Query 040379
Match_columns 373
No_of_seqs 447 out of 3740
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 12:26:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040379.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040379hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 4.8E-44 1.7E-48 322.6 19.1 293 32-371 2-302 (313)
2 3rgz_A Protein brassinosteroid 100.0 3.8E-43 1.3E-47 353.3 24.0 315 31-372 7-355 (768)
3 4eco_A Uncharacterized protein 100.0 3.7E-41 1.3E-45 331.7 21.5 323 32-373 26-470 (636)
4 4ecn_A Leucine-rich repeat pro 100.0 1.4E-39 4.9E-44 326.6 21.5 320 31-372 264-709 (876)
5 3rgz_A Protein brassinosteroid 100.0 5.7E-37 2E-41 308.3 23.6 267 96-373 379-717 (768)
6 3v47_A TOLL-like receptor 5B a 100.0 3E-36 1E-40 285.9 25.3 298 65-372 5-383 (455)
7 2id5_A Lingo-1, leucine rich r 100.0 4.5E-34 1.5E-38 272.5 24.1 266 96-372 67-332 (477)
8 3v47_A TOLL-like receptor 5B a 100.0 7E-34 2.4E-38 269.5 21.6 282 80-373 54-408 (455)
9 4fcg_A Uncharacterized protein 100.0 5.8E-35 2E-39 264.8 12.8 282 31-348 22-313 (328)
10 3t6q_A CD180 antigen; protein- 100.0 3.3E-33 1.1E-37 274.3 25.9 278 81-372 255-535 (606)
11 3vq2_A TLR4, TOLL-like recepto 100.0 2.3E-32 7.8E-37 268.3 26.3 135 236-373 399-534 (606)
12 2z81_A CD282 antigen, TOLL-lik 100.0 5E-33 1.7E-37 269.9 21.2 169 67-247 3-183 (549)
13 3o6n_A APL1; leucine-rich repe 100.0 2.8E-32 9.5E-37 253.4 24.6 272 81-372 46-351 (390)
14 2id5_A Lingo-1, leucine rich r 100.0 8.2E-33 2.8E-37 263.8 21.5 278 80-373 32-309 (477)
15 1xku_A Decorin; proteoglycan, 100.0 9.7E-32 3.3E-36 244.1 26.8 289 65-371 28-330 (330)
16 2ft3_A Biglycan; proteoglycan, 100.0 4.2E-32 1.4E-36 246.7 23.4 286 67-371 32-331 (332)
17 3oja_B Anopheles plasmodium-re 100.0 9.1E-32 3.1E-36 263.2 26.5 262 96-372 62-357 (597)
18 3t6q_A CD180 antigen; protein- 100.0 8.6E-32 2.9E-36 264.2 25.7 278 80-372 33-388 (606)
19 3j0a_A TOLL-like receptor 5; m 100.0 4.1E-32 1.4E-36 275.7 23.0 295 68-373 14-375 (844)
20 4eco_A Uncharacterized protein 100.0 1.7E-32 5.9E-37 270.0 18.2 246 109-372 305-578 (636)
21 1ziw_A TOLL-like receptor 3; i 100.0 3.9E-31 1.3E-35 262.9 26.3 283 80-372 25-365 (680)
22 2z7x_B TOLL-like receptor 1, v 100.0 4.3E-32 1.5E-36 261.6 18.2 131 236-373 324-457 (520)
23 1xku_A Decorin; proteoglycan, 100.0 9.3E-31 3.2E-35 237.6 25.1 266 82-373 33-306 (330)
24 4g8a_A TOLL-like receptor 4; l 100.0 4.8E-31 1.7E-35 259.9 24.7 283 80-373 52-580 (635)
25 2z7x_B TOLL-like receptor 1, v 100.0 1.3E-30 4.4E-35 251.3 25.7 275 80-373 45-481 (520)
26 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.8E-31 6.2E-36 259.5 19.5 109 80-197 52-160 (562)
27 4ecn_A Leucine-rich repeat pro 100.0 3.3E-31 1.1E-35 266.1 21.7 272 80-372 491-818 (876)
28 1ogq_A PGIP-2, polygalacturona 100.0 4.7E-32 1.6E-36 244.2 13.6 229 109-373 50-281 (313)
29 2z63_A TOLL-like receptor 4, v 100.0 6.6E-31 2.3E-35 256.0 22.4 135 236-373 396-531 (570)
30 3vq2_A TLR4, TOLL-like recepto 100.0 9.4E-31 3.2E-35 256.8 21.7 108 263-373 401-510 (606)
31 2ft3_A Biglycan; proteoglycan, 100.0 1.9E-30 6.5E-35 235.8 22.1 265 82-373 35-307 (332)
32 2z80_A TOLL-like receptor 2, v 100.0 6.2E-31 2.1E-35 241.1 17.6 273 64-352 26-317 (353)
33 1ziw_A TOLL-like receptor 3; i 100.0 7E-30 2.4E-34 253.9 26.0 206 80-294 49-305 (680)
34 4fmz_A Internalin; leucine ric 100.0 3.5E-29 1.2E-33 228.9 28.4 261 80-373 66-346 (347)
35 4fmz_A Internalin; leucine ric 100.0 5.3E-29 1.8E-33 227.6 29.2 260 80-373 44-324 (347)
36 2z63_A TOLL-like receptor 4, v 100.0 5.3E-30 1.8E-34 249.6 22.5 91 280-373 416-507 (570)
37 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 8.3E-30 2.8E-34 247.8 23.6 271 80-373 76-510 (562)
38 3j0a_A TOLL-like receptor 5; m 100.0 2.2E-30 7.6E-35 263.0 18.5 259 107-373 22-351 (844)
39 2z66_A Variable lymphocyte rec 100.0 3.7E-30 1.3E-34 231.2 17.1 257 66-351 5-263 (306)
40 2z81_A CD282 antigen, TOLL-lik 100.0 3.6E-30 1.2E-34 249.7 17.9 137 80-224 50-211 (549)
41 4fcg_A Uncharacterized protein 100.0 1.1E-29 3.9E-34 230.0 19.9 235 107-372 79-313 (328)
42 2z66_A Variable lymphocyte rec 100.0 6.8E-30 2.3E-34 229.5 18.0 248 112-373 10-261 (306)
43 3zyj_A Leucine-rich repeat-con 100.0 3.5E-29 1.2E-33 236.2 23.5 237 100-351 57-294 (440)
44 3zyi_A Leucine-rich repeat-con 100.0 3.4E-29 1.2E-33 237.0 23.4 237 100-351 68-305 (452)
45 3o6n_A APL1; leucine-rich repe 100.0 2.2E-29 7.6E-34 233.8 20.2 252 107-373 43-331 (390)
46 3zyj_A Leucine-rich repeat-con 100.0 7E-29 2.4E-33 234.1 22.8 230 80-323 64-293 (440)
47 1ozn_A Reticulon 4 receptor; N 100.0 7.6E-29 2.6E-33 220.3 20.5 252 108-371 31-285 (285)
48 1o6v_A Internalin A; bacterial 100.0 6.1E-28 2.1E-32 229.3 27.4 262 80-373 68-366 (466)
49 3oja_B Anopheles plasmodium-re 100.0 5.3E-29 1.8E-33 243.7 20.5 252 107-373 49-337 (597)
50 3zyi_A Leucine-rich repeat-con 100.0 1.5E-28 5E-33 232.7 22.7 230 80-324 75-305 (452)
51 3o53_A Protein LRIM1, AGAP0063 100.0 2.4E-30 8.2E-35 233.5 8.0 250 96-369 21-271 (317)
52 1o6v_A Internalin A; bacterial 100.0 1.5E-27 5.1E-32 226.7 27.5 257 80-373 90-388 (466)
53 2z80_A TOLL-like receptor 2, v 100.0 8.2E-29 2.8E-33 226.9 17.5 280 72-373 27-314 (353)
54 1wwl_A Monocyte differentiatio 100.0 2.5E-30 8.6E-35 232.9 6.7 251 104-373 38-309 (312)
55 3bz5_A Internalin-J, INLJ; leu 100.0 1.9E-27 6.5E-32 224.7 26.6 238 105-373 81-352 (457)
56 4g8a_A TOLL-like receptor 4; l 100.0 1.4E-27 4.7E-32 235.2 26.6 142 100-250 45-187 (635)
57 1wwl_A Monocyte differentiatio 100.0 8.2E-31 2.8E-35 236.1 2.6 269 56-351 22-311 (312)
58 3bz5_A Internalin-J, INLJ; leu 100.0 3E-27 1E-31 223.4 24.9 251 80-373 85-387 (457)
59 3oja_A Leucine-rich immune mol 100.0 5.4E-29 1.8E-33 237.3 12.2 238 107-368 32-270 (487)
60 1ozn_A Reticulon 4 receptor; N 100.0 2.3E-27 7.8E-32 210.8 21.5 228 112-353 14-242 (285)
61 3g06_A SSPH2 (leucine-rich rep 99.9 1.1E-26 3.7E-31 226.2 20.7 261 63-373 17-297 (622)
62 3o53_A Protein LRIM1, AGAP0063 99.9 1.1E-27 3.8E-32 216.0 11.4 238 111-373 12-250 (317)
63 2o6q_A Variable lymphocyte rec 99.9 1.1E-25 3.8E-30 198.3 23.6 218 65-323 2-219 (270)
64 3oja_A Leucine-rich immune mol 99.9 9.1E-27 3.1E-31 221.9 17.0 218 132-373 32-250 (487)
65 1jl5_A Outer protein YOPM; leu 99.9 2.4E-25 8.1E-30 210.2 23.8 231 104-373 148-409 (454)
66 1z7x_W Ribonuclease inhibitor; 99.9 3.2E-28 1.1E-32 231.0 1.5 282 81-373 86-411 (461)
67 1jl5_A Outer protein YOPM; leu 99.9 2.3E-26 7.9E-31 217.1 13.9 199 134-372 91-289 (454)
68 2z62_A TOLL-like receptor 4, v 99.9 2.3E-25 7.7E-30 196.9 17.5 226 113-353 11-241 (276)
69 1z7x_W Ribonuclease inhibitor; 99.9 1.3E-27 4.4E-32 226.8 2.3 283 80-373 56-383 (461)
70 2z62_A TOLL-like receptor 4, v 99.9 1.2E-24 4.2E-29 192.2 20.3 216 100-326 21-241 (276)
71 2o6q_A Variable lymphocyte rec 99.9 3E-24 1E-28 189.1 22.0 206 134-352 16-221 (270)
72 3rfs_A Internalin B, repeat mo 99.9 4.3E-25 1.5E-29 194.7 16.5 209 105-332 37-245 (272)
73 2ast_B S-phase kinase-associat 99.9 1.3E-26 4.4E-31 210.8 6.3 272 64-358 33-315 (336)
74 3goz_A Leucine-rich repeat-con 99.9 3.4E-26 1.2E-30 210.2 7.2 258 94-354 7-302 (362)
75 1p9a_G Platelet glycoprotein I 99.9 5.4E-24 1.8E-28 189.2 21.1 204 105-323 6-209 (290)
76 3rfs_A Internalin B, repeat mo 99.9 1.3E-24 4.3E-29 191.7 16.8 229 109-361 19-247 (272)
77 2ca6_A RAN GTPase-activating p 99.9 4.6E-26 1.6E-30 211.2 4.5 248 100-353 23-320 (386)
78 2ast_B S-phase kinase-associat 99.9 1.7E-25 5.7E-30 203.4 7.7 249 110-373 48-306 (336)
79 1p9a_G Platelet glycoprotein I 99.9 1.3E-23 4.4E-28 186.8 19.0 204 130-350 6-209 (290)
80 2ca6_A RAN GTPase-activating p 99.9 1.1E-25 3.8E-30 208.6 5.5 247 126-373 24-316 (386)
81 3g06_A SSPH2 (leucine-rich rep 99.9 6.2E-23 2.1E-27 199.8 22.4 232 80-358 61-306 (622)
82 3goz_A Leucine-rich repeat-con 99.9 5.6E-25 1.9E-29 202.0 7.5 257 114-372 3-296 (362)
83 4glp_A Monocyte differentiatio 99.9 2.6E-24 8.9E-29 193.4 11.1 182 180-373 114-307 (310)
84 1h6u_A Internalin H; cell adhe 99.9 7.2E-23 2.5E-27 183.7 18.7 193 107-323 39-231 (308)
85 4glp_A Monocyte differentiatio 99.9 7.4E-24 2.5E-28 190.4 10.4 231 107-351 62-309 (310)
86 1h6u_A Internalin H; cell adhe 99.9 2.2E-22 7.4E-27 180.5 19.6 210 114-352 24-233 (308)
87 2xwt_C Thyrotropin receptor; s 99.9 4.8E-23 1.7E-27 178.0 13.4 196 109-318 31-235 (239)
88 3m19_A Variable lymphocyte rec 99.9 2.4E-22 8.3E-27 174.9 17.5 181 158-351 14-194 (251)
89 3m19_A Variable lymphocyte rec 99.9 6E-22 2.1E-26 172.4 18.9 180 110-324 15-194 (251)
90 2xwt_C Thyrotropin receptor; s 99.9 6.9E-23 2.3E-27 177.0 12.3 204 126-370 26-236 (239)
91 2o6s_A Variable lymphocyte rec 99.9 2.2E-21 7.5E-26 163.9 16.6 186 66-286 5-190 (208)
92 4ay9_X Follicle-stimulating ho 99.9 1.4E-21 4.7E-26 178.6 15.1 230 100-346 23-256 (350)
93 3ogk_B Coronatine-insensitive 99.9 1.9E-23 6.5E-28 204.3 2.9 216 150-373 285-526 (592)
94 3ogk_B Coronatine-insensitive 99.9 2.8E-23 9.7E-28 203.0 1.5 136 236-373 342-501 (592)
95 3cvr_A Invasion plasmid antige 99.9 1.2E-20 4.2E-25 181.5 18.1 189 109-333 59-254 (571)
96 3cvr_A Invasion plasmid antige 99.9 2.1E-20 7.2E-25 179.9 19.1 197 69-308 49-253 (571)
97 4ay9_X Follicle-stimulating ho 99.8 1.6E-20 5.5E-25 171.5 15.9 237 68-320 9-257 (350)
98 2o6s_A Variable lymphocyte rec 99.8 2.6E-20 9.1E-25 157.2 16.0 180 112-333 10-189 (208)
99 3e6j_A Variable lymphocyte rec 99.8 2.8E-19 9.4E-24 153.2 18.3 163 63-253 14-176 (229)
100 2v70_A SLIT-2, SLIT homolog 2 99.8 5.6E-20 1.9E-24 156.5 13.9 154 186-351 14-168 (220)
101 1m9s_A Internalin B; cell inva 99.8 1.2E-19 4E-24 176.5 17.7 175 105-301 39-213 (605)
102 2p1m_B Transport inhibitor res 99.8 4.5E-22 1.5E-26 194.6 -0.4 187 181-372 287-518 (594)
103 1h6t_A Internalin B; cell adhe 99.8 1.1E-19 3.8E-24 161.5 14.8 172 106-299 43-214 (291)
104 1h6t_A Internalin B; cell adhe 99.8 1.1E-19 3.8E-24 161.5 14.4 193 135-353 25-217 (291)
105 2xot_A Amphoterin-induced prot 99.8 1.2E-19 4.1E-24 166.3 13.4 178 161-351 21-204 (361)
106 2v9t_B SLIT homolog 2 protein 99.8 2.7E-19 9.2E-24 152.3 14.0 153 186-350 14-166 (220)
107 1m9s_A Internalin B; cell inva 99.8 3.1E-19 1.1E-23 173.5 15.2 193 108-324 20-212 (605)
108 2p1m_B Transport inhibitor res 99.8 1.3E-21 4.3E-26 191.4 -1.7 282 80-373 105-494 (594)
109 1dce_A Protein (RAB geranylger 99.8 7.6E-23 2.6E-27 197.7 -13.0 205 131-367 346-567 (567)
110 4ezg_A Putative uncharacterize 99.8 7.7E-19 2.6E-23 146.9 12.8 151 208-373 43-194 (197)
111 3e6j_A Variable lymphocyte rec 99.8 2.6E-18 9E-23 147.1 16.1 157 184-353 20-176 (229)
112 4b8c_D Glucose-repressible alc 99.8 4.1E-20 1.4E-24 183.9 4.9 263 32-322 128-404 (727)
113 2v9t_B SLIT homolog 2 protein 99.8 3.5E-18 1.2E-22 145.4 14.6 116 204-323 51-166 (220)
114 2xot_A Amphoterin-induced prot 99.8 2.7E-18 9.4E-23 157.3 15.0 179 136-324 20-204 (361)
115 2v70_A SLIT-2, SLIT homolog 2 99.8 4.6E-18 1.6E-22 144.7 14.8 55 112-170 14-69 (220)
116 4ezg_A Putative uncharacterize 99.8 5E-18 1.7E-22 141.9 13.0 153 156-322 42-194 (197)
117 1dce_A Protein (RAB geranylger 99.8 9.7E-22 3.3E-26 189.9 -11.3 207 106-343 346-567 (567)
118 1xeu_A Internalin C; cellular 99.8 8.3E-19 2.8E-23 153.4 7.0 171 107-300 17-187 (263)
119 1xeu_A Internalin C; cellular 99.7 2.9E-18 9.8E-23 150.0 8.6 152 104-276 36-187 (263)
120 1w8a_A SLIT protein; signaling 99.7 1.4E-17 4.9E-22 138.5 11.6 132 212-352 11-142 (192)
121 4b8c_D Glucose-repressible alc 99.7 1.4E-18 4.9E-23 172.8 3.3 181 109-303 173-359 (727)
122 2ell_A Acidic leucine-rich nuc 99.7 4.2E-17 1.5E-21 132.6 11.1 106 263-372 51-159 (168)
123 2wfh_A SLIT homolog 2 protein 99.7 1.2E-16 4E-21 133.0 12.0 128 212-350 13-140 (193)
124 1w8a_A SLIT protein; signaling 99.7 2.1E-16 7.2E-21 131.4 12.2 132 186-326 11-143 (192)
125 2je0_A Acidic leucine-rich nuc 99.7 8.6E-17 2.9E-21 128.0 9.0 128 236-369 17-149 (149)
126 2o6r_A Variable lymphocyte rec 99.7 3.6E-16 1.2E-20 128.2 12.9 133 211-353 9-141 (177)
127 2ell_A Acidic leucine-rich nuc 99.7 3.2E-16 1.1E-20 127.4 10.2 137 209-351 24-162 (168)
128 2je0_A Acidic leucine-rich nuc 99.7 3.6E-16 1.2E-20 124.4 9.5 127 209-344 17-148 (149)
129 3sb4_A Hypothetical leucine ri 99.6 1.3E-15 4.6E-20 137.6 12.6 245 108-367 48-328 (329)
130 1a9n_A U2A', U2A'; complex (nu 99.6 1E-15 3.5E-20 125.4 10.3 130 236-371 19-151 (176)
131 2o6r_A Variable lymphocyte rec 99.6 6.1E-15 2.1E-19 120.8 13.1 114 209-326 28-141 (177)
132 2wfh_A SLIT homolog 2 protein 99.6 2.9E-14 9.9E-19 118.5 15.2 128 113-251 14-141 (193)
133 3sb4_A Hypothetical leucine ri 99.6 1.6E-15 5.4E-20 137.1 6.9 241 80-343 49-328 (329)
134 1ds9_A Outer arm dynein; leuci 99.6 1.8E-17 6E-22 138.7 -5.7 111 204-323 43-154 (198)
135 1a9n_A U2A', U2A'; complex (nu 99.6 8E-15 2.7E-19 120.0 8.6 105 210-322 43-153 (176)
136 3g39_A Variable lymphocyte rec 99.5 2.8E-14 9.6E-19 116.0 11.1 110 237-353 10-119 (170)
137 2r9u_A Variable lymphocyte rec 99.5 5.8E-14 2E-18 114.6 11.1 108 238-352 14-121 (174)
138 3un9_A NLR family member X1; l 99.5 4.1E-15 1.4E-19 136.3 3.4 188 182-372 71-282 (372)
139 4fdw_A Leucine rich hypothetic 99.5 9.9E-13 3.4E-17 121.6 18.6 244 104-370 131-380 (401)
140 3g39_A Variable lymphocyte rec 99.5 9.8E-14 3.3E-18 112.8 9.9 109 210-325 10-118 (170)
141 1ds9_A Outer arm dynein; leuci 99.5 2.4E-16 8.2E-21 131.8 -6.6 82 236-322 93-185 (198)
142 3un9_A NLR family member X1; l 99.5 5.1E-15 1.7E-19 135.7 1.0 194 157-351 71-285 (372)
143 4fdw_A Leucine rich hypothetic 99.5 3.5E-12 1.2E-16 117.9 19.5 242 107-372 111-357 (401)
144 2r9u_A Variable lymphocyte rec 99.5 2.3E-13 8E-18 110.9 10.1 107 211-324 14-120 (174)
145 2ifg_A High affinity nerve gro 99.3 3.6E-12 1.2E-16 115.8 11.1 106 239-351 11-118 (347)
146 2ifg_A High affinity nerve gro 99.2 4.7E-11 1.6E-15 108.4 10.1 106 212-324 11-118 (347)
147 2ra8_A Uncharacterized protein 99.1 8.3E-11 2.8E-15 106.9 8.7 207 157-371 106-341 (362)
148 4fs7_A Uncharacterized protein 99.1 1.9E-09 6.5E-14 99.6 17.2 84 280-369 292-375 (394)
149 2ra8_A Uncharacterized protein 99.1 1.9E-10 6.4E-15 104.6 8.3 183 152-347 133-341 (362)
150 4gt6_A Cell surface protein; l 99.0 4.2E-08 1.4E-12 90.5 19.0 87 102-192 80-169 (394)
151 4fs7_A Uncharacterized protein 98.9 2.7E-08 9.1E-13 91.9 14.1 237 104-365 157-393 (394)
152 1io0_A Tropomodulin; LRR prote 98.8 1.9E-09 6.5E-14 88.5 4.5 114 236-349 36-164 (185)
153 1io0_A Tropomodulin; LRR prote 98.8 4.3E-09 1.5E-13 86.4 4.0 122 201-322 28-164 (185)
154 3rw6_A Nuclear RNA export fact 98.7 3E-09 1E-13 91.9 3.0 82 282-366 167-257 (267)
155 4h09_A Hypothetical leucine ri 98.7 2E-06 6.7E-11 78.8 19.6 77 81-168 47-123 (379)
156 3e4g_A ATP synthase subunit S, 98.6 1.5E-08 5E-13 81.4 3.4 86 262-350 62-154 (176)
157 4gt6_A Cell surface protein; l 98.6 3.7E-06 1.3E-10 77.4 18.1 246 103-371 108-389 (394)
158 3e4g_A ATP synthase subunit S, 98.4 1E-07 3.5E-12 76.5 3.3 82 237-319 62-149 (176)
159 3rw6_A Nuclear RNA export fact 98.3 1E-06 3.5E-11 76.0 7.2 84 258-342 167-257 (267)
160 4h09_A Hypothetical leucine ri 98.2 0.00013 4.5E-09 66.5 19.6 117 236-360 240-356 (379)
161 1pgv_A TMD-1, tropomodulin TMD 98.0 6.8E-06 2.3E-10 67.1 5.4 84 236-319 41-136 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.9 6.6E-06 2.2E-10 67.2 4.3 59 236-294 70-135 (197)
163 3rfe_A Platelet glycoprotein I 97.3 0.0004 1.4E-08 52.8 5.5 58 288-350 11-69 (130)
164 3rfe_A Platelet glycoprotein I 96.7 0.003 1E-07 47.9 6.1 56 265-322 12-68 (130)
165 2lz0_A Uncharacterized protein 40.5 34 0.0012 23.8 4.1 40 278-318 13-52 (100)
166 2lz0_A Uncharacterized protein 39.7 51 0.0017 22.9 4.9 13 153-165 38-50 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=4.8e-44 Score=322.57 Aligned_cols=293 Identities=29% Similarity=0.472 Sum_probs=196.9
Q ss_pred CCcHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCc--ccceEecCCC--CcEEEEEcCCCCCCCCCcce--ecCccc
Q 040379 32 RCIDEEREALLTFKESLVDESGVLSSWGPEDEKRDCCK--WTGVGCSNRT--GHVIKLEIQPIDFDSFPLRG--TISPAL 105 (373)
Q Consensus 32 ~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~c~--w~~v~c~~~~--~~v~~l~l~~~~l~~~~l~~--~~~~~l 105 (373)
.|.++|++||++||+++.+|. .+.+|. .+.+||. |.||.|+... ++|+.++++++ .+.| .+|+.+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~---~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~-----~l~~~~~~~~~l 72 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL-----NLPKPYPIPSSL 72 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEECC-----CCSSCEECCGGG
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCC---CCCCCCcCCCcceEeCCCCCCceEEEEECCCC-----CccCCcccChhH
Confidence 499999999999999998775 678997 4678998 9999998654 79999999986 7777 889999
Q ss_pred cCCCCCCEEeCCC-CCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCC
Q 040379 106 LQLHRLTYLDLSL-NNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSS 184 (373)
Q Consensus 106 ~~l~~L~~L~l~~-n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~ 184 (373)
.++++|++|++++ |.+.+. +|..++++++|++|++++|++++.+|..+.++++|++|++++|.+.. ..+..+..+++
T Consensus 73 ~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~ 150 (313)
T 1ogq_A 73 ANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG-TLPPSISSLPN 150 (313)
T ss_dssp GGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES-CCCGGGGGCTT
T ss_pred hCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCC-cCChHHhcCCC
Confidence 9999999999995 888875 88889999999999999999988888888889999999998888832 23344556666
Q ss_pred CCEEEccCccCCCCcchhhhhCCCC-CCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccC
Q 040379 185 LTYLDLGSNNLSRSTDWLQVVGNLP-LLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNL 263 (373)
Q Consensus 185 L~~L~l~~n~~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L 263 (373)
|++|++++|.+.+. ++..+..++ +|++|++++|.+++..|..+..+ + |
T Consensus 151 L~~L~L~~N~l~~~--~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l---~--------------------------L 199 (313)
T 1ogq_A 151 LVGITFDGNRISGA--IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL---N--------------------------L 199 (313)
T ss_dssp CCEEECCSSCCEEE--CCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC---C--------------------------C
T ss_pred CCeEECcCCcccCc--CCHHHhhhhhcCcEEECcCCeeeccCChHHhCC---c--------------------------c
Confidence 66666666655431 334444444 44444444444444444444443 2 5
Q ss_pred cEEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEEC
Q 040379 264 VLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYL 343 (373)
Q Consensus 264 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L 343 (373)
+.|++++|.+++..|..+..+++|+.|++++|.+++.+|. +..+++|++|++++|++++.+|..+..++ +|++|++
T Consensus 200 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~---~L~~L~L 275 (313)
T 1ogq_A 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLK---FLHSLNV 275 (313)
T ss_dssp SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCT---TCCEEEC
T ss_pred cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCc---CCCEEEC
Confidence 5555555555555555555555555555555555543333 44455555555555555555555444443 5555555
Q ss_pred cCCcCcccCchhhhCCCCCCEEeCcCCC
Q 040379 344 ENNRLNGFTNNSIGQMSKLRTLSLNGNS 371 (373)
Q Consensus 344 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 371 (373)
++|++++.+|.. ..+++|+.+++++|+
T Consensus 276 s~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 276 SFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred cCCcccccCCCC-ccccccChHHhcCCC
Confidence 555555555533 445555555555554
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.8e-43 Score=353.27 Aligned_cols=315 Identities=30% Similarity=0.456 Sum_probs=220.9
Q ss_pred CCCcHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcccceEecCCCCcEEEEEcCCCCCCCCCccee---cCccccC
Q 040379 31 IRCIDEEREALLTFKESLVDESGVLSSWGPEDEKRDCCKWTGVGCSNRTGHVIKLEIQPIDFDSFPLRGT---ISPALLQ 107 (373)
Q Consensus 31 ~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~c~w~~v~c~~~~~~v~~l~l~~~~l~~~~l~~~---~~~~l~~ 107 (373)
..+.++|++||++||+++.||. .+.+|. .+.+||.|.||+|+ .++|+.+++++. ++.|. +|+.+.+
T Consensus 7 ~~~~~~~~~all~~k~~~~~~~-~l~~W~---~~~~~C~w~gv~C~--~~~v~~L~L~~~-----~l~g~~~~l~~~l~~ 75 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLPDKN-LLPDWS---SNKNPCTFDGVTCR--DDKVTSIDLSSK-----PLNVGFSAVSSSLLS 75 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCSCTT-SSTTCC---TTSCGGGSTTEEEE--TTEEEEEECTTS-----CCCEEHHHHHHHTTT
T ss_pred ccCCHHHHHHHHHHHhhCCCcc-cccCCC---CCCCCcCCcceEEC--CCcEEEEECCCC-----CcCCccCccChhHhc
Confidence 3457889999999999999887 889997 47899999999998 689999999986 55565 5554444
Q ss_pred C-----------------------CCCCEEeCCCCCCCCCCCcc--ccCCCCCCCEEeCcCCccccCccccc-CCCCCCC
Q 040379 108 L-----------------------HRLTYLDLSLNNFSGSPIPE--FIGSLTKLSYLDLSFAEFEGPIPSHL-GNLSALQ 161 (373)
Q Consensus 108 l-----------------------~~L~~L~l~~n~l~~~~~~~--~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~ 161 (373)
+ ++|++|++++|.+++. +|. .++++++|++|++++|.+.+.+|..+ .++++|+
T Consensus 76 L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 154 (768)
T 3rgz_A 76 LTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 154 (768)
T ss_dssp CTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCS
T ss_pred cCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCC
Confidence 4 4555555555544442 343 44445555555555554444444433 4445555
Q ss_pred EEEccCCCCCCCCCCcc---cCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCcc
Q 040379 162 HLDLSLNHLFSAGNLDW---LSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSL 238 (373)
Q Consensus 162 ~L~L~~n~~~~~~~~~~---~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L 238 (373)
+|++++|.+... .+.. +.++++|++|++++|.+.+.. ....+++|++|++++|.+.+..|. ++.+ ++|
T Consensus 155 ~L~Ls~n~l~~~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l---~~L 225 (768)
T 3rgz_A 155 VLDLSANSISGA-NVVGWVLSDGCGELKHLAISGNKISGDV----DVSRCVNLEFLDVSSNNFSTGIPF-LGDC---SAL 225 (768)
T ss_dssp EEECCSSCCEEE-THHHHHHTTCCTTCCEEECCSSEEESCC----BCTTCTTCCEEECCSSCCCSCCCB-CTTC---CSC
T ss_pred EEECCCCccCCc-CChhhhhhccCCCCCEEECCCCcccccC----CcccCCcCCEEECcCCcCCCCCcc-cccC---CCC
Confidence 555555544211 1111 445555555555555554431 126677788888888877776665 6666 888
Q ss_pred CEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCC-CCCCeEeCc
Q 040379 239 QFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNM-CSLTMLNIS 317 (373)
Q Consensus 239 ~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~ 317 (373)
++|++++|.+++.+|..+.. +++|++|++++|.+++.+|.. .+++|++|++++|.+++.+|..+... ++|++|+++
T Consensus 226 ~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls 302 (768)
T 3rgz_A 226 QHLDISGNKLSGDFSRAIST-CTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 302 (768)
T ss_dssp CEEECCSSCCCSCHHHHTTT-CSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECC
T ss_pred CEEECcCCcCCCcccHHHhc-CCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECc
Confidence 88888888888766665544 445888888888888777664 77888888888888888888777664 889999999
Q ss_pred CCcCcccCchhhhccCCCCccCEEECcCCcCcccCchh-hhCCCCCCEEeCcCCCC
Q 040379 318 DNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNS-IGQMSKLRTLSLNGNSL 372 (373)
Q Consensus 318 ~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l 372 (373)
+|++++.+|..+..++ +|++|++++|.+++.+|.. +.++++|++|++++|++
T Consensus 303 ~n~l~~~~p~~~~~l~---~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 303 GNHFYGAVPPFFGSCS---LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355 (768)
T ss_dssp SSEEEECCCGGGGGCT---TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred CCcCCCccchHHhcCC---CccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence 9988888888777666 8899999999988777765 88889999999998875
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.7e-41 Score=331.71 Aligned_cols=323 Identities=21% Similarity=0.296 Sum_probs=263.0
Q ss_pred CCcHHHHHHHHHHhhcCCCCCCC--------CCCCCCCCCCCCCCcc---cceEecCCCCcEEEEEcCCCCCCCCCccee
Q 040379 32 RCIDEEREALLTFKESLVDESGV--------LSSWGPEDEKRDCCKW---TGVGCSNRTGHVIKLEIQPIDFDSFPLRGT 100 (373)
Q Consensus 32 ~~~~~~~~~l~~~~~~~~~~~~~--------~~~w~~~~~~~~~c~w---~~v~c~~~~~~v~~l~l~~~~l~~~~l~~~ 100 (373)
+....|+.||.++++++.++... ..+|+ .+.+||.| .||+|+.. ++|+.++++++ ++.|.
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~---~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~-----~l~g~ 96 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN---FNKELDMWGAQPGVSLNSN-GRVTGLSLEGF-----GASGR 96 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCC---CSSCGGGTTCCTTEEECTT-CCEEEEECTTS-----CCEEE
T ss_pred hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC---CCCCcccccCCCCeEEcCC-CCEEEEEecCc-----ccCCc
Confidence 34567999999999998755322 23798 47899999 99999754 89999999986 89999
Q ss_pred cCccccCCCCCCEEeCCCCCC------CC---------------------------------------------------
Q 040379 101 ISPALLQLHRLTYLDLSLNNF------SG--------------------------------------------------- 123 (373)
Q Consensus 101 ~~~~l~~l~~L~~L~l~~n~l------~~--------------------------------------------------- 123 (373)
+|++++++++|++|++++|.+ .+
T Consensus 97 lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~ 176 (636)
T 4eco_A 97 VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK 176 (636)
T ss_dssp ECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCC
T ss_pred CChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccc
Confidence 999999999999999999854 11
Q ss_pred -------------------CCCccccCCCCCCCEEeCcCCccccC-----------------cccccC--CCCCCCEEEc
Q 040379 124 -------------------SPIPEFIGSLTKLSYLDLSFAEFEGP-----------------IPSHLG--NLSALQHLDL 165 (373)
Q Consensus 124 -------------------~~~~~~l~~l~~L~~L~L~~n~l~~~-----------------~p~~l~--~l~~L~~L~L 165 (373)
..+|..++++++|++|++++|.+++. +|..++ ++++|++|++
T Consensus 177 ~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L 256 (636)
T 4eco_A 177 KSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEV 256 (636)
T ss_dssp CCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEE
T ss_pred cccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEe
Confidence 01677889999999999999999985 999999 9999999999
Q ss_pred cCCCCCCCCCCcccCCCCCCCEEEccCcc-CCCCcchhhhhCCC------CCCcEEEccCCCCCCCCcc--cccCCCCCC
Q 040379 166 SLNHLFSAGNLDWLSHLSSLTYLDLGSNN-LSRSTDWLQVVGNL------PLLTTLYLYRCHLPPIVPL--SLSNLNYST 236 (373)
Q Consensus 166 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~l------~~L~~L~l~~n~l~~~~~~--~~~~l~~~~ 236 (373)
++|.+.. ..+..+.++++|++|++++|+ +++. .+|..++.+ ++|++|++++|.++ .+|. .++.+ +
T Consensus 257 ~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~~l~~~-~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l---~ 330 (636)
T 4eco_A 257 YNCPNLT-KLPTFLKALPEMQLINVACNRGISGE-QLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKM---K 330 (636)
T ss_dssp ECCTTCS-SCCTTTTTCSSCCEEECTTCTTSCHH-HHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTC---T
T ss_pred cCCcCCc-cChHHHhcCCCCCEEECcCCCCCccc-cchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccC---C
Confidence 9999843 445678999999999999998 7651 255666665 99999999999999 6787 88888 8
Q ss_pred ccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCC-CCEEEccCCcCcccccccccCCC--CCCe
Q 040379 237 SLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVS-VSFLGLASNEFEGGVPDFFGNMC--SLTM 313 (373)
Q Consensus 237 ~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~l~~l~--~L~~ 313 (373)
+|++|++++|.++|.+| . +..+++|+.|++++|+++ .+|..+..+++ |++|++++|.++ .+|..+..++ +|++
T Consensus 331 ~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~ 406 (636)
T 4eco_A 331 KLGMLECLYNQLEGKLP-A-FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSA 406 (636)
T ss_dssp TCCEEECCSCCCEEECC-C-CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEE
T ss_pred CCCEEeCcCCcCccchh-h-hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCE
Confidence 99999999999998888 3 445566999999999998 78888899998 999999999998 6787776654 8999
Q ss_pred EeCcCCcCcccCchhhhccC----CCCccCEEECcCCcCcccCchhhhCCCCCCEEeCcCCCCC
Q 040379 314 LNISDNKLRGHFPELIQNLS----RFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLI 373 (373)
Q Consensus 314 L~L~~n~l~~~~p~~~~~l~----~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~lt 373 (373)
|++++|++++.+|..+.... .+++|++|++++|.+++.++..+..+++|++|++++|+++
T Consensus 407 L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp EECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred EECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence 99999999887776655111 3347888888888888655555566788888888888764
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.4e-39 Score=326.64 Aligned_cols=320 Identities=22% Similarity=0.298 Sum_probs=244.2
Q ss_pred CCCcHHHHHHHHHHhhcCCCCCCCCCCCCCCC--CCCCC--Ccc------------cceEecCCCCcEEEEEcCCCCCCC
Q 040379 31 IRCIDEEREALLTFKESLVDESGVLSSWGPED--EKRDC--CKW------------TGVGCSNRTGHVIKLEIQPIDFDS 94 (373)
Q Consensus 31 ~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~--~~~~~--c~w------------~~v~c~~~~~~v~~l~l~~~~l~~ 94 (373)
.++..+|+.||++||+++.+| +|.... ...++ |.| .||.|+. .++|+.|+++++
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~---- 333 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGF---- 333 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTT----
T ss_pred cccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccC----
Confidence 345678999999999999776 565321 02344 999 9999975 689999999986
Q ss_pred CCcceecCccccCCCCCCEEeC-CCCCCCCC-------------------------------------------------
Q 040379 95 FPLRGTISPALLQLHRLTYLDL-SLNNFSGS------------------------------------------------- 124 (373)
Q Consensus 95 ~~l~~~~~~~l~~l~~L~~L~l-~~n~l~~~------------------------------------------------- 124 (373)
++.|.+|+.++++++|++|++ ++|.+.|.
T Consensus 334 -~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~ 412 (876)
T 4ecn_A 334 -GAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP 412 (876)
T ss_dssp -CCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCT
T ss_pred -CCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCc
Confidence 899999999999999999999 66643221
Q ss_pred --------------------------CCccccCCCCCCCEEeCcCCcccc-----------------CcccccC--CCCC
Q 040379 125 --------------------------PIPEFIGSLTKLSYLDLSFAEFEG-----------------PIPSHLG--NLSA 159 (373)
Q Consensus 125 --------------------------~~~~~l~~l~~L~~L~L~~n~l~~-----------------~~p~~l~--~l~~ 159 (373)
.+|..++++++|++|+|++|.+++ .+|..++ ++++
T Consensus 413 ~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~ 492 (876)
T 4ecn_A 413 EMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKD 492 (876)
T ss_dssp TSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTT
T ss_pred cccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCC
Confidence 067788899999999999999997 3899888 9999
Q ss_pred CCEEEccCCCCCCCCCCcccCCCCCCCEEEccCcc-CCCCcchhhhh-------CCCCCCcEEEccCCCCCCCCcc--cc
Q 040379 160 LQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNN-LSRSTDWLQVV-------GNLPLLTTLYLYRCHLPPIVPL--SL 229 (373)
Q Consensus 160 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~-------~~l~~L~~L~l~~n~l~~~~~~--~~ 229 (373)
|++|++++|.+.. ..+..+.++++|++|++++|+ +++. .+|..+ ..+++|++|++++|.++ .+|. .+
T Consensus 493 L~~L~Ls~N~l~~-~iP~~l~~L~~L~~L~Ls~N~~lsg~-~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l 569 (876)
T 4ecn_A 493 LTDVELYNCPNMT-QLPDFLYDLPELQSLNIACNRGISAA-QLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASL 569 (876)
T ss_dssp CCEEEEESCTTCC-SCCGGGGGCSSCCEEECTTCTTSCHH-HHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHH
T ss_pred CCEEECcCCCCCc-cChHHHhCCCCCCEEECcCCCCcccc-cchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhh
Confidence 9999999999833 345678999999999999998 7650 134433 34559999999999998 6777 78
Q ss_pred cCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCC-CCEEEccCCcCcccccccccCC
Q 040379 230 SNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVS-VSFLGLASNEFEGGVPDFFGNM 308 (373)
Q Consensus 230 ~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~l~~l 308 (373)
+.+ ++|++|++++|.++ .+| .+..+++|+.|++++|.++ .+|..+..+++ |+.|++++|.++ .+|..+..+
T Consensus 570 ~~L---~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~ 641 (876)
T 4ecn_A 570 QKM---VKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAK 641 (876)
T ss_dssp TTC---TTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTT
T ss_pred hcC---CCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhcc
Confidence 888 88999999999988 777 3445566999999999988 78888888888 999999999888 677776665
Q ss_pred CC--CCeEeCcCCcCcccCchhhhccC--CCCccCEEECcCCcCcccCchhhhCCCCCCEEeCcCCCC
Q 040379 309 CS--LTMLNISDNKLRGHFPELIQNLS--RFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 372 (373)
Q Consensus 309 ~~--L~~L~L~~n~l~~~~p~~~~~l~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 372 (373)
+. |+.|++++|++++.+|.....+. .+++|+.|++++|.++..++..+..+++|+.|++++|+|
T Consensus 642 ~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L 709 (876)
T 4ecn_A 642 SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM 709 (876)
T ss_dssp CSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCC
T ss_pred ccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcC
Confidence 43 88888888888776554332222 223666777777766644333334566666666666665
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.7e-37 Score=308.32 Aligned_cols=267 Identities=32% Similarity=0.453 Sum_probs=184.2
Q ss_pred CcceecCccccC--CCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCC
Q 040379 96 PLRGTISPALLQ--LHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSA 173 (373)
Q Consensus 96 ~l~~~~~~~l~~--l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~ 173 (373)
.+.|.+|+.+.. +++|++|++++|.+++. +|..++.+++|++|++++|++++.+|..+..+++|++|++++|.+. .
T Consensus 379 ~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~-~ 456 (768)
T 3rgz_A 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGK-IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE-G 456 (768)
T ss_dssp EEEEECCTTTTCSTTCCCCEEECCSSEEEEE-CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCC-S
T ss_pred CcCCCcChhhhhcccCCccEEECCCCccccc-cCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCccc-C
Confidence 344444444443 45555555555555543 5555666666666666666666666666666666666666666662 1
Q ss_pred CCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCch
Q 040379 174 GNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIY 253 (373)
Q Consensus 174 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~ 253 (373)
..+..+..+++|++|++++|.+.+. ++..+..+++|++|++++|.+++.+|..++.+ ++|++|++++|.++|.+|
T Consensus 457 ~~p~~~~~l~~L~~L~L~~N~l~~~--~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l---~~L~~L~L~~N~l~~~~p 531 (768)
T 3rgz_A 457 EIPQELMYVKTLETLILDFNDLTGE--IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL---ENLAILKLSNNSFSGNIP 531 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSC--CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC---TTCCEEECCSSCCEEECC
T ss_pred cCCHHHcCCCCceEEEecCCcccCc--CCHHHhcCCCCCEEEccCCccCCcCChHHhcC---CCCCEEECCCCcccCcCC
Confidence 2334455666666666666666542 34556666666666666666666666666665 666666666666666665
Q ss_pred hHHHhccccCcEEEccCccccccccc------------------------------------------------------
Q 040379 254 PWLFNASSNLVLLGLDSNLLRGSIPV------------------------------------------------------ 279 (373)
Q Consensus 254 ~~~~~~~~~L~~L~l~~n~l~~~~~~------------------------------------------------------ 279 (373)
..+... ++|+.|++++|.++|.+|.
T Consensus 532 ~~l~~l-~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 610 (768)
T 3rgz_A 532 AELGDC-RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610 (768)
T ss_dssp GGGGGC-TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGT
T ss_pred HHHcCC-CCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccc
Confidence 554433 3366666666666555543
Q ss_pred ----------------cccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEEC
Q 040379 280 ----------------AFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYL 343 (373)
Q Consensus 280 ----------------~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L 343 (373)
.++.+++|+.|++++|+++|.+|..++.+++|++|+|++|+++|.+|..++.++ +|+.|+|
T Consensus 611 ~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~---~L~~LdL 687 (768)
T 3rgz_A 611 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR---GLNILDL 687 (768)
T ss_dssp CCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT---TCCEEEC
T ss_pred cccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCC---CCCEEEC
Confidence 344567889999999999999999999999999999999999999999888777 8999999
Q ss_pred cCCcCcccCchhhhCCCCCCEEeCcCCCCC
Q 040379 344 ENNRLNGFTNNSIGQMSKLRTLSLNGNSLI 373 (373)
Q Consensus 344 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~lt 373 (373)
++|+++|.+|..+.++++|++|++++|+++
T Consensus 688 s~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 688 SSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp CSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred CCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 999999999999999999999999999863
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3e-36 Score=285.86 Aligned_cols=298 Identities=24% Similarity=0.285 Sum_probs=189.4
Q ss_pred CCCCcccc--eEecCCC--------CcEEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCCccccCCCC
Q 040379 65 RDCCKWTG--VGCSNRT--------GHVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLT 134 (373)
Q Consensus 65 ~~~c~w~~--v~c~~~~--------~~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~ 134 (373)
...|.|.+ +.|+... .+++.++++++ .+.+..|..+.++++|++|++++|.+.+...+..+.+++
T Consensus 5 ~~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n-----~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~ 79 (455)
T 3v47_A 5 TSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLN-----SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79 (455)
T ss_dssp --CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSS-----CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCT
T ss_pred cceeEEEccccCcCCCCcccCCCCCCccCEEEecCC-----ccCcCChhHhccCccccEEECcCCcccceECcccccccc
Confidence 34455554 7776432 56888998886 777777888999999999999999887542456788999
Q ss_pred CCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCC-CCcccCCCCCCCEEEccCccCCCCcchhhh-hCCCCCCc
Q 040379 135 KLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAG-NLDWLSHLSSLTYLDLGSNNLSRSTDWLQV-VGNLPLLT 212 (373)
Q Consensus 135 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~l~~L~ 212 (373)
+|++|++++|.+++..|..+.++++|++|++++|.+.... ....+..+++|++|++++|.+.+.. +.. +..+++|+
T Consensus 80 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~l~~L~ 157 (455)
T 3v47_A 80 SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ--PASFFLNMRRFH 157 (455)
T ss_dssp TCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCC--CCGGGGGCTTCC
T ss_pred cCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccC--cccccCCCCccc
Confidence 9999999999998777888999999999999999983211 1123788999999999999988752 233 78889999
Q ss_pred EEEccCCCCCCCCcccccCC-------------------------------CCCCccCEEECCCCcCCCCchhHHHhc--
Q 040379 213 TLYLYRCHLPPIVPLSLSNL-------------------------------NYSTSLQFLELSENNLTNSIYPWLFNA-- 259 (373)
Q Consensus 213 ~L~l~~n~l~~~~~~~~~~l-------------------------------~~~~~L~~L~ls~n~l~~~~~~~~~~~-- 259 (373)
+|++++|.+.+..+..+..+ ..+++|++|++++|.+++.+|..+...
T Consensus 158 ~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~ 237 (455)
T 3v47_A 158 VLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIA 237 (455)
T ss_dssp EEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTT
T ss_pred EEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcccc
Confidence 99999998887776555432 122567777777777765554443322
Q ss_pred ------------------------------------cccCcEEEccCccccccccccccCCCCCCEEEccCCcCcccccc
Q 040379 260 ------------------------------------SSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPD 303 (373)
Q Consensus 260 ------------------------------------~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 303 (373)
.++|+.|++++|.+++..|..++.+++|++|++++|.+++..|.
T Consensus 238 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 317 (455)
T 3v47_A 238 GTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN 317 (455)
T ss_dssp TCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT
T ss_pred ccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChh
Confidence 02355555555555544444455555555555555555544444
Q ss_pred cccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCcccCchhhhCCCCCCEEeCcCCCC
Q 040379 304 FFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 372 (373)
Q Consensus 304 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 372 (373)
.+..+++|++|++++|++++..|..+..++ +|++|++++|.+++..|..+.++++|++|++++|++
T Consensus 318 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~---~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 383 (455)
T 3v47_A 318 AFWGLTHLLKLNLSQNFLGSIDSRMFENLD---KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383 (455)
T ss_dssp TTTTCTTCCEEECCSSCCCEECGGGGTTCT---TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred HhcCcccCCEEECCCCccCCcChhHhcCcc---cCCEEECCCCcccccChhhccccccccEEECCCCcc
Confidence 444445555555555544443333333222 444444444444444444444444444444444433
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.5e-34 Score=272.47 Aligned_cols=266 Identities=23% Similarity=0.242 Sum_probs=177.4
Q ss_pred CcceecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCC
Q 040379 96 PLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGN 175 (373)
Q Consensus 96 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~ 175 (373)
.+.+..|..|.++++|++|++++|.++.. .+..+.++++|++|++++|++.+..|..+..+++|++|++++|.+.. ..
T Consensus 67 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~ 144 (477)
T 2id5_A 67 IVSAVEPGAFNNLFNLRTLGLRSNRLKLI-PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY-IS 144 (477)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCSC-CTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCE-EC
T ss_pred ccCEeChhhhhCCccCCEEECCCCcCCcc-CcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccce-eC
Confidence 33333444444444555555544444432 22234444555555555555444444444455555555555554421 12
Q ss_pred CcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhH
Q 040379 176 LDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPW 255 (373)
Q Consensus 176 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~ 255 (373)
+..+..+++|++|++++|.+.+.+ +..+..+++|+.|++++|.+.+..+..+..+ ++|++|++++|...+.++..
T Consensus 145 ~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l---~~L~~L~l~~~~~~~~~~~~ 219 (477)
T 2id5_A 145 HRAFSGLNSLEQLTLEKCNLTSIP--TEALSHLHGLIVLRLRHLNINAIRDYSFKRL---YRLKVLEISHWPYLDTMTPN 219 (477)
T ss_dssp TTSSTTCTTCCEEEEESCCCSSCC--HHHHTTCTTCCEEEEESCCCCEECTTCSCSC---TTCCEEEEECCTTCCEECTT
T ss_pred hhhccCCCCCCEEECCCCcCcccC--hhHhcccCCCcEEeCCCCcCcEeChhhcccC---cccceeeCCCCccccccCcc
Confidence 224455556666666666555432 2445666666666666666666555555555 77777777777766666666
Q ss_pred HHhccccCcEEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCC
Q 040379 256 LFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRF 335 (373)
Q Consensus 256 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~ 335 (373)
.+... +|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..|..+..++
T Consensus 220 ~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-- 296 (477)
T 2id5_A 220 CLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLN-- 296 (477)
T ss_dssp TTTTC-CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCT--
T ss_pred cccCc-cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcc--
Confidence 55554 488999999988855456788899999999999999987788889999999999999999987777665544
Q ss_pred CccCEEECcCCcCcccCchhhhCCCCCCEEeCcCCCC
Q 040379 336 SSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 372 (373)
Q Consensus 336 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 372 (373)
+|+.|++++|.+++..+..+..+++|++|++++|++
T Consensus 297 -~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 297 -YLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp -TCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred -cCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 899999999999998888888899999999999986
No 8
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=7e-34 Score=269.52 Aligned_cols=282 Identities=20% Similarity=0.216 Sum_probs=230.0
Q ss_pred CcEEEEEcCCCCCCCCCcceec-CccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccc--cCC
Q 040379 80 GHVIKLEIQPIDFDSFPLRGTI-SPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSH--LGN 156 (373)
Q Consensus 80 ~~v~~l~l~~~~l~~~~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~--l~~ 156 (373)
.+++.++++++ .+.+.+ +..|..+++|++|++++|.+++. .|..++++++|++|++++|.+++.+|.. +..
T Consensus 54 ~~L~~L~L~~n-----~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 127 (455)
T 3v47_A 54 QDLQFLKVEQQ-----TPGLVIRNNTFRGLSSLIILKLDYNQFLQL-ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKP 127 (455)
T ss_dssp TTCCEEECCCC-----STTCEECTTTTTTCTTCCEEECTTCTTCEE-CTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTT
T ss_pred ccccEEECcCC-----cccceECcccccccccCCEEeCCCCccCcc-ChhhccCcccCCEEeCCCCCCCccccCcccccC
Confidence 56888888876 566555 45688999999999999999875 6888999999999999999998766655 889
Q ss_pred CCCCCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhh--------------------------------
Q 040379 157 LSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQV-------------------------------- 204 (373)
Q Consensus 157 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-------------------------------- 204 (373)
+++|++|++++|.+........+.++++|++|++++|.+.+... ..
T Consensus 128 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 205 (455)
T 3v47_A 128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE--EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205 (455)
T ss_dssp CTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT--TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHH
T ss_pred cccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh--hhhhccccccccccccccCcccccchhhcccccc
Confidence 99999999999999544333448889999999999998876421 22
Q ss_pred --hCCCCCCcEEEccCCCCCCCCcccccCCC------------------------------------CCCccCEEECCCC
Q 040379 205 --VGNLPLLTTLYLYRCHLPPIVPLSLSNLN------------------------------------YSTSLQFLELSEN 246 (373)
Q Consensus 205 --~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------------------------------------~~~~L~~L~ls~n 246 (373)
+..+++|++|++++|.+.+..|..+.... ..++|++|++++|
T Consensus 206 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n 285 (455)
T 3v47_A 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS 285 (455)
T ss_dssp CCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSS
T ss_pred ccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCc
Confidence 22447789999999887654443321100 1258999999999
Q ss_pred cCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCc
Q 040379 247 NLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFP 326 (373)
Q Consensus 247 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p 326 (373)
.+.+..|.. +..+++|+.|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|
T Consensus 286 ~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 364 (455)
T 3v47_A 286 KIFALLKSV-FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD 364 (455)
T ss_dssp CCCEECTTT-TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECT
T ss_pred cccccchhh-cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccCh
Confidence 998655544 4555669999999999998889899999999999999999998888999999999999999999998878
Q ss_pred hhhhccCCCCccCEEECcCCcCcccCchhhhCCCCCCEEeCcCCCCC
Q 040379 327 ELIQNLSRFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLI 373 (373)
Q Consensus 327 ~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~lt 373 (373)
..+..++ +|++|++++|++++.++..+..+++|++|++++|+++
T Consensus 365 ~~~~~l~---~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 365 QSFLGLP---NLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp TTTTTCT---TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hhccccc---cccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 7766555 9999999999999988878899999999999999875
No 9
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=5.8e-35 Score=264.77 Aligned_cols=282 Identities=17% Similarity=0.210 Sum_probs=151.8
Q ss_pred CCCcHHHHHHHHHHhhcCC-CCCCCCCCCCCC-CCCCCCCcccceEecC--------CCCcEEEEEcCCCCCCCCCccee
Q 040379 31 IRCIDEEREALLTFKESLV-DESGVLSSWGPE-DEKRDCCKWTGVGCSN--------RTGHVIKLEIQPIDFDSFPLRGT 100 (373)
Q Consensus 31 ~~~~~~~~~~l~~~~~~~~-~~~~~~~~w~~~-~~~~~~c~w~~v~c~~--------~~~~v~~l~l~~~~l~~~~l~~~ 100 (373)
..+..+|+.+|++||+.+. ++.++...|... ....++|.|.|+.|.. ...+++.++++++ .+. .
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n-----~l~-~ 95 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV-----PLP-Q 95 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESS-----CCS-S
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCC-----Cch-h
Confidence 3466789999999999884 666666788310 1467899999999952 1234445555443 222 3
Q ss_pred cCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccC
Q 040379 101 ISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLS 180 (373)
Q Consensus 101 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~ 180 (373)
+|+.++++++|++|++++|.++ .+|..++++++|++|++++|.++ .+|..+.++++|++|++++|++.... +..+.
T Consensus 96 lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~-p~~~~ 171 (328)
T 4fcg_A 96 FPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTEL-PEPLA 171 (328)
T ss_dssp CCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCC-CSCSE
T ss_pred cChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCcccc-ChhHh
Confidence 4444444555555555555544 24444444555555555555544 44444444555555555444431111 11110
Q ss_pred CCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhcc
Q 040379 181 HLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNAS 260 (373)
Q Consensus 181 ~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~ 260 (373)
. . .+...+..+++|++|++++|.++ .+|..+..+ ++|++|++++|.++ .+|+.+ ..+
T Consensus 172 ~------~-----------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l---~~L~~L~L~~N~l~-~l~~~l-~~l 228 (328)
T 4fcg_A 172 S------T-----------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANL---QNLKSLKIRNSPLS-ALGPAI-HHL 228 (328)
T ss_dssp E------E-----------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGC---TTCCEEEEESSCCC-CCCGGG-GGC
T ss_pred h------c-----------cchhhhccCCCCCEEECcCCCcC-cchHhhcCC---CCCCEEEccCCCCC-cCchhh-ccC
Confidence 0 0 00011233555555555555555 344455555 55666666666555 244332 223
Q ss_pred ccCcEEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCE
Q 040379 261 SNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKE 340 (373)
Q Consensus 261 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~ 340 (373)
++|+.|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|+.+..++ +|+.
T Consensus 229 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~---~L~~ 305 (328)
T 4fcg_A 229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP---ANCI 305 (328)
T ss_dssp TTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSC---TTCE
T ss_pred CCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhcc---CceE
Confidence 3356666666555555565566666666666666666656666666666666666666666666666555554 5666
Q ss_pred EECcCCcC
Q 040379 341 LYLENNRL 348 (373)
Q Consensus 341 L~L~~n~l 348 (373)
+++..+.+
T Consensus 306 l~l~~~~~ 313 (328)
T 4fcg_A 306 ILVPPHLQ 313 (328)
T ss_dssp EECCGGGS
T ss_pred EeCCHHHH
Confidence 66555444
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.3e-33 Score=274.26 Aligned_cols=278 Identities=22% Similarity=0.238 Sum_probs=169.6
Q ss_pred cEEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCC
Q 040379 81 HVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSAL 160 (373)
Q Consensus 81 ~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 160 (373)
.++.++++++ .+.+..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..+..+++|
T Consensus 255 ~L~~L~l~~n-----~l~~~~~~~~~~l~~L~~L~l~~n~l~--~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 327 (606)
T 3t6q_A 255 SVESINLQKH-----YFFNISSNTFHCFSGLQELDLTATHLS--ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL 327 (606)
T ss_dssp EEEEEECTTC-----CCSSCCTTTTTTCTTCSEEECTTSCCS--CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTC
T ss_pred ceeEEEeecC-----ccCccCHHHhccccCCCEEeccCCccC--CCChhhcccccCCEEECccCCcCcCchhhhhccCcC
Confidence 6778888776 556555666888888888888888887 477788888888888888888887667778888888
Q ss_pred CEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCE
Q 040379 161 QHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQF 240 (373)
Q Consensus 161 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~ 240 (373)
++|++++|.+........+..+++|++|++++|.+.+....+..+..+++|++|++++|.+.+..|..+..+ ++|++
T Consensus 328 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~ 404 (606)
T 3t6q_A 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC---PQLEL 404 (606)
T ss_dssp SEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTC---TTCSE
T ss_pred CEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCC---ccCCe
Confidence 888888887743333345677777888888877776543224556667777777777776666555555555 55666
Q ss_pred EECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEEEccCCcCccc---ccccccCCCCCCeEeCc
Q 040379 241 LELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGG---VPDFFGNMCSLTMLNIS 317 (373)
Q Consensus 241 L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~---~~~~l~~l~~L~~L~L~ 317 (373)
|++++|.+.+..+...+..+++|+.|++++|.+++..|..+..+++|++|++++|.+++. .+..+..+++|++|+++
T Consensus 405 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls 484 (606)
T 3t6q_A 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484 (606)
T ss_dssp EECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECT
T ss_pred EECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECC
Confidence 666666555444443333444455555555555544455555555555555555555431 11334444555555555
Q ss_pred CCcCcccCchhhhccCCCCccCEEECcCCcCcccCchhhhCCCCCCEEeCcCCCC
Q 040379 318 DNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 372 (373)
Q Consensus 318 ~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 372 (373)
+|++++..|..+..++ +|++|++++|++++..|..+.++++| .|++++|++
T Consensus 485 ~n~l~~~~~~~~~~l~---~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l 535 (606)
T 3t6q_A 485 FCDLSSIDQHAFTSLK---MMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHI 535 (606)
T ss_dssp TSCCCEECTTTTTTCT---TCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCC
T ss_pred CCccCccChhhhcccc---CCCEEECCCCccCcCChhHhCccccc-EEECcCCcc
Confidence 5555444443333222 44444444444444444444444444 444444443
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.3e-32 Score=268.31 Aligned_cols=135 Identities=22% Similarity=0.261 Sum_probs=93.8
Q ss_pred CccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEEEccCCcCcc-cccccccCCCCCCeE
Q 040379 236 TSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEG-GVPDFFGNMCSLTML 314 (373)
Q Consensus 236 ~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L 314 (373)
++|++|++++|.+.+..+...+..+++|+.|++++|.+++..|..+..+++|++|++++|.+++ .+|..+..+++|++|
T Consensus 399 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 478 (606)
T 3vq2_A 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL 478 (606)
T ss_dssp TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEE
Confidence 5566666666666544443344445557777777777776677777777777777777777776 356677777777777
Q ss_pred eCcCCcCcccCchhhhccCCCCccCEEECcCCcCcccCchhhhCCCCCCEEeCcCCCCC
Q 040379 315 NISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLI 373 (373)
Q Consensus 315 ~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~lt 373 (373)
++++|++++..|..+..++ +|++|++++|++++..|..+.++++|++|++++|+|+
T Consensus 479 ~Ls~n~l~~~~~~~~~~l~---~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 479 DLSKCQLEQISWGVFDTLH---RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp ECTTSCCCEECTTTTTTCT---TCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred ECCCCcCCccChhhhcccc---cCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 7777777766666554444 7777777777777777777777777777777777764
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5e-33 Score=269.85 Aligned_cols=169 Identities=23% Similarity=0.226 Sum_probs=136.5
Q ss_pred CCcccceEecCC-----------CCcEEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCC
Q 040379 67 CCKWTGVGCSNR-----------TGHVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTK 135 (373)
Q Consensus 67 ~c~w~~v~c~~~-----------~~~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~ 135 (373)
.|.|.++ |+.. ...++.++++++ .+.+..|..+..+++|++|++++|.+++. .|..++.+++
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n-----~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~ 75 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFN-----KITYIGHGDLRACANLQVLILKSSRINTI-EGDAFYSLGS 75 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSS-----CCCEECSSTTSSCTTCCEEECTTSCCCEE-CTTTTTTCTT
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCC-----ccCccChhhhhcCCcccEEECCCCCcCcc-Chhhcccccc
Confidence 3777777 6532 236888888886 77877888999999999999999999975 6788999999
Q ss_pred CCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchh-hhhCCCCCCcEE
Q 040379 136 LSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWL-QVVGNLPLLTTL 214 (373)
Q Consensus 136 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~l~~L~~L 214 (373)
|++|++++|.+++..|..++++++|++|++++|.+.....+..+.++++|++|++++|.+.+. ++ ..+..+++|++|
T Consensus 76 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~--~~~~~~~~l~~L~~L 153 (549)
T 2z81_A 76 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE--IRRIDFAGLTSLNEL 153 (549)
T ss_dssp CCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE--ECTTTTTTCCEEEEE
T ss_pred CCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccc--cCHhhhhcccccCee
Confidence 999999999999777777999999999999999995545566789999999999999984332 22 578899999999
Q ss_pred EccCCCCCCCCcccccCCCCCCccCEEECCCCc
Q 040379 215 YLYRCHLPPIVPLSLSNLNYSTSLQFLELSENN 247 (373)
Q Consensus 215 ~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~ 247 (373)
++++|.+++..|..++.+ ++|++|++++|.
T Consensus 154 ~L~~n~l~~~~~~~l~~l---~~L~~L~l~~n~ 183 (549)
T 2z81_A 154 EIKALSLRNYQSQSLKSI---RDIHHLTLHLSE 183 (549)
T ss_dssp EEEETTCCEECTTTTTTC---SEEEEEEEECSB
T ss_pred eccCCcccccChhhhhcc---ccCceEecccCc
Confidence 999999998888777765 444444444433
No 13
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.8e-32 Score=253.41 Aligned_cols=272 Identities=21% Similarity=0.224 Sum_probs=182.8
Q ss_pred cEEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCC
Q 040379 81 HVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSAL 160 (373)
Q Consensus 81 ~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 160 (373)
.++.++++++ .+....+..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..|..+.++++|
T Consensus 46 ~l~~l~l~~~-----~l~~l~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 46 NQKIVTFKNS-----TMRKLPAALLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp CCSEEEEESC-----EESEECTHHHHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CceEEEecCC-----chhhCChhHhcccccCcEEECCCCccccc-ChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 3455555553 44333333467788888888888888764 45577788888888888888886666777888888
Q ss_pred CEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCC-------
Q 040379 161 QHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLN------- 233 (373)
Q Consensus 161 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------- 233 (373)
++|++++|.+.. .....+.++++|++|++++|.+.+.. +..+..+++|++|++++|.+++.....+..+.
T Consensus 120 ~~L~L~~n~l~~-l~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 120 TVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIE--DDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYN 196 (390)
T ss_dssp CEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCBCC--TTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSS
T ss_pred CEEECCCCccCc-CCHHHhcCCCCCcEEECCCCccCccC--hhhccCCCCCCEEECCCCcCCccccccccccceeecccc
Confidence 888888888732 22234577888888888888877642 35677788888888888877654332222220
Q ss_pred ---------------------------CCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCC
Q 040379 234 ---------------------------YSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVS 286 (373)
Q Consensus 234 ---------------------------~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~ 286 (373)
..++|++|++++|.+++. + .+...++|+.|++++|.+++..|..+..+++
T Consensus 197 ~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 273 (390)
T 3o6n_A 197 LLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--A-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 273 (390)
T ss_dssp CCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSCCCEEESGGGTTCSS
T ss_pred cccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--H-HHcCCCCccEEECCCCcCCCcChhHcccccc
Confidence 113456666666666532 2 2334455777777777777766777777777
Q ss_pred CCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCcccCchhhhCCCCCCEEe
Q 040379 287 VSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQMSKLRTLS 366 (373)
Q Consensus 287 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 366 (373)
|++|++++|++++ +|..+..+++|++|++++|+++ .+|..+..++ +|++|++++|++++.. +..+++|+.|+
T Consensus 274 L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~---~L~~L~L~~N~i~~~~---~~~~~~L~~L~ 345 (390)
T 3o6n_A 274 LERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD---RLENLYLDHNSIVTLK---LSTHHTLKNLT 345 (390)
T ss_dssp CCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHT---TCSEEECCSSCCCCCC---CCTTCCCSEEE
T ss_pred CCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccC---cCCEEECCCCccceeC---chhhccCCEEE
Confidence 7777777777774 4555566777888888887777 4555555555 7788888888776653 45677888888
Q ss_pred CcCCCC
Q 040379 367 LNGNSL 372 (373)
Q Consensus 367 l~~n~l 372 (373)
+++|++
T Consensus 346 l~~N~~ 351 (390)
T 3o6n_A 346 LSHNDW 351 (390)
T ss_dssp CCSSCE
T ss_pred cCCCCc
Confidence 888775
No 14
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=8.2e-33 Score=263.75 Aligned_cols=278 Identities=21% Similarity=0.215 Sum_probs=239.7
Q ss_pred CcEEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCC
Q 040379 80 GHVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSA 159 (373)
Q Consensus 80 ~~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 159 (373)
..++.|+++++ .+.+..+..|..+++|++|++++|.+++. .|..+.++++|++|++++|++++..+..+.++++
T Consensus 32 ~~l~~L~L~~n-----~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 105 (477)
T 2id5_A 32 TETRLLDLGKN-----RIKTLNQDEFASFPHLEELELNENIVSAV-EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN 105 (477)
T ss_dssp TTCSEEECCSS-----CCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTT
T ss_pred CCCcEEECCCC-----ccceECHhHccCCCCCCEEECCCCccCEe-ChhhhhCCccCCEEECCCCcCCccCcccccCCCC
Confidence 36778888876 77777788999999999999999999875 6888999999999999999999655556889999
Q ss_pred CCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccC
Q 040379 160 LQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQ 239 (373)
Q Consensus 160 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~ 239 (373)
|++|++++|.+.. ..+..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+++..+..+..+ ++|+
T Consensus 106 L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l---~~L~ 179 (477)
T 2id5_A 106 LTKLDISENKIVI-LLDYMFQDLYNLKSLEVGDNDLVYI--SHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL---HGLI 179 (477)
T ss_dssp CCEEECTTSCCCE-ECTTTTTTCTTCCEEEECCTTCCEE--CTTSSTTCTTCCEEEEESCCCSSCCHHHHTTC---TTCC
T ss_pred CCEEECCCCcccc-CChhHccccccCCEEECCCCcccee--ChhhccCCCCCCEEECCCCcCcccChhHhccc---CCCc
Confidence 9999999999933 3345688999999999999998874 24678899999999999999998777778888 9999
Q ss_pred EEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCC
Q 040379 240 FLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDN 319 (373)
Q Consensus 240 ~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 319 (373)
.|++++|.+.+ ++...+..+++|+.|++++|...+.+|.......+|++|++++|.+++..+..+..+++|++|++++|
T Consensus 180 ~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 258 (477)
T 2id5_A 180 VLRLRHLNINA-IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258 (477)
T ss_dssp EEEEESCCCCE-ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS
T ss_pred EEeCCCCcCcE-eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCC
Confidence 99999999984 45545556677999999999988888877777779999999999999665578899999999999999
Q ss_pred cCcccCchhhhccCCCCccCEEECcCCcCcccCchhhhCCCCCCEEeCcCCCCC
Q 040379 320 KLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLI 373 (373)
Q Consensus 320 ~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~lt 373 (373)
++++..+..+.. +++|+.|++++|.+++..+..+.++++|+.|++++|+|+
T Consensus 259 ~l~~~~~~~~~~---l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 309 (477)
T 2id5_A 259 PISTIEGSMLHE---LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309 (477)
T ss_dssp CCCEECTTSCTT---CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS
T ss_pred cCCccChhhccc---cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc
Confidence 999766655544 459999999999999999999999999999999999875
No 15
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=9.7e-32 Score=244.12 Aligned_cols=289 Identities=19% Similarity=0.201 Sum_probs=221.9
Q ss_pred CCCCcccceEecCC---------CCcEEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCC
Q 040379 65 RDCCKWTGVGCSNR---------TGHVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTK 135 (373)
Q Consensus 65 ~~~c~w~~v~c~~~---------~~~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~ 135 (373)
...|.|..+.|... ...++.++++++ .+.+..+..+.++++|++|++++|.+++. .|..++.+++
T Consensus 28 ~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n-----~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~ 101 (330)
T 1xku_A 28 RCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNN-----KITEIKDGDFKNLKNLHTLILINNKISKI-SPGAFAPLVK 101 (330)
T ss_dssp TCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSS-----CCCCBCTTTTTTCTTCCEEECCSSCCCCB-CTTTTTTCTT
T ss_pred CCcCCCeEEEecCCCccccCccCCCCCeEEECCCC-----cCCEeChhhhccCCCCCEEECCCCcCCee-CHHHhcCCCC
Confidence 34578888888642 235677777775 66666666788899999999999999875 6888889999
Q ss_pred CCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEE
Q 040379 136 LSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLY 215 (373)
Q Consensus 136 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~ 215 (373)
|++|++++|.++ .+|..+. ++|++|++++|.+. ......+.++++|++|++++|.+......+..+..+++|++|+
T Consensus 102 L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ 177 (330)
T 1xku_A 102 LERLYLSKNQLK-ELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177 (330)
T ss_dssp CCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEE
T ss_pred CCEEECCCCcCC-ccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEE
Confidence 999999999888 5676554 78999999999883 2233457889999999999998865333456788899999999
Q ss_pred ccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEEEccCC
Q 040379 216 LYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASN 295 (373)
Q Consensus 216 l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 295 (373)
+++|.++. +|..+. ++|++|++++|.+++..+.. +..+++|+.|++++|.+++..+..+..+++|++|++++|
T Consensus 178 l~~n~l~~-l~~~~~-----~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 250 (330)
T 1xku_A 178 IADTNITT-IPQGLP-----PSLTELHLDGNKITKVDAAS-LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250 (330)
T ss_dssp CCSSCCCS-CCSSCC-----TTCSEEECTTSCCCEECTGG-GTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS
T ss_pred CCCCcccc-CCcccc-----ccCCEEECCCCcCCccCHHH-hcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC
Confidence 99998876 343322 68999999999988544444 445566999999999998777778888999999999999
Q ss_pred cCcccccccccCCCCCCeEeCcCCcCcccCchhhhcc---CCCCccCEEECcCCcCcc--cCchhhhCCCCCCEEeCcCC
Q 040379 296 EFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNL---SRFSSLKELYLENNRLNG--FTNNSIGQMSKLRTLSLNGN 370 (373)
Q Consensus 296 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l---~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n 370 (373)
+++ .+|..+..+++|++|++++|++++..+..+... ...+.|+.|++++|++.. ..|..+..+++++.+++++|
T Consensus 251 ~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 251 KLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 998 678888889999999999999986555554322 123578899999998864 55677888899999999988
Q ss_pred C
Q 040379 371 S 371 (373)
Q Consensus 371 ~ 371 (373)
+
T Consensus 330 ~ 330 (330)
T 1xku_A 330 K 330 (330)
T ss_dssp -
T ss_pred C
Confidence 5
No 16
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=4.2e-32 Score=246.71 Aligned_cols=286 Identities=20% Similarity=0.194 Sum_probs=225.9
Q ss_pred CCcccceEecCCC---------CcEEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCC
Q 040379 67 CCKWTGVGCSNRT---------GHVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLS 137 (373)
Q Consensus 67 ~c~w~~v~c~~~~---------~~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~ 137 (373)
.|.|..+.|.... ..++.++++++ .+.+..+..+.++++|++|++++|.+++. .|..++++++|+
T Consensus 32 ~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n-----~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~ 105 (332)
T 2ft3_A 32 HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNN-----DISELRKDDFKGLQHLYALVLVNNKISKI-HEKAFSPLRKLQ 105 (332)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSS-----CCCEECTTTTTTCTTCCEEECCSSCCCEE-CGGGSTTCTTCC
T ss_pred cccCCEEECCCCCccccCCCCCCCCeEEECCCC-----cCCccCHhHhhCCCCCcEEECCCCccCcc-CHhHhhCcCCCC
Confidence 4789999886421 36777888775 67766677899999999999999999875 688899999999
Q ss_pred EEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEcc
Q 040379 138 YLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLY 217 (373)
Q Consensus 138 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~ 217 (373)
+|++++|.++ .+|..+. ++|++|++++|.+.. .....+..+++|++|++++|.+......+..+..+ +|++|+++
T Consensus 106 ~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 106 KLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS 180 (332)
T ss_dssp EEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCC-CCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred EEECCCCcCC-ccCcccc--ccCCEEECCCCccCc-cCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence 9999999998 6776655 889999999999842 33345888999999999999886432344566666 89999999
Q ss_pred CCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEEEccCCcC
Q 040379 218 RCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEF 297 (373)
Q Consensus 218 ~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 297 (373)
+|.+++ +|..+. ++|++|++++|.+++..+.. +..+++|+.|++++|.+++..+..+..+++|++|++++|++
T Consensus 181 ~n~l~~-l~~~~~-----~~L~~L~l~~n~i~~~~~~~-l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 253 (332)
T 2ft3_A 181 EAKLTG-IPKDLP-----ETLNELHLDHNKIQAIELED-LLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL 253 (332)
T ss_dssp SSBCSS-CCSSSC-----SSCSCCBCCSSCCCCCCTTS-STTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC
T ss_pred CCCCCc-cCcccc-----CCCCEEECCCCcCCccCHHH-hcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC
Confidence 999887 443332 68999999999998544444 44456699999999999987777899999999999999999
Q ss_pred cccccccccCCCCCCeEeCcCCcCcccCchhhhccC---CCCccCEEECcCCcCc--ccCchhhhCCCCCCEEeCcCCC
Q 040379 298 EGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLS---RFSSLKELYLENNRLN--GFTNNSIGQMSKLRTLSLNGNS 371 (373)
Q Consensus 298 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~---~~~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l~~n~ 371 (373)
+ .+|..+..+++|++|++++|++++..+..+.... ..++|+.|++++|++. +..+..+..+++|+.+++++|+
T Consensus 254 ~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 254 S-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp C-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred e-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 8 6888889999999999999999976555554321 2457999999999987 6677788899999999999985
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=9.1e-32 Score=263.22 Aligned_cols=262 Identities=22% Similarity=0.248 Sum_probs=183.1
Q ss_pred CcceecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCC
Q 040379 96 PLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGN 175 (373)
Q Consensus 96 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~ 175 (373)
.+....+..+..+++|++|++++|.+++. .+..++.+++|++|++++|.+++..|..++++++|++|++++|.+. ..+
T Consensus 62 ~l~~lp~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~ 139 (597)
T 3oja_B 62 TMRKLPAALLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLP 139 (597)
T ss_dssp EESEECTHHHHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCC
T ss_pred CCCCcCHHHHccCCCCcEEECCCCCCCCC-ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCC
Confidence 44444344567788888888888888864 5567888888888888888888777777788888888888888883 222
Q ss_pred CcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCC----------------------
Q 040379 176 LDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLN---------------------- 233 (373)
Q Consensus 176 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---------------------- 233 (373)
...+..+++|++|++++|.+.+. .+..++.+++|++|++++|.+++.....+..+.
T Consensus 140 ~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ 217 (597)
T 3oja_B 140 RGIFHNTPKLTTLSMSNNNLERI--EDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELD 217 (597)
T ss_dssp TTTTTTCTTCCEEECCSSCCCBC--CTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEE
T ss_pred HHHhccCCCCCEEEeeCCcCCCC--ChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheee
Confidence 33467888888888888888764 335677888888888888887765433322221
Q ss_pred ------------CCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEEEccCCcCcccc
Q 040379 234 ------------YSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGV 301 (373)
Q Consensus 234 ------------~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 301 (373)
..++|+.|++++|.+++. .. +..+++|+.|++++|.+++..|..++.+++|+.|+|++|.+++ +
T Consensus 218 ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~--~~-l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l 293 (597)
T 3oja_B 218 ASHNSINVVRGPVNVELTILKLQHNNLTDT--AW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-L 293 (597)
T ss_dssp CCSSCCCEEECSCCSCCCEEECCSSCCCCC--GG-GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-E
T ss_pred ccCCcccccccccCCCCCEEECCCCCCCCC--hh-hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-C
Confidence 013455566666665542 22 3344557777777777777777777777778888887777775 4
Q ss_pred cccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCcccCchhhhCCCCCCEEeCcCCCC
Q 040379 302 PDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 372 (373)
Q Consensus 302 ~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 372 (373)
|..+..+++|++|+|++|.++ .+|..+..++ +|+.|++++|.+++.. +..+++|+.|++++|++
T Consensus 294 ~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~---~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 294 NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD---RLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHT---TCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCE
T ss_pred CcccccCCCCcEEECCCCCCC-ccCcccccCC---CCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCC
Confidence 555666777888888887777 5666665555 7788888888777653 45677888888888775
No 18
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.6e-32 Score=264.21 Aligned_cols=278 Identities=23% Similarity=0.189 Sum_probs=179.8
Q ss_pred CcEEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCC
Q 040379 80 GHVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSA 159 (373)
Q Consensus 80 ~~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 159 (373)
..++.++++++ .+++..|..|.++++|++|++++|.+.+. .|..++++++|++|++++|++++..|..++++++
T Consensus 33 ~~l~~L~Ls~n-----~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 106 (606)
T 3t6q_A 33 NSTECLEFSFN-----VLPTIQNTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA 106 (606)
T ss_dssp TTCCEEECTTC-----CCSEECTTTSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTT
T ss_pred CcCcEEEccCC-----ccCcCChhHhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCcccccChhhhccccc
Confidence 46788888876 77777788899999999999999988875 6788889999999999999998777888889999
Q ss_pred CCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccC
Q 040379 160 LQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQ 239 (373)
Q Consensus 160 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~ 239 (373)
|++|++++|.+... .+..+.++++|++|++++|.+.+.. . ..+..+++|++|++++|.+++..+..++.+ ++|+
T Consensus 107 L~~L~L~~n~i~~l-~~~~~~~l~~L~~L~L~~n~l~~~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~ 180 (606)
T 3t6q_A 107 LKHLFFIQTGISSI-DFIPLHNQKTLESLYLGSNHISSIK-L-PKGFPTEKLKVLDFQNNAIHYLSKEDMSSL---QQAT 180 (606)
T ss_dssp CCEEECTTSCCSCG-GGSCCTTCTTCCEEECCSSCCCCCC-C-CTTCCCTTCCEEECCSSCCCEECHHHHHTT---TTCC
T ss_pred ccEeeccccCcccC-CcchhccCCcccEEECCCCcccccC-c-ccccCCcccCEEEcccCcccccChhhhhhh---cccc
Confidence 99999999988432 2345788888888888888887642 1 233347888888888888877666666666 5565
Q ss_pred --EEECCCCcCCCCch----------------------------------------------------------------
Q 040379 240 --FLELSENNLTNSIY---------------------------------------------------------------- 253 (373)
Q Consensus 240 --~L~ls~n~l~~~~~---------------------------------------------------------------- 253 (373)
.|++++|.+.+..|
T Consensus 181 ~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~ 260 (606)
T 3t6q_A 181 NLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN 260 (606)
T ss_dssp SEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEE
T ss_pred eeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEE
Confidence 66666666553222
Q ss_pred ----------hHHHhccccCcEEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcc
Q 040379 254 ----------PWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRG 323 (373)
Q Consensus 254 ----------~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 323 (373)
+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+
T Consensus 261 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 339 (606)
T 3t6q_A 261 LQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL 339 (606)
T ss_dssp CTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCC
T ss_pred eecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccc
Confidence 111222333444444444444 344444444555555555555544444444445555555555554444
Q ss_pred cCchhhhccCCCCccCEEECcCCcCcccC--chhhhCCCCCCEEeCcCCCC
Q 040379 324 HFPELIQNLSRFSSLKELYLENNRLNGFT--NNSIGQMSKLRTLSLNGNSL 372 (373)
Q Consensus 324 ~~p~~~~~l~~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l 372 (373)
.+|.. .+..+++|++|++++|.+++.. +..+..+++|++|++++|++
T Consensus 340 ~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 388 (606)
T 3t6q_A 340 ELGTG--CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP 388 (606)
T ss_dssp BCCSS--TTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSC
T ss_pred ccchh--hhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcC
Confidence 33321 1223335666666666665544 44555666666666666654
No 19
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.1e-32 Score=275.71 Aligned_cols=295 Identities=23% Similarity=0.228 Sum_probs=224.4
Q ss_pred CcccceEecCCCCcEEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccc
Q 040379 68 CKWTGVGCSNRTGHVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFE 147 (373)
Q Consensus 68 c~w~~v~c~~~~~~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~ 147 (373)
|.|..|.+ ...+++.|+++.+ .+++..|..|.++++|++|++++|...+...|..++++++|++|++++|.+.
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N-----~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~ 86 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFN-----YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY 86 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESC-----CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC
T ss_pred CCCCCCCC--CCCCcCEEECCCC-----cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc
Confidence 44555554 3467888888876 6677777778888888888888886554323667788888888888888888
Q ss_pred cCcccccCCCCCCCEEEccCCCCCCCCC-CcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCc
Q 040379 148 GPIPSHLGNLSALQHLDLSLNHLFSAGN-LDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVP 226 (373)
Q Consensus 148 ~~~p~~l~~l~~L~~L~L~~n~~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 226 (373)
+..|..+.++++|++|++++|.+..... ...+.++++|++|++++|.+.+.. .+..++++++|++|++++|.+++..+
T Consensus 87 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~-~~~~~~~L~~L~~L~Ls~N~i~~~~~ 165 (844)
T 3j0a_A 87 FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY-LHPSFGKLNSLKSIDFSSNQIFLVCE 165 (844)
T ss_dssp EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC-CCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred ccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccc-cchhHhhCCCCCEEECCCCcCCeeCH
Confidence 7777888888888888888888743222 124777888888888888877642 23467788888888888887776555
Q ss_pred ccccCC-----------------------CCCC------ccCEEECCCCcCCCCchhHHHhc------------------
Q 040379 227 LSLSNL-----------------------NYST------SLQFLELSENNLTNSIYPWLFNA------------------ 259 (373)
Q Consensus 227 ~~~~~l-----------------------~~~~------~L~~L~ls~n~l~~~~~~~~~~~------------------ 259 (373)
..+..+ ..++ .|++|++++|.+++.++..+...
T Consensus 166 ~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~ 245 (844)
T 3j0a_A 166 HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245 (844)
T ss_dssp GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC
T ss_pred HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc
Confidence 443321 0112 38899999998776655444322
Q ss_pred -------------------cccCcEEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCc
Q 040379 260 -------------------SSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNK 320 (373)
Q Consensus 260 -------------------~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 320 (373)
.++++.|++++|.+.+..|..+..+++|+.|++++|++++..|..+..+++|++|++++|+
T Consensus 246 ~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~ 325 (844)
T 3j0a_A 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325 (844)
T ss_dssp SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC
T ss_pred cccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC
Confidence 2468999999999998888889999999999999999998888889999999999999999
Q ss_pred CcccCchhhhccCCCCccCEEECcCCcCcccCchhhhCCCCCCEEeCcCCCCC
Q 040379 321 LRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLI 373 (373)
Q Consensus 321 l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~lt 373 (373)
+++..|..+..++ +|+.|++++|.+.+..+..+..+++|+.|++++|.++
T Consensus 326 l~~~~~~~~~~l~---~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 326 LGELYSSNFYGLP---KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp CSCCCSCSCSSCT---TCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred CCccCHHHhcCCC---CCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence 9877676665554 8999999999998888888889999999999999874
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.7e-32 Score=269.99 Aligned_cols=246 Identities=20% Similarity=0.291 Sum_probs=165.7
Q ss_pred CCCCEEeCCCCCCCCCCCcc--ccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCC-C
Q 040379 109 HRLTYLDLSLNNFSGSPIPE--FIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSS-L 185 (373)
Q Consensus 109 ~~L~~L~l~~n~l~~~~~~~--~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~-L 185 (373)
++|++|++++|.++ .+|. .++.+++|++|++++|+++|.+| .+..+++|++|++++|.+. ..+..+..+++ |
T Consensus 305 ~~L~~L~L~~n~l~--~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L 379 (636)
T 4eco_A 305 EKIQIIYIGYNNLK--TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT--EIPANFCGFTEQV 379 (636)
T ss_dssp GTCCEEECCSSCCS--SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE--ECCTTSEEECTTC
T ss_pred CCCCEEECCCCcCC--ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc--cccHhhhhhcccC
Confidence 44555555555444 2444 55555566666666666555555 5555555666666655552 33344666777 8
Q ss_pred CEEEccCccCCCCcchhhhhCCC--CCCcEEEccCCCCCCCCccccc-------CCCCCCccCEEECCCCcCCCCchhHH
Q 040379 186 TYLDLGSNNLSRSTDWLQVVGNL--PLLTTLYLYRCHLPPIVPLSLS-------NLNYSTSLQFLELSENNLTNSIYPWL 256 (373)
Q Consensus 186 ~~L~l~~n~~~~~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~-------~l~~~~~L~~L~ls~n~l~~~~~~~~ 256 (373)
++|++++|.+.. ++..+..+ ++|++|++++|.+.+..|..+. .+ ++|++|++++|.++ .+|..+
T Consensus 380 ~~L~Ls~N~l~~---lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~---~~L~~L~Ls~N~l~-~lp~~~ 452 (636)
T 4eco_A 380 ENLSFAHNKLKY---IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG---INVSSINLSNNQIS-KFPKEL 452 (636)
T ss_dssp CEEECCSSCCSS---CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC---CCEEEEECCSSCCC-SCCTHH
T ss_pred cEEEccCCcCcc---cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccC---CCCCEEECcCCccC-cCCHHH
Confidence 888888888774 33445543 3788888888888887777666 44 68888888888887 677777
Q ss_pred HhccccCcEEEccCccccccccccc-cCC-------CCCCEEEccCCcCccccccccc--CCCCCCeEeCcCCcCcccCc
Q 040379 257 FNASSNLVLLGLDSNLLRGSIPVAF-KHM-------VSVSFLGLASNEFEGGVPDFFG--NMCSLTMLNISDNKLRGHFP 326 (373)
Q Consensus 257 ~~~~~~L~~L~l~~n~l~~~~~~~l-~~l-------~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~~p 326 (373)
+..+++|+.|++++|+++ .+|... ... ++|+.|++++|+++ .+|..+. .+++|++|++++|++++ +|
T Consensus 453 ~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip 529 (636)
T 4eco_A 453 FSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FP 529 (636)
T ss_dssp HHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CC
T ss_pred HccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cC
Confidence 776666888888888887 454432 222 27888888888887 5666665 77888888888888876 67
Q ss_pred hhhhccCCCCccCEEEC------cCCcCcccCchhhhCCCCCCEEeCcCCCC
Q 040379 327 ELIQNLSRFSSLKELYL------ENNRLNGFTNNSIGQMSKLRTLSLNGNSL 372 (373)
Q Consensus 327 ~~~~~l~~~~~L~~L~L------~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 372 (373)
..+..++ +|+.|++ ++|++.+.+|..+.++++|++|++++|++
T Consensus 530 ~~~~~l~---~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 530 TQPLNSS---TLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp CGGGGCS---SCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred hhhhcCC---CCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 6666544 7777777 45667777777777777777777777776
No 21
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.9e-31 Score=262.94 Aligned_cols=283 Identities=22% Similarity=0.252 Sum_probs=160.4
Q ss_pred CcEEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCC
Q 040379 80 GHVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSA 159 (373)
Q Consensus 80 ~~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 159 (373)
.+++.++++++ .+.+..+..|.++++|++|++++|.+++. .|..++++++|++|++++|.+++..+..+.++++
T Consensus 25 ~~l~~L~Ls~n-----~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 98 (680)
T 1ziw_A 25 TNITVLNLTHN-----QLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98 (680)
T ss_dssp TTCSEEECCSS-----CCCCCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCcEEECCCC-----CCCCcCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhhccCCC
Confidence 46777777765 44444445566667777777776666654 5556666666666666666666433335666666
Q ss_pred CCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccC
Q 040379 160 LQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQ 239 (373)
Q Consensus 160 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~ 239 (373)
|++|++++|++. ...+..+.++++|++|++++|.+.+. .+..++.+++|++|++++|.+++..+..+..+ .+++|+
T Consensus 99 L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~~~L~ 174 (680)
T 1ziw_A 99 LTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSST--KLGTQVQLENLQELLLSNNKIQALKSEELDIF-ANSSLK 174 (680)
T ss_dssp CSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCC--CCCSSSCCTTCCEEECCSSCCCCBCHHHHGGG-TTCEES
T ss_pred CCEEECCCCccC-ccChhHccccCCCCEEECCCCccccc--CchhhcccccCCEEEccCCcccccCHHHhhcc-cccccc
Confidence 666666666662 22223456666666666666666553 23445566666666666666655544433211 014555
Q ss_pred EEECCCCcCCCCchh---------------------------------------------------HHHhcc-ccCcEEE
Q 040379 240 FLELSENNLTNSIYP---------------------------------------------------WLFNAS-SNLVLLG 267 (373)
Q Consensus 240 ~L~ls~n~l~~~~~~---------------------------------------------------~~~~~~-~~L~~L~ 267 (373)
+|++++|.+++..|. .+.... ++|+.|+
T Consensus 175 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~ 254 (680)
T 1ziw_A 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254 (680)
T ss_dssp EEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEE
T ss_pred EEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEE
Confidence 566655555533322 111111 1245555
Q ss_pred ccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCccc-----Cchh-hhccCCCCccCEE
Q 040379 268 LDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGH-----FPEL-IQNLSRFSSLKEL 341 (373)
Q Consensus 268 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-----~p~~-~~~l~~~~~L~~L 341 (373)
+++|.+++..|..++.+++|++|++++|.+++..|..+..+++|++|++++|...+. +|.. -..+..+++|++|
T Consensus 255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L 334 (680)
T 1ziw_A 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL 334 (680)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEE
T ss_pred CCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEE
Confidence 555555444444445555555555555555544444444455555555544433221 1110 0023345689999
Q ss_pred ECcCCcCcccCchhhhCCCCCCEEeCcCCCC
Q 040379 342 YLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 372 (373)
Q Consensus 342 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 372 (373)
++++|.+++..+..+.++++|++|++++|.+
T Consensus 335 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~ 365 (680)
T 1ziw_A 335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365 (680)
T ss_dssp ECCSCCBCCCCTTTTTTCTTCCEEECTTCBS
T ss_pred ECCCCccCCCChhHhccccCCcEEECCCCch
Confidence 9999999988888888899999999888753
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.98 E-value=4.3e-32 Score=261.55 Aligned_cols=131 Identities=23% Similarity=0.240 Sum_probs=75.8
Q ss_pred CccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccc--cccccccCCCCCCEEEccCCcCcccccc-cccCCCCCC
Q 040379 236 TSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRG--SIPVAFKHMVSVSFLGLASNEFEGGVPD-FFGNMCSLT 312 (373)
Q Consensus 236 ~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~ 312 (373)
++|++|++++|.+++.+|..+. .+++|+.|++++|++++ .+|..++.+++|++|++++|.+++.+|. .+..+++|+
T Consensus 324 ~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~ 402 (520)
T 2z7x_B 324 SPFLHLDFSNNLLTDTVFENCG-HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402 (520)
T ss_dssp CCCCEEECCSSCCCTTTTTTCC-CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred CcccEEEeECCccChhhhhhhc-cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence 4555555555555544443332 23335555555555554 3344455555555566655555543333 245555666
Q ss_pred eEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCcccCchhhhCCCCCCEEeCcCCCCC
Q 040379 313 MLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLI 373 (373)
Q Consensus 313 ~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~lt 373 (373)
+|++++|++++.+|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+|+
T Consensus 403 ~L~Ls~N~l~~~~~~~l~-----~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 403 SLNMSSNILTDTIFRCLP-----PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457 (520)
T ss_dssp EEECCSSCCCGGGGGSCC-----TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred EEECcCCCCCcchhhhhc-----ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC
Confidence 666666665554443321 37788888888877 45555667888888888888764
No 23
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=9.3e-31 Score=237.64 Aligned_cols=266 Identities=21% Similarity=0.240 Sum_probs=223.1
Q ss_pred EEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCC
Q 040379 82 VIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQ 161 (373)
Q Consensus 82 v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 161 (373)
++.++++++ .+. .+|..+ .+++++|++++|.+++. .+..++++++|++|++++|.+++..|..+.++++|+
T Consensus 33 l~~l~~~~~-----~l~-~lp~~~--~~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (330)
T 1xku_A 33 LRVVQCSDL-----GLE-KVPKDL--PPDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 103 (330)
T ss_dssp TTEEECTTS-----CCC-SCCCSC--CTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred CeEEEecCC-----Ccc-ccCccC--CCCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCC
Confidence 456777765 333 345444 36899999999999975 556799999999999999999987799999999999
Q ss_pred EEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCC--CCcccccCCCCCCccC
Q 040379 162 HLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPP--IVPLSLSNLNYSTSLQ 239 (373)
Q Consensus 162 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~~~~L~ 239 (373)
+|++++|++.. .+..+ .++|++|++++|.+.+. .+..+..+++|++|++++|.+.. ..+..+..+ ++|+
T Consensus 104 ~L~Ls~n~l~~--l~~~~--~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l---~~L~ 174 (330)
T 1xku_A 104 RLYLSKNQLKE--LPEKM--PKTLQELRVHENEITKV--RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM---KKLS 174 (330)
T ss_dssp EEECCSSCCSB--CCSSC--CTTCCEEECCSSCCCBB--CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC---TTCC
T ss_pred EEECCCCcCCc--cChhh--cccccEEECCCCccccc--CHhHhcCCccccEEECCCCcCCccCcChhhccCC---CCcC
Confidence 99999999943 22222 27999999999999875 34678999999999999999864 566777777 9999
Q ss_pred EEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCC
Q 040379 240 FLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDN 319 (373)
Q Consensus 240 ~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 319 (373)
+|++++|.++ .+|..+. ++|+.|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 175 ~L~l~~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 250 (330)
T 1xku_A 175 YIRIADTNIT-TIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250 (330)
T ss_dssp EEECCSSCCC-SCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS
T ss_pred EEECCCCccc-cCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC
Confidence 9999999998 5665443 56999999999999888899999999999999999999888888999999999999999
Q ss_pred cCcccCchhhhccCCCCccCEEECcCCcCcccCchhhhC------CCCCCEEeCcCCCCC
Q 040379 320 KLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQ------MSKLRTLSLNGNSLI 373 (373)
Q Consensus 320 ~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~l~~n~lt 373 (373)
+++ .+|..+..+ ++|++|++++|++++..+..+.. .+.++.|++++|++.
T Consensus 251 ~l~-~lp~~l~~l---~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 251 KLV-KVPGGLADH---KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp CCS-SCCTTTTTC---SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred cCc-cCChhhccC---CCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 999 777766544 49999999999999987776643 378999999999873
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.98 E-value=4.8e-31 Score=259.91 Aligned_cols=283 Identities=26% Similarity=0.262 Sum_probs=198.4
Q ss_pred CcEEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCC
Q 040379 80 GHVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSA 159 (373)
Q Consensus 80 ~~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 159 (373)
..++.|+++++ .+++..+..|.++++|++|++++|.+++. .+..|+++++|++|+|++|++++..+..|.++++
T Consensus 52 ~~~~~LdLs~N-----~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~ 125 (635)
T 4g8a_A 52 FSTKNLDLSFN-----PLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 125 (635)
T ss_dssp TTCCEEECTTS-----CCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTT
T ss_pred cCCCEEEeeCC-----CCCCCCHHHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCC
Confidence 36788888886 67766667788888888888888888864 5567888888888888888888555566788888
Q ss_pred CCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCC-------
Q 040379 160 LQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNL------- 232 (373)
Q Consensus 160 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l------- 232 (373)
|++|++++|++.. .....++++++|++|++++|.+.... .+..++.+++|++|++++|.+++..+..+..+
T Consensus 126 L~~L~Ls~N~l~~-l~~~~~~~L~~L~~L~Ls~N~l~~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~ 203 (635)
T 4g8a_A 126 LQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFK-LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 203 (635)
T ss_dssp CCEEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCC-CCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred CCEEECCCCcCCC-CChhhhhcCcccCeeccccCccccCC-CchhhccchhhhhhcccCccccccccccccchhhhhhhh
Confidence 8888888888833 22235777888888888888776542 34566777777777777775543222111000
Q ss_pred --------------------------------------------------------------------------------
Q 040379 233 -------------------------------------------------------------------------------- 232 (373)
Q Consensus 233 -------------------------------------------------------------------------------- 232 (373)
T Consensus 204 ~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~ 283 (635)
T 4g8a_A 204 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 283 (635)
T ss_dssp CEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEE
T ss_pred hhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhh
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 040379 233 -------------------------------------------------------------------------------- 232 (373)
Q Consensus 233 -------------------------------------------------------------------------------- 232 (373)
T Consensus 284 ~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 363 (635)
T 4g8a_A 284 EEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN 363 (635)
T ss_dssp EEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCC
T ss_pred hhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCC
Confidence
Q ss_pred ----CCCCccCEEECCCCcCCCC---------------------------------------------------------
Q 040379 233 ----NYSTSLQFLELSENNLTNS--------------------------------------------------------- 251 (373)
Q Consensus 233 ----~~~~~L~~L~ls~n~l~~~--------------------------------------------------------- 251 (373)
..+++|+.+++++|.+...
T Consensus 364 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~ 443 (635)
T 4g8a_A 364 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 443 (635)
T ss_dssp BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTT
T ss_pred Ccccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccc
Confidence 0123444555554443210
Q ss_pred ----------------chhHHHhccccCcEEEccCcccc-ccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeE
Q 040379 252 ----------------IYPWLFNASSNLVLLGLDSNLLR-GSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTML 314 (373)
Q Consensus 252 ----------------~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 314 (373)
+++..+...+.++.|++++|.+. +..|..+..+++|++|+|++|++++..|..|.++++|++|
T Consensus 444 l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L 523 (635)
T 4g8a_A 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 523 (635)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred ccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEE
Confidence 00111222334666666666543 3466778888888999999998888888888888899999
Q ss_pred eCcCCcCcccCchhhhccCCCCccCEEECcCCcCcccCchhhhCC-CCCCEEeCcCCCCC
Q 040379 315 NISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQM-SKLRTLSLNGNSLI 373 (373)
Q Consensus 315 ~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~lt 373 (373)
+|++|++++..|..+..++ +|++|++++|++++..|..+..+ ++|++|++++|+++
T Consensus 524 ~Ls~N~l~~l~~~~~~~l~---~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 524 NMSHNNFFSLDTFPYKCLN---SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp ECTTSCCCBCCCGGGTTCT---TCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred ECCCCcCCCCChhHHhCCC---CCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 9999988877666665555 88999999999988888888877 57999999988874
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.98 E-value=1.3e-30 Score=251.27 Aligned_cols=275 Identities=23% Similarity=0.267 Sum_probs=207.7
Q ss_pred CcEEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCcccc-CcccccCCCC
Q 040379 80 GHVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEG-PIPSHLGNLS 158 (373)
Q Consensus 80 ~~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~ 158 (373)
.+++.++++++ .+.+..|..|+.+++|++|++++|.++. +|.. .+++|++|++++|.+++ .+|..+++++
T Consensus 45 ~~L~~L~Ls~n-----~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~ 115 (520)
T 2z7x_B 45 SKLRILIISHN-----RIQYLDISVFKFNQELEYLDLSHNKLVK--ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMS 115 (520)
T ss_dssp TTCCEEECCSS-----CCCEEEGGGGTTCTTCCEEECCSSCCCE--EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCT
T ss_pred ccccEEecCCC-----ccCCcChHHhhcccCCCEEecCCCceee--cCcc--ccCCccEEeccCCccccccchhhhccCC
Confidence 45677777765 6677777788888888888888888873 5655 67888888888888875 4677788888
Q ss_pred CCCEEEccCCCCCCC------------------------CCCcccCC---------------------------------
Q 040379 159 ALQHLDLSLNHLFSA------------------------GNLDWLSH--------------------------------- 181 (373)
Q Consensus 159 ~L~~L~L~~n~~~~~------------------------~~~~~~~~--------------------------------- 181 (373)
+|++|++++|.+... ..+..+..
T Consensus 116 ~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L 195 (520)
T 2z7x_B 116 QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195 (520)
T ss_dssp TCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEEC
T ss_pred cceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeec
Confidence 888888888776310 00011111
Q ss_pred --------------------------------------------------CCCCCEEEccCccCCCC-cch---------
Q 040379 182 --------------------------------------------------LSSLTYLDLGSNNLSRS-TDW--------- 201 (373)
Q Consensus 182 --------------------------------------------------l~~L~~L~l~~n~~~~~-~~~--------- 201 (373)
.++|++|++++|.+.+. +..
T Consensus 196 ~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l 275 (520)
T 2z7x_B 196 NIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSL 275 (520)
T ss_dssp CEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCC
T ss_pred cccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccC
Confidence 11455555555554421 100
Q ss_pred ---------------h----hh----------------------hCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCE
Q 040379 202 ---------------L----QV----------------------VGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQF 240 (373)
Q Consensus 202 ---------------~----~~----------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~ 240 (373)
+ .. ...+++|++|++++|.+++..|..++.+ ++|++
T Consensus 276 ~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~ 352 (520)
T 2z7x_B 276 KALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHL---TELET 352 (520)
T ss_dssp CEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCC---SSCCE
T ss_pred ceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccC---CCCCE
Confidence 0 00 1677899999999999999888888888 99999
Q ss_pred EECCCCcCCC--CchhHHHhccccCcEEEccCcccccccccc-ccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCc
Q 040379 241 LELSENNLTN--SIYPWLFNASSNLVLLGLDSNLLRGSIPVA-FKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNIS 317 (373)
Q Consensus 241 L~ls~n~l~~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 317 (373)
|++++|.+++ .+|.. +..+++|+.|++++|.+++.+|.. +..+++|++|++++|.+++..|..+. ++|++|+++
T Consensus 353 L~L~~N~l~~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls 429 (520)
T 2z7x_B 353 LILQMNQLKELSKIAEM-TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLH 429 (520)
T ss_dssp EECCSSCCCBHHHHHHH-HTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECC
T ss_pred EEccCCccCccccchHH-HhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECC
Confidence 9999999985 33333 445566999999999999856654 78899999999999999988877664 799999999
Q ss_pred CCcCcccCchhhhccCCCCccCEEECcCCcCcccCchhhhCCCCCCEEeCcCCCCC
Q 040379 318 DNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLI 373 (373)
Q Consensus 318 ~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~lt 373 (373)
+|+++ .+|..+..++ +|++|++++|++++.++..+..+++|++|++++|+++
T Consensus 430 ~N~l~-~ip~~~~~l~---~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 430 SNKIK-SIPKQVVKLE---ALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp SSCCC-CCCGGGGGCT---TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccc-ccchhhhcCC---CCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCc
Confidence 99999 7887776555 9999999999999765555889999999999999974
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=1.8e-31 Score=259.53 Aligned_cols=109 Identities=24% Similarity=0.287 Sum_probs=76.9
Q ss_pred CcEEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCC
Q 040379 80 GHVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSA 159 (373)
Q Consensus 80 ~~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 159 (373)
.+++.++++++ .+.+..+..|..+++|++|++++|.+++. .|..++++++|++|++++|+++ .+|.. .+++
T Consensus 52 ~~L~~L~Ls~N-----~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~ 122 (562)
T 3a79_B 52 PRTKALSLSQN-----SISELRMPDISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMAS 122 (562)
T ss_dssp TTCCEEECCSS-----CCCCCCGGGTTTCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECTTSCCC-EECSC--CCTT
T ss_pred CCcCEEECCCC-----CccccChhhhccCCCccEEECCCCCCCcC-CHHHhCCCCCCCEEECCCCcCC-ccCcc--cccc
Confidence 45677777775 55555556777777888888888777764 5667777777888888877777 56655 6777
Q ss_pred CCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCC
Q 040379 160 LQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSR 197 (373)
Q Consensus 160 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 197 (373)
|++|++++|++.....+..+.++++|++|++++|.+..
T Consensus 123 L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 123 LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp CSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred CCEEECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence 77777777777443334567777777777777777654
No 27
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=3.3e-31 Score=266.10 Aligned_cols=272 Identities=20% Similarity=0.230 Sum_probs=175.3
Q ss_pred CcEEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCC-CCC-CCCccccCC-------CCCCCEEeCcCCccccCc
Q 040379 80 GHVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNN-FSG-SPIPEFIGS-------LTKLSYLDLSFAEFEGPI 150 (373)
Q Consensus 80 ~~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~~l~~-------l~~L~~L~L~~n~l~~~~ 150 (373)
.+++.|+++++ .+.+.+|..++++++|++|++++|. +++ . +|..++. +++|++|++++|+++ .+
T Consensus 491 ~~L~~L~Ls~N-----~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~-iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~i 563 (876)
T 4ecn_A 491 KDLTDVELYNC-----PNMTQLPDFLYDLPELQSLNIACNRGISAAQ-LKADWTRLADDEDTGPKIQIFYMGYNNLE-EF 563 (876)
T ss_dssp TTCCEEEEESC-----TTCCSCCGGGGGCSSCCEEECTTCTTSCHHH-HHHHHHHHHHCTTTTTTCCEEECCSSCCC-BC
T ss_pred CCCCEEECcCC-----CCCccChHHHhCCCCCCEEECcCCCCccccc-chHHHHhhhhcccccCCccEEEeeCCcCC-cc
Confidence 45667777765 5666777777777777777777776 665 3 4543333 336666666666666 56
Q ss_pred cc--ccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCC-CcEEEccCCCCCCCCcc
Q 040379 151 PS--HLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPL-LTTLYLYRCHLPPIVPL 227 (373)
Q Consensus 151 p~--~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~ 227 (373)
|. .+.++++|++|++++|.+. .. +.+..+++|++|++++|.+.. ++..+..+++ |++|++++|.++ .+|.
T Consensus 564 p~~~~l~~L~~L~~L~Ls~N~l~--~l-p~~~~L~~L~~L~Ls~N~l~~---lp~~l~~l~~~L~~L~Ls~N~L~-~lp~ 636 (876)
T 4ecn_A 564 PASASLQKMVKLGLLDCVHNKVR--HL-EAFGTNVKLTDLKLDYNQIEE---IPEDFCAFTDQVEGLGFSHNKLK-YIPN 636 (876)
T ss_dssp CCHHHHTTCTTCCEEECTTSCCC--BC-CCCCTTSEESEEECCSSCCSC---CCTTSCEECTTCCEEECCSSCCC-SCCS
T ss_pred CChhhhhcCCCCCEEECCCCCcc--cc-hhhcCCCcceEEECcCCcccc---chHHHhhccccCCEEECcCCCCC-cCch
Confidence 66 6666666666666666663 11 245555666666666665553 3344455555 555555555544 2332
Q ss_pred cccCC--------------------------C--CCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccc
Q 040379 228 SLSNL--------------------------N--YSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPV 279 (373)
Q Consensus 228 ~~~~l--------------------------~--~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 279 (373)
.+..+ . ..++|+.|++++|.++ .+|..++..+++|+.|++++|+++ .+|.
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~ 714 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPE 714 (876)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCT
T ss_pred hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccCh
Confidence 22211 1 1136777777777777 677777766667888888888887 5555
Q ss_pred cccCC--------CCCCEEEccCCcCccccccccc--CCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcC----
Q 040379 280 AFKHM--------VSVSFLGLASNEFEGGVPDFFG--NMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLEN---- 345 (373)
Q Consensus 280 ~l~~l--------~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~---- 345 (373)
.+... ++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..++ +|+.|+|++
T Consensus 715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~---~L~~L~Ls~N~~l 789 (876)
T 4ecn_A 715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSS---QLKAFGIRHQRDA 789 (876)
T ss_dssp TSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCT---TCCEEECCCCBCT
T ss_pred HHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCC---CCCEEECCCCCCc
Confidence 43322 27888888888887 5676665 78888888888888876 666666554 788887765
Q ss_pred --CcCcccCchhhhCCCCCCEEeCcCCCC
Q 040379 346 --NRLNGFTNNSIGQMSKLRTLSLNGNSL 372 (373)
Q Consensus 346 --n~l~~~~~~~~~~l~~L~~L~l~~n~l 372 (373)
|.+.+.+|..+.++++|+.|++++|+|
T Consensus 790 s~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 790 EGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp TCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred ccccccccChHHHhcCCCCCEEECCCCCC
Confidence 667777777777788888888888776
No 28
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=4.7e-32 Score=244.15 Aligned_cols=229 Identities=25% Similarity=0.358 Sum_probs=177.1
Q ss_pred CCCCEEeCCCCCCCC--CCCccccCCCCCCCEEeCcC-CccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCC
Q 040379 109 HRLTYLDLSLNNFSG--SPIPEFIGSLTKLSYLDLSF-AEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSL 185 (373)
Q Consensus 109 ~~L~~L~l~~n~l~~--~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L 185 (373)
.++++|++++|.+++ . +|..++++++|++|++++ |.+.+.+|..+.++++|++|++++|.+
T Consensus 50 ~~l~~L~L~~~~l~~~~~-~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l--------------- 113 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYP-IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV--------------- 113 (313)
T ss_dssp CCEEEEEEECCCCSSCEE-CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECC---------------
T ss_pred ceEEEEECCCCCccCCcc-cChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCee---------------
Confidence 355666666666654 3 555566666666666663 556555665555555555555555555
Q ss_pred CEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcE
Q 040379 186 TYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVL 265 (373)
Q Consensus 186 ~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~ 265 (373)
.+ .++..+..+++|++|++++|.+.+..|..+..+ ++|++|++++|.+++.+|..+....++|+.
T Consensus 114 ----------~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~ 178 (313)
T 1ogq_A 114 ----------SG--AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL---PNLVGITFDGNRISGAIPDSYGSFSKLFTS 178 (313)
T ss_dssp ----------EE--ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC---TTCCEEECCSSCCEEECCGGGGCCCTTCCE
T ss_pred ----------CC--cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcC---CCCCeEECcCCcccCcCCHHHhhhhhcCcE
Confidence 32 133455666666666666776666677777777 888888888888887788777776656999
Q ss_pred EEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcC
Q 040379 266 LGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLEN 345 (373)
Q Consensus 266 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~ 345 (373)
|++++|++++.+|..+..++ |++|++++|.+++..|..+..+++|++|++++|++++.+|. +..+++|++|++++
T Consensus 179 L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~l~~L~~L~Ls~ 253 (313)
T 1ogq_A 179 MTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK----VGLSKNLNGLDLRN 253 (313)
T ss_dssp EECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG----CCCCTTCCEEECCS
T ss_pred EECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc----ccccCCCCEEECcC
Confidence 99999999999999999887 99999999999999999999999999999999999977665 34456999999999
Q ss_pred CcCcccCchhhhCCCCCCEEeCcCCCCC
Q 040379 346 NRLNGFTNNSIGQMSKLRTLSLNGNSLI 373 (373)
Q Consensus 346 n~l~~~~~~~~~~l~~L~~L~l~~n~lt 373 (373)
|.+++.+|..+..+++|++|++++|+++
T Consensus 254 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp SCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred CcccCcCChHHhcCcCCCEEECcCCccc
Confidence 9999999999999999999999999864
No 29
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=6.6e-31 Score=255.99 Aligned_cols=135 Identities=25% Similarity=0.385 Sum_probs=103.5
Q ss_pred CccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEEEccCCcCc-ccccccccCCCCCCeE
Q 040379 236 TSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFE-GGVPDFFGNMCSLTML 314 (373)
Q Consensus 236 ~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L 314 (373)
++|++|++++|.+.+..+...+..+++|+.|++++|.+++..|..+..+++|++|++++|.++ +.+|..+..+++|++|
T Consensus 396 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L 475 (570)
T 2z63_A 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475 (570)
T ss_dssp TTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEE
Confidence 566666666666654444344455566888888888887777777888888888888888887 4677788888888888
Q ss_pred eCcCCcCcccCchhhhccCCCCccCEEECcCCcCcccCchhhhCCCCCCEEeCcCCCCC
Q 040379 315 NISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLI 373 (373)
Q Consensus 315 ~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~lt 373 (373)
++++|++++..|..+..++ +|++|++++|++++.++..+.++++|+.|++++|+++
T Consensus 476 ~l~~n~l~~~~~~~~~~l~---~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 476 DLSQCQLEQLSPTAFNSLS---SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp ECTTSCCCEECTTTTTTCT---TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ECCCCccccCChhhhhccc---CCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence 8888888877676665544 8889999998888888777888889999999988864
No 30
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=9.4e-31 Score=256.84 Aligned_cols=108 Identities=19% Similarity=0.317 Sum_probs=63.2
Q ss_pred CcEEEccCcccccccc-ccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCccc-CchhhhccCCCCccCE
Q 040379 263 LVLLGLDSNLLRGSIP-VAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGH-FPELIQNLSRFSSLKE 340 (373)
Q Consensus 263 L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~~~~L~~ 340 (373)
|+.|++++|.+.+..| ..+..+++|++|++++|.+++..|..+..+++|++|++++|++++. +|..+.. +++|++
T Consensus 401 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~---l~~L~~ 477 (606)
T 3vq2_A 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN---TTNLTF 477 (606)
T ss_dssp CCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT---CTTCCE
T ss_pred CCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc---CCCCCE
Confidence 3333333333333333 3444555555555555555555555555566666666666666542 3443333 347777
Q ss_pred EECcCCcCcccCchhhhCCCCCCEEeCcCCCCC
Q 040379 341 LYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLI 373 (373)
Q Consensus 341 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~lt 373 (373)
|++++|.+++..|..+.++++|++|++++|+++
T Consensus 478 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 510 (606)
T 3vq2_A 478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL 510 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred EECCCCcCCccChhhhcccccCCEEECCCCcCC
Confidence 777777777777777777777788887777764
No 31
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.9e-30 Score=235.81 Aligned_cols=265 Identities=23% Similarity=0.233 Sum_probs=222.1
Q ss_pred EEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCC
Q 040379 82 VIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQ 161 (373)
Q Consensus 82 v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 161 (373)
++.++++++ .+. .+|..+ .++|++|++++|.+++. .+..+.++++|++|++++|.+++..|..+.++++|+
T Consensus 35 l~~l~~~~~-----~l~-~ip~~~--~~~l~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 105 (332)
T 2ft3_A 35 LRVVQCSDL-----GLK-AVPKEI--SPDTTLLDLQNNDISEL-RKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ 105 (332)
T ss_dssp TTEEECCSS-----CCS-SCCSCC--CTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCC
T ss_pred CCEEECCCC-----Ccc-ccCCCC--CCCCeEEECCCCcCCcc-CHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCC
Confidence 456777775 443 455555 37899999999999864 567899999999999999999987789999999999
Q ss_pred EEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCC--CCcccccCCCCCCccC
Q 040379 162 HLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPP--IVPLSLSNLNYSTSLQ 239 (373)
Q Consensus 162 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~~~~L~ 239 (373)
+|++++|++.. .+..+. ++|++|++++|.+...+ +..+..+++|++|++++|.++. ..+..+..+ +|+
T Consensus 106 ~L~L~~n~l~~--l~~~~~--~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l----~L~ 175 (332)
T 2ft3_A 106 KLYISKNHLVE--IPPNLP--SSLVELRIHDNRIRKVP--KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL----KLN 175 (332)
T ss_dssp EEECCSSCCCS--CCSSCC--TTCCEEECCSSCCCCCC--SGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC----CCS
T ss_pred EEECCCCcCCc--cCcccc--ccCCEEECCCCccCccC--HhHhCCCccCCEEECCCCccccCCCCcccccCC----ccC
Confidence 99999999943 222222 89999999999998753 3568999999999999999863 555555554 899
Q ss_pred EEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCC
Q 040379 240 FLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDN 319 (373)
Q Consensus 240 ~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 319 (373)
+|++++|.++ .+|..+. ++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|
T Consensus 176 ~L~l~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 251 (332)
T 2ft3_A 176 YLRISEAKLT-GIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN 251 (332)
T ss_dssp CCBCCSSBCS-SCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS
T ss_pred EEECcCCCCC-ccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC
Confidence 9999999998 4666543 56999999999999888889999999999999999999888888999999999999999
Q ss_pred cCcccCchhhhccCCCCccCEEECcCCcCcccCchhhhC------CCCCCEEeCcCCCCC
Q 040379 320 KLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQ------MSKLRTLSLNGNSLI 373 (373)
Q Consensus 320 ~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~l~~n~lt 373 (373)
+++ .+|..+..++ +|++|++++|++++..+..+.. .++|+.|++++|+++
T Consensus 252 ~l~-~lp~~l~~l~---~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 252 KLS-RVPAGLPDLK---LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CCC-BCCTTGGGCT---TCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred cCe-ecChhhhcCc---cCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 999 7887776655 9999999999999987776654 367999999999874
No 32
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=6.2e-31 Score=241.06 Aligned_cols=273 Identities=21% Similarity=0.274 Sum_probs=144.2
Q ss_pred CCCCCcccceEecCC-----------CCcEEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCCccccCC
Q 040379 64 KRDCCKWTGVGCSNR-----------TGHVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGS 132 (373)
Q Consensus 64 ~~~~c~w~~v~c~~~-----------~~~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~ 132 (373)
....|.|.++ |+-. ..+++.++++++ .+.+..+..+.++++|++|++++|.+++. .+..+++
T Consensus 26 ~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n-----~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~ 98 (353)
T 2z80_A 26 ASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNN-----RITYISNSDLQRCVNLQALVLTSNGINTI-EEDSFSS 98 (353)
T ss_dssp -CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTS-----CCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTT
T ss_pred cCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCC-----cCcccCHHHhccCCCCCEEECCCCccCcc-CHhhcCC
Confidence 4456777766 5321 124555555553 44443344556666666666666666543 4445566
Q ss_pred CCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCCEEEccCcc-CCCCcchhhhhCCCCCC
Q 040379 133 LTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNN-LSRSTDWLQVVGNLPLL 211 (373)
Q Consensus 133 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~l~~L 211 (373)
+++|++|++++|++++..+..+.++++|++|++++|++........+..+++|++|++++|. +... .+..+..+++|
T Consensus 99 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~l~~L 176 (353)
T 2z80_A 99 LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI--QRKDFAGLTFL 176 (353)
T ss_dssp CTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE--CTTTTTTCCEE
T ss_pred CCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccccc--CHHHccCCCCC
Confidence 66666666666666533333355666666666666665322211245556666666666653 3322 12445556666
Q ss_pred cEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccc---cCCCCCC
Q 040379 212 TTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAF---KHMVSVS 288 (373)
Q Consensus 212 ~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l---~~l~~L~ 288 (373)
++|++++|.+.+..|..+..+ ++|++|++++|.+. .++...+...++|+.|++++|.+++..+..+ .....++
T Consensus 177 ~~L~l~~n~l~~~~~~~l~~l---~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~ 252 (353)
T 2z80_A 177 EELEIDASDLQSYEPKSLKSI---QNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIK 252 (353)
T ss_dssp EEEEEEETTCCEECTTTTTTC---SEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCC
T ss_pred CEEECCCCCcCccCHHHHhcc---ccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhh
Confidence 666666666665555555555 56666666666654 4555444444556666666666654333222 2234555
Q ss_pred EEEccCCcCcc----cccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCcccC
Q 040379 289 FLGLASNEFEG----GVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFT 352 (373)
Q Consensus 289 ~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~ 352 (373)
.++++++.+++ .+|+.+..+++|++|++++|+++ .+|..+ +..+++|++|++++|++.+..
T Consensus 253 ~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~--~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 253 KFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGI--FDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp EEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTT--TTTCTTCCEEECCSSCBCCCH
T ss_pred ccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHH--HhcCCCCCEEEeeCCCccCcC
Confidence 55666555554 24445555566666666666665 333321 122235666666666655544
No 33
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=7e-30 Score=253.93 Aligned_cols=206 Identities=22% Similarity=0.159 Sum_probs=139.1
Q ss_pred CcEEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCC
Q 040379 80 GHVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSA 159 (373)
Q Consensus 80 ~~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 159 (373)
.+++.++++++ .+.+..|..++++++|++|++++|.+++. .+..++++++|++|++++|++++..|..++++++
T Consensus 49 ~~L~~L~Ls~n-----~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 122 (680)
T 1ziw_A 49 SQLTSLDVGFN-----TISKLEPELCQKLPMLKVLNLQHNELSQL-SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122 (680)
T ss_dssp TTCSEEECCSS-----CCCCCCTTHHHHCTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTT
T ss_pred CcCcEEECCCC-----ccCccCHHHHhcccCcCEEECCCCccCcc-ChhhhccCCCCCEEECCCCccCccChhHccccCC
Confidence 46777888775 56666677788888888888888888753 3345788888888888888887666677888888
Q ss_pred CCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcc------------
Q 040379 160 LQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPL------------ 227 (373)
Q Consensus 160 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------ 227 (373)
|++|++++|.+.. ..+..+.++++|++|++++|.+.+..........+++|++|++++|.+.+..|.
T Consensus 123 L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 201 (680)
T 1ziw_A 123 LITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLF 201 (680)
T ss_dssp CCEEECCSSCCSC-CCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEE
T ss_pred CCEEECCCCcccc-cCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhh
Confidence 8888888888733 234456778888888888887766422111122446666666666666554443
Q ss_pred ---------------------------------------cccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEc
Q 040379 228 ---------------------------------------SLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGL 268 (373)
Q Consensus 228 ---------------------------------------~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l 268 (373)
.+..+. .++|++|++++|.+++..+. .+..+++|++|++
T Consensus 202 l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~-~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L 279 (680)
T 1ziw_A 202 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK-WTNLTMLDLSYNNLNVVGND-SFAWLPQLEYFFL 279 (680)
T ss_dssp CTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGG-GSCCCEEECTTSCCCEECTT-TTTTCTTCCEEEC
T ss_pred ccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccC-cCCCCEEECCCCCcCccCcc-cccCcccccEeeC
Confidence 333220 03499999999999854444 4455667999999
Q ss_pred cCccccccccccccCCCCCCEEEccC
Q 040379 269 DSNLLRGSIPVAFKHMVSVSFLGLAS 294 (373)
Q Consensus 269 ~~n~l~~~~~~~l~~l~~L~~L~L~~ 294 (373)
++|.+++..|..+..+++|+.|++++
T Consensus 280 ~~n~l~~~~~~~~~~l~~L~~L~L~~ 305 (680)
T 1ziw_A 280 EYNNIQHLFSHSLHGLFNVRYLNLKR 305 (680)
T ss_dssp CSCCBSEECTTTTTTCTTCCEEECTT
T ss_pred CCCccCccChhhhcCCCCccEEeccc
Confidence 99999877665555544444444443
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=3.5e-29 Score=228.86 Aligned_cols=261 Identities=26% Similarity=0.401 Sum_probs=164.1
Q ss_pred CcEEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCC
Q 040379 80 GHVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSA 159 (373)
Q Consensus 80 ~~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 159 (373)
.+++.++++++ .+.+ +++ +..+++|++|++++|.++. ++ .+..+++|++|++++|.+.+ ++. +..+++
T Consensus 66 ~~L~~L~l~~n-----~i~~-~~~-~~~l~~L~~L~L~~n~i~~--~~-~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~ 133 (347)
T 4fmz_A 66 TNLEYLNLNGN-----QITD-ISP-LSNLVKLTNLYIGTNKITD--IS-ALQNLTNLRELYLNEDNISD-ISP-LANLTK 133 (347)
T ss_dssp TTCCEEECCSS-----CCCC-CGG-GTTCTTCCEEECCSSCCCC--CG-GGTTCTTCSEEECTTSCCCC-CGG-GTTCTT
T ss_pred CCccEEEccCC-----cccc-chh-hhcCCcCCEEEccCCcccC--ch-HHcCCCcCCEEECcCCcccC-chh-hccCCc
Confidence 46777777776 3332 222 6677777777777777764 33 46777777777777777763 333 667777
Q ss_pred CCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCc-------------
Q 040379 160 LQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVP------------- 226 (373)
Q Consensus 160 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------- 226 (373)
|++|++++|.. ....+.+..+++|++|++++|.+..... +..+++|++|++++|.+.+..+
T Consensus 134 L~~L~l~~n~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~ 207 (347)
T 4fmz_A 134 MYSLNLGANHN--LSDLSPLSNMTGLNYLTVTESKVKDVTP----IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAY 207 (347)
T ss_dssp CCEEECTTCTT--CCCCGGGTTCTTCCEEECCSSCCCCCGG----GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECC
T ss_pred eeEEECCCCCC--cccccchhhCCCCcEEEecCCCcCCchh----hccCCCCCEEEccCCcccccccccCCCccceeecc
Confidence 77777777754 2233345566666666666665554321 4455555555555555544322
Q ss_pred -------ccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEEEccCCcCcc
Q 040379 227 -------LSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEG 299 (373)
Q Consensus 227 -------~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 299 (373)
..+..+ ++|++|++++|.+++ ++. +..+++|+.|++++|.+++. +.+..+++|++|++++|.+++
T Consensus 208 ~n~l~~~~~~~~~---~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~ 279 (347)
T 4fmz_A 208 VNQITDITPVANM---TRLNSLKIGNNKITD-LSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD 279 (347)
T ss_dssp SSCCCCCGGGGGC---TTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC
T ss_pred cCCCCCCchhhcC---CcCCEEEccCCccCC-Ccc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC
Confidence 003333 667777777777663 333 34445577777777777642 346677777777777777775
Q ss_pred cccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCcccCchhhhCCCCCCEEeCcCCCCC
Q 040379 300 GVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLI 373 (373)
Q Consensus 300 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~lt 373 (373)
. ..+..+++|++|++++|++++..|..+..++ +|++|++++|++++..| +..+++|++|++++|+|+
T Consensus 280 ~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~---~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 280 I--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLT---NLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp C--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCT---TCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred C--hhhcCCCCCCEEECcCCcCCCcChhHhhccc---cCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 3 3466777788888888877766666665554 78888888888777655 677788888888888764
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=5.3e-29 Score=227.61 Aligned_cols=260 Identities=26% Similarity=0.410 Sum_probs=197.4
Q ss_pred CcEEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCC
Q 040379 80 GHVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSA 159 (373)
Q Consensus 80 ~~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 159 (373)
.+++.++++++. +. .++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ +| .+..+++
T Consensus 44 ~~L~~L~l~~~~-----i~-~~~-~~~~~~~L~~L~l~~n~i~~--~~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~ 111 (347)
T 4fmz_A 44 ESITKLVVAGEK-----VA-SIQ-GIEYLTNLEYLNLNGNQITD--ISP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTN 111 (347)
T ss_dssp TTCSEEECCSSC-----CC-CCT-TGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTT
T ss_pred ccccEEEEeCCc-----cc-cch-hhhhcCCccEEEccCCcccc--chh-hhcCCcCCEEEccCCcccC-ch-HHcCCCc
Confidence 467888888863 33 233 47889999999999999985 444 8899999999999999984 44 5899999
Q ss_pred CCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccC
Q 040379 160 LQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQ 239 (373)
Q Consensus 160 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~ 239 (373)
|++|++++|.+... +.+..+++|++|++++|..... ...+..+++|++|++++|.+.+..+ +..+ ++|+
T Consensus 112 L~~L~l~~n~i~~~---~~~~~l~~L~~L~l~~n~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l---~~L~ 180 (347)
T 4fmz_A 112 LRELYLNEDNISDI---SPLANLTKMYSLNLGANHNLSD---LSPLSNMTGLNYLTVTESKVKDVTP--IANL---TDLY 180 (347)
T ss_dssp CSEEECTTSCCCCC---GGGTTCTTCCEEECTTCTTCCC---CGGGTTCTTCCEEECCSSCCCCCGG--GGGC---TTCS
T ss_pred CCEEECcCCcccCc---hhhccCCceeEEECCCCCCccc---ccchhhCCCCcEEEecCCCcCCchh--hccC---CCCC
Confidence 99999999999432 3388999999999999965542 2448999999999999999887554 5555 7888
Q ss_pred EEECCCCcCCCCchhHH---------------------HhccccCcEEEccCccccccccccccCCCCCCEEEccCCcCc
Q 040379 240 FLELSENNLTNSIYPWL---------------------FNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFE 298 (373)
Q Consensus 240 ~L~ls~n~l~~~~~~~~---------------------~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 298 (373)
+|++++|.+.+ ++. + +..+++|+.|++++|.+++..+ +..+++|++|++++|.++
T Consensus 181 ~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 256 (347)
T 4fmz_A 181 SLSLNYNQIED-ISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS 256 (347)
T ss_dssp EEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EEEccCCcccc-ccc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccC
Confidence 88888887763 322 1 2233446666666666664322 666777777777777776
Q ss_pred ccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCcccCchhhhCCCCCCEEeCcCCCCC
Q 040379 299 GGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLI 373 (373)
Q Consensus 299 ~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~lt 373 (373)
+. ..+..+++|++|++++|++++. + .+. .+++|+.|++++|.+++..+..+.++++|++|++++|+++
T Consensus 257 ~~--~~~~~l~~L~~L~l~~n~l~~~-~-~~~---~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 257 DI--NAVKDLTKLKMLNVGSNQISDI-S-VLN---NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp CC--GGGTTCTTCCEEECCSSCCCCC-G-GGG---GCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred CC--hhHhcCCCcCEEEccCCccCCC-h-hhc---CCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence 42 3567778888888888887753 2 333 3448999999999998888888888999999999999875
No 36
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=5.3e-30 Score=249.62 Aligned_cols=91 Identities=19% Similarity=0.403 Sum_probs=62.9
Q ss_pred cccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCc-ccCchhhhccCCCCccCEEECcCCcCcccCchhhhC
Q 040379 280 AFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLR-GHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQ 358 (373)
Q Consensus 280 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~ 358 (373)
.+..+++|++|++++|.+++..|..+..+++|++|++++|+++ +.+|..+. .+++|++|++++|++++..|..+..
T Consensus 416 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~---~l~~L~~L~l~~n~l~~~~~~~~~~ 492 (570)
T 2z63_A 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT---ELRNLTFLDLSQCQLEQLSPTAFNS 492 (570)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT---TCTTCCEEECTTSCCCEECTTTTTT
T ss_pred hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhh---cccCCCEEECCCCccccCChhhhhc
Confidence 3455566666666666666556666666677777777777665 34554443 3447888888888888877777888
Q ss_pred CCCCCEEeCcCCCCC
Q 040379 359 MSKLRTLSLNGNSLI 373 (373)
Q Consensus 359 l~~L~~L~l~~n~lt 373 (373)
+++|++|++++|+++
T Consensus 493 l~~L~~L~l~~n~l~ 507 (570)
T 2z63_A 493 LSSLQVLNMASNQLK 507 (570)
T ss_dssp CTTCCEEECCSSCCS
T ss_pred ccCCCEEeCCCCcCC
Confidence 888888888888764
No 37
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=8.3e-30 Score=247.82 Aligned_cols=271 Identities=24% Similarity=0.297 Sum_probs=183.3
Q ss_pred CcEEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCcccc-CcccccCCCC
Q 040379 80 GHVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEG-PIPSHLGNLS 158 (373)
Q Consensus 80 ~~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~ 158 (373)
.+++.++++++ .+++..|..|..+++|++|++++|.++ .+|.. .+++|++|++++|++++ .+|..+++++
T Consensus 76 ~~L~~L~Ls~N-----~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~ 146 (562)
T 3a79_B 76 SELRVLRLSHN-----RIRSLDFHVFLFNQDLEYLDVSHNRLQ--NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLT 146 (562)
T ss_dssp TTCCEEECCSC-----CCCEECTTTTTTCTTCCEEECTTSCCC--EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCT
T ss_pred CCccEEECCCC-----CCCcCCHHHhCCCCCCCEEECCCCcCC--ccCcc--ccccCCEEECCCCCccccCchHhhcccC
Confidence 57888999886 778888889999999999999999998 36666 79999999999999986 4568899999
Q ss_pred CCCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccC-------------------------------------------
Q 040379 159 ALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNL------------------------------------------- 195 (373)
Q Consensus 159 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~------------------------------------------- 195 (373)
+|++|++++|.+.. .....+.++ +|++|++++|.+
T Consensus 147 ~L~~L~L~~n~l~~-~~~~~l~~L-~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~ 224 (562)
T 3a79_B 147 KLTFLGLSAAKFRQ-LDLLPVAHL-HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ 224 (562)
T ss_dssp TCCEEEEECSBCCT-TTTGGGTTS-CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEE
T ss_pred cccEEecCCCcccc-Cchhhhhhc-eeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEE
Confidence 99999999999843 222222222 224444444433
Q ss_pred ----------------------------------------------------------------CCCcchhhhh------
Q 040379 196 ----------------------------------------------------------------SRSTDWLQVV------ 205 (373)
Q Consensus 196 ----------------------------------------------------------------~~~~~~~~~~------ 205 (373)
.+. ++..+
T Consensus 225 ~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--ip~~~~~~~~~ 302 (562)
T 3a79_B 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITER--IDREEFTYSET 302 (562)
T ss_dssp EEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSC--CCCCCCCCCSC
T ss_pred EecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeecc--ccchhhhcccc
Confidence 211 11100
Q ss_pred -----------------------------------------------CCCCCCcEEEccCCCCCCCCcccccCCCCCCcc
Q 040379 206 -----------------------------------------------GNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSL 238 (373)
Q Consensus 206 -----------------------------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L 238 (373)
..+++|++|++++|.+++..|..+..+ ++|
T Consensus 303 ~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l---~~L 379 (562)
T 3a79_B 303 ALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTL---KRL 379 (562)
T ss_dssp SCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSC---SSC
T ss_pred cchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhccc---CCC
Confidence 455666666666666666666666555 667
Q ss_pred CEEECCCCcCCCCchh--HHHhccccCcEEEccCccccccccc-cccCCCCCCEEEccCCcCcccccccccCCCCCCeEe
Q 040379 239 QFLELSENNLTNSIYP--WLFNASSNLVLLGLDSNLLRGSIPV-AFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLN 315 (373)
Q Consensus 239 ~~L~ls~n~l~~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 315 (373)
++|++++|.+++ ++. ..+..+++|+.|++++|.+++.+|. .+..+++|++|++++|++++..|..+. ++|++|+
T Consensus 380 ~~L~L~~N~l~~-~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~ 456 (562)
T 3a79_B 380 QTLILQRNGLKN-FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLD 456 (562)
T ss_dssp CEEECCSSCCCB-TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEE
T ss_pred CEEECCCCCcCC-cccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEE
Confidence 777777766663 221 2233444577777777777653443 356666777777777777665555443 5777777
Q ss_pred CcCCcCcccCchhhhccCCCCccCEEECcCCcCcccCchhhhCCCCCCEEeCcCCCCC
Q 040379 316 ISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLI 373 (373)
Q Consensus 316 L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~lt 373 (373)
+++|+++ .+|..+..+ ++|++|++++|++++.++..+..+++|+.|++++|+++
T Consensus 457 L~~N~l~-~ip~~~~~l---~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 457 LHNNRIM-SIPKDVTHL---QALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp CCSSCCC-CCCTTTTSS---CCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred CCCCcCc-ccChhhcCC---CCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence 7777777 566555433 47888888888888655444778888888888888763
No 38
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=2.2e-30 Score=263.00 Aligned_cols=259 Identities=24% Similarity=0.187 Sum_probs=204.7
Q ss_pred CCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCc-ccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCC
Q 040379 107 QLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPI-PSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSL 185 (373)
Q Consensus 107 ~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L 185 (373)
..+++++|++++|.+++. .+..+.++++|++|++++|...+.+ |..+.++++|++|++++|.+. ...+..+.++++|
T Consensus 22 lp~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~-~~~p~~~~~l~~L 99 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHL 99 (844)
T ss_dssp SCTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC-EECTTSSCSCSSC
T ss_pred CCCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc-ccCHhHccCCccc
Confidence 457899999999999975 7888999999999999999766666 778999999999999999993 3345678999999
Q ss_pred CEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCc-ccccCCCCCCccCEEECCCCcCCCCchhHHHhcc-cc-
Q 040379 186 TYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVP-LSLSNLNYSTSLQFLELSENNLTNSIYPWLFNAS-SN- 262 (373)
Q Consensus 186 ~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~-~~- 262 (373)
++|++++|.+.+...-...++++++|++|++++|.+.+..+ ..++.+ ++|++|++++|.+++..+..+.... ++
T Consensus 100 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L---~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L 176 (844)
T 3j0a_A 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKL---NSLKSIDFSSNQIFLVCEHELEPLQGKTL 176 (844)
T ss_dssp CCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTC---SSCCEEEEESSCCCCCCSGGGHHHHHCSS
T ss_pred CEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhC---CCCCEEECCCCcCCeeCHHHcccccCCcc
Confidence 99999999998632112348899999999999999988765 578888 9999999999999876665544320 22
Q ss_pred -----------------------------CcEEEccCccccccccccccC------------------------------
Q 040379 263 -----------------------------LVLLGLDSNLLRGSIPVAFKH------------------------------ 283 (373)
Q Consensus 263 -----------------------------L~~L~l~~n~l~~~~~~~l~~------------------------------ 283 (373)
|+.|++++|.+++..+..+..
T Consensus 177 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~ 256 (844)
T 3j0a_A 177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD 256 (844)
T ss_dssp CCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGG
T ss_pred ceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCC
Confidence 555666666554433322211
Q ss_pred --------CCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCcccCchh
Q 040379 284 --------MVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNS 355 (373)
Q Consensus 284 --------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~ 355 (373)
.++|+.|++++|.+.+..+..+..+++|++|++++|++++..|..+..++ +|++|++++|.+++..+..
T Consensus 257 ~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~---~L~~L~Ls~N~l~~~~~~~ 333 (844)
T 3j0a_A 257 QNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD---NLQVLNLSYNLLGELYSSN 333 (844)
T ss_dssp GTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCS---SCCEEEEESCCCSCCCSCS
T ss_pred hhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCC---CCCEEECCCCCCCccCHHH
Confidence 25678888888888777777788888899999998888877776665544 8999999999998888888
Q ss_pred hhCCCCCCEEeCcCCCCC
Q 040379 356 IGQMSKLRTLSLNGNSLI 373 (373)
Q Consensus 356 ~~~l~~L~~L~l~~n~lt 373 (373)
+.++++|+.|++++|+++
T Consensus 334 ~~~l~~L~~L~L~~N~i~ 351 (844)
T 3j0a_A 334 FYGLPKVAYIDLQKNHIA 351 (844)
T ss_dssp CSSCTTCCEEECCSCCCC
T ss_pred hcCCCCCCEEECCCCCCC
Confidence 888999999999998764
No 39
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=3.7e-30 Score=231.20 Aligned_cols=257 Identities=24% Similarity=0.275 Sum_probs=156.5
Q ss_pred CCCcccceEecCCCCcEEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCc
Q 040379 66 DCCKWTGVGCSNRTGHVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAE 145 (373)
Q Consensus 66 ~~c~w~~v~c~~~~~~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~ 145 (373)
..|.|.++.|+... ++ .+|..+ .++|++|++++|.++.. .+..+.++++|++|++++|.
T Consensus 5 C~C~~~~l~c~~~~-----------------l~-~ip~~~--~~~l~~L~L~~n~l~~i-~~~~~~~l~~L~~L~L~~n~ 63 (306)
T 2z66_A 5 CSCSGTEIRCNSKG-----------------LT-SVPTGI--PSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSSNG 63 (306)
T ss_dssp CEEETTEEECCSSC-----------------CS-SCCSCC--CTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSC
T ss_pred CeeCCCEEEcCCCC-----------------cc-cCCCCC--CCCCCEEECCCCccCcc-CHhHhhccccCCEEECCCCc
Confidence 34889999996421 11 222222 24667777777777642 23345667777777777776
Q ss_pred ccc--CcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCC
Q 040379 146 FEG--PIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPP 223 (373)
Q Consensus 146 l~~--~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 223 (373)
++. ..|..+..+++|++|++++|.+. ..+..+..+++|++|++++|.+.+.+. ...+..+++|++|++++|.+.+
T Consensus 64 l~~~~~~~~~~~~~~~L~~L~Ls~n~i~--~l~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~ 140 (306)
T 2z66_A 64 LSFKGCCSQSDFGTTSLKYLDLSFNGVI--TMSSNFLGLEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIYLDISHTHTRV 140 (306)
T ss_dssp CCEEEEEEHHHHSCSCCCEEECCSCSEE--EEEEEEETCTTCCEEECTTSEEESSTT-TTTTTTCTTCCEEECTTSCCEE
T ss_pred cCcccCcccccccccccCEEECCCCccc--cChhhcCCCCCCCEEECCCCccccccc-chhhhhccCCCEEECCCCcCCc
Confidence 652 22455556677777777777662 233346667777777777776665321 1356666777777777777666
Q ss_pred CCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEEEccCCcCcccccc
Q 040379 224 IVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPD 303 (373)
Q Consensus 224 ~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 303 (373)
..+..+..+ ++|++|++++|.+.+...+..+..+++|+.|++++|.+++..|..+..+++|++|++++|.+++..+.
T Consensus 141 ~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 217 (306)
T 2z66_A 141 AFNGIFNGL---SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 217 (306)
T ss_dssp CSTTTTTTC---TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG
T ss_pred cchhhcccC---cCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh
Confidence 666656655 66777777777665422222333344577777777766665566666666777777777776655555
Q ss_pred cccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCccc
Q 040379 304 FFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGF 351 (373)
Q Consensus 304 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~ 351 (373)
.+..+++|++|++++|++++..|..+..+. ++|++|++++|++++.
T Consensus 218 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~--~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFP--SSLAFLNLTQNDFACT 263 (306)
T ss_dssp GGTTCTTCCEEECTTSCCCBCSSSSCCCCC--TTCCEEECTTCCEECS
T ss_pred hccCcccCCEeECCCCCCcccCHHHHHhhh--ccCCEEEccCCCeecc
Confidence 566666777777777776665555443331 2666777777766554
No 40
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=3.6e-30 Score=249.75 Aligned_cols=137 Identities=25% Similarity=0.256 Sum_probs=106.3
Q ss_pred CcEEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCcccc-CcccccCCCC
Q 040379 80 GHVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEG-PIPSHLGNLS 158 (373)
Q Consensus 80 ~~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~ 158 (373)
.+++.++++++ .+.+..|..|+.+++|++|++++|.+++. .+..++++++|++|++++|.+++ ..|..+.+++
T Consensus 50 ~~L~~L~Ls~n-----~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 123 (549)
T 2z81_A 50 ANLQVLILKSS-----RINTIEGDAFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123 (549)
T ss_dssp TTCCEEECTTS-----CCCEECTTTTTTCTTCCEEECTTSCCCSC-CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT
T ss_pred CcccEEECCCC-----CcCccChhhccccccCCEEECCCCccCcc-CHHHhccCCCCcEEECCCCcccccchhhhhhccC
Confidence 56888888886 67777778899999999999999999875 66668999999999999999885 3567788999
Q ss_pred CCCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhhh------------------------CCCCCCcEE
Q 040379 159 ALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVV------------------------GNLPLLTTL 214 (373)
Q Consensus 159 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~------------------------~~l~~L~~L 214 (373)
+|++|++++|.+........+.++++|++|++++|.+.+. .+..+ ..+++|++|
T Consensus 124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 201 (549)
T 2z81_A 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY--QSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYL 201 (549)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE--CTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEE
T ss_pred CccEEECCCCccccccCHhhhhcccccCeeeccCCccccc--ChhhhhccccCceEecccCcccccchhhHhhcccccEE
Confidence 9999999999853333334678888888888888887653 12222 346788888
Q ss_pred EccCCCCCCC
Q 040379 215 YLYRCHLPPI 224 (373)
Q Consensus 215 ~l~~n~l~~~ 224 (373)
++++|.+++.
T Consensus 202 ~L~~n~l~~~ 211 (549)
T 2z81_A 202 ELRDTNLARF 211 (549)
T ss_dssp EEESCBCTTC
T ss_pred EccCCccccc
Confidence 8888887763
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=1.1e-29 Score=229.98 Aligned_cols=235 Identities=19% Similarity=0.159 Sum_probs=186.0
Q ss_pred CCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCC
Q 040379 107 QLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLT 186 (373)
Q Consensus 107 ~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 186 (373)
..+++++|++++|.++ .+|..+.++++|++|++++|.++ .+|..++.+++|++|++++|.+. ..+..+.++++|+
T Consensus 79 ~~~~l~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP--QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLR 153 (328)
T ss_dssp TSTTCCEEEEESSCCS--SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCC
T ss_pred cccceeEEEccCCCch--hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCC
Confidence 3577888888888887 47777777888888888888887 77877788888888888888773 3344566666666
Q ss_pred EEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEE
Q 040379 187 YLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLL 266 (373)
Q Consensus 187 ~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L 266 (373)
+|++++|.+.+. ++..+.. .. .+..+..+ ++|++|++++|.++ .+|..+.. +++|+.|
T Consensus 154 ~L~L~~n~~~~~--~p~~~~~------~~---------~~~~~~~l---~~L~~L~L~~n~l~-~lp~~l~~-l~~L~~L 211 (328)
T 4fcg_A 154 ELSIRACPELTE--LPEPLAS------TD---------ASGEHQGL---VNLQSLRLEWTGIR-SLPASIAN-LQNLKSL 211 (328)
T ss_dssp EEEEEEETTCCC--CCSCSEE------EC----------CCCEEES---TTCCEEEEEEECCC-CCCGGGGG-CTTCCEE
T ss_pred EEECCCCCCccc--cChhHhh------cc---------chhhhccC---CCCCEEECcCCCcC-cchHhhcC-CCCCCEE
Confidence 666666554432 1111110 00 11123346 89999999999998 78877544 4569999
Q ss_pred EccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCC
Q 040379 267 GLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENN 346 (373)
Q Consensus 267 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n 346 (373)
++++|.+++ +|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|..+..++ +|++|++++|
T Consensus 212 ~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~---~L~~L~L~~n 287 (328)
T 4fcg_A 212 KIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT---QLEKLDLRGC 287 (328)
T ss_dssp EEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCT---TCCEEECTTC
T ss_pred EccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCC---CCCEEeCCCC
Confidence 999999994 677899999999999999999999999999999999999999999999998877766 9999999999
Q ss_pred cCcccCchhhhCCCCCCEEeCcCCCC
Q 040379 347 RLNGFTNNSIGQMSKLRTLSLNGNSL 372 (373)
Q Consensus 347 ~l~~~~~~~~~~l~~L~~L~l~~n~l 372 (373)
++.+.+|..++++++|+.+++..+.+
T Consensus 288 ~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 288 VNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp TTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred CchhhccHHHhhccCceEEeCCHHHH
Confidence 99999999999999999999987654
No 42
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=6.8e-30 Score=229.46 Aligned_cols=248 Identities=23% Similarity=0.273 Sum_probs=207.9
Q ss_pred CEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCC-CcccCCCCCCCEEEc
Q 040379 112 TYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGN-LDWLSHLSSLTYLDL 190 (373)
Q Consensus 112 ~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~-~~~~~~l~~L~~L~l 190 (373)
+.++++++.++. +|..+. ++|++|++++|+++...+..+.++++|++|++++|.+...+. +..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~~--ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLTS--VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCSS--CCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCccc--CCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 578999988884 666543 699999999999994434457899999999999999843221 235567899999999
Q ss_pred cCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCc-ccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEcc
Q 040379 191 GSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVP-LSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLD 269 (373)
Q Consensus 191 ~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~ 269 (373)
++|.+.. ++..+..+++|++|++++|.+.+..+ ..+..+ ++|++|++++|.+.+..+. .+..+++|++|+++
T Consensus 86 s~n~i~~---l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~ 158 (306)
T 2z66_A 86 SFNGVIT---MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL---RNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMA 158 (306)
T ss_dssp CSCSEEE---EEEEEETCTTCCEEECTTSEEESSTTTTTTTTC---TTCCEEECTTSCCEECSTT-TTTTCTTCCEEECT
T ss_pred CCCcccc---ChhhcCCCCCCCEEECCCCcccccccchhhhhc---cCCCEEECCCCcCCccchh-hcccCcCCCEEECC
Confidence 9999875 45668899999999999999987655 466677 9999999999999855444 34455669999999
Q ss_pred Cccccc-cccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcC
Q 040379 270 SNLLRG-SIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRL 348 (373)
Q Consensus 270 ~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l 348 (373)
+|.+++ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+.. +++|++|++++|++
T Consensus 159 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~---l~~L~~L~L~~N~l 235 (306)
T 2z66_A 159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC---LNSLQVLDYSLNHI 235 (306)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTT---CTTCCEEECTTSCC
T ss_pred CCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccC---cccCCEeECCCCCC
Confidence 999987 57889999999999999999999888899999999999999999999766655544 45999999999999
Q ss_pred cccCchhhhCCC-CCCEEeCcCCCCC
Q 040379 349 NGFTNNSIGQMS-KLRTLSLNGNSLI 373 (373)
Q Consensus 349 ~~~~~~~~~~l~-~L~~L~l~~n~lt 373 (373)
++..+..+..++ +|++|++++|+++
T Consensus 236 ~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 236 MTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred cccCHHHHHhhhccCCEEEccCCCee
Confidence 999998888885 9999999999873
No 43
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=3.5e-29 Score=236.18 Aligned_cols=237 Identities=22% Similarity=0.197 Sum_probs=180.4
Q ss_pred ecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCccc
Q 040379 100 TISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWL 179 (373)
Q Consensus 100 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~ 179 (373)
.+|..+. +++++|++++|.+++. .+..+.++++|++|++++|.+++..+..+.++++|++|++++|++.. .....+
T Consensus 57 ~iP~~~~--~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~ 132 (440)
T 3zyj_A 57 EVPDGIS--TNTRLLNLHENQIQII-KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT-IPNGAF 132 (440)
T ss_dssp SCCSCCC--TTCSEEECCSCCCCEE-CTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSS-CCTTTS
T ss_pred cCCCCCC--CCCcEEEccCCcCCee-CHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCe-eCHhHh
Confidence 4555443 6889999999999875 56788999999999999999987777888999999999999999842 333467
Q ss_pred CCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCC-CCCcccccCCCCCCccCEEECCCCcCCCCchhHHHh
Q 040379 180 SHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLP-PIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFN 258 (373)
Q Consensus 180 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~ 258 (373)
..+++|++|++++|.+...+ ...+..+++|++|++++|... ...+..+..+ ++|++|++++|.++ .+|. +.
T Consensus 133 ~~l~~L~~L~L~~N~i~~~~--~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l---~~L~~L~L~~n~l~-~~~~--~~ 204 (440)
T 3zyj_A 133 VYLSKLKELWLRNNPIESIP--SYAFNRIPSLRRLDLGELKRLSYISEGAFEGL---SNLRYLNLAMCNLR-EIPN--LT 204 (440)
T ss_dssp CSCSSCCEEECCSCCCCEEC--TTTTTTCTTCCEEECCCCTTCCEECTTTTTTC---SSCCEEECTTSCCS-SCCC--CT
T ss_pred hccccCceeeCCCCcccccC--HHHhhhCcccCEeCCCCCCCcceeCcchhhcc---cccCeecCCCCcCc-cccc--cC
Confidence 88899999999999887643 256788888999988885443 3333456666 88888888888887 4553 33
Q ss_pred ccccCcEEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCcc
Q 040379 259 ASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSL 338 (373)
Q Consensus 259 ~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L 338 (373)
.+++|+.|++++|.+++..|..+..+++|+.|++++|++++..+..+..+++|++|+|++|++++..+..+..+ ++|
T Consensus 205 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l---~~L 281 (440)
T 3zyj_A 205 PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL---HHL 281 (440)
T ss_dssp TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC---TTC
T ss_pred CCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc---cCC
Confidence 44558888888888887777778888888888888888887777778888888888888888875555444444 378
Q ss_pred CEEECcCCcCccc
Q 040379 339 KELYLENNRLNGF 351 (373)
Q Consensus 339 ~~L~L~~n~l~~~ 351 (373)
+.|+|++|++...
T Consensus 282 ~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 282 ERIHLHHNPWNCN 294 (440)
T ss_dssp CEEECCSSCEECS
T ss_pred CEEEcCCCCccCC
Confidence 8888888877543
No 44
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=3.4e-29 Score=237.02 Aligned_cols=237 Identities=22% Similarity=0.204 Sum_probs=173.9
Q ss_pred ecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCccc
Q 040379 100 TISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWL 179 (373)
Q Consensus 100 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~ 179 (373)
.+|..+. +++++|++++|.+++. .+..+.++++|++|++++|.+++..|..+.++++|++|++++|.+. ......+
T Consensus 68 ~iP~~~~--~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~ 143 (452)
T 3zyi_A 68 EVPQGIP--SNTRYLNLMENNIQMI-QADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAF 143 (452)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-BCCTTTS
T ss_pred ccCCCCC--CCccEEECcCCcCceE-CHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC-ccChhhh
Confidence 3454443 6889999999999875 6778899999999999999998777788899999999999999983 2333457
Q ss_pred CCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCC-cccccCCCCCCccCEEECCCCcCCCCchhHHHh
Q 040379 180 SHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIV-PLSLSNLNYSTSLQFLELSENNLTNSIYPWLFN 258 (373)
Q Consensus 180 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~ 258 (373)
..+++|++|++++|.+...+ ...+..+++|++|++++|...+.+ +..+..+ ++|++|++++|.+++ +|. +.
T Consensus 144 ~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l---~~L~~L~L~~n~l~~-~~~--~~ 215 (452)
T 3zyi_A 144 EYLSKLRELWLRNNPIESIP--SYAFNRVPSLMRLDLGELKKLEYISEGAFEGL---FNLKYLNLGMCNIKD-MPN--LT 215 (452)
T ss_dssp SSCTTCCEEECCSCCCCEEC--TTTTTTCTTCCEEECCCCTTCCEECTTTTTTC---TTCCEEECTTSCCSS-CCC--CT
T ss_pred cccCCCCEEECCCCCcceeC--HhHHhcCCcccEEeCCCCCCccccChhhccCC---CCCCEEECCCCcccc-ccc--cc
Confidence 88889999999999887643 256778888888888875433333 3345666 788888888888773 432 23
Q ss_pred ccccCcEEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCcc
Q 040379 259 ASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSL 338 (373)
Q Consensus 259 ~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L 338 (373)
.+++|+.|++++|.+++..|..+..+++|+.|++++|++++..+..+..+++|++|+|++|++++..+..+..+ ++|
T Consensus 216 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l---~~L 292 (452)
T 3zyi_A 216 PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL---RYL 292 (452)
T ss_dssp TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC---TTC
T ss_pred ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc---cCC
Confidence 34557777777777777667777777777777777777777667777777777777777777775444444333 377
Q ss_pred CEEECcCCcCccc
Q 040379 339 KELYLENNRLNGF 351 (373)
Q Consensus 339 ~~L~L~~n~l~~~ 351 (373)
+.|++++|++...
T Consensus 293 ~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 293 VELHLHHNPWNCD 305 (452)
T ss_dssp CEEECCSSCEECS
T ss_pred CEEEccCCCcCCC
Confidence 7777777776543
No 45
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=2.2e-29 Score=233.83 Aligned_cols=252 Identities=25% Similarity=0.246 Sum_probs=198.8
Q ss_pred CCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCC
Q 040379 107 QLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLT 186 (373)
Q Consensus 107 ~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 186 (373)
.++++++|+++++.++.. .+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.. ..+..+.++++|+
T Consensus 43 ~l~~l~~l~l~~~~l~~l-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEESEE-CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCchhhC-ChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCc-CCHHHhcCCCCCC
Confidence 578999999999998853 33346889999999999999997767789999999999999999943 3445689999999
Q ss_pred EEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhc-------
Q 040379 187 YLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNA------- 259 (373)
Q Consensus 187 ~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~------- 259 (373)
+|++++|.+...+. ..+..+++|++|++++|.+.+..+..+..+ ++|++|++++|.+++. +......
T Consensus 121 ~L~L~~n~l~~l~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~-~~~~l~~L~~L~l~ 194 (390)
T 3o6n_A 121 VLVLERNDLSSLPR--GIFHNTPKLTTLSMSNNNLERIEDDTFQAT---TSLQNLQLSSNRLTHV-DLSLIPSLFHANVS 194 (390)
T ss_dssp EEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCBCCTTTTSSC---TTCCEEECCSSCCSBC-CGGGCTTCSEEECC
T ss_pred EEECCCCccCcCCH--HHhcCCCCCcEEECCCCccCccChhhccCC---CCCCEEECCCCcCCcc-ccccccccceeecc
Confidence 99999999987532 446899999999999999998888888888 8999999999998743 2111111
Q ss_pred ------------------------------cccCcEEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCC
Q 040379 260 ------------------------------SSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMC 309 (373)
Q Consensus 260 ------------------------------~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 309 (373)
.++|+.|++++|.+++. ..+..+++|++|++++|.+++..|..+..++
T Consensus 195 ~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 272 (390)
T 3o6n_A 195 YNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 272 (390)
T ss_dssp SSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred cccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccc
Confidence 11355555555555532 4567788889999999988887788888888
Q ss_pred CCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCcccCchhhhCCCCCCEEeCcCCCCC
Q 040379 310 SLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLI 373 (373)
Q Consensus 310 ~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~lt 373 (373)
+|++|++++|++++ +|... ..+++|++|++++|++++. |..+..+++|++|++++|+++
T Consensus 273 ~L~~L~L~~n~l~~-~~~~~---~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~N~i~ 331 (390)
T 3o6n_A 273 RLERLYISNNRLVA-LNLYG---QPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIV 331 (390)
T ss_dssp SCCEEECCSSCCCE-EECSS---SCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCC
T ss_pred cCCEEECCCCcCcc-cCccc---CCCCCCCEEECCCCcceec-CccccccCcCCEEECCCCccc
Confidence 99999999998885 34333 3445899999999998854 556788899999999999874
No 46
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=7e-29 Score=234.10 Aligned_cols=230 Identities=24% Similarity=0.200 Sum_probs=190.5
Q ss_pred CcEEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCC
Q 040379 80 GHVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSA 159 (373)
Q Consensus 80 ~~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 159 (373)
..++.++++++ .+.+..+..|.++++|++|++++|.+++. .+..+.++++|++|++++|++++..+..+..+++
T Consensus 64 ~~l~~L~L~~n-----~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 137 (440)
T 3zyj_A 64 TNTRLLNLHEN-----QIQIIKVNSFKHLRHLEILQLSRNHIRTI-EIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSK 137 (440)
T ss_dssp TTCSEEECCSC-----CCCEECTTTTSSCSSCCEEECCSSCCCEE-CGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSS
T ss_pred CCCcEEEccCC-----cCCeeCHHHhhCCCCCCEEECCCCcCCcc-ChhhccCCccCCEEECCCCcCCeeCHhHhhcccc
Confidence 45677888775 77777778899999999999999999875 6678999999999999999999665667899999
Q ss_pred CCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccC
Q 040379 160 LQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQ 239 (373)
Q Consensus 160 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~ 239 (373)
|++|++++|.+.. .....+.++++|++|++++|...+.. ....+..+++|++|++++|.++.. | .+..+ ++|+
T Consensus 138 L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~l~~~~~l~~i-~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l---~~L~ 210 (440)
T 3zyj_A 138 LKELWLRNNPIES-IPSYAFNRIPSLRRLDLGELKRLSYI-SEGAFEGLSNLRYLNLAMCNLREI-P-NLTPL---IKLD 210 (440)
T ss_dssp CCEEECCSCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEE-CTTTTTTCSSCCEEECTTSCCSSC-C-CCTTC---SSCC
T ss_pred CceeeCCCCcccc-cCHHHhhhCcccCEeCCCCCCCccee-CcchhhcccccCeecCCCCcCccc-c-ccCCC---cccC
Confidence 9999999999842 33346889999999999985443321 124688899999999999998853 3 35555 8999
Q ss_pred EEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCC
Q 040379 240 FLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDN 319 (373)
Q Consensus 240 ~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 319 (373)
+|++++|.+++ +++..+..+++|+.|++++|++++..+..+..+++|+.|+|++|++++..+..+..+++|+.|+|++|
T Consensus 211 ~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 211 ELDLSGNHLSA-IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp EEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred EEECCCCccCc-cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCC
Confidence 99999999985 44444555667999999999999888888999999999999999999877888899999999999999
Q ss_pred cCcc
Q 040379 320 KLRG 323 (373)
Q Consensus 320 ~l~~ 323 (373)
.+..
T Consensus 290 p~~C 293 (440)
T 3zyj_A 290 PWNC 293 (440)
T ss_dssp CEEC
T ss_pred CccC
Confidence 8864
No 47
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=7.6e-29 Score=220.34 Aligned_cols=252 Identities=20% Similarity=0.157 Sum_probs=210.7
Q ss_pred CCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCC-CCCCCCCcccCCCCCCC
Q 040379 108 LHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNH-LFSAGNLDWLSHLSSLT 186 (373)
Q Consensus 108 l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-~~~~~~~~~~~~l~~L~ 186 (373)
.++|++|++++|.+++. .+..+..+++|++|++++|.+++..|..+..+++|++|++++|. + ....+..+..+++|+
T Consensus 31 ~~~l~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l-~~~~~~~~~~l~~L~ 108 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHV-PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL-RSVDPATFHGLGRLH 108 (285)
T ss_dssp CTTCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC-CCCCTTTTTTCTTCC
T ss_pred CCCceEEEeeCCcCCcc-CHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc-cccCHHHhcCCcCCC
Confidence 47899999999999974 55678999999999999999997778899999999999999998 6 334456788999999
Q ss_pred EEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEE
Q 040379 187 YLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLL 266 (373)
Q Consensus 187 ~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L 266 (373)
+|++++|.+.+. .+..+..+++|++|++++|.+++..+..+..+ ++|++|++++|.++ .++...+..+++|+.|
T Consensus 109 ~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L 182 (285)
T 1ozn_A 109 TLHLDRCGLQEL--GPGLFRGLAALQYLYLQDNALQALPDDTFRDL---GNLTHLFLHGNRIS-SVPERAFRGLHSLDRL 182 (285)
T ss_dssp EEECTTSCCCCC--CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC---TTCCEEECCSSCCC-EECTTTTTTCTTCCEE
T ss_pred EEECCCCcCCEE--CHhHhhCCcCCCEEECCCCcccccCHhHhccC---CCccEEECCCCccc-ccCHHHhcCccccCEE
Confidence 999999999875 34678899999999999999998777778887 99999999999998 5666555666779999
Q ss_pred EccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCC
Q 040379 267 GLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENN 346 (373)
Q Consensus 267 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n 346 (373)
++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+....+.. .... .++.+..+.+
T Consensus 183 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~---~l~~~~~~~~ 258 (285)
T 1ozn_A 183 LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWA---WLQKFRGSSS 258 (285)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHH---HHHHCCSEEC
T ss_pred ECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHH---HHHhcccccC
Confidence 99999999888999999999999999999999877778999999999999999998654321 1111 3555667788
Q ss_pred cCcccCchhhhC--CCCCCEEeCcCCC
Q 040379 347 RLNGFTNNSIGQ--MSKLRTLSLNGNS 371 (373)
Q Consensus 347 ~l~~~~~~~~~~--l~~L~~L~l~~n~ 371 (373)
.+....|..+.+ +..++..++.+|+
T Consensus 259 ~~~c~~p~~l~g~~l~~l~~~~l~~C~ 285 (285)
T 1ozn_A 259 EVPCSLPQRLAGRDLKRLAANDLQGCA 285 (285)
T ss_dssp CCBEEESGGGTTCBGGGSCGGGSCCC-
T ss_pred ccccCCchHhCCcChhhcCHHHhccCC
Confidence 888888877654 5677777777774
No 48
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=6.1e-28 Score=229.33 Aligned_cols=262 Identities=25% Similarity=0.366 Sum_probs=140.3
Q ss_pred CcEEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCC
Q 040379 80 GHVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSA 159 (373)
Q Consensus 80 ~~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 159 (373)
.+++.++++++ .+.+.. + +..+++|++|++++|.+.+. +. ++.+++|++|++++|.+++. +. +.++++
T Consensus 68 ~~L~~L~Ls~n-----~l~~~~-~-~~~l~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~ 135 (466)
T 1o6v_A 68 NNLTQINFSNN-----QLTDIT-P-LKNLTKLVDILMNNNQIADI--TP-LANLTNLTGLTLFNNQITDI-DP-LKNLTN 135 (466)
T ss_dssp TTCCEEECCSS-----CCCCCG-G-GTTCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCC-GG-GTTCTT
T ss_pred cCCCEEECCCC-----ccCCch-h-hhccccCCEEECCCCccccC--hh-hcCCCCCCEEECCCCCCCCC-hH-HcCCCC
Confidence 45677777765 333322 2 66677777777777776643 33 66677777777777766643 32 566666
Q ss_pred CCEEEccCCCCCCCCC------------------CcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCC
Q 040379 160 LQHLDLSLNHLFSAGN------------------LDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHL 221 (373)
Q Consensus 160 L~~L~L~~n~~~~~~~------------------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l 221 (373)
|++|++++|.+..... ...+.++++|++|++++|.+... ..+..+++|++|++++|.+
T Consensus 136 L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~l~~n~l 211 (466)
T 1o6v_A 136 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI----SVLAKLTNLESLIATNNQI 211 (466)
T ss_dssp CSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCC
T ss_pred CCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC----hhhccCCCCCEEEecCCcc
Confidence 6666666665532110 11244555666666666665543 2244555555555555555
Q ss_pred CCCCcccccCC-------------------CCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCcccccccccccc
Q 040379 222 PPIVPLSLSNL-------------------NYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFK 282 (373)
Q Consensus 222 ~~~~~~~~~~l-------------------~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 282 (373)
.+..+ ++.+ ..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++..+ +.
T Consensus 212 ~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~--~~ 284 (466)
T 1o6v_A 212 SDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISP--LA 284 (466)
T ss_dssp CCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCCCCGG--GT
T ss_pred ccccc--ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh---hhcCCCCCEEECCCCccCcccc--cc
Confidence 54433 2222 011444444444444443221 2233335555555555543222 44
Q ss_pred CCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCcccCchhhhCCCCC
Q 040379 283 HMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQMSKL 362 (373)
Q Consensus 283 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 362 (373)
.+++|+.|++++|++++..+ +..+++|++|++++|++++..| +. .+++|+.|++++|++++. ..+.++++|
T Consensus 285 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~---~l~~L~~L~l~~n~l~~~--~~l~~l~~L 355 (466)
T 1o6v_A 285 GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VS---SLTKLQRLFFYNNKVSDV--SSLANLTNI 355 (466)
T ss_dssp TCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GG---GCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred CCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hc---cCccCCEeECCCCccCCc--hhhccCCCC
Confidence 55555555555555554322 4555666666666666654433 22 233666666666666654 246667777
Q ss_pred CEEeCcCCCCC
Q 040379 363 RTLSLNGNSLI 373 (373)
Q Consensus 363 ~~L~l~~n~lt 373 (373)
+.|++++|+++
T Consensus 356 ~~L~l~~n~l~ 366 (466)
T 1o6v_A 356 NWLSAGHNQIS 366 (466)
T ss_dssp CEEECCSSCCC
T ss_pred CEEeCCCCccC
Confidence 77777777653
No 49
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=5.3e-29 Score=243.66 Aligned_cols=252 Identities=25% Similarity=0.244 Sum_probs=203.1
Q ss_pred CCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCC
Q 040379 107 QLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLT 186 (373)
Q Consensus 107 ~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 186 (373)
.+.+++.+++++|.+... .+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.. ..+..+..+++|+
T Consensus 49 ~l~~l~~l~l~~~~l~~l-p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEESEE-CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCCCCCc-CHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC-CCHHHHcCCCCCC
Confidence 478999999999998864 44457889999999999999998777799999999999999999943 3445679999999
Q ss_pred EEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhc-------
Q 040379 187 YLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNA------- 259 (373)
Q Consensus 187 ~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~------- 259 (373)
+|++++|.+...+. ..++.+++|++|++++|.+.+..|..++.+ ++|++|++++|.+++. +...+..
T Consensus 127 ~L~L~~n~l~~l~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l---~~L~~L~L~~N~l~~~-~~~~l~~L~~L~l~ 200 (597)
T 3oja_B 127 VLVLERNDLSSLPR--GIFHNTPKLTTLSMSNNNLERIEDDTFQAT---TSLQNLQLSSNRLTHV-DLSLIPSLFHANVS 200 (597)
T ss_dssp EEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCBCCTTTTTTC---TTCCEEECTTSCCSBC-CGGGCTTCSEEECC
T ss_pred EEEeeCCCCCCCCH--HHhccCCCCCEEEeeCCcCCCCChhhhhcC---CcCcEEECcCCCCCCc-Chhhhhhhhhhhcc
Confidence 99999999987532 457899999999999999999888888888 9999999999998853 2211110
Q ss_pred ------------------------------cccCcEEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCC
Q 040379 260 ------------------------------SSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMC 309 (373)
Q Consensus 260 ------------------------------~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 309 (373)
.++|+.|++++|.+++ +..+..+++|+.|++++|.+++..|..+..++
T Consensus 201 ~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 278 (597)
T 3oja_B 201 YNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 278 (597)
T ss_dssp SSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred cCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCcc
Confidence 1135555556665554 35678888999999999999888888888999
Q ss_pred CCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCcccCchhhhCCCCCCEEeCcCCCCC
Q 040379 310 SLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLI 373 (373)
Q Consensus 310 ~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~lt 373 (373)
+|++|+|++|++++ +|..+ ..+++|+.|+|++|.+++ +|..+..+++|+.|++++|+++
T Consensus 279 ~L~~L~Ls~N~l~~-l~~~~---~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~ 337 (597)
T 3oja_B 279 RLERLYISNNRLVA-LNLYG---QPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIV 337 (597)
T ss_dssp SCCEEECTTSCCCE-EECSS---SCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCC
T ss_pred CCCEEECCCCCCCC-CCccc---ccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCC
Confidence 99999999999885 44433 334589999999999985 5556788999999999999874
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.5e-28 Score=232.69 Aligned_cols=230 Identities=23% Similarity=0.176 Sum_probs=192.8
Q ss_pred CcEEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCC
Q 040379 80 GHVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSA 159 (373)
Q Consensus 80 ~~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 159 (373)
..++.|+++++ .+.+..+..|.++++|++|++++|.+++. .+..+.++++|++|++++|++++..+..+..+++
T Consensus 75 ~~l~~L~L~~n-----~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 148 (452)
T 3zyi_A 75 SNTRYLNLMEN-----NIQMIQADTFRHLHHLEVLQLGRNSIRQI-EVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSK 148 (452)
T ss_dssp TTCSEEECCSS-----CCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTT
T ss_pred CCccEEECcCC-----cCceECHHHcCCCCCCCEEECCCCccCCc-ChhhccCcccCCEEECCCCcCCccChhhhcccCC
Confidence 46788888876 78888888999999999999999999875 6788999999999999999999666667899999
Q ss_pred CCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccC-CCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCcc
Q 040379 160 LQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNL-SRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSL 238 (373)
Q Consensus 160 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L 238 (373)
|++|++++|.+. ......+.++++|++|++++|.. ...+ ...+..+++|++|++++|.+++. | .+..+ ++|
T Consensus 149 L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~--~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l---~~L 220 (452)
T 3zyi_A 149 LRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYIS--EGAFEGLFNLKYLNLGMCNIKDM-P-NLTPL---VGL 220 (452)
T ss_dssp CCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEEC--TTTTTTCTTCCEEECTTSCCSSC-C-CCTTC---TTC
T ss_pred CCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccC--hhhccCCCCCCEEECCCCccccc-c-ccccc---ccc
Confidence 999999999994 23334688999999999998543 3322 24688899999999999999864 3 35555 899
Q ss_pred CEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcC
Q 040379 239 QFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISD 318 (373)
Q Consensus 239 ~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 318 (373)
++|++++|.+++..| ..+..+++|+.|++++|++++..+..+..+++|+.|+|++|++++..+..+..+++|++|++++
T Consensus 221 ~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 221 EELEMSGNHFPEIRP-GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299 (452)
T ss_dssp CEEECTTSCCSEECG-GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCS
T ss_pred cEEECcCCcCcccCc-ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccC
Confidence 999999999985444 4455566799999999999988888999999999999999999987778889999999999999
Q ss_pred CcCccc
Q 040379 319 NKLRGH 324 (373)
Q Consensus 319 n~l~~~ 324 (373)
|.+...
T Consensus 300 Np~~Cd 305 (452)
T 3zyi_A 300 NPWNCD 305 (452)
T ss_dssp SCEECS
T ss_pred CCcCCC
Confidence 988743
No 51
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=2.4e-30 Score=233.51 Aligned_cols=250 Identities=22% Similarity=0.246 Sum_probs=205.6
Q ss_pred CcceecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCC
Q 040379 96 PLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGN 175 (373)
Q Consensus 96 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~ 175 (373)
.+...+...+..+++|++|++++|.+++. .|..+..+++|++|++++|.+++..| +..+++|++|++++|.+..
T Consensus 21 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~--- 94 (317)
T 3o53_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE--- 94 (317)
T ss_dssp THHHHHHHHHTTGGGCSEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE---
T ss_pred chhhhHHHHhccCCCCCEEECcCCccCcC-CHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc---
Confidence 55544445556678999999999999975 67889999999999999999986554 8899999999999999832
Q ss_pred CcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhH
Q 040379 176 LDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPW 255 (373)
Q Consensus 176 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~ 255 (373)
+...++|++|++++|.+.+.+ ...+++|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..
T Consensus 95 ---l~~~~~L~~L~l~~n~l~~~~-----~~~~~~L~~L~l~~N~l~~~~~~~~~~l---~~L~~L~Ls~N~l~~~~~~~ 163 (317)
T 3o53_A 95 ---LLVGPSIETLHAANNNISRVS-----CSRGQGKKNIYLANNKITMLRDLDEGCR---SRVQYLDLKLNEIDTVNFAE 163 (317)
T ss_dssp ---EEECTTCCEEECCSSCCSEEE-----ECCCSSCEEEECCSSCCCSGGGBCTGGG---SSEEEEECTTSCCCEEEGGG
T ss_pred ---ccCCCCcCEEECCCCccCCcC-----ccccCCCCEEECCCCCCCCccchhhhcc---CCCCEEECCCCCCCcccHHH
Confidence 234589999999999988742 2347899999999999998878788887 99999999999999766666
Q ss_pred HHhccccCcEEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCC
Q 040379 256 LFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRF 335 (373)
Q Consensus 256 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~ 335 (373)
+...+++|++|++++|.+++. +. ...+++|++|++++|.+++ +|..+..+++|++|++++|+++ .+|..+. .+
T Consensus 164 ~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~---~l 236 (317)
T 3o53_A 164 LAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALR---FS 236 (317)
T ss_dssp GGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCC---CC
T ss_pred HhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhh---cC
Confidence 665667799999999999854 33 3458999999999999995 4555889999999999999999 4666554 44
Q ss_pred CccCEEECcCCcCc-ccCchhhhCCCCCCEEeCcC
Q 040379 336 SSLKELYLENNRLN-GFTNNSIGQMSKLRTLSLNG 369 (373)
Q Consensus 336 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~ 369 (373)
++|+.|++++|+++ +..+..+..+++|+.+++++
T Consensus 237 ~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp TTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 59999999999998 66777888888888877763
No 52
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=1.5e-27 Score=226.65 Aligned_cols=257 Identities=26% Similarity=0.379 Sum_probs=187.1
Q ss_pred CcEEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCccc-------
Q 040379 80 GHVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPS------- 152 (373)
Q Consensus 80 ~~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~------- 152 (373)
.+++.++++++ .+.+..+ +..+++|++|++++|.+++. +. +..+++|++|++++|.+.+ ++.
T Consensus 90 ~~L~~L~l~~n-----~l~~~~~--~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L 158 (466)
T 1o6v_A 90 TKLVDILMNNN-----QIADITP--LANLTNLTGLTLFNNQITDI--DP-LKNLTNLNRLELSSNTISD-ISALSGLTSL 158 (466)
T ss_dssp TTCCEEECCSS-----CCCCCGG--GTTCTTCCEEECCSSCCCCC--GG-GTTCTTCSEEEEEEEEECC-CGGGTTCTTC
T ss_pred ccCCEEECCCC-----ccccChh--hcCCCCCCEEECCCCCCCCC--hH-HcCCCCCCEEECCCCccCC-ChhhccCCcc
Confidence 46778888776 4443332 77788888888888877753 32 6667777777777666553 211
Q ss_pred -------------ccCCCCCCCEEEccCCCCCCCCCCcccCCC----------------------CCCCEEEccCccCCC
Q 040379 153 -------------HLGNLSALQHLDLSLNHLFSAGNLDWLSHL----------------------SSLTYLDLGSNNLSR 197 (373)
Q Consensus 153 -------------~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l----------------------~~L~~L~l~~n~~~~ 197 (373)
.+.++++|++|++++|.+... +.+..+ ++|++|++++|.+.+
T Consensus 159 ~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~ 235 (466)
T 1o6v_A 159 QQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI---SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD 235 (466)
T ss_dssp SEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC
T ss_pred cEeecCCcccCchhhccCCCCCEEECcCCcCCCC---hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCccc
Confidence 144555666666666665221 223444 445555555554443
Q ss_pred CcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccc
Q 040379 198 STDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSI 277 (373)
Q Consensus 198 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 277 (373)
. ..+..+++|++|++++|.+.+..+ +..+ ++|++|++++|.+++ +++ +..+++|+.|++++|++++..
T Consensus 236 ~----~~l~~l~~L~~L~l~~n~l~~~~~--~~~l---~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~L~~n~l~~~~ 303 (466)
T 1o6v_A 236 I----GTLASLTNLTDLDLANNQISNLAP--LSGL---TKLTELKLGANQISN-ISP--LAGLTALTNLELNENQLEDIS 303 (466)
T ss_dssp C----GGGGGCTTCSEEECCSSCCCCCGG--GTTC---TTCSEEECCSSCCCC-CGG--GTTCTTCSEEECCSSCCSCCG
T ss_pred c----hhhhcCCCCCEEECCCCccccchh--hhcC---CCCCEEECCCCccCc-ccc--ccCCCccCeEEcCCCcccCch
Confidence 2 245667788888888888876544 5555 999999999999985 443 455667999999999998654
Q ss_pred cccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCcccCchhhh
Q 040379 278 PVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIG 357 (373)
Q Consensus 278 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~ 357 (373)
+ +..+++|+.|++++|++++..| +..+++|++|++++|++++. .. +..+++|+.|++++|++++..| +.
T Consensus 304 ~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~---l~~l~~L~~L~l~~n~l~~~~~--~~ 372 (466)
T 1o6v_A 304 P--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SS---LANLTNINWLSAGHNQISDLTP--LA 372 (466)
T ss_dssp G--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GG---GTTCTTCCEEECCSSCCCBCGG--GT
T ss_pred h--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hh---hccCCCCCEEeCCCCccCccch--hh
Confidence 4 7899999999999999997666 67899999999999999964 23 4556699999999999999877 78
Q ss_pred CCCCCCEEeCcCCCCC
Q 040379 358 QMSKLRTLSLNGNSLI 373 (373)
Q Consensus 358 ~l~~L~~L~l~~n~lt 373 (373)
.+++|+.|++++|+++
T Consensus 373 ~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 373 NLTRITQLGLNDQAWT 388 (466)
T ss_dssp TCTTCCEEECCCEEEE
T ss_pred cCCCCCEEeccCCccc
Confidence 9999999999999763
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=8.2e-29 Score=226.93 Aligned_cols=280 Identities=21% Similarity=0.227 Sum_probs=220.1
Q ss_pred ceEecCCCCcEEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcc
Q 040379 72 GVGCSNRTGHVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIP 151 (373)
Q Consensus 72 ~v~c~~~~~~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p 151 (373)
...|... .+ .+.+++ .++ .+|..+. ++|++|++++|.+++. .+..+.++++|++|++++|++++..|
T Consensus 27 ~~~C~~~--~~--c~~~~~-----~l~-~iP~~~~--~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (353)
T 2z80_A 27 SLSCDRN--GI--CKGSSG-----SLN-SIPSGLT--EAVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTSNGINTIEE 93 (353)
T ss_dssp CCEECTT--SE--EECCST-----TCS-SCCTTCC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECT
T ss_pred CCCCCCC--eE--eeCCCC-----Ccc-ccccccc--ccCcEEECCCCcCccc-CHHHhccCCCCCEEECCCCccCccCH
Confidence 4667532 22 566654 444 4565543 5899999999999864 45578999999999999999997778
Q ss_pred cccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCC-CCCCCccccc
Q 040379 152 SHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCH-LPPIVPLSLS 230 (373)
Q Consensus 152 ~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~ 230 (373)
..+.++++|++|++++|++.. .....+.++++|++|++++|.+...+. ...+..+++|++|++++|. +....+..+.
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 171 (353)
T 2z80_A 94 DSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGE-TSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171 (353)
T ss_dssp TTTTTCTTCCEEECCSSCCSS-CCHHHHTTCTTCSEEECTTCCCSSSCS-SCSCTTCTTCCEEEEEESSSCCEECTTTTT
T ss_pred hhcCCCCCCCEEECCCCcCCc-CCHhHhCCCccCCEEECCCCCCcccCc-hhhhccCCCCcEEECCCCccccccCHHHcc
Confidence 889999999999999999942 222348899999999999999986421 1368899999999999994 6666667788
Q ss_pred CCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEEEccCCcCcccccccc---cC
Q 040379 231 NLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFF---GN 307 (373)
Q Consensus 231 ~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l---~~ 307 (373)
.+ ++|++|++++|.+++..|..+. .+++|++|++++|.++...+..+..+++|+.|++++|.+++..+..+ ..
T Consensus 172 ~l---~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~ 247 (353)
T 2z80_A 172 GL---TFLEELEIDASDLQSYEPKSLK-SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET 247 (353)
T ss_dssp TC---CEEEEEEEEETTCCEECTTTTT-TCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------C
T ss_pred CC---CCCCEEECCCCCcCccCHHHHh-ccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccc
Confidence 87 9999999999999865555544 45569999999999974444445668999999999999997655443 34
Q ss_pred CCCCCeEeCcCCcCcc----cCchhhhccCCCCccCEEECcCCcCcccCchhhhCCCCCCEEeCcCCCCC
Q 040379 308 MCSLTMLNISDNKLRG----HFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLI 373 (373)
Q Consensus 308 l~~L~~L~L~~n~l~~----~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~lt 373 (373)
.+.++.++++++.+++ .+|+.+..++ +|++|++++|+++..++..+.++++|++|++++|+++
T Consensus 248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~---~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 248 NSLIKKFTFRNVKITDESLFQVMKLLNQIS---GLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp CCCCCEEEEESCBCCHHHHHHHHHHHHTCT---TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cchhhccccccccccCcchhhhHHHHhccc---CCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence 6788999999999886 3555565554 9999999999999766555689999999999999874
No 54
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=2.5e-30 Score=232.86 Aligned_cols=251 Identities=20% Similarity=0.183 Sum_probs=196.4
Q ss_pred cccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCcc-ccCcccccC-------CCCCCCEEEccCCCCCCCCC
Q 040379 104 ALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEF-EGPIPSHLG-------NLSALQHLDLSLNHLFSAGN 175 (373)
Q Consensus 104 ~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l-~~~~p~~l~-------~l~~L~~L~L~~n~~~~~~~ 175 (373)
.++..++|++|++++|.+ . +|..+... |++|++++|.+ .+.+|..+. ++++|++|++++|.+.....
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~-~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--A-DLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--C-CCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred EEccCCCceeEeeccccc--c-cHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 345667888899999988 2 66655443 88889999888 445666655 78999999999999843333
Q ss_pred Ccc-cCCCCCCCEEEccCccCCCCcchhhhhCCC-----CCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCC
Q 040379 176 LDW-LSHLSSLTYLDLGSNNLSRSTDWLQVVGNL-----PLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLT 249 (373)
Q Consensus 176 ~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~ 249 (373)
... +..+++|++|++++|.+.+.+ ..++.+ ++|++|++++|.+.+..+..++.+ ++|++|++++|.+.
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l---~~L~~L~Ls~N~l~ 186 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATRD---AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF---PALSTLDLSDNPEL 186 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSSS---SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC---SSCCEEECCSCTTC
T ss_pred HHHHHhcCCCccEEEccCCCCcchh---HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC---CCCCEEECCCCCcC
Confidence 332 288999999999999988753 344444 899999999999998888888888 99999999999987
Q ss_pred CCc--hhHH-HhccccCcEEEccCccccc--ccc-ccccCCCCCCEEEccCCcCccccc-ccccCCCCCCeEeCcCCcCc
Q 040379 250 NSI--YPWL-FNASSNLVLLGLDSNLLRG--SIP-VAFKHMVSVSFLGLASNEFEGGVP-DFFGNMCSLTMLNISDNKLR 322 (373)
Q Consensus 250 ~~~--~~~~-~~~~~~L~~L~l~~n~l~~--~~~-~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~ 322 (373)
+.+ +..+ +..+++|++|++++|++++ .++ ..+..+++|++|++++|.+++..| ..+..+++|++|++++|+++
T Consensus 187 ~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 187 GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp HHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred cchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence 653 3232 2456679999999999983 223 344678999999999999998664 45667899999999999998
Q ss_pred ccCchhhhccCCCCccCEEECcCCcCcccCchhhhCCCCCCEEeCcCCCCC
Q 040379 323 GHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLI 373 (373)
Q Consensus 323 ~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~lt 373 (373)
.+|..+. ++|++|++++|++++. |. +..+++|++|++++|+++
T Consensus 267 -~ip~~~~-----~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 267 -QVPKGLP-----AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp -SCCSSCC-----SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred -hhhhhcc-----CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 7776553 4899999999999987 54 889999999999999985
No 55
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=1.9e-27 Score=224.71 Aligned_cols=238 Identities=24% Similarity=0.255 Sum_probs=145.2
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCC
Q 040379 105 LLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSS 184 (373)
Q Consensus 105 l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~ 184 (373)
++.+++|++|++++|.+++. + ++.+++|++|++++|++++ +| ++.+++|++|++++|++... .+..+++
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~~--~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l----~l~~l~~ 149 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTNL--D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI----DVSHNTQ 149 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCC--C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC----CCTTCTT
T ss_pred cccCCCCCEEECcCCCCcee--e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee----ccccCCc
Confidence 44555555555555555532 1 4455555555555555553 33 45555555555555555321 1455556
Q ss_pred CCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCc
Q 040379 185 LTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLV 264 (373)
Q Consensus 185 L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~ 264 (373)
|++|++++|...+. + .++.+++|++|++++|.+++. | +..+ ++|++|++++|.+++. + +..+++|+
T Consensus 150 L~~L~l~~n~~~~~--~--~~~~l~~L~~L~ls~n~l~~l-~--l~~l---~~L~~L~l~~N~l~~~-~---l~~l~~L~ 215 (457)
T 3bz5_A 150 LTELDCHLNKKITK--L--DVTPQTQLTTLDCSFNKITEL-D--VSQN---KLLNRLNCDTNNITKL-D---LNQNIQLT 215 (457)
T ss_dssp CCEEECTTCSCCCC--C--CCTTCTTCCEEECCSSCCCCC-C--CTTC---TTCCEEECCSSCCSCC-C---CTTCTTCS
T ss_pred CCEEECCCCCcccc--c--ccccCCcCCEEECCCCcccee-c--cccC---CCCCEEECcCCcCCee-c---cccCCCCC
Confidence 66666665533321 1 355667777777777777763 3 4444 7788888888877743 2 33445688
Q ss_pred EEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCC-----------------------------CCCCeEe
Q 040379 265 LLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNM-----------------------------CSLTMLN 315 (373)
Q Consensus 265 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-----------------------------~~L~~L~ 315 (373)
.|++++|++++ +| ++.+++|+.|++++|++++..+..+..+ ++|++|+
T Consensus 216 ~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~ 292 (457)
T 3bz5_A 216 FLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELD 292 (457)
T ss_dssp EEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCC
T ss_pred EEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEE
Confidence 88888888886 55 7778888888888888876544333322 3444444
Q ss_pred CcCCcCcccCchhhh-----ccCCCCccCEEECcCCcCcccCchhhhCCCCCCEEeCcCCCCC
Q 040379 316 ISDNKLRGHFPELIQ-----NLSRFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLI 373 (373)
Q Consensus 316 L~~n~l~~~~p~~~~-----~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~lt 373 (373)
+++|...+.+|.... .+..+++|++|++++|++++. + ++.+++|+.|++++|+|+
T Consensus 293 Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 293 VTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCC
T ss_pred CCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCC
Confidence 444444444332211 133556888888888888884 2 778888999999888874
No 56
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=1.4e-27 Score=235.21 Aligned_cols=142 Identities=30% Similarity=0.279 Sum_probs=119.3
Q ss_pred ecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCccc
Q 040379 100 TISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWL 179 (373)
Q Consensus 100 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~ 179 (373)
.+|..+. +++++|+|++|.|++. .+..|.++++|++|+|++|++++..|..|.++++|++|+|++|++. ......|
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f 120 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAF 120 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGG
T ss_pred ccCCCCC--cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHh
Confidence 3454332 4789999999999964 5678999999999999999999766778999999999999999993 2334578
Q ss_pred CCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCC-CcccccCCCCCCccCEEECCCCcCCC
Q 040379 180 SHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPI-VPLSLSNLNYSTSLQFLELSENNLTN 250 (373)
Q Consensus 180 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~~~~L~~L~ls~n~l~~ 250 (373)
.++++|++|++++|++.+.+. ..++++++|++|++++|.+.+. .|..++.+ ++|++|++++|.+++
T Consensus 121 ~~L~~L~~L~Ls~N~l~~l~~--~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l---~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 121 SGLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFKLPEYFSNL---TNLEHLDLSSNKIQS 187 (635)
T ss_dssp TTCTTCCEEECTTSCCCCSTT--CCCTTCTTCCEEECCSSCCCCCCCCGGGGGC---TTCCEEECCSSCCCE
T ss_pred cCCCCCCEEECCCCcCCCCCh--hhhhcCcccCeeccccCccccCCCchhhccc---hhhhhhcccCccccc
Confidence 999999999999999988543 5689999999999999999764 57778888 899999999988764
No 57
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=8.2e-31 Score=236.06 Aligned_cols=269 Identities=21% Similarity=0.217 Sum_probs=208.7
Q ss_pred CCCCCCCCCCCCCcccceEecCCCCcEEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCCccccC----
Q 040379 56 SSWGPEDEKRDCCKWTGVGCSNRTGHVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIG---- 131 (373)
Q Consensus 56 ~~w~~~~~~~~~c~w~~v~c~~~~~~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~---- 131 (373)
..|. ....|+.+..+.......+++.++++++ .+ .+|..+... |++|++++|.+....+|..+.
T Consensus 22 ~~~~---~~~~c~~~~~~~~~~~~~~L~~l~l~~n-----~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~ 89 (312)
T 1wwl_A 22 PDWS---SAFNCLGAADVELYGGGRSLEYLLKRVD-----TE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGAL 89 (312)
T ss_dssp CCGG---GGGGSSSCSEEEEEEEEEECTTHHHHCC-----TT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHH
T ss_pred cchH---HHhhhhccccEEEEccCCCceeEeeccc-----cc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHH
Confidence 4565 2345555554443222234445555554 55 667666554 889999999985434676665
Q ss_pred ---CCCCCCEEeCcCCccccCccccc--CCCCCCCEEEccCCCCCCCCCCcccCCC-----CCCCEEEccCccCCCCcch
Q 040379 132 ---SLTKLSYLDLSFAEFEGPIPSHL--GNLSALQHLDLSLNHLFSAGNLDWLSHL-----SSLTYLDLGSNNLSRSTDW 201 (373)
Q Consensus 132 ---~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~L~~n~~~~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~~ 201 (373)
.+++|++|++++|++++.+|..+ ..+++|++|++++|.+... +..+..+ ++|++|++++|++.+.+
T Consensus 90 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~~~~~~L~~L~L~~N~l~~~~-- 165 (312)
T 1wwl_A 90 RVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR--DAWLAELQQWLKPGLKVLSIAQAHSLNFS-- 165 (312)
T ss_dssp HHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS--SSHHHHHHTTCCTTCCEEEEESCSCCCCC--
T ss_pred HhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch--hHHHHHHHHhhcCCCcEEEeeCCCCccch--
Confidence 78999999999999999899876 8999999999999999543 4555555 99999999999998853
Q ss_pred hhhhCCCCCCcEEEccCCCCCCCC--cccc--cCCCCCCccCEEECCCCcCCC--CchhHHHhccccCcEEEccCccccc
Q 040379 202 LQVVGNLPLLTTLYLYRCHLPPIV--PLSL--SNLNYSTSLQFLELSENNLTN--SIYPWLFNASSNLVLLGLDSNLLRG 275 (373)
Q Consensus 202 ~~~~~~l~~L~~L~l~~n~l~~~~--~~~~--~~l~~~~~L~~L~ls~n~l~~--~~~~~~~~~~~~L~~L~l~~n~l~~ 275 (373)
+..++.+++|++|++++|.+.+.. +..+ ..+ ++|++|++++|.+++ .++..++..+++|+.|++++|++++
T Consensus 166 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l---~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 242 (312)
T 1wwl_A 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKF---PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242 (312)
T ss_dssp TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC---TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS
T ss_pred HHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC---CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc
Confidence 378899999999999999987642 3333 566 999999999999983 3444566666789999999999998
Q ss_pred ccc-ccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCccc
Q 040379 276 SIP-VAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGF 351 (373)
Q Consensus 276 ~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~ 351 (373)
..| ..+..+++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +. .+++|++|++++|++++.
T Consensus 243 ~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~---~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 243 AAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PD---ELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp SCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TT---TSCEEEEEECTTCTTTCC
T ss_pred ccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-Hh---hCCCCCEEeccCCCCCCC
Confidence 765 45677899999999999999 6777666 8999999999999965 54 44 445999999999999864
No 58
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=3e-27 Score=223.41 Aligned_cols=251 Identities=23% Similarity=0.254 Sum_probs=152.6
Q ss_pred CcEEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCC
Q 040379 80 GHVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSA 159 (373)
Q Consensus 80 ~~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 159 (373)
.+++.++++++ .+.+. + ++.+++|++|++++|.+++. + ++.+++|++|++++|++++ ++ ++.+++
T Consensus 85 ~~L~~L~Ls~N-----~l~~~-~--~~~l~~L~~L~L~~N~l~~l--~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~ 149 (457)
T 3bz5_A 85 TNLTYLACDSN-----KLTNL-D--VTPLTKLTYLNCDTNKLTKL--D--VSQNPLLTYLNCARNTLTE-ID--VSHNTQ 149 (457)
T ss_dssp TTCSEEECCSS-----CCSCC-C--CTTCTTCCEEECCSSCCSCC--C--CTTCTTCCEEECTTSCCSC-CC--CTTCTT
T ss_pred CCCCEEECcCC-----CCcee-e--cCCCCcCCEEECCCCcCCee--c--CCCCCcCCEEECCCCccce-ec--cccCCc
Confidence 35566666665 44432 2 67788888888888888753 3 6778888888888888875 33 666677
Q ss_pred CCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccC
Q 040379 160 LQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQ 239 (373)
Q Consensus 160 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~ 239 (373)
|++|++++|..... . .+..+++|++|++++|.+++.+ ++.+++|++|++++|.+++. .++.+ ++|+
T Consensus 150 L~~L~l~~n~~~~~--~-~~~~l~~L~~L~ls~n~l~~l~-----l~~l~~L~~L~l~~N~l~~~---~l~~l---~~L~ 215 (457)
T 3bz5_A 150 LTELDCHLNKKITK--L-DVTPQTQLTTLDCSFNKITELD-----VSQNKLLNRLNCDTNNITKL---DLNQN---IQLT 215 (457)
T ss_dssp CCEEECTTCSCCCC--C-CCTTCTTCCEEECCSSCCCCCC-----CTTCTTCCEEECCSSCCSCC---CCTTC---TTCS
T ss_pred CCEEECCCCCcccc--c-ccccCCcCCEEECCCCccceec-----cccCCCCCEEECcCCcCCee---ccccC---CCCC
Confidence 77777777643111 1 2455566666666666655521 34445555555555544442 12233 4444
Q ss_pred EEECCCCcCCCCchhHHHhccccCcEEEccCcccc-------------------------------ccccccccCCCCCC
Q 040379 240 FLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLR-------------------------------GSIPVAFKHMVSVS 288 (373)
Q Consensus 240 ~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~-------------------------------~~~~~~l~~l~~L~ 288 (373)
+|++++|++++ +| ...+++|+.|++++|+++ +.+| ++.+++|+
T Consensus 216 ~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~ 289 (457)
T 3bz5_A 216 FLDCSSNKLTE-ID---VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIK 289 (457)
T ss_dssp EEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCC
T ss_pred EEECcCCcccc-cC---ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCC
Confidence 44444444443 32 122233444444444444 3333 34557777
Q ss_pred EEEccCCcCcccccc--------cccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCcccCchhhh---
Q 040379 289 FLGLASNEFEGGVPD--------FFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIG--- 357 (373)
Q Consensus 289 ~L~L~~n~l~~~~~~--------~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~--- 357 (373)
.|++++|...+.+|. .++.+++|++|++++|++++. + +..+++|+.|++++|++++.. .+.
T Consensus 290 ~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~-----l~~l~~L~~L~l~~N~l~~l~--~L~~L~ 361 (457)
T 3bz5_A 290 ELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D-----VSHNTKLKSLSCVNAHIQDFS--SVGKIP 361 (457)
T ss_dssp CCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C-----CTTCTTCSEEECCSSCCCBCT--TGGGSS
T ss_pred EEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c-----cccCCcCcEEECCCCCCCCcc--cccccc
Confidence 888888876555443 255678999999999999973 2 456669999999999998742 122
Q ss_pred ----------CCCCCCEEeCcCCCCC
Q 040379 358 ----------QMSKLRTLSLNGNSLI 373 (373)
Q Consensus 358 ----------~l~~L~~L~l~~n~lt 373 (373)
.+..|+.+++++|+++
T Consensus 362 l~~n~l~g~~~~~~l~~l~l~~N~l~ 387 (457)
T 3bz5_A 362 ALNNNFEAEGQTITMPKETLTNNSLT 387 (457)
T ss_dssp GGGTSEEEEEEEEECCCBCCBTTBEE
T ss_pred ccCCcEEecceeeecCccccccCcEE
Confidence 2245677888888763
No 59
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=5.4e-29 Score=237.30 Aligned_cols=238 Identities=23% Similarity=0.250 Sum_probs=199.0
Q ss_pred CCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCC
Q 040379 107 QLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLT 186 (373)
Q Consensus 107 ~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 186 (373)
.+++|++|++++|.+++. .|..++.+++|++|++++|.+++..| +..+++|++|++++|.+.. +...++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~------l~~~~~L~ 102 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE------LLVGPSIE 102 (487)
T ss_dssp TGGGCCEEECCSSCCCCC-CGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE------EEECTTCC
T ss_pred cCCCccEEEeeCCcCCCC-CHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC------CCCCCCcC
Confidence 345899999999999985 77889999999999999999987655 8999999999999999832 22348999
Q ss_pred EEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEE
Q 040379 187 YLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLL 266 (373)
Q Consensus 187 ~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L 266 (373)
+|++++|.+.+.+ ...+++|+.|++++|.+++..|..++.+ ++|++|++++|.+++..|..+...+++|+.|
T Consensus 103 ~L~L~~N~l~~~~-----~~~l~~L~~L~L~~N~l~~~~~~~~~~l---~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 103 TLHAANNNISRVS-----CSRGQGKKNIYLANNKITMLRDLDEGCR---SRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174 (487)
T ss_dssp EEECCSSCCCCEE-----ECCCSSCEEEECCSSCCCSGGGBCGGGG---SSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred EEECcCCcCCCCC-----ccccCCCCEEECCCCCCCCCCchhhcCC---CCCCEEECCCCCCCCcChHHHhhhCCcccEE
Confidence 9999999998743 2357899999999999999888888888 9999999999999987777777666779999
Q ss_pred EccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCC
Q 040379 267 GLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENN 346 (373)
Q Consensus 267 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n 346 (373)
++++|.+++. |. ...+++|+.|+|++|.+++..| .+..+++|+.|++++|.+++ +|..+. .+++|+.|++++|
T Consensus 175 ~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~---~l~~L~~L~l~~N 247 (487)
T 3oja_A 175 NLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALR---FSQNLEHFDLRGN 247 (487)
T ss_dssp ECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCC---CCTTCCEEECTTC
T ss_pred ecCCCccccc-cc-cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhc---cCCCCCEEEcCCC
Confidence 9999999865 32 3468999999999999996444 58889999999999999995 666544 4459999999999
Q ss_pred cCc-ccCchhhhCCCCCCEEeCc
Q 040379 347 RLN-GFTNNSIGQMSKLRTLSLN 368 (373)
Q Consensus 347 ~l~-~~~~~~~~~l~~L~~L~l~ 368 (373)
.+. +.+|..+..++.|+.++++
T Consensus 248 ~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 248 GFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCcCcchHHHHHhCCCCcEEecc
Confidence 998 5667777778777777664
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=2.3e-27 Score=210.79 Aligned_cols=228 Identities=24% Similarity=0.192 Sum_probs=188.9
Q ss_pred CEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCCEEEcc
Q 040379 112 TYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLG 191 (373)
Q Consensus 112 ~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~ 191 (373)
++++.+++.++. +|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+.. ..+..+..+++|++|+++
T Consensus 14 ~~~~c~~~~l~~--ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGLQA--VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR-IDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCCSS--CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECC
T ss_pred eEEEcCcCCccc--CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccce-eCHhhcCCccCCCEEeCC
Confidence 689999998884 56544 5799999999999997666789999999999999999843 334578899999999999
Q ss_pred Ccc-CCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccC
Q 040379 192 SNN-LSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDS 270 (373)
Q Consensus 192 ~n~-~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~ 270 (373)
+|. +... .+..+..+++|++|++++|.+++..+..+..+ ++|++|++++|.++ .++...+..+++|+.|++++
T Consensus 89 ~n~~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~ 162 (285)
T 1ozn_A 89 DNAQLRSV--DPATFHGLGRLHTLHLDRCGLQELGPGLFRGL---AALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHG 162 (285)
T ss_dssp SCTTCCCC--CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC---TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CCCCcccc--CHHHhcCCcCCCEEECCCCcCCEECHhHhhCC---cCCCEEECCCCccc-ccCHhHhccCCCccEEECCC
Confidence 997 6664 24678899999999999999998888888887 89999999999998 45555555566799999999
Q ss_pred ccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCcc
Q 040379 271 NLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNG 350 (373)
Q Consensus 271 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~ 350 (373)
|.+++..+..+..+++|+.|++++|.+++..|..+..+++|++|++++|++++..+..+..++ +|+.|++++|++..
T Consensus 163 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 163 NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR---ALQYLRLNDNPWVC 239 (285)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT---TCCEEECCSSCEEC
T ss_pred CcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCc---ccCEEeccCCCccC
Confidence 999866666788899999999999999988888899999999999999999876555565544 89999999998876
Q ss_pred cCc
Q 040379 351 FTN 353 (373)
Q Consensus 351 ~~~ 353 (373)
..+
T Consensus 240 ~~~ 242 (285)
T 1ozn_A 240 DCR 242 (285)
T ss_dssp SGG
T ss_pred CCC
Confidence 543
No 61
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=1.1e-26 Score=226.15 Aligned_cols=261 Identities=25% Similarity=0.227 Sum_probs=172.5
Q ss_pred CCCCCCcccceEe------cCCCCcEEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCC
Q 040379 63 EKRDCCKWTGVGC------SNRTGHVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKL 136 (373)
Q Consensus 63 ~~~~~c~w~~v~c------~~~~~~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L 136 (373)
...++|.|.+..| .-....++.++++++ +++ .+|..+. ++|++|++++|.++. +|. .+++|
T Consensus 17 ~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n-----~L~-~lp~~l~--~~L~~L~L~~N~l~~--lp~---~l~~L 83 (622)
T 3g06_A 17 RAAPAEESRGRAAVVQKMRACLNNGNAVLNVGES-----GLT-TLPDCLP--AHITTLVIPDNNLTS--LPA---LPPEL 83 (622)
T ss_dssp HTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSS-----CCS-CCCSCCC--TTCSEEEECSCCCSC--CCC---CCTTC
T ss_pred hcCCcchhccccccCcccccccCCCCcEEEecCC-----CcC-ccChhhC--CCCcEEEecCCCCCC--CCC---cCCCC
Confidence 3567788855321 101124677777776 444 4555443 677888888887773 454 46777
Q ss_pred CEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEc
Q 040379 137 SYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYL 216 (373)
Q Consensus 137 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l 216 (373)
++|++++|+++ .+|. .+++|++|++++|.+.... . .+++|++|++++|++...+. .+++|++|++
T Consensus 84 ~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~l~--~---~l~~L~~L~L~~N~l~~lp~------~l~~L~~L~L 148 (622)
T 3g06_A 84 RTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTHLP--A---LPSGLCKLWIFGNQLTSLPV------LPPGLQELSV 148 (622)
T ss_dssp CEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCCCC--C---CCTTCCEEECCSSCCSCCCC------CCTTCCEEEC
T ss_pred CEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCCCC--C---CCCCcCEEECCCCCCCcCCC------CCCCCCEEEC
Confidence 88888887776 4555 5677777777777773321 1 45566666666666655322 1356666666
Q ss_pred cCCCCCCCCcccccCCC--------------CCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCcccccccccccc
Q 040379 217 YRCHLPPIVPLSLSNLN--------------YSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFK 282 (373)
Q Consensus 217 ~~n~l~~~~~~~~~~l~--------------~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 282 (373)
++|.+++. |..+..+. .+++|+.|++++|.+++ +|. ..++|+.|++++|.++ .+|.
T Consensus 149 s~N~l~~l-~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~----~~~~L~~L~L~~N~l~-~l~~--- 218 (622)
T 3g06_A 149 SDNQLASL-PALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPT----LPSELYKLWAYNNRLT-SLPA--- 218 (622)
T ss_dssp CSSCCSCC-CCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCS-SCCC---
T ss_pred cCCcCCCc-CCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCC----ccchhhEEECcCCccc-ccCC---
Confidence 66665542 22221111 11667777777777763 443 2345777777777776 3443
Q ss_pred CCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCcccCchhhhCCCCC
Q 040379 283 HMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQMSKL 362 (373)
Q Consensus 283 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 362 (373)
.+++|+.|++++|.+++ +| ..+++|++|++++|+++ .+|. .+++|+.|++++|.++ .+|..+.++++|
T Consensus 219 ~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~------~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L 286 (622)
T 3g06_A 219 LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM------LPSGLLSLSVYRNQLT-RLPESLIHLSSE 286 (622)
T ss_dssp CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC------CCTTCCEEECCSSCCC-SCCGGGGGSCTT
T ss_pred CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc------ccccCcEEeCCCCCCC-cCCHHHhhcccc
Confidence 24789999999999985 55 45689999999999998 4554 2348999999999999 457789999999
Q ss_pred CEEeCcCCCCC
Q 040379 363 RTLSLNGNSLI 373 (373)
Q Consensus 363 ~~L~l~~n~lt 373 (373)
+.|++++|+++
T Consensus 287 ~~L~L~~N~l~ 297 (622)
T 3g06_A 287 TTVNLEGNPLS 297 (622)
T ss_dssp CEEECCSCCCC
T ss_pred CEEEecCCCCC
Confidence 99999999985
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=1.1e-27 Score=216.01 Aligned_cols=238 Identities=21% Similarity=0.172 Sum_probs=193.3
Q ss_pred CCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCCEEEc
Q 040379 111 LTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDL 190 (373)
Q Consensus 111 L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l 190 (373)
++..+++.+.+... ....+..+++|++|++++|++++..|..+..+++|++|++++|.+.. .. .+..+++|++|++
T Consensus 12 l~i~~ls~~~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~-~~~~l~~L~~L~L 87 (317)
T 3o53_A 12 YKIEKVTDSSLKQA-LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TL-DLESLSTLRTLDL 87 (317)
T ss_dssp EEEESCCTTTHHHH-HHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE--EE-EETTCTTCCEEEC
T ss_pred eeEeeccccchhhh-HHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc--ch-hhhhcCCCCEEEC
Confidence 45566777666532 44455667899999999999998777899999999999999999943 22 3889999999999
Q ss_pred cCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccC
Q 040379 191 GSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDS 270 (373)
Q Consensus 191 ~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~ 270 (373)
++|.+.+.+ ..++|++|++++|.+++..+. .+ ++|++|++++|.+++ +++..+..+++|+.|++++
T Consensus 88 s~n~l~~l~-------~~~~L~~L~l~~n~l~~~~~~---~~---~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~Ls~ 153 (317)
T 3o53_A 88 NNNYVQELL-------VGPSIETLHAANNNISRVSCS---RG---QGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKL 153 (317)
T ss_dssp CSSEEEEEE-------ECTTCCEEECCSSCCSEEEEC---CC---SSCEEEECCSSCCCS-GGGBCTGGGSSEEEEECTT
T ss_pred cCCcccccc-------CCCCcCEEECCCCccCCcCcc---cc---CCCCEEECCCCCCCC-ccchhhhccCCCCEEECCC
Confidence 999987642 348999999999999875543 24 789999999999995 4444445566799999999
Q ss_pred ccccccccccc-cCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCc
Q 040379 271 NLLRGSIPVAF-KHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLN 349 (373)
Q Consensus 271 n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~ 349 (373)
|.+++..+..+ ..+++|++|++++|.+++. +. ...+++|++|++++|++++. |..+..++ +|++|++++|.++
T Consensus 154 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~---~L~~L~L~~N~l~ 227 (317)
T 3o53_A 154 NEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAA---GVTWISLRNNKLV 227 (317)
T ss_dssp SCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGT---TCSEEECTTSCCC
T ss_pred CCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcc-hhhhcccC---cccEEECcCCccc
Confidence 99998777766 4789999999999999865 33 34589999999999999954 44466555 9999999999999
Q ss_pred ccCchhhhCCCCCCEEeCcCCCCC
Q 040379 350 GFTNNSIGQMSKLRTLSLNGNSLI 373 (373)
Q Consensus 350 ~~~~~~~~~l~~L~~L~l~~n~lt 373 (373)
+. |..+..+++|+.|++++|+++
T Consensus 228 ~l-~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 228 LI-EKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp EE-CTTCCCCTTCCEEECTTCCCB
T ss_pred ch-hhHhhcCCCCCEEEccCCCcc
Confidence 75 557889999999999999874
No 63
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=1.1e-25 Score=198.25 Aligned_cols=218 Identities=25% Similarity=0.289 Sum_probs=121.4
Q ss_pred CCCCcccceEecCCCCcEEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCC
Q 040379 65 RDCCKWTGVGCSNRTGHVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFA 144 (373)
Q Consensus 65 ~~~c~w~~v~c~~~~~~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n 144 (373)
.++|.|.|+.|.- ....+.++++++ .++ .+|..+. +++++|++++|.+++. .+..+..+++|++|++++|
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~~-----~l~-~ip~~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n 71 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSSK-----KLT-AIPSNIP--ADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDN 71 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTTS-----CCS-SCCSCCC--TTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECCSS
T ss_pred CccCCCCCCCCEe-CCCCCEEEccCC-----CCC-ccCCCCC--CCCCEEECcCCCCCee-CHHHhcCCCCCCEEECCCC
Confidence 4789999998852 123345555554 333 2333332 4566666666666543 3345566666666666666
Q ss_pred ccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCC
Q 040379 145 EFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPI 224 (373)
Q Consensus 145 ~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 224 (373)
.+++..+..+.++++|++|++++|.+.. .....+..+++|++|+++ +|.+++.
T Consensus 72 ~l~~i~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~--------------------------~n~l~~~ 124 (270)
T 2o6q_A 72 KLQTLPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLD--------------------------RNQLKSL 124 (270)
T ss_dssp CCSCCCTTTTSSCTTCCEEECCSSCCCC-CCTTTTTTCSSCCEEECC--------------------------SSCCCCC
T ss_pred ccCeeChhhhcCCCCCCEEECCCCcCCc-CCHhHcccccCCCEEECC--------------------------CCccCee
Confidence 6653333334555666666666665521 112233444444455444 4444444
Q ss_pred CcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEEEccCCcCccccccc
Q 040379 225 VPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDF 304 (373)
Q Consensus 225 ~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 304 (373)
.+..+..+ ++|++|++++|.++ .++...+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..
T Consensus 125 ~~~~~~~l---~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 200 (270)
T 2o6q_A 125 PPRVFDSL---TKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA 200 (270)
T ss_dssp CTTTTTTC---TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred CHHHhCcC---cCCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHH
Confidence 44444444 55555555555555 334333344444666666666666544555666777777777777777555555
Q ss_pred ccCCCCCCeEeCcCCcCcc
Q 040379 305 FGNMCSLTMLNISDNKLRG 323 (373)
Q Consensus 305 l~~l~~L~~L~L~~n~l~~ 323 (373)
+..+++|++|++++|.+..
T Consensus 201 ~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 201 FDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTTCTTCCEEECCSSCBCC
T ss_pred hccccCCCEEEecCCCeeC
Confidence 6677777777777777654
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=9.1e-27 Score=221.93 Aligned_cols=218 Identities=23% Similarity=0.179 Sum_probs=183.5
Q ss_pred CCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCC
Q 040379 132 SLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLL 211 (373)
Q Consensus 132 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L 211 (373)
.+++|++|++++|.+++..|..+..+++|++|++++|.+.. .++ +..+++|++|++++|.+.+.+ ..++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~-l~~l~~L~~L~Ls~N~l~~l~-------~~~~L 101 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TLD-LESLSTLRTLDLNNNYVQELL-------VGPSI 101 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEE--EEE-CTTCTTCCEEECCSSEEEEEE-------ECTTC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCC--Ccc-cccCCCCCEEEecCCcCCCCC-------CCCCc
Confidence 34589999999999998878899999999999999999943 223 889999999999999987643 23899
Q ss_pred cEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCcccccccccccc-CCCCCCEE
Q 040379 212 TTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFK-HMVSVSFL 290 (373)
Q Consensus 212 ~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L 290 (373)
++|++++|.+++..+. .+ ++|+.|++++|.+++..|..+. .+++|+.|++++|.+++..|..+. .+++|+.|
T Consensus 102 ~~L~L~~N~l~~~~~~---~l---~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 102 ETLHAANNNISRVSCS---RG---QGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174 (487)
T ss_dssp CEEECCSSCCCCEEEC---CC---SSCEEEECCSSCCCSGGGBCGG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred CEEECcCCcCCCCCcc---cc---CCCCEEECCCCCCCCCCchhhc-CCCCCCEEECCCCCCCCcChHHHhhhCCcccEE
Confidence 9999999999986553 34 7899999999999965555544 456699999999999998888776 79999999
Q ss_pred EccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCcccCchhhhCCCCCCEEeCcCC
Q 040379 291 GLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGN 370 (373)
Q Consensus 291 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 370 (373)
+|++|.+++..+ ...+++|++|+|++|.+++..| .+..++ +|+.|++++|.+++. |..+..+++|+.|++++|
T Consensus 175 ~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~---~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 175 NLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAA---GVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp ECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGT---TCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTC
T ss_pred ecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCC---CccEEEecCCcCccc-chhhccCCCCCEEEcCCC
Confidence 999999996533 3468999999999999997544 465555 999999999999985 556889999999999999
Q ss_pred CCC
Q 040379 371 SLI 373 (373)
Q Consensus 371 ~lt 373 (373)
+++
T Consensus 248 ~l~ 250 (487)
T 3oja_A 248 GFH 250 (487)
T ss_dssp CBC
T ss_pred CCc
Confidence 874
No 65
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=2.4e-25 Score=210.22 Aligned_cols=231 Identities=27% Similarity=0.351 Sum_probs=119.3
Q ss_pred cccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCC
Q 040379 104 ALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLS 183 (373)
Q Consensus 104 ~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 183 (373)
.++.+++|++|++++|.+++ +|.. ..+|++|++++|++++ +| .++++++|++|++++|++.... . ..+
T Consensus 148 ~~~~l~~L~~L~l~~N~l~~--lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~--~---~~~ 215 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNNSLKK--LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLP--D---LPL 215 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSC--CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCC--C---CCT
T ss_pred ccCCCCCCCEEECCCCcCcc--cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCC--C---CcC
Confidence 35556666666666665553 3332 2355666666665553 44 3556666666666666653211 1 113
Q ss_pred CCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccC
Q 040379 184 SLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNL 263 (373)
Q Consensus 184 ~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L 263 (373)
+|++|++++|.+... + .++.+++|++|++++|.+++ +|.. . ++|++|++++|.+++ +|.. .++|
T Consensus 216 ~L~~L~l~~n~l~~l---p-~~~~l~~L~~L~l~~N~l~~-l~~~---~---~~L~~L~l~~N~l~~-l~~~----~~~L 279 (454)
T 1jl5_A 216 SLESIVAGNNILEEL---P-ELQNLPFLTTIYADNNLLKT-LPDL---P---PSLEALNVRDNYLTD-LPEL----PQSL 279 (454)
T ss_dssp TCCEEECCSSCCSSC---C-CCTTCTTCCEEECCSSCCSS-CCSC---C---TTCCEEECCSSCCSC-CCCC----CTTC
T ss_pred cccEEECcCCcCCcc---c-ccCCCCCCCEEECCCCcCCc-cccc---c---cccCEEECCCCcccc-cCcc----cCcC
Confidence 555556655555532 2 25566666666666666654 2211 1 445555555555542 3321 1335
Q ss_pred cEEEccCccccc--cccccc-------------cCC-CCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCch
Q 040379 264 VLLGLDSNLLRG--SIPVAF-------------KHM-VSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPE 327 (373)
Q Consensus 264 ~~L~l~~n~l~~--~~~~~l-------------~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~ 327 (373)
+.|++++|.+++ .+|..+ ..+ ++|++|++++|++++ +|.. +++|++|++++|+++ .+|.
T Consensus 280 ~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~ 354 (454)
T 1jl5_A 280 TFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE 354 (454)
T ss_dssp CEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC
T ss_pred CEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc
Confidence 555555555543 122111 112 467777777777764 4432 467888888888777 4554
Q ss_pred hhhccCCCCccCEEECcCCcCcc--cCchhhhCC-------------CCCCEEeCcCCCCC
Q 040379 328 LIQNLSRFSSLKELYLENNRLNG--FTNNSIGQM-------------SKLRTLSLNGNSLI 373 (373)
Q Consensus 328 ~~~~l~~~~~L~~L~L~~n~l~~--~~~~~~~~l-------------~~L~~L~l~~n~lt 373 (373)
.+++|++|++++|++++ .+|..+..+ ++|++|++++|+++
T Consensus 355 ------~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 355 ------LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409 (454)
T ss_dssp ------CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------
T ss_pred ------hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence 13478888888888888 566666666 78888888888763
No 66
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=3.2e-28 Score=230.97 Aligned_cols=282 Identities=23% Similarity=0.220 Sum_probs=198.3
Q ss_pred cEEEEEcCCCCCCCCCcc----eecCccccCCCCCCEEeCCCCCCCCCCCccc-----cCCCCCCCEEeCcCCccccC--
Q 040379 81 HVIKLEIQPIDFDSFPLR----GTISPALLQLHRLTYLDLSLNNFSGSPIPEF-----IGSLTKLSYLDLSFAEFEGP-- 149 (373)
Q Consensus 81 ~v~~l~l~~~~l~~~~l~----~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-----l~~l~~L~~L~L~~n~l~~~-- 149 (373)
+++.++++++ .+. +.++..+..+++|++|++++|.+++. .+.. ....++|++|++++|.+++.
T Consensus 86 ~L~~L~L~~n-----~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~-~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 159 (461)
T 1z7x_W 86 KIQKLSLQNC-----CLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA-GLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159 (461)
T ss_dssp CCCEEECTTS-----CCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH-HHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred ceeEEEccCC-----CCCHHHHHHHHHHHccCCceeEEECCCCcCchH-HHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence 5778888776 444 24567778888888888888887642 2221 22356788888888888753
Q ss_pred --cccccCCCCCCCEEEccCCCCCCCCCCcccC-----CCCCCCEEEccCccCCCCc--chhhhhCCCCCCcEEEccCCC
Q 040379 150 --IPSHLGNLSALQHLDLSLNHLFSAGNLDWLS-----HLSSLTYLDLGSNNLSRST--DWLQVVGNLPLLTTLYLYRCH 220 (373)
Q Consensus 150 --~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~-----~l~~L~~L~l~~n~~~~~~--~~~~~~~~l~~L~~L~l~~n~ 220 (373)
++..+..+++|++|++++|.+...+ ...+. ..++|++|++++|.+.... .++..+..+++|++|++++|.
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~i~~~~-~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNNDINEAG-VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHH-HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHhhCCCCCEEECcCCCcchHH-HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 3555667788888888888873221 11121 3568888888888877631 245667788889999999888
Q ss_pred CCCCCcc-----cccCCCCCCccCEEECCCCcCCCC----chhHHHhccccCcEEEccCccccccccccccC-----CCC
Q 040379 221 LPPIVPL-----SLSNLNYSTSLQFLELSENNLTNS----IYPWLFNASSNLVLLGLDSNLLRGSIPVAFKH-----MVS 286 (373)
Q Consensus 221 l~~~~~~-----~~~~l~~~~~L~~L~ls~n~l~~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~-----l~~ 286 (373)
+++.... .+..+ ++|++|++++|.+++. ++..+. ..++|+.|++++|.+++..+..+.. .++
T Consensus 239 l~~~~~~~l~~~~~~~~---~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~ 314 (461)
T 1z7x_W 239 LGDVGMAELCPGLLHPS---SRLRTLWIWECGITAKGCGDLCRVLR-AKESLKELSLAGNELGDEGARLLCETLLEPGCQ 314 (461)
T ss_dssp CHHHHHHHHHHHHTSTT---CCCCEEECTTSCCCHHHHHHHHHHHH-HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCC
T ss_pred CChHHHHHHHHHHhcCC---CCceEEECcCCCCCHHHHHHHHHHHh-hCCCcceEECCCCCCchHHHHHHHHHhccCCcc
Confidence 7653221 12234 7899999999988754 333332 3455999999999887654444332 368
Q ss_pred CCEEEccCCcCccc----ccccccCCCCCCeEeCcCCcCcccCchhhhc-cCC-CCccCEEECcCCcCcc----cCchhh
Q 040379 287 VSFLGLASNEFEGG----VPDFFGNMCSLTMLNISDNKLRGHFPELIQN-LSR-FSSLKELYLENNRLNG----FTNNSI 356 (373)
Q Consensus 287 L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~-~~~L~~L~L~~n~l~~----~~~~~~ 356 (373)
|++|++++|.+++. ++..+..+++|++|++++|++++..+..+.. +.. +++|++|++++|.+++ .++..+
T Consensus 315 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l 394 (461)
T 1z7x_W 315 LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATL 394 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH
T ss_pred ceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHH
Confidence 99999999998865 4566677899999999999998765554432 221 4589999999999986 567778
Q ss_pred hCCCCCCEEeCcCCCCC
Q 040379 357 GQMSKLRTLSLNGNSLI 373 (373)
Q Consensus 357 ~~l~~L~~L~l~~n~lt 373 (373)
..+++|++|++++|+++
T Consensus 395 ~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 395 LANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHCCCCCEEECCSSSCC
T ss_pred HhCCCccEEECCCCCCC
Confidence 88999999999999875
No 67
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=2.3e-26 Score=217.13 Aligned_cols=199 Identities=23% Similarity=0.292 Sum_probs=104.0
Q ss_pred CCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcE
Q 040379 134 TKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTT 213 (373)
Q Consensus 134 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~ 213 (373)
++|++|++++|.+++ +|.. .++|++|++++|++..... ..++|++|++++|.+.+. + .++.+++|++
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~-----~~~~L~~L~L~~n~l~~l---p-~~~~l~~L~~ 157 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSD-----LPPLLEYLGVSNNQLEKL---P-ELQNSSFLKI 157 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCS-----CCTTCCEEECCSSCCSSC---C-CCTTCTTCCE
T ss_pred CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccC-----CCCCCCEEECcCCCCCCC---c-ccCCCCCCCE
Confidence 344555555554443 3322 2445555555555422111 014555666665555542 2 2555566666
Q ss_pred EEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEEEcc
Q 040379 214 LYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLA 293 (373)
Q Consensus 214 L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 293 (373)
|++++|.+++ +|.. . ++|++|++++|.+++ +| . +..+++|+.|++++|.+++ +|.. .++|++|+++
T Consensus 158 L~l~~N~l~~-lp~~---~---~~L~~L~L~~n~l~~-l~-~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~ 223 (454)
T 1jl5_A 158 IDVDNNSLKK-LPDL---P---PSLEFIAAGNNQLEE-LP-E-LQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAG 223 (454)
T ss_dssp EECCSSCCSC-CCCC---C---TTCCEEECCSSCCSS-CC-C-CTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECC
T ss_pred EECCCCcCcc-cCCC---c---ccccEEECcCCcCCc-Cc-c-ccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECc
Confidence 6666665554 2221 1 355666666666553 33 2 2333446666666666553 3322 1356666666
Q ss_pred CCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCcccCchhhhCCCCCCEEeCcCCCC
Q 040379 294 SNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 372 (373)
Q Consensus 294 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 372 (373)
+|.++ .+|. +..+++|++|++++|++++ +|.. .++|+.|++++|.+++. |.. .++|++|++++|++
T Consensus 224 ~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~------~~~L~~L~l~~N~l~~l-~~~---~~~L~~L~ls~N~l 289 (454)
T 1jl5_A 224 NNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL------PPSLEALNVRDNYLTDL-PEL---PQSLTFLDVSENIF 289 (454)
T ss_dssp SSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC------CTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCC
T ss_pred CCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc------ccccCEEECCCCccccc-Ccc---cCcCCEEECcCCcc
Confidence 66666 4553 6667777777777777764 3331 13667777777776653 221 35666666666655
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=2.3e-25 Score=196.94 Aligned_cols=226 Identities=22% Similarity=0.231 Sum_probs=176.7
Q ss_pred EEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCCEEEccC
Q 040379 113 YLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGS 192 (373)
Q Consensus 113 ~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~ 192 (373)
..+..+..+. .+|..+. ++|++|++++|++++..+..+.++++|++|++++|.+.. .....+..+++|++|++++
T Consensus 11 ~~~c~~~~l~--~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~ 85 (276)
T 2z62_A 11 TYQCMELNFY--KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTG 85 (276)
T ss_dssp EEECTTSCCS--SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCE-ECTTTTTTCTTCCEEECTT
T ss_pred eEEecCCCcc--ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCc-cCHHHccCCcCCCEEECCC
Confidence 5666666666 4666553 589999999999997666689999999999999999832 2334688899999999999
Q ss_pred ccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCC-chhHHHhccccCcEEEccCc
Q 040379 193 NNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNS-IYPWLFNASSNLVLLGLDSN 271 (373)
Q Consensus 193 n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~-~~~~~~~~~~~L~~L~l~~n 271 (373)
|.+.+.. +..+..+++|++|++++|.+.+..+..+..+ ++|++|++++|.+.+. +|..+. .+++|+.|++++|
T Consensus 86 n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~l~~~~~-~l~~L~~L~Ls~N 159 (276)
T 2z62_A 86 NPIQSLA--LGAFSGLSSLQKLVAVETNLASLENFPIGHL---KTLKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSN 159 (276)
T ss_dssp CCCCEEC--TTTTTTCTTCCEEECTTSCCCCSTTCCCTTC---TTCCEEECCSSCCCCCCCCGGGG-GCTTCCEEECCSS
T ss_pred CccCccC--hhhhcCCccccEEECCCCCccccCchhcccC---CCCCEEECcCCccceecCchhhc-cCCCCCEEECCCC
Confidence 9988742 3678899999999999999988777677777 8999999999998852 455544 4456999999999
Q ss_pred cccccccccccCCCCCC----EEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCc
Q 040379 272 LLRGSIPVAFKHMVSVS----FLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNR 347 (373)
Q Consensus 272 ~l~~~~~~~l~~l~~L~----~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~ 347 (373)
++++..+..+..+++|+ .|++++|.+++..+..+. ..+|++|++++|++++..+..+.. +++|+.|++++|+
T Consensus 160 ~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~---l~~L~~L~l~~N~ 235 (276)
T 2z62_A 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDR---LTSLQKIWLHTNP 235 (276)
T ss_dssp CCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTT---CCSCCEEECCSSC
T ss_pred CCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcc---cccccEEEccCCc
Confidence 99877677777666666 899999999865555444 458999999999988654444444 4489999999999
Q ss_pred CcccCc
Q 040379 348 LNGFTN 353 (373)
Q Consensus 348 l~~~~~ 353 (373)
+++..+
T Consensus 236 ~~c~c~ 241 (276)
T 2z62_A 236 WDCSCP 241 (276)
T ss_dssp BCCCTT
T ss_pred ccccCC
Confidence 887654
No 69
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.93 E-value=1.3e-27 Score=226.78 Aligned_cols=283 Identities=21% Similarity=0.190 Sum_probs=188.9
Q ss_pred CcEEEEEcCCCCCCCCCcceecCcccc-CCC----CCCEEeCCCCCCCCC---CCccccCCCCCCCEEeCcCCccccCcc
Q 040379 80 GHVIKLEIQPIDFDSFPLRGTISPALL-QLH----RLTYLDLSLNNFSGS---PIPEFIGSLTKLSYLDLSFAEFEGPIP 151 (373)
Q Consensus 80 ~~v~~l~l~~~~l~~~~l~~~~~~~l~-~l~----~L~~L~l~~n~l~~~---~~~~~l~~l~~L~~L~L~~n~l~~~~p 151 (373)
.+++.++++++ .+.+..+..+. .++ +|++|++++|.++.. .++..+..+++|++|++++|.+++..+
T Consensus 56 ~~L~~L~Ls~n-----~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 130 (461)
T 1z7x_W 56 PALAELNLRSN-----ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGL 130 (461)
T ss_dssp TTCCEEECTTC-----CCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHH
T ss_pred CCcCEEeCCCC-----cCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHH
Confidence 45777777775 45443333332 244 688888888877642 246677778888888888887764433
Q ss_pred ccc-----CCCCCCCEEEccCCCCCCCCC---CcccCCCCCCCEEEccCccCCCCc--chhhhhC-CCCCCcEEEccCCC
Q 040379 152 SHL-----GNLSALQHLDLSLNHLFSAGN---LDWLSHLSSLTYLDLGSNNLSRST--DWLQVVG-NLPLLTTLYLYRCH 220 (373)
Q Consensus 152 ~~l-----~~l~~L~~L~L~~n~~~~~~~---~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~-~l~~L~~L~l~~n~ 220 (373)
..+ ...++|++|++++|.+...+. ...+..+++|++|++++|.+.... .+...+. ..++|++|++++|.
T Consensus 131 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 210 (461)
T 1z7x_W 131 QLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG 210 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC
Confidence 332 235578888888887733221 224556788888888888765421 1111111 35688888888888
Q ss_pred CCCC----CcccccCCCCCCccCEEECCCCcCCCCchh----HHHhccccCcEEEccCcccccc----ccccccCCCCCC
Q 040379 221 LPPI----VPLSLSNLNYSTSLQFLELSENNLTNSIYP----WLFNASSNLVLLGLDSNLLRGS----IPVAFKHMVSVS 288 (373)
Q Consensus 221 l~~~----~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~----~~~~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~ 288 (373)
+++. ++..+..+ ++|++|++++|.+++.... .+....++|+.|++++|.+++. ++..+..+++|+
T Consensus 211 l~~~~~~~l~~~l~~~---~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 287 (461)
T 1z7x_W 211 VTSDNCRDLCGIVASK---ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLK 287 (461)
T ss_dssp CBTTHHHHHHHHHHHC---TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCC
T ss_pred CcHHHHHHHHHHHHhC---CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcc
Confidence 7764 35555555 8888888888887653322 2222356688999998888753 566777788899
Q ss_pred EEEccCCcCccccccccc-----CCCCCCeEeCcCCcCccc----CchhhhccCCCCccCEEECcCCcCcccCchhhhC-
Q 040379 289 FLGLASNEFEGGVPDFFG-----NMCSLTMLNISDNKLRGH----FPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQ- 358 (373)
Q Consensus 289 ~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~----~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~- 358 (373)
+|++++|.+++..+..+. ..++|++|++++|.+++. ++..+..+ ++|++|++++|.+++..+..+..
T Consensus 288 ~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~---~~L~~L~Ls~n~i~~~~~~~l~~~ 364 (461)
T 1z7x_W 288 ELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN---RFLLELQISNNRLEDAGVRELCQG 364 (461)
T ss_dssp EEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHC---SSCCEEECCSSBCHHHHHHHHHHH
T ss_pred eEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhC---CCccEEEccCCccccccHHHHHHH
Confidence 999999988765444333 236899999999988865 33444433 48999999999988776555543
Q ss_pred ----CCCCCEEeCcCCCCC
Q 040379 359 ----MSKLRTLSLNGNSLI 373 (373)
Q Consensus 359 ----l~~L~~L~l~~n~lt 373 (373)
.++|++|++++|+++
T Consensus 365 l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 365 LGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp HTSTTCCCCEEECTTSCCC
T ss_pred HcCCCCceEEEECCCCCCC
Confidence 679999999999875
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1.2e-24 Score=192.22 Aligned_cols=216 Identities=27% Similarity=0.260 Sum_probs=178.1
Q ss_pred ecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCccc
Q 040379 100 TISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWL 179 (373)
Q Consensus 100 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~ 179 (373)
.+|..+. ++|++|++++|.+++. .+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+.. ..+..+
T Consensus 21 ~ip~~l~--~~l~~L~ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~ 96 (276)
T 2z62_A 21 KIPDNLP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAF 96 (276)
T ss_dssp SCCSSSC--TTCCEEECTTCCCCEE-CTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTT
T ss_pred ccCCCCC--CCccEEECCCCccccc-CHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc-cChhhh
Confidence 3454442 5799999999999874 55588999999999999999997666789999999999999999933 334568
Q ss_pred CCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCC-CcccccCCCCCCccCEEECCCCcCCCCchhHHHh
Q 040379 180 SHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPI-VPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFN 258 (373)
Q Consensus 180 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~ 258 (373)
.++++|++|++++|.+.+... ..++.+++|++|++++|.+.+. +|..+..+ ++|++|++++|.+++. +...+.
T Consensus 97 ~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l---~~L~~L~Ls~N~l~~~-~~~~~~ 170 (276)
T 2z62_A 97 SGLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFKLPEYFSNL---TNLEHLDLSSNKIQSI-YCTDLR 170 (276)
T ss_dssp TTCTTCCEEECTTSCCCCSTT--CCCTTCTTCCEEECCSSCCCCCCCCGGGGGC---TTCCEEECCSSCCCEE-CGGGGH
T ss_pred cCCccccEEECCCCCccccCc--hhcccCCCCCEEECcCCccceecCchhhccC---CCCCEEECCCCCCCcC-CHHHhh
Confidence 899999999999999987533 4588999999999999999874 58888888 9999999999999854 433333
Q ss_pred ccccCc----EEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCc
Q 040379 259 ASSNLV----LLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFP 326 (373)
Q Consensus 259 ~~~~L~----~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p 326 (373)
.+.+++ .|++++|.+++..+..+ ...+|++|++++|.+++..+..+..+++|++|++++|.+++..|
T Consensus 171 ~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 171 VLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp HHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred hhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 344466 89999999996555444 44589999999999997777778999999999999999997654
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=3e-24 Score=189.07 Aligned_cols=206 Identities=25% Similarity=0.302 Sum_probs=165.9
Q ss_pred CCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcE
Q 040379 134 TKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTT 213 (373)
Q Consensus 134 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~ 213 (373)
...+++++++++++ .+|..+. ++|++|++++|++.. .....+.++++|++|++++|.+...+. ..+..+++|++
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~i~~--~~~~~l~~L~~ 89 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQTLPA--GIFKELKNLET 89 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSC-CCTTSSSSCTTCCEEECCSSCCSCCCT--TTTSSCTTCCE
T ss_pred CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCe-eCHHHhcCCCCCCEEECCCCccCeeCh--hhhcCCCCCCE
Confidence 36789999999998 6777654 689999999999943 333468899999999999999887532 55688999999
Q ss_pred EEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEEEcc
Q 040379 214 LYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLA 293 (373)
Q Consensus 214 L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 293 (373)
|++++|.+.+..+..+..+ ++|++|++++|.++ .+++..+..+++|+.|++++|.+++..+..+..+++|++|+++
T Consensus 90 L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 165 (270)
T 2o6q_A 90 LWVTDNKLQALPIGVFDQL---VNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLY 165 (270)
T ss_dssp EECCSSCCCCCCTTTTTTC---SSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred EECCCCcCCcCCHhHcccc---cCCCEEECCCCccC-eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEec
Confidence 9999999988777777777 89999999999988 4555555666779999999999986666668889999999999
Q ss_pred CCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCcccC
Q 040379 294 SNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFT 352 (373)
Q Consensus 294 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~ 352 (373)
+|.+++..+..+..+++|++|++++|++++..+..+.. +++|+.|++++|++....
T Consensus 166 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~---l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 166 NNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS---LEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT---CTTCCEEECCSSCBCCSS
T ss_pred CCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhcc---ccCCCEEEecCCCeeCCC
Confidence 99998777777888899999999999998654444444 448999999999886553
No 72
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=4.3e-25 Score=194.69 Aligned_cols=209 Identities=25% Similarity=0.230 Sum_probs=136.5
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCC
Q 040379 105 LLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSS 184 (373)
Q Consensus 105 l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~ 184 (373)
...+++|++|++++|.++. + ..+..+++|++|++++|.+.+ + ..+..+++|++|++++|.+.. .....+..+++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~--~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~ 110 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS--V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQS-LPNGVFDKLTN 110 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC--C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCC-CCTTTTTTCTT
T ss_pred cccccceeeeeeCCCCccc--c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCc-cChhHhcCCcC
Confidence 4457778888888887763 2 246677888888888887774 3 357777888888888887732 22334667777
Q ss_pred CCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCc
Q 040379 185 LTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLV 264 (373)
Q Consensus 185 L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~ 264 (373)
|++|++++|.+.+.+ +..+..+++|++|++++|.+++..+..+..+ ++|++|++++|.++ .+++..+..+++|+
T Consensus 111 L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~-~~~~~~~~~l~~L~ 184 (272)
T 3rfs_A 111 LKELVLVENQLQSLP--DGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL---TNLTELDLSYNQLQ-SLPEGVFDKLTQLK 184 (272)
T ss_dssp CCEEECTTSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTC---TTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred CCEEECCCCcCCccC--HHHhccCCCCCEEECCCCccCccCHHHhccC---ccCCEEECCCCCcC-ccCHHHhcCCccCC
Confidence 777777777776642 2446677777777777777776555555555 67777777777766 34444444445566
Q ss_pred EEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhcc
Q 040379 265 LLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNL 332 (373)
Q Consensus 265 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 332 (373)
.|++++|.+++..+..+..+++|+.|++++|.+.+ .+++|+.++++.|+++|.+|..++.+
T Consensus 185 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 185 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred EEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCccccc
Confidence 77777666666555556666666667666666553 24456666666666666666655443
No 73
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.93 E-value=1.3e-26 Score=210.82 Aligned_cols=272 Identities=20% Similarity=0.221 Sum_probs=209.4
Q ss_pred CCCCCcccceEecCCCCcEEEEEcCCCCCCCCCcceecCccccCC--CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeC
Q 040379 64 KRDCCKWTGVGCSNRTGHVIKLEIQPIDFDSFPLRGTISPALLQL--HRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDL 141 (373)
Q Consensus 64 ~~~~c~w~~v~c~~~~~~v~~l~l~~~~l~~~~l~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L 141 (373)
...|..|.++.|+ ...++.++++++ .+. +..+..+ ++++.|++++|.+.+. .+. +..+++|++|++
T Consensus 33 ~~vc~~W~~~~~~--~~~~~~l~l~~~-----~~~---~~~~~~~~~~~l~~L~l~~n~l~~~-~~~-~~~~~~L~~L~L 100 (336)
T 2ast_B 33 SGVCKRWYRLASD--ESLWQTLDLTGK-----NLH---PDVTGRLLSQGVIAFRCPRSFMDQP-LAE-HFSPFRVQHMDL 100 (336)
T ss_dssp TSSCHHHHHHHTC--STTSSEEECTTC-----BCC---HHHHHHHHHTTCSEEECTTCEECSC-CCS-CCCCBCCCEEEC
T ss_pred HHHHHHHHHHhcC--chhheeeccccc-----cCC---HHHHHhhhhccceEEEcCCcccccc-chh-hccCCCCCEEEc
Confidence 4567789988875 335678888875 333 3455666 8999999999999874 444 567999999999
Q ss_pred cCCccccC-cccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCCEEEccCc-cCCCCcchhhhhCCCCCCcEEEccCC
Q 040379 142 SFAEFEGP-IPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSN-NLSRSTDWLQVVGNLPLLTTLYLYRC 219 (373)
Q Consensus 142 ~~n~l~~~-~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~l~~L~~L~l~~n 219 (373)
++|.+++. +|..+..+++|++|++++|.+. ...+..+..+++|++|++++| .+++. .++..+..+++|++|++++|
T Consensus 101 ~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~-~~~~~~l~~~~~L~~L~L~~~~~l~~~-~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 101 SNSVIEVSTLHGILSQCSKLQNLSLEGLRLS-DPIVNTLAKNSNLVRLNLSGCSGFSEF-ALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp TTCEECHHHHHHHHTTBCCCSEEECTTCBCC-HHHHHHHTTCTTCSEEECTTCBSCCHH-HHHHHHHHCTTCCEEECCCC
T ss_pred cCCCcCHHHHHHHHhhCCCCCEEeCcCcccC-HHHHHHHhcCCCCCEEECCCCCCCCHH-HHHHHHhcCCCCCEEcCCCC
Confidence 99998865 8888899999999999999883 233456788999999999999 55531 25667888999999999999
Q ss_pred -CCCCC-CcccccCCCCCC-ccCEEECCCC--cCCCCchhHHHhccccCcEEEccCcc-ccccccccccCCCCCCEEEcc
Q 040379 220 -HLPPI-VPLSLSNLNYST-SLQFLELSEN--NLTNSIYPWLFNASSNLVLLGLDSNL-LRGSIPVAFKHMVSVSFLGLA 293 (373)
Q Consensus 220 -~l~~~-~~~~~~~l~~~~-~L~~L~ls~n--~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~L~ 293 (373)
.+++. ++..+..+ + +|++|++++| .+++...+..+..+++|+.|++++|. +++..+..+..+++|++|+++
T Consensus 179 ~~l~~~~~~~~~~~l---~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~ 255 (336)
T 2ast_B 179 FDFTEKHVQVAVAHV---SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLS 255 (336)
T ss_dssp TTCCHHHHHHHHHHS---CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred CCcChHHHHHHHHhc---ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCC
Confidence 88754 45666777 8 9999999999 56633223344556679999999999 777778889999999999999
Q ss_pred CCc-CcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCcccCchhhhC
Q 040379 294 SNE-FEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQ 358 (373)
Q Consensus 294 ~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~ 358 (373)
+|. ++......+..+++|++|++++| +++.. +..+. .+++.|++++|.+++..|..++.
T Consensus 256 ~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~---~~~l~--~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 256 RCYDIIPETLLELGEIPTLKTLQVFGI-VPDGT---LQLLK--EALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp TCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTC---HHHHH--HHSTTSEESCCCSCCTTCSSCSS
T ss_pred CCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHH---HHHHH--hhCcceEEecccCccccCCcccc
Confidence 995 44333446788999999999999 65432 22232 14667779999999998876654
No 74
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.92 E-value=3.4e-26 Score=210.16 Aligned_cols=258 Identities=21% Similarity=0.191 Sum_probs=186.9
Q ss_pred CCCcceecCccccCCCCCCEEeCCCCCCCCCCCc----cccCCCC-CCCEEeCcCCccccCcccccCCC-----CCCCEE
Q 040379 94 SFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIP----EFIGSLT-KLSYLDLSFAEFEGPIPSHLGNL-----SALQHL 163 (373)
Q Consensus 94 ~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~----~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l-----~~L~~L 163 (373)
.++++|.+|..+...++|++|++++|.+++. .+ ..+..++ +|++|++++|.+++..+..+..+ ++|++|
T Consensus 7 ~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L 85 (362)
T 3goz_A 7 LHPGSNPVEEFTSIPHGVTSLDLSLNNLYSI-STVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSL 85 (362)
T ss_dssp CCTTCCHHHHHHTSCTTCCEEECTTSCGGGS-CHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred cccchHHHHHHHhCCCCceEEEccCCCCChH-HHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEE
Confidence 3478888887777777799999999998864 44 5677788 89999999999987767666654 899999
Q ss_pred EccCCCCCCCCCCc---ccCCC-CCCCEEEccCccCCCCcc--hhhhhCCC-CCCcEEEccCCCCCCCCccc----ccCC
Q 040379 164 DLSLNHLFSAGNLD---WLSHL-SSLTYLDLGSNNLSRSTD--WLQVVGNL-PLLTTLYLYRCHLPPIVPLS----LSNL 232 (373)
Q Consensus 164 ~L~~n~~~~~~~~~---~~~~l-~~L~~L~l~~n~~~~~~~--~~~~~~~l-~~L~~L~l~~n~l~~~~~~~----~~~l 232 (373)
++++|.+...+... .+..+ ++|++|++++|.+.+... +...+..+ ++|++|++++|.+++..+.. +...
T Consensus 86 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 165 (362)
T 3goz_A 86 NLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAI 165 (362)
T ss_dssp ECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTS
T ss_pred ECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcC
Confidence 99999984332211 24455 899999999999876521 23345553 68999999999888644433 3344
Q ss_pred CCCCccCEEECCCCcCCCCchhHHHhc---c-ccCcEEEccCcccccc----ccccccC-CCCCCEEEccCCcCccccc-
Q 040379 233 NYSTSLQFLELSENNLTNSIYPWLFNA---S-SNLVLLGLDSNLLRGS----IPVAFKH-MVSVSFLGLASNEFEGGVP- 302 (373)
Q Consensus 233 ~~~~~L~~L~ls~n~l~~~~~~~~~~~---~-~~L~~L~l~~n~l~~~----~~~~l~~-l~~L~~L~L~~n~l~~~~~- 302 (373)
.++|++|++++|.+++..+..+... . ++|+.|++++|.+++. ++..+.. .++|++|++++|.+++..+
T Consensus 166 --~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 243 (362)
T 3goz_A 166 --PANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLE 243 (362)
T ss_dssp --CTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHH
T ss_pred --CccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHH
Confidence 1389999999999887666544432 2 4699999999998863 4555555 4589999999999987544
Q ss_pred ---ccccCCCCCCeEeCcCCcCcccCchhh----hccCCCCccCEEECcCCcCcccCch
Q 040379 303 ---DFFGNMCSLTMLNISDNKLRGHFPELI----QNLSRFSSLKELYLENNRLNGFTNN 354 (373)
Q Consensus 303 ---~~l~~l~~L~~L~L~~n~l~~~~p~~~----~~l~~~~~L~~L~L~~n~l~~~~~~ 354 (373)
..+..+++|++|++++|.+.+..+..+ ..++.+++|+.|++++|++.+..+.
T Consensus 244 ~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 244 NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302 (362)
T ss_dssp HHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred HHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence 345677899999999998553322222 2455666899999999998776544
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=5.4e-24 Score=189.24 Aligned_cols=204 Identities=22% Similarity=0.174 Sum_probs=168.3
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCC
Q 040379 105 LLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSS 184 (373)
Q Consensus 105 l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~ 184 (373)
+.+++++++++++++.++. +|..+. ++++.|++++|.+++..|..+..+++|++|++++|.+... +....+++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~--ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~l~~ 78 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA--LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL---QVDGTLPV 78 (290)
T ss_dssp EECSTTCCEEECTTSCCSS--CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE---ECCSCCTT
T ss_pred ccccCCccEEECCCCCCCc--CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc---cCCCCCCc
Confidence 5678889999999998884 666553 6899999999999877778888999999999999988432 22378889
Q ss_pred CCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCc
Q 040379 185 LTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLV 264 (373)
Q Consensus 185 L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~ 264 (373)
|++|++++|.+.. ++..+..+++|++|++++|++++..+..+..+ ++|++|++++|.++ .+|...+..+++|+
T Consensus 79 L~~L~Ls~N~l~~---l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l---~~L~~L~L~~N~l~-~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 79 LGTLDLSHNQLQS---LPLLGQTLPALTVLDVSFNRLTSLPLGALRGL---GELQELYLKGNELK-TLPPGLLTPTPKLE 151 (290)
T ss_dssp CCEEECCSSCCSS---CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTC---TTCCEEECTTSCCC-CCCTTTTTTCTTCC
T ss_pred CCEEECCCCcCCc---CchhhccCCCCCEEECCCCcCcccCHHHHcCC---CCCCEEECCCCCCC-ccChhhcccccCCC
Confidence 9999999998876 44567888999999999999998777778888 89999999999988 56666666677799
Q ss_pred EEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcc
Q 040379 265 LLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRG 323 (373)
Q Consensus 265 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 323 (373)
.|++++|++++..+..+..+++|+.|++++|+++ .+|..+..+++|+.+++++|.+..
T Consensus 152 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred EEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 9999999998655666788999999999999998 677777788899999999998764
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=1.3e-24 Score=191.69 Aligned_cols=229 Identities=23% Similarity=0.276 Sum_probs=182.5
Q ss_pred CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCCEE
Q 040379 109 HRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYL 188 (373)
Q Consensus 109 ~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 188 (373)
.++..+++..+.+.+. .....+++|+.|++++|.+. .++ .+..+++|++|++++|.+.. .+.+..+++|++|
T Consensus 19 ~~l~~l~l~~~~~~~~---~~~~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~---~~~l~~l~~L~~L 90 (272)
T 3rfs_A 19 AETIKANLKKKSVTDA---VTQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHD---ISALKELTNLTYL 90 (272)
T ss_dssp HHHHHHHHTCSCTTSE---ECHHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCC---CGGGTTCTTCCEE
T ss_pred HHHHHHHhcCcccccc---cccccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCC---chhhcCCCCCCEE
Confidence 3444556666666532 23456789999999999887 333 47889999999999999843 3568889999999
Q ss_pred EccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEc
Q 040379 189 DLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGL 268 (373)
Q Consensus 189 ~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l 268 (373)
++++|.+.+.+ +..+..+++|++|++++|.+++..+..+..+ ++|++|++++|.++ .+++..+..+++|+.|++
T Consensus 91 ~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l 164 (272)
T 3rfs_A 91 ILTGNQLQSLP--NGVFDKLTNLKELVLVENQLQSLPDGVFDKL---TNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDL 164 (272)
T ss_dssp ECTTSCCCCCC--TTTTTTCTTCCEEECTTSCCCCCCTTTTTTC---TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred ECCCCccCccC--hhHhcCCcCCCEEECCCCcCCccCHHHhccC---CCCCEEECCCCccC-ccCHHHhccCccCCEEEC
Confidence 99999988753 3567889999999999999988777777777 89999999999988 455555556667999999
Q ss_pred cCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcC
Q 040379 269 DSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRL 348 (373)
Q Consensus 269 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l 348 (373)
++|++++..+..++.+++|+.|++++|.+++..+..+..+++|++|++++|.+.+. +++|+.+++..|.+
T Consensus 165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~----------~~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT----------CPGIRYLSEWINKH 234 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC----------TTTTHHHHHHHHHT
T ss_pred CCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc----------CcHHHHHHHHHHhC
Confidence 99999877777788899999999999999987777788999999999999988754 23688888999999
Q ss_pred cccCchhhhCCCC
Q 040379 349 NGFTNNSIGQMSK 361 (373)
Q Consensus 349 ~~~~~~~~~~l~~ 361 (373)
+|.+|..++.++.
T Consensus 235 ~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 235 SGVVRNSAGSVAP 247 (272)
T ss_dssp GGGBBCTTSCBCG
T ss_pred CCcccCcccccCC
Confidence 9988877776543
No 77
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.92 E-value=4.6e-26 Score=211.16 Aligned_cols=248 Identities=21% Similarity=0.256 Sum_probs=173.7
Q ss_pred ecCccccCCCCCCEEeCCCCCCCCCC---CccccCCCCCCCEEeCcCC---ccccCccccc-------CCCCCCCEEEcc
Q 040379 100 TISPALLQLHRLTYLDLSLNNFSGSP---IPEFIGSLTKLSYLDLSFA---EFEGPIPSHL-------GNLSALQHLDLS 166 (373)
Q Consensus 100 ~~~~~l~~l~~L~~L~l~~n~l~~~~---~~~~l~~l~~L~~L~L~~n---~l~~~~p~~l-------~~l~~L~~L~L~ 166 (373)
.++..+..+++|++|++++|.+++.. ++..+..+++|++|++++| ++++.+|..+ ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 45667778899999999999887531 3344778899999999886 4455556554 688999999999
Q ss_pred CCCCCCCC---CCcccCCCCCCCEEEccCccCCCC--cchhhhhCCC---------CCCcEEEccCCCCC-CCCc---cc
Q 040379 167 LNHLFSAG---NLDWLSHLSSLTYLDLGSNNLSRS--TDWLQVVGNL---------PLLTTLYLYRCHLP-PIVP---LS 228 (373)
Q Consensus 167 ~n~~~~~~---~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~~l---------~~L~~L~l~~n~l~-~~~~---~~ 228 (373)
+|.+...+ .+..+..+++|++|++++|.+... ..++..+..+ ++|++|++++|.++ +..+ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 99984332 223567888999999999887532 1133334444 78888888888886 3333 24
Q ss_pred ccCCCCCCccCEEECCCCcCCCC----chhHHHhccccCcEEEccCcccc----ccccccccCCCCCCEEEccCCcCccc
Q 040379 229 LSNLNYSTSLQFLELSENNLTNS----IYPWLFNASSNLVLLGLDSNLLR----GSIPVAFKHMVSVSFLGLASNEFEGG 300 (373)
Q Consensus 229 ~~~l~~~~~L~~L~ls~n~l~~~----~~~~~~~~~~~L~~L~l~~n~l~----~~~~~~l~~l~~L~~L~L~~n~l~~~ 300 (373)
+..+ ++|++|++++|.++.. +.+..+...++|+.|++++|.++ +.+|..+..+++|+.|+|++|.+++.
T Consensus 183 l~~~---~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~ 259 (386)
T 2ca6_A 183 FQSH---RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259 (386)
T ss_dssp HHHC---TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred HHhC---CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh
Confidence 4455 7888888888887732 12212334456888888888885 45677778888888888888888764
Q ss_pred ----cccccc--CCCCCCeEeCcCCcCcc----cCchhh-hccCCCCccCEEECcCCcCcccCc
Q 040379 301 ----VPDFFG--NMCSLTMLNISDNKLRG----HFPELI-QNLSRFSSLKELYLENNRLNGFTN 353 (373)
Q Consensus 301 ----~~~~l~--~l~~L~~L~L~~n~l~~----~~p~~~-~~l~~~~~L~~L~L~~n~l~~~~~ 353 (373)
++..+. .+++|++|+|++|.+++ .+|..+ ..++ +|++|++++|++++..+
T Consensus 260 ~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~---~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 260 GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP---DLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCT---TCCEEECTTSBSCTTSH
T ss_pred hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCC---CceEEEccCCcCCcchh
Confidence 455553 37888888888888886 366555 3344 78888888888877663
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.92 E-value=1.7e-25 Score=203.44 Aligned_cols=249 Identities=21% Similarity=0.208 Sum_probs=193.9
Q ss_pred CCCEEeCCCCCCCCCCCccccCCC--CCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCCE
Q 040379 110 RLTYLDLSLNNFSGSPIPEFIGSL--TKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTY 187 (373)
Q Consensus 110 ~L~~L~l~~n~l~~~~~~~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 187 (373)
.++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+.....+..+..+++|++
T Consensus 48 ~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 4789999998876 3445556 8999999999999976555 6689999999999999833324456889999999
Q ss_pred EEccCccCCCCcchhhhhCCCCCCcEEEccCC-CCCCC-CcccccCCCCCCccCEEECCCC-cCCCCchhHHHhccc-cC
Q 040379 188 LDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRC-HLPPI-VPLSLSNLNYSTSLQFLELSEN-NLTNSIYPWLFNASS-NL 263 (373)
Q Consensus 188 L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~~~~L~~L~ls~n-~l~~~~~~~~~~~~~-~L 263 (373)
|++++|.+.+ ..+..+..+++|++|++++| .+++. .+..+..+ ++|++|++++| .+++.........++ +|
T Consensus 123 L~L~~~~l~~--~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~---~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 123 LSLEGLRLSD--PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC---SRLDELNLSWCFDFTEKHVQVAVAHVSETI 197 (336)
T ss_dssp EECTTCBCCH--HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC---TTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred EeCcCcccCH--HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcC---CCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence 9999998775 36678889999999999999 67653 55556777 99999999999 888653334444555 79
Q ss_pred cEEEccCc--ccc-ccccccccCCCCCCEEEccCCc-CcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccC
Q 040379 264 VLLGLDSN--LLR-GSIPVAFKHMVSVSFLGLASNE-FEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLK 339 (373)
Q Consensus 264 ~~L~l~~n--~l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~ 339 (373)
++|++++| .++ +.+|..+..+++|+.|++++|. +++..+..+..+++|++|++++|. +..+..+..+..+++|+
T Consensus 198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~l~~~~~L~ 275 (336)
T 2ast_B 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--DIIPETLLELGEIPTLK 275 (336)
T ss_dssp CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT--TCCGGGGGGGGGCTTCC
T ss_pred CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--CCCHHHHHHHhcCCCCC
Confidence 99999999 455 4677788899999999999999 777788889999999999999995 23334444455567999
Q ss_pred EEECcCCcCcccCchhhhCCCCCCEEeCcCCCCC
Q 040379 340 ELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLI 373 (373)
Q Consensus 340 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~lt 373 (373)
.|++++| ++......+. .+++.|++++|+++
T Consensus 276 ~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~ 306 (336)
T 2ast_B 276 TLQVFGI-VPDGTLQLLK--EALPHLQINCSHFT 306 (336)
T ss_dssp EEECTTS-SCTTCHHHHH--HHSTTSEESCCCSC
T ss_pred EEeccCc-cCHHHHHHHH--hhCcceEEecccCc
Confidence 9999999 5443333332 23566678888875
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=1.3e-23 Score=186.79 Aligned_cols=204 Identities=25% Similarity=0.255 Sum_probs=169.3
Q ss_pred cCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCC
Q 040379 130 IGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLP 209 (373)
Q Consensus 130 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~ 209 (373)
+++++++++++++++.++ .+|..+. +++++|++++|.+. ...+..+..+++|++|++++|.+.+.+. .+.++
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~l~ 77 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQV----DGTLP 77 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEEC----CSCCT
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCcccC----CCCCC
Confidence 567889999999999998 6776664 78999999999993 2334578899999999999999887532 27899
Q ss_pred CCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCE
Q 040379 210 LLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSF 289 (373)
Q Consensus 210 ~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 289 (373)
+|++|++++|.+.. +|..+..+ ++|++|++++|+++ .+++..+..+++|+.|++++|++++..+..+..+++|+.
T Consensus 78 ~L~~L~Ls~N~l~~-l~~~~~~l---~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 152 (290)
T 1p9a_G 78 VLGTLDLSHNQLQS-LPLLGQTL---PALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152 (290)
T ss_dssp TCCEEECCSSCCSS-CCCCTTTC---TTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cCCEEECCCCcCCc-CchhhccC---CCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCE
Confidence 99999999999984 66667777 89999999999998 556555666677999999999999777777888999999
Q ss_pred EEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCcc
Q 040379 290 LGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNG 350 (373)
Q Consensus 290 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~ 350 (373)
|++++|++++..+..+..+++|++|++++|+++ .+|..+.... +|+.+++++|++..
T Consensus 153 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~---~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSH---LLPFAFLHGNPWLC 209 (290)
T ss_dssp EECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC---CCSEEECCSCCBCC
T ss_pred EECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccc---cCCeEEeCCCCccC
Confidence 999999999766677788999999999999998 6776665544 89999999998764
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=1.1e-25 Score=208.64 Aligned_cols=247 Identities=17% Similarity=0.155 Sum_probs=169.5
Q ss_pred CccccCCCCCCCEEeCcCCccccCcc----cccCCCCCCCEEEccCCCCCCCC--CCcc-------cCCCCCCCEEEccC
Q 040379 126 IPEFIGSLTKLSYLDLSFAEFEGPIP----SHLGNLSALQHLDLSLNHLFSAG--NLDW-------LSHLSSLTYLDLGS 192 (373)
Q Consensus 126 ~~~~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~L~~n~~~~~~--~~~~-------~~~l~~L~~L~l~~ 192 (373)
++..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.... .+.. +..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 55566677888888888888875533 34667888888888887652211 1112 36788888888888
Q ss_pred ccCCCC--cchhhhhCCCCCCcEEEccCCCCCCCCcccccC-CCCC---------CccCEEECCCCcCCCC-chh--HHH
Q 040379 193 NNLSRS--TDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSN-LNYS---------TSLQFLELSENNLTNS-IYP--WLF 257 (373)
Q Consensus 193 n~~~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~~---------~~L~~L~ls~n~l~~~-~~~--~~~ 257 (373)
|.+... ..++..+..+++|++|++++|.++...+..+.. +..+ ++|++|++++|.+++. ++. ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 887653 124567778888888888888876433333322 1111 5788888888888733 332 223
Q ss_pred hccccCcEEEccCccccc-----cccccccCCCCCCEEEccCCcCc----ccccccccCCCCCCeEeCcCCcCccc----
Q 040379 258 NASSNLVLLGLDSNLLRG-----SIPVAFKHMVSVSFLGLASNEFE----GGVPDFFGNMCSLTMLNISDNKLRGH---- 324 (373)
Q Consensus 258 ~~~~~L~~L~l~~n~l~~-----~~~~~l~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~L~~n~l~~~---- 324 (373)
...++|+.|++++|.++. ..+..+..+++|+.|+|++|.++ +.+|..+..+++|++|+|++|++++.
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 344568888888888873 23446778888888888888886 45677778888888888888888765
Q ss_pred CchhhhccCCCCccCEEECcCCcCcc----cCchhh-hCCCCCCEEeCcCCCCC
Q 040379 325 FPELIQNLSRFSSLKELYLENNRLNG----FTNNSI-GQMSKLRTLSLNGNSLI 373 (373)
Q Consensus 325 ~p~~~~~l~~~~~L~~L~L~~n~l~~----~~~~~~-~~l~~L~~L~l~~n~lt 373 (373)
+|..+.. ..+++|++|+|++|.+++ .+|..+ .++++|+.|++++|+++
T Consensus 264 l~~~l~~-~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 264 VVDAFSK-LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHHHHHT-CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HHHHHhh-ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 3333321 224588888888888887 355555 56788888888888874
No 81
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=6.2e-23 Score=199.75 Aligned_cols=232 Identities=24% Similarity=0.201 Sum_probs=160.2
Q ss_pred CcEEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCC
Q 040379 80 GHVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSA 159 (373)
Q Consensus 80 ~~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 159 (373)
.+++.|+++++ .++ .+|. .+++|++|++++|.++. +|. .+++|++|++++|++++ +|. .+++
T Consensus 61 ~~L~~L~L~~N-----~l~-~lp~---~l~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~ 122 (622)
T 3g06_A 61 AHITTLVIPDN-----NLT-SLPA---LPPELRTLEVSGNQLTS--LPV---LPPGLLELSIFSNPLTH-LPA---LPSG 122 (622)
T ss_dssp TTCSEEEECSC-----CCS-CCCC---CCTTCCEEEECSCCCSC--CCC---CCTTCCEEEECSCCCCC-CCC---CCTT
T ss_pred CCCcEEEecCC-----CCC-CCCC---cCCCCCEEEcCCCcCCc--CCC---CCCCCCEEECcCCcCCC-CCC---CCCC
Confidence 35667777765 333 2333 45667777777777663 444 45666777776666663 443 3455
Q ss_pred CCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhhh--------------CCCCCCcEEEccCCCCCCCC
Q 040379 160 LQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVV--------------GNLPLLTTLYLYRCHLPPIV 225 (373)
Q Consensus 160 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--------------~~l~~L~~L~l~~n~l~~~~ 225 (373)
|++|++++|++... +. .+++|++|++++|.+.+.+..+..+ ..+++|+.|++++|.+++ +
T Consensus 123 L~~L~L~~N~l~~l--p~---~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l 196 (622)
T 3g06_A 123 LCKLWIFGNQLTSL--PV---LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-L 196 (622)
T ss_dssp CCEEECCSSCCSCC--CC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-C
T ss_pred cCEEECCCCCCCcC--CC---CCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-C
Confidence 66666666665321 11 1355555555555555433222222 234889999999998886 3
Q ss_pred cccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEEEccCCcCcccccccc
Q 040379 226 PLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFF 305 (373)
Q Consensus 226 ~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 305 (373)
|. .. ++|+.|++++|.++ .+|. ..++|+.|++++|.+++ +| ..+++|+.|++++|.++ .+|.
T Consensus 197 ~~---~~---~~L~~L~L~~N~l~-~l~~----~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~-- 258 (622)
T 3g06_A 197 PT---LP---SELYKLWAYNNRLT-SLPA----LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM-- 258 (622)
T ss_dssp CC---CC---TTCCEEECCSSCCS-SCCC----CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC--
T ss_pred CC---cc---chhhEEECcCCccc-ccCC----CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc--
Confidence 32 22 78999999999998 5554 24669999999999985 55 45689999999999999 4565
Q ss_pred cCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCcccCchhhhC
Q 040379 306 GNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQ 358 (373)
Q Consensus 306 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~ 358 (373)
.+++|++|++++|+++ .+|..+..++ +|+.|++++|++++..|..+..
T Consensus 259 -~~~~L~~L~Ls~N~L~-~lp~~l~~l~---~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 259 -LPSGLLSLSVYRNQLT-RLPESLIHLS---SETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp -CCTTCCEEECCSSCCC-SCCGGGGGSC---TTCEEECCSCCCCHHHHHHHHH
T ss_pred -ccccCcEEeCCCCCCC-cCCHHHhhcc---ccCEEEecCCCCCCcCHHHHHh
Confidence 6789999999999999 7788777665 9999999999999988776553
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=5.6e-25 Score=202.03 Aligned_cols=257 Identities=21% Similarity=0.241 Sum_probs=133.9
Q ss_pred EeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcc----cccCCCC-CCCEEEccCCCCCCCCCCcccCCC-----C
Q 040379 114 LDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIP----SHLGNLS-ALQHLDLSLNHLFSAGNLDWLSHL-----S 183 (373)
Q Consensus 114 L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l~-~L~~L~L~~n~~~~~~~~~~~~~l-----~ 183 (373)
+.++.|.+++. +|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+...+ +..+..+ +
T Consensus 3 ~~ls~n~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~-~~~l~~~l~~~~~ 80 (362)
T 3goz_A 3 YKLTLHPGSNP-VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKN-SDELVQILAAIPA 80 (362)
T ss_dssp EECCCCTTCCH-HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSC-HHHHHHHHHTSCT
T ss_pred cccccccchHH-HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHH-HHHHHHHHhccCC
Confidence 45566666653 55555555556666666666664444 4455565 6666666666663221 2222221 6
Q ss_pred CCCEEEccCccCCCCc--chhhhhCCC-CCCcEEEccCCCCCCCCcccccC-CCC-CCccCEEECCCCcCCCCchhHH--
Q 040379 184 SLTYLDLGSNNLSRST--DWLQVVGNL-PLLTTLYLYRCHLPPIVPLSLSN-LNY-STSLQFLELSENNLTNSIYPWL-- 256 (373)
Q Consensus 184 ~L~~L~l~~n~~~~~~--~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~-l~~-~~~L~~L~ls~n~l~~~~~~~~-- 256 (373)
+|++|++++|.+.+.. .+...+..+ ++|++|++++|.+++..+..+.. +.. +++|++|++++|.+++.....+
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 6666666666665431 112223344 56666666666665544433321 111 1466666666666654333322
Q ss_pred --HhccccCcEEEccCccccccccccc----cCC-CCCCEEEccCCcCccc----ccccccC-CCCCCeEeCcCCcCccc
Q 040379 257 --FNASSNLVLLGLDSNLLRGSIPVAF----KHM-VSVSFLGLASNEFEGG----VPDFFGN-MCSLTMLNISDNKLRGH 324 (373)
Q Consensus 257 --~~~~~~L~~L~l~~n~l~~~~~~~l----~~l-~~L~~L~L~~n~l~~~----~~~~l~~-l~~L~~L~L~~n~l~~~ 324 (373)
....++|++|++++|.+++..+..+ ..+ ++|++|+|++|.+++. ++..+.. .++|++|++++|++++.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 2222246666666666665444332 233 3666666666666642 2333333 34666666666666654
Q ss_pred Cchhhhc-cCCCCccCEEECcCCcCcccCc-------hhhhCCCCCCEEeCcCCCC
Q 040379 325 FPELIQN-LSRFSSLKELYLENNRLNGFTN-------NSIGQMSKLRTLSLNGNSL 372 (373)
Q Consensus 325 ~p~~~~~-l~~~~~L~~L~L~~n~l~~~~~-------~~~~~l~~L~~L~l~~n~l 372 (373)
.+..+.. +..+++|++|++++|.+.+..+ ..+..+++|+.||+++|++
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 4433322 2344466666666666433322 1334555666666666655
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=2.6e-24 Score=193.37 Aligned_cols=182 Identities=20% Similarity=0.190 Sum_probs=105.1
Q ss_pred CCCCCCCEEEccCccCCCCcc-hh-hhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCC--chhH
Q 040379 180 SHLSSLTYLDLGSNNLSRSTD-WL-QVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNS--IYPW 255 (373)
Q Consensus 180 ~~l~~L~~L~l~~n~~~~~~~-~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~--~~~~ 255 (373)
..+++|++|++++|.+.+... +. ..+..+++|++|++++|.+.+..+..++.+ ++|++|++++|.+.+. ++..
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~ 190 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF---PALTSLDLSDNPGLGERGLMAA 190 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC---TTCCEEECCSCTTCHHHHHHTT
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC---CCCCEEECCCCCCccchhhhHH
Confidence 444444555555444443211 11 223355666666666666665555555555 6666666666665432 1111
Q ss_pred -HHhccccCcEEEccCccccccccc----cccCCCCCCEEEccCCcCcccccccccCC---CCCCeEeCcCCcCcccCch
Q 040379 256 -LFNASSNLVLLGLDSNLLRGSIPV----AFKHMVSVSFLGLASNEFEGGVPDFFGNM---CSLTMLNISDNKLRGHFPE 327 (373)
Q Consensus 256 -~~~~~~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~L~~n~l~~~~p~ 327 (373)
.....++|++|++++|+++. ++. .++.+++|++|++++|.+++..|..+..+ ++|++|++++|+++ .+|.
T Consensus 191 ~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~ 268 (310)
T 4glp_A 191 LCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPK 268 (310)
T ss_dssp SCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCS
T ss_pred HhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhh
Confidence 11234456666666666652 222 23566777777777777776656555554 57777777777777 5555
Q ss_pred hhhccCCCCccCEEECcCCcCcccCchhhhCCCCCCEEeCcCCCCC
Q 040379 328 LIQNLSRFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLI 373 (373)
Q Consensus 328 ~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~lt 373 (373)
.+. ++|++|++++|++++... +..+++|+.|++++|+|+
T Consensus 269 ~~~-----~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 269 GLP-----AKLRVLDLSSNRLNRAPQ--PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCC-----SCCSCEECCSCCCCSCCC--TTSCCCCSCEECSSTTTS
T ss_pred hhc-----CCCCEEECCCCcCCCCch--hhhCCCccEEECcCCCCC
Confidence 432 377777777777776422 466777777777777764
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=7.2e-23 Score=183.65 Aligned_cols=193 Identities=25% Similarity=0.366 Sum_probs=115.8
Q ss_pred CCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCC
Q 040379 107 QLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLT 186 (373)
Q Consensus 107 ~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 186 (373)
.+++|++|++++|.++. ++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+.. .+.+..+++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~---~~~~~~l~~L~ 110 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN---VSAIAGLQSIK 110 (308)
T ss_dssp HHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC---CGGGTTCTTCC
T ss_pred HcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC---chhhcCCCCCC
Confidence 45666666666666653 33 35566666666666666663 333 6666666666666666632 23456666666
Q ss_pred EEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEE
Q 040379 187 YLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLL 266 (373)
Q Consensus 187 ~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L 266 (373)
+|++++|.+.+.+ .+..+++|++|++++|.+++..+ +..+ ++|++|++++|.+++ ++. +..+++|+.|
T Consensus 111 ~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l~~~~~--l~~l---~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L 178 (308)
T 1h6u_A 111 TLDLTSTQITDVT----PLAGLSNLQVLYLDLNQITNISP--LAGL---TNLQYLSIGNAQVSD-LTP--LANLSKLTTL 178 (308)
T ss_dssp EEECTTSCCCCCG----GGTTCTTCCEEECCSSCCCCCGG--GGGC---TTCCEEECCSSCCCC-CGG--GTTCTTCCEE
T ss_pred EEECCCCCCCCch----hhcCCCCCCEEECCCCccCcCcc--ccCC---CCccEEEccCCcCCC-Chh--hcCCCCCCEE
Confidence 6666666665531 25666666666666666665433 4444 666666666666663 333 3344456666
Q ss_pred EccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcc
Q 040379 267 GLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRG 323 (373)
Q Consensus 267 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 323 (373)
++++|.+++..+ +..+++|++|++++|++++..+ +..+++|++|++++|++++
T Consensus 179 ~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 179 KADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp ECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred ECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 666666664322 5666667777777776664332 5666667777777666653
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=7.4e-24 Score=190.41 Aligned_cols=231 Identities=19% Similarity=0.169 Sum_probs=179.0
Q ss_pred CCCCCCEEeCCCCCCCCCCCccc--cCCCCCCCEEeCcCCccccCccccc--CCCCCCCEEEccCCCCCCCCCC---ccc
Q 040379 107 QLHRLTYLDLSLNNFSGSPIPEF--IGSLTKLSYLDLSFAEFEGPIPSHL--GNLSALQHLDLSLNHLFSAGNL---DWL 179 (373)
Q Consensus 107 ~l~~L~~L~l~~n~l~~~~~~~~--l~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~L~~n~~~~~~~~---~~~ 179 (373)
....++.+.+.++.++...+... ...+++|++|++++|.+.+..|..+ ..+++|++|++++|.+...... ..+
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 34567888988887754212111 1134679999999999998888888 8999999999999999432221 234
Q ss_pred CCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCC--C--cccccCCCCCCccCEEECCCCcCCCCchh-
Q 040379 180 SHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPI--V--PLSLSNLNYSTSLQFLELSENNLTNSIYP- 254 (373)
Q Consensus 180 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~--~~~~~~l~~~~~L~~L~ls~n~l~~~~~~- 254 (373)
..+++|++|++++|.+.+. .+..++.+++|++|++++|.+.+. . +..+..+ ++|++|++++|.++ .++.
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l---~~L~~L~Ls~N~l~-~l~~~ 215 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAF--SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKF---PAIQNLALRNTGME-TPTGV 215 (310)
T ss_dssp TBCSCCCEEEEECCSSCCC--CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSS---CCCCSCBCCSSCCC-CHHHH
T ss_pred hhccCCCEEEeeCCCcchh--hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcC---CCCCEEECCCCCCC-chHHH
Confidence 5789999999999999775 347788999999999999987652 1 1223455 89999999999997 3333
Q ss_pred --HHHhccccCcEEEccCccccccccccccCC---CCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhh
Q 040379 255 --WLFNASSNLVLLGLDSNLLRGSIPVAFKHM---VSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELI 329 (373)
Q Consensus 255 --~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~ 329 (373)
.++...++|++|++++|++++..|..+..+ ++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +
T Consensus 216 ~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~ 290 (310)
T 4glp_A 216 CAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-P 290 (310)
T ss_dssp HHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-T
T ss_pred HHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-h
Confidence 345566779999999999998878777776 69999999999999 6677664 8999999999999964 33 3
Q ss_pred hccCCCCccCEEECcCCcCccc
Q 040379 330 QNLSRFSSLKELYLENNRLNGF 351 (373)
Q Consensus 330 ~~l~~~~~L~~L~L~~n~l~~~ 351 (373)
..+++|+.|++++|+++..
T Consensus 291 ---~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 291 ---DELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp ---TSCCCCSCEECSSTTTSCC
T ss_pred ---hhCCCccEEECcCCCCCCC
Confidence 3445999999999999753
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=2.2e-22 Score=180.52 Aligned_cols=210 Identities=21% Similarity=0.297 Sum_probs=170.3
Q ss_pred EeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCCEEEccCc
Q 040379 114 LDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSN 193 (373)
Q Consensus 114 L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n 193 (373)
+.+..+.+++. . ....+++|++|++++|.+. .+| .+..+++|++|++++|.+.. ..+ +..+++|++|++++|
T Consensus 24 ~~l~~~~~~~~-~--~~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~--~~~-~~~l~~L~~L~L~~n 95 (308)
T 1h6u_A 24 IAAGKSNVTDT-V--TQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITD--LAP-LKNLTKITELELSGN 95 (308)
T ss_dssp HHTTCSSTTSE-E--CHHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC--CGG-GTTCCSCCEEECCSC
T ss_pred HHhCCCCcCce-e--cHHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCC--Chh-HccCCCCCEEEccCC
Confidence 34555555532 1 2345789999999999998 455 58899999999999999943 233 899999999999999
Q ss_pred cCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCccc
Q 040379 194 NLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLL 273 (373)
Q Consensus 194 ~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l 273 (373)
.+.+. ..+..+++|++|++++|.+++.. .+..+ ++|++|++++|.+++ ++. +..+++|+.|++++|.+
T Consensus 96 ~l~~~----~~~~~l~~L~~L~l~~n~l~~~~--~l~~l---~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~l~~n~l 163 (308)
T 1h6u_A 96 PLKNV----SAIAGLQSIKTLDLTSTQITDVT--PLAGL---SNLQVLYLDLNQITN-ISP--LAGLTNLQYLSIGNAQV 163 (308)
T ss_dssp CCSCC----GGGTTCTTCCEEECTTSCCCCCG--GGTTC---TTCCEEECCSSCCCC-CGG--GGGCTTCCEEECCSSCC
T ss_pred cCCCc----hhhcCCCCCCEEECCCCCCCCch--hhcCC---CCCCEEECCCCccCc-Ccc--ccCCCCccEEEccCCcC
Confidence 98874 36889999999999999998743 36666 999999999999985 443 45566799999999999
Q ss_pred cccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCcccC
Q 040379 274 RGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFT 352 (373)
Q Consensus 274 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~ 352 (373)
++. +. +..+++|+.|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|++++..
T Consensus 164 ~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-----l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 164 SDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-----LANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp CCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-----GTTCTTCCEEEEEEEEEECCC
T ss_pred CCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc-----ccCCCCCCEEEccCCeeecCC
Confidence 854 33 8899999999999999986444 7889999999999999996532 455669999999999998744
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=4.8e-23 Score=178.01 Aligned_cols=196 Identities=19% Similarity=0.181 Sum_probs=126.1
Q ss_pred CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCc-cccCcccccCCCCCCCEEEccC-CCCCCCCCCcccCCCCCCC
Q 040379 109 HRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAE-FEGPIPSHLGNLSALQHLDLSL-NHLFSAGNLDWLSHLSSLT 186 (373)
Q Consensus 109 ~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~-n~~~~~~~~~~~~~l~~L~ 186 (373)
++|++|++++|.+++. .+..+..+++|++|++++|+ +++..+..+.++++|++|++++ |.+.. .....+..+++|+
T Consensus 31 ~~l~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~-i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTI-PSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY-IDPDALKELPLLK 108 (239)
T ss_dssp TTCCEEEEESCCCSEE-CTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE-ECTTSEECCTTCC
T ss_pred CcccEEEEeCCcceEE-CHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE-cCHHHhCCCCCCC
Confidence 3788999999988864 44578888999999999886 7754455778888899999888 88732 2334567788888
Q ss_pred EEEccCccCCCCcchhhhhCCCCCCc---EEEccCC-CCCCCCcccccCCCCCCccC-EEECCCCcCCCCchhHHHhccc
Q 040379 187 YLDLGSNNLSRSTDWLQVVGNLPLLT---TLYLYRC-HLPPIVPLSLSNLNYSTSLQ-FLELSENNLTNSIYPWLFNASS 261 (373)
Q Consensus 187 ~L~l~~n~~~~~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~l~~~~~L~-~L~ls~n~l~~~~~~~~~~~~~ 261 (373)
+|++++|.+.+.+ . +..+++|+ +|++++| .+++..+..+..+ ++|+ +|++++|.++ .+|...+.. .
T Consensus 109 ~L~l~~n~l~~lp---~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l---~~L~~~L~l~~n~l~-~i~~~~~~~-~ 179 (239)
T 2xwt_C 109 FLGIFNTGLKMFP---D-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGL---CNETLTLKLYNNGFT-SVQGYAFNG-T 179 (239)
T ss_dssp EEEEEEECCCSCC---C-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTT---BSSEEEEECCSCCCC-EECTTTTTT-C
T ss_pred EEeCCCCCCcccc---c-cccccccccccEEECCCCcchhhcCcccccch---hcceeEEEcCCCCCc-ccCHhhcCC-C
Confidence 8888888877643 2 55666666 7777777 6666555556555 6677 7777777666 555544444 3
Q ss_pred cCcEEEccCcc-ccccccccccCC-CCCCEEEccCCcCcccccccccCCCCCCeEeCcC
Q 040379 262 NLVLLGLDSNL-LRGSIPVAFKHM-VSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISD 318 (373)
Q Consensus 262 ~L~~L~l~~n~-l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 318 (373)
+|+.|++++|+ +++..+..+..+ ++|+.|++++|++++ +|.. .+++|+.|++++
T Consensus 180 ~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~ 235 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARN 235 (239)
T ss_dssp EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTT
T ss_pred CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccC
Confidence 35566665553 553334445555 555555555555552 2221 344555555544
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=2.4e-22 Score=174.91 Aligned_cols=181 Identities=23% Similarity=0.229 Sum_probs=146.6
Q ss_pred CCCCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCc
Q 040379 158 SALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTS 237 (373)
Q Consensus 158 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~ 237 (373)
...++++++++.+.. .+..+. +++++|++++|.+.+.. +..+..+++|++|++++|.+++..+..+..+ ++
T Consensus 14 ~~~~~l~~~~~~l~~--~p~~~~--~~l~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~ 84 (251)
T 3m19_A 14 EGKKEVDCQGKSLDS--VPSGIP--ADTEKLDLQSTGLATLS--DATFRGLTKLTWLNLDYNQLQTLSAGVFDDL---TE 84 (251)
T ss_dssp GGGTEEECTTCCCSS--CCSCCC--TTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECTTSCCCCCCTTTTTTC---TT
T ss_pred CCCeEEecCCCCccc--cCCCCC--CCCCEEEccCCCcCccC--HhHhcCcccCCEEECCCCcCCccCHhHhccC---Cc
Confidence 457889999998843 233332 68999999999988753 3678889999999999999998888778887 89
Q ss_pred cCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCc
Q 040379 238 LQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNIS 317 (373)
Q Consensus 238 L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 317 (373)
|++|++++|.++ .++...+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 85 L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 163 (251)
T 3m19_A 85 LGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163 (251)
T ss_dssp CCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECC
Confidence 999999999998 5666666666779999999999987666667889999999999999987777778889999999999
Q ss_pred CCcCcccCchhhhccCCCCccCEEECcCCcCccc
Q 040379 318 DNKLRGHFPELIQNLSRFSSLKELYLENNRLNGF 351 (373)
Q Consensus 318 ~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~ 351 (373)
+|++++..+..+..++ +|+.|++++|++++.
T Consensus 164 ~N~l~~~~~~~~~~l~---~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 164 TNQLQSVPHGAFDRLG---KLQTITLFGNQFDCS 194 (251)
T ss_dssp SSCCSCCCTTTTTTCT---TCCEEECCSCCBCTT
T ss_pred CCcCCccCHHHHhCCC---CCCEEEeeCCceeCC
Confidence 9999866655555444 899999999998876
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=6e-22 Score=172.40 Aligned_cols=180 Identities=23% Similarity=0.281 Sum_probs=115.2
Q ss_pred CCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCCEEE
Q 040379 110 RLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLD 189 (373)
Q Consensus 110 ~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 189 (373)
..++++++++.++ .+|..+. +++++|++++|.+++..+..+.++++|++|++++|.+.. .....+..+++|++|+
T Consensus 15 ~~~~l~~~~~~l~--~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 15 GKKEVDCQGKSLD--SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGTEEECTTCCCS--SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEE
T ss_pred CCeEEecCCCCcc--ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc-cCHhHhccCCcCCEEE
Confidence 3578899999888 3666654 688999999999987777778888889999998888833 2333466677777777
Q ss_pred ccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEcc
Q 040379 190 LGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLD 269 (373)
Q Consensus 190 l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~ 269 (373)
+++|.+...+ +..+..+++|++|++++|.+++..+..+..+ ++ |+.|+++
T Consensus 90 L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l---~~-------------------------L~~L~Ls 139 (251)
T 3m19_A 90 LANNQLASLP--LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL---TK-------------------------LKELRLN 139 (251)
T ss_dssp CTTSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTC---TT-------------------------CCEEECC
T ss_pred CCCCcccccC--hhHhcccCCCCEEEcCCCcCCCcChhHhccC---Cc-------------------------ccEEECc
Confidence 7777766532 2344555555555555555554444334444 44 4455555
Q ss_pred CccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCccc
Q 040379 270 SNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGH 324 (373)
Q Consensus 270 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 324 (373)
+|++++..+..++.+++|++|++++|++++..+..+..+++|++|++++|.+.+.
T Consensus 140 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 140 TNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 5555433344455666666666666666655555566666666666666666544
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=6.9e-23 Score=177.05 Aligned_cols=204 Identities=20% Similarity=0.257 Sum_probs=116.2
Q ss_pred CccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCC-CCCCCCCcccCCCCCCCEEEccC-ccCCCCcchhh
Q 040379 126 IPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNH-LFSAGNLDWLSHLSSLTYLDLGS-NNLSRSTDWLQ 203 (373)
Q Consensus 126 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~ 203 (373)
+|. +. ++|++|++++|++++..+..+.++++|++|++++|. +. ......+..+++|++|++++ |.+...+ +.
T Consensus 26 ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~--~~ 99 (239)
T 2xwt_C 26 IPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYID--PD 99 (239)
T ss_dssp CCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEEC--TT
T ss_pred cCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcC--HH
Confidence 555 33 478888888888886555577888888888888886 62 22233566777777777776 7666532 24
Q ss_pred hhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccC---EEECCCCcCCCCchhHHHhccccCcEEEccCcccccccccc
Q 040379 204 VVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQ---FLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVA 280 (373)
Q Consensus 204 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~---~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 280 (373)
.+..+++|++|++++|.+++ +|. +..+ ++|+ +|++++|. .+++..+..
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~-lp~-~~~l---~~L~~L~~L~l~~N~------------------------~l~~i~~~~ 150 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKM-FPD-LTKV---YSTDIFFILEITDNP------------------------YMTSIPVNA 150 (239)
T ss_dssp SEECCTTCCEEEEEEECCCS-CCC-CTTC---CBCCSEEEEEEESCT------------------------TCCEECTTT
T ss_pred HhCCCCCCCEEeCCCCCCcc-ccc-cccc---cccccccEEECCCCc------------------------chhhcCccc
Confidence 55666667777776666665 332 4444 4444 55555550 444333334
Q ss_pred ccCCCCCC-EEEccCCcCcccccccccCCCCCCeEeCcCCc-CcccCchhhhccCCCCccCEEECcCCcCcccCchhhhC
Q 040379 281 FKHMVSVS-FLGLASNEFEGGVPDFFGNMCSLTMLNISDNK-LRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQ 358 (373)
Q Consensus 281 l~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~ 358 (373)
+..+++|+ .|++++|+++...+..+.. ++|++|++++|+ +++..+..+..+ .++|+.|++++|++++.++. .
T Consensus 151 ~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l--~~~L~~L~l~~N~l~~l~~~---~ 224 (239)
T 2xwt_C 151 FQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGV--YSGPSLLDVSQTSVTALPSK---G 224 (239)
T ss_dssp TTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTC--SBCCSEEECTTCCCCCCCCT---T
T ss_pred ccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhcc--ccCCcEEECCCCccccCChh---H
Confidence 55555555 5555555555222222333 556666666663 553333333333 02566666666666544332 4
Q ss_pred CCCCCEEeCcCC
Q 040379 359 MSKLRTLSLNGN 370 (373)
Q Consensus 359 l~~L~~L~l~~n 370 (373)
+++|+.|+++++
T Consensus 225 ~~~L~~L~l~~~ 236 (239)
T 2xwt_C 225 LEHLKELIARNT 236 (239)
T ss_dssp CTTCSEEECTTC
T ss_pred hccCceeeccCc
Confidence 556666666554
No 91
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=2.2e-21 Score=163.89 Aligned_cols=186 Identities=25% Similarity=0.267 Sum_probs=134.1
Q ss_pred CCCcccceEecCCCCcEEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCc
Q 040379 66 DCCKWTGVGCSNRTGHVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAE 145 (373)
Q Consensus 66 ~~c~w~~v~c~~~~~~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~ 145 (373)
..|.|.++.|.... +. .+|..+ .++|++|++++|.+++. .+..+..+++|++|++++|+
T Consensus 5 C~C~~~~v~c~~~~-----------------l~-~~p~~~--~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~ 63 (208)
T 2o6s_A 5 CSCSGTTVECYSQG-----------------RT-SVPTGI--PAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNK 63 (208)
T ss_dssp CEEETTEEECCSSC-----------------CS-SCCSCC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSC
T ss_pred CEECCCEEEecCCC-----------------cc-CCCCCC--CCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCc
Confidence 44789999996421 11 233322 45889999999999864 55667889999999999999
Q ss_pred cccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCC
Q 040379 146 FEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIV 225 (373)
Q Consensus 146 l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 225 (373)
+++..+..+..+++|++|++++|.+.. .....+..+++|++|++++|.+.+.+ +..+..+++|++|++++|.+++..
T Consensus 64 l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~N~l~~~~ 140 (208)
T 2o6s_A 64 LQSLPNGVFNKLTSLTYLNLSTNQLQS-LPNGVFDKLTQLKELALNTNQLQSLP--DGVFDKLTQLKDLRLYQNQLKSVP 140 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCSCCC
T ss_pred cCccChhhcCCCCCcCEEECCCCcCCc-cCHhHhcCccCCCEEEcCCCcCcccC--HhHhccCCcCCEEECCCCccceeC
Confidence 986555567889999999999999842 23335678888888888888887643 245677888888888888887766
Q ss_pred cccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCC
Q 040379 226 PLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVS 286 (373)
Q Consensus 226 ~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~ 286 (373)
+..+..+ ++|++|++++|.+.+..+ +++.|+++.|+++|.+|..++.++.
T Consensus 141 ~~~~~~l---~~L~~L~l~~N~~~~~~~--------~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 141 DGVFDRL---TSLQYIWLHDNPWDCTCP--------GIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTTTTTC---TTCCEEECCSCCBCCCTT--------TTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred HHHhccC---CCccEEEecCCCeecCCC--------CHHHHHHHHHhCCceeeccCccccC
Confidence 6556666 778888888877664332 3666677777777777766655443
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.87 E-value=1.4e-21 Score=178.58 Aligned_cols=230 Identities=18% Similarity=0.141 Sum_probs=156.0
Q ss_pred ecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCccc-ccCCCCCCCE-EEccCCCCCCCCCCc
Q 040379 100 TISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPS-HLGNLSALQH-LDLSLNHLFSAGNLD 177 (373)
Q Consensus 100 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~-L~L~~n~~~~~~~~~ 177 (373)
.+|..+ .+++++|++++|+++.. .+..|.++++|++|+|++|++.+.+|. .|.+++++++ +.+..|++. ...+.
T Consensus 23 ~iP~~l--~~~l~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~-~l~~~ 98 (350)
T 4ay9_X 23 EIPSDL--PRNAIELRFVLTKLRVI-QKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPE 98 (350)
T ss_dssp SCCTTC--CTTCSEEEEESCCCSEE-CTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC-EECTT
T ss_pred ccCcCc--CCCCCEEEccCCcCCCc-CHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc-ccCch
Confidence 456555 36789999999998853 334688899999999999988766664 5678888765 556667773 23345
Q ss_pred ccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccC-CCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHH
Q 040379 178 WLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYR-CHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWL 256 (373)
Q Consensus 178 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~ 256 (373)
.+..+++|++|++++|++...+. ..+....++..+++.+ +.+....+..+..+. ..++.|++++|.++ .++...
T Consensus 99 ~f~~l~~L~~L~l~~n~l~~~~~--~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~--~~l~~L~L~~N~i~-~i~~~~ 173 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNTGIKHLPD--VHKIHSLQKVLLDIQDNINIHTIERNSFVGLS--FESVILWLNKNGIQ-EIHNSA 173 (350)
T ss_dssp SBCCCTTCCEEEEEEECCSSCCC--CTTCCBSSCEEEEEESCTTCCEECTTSSTTSB--SSCEEEECCSSCCC-EECTTS
T ss_pred hhhhccccccccccccccccCCc--hhhcccchhhhhhhccccccccccccchhhcc--hhhhhhcccccccc-CCChhh
Confidence 67888899999999988877533 3445566777888865 445544444555441 35788888888887 677766
Q ss_pred HhccccCcEEEccC-ccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCC
Q 040379 257 FNASSNLVLLGLDS-NLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRF 335 (373)
Q Consensus 257 ~~~~~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~ 335 (373)
+...+ ++.+++.+ |.++...+..|..+++|++|++++|+++...+.. +.+|+.|.+.++.--..+|. +..+
T Consensus 174 f~~~~-L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~----l~~l 245 (350)
T 4ay9_X 174 FNGTQ-LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPT----LEKL 245 (350)
T ss_dssp STTEE-EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCC----TTTC
T ss_pred ccccc-hhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCC----chhC
Confidence 66555 88888875 5555333346788888888888888888543333 44556665555443335553 3445
Q ss_pred CccCEEECcCC
Q 040379 336 SSLKELYLENN 346 (373)
Q Consensus 336 ~~L~~L~L~~n 346 (373)
++|+.+++.++
T Consensus 246 ~~L~~l~l~~~ 256 (350)
T 4ay9_X 246 VALMEASLTYP 256 (350)
T ss_dssp CSCCEEECSCH
T ss_pred cChhhCcCCCC
Confidence 58888888764
No 93
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.87 E-value=1.9e-23 Score=204.27 Aligned_cols=216 Identities=12% Similarity=0.102 Sum_probs=136.7
Q ss_pred cccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccC-----------
Q 040379 150 IPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYR----------- 218 (373)
Q Consensus 150 ~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~----------- 218 (373)
+|..+..+++|++|++++|.+........+..+++|++|+++ +.+... .+......+++|++|++++
T Consensus 285 l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~-~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~ 362 (592)
T 3ogk_B 285 MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDR-GLEVLAQYCKQLKRLRIERGADEQGMEDEE 362 (592)
T ss_dssp GGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHH-HHHHHHHHCTTCCEEEEECCCCSSTTSSTT
T ss_pred HHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHH-HHHHHHHhCCCCCEEEeecCcccccccccc
Confidence 344445556666666666664222211234566666666666 222211 2333445567777777773
Q ss_pred CCCCCCCccc-ccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEcc----Ccccccc-----ccccccCCCCCC
Q 040379 219 CHLPPIVPLS-LSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLD----SNLLRGS-----IPVAFKHMVSVS 288 (373)
Q Consensus 219 n~l~~~~~~~-~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~----~n~l~~~-----~~~~l~~l~~L~ 288 (373)
+.+++..... ...+ ++|++|+++.|.+++..+..+...+++|+.|+++ .|.+++. ++..+..+++|+
T Consensus 363 ~~~~~~~~~~l~~~~---~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~ 439 (592)
T 3ogk_B 363 GLVSQRGLIALAQGC---QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLR 439 (592)
T ss_dssp CCCCHHHHHHHHHHC---TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCC
T ss_pred CccCHHHHHHHHhhC---ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCC
Confidence 3333221111 2234 7888888888888876666776666678888886 5566642 344466788888
Q ss_pred EEEccCCc--Cccccccccc-CCCCCCeEeCcCCcCccc-CchhhhccCCCCccCEEECcCCcCcccC-chhhhCCCCCC
Q 040379 289 FLGLASNE--FEGGVPDFFG-NMCSLTMLNISDNKLRGH-FPELIQNLSRFSSLKELYLENNRLNGFT-NNSIGQMSKLR 363 (373)
Q Consensus 289 ~L~L~~n~--l~~~~~~~l~-~l~~L~~L~L~~n~l~~~-~p~~~~~l~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~ 363 (373)
.|+++.|. +++..+..+. .+++|++|++++|++++. ++..+ ..+++|++|++++|.+++.. +.....+++|+
T Consensus 440 ~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 516 (592)
T 3ogk_B 440 RFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFS---RGCPNLQKLEMRGCCFSERAIAAAVTKLPSLR 516 (592)
T ss_dssp EEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHH---TCCTTCCEEEEESCCCBHHHHHHHHHHCSSCC
T ss_pred EEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHH---hcCcccCeeeccCCCCcHHHHHHHHHhcCccC
Confidence 88887543 6655444443 478899999999998863 23333 44568999999999987653 44446789999
Q ss_pred EEeCcCCCCC
Q 040379 364 TLSLNGNSLI 373 (373)
Q Consensus 364 ~L~l~~n~lt 373 (373)
+|++++|+++
T Consensus 517 ~L~ls~n~it 526 (592)
T 3ogk_B 517 YLWVQGYRAS 526 (592)
T ss_dssp EEEEESCBCC
T ss_pred eeECcCCcCC
Confidence 9999999875
No 94
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.86 E-value=2.8e-23 Score=203.03 Aligned_cols=136 Identities=10% Similarity=0.017 Sum_probs=94.2
Q ss_pred CccCEEECCC-----------CcCCCCchhHHHhccccCcEEEccCccccccccccccC-CCCCCEEEcc----CCcCcc
Q 040379 236 TSLQFLELSE-----------NNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKH-MVSVSFLGLA----SNEFEG 299 (373)
Q Consensus 236 ~~L~~L~ls~-----------n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~L~----~n~l~~ 299 (373)
++|++|++++ +.+++.....+...+++|+.|+++.+.+++..+..++. +++|+.|+++ .|.+++
T Consensus 342 ~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~ 421 (592)
T 3ogk_B 342 KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITD 421 (592)
T ss_dssp TTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSS
T ss_pred CCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccC
Confidence 6677777772 45554434444555666888888777777666656654 7888888886 556665
Q ss_pred c-----ccccccCCCCCCeEeCcCCc--CcccCchhhhccCCCCccCEEECcCCcCcccC-chhhhCCCCCCEEeCcCCC
Q 040379 300 G-----VPDFFGNMCSLTMLNISDNK--LRGHFPELIQNLSRFSSLKELYLENNRLNGFT-NNSIGQMSKLRTLSLNGNS 371 (373)
Q Consensus 300 ~-----~~~~l~~l~~L~~L~L~~n~--l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~ 371 (373)
. ++..+..+++|++|++++|. +++..+..+.. .+++|++|++++|.+++.. +..+.++++|++|++++|+
T Consensus 422 ~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 422 LPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ--YSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH--SCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred chHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH--hCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence 3 33445668888888887543 66554444432 3458999999999998743 5456789999999999998
Q ss_pred CC
Q 040379 372 LI 373 (373)
Q Consensus 372 lt 373 (373)
++
T Consensus 500 l~ 501 (592)
T 3ogk_B 500 FS 501 (592)
T ss_dssp CB
T ss_pred Cc
Confidence 64
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=1.2e-20 Score=181.53 Aligned_cols=189 Identities=24% Similarity=0.310 Sum_probs=154.8
Q ss_pred CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCCEE
Q 040379 109 HRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYL 188 (373)
Q Consensus 109 ~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 188 (373)
.+|++|++++|.+++ +|..+ +++|++|++++|+++ .+| ..+++|++|++++|++.. .+. +.. +|++|
T Consensus 59 ~~L~~L~Ls~n~L~~--lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~--ip~-l~~--~L~~L 125 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS--LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST--LPE-LPA--SLKHL 125 (571)
T ss_dssp TTCSEEECCSSCCSC--CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC--CCC-CCT--TCCEE
T ss_pred CCccEEEeCCCCCCc--cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC--cch-hhc--CCCEE
Confidence 379999999999985 66655 379999999999999 677 567999999999999944 333 444 99999
Q ss_pred EccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEc
Q 040379 189 DLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGL 268 (373)
Q Consensus 189 ~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l 268 (373)
++++|.+++++ . .+++|+.|++++|.+++ +|. .+ ++|++|++++|.+++ +|. +. ++|+.|++
T Consensus 126 ~Ls~N~l~~lp---~---~l~~L~~L~Ls~N~l~~-lp~---~l---~~L~~L~Ls~N~L~~-lp~-l~---~~L~~L~L 187 (571)
T 3cvr_A 126 DVDNNQLTMLP---E---LPALLEYINADNNQLTM-LPE---LP---TSLEVLSVRNNQLTF-LPE-LP---ESLEALDV 187 (571)
T ss_dssp ECCSSCCSCCC---C---CCTTCCEEECCSSCCSC-CCC---CC---TTCCEEECCSSCCSC-CCC-CC---TTCCEEEC
T ss_pred ECCCCcCCCCC---C---cCccccEEeCCCCccCc-CCC---cC---CCcCEEECCCCCCCC-cch-hh---CCCCEEEC
Confidence 99999998843 3 68999999999999987 444 34 899999999999985 776 32 66999999
Q ss_pred cCccccccccccccCCCCC-------CEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccC
Q 040379 269 DSNLLRGSIPVAFKHMVSV-------SFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLS 333 (373)
Q Consensus 269 ~~n~l~~~~~~~l~~l~~L-------~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 333 (373)
++|.++ .+|. +.. +| +.|+|++|.++ .+|..+..+++|++|+|++|++++.+|..+..+.
T Consensus 188 s~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 188 STNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred cCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 999998 6666 554 67 99999999998 5787777799999999999999998888877654
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=2.1e-20 Score=179.87 Aligned_cols=197 Identities=21% Similarity=0.292 Sum_probs=162.0
Q ss_pred cccce-EecCCCCcEEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccc
Q 040379 69 KWTGV-GCSNRTGHVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFE 147 (373)
Q Consensus 69 ~w~~v-~c~~~~~~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~ 147 (373)
.|.++ .|. ..+++.++++++ .+++ +|..+ +++|++|++++|.++. +| ..+++|++|++++|+++
T Consensus 49 ~~~~l~~C~--~~~L~~L~Ls~n-----~L~~-lp~~l--~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~l~ 113 (571)
T 3cvr_A 49 AVSLLKECL--INQFSELQLNRL-----NLSS-LPDNL--PPQITVLEITQNALIS--LP---ELPASLEYLDACDNRLS 113 (571)
T ss_dssp HHHHHHHHH--HTTCSEEECCSS-----CCSC-CCSCC--CTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSCCS
T ss_pred hhhhccccc--cCCccEEEeCCC-----CCCc-cCHhH--cCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCCCC
Confidence 68888 785 347889999987 5554 66655 3889999999999993 66 45799999999999999
Q ss_pred cCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcc
Q 040379 148 GPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPL 227 (373)
Q Consensus 148 ~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 227 (373)
+ +|. +.. +|++|++++|.+.. .+. .+++|++|++++|.+++.+ . .+++|++|++++|.+++ +|.
T Consensus 114 ~-ip~-l~~--~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~l~~lp---~---~l~~L~~L~Ls~N~L~~-lp~ 177 (571)
T 3cvr_A 114 T-LPE-LPA--SLKHLDVDNNQLTM--LPE---LPALLEYINADNNQLTMLP---E---LPTSLEVLSVRNNQLTF-LPE 177 (571)
T ss_dssp C-CCC-CCT--TCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSCCC---C---CCTTCCEEECCSSCCSC-CCC
T ss_pred C-cch-hhc--CCCEEECCCCcCCC--CCC---cCccccEEeCCCCccCcCC---C---cCCCcCEEECCCCCCCC-cch
Confidence 6 777 665 99999999999944 222 6899999999999998753 2 57899999999999988 554
Q ss_pred cccCCCCCCccCEEECCCCcCCCCchhHHHhccccC-------cEEEccCccccccccccccCCCCCCEEEccCCcCccc
Q 040379 228 SLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNL-------VLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGG 300 (373)
Q Consensus 228 ~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L-------~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 300 (373)
+. ++|+.|++++|.++ .+|. +.. +| +.|++++|.++ .+|..+..+++|+.|+|++|.+++.
T Consensus 178 -l~-----~~L~~L~Ls~N~L~-~lp~-~~~---~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 178 -LP-----ESLEALDVSTNLLE-SLPA-VPV---RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp -CC-----TTCCEEECCSSCCS-SCCC-CC-----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred -hh-----CCCCEEECcCCCCC-chhh-HHH---hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCc
Confidence 43 79999999999998 6776 332 46 99999999999 6888888899999999999999998
Q ss_pred ccccccCC
Q 040379 301 VPDFFGNM 308 (373)
Q Consensus 301 ~~~~l~~l 308 (373)
.|..+..+
T Consensus 246 ~p~~l~~l 253 (571)
T 3cvr_A 246 IRESLSQQ 253 (571)
T ss_dssp HHHHHHHH
T ss_pred CHHHHHHh
Confidence 88877654
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=1.6e-20 Score=171.49 Aligned_cols=237 Identities=19% Similarity=0.153 Sum_probs=163.3
Q ss_pred CcccceEecCCC---------CcEEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCE
Q 040379 68 CKWTGVGCSNRT---------GHVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSY 138 (373)
Q Consensus 68 c~w~~v~c~~~~---------~~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~ 138 (373)
|.|..|.|++.. ..++.|+++++ .++...+..|.++++|++|++++|.+.+..-+..+.+++++++
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N-----~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~ 83 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLT-----KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE 83 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESC-----CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCE
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCC-----cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhh
Confidence 778888886421 35677777775 6664444578889999999999998865412345778888775
Q ss_pred -EeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCCEEEccC-ccCCCCcchhhhhCCC-CCCcEEE
Q 040379 139 -LDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGS-NNLSRSTDWLQVVGNL-PLLTTLY 215 (373)
Q Consensus 139 -L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~~l-~~L~~L~ 215 (373)
+.+++|++++..|..+..+++|++|++++|++.... ...+....++..+++.+ +.+...+. ..+..+ ..++.|+
T Consensus 84 ~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~l~~l~l~~~~~i~~l~~--~~f~~~~~~l~~L~ 160 (350)
T 4ay9_X 84 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP-DVHKIHSLQKVLLDIQDNINIHTIER--NSFVGLSFESVILW 160 (350)
T ss_dssp EEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCC-CCTTCCBSSCEEEEEESCTTCCEECT--TSSTTSBSSCEEEE
T ss_pred hhcccCCcccccCchhhhhccccccccccccccccCC-chhhcccchhhhhhhccccccccccc--cchhhcchhhhhhc
Confidence 556678888666777888999999999999884332 22344556777888765 34444321 334444 4688899
Q ss_pred ccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEEEccCC
Q 040379 216 LYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASN 295 (373)
Q Consensus 216 l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 295 (373)
+++|.++...+..+ .. .+|++++++++...+.+|...+..+++|+.|++++|+++ .+|. ..+.+|+.|.+.++
T Consensus 161 L~~N~i~~i~~~~f-~~---~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~--~~~~~L~~L~~l~~ 233 (350)
T 4ay9_X 161 LNKNGIQEIHNSAF-NG---TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPS--YGLENLKKLRARST 233 (350)
T ss_dssp CCSSCCCEECTTSS-TT---EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCS--SSCTTCCEEECTTC
T ss_pred cccccccCCChhhc-cc---cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccCh--hhhccchHhhhccC
Confidence 99998886444333 33 688899988654444788877777788999999999988 4443 23556777776665
Q ss_pred cCcccccccccCCCCCCeEeCcCCc
Q 040379 296 EFEGGVPDFFGNMCSLTMLNISDNK 320 (373)
Q Consensus 296 ~l~~~~~~~l~~l~~L~~L~L~~n~ 320 (373)
.--..+|. +..+++|+.+++.++.
T Consensus 234 ~~l~~lP~-l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 234 YNLKKLPT-LEKLVALMEASLTYPS 257 (350)
T ss_dssp TTCCCCCC-TTTCCSCCEEECSCHH
T ss_pred CCcCcCCC-chhCcChhhCcCCCCc
Confidence 44345663 6788899999987653
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=2.6e-20 Score=157.23 Aligned_cols=180 Identities=24% Similarity=0.269 Sum_probs=105.5
Q ss_pred CEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCCEEEcc
Q 040379 112 TYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLG 191 (373)
Q Consensus 112 ~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~ 191 (373)
+.++++++.++. +|..+ .++|++|++++|++++..+..+..+++|++|++++|++.. .....+..+++|++|+++
T Consensus 10 ~~v~c~~~~l~~--~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 10 TTVECYSQGRTS--VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TEEECCSSCCSS--CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECC
T ss_pred CEEEecCCCccC--CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc-cChhhcCCCCCcCEEECC
Confidence 466777777663 45443 3578888888888875555556777788888888777732 222335566666666666
Q ss_pred CccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCc
Q 040379 192 SNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSN 271 (373)
Q Consensus 192 ~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n 271 (373)
+|.+.+.+. ..+..+++|++|++++|.+++..+..+..+ ++ |+.|++++|
T Consensus 85 ~n~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l---~~-------------------------L~~L~l~~N 134 (208)
T 2o6s_A 85 TNQLQSLPN--GVFDKLTQLKELALNTNQLQSLPDGVFDKL---TQ-------------------------LKDLRLYQN 134 (208)
T ss_dssp SSCCCCCCT--TTTTTCTTCCEEECCSSCCCCCCTTTTTTC---TT-------------------------CCEEECCSS
T ss_pred CCcCCccCH--hHhcCccCCCEEEcCCCcCcccCHhHhccC---Cc-------------------------CCEEECCCC
Confidence 666654321 334455555555555555554433333333 44 555555555
Q ss_pred cccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccC
Q 040379 272 LLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLS 333 (373)
Q Consensus 272 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 333 (373)
.+++..+..+..+++|+.|++++|.+.+ .+++|++|+++.|+++|.+|..++.+.
T Consensus 135 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 135 QLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred ccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 5554344445566666666666665543 345666777777777776666555443
No 99
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.83 E-value=2.8e-19 Score=153.25 Aligned_cols=163 Identities=23% Similarity=0.204 Sum_probs=134.3
Q ss_pred CCCCCCcccceEecCCCCcEEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCc
Q 040379 63 EKRDCCKWTGVGCSNRTGHVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLS 142 (373)
Q Consensus 63 ~~~~~c~w~~v~c~~~~~~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~ 142 (373)
.+...|.|.++.|+.. .+ +.+|..+ .++|++|++++|.+++. .|..+..+++|++|+++
T Consensus 14 ~~~~~Cs~~~v~c~~~-----------------~l-~~ip~~~--~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~ 72 (229)
T 3e6j_A 14 PSQCSCSGTTVDCRSK-----------------RH-ASVPAGI--PTNAQILYLHDNQITKL-EPGVFDSLINLKELYLG 72 (229)
T ss_dssp CTTCEEETTEEECTTS-----------------CC-SSCCSCC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECC
T ss_pred CCCCEEeCCEeEccCC-----------------Cc-CccCCCC--CCCCCEEEcCCCccCcc-CHHHhhCccCCcEEECC
Confidence 4778899999999642 11 2344433 38899999999999985 78889999999999999
Q ss_pred CCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCC
Q 040379 143 FAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLP 222 (373)
Q Consensus 143 ~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 222 (373)
+|++.+..+..+..+++|++|++++|++.. .....+..+++|++|++++|++.. ++..+..+++|++|++++|.++
T Consensus 73 ~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~~l~~L~~L~Ls~N~l~~---lp~~~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 73 SNQLGALPVGVFDSLTQLTVLDLGTNQLTV-LPSAVFDRLVHLKELFMCCNKLTE---LPRGIERLTHLTHLALDQNQLK 148 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCS---CCTTGGGCTTCSEEECCSSCCC
T ss_pred CCCCCCcChhhcccCCCcCEEECCCCcCCc-cChhHhCcchhhCeEeccCCcccc---cCcccccCCCCCEEECCCCcCC
Confidence 999985555667899999999999999943 333457889999999999999986 5567789999999999999999
Q ss_pred CCCcccccCCCCCCccCEEECCCCcCCCCch
Q 040379 223 PIVPLSLSNLNYSTSLQFLELSENNLTNSIY 253 (373)
Q Consensus 223 ~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~ 253 (373)
+..+..+..+ ++|+.|++++|.+.+..+
T Consensus 149 ~~~~~~~~~l---~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 149 SIPHGAFDRL---SSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCCTTTTTTC---TTCCEEECTTSCBCTTBG
T ss_pred ccCHHHHhCC---CCCCEEEeeCCCccCCcc
Confidence 8777777777 899999999999886554
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=5.6e-20 Score=156.54 Aligned_cols=154 Identities=25% Similarity=0.253 Sum_probs=90.5
Q ss_pred CEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCc-ccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCc
Q 040379 186 TYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVP-LSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLV 264 (373)
Q Consensus 186 ~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~ 264 (373)
+++++++|.+..++ ..+ .+.+++|++++|.+++..+ ..+..+ ++|++|++++|.++ .+++..+..+++|+
T Consensus 14 ~~l~~s~n~l~~iP---~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l---~~L~~L~L~~N~i~-~i~~~~~~~l~~L~ 84 (220)
T 2v70_A 14 TTVDCSNQKLNKIP---EHI--PQYTAELRLNNNEFTVLEATGIFKKL---PQLRKINFSNNKIT-DIEEGAFEGASGVN 84 (220)
T ss_dssp TEEECCSSCCSSCC---SCC--CTTCSEEECCSSCCCEECCCCCGGGC---TTCCEEECCSSCCC-EECTTTTTTCTTCC
T ss_pred CEeEeCCCCcccCc---cCC--CCCCCEEEcCCCcCCccCchhhhccC---CCCCEEECCCCcCC-EECHHHhCCCCCCC
Confidence 46777777666532 222 2345666666666665533 234555 66666666666666 33333334444566
Q ss_pred EEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECc
Q 040379 265 LLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLE 344 (373)
Q Consensus 265 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~ 344 (373)
+|++++|.+++..+..+..+++|++|+|++|++++..|..+..+++|++|+|++|++++..|..+..++ +|+.|+++
T Consensus 85 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~---~L~~L~L~ 161 (220)
T 2v70_A 85 EILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH---SLSTLNLL 161 (220)
T ss_dssp EEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCT---TCCEEECC
T ss_pred EEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCC---CCCEEEec
Confidence 666666666655555566666666666666666665566666666666666666666655555444333 66666666
Q ss_pred CCcCccc
Q 040379 345 NNRLNGF 351 (373)
Q Consensus 345 ~n~l~~~ 351 (373)
+|++.+.
T Consensus 162 ~N~l~c~ 168 (220)
T 2v70_A 162 ANPFNCN 168 (220)
T ss_dssp SCCEECS
T ss_pred CcCCcCC
Confidence 6666544
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.83 E-value=1.2e-19 Score=176.45 Aligned_cols=175 Identities=26% Similarity=0.272 Sum_probs=132.1
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCC
Q 040379 105 LLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSS 184 (373)
Q Consensus 105 l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~ 184 (373)
+..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+++..| +..+++|++|+|++|.+.. ++.+..+++
T Consensus 39 ~~~L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~---l~~l~~l~~ 110 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD---LSSLKDLKK 110 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC---CTTSTTCTT
T ss_pred hhcCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC---ChhhccCCC
Confidence 4567888888888888874 33 47778888899998888885443 7888888888888888833 346788888
Q ss_pred CCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCc
Q 040379 185 LTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLV 264 (373)
Q Consensus 185 L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~ 264 (373)
|++|++++|.+.+. ..+..+++|+.|++++|.+.+. ..+..+ ++|+.|+|++|.+.+..| +..+++|+
T Consensus 111 L~~L~Ls~N~l~~l----~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l---~~L~~L~Ls~N~l~~~~~---l~~l~~L~ 178 (605)
T 1m9s_A 111 LKSLSLEHNGISDI----NGLVHLPQLESLYLGNNKITDI--TVLSRL---TKLDTLSLEDNQISDIVP---LAGLTKLQ 178 (605)
T ss_dssp CCEEECTTSCCCCC----GGGGGCTTCSEEECCSSCCCCC--GGGGSC---TTCSEEECCSSCCCCCGG---GTTCTTCC
T ss_pred CCEEEecCCCCCCC----ccccCCCccCEEECCCCccCCc--hhhccc---CCCCEEECcCCcCCCchh---hccCCCCC
Confidence 88888888888764 3477788888888888888765 456666 888888888888875444 44455688
Q ss_pred EEEccCccccccccccccCCCCCCEEEccCCcCcccc
Q 040379 265 LLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGV 301 (373)
Q Consensus 265 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 301 (373)
.|++++|.+++. + .+..+++|+.|+|++|.+.+..
T Consensus 179 ~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 179 NLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp EEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECCC
T ss_pred EEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCCc
Confidence 888888888753 3 5777888888888888877543
No 102
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.82 E-value=4.5e-22 Score=194.56 Aligned_cols=187 Identities=16% Similarity=0.167 Sum_probs=105.2
Q ss_pred CCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCC-CcccccCC---------------------------
Q 040379 181 HLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPI-VPLSLSNL--------------------------- 232 (373)
Q Consensus 181 ~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l--------------------------- 232 (373)
.+++|++|++++|.+.+. .+...+..+++|++|++++| +... .+.....+
T Consensus 287 ~~~~L~~L~L~~~~l~~~-~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l 364 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSY-DLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL 364 (594)
T ss_dssp HHTTCCEEECTTCCCCHH-HHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHH
T ss_pred hhCCCCEEEccCCCCCHH-HHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHH
Confidence 467888888888775432 23344556677777777665 2111 00001112
Q ss_pred ----CCCCccCEEECCCCcCCCCchhHHHhccccCcEEEcc--C----ccccc-----cccccccCCCCCCEEEccCCcC
Q 040379 233 ----NYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLD--S----NLLRG-----SIPVAFKHMVSVSFLGLASNEF 297 (373)
Q Consensus 233 ----~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~--~----n~l~~-----~~~~~l~~l~~L~~L~L~~n~l 297 (373)
..+++|++|+++.|.+++..+..+...+++|+.|+++ + +.+++ .++..+..+++|+.|++++ .+
T Consensus 365 ~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l 443 (594)
T 2p1m_B 365 VSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LL 443 (594)
T ss_dssp HHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SC
T ss_pred HHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cc
Confidence 0024555555555555544444444444556666666 2 33331 1122245566777777765 55
Q ss_pred cccccccccC-CCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCcccCch-hhhCCCCCCEEeCcCCCC
Q 040379 298 EGGVPDFFGN-MCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNN-SIGQMSKLRTLSLNGNSL 372 (373)
Q Consensus 298 ~~~~~~~l~~-l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l 372 (373)
++..+..+.. +++|++|++++|.+++..+..+. ..+++|++|++++|.+++.... ....+++|++|++++|++
T Consensus 444 ~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~--~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 444 TDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVL--SGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHH--HHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred cHHHHHHHHHhchhccEeeccCCCCcHHHHHHHH--hcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 5444444443 67788888888887664333331 2245888888888888655433 334578888888888876
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=1.1e-19 Score=161.46 Aligned_cols=172 Identities=26% Similarity=0.298 Sum_probs=113.1
Q ss_pred cCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCC
Q 040379 106 LQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSL 185 (373)
Q Consensus 106 ~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L 185 (373)
..+++|++|++++|.+.. ++ .+..+++|++|++++|++++. +. +..+++|++|++++|.+.. ++.+..+++|
T Consensus 43 ~~l~~L~~L~l~~~~i~~--~~-~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~---~~~l~~l~~L 114 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKD---LSSLKDLKKL 114 (291)
T ss_dssp HHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC---GGGGTTCTTC
T ss_pred hhcCcccEEEccCCCccc--Ch-hHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCC---ChhhccCCCC
Confidence 456777777777777764 33 366677777777777777743 33 7777777777777777732 3446777777
Q ss_pred CEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcE
Q 040379 186 TYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVL 265 (373)
Q Consensus 186 ~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~ 265 (373)
++|++++|.+.+. ..+..+++|++|++++|.+++. ..+..+ ++|++|++++|.+++. ++ +..+++|+.
T Consensus 115 ~~L~L~~n~i~~~----~~l~~l~~L~~L~l~~n~l~~~--~~l~~l---~~L~~L~L~~N~l~~~-~~--l~~l~~L~~ 182 (291)
T 1h6t_A 115 KSLSLEHNGISDI----NGLVHLPQLESLYLGNNKITDI--TVLSRL---TKLDTLSLEDNQISDI-VP--LAGLTKLQN 182 (291)
T ss_dssp CEEECTTSCCCCC----GGGGGCTTCCEEECCSSCCCCC--GGGGGC---TTCSEEECCSSCCCCC-GG--GTTCTTCCE
T ss_pred CEEECCCCcCCCC----hhhcCCCCCCEEEccCCcCCcc--hhhccC---CCCCEEEccCCccccc-hh--hcCCCccCE
Confidence 7777777777653 3456677777777777777654 345555 6777777777777643 22 334455777
Q ss_pred EEccCccccccccccccCCCCCCEEEccCCcCcc
Q 040379 266 LGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEG 299 (373)
Q Consensus 266 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 299 (373)
|++++|.+++ ++ .+..+++|+.|++++|.++.
T Consensus 183 L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 183 LYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp EECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred EECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 7777777664 33 36667777777777776654
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=1.1e-19 Score=161.49 Aligned_cols=193 Identities=20% Similarity=0.235 Sum_probs=154.1
Q ss_pred CCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEE
Q 040379 135 KLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTL 214 (373)
Q Consensus 135 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L 214 (373)
++..+.+..+.+.+..+ +..+++|++|++++|.+... +.+..+++|++|++++|.+.+.+ . +..+++|++|
T Consensus 25 ~~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~---~~~~~l~~L~~L~L~~n~l~~~~---~-l~~l~~L~~L 95 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV---QGIQYLPNVTKLFLNGNKLTDIK---P-LANLKNLGWL 95 (291)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCC---TTGGGCTTCCEEECCSSCCCCCG---G-GTTCTTCCEE
T ss_pred HHHHHHhcCCCcccccc--hhhcCcccEEEccCCCcccC---hhHhcCCCCCEEEccCCccCCCc---c-cccCCCCCEE
Confidence 34445566666664322 45789999999999998443 45788999999999999998753 3 8899999999
Q ss_pred EccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEEEccC
Q 040379 215 YLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLAS 294 (373)
Q Consensus 215 ~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 294 (373)
++++|.+++. ..+..+ ++|++|++++|.+++ ++ . +..+++|+.|++++|.+++. ..+..+++|+.|++++
T Consensus 96 ~l~~n~l~~~--~~l~~l---~~L~~L~L~~n~i~~-~~-~-l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~ 165 (291)
T 1h6t_A 96 FLDENKVKDL--SSLKDL---KKLKSLSLEHNGISD-IN-G-LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLED 165 (291)
T ss_dssp ECCSSCCCCG--GGGTTC---TTCCEEECTTSCCCC-CG-G-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred ECCCCcCCCC--hhhccC---CCCCEEECCCCcCCC-Ch-h-hcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccC
Confidence 9999999873 346666 999999999999985 33 3 34456699999999999864 5788999999999999
Q ss_pred CcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCcccCc
Q 040379 295 NEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTN 353 (373)
Q Consensus 295 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~ 353 (373)
|.+++..+ +..+++|++|++++|++++ ++. +..+++|+.|++++|+++....
T Consensus 166 N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~----l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 166 NQISDIVP--LAGLTKLQNLYLSKNHISD-LRA----LAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp SCCCCCGG--GTTCTTCCEEECCSSCCCB-CGG----GTTCTTCSEEEEEEEEEECCCE
T ss_pred Cccccchh--hcCCCccCEEECCCCcCCC-Chh----hccCCCCCEEECcCCcccCCcc
Confidence 99997555 8899999999999999985 332 4455699999999999887554
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=1.2e-19 Score=166.33 Aligned_cols=178 Identities=29% Similarity=0.305 Sum_probs=122.4
Q ss_pred CEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhhhC-CCCCCcEEEccCCCCCCCCcccccCCCCCCccC
Q 040379 161 QHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVG-NLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQ 239 (373)
Q Consensus 161 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~ 239 (373)
+.++++++.+.. .+..+ .+.+++|++++|.+.+.+ +..+. .+++|++|++++|.+++..+..+..+ ++|+
T Consensus 21 ~~l~c~~~~l~~--iP~~~--~~~l~~L~Ls~N~l~~l~--~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l---~~L~ 91 (361)
T 2xot_A 21 NILSCSKQQLPN--VPQSL--PSYTALLDLSHNNLSRLR--AEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV---PNLR 91 (361)
T ss_dssp TEEECCSSCCSS--CCSSC--CTTCSEEECCSSCCCEEC--TTSSSSCCTTCCEEECCSSCCCEECTTTTTTC---TTCC
T ss_pred CEEEeCCCCcCc--cCccC--CCCCCEEECCCCCCCccC--hhhhhhcccccCEEECCCCcCCccChhhccCC---CCCC
Confidence 578888888733 22222 245788888888887642 24455 78888888888888887666667777 7888
Q ss_pred EEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEEEccCCcCcccccccc---cCCCCCCeEeC
Q 040379 240 FLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFF---GNMCSLTMLNI 316 (373)
Q Consensus 240 ~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L 316 (373)
+|++++|.++ .++...+..+++|+.|++++|++++..|..+..+++|+.|+|++|.+++..+..+ ..+++|++|+|
T Consensus 92 ~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L 170 (361)
T 2xot_A 92 YLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDL 170 (361)
T ss_dssp EEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEEC
T ss_pred EEECCCCcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEEC
Confidence 8888888877 4555555556668888888888776667777777888888888888775444444 45777888888
Q ss_pred cCCcCcccCchhhhccCCCCc--cCEEECcCCcCccc
Q 040379 317 SDNKLRGHFPELIQNLSRFSS--LKELYLENNRLNGF 351 (373)
Q Consensus 317 ~~n~l~~~~p~~~~~l~~~~~--L~~L~L~~n~l~~~ 351 (373)
++|++++..+..+..++ . ++.|++++|++...
T Consensus 171 ~~N~l~~l~~~~~~~l~---~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 171 SSNKLKKLPLTDLQKLP---AWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CSSCCCCCCHHHHHHSC---HHHHTTEECCSSCEECC
T ss_pred CCCCCCccCHHHhhhcc---HhhcceEEecCCCccCC
Confidence 88877754445555544 4 36777777777543
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=2.7e-19 Score=152.31 Aligned_cols=153 Identities=21% Similarity=0.244 Sum_probs=92.4
Q ss_pred CEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcE
Q 040379 186 TYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVL 265 (373)
Q Consensus 186 ~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~ 265 (373)
+.++++++.+..++ ..+. +++++|++++|.+++..+..+..+ ++|++|++++|.+++..|. .+..+++|++
T Consensus 14 ~~v~c~~~~l~~iP---~~l~--~~l~~L~l~~n~i~~i~~~~~~~l---~~L~~L~Ls~N~i~~~~~~-~~~~l~~L~~ 84 (220)
T 2v9t_B 14 NIVDCRGKGLTEIP---TNLP--ETITEIRLEQNTIKVIPPGAFSPY---KKLRRIDLSNNQISELAPD-AFQGLRSLNS 84 (220)
T ss_dssp TEEECTTSCCSSCC---SSCC--TTCCEEECCSSCCCEECTTSSTTC---TTCCEEECCSSCCCEECTT-TTTTCSSCCE
T ss_pred CEEEcCCCCcCcCC---CccC--cCCCEEECCCCcCCCcCHhHhhCC---CCCCEEECCCCcCCCcCHH-HhhCCcCCCE
Confidence 56777777666532 2221 567777777777766555566665 6777777777776633233 3334444666
Q ss_pred EEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcC
Q 040379 266 LGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLEN 345 (373)
Q Consensus 266 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~ 345 (373)
|++++|.+++..+..+..+++|++|+|++|.+++..|..+..+++|++|+|++|++++..+..+..++ +|+.|++++
T Consensus 85 L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~---~L~~L~L~~ 161 (220)
T 2v9t_B 85 LVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR---AIQTMHLAQ 161 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT---TCCEEECCS
T ss_pred EECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCC---CCCEEEeCC
Confidence 66666666644444456666666666666666666666666666666666666666654444343333 666666666
Q ss_pred CcCcc
Q 040379 346 NRLNG 350 (373)
Q Consensus 346 n~l~~ 350 (373)
|++..
T Consensus 162 N~~~c 166 (220)
T 2v9t_B 162 NPFIC 166 (220)
T ss_dssp SCEEC
T ss_pred CCcCC
Confidence 66644
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=3.1e-19 Score=173.47 Aligned_cols=193 Identities=18% Similarity=0.241 Sum_probs=150.7
Q ss_pred CCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCCE
Q 040379 108 LHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTY 187 (373)
Q Consensus 108 l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 187 (373)
+..+..+.+..+.+.+. . .+..+++|+.|++++|.+. .+| .+..+++|+.|+|++|.+.. .++ +..+++|++
T Consensus 20 l~~l~~l~l~~~~i~~~-~--~~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~--~~~-l~~l~~L~~ 91 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDA-V--TQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTD--IKP-LTNLKNLGW 91 (605)
T ss_dssp HHHHHHHHTTCSCTTSE-E--CHHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCC--CGG-GGGCTTCCE
T ss_pred HHHHHHHhccCCCcccc-c--chhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCC--Chh-hccCCCCCE
Confidence 33455567777776643 2 2456889999999999987 455 58889999999999999843 223 889999999
Q ss_pred EEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEE
Q 040379 188 LDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLG 267 (373)
Q Consensus 188 L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~ 267 (373)
|++++|.+.+. ..+..+++|++|++++|.+.+. ..+..+ ++|+.|++++|.+++. . .+..+++|+.|+
T Consensus 92 L~Ls~N~l~~l----~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l---~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~ 159 (605)
T 1m9s_A 92 LFLDENKIKDL----SSLKDLKKLKSLSLEHNGISDI--NGLVHL---PQLESLYLGNNKITDI--T-VLSRLTKLDTLS 159 (605)
T ss_dssp EECCSSCCCCC----TTSTTCTTCCEEECTTSCCCCC--GGGGGC---TTCSEEECCSSCCCCC--G-GGGSCTTCSEEE
T ss_pred EECcCCCCCCC----hhhccCCCCCEEEecCCCCCCC--ccccCC---CccCEEECCCCccCCc--h-hhcccCCCCEEE
Confidence 99999998874 3678899999999999998863 346666 8999999999998853 2 344556699999
Q ss_pred ccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCccc
Q 040379 268 LDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGH 324 (373)
Q Consensus 268 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 324 (373)
+++|.+++..| +..+++|+.|+|++|.+++. ..+..+++|+.|+|++|++.+.
T Consensus 160 Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 160 LEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 99999886655 78888999999999988853 3578888999999999988754
No 108
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.80 E-value=1.3e-21 Score=191.40 Aligned_cols=282 Identities=15% Similarity=0.124 Sum_probs=148.7
Q ss_pred CcEEEEEcCCCCCCCCCcceecCcccc-CCCCCCEEeCCCC-CCCCCCCccccCCCCCCCEEeCcCCccccCccccc---
Q 040379 80 GHVIKLEIQPIDFDSFPLRGTISPALL-QLHRLTYLDLSLN-NFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHL--- 154 (373)
Q Consensus 80 ~~v~~l~l~~~~l~~~~l~~~~~~~l~-~l~~L~~L~l~~n-~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l--- 154 (373)
.+++.++++++ .+.+..+..+. .+++|++|++++| .++...++.....+++|++|++++|.+++..+..+
T Consensus 105 ~~L~~L~L~~~-----~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 179 (594)
T 2p1m_B 105 TWLEEIRLKRM-----VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF 179 (594)
T ss_dssp TTCCEEEEESC-----BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred CCCCeEEeeCc-----EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence 35667777765 34443334443 4566666666666 33322133333456666666666666554332222
Q ss_pred -CCCCCCCEEEccCCC--CCCCCCCcccCCCCCCCEEEccCc------------------------c-------------
Q 040379 155 -GNLSALQHLDLSLNH--LFSAGNLDWLSHLSSLTYLDLGSN------------------------N------------- 194 (373)
Q Consensus 155 -~~l~~L~~L~L~~n~--~~~~~~~~~~~~l~~L~~L~l~~n------------------------~------------- 194 (373)
..+++|++|++++|. +........+..+++|++|++++| .
T Consensus 180 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 259 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV 259 (594)
T ss_dssp CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHH
Confidence 245566666666554 100000011223455555555544 1
Q ss_pred -------------CCCC--cchhhhhCCCCCCcEEEccCCCCCCCCccc-ccCCCCCCccCEEECCCCcCCCCchhHHHh
Q 040379 195 -------------LSRS--TDWLQVVGNLPLLTTLYLYRCHLPPIVPLS-LSNLNYSTSLQFLELSENNLTNSIYPWLFN 258 (373)
Q Consensus 195 -------------~~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~ 258 (373)
+... ..++.....+++|++|++++|.+++..... +..+ ++|++|++++| +.+.....+..
T Consensus 260 ~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~---~~L~~L~l~~~-~~~~~l~~l~~ 335 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQC---PKLQRLWVLDY-IEDAGLEVLAS 335 (594)
T ss_dssp HHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTC---TTCCEEEEEGG-GHHHHHHHHHH
T ss_pred HHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcC---CCcCEEeCcCc-cCHHHHHHHHH
Confidence 1000 112233346789999999999866432222 3344 67777777766 33222233333
Q ss_pred ccccCcEEEc----------------------------------cCcccccccccccc-CCCCCCEEEcc--C----CcC
Q 040379 259 ASSNLVLLGL----------------------------------DSNLLRGSIPVAFK-HMVSVSFLGLA--S----NEF 297 (373)
Q Consensus 259 ~~~~L~~L~l----------------------------------~~n~l~~~~~~~l~-~l~~L~~L~L~--~----n~l 297 (373)
.+++|+.|++ +.+.+++..+..+. .+++|+.|+++ + +.+
T Consensus 336 ~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l 415 (594)
T 2p1m_B 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYL 415 (594)
T ss_dssp HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTT
T ss_pred hCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccc
Confidence 3444555555 33333332222222 35666666666 2 334
Q ss_pred cc-----cccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCcccCchhh-hCCCCCCEEeCcCCC
Q 040379 298 EG-----GVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSI-GQMSKLRTLSLNGNS 371 (373)
Q Consensus 298 ~~-----~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~ 371 (373)
++ .++..+..+++|++|++++ .+++..+..+.. .+++|+.|++++|.+++..+..+ .++++|++|++++|+
T Consensus 416 ~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~--~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~ 492 (594)
T 2p1m_B 416 TLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGT--YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP 492 (594)
T ss_dssp TCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHH--HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCS
T ss_pred cCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHH--hchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCC
Confidence 31 1122244566777777765 555443333333 24489999999999877665555 668999999999998
Q ss_pred CC
Q 040379 372 LI 373 (373)
Q Consensus 372 lt 373 (373)
++
T Consensus 493 ~~ 494 (594)
T 2p1m_B 493 FG 494 (594)
T ss_dssp CC
T ss_pred Cc
Confidence 64
No 109
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.79 E-value=7.6e-23 Score=197.65 Aligned_cols=205 Identities=20% Similarity=0.205 Sum_probs=137.4
Q ss_pred CCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCC------------CCCCCcccCCCCCCCEEE-ccCccCCC
Q 040379 131 GSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLF------------SAGNLDWLSHLSSLTYLD-LGSNNLSR 197 (373)
Q Consensus 131 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~------------~~~~~~~~~~l~~L~~L~-l~~n~~~~ 197 (373)
..+++|+.|++++|++. .+|..++++++|+.|++++|... ....+..+..+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 45778888888888887 77888888888888888665410 001112334444444444 3333221
Q ss_pred CcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccc
Q 040379 198 STDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSI 277 (373)
Q Consensus 198 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 277 (373)
.|+.+.+.+|.++...+ ..|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+
T Consensus 424 ------------~L~~l~l~~n~i~~l~~---------~~L~~L~Ls~n~l~~-lp~--~~~l~~L~~L~Ls~N~l~-~l 478 (567)
T 1dce_A 424 ------------DLRSKFLLENSVLKMEY---------ADVRVLHLAHKDLTV-LCH--LEQLLLVTHLDLSHNRLR-AL 478 (567)
T ss_dssp ------------HHHHHHHHHHHHHHHHH---------TTCSEEECTTSCCSS-CCC--GGGGTTCCEEECCSSCCC-CC
T ss_pred ------------hhhhhhhhcccccccCc---------cCceEEEecCCCCCC-CcC--ccccccCcEeecCccccc-cc
Confidence 12222223333222111 357778888888774 554 444556888888888888 77
Q ss_pred cccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccC-chhhhccCCCCccCEEECcCCcCcccCch--
Q 040379 278 PVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHF-PELIQNLSRFSSLKELYLENNRLNGFTNN-- 354 (373)
Q Consensus 278 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~~~~L~~L~L~~n~l~~~~~~-- 354 (373)
|..++.+++|+.|+|++|.+++ +| .++.+++|++|+|++|++++.. |..+..++ +|+.|++++|++++.++.
T Consensus 479 p~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~---~L~~L~L~~N~l~~~~~~~~ 553 (567)
T 1dce_A 479 PPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCP---RLVLLNLQGNSLCQEEGIQE 553 (567)
T ss_dssp CGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCT---TCCEEECTTSGGGGSSSCTT
T ss_pred chhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCC---CCCEEEecCCcCCCCccHHH
Confidence 8888888889999999988886 56 7888889999999999888765 77776665 888999999988887653
Q ss_pred -hhhCCCCCCEEeC
Q 040379 355 -SIGQMSKLRTLSL 367 (373)
Q Consensus 355 -~~~~l~~L~~L~l 367 (373)
.+..+++|+.|++
T Consensus 554 ~l~~~lp~L~~L~l 567 (567)
T 1dce_A 554 RLAEMLPSVSSILT 567 (567)
T ss_dssp HHHHHCTTCSEEEC
T ss_pred HHHHHCcccCccCC
Confidence 2345788888864
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.79 E-value=7.7e-19 Score=146.88 Aligned_cols=151 Identities=13% Similarity=0.198 Sum_probs=100.3
Q ss_pred CCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCC
Q 040379 208 LPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSV 287 (373)
Q Consensus 208 l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L 287 (373)
+++|++|++++|.+.. +| .+..+ ++|++|++++|.++ .+ +. +..+++|++|++++|.+++..+..++.+++|
T Consensus 43 l~~L~~L~l~~n~i~~-l~-~l~~l---~~L~~L~l~~n~~~-~~-~~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 43 MNSLTYITLANINVTD-LT-GIEYA---HNIKDLTINNIHAT-NY-NP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHTCCEEEEESSCCSC-CT-TGGGC---TTCSEEEEESCCCS-CC-GG-GTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred cCCccEEeccCCCccC-hH-HHhcC---CCCCEEEccCCCCC-cc-hh-hhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 4445555555555542 22 34444 56666666666544 22 22 2234457777777777776667777888888
Q ss_pred CEEEccCCcCcccccccccCCCCCCeEeCcCCc-CcccCchhhhccCCCCccCEEECcCCcCcccCchhhhCCCCCCEEe
Q 040379 288 SFLGLASNEFEGGVPDFFGNMCSLTMLNISDNK-LRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQMSKLRTLS 366 (373)
Q Consensus 288 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 366 (373)
++|++++|.+++..+..+..+++|++|++++|+ ++ .+| .+.. +++|++|++++|.+++.. .+..+++|+.|+
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~---l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~ 187 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKT---LPELKSLNIQFDGVHDYR--GIEDFPKLNQLY 187 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGG---CSSCCEEECTTBCCCCCT--TGGGCSSCCEEE
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcC---CCCCCEEECCCCCCcChH--HhccCCCCCEEE
Confidence 888888888887777778888888888888887 54 444 3443 448888888888887744 577888888888
Q ss_pred CcCCCCC
Q 040379 367 LNGNSLI 373 (373)
Q Consensus 367 l~~n~lt 373 (373)
+++|++.
T Consensus 188 l~~N~i~ 194 (197)
T 4ezg_A 188 AFSQTIG 194 (197)
T ss_dssp ECBC---
T ss_pred eeCcccC
Confidence 8888763
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=2.6e-18 Score=147.12 Aligned_cols=157 Identities=23% Similarity=0.257 Sum_probs=123.4
Q ss_pred CCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccC
Q 040379 184 SLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNL 263 (373)
Q Consensus 184 ~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L 263 (373)
.-+.++.+++.+..++ ..+ .++|++|++++|.+++..|..+..+ ++|++|++++|.+. .++...+..+++|
T Consensus 20 s~~~v~c~~~~l~~ip---~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l---~~L~~L~L~~N~l~-~i~~~~~~~l~~L 90 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVP---AGI--PTNAQILYLHDNQITKLEPGVFDSL---INLKELYLGSNQLG-ALPVGVFDSLTQL 90 (229)
T ss_dssp ETTEEECTTSCCSSCC---SCC--CTTCSEEECCSSCCCCCCTTTTTTC---TTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred eCCEeEccCCCcCccC---CCC--CCCCCEEEcCCCccCccCHHHhhCc---cCCcEEECCCCCCC-CcChhhcccCCCc
Confidence 3567888888877643 222 3789999999999998888888887 88999999999986 6676666667779
Q ss_pred cEEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEEC
Q 040379 264 VLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYL 343 (373)
Q Consensus 264 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L 343 (373)
+.|++++|++++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+.. +++|+.|++
T Consensus 91 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~---l~~L~~L~l 166 (229)
T 3e6j_A 91 TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDR---LSSLTHAYL 166 (229)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTT---CTTCCEEEC
T ss_pred CEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhC---CCCCCEEEe
Confidence 99999999888766667788889999999999888 67777888889999999999888554444444 448889999
Q ss_pred cCCcCcccCc
Q 040379 344 ENNRLNGFTN 353 (373)
Q Consensus 344 ~~n~l~~~~~ 353 (373)
++|++.+..+
T Consensus 167 ~~N~~~c~c~ 176 (229)
T 3e6j_A 167 FGNPWDCECR 176 (229)
T ss_dssp TTSCBCTTBG
T ss_pred eCCCccCCcc
Confidence 9988876543
No 112
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.78 E-value=4.1e-20 Score=183.92 Aligned_cols=263 Identities=21% Similarity=0.203 Sum_probs=132.9
Q ss_pred CCcHHHHHHHHHHhhcCCCC-CCCCCCCCCCCCCCCCCcccceEecCCCCcEEEEEcCCCCCCCCCcceecCccccCCCC
Q 040379 32 RCIDEEREALLTFKESLVDE-SGVLSSWGPEDEKRDCCKWTGVGCSNRTGHVIKLEIQPIDFDSFPLRGTISPALLQLHR 110 (373)
Q Consensus 32 ~~~~~~~~~l~~~~~~~~~~-~~~~~~w~~~~~~~~~c~w~~v~c~~~~~~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~ 110 (373)
...+.++.++.++..+...+ +.....|.. .....+.|.+..++. ++++.+++..+ .+.. .+..+.....
T Consensus 128 s~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~--~~~~~l~L~~n-----~~~~-~~~~~l~~l~ 197 (727)
T 4b8c_D 128 SLVDCTKQALMEMADTLTDSKTAKKQQPTG--DSTPSGTATNSAVST--PLTPKIELFAN-----GKDE-ANQALLQHKK 197 (727)
T ss_dssp ----CCCHHHHHHHHHHHHHHTTC--------------------------------------------------------
T ss_pred hccccchhhhhhhhhhcccccCcccCCCcC--CCCccccCCCceecC--CccceEEeeCC-----CCCc-chhhHhhcCc
Confidence 34566788888888776422 222335643 345567788877753 67888888775 3332 2333333333
Q ss_pred CCEEe-----CCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCC
Q 040379 111 LTYLD-----LSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSL 185 (373)
Q Consensus 111 L~~L~-----l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L 185 (373)
|+.+. ++.|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.+. ..+..+.++++|
T Consensus 198 Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L 272 (727)
T 4b8c_D 198 LSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNL 272 (727)
T ss_dssp --------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTC
T ss_pred cCcccccCcccccccee--cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCC
Confidence 33333 2333333 25677888999999999999998 78888889999999999999994 455678999999
Q ss_pred CEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcE
Q 040379 186 TYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVL 265 (373)
Q Consensus 186 ~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~ 265 (373)
++|+|++|.++. ++..++.+++|++|++++|.++ .+|..++.+ ++|++|+|++|.+++.+|..+.........
T Consensus 273 ~~L~Ls~N~l~~---lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l---~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~ 345 (727)
T 4b8c_D 273 RVLDLSHNRLTS---LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNL---CNLQFLGVEGNPLEKQFLKILTEKSVTGLI 345 (727)
T ss_dssp CEEECTTSCCSS---CCSSGGGGTTCSEEECCSSCCC-CCCSSTTSC---TTCCCEECTTSCCCSHHHHHHHHHHHHHHH
T ss_pred CEEeCcCCcCCc---cChhhcCCCCCCEEECCCCCCC-ccChhhhcC---CCccEEeCCCCccCCCChHHHhhcchhhhH
Confidence 999999999985 5678899999999999999997 567778888 999999999999998877766554333445
Q ss_pred EEccCccccccccccccCCCCCCEEEccCC--------cCcccccccccCCCCCCeEeCcCCcCc
Q 040379 266 LGLDSNLLRGSIPVAFKHMVSVSFLGLASN--------EFEGGVPDFFGNMCSLTMLNISDNKLR 322 (373)
Q Consensus 266 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n--------~l~~~~~~~l~~l~~L~~L~L~~n~l~ 322 (373)
+++++|.+++.+|.. |+.|+++.| .+.+..+..+..+..+....+++|-+.
T Consensus 346 l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 346 FYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp HHHHHCCCCCCCCCC-----------------------------------------------CCC
T ss_pred HhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 789999999887764 455666666 333333444455666677777777664
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=3.5e-18 Score=145.38 Aligned_cols=116 Identities=21% Similarity=0.268 Sum_probs=78.8
Q ss_pred hhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccC
Q 040379 204 VVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKH 283 (373)
Q Consensus 204 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 283 (373)
.+..+++|++|++++|.+++..|..+..+ ++|++|++++|.++ .+|...+..+++|+.|++++|++++..|..+..
T Consensus 51 ~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l---~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~ 126 (220)
T 2v9t_B 51 AFSPYKKLRRIDLSNNQISELAPDAFQGL---RSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQD 126 (220)
T ss_dssp SSTTCTTCCEEECCSSCCCEECTTTTTTC---SSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred HhhCCCCCCEEECCCCcCCCcCHHHhhCC---cCCCEEECCCCcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCC
Confidence 34445555555555555555555555555 66666666666666 455555555556777777777777666777777
Q ss_pred CCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcc
Q 040379 284 MVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRG 323 (373)
Q Consensus 284 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 323 (373)
+++|+.|+|++|.+++..+..+..+++|++|++++|.+..
T Consensus 127 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 127 LHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 8888888888888887666677778888888888887764
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=2.7e-18 Score=157.30 Aligned_cols=179 Identities=23% Similarity=0.240 Sum_probs=145.1
Q ss_pred CCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccC-CCCCCCEEEccCccCCCCcchhhhhCCCCCCcEE
Q 040379 136 LSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLS-HLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTL 214 (373)
Q Consensus 136 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L 214 (373)
-+.+++++++++ .+|..+. +.++.|++++|.+... ....+. .+++|++|++++|.+...+ +..+..+++|++|
T Consensus 20 ~~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l-~~~~~~~~l~~L~~L~L~~N~i~~i~--~~~~~~l~~L~~L 93 (361)
T 2xot_A 20 SNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRL-RAEWTPTRLTNLHSLLLSHNHLNFIS--SEAFVPVPNLRYL 93 (361)
T ss_dssp TTEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEE-CTTSSSSCCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEE
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCcc-ChhhhhhcccccCEEECCCCcCCccC--hhhccCCCCCCEE
Confidence 368999999998 6787654 5689999999999432 334455 8999999999999998753 3678999999999
Q ss_pred EccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccc---cCCCCCCEEE
Q 040379 215 YLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAF---KHMVSVSFLG 291 (373)
Q Consensus 215 ~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~ 291 (373)
++++|.++...+..+..+ ++|++|++++|.+++ +++..+..+++|+.|++++|++++..+..+ ..+++|+.|+
T Consensus 94 ~Ls~N~l~~~~~~~~~~l---~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~ 169 (361)
T 2xot_A 94 DLSSNHLHTLDEFLFSDL---QALEVLLLYNNHIVV-VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLD 169 (361)
T ss_dssp ECCSSCCCEECTTTTTTC---TTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEE
T ss_pred ECCCCcCCcCCHHHhCCC---cCCCEEECCCCcccE-ECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEE
Confidence 999999998777778888 999999999999984 444455666779999999999996444444 5789999999
Q ss_pred ccCCcCcccccccccCCCC--CCeEeCcCCcCccc
Q 040379 292 LASNEFEGGVPDFFGNMCS--LTMLNISDNKLRGH 324 (373)
Q Consensus 292 L~~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~ 324 (373)
|++|.+++..+..+..++. ++.|++++|.+...
T Consensus 170 L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 170 LSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred CCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 9999999766677888877 48999999998753
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=4.6e-18 Score=144.66 Aligned_cols=55 Identities=27% Similarity=0.316 Sum_probs=25.2
Q ss_pred CEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcc-cccCCCCCCCEEEccCCCC
Q 040379 112 TYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIP-SHLGNLSALQHLDLSLNHL 170 (373)
Q Consensus 112 ~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~~ 170 (373)
+++++++|.++. +|..+. ..+++|++++|++++..| ..+..+++|++|++++|.+
T Consensus 14 ~~l~~s~n~l~~--iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i 69 (220)
T 2v70_A 14 TTVDCSNQKLNK--IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI 69 (220)
T ss_dssp TEEECCSSCCSS--CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCC
T ss_pred CEeEeCCCCccc--CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcC
Confidence 355555555552 343332 234555555555553322 2234444444444444444
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=5e-18 Score=141.91 Aligned_cols=153 Identities=16% Similarity=0.145 Sum_probs=72.0
Q ss_pred CCCCCCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCC
Q 040379 156 NLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYS 235 (373)
Q Consensus 156 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~ 235 (373)
.+++|++|++++|.+.. .+.+..+++|++|++++|.+... ..+..+++|++|++++|.+++..+..++.+
T Consensus 42 ~l~~L~~L~l~~n~i~~---l~~l~~l~~L~~L~l~~n~~~~~----~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l--- 111 (197)
T 4ezg_A 42 QMNSLTYITLANINVTD---LTGIEYAHNIKDLTINNIHATNY----NPISGLSNLERLRIMGKDVTSDKIPNLSGL--- 111 (197)
T ss_dssp HHHTCCEEEEESSCCSC---CTTGGGCTTCSEEEEESCCCSCC----GGGTTCTTCCEEEEECTTCBGGGSCCCTTC---
T ss_pred hcCCccEEeccCCCccC---hHHHhcCCCCCEEEccCCCCCcc----hhhhcCCCCCEEEeECCccCcccChhhcCC---
Confidence 33444555555544421 11344445555555555543321 244555556666666655555445455555
Q ss_pred CccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEe
Q 040379 236 TSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLN 315 (373)
Q Consensus 236 ~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 315 (373)
++|++|++++|.+++..+..+. .+++|+.|++++|...+.+| .+..+++|+.|++++|.+++ ++ .+..+++|++|+
T Consensus 112 ~~L~~L~Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~ 187 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDSILTKIN-TLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLY 187 (197)
T ss_dssp TTCCEEECCSSBCBGGGHHHHT-TCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEE
T ss_pred CCCCEEEecCCccCcHhHHHHh-hCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEE
Confidence 6666666666666543333332 22335555555554111333 34455555555555555543 22 344445555555
Q ss_pred CcCCcCc
Q 040379 316 ISDNKLR 322 (373)
Q Consensus 316 L~~n~l~ 322 (373)
+++|++.
T Consensus 188 l~~N~i~ 194 (197)
T 4ezg_A 188 AFSQTIG 194 (197)
T ss_dssp ECBC---
T ss_pred eeCcccC
Confidence 5555443
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.76 E-value=9.7e-22 Score=189.93 Aligned_cols=207 Identities=19% Similarity=0.113 Sum_probs=161.6
Q ss_pred cCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCc-------------cccCcccccCCCCCCCEEE-ccCCCCC
Q 040379 106 LQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAE-------------FEGPIPSHLGNLSALQHLD-LSLNHLF 171 (373)
Q Consensus 106 ~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~-------------l~~~~p~~l~~l~~L~~L~-L~~n~~~ 171 (373)
..+++|+.|++++|.++ .+|..++.+++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~--~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~- 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST--VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL- 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH--HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH-
T ss_pred ccCccceeccCChhhHH--hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc-
Confidence 56889999999999987 489999999999999997764 5567777888888898888 666544
Q ss_pred CCCCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCC
Q 040379 172 SAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNS 251 (373)
Q Consensus 172 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~ 251 (373)
..|+.+.+++|.+... +. ..|+.|++++|.+++ +|. ++.+ ++|+.|++++|.++ .
T Consensus 423 -----------~~L~~l~l~~n~i~~l---~~-----~~L~~L~Ls~n~l~~-lp~-~~~l---~~L~~L~Ls~N~l~-~ 477 (567)
T 1dce_A 423 -----------DDLRSKFLLENSVLKM---EY-----ADVRVLHLAHKDLTV-LCH-LEQL---LLVTHLDLSHNRLR-A 477 (567)
T ss_dssp -----------HHHHHHHHHHHHHHHH---HH-----TTCSEEECTTSCCSS-CCC-GGGG---TTCCEEECCSSCCC-C
T ss_pred -----------chhhhhhhhccccccc---Cc-----cCceEEEecCCCCCC-CcC-cccc---ccCcEeecCccccc-c
Confidence 3455566666665542 11 248889999998887 454 7777 89999999999998 7
Q ss_pred chhHHHhccccCcEEEccCccccccccccccCCCCCCEEEccCCcCcccc-cccccCCCCCCeEeCcCCcCcccCchhhh
Q 040379 252 IYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGV-PDFFGNMCSLTMLNISDNKLRGHFPELIQ 330 (373)
Q Consensus 252 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 330 (373)
+|..+.. +++|+.|++++|.+++ +| .++.+++|+.|+|++|.+++.. |..+..+++|++|++++|++++..|....
T Consensus 478 lp~~~~~-l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 554 (567)
T 1dce_A 478 LPPALAA-LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER 554 (567)
T ss_dssp CCGGGGG-CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTH
T ss_pred cchhhhc-CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHH
Confidence 8876554 4559999999999986 66 7899999999999999999776 88999999999999999999876553322
Q ss_pred ccCCCCccCEEEC
Q 040379 331 NLSRFSSLKELYL 343 (373)
Q Consensus 331 ~l~~~~~L~~L~L 343 (373)
....+++|+.|++
T Consensus 555 l~~~lp~L~~L~l 567 (567)
T 1dce_A 555 LAEMLPSVSSILT 567 (567)
T ss_dssp HHHHCTTCSEEEC
T ss_pred HHHHCcccCccCC
Confidence 2223458888864
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=8.3e-19 Score=153.45 Aligned_cols=171 Identities=19% Similarity=0.270 Sum_probs=125.6
Q ss_pred CCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCC
Q 040379 107 QLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLT 186 (373)
Q Consensus 107 ~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 186 (373)
.+.+++.++++++.+++ ++ .+..+++|++|++++|.++ .+| .+..+++|++|++++|++... ++ +..+++|+
T Consensus 17 ~l~~l~~l~l~~~~i~~--~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~--~~-l~~l~~L~ 88 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD--LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL--SP-LKDLTKLE 88 (263)
T ss_dssp HHHHHHHHHHTCSCTTS--EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC--GG-GTTCSSCC
T ss_pred HHHHHHHHHhcCCCccc--cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC--hh-hccCCCCC
Confidence 35566777888888874 33 4667889999999999887 455 678888999999999988432 23 78888899
Q ss_pred EEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEE
Q 040379 187 YLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLL 266 (373)
Q Consensus 187 ~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L 266 (373)
+|++++|++.+.+. +.. ++|++|++++|.+++. ..+..+ ++|++|++++|.+++ ++ . +..+++|+.|
T Consensus 89 ~L~L~~N~l~~l~~----~~~-~~L~~L~L~~N~l~~~--~~l~~l---~~L~~L~Ls~N~i~~-~~-~-l~~l~~L~~L 155 (263)
T 1xeu_A 89 ELSVNRNRLKNLNG----IPS-ACLSRLFLDNNELRDT--DSLIHL---KNLEILSIRNNKLKS-IV-M-LGFLSKLEVL 155 (263)
T ss_dssp EEECCSSCCSCCTT----CCC-SSCCEEECCSSCCSBS--GGGTTC---TTCCEEECTTSCCCB-CG-G-GGGCTTCCEE
T ss_pred EEECCCCccCCcCc----ccc-CcccEEEccCCccCCC--hhhcCc---ccccEEECCCCcCCC-Ch-H-HccCCCCCEE
Confidence 99999988877533 222 7888888888888763 245555 888888888888874 33 2 3345558888
Q ss_pred EccCccccccccccccCCCCCCEEEccCCcCccc
Q 040379 267 GLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGG 300 (373)
Q Consensus 267 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 300 (373)
++++|++++. ..+..+++|+.|++++|.+++.
T Consensus 156 ~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 156 DLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 8888887755 5577778888888888877754
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=2.9e-18 Score=150.03 Aligned_cols=152 Identities=21% Similarity=0.244 Sum_probs=117.2
Q ss_pred cccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCC
Q 040379 104 ALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLS 183 (373)
Q Consensus 104 ~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 183 (373)
.+..+++|++|++++|.++. ++ .+..+++|++|++++|++++. |. +..+++|++|++++|++..... +.. +
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~l~~---~~~-~ 106 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKNLNG---IPS-A 106 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSCCTT---CCC-S
T ss_pred chhhcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCCcCc---ccc-C
Confidence 46778889999999998874 44 577888999999999988854 44 8888999999999998844322 333 8
Q ss_pred CCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccC
Q 040379 184 SLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNL 263 (373)
Q Consensus 184 ~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L 263 (373)
+|++|++++|.+.+. ..+..+++|++|++++|.+++. + .+..+ ++|++|++++|.+++. ..+..+++|
T Consensus 107 ~L~~L~L~~N~l~~~----~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l---~~L~~L~L~~N~i~~~---~~l~~l~~L 174 (263)
T 1xeu_A 107 CLSRLFLDNNELRDT----DSLIHLKNLEILSIRNNKLKSI-V-MLGFL---SKLEVLDLHGNEITNT---GGLTRLKKV 174 (263)
T ss_dssp SCCEEECCSSCCSBS----GGGTTCTTCCEEECTTSCCCBC-G-GGGGC---TTCCEEECTTSCCCBC---TTSTTCCCC
T ss_pred cccEEEccCCccCCC----hhhcCcccccEEECCCCcCCCC-h-HHccC---CCCCEEECCCCcCcch---HHhccCCCC
Confidence 899999999988764 3578888999999999988875 3 56666 8899999999988854 223445568
Q ss_pred cEEEccCcccccc
Q 040379 264 VLLGLDSNLLRGS 276 (373)
Q Consensus 264 ~~L~l~~n~l~~~ 276 (373)
+.|++++|.+++.
T Consensus 175 ~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 175 NWIDLTGQKCVNE 187 (263)
T ss_dssp CEEEEEEEEEECC
T ss_pred CEEeCCCCcccCC
Confidence 9999999888754
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=1.4e-17 Score=138.51 Aligned_cols=132 Identities=28% Similarity=0.309 Sum_probs=86.7
Q ss_pred cEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEEE
Q 040379 212 TTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLG 291 (373)
Q Consensus 212 ~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 291 (373)
+.+++++++++. +|..+. .++++|++++|.+++..+...+..+++|++|++++|++++..|..+..+++|++|+
T Consensus 11 ~~l~~s~~~l~~-ip~~~~-----~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 11 TTVDCTGRGLKE-IPRDIP-----LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ 84 (192)
T ss_dssp TEEECTTSCCSS-CCSCCC-----TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CEEEcCCCCcCc-CccCCC-----CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEE
Confidence 567777777643 443332 36777777777776433333344555577777777777766667777777777777
Q ss_pred ccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCcccC
Q 040379 292 LASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFT 352 (373)
Q Consensus 292 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~ 352 (373)
|++|++++..+..+..+++|++|++++|++++..|..+..++ +|++|++++|++.+..
T Consensus 85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~---~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN---SLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCT---TCCEEECTTCCBCCSG
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCC---CCCEEEeCCCCccCcC
Confidence 777777766666677777777777777777766665554443 6777777777776554
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.71 E-value=1.4e-18 Score=172.76 Aligned_cols=181 Identities=22% Similarity=0.139 Sum_probs=78.8
Q ss_pred CCCCEEeCCCCCCCCCCCccccCCCCCCCE-----EeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCC
Q 040379 109 HRLTYLDLSLNNFSGSPIPEFIGSLTKLSY-----LDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLS 183 (373)
Q Consensus 109 ~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~-----L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 183 (373)
+.++.|++.+|.+.. .+..+-....|.. ++++.|.+. ..|..+..++.|+.|+|++|.+. ..+..+..++
T Consensus 173 ~~~~~l~L~~n~~~~--~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~--~l~~~~~~l~ 247 (727)
T 4b8c_D 173 PLTPKIELFANGKDE--ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF--NISANIFKYD 247 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCS--CCCGGGGGCC
T ss_pred CccceEEeeCCCCCc--chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC--CCChhhcCCC
Confidence 456777887777664 2222222222222 222223333 34555666677777777777762 2333444666
Q ss_pred CCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccC
Q 040379 184 SLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNL 263 (373)
Q Consensus 184 ~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L 263 (373)
+|++|+|++|.++. ++..++.+++|++|++++|.++ .+|..++.+ ++|++|+|++|.++ .+|.. +..+++|
T Consensus 248 ~L~~L~Ls~N~l~~---lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l---~~L~~L~L~~N~l~-~lp~~-~~~l~~L 318 (727)
T 4b8c_D 248 FLTRLYLNGNSLTE---LPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC---FQLKYFYFFDNMVT-TLPWE-FGNLCNL 318 (727)
T ss_dssp SCSCCBCTTSCCSC---CCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG---TTCSEEECCSSCCC-CCCSS-TTSCTTC
T ss_pred CCCEEEeeCCcCcc---cChhhhCCCCCCEEeCcCCcCC-ccChhhcCC---CCCCEEECCCCCCC-ccChh-hhcCCCc
Confidence 66666666666663 3455666666666666666666 345556555 66666666666665 55554 2333446
Q ss_pred cEEEccCccccccccccccCCCC-CCEEEccCCcCcccccc
Q 040379 264 VLLGLDSNLLRGSIPVAFKHMVS-VSFLGLASNEFEGGVPD 303 (373)
Q Consensus 264 ~~L~l~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~ 303 (373)
+.|++++|.+++.+|..+..+.. +..+++++|.+++.+|.
T Consensus 319 ~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 319 QFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp CCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred cEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 66666666666555555433211 12245666666655543
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.71 E-value=4.2e-17 Score=132.60 Aligned_cols=106 Identities=24% Similarity=0.272 Sum_probs=50.8
Q ss_pred CcEEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEE
Q 040379 263 LVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELY 342 (373)
Q Consensus 263 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~ 342 (373)
|+.|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|++++|++++. | .+..+..+++|++|+
T Consensus 51 L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~l~~L~~L~ 126 (168)
T 2ell_A 51 LEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI-S-TLEPLKKLECLKSLD 126 (168)
T ss_dssp CCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSS-G-GGGGGSSCSCCCEEE
T ss_pred CCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcc-h-hHHHHhcCCCCCEEE
Confidence 44444444444432 3444555555555555555544444444455555555555555432 1 011222333555555
Q ss_pred CcCCcCcccCc---hhhhCCCCCCEEeCcCCCC
Q 040379 343 LENNRLNGFTN---NSIGQMSKLRTLSLNGNSL 372 (373)
Q Consensus 343 L~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l 372 (373)
+++|.+++..+ ..+..+++|++|++++|.+
T Consensus 127 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 127 LFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred eeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 55555554443 3445555555555555543
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.70 E-value=1.2e-16 Score=132.96 Aligned_cols=128 Identities=22% Similarity=0.229 Sum_probs=71.9
Q ss_pred cEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEEE
Q 040379 212 TTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLG 291 (373)
Q Consensus 212 ~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 291 (373)
+.++++++.++. +|..+. ++|++|++++|.++ .+|.. +..+++|+.|++++|.+++..+..|..+++|++|+
T Consensus 13 ~~l~~~~~~l~~-ip~~~~-----~~l~~L~L~~n~i~-~ip~~-~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ 84 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGIP-----RDVTELYLDGNQFT-LVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLI 84 (193)
T ss_dssp TEEECTTSCCSS-CCSCCC-----TTCCEEECCSSCCC-SCCGG-GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CEEEcCCCCCCc-CCCCCC-----CCCCEEECCCCcCc-hhHHH-hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEE
Confidence 456666666553 332221 45666666666665 45533 33334466666666666655555566666666666
Q ss_pred ccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCcc
Q 040379 292 LASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNG 350 (373)
Q Consensus 292 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~ 350 (373)
|++|.+++..+..|..+++|++|+|++|++++..+..+..++ +|+.|++++|++..
T Consensus 85 Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~---~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 85 LSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS---ALSHLAIGANPLYC 140 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT---TCCEEECCSSCEEC
T ss_pred CCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCc---cccEEEeCCCCeec
Confidence 666666655555566666666666666666643333333333 56666666666543
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=2.1e-16 Score=131.39 Aligned_cols=132 Identities=25% Similarity=0.239 Sum_probs=112.8
Q ss_pred CEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcc-cccCCCCCCccCEEECCCCcCCCCchhHHHhccccCc
Q 040379 186 TYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPL-SLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLV 264 (373)
Q Consensus 186 ~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~ 264 (373)
++++++++.+..++ ..+. +++++|++++|.+.+..+. .+..+ ++|++|++++|.+++..|.. +..+++|+
T Consensus 11 ~~l~~s~~~l~~ip---~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l---~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~ 81 (192)
T 1w8a_A 11 TTVDCTGRGLKEIP---RDIP--LHTTELLLNDNELGRISSDGLFGRL---PHLVKLELKRNQLTGIEPNA-FEGASHIQ 81 (192)
T ss_dssp TEEECTTSCCSSCC---SCCC--TTCSEEECCSCCCCSBCCSCSGGGC---TTCCEEECCSSCCCCBCTTT-TTTCTTCC
T ss_pred CEEEcCCCCcCcCc---cCCC--CCCCEEECCCCcCCccCCccccccC---CCCCEEECCCCCCCCcCHhH-cCCcccCC
Confidence 78999999987643 3332 3899999999999887664 47788 99999999999999655544 44556699
Q ss_pred EEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCc
Q 040379 265 LLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFP 326 (373)
Q Consensus 265 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p 326 (373)
.|++++|++++..+..+..+++|++|++++|++++..|..+..+++|++|++++|.+++..+
T Consensus 82 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99999999998888889999999999999999999889999999999999999999997654
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.68 E-value=8.6e-17 Score=128.05 Aligned_cols=128 Identities=20% Similarity=0.229 Sum_probs=85.7
Q ss_pred CccCEEECCCCcCC-CCchhHHHhccccCcEEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeE
Q 040379 236 TSLQFLELSENNLT-NSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTML 314 (373)
Q Consensus 236 ~~L~~L~ls~n~l~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 314 (373)
++|++|++++|.++ +.+|..+ ..+++|+.|++++|.+++. ..++.+++|++|++++|.+++.+|..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~-~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLT-DEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCC-TTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHH-hhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 44555555555554 3444322 2334466666666666543 456777888888888888887677777778888888
Q ss_pred eCcCCcCccc-CchhhhccCCCCccCEEECcCCcCcccCc---hhhhCCCCCCEEeCcC
Q 040379 315 NISDNKLRGH-FPELIQNLSRFSSLKELYLENNRLNGFTN---NSIGQMSKLRTLSLNG 369 (373)
Q Consensus 315 ~L~~n~l~~~-~p~~~~~l~~~~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~~ 369 (373)
++++|++++. .+..+.. +++|++|++++|.+++..+ ..+..+++|+.|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~---l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKK---LENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGG---CTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhh---CCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 8888888753 2233443 4488888888888887766 5677888888888764
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.68 E-value=3.6e-16 Score=128.21 Aligned_cols=133 Identities=22% Similarity=0.298 Sum_probs=86.9
Q ss_pred CcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEE
Q 040379 211 LTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFL 290 (373)
Q Consensus 211 L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 290 (373)
.+.+++++++++.. |..+ . ++|++|++++|.++ .++...+...++|++|++++|.+++..+..+..+++|++|
T Consensus 9 ~~~l~~~~~~l~~~-p~~~--~---~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 81 (177)
T 2o6r_A 9 GTEIRCNSKGLTSV-PTGI--P---SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTIL 81 (177)
T ss_dssp TTEEECCSSCCSSC-CTTC--C---TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCEEEecCCCCccC-CCCC--C---CCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEE
Confidence 46677777776643 3222 1 56777777777776 4555444555567777777777775555556777777777
Q ss_pred EccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCcccCc
Q 040379 291 GLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTN 353 (373)
Q Consensus 291 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~ 353 (373)
++++|.+++..+..+..+++|++|++++|++++..+..+..+ ++|++|++++|++.+..+
T Consensus 82 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l---~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 82 YLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRL---TSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC---TTCCEEECCSSCBCCCHH
T ss_pred ECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCC---cccCEEEecCCCeeccCc
Confidence 777777776666666777777777777777774433333333 377777777777766544
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=3.2e-16 Score=127.41 Aligned_cols=137 Identities=15% Similarity=0.126 Sum_probs=65.6
Q ss_pred CCCcEEEccCCCCC-CCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCC
Q 040379 209 PLLTTLYLYRCHLP-PIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSV 287 (373)
Q Consensus 209 ~~L~~L~l~~n~l~-~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L 287 (373)
++|++|++++|.++ +.+|..+..+ ++|++|++++|.+++. ..+..+++|+.|++++|.+++.+|..+..+++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l---~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEF---VNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGG---GGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhC---CCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 34444444444443 3333333333 4455555555444422 112223335555555555554444444555666
Q ss_pred CEEEccCCcCcccc-cccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCccc
Q 040379 288 SFLGLASNEFEGGV-PDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGF 351 (373)
Q Consensus 288 ~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~ 351 (373)
++|++++|.+++.. +..+..+++|++|++++|++++..+.....+..+++|++|++++|.+...
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 66666666665421 24555666666666666666643331111122333666666666665443
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.65 E-value=3.6e-16 Score=124.39 Aligned_cols=127 Identities=17% Similarity=0.134 Sum_probs=66.3
Q ss_pred CCCcEEEccCCCCC-CCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCC
Q 040379 209 PLLTTLYLYRCHLP-PIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSV 287 (373)
Q Consensus 209 ~~L~~L~l~~n~l~-~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L 287 (373)
+++++|++++|.++ +.+|..+..+ ++|++|++++|.+++. ..+..+++|+.|++++|.+++.+|..+..+++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l---~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEF---EELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTC---TTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhc---CCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence 44455555555444 3344444444 5555555555555432 112233345555555555554455555556666
Q ss_pred CEEEccCCcCccc-ccccccCCCCCCeEeCcCCcCcccCc---hhhhccCCCCccCEEECc
Q 040379 288 SFLGLASNEFEGG-VPDFFGNMCSLTMLNISDNKLRGHFP---ELIQNLSRFSSLKELYLE 344 (373)
Q Consensus 288 ~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~p---~~~~~l~~~~~L~~L~L~ 344 (373)
++|++++|.+++. .+..+..+++|++|++++|++++..+ ..+..++ +|+.|+++
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~---~L~~L~l~ 148 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLP---QLTYLDGY 148 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCT---TCCEETTB
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCC---CcccccCC
Confidence 6666666666542 23556666666666666666665433 2344433 66666654
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=1.3e-15 Score=137.58 Aligned_cols=245 Identities=11% Similarity=0.075 Sum_probs=156.9
Q ss_pred CCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCC--------CCCCCEEEccCCCCCCCCCCccc
Q 040379 108 LHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGN--------LSALQHLDLSLNHLFSAGNLDWL 179 (373)
Q Consensus 108 l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~--------l~~L~~L~L~~n~~~~~~~~~~~ 179 (373)
+++|++|+|++|.+... ...-+.++.++.+.+..+.+. +..|.+ +++|+.+++.+ .+.. .....|
T Consensus 48 l~~L~~LdLs~n~i~~~--~~~~~~~~~~~~~~~~~~~I~---~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~-I~~~aF 120 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMY--SGKAGTYPNGKFYIYMANFVP---AYAFSNVVNGVTKGKQTLEKVILSE-KIKN-IEDAAF 120 (329)
T ss_dssp CTTCCEEEEEEEEECCE--EESSSSSGGGCCEEECTTEEC---TTTTEEEETTEEEECTTCCC-CBCT-TCCE-ECTTTT
T ss_pred hccCeEEecCcceeEEe--cCccccccccccccccccccC---HHHhcccccccccccCCCcEEECCc-cccc-hhHHHh
Confidence 66777777777766511 111112222344444444222 234455 88888888887 6632 233467
Q ss_pred CCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCC----CCCCCcccccCCC----------------------
Q 040379 180 SHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCH----LPPIVPLSLSNLN---------------------- 233 (373)
Q Consensus 180 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~~~~~~l~---------------------- 233 (373)
..|++|+++++++|.+..+.. ..+..+.++..+...... ........+..+.
T Consensus 121 ~~~~~L~~l~l~~n~i~~i~~--~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~ 198 (329)
T 3sb4_A 121 KGCDNLKICQIRKKTAPNLLP--EALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAG 198 (329)
T ss_dssp TTCTTCCEEEBCCSSCCEECT--TSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTT
T ss_pred hcCcccceEEcCCCCccccch--hhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcc
Confidence 888888888888887765433 566666666666654421 1111122222220
Q ss_pred -CCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCC
Q 040379 234 -YSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLT 312 (373)
Q Consensus 234 -~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 312 (373)
...++..+.+.++ +.......+...+++|+.+++++|.++...+..|.++++|+.+++.+| ++.....+|.++++|+
T Consensus 199 ~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~ 276 (329)
T 3sb4_A 199 LQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLA 276 (329)
T ss_dssp CCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred cCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhcc
Confidence 0123333333332 111111223334677999999999998666778999999999999998 7767778899999999
Q ss_pred -eEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCcccCchhhhCCCCCCEEeC
Q 040379 313 -MLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSL 367 (373)
Q Consensus 313 -~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 367 (373)
.+++.+ .++...+..+. .|++|+.+++++|.++...+..|.++++|+.++.
T Consensus 277 ~~l~l~~-~l~~I~~~aF~---~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 277 GTLELPA-SVTAIEFGAFM---GCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEEECT-TCCEECTTTTT---TCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEEEEcc-cceEEchhhhh---CCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 999998 67644444544 5559999999999999999999999999999864
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.63 E-value=1e-15 Score=125.36 Aligned_cols=130 Identities=17% Similarity=0.153 Sum_probs=69.5
Q ss_pred CccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEe
Q 040379 236 TSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLN 315 (373)
Q Consensus 236 ~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 315 (373)
++|++|++++|.++ .++ .+....++|+.|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 19 ~~L~~L~l~~n~l~-~i~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 19 VRDRELDLRGYKIP-VIE-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TSCEEEECTTSCCC-SCC-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CCceEEEeeCCCCc-hhH-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 45555555555554 232 2333333466666666655543 3455666666666666666644334445666666666
Q ss_pred CcCCcCcccCchhhhccCCCCccCEEECcCCcCcccCch---hhhCCCCCCEEeCcCCC
Q 040379 316 ISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNN---SIGQMSKLRTLSLNGNS 371 (373)
Q Consensus 316 L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~l~~n~ 371 (373)
+++|+++ .+|. +..+..+++|+.|++++|+++...+. .+..+++|+.||+++|.
T Consensus 95 L~~N~i~-~~~~-~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 95 LTNNSLV-ELGD-LDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCSCCCC-CGGG-GGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCCcCC-cchh-hHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 6666664 3333 11222333666666666666544332 35566666666666654
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=6.1e-15 Score=120.83 Aligned_cols=114 Identities=24% Similarity=0.276 Sum_probs=82.7
Q ss_pred CCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCC
Q 040379 209 PLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVS 288 (373)
Q Consensus 209 ~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 288 (373)
++|++|++++|.+++..+..+..+ ++|++|++++|.++ .+++..+..+++|+.|++++|.+++..+..+..+++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 103 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKL---TQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLK 103 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTC---TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCc---ccccEEECCCCcce-EeChhHccCCCccCEEECCCCCccccCHHHhhCCcccC
Confidence 456666666666665555555555 77777777777776 45555445555678888888887766666678888899
Q ss_pred EEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCc
Q 040379 289 FLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFP 326 (373)
Q Consensus 289 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p 326 (373)
+|++++|.+++..+..+..+++|++|++++|.+.+..|
T Consensus 104 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 104 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred EEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99999998886666667888899999999998887654
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.59 E-value=2.9e-14 Score=118.45 Aligned_cols=128 Identities=23% Similarity=0.242 Sum_probs=72.7
Q ss_pred EEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCCEEEccC
Q 040379 113 YLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGS 192 (373)
Q Consensus 113 ~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~ 192 (373)
+++++++.++ .+|..+. ++|++|++++|.++ .+|..+..+++|++|++++|.+.. .....+..+++|++|++++
T Consensus 14 ~l~~~~~~l~--~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~-i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 14 VVRCSNKGLK--VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIST-LSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp EEECTTSCCS--SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCS
T ss_pred EEEcCCCCCC--cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCE-eCHhHccCCCCCCEEECCC
Confidence 4555555554 2343332 35555566555555 455555555566666666665522 2223455555666666666
Q ss_pred ccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCC
Q 040379 193 NNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNS 251 (373)
Q Consensus 193 n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~ 251 (373)
|.+...+ +..+..+++|++|++++|.++...+..+..+ ++|+.|++++|.+...
T Consensus 88 N~l~~i~--~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l---~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 88 NRLRCIP--PRTFDGLKSLRLLSLHGNDISVVPEGAFNDL---SALSHLAIGANPLYCD 141 (193)
T ss_dssp SCCCBCC--TTTTTTCTTCCEEECCSSCCCBCCTTTTTTC---TTCCEEECCSSCEECS
T ss_pred CccCEeC--HHHhCCCCCCCEEECCCCCCCeeChhhhhcC---ccccEEEeCCCCeecC
Confidence 6555532 2456666667777777776666555556666 7778888888776643
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.58 E-value=1.6e-15 Score=137.12 Aligned_cols=241 Identities=15% Similarity=0.069 Sum_probs=161.3
Q ss_pred CcEEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCCccccCC--------CCCCCEEeCcCCccccCcc
Q 040379 80 GHVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGS--------LTKLSYLDLSFAEFEGPIP 151 (373)
Q Consensus 80 ~~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~--------l~~L~~L~L~~n~l~~~~p 151 (373)
.+++.||++++.+... ...+. .++.++.+.+..+.+.. ..|.+ +++|+.+++.. .++..-+
T Consensus 49 ~~L~~LdLs~n~i~~~---~~~~~---~~~~~~~~~~~~~~I~~----~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~ 117 (329)
T 3sb4_A 49 PSLKVLDISNAEIKMY---SGKAG---TYPNGKFYIYMANFVPA----YAFSNVVNGVTKGKQTLEKVILSE-KIKNIED 117 (329)
T ss_dssp TTCCEEEEEEEEECCE---EESSS---SSGGGCCEEECTTEECT----TTTEEEETTEEEECTTCCC-CBCT-TCCEECT
T ss_pred ccCeEEecCcceeEEe---cCccc---cccccccccccccccCH----HHhcccccccccccCCCcEEECCc-cccchhH
Confidence 4688888888633310 11111 12224555555554432 34556 99999999998 7875556
Q ss_pred cccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCCEEEccCccC----CCCcchhhhhCCCCCCc---------------
Q 040379 152 SHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNL----SRSTDWLQVVGNLPLLT--------------- 212 (373)
Q Consensus 152 ~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~----~~~~~~~~~~~~l~~L~--------------- 212 (373)
..|.+|++|+.+++++|.+... ....|..+.++.++....+.. .... ...+..+..|+
T Consensus 118 ~aF~~~~~L~~l~l~~n~i~~i-~~~aF~~~~~l~~l~~~~~~~~~~~~~i~--~~~f~~~~~L~~~i~~~~~~~l~~~~ 194 (329)
T 3sb4_A 118 AAFKGCDNLKICQIRKKTAPNL-LPEALADSVTAIFIPLGSSDAYRFKNRWE--HFAFIEGEPLETTIQVGAMGKLEDEI 194 (329)
T ss_dssp TTTTTCTTCCEEEBCCSSCCEE-CTTSSCTTTCEEEECTTCTHHHHTSTTTT--TSCEEESCCCEEEEEECTTCCHHHHH
T ss_pred HHhhcCcccceEEcCCCCcccc-chhhhcCCCceEEecCcchhhhhcccccc--ccccccccccceeEEecCCCcHHHHH
Confidence 6789999999999999998433 335677788888877665321 1110 02233333343
Q ss_pred -----------EEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccc
Q 040379 213 -----------TLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAF 281 (373)
Q Consensus 213 -----------~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 281 (373)
.+.+.++-.. .....+.. .+++|+.+++++|.++ .++...|..+.+|+.+++.+| ++...+.+|
T Consensus 195 ~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~--~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF 269 (329)
T 3sb4_A 195 MKAGLQPRDINFLTIEGKLDN-ADFKLIRD--YMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVF 269 (329)
T ss_dssp HHTTCCGGGCSEEEEEECCCH-HHHHHHHH--HCTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTT
T ss_pred hhcccCccccceEEEeeeecH-HHHHHHHH--hcCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHh
Confidence 3333222100 00000100 1389999999999988 888988998888999999998 776667789
Q ss_pred cCCCCCC-EEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEEC
Q 040379 282 KHMVSVS-FLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYL 343 (373)
Q Consensus 282 ~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L 343 (373)
.++++|+ .+++.+ .++...+.+|.++++|+.+++++|+++...+..+. .|++|+.++.
T Consensus 270 ~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~---~~~~L~~ly~ 328 (329)
T 3sb4_A 270 SNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFG---NGVPSKLIYK 328 (329)
T ss_dssp TTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTC---TTCCCCEEEC
T ss_pred hCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhc---CCcchhhhcc
Confidence 9999999 999998 77767778999999999999999999855555554 4558988864
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.58 E-value=1.8e-17 Score=138.69 Aligned_cols=111 Identities=20% Similarity=0.236 Sum_probs=49.7
Q ss_pred hhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccC
Q 040379 204 VVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKH 283 (373)
Q Consensus 204 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 283 (373)
.+..+++|++|++++|.+.+ +| .+..+ ++|++|++++|.++ .+|..+. .+++|+.|++++|++++ +| .+..
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l---~~L~~L~l~~n~l~-~l~~~~~-~~~~L~~L~L~~N~l~~-l~-~~~~ 113 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGM---ENLRILSLGRNLIK-KIENLDA-VADTLEELWISYNQIAS-LS-GIEK 113 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHH---TTCCEEEEEEEEEC-SCSSHHH-HHHHCSEEEEEEEECCC-HH-HHHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccC---CCCCEEECCCCCcc-cccchhh-cCCcCCEEECcCCcCCc-CC-cccc
Confidence 44455555555555555544 23 33333 45555555555544 3333222 22235555555555443 22 3444
Q ss_pred CCCCCEEEccCCcCccccc-ccccCCCCCCeEeCcCCcCcc
Q 040379 284 MVSVSFLGLASNEFEGGVP-DFFGNMCSLTMLNISDNKLRG 323 (373)
Q Consensus 284 l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~ 323 (373)
+++|+.|++++|.+++..+ ..+..+++|++|++++|.+++
T Consensus 114 l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 4445555555554443111 234444455555555554443
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=8e-15 Score=120.02 Aligned_cols=105 Identities=17% Similarity=0.185 Sum_probs=53.0
Q ss_pred CCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccc--cccCCCCC
Q 040379 210 LLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPV--AFKHMVSV 287 (373)
Q Consensus 210 ~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~l~~l~~L 287 (373)
+|++|++++|.+++. ..+..+ ++|++|++++|.++ .+|+.++..+++|+.|++++|.++ .+|. .+..+++|
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l---~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L 115 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLL---RRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSL 115 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCC---SSCCEEECCSSCCC-EECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTC
T ss_pred CCCEEECCCCCCCcc--cccccC---CCCCEEECCCCccc-ccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCC
Confidence 445555555544432 233333 56666666666655 344444333444555555555553 3333 45555566
Q ss_pred CEEEccCCcCcccccc----cccCCCCCCeEeCcCCcCc
Q 040379 288 SFLGLASNEFEGGVPD----FFGNMCSLTMLNISDNKLR 322 (373)
Q Consensus 288 ~~L~L~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l~ 322 (373)
+.|++++|.++. .|. .+..+++|++|++++|.+.
T Consensus 116 ~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 116 TYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 666666665552 333 2455555555555555543
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.55 E-value=2.8e-14 Score=116.02 Aligned_cols=110 Identities=24% Similarity=0.285 Sum_probs=89.5
Q ss_pred ccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeC
Q 040379 237 SLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNI 316 (373)
Q Consensus 237 ~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 316 (373)
..+.+++++|.++ .+|..+ .++++.|++++|.+++..|..+..+++|++|+|++|++++..+..|..+++|++|+|
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 4678999999988 577654 356899999999999877888889999999999999999777777888999999999
Q ss_pred cCCcCcccCchhhhccCCCCccCEEECcCCcCcccCc
Q 040379 317 SDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTN 353 (373)
Q Consensus 317 ~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~ 353 (373)
++|++++..+..+..++ +|++|+|++|+++...+
T Consensus 86 ~~N~l~~~~~~~~~~l~---~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLK---SLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CSSCCCCCCTTTTTTCT---TCCEEECCSSCBCTTBG
T ss_pred CCCccCEeCHHHhcCCC---CCCEEEeCCCCCCCCch
Confidence 99999865555555554 89999999998876643
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.52 E-value=5.8e-14 Score=114.56 Aligned_cols=108 Identities=25% Similarity=0.308 Sum_probs=86.7
Q ss_pred cCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCc
Q 040379 238 LQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNIS 317 (373)
Q Consensus 238 L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 317 (373)
-+.+++++|.+. .+|..+. ++|+.|++++|++++..|..+..+++|++|+|++|++++..+..+..+++|++|+|+
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 468899999886 6776543 568999999999988778888899999999999999987666667888999999999
Q ss_pred CCcCcccCchhhhccCCCCccCEEECcCCcCcccC
Q 040379 318 DNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFT 352 (373)
Q Consensus 318 ~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~ 352 (373)
+|++++..+..+..++ +|++|++++|++....
T Consensus 90 ~N~l~~l~~~~~~~l~---~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLK---SLTHIYLYNNPWDCEC 121 (174)
T ss_dssp SSCCCCCCTTTTTTCT---TCSEEECCSSCBCTTB
T ss_pred CCccceeCHHHhcccc---CCCEEEeCCCCccccc
Confidence 9999855444454444 8999999999887654
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.51 E-value=4.1e-15 Score=136.26 Aligned_cols=188 Identities=21% Similarity=0.192 Sum_probs=128.6
Q ss_pred CCCCCEEEccCccCCCC--cchhhhhCC-CCCCcEEEccCCCCCCCCccccc-CCCCCCccCEEECCCCcCCCCchhHHH
Q 040379 182 LSSLTYLDLGSNNLSRS--TDWLQVVGN-LPLLTTLYLYRCHLPPIVPLSLS-NLNYSTSLQFLELSENNLTNSIYPWLF 257 (373)
Q Consensus 182 l~~L~~L~l~~n~~~~~--~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~-~l~~~~~L~~L~ls~n~l~~~~~~~~~ 257 (373)
.+.|++|++++|.++.. ..+...+.. .++|++|++++|.++......+. .+ ++|++|++++|.+++.....+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L---~~L~~L~Ls~n~l~~~~~~~L~ 147 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVF---LRARKLGLQLNSLGPEACKDLR 147 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHH---HTEEEEECCSSCCCHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHH---HhccHhhcCCCCCCHHHHHHHH
Confidence 46799999999998753 123333443 36899999999988654333332 34 6789999999999855444443
Q ss_pred h----ccccCcEEEccCccccc----cccccccCCCCCCEEEccCCcCcccc----cccccCCCCCCeEeCcCCcCcccC
Q 040379 258 N----ASSNLVLLGLDSNLLRG----SIPVAFKHMVSVSFLGLASNEFEGGV----PDFFGNMCSLTMLNISDNKLRGHF 325 (373)
Q Consensus 258 ~----~~~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~~ 325 (373)
. ..++|+.|++++|.+++ .++..+...++|++|+|++|.+++.. +..+...++|++|+|++|.+++..
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence 3 23569999999999875 34555677889999999999987533 556677889999999999998643
Q ss_pred chhhh-ccCCCCccCEEECcCCcCcccCchhhhCCC--C---CCEEe--CcCCCC
Q 040379 326 PELIQ-NLSRFSSLKELYLENNRLNGFTNNSIGQMS--K---LRTLS--LNGNSL 372 (373)
Q Consensus 326 p~~~~-~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~--~---L~~L~--l~~n~l 372 (373)
...+. .+..+++|++|+|++|.+++.....+..+. . |+.+. +..|.+
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~ 282 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV 282 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----C
T ss_pred HHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCcc
Confidence 33222 233445899999999999877665554431 1 66666 555543
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.50 E-value=9.9e-13 Score=121.60 Aligned_cols=244 Identities=11% Similarity=0.062 Sum_probs=138.7
Q ss_pred cccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCC
Q 040379 104 ALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLS 183 (373)
Q Consensus 104 ~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 183 (373)
+|.+. +|+.+.+..+ ++.. -...|.++ +|+.+.+.. .+...-+..|.+|++|+.+++..|.+...+. ..|. +.
T Consensus 131 aF~~~-~L~~i~l~~~-i~~I-~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~-~aF~-~~ 203 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG-LKSI-GDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPA-STFV-YA 203 (401)
T ss_dssp TTTTC-CCSEEECCTT-CCEE-CTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECT-TTTT-TC
T ss_pred hcccC-CccEEEeCCC-ccEE-CHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEech-hhEe-ec
Confidence 44443 5777776654 4332 23334443 577777764 4443334566677777777777766633221 2233 46
Q ss_pred CCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccC
Q 040379 184 SLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNL 263 (373)
Q Consensus 184 ~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L 263 (373)
+|+.+.+..+ +..+.. ..+..+++|+.+.+..+ ++.....+|.. .+|+.+.+. +.++ .++...|..+.+|
T Consensus 204 ~L~~l~lp~~-l~~I~~--~aF~~~~~L~~l~l~~~-l~~I~~~aF~~----~~L~~i~lp-~~i~-~I~~~aF~~c~~L 273 (401)
T 4fdw_A 204 GIEEVLLPVT-LKEIGS--QAFLKTSQLKTIEIPEN-VSTIGQEAFRE----SGITTVKLP-NGVT-NIASRAFYYCPEL 273 (401)
T ss_dssp CCSEEECCTT-CCEECT--TTTTTCTTCCCEECCTT-CCEECTTTTTT----CCCSEEEEE-TTCC-EECTTTTTTCTTC
T ss_pred ccCEEEeCCc-hheehh--hHhhCCCCCCEEecCCC-ccCcccccccc----CCccEEEeC-CCcc-EEChhHhhCCCCC
Confidence 7777777643 333322 55666777777777653 33333334433 466777763 3343 4555566666667
Q ss_pred cEEEccCcccc-----ccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCcc
Q 040379 264 VLLGLDSNLLR-----GSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSL 338 (373)
Q Consensus 264 ~~L~l~~n~l~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L 338 (373)
+.+.+.++.+. ...+..|.++++|+.+++.+ .++.....+|.++++|+.+++..+ ++..-+. .+..| +|
T Consensus 274 ~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~---aF~~~-~L 347 (401)
T 4fdw_A 274 AEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFS---AFNNT-GI 347 (401)
T ss_dssp CEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTT---SSSSS-CC
T ss_pred CEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHH---hCCCC-CC
Confidence 77777666553 23445666777777777773 355455566777777777777544 4422222 23444 67
Q ss_pred CEEECcCCcCcccCchhhhCCC-CCCEEeCcCC
Q 040379 339 KELYLENNRLNGFTNNSIGQMS-KLRTLSLNGN 370 (373)
Q Consensus 339 ~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n 370 (373)
+.+++.+|.+.......+.+++ +++.|.+..+
T Consensus 348 ~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 348 KEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp CEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred CEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 7777777766665555566663 5666666544
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=9.8e-14 Score=112.79 Aligned_cols=109 Identities=27% Similarity=0.290 Sum_probs=90.3
Q ss_pred CCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCE
Q 040379 210 LLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSF 289 (373)
Q Consensus 210 ~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 289 (373)
..+.+++++|.++. +|..+. ++|++|++++|.+++ +++..+..+++|+.|++++|++++..+..+..+++|++
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~~-----~~l~~L~L~~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~ 82 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGIP-----TTTQVLYLYDNQITK-LEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQ 82 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCCC-----TTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCEEEeCCCCcCc-cCccCC-----CCCcEEEcCCCcCCc-cChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCE
Confidence 35789999999886 454432 789999999999995 44444555666999999999999777777899999999
Q ss_pred EEccCCcCcccccccccCCCCCCeEeCcCCcCcccC
Q 040379 290 LGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHF 325 (373)
Q Consensus 290 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 325 (373)
|+|++|++++..+..+..+++|++|+|++|.++...
T Consensus 83 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 83 LSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred EECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 999999999877778999999999999999998654
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.48 E-value=2.4e-16 Score=131.77 Aligned_cols=82 Identities=17% Similarity=0.135 Sum_probs=39.7
Q ss_pred CccCEEECCCCcCCCCchhHHHhccccCcEEEccCcccccccc-ccccCCCCCCEEEccCCcCcccccc----------c
Q 040379 236 TSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIP-VAFKHMVSVSFLGLASNEFEGGVPD----------F 304 (373)
Q Consensus 236 ~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~----------~ 304 (373)
++|++|++++|.+++ +| .+ ..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+++..|. .
T Consensus 93 ~~L~~L~L~~N~l~~-l~-~~-~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~ 169 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-GI-EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV 169 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-HH-HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHH
T ss_pred CcCCEEECcCCcCCc-CC-cc-ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHH
Confidence 344444444444442 22 22 222335555555555543211 2455556666666666666544333 2
Q ss_pred ccCCCCCCeEeCcCCcCc
Q 040379 305 FGNMCSLTMLNISDNKLR 322 (373)
Q Consensus 305 l~~l~~L~~L~L~~n~l~ 322 (373)
+..+++|++|| ++.++
T Consensus 170 ~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 170 VKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHCSSCSEEC--CGGGT
T ss_pred HHhCCCcEEEC--CcccC
Confidence 55666777665 44444
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.47 E-value=5.1e-15 Score=135.66 Aligned_cols=194 Identities=19% Similarity=0.165 Sum_probs=131.9
Q ss_pred CCCCCEEEccCCCCCCCCCC---cccC-CCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCC
Q 040379 157 LSALQHLDLSLNHLFSAGNL---DWLS-HLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNL 232 (373)
Q Consensus 157 l~~L~~L~L~~n~~~~~~~~---~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 232 (373)
++.|++|++++|.+...... ..+. ..++|++|++++|.+... ........+++|++|++++|.++......+...
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~-~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPA-GLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHH-HHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHH-HHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 46799999999998332111 1122 347999999999998652 122233345689999999999876544444211
Q ss_pred --CCCCccCEEECCCCcCCCCchhHHH---hccccCcEEEccCcccccc----ccccccCCCCCCEEEccCCcCccc---
Q 040379 233 --NYSTSLQFLELSENNLTNSIYPWLF---NASSNLVLLGLDSNLLRGS----IPVAFKHMVSVSFLGLASNEFEGG--- 300 (373)
Q Consensus 233 --~~~~~L~~L~ls~n~l~~~~~~~~~---~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~--- 300 (373)
...++|++|++++|.+++.....+. ...++|++|++++|.+++. ++..+...++|+.|+|++|.+++.
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 1227899999999998753322222 3345699999999998753 356677888999999999999864
Q ss_pred -ccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCc--cCEEE--CcCCcCccc
Q 040379 301 -VPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSS--LKELY--LENNRLNGF 351 (373)
Q Consensus 301 -~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~--L~~L~--L~~n~l~~~ 351 (373)
++..+...++|++|+|++|.|++.....+..+..... |+.+. +..+.++..
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence 3444556799999999999999766666665543332 77777 777777554
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.46 E-value=3.5e-12 Score=117.89 Aligned_cols=242 Identities=14% Similarity=0.109 Sum_probs=179.6
Q ss_pred CCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCCCCC
Q 040379 107 QLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLT 186 (373)
Q Consensus 107 ~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 186 (373)
.+..++.+.+..+ ++.. -...|.++ +|+.+.+..+ +...-..+|.++ +|+.+.+.. .+. ......|..|++|+
T Consensus 111 ~~~~l~~i~ip~~-i~~I-~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VKSI-PKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLK 183 (401)
T ss_dssp ECSSCSEEECCTT-CCEE-CTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCC
T ss_pred ecCCccEEEECCc-cCEe-hHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCC
Confidence 3577888888654 4432 34456664 7999999776 653444566664 799999986 442 22334689999999
Q ss_pred EEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEE
Q 040379 187 YLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLL 266 (373)
Q Consensus 187 ~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L 266 (373)
.+++.+|.+..++. ..+. ..+|+.+.+..+ +......+|..+ ++|+.+++..+ ++ .+....|.. .+|+.+
T Consensus 184 ~l~l~~n~l~~I~~--~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~---~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i 253 (401)
T 4fdw_A 184 KADLSKTKITKLPA--STFV-YAGIEEVLLPVT-LKEIGSQAFLKT---SQLKTIEIPEN-VS-TIGQEAFRE-SGITTV 253 (401)
T ss_dssp EEECTTSCCSEECT--TTTT-TCCCSEEECCTT-CCEECTTTTTTC---TTCCCEECCTT-CC-EECTTTTTT-CCCSEE
T ss_pred eeecCCCcceEech--hhEe-ecccCEEEeCCc-hheehhhHhhCC---CCCCEEecCCC-cc-Ccccccccc-CCccEE
Confidence 99999998876533 3343 689999999854 666566677776 89999999875 44 566666666 459999
Q ss_pred EccCccccccccccccCCCCCCEEEccCCcCc-----ccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEE
Q 040379 267 GLDSNLLRGSIPVAFKHMVSVSFLGLASNEFE-----GGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKEL 341 (373)
Q Consensus 267 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L 341 (373)
.+. +.++......|.++++|+.+++.+|.+. ......|.++++|+.+++.+ .++..-...+ ..|++|+.+
T Consensus 254 ~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF---~~c~~L~~l 328 (401)
T 4fdw_A 254 KLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLL---GGNRKVTQL 328 (401)
T ss_dssp EEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTT---TTCCSCCEE
T ss_pred EeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhh---cCCCCccEE
Confidence 995 4466556778999999999999998775 35567899999999999994 4663333344 455699999
Q ss_pred ECcCCcCcccCchhhhCCCCCCEEeCcCCCC
Q 040379 342 YLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 372 (373)
Q Consensus 342 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 372 (373)
.+..+ ++......|.++ +|+.+++.+|.+
T Consensus 329 ~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 329 TIPAN-VTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp EECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred EECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 99655 777778889999 999999999865
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.46 E-value=2.3e-13 Score=110.94 Aligned_cols=107 Identities=26% Similarity=0.293 Sum_probs=88.2
Q ss_pred CcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEE
Q 040379 211 LTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFL 290 (373)
Q Consensus 211 L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 290 (373)
-+.++++++.+.. +|..+. ++|++|++++|.+++ +++..+..+++|+.|++++|++++..+..+..+++|++|
T Consensus 14 ~~~l~~~~n~l~~-iP~~~~-----~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L 86 (174)
T 2r9u_A 14 QTLVNCQNIRLAS-VPAGIP-----TDKQRLWLNNNQITK-LEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQL 86 (174)
T ss_dssp SSEEECCSSCCSS-CCSCCC-----TTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CcEEEeCCCCCCc-cCCCcC-----CCCcEEEeCCCCccc-cCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEE
Confidence 4789999999865 555442 789999999999985 444445556669999999999997666667899999999
Q ss_pred EccCCcCcccccccccCCCCCCeEeCcCCcCccc
Q 040379 291 GLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGH 324 (373)
Q Consensus 291 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 324 (373)
+|++|++++..+..+..+++|++|++++|.+...
T Consensus 87 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 87 DLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 9999999976666799999999999999999854
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.35 E-value=3.6e-12 Score=115.82 Aligned_cols=106 Identities=25% Similarity=0.216 Sum_probs=80.0
Q ss_pred CEEECCCC-cCCCCchhHHHhccccCcEEEccC-ccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeC
Q 040379 239 QFLELSEN-NLTNSIYPWLFNASSNLVLLGLDS-NLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNI 316 (373)
Q Consensus 239 ~~L~ls~n-~l~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 316 (373)
..++.+++ .++ .+|. +....+|+.|+|++ |.+++..+..|..+++|+.|+|++|++++..|..|.++++|++|+|
T Consensus 11 ~~v~~~~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCT-TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCC-ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 35688877 777 5776 44455588888885 8888777777888888888888888888877888888888888888
Q ss_pred cCCcCcccCchhhhccCCCCccCEEECcCCcCccc
Q 040379 317 SDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGF 351 (373)
Q Consensus 317 ~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~ 351 (373)
++|+|++..+..+..+ .|+.|+|.+|++...
T Consensus 88 ~~N~l~~~~~~~~~~~----~L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 88 SFNALESLSWKTVQGL----SLQELVLSGNPLHCS 118 (347)
T ss_dssp CSSCCSCCCSTTTCSC----CCCEEECCSSCCCCC
T ss_pred CCCccceeCHHHcccC----CceEEEeeCCCccCC
Confidence 8888885444443322 388888888888654
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.20 E-value=4.7e-11 Score=108.43 Aligned_cols=106 Identities=23% Similarity=0.147 Sum_probs=89.5
Q ss_pred cEEEccCC-CCCCCCcccccCCCCCCccCEEECCC-CcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCE
Q 040379 212 TTLYLYRC-HLPPIVPLSLSNLNYSTSLQFLELSE-NNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSF 289 (373)
Q Consensus 212 ~~L~l~~n-~l~~~~~~~~~~l~~~~~L~~L~ls~-n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 289 (373)
..++++++ +++. +|. +..+ ++|++|+|++ |.+. .+++..+..+++|+.|+|++|++++..|..|.++++|+.
T Consensus 11 ~~v~~~~~n~l~~-ip~-l~~~---~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 84 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-LPGA---ENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84 (347)
T ss_dssp SCEECCSSCCCTT-TTT-SCSC---SCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred CEEEcCCCCCCCc-cCC-CCCC---CCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCE
Confidence 35688887 7876 666 7777 8999999996 9998 566666666777999999999999988889999999999
Q ss_pred EEccCCcCcccccccccCCCCCCeEeCcCCcCccc
Q 040379 290 LGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGH 324 (373)
Q Consensus 290 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 324 (373)
|+|++|++++..+..+..++ |+.|+|.+|.+...
T Consensus 85 L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 85 LNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp EECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred EeCCCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 99999999976666676665 99999999999853
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.14 E-value=8.3e-11 Score=106.87 Aligned_cols=207 Identities=16% Similarity=0.211 Sum_probs=129.8
Q ss_pred CCCCCEEEccCCCCCCCCC-------CcccCCCCCCCEEEccCccCCC-------CcchhhhhCCCCCCcEEEccCCCCC
Q 040379 157 LSALQHLDLSLNHLFSAGN-------LDWLSHLSSLTYLDLGSNNLSR-------STDWLQVVGNLPLLTTLYLYRCHLP 222 (373)
Q Consensus 157 l~~L~~L~L~~n~~~~~~~-------~~~~~~l~~L~~L~l~~n~~~~-------~~~~~~~~~~l~~L~~L~l~~n~l~ 222 (373)
..+++.|.+.......... .....++++|+.|.+....... ...+...+..+|+|+.|++++|.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 3467788877655411111 1124567899999987654321 1135566778899999999887311
Q ss_pred CCCcccccCCCCCCccCEEECCCCcCCCCchhHHHh-ccccCcEEEccC--cccccc-----ccccc--cCCCCCCEEEc
Q 040379 223 PIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFN-ASSNLVLLGLDS--NLLRGS-----IPVAF--KHMVSVSFLGL 292 (373)
Q Consensus 223 ~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~-~~~~L~~L~l~~--n~l~~~-----~~~~l--~~l~~L~~L~L 292 (373)
..+. +. . ++|++|++..+.+.......+.. .+++|+.|+|+. +...+. +...+ ..+++|+.|++
T Consensus 186 -~l~~-~~-~---~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L 259 (362)
T 2ra8_A 186 -SIGK-KP-R---PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGI 259 (362)
T ss_dssp -BCCS-CB-C---TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEE
T ss_pred -eecc-cc-C---CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeC
Confidence 1222 22 3 89999999988887544444442 456799999863 221111 11222 35789999999
Q ss_pred cCCcCcccccccc---cCCCCCCeEeCcCCcCcccCchhhh-ccCCCCccCEEECcCCcCcccCchhhhC-CCCCCEEeC
Q 040379 293 ASNEFEGGVPDFF---GNMCSLTMLNISDNKLRGHFPELIQ-NLSRFSSLKELYLENNRLNGFTNNSIGQ-MSKLRTLSL 367 (373)
Q Consensus 293 ~~n~l~~~~~~~l---~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~~~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l 367 (373)
.+|.+.+..+..+ ..+++|++|+|+.|.+++..+..+. .+..+++|+.|++++|.++......+.. + ...+++
T Consensus 260 ~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~ 337 (362)
T 2ra8_A 260 VDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDV 337 (362)
T ss_dssp ESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEEC
T ss_pred CCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEe
Confidence 9998875443333 2578899999999998865333332 2234458999999999887765444443 3 355777
Q ss_pred cCCC
Q 040379 368 NGNS 371 (373)
Q Consensus 368 ~~n~ 371 (373)
++++
T Consensus 338 ~~~~ 341 (362)
T 2ra8_A 338 SDSQ 341 (362)
T ss_dssp CSBC
T ss_pred cCCc
Confidence 7653
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.13 E-value=1.9e-09 Score=99.59 Aligned_cols=84 Identities=14% Similarity=0.108 Sum_probs=53.9
Q ss_pred cccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCcccCchhhhCC
Q 040379 280 AFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQM 359 (373)
Q Consensus 280 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l 359 (373)
.+..+.+|+.+.+..+ ++.....+|.++.+|+.+++..+ ++..-... +..|.+|+.+.+..+ ++......|.+|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~a---F~~c~~L~~i~lp~~-l~~I~~~aF~~C 365 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRS---FRGCTSLSNINFPLS-LRKIGANAFQGC 365 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTT---TTTCTTCCEECCCTT-CCEECTTTBTTC
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHh---ccCCCCCCEEEECcc-ccEehHHHhhCC
Confidence 4556677777777654 44444566777788888887643 44222223 344557888888665 666666677788
Q ss_pred CCCCEEeCcC
Q 040379 360 SKLRTLSLNG 369 (373)
Q Consensus 360 ~~L~~L~l~~ 369 (373)
++|+.+++..
T Consensus 366 ~~L~~i~lp~ 375 (394)
T 4fs7_A 366 INLKKVELPK 375 (394)
T ss_dssp TTCCEEEEEG
T ss_pred CCCCEEEECC
Confidence 8888877754
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.09 E-value=1.9e-10 Score=104.56 Aligned_cols=183 Identities=15% Similarity=0.137 Sum_probs=121.3
Q ss_pred cccCCCCCCCEEEccCCCCCC-------C-CCCcccCCCCCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCC
Q 040379 152 SHLGNLSALQHLDLSLNHLFS-------A-GNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPP 223 (373)
Q Consensus 152 ~~l~~l~~L~~L~L~~n~~~~-------~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 223 (373)
.++..+++|+.|.+....... . .....+..+++|+.|+++++.-.. ++. + .+++|++|++..+.++.
T Consensus 133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~---l~~-~-~~~~L~~L~L~~~~l~~ 207 (362)
T 2ra8_A 133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS---IGK-K-PRPNLKSLEIISGGLPD 207 (362)
T ss_dssp TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB---CCS-C-BCTTCSEEEEECSBCCH
T ss_pred HhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce---ecc-c-cCCCCcEEEEecCCCCh
Confidence 345567899999987654311 1 112345778999999999873222 222 2 38999999999988764
Q ss_pred CCccccc--CCCCCCccCEEECCC--CcCCCCc-h----hHHH-hccccCcEEEccCcccccccccccc---CCCCCCEE
Q 040379 224 IVPLSLS--NLNYSTSLQFLELSE--NNLTNSI-Y----PWLF-NASSNLVLLGLDSNLLRGSIPVAFK---HMVSVSFL 290 (373)
Q Consensus 224 ~~~~~~~--~l~~~~~L~~L~ls~--n~l~~~~-~----~~~~-~~~~~L~~L~l~~n~l~~~~~~~l~---~l~~L~~L 290 (373)
.....+. .+ ++|+.|+|+. +...+.. . ..+. ...++|+.|++.+|.+.+..+..+. .+++|+.|
T Consensus 208 ~~l~~l~~~~l---p~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~L 284 (362)
T 2ra8_A 208 SVVEDILGSDL---PNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETM 284 (362)
T ss_dssp HHHHHHHHSBC---TTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEE
T ss_pred HHHHHHHHccC---CCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEE
Confidence 3333333 45 8999999863 2222211 1 1111 2356799999999998764443333 57899999
Q ss_pred EccCCcCcccc----cccccCCCCCCeEeCcCCcCcccCchhhhc-cCCCCccCEEECcCCc
Q 040379 291 GLASNEFEGGV----PDFFGNMCSLTMLNISDNKLRGHFPELIQN-LSRFSSLKELYLENNR 347 (373)
Q Consensus 291 ~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~~~~L~~L~L~~n~ 347 (373)
+|+.|.+++.. +..+..+++|+.|++++|.+++..-..+.. + ...+++++++
T Consensus 285 dLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-----g~~~~~~~~~ 341 (362)
T 2ra8_A 285 DISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-----PMKIDVSDSQ 341 (362)
T ss_dssp ECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-----CSEEECCSBC
T ss_pred ECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-----CCEEEecCCc
Confidence 99999998743 333356799999999999998654444443 2 2568998887
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.96 E-value=4.2e-08 Score=90.52 Aligned_cols=87 Identities=11% Similarity=-0.004 Sum_probs=45.8
Q ss_pred CccccCCCCCCEEeCCCCC---CCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcc
Q 040379 102 SPALLQLHRLTYLDLSLNN---FSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDW 178 (373)
Q Consensus 102 ~~~l~~l~~L~~L~l~~n~---l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~ 178 (373)
..+|.++.+|+.+.+..+. ++.. -...|..+.+|+.+.+..+ ++..-...+..+.+|+.+.+..+.. ......
T Consensus 80 ~~AF~~C~~L~~i~~~~n~p~~l~~I-g~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~~~--~I~~~~ 155 (394)
T 4gt6_A 80 SNAFYNCTSLKRVTIQDNKPSCVKKI-GRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEGVT--SVADGM 155 (394)
T ss_dssp TTTTTTCTTCCEEEEGGGCCCCCCEE-CTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTTCC--EECTTT
T ss_pred HHHhhCCccCceEeecCCCCCeeeEe-chhhchhcccceeeccCCc-cceehhhhhhhhcccccccccceee--eecccc
Confidence 3456677778777776542 3321 2234555666666665443 3222234456667777777654322 112224
Q ss_pred cCCCCCCCEEEccC
Q 040379 179 LSHLSSLTYLDLGS 192 (373)
Q Consensus 179 ~~~l~~L~~L~l~~ 192 (373)
+..+..|+.+.+..
T Consensus 156 F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 156 FSYCYSLHTVTLPD 169 (394)
T ss_dssp TTTCTTCCEEECCT
T ss_pred eecccccccccccc
Confidence 55566666666544
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.87 E-value=2.7e-08 Score=91.86 Aligned_cols=237 Identities=15% Similarity=0.078 Sum_probs=136.0
Q ss_pred cccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCCC
Q 040379 104 ALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLS 183 (373)
Q Consensus 104 ~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 183 (373)
+|.++++|+.+.+..+... . -...+..+.+|+.+.+..+ +.......+.++..|+.+.+..+.. ..+ .......
T Consensus 157 aF~~c~~L~~i~l~~~~~~-I-~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~-~i~--~~~~~~~ 230 (394)
T 4fs7_A 157 AFATCESLEYVSLPDSMET-L-HNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY-YLG--DFALSKT 230 (394)
T ss_dssp TTTTCTTCCEEECCTTCCE-E-CTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC-EEC--TTTTTTC
T ss_pred hhcccCCCcEEecCCccce-e-ccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCce-Eee--hhhcccC
Confidence 3444555555555433211 1 2233445555555555443 2212223444555555555443332 011 1123345
Q ss_pred CCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCCCCCcccccCCCCCCccCEEECCCCcCCCCchhHHHhccccC
Q 040379 184 SLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNL 263 (373)
Q Consensus 184 ~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L 263 (373)
.|+.+.+.... .... ...+..+..++.+.+..+.. ......+... ..++.+....+. ++...+..+.+|
T Consensus 231 ~l~~i~ip~~~-~~i~--~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~---~~l~~~~~~~~~----i~~~~F~~~~~L 299 (394)
T 4fs7_A 231 GVKNIIIPDSF-TELG--KSVFYGCTDLESISIQNNKL-RIGGSLFYNC---SGLKKVIYGSVI----VPEKTFYGCSSL 299 (394)
T ss_dssp CCCEEEECTTC-CEEC--SSTTTTCSSCCEEEECCTTC-EECSCTTTTC---TTCCEEEECSSE----ECTTTTTTCTTC
T ss_pred CCceEEECCCc-eecc--cccccccccceeEEcCCCcc-eeeccccccc---cccceeccCcee----eccccccccccc
Confidence 56666654321 1111 14556677777777765532 2233344444 677777766543 344556666779
Q ss_pred cEEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEEC
Q 040379 264 VLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYL 343 (373)
Q Consensus 264 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L 343 (373)
+.+.+..+ ++.....+|.++.+|+.+++..+ ++.....+|.++.+|+.+++..+ ++..-... +..|++|+.+++
T Consensus 300 ~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~a---F~~C~~L~~i~l 373 (394)
T 4fs7_A 300 TEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANA---FQGCINLKKVEL 373 (394)
T ss_dssp CEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTT---BTTCTTCCEEEE
T ss_pred cccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHH---hhCCCCCCEEEE
Confidence 99998765 55445667889999999999754 66566778999999999999876 55332233 456669999999
Q ss_pred cCCcCcccCchhhhCCCCCCEE
Q 040379 344 ENNRLNGFTNNSIGQMSKLRTL 365 (373)
Q Consensus 344 ~~n~l~~~~~~~~~~l~~L~~L 365 (373)
..+- +. ....+.++++|+.+
T Consensus 374 p~~~-~~-~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 374 PKRL-EQ-YRYDFEDTTKFKWI 393 (394)
T ss_dssp EGGG-GG-GGGGBCTTCEEEEE
T ss_pred CCCC-EE-hhheecCCCCCcEE
Confidence 7652 22 24568888888765
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.84 E-value=1.9e-09 Score=88.51 Aligned_cols=114 Identities=14% Similarity=0.120 Sum_probs=59.8
Q ss_pred CccCEEECCCC-cCCCCchhHHHh---ccccCcEEEccCcccccc----ccccccCCCCCCEEEccCCcCccc----ccc
Q 040379 236 TSLQFLELSEN-NLTNSIYPWLFN---ASSNLVLLGLDSNLLRGS----IPVAFKHMVSVSFLGLASNEFEGG----VPD 303 (373)
Q Consensus 236 ~~L~~L~ls~n-~l~~~~~~~~~~---~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~ 303 (373)
++|++|++++| .+.......+.. ..++|++|++++|.+... +...+...++|++|+|++|.+++. +..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 67777777777 666433222222 123466666666666532 233344455666666666666542 234
Q ss_pred cccCCCCCCeEeC--cCCcCcccCchhhh-ccCCCCccCEEECcCCcCc
Q 040379 304 FFGNMCSLTMLNI--SDNKLRGHFPELIQ-NLSRFSSLKELYLENNRLN 349 (373)
Q Consensus 304 ~l~~l~~L~~L~L--~~n~l~~~~p~~~~-~l~~~~~L~~L~L~~n~l~ 349 (373)
.+...++|++|+| ++|.+++.....+. .+...++|++|++++|.+.
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4455556666666 55666543222121 1222335666666666553
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.75 E-value=4.3e-09 Score=86.35 Aligned_cols=122 Identities=16% Similarity=0.183 Sum_probs=68.3
Q ss_pred hhhhhCCCCCCcEEEccCC-CCCCCCccccc-CCCCCCccCEEECCCCcCCCCchhHHHh---ccccCcEEEccCccccc
Q 040379 201 WLQVVGNLPLLTTLYLYRC-HLPPIVPLSLS-NLNYSTSLQFLELSENNLTNSIYPWLFN---ASSNLVLLGLDSNLLRG 275 (373)
Q Consensus 201 ~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~-~l~~~~~L~~L~ls~n~l~~~~~~~~~~---~~~~L~~L~l~~n~l~~ 275 (373)
+...+...+.|++|++++| .+.......+. .+...++|++|++++|.+.+.....+.. ..+.|++|++++|.+.+
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3445566677777777776 66532211111 1122266777777777766433222222 22347777777777664
Q ss_pred c----ccccccCCCCCCEEEc--cCCcCccc----ccccccCCCCCCeEeCcCCcCc
Q 040379 276 S----IPVAFKHMVSVSFLGL--ASNEFEGG----VPDFFGNMCSLTMLNISDNKLR 322 (373)
Q Consensus 276 ~----~~~~l~~l~~L~~L~L--~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~ 322 (373)
. +...+...++|++|+| ++|.++.. +.+.+...++|++|++++|.+.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2 3445556667777777 66776643 2333445567777777777665
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.75 E-value=3e-09 Score=91.87 Aligned_cols=82 Identities=22% Similarity=0.347 Sum_probs=55.5
Q ss_pred cCCCCCCEEEccCCcCcc--cccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCcccCc------
Q 040379 282 KHMVSVSFLGLASNEFEG--GVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTN------ 353 (373)
Q Consensus 282 ~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~------ 353 (373)
.++++|+.|+|++|.+++ .++..+..+++|+.|+|++|++++. ..+..+..+ +|++|+|++|++++..|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGL-KLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccC-CcceEEccCCcCccccCcchhHH
Confidence 456777777777777776 3455566777778888888777754 344555544 67888888888776544
Q ss_pred -hhhhCCCCCCEEe
Q 040379 354 -NSIGQMSKLRTLS 366 (373)
Q Consensus 354 -~~~~~l~~L~~L~ 366 (373)
..+..+|+|+.||
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 2356677777776
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.67 E-value=2e-06 Score=78.79 Aligned_cols=77 Identities=5% Similarity=-0.026 Sum_probs=43.8
Q ss_pred cEEEEEcCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCC
Q 040379 81 HVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSAL 160 (373)
Q Consensus 81 ~v~~l~l~~~~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 160 (373)
.++.+.+.. +++..-..+|.++.+|+.+++..+ ++.. -..+|.++ +|+.+.+..+ +...-...+.. .+|
T Consensus 47 ~i~~v~ip~------~vt~Ig~~aF~~C~~L~~I~lp~~-v~~I-g~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L 115 (379)
T 4h09_A 47 RISEVRVNS------GITSIGEANFNSCYNMTKVTVAST-VTSI-GDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDL 115 (379)
T ss_dssp GCSEEEECT------TEEEECTTTTTTCTTCCEEEECTT-CCEE-CTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCC
T ss_pred CCEEEEeCC------CccChHHHHhhCCCCCCEEEeCCc-ceEe-chhhhcCC-CCceEECCce-eeEeccceecc-CCc
Confidence 456666665 455444567888899999998654 4432 23345555 5666666543 33122223333 367
Q ss_pred CEEEccCC
Q 040379 161 QHLDLSLN 168 (373)
Q Consensus 161 ~~L~L~~n 168 (373)
+.+.+..+
T Consensus 116 ~~i~lp~~ 123 (379)
T 4h09_A 116 DDFEFPGA 123 (379)
T ss_dssp SEEECCTT
T ss_pred ccccCCCc
Confidence 77777544
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.62 E-value=1.5e-08 Score=81.39 Aligned_cols=86 Identities=15% Similarity=0.170 Sum_probs=61.5
Q ss_pred cCcEEEccCccccccccccccCCCCCCEEEccCCc-CcccccccccCC----CCCCeEeCcCCc-CcccCchhhhccCCC
Q 040379 262 NLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNE-FEGGVPDFFGNM----CSLTMLNISDNK-LRGHFPELIQNLSRF 335 (373)
Q Consensus 262 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l----~~L~~L~L~~n~-l~~~~p~~~~~l~~~ 335 (373)
+|+.|+++++.++...-..+..+++|+.|+|++|. +++.....++.+ ++|++|+|++|. +++ ..+..+..+
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD---~Gl~~L~~~ 138 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD---KGIIALHHF 138 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH---HHHHHGGGC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH---HHHHHHhcC
Confidence 38888888888776655667788888888888884 776555666654 468888888874 775 344455566
Q ss_pred CccCEEECcCCc-Ccc
Q 040379 336 SSLKELYLENNR-LNG 350 (373)
Q Consensus 336 ~~L~~L~L~~n~-l~~ 350 (373)
++|++|++++|. +++
T Consensus 139 ~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TTCCEEEEESCTTCCC
T ss_pred CCCCEEECCCCCCCCc
Confidence 788888888875 544
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.56 E-value=3.7e-06 Score=77.41 Aligned_cols=246 Identities=14% Similarity=0.100 Sum_probs=124.0
Q ss_pred ccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCcCCccccCcccccCCCCCCCEEEccCCCCCCCCCCcccCCC
Q 040379 103 PALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHL 182 (373)
Q Consensus 103 ~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l 182 (373)
.+|..+.+|+.+.+..+ ++.. -...+..+.+|+.+.+..+. .......+..+..|+.+.+..+-- ..+. ..+. .
T Consensus 108 ~aF~~c~~L~~i~~~~~-~~~I-~~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~~~-~I~~-~aF~-~ 181 (394)
T 4gt6_A 108 QAFMFCSELTDIPILDS-VTEI-DSEAFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDSVT-AIEE-RAFT-G 181 (394)
T ss_dssp TTTTTCTTCCBCGGGTT-CSEE-CTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTTCC-EECT-TTTT-T
T ss_pred hhchhcccceeeccCCc-ccee-hhhhhhhhccccccccccee-eeecccceecccccccccccceee-Eecc-cccc-c
Confidence 35666777777666543 2221 23345667777777776432 223334566777777777754421 1111 1222 2
Q ss_pred CCCCEEEccCccCCCCcchhhhhCCCCCCcEEEccCCCCC------------------------------------CCCc
Q 040379 183 SSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLP------------------------------------PIVP 226 (373)
Q Consensus 183 ~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~------------------------------------~~~~ 226 (373)
..|+.+.+..+-..- ....+..+..++.......... ....
T Consensus 182 ~~l~~i~ip~~~~~i---~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~ 258 (394)
T 4gt6_A 182 TALTQIHIPAKVTRI---GTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIET 258 (394)
T ss_dssp CCCSEEEECTTCCEE---CTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECT
T ss_pred cceeEEEECCccccc---ccchhhhccccceecccccccccccceeecccccccccccccccccccceEEcCCcceEccc
Confidence 456666554432111 1123344444444433222111 1111
Q ss_pred ccccCCCCCCccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEEEccCCcCccccccccc
Q 040379 227 LSLSNLNYSTSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFG 306 (373)
Q Consensus 227 ~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 306 (373)
.+|. .+..|+.+.+..+.. .+....+..+..|+.+.+.. .++......|.++.+|+.+++..+ ++.....+|.
T Consensus 259 ~aF~---~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~ 331 (394)
T 4gt6_A 259 HAFD---SCAYLASVKMPDSVV--SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFA 331 (394)
T ss_dssp TTTT---TCSSCCEEECCTTCC--EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred ceee---ecccccEEecccccc--eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhh
Confidence 2222 336777777755432 34445555566677777753 344344456777778888887654 4444556677
Q ss_pred CCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCcccCchhhhCCCCCCEEeCcCCC
Q 040379 307 NMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNS 371 (373)
Q Consensus 307 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 371 (373)
++.+|+.+.+..+ ++..-... +..|++|+.+++.++.... ..+..+.+|+.+.+..+.
T Consensus 332 ~C~~L~~i~ip~s-v~~I~~~a---F~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 332 GCEQLERIAIPSS-VTKIPESA---FSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp TCTTCCEEEECTT-CCBCCGGG---GTTCTTCCEEEESSCHHHH---HTCBCCCCC---------
T ss_pred CCCCCCEEEECcc-cCEEhHhH---hhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCC
Confidence 7788888887643 44222223 3445578888887765432 245566777777776654
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.42 E-value=1e-07 Score=76.50 Aligned_cols=82 Identities=10% Similarity=0.056 Sum_probs=34.7
Q ss_pred ccCEEECCCCcCCCCchhHHHhccccCcEEEccCcc-ccccccccccCC----CCCCEEEccCCc-CcccccccccCCCC
Q 040379 237 SLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNL-LRGSIPVAFKHM----VSVSFLGLASNE-FEGGVPDFFGNMCS 310 (373)
Q Consensus 237 ~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~l----~~L~~L~L~~n~-l~~~~~~~l~~l~~ 310 (373)
.|+.||++++.+++.....+ ..+++|+.|++++|. +++..-..++.+ ++|++|+|++|. +++.....+..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 34555555554443333332 223335555555543 333222223322 235555555442 44433334444455
Q ss_pred CCeEeCcCC
Q 040379 311 LTMLNISDN 319 (373)
Q Consensus 311 L~~L~L~~n 319 (373)
|++|++++|
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 555555544
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.31 E-value=1e-06 Score=75.96 Aligned_cols=84 Identities=23% Similarity=0.277 Sum_probs=58.3
Q ss_pred hccccCcEEEccCccccc--cccccccCCCCCCEEEccCCcCccc-ccccccCCCCCCeEeCcCCcCcccCchhh----h
Q 040379 258 NASSNLVLLGLDSNLLRG--SIPVAFKHMVSVSFLGLASNEFEGG-VPDFFGNMCSLTMLNISDNKLRGHFPELI----Q 330 (373)
Q Consensus 258 ~~~~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~p~~~----~ 330 (373)
..+++|+.|++++|++++ .+|..+..+++|+.|+|++|.+++. ....+..+ +|++|+|++|.+.+.+|..- .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 345568888888888886 4556677888999999999998864 12223333 89999999999987665210 1
Q ss_pred ccCCCCccCEEE
Q 040379 331 NLSRFSSLKELY 342 (373)
Q Consensus 331 ~l~~~~~L~~L~ 342 (373)
.+..+|+|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 223445888876
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.22 E-value=0.00013 Score=66.51 Aligned_cols=117 Identities=13% Similarity=0.173 Sum_probs=62.1
Q ss_pred CccCEEECCCCcCCCCchhHHHhccccCcEEEccCccccccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEe
Q 040379 236 TSLQFLELSENNLTNSIYPWLFNASSNLVLLGLDSNLLRGSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLN 315 (373)
Q Consensus 236 ~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 315 (373)
..|+.+.+..+ ++ .+....+..+.+|+.+.+..+ +.......+.++++|+.+.+.++.++.....+|.++.+|+.+.
T Consensus 240 ~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~ 316 (379)
T 4h09_A 240 KALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVT 316 (379)
T ss_dssp SSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEE
T ss_pred ccceEEEcCCC-cc-EeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEE
Confidence 56666666543 22 344444455555666666443 3323334566667777777766666655556666677777777
Q ss_pred CcCCcCcccCchhhhccCCCCccCEEECcCCcCcccCchhhhCCC
Q 040379 316 ISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQMS 360 (373)
Q Consensus 316 L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 360 (373)
|..+ ++..-... +..|++|+.+.+..+ ++......|.+++
T Consensus 317 lp~~-l~~I~~~a---F~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 317 LPTA-LKTIQVYA---FKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CCTT-CCEECTTT---TTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred cCcc-ccEEHHHH---hhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 6543 33111122 234446666666443 4444444555543
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.99 E-value=6.8e-06 Score=67.15 Aligned_cols=84 Identities=14% Similarity=0.118 Sum_probs=41.2
Q ss_pred CccCEEECCCC-cCCCCchhHHHhc---cccCcEEEccCcccccc----ccccccCCCCCCEEEccCCcCccc----ccc
Q 040379 236 TSLQFLELSEN-NLTNSIYPWLFNA---SSNLVLLGLDSNLLRGS----IPVAFKHMVSVSFLGLASNEFEGG----VPD 303 (373)
Q Consensus 236 ~~L~~L~ls~n-~l~~~~~~~~~~~---~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~ 303 (373)
+.|++|++++| .+.+.....+... -..|+.|+|++|.+.+. +.+.+..-+.|+.|+|++|.+++. +.+
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 56777777664 5543222222221 22366666666665532 223333445566666666665532 223
Q ss_pred cccCCCCCCeEeCcCC
Q 040379 304 FFGNMCSLTMLNISDN 319 (373)
Q Consensus 304 ~l~~l~~L~~L~L~~n 319 (373)
.+..-+.|++|+|++|
T Consensus 121 aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQ 136 (197)
T ss_dssp HTTTTCCCSEEECCCC
T ss_pred HHhhCCceeEEECCCC
Confidence 3344455666666543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.93 E-value=6.6e-06 Score=67.22 Aligned_cols=59 Identities=17% Similarity=0.191 Sum_probs=26.3
Q ss_pred CccCEEECCCCcCCCCchhHHHh---ccccCcEEEccCcccccc----ccccccCCCCCCEEEccC
Q 040379 236 TSLQFLELSENNLTNSIYPWLFN---ASSNLVLLGLDSNLLRGS----IPVAFKHMVSVSFLGLAS 294 (373)
Q Consensus 236 ~~L~~L~ls~n~l~~~~~~~~~~---~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~ 294 (373)
+.|+.|+|++|.+.+.....+.. .-+.|+.|+|++|.+.+. +.+.+..-+.|++|+|++
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 45555555555554322222211 112355555555555432 223334444555555554
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.25 E-value=0.0004 Score=52.83 Aligned_cols=58 Identities=21% Similarity=0.314 Sum_probs=39.9
Q ss_pred CEEEccCCcCc-ccccccccCCCCCCeEeCcCCcCcccCchhhhccCCCCccCEEECcCCcCcc
Q 040379 288 SFLGLASNEFE-GGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNG 350 (373)
Q Consensus 288 ~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~~~L~~L~L~~n~l~~ 350 (373)
..++.+++.++ ..+|..+. ++|++|+|++|+|+...+..+..+. +|+.|+|++|.+.-
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~---~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALP---ALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCT---TCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhcc---ccCEEEecCCCeec
Confidence 46788888876 34554332 4688888888888854444555554 78888888887753
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.72 E-value=0.003 Score=47.90 Aligned_cols=56 Identities=25% Similarity=0.356 Sum_probs=29.3
Q ss_pred EEEccCcccc-ccccccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcCCcCc
Q 040379 265 LLGLDSNLLR-GSIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLR 322 (373)
Q Consensus 265 ~L~l~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 322 (373)
.++.+++.++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4444454443 23333221 24566666666666544455556666666666666554
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=40.47 E-value=34 Score=23.81 Aligned_cols=40 Identities=13% Similarity=0.107 Sum_probs=22.4
Q ss_pred cccccCCCCCCEEEccCCcCcccccccccCCCCCCeEeCcC
Q 040379 278 PVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISD 318 (373)
Q Consensus 278 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 318 (373)
...|.++.+|+.+.+..+ ++.....+|.+|.+|+.+.+.+
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 345556666666666553 2324445566666666666654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=39.75 E-value=51 Score=22.89 Aligned_cols=13 Identities=31% Similarity=0.370 Sum_probs=5.5
Q ss_pred ccCCCCCCCEEEc
Q 040379 153 HLGNLSALQHLDL 165 (373)
Q Consensus 153 ~l~~l~~L~~L~L 165 (373)
.|.+|.+|+.+.+
T Consensus 38 aF~~C~~L~~i~~ 50 (100)
T 2lz0_A 38 MFSGCTALEKLIL 50 (100)
T ss_dssp SSTTCTTCCCEEE
T ss_pred HHhccCCccEEEE
Confidence 3344444444444
Done!