)
.+..++++.+ .++ .+|.-++.+.+|+.++...|.++ .+|..+....+|++|++.+|.+. .+|....+.+.|
T Consensus 242 nl~~~dis~n-----~l~-~lp~wi~~~~nle~l~~n~N~l~--~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL 312 (1081)
T KOG0618|consen 242 NLQYLDISHN-----NLS-NLPEWIGACANLEALNANHNRLV--ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSL 312 (1081)
T ss_pred cceeeecchh-----hhh-cchHHHHhcccceEecccchhHH--hhHHHHhhhhhHHHHHhhhhhhh-hCCCccccccee
Confidence 3444444443 444 45678889999999999999996 58999999999999999999998 788888999999
Q ss_pred CEEEccCCCCCCCCCCcccCCCCC-CCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccC
Q 040379 161 QHLDLSLNHLFSAGNLDWLSHLSS-LTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQ 239 (373)
Q Consensus 161 ~~L~L~~n~~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~ 239 (373)
++|+|..|++... +...+..... |+.++.+.|++...+. ..-..++.|+.|++.+|+++...-+.+..+ .+|+
T Consensus 313 ~tLdL~~N~L~~l-p~~~l~v~~~~l~~ln~s~n~l~~lp~--~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~---~hLK 386 (1081)
T KOG0618|consen 313 RTLDLQSNNLPSL-PDNFLAVLNASLNTLNVSSNKLSTLPS--YEENNHAALQELYLANNHLTDSCFPVLVNF---KHLK 386 (1081)
T ss_pred eeeeehhcccccc-chHHHhhhhHHHHHHhhhhcccccccc--ccchhhHHHHHHHHhcCcccccchhhhccc---ccee
Confidence 9999999999332 2234444444 7888888888776542 233456779999999999987655555555 8999
Q ss_pred EEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCC
Q 040379 240 FLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDN 319 (373)
Q Consensus 240 ~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 319 (373)
.|++++|++. .+|......+..|+.|++++|+++ .+|..+..++.|++|...+|.+. .+| .+..++.|+.+|++.|
T Consensus 387 VLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N 462 (1081)
T KOG0618|consen 387 VLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCN 462 (1081)
T ss_pred eeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccc
Confidence 9999999997 788888888888999999999998 78899999999999999999998 677 6788999999999999
Q ss_pred cCccc-CchhhhccCCCCccCEEECcCCcCcccCchhhhCCCCCCEEeCcCC
Q 040379 320 KLRGH-FPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGN 370 (373)
Q Consensus 320 ~l~~~-~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 370 (373)
+++.. +|... +. ++|++||+++|.-....-..+..+..+...++.-|
T Consensus 463 ~L~~~~l~~~~---p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 463 NLSEVTLPEAL---PS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhhhhhhhhhC---CC-cccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 98743 33222 21 58999999999743333334555555555555443
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.69 E-value=4.1e-19 Score=154.98 Aligned_cols=254 Identities=24% Similarity=0.280 Sum_probs=186.1
Q ss_pred CCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccC-CCCCCCCCCcccCCCCCCCEE
Q 040379 110 RLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSL-NHLFSAGNLDWLSHLSSLTYL 188 (373)
Q Consensus 110 ~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~-n~~~~~~~~~~~~~l~~L~~L 188 (373)
.-..++|..|.|+.. .+..|+.+++|+.|||++|.|+..-|++|.++++|..|-+.+ |+|+. .....|.++..|+.|
T Consensus 68 ~tveirLdqN~I~~i-P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~-l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSI-PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD-LPKGAFGGLSSLQRL 145 (498)
T ss_pred cceEEEeccCCcccC-ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh-hhhhHhhhHHHHHHH
Confidence 347899999999976 677899999999999999999988899999999988776655 88833 334578999999999
Q ss_pred EccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCC-chhHHHhc--------
Q 040379 189 DLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNS-IYPWLFNA-------- 259 (373)
Q Consensus 189 ~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~-~~~~~~~~-------- 259 (373)
.+.-|++.-. ....+..++++..|.+.+|.+...--..+..+ ..++.+.+..|.+... -.++....
T Consensus 146 llNan~i~Ci--r~~al~dL~~l~lLslyDn~~q~i~~~tf~~l---~~i~tlhlA~np~icdCnL~wla~~~a~~~iet 220 (498)
T KOG4237|consen 146 LLNANHINCI--RQDALRDLPSLSLLSLYDNKIQSICKGTFQGL---AAIKTLHLAQNPFICDCNLPWLADDLAMNPIET 220 (498)
T ss_pred hcChhhhcch--hHHHHHHhhhcchhcccchhhhhhccccccch---hccchHhhhcCccccccccchhhhHHhhchhhc
Confidence 9999988775 34889999999999999998876544467777 7888888888874321 11111111
Q ss_pred --cccCcEEEccCccccccccccccC-CCCCCEEEccCCcCccccc-ccccCCCCCCeEeCcCCcCcccCchhhhccCCC
Q 040379 260 --SSNLVLLGLDSNLLRGSIPVAFKH-MVSVSFLGLASNEFEGGVP-DFFGNMCSLTMLNISDNKLRGHFPELIQNLSRF 335 (373)
Q Consensus 260 --~~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~ 335 (373)
..-.....+.+.++...-+..+.. ...+..=-.+.+...+..| ..|..+++|+.|+|++|++++.-+.+|....
T Consensus 221 sgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a-- 298 (498)
T KOG4237|consen 221 SGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAA-- 298 (498)
T ss_pred ccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchh--
Confidence 111112223333333222222221 1122221223333444444 5688999999999999999988778887777
Q ss_pred CccCEEECcCCcCcccCchhhhCCCCCCEEeCcCCCCC
Q 040379 336 SSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLI 373 (373)
Q Consensus 336 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~lt 373 (373)
.++.|.|..|++...-...|.++..|+.|++.+|+||
T Consensus 299 -~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it 335 (498)
T KOG4237|consen 299 -ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT 335 (498)
T ss_pred -hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE
Confidence 8999999999998877778999999999999999986
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=2.9e-19 Score=139.03 Aligned_cols=180 Identities=26% Similarity=0.422 Sum_probs=108.0
Q ss_pred CCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCC
Q 040379 132 SLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLL 211 (373)
Q Consensus 132 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L 211 (373)
.+.+.+.|.+++|+++ .+|..+..+.+|+.|++++|++ ...+..++.+++|+.|+++-|++.. .|..++.+|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqi--e~lp~~issl~klr~lnvgmnrl~~---lprgfgs~p-- 102 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQI--EELPTSISSLPKLRILNVGMNRLNI---LPRGFGSFP-- 102 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchh--hhcChhhhhchhhhheecchhhhhc---CccccCCCc--
Confidence 4567777778888887 6677777788888888888877 3445556677777777776666554 334444444
Q ss_pred cEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCC-chhHHHhccccCcEEEccCccccccccccccCCCCCCEE
Q 040379 212 TTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNS-IYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFL 290 (373)
Q Consensus 212 ~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 290 (373)
.|+.||+++|.+... +|..+|.... |+.|++++|.+. .+|..++++++|+.|
T Consensus 103 -------------------------~levldltynnl~e~~lpgnff~m~t-lralyl~dndfe-~lp~dvg~lt~lqil 155 (264)
T KOG0617|consen 103 -------------------------ALEVLDLTYNNLNENSLPGNFFYMTT-LRALYLGDNDFE-ILPPDVGKLTNLQIL 155 (264)
T ss_pred -------------------------hhhhhhccccccccccCCcchhHHHH-HHHHHhcCCCcc-cCChhhhhhcceeEE
Confidence 455555554444322 2333333333 566666666665 556666666667777
Q ss_pred EccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcC
Q 040379 291 GLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRL 348 (373)
Q Consensus 291 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l 348 (373)
.+..|.+- .+|..++.+..|++|++.+|+++ .+|+.++.+.-..+=+.+.+.+|..
T Consensus 156 ~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPw 211 (264)
T KOG0617|consen 156 SLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPW 211 (264)
T ss_pred eeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCC
Confidence 66666665 46666666666777777777666 4555555443222223444455544
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=1.7e-18 Score=134.74 Aligned_cols=165 Identities=28% Similarity=0.394 Sum_probs=100.5
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCC
Q 040379 105 LLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSS 184 (373)
Q Consensus 105 l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~ 184 (373)
+..+.+++.|.+++|+++ .+|..+..+.+|+.|++++|++. .+|..++.+++|+.|+++-|.+ ...+..|+.++.
T Consensus 29 Lf~~s~ITrLtLSHNKl~--~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl--~~lprgfgs~p~ 103 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT--VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL--NILPRGFGSFPA 103 (264)
T ss_pred ccchhhhhhhhcccCcee--ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhh--hcCccccCCCch
Confidence 335566677777777776 35666677777777777777776 6677777777777777777776 445556777777
Q ss_pred CCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCc
Q 040379 185 LTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLV 264 (373)
Q Consensus 185 L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~ 264 (373)
|+.|+++.|.+... .+|..+..+..|+.|++++|.+. .+|..++.+ ++|+.|.+..|.+. ++|.++..... |+
T Consensus 104 levldltynnl~e~-~lpgnff~m~tlralyl~dndfe-~lp~dvg~l---t~lqil~lrdndll-~lpkeig~lt~-lr 176 (264)
T KOG0617|consen 104 LEVLDLTYNNLNEN-SLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKL---TNLQILSLRDNDLL-SLPKEIGDLTR-LR 176 (264)
T ss_pred hhhhhccccccccc-cCCcchhHHHHHHHHHhcCCCcc-cCChhhhhh---cceeEEeeccCchh-hCcHHHHHHHH-HH
Confidence 77777777766543 23444444555555555555554 244555555 55666666655554 45555544444 55
Q ss_pred EEEccCcccccccccccc
Q 040379 265 LLGLDSNLLRGSIPVAFK 282 (373)
Q Consensus 265 ~L~l~~n~l~~~~~~~l~ 282 (373)
+|++.+|+++ .+|+.++
T Consensus 177 elhiqgnrl~-vlppel~ 193 (264)
T KOG0617|consen 177 ELHIQGNRLT-VLPPELA 193 (264)
T ss_pred HHhcccceee-ecChhhh
Confidence 5555555555 4444443
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.58 E-value=1.7e-14 Score=141.17 Aligned_cols=151 Identities=32% Similarity=0.475 Sum_probs=117.8
Q ss_pred CCCcHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCC----CcccceEecCC--C--CcEEEEEcCCCCCCCCCcceecC
Q 040379 31 IRCIDEEREALLTFKESLVDESGVLSSWGPEDEKRDC----CKWTGVGCSNR--T--GHVIKLEIQPIDFDSFPLRGTIS 102 (373)
Q Consensus 31 ~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~----c~w~~v~c~~~--~--~~v~~l~l~~~~l~~~~l~~~~~ 102 (373)
..+.++|..+|.++|.++.++.. .+|. +..| |.|.|+.|... . ..++.|+++++ .+.|.+|
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~~--~~W~----g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n-----~L~g~ip 435 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPLR--FGWN----GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQ-----GLRGFIP 435 (623)
T ss_pred cccCchHHHHHHHHHHhcCCccc--CCCC----CCCCCCcccccccceeeccCCCCceEEEEEECCCC-----CccccCC
Confidence 34677899999999998865532 3785 3333 27999999532 1 25888888775 7889999
Q ss_pred ccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCC-
Q 040379 103 PALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSH- 181 (373)
Q Consensus 103 ~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~- 181 (373)
..++.+++|+.|++++|.+.+. +|..++.+++|+.|++++|+++|.+|..++++++|++|++++|.+... .+..+..
T Consensus 436 ~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~-iP~~l~~~ 513 (623)
T PLN03150 436 NDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGR-VPAALGGR 513 (623)
T ss_pred HHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccccc-CChHHhhc
Confidence 9999999999999999999986 898999999999999999999999999999999999999999998322 2333333
Q ss_pred CCCCCEEEccCcc
Q 040379 182 LSSLTYLDLGSNN 194 (373)
Q Consensus 182 l~~L~~L~l~~n~ 194 (373)
..++..+++.+|.
T Consensus 514 ~~~~~~l~~~~N~ 526 (623)
T PLN03150 514 LLHRASFNFTDNA 526 (623)
T ss_pred cccCceEEecCCc
Confidence 2455666666664
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=2.1e-14 Score=127.39 Aligned_cols=212 Identities=27% Similarity=0.229 Sum_probs=119.8
Q ss_pred CCCCCCEEeCcCCccccCcc--cccCCCCCCCEEEccCCCCCCCCCC-cccCCCCCCCEEEccCccCCCCcchhhhhCCC
Q 040379 132 SLTKLSYLDLSFAEFEGPIP--SHLGNLSALQHLDLSLNHLFSAGNL-DWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNL 208 (373)
Q Consensus 132 ~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l 208 (373)
++.+|+...|.++.+. ..+ .....|++++.|||+.|-+...... .....+++|+.|+++.|++....+ ...-..+
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~-s~~~~~l 196 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS-SNTTLLL 196 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc-ccchhhh
Confidence 4567777777776665 222 2445677777777777766322221 245567777777777777654311 1222356
Q ss_pred CCCcEEEccCCCCCCCC-cccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCcccccc-ccccccCCCC
Q 040379 209 PLLTTLYLYRCHLPPIV-PLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGS-IPVAFKHMVS 286 (373)
Q Consensus 209 ~~L~~L~l~~n~l~~~~-~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~l~~ 286 (373)
+.|+.|.+++|+++... ......+ |+|+.|++.+|...+ +...-...++.|+.|+|++|.+-.. .-...+.++.
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~f---Psl~~L~L~~N~~~~-~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTF---PSLEVLYLEANEIIL-IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPG 272 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhC---CcHHHhhhhcccccc-eecchhhhhhHHhhccccCCcccccccccccccccc
Confidence 67777777777766321 1222233 777777777774111 1111112233377777777776521 1134566777
Q ss_pred CCEEEccCCcCccc-cccc-----ccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCccc
Q 040379 287 VSFLGLASNEFEGG-VPDF-----FGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGF 351 (373)
Q Consensus 287 L~~L~L~~n~l~~~-~~~~-----l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~ 351 (373)
|+.|+++.+.+... .|+. ...+++|++|++..|++.++ ..+.++...++|+.|.+..|.++..
T Consensus 273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w--~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDW--RSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccc--cccchhhccchhhhhhccccccccc
Confidence 77777777776532 2222 23557777777777777643 3445555555677777767766543
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=2.2e-14 Score=127.27 Aligned_cols=214 Identities=26% Similarity=0.254 Sum_probs=157.1
Q ss_pred cCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCcccc--CcccccCCCCCCCEEEccCCCCCCCCCCcccCCCC
Q 040379 106 LQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEG--PIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLS 183 (373)
Q Consensus 106 ~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 183 (373)
.++.+|+.+.+.++.+...........|++++.|||+.|-+.. .+-.....+|+|+.|+++.|.+........-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 4578999999999988743222466789999999999997763 23344578999999999999983322222234678
Q ss_pred CCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccC
Q 040379 184 SLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNL 263 (373)
Q Consensus 184 ~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L 263 (373)
.|+.|.++.|.++ ..++...+..+|+|+.|++..|............+ ..|++|||++|.+...-.......++.|
T Consensus 198 ~lK~L~l~~CGls-~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~---~~L~~LdLs~N~li~~~~~~~~~~l~~L 273 (505)
T KOG3207|consen 198 HLKQLVLNSCGLS-WKDVQWILLTFPSLEVLYLEANEIILIKATSTKIL---QTLQELDLSNNNLIDFDQGYKVGTLPGL 273 (505)
T ss_pred hhheEEeccCCCC-HHHHHHHHHhCCcHHHhhhhcccccceecchhhhh---hHHhhccccCCcccccccccccccccch
Confidence 9999999999998 34566778889999999999996433333334444 7899999999987633222333456669
Q ss_pred cEEEccCcccccc-cccc-----ccCCCCCCEEEccCCcCccc-ccccccCCCCCCeEeCcCCcCcc
Q 040379 264 VLLGLDSNLLRGS-IPVA-----FKHMVSVSFLGLASNEFEGG-VPDFFGNMCSLTMLNISDNKLRG 323 (373)
Q Consensus 264 ~~L~l~~n~l~~~-~~~~-----l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~ 323 (373)
+.|+++.+.+... .|+. ...+++|++|++..|++.+. ....+..+++|+.|.+..|.++.
T Consensus 274 ~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 274 NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 9999999988753 3433 35678999999999999631 22345567888999998998874
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.37 E-value=2.1e-14 Score=131.33 Aligned_cols=176 Identities=28% Similarity=0.312 Sum_probs=110.7
Q ss_pred CCCCCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCC
Q 040379 157 LSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYST 236 (373)
Q Consensus 157 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~ 236 (373)
+.--...|++.|++ ...+..+..+..|+.+.++.|.+.. ++..++++..|..++++.|+++. .|..+..+
T Consensus 74 ltdt~~aDlsrNR~--~elp~~~~~f~~Le~liLy~n~~r~---ip~~i~~L~~lt~l~ls~NqlS~-lp~~lC~l---- 143 (722)
T KOG0532|consen 74 LTDTVFADLSRNRF--SELPEEACAFVSLESLILYHNCIRT---IPEAICNLEALTFLDLSSNQLSH-LPDGLCDL---- 143 (722)
T ss_pred ccchhhhhcccccc--ccCchHHHHHHHHHHHHHHhcccee---cchhhhhhhHHHHhhhccchhhc-CChhhhcC----
Confidence 33345667777777 3334445556667777777776665 44666677777777777776654 44455554
Q ss_pred ccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeC
Q 040379 237 SLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNI 316 (373)
Q Consensus 237 ~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 316 (373)
-|+.|-+++|+++ .+|+.+. ....|..|+.+.|.+. .+|..++.+.+|+.|.+..|++. .+|+.+..+ .|..||+
T Consensus 144 pLkvli~sNNkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDf 218 (722)
T KOG0532|consen 144 PLKVLIVSNNKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDF 218 (722)
T ss_pred cceeEEEecCccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeec
Confidence 4667777777766 5666666 4444667777777666 55666666677777777777666 455555533 4666777
Q ss_pred cCCcCcccCchhhhccCCCCccCEEECcCCcCccc
Q 040379 317 SDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGF 351 (373)
Q Consensus 317 ~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~ 351 (373)
++|+++ .+|-.+..+. .|++|-|.+|.+...
T Consensus 219 ScNkis-~iPv~fr~m~---~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 219 SCNKIS-YLPVDFRKMR---HLQVLQLENNPLQSP 249 (722)
T ss_pred ccCcee-ecchhhhhhh---hheeeeeccCCCCCC
Confidence 777776 5666665555 677777777776553
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.37 E-value=1.6e-13 Score=118.67 Aligned_cols=94 Identities=35% Similarity=0.369 Sum_probs=61.8
Q ss_pred ccccCCCCCCEEeCCCCCCCCC---CCccccCCCCCCCEEeCcCCcccc----Ccccc-------cCCCCCCCEEEccCC
Q 040379 103 PALLQLHRLTYLDLSLNNFSGS---PIPEFIGSLTKLSYLDLSFAEFEG----PIPSH-------LGNLSALQHLDLSLN 168 (373)
Q Consensus 103 ~~l~~l~~L~~L~l~~n~l~~~---~~~~~l~~l~~L~~L~L~~n~l~~----~~p~~-------l~~l~~L~~L~L~~n 168 (373)
+.+..+..++.+++++|.|... .+...+.+.++|+..+++.- ++| .+|+. +..+++|+++|||.|
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 4455678889999999988643 13344566678888888653 222 34433 346678888888888
Q ss_pred CCCCCCCCc---ccCCCCCCCEEEccCccCCC
Q 040379 169 HLFSAGNLD---WLSHLSSLTYLDLGSNNLSR 197 (373)
Q Consensus 169 ~~~~~~~~~---~~~~l~~L~~L~l~~n~~~~ 197 (373)
-+...+... .+.++..|++|.+.+|.+..
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~ 134 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGP 134 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCCCh
Confidence 884433322 45667778888887777654
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.37 E-value=3.2e-14 Score=130.11 Aligned_cols=196 Identities=30% Similarity=0.395 Sum_probs=146.3
Q ss_pred CCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCC
Q 040379 107 QLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLT 186 (373)
Q Consensus 107 ~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 186 (373)
.+..-...|++.|++. .+|..++.+..|+.+.+..|.+. .+|..+.++..|.++|++.|++ ...+..+..+ -|+
T Consensus 73 ~ltdt~~aDlsrNR~~--elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nql--S~lp~~lC~l-pLk 146 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS--ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQL--SHLPDGLCDL-PLK 146 (722)
T ss_pred cccchhhhhccccccc--cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchh--hcCChhhhcC-cce
Confidence 4555567788888887 57888888888888888888887 7888888888899999998888 3333333433 478
Q ss_pred EEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEE
Q 040379 187 YLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLL 266 (373)
Q Consensus 187 ~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L 266 (373)
.|-+++|+++. ++..++..+.|..|+.+.|.+.. +|..++.+ .+|+.|.+..|.+. .+|+++. .++ |..|
T Consensus 147 vli~sNNkl~~---lp~~ig~~~tl~~ld~s~nei~s-lpsql~~l---~slr~l~vrRn~l~-~lp~El~-~Lp-Li~l 216 (722)
T KOG0532|consen 147 VLIVSNNKLTS---LPEEIGLLPTLAHLDVSKNEIQS-LPSQLGYL---TSLRDLNVRRNHLE-DLPEELC-SLP-LIRL 216 (722)
T ss_pred eEEEecCcccc---CCcccccchhHHHhhhhhhhhhh-chHHhhhH---HHHHHHHHhhhhhh-hCCHHHh-CCc-eeee
Confidence 88888888876 45677778888888888888764 56666777 78888888888877 6777776 555 8888
Q ss_pred EccCccccccccccccCCCCCCEEEccCCcCccccccccc---CCCCCCeEeCcCCc
Q 040379 267 GLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFG---NMCSLTMLNISDNK 320 (373)
Q Consensus 267 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~L~~n~ 320 (373)
|++.|+++ .+|-.|.+++.|++|.|.+|.+. ..|..+. ...-.++|+...|+
T Consensus 217 DfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 217 DFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 88888887 77888888888888888888887 3444332 23345666766664
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.33 E-value=6.6e-13 Score=107.55 Aligned_cols=125 Identities=23% Similarity=0.292 Sum_probs=44.2
Q ss_pred CccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEEEccCCcCcccccccc-cCCCCCCeE
Q 040379 236 TSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFF-GNMCSLTML 314 (373)
Q Consensus 236 ~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L 314 (373)
.++++|++.+|.++ .+ +.+...+.+|+.|++++|.++. +. .+..+++|+.|++++|.++. +.+.+ ..+|+|++|
T Consensus 19 ~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EE
T ss_pred cccccccccccccc-cc-cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCc-cccchHHhCCcCCEE
Confidence 45666666666665 22 2333334457777777777663 22 35667778888888887774 33323 356778888
Q ss_pred eCcCCcCcccCchhhhccCCCCccCEEECcCCcCcccC---chhhhCCCCCCEEeC
Q 040379 315 NISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFT---NNSIGQMSKLRTLSL 367 (373)
Q Consensus 315 ~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~l 367 (373)
++++|+|.+. ..+..+..+++|+.|++.+|+++... ...+..+|+|+.||-
T Consensus 94 ~L~~N~I~~l--~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 94 YLSNNKISDL--NELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp E-TTS---SC--CCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred ECcCCcCCCh--HHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 8888877643 23455556668888888888776553 224566778877764
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.31 E-value=1.7e-13 Score=118.49 Aligned_cols=168 Identities=23% Similarity=0.226 Sum_probs=94.6
Q ss_pred CcEEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCC---CCc-------cccCCCCCCCEEeCcCCccccC
Q 040379 80 GHVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGS---PIP-------EFIGSLTKLSYLDLSFAEFEGP 149 (373)
Q Consensus 80 ~~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~---~~~-------~~l~~l~~L~~L~L~~n~l~~~ 149 (373)
..++.++++++.+..-. ...+.+.+.+.++|+..++++- ++|. .+| +.+-.+++|++|+||.|.|.-.
T Consensus 30 ~s~~~l~lsgnt~G~EA-a~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEA-ARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred CceEEEeccCCchhHHH-HHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 45778888876321100 1123345666778888887753 3332 122 2344567888888888877644
Q ss_pred cccc----cCCCCCCCEEEccCCCCCCCCCC------------cccCCCCCCCEEEccCccCCCC--cchhhhhCCCCCC
Q 040379 150 IPSH----LGNLSALQHLDLSLNHLFSAGNL------------DWLSHLSSLTYLDLGSNNLSRS--TDWLQVVGNLPLL 211 (373)
Q Consensus 150 ~p~~----l~~l~~L~~L~L~~n~~~~~~~~------------~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~~l~~L 211 (373)
.+.. +..+..|++|.|.+|.+...+.- .-.+.-++|+++....|++... ..+...+...+.|
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL 187 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence 3332 35678888888888877322111 1234456677777777766543 2244555666677
Q ss_pred cEEEccCCCCCCCCc-ccccCCCCCCccCEEECCCCcCC
Q 040379 212 TTLYLYRCHLPPIVP-LSLSNLNYSTSLQFLELSENNLT 249 (373)
Q Consensus 212 ~~L~l~~n~l~~~~~-~~~~~l~~~~~L~~L~ls~n~l~ 249 (373)
+.+.+.+|.+..... .....+..+++|++||+..|.++
T Consensus 188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 777777666542211 11222333466666666666655
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.29 E-value=8.1e-13 Score=112.21 Aligned_cols=127 Identities=27% Similarity=0.400 Sum_probs=85.3
Q ss_pred CccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEe
Q 040379 236 TSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLN 315 (373)
Q Consensus 236 ~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 315 (373)
..|+++|+++|.++ .+..++ ...+.++.|++++|.+. .+. .+..+++|+.|||++|.++ .+..+-.++-++++|.
T Consensus 284 q~LtelDLS~N~I~-~iDESv-KL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESV-KLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred hhhhhccccccchh-hhhhhh-hhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 66778888888776 444443 34455888888888776 332 3677778888888888776 3444445666778888
Q ss_pred CcCCcCcccCchhhhccCCCCccCEEECcCCcCcccC-chhhhCCCCCCEEeCcCCCC
Q 040379 316 ISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFT-NNSIGQMSKLRTLSLNGNSL 372 (373)
Q Consensus 316 L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l 372 (373)
|++|.+.+ ++.+..+-+|..||+++|+|.... ...++++|.|+.+.+.+|++
T Consensus 359 La~N~iE~-----LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 359 LAQNKIET-----LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhhhHhh-----hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 88877753 233344447788888888775432 34677788888888888876
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.28 E-value=8.2e-12 Score=116.83 Aligned_cols=201 Identities=29% Similarity=0.401 Sum_probs=154.4
Q ss_pred CEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCC-CCCEEEccCccCCCCcchhhhhCCCCCCcEEE
Q 040379 137 SYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLS-SLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLY 215 (373)
Q Consensus 137 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~ 215 (373)
..+++..+.+... +..+..++.++.|++.+|.+. ..++...... +|+.|++++|.+.. ++..++.+++|+.|+
T Consensus 96 ~~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~--~i~~~~~~~~~nL~~L~l~~N~i~~---l~~~~~~l~~L~~L~ 169 (394)
T COG4886 96 PSLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT--DIPPLIGLLKSNLKELDLSDNKIES---LPSPLRNLPNLKNLD 169 (394)
T ss_pred ceeeccccccccC-chhhhcccceeEEecCCcccc--cCccccccchhhcccccccccchhh---hhhhhhccccccccc
Confidence 3688888877422 344556688999999999993 3334445553 99999999999886 346789999999999
Q ss_pred ccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEEEccCC
Q 040379 216 LYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASN 295 (373)
Q Consensus 216 l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 295 (373)
+++|++... |...+.. +.|+.|++++|++. .+|... .....|+++.+++|... ..+..+..+.++..+.+.+|
T Consensus 170 l~~N~l~~l-~~~~~~~---~~L~~L~ls~N~i~-~l~~~~-~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n 242 (394)
T COG4886 170 LSFNDLSDL-PKLLSNL---SNLNNLDLSGNKIS-DLPPEI-ELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNN 242 (394)
T ss_pred cCCchhhhh-hhhhhhh---hhhhheeccCCccc-cCchhh-hhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCc
Confidence 999999864 3333344 89999999999998 677654 23344999999999644 46667888899999999999
Q ss_pred cCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCcccCchhh
Q 040379 296 EFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSI 356 (373)
Q Consensus 296 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~ 356 (373)
++. ..+..++.++++++|++++|.++. ++. +..+ .+++.|++++|.++...+...
T Consensus 243 ~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~---~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 243 KLE-DLPESIGNLSNLETLDLSNNQISS-ISS-LGSL---TNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred eee-eccchhccccccceeccccccccc-ccc-cccc---CccCEEeccCccccccchhhh
Confidence 887 347778888999999999999984 333 4444 489999999999988776543
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.28 E-value=1.1e-11 Score=115.94 Aligned_cols=200 Identities=31% Similarity=0.421 Sum_probs=155.6
Q ss_pred EEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCC-CCCEEEccCCCCCCCCCCcccCCCCCCCEEEcc
Q 040379 113 YLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLS-ALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLG 191 (373)
Q Consensus 113 ~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~ 191 (373)
.+++..+.+.. ....+..++.++.|++.+|.++ .+|....... +|+.|++++|++.. .+..+..+++|+.|+++
T Consensus 97 ~l~~~~~~~~~--~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~ 171 (394)
T COG4886 97 SLDLNLNRLRS--NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLS 171 (394)
T ss_pred eeecccccccc--CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhh--hhhhhhccccccccccC
Confidence 57888877643 3344556688999999999999 6787777774 99999999999933 22457899999999999
Q ss_pred CccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCc
Q 040379 192 SNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSN 271 (373)
Q Consensus 192 ~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n 271 (373)
+|++.. ++...+..+.|+.|++++|.+.. +|...... ..|+++++++|... ..+..+... .++..+.+.+|
T Consensus 172 ~N~l~~---l~~~~~~~~~L~~L~ls~N~i~~-l~~~~~~~---~~L~~l~~~~N~~~-~~~~~~~~~-~~l~~l~l~~n 242 (394)
T COG4886 172 FNDLSD---LPKLLSNLSNLNNLDLSGNKISD-LPPEIELL---SALEELDLSNNSII-ELLSSLSNL-KNLSGLELSNN 242 (394)
T ss_pred Cchhhh---hhhhhhhhhhhhheeccCCcccc-Cchhhhhh---hhhhhhhhcCCcce-ecchhhhhc-ccccccccCCc
Confidence 999987 44555589999999999999986 44443333 56999999999644 344444443 44888889999
Q ss_pred cccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhh
Q 040379 272 LLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELI 329 (373)
Q Consensus 272 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~ 329 (373)
++. ..+..++.++++++|++++|.++. ++. ++...+++.|++++|.+....|...
T Consensus 243 ~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 243 KLE-DLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred eee-eccchhccccccceeccccccccc-ccc-ccccCccCEEeccCccccccchhhh
Confidence 887 447778899999999999999995 333 8889999999999999986655543
No 34
>PLN03150 hypothetical protein; Provisional
Probab=99.25 E-value=1.6e-11 Score=120.47 Aligned_cols=106 Identities=30% Similarity=0.510 Sum_probs=79.6
Q ss_pred CcEEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEE
Q 040379 263 LVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELY 342 (373)
Q Consensus 263 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~ 342 (373)
++.|++++|.+.|.+|..++.+++|+.|+|++|.+.|.+|..+..+++|+.|+|++|+++|.+|+.++.++ +|+.|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~---~L~~L~ 496 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT---SLRILN 496 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCC---CCCEEE
Confidence 56777777777777777777778888888888888777777777778888888888888777777766555 778888
Q ss_pred CcCCcCcccCchhhhCC-CCCCEEeCcCCC
Q 040379 343 LENNRLNGFTNNSIGQM-SKLRTLSLNGNS 371 (373)
Q Consensus 343 L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~ 371 (373)
|++|.++|.+|..+... .++..+++.+|+
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcCCcccccCChHHhhccccCceEEecCCc
Confidence 88888877777766653 456667777664
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.12 E-value=8.3e-11 Score=95.35 Aligned_cols=62 Identities=26% Similarity=0.228 Sum_probs=18.9
Q ss_pred CccCEEECCCCcCCCCchhHHHhccccCcEEEccCcccccc-ccccccCCCCCCEEEccCCcCc
Q 040379 236 TSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGS-IPVAFKHMVSVSFLGLASNEFE 298 (373)
Q Consensus 236 ~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~ 298 (373)
++|++|++++|.++ .+.+.+...+++|+.|++++|++... --..+..+++|+.|++.+|.++
T Consensus 64 ~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 64 PRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred hhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 55555555555555 23333323334455555555555421 1123444555555555555554
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.10 E-value=3.1e-11 Score=102.74 Aligned_cols=207 Identities=26% Similarity=0.242 Sum_probs=127.5
Q ss_pred ecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCC-CCC-CCc
Q 040379 100 TISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLF-SAG-NLD 177 (373)
Q Consensus 100 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~-~~~-~~~ 177 (373)
.+|..+.-+++|..+.++.+.-.. +.+.-..=+.|+++.+.+..++ ..|. +-....+ .|...-.-. ..+ ...
T Consensus 205 ~l~f~l~~f~~l~~~~~s~~~~~~--i~~~~~~kptl~t~~v~~s~~~-~~~~-l~pe~~~--~D~~~~E~~t~~G~~~~ 278 (490)
T KOG1259|consen 205 RLSFNLNAFRNLKTLKFSALSTEN--IVDIELLKPTLQTICVHNTTIQ-DVPS-LLPETIL--ADPSGSEPSTSNGSALV 278 (490)
T ss_pred ccccchHHhhhhheeeeeccchhh--eeceeecCchhheeeeeccccc-cccc-ccchhhh--cCccCCCCCccCCceEE
Confidence 455566667888888888775332 2222222367888887766554 2221 1111111 122211110 011 111
Q ss_pred ccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHH
Q 040379 178 WLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLF 257 (373)
Q Consensus 178 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~ 257 (373)
....-..|+++++++|.++. +.+...-.|.++.|++++|.+..... ++.+ ++|+.||+++|.++ .+ ..+.
T Consensus 279 ~~dTWq~LtelDLS~N~I~~---iDESvKL~Pkir~L~lS~N~i~~v~n--La~L---~~L~~LDLS~N~Ls-~~-~Gwh 348 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLITQ---IDESVKLAPKLRRLILSQNRIRTVQN--LAEL---PQLQLLDLSGNLLA-EC-VGWH 348 (490)
T ss_pred ecchHhhhhhccccccchhh---hhhhhhhccceeEEeccccceeeehh--hhhc---ccceEeecccchhH-hh-hhhH
Confidence 23344678889999988876 44667778889999999888764322 4444 88899999998876 33 2334
Q ss_pred hccccCcEEEccCccccccccccccCCCCCCEEEccCCcCccc-ccccccCCCCCCeEeCcCCcCccc
Q 040379 258 NASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGG-VPDFFGNMCSLTMLNISDNKLRGH 324 (373)
Q Consensus 258 ~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~ 324 (373)
..+-++++|.++.|.+.. -..++.+-+|..||+++|++... -...++++|.|+.+.|.+|.+.+.
T Consensus 349 ~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 445568888888887752 23466777788888888888642 234577888888888888887743
No 37
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=9.3e-11 Score=99.68 Aligned_cols=203 Identities=21% Similarity=0.210 Sum_probs=113.5
Q ss_pred CCEEEccCCCCCCCCCCccc-CCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCcc
Q 040379 160 LQHLDLSLNHLFSAGNLDWL-SHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSL 238 (373)
Q Consensus 160 L~~L~L~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L 238 (373)
++.+.+.++.+.+.+....+ ..++.++++++.+|.++.+.++...+.++|.|+.|+++.|.+...+-..-..+ .+|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~---~nl 123 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPL---KNL 123 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccc---cce
Confidence 33444444444333332222 23455566666666665555555555666666666666665543322111122 455
Q ss_pred CEEECCCCcCCCCchhHHHhccccCcEEEccCccccc-----------------------------cccccccCCCCCCE
Q 040379 239 QFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRG-----------------------------SIPVAFKHMVSVSF 289 (373)
Q Consensus 239 ~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~-----------------------------~~~~~l~~l~~L~~ 289 (373)
+.|-+.+..+...........++.++.|+++.|.+.. .+......++++..
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~s 203 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNS 203 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchh
Confidence 5555555554433333333334445555555542210 01111123567777
Q ss_pred EEccCCcCcccc-cccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCcccCch------hhhCCCCC
Q 040379 290 LGLASNEFEGGV-PDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNN------SIGQMSKL 362 (373)
Q Consensus 290 L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~------~~~~l~~L 362 (373)
+-+..|.+...- -+....+|.+-.|+|+.|+|..+ +.+..+..++.|..|.++++++.+.... .++.++++
T Consensus 204 v~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idsw--asvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v 281 (418)
T KOG2982|consen 204 VFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSW--ASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKV 281 (418)
T ss_pred eeeecCcccchhhcccCCCCCcchhhhhcccccccH--HHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccce
Confidence 777777665322 23345567788899999999866 6677888889999999999988655422 24677888
Q ss_pred CEEeC
Q 040379 363 RTLSL 367 (373)
Q Consensus 363 ~~L~l 367 (373)
+.|+=
T Consensus 282 ~vLNG 286 (418)
T KOG2982|consen 282 QVLNG 286 (418)
T ss_pred EEecC
Confidence 88763
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.05 E-value=1.4e-11 Score=115.72 Aligned_cols=197 Identities=30% Similarity=0.340 Sum_probs=102.7
Q ss_pred CCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCC
Q 040379 107 QLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLT 186 (373)
Q Consensus 107 ~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 186 (373)
.+..++.+++..|.+.. .-..++.+.+|+.|++..|++.. +...+..+++|++|++++|.|... ..+..++.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i---~~l~~l~~L~ 143 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL---EGLSTLTLLK 143 (414)
T ss_pred HhHhHHhhccchhhhhh--hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc---cchhhccchh
Confidence 34555555566665552 23335556667777777776663 322255666777777777776332 3345555577
Q ss_pred EEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEE
Q 040379 187 YLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLL 266 (373)
Q Consensus 187 ~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L 266 (373)
.|++.+|.+... ..+..++.|+.+++++|.+....+.....+ .+++.+++.+|.+.. +.. ......+..+
T Consensus 144 ~L~l~~N~i~~~----~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~---~~l~~l~l~~n~i~~-i~~--~~~~~~l~~~ 213 (414)
T KOG0531|consen 144 ELNLSGNLISDI----SGLESLKSLKLLDLSYNRIVDIENDELSEL---ISLEELDLGGNSIRE-IEG--LDLLKKLVLL 213 (414)
T ss_pred hheeccCcchhc----cCCccchhhhcccCCcchhhhhhhhhhhhc---cchHHHhccCCchhc-ccc--hHHHHHHHHh
Confidence 777777766654 233446667777777776654433102333 566666666666542 111 1111113333
Q ss_pred EccCccccccccccccCCC--CCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCc
Q 040379 267 GLDSNLLRGSIPVAFKHMV--SVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLR 322 (373)
Q Consensus 267 ~l~~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 322 (373)
++..|.++..-+ +..+. .|+.+++++|.+.. .+..+..+..+..+++..|++.
T Consensus 214 ~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 214 SLLDNKISKLEG--LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred hcccccceeccC--cccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccc
Confidence 555555542111 11122 25566666666552 2233445556666666666554
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.90 E-value=5e-10 Score=112.63 Aligned_cols=110 Identities=35% Similarity=0.393 Sum_probs=72.0
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCC
Q 040379 105 LLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSS 184 (373)
Q Consensus 105 l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~ 184 (373)
|..++.|++||+++|.--+ .+|..++.+-+||+|+++++.+. .+|..+.++..|.+|++..+...... +.....+++
T Consensus 567 f~~m~~LrVLDLs~~~~l~-~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~ 643 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLS-KLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQS 643 (889)
T ss_pred HhhCcceEEEECCCCCccC-cCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccc-cchhhhccc
Confidence 5668888888888764433 48888888888888888888887 77888888888888888776652221 233445778
Q ss_pred CCEEEccCccCCCCcchhhhhCCCCCCcEEEcc
Q 040379 185 LTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLY 217 (373)
Q Consensus 185 L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~ 217 (373)
|++|.+..-...........+..+.+|+.+...
T Consensus 644 Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 644 LRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred ccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 888877665433222233444555555555443
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.89 E-value=9.8e-10 Score=73.34 Aligned_cols=61 Identities=34% Similarity=0.517 Sum_probs=36.1
Q ss_pred CCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCcccCchhhhCCCCCCEEeCcCCCC
Q 040379 309 CSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 372 (373)
Q Consensus 309 ~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 372 (373)
|+|++|++++|+++...+..+..++ +|++|++++|.++...+..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~---~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLP---NLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGT---TESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCC---CCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3556666666666633333443333 666666666666666666666666666666666654
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=3.8e-11 Score=102.02 Aligned_cols=181 Identities=23% Similarity=0.178 Sum_probs=89.2
Q ss_pred CCCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCC-CCCCC-cccccCCCCCC
Q 040379 159 ALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCH-LPPIV-PLSLSNLNYST 236 (373)
Q Consensus 159 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~~~ 236 (373)
+||++||++..++.......+..|.+|+.|.+.++++.+ ++...+.+-.+|+.++++.+. ++... ..-+.++ +
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD--~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~sc---s 260 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD--PIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSC---S 260 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc--HHHHHHhccccceeeccccccccchhHHHHHHHhh---h
Confidence 355555555555222222234555556666666555554 344555555556666655542 11100 0112222 5
Q ss_pred ccCEEECCCCcCCCCchh-HHHhccccCcEEEccCcccc---ccccccccCCCCCCEEEccCCc-CcccccccccCCCCC
Q 040379 237 SLQFLELSENNLTNSIYP-WLFNASSNLVLLGLDSNLLR---GSIPVAFKHMVSVSFLGLASNE-FEGGVPDFFGNMCSL 311 (373)
Q Consensus 237 ~L~~L~ls~n~l~~~~~~-~~~~~~~~L~~L~l~~n~l~---~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L 311 (373)
.|..|++++|.++.+.-. .+....++|+.|+++++.-. ..+..-...+++|..|||++|. ++......+.+++.|
T Consensus 261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L 340 (419)
T KOG2120|consen 261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL 340 (419)
T ss_pred hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence 566666666654432211 22222334666666654311 1222223456666666666653 333344455566666
Q ss_pred CeEeCcCCcCcccCchhhhccCCCCccCEEECcCC
Q 040379 312 TMLNISDNKLRGHFPELIQNLSRFSSLKELYLENN 346 (373)
Q Consensus 312 ~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n 346 (373)
++|.++.|.. .+|..+-.+...|+|.+|++.++
T Consensus 341 ~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 341 QHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 6666666543 34555555566666666666554
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.87 E-value=1.7e-09 Score=72.20 Aligned_cols=58 Identities=31% Similarity=0.460 Sum_probs=29.6
Q ss_pred CcEEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCc
Q 040379 263 LVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNK 320 (373)
Q Consensus 263 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 320 (373)
|++|++++|+++...+..|..+++|++|++++|.++...+..|.++++|++|++++|+
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4455555555543333444555555555555555554444455555555555555554
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.86 E-value=3.5e-10 Score=106.19 Aligned_cols=232 Identities=28% Similarity=0.285 Sum_probs=159.9
Q ss_pred ccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCC
Q 040379 103 PALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHL 182 (373)
Q Consensus 103 ~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l 182 (373)
..+..+.+|+.|++.+|.+.. +...+..+++|++|++++|.++.. ..+..++.|+.|++++|.+.. ...+..+
T Consensus 89 ~~l~~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~---~~~~~~l 161 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISD---ISGLESL 161 (414)
T ss_pred cccccccceeeeeccccchhh--cccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchh---ccCCccc
Confidence 346778999999999999985 444477899999999999999854 236677889999999999943 3445669
Q ss_pred CCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhcccc
Q 040379 183 SSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSN 262 (373)
Q Consensus 183 ~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~ 262 (373)
+.|+.+++++|.+...... . ...+.+++.+.+.+|.+.... .+..+ ..+..+++..|.++-.-+....... +
T Consensus 162 ~~L~~l~l~~n~i~~ie~~-~-~~~~~~l~~l~l~~n~i~~i~--~~~~~---~~l~~~~l~~n~i~~~~~l~~~~~~-~ 233 (414)
T KOG0531|consen 162 KSLKLLDLSYNRIVDIEND-E-LSELISLEELDLGGNSIREIE--GLDLL---KKLVLLSLLDNKISKLEGLNELVML-H 233 (414)
T ss_pred hhhhcccCCcchhhhhhhh-h-hhhccchHHHhccCCchhccc--chHHH---HHHHHhhcccccceeccCcccchhH-H
Confidence 9999999999999875221 1 588899999999999876432 22222 4555567777776621111100000 3
Q ss_pred CcEEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhc--cCCCCccCE
Q 040379 263 LVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQN--LSRFSSLKE 340 (373)
Q Consensus 263 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~--l~~~~~L~~ 340 (373)
|+.+++++|++. ..+..+..+..+..|++.+|++... ..+...+.+..+....+.+.... ..... .+..+.++.
T Consensus 234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 309 (414)
T KOG0531|consen 234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSE-AISQEYITSAAPTLVT 309 (414)
T ss_pred HHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchh-hhhccccccccccccc
Confidence 788889998887 3435667788889999999888742 22345567777777777766321 11111 334457888
Q ss_pred EECcCCcCcccCc
Q 040379 341 LYLENNRLNGFTN 353 (373)
Q Consensus 341 L~L~~n~l~~~~~ 353 (373)
+.+.+|.+....+
T Consensus 310 ~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 310 LTLELNPIRKISS 322 (414)
T ss_pred cccccCccccccc
Confidence 8888887766543
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=1.9e-11 Score=103.87 Aligned_cols=180 Identities=22% Similarity=0.222 Sum_probs=112.7
Q ss_pred CCCEEeCcCCcccc-CcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcE
Q 040379 135 KLSYLDLSFAEFEG-PIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTT 213 (373)
Q Consensus 135 ~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~ 213 (373)
.|++|||++..++. .+-..+..|.+|+.|.+.++++ +......+++-.+|+.++++.+.--......-.+.+++.|.+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~L-dD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRL-DDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhcccccccc-CcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 47777777766652 1222345667777777777776 223333566667777777776643222233445677777788
Q ss_pred EEccCCCCCCCCc-ccccCCCCCCccCEEECCCCc--CCCCchhHHHhccccCcEEEccCcc-ccccccccccCCCCCCE
Q 040379 214 LYLYRCHLPPIVP-LSLSNLNYSTSLQFLELSENN--LTNSIYPWLFNASSNLVLLGLDSNL-LRGSIPVAFKHMVSVSF 289 (373)
Q Consensus 214 L~l~~n~l~~~~~-~~~~~l~~~~~L~~L~ls~n~--l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~ 289 (373)
|+++.|.+..... ..+...+ ++|+.|+++++. +...-...+...++++..||+++|. ++......+.+++.|++
T Consensus 265 LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~ 342 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH 342 (419)
T ss_pred cCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence 8877776653321 1122221 678888888864 2222233455567779999998865 45445556778888999
Q ss_pred EEccCCcCccccccc---ccCCCCCCeEeCcCC
Q 040379 290 LGLASNEFEGGVPDF---FGNMCSLTMLNISDN 319 (373)
Q Consensus 290 L~L~~n~l~~~~~~~---l~~l~~L~~L~L~~n 319 (373)
|.++.|..- +|.. +...|+|.+|++-++
T Consensus 343 lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 343 LSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 999988643 4443 467789999998775
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.83 E-value=1.9e-09 Score=108.49 Aligned_cols=184 Identities=24% Similarity=0.223 Sum_probs=120.7
Q ss_pred CCCCCCEEeCCCCC--CCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCC
Q 040379 107 QLHRLTYLDLSLNN--FSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSS 184 (373)
Q Consensus 107 ~l~~L~~L~l~~n~--l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~ 184 (373)
..++|++|-+.+|. +... ..++|..++.|+.||+++|.-.+.+|..++++-+|++|+++++.+ ...|..+.++..
T Consensus 543 ~~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I--~~LP~~l~~Lk~ 619 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI--SHLPSGLGNLKK 619 (889)
T ss_pred CCCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc--cccchHHHHHHh
Confidence 34578888888885 4432 455688899999999999877779999999999999999999998 466778999999
Q ss_pred CCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhH---HHhccc
Q 040379 185 LTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPW---LFNASS 261 (373)
Q Consensus 185 L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~---~~~~~~ 261 (373)
|.+|++..+..... ++.....+++|++|.+....... ....+..+..+.+|+.+....... .+... ......
T Consensus 620 L~~Lnl~~~~~l~~--~~~i~~~L~~Lr~L~l~~s~~~~-~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~ 694 (889)
T KOG4658|consen 620 LIYLNLEVTGRLES--IPGILLELQSLRVLRLPRSALSN-DKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRS 694 (889)
T ss_pred hheecccccccccc--ccchhhhcccccEEEeecccccc-chhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHH
Confidence 99999998765442 34666679999999987664221 112233333336666666644332 01111 111111
Q ss_pred cCcEEEccCccccccccccccCCCCCCEEEccCCcCcc
Q 040379 262 NLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEG 299 (373)
Q Consensus 262 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 299 (373)
..+.+.+.++... ..+..+..+.+|+.|.+.++.+..
T Consensus 695 ~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 695 LLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred HhHhhhhcccccc-eeecccccccCcceEEEEcCCCch
Confidence 1223333223222 344556778888888888887753
No 46
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.62 E-value=1.1e-09 Score=97.45 Aligned_cols=286 Identities=16% Similarity=0.098 Sum_probs=160.8
Q ss_pred CcEEEEEcCCCCCCCCCcce-ecCccccCCCCCCEEeCCCCC-CCCCCCccccCCCCCCCEEeCcCC-ccccCccc-ccC
Q 040379 80 GHVIKLEIQPIDFDSFPLRG-TISPALLQLHRLTYLDLSLNN-FSGSPIPEFIGSLTKLSYLDLSFA-EFEGPIPS-HLG 155 (373)
Q Consensus 80 ~~v~~l~l~~~~l~~~~l~~-~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~l~~L~~L~L~~n-~l~~~~p~-~l~ 155 (373)
++++++++.+.. .... .+-.....++++++|.+.++. +++...-..-..+++|++|++..| .++...-. -..
T Consensus 138 g~lk~LSlrG~r----~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~ 213 (483)
T KOG4341|consen 138 GFLKELSLRGCR----AVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE 213 (483)
T ss_pred cccccccccccc----cCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence 456666666641 1111 111223468888888888874 444323333345788999998874 44433223 234
Q ss_pred CCCCCCEEEccCCCCC-CCCCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCC-CCCCcccccCCC
Q 040379 156 NLSALQHLDLSLNHLF-SAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHL-PPIVPLSLSNLN 233 (373)
Q Consensus 156 ~l~~L~~L~L~~n~~~-~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~ 233 (373)
.+++|++|+++.+.-. +.+.......+..++.+.+.+|.-.+...+...-+.++.+..+++.+|.. +...-..+. .
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~--~ 291 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIA--C 291 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHh--h
Confidence 7889999999888642 22233355667777777777664433333334445556667777666532 221111111 1
Q ss_pred CCCccCEEECCCCc-CCCCchhHHHhccccCcEEEccCcc-ccccccccc-cCCCCCCEEEccCCcCcc--cccccccCC
Q 040379 234 YSTSLQFLELSENN-LTNSIYPWLFNASSNLVLLGLDSNL-LRGSIPVAF-KHMVSVSFLGLASNEFEG--GVPDFFGNM 308 (373)
Q Consensus 234 ~~~~L~~L~ls~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l-~~l~~L~~L~L~~n~l~~--~~~~~l~~l 308 (373)
.+..|+.++.+++. +++.....+.+...+|+.+.++.++ ++..-...+ .+.+.|+.+++.++.... .+...-.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 23677888887764 3433444666677778888888776 332211222 456778888887775432 233333467
Q ss_pred CCCCeEeCcCCcCc-ccCchhhhc-cCCCCccCEEECcCCcC-cccCchhhhCCCCCCEEeCcCCC
Q 040379 309 CSLTMLNISDNKLR-GHFPELIQN-LSRFSSLKELYLENNRL-NGFTNNSIGQMSKLRTLSLNGNS 371 (373)
Q Consensus 309 ~~L~~L~L~~n~l~-~~~p~~~~~-l~~~~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~ 371 (373)
+.|+.+.+++|... +.--..+.. -.....|+.+.|++++. ++..-..+..+++|+.+++.+|+
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 78888888877543 220011111 01234677777777764 34444556677777777776654
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.61 E-value=6.6e-09 Score=87.52 Aligned_cols=167 Identities=19% Similarity=0.250 Sum_probs=76.6
Q ss_pred cEEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCC---C-------CccccCCCCCCCEEeCcCCccccCc
Q 040379 81 HVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGS---P-------IPEFIGSLTKLSYLDLSFAEFEGPI 150 (373)
Q Consensus 81 ~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~---~-------~~~~l~~l~~L~~L~L~~n~l~~~~ 150 (373)
.++.+++++|.+..-. ...+...+++-++|+..+++.-. +|. . +...+-+|++|+..+||.|.|....
T Consensus 31 ~~~evdLSGNtigtEA-~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 31 ELVEVDLSGNTIGTEA-MEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred ceeEEeccCCcccHHH-HHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 4556666665221110 01222334455666666665432 211 0 1223445666666666666665444
Q ss_pred cccc----CCCCCCCEEEccCCCCCCCCCCc------------ccCCCCCCCEEEccCccCCCCcc--hhhhhCCCCCCc
Q 040379 151 PSHL----GNLSALQHLDLSLNHLFSAGNLD------------WLSHLSSLTYLDLGSNNLSRSTD--WLQVVGNLPLLT 212 (373)
Q Consensus 151 p~~l----~~l~~L~~L~L~~n~~~~~~~~~------------~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~~l~~L~ 212 (373)
|+.+ +.-+.|++|.+++|.+.....-. -.++-|.|+++....|++...+. +...+..-..|+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 4432 34556666666666652211100 12334556666666665543211 122233334566
Q ss_pred EEEccCCCCCCC--CcccccCCCCCCccCEEECCCCcCC
Q 040379 213 TLYLYRCHLPPI--VPLSLSNLNYSTSLQFLELSENNLT 249 (373)
Q Consensus 213 ~L~l~~n~l~~~--~~~~~~~l~~~~~L~~L~ls~n~l~ 249 (373)
++.+.+|.+... ..-.+-.+..+.+|+.||+..|.++
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 666666554321 1111222333355566666665554
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=9.9e-09 Score=87.56 Aligned_cols=185 Identities=23% Similarity=0.188 Sum_probs=76.1
Q ss_pred CCCCCEEeCcCCcccc--CcccccCCCCCCCEEEccCCCCCCCCCCccc-CCCCCCCEEEccCccCCCCcchhhhhCCCC
Q 040379 133 LTKLSYLDLSFAEFEG--PIPSHLGNLSALQHLDLSLNHLFSAGNLDWL-SHLSSLTYLDLGSNNLSRSTDWLQVVGNLP 209 (373)
Q Consensus 133 l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~ 209 (373)
...++.+||.+|.++. .+...+.++|.|++|+++.|++ ...+..+ ....+|++|-+.+..+... ..-..+..+|
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L--~s~I~~lp~p~~nl~~lVLNgT~L~w~-~~~s~l~~lP 146 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSL--SSDIKSLPLPLKNLRVLVLNGTGLSWT-QSTSSLDDLP 146 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcC--CCccccCcccccceEEEEEcCCCCChh-hhhhhhhcch
Confidence 3445555555555441 2222334555555555555555 2222222 2344555555555444321 1223344455
Q ss_pred CCcEEEccCCCCCCCC--cccccCCCCCCccCEEECCCCcCCC-CchhHHHhccccCcEEEccCcccccc-ccccccCCC
Q 040379 210 LLTTLYLYRCHLPPIV--PLSLSNLNYSTSLQFLELSENNLTN-SIYPWLFNASSNLVLLGLDSNLLRGS-IPVAFKHMV 285 (373)
Q Consensus 210 ~L~~L~l~~n~l~~~~--~~~~~~l~~~~~L~~L~ls~n~l~~-~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~l~ 285 (373)
.+++|+++.|.+.... ....... .+.++++.+..|...- .--..+....+++..+-+..|.+... ..+....++
T Consensus 147 ~vtelHmS~N~~rq~n~Dd~c~e~~--s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p 224 (418)
T KOG2982|consen 147 KVTELHMSDNSLRQLNLDDNCIEDW--STEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFP 224 (418)
T ss_pred hhhhhhhccchhhhhcccccccccc--chhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCC
Confidence 5555555555321110 0111111 0334444433332110 00001122233455555555544321 122233444
Q ss_pred CCCEEEccCCcCccc-ccccccCCCCCCeEeCcCCcCc
Q 040379 286 SVSFLGLASNEFEGG-VPDFFGNMCSLTMLNISDNKLR 322 (373)
Q Consensus 286 ~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~ 322 (373)
.+..|+|+.|++... -.+.+.+++.|..|.++++.+.
T Consensus 225 ~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 225 SLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred cchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 555566666665531 1234555666666666666554
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.59 E-value=1.7e-09 Score=102.30 Aligned_cols=127 Identities=28% Similarity=0.305 Sum_probs=83.2
Q ss_pred CccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEe
Q 040379 236 TSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLN 315 (373)
Q Consensus 236 ~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 315 (373)
..|...++++|.+. .+ +.-.+.++.++.|+|++|+++.. . .+..+++|+.|||+.|.+. .+|..-..-.+|+.|.
T Consensus 164 n~L~~a~fsyN~L~-~m-D~SLqll~ale~LnLshNk~~~v-~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~ 238 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LM-DESLQLLPALESLNLSHNKFTKV-D-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLN 238 (1096)
T ss_pred hhHhhhhcchhhHH-hH-HHHHHHHHHhhhhccchhhhhhh-H-HHHhcccccccccccchhc-cccccchhhhhheeee
Confidence 45677777788775 22 33344555688888888888732 2 6777888888888888887 4443322223488888
Q ss_pred CcCCcCcccCchhhhccCCCCccCEEECcCCcCcccC-chhhhCCCCCCEEeCcCCCC
Q 040379 316 ISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFT-NNSIGQMSKLRTLSLNGNSL 372 (373)
Q Consensus 316 L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l 372 (373)
+++|.++.. ..+.++ ++|+.||+++|-+.+-- -.-+..+..|++|+|.||++
T Consensus 239 lrnN~l~tL--~gie~L---ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 239 LRNNALTTL--RGIENL---KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ecccHHHhh--hhHHhh---hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 888877632 223334 48888888888776532 11245567788888888875
No 50
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.57 E-value=1.1e-07 Score=58.05 Aligned_cols=41 Identities=56% Similarity=1.114 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhcCC-CCCCCCCCCCCCCCCCCCCcccceEec
Q 040379 35 DEEREALLTFKESLV-DESGVLSSWGPEDEKRDCCKWTGVGCS 76 (373)
Q Consensus 35 ~~~~~~l~~~~~~~~-~~~~~~~~w~~~~~~~~~c~w~~v~c~ 76 (373)
++|+++|++||+++. +|.+.+.+|.... ..++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~-~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSS-DSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT---S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcC-CCCCeeeccEEeC
Confidence 579999999999998 4668899998511 2799999999995
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.53 E-value=4.2e-08 Score=82.74 Aligned_cols=94 Identities=27% Similarity=0.231 Sum_probs=57.9
Q ss_pred cccCCCCCCEEeCCCCCCCCC---CCccccCCCCCCCEEeCcCCcc---ccCccc-------ccCCCCCCCEEEccCCCC
Q 040379 104 ALLQLHRLTYLDLSLNNFSGS---PIPEFIGSLTKLSYLDLSFAEF---EGPIPS-------HLGNLSALQHLDLSLNHL 170 (373)
Q Consensus 104 ~l~~l~~L~~L~l~~n~l~~~---~~~~~l~~l~~L~~L~L~~n~l---~~~~p~-------~l~~l~~L~~L~L~~n~~ 170 (373)
.+..+..++.+++|+|.|... .+...+.+-.+|+..+++.-.. ...+|. .+-+||+|+..+||.|.+
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 344578888999999988653 1223344456777777765321 122332 345778888888888887
Q ss_pred CCCCCCc---ccCCCCCCCEEEccCccCCC
Q 040379 171 FSAGNLD---WLSHLSSLTYLDLGSNNLSR 197 (373)
Q Consensus 171 ~~~~~~~---~~~~l~~L~~L~l~~n~~~~ 197 (373)
....+.+ .+++-..|++|.+.+|.+..
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp 134 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGP 134 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCc
Confidence 3332222 45666777777777776543
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.41 E-value=3.8e-07 Score=73.80 Aligned_cols=125 Identities=20% Similarity=0.184 Sum_probs=83.3
Q ss_pred CEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcC
Q 040379 239 QFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISD 318 (373)
Q Consensus 239 ~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 318 (373)
+++++.+.++. ....+.....+...+|+++|.+.. -..|..++.|.+|.+++|.++..-|..-..+++|..|.+.+
T Consensus 22 ~e~~LR~lkip--~ienlg~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 22 RELDLRGLKIP--VIENLGATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred ccccccccccc--chhhccccccccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 34445444432 112233344456777888887752 22456678888888888888876666666678888888888
Q ss_pred CcCcccCchhhhccCCCCccCEEECcCCcCcccC---chhhhCCCCCCEEeCcC
Q 040379 319 NKLRGHFPELIQNLSRFSSLKELYLENNRLNGFT---NNSIGQMSKLRTLSLNG 369 (373)
Q Consensus 319 n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~l~~ 369 (373)
|.|... ..+..+..||+|++|.+-+|+.+... -..+..+|+|+.||++.
T Consensus 98 Nsi~~l--~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 98 NSIQEL--GDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cchhhh--hhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 887633 33455667788888888888876543 23456788888888764
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.41 E-value=1.3e-08 Score=76.99 Aligned_cols=136 Identities=21% Similarity=0.206 Sum_probs=82.3
Q ss_pred CcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEE
Q 040379 211 LTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFL 290 (373)
Q Consensus 211 L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 290 (373)
+..+++++|.+-. ++.....+.....|+..++++|.+. .+|+.+....+.++.|++++|+++ .+|..+..++.|+.|
T Consensus 29 ~h~ldLssc~lm~-i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLMY-IADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhhH-HHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 4445555554431 2222222222256677777777776 566666666555777888888877 677777788888888
Q ss_pred EccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCcccCch
Q 040379 291 GLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNN 354 (373)
Q Consensus 291 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~ 354 (373)
+++.|.+. ..|..+..+.++-.|+..+|.+. .+|..+. .+. .....++.++.+.+.-+.
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~-~s~--~~al~~lgnepl~~~~~~ 164 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLF-YSS--LPALIKLGNEPLGDETKK 164 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHh-ccc--cHHHHHhcCCcccccCcc
Confidence 88888877 45666666777777777777766 4444322 122 222334455666655543
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.38 E-value=8.8e-09 Score=97.67 Aligned_cols=127 Identities=31% Similarity=0.288 Sum_probs=57.8
Q ss_pred CCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEE
Q 040379 135 KLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTL 214 (373)
Q Consensus 135 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L 214 (373)
.|...+.++|.+. .+..++.-++.|+.|||++|++... ..+..|++|++||++.|.+..++.+.. ..+. |+.|
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~~vp~l~~--~gc~-L~~L 237 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCLRHVPQLSM--VGCK-LQLL 237 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh---HHHHhcccccccccccchhccccccch--hhhh-heee
Confidence 3445555555554 3444455555555555555555222 244555555555555555554332111 1111 5555
Q ss_pred EccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCccc
Q 040379 215 YLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLL 273 (373)
Q Consensus 215 ~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l 273 (373)
.+++|.++.. ..+.++ .+|+.||+++|-+.+.---.....+..|+.|.|.+|.+
T Consensus 238 ~lrnN~l~tL--~gie~L---ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 238 NLRNNALTTL--RGIENL---KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred eecccHHHhh--hhHHhh---hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 5555544321 122233 55555555555544321111111222255555555544
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.24 E-value=7.1e-08 Score=73.06 Aligned_cols=137 Identities=17% Similarity=0.150 Sum_probs=79.1
Q ss_pred CCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccC
Q 040379 184 SLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNL 263 (373)
Q Consensus 184 ~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L 263 (373)
.+..++++.|.+..+.+.+..+.....|...++++|.+....+.....+ +.++.|++++|.++ .+|.++..... |
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf---~t~t~lNl~~neis-dvPeE~Aam~a-L 102 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKF---PTATTLNLANNEIS-DVPEELAAMPA-L 102 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhcc---chhhhhhcchhhhh-hchHHHhhhHH-h
Confidence 3445555555554433344455555566666677776665333332333 56777777777777 67777554444 7
Q ss_pred cEEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCch
Q 040379 264 VLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPE 327 (373)
Q Consensus 264 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~ 327 (373)
+.|+++.|.+. ..|..+..+.++-.|+..+|.... ++-.+-.....-..++.++.+.+.-+.
T Consensus 103 r~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~e-id~dl~~s~~~al~~lgnepl~~~~~~ 164 (177)
T KOG4579|consen 103 RSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAE-IDVDLFYSSLPALIKLGNEPLGDETKK 164 (177)
T ss_pred hhcccccCccc-cchHHHHHHHhHHHhcCCCCcccc-CcHHHhccccHHHHHhcCCcccccCcc
Confidence 88888887776 456666667777778877777663 332222222333334455566554443
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.16 E-value=1.9e-06 Score=85.00 Aligned_cols=140 Identities=19% Similarity=0.157 Sum_probs=78.4
Q ss_pred CCCcEEEccCCCCCC-CCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCC
Q 040379 209 PLLTTLYLYRCHLPP-IVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSV 287 (373)
Q Consensus 209 ~~L~~L~l~~n~l~~-~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L 287 (373)
.+|++|++++...-. .-|..++.+ +|+|+.|.+++-.+...-...++...++|..||++++.++.. ..++.+++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~--LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTM--LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNL 197 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhh--CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccH
Confidence 567777776644321 112222222 377777777776655443445555566677777777776632 456677777
Q ss_pred CEEEccCCcCcc-cccccccCCCCCCeEeCcCCcCcccC--c-hhhhccCCCCccCEEECcCCcCcccC
Q 040379 288 SFLGLASNEFEG-GVPDFFGNMCSLTMLNISDNKLRGHF--P-ELIQNLSRFSSLKELYLENNRLNGFT 352 (373)
Q Consensus 288 ~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~--p-~~~~~l~~~~~L~~L~L~~n~l~~~~ 352 (373)
+.|.+.+=.+.. .....+.++++|+.||+|..+..... . .-+..-..+|+|+.||.+++.+.+..
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 777776666553 22233456777777777765443211 1 11111224557777777777666554
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.10 E-value=8.1e-07 Score=87.60 Aligned_cols=155 Identities=24% Similarity=0.228 Sum_probs=92.7
Q ss_pred CCCCCEEeCCCCCCCCCCCccccC-CCCCCCEEeCcCCcccc-CcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCC
Q 040379 108 LHRLTYLDLSLNNFSGSPIPEFIG-SLTKLSYLDLSFAEFEG-PIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSL 185 (373)
Q Consensus 108 l~~L~~L~l~~n~l~~~~~~~~l~-~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L 185 (373)
-.+|++|++++...-....|..++ .+|.|+.|.+++-.+.. .+-....++|+|..||+|++++.. ...++++++|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n---l~GIS~LknL 197 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN---LSGISRLKNL 197 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC---cHHHhccccH
Confidence 356777777775432222343343 36788888877765532 222333567778888888877732 2556777777
Q ss_pred CEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCC--c----ccccCCCCCCccCEEECCCCcCCCCchhHHHhc
Q 040379 186 TYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIV--P----LSLSNLNYSTSLQFLELSENNLTNSIYPWLFNA 259 (373)
Q Consensus 186 ~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~----~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~ 259 (373)
+.|.+.+=.+.... -...+.++++|+.||++........ . +.-..+ |+|+.||.|++.+.+.+...+...
T Consensus 198 q~L~mrnLe~e~~~-~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~L---peLrfLDcSgTdi~~~~le~ll~s 273 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQ-DLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVL---PELRFLDCSGTDINEEILEELLNS 273 (699)
T ss_pred HHHhccCCCCCchh-hHHHHhcccCCCeeeccccccccchHHHHHHHHhcccC---ccccEEecCCcchhHHHHHHHHHh
Confidence 77777766655432 2345666778888887766543322 1 111223 888888888888876666655554
Q ss_pred cccCcEEEcc
Q 040379 260 SSNLVLLGLD 269 (373)
Q Consensus 260 ~~~L~~L~l~ 269 (373)
-++|+.+.+-
T Consensus 274 H~~L~~i~~~ 283 (699)
T KOG3665|consen 274 HPNLQQIAAL 283 (699)
T ss_pred CccHhhhhhh
Confidence 4545555433
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.08 E-value=3.7e-06 Score=51.46 Aligned_cols=39 Identities=28% Similarity=0.526 Sum_probs=22.7
Q ss_pred CCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCccc
Q 040379 309 CSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGF 351 (373)
Q Consensus 309 ~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~ 351 (373)
++|++|++++|+|+ .+|..+.. +++|+.|++++|+++..
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~---l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSN---LPNLETLNLSNNPISDI 39 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTT---CTTSSEEEETSSCCSBE
T ss_pred CcceEEEccCCCCc-ccCchHhC---CCCCCEEEecCCCCCCC
Confidence 35677777777776 34443433 33777777777777643
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.08 E-value=5.5e-06 Score=67.22 Aligned_cols=106 Identities=27% Similarity=0.311 Sum_probs=67.4
Q ss_pred CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCCEE
Q 040379 109 HRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYL 188 (373)
Q Consensus 109 ~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 188 (373)
.....+|+++|.+.. .+.+..++.|.+|.+.+|+++..-|.--..+++|+.|.+.+|.+...+....+..|++|++|
T Consensus 42 d~~d~iDLtdNdl~~---l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK---LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhh---cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 455677888887753 23456677888888888888744444334567788888888887666666667777778887
Q ss_pred EccCccCCCCcch-hhhhCCCCCCcEEEcc
Q 040379 189 DLGSNNLSRSTDW-LQVVGNLPLLTTLYLY 217 (373)
Q Consensus 189 ~l~~n~~~~~~~~-~~~~~~l~~L~~L~l~ 217 (373)
.+-+|.+...... ...+..+|+|+.||+.
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehh
Confidence 7777766543211 1223344444444443
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.05 E-value=5.8e-06 Score=50.58 Aligned_cols=37 Identities=27% Similarity=0.448 Sum_probs=23.7
Q ss_pred CCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCc
Q 040379 285 VSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLR 322 (373)
Q Consensus 285 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 322 (373)
++|++|++++|+++ .+|..++++++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35677777777776 35555677777777777777766
No 61
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.02 E-value=2.6e-07 Score=82.53 Aligned_cols=256 Identities=17% Similarity=0.172 Sum_probs=160.7
Q ss_pred CCCCCCEEeCCCC-CCCCCCCccccCCCCCCCEEeCcCCc-cccC-cccccCCCCCCCEEEccCCCCCCCCCCc-ccCCC
Q 040379 107 QLHRLTYLDLSLN-NFSGSPIPEFIGSLTKLSYLDLSFAE-FEGP-IPSHLGNLSALQHLDLSLNHLFSAGNLD-WLSHL 182 (373)
Q Consensus 107 ~l~~L~~L~l~~n-~l~~~~~~~~l~~l~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~L~L~~n~~~~~~~~~-~~~~l 182 (373)
.+++|++|++..| .++...+......+++|++|+++.+. +++. +-....++..++.+.+.+|.-....... .-+.+
T Consensus 188 ~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~ 267 (483)
T KOG4341|consen 188 YCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYC 267 (483)
T ss_pred hcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccC
Confidence 5899999999985 45544333345678999999999874 4431 2223456777777777765431111111 12345
Q ss_pred CCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCc-ccccCCCCCCccCEEECCCCc-CCCCchhHHHhcc
Q 040379 183 SSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVP-LSLSNLNYSTSLQFLELSENN-LTNSIYPWLFNAS 260 (373)
Q Consensus 183 ~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~~~~L~~L~ls~n~-l~~~~~~~~~~~~ 260 (373)
..+..+++..+......++...-..+..|+.+..+++...+..+ .+++ ..+.+|+.+.++.++ +++.....+....
T Consensus 268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg--~~~~~L~~l~l~~c~~fsd~~ft~l~rn~ 345 (483)
T KOG4341|consen 268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALG--QHCHNLQVLELSGCQQFSDRGFTMLGRNC 345 (483)
T ss_pred hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHh--cCCCceEEEeccccchhhhhhhhhhhcCC
Confidence 55666666666443333445556677888999888775422211 2222 133789999999886 5544445566666
Q ss_pred ccCcEEEccCcccc--ccccccccCCCCCCEEEccCCcCcccc-----cccccCCCCCCeEeCcCCcCcccCchhhhccC
Q 040379 261 SNLVLLGLDSNLLR--GSIPVAFKHMVSVSFLGLASNEFEGGV-----PDFFGNMCSLTMLNISDNKLRGHFPELIQNLS 333 (373)
Q Consensus 261 ~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 333 (373)
..|+.+++..+... +++...-.+++.|+.+.++.+...... ...-..+..|+.+.|+++..+.. ..+..+.
T Consensus 346 ~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d--~~Le~l~ 423 (483)
T KOG4341|consen 346 PHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD--ATLEHLS 423 (483)
T ss_pred hhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH--HHHHHHh
Confidence 77999998887643 223344467889999999988654221 12224567899999999977644 5677788
Q ss_pred CCCccCEEECcCCc-CcccC-chhhhCCCCCCEEe
Q 040379 334 RFSSLKELYLENNR-LNGFT-NNSIGQMSKLRTLS 366 (373)
Q Consensus 334 ~~~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~ 366 (373)
.|++|+.+++-++. ++... ...-..+|++++.-
T Consensus 424 ~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 424 ICRNLERIELIDCQDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred hCcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence 88899999998885 33332 22234567766543
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.91 E-value=3.7e-05 Score=70.44 Aligned_cols=138 Identities=18% Similarity=0.140 Sum_probs=82.0
Q ss_pred cCCCCCCCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCC-CCCCCCcccccCC
Q 040379 154 LGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRC-HLPPIVPLSLSNL 232 (373)
Q Consensus 154 l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l 232 (373)
+..+.+++.|++++|.+...+ .-..+|++|.++++.--. .++..+ .++|+.|++++| .+. .+|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP-----~LP~sLtsL~Lsnc~nLt--sLP~~L--P~nLe~L~Ls~Cs~L~-sLP------ 111 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP-----VLPNELTEITIENCNNLT--TLPGSI--PEGLEKLTVCHCPEIS-GLP------ 111 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC-----CCCCCCcEEEccCCCCcc--cCCchh--hhhhhheEccCccccc-ccc------
Confidence 445788999999999774332 122469999998754322 233322 257899999888 333 233
Q ss_pred CCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCcccc-c-cccccccCCCCCCEEEccCCcCcccccccccCCCC
Q 040379 233 NYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLR-G-SIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCS 310 (373)
Q Consensus 233 ~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~-~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 310 (373)
.+|+.|+++.+... . +...+++|+.|.+.+++.. . ..|..+ .++|++|++++|... ..|..+. .+
T Consensus 112 ---~sLe~L~L~~n~~~-~----L~~LPssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~S 178 (426)
T PRK15386 112 ---ESVRSLEIKGSATD-S----IKNVPNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ES 178 (426)
T ss_pred ---cccceEEeCCCCCc-c----cccCcchHhheecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--cc
Confidence 56777787765543 1 1223344777777543211 0 112111 157889999888765 3444333 58
Q ss_pred CCeEeCcCCc
Q 040379 311 LTMLNISDNK 320 (373)
Q Consensus 311 L~~L~L~~n~ 320 (373)
|+.|+++.+.
T Consensus 179 Lk~L~ls~n~ 188 (426)
T PRK15386 179 LQSITLHIEQ 188 (426)
T ss_pred CcEEEecccc
Confidence 8888887763
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.91 E-value=6.2e-06 Score=69.64 Aligned_cols=112 Identities=24% Similarity=0.188 Sum_probs=71.8
Q ss_pred cccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCC--ccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCC
Q 040379 104 ALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFA--EFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSH 181 (373)
Q Consensus 104 ~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~ 181 (373)
..-.+..|+.|.+.+..++.. ..+-.+++|++|.++.| ++++.++.....+|+|+++++++|++........+..
T Consensus 38 l~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~ 114 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKE 114 (260)
T ss_pred ccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhh
Confidence 334456666666666665532 23455788888888888 5665555555667888888888888855555556677
Q ss_pred CCCCCEEEccCccCCCCcch-hhhhCCCCCCcEEEccC
Q 040379 182 LSSLTYLDLGSNNLSRSTDW-LQVVGNLPLLTTLYLYR 218 (373)
Q Consensus 182 l~~L~~L~l~~n~~~~~~~~-~~~~~~l~~L~~L~l~~ 218 (373)
+.+|..|++.+|..+..... -..+.-+++|++|+-..
T Consensus 115 l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 77788888887776554221 13344556666665433
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.90 E-value=4.6e-05 Score=69.80 Aligned_cols=138 Identities=14% Similarity=0.121 Sum_probs=77.9
Q ss_pred cccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCC-CCCCCCCCcccCCC
Q 040379 104 ALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLN-HLFSAGNLDWLSHL 182 (373)
Q Consensus 104 ~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~~~~~~~~~~~~~l 182 (373)
.+..++++++|++++|.++ .+|. + ..+|++|.++++.--..+|..+ .++|++|++++| .+. .. .
T Consensus 47 r~~~~~~l~~L~Is~c~L~--sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~--sL------P 111 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIE--SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS--GL------P 111 (426)
T ss_pred HHHHhcCCCEEEeCCCCCc--ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc--cc------c
Confidence 3455688889999988777 3552 1 3468999988754333666544 357888888887 441 11 2
Q ss_pred CCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCC--CCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhcc
Q 040379 183 SSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLP--PIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNAS 260 (373)
Q Consensus 183 ~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~ 260 (373)
..|+.|++..+.......+| ++|+.|.+.+++.. ...|. .+ .++|++|++++|... ..|.. .+
T Consensus 112 ~sLe~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~---~L--PsSLk~L~Is~c~~i-~LP~~---LP 176 (426)
T PRK15386 112 ESVRSLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDN---LI--SPSLKTLSLTGCSNI-ILPEK---LP 176 (426)
T ss_pred cccceEEeCCCCCcccccCc------chHhheecccccccccccccc---cc--CCcccEEEecCCCcc-cCccc---cc
Confidence 35777777665544322222 24566666432211 00110 11 156777777777644 23322 22
Q ss_pred ccCcEEEccCc
Q 040379 261 SNLVLLGLDSN 271 (373)
Q Consensus 261 ~~L~~L~l~~n 271 (373)
.+|+.|+++.+
T Consensus 177 ~SLk~L~ls~n 187 (426)
T PRK15386 177 ESLQSITLHIE 187 (426)
T ss_pred ccCcEEEeccc
Confidence 34777777665
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.67 E-value=1.4e-05 Score=67.54 Aligned_cols=101 Identities=24% Similarity=0.301 Sum_probs=59.5
Q ss_pred CcEEEccCccccccccccccCCCCCCEEEccCC--cCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCE
Q 040379 263 LVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASN--EFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKE 340 (373)
Q Consensus 263 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n--~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~ 340 (373)
|+.+.+.+..++.. ..+..+++|+.|.++.| ...+.++-....+|+|+++++++|++.. +..+..++.+++|..
T Consensus 45 le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 45 LELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKS 120 (260)
T ss_pred hhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhh
Confidence 55555555554421 12345667777777777 4454444444556777888888777763 344444555557777
Q ss_pred EECcCCcCcccCc---hhhhCCCCCCEEeC
Q 040379 341 LYLENNRLNGFTN---NSIGQMSKLRTLSL 367 (373)
Q Consensus 341 L~L~~n~l~~~~~---~~~~~l~~L~~L~l 367 (373)
|++.+|..+.... ..+.-+++|++||-
T Consensus 121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhcccCCccccccHHHHHHHHhhhhccccc
Confidence 7777776655331 23344566666653
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=5.3e-06 Score=70.61 Aligned_cols=100 Identities=19% Similarity=0.233 Sum_probs=73.1
Q ss_pred ccCcEEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCE
Q 040379 261 SNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKE 340 (373)
Q Consensus 261 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~ 340 (373)
.+.++|++.+|.+++. .....++.|+.|.|+-|+++. ...+..|++|++|+|..|.|.+. +.+.-+.++|+|+.
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sl--dEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESL--DELEYLKNLPSLRT 92 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccH--HHHHHHhcCchhhh
Confidence 3467777777777642 123567888888888888874 33467888899999998888754 55667778888999
Q ss_pred EECcCCcCcccCch-----hhhCCCCCCEEe
Q 040379 341 LYLENNRLNGFTNN-----SIGQMSKLRTLS 366 (373)
Q Consensus 341 L~L~~n~l~~~~~~-----~~~~l~~L~~L~ 366 (373)
|.|..|+..|..+. .+..+|+|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99998888776543 345678888776
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=3.2e-06 Score=71.88 Aligned_cols=103 Identities=24% Similarity=0.238 Sum_probs=75.6
Q ss_pred CCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCCE
Q 040379 108 LHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTY 187 (373)
Q Consensus 108 l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 187 (373)
+.+.+.|++.++.++++ ....+|+.|+.|.|+-|+++.. ..+..|++|++|.|..|.|.+......+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 55677888888888765 2456788899999999988743 336788889999999988855555567888889999
Q ss_pred EEccCccCCCCcc---hhhhhCCCCCCcEEE
Q 040379 188 LDLGSNNLSRSTD---WLQVVGNLPLLTTLY 215 (373)
Q Consensus 188 L~l~~n~~~~~~~---~~~~~~~l~~L~~L~ 215 (373)
|.|..|...+... -...+..+|+|+.|+
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9888887654311 224566778888776
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.30 E-value=3.4e-05 Score=74.10 Aligned_cols=115 Identities=24% Similarity=0.192 Sum_probs=75.9
Q ss_pred CCCCCCEEeCCCC-CCCCCCCccccCCCCCCCEEeCcCC-ccccCcc----cccCCCCCCCEEEccCCC-CCCCCCCccc
Q 040379 107 QLHRLTYLDLSLN-NFSGSPIPEFIGSLTKLSYLDLSFA-EFEGPIP----SHLGNLSALQHLDLSLNH-LFSAGNLDWL 179 (373)
Q Consensus 107 ~l~~L~~L~l~~n-~l~~~~~~~~l~~l~~L~~L~L~~n-~l~~~~p----~~l~~l~~L~~L~L~~n~-~~~~~~~~~~ 179 (373)
.++.|+.|.+.++ .+....+-.....+++|+.|+++++ ......+ .....+++|+.++++++. +++.+.....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 4788888888877 3443223345567889999999873 2221222 233467889999999888 4333222223
Q ss_pred CCCCCCCEEEccCcc-CCCCcchhhhhCCCCCCcEEEccCCCCC
Q 040379 180 SHLSSLTYLDLGSNN-LSRSTDWLQVVGNLPLLTTLYLYRCHLP 222 (373)
Q Consensus 180 ~~l~~L~~L~l~~n~-~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 222 (373)
..+++|++|.+.++. +++ ..+......++.|++|++++|...
T Consensus 266 ~~c~~L~~L~l~~c~~lt~-~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTD-EGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhCCCcceEccCCCCccch-hHHHHHHHhcCcccEEeeecCccc
Confidence 348899999977776 333 346667778889999999988654
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.97 E-value=0.00012 Score=70.22 Aligned_cols=181 Identities=21% Similarity=0.138 Sum_probs=83.5
Q ss_pred CCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCC-CCCCCCc-ccccCCCCCCccCEEECCCCc-CCCCchhHHHh
Q 040379 182 LSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRC-HLPPIVP-LSLSNLNYSTSLQFLELSENN-LTNSIYPWLFN 258 (373)
Q Consensus 182 l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~~~~L~~L~ls~n~-l~~~~~~~~~~ 258 (373)
++.|+.+.+.++.......+......++.|++|+++++ ......+ ........+++|+.++++++. +++.....+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45555555555433222123344555566666666542 1111111 001111223566666666665 45444444555
Q ss_pred ccccCcEEEccCcc-cccc-ccccccCCCCCCEEEccCCcCcc--cccccccCCCCCCeEe--------------CcCCc
Q 040379 259 ASSNLVLLGLDSNL-LRGS-IPVAFKHMVSVSFLGLASNEFEG--GVPDFFGNMCSLTMLN--------------ISDNK 320 (373)
Q Consensus 259 ~~~~L~~L~l~~n~-l~~~-~~~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~--------------L~~n~ 320 (373)
.+++|+.|.+.++. +++. +-.....++.|++|+++++.... .+.....++++|+.|. +.+..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~ 346 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLL 346 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhh
Confidence 45556666655555 3332 22223445566666666654421 1222223344444433 32221
Q ss_pred CcccCchhhhccCCCCccCEEECcCCcCcccC-chhhhCCCCC
Q 040379 321 LRGHFPELIQNLSRFSSLKELYLENNRLNGFT-NNSIGQMSKL 362 (373)
Q Consensus 321 l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L 362 (373)
-...-.........+++++.+.+.++...... ...+.+++.|
T Consensus 347 ~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 347 TLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred ccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 11100111123456778999999988854443 2445566665
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.86 E-value=0.003 Score=48.75 Aligned_cols=12 Identities=25% Similarity=0.304 Sum_probs=3.6
Q ss_pred CCCCCCCEEEcc
Q 040379 155 GNLSALQHLDLS 166 (373)
Q Consensus 155 ~~l~~L~~L~L~ 166 (373)
.++.+|+.+.+.
T Consensus 9 ~~~~~l~~i~~~ 20 (129)
T PF13306_consen 9 YNCSNLESITFP 20 (129)
T ss_dssp TT-TT--EEEET
T ss_pred hCCCCCCEEEEC
Confidence 334444444443
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.69 E-value=1.9e-05 Score=74.74 Aligned_cols=193 Identities=28% Similarity=0.244 Sum_probs=95.9
Q ss_pred CCCCEEEccCCCCCCCCCC---cccCCCCCCCEEEccCccCCCCc--chhhhhCCC-CCCcEEEccCCCCCCCCccccc-
Q 040379 158 SALQHLDLSLNHLFSAGNL---DWLSHLSSLTYLDLGSNNLSRST--DWLQVVGNL-PLLTTLYLYRCHLPPIVPLSLS- 230 (373)
Q Consensus 158 ~~L~~L~L~~n~~~~~~~~---~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~- 230 (373)
..+..+.+.+|.+...+.. ..+...+.|+.|++++|.+.+.. .+...+... ..++.|++..|.++......+.
T Consensus 87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 3477888888888443221 14566778888888888776421 112222332 4566677766766543322111
Q ss_pred CCCCCCccCEEECCCCcCCCC----chhHHHh---ccccCcEEEccCcccccc----ccccccCCCC-CCEEEccCCcCc
Q 040379 231 NLNYSTSLQFLELSENNLTNS----IYPWLFN---ASSNLVLLGLDSNLLRGS----IPVAFKHMVS-VSFLGLASNEFE 298 (373)
Q Consensus 231 ~l~~~~~L~~L~ls~n~l~~~----~~~~~~~---~~~~L~~L~l~~n~l~~~----~~~~l~~l~~-L~~L~L~~n~l~ 298 (373)
.+.....++.++++.|.+... ++..+-. ...++++|++.+|.++.. +...+...+. +..|++..|.+.
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG 246 (478)
T ss_pred HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence 111226677777777765311 1111111 233466666666655431 1122233333 445666666655
Q ss_pred ccc----cccccCC-CCCCeEeCcCCcCcccCchhhh-ccCCCCccCEEECcCCcCcc
Q 040379 299 GGV----PDFFGNM-CSLTMLNISDNKLRGHFPELIQ-NLSRFSSLKELYLENNRLNG 350 (373)
Q Consensus 299 ~~~----~~~l~~l-~~L~~L~L~~n~l~~~~p~~~~-~l~~~~~L~~L~L~~n~l~~ 350 (373)
+.. ...+..+ +.+++++++.|.|++.-...+. .+..++.++.+.+++|.+..
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 321 1222333 4556666666666543333222 23344456666666665544
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.51 E-value=0.0079 Score=46.34 Aligned_cols=13 Identities=31% Similarity=0.565 Sum_probs=5.2
Q ss_pred ccCCCCCCeEeCc
Q 040379 305 FGNMCSLTMLNIS 317 (373)
Q Consensus 305 l~~l~~L~~L~L~ 317 (373)
|..+++|+.+++.
T Consensus 77 F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 77 FSNCTNLKNIDIP 89 (129)
T ss_dssp TTT-TTECEEEET
T ss_pred ccccccccccccC
Confidence 3334444444443
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.88 E-value=6.9e-05 Score=71.00 Aligned_cols=214 Identities=25% Similarity=0.223 Sum_probs=139.6
Q ss_pred CCCEEeCcCCccccCcc----cccCCCCCCCEEEccCCCCCCCCCCc---ccCCC-CCCCEEEccCccCCCC--cchhhh
Q 040379 135 KLSYLDLSFAEFEGPIP----SHLGNLSALQHLDLSLNHLFSAGNLD---WLSHL-SSLTYLDLGSNNLSRS--TDWLQV 204 (373)
Q Consensus 135 ~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~L~~n~~~~~~~~~---~~~~l-~~L~~L~l~~n~~~~~--~~~~~~ 204 (373)
.+..|.+.+|.+..... ..+...+.|+.|++++|.+...+... .+... ..+++|++..|.++.. ..+...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 37888999998874433 34567889999999999994222111 22332 5678888888887654 346677
Q ss_pred hCCCCCCcEEEccCCCCCCC----CcccccC-CCCCCccCEEECCCCcCCCCchhH---HHhcccc-CcEEEccCccccc
Q 040379 205 VGNLPLLTTLYLYRCHLPPI----VPLSLSN-LNYSTSLQFLELSENNLTNSIYPW---LFNASSN-LVLLGLDSNLLRG 275 (373)
Q Consensus 205 ~~~l~~L~~L~l~~n~l~~~----~~~~~~~-l~~~~~L~~L~ls~n~l~~~~~~~---~~~~~~~-L~~L~l~~n~l~~ 275 (373)
+.....+++++++.|.+... .+..+.. +....++++|.+++|.++...-.. .....+. +..+++..|.+.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 78889999999999987421 1222222 112378999999999887322211 1122222 6669999998874
Q ss_pred c----ccccccCC-CCCCEEEccCCcCccc----ccccccCCCCCCeEeCcCCcCcccCch-hhhccCCCCccCEEECcC
Q 040379 276 S----IPVAFKHM-VSVSFLGLASNEFEGG----VPDFFGNMCSLTMLNISDNKLRGHFPE-LIQNLSRFSSLKELYLEN 345 (373)
Q Consensus 276 ~----~~~~l~~l-~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~~~~L~~L~L~~ 345 (373)
. ..+.+..+ ..++.++++.|.+++. ..+.+..++.++++.+++|.+.+.... .+..+.....+..+-+.+
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~ 327 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGG 327 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccc
Confidence 3 23445555 6789999999999864 345556778999999999999864222 223333334556666665
Q ss_pred CcC
Q 040379 346 NRL 348 (373)
Q Consensus 346 n~l 348 (373)
+..
T Consensus 328 ~~~ 330 (478)
T KOG4308|consen 328 TGK 330 (478)
T ss_pred cCc
Confidence 543
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.80 E-value=0.0041 Score=31.56 Aligned_cols=21 Identities=48% Similarity=0.717 Sum_probs=13.2
Q ss_pred CCCEEeCcCCccccCcccccCC
Q 040379 135 KLSYLDLSFAEFEGPIPSHLGN 156 (373)
Q Consensus 135 ~L~~L~L~~n~l~~~~p~~l~~ 156 (373)
+|++|++++|+++ .+|..+++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4667777777666 56655543
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.33 E-value=0.0069 Score=30.69 Aligned_cols=12 Identities=42% Similarity=0.470 Sum_probs=5.8
Q ss_pred cCEEECcCCcCc
Q 040379 338 LKELYLENNRLN 349 (373)
Q Consensus 338 L~~L~L~~n~l~ 349 (373)
|++|++++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 444555555444
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.62 E-value=0.0056 Score=50.14 Aligned_cols=83 Identities=16% Similarity=0.161 Sum_probs=58.6
Q ss_pred CcEEEccCccccccccccccCCCCCCEEEccCCcC-ccccccccc-CCCCCCeEeCcCC-cCcccCchhhhccCCCCccC
Q 040379 263 LVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEF-EGGVPDFFG-NMCSLTMLNISDN-KLRGHFPELIQNLSRFSSLK 339 (373)
Q Consensus 263 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l-~~~~~~~l~-~l~~L~~L~L~~n-~l~~~~p~~~~~l~~~~~L~ 339 (373)
++.++.++..+....-+.+..++.++.|.+.+|.- .+...+-++ -.++|+.|++++| +|++. .+..+..+++|+
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~---GL~~L~~lknLr 179 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG---GLACLLKLKNLR 179 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh---HHHHHHHhhhhH
Confidence 88999999988877777788889999999988853 322222222 3478999999988 57753 344444555888
Q ss_pred EEECcCCcC
Q 040379 340 ELYLENNRL 348 (373)
Q Consensus 340 ~L~L~~n~l 348 (373)
.|.+.+-+.
T Consensus 180 ~L~l~~l~~ 188 (221)
T KOG3864|consen 180 RLHLYDLPY 188 (221)
T ss_pred HHHhcCchh
Confidence 888876543
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.26 E-value=0.0076 Score=49.38 Aligned_cols=81 Identities=14% Similarity=0.094 Sum_probs=41.4
Q ss_pred ccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccc-cccc-cCCCCCCEEEccCC-cCcccccccccCCCCCCe
Q 040379 237 SLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSI-PVAF-KHMVSVSFLGLASN-EFEGGVPDFFGNMCSLTM 313 (373)
Q Consensus 237 ~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l-~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~ 313 (373)
.++.+|-++..+..+....+... ..++.|.+.+|.--+.- -+.+ +-.++|+.|++++| .|++.....+..+++|+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l-~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDL-RSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhcc-chhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 45666666666554433333332 23666666655432210 0111 12356667777665 455555555566666666
Q ss_pred EeCcC
Q 040379 314 LNISD 318 (373)
Q Consensus 314 L~L~~ 318 (373)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 66654
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.38 E-value=0.055 Score=25.38 Aligned_cols=12 Identities=42% Similarity=0.462 Sum_probs=4.0
Q ss_pred CCCEEeCcCCcc
Q 040379 135 KLSYLDLSFAEF 146 (373)
Q Consensus 135 ~L~~L~L~~n~l 146 (373)
+|+.|++++|++
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 344444444443
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.31 E-value=0.055 Score=27.91 Aligned_cols=13 Identities=31% Similarity=0.654 Sum_probs=4.9
Q ss_pred CCCeEeCcCCcCc
Q 040379 310 SLTMLNISDNKLR 322 (373)
Q Consensus 310 ~L~~L~L~~n~l~ 322 (373)
+|++|+|++|+|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 4444444444444
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.63 E-value=0.044 Score=28.30 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=14.1
Q ss_pred CCccCEEECcCCcCcccCchhh
Q 040379 335 FSSLKELYLENNRLNGFTNNSI 356 (373)
Q Consensus 335 ~~~L~~L~L~~n~l~~~~~~~~ 356 (373)
+++|+.|+|++|.+++.....+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 3588899999998877655444
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.47 E-value=0.29 Score=25.66 Aligned_cols=21 Identities=43% Similarity=0.599 Sum_probs=12.7
Q ss_pred CccCEEECCCCcCCCCchhHHH
Q 040379 236 TSLQFLELSENNLTNSIYPWLF 257 (373)
Q Consensus 236 ~~L~~L~ls~n~l~~~~~~~~~ 257 (373)
++|+.|++++|.+. .+|...+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666666 5555443
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.47 E-value=0.29 Score=25.66 Aligned_cols=21 Identities=43% Similarity=0.599 Sum_probs=12.7
Q ss_pred CccCEEECCCCcCCCCchhHHH
Q 040379 236 TSLQFLELSENNLTNSIYPWLF 257 (373)
Q Consensus 236 ~~L~~L~ls~n~l~~~~~~~~~ 257 (373)
++|+.|++++|.+. .+|...+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666666 5555443
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.70 E-value=0.32 Score=25.52 Aligned_cols=18 Identities=39% Similarity=0.604 Sum_probs=10.1
Q ss_pred ccCEEECcCCcCcccCch
Q 040379 337 SLKELYLENNRLNGFTNN 354 (373)
Q Consensus 337 ~L~~L~L~~n~l~~~~~~ 354 (373)
+|+.|+|++|.++..++.
T Consensus 3 ~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 3 NLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCEEECCCCcCCcCCHH
Confidence 556666666666554443
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.70 E-value=0.32 Score=25.52 Aligned_cols=18 Identities=39% Similarity=0.604 Sum_probs=10.1
Q ss_pred ccCEEECcCCcCcccCch
Q 040379 337 SLKELYLENNRLNGFTNN 354 (373)
Q Consensus 337 ~L~~L~L~~n~l~~~~~~ 354 (373)
+|+.|+|++|.++..++.
T Consensus 3 ~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 3 NLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCEEECCCCcCCcCCHH
Confidence 556666666666554443
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.10 E-value=0.0091 Score=50.05 Aligned_cols=87 Identities=18% Similarity=0.166 Sum_probs=46.3
Q ss_pred cccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCC
Q 040379 104 ALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLS 183 (373)
Q Consensus 104 ~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 183 (373)
.+..+...+.||++.|.+-. +-..++.+..|..|+++.|.+. .+|..+.....+..+++..|.. ...+..+...+
T Consensus 37 ei~~~kr~tvld~~s~r~vn--~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~--~~~p~s~~k~~ 111 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVN--LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNH--SQQPKSQKKEP 111 (326)
T ss_pred hhhccceeeeehhhhhHHHh--hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccch--hhCCccccccC
Confidence 34455555666666655431 2233444555556666666555 4555555555555666555555 23333455555
Q ss_pred CCCEEEccCccC
Q 040379 184 SLTYLDLGSNNL 195 (373)
Q Consensus 184 ~L~~L~l~~n~~ 195 (373)
.++++++-+|.+
T Consensus 112 ~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 112 HPKKNEQKKTEF 123 (326)
T ss_pred CcchhhhccCcc
Confidence 666555555543
No 86
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.17 E-value=0.031 Score=46.95 Aligned_cols=82 Identities=16% Similarity=0.127 Sum_probs=47.3
Q ss_pred cCcEEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEE
Q 040379 262 NLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKEL 341 (373)
Q Consensus 262 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L 341 (373)
..+.||++.|++. .....+..++.+..|+++.|.+. ..|+.+.....+..+++..|..+ ..|..+...+ +++++
T Consensus 43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~---~~k~~ 116 (326)
T KOG0473|consen 43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEP---HPKKN 116 (326)
T ss_pred eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccC---Ccchh
Confidence 3666666666655 23333445555666666666665 45555565566666666666555 4455444444 66666
Q ss_pred ECcCCcCc
Q 040379 342 YLENNRLN 349 (373)
Q Consensus 342 ~L~~n~l~ 349 (373)
++..|.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 66666543
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=82.49 E-value=1.1 Score=42.78 Aligned_cols=70 Identities=24% Similarity=0.199 Sum_probs=39.4
Q ss_pred CCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCC
Q 040379 181 HLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNS 251 (373)
Q Consensus 181 ~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~ 251 (373)
+.+.+..+++++|++.....+.......|+|+.|+|++|+.--....++.+++. ..|++|-+.+|.+...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCccccc
Confidence 455666677777776665555555556677777777777222112223333322 3567777777766543
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=82.19 E-value=1.3 Score=23.39 Aligned_cols=12 Identities=33% Similarity=0.562 Sum_probs=5.7
Q ss_pred CCCEEeCcCCCC
Q 040379 361 KLRTLSLNGNSL 372 (373)
Q Consensus 361 ~L~~L~l~~n~l 372 (373)
+|+.|+++.|+|
T Consensus 3 ~L~~L~L~~NkI 14 (26)
T smart00365 3 NLEELDLSQNKI 14 (26)
T ss_pred ccCEEECCCCcc
Confidence 444444444444
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=79.46 E-value=1.7 Score=23.30 Aligned_cols=12 Identities=50% Similarity=0.733 Sum_probs=5.7
Q ss_pred CCCEEeCcCCCC
Q 040379 361 KLRTLSLNGNSL 372 (373)
Q Consensus 361 ~L~~L~l~~n~l 372 (373)
+|++|||++|.|
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 444455554444
No 90
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=76.54 E-value=1.8 Score=22.78 Aligned_cols=17 Identities=24% Similarity=0.450 Sum_probs=10.1
Q ss_pred CCCEEeCcCCccccCccc
Q 040379 135 KLSYLDLSFAEFEGPIPS 152 (373)
Q Consensus 135 ~L~~L~L~~n~l~~~~p~ 152 (373)
+|+.|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 5666666666665 4443
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=70.01 E-value=2.8 Score=40.11 Aligned_cols=82 Identities=23% Similarity=0.273 Sum_probs=52.9
Q ss_pred cCCCCCCEEEccCCcCcc--cccccccCCCCCCeEeCcCC--cCcccCchhhhccCCCCccCEEECcCCcCcccCc--h-
Q 040379 282 KHMVSVSFLGLASNEFEG--GVPDFFGNMCSLTMLNISDN--KLRGHFPELIQNLSRFSSLKELYLENNRLNGFTN--N- 354 (373)
Q Consensus 282 ~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n--~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~--~- 354 (373)
.+.+.+..+.|++|++.. .+...-...|+|+.|+|++| .+... .++..++.. .|++|-+.+|++..... .
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l-~Leel~l~GNPlc~tf~~~s~ 291 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGL-PLEELVLEGNPLCTTFSDRSE 291 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCC-CHHHeeecCCccccchhhhHH
Confidence 456778889999998863 12222345689999999999 44422 344444433 58999999999865432 1
Q ss_pred ----hhhCCCCCCEEe
Q 040379 355 ----SIGQMSKLRTLS 366 (373)
Q Consensus 355 ----~~~~l~~L~~L~ 366 (373)
.-..+|+|..||
T Consensus 292 yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 292 YVSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHHhcchheeec
Confidence 112457776664
No 92
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=69.80 E-value=3.6 Score=29.71 Aligned_cols=18 Identities=33% Similarity=0.340 Sum_probs=7.9
Q ss_pred CccchhhHHHHHHHHHHHH
Q 040379 1 MTVGIKFLQHLFLLLILFQ 19 (373)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (373)
|+ ++.++..+++++++++
T Consensus 1 Ma-SK~~llL~l~LA~lLl 18 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAALLL 18 (95)
T ss_pred Cc-hhHHHHHHHHHHHHHH
Confidence 66 4444444333333333
No 93
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=67.89 E-value=36 Score=32.35 Aligned_cols=61 Identities=26% Similarity=0.153 Sum_probs=27.2
Q ss_pred CCCEEeCcCCccccCcccccC---CCCCCCEEEccCCCCCCCCCCc--ccCCCCCCCEEEccCccC
Q 040379 135 KLSYLDLSFAEFEGPIPSHLG---NLSALQHLDLSLNHLFSAGNLD--WLSHLSSLTYLDLGSNNL 195 (373)
Q Consensus 135 ~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L~L~~n~~~~~~~~~--~~~~l~~L~~L~l~~n~~ 195 (373)
.+.+++++.|.....+|..+. .-..++.++.+...+....... ..+.-+++...+++.|..
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 455666666655555554332 1223455555544442111111 223344555555555543
No 94
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=61.44 E-value=6.4 Score=20.44 Aligned_cols=13 Identities=38% Similarity=0.631 Sum_probs=8.6
Q ss_pred CCCCCEEeCcCCC
Q 040379 359 MSKLRTLSLNGNS 371 (373)
Q Consensus 359 l~~L~~L~l~~n~ 371 (373)
+++|+.|+|++|+
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 3567777777764
No 95
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein. ENOD3 is expressed in the late stages of root nodule formation and contains two pairs of cysteine residues toward the proteins C terminus which may be involved in metal-binding [].; GO: 0046872 metal ion binding, 0009878 nodule morphogenesis
Probab=43.93 E-value=28 Score=21.99 Aligned_cols=22 Identities=27% Similarity=0.473 Sum_probs=17.2
Q ss_pred CccchhhHHHHHHHHHHHHhhc
Q 040379 1 MTVGIKFLQHLFLLLILFQLEP 22 (373)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (373)
||.-++|+..+.+++.+++++.
T Consensus 1 Ma~ilKFvY~mIiflslflv~~ 22 (54)
T PF07127_consen 1 MAKILKFVYAMIIFLSLFLVVT 22 (54)
T ss_pred CccchhhHHHHHHHHHHHHhhc
Confidence 8888999988777777777554
No 96
>PRK14745 RepA leader peptide Tap; Provisional
Probab=28.83 E-value=87 Score=16.01 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=13.6
Q ss_pred hhhHHHHHHHHHHHHhhccc
Q 040379 5 IKFLQHLFLLLILFQLEPRV 24 (373)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~ 24 (373)
++.++.+++..+++...+++
T Consensus 2 lrk~qylfl~hlllpcnisa 21 (26)
T PRK14745 2 LRKFQYLFLWHLLLPCIVSA 21 (26)
T ss_pred hHHHHHHHHHHHHhhccccc
Confidence 45678888887777665543
No 97
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=24.52 E-value=48 Score=17.30 Aligned_cols=11 Identities=36% Similarity=0.319 Sum_probs=5.4
Q ss_pred CCEEEccCccC
Q 040379 185 LTYLDLGSNNL 195 (373)
Q Consensus 185 L~~L~l~~n~~ 195 (373)
|++|++....+
T Consensus 2 LKtL~L~~v~f 12 (26)
T PF07723_consen 2 LKTLHLDSVVF 12 (26)
T ss_pred CeEEEeeEEEE
Confidence 44555554444
No 98
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=22.97 E-value=50 Score=38.60 Aligned_cols=33 Identities=18% Similarity=0.229 Sum_probs=25.5
Q ss_pred EccCccccccccccccCCCCCCEEEccCCcCcc
Q 040379 267 GLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEG 299 (373)
Q Consensus 267 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 299 (373)
||++|+|+...+..|..+++|+.|+|++|.+.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 577888886556667788888888888888763
No 99
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=22.92 E-value=1.5e+02 Score=25.13 Aligned_cols=38 Identities=16% Similarity=0.012 Sum_probs=14.9
Q ss_pred ccCEEECCCCcCCCCchhHHHhccccCcEEEccCcccc
Q 040379 237 SLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLR 274 (373)
Q Consensus 237 ~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 274 (373)
+|+.-|+++..+...+.....-.+.+++-=.+.+|.+.
T Consensus 172 ~lerADl~gsil~cA~L~~v~~lcaN~eGA~L~gcNfe 209 (302)
T KOG1665|consen 172 KLERADLEGSILHCAILREVEMLCANAEGASLKGCNFE 209 (302)
T ss_pred hhcccccccchhhhhhhhhhhheecccccccccCcCCC
Confidence 34444444433332222222223334444444444443
No 100
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=22.54 E-value=80 Score=30.12 Aligned_cols=108 Identities=19% Similarity=0.129 Sum_probs=60.4
Q ss_pred CccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccc---cCCCCCCEEEccCCcCcccccccccC---CC
Q 040379 236 TSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAF---KHMVSVSFLGLASNEFEGGVPDFFGN---MC 309 (373)
Q Consensus 236 ~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~L~~n~l~~~~~~~l~~---l~ 309 (373)
+.+++++++.|.+.+..|..+.... --+.++.|+++...-..+ ..-..+.+++++.|...+.+|..+.. -.
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~---~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~ 241 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPG---NPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTL 241 (553)
T ss_pred chhhhhccCCCcccccCCccccCCC---CccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhh
Confidence 6789999999998877766544332 125566666554221111 11135788888888887777765432 23
Q ss_pred CCCeEeCcCCcCcccCchhhhcc--CCCCccCEEECcCCcC
Q 040379 310 SLTMLNISDNKLRGHFPELIQNL--SRFSSLKELYLENNRL 348 (373)
Q Consensus 310 ~L~~L~L~~n~l~~~~p~~~~~l--~~~~~L~~L~L~~n~l 348 (373)
.++.++.+.-.+.-. ..+..+ ..-.+|...+++.|..
T Consensus 242 vl~~ld~s~tgirlD--~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 242 VLFKLDRSTTGIRLD--LLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred hhhcccccccccchh--hcccccccccccccchhhhccCCC
Confidence 466666665544311 111111 1123566777776654
Done!