BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040384
(224 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ETE|A Chain A, Recombinant Oxalate Oxidase In Complex With Glycolate
pdb|2ETE|B Chain B, Recombinant Oxalate Oxidase In Complex With Glycolate
Length = 201
Score = 197 bits (501), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 105/196 (53%), Positives = 131/196 (66%), Gaps = 7/196 (3%)
Query: 23 ADPDPLQDICIADLDAK-ISVNGFPCKPETEVTSDDFFFD--LSEEGNLSNAFGRAVTEG 79
+DPDPLQD C+ADLD K +SVNG CKP +E DDF F L++ GN S G AVTE
Sbjct: 1 SDPDPLQDFCVADLDGKAVSVNGHTCKPMSEA-GDDFLFSSKLTKAGNTSTPNGSAVTEL 59
Query: 80 NVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGII---TTDNVFY 136
+V E+PG NT G+S NRVD A GG NPPH+HPR++E +V++G +LVGI+ + N Y
Sbjct: 60 DVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLY 119
Query: 137 SKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVL 196
S+VV AG F+IPRGL+HFQ NVGK SFNSQ PG FV +LF + PPIP VL
Sbjct: 120 SRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVL 179
Query: 197 TKTFLVGDEVINAIKA 212
TK V V+ +K+
Sbjct: 180 TKALRVEAGVVELLKS 195
>pdb|1FI2|A Chain A, Crystal Structure Of Germin (Oxalate Oxidase)
pdb|2ET1|A Chain A, Oxalate Oxidase In Complex With Substrate Analogue
Glycolate
Length = 201
Score = 197 bits (500), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 105/195 (53%), Positives = 130/195 (66%), Gaps = 7/195 (3%)
Query: 24 DPDPLQDICIADLDAK-ISVNGFPCKPETEVTSDDFFFD--LSEEGNLSNAFGRAVTEGN 80
DPDPLQD C+ADLD K +SVNG CKP +E DDF F L++ GN S G AVTE +
Sbjct: 2 DPDPLQDFCVADLDGKAVSVNGHTCKPMSEA-GDDFLFSSKLTKAGNTSTPNGSAVTELD 60
Query: 81 VHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGII---TTDNVFYS 137
V E+PG NT G+S NRVD A GG NPPH+HPR++E +V++G +LVGI+ + N YS
Sbjct: 61 VAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYS 120
Query: 138 KVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLT 197
+VV AG F+IPRGL+HFQ NVGK SFNSQ PG FV +LF + PPIP VLT
Sbjct: 121 RVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLT 180
Query: 198 KTFLVGDEVINAIKA 212
K V V+ +K+
Sbjct: 181 KALRVEAGVVELLKS 195
>pdb|2ET7|A Chain A, Structural And Spectroscopic Insights Into The Mechanism
Of Oxalate Oxidase
Length = 201
Score = 195 bits (495), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 104/196 (53%), Positives = 130/196 (66%), Gaps = 7/196 (3%)
Query: 23 ADPDPLQDICIADLDAK-ISVNGFPCKPETEVTSDDFFFD--LSEEGNLSNAFGRAVTEG 79
+DPDPLQD C+ADLD K +SVNG CKP +E DDF F L++ GN S G AVTE
Sbjct: 1 SDPDPLQDFCVADLDGKAVSVNGHTCKPMSEA-GDDFLFSSKLTKAGNTSTPNGSAVTEL 59
Query: 80 NVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGII---TTDNVFY 136
+V E+PG NT G+S RVD A GG NPPH+HPR++E +V++G +LVGI+ + N Y
Sbjct: 60 DVAEWPGTNTLGVSMARVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLY 119
Query: 137 SKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVL 196
S+VV AG F+IPRGL+HFQ NVGK SFNSQ PG FV +LF + PPIP VL
Sbjct: 120 SRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVL 179
Query: 197 TKTFLVGDEVINAIKA 212
TK V V+ +K+
Sbjct: 180 TKALRVEAGVVELLKS 195
>pdb|3EHK|A Chain A, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|B Chain B, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|C Chain C, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|D Chain D, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|E Chain E, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|F Chain F, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3FZ3|A Chain A, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|B Chain B, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|C Chain C, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|D Chain D, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|E Chain E, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|F Chain F, Crystal Structure Of Almond Pru1 Protein
Length = 531
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 57/137 (41%), Gaps = 11/137 (8%)
Query: 80 NVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTD-NVFYSK 138
N H P + +S R GI PH + + VIRG V ++ + + +
Sbjct: 382 NSHNLPILRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAILDQ 441
Query: 139 VVTAGMLFLIPR--GLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTT--PPIPNE 194
V G LF++P+ G++ N G E F N+ F+++ T+ +P+E
Sbjct: 442 EVQQGQLFIVPQNHGVIQQAGNQGFEYFAFKTEENA------FINTLAGRTSFLRALPDE 495
Query: 195 VLTKTFLVGDEVINAIK 211
VL + + E +K
Sbjct: 496 VLANAYQISREQARQLK 512
>pdb|1OD5|A Chain A, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
pdb|1OD5|B Chain B, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
Length = 492
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 10/139 (7%)
Query: 84 FPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTD-NVFYSKVVTA 142
P + G+S V L GI PH + ++ V RG V ++ N + +
Sbjct: 358 LPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQGNAVFDGELRR 417
Query: 143 GMLFLIPRGLVHFQL--NVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTKTF 200
G L ++P+ V + G E V+F N+ V S + + IP+EVL+ ++
Sbjct: 418 GQLLVVPQNFVVAEQGGEQGLEYVVFKTHHNA-------VSSYIKDVFRAIPSEVLSNSY 470
Query: 201 LVGDEVINAIKAAITSAQL 219
+G + +K S L
Sbjct: 471 NLGQSQVRQLKYQGNSGPL 489
>pdb|2D5F|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5F|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|C Chain C, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|D Chain D, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|E Chain E, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|F Chain F, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
Length = 493
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 10/139 (7%)
Query: 84 FPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTD-NVFYSKVVTA 142
P + G+S V L GI PH + ++ V RG V ++ N + +
Sbjct: 359 LPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNXQGNAVFDGELRR 418
Query: 143 GMLFLIPRGLVHFQL--NVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTKTF 200
G L ++P+ V + G E V+F N+ V S + + IP+EVL+ ++
Sbjct: 419 GQLLVVPQNFVVAEQGGEQGLEYVVFKTHHNA-------VSSYIKDVFRAIPSEVLSNSY 471
Query: 201 LVGDEVINAIKAAITSAQL 219
+G + +K S L
Sbjct: 472 NLGQSQVRQLKYQGNSGPL 490
>pdb|2VQA|A Chain A, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|B Chain B, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|C Chain C, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca
Length = 361
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 36/83 (43%)
Query: 89 TQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLI 148
++G++ + L G I H H ++E + V+ G + + + + V G L+
Sbjct: 49 SKGMAGVYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVEIADVDKGGLWYF 108
Query: 149 PRGLVHFQLNVGKENVLFFPSFN 171
PRG H +G + F FN
Sbjct: 109 PRGWGHSIEGIGPDTAKFLLVFN 131
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/138 (19%), Positives = 53/138 (38%), Gaps = 6/138 (4%)
Query: 73 GRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTD 132
G + + EFPG + ++ + L G + H HP + E V+ G + + + ++
Sbjct: 217 GNELRLASAKEFPG--SFNMTGALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASE 274
Query: 133 NVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIP 192
+ G + +P+G H N ++ + FN + L P
Sbjct: 275 GKASVSRLQQGDVGYVPKGYGHAIRNSSQKPLDIVVVFND----GDYQSIDLSTWLASNP 330
Query: 193 NEVLTKTFLVGDEVINAI 210
+ VL TF + E+ +
Sbjct: 331 SSVLGNTFQISPELTKKL 348
>pdb|3RJ1|B Chain B, Architecture Of The Mediator Head Module
pdb|3RJ1|I Chain I, Architecture Of The Mediator Head Module
pdb|3RJ1|P Chain P, Architecture Of The Mediator Head Module
Length = 583
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 142 AGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHS 182
+G + RG+ + + N+ +N+ P +S GT FVHS
Sbjct: 247 SGSTYKHDRGIANIRNNIESQNLDLIPHSSSVFKGTDFVHS 287
>pdb|4GWP|B Chain B, Structure Of The Mediator Head Module From S. Cerevisiae
pdb|4GWQ|B Chain B, Structure Of The Mediator Head Module From S. Cerevisiae
In Complex With The Carboxy-Terminal Domain (Ctd) Of Rna
Polymerase Ii Rpb1 Subunit
Length = 687
Score = 28.1 bits (61), Expect = 3.8, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 150 RGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHS 182
RG+ + + N+ +N+ P +S GT FVHS
Sbjct: 352 RGIANIRNNIESQNLDLIPHSSSVFKGTDFVHS 384
>pdb|2EVX|A Chain A, Crystal Structure Of Pumpkin Seed Globulin
pdb|2E9Q|A Chain A, Recombinant Pro-11s Globulin Of Pumpkin
Length = 459
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 3/93 (3%)
Query: 63 SEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRG 122
SE ++ N G ++ N H P + +S R L + PH S RG
Sbjct: 293 SERADVFNPRGGRISTANYHTLPILRQVRLSAERGVLYSNAMVAPHYTVNSHSVMYATRG 352
Query: 123 TVLVGIITT--DNVFYSKVVTAGMLFLIPRGLV 153
V ++ +VF + V G + +IP+ V
Sbjct: 353 NARVQVVDNFGQSVFDGE-VREGQVLMIPQNFV 384
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,069,452
Number of Sequences: 62578
Number of extensions: 237948
Number of successful extensions: 550
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 532
Number of HSP's gapped (non-prelim): 11
length of query: 224
length of database: 14,973,337
effective HSP length: 95
effective length of query: 129
effective length of database: 9,028,427
effective search space: 1164667083
effective search space used: 1164667083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)