Query 040384
Match_columns 224
No_of_seqs 265 out of 1715
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 07:53:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040384.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040384hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00212 glutelin; Provisional 100.0 3.3E-28 7.3E-33 227.4 18.3 155 66-224 322-479 (493)
2 TIGR03404 bicupin_oxalic bicup 100.0 1.2E-27 2.7E-32 217.9 19.9 163 44-213 200-362 (367)
3 PLN00212 glutelin; Provisional 99.9 3.5E-26 7.7E-31 213.8 19.8 149 70-223 59-259 (493)
4 PF00190 Cupin_1: Cupin; Inte 99.9 5.9E-26 1.3E-30 181.5 13.4 136 60-208 1-144 (144)
5 TIGR03404 bicupin_oxalic bicup 99.9 5.9E-24 1.3E-28 193.8 17.7 146 57-213 37-185 (367)
6 smart00835 Cupin_1 Cupin. This 99.9 5.4E-21 1.2E-25 153.1 16.8 135 69-207 7-145 (146)
7 COG2140 Thermophilic glucose-6 99.8 2.1E-18 4.6E-23 144.5 12.9 150 54-214 49-200 (209)
8 PF07883 Cupin_2: Cupin domain 99.4 7.7E-13 1.7E-17 92.1 8.8 70 96-170 2-71 (71)
9 COG1917 Uncharacterized conser 99.3 9.6E-12 2.1E-16 97.5 10.9 86 82-172 33-118 (131)
10 PRK04190 glucose-6-phosphate i 99.3 2.9E-11 6.3E-16 101.3 14.3 97 76-173 53-157 (191)
11 COG0662 {ManC} Mannose-6-phosp 99.3 2.9E-11 6.3E-16 94.8 11.6 81 90-175 34-114 (127)
12 PRK13290 ectC L-ectoine syntha 99.3 7E-11 1.5E-15 92.7 11.4 82 90-177 33-114 (125)
13 COG3837 Uncharacterized conser 99.1 1.3E-09 2.9E-14 87.6 9.9 84 83-173 35-121 (161)
14 TIGR01479 GMP_PMI mannose-1-ph 99.0 2.4E-09 5.2E-14 100.9 12.0 76 91-171 375-450 (468)
15 PF01050 MannoseP_isomer: Mann 99.0 6.2E-09 1.3E-13 84.2 11.3 76 89-169 60-135 (151)
16 PRK15460 cpsB mannose-1-phosph 99.0 4.4E-09 9.5E-14 99.3 11.4 78 89-171 382-459 (478)
17 PRK09943 DNA-binding transcrip 99.0 8.8E-09 1.9E-13 85.4 11.6 76 90-171 105-181 (185)
18 PRK11171 hypothetical protein; 98.9 2.5E-08 5.4E-13 87.6 14.4 78 89-171 58-136 (266)
19 TIGR03214 ura-cupin putative a 98.9 1.8E-08 3.9E-13 88.2 10.7 74 91-170 178-252 (260)
20 COG4101 Predicted mannose-6-ph 98.8 3.6E-08 7.8E-13 76.0 9.5 84 91-177 45-129 (142)
21 TIGR03214 ura-cupin putative a 98.7 1.5E-07 3.2E-12 82.5 12.3 77 90-171 56-133 (260)
22 PRK11171 hypothetical protein; 98.7 3.6E-07 7.9E-12 80.3 13.9 75 91-171 183-258 (266)
23 PF06560 GPI: Glucose-6-phosph 98.7 2.2E-07 4.7E-12 77.3 11.5 86 87-172 45-146 (182)
24 PF02041 Auxin_BP: Auxin bindi 98.7 4E-07 8.6E-12 72.9 11.2 92 91-183 43-139 (167)
25 PRK13264 3-hydroxyanthranilate 98.5 9.2E-07 2E-11 73.0 9.0 58 100-159 42-99 (177)
26 TIGR03037 anthran_nbaC 3-hydro 98.5 1.1E-06 2.4E-11 71.5 9.3 60 100-161 36-95 (159)
27 PF11699 CENP-C_C: Mif2/CENP-C 98.4 2.8E-06 6.1E-11 62.3 9.7 72 91-167 11-82 (85)
28 PF02311 AraC_binding: AraC-li 98.3 2.3E-06 5E-11 65.0 7.9 62 101-168 12-73 (136)
29 PF03079 ARD: ARD/ARD' family; 98.3 7.1E-06 1.5E-10 66.8 10.2 67 104-171 84-150 (157)
30 PF12973 Cupin_7: ChrR Cupin-l 98.3 2E-06 4.2E-11 63.4 6.2 66 91-168 23-88 (91)
31 TIGR02272 gentisate_1_2 gentis 98.2 7E-06 1.5E-10 74.4 9.0 76 91-171 80-155 (335)
32 TIGR02451 anti_sig_ChrR anti-s 98.2 3.8E-06 8.2E-11 71.7 6.7 75 91-175 126-200 (215)
33 PRK10371 DNA-binding transcrip 98.1 9.2E-06 2E-10 72.3 8.5 61 95-161 29-89 (302)
34 COG1791 Uncharacterized conser 98.1 1.7E-05 3.8E-10 64.8 9.3 71 106-178 89-159 (181)
35 PRK15457 ethanolamine utilizat 98.1 2.1E-05 4.6E-10 67.4 10.1 69 91-169 156-224 (233)
36 COG4297 Uncharacterized protei 98.1 7.8E-06 1.7E-10 64.7 6.6 67 101-170 51-118 (163)
37 PRK10296 DNA-binding transcrip 98.0 4.2E-05 9.2E-10 66.6 10.0 52 102-159 33-84 (278)
38 PF14499 DUF4437: Domain of un 98.0 1.1E-05 2.3E-10 70.4 5.6 73 90-167 34-106 (251)
39 PF06339 Ectoine_synth: Ectoin 98.0 0.00012 2.6E-09 57.1 10.5 84 88-177 31-114 (126)
40 COG3435 Gentisate 1,2-dioxygen 97.9 1.8E-05 3.9E-10 70.1 6.0 115 52-172 43-167 (351)
41 PF05523 FdtA: WxcM-like, C-te 97.9 0.00025 5.3E-09 56.0 12.0 93 72-168 14-108 (131)
42 PRK13501 transcriptional activ 97.9 3.7E-05 7.9E-10 67.6 7.8 55 101-161 27-81 (290)
43 PRK13500 transcriptional activ 97.9 5.2E-05 1.1E-09 67.7 8.3 55 101-161 57-111 (312)
44 TIGR02297 HpaA 4-hydroxyphenyl 97.8 6.3E-05 1.4E-09 65.6 7.5 57 102-163 33-89 (287)
45 PF05899 Cupin_3: Protein of u 97.8 0.00012 2.5E-09 52.1 7.0 59 92-157 7-65 (74)
46 PRK13503 transcriptional activ 97.8 6.4E-05 1.4E-09 65.2 6.6 54 101-160 24-77 (278)
47 PRK13502 transcriptional activ 97.7 0.00011 2.4E-09 64.0 7.5 55 101-161 27-81 (282)
48 KOG2107 Uncharacterized conser 97.5 0.00021 4.5E-09 58.2 5.5 54 104-158 85-138 (179)
49 TIGR02272 gentisate_1_2 gentis 97.4 0.00069 1.5E-08 61.5 8.6 88 72-169 231-319 (335)
50 PF06249 EutQ: Ethanolamine ut 97.4 0.0006 1.3E-08 55.2 7.1 58 92-157 77-134 (152)
51 COG1898 RfbC dTDP-4-dehydrorha 97.4 0.0017 3.6E-08 53.7 9.9 70 92-165 49-127 (173)
52 COG3257 GlxB Uncharacterized p 97.4 0.0013 2.9E-08 56.0 9.3 73 92-169 61-134 (264)
53 PF06052 3-HAO: 3-hydroxyanthr 97.3 0.0043 9.3E-08 49.9 10.4 63 98-162 39-101 (151)
54 PF00908 dTDP_sugar_isom: dTDP 97.1 0.004 8.7E-08 51.6 9.1 78 100-177 51-139 (176)
55 TIGR01221 rmlC dTDP-4-dehydror 97.0 0.0067 1.4E-07 50.3 9.4 69 100-169 52-130 (176)
56 COG3450 Predicted enzyme of th 96.9 0.0083 1.8E-07 46.5 8.3 61 92-159 45-105 (116)
57 PF05995 CDO_I: Cysteine dioxy 96.8 0.026 5.6E-07 46.6 11.7 83 91-173 74-165 (175)
58 COG4766 EutQ Ethanolamine util 96.7 0.013 2.8E-07 47.4 8.2 63 91-161 99-161 (176)
59 PF13621 Cupin_8: Cupin-like d 96.5 0.016 3.4E-07 49.0 8.6 67 93-160 131-233 (251)
60 PF04209 HgmA: homogentisate 1 96.4 0.049 1.1E-06 51.0 11.4 87 78-171 112-199 (424)
61 COG3435 Gentisate 1,2-dioxygen 96.3 0.014 2.9E-07 52.2 7.2 90 71-169 241-331 (351)
62 PF13759 2OG-FeII_Oxy_5: Putat 95.4 0.07 1.5E-06 39.7 6.6 71 97-167 5-98 (101)
63 PF02678 Pirin: Pirin; InterP 95.2 0.085 1.8E-06 40.2 6.6 62 102-167 39-103 (107)
64 PF12852 Cupin_6: Cupin 95.1 0.088 1.9E-06 43.2 7.1 44 114-160 36-79 (186)
65 TIGR01015 hmgA homogentisate 1 95.0 0.22 4.7E-06 46.7 10.0 62 105-171 140-201 (429)
66 PRK05341 homogentisate 1,2-dio 94.8 0.25 5.4E-06 46.4 9.9 57 105-167 146-202 (438)
67 PF08007 Cupin_4: Cupin superf 94.7 0.24 5.3E-06 44.5 9.3 67 93-160 114-200 (319)
68 TIGR02466 conserved hypothetic 94.5 0.14 3E-06 43.4 6.9 75 96-171 100-197 (201)
69 PF07385 DUF1498: Protein of u 94.4 0.4 8.6E-06 41.2 9.4 67 96-162 91-180 (225)
70 PLN02658 homogentisate 1,2-dio 94.3 0.37 8.1E-06 45.2 9.8 59 107-170 141-200 (435)
71 COG1741 Pirin-related protein 94.1 0.14 3.1E-06 45.3 6.4 60 96-159 48-109 (276)
72 PRK10572 DNA-binding transcrip 94.0 0.21 4.5E-06 43.6 7.2 44 112-160 48-91 (290)
73 PF05118 Asp_Arg_Hydrox: Aspar 94.0 0.57 1.2E-05 38.0 9.2 70 93-167 81-155 (163)
74 PF02373 JmjC: JmjC domain, hy 93.7 0.16 3.5E-06 37.8 5.2 29 134-162 79-107 (114)
75 PRK12335 tellurite resistance 93.6 0.31 6.7E-06 42.9 7.6 61 100-160 19-82 (287)
76 PF05726 Pirin_C: Pirin C-term 92.9 0.76 1.6E-05 34.4 7.8 68 95-170 2-69 (104)
77 PF06865 DUF1255: Protein of u 92.7 1.2 2.6E-05 33.2 8.4 60 94-159 25-84 (94)
78 PRK09391 fixK transcriptional 92.5 2.5 5.5E-05 35.7 11.4 130 90-221 34-210 (230)
79 COG5553 Predicted metal-depend 92.5 0.47 1E-05 38.9 6.4 77 92-170 73-155 (191)
80 PRK10579 hypothetical protein; 92.2 2.5 5.4E-05 31.5 9.5 55 98-158 29-83 (94)
81 PF14499 DUF4437: Domain of un 92.2 0.14 3.1E-06 44.8 3.3 76 91-171 170-245 (251)
82 COG3508 HmgA Homogentisate 1,2 91.7 2 4.3E-05 39.5 10.1 67 90-161 123-189 (427)
83 PRK11753 DNA-binding transcrip 91.3 4.3 9.3E-05 33.2 11.2 127 95-222 21-200 (211)
84 COG3806 ChrR Transcriptional a 91.3 0.67 1.4E-05 39.2 6.2 90 69-173 110-199 (216)
85 PRK09685 DNA-binding transcrip 91.2 1.1 2.5E-05 39.1 8.1 66 91-161 44-114 (302)
86 PF06172 Cupin_5: Cupin superf 90.7 7.3 0.00016 31.0 11.5 97 71-168 14-123 (139)
87 PF11142 DUF2917: Protein of u 90.0 1.1 2.4E-05 30.8 5.5 56 98-158 3-58 (63)
88 COG3822 ABC-type sugar transpo 90.0 1.9 4.1E-05 36.4 7.7 65 96-160 90-177 (225)
89 PRK15131 mannose-6-phosphate i 89.7 2.8 6.2E-05 38.9 9.6 59 91-157 320-378 (389)
90 PLN02288 mannose-6-phosphate i 89.4 1.1 2.5E-05 41.6 6.8 58 91-152 333-390 (394)
91 PF07847 DUF1637: Protein of u 89.1 2.1 4.6E-05 36.2 7.6 85 87-172 39-143 (200)
92 COG3257 GlxB Uncharacterized p 88.7 2.5 5.4E-05 36.4 7.7 79 83-167 173-252 (264)
93 KOG3706 Uncharacterized conser 88.1 0.38 8.2E-06 45.7 2.6 63 95-158 319-403 (629)
94 TIGR00218 manA mannose-6-phosp 88.1 4.8 0.0001 35.8 9.7 60 90-157 233-292 (302)
95 KOG3995 3-hydroxyanthranilate 86.5 1.5 3.2E-05 37.5 5.1 53 106-160 47-99 (279)
96 PRK00924 5-keto-4-deoxyuronate 86.4 6.2 0.00014 35.1 9.2 76 90-167 173-254 (276)
97 KOG2757 Mannose-6-phosphate is 86.4 4 8.8E-05 37.6 8.1 76 84-167 327-402 (411)
98 PF14525 AraC_binding_2: AraC- 85.8 9.3 0.0002 29.7 9.3 42 115-161 57-98 (172)
99 COG2850 Uncharacterized conser 85.7 1.6 3.4E-05 40.2 5.2 71 84-159 113-202 (383)
100 PRK10402 DNA-binding transcrip 84.3 9.6 0.00021 32.0 9.2 123 97-223 34-202 (226)
101 PRK11161 fumarate/nitrate redu 84.0 8.5 0.00018 32.2 8.7 122 97-222 40-216 (235)
102 PF09313 DUF1971: Domain of un 83.6 7.4 0.00016 28.2 7.0 60 101-161 12-75 (82)
103 PF04962 KduI: KduI/IolB famil 82.5 14 0.00031 32.4 9.7 75 74-151 135-225 (261)
104 PRK13918 CRP/FNR family transc 80.3 6.6 0.00014 31.9 6.6 125 96-223 8-182 (202)
105 KOG2130 Phosphatidylserine-spe 78.1 5.8 0.00013 36.1 5.8 95 79-178 196-305 (407)
106 PF04622 ERG2_Sigma1R: ERG2 an 77.6 8.4 0.00018 33.0 6.4 95 100-205 109-205 (216)
107 PF00027 cNMP_binding: Cyclic 77.6 5.6 0.00012 27.2 4.7 49 98-147 3-52 (91)
108 KOG1417 Homogentisate 1,2-diox 77.3 57 0.0012 29.6 11.9 86 91-181 133-220 (446)
109 PLN02868 acyl-CoA thioesterase 73.5 11 0.00025 34.9 6.8 52 96-148 33-84 (413)
110 PF04115 Ureidogly_hydro: Urei 72.2 35 0.00077 27.7 8.7 79 91-169 56-143 (165)
111 COG1482 ManA Phosphomannose is 71.8 33 0.00071 31.1 9.0 59 91-157 241-299 (312)
112 PRK03606 ureidoglycolate hydro 70.8 33 0.00073 28.0 8.1 67 91-157 55-128 (162)
113 KOG3416 Predicted nucleic acid 70.3 16 0.00034 28.8 5.8 65 85-158 12-80 (134)
114 COG3123 Uncharacterized protei 69.2 18 0.0004 26.5 5.5 43 111-156 39-81 (94)
115 smart00100 cNMP Cyclic nucleot 68.6 31 0.00068 24.0 7.0 53 96-149 19-72 (120)
116 cd00038 CAP_ED effector domain 66.9 23 0.0005 24.7 6.0 53 95-148 18-71 (115)
117 PF00325 Crp: Bacterial regula 66.9 3.4 7.4E-05 24.6 1.2 30 191-220 3-32 (32)
118 PHA02984 hypothetical protein; 63.8 48 0.0011 29.4 8.1 51 114-166 92-144 (286)
119 TIGR00218 manA mannose-6-phosp 61.3 4.5 9.7E-05 36.1 1.4 19 137-155 152-170 (302)
120 PRK00924 5-keto-4-deoxyuronate 60.4 81 0.0018 28.1 9.1 53 110-167 70-125 (276)
121 TIGR03697 NtcA_cyano global ni 60.3 22 0.00047 28.5 5.2 33 190-222 143-175 (193)
122 PRK15186 AraC family transcrip 59.0 38 0.00083 30.1 6.9 46 114-163 39-84 (291)
123 COG1482 ManA Phosphomannose is 57.6 8.9 0.00019 34.7 2.6 21 137-157 159-179 (312)
124 PHA02890 hypothetical protein; 56.7 73 0.0016 28.1 8.0 44 114-158 91-136 (278)
125 smart00550 Zalpha Z-DNA-bindin 56.0 12 0.00026 25.7 2.6 33 190-222 22-54 (68)
126 PRK02290 3-dehydroquinate synt 55.1 47 0.001 30.5 6.9 84 71-158 250-336 (344)
127 COG1741 Pirin-related protein 54.8 1.6E+02 0.0034 26.2 11.2 43 83-127 165-207 (276)
128 COG0664 Crp cAMP-binding prote 54.3 41 0.00089 26.7 5.9 126 94-223 23-204 (214)
129 PF13384 HTH_23: Homeodomain-l 54.2 14 0.0003 23.2 2.5 29 191-219 18-46 (50)
130 PRK13395 ureidoglycolate hydro 53.2 92 0.002 25.7 7.8 79 91-169 55-141 (171)
131 PF04962 KduI: KduI/IolB famil 52.9 88 0.0019 27.5 8.1 65 92-161 27-99 (261)
132 PRK14585 pgaD putative PGA bio 52.7 16 0.00034 29.1 3.0 25 189-213 88-112 (137)
133 PRK09392 ftrB transcriptional 52.2 34 0.00074 28.5 5.3 122 96-221 32-204 (236)
134 PRK15131 mannose-6-phosphate i 51.9 16 0.00034 34.1 3.4 23 135-157 236-258 (389)
135 KOG4281 Uncharacterized conser 51.1 7.3 0.00016 33.4 1.0 43 88-130 71-113 (236)
136 PRK10202 ebgC cryptic beta-D-g 51.0 39 0.00085 27.0 5.2 52 106-157 58-127 (149)
137 KOG2131 Uncharacterized conser 50.2 28 0.00061 32.3 4.6 65 96-162 201-294 (427)
138 PF01959 DHQS: 3-dehydroquinat 48.5 67 0.0015 29.6 6.8 85 71-159 260-347 (354)
139 PF13994 PgaD: PgaD-like prote 47.9 23 0.0005 27.9 3.3 23 191-213 101-123 (138)
140 PF14801 GCD14_N: tRNA methylt 47.1 45 0.00097 22.3 4.0 31 125-155 11-41 (54)
141 PRK14584 hmsS hemin storage sy 46.7 24 0.00052 28.7 3.3 24 190-213 98-121 (153)
142 PF13640 2OG-FeII_Oxy_3: 2OG-F 46.7 54 0.0012 23.4 5.0 63 97-159 4-86 (100)
143 PF13464 DUF4115: Domain of un 45.1 1E+02 0.0022 21.3 7.8 48 119-167 4-52 (77)
144 cd00092 HTH_CRP helix_turn_hel 45.1 27 0.0006 22.9 3.0 33 190-222 25-57 (67)
145 PF00166 Cpn10: Chaperonin 10 44.2 37 0.00079 24.8 3.7 55 101-158 21-76 (93)
146 PF13412 HTH_24: Winged helix- 42.8 21 0.00047 22.2 2.0 33 188-220 15-47 (48)
147 PF13545 HTH_Crp_2: Crp-like h 42.8 19 0.0004 24.6 1.9 31 191-221 29-59 (76)
148 PF08220 HTH_DeoR: DeoR-like h 42.6 19 0.00042 23.7 1.8 34 190-223 14-47 (57)
149 smart00419 HTH_CRP helix_turn_ 40.3 33 0.00072 20.8 2.6 32 191-222 9-40 (48)
150 PF02787 CPSase_L_D3: Carbamoy 39.3 29 0.00063 26.9 2.6 27 190-216 72-98 (123)
151 PRK00364 groES co-chaperonin G 38.2 1.3E+02 0.0029 22.1 5.9 25 132-156 51-75 (95)
152 TIGR01610 phage_O_Nterm phage 38.2 32 0.00069 25.2 2.6 34 190-223 47-80 (95)
153 smart00420 HTH_DEOR helix_turn 37.5 36 0.00077 20.9 2.5 33 190-222 14-46 (53)
154 TIGR00022 uncharacterized prot 35.1 1E+02 0.0022 24.2 5.2 27 104-130 60-86 (142)
155 PF01456 Mucin: Mucin-like gly 35.0 28 0.00061 27.1 2.0 19 1-19 1-19 (143)
156 KOG0500 Cyclic nucleotide-gate 34.8 72 0.0016 30.8 4.9 32 113-146 348-379 (536)
157 PF04074 DUF386: Domain of unk 33.5 94 0.002 24.6 4.8 53 104-156 60-133 (153)
158 smart00345 HTH_GNTR helix_turn 33.4 41 0.00089 21.2 2.3 32 191-222 20-52 (60)
159 COG3542 Uncharacterized conser 33.1 2.7E+02 0.0058 22.7 14.2 58 93-153 45-110 (162)
160 COG0234 GroS Co-chaperonin Gro 32.9 1.4E+02 0.003 22.4 5.2 57 100-161 21-80 (96)
161 smart00344 HTH_ASNC helix_turn 32.7 44 0.00096 24.4 2.6 35 188-222 15-49 (108)
162 COG2731 EbgC Beta-galactosidas 32.4 1.1E+02 0.0024 24.8 5.0 59 101-159 57-135 (154)
163 PRK13918 CRP/FNR family transc 31.2 48 0.001 26.7 2.9 10 191-200 161-170 (202)
164 COG3718 IolB Uncharacterized e 31.0 3.4E+02 0.0074 23.8 8.0 82 76-161 16-102 (270)
165 cd00320 cpn10 Chaperonin 10 Kd 30.6 1.5E+02 0.0032 21.7 5.1 25 132-156 50-74 (93)
166 cd07377 WHTH_GntR Winged helix 30.4 58 0.0013 20.9 2.7 32 191-222 25-57 (66)
167 PF13348 Y_phosphatase3C: Tyro 30.2 48 0.001 22.3 2.3 27 183-213 40-66 (68)
168 PF13730 HTH_36: Helix-turn-he 29.4 46 0.00099 21.2 2.0 29 192-220 27-55 (55)
169 KOG2132 Uncharacterized conser 29.2 47 0.001 30.4 2.6 76 82-158 240-348 (355)
170 PF09012 FeoC: FeoC like trans 28.5 43 0.00093 22.8 1.8 32 191-222 15-46 (69)
171 KOG1633 F-box protein JEMMA an 28.2 65 0.0014 32.9 3.6 76 96-172 140-232 (776)
172 PHA00675 hypothetical protein 26.8 65 0.0014 23.2 2.5 33 190-222 39-71 (78)
173 PF02796 HTH_7: Helix-turn-hel 26.6 77 0.0017 19.7 2.6 29 183-213 16-44 (45)
174 PLN03192 Voltage-dependent pot 25.6 1.2E+02 0.0026 30.8 5.1 52 94-146 397-448 (823)
175 PF06413 Neugrin: Neugrin; In 25.2 78 0.0017 27.3 3.2 26 191-216 30-56 (225)
176 PF06719 AraC_N: AraC-type tra 25.1 3.4E+02 0.0074 21.4 9.4 51 113-168 23-76 (155)
177 COG3355 Predicted transcriptio 24.8 65 0.0014 25.3 2.4 43 182-224 34-76 (126)
178 PLN02288 mannose-6-phosphate i 24.1 52 0.0011 30.8 2.0 21 137-157 252-272 (394)
179 PF13613 HTH_Tnp_4: Helix-turn 23.6 84 0.0018 20.2 2.4 23 191-213 20-42 (53)
180 COG2144 Selenophosphate synthe 23.0 54 0.0012 29.6 1.8 41 108-151 131-171 (324)
181 KOG0498 K+-channel ERG and rel 22.4 1.3E+02 0.0028 30.5 4.5 48 99-147 447-494 (727)
182 PF13518 HTH_28: Helix-turn-he 22.4 87 0.0019 19.3 2.3 28 191-218 13-40 (52)
183 TIGR03697 NtcA_cyano global ni 22.1 92 0.002 24.7 2.9 36 113-148 11-47 (193)
184 PF14545 DBB: Dof, BCAP, and B 22.1 4.2E+02 0.009 21.2 7.1 71 136-211 51-125 (142)
185 smart00351 PAX Paired Box doma 21.8 78 0.0017 24.3 2.3 32 190-221 33-64 (125)
186 PF12937 F-box-like: F-box-lik 21.6 1.1E+02 0.0024 18.8 2.6 21 190-210 3-24 (47)
187 PF09923 DUF2155: Uncharacteri 21.4 3.4E+02 0.0073 19.9 5.9 58 133-192 11-76 (90)
188 PHA00672 hypothetical protein 21.3 4.2E+02 0.0092 21.0 7.2 66 90-162 45-110 (152)
189 PF10313 DUF2415: Uncharacteri 21.3 1.3E+02 0.0029 19.0 2.9 30 103-132 2-33 (43)
190 PF01987 AIM24: Mitochondrial 21.0 1.6E+02 0.0035 24.4 4.3 43 115-158 131-173 (215)
191 PF12802 MarR_2: MarR family; 20.9 53 0.0012 21.2 1.1 32 191-222 22-53 (62)
192 PF12071 DUF3551: Protein of u 20.4 1.8E+02 0.0039 21.0 3.8 19 16-34 15-35 (82)
193 TIGR00738 rrf2_super rrf2 fami 20.3 1E+02 0.0022 23.3 2.7 33 190-222 25-57 (132)
194 COG2188 PhnF Transcriptional r 20.1 79 0.0017 26.9 2.2 33 191-223 31-64 (236)
195 PF07172 GRP: Glycine rich pro 20.1 71 0.0015 23.7 1.7 6 6-11 7-12 (95)
No 1
>PLN00212 glutelin; Provisional
Probab=99.96 E-value=3.3e-28 Score=227.35 Aligned_cols=155 Identities=17% Similarity=0.315 Sum_probs=136.8
Q ss_pred CcccCCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCC-CeEEEEEECCCC
Q 040384 66 GNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTD-NVFYSKVVTAGM 144 (224)
Q Consensus 66 ~~~~~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~-~~~~~~~l~~GD 144 (224)
.+++++.+|+++.+++.++|+|+++|+|+.+++|.||||.+||||++|+|++||++|+++++||+++ ++++..+|++||
T Consensus 322 ad~y~~~~G~it~v~~~~~P~L~~L~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~Gd 401 (493)
T PLN00212 322 ADTYNPRAGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQ 401 (493)
T ss_pred cCccCCCceEEEEechhhCccccccCeeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCC
Confidence 4567899999999999999999999999999999999999999999999999999999999999977 688999999999
Q ss_pred EEEecCCCeeEEEecCCccEEEEEEeeCCCCcceehh--hhhhcCCCCCCHHHHHhhcCCCHHHHHHHHhccCCCcceec
Q 040384 145 LFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVH--SSLFNTTPPIPNEVLTKTFLVGDEVINAIKAAITSAQLGHR 222 (224)
Q Consensus 145 v~vvP~G~~H~~~N~G~~~a~~~~~~~s~~pg~~~~~--~~lf~~~p~~p~evla~af~v~~~~v~~l~~~~~~~~~i~r 222 (224)
+|+||+|++|.... +++...++++..+.++-...++ .++|++ +|.+||++||+++.+++++||.++.+...+.+
T Consensus 402 vfVVPqg~~v~~~A-~~egfe~v~F~tna~~~~s~laG~~Sv~~a---lp~eVla~Af~is~eea~~lk~n~~~e~~~~~ 477 (493)
T PLN00212 402 LLIIPQHYAVLKKA-EREGCQYIAFKTNANAMVSHIAGKNSIFRA---LPVDVIANAYRISREEARRLKNNRGDELGAFT 477 (493)
T ss_pred EEEECCCCeEEEee-cCCceEEEEeecCCCccccccccHHHHHHh---CCHHHHHHHcCCCHHHHHHHHhcccCceeecC
Confidence 99999999998754 4666777776655554333332 678997 99999999999999999999999988888887
Q ss_pred CC
Q 040384 223 PK 224 (224)
Q Consensus 223 ~~ 224 (224)
|+
T Consensus 478 p~ 479 (493)
T PLN00212 478 PR 479 (493)
T ss_pred CC
Confidence 73
No 2
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.96 E-value=1.2e-27 Score=217.89 Aligned_cols=163 Identities=21% Similarity=0.319 Sum_probs=145.1
Q ss_pred CCCCCCCCCccCCCeeeeccCCCcccCCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCe
Q 040384 44 GFPCKPETEVTSDDFFFDLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGT 123 (224)
Q Consensus 44 g~~ck~~~~vt~~df~f~l~~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~ 123 (224)
..+-+.+..-.++.|+|.+....+ ....||+++.+++.+||+++ ++++++++++||+++++|||++++|+.||++|+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~p-~~~~gG~~~~~~~~~~p~~~--~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~ 276 (367)
T TIGR03404 200 QEAVTGPAGEVPGPFTYHLSEQKP-KQVPGGTVRIADSTNFPVSK--TIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQ 276 (367)
T ss_pred cccCcCCCCCCCccEEEEhhhCCc-eecCCceEEEEChhhccCcc--eEEEEEEEECCCCccCCeeCcCCCeEEEEEEEE
Confidence 344455666667779985554443 35678889999999999999 699999999999999999999999999999999
Q ss_pred EEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEeeCCCCcceehhhhhhcCCCCCCHHHHHhhcCCC
Q 040384 124 VLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTKTFLVG 203 (224)
Q Consensus 124 ~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~s~~pg~~~~~~~lf~~~p~~p~evla~af~v~ 203 (224)
+++++.+++++.+...+++||+++||+|..|+++|.|+++++++++|++..++.+.+++|+ +. +|++||+++|+++
T Consensus 277 ~~~~v~d~~g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~i~l~~~l-~~---~p~~vl~~~~~~~ 352 (367)
T TIGR03404 277 ARMTVFAAGGNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFADVSLNQWL-AL---TPPQLVAAHLNLD 352 (367)
T ss_pred EEEEEEecCCcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCCceeEHHHHH-hh---CCHHHHHHHhCcC
Confidence 9999998887777899999999999999999999999999999999999999999999887 54 9999999999999
Q ss_pred HHHHHHHHhc
Q 040384 204 DEVINAIKAA 213 (224)
Q Consensus 204 ~~~v~~l~~~ 213 (224)
++++++|++.
T Consensus 353 ~~~~~~l~~~ 362 (367)
T TIGR03404 353 DEVIDSLKKE 362 (367)
T ss_pred HHHHHhcccc
Confidence 9999999865
No 3
>PLN00212 glutelin; Provisional
Probab=99.94 E-value=3.5e-26 Score=213.79 Aligned_cols=149 Identities=15% Similarity=0.196 Sum_probs=128.9
Q ss_pred CCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCe-----EE--------
Q 040384 70 NAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNV-----FY-------- 136 (224)
Q Consensus 70 ~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~-----~~-------- 136 (224)
...|| +++.+..+.+.|+|+|+++.|++|+|+|+.+|||| ++++++||++|++.+|++.|++. .+
T Consensus 59 ~se~G-~~E~~~~~~~q~~caGv~~~R~~i~p~gL~lP~y~-na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~ 136 (493)
T PLN00212 59 RSEAG-VTEYFDEKNEQFQCTGVFVIRRVIEPQGLLLPRYS-NTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQ 136 (493)
T ss_pred cccCc-eeeecCCCChhhcccceEEEEEEecCCcccCcccc-CCCeEEEEEeCeEEEEEEeCCCcchhhhhccccccccc
Confidence 45566 77888899999999999999999999999999999 99999999999999999986531 11
Q ss_pred ------------EEEECCCCEEEecCCCeeEEEecCCccEEEEEEeeCCCCc--------ceehh---------------
Q 040384 137 ------------SKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPG--------TQFVH--------------- 181 (224)
Q Consensus 137 ------------~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~s~~pg--------~~~~~--------------- 181 (224)
.+.+++||++++|+|++||++|+|+++++++++++..++. .+.++
T Consensus 137 ~~~~~~~d~hqkv~~lr~GDViaiPaG~~hw~yN~Gd~~~v~v~~~d~~n~~Nqld~~~r~F~LaG~~~~~~~~~~~~~~ 216 (493)
T PLN00212 137 SQSQKFRDEHQKIHQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYDINNNANQLEPRQREFLLAGNNNRQQQVYGRSIE 216 (493)
T ss_pred ccccccccccccceEeccCCEEEECCCCeEEEEeCCCCcEEEEEEEeccccccccCCCcceeeccCCCcccccccccccc
Confidence 1599999999999999999999999999988888755432 33343
Q ss_pred ----hhhhcCCCCCCHHHHHhhcCCCHHHHHHHHhccCCCcceecC
Q 040384 182 ----SSLFNTTPPIPNEVLTKTFLVGDEVINAIKAAITSAQLGHRP 223 (224)
Q Consensus 182 ----~~lf~~~p~~p~evla~af~v~~~~v~~l~~~~~~~~~i~r~ 223 (224)
.++|++ |++++|++||+++.++++||+..++++|.|||-
T Consensus 217 ~~~~~nifsG---F~~e~La~Afnv~~e~~~klq~~~d~rG~IVrv 259 (493)
T PLN00212 217 QHSGQNIFSG---FSTELLSEALGINAQVAKRLQSQNDQRGEIIRV 259 (493)
T ss_pred ccccCchhhc---CCHHHHHHHHCCCHHHHHHHhccccCCccEEEE
Confidence 349997 999999999999999999999999899999874
No 4
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=99.94 E-value=5.9e-26 Score=181.46 Aligned_cols=136 Identities=30% Similarity=0.550 Sum_probs=114.1
Q ss_pred eeccCCCcccCCCCceEEEeecccCCCCccc-cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCC-----
Q 040384 60 FDLSEEGNLSNAFGRAVTEGNVHEFPGVNTQ-GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDN----- 133 (224)
Q Consensus 60 f~l~~~~~~~~~~g~~~~~~~~~~~P~l~~~-gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~----- 133 (224)
|++..+.+..+..+|+++.++..++|.+.++ ++++.+..|+||++.+|||| +|+|+.||++|+++++++.+++
T Consensus 1 fn~~~~~~~~~~~~G~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~~~ 79 (144)
T PF00190_consen 1 FNLREPRPRVSNEGGRIREADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQEEF 79 (144)
T ss_dssp EETCSSSEEEEETTEEEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSSSEE
T ss_pred CCCCCCCCcccCCCEEEEEEChhhCcceecccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecCCccccc
Confidence 3445555566778899999999999966554 56667777899999999999 9999999999999999999876
Q ss_pred eEEEEE--ECCCCEEEecCCCeeEEEecCCccEEEEEEeeCCCCcceehhhhhhcCCCCCCHHHHHhhcCCCHHHHH
Q 040384 134 VFYSKV--VTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTKTFLVGDEVIN 208 (224)
Q Consensus 134 ~~~~~~--l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~s~~pg~~~~~~~lf~~~p~~p~evla~af~v~~~~v~ 208 (224)
+....+ +++||++++|+|++||+.|.|+++...+.+|++.++..+ +|+||++++|++++++++
T Consensus 80 ~~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~~------------l~~~v~~~~F~~~~~~~~ 144 (144)
T PF00190_consen 80 RDFSQKVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPNQ------------LPPEVLAKAFFLSGEEVQ 144 (144)
T ss_dssp EEEEEEEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTGE------------SSHHHHHHHEESSHHHHB
T ss_pred eeeeceeeeecccceeeccceeEEEEcCCCCCCEEEEEEECCCCccc------------CCcHHHHHhcCCCcCcCC
Confidence 355566 999999999999999999999888888888888777664 789999999999999863
No 5
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.92 E-value=5.9e-24 Score=193.79 Aligned_cols=146 Identities=25% Similarity=0.349 Sum_probs=125.5
Q ss_pred CeeeeccCCCcccCCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEE
Q 040384 57 DFFFDLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFY 136 (224)
Q Consensus 57 df~f~l~~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~ 136 (224)
-|.|.+++.. -..||++++++..+||++++ +++.++++.||++++|||| ++.|++||++|++++++++++++.+
T Consensus 37 ~~~~~~~~~~---~~~gG~~~~~~~~~lP~l~~--ls~~~~~l~pG~~~~~HwH-~~~E~~yVl~G~~~v~~~d~~g~~~ 110 (367)
T TIGR03404 37 KWSFSDSHNR---LENGGWAREVTVRDLPISTA--IAGVNMRLEPGAIRELHWH-KEAEWAYVLYGSCRITAVDENGRNY 110 (367)
T ss_pred eeeeccccCc---cccCceEEEeChhhccCccc--ccceEEEEcCCCCCCcccC-CCceEEEEEeeEEEEEEEcCCCcEE
Confidence 3555665543 23688999999999999994 7999999999999999999 5689999999999999999888888
Q ss_pred EEEECCCCEEEecCCCeeEEEecCCccEEEEEEeeCCC---CcceehhhhhhcCCCCCCHHHHHhhcCCCHHHHHHHHhc
Q 040384 137 SKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQL---PGTQFVHSSLFNTTPPIPNEVLTKTFLVGDEVINAIKAA 213 (224)
Q Consensus 137 ~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~s~~---pg~~~~~~~lf~~~p~~p~evla~af~v~~~~v~~l~~~ 213 (224)
.+.|++||+++||+|.+|+++|.+ +.+.++.+|++.. +..+.+.+++ ++ +|++||+++|+++++++++|++.
T Consensus 111 ~~~L~~GD~~~fP~g~~H~~~n~~-~~~~~l~vf~~~~f~~~~~~~~~~~l-~~---~p~~Vla~~f~l~~~~~~~l~~~ 185 (367)
T TIGR03404 111 IDDVGAGDLWYFPPGIPHSLQGLD-EGCEFLLVFDDGNFSEDGTFLVTDWL-AH---TPKDVLAKNFGVPESAFDNLPLK 185 (367)
T ss_pred EeEECCCCEEEECCCCeEEEEECC-CCeEEEEEeCCcccCCcceeeHHHHH-Hh---CCHHHHHHHhCCCHHHHHhcccc
Confidence 889999999999999999999985 5577888887654 4466677764 76 99999999999999999999864
No 6
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=99.87 E-value=5.4e-21 Score=153.08 Aligned_cols=135 Identities=37% Similarity=0.657 Sum_probs=117.5
Q ss_pred cCCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCC-CeEEEEEECCCCEEE
Q 040384 69 SNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTD-NVFYSKVVTAGMLFL 147 (224)
Q Consensus 69 ~~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~-~~~~~~~l~~GDv~v 147 (224)
.+..||++..++..++|.+++.++.+.+++++||+..++|||+++.|++||++|++++.+.+++ ++.....+++||+++
T Consensus 7 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ 86 (146)
T smart00835 7 FSNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFV 86 (146)
T ss_pred ccCCCceEEEeCchhCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEE
Confidence 3567888999999999999999999999999999999999998889999999999999987653 355679999999999
Q ss_pred ecCCCeeEEEecCCccEEEEEEeeCCCCcce---ehhhhhhcCCCCCCHHHHHhhcCCCHHHH
Q 040384 148 IPRGLVHFQLNVGKENVLFFPSFNSQLPGTQ---FVHSSLFNTTPPIPNEVLTKTFLVGDEVI 207 (224)
Q Consensus 148 vP~G~~H~~~N~G~~~a~~~~~~~s~~pg~~---~~~~~lf~~~p~~p~evla~af~v~~~~v 207 (224)
+|+|..|++.|.++++++++ .+++++|..- ....++|++ +++++++++|+++++++
T Consensus 87 ip~g~~H~~~n~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 145 (146)
T smart00835 87 VPQGHPHFQVNSGDENLEFV-AFNTNDPNRRFFLAGRNSVLRG---LPPEVLAAAFGVSAEEV 145 (146)
T ss_pred ECCCCEEEEEcCCCCCEEEE-EEecCCCCceeEeecccchhhc---CCHHHHHHHhCcChHHc
Confidence 99999999999999999888 4666666542 222467886 99999999999999875
No 7
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=99.78 E-value=2.1e-18 Score=144.50 Aligned_cols=150 Identities=19% Similarity=0.315 Sum_probs=128.2
Q ss_pred cCCCeeeeccCCCcccCCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCc--eEEEEeCeEEEEEEeC
Q 040384 54 TSDDFFFDLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSE--SSIVIRGTVLVGIITT 131 (224)
Q Consensus 54 t~~df~f~l~~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~E--i~yVl~G~~~v~~v~~ 131 (224)
..+||+|.+..... ...|+.+.......+|+- +...+.+.||++...||||++.| |.||++|+++.-+.++
T Consensus 49 ~~~~~~yel~~~~~--~~~~g~L~~~~t~~~pGs-----~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~ 121 (209)
T COG2140 49 KEDDFVYELLESEP--GERGGDLRLDVTRIFPGS-----AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKP 121 (209)
T ss_pred CCCceEEEeecccc--cccCCeEEEEeeccCCCc-----cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEcC
Confidence 67889995433322 223888999999999987 55678999999999999999999 9999999999999999
Q ss_pred CCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEeeCCCCcceehhhhhhcCCCCCCHHHHHhhcCCCHHHHHHHH
Q 040384 132 DNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTKTFLVGDEVINAIK 211 (224)
Q Consensus 132 ~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~s~~pg~~~~~~~lf~~~p~~p~evla~af~v~~~~v~~l~ 211 (224)
+|+.....+++||+++||++..|+..|+|+++++++.++....+....+..++++ ++..+++..|+.+....+.++
T Consensus 122 ~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~~~~~y~~~~~~~~----~~~~~~~~~~~~~~~~~D~p~ 197 (209)
T COG2140 122 EGEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPADAGQDYDLIAWLGG----MPPVLVENGLNKNPKYVDVPR 197 (209)
T ss_pred CCcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeCCCCceeeeeehhcc----CCceeeccccccCcccccCcc
Confidence 9999999999999999999999999999999999999998888888888777755 788899999988877777665
Q ss_pred hcc
Q 040384 212 AAI 214 (224)
Q Consensus 212 ~~~ 214 (224)
-++
T Consensus 198 ~~~ 200 (209)
T COG2140 198 IKF 200 (209)
T ss_pred ccc
Confidence 443
No 8
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=99.44 E-value=7.7e-13 Score=92.13 Aligned_cols=70 Identities=31% Similarity=0.461 Sum_probs=63.1
Q ss_pred EEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEe
Q 040384 96 RVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSF 170 (224)
Q Consensus 96 rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~ 170 (224)
+++++||+..++|+|+...|++||++|++++.+ +++ ...+++||.+.+|+|..|...|.+++++.++.++
T Consensus 2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V~ 71 (71)
T PF07883_consen 2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV---DGE--RVELKPGDAIYIPPGVPHQVRNPGDEPARFLVVY 71 (71)
T ss_dssp EEEEETTEEEEEEEESSEEEEEEEEESEEEEEE---TTE--EEEEETTEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred EEEECCCCCCCCEECCCCCEEEEEEECCEEEEE---ccE--EeEccCCEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 578999999999999876699999999999984 355 7899999999999999999999999999988764
No 9
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.35 E-value=9.6e-12 Score=97.49 Aligned_cols=86 Identities=26% Similarity=0.374 Sum_probs=72.6
Q ss_pred ccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCC
Q 040384 82 HEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGK 161 (224)
Q Consensus 82 ~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~ 161 (224)
.-++...+..+++.++.++||+..+.|+||...+.+||++|++++++- ++ .+.+++||++++|+|..||..|.++
T Consensus 33 ~~~~~~~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~---g~--~~~l~~Gd~i~ip~g~~H~~~a~~~ 107 (131)
T COG1917 33 RVLPRNEGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE---GE--KKELKAGDVIIIPPGVVHGLKAVED 107 (131)
T ss_pred eeccCCCCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEec---CC--ceEecCCCEEEECCCCeeeeccCCC
Confidence 344545566789999999999999999998667999999999999973 33 6899999999999999999999998
Q ss_pred ccEEEEEEeeC
Q 040384 162 ENVLFFPSFNS 172 (224)
Q Consensus 162 ~~a~~~~~~~s 172 (224)
+....++++..
T Consensus 108 ~~~~~l~v~~~ 118 (131)
T COG1917 108 EPMVLLLVFPL 118 (131)
T ss_pred CceeEEEEeee
Confidence 87566666654
No 10
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=99.35 E-value=2.9e-11 Score=101.27 Aligned_cols=97 Identities=18% Similarity=0.260 Sum_probs=80.4
Q ss_pred EEEeecccCCCCccccEEEEEEEEeCCcc------cCceecCCC--CceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEE
Q 040384 76 VTEGNVHEFPGVNTQGISTNRVDLAVGGI------NPPHLHPRS--SESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFL 147 (224)
Q Consensus 76 ~~~~~~~~~P~l~~~gis~~rv~l~pgg~------~~pH~Hp~a--~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~v 147 (224)
+..+.. ..|.++..++.+....+.||.. .++|+|+.. .|+.||++|++.+.+.+.++......+++||+++
T Consensus 53 ~Y~v~~-~~~~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~ 131 (191)
T PRK04190 53 VYEVYA-IEPEETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVY 131 (191)
T ss_pred EEEEEE-ecCCCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEE
Confidence 444443 3445666689999999999996 667999855 4999999999999887666666678999999999
Q ss_pred ecCCCeeEEEecCCccEEEEEEeeCC
Q 040384 148 IPRGLVHFQLNVGKENVLFFPSFNSQ 173 (224)
Q Consensus 148 vP~G~~H~~~N~G~~~a~~~~~~~s~ 173 (224)
||+|..|...|.|++++++++++...
T Consensus 132 IPpg~~H~~iN~G~epl~fl~v~p~~ 157 (191)
T PRK04190 132 VPPYWAHRSVNTGDEPLVFLACYPAD 157 (191)
T ss_pred ECCCCcEEeEECCCCCEEEEEEEcCC
Confidence 99999999999999999999987643
No 11
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.31 E-value=2.9e-11 Score=94.85 Aligned_cols=81 Identities=26% Similarity=0.231 Sum_probs=71.9
Q ss_pred ccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEE
Q 040384 90 QGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPS 169 (224)
Q Consensus 90 ~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~ 169 (224)
...++.++.+.||+-..+|.|.+..|++||++|++.+.+ +++ ...+++||++++|+|..|+..|.|..++.++.+
T Consensus 34 ~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~---~~~--~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei 108 (127)
T COG0662 34 DRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTI---GGE--EVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEV 108 (127)
T ss_pred CcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEE---CCE--EEEecCCCEEEECCCCcEEEEcCCCcceEEEEE
Confidence 478999999999999999889889999999999999987 344 689999999999999999999999999999887
Q ss_pred eeCCCC
Q 040384 170 FNSQLP 175 (224)
Q Consensus 170 ~~s~~p 175 (224)
-.....
T Consensus 109 ~~p~~~ 114 (127)
T COG0662 109 QSPPYL 114 (127)
T ss_pred ecCCcC
Confidence 654443
No 12
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=99.27 E-value=7e-11 Score=92.71 Aligned_cols=82 Identities=18% Similarity=0.250 Sum_probs=69.4
Q ss_pred ccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEE
Q 040384 90 QGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPS 169 (224)
Q Consensus 90 ~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~ 169 (224)
.++++.+..++||+..+.|+|.. .|+.||++|++++..++ +++ .+.|++||.+++|++..|++.|. +++.++++
T Consensus 33 ~~~~~~~~~l~pG~~~~~h~h~~-~E~~yVL~G~~~~~~i~-~g~--~~~L~aGD~i~~~~~~~H~~~N~--e~~~~l~v 106 (125)
T PRK13290 33 MGFSFHETTIYAGTETHLHYKNH-LEAVYCIEGEGEVEDLA-TGE--VHPIRPGTMYALDKHDRHYLRAG--EDMRLVCV 106 (125)
T ss_pred CCEEEEEEEECCCCcccceeCCC-EEEEEEEeCEEEEEEcC-CCE--EEEeCCCeEEEECCCCcEEEEcC--CCEEEEEE
Confidence 46899999999999999999965 69999999999987321 244 68999999999999999999997 78999998
Q ss_pred eeCCCCcc
Q 040384 170 FNSQLPGT 177 (224)
Q Consensus 170 ~~s~~pg~ 177 (224)
++.+.+|.
T Consensus 107 ~tP~~~~~ 114 (125)
T PRK13290 107 FNPPLTGR 114 (125)
T ss_pred ECCCCCCc
Confidence 87555544
No 13
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.06 E-value=1.3e-09 Score=87.57 Aligned_cols=84 Identities=17% Similarity=0.179 Sum_probs=69.2
Q ss_pred cCCCCccccEEEEEEEEeCCcc-cCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCC--CeeEEEec
Q 040384 83 EFPGVNTQGISTNRVDLAVGGI-NPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRG--LVHFQLNV 159 (224)
Q Consensus 83 ~~P~l~~~gis~~rv~l~pgg~-~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G--~~H~~~N~ 159 (224)
.+-+|+ .+.+....++||+. ...|||....|++||++|++.+.+ ++. ...|++||++-||+| ..|.+.|.
T Consensus 35 ~~~Gl~--~fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~---d~~--e~~lrpGD~~gFpAG~~~aHhliN~ 107 (161)
T COG3837 35 DALGLK--RFGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLRE---DGG--ETRLRPGDSAGFPAGVGNAHHLINR 107 (161)
T ss_pred hhcChh--hcccceEEeCCCCccccccccccCceEEEEEcCceEEEE---CCe--eEEecCCceeeccCCCcceeEEeec
Confidence 445566 45666778899995 568999999999999999999875 333 589999999999999 89999999
Q ss_pred CCccEEEEEEeeCC
Q 040384 160 GKENVLFFPSFNSQ 173 (224)
Q Consensus 160 G~~~a~~~~~~~s~ 173 (224)
++..++++.+=+..
T Consensus 108 s~~~~~yL~vG~r~ 121 (161)
T COG3837 108 SDVILRYLEVGTRE 121 (161)
T ss_pred CCceEEEEEecccc
Confidence 99988888775543
No 14
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.03 E-value=2.4e-09 Score=100.89 Aligned_cols=76 Identities=24% Similarity=0.291 Sum_probs=69.8
Q ss_pred cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEe
Q 040384 91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSF 170 (224)
Q Consensus 91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~ 170 (224)
++.+.+++++||+..++|+|+...|.+||++|++++.+ +++ ...|++||.+++|+|..|.+.|.|++++.++.+.
T Consensus 375 ~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~---dg~--~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~ 449 (468)
T TIGR01479 375 RYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTI---GDE--TLLLTENESTYIPLGVIHRLENPGKIPLELIEVQ 449 (468)
T ss_pred CEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEE---CCE--EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEE
Confidence 68899999999999899999888999999999999986 455 6899999999999999999999999999998886
Q ss_pred e
Q 040384 171 N 171 (224)
Q Consensus 171 ~ 171 (224)
.
T Consensus 450 ~ 450 (468)
T TIGR01479 450 S 450 (468)
T ss_pred c
Confidence 5
No 15
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=98.99 E-value=6.2e-09 Score=84.23 Aligned_cols=76 Identities=26% Similarity=0.321 Sum_probs=69.0
Q ss_pred cccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEE
Q 040384 89 TQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFP 168 (224)
Q Consensus 89 ~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~ 168 (224)
+-+..+-++.+.||.....|+|....|..+|++|++.+.+ +++ .+.+++||.+.+|+|..|.+.|.|+.++.++.
T Consensus 60 ~~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~---~~~--~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~IE 134 (151)
T PF01050_consen 60 GEGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTL---DDE--EFTLKEGDSVYIPRGAKHRIENPGKTPLEIIE 134 (151)
T ss_pred cCCEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEE---CCE--EEEEcCCCEEEECCCCEEEEECCCCcCcEEEE
Confidence 3468899999999999999999999999999999999987 454 68999999999999999999999999998886
Q ss_pred E
Q 040384 169 S 169 (224)
Q Consensus 169 ~ 169 (224)
+
T Consensus 135 V 135 (151)
T PF01050_consen 135 V 135 (151)
T ss_pred E
Confidence 5
No 16
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=98.97 E-value=4.4e-09 Score=99.30 Aligned_cols=78 Identities=23% Similarity=0.260 Sum_probs=69.7
Q ss_pred cccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEE
Q 040384 89 TQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFP 168 (224)
Q Consensus 89 ~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~ 168 (224)
+.++.+.+++++||+....|+|....|..||++|++++.+ +++ ...|++||.+.+|+|..|.+.|.|+++++++.
T Consensus 382 g~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~i---dg~--~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~ 456 (478)
T PRK15460 382 GDRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTI---DGD--IKLLGENESIYIPLGATHCLENPGKIPLDLIE 456 (478)
T ss_pred CCcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEE---CCE--EEEecCCCEEEECCCCcEEEEcCCCCCEEEEE
Confidence 3468899999999998877888778899999999999987 455 78999999999999999999999999999988
Q ss_pred Eee
Q 040384 169 SFN 171 (224)
Q Consensus 169 ~~~ 171 (224)
+..
T Consensus 457 V~~ 459 (478)
T PRK15460 457 VRS 459 (478)
T ss_pred EEc
Confidence 764
No 17
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=98.96 E-value=8.8e-09 Score=85.41 Aligned_cols=76 Identities=16% Similarity=0.198 Sum_probs=63.7
Q ss_pred ccEEEEEEEEeCCcccC-ceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEE
Q 040384 90 QGISTNRVDLAVGGINP-PHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFP 168 (224)
Q Consensus 90 ~gis~~rv~l~pgg~~~-pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~ 168 (224)
..+.+....++||+... .|+| ...|++||++|++.+.+ +++ .+.|++||.+++|.+..|.+.|.|++++.++.
T Consensus 105 ~~~~~~~~~~~pg~~~~~~~~h-~~~E~~~Vl~G~~~~~~---~~~--~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~ 178 (185)
T PRK09943 105 RTLAMIFETYQPGTTTGERIKH-QGEEIGTVLEGEIVLTI---NGQ--DYHLVAGQSYAINTGIPHSFSNTSAGICRIIS 178 (185)
T ss_pred CeeEEEEEEccCCCCccccccc-CCcEEEEEEEeEEEEEE---CCE--EEEecCCCEEEEcCCCCeeeeCCCCCCeEEEE
Confidence 34667778899999654 5677 56899999999999987 344 68999999999999999999999999998887
Q ss_pred Eee
Q 040384 169 SFN 171 (224)
Q Consensus 169 ~~~ 171 (224)
+..
T Consensus 179 ~~~ 181 (185)
T PRK09943 179 AHT 181 (185)
T ss_pred EeC
Confidence 653
No 18
>PRK11171 hypothetical protein; Provisional
Probab=98.94 E-value=2.5e-08 Score=87.63 Aligned_cols=78 Identities=17% Similarity=0.193 Sum_probs=67.8
Q ss_pred cccEEEEEEEEeCCcccCceecC-CCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEE
Q 040384 89 TQGISTNRVDLAVGGINPPHLHP-RSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFF 167 (224)
Q Consensus 89 ~~gis~~rv~l~pgg~~~pH~Hp-~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~ 167 (224)
+.++.+.++.+.||+....|+|. ...|++||++|++++.+ +++ +..|++||.+.+|++..|.+.|.|++++.++
T Consensus 58 ~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~---~g~--~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l 132 (266)
T PRK11171 58 GATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTL---EGK--THALSEGGYAYLPPGSDWTLRNAGAEDARFH 132 (266)
T ss_pred CCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEE---CCE--EEEECCCCEEEECCCCCEEEEECCCCCEEEE
Confidence 45789999999999987777775 45799999999999986 354 6899999999999999999999999999988
Q ss_pred EEee
Q 040384 168 PSFN 171 (224)
Q Consensus 168 ~~~~ 171 (224)
.+..
T Consensus 133 ~v~~ 136 (266)
T PRK11171 133 WIRK 136 (266)
T ss_pred EEEc
Confidence 7753
No 19
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=98.87 E-value=1.8e-08 Score=88.24 Aligned_cols=74 Identities=15% Similarity=0.145 Sum_probs=63.8
Q ss_pred cEEEEEEEEeCCcccCc-eecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEE
Q 040384 91 GISTNRVDLAVGGINPP-HLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPS 169 (224)
Q Consensus 91 gis~~rv~l~pgg~~~p-H~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~ 169 (224)
++.+.+++++||+..+. |.|. -.|..||++|++.+.+ +++ ...+++||++.+|++..||.+|.|++++.++..
T Consensus 178 ~~~~~~~~~~PG~~~~~~~~H~-~eh~~yiL~G~G~~~~---~g~--~~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l~y 251 (260)
T TIGR03214 178 DMNVHILSFEPGASHPYIETHV-MEHGLYVLEGKGVYNL---DNN--WVPVEAGDYIWMGAYCPQACYAGGRGEFRYLLY 251 (260)
T ss_pred CcEEEEEEECCCcccCCccccc-ceeEEEEEeceEEEEE---CCE--EEEecCCCEEEECCCCCEEEEecCCCcEEEEEE
Confidence 67888899999999995 6664 5688899999999875 555 789999999999999999999999999887754
Q ss_pred e
Q 040384 170 F 170 (224)
Q Consensus 170 ~ 170 (224)
-
T Consensus 252 k 252 (260)
T TIGR03214 252 K 252 (260)
T ss_pred c
Confidence 3
No 20
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=98.82 E-value=3.6e-08 Score=76.01 Aligned_cols=84 Identities=24% Similarity=0.293 Sum_probs=72.5
Q ss_pred cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeE-EEEEECCCCEEEecCCCeeEEEecCCccEEEEEE
Q 040384 91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVF-YSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPS 169 (224)
Q Consensus 91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~-~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~ 169 (224)
++-+-.++++||+-.--|-|-+-...+||++|+....+. +++ +....++||+|+||+|..|--.|.+++++..+.+
T Consensus 45 ~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G---~rLE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~vIa 121 (142)
T COG4101 45 GICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYG---NRLEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAVIA 121 (142)
T ss_pred eeeEEEEeeCCCccccccccccccEEEEEEeceeeeeec---cceeeeEEecCCCeEEcCCCCCCcccccCCCCeEEEEE
Confidence 677888999999999999998877889999999999873 343 4578899999999999999999999999998888
Q ss_pred eeCCCCcc
Q 040384 170 FNSQLPGT 177 (224)
Q Consensus 170 ~~s~~pg~ 177 (224)
-+..++..
T Consensus 122 RsDp~~~E 129 (142)
T COG4101 122 RSDPNPQE 129 (142)
T ss_pred ccCCCCCc
Confidence 77666554
No 21
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=98.74 E-value=1.5e-07 Score=82.50 Aligned_cols=77 Identities=21% Similarity=0.165 Sum_probs=65.2
Q ss_pred ccEEEEEEEEeCCccc-CceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEE
Q 040384 90 QGISTNRVDLAVGGIN-PPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFP 168 (224)
Q Consensus 90 ~gis~~rv~l~pgg~~-~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~ 168 (224)
..+....++++||+-. .+|+|+...|++||++|++++.+ +++ ...|++||.+++|+|..|.+.|.+++++.++.
T Consensus 56 ~~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~---~g~--~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~l~ 130 (260)
T TIGR03214 56 ATFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTA---EGE--THELREGGYAYLPPGSKWTLANAQAEDARFFL 130 (260)
T ss_pred CcEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEE---CCE--EEEECCCCEEEECCCCCEEEEECCCCCEEEEE
Confidence 3688999999998754 46667666899999999999886 354 67999999999999999999999999999876
Q ss_pred Eee
Q 040384 169 SFN 171 (224)
Q Consensus 169 ~~~ 171 (224)
+-.
T Consensus 131 v~k 133 (260)
T TIGR03214 131 YKK 133 (260)
T ss_pred EEe
Confidence 653
No 22
>PRK11171 hypothetical protein; Provisional
Probab=98.71 E-value=3.6e-07 Score=80.27 Aligned_cols=75 Identities=16% Similarity=0.100 Sum_probs=65.3
Q ss_pred cEEEEEEEEeCCcccCce-ecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEE
Q 040384 91 GISTNRVDLAVGGINPPH-LHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPS 169 (224)
Q Consensus 91 gis~~rv~l~pgg~~~pH-~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~ 169 (224)
++.+.+++|+||+..+.| +| ...|.+||++|++++.+ +++ .+.|++||++.+|.+..|++.|.|+++++++..
T Consensus 183 ~~~~~~~~l~PG~~~~~~~~~-~~ee~i~Vl~G~~~~~~---~~~--~~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl~~ 256 (266)
T PRK11171 183 DMHVNIVTFEPGASIPFVETH-VMEHGLYVLEGKGVYRL---NND--WVEVEAGDFIWMRAYCPQACYAGGPGPFRYLLY 256 (266)
T ss_pred CcEEEEEEECCCCEEccCcCC-CceEEEEEEeCEEEEEE---CCE--EEEeCCCCEEEECCCCCEEEECCCCCcEEEEEE
Confidence 468899999999999884 66 56899999999999986 455 789999999999999999999999999988755
Q ss_pred ee
Q 040384 170 FN 171 (224)
Q Consensus 170 ~~ 171 (224)
-+
T Consensus 257 k~ 258 (266)
T PRK11171 257 KD 258 (266)
T ss_pred cc
Confidence 43
No 23
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=98.70 E-value=2.2e-07 Score=77.32 Aligned_cols=86 Identities=20% Similarity=0.308 Sum_probs=57.9
Q ss_pred CccccEEEEEEEEeCCcc------cCceecCC------CCceEEEEeCeEEEEEEeCCC----eEEEEEECCCCEEEecC
Q 040384 87 VNTQGISTNRVDLAVGGI------NPPHLHPR------SSESSIVIRGTVLVGIITTDN----VFYSKVVTAGMLFLIPR 150 (224)
Q Consensus 87 l~~~gis~~rv~l~pgg~------~~pH~Hp~------a~Ei~yVl~G~~~v~~v~~~~----~~~~~~l~~GDv~vvP~ 150 (224)
++..++......+.||-+ ..-|+|+. -.|+.+|++|++.+-+-+.++ +.+...+++||+++||+
T Consensus 45 ~~~~~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp 124 (182)
T PF06560_consen 45 LQKRNLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPP 124 (182)
T ss_dssp -----EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-T
T ss_pred ceeeeEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECC
Confidence 445568888888888754 35699998 789999999999999988877 77789999999999999
Q ss_pred CCeeEEEecCCccEEEEEEeeC
Q 040384 151 GLVHFQLNVGKENVLFFPSFNS 172 (224)
Q Consensus 151 G~~H~~~N~G~~~a~~~~~~~s 172 (224)
++.|...|+|++++++.+...+
T Consensus 125 ~yaH~tIN~g~~~L~~~~~~~~ 146 (182)
T PF06560_consen 125 GYAHRTINTGDEPLVFAAWVPR 146 (182)
T ss_dssp T-EEEEEE-SSS-EEEEEEEET
T ss_pred CceEEEEECCCCcEEEEEEEec
Confidence 9999999999999988877653
No 24
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=98.66 E-value=4e-07 Score=72.86 Aligned_cols=92 Identities=15% Similarity=0.140 Sum_probs=58.2
Q ss_pred cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCC----CeEEEEEECCCCEEEecCCCeeEEEecC-CccEE
Q 040384 91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTD----NVFYSKVVTAGMLFLIPRGLVHFQLNVG-KENVL 165 (224)
Q Consensus 91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~----~~~~~~~l~~GDv~vvP~G~~H~~~N~G-~~~a~ 165 (224)
.+.+-.-++.||.-.|+|-| ...|+++|++|+++..+.... |+.....+-+++.|.||.+..|-..|++ .+++.
T Consensus 43 evEVwlQTfAPG~~TPiHRH-sCEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDlq 121 (167)
T PF02041_consen 43 EVEVWLQTFAPGSATPIHRH-SCEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDLQ 121 (167)
T ss_dssp SEEEEEEEE-TT-B--EEEE-SS-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---SSS-EE
T ss_pred eeeEEeeeecCCCCCCCccc-cccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecCCCCcceE
Confidence 46888899999999999999 578999999999999887654 5677899999999999999999999999 48888
Q ss_pred EEEEeeCCCCcceehhhh
Q 040384 166 FFPSFNSQLPGTQFVHSS 183 (224)
Q Consensus 166 ~~~~~~s~~pg~~~~~~~ 183 (224)
++++++..--..+...+|
T Consensus 122 vlViiSrpPvkvf~y~dw 139 (167)
T PF02041_consen 122 VLVIISRPPVKVFIYDDW 139 (167)
T ss_dssp EEEEEESSS--EEEESST
T ss_pred EEEEecCCCeEEEEeccc
Confidence 887776443334444444
No 25
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=98.48 E-value=9.2e-07 Score=73.04 Aligned_cols=58 Identities=17% Similarity=0.240 Sum_probs=50.0
Q ss_pred eCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEec
Q 040384 100 AVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNV 159 (224)
Q Consensus 100 ~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~ 159 (224)
.||.-...|+|+ ..|++|+++|++++.+++ +|+.....|++||++++|+|..|.....
T Consensus 42 Gpn~r~d~H~~~-tdE~FyqleG~~~l~v~d-~g~~~~v~L~eGd~fllP~gvpHsP~r~ 99 (177)
T PRK13264 42 GPNARTDFHYDP-GEEFFYQLEGDMYLKVQE-DGKRRDVPIREGEMFLLPPHVPHSPQRE 99 (177)
T ss_pred cCCcccccccCC-CceEEEEECCeEEEEEEc-CCceeeEEECCCCEEEeCCCCCcCCccC
Confidence 566667789995 699999999999999987 4555679999999999999999998764
No 26
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=98.48 E-value=1.1e-06 Score=71.51 Aligned_cols=60 Identities=15% Similarity=0.189 Sum_probs=48.5
Q ss_pred eCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCC
Q 040384 100 AVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGK 161 (224)
Q Consensus 100 ~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~ 161 (224)
.||.-...|.|+ ..|++|+++|++.+.+.+. |+.....|++||++++|+|..|.....++
T Consensus 36 Gpn~R~d~H~~~-tdE~FyqleG~~~l~v~d~-g~~~~v~L~eGd~flvP~gvpHsP~r~~~ 95 (159)
T TIGR03037 36 GPNARTDFHDDP-GEEFFYQLKGEMYLKVTEE-GKREDVPIREGDIFLLPPHVPHSPQRPAG 95 (159)
T ss_pred CCCCCcccccCC-CceEEEEEcceEEEEEEcC-CcEEEEEECCCCEEEeCCCCCcccccCCC
Confidence 344445567775 7999999999999998764 55567999999999999999999876544
No 27
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=98.43 E-value=2.8e-06 Score=62.34 Aligned_cols=72 Identities=33% Similarity=0.448 Sum_probs=54.4
Q ss_pred cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEE
Q 040384 91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFF 167 (224)
Q Consensus 91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~ 167 (224)
.++...++|+||+.-++-.--+..-++||++|.+++.+ +++ +..+.+||+|.||+|-.-.+.|.+++++.++
T Consensus 11 ~fa~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti---~~~--~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~Lf 82 (85)
T PF11699_consen 11 FFASGMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTI---HET--SFVVTKGGSFQVPRGNYYSIKNIGNEEAKLF 82 (85)
T ss_dssp S-EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEE---TTE--EEEEETT-EEEE-TT-EEEEEE-SSS-EEEE
T ss_pred CceeEEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEE---cCc--EEEEeCCCEEEECCCCEEEEEECCCCcEEEE
Confidence 56788999999999877444367788999999999998 344 6899999999999999999999999998865
No 28
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=98.34 E-value=2.3e-06 Score=65.04 Aligned_cols=62 Identities=29% Similarity=0.304 Sum_probs=44.0
Q ss_pred CCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEE
Q 040384 101 VGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFP 168 (224)
Q Consensus 101 pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~ 168 (224)
++-..++|+|+ .-|+.||++|++++.+ +++ ...+++||++++|+|..|.....++++...+.
T Consensus 12 ~~~~~~~h~h~-~~~i~~v~~G~~~~~~---~~~--~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~ 73 (136)
T PF02311_consen 12 PNFEFPPHWHD-FYEIIYVLSGEGTLHI---DGQ--EYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYW 73 (136)
T ss_dssp TT-SEEEETT--SEEEEEEEEE-EEEEE---TTE--EEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEE
T ss_pred CCCccCCEECC-CEEEEEEeCCEEEEEE---CCE--EEEEECCEEEEecCCccEEEecCCCCCEEEEE
Confidence 45567899995 6899999999999876 455 68999999999999999999887765555443
No 29
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=98.30 E-value=7.1e-06 Score=66.83 Aligned_cols=67 Identities=18% Similarity=0.257 Sum_probs=48.7
Q ss_pred ccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEee
Q 040384 104 INPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFN 171 (224)
Q Consensus 104 ~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~ 171 (224)
....|.|. ..|+-|+++|++...+.+.+++.....+++||++++|+|+.||+.-..+....++=.|.
T Consensus 84 f~~EH~H~-deEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF~ 150 (157)
T PF03079_consen 84 FFEEHTHE-DEEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLFK 150 (157)
T ss_dssp HCS-EEES-S-EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEES
T ss_pred hheeEecC-hheEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEeec
Confidence 44689995 58999999999999999887776678999999999999999999644344455554554
No 30
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=98.29 E-value=2e-06 Score=63.43 Aligned_cols=66 Identities=27% Similarity=0.387 Sum_probs=51.4
Q ss_pred cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEE
Q 040384 91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFP 168 (224)
Q Consensus 91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~ 168 (224)
|..+..+.++||+..+.|+|+ ..|.+||++|++.. .+ .++.+||.+..|.|..|.... ++.+.++.
T Consensus 23 g~~~~L~r~~pG~~~p~H~H~-g~ee~~VLeG~~~d----~~-----~~~~~G~~~~~p~g~~h~~~s--~~gc~~~v 88 (91)
T PF12973_consen 23 GERVSLLRLEPGASLPRHRHP-GGEEILVLEGELSD----GD-----GRYGAGDWLRLPPGSSHTPRS--DEGCLILV 88 (91)
T ss_dssp TEEEEEEEE-TTEEEEEEEES-S-EEEEEEECEEEE----TT-----CEEETTEEEEE-TTEEEEEEE--SSCEEEEE
T ss_pred cCEEEEEEECCCCCcCccCCC-CcEEEEEEEEEEEE----CC-----ccCCCCeEEEeCCCCccccCc--CCCEEEEE
Confidence 678889999999999999995 57889999999763 23 356999999999999999874 45566553
No 31
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=98.20 E-value=7e-06 Score=74.35 Aligned_cols=76 Identities=16% Similarity=0.283 Sum_probs=64.8
Q ss_pred cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEe
Q 040384 91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSF 170 (224)
Q Consensus 91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~ 170 (224)
.+.+..-.|.||...++|-| .+..+.||++|++....|+ |+ +..+++||+|++|.+..|...|.|+++++.+.++
T Consensus 80 tl~a~~q~l~pGe~~~~HRh-t~sAl~~vveG~G~~t~V~--g~--~~~~~~gD~~~tP~w~wH~H~n~~d~~~~wld~l 154 (335)
T TIGR02272 80 SLYAGLQLILPGEVAPSHRH-TQSALRFIVEGKGAFTAVD--GE--RTTMHPGDFIITPSWTWHDHGNPGDEPMIWLDGL 154 (335)
T ss_pred hHHhhhEEeCCCCCCCcccc-ccceEEEEEEcCceEEEEC--CE--EEeeeCCCEEEeCCCeeEecccCCCCcEEEEecC
Confidence 45666778999999999999 5789999999999655554 55 6899999999999999999999999998876666
Q ss_pred e
Q 040384 171 N 171 (224)
Q Consensus 171 ~ 171 (224)
|
T Consensus 155 D 155 (335)
T TIGR02272 155 D 155 (335)
T ss_pred C
Confidence 5
No 32
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=98.19 E-value=3.8e-06 Score=71.71 Aligned_cols=75 Identities=17% Similarity=0.233 Sum_probs=64.1
Q ss_pred cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEe
Q 040384 91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSF 170 (224)
Q Consensus 91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~ 170 (224)
+..+..+.++||+.++.|.| ...|+.+|++|+.. +.+ ..+.+||++..|.|..|...+.++++++++++.
T Consensus 126 ~~~v~Ll~i~pG~~~p~H~H-~G~E~tlVLeG~f~----de~-----g~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v~ 195 (215)
T TIGR02451 126 NARVRLLYIEAGQSIPQHTH-KGFELTLVLHGAFS----DET-----GVYGVGDFEEADGSVQHQPRTVSGGDCLCLAVL 195 (215)
T ss_pred CcEEEEEEECCCCccCCCcC-CCcEEEEEEEEEEE----cCC-----CccCCCeEEECCCCCCcCcccCCCCCeEEEEEe
Confidence 35778899999999999999 56899999999953 322 478999999999999999999988889999998
Q ss_pred eCCCC
Q 040384 171 NSQLP 175 (224)
Q Consensus 171 ~s~~p 175 (224)
+.+.-
T Consensus 196 dapl~ 200 (215)
T TIGR02451 196 DAPLR 200 (215)
T ss_pred cCCcc
Confidence 76543
No 33
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=98.15 E-value=9.2e-06 Score=72.34 Aligned_cols=61 Identities=18% Similarity=0.102 Sum_probs=49.9
Q ss_pred EEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCC
Q 040384 95 NRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGK 161 (224)
Q Consensus 95 ~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~ 161 (224)
....-.|..|.++||| +.-|+.|+++|++.+.+ +|+ ...+++||+++++.|.+|.....++
T Consensus 29 ~~~~~~~~~m~~~HwH-~e~Ei~yv~~G~~~~~i---~g~--~~~l~~Gd~ili~s~~~H~~~~~~~ 89 (302)
T PRK10371 29 EIEFRPPHIMPTSHWH-GQVEVNVPFDGDVEYLI---NNE--KVQINQGHITLFWACTPHQLTDPGN 89 (302)
T ss_pred EEEeeCCCCCCCCCcc-ccEEEEEecCCcEEEEE---CCE--EEEEcCCcEEEEecCCcccccccCC
Confidence 3345667788999999 56899999999998775 455 6899999999999999998765443
No 34
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.15 E-value=1.7e-05 Score=64.80 Aligned_cols=71 Identities=21% Similarity=0.315 Sum_probs=57.5
Q ss_pred CceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEeeCCCCcce
Q 040384 106 PPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQ 178 (224)
Q Consensus 106 ~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~s~~pg~~ 178 (224)
.-|.| ...|+-|++.|++...+..++|+.+.....+||.+.+|+|.-||+--..+....++=.|. ..+|-+
T Consensus 89 ~EH~H-~d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF~-~~~gWV 159 (181)
T COG1791 89 QEHLH-TDDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLFT-EPEGWV 159 (181)
T ss_pred HHhcc-CCceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEEee-CCCCce
Confidence 46999 568999999999999999999999999999999999999999999644444455555554 444543
No 35
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=98.14 E-value=2.1e-05 Score=67.41 Aligned_cols=69 Identities=16% Similarity=0.187 Sum_probs=50.4
Q ss_pred cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEE
Q 040384 91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPS 169 (224)
Q Consensus 91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~ 169 (224)
.|++....++. +. -+||-+..|+.||++|++++.+ +|+ ++.+++||++++|+|..|.+.+.+ .+.++.+
T Consensus 156 ~m~aGf~~~~~-~s--f~wtl~~dEi~YVLEGe~~l~I---dG~--t~~l~pGDvlfIPkGs~~hf~tp~--~aRflyV 224 (233)
T PRK15457 156 SMAAGFMQWEN-AF--FPWTLNYDEIDMVLEGELHVRH---EGE--TMIAKAGDVMFIPKGSSIEFGTPS--SVRFLYV 224 (233)
T ss_pred ceeeEEEEEec-Cc--cceeccceEEEEEEEeEEEEEE---CCE--EEEeCCCcEEEECCCCeEEecCCC--CeeEEEE
Confidence 45555666665 22 3477788999999999999987 465 789999999999999994444443 4444433
No 36
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=98.12 E-value=7.8e-06 Score=64.67 Aligned_cols=67 Identities=27% Similarity=0.373 Sum_probs=53.7
Q ss_pred CCcccC-ceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEe
Q 040384 101 VGGINP-PHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSF 170 (224)
Q Consensus 101 pgg~~~-pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~ 170 (224)
.|++.. -|||.+++|++.|++|+..+.+..++|+ ...+++||++++|.|.-|.-. ..+.+..++..+
T Consensus 51 ~g~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~G~--el~v~~GDvlliPAGvGH~rl-~sS~DF~VvGaY 118 (163)
T COG4297 51 RGGVFNYHHYHSGAHEVLGVLRGQAGLQIGGADGQ--ELEVGEGDVLLIPAGVGHCRL-HSSADFQVVGAY 118 (163)
T ss_pred cccccccccccCCcceEEEEecceeEEEecCCCCc--eeeecCCCEEEEecCcccccc-cCCCCeEEEccc
Confidence 345444 5999999999999999999999887776 678999999999999999863 344455555544
No 37
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=98.02 E-value=4.2e-05 Score=66.62 Aligned_cols=52 Identities=21% Similarity=0.308 Sum_probs=43.6
Q ss_pred CcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEec
Q 040384 102 GGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNV 159 (224)
Q Consensus 102 gg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~ 159 (224)
+...++||| +..|++||++|++++.+ +++ ...+++||++++|+|..|.....
T Consensus 33 ~~~~~~H~H-~~~ei~~v~~G~~~~~i---~~~--~~~l~~g~l~~i~p~~~H~~~~~ 84 (278)
T PRK10296 33 ESVSGLHQH-DYYEFTLVLTGRYYQEI---NGK--RVLLERGDFVFIPLGSHHQSFYE 84 (278)
T ss_pred hcCCCCccc-ccEEEEEEEeceEEEEE---CCE--EEEECCCcEEEeCCCCccceeee
Confidence 335689999 67899999999999876 455 57999999999999999976443
No 38
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=97.99 E-value=1.1e-05 Score=70.36 Aligned_cols=73 Identities=32% Similarity=0.494 Sum_probs=47.3
Q ss_pred ccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEE
Q 040384 90 QGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFF 167 (224)
Q Consensus 90 ~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~ 167 (224)
-|.+..|+.+.+|-..|||+| ++++-.||++|.+..+ +.+....-|.+|..+..|+|..|+....+++.+.++
T Consensus 34 ~g~~~~~vkf~~g~~~pph~H-~~~~~~~Vi~G~~~~~----~~~a~~~~l~~Gsy~~~PaG~~h~~~~~~~~~~~~~ 106 (251)
T PF14499_consen 34 DGPSGMRVKFPAGFSSPPHIH-NADYRGTVISGELHNG----DPKAAAMWLPAGSYWFQPAGEPHITAAEGETNLLFI 106 (251)
T ss_dssp TS-EEEEEEE-TT-EE--BEE-SS-EEEEEEESEEEET----TEE-----E-TTEEEEE-TT-EEEETTS-EE-EEEE
T ss_pred CCcceEEEEcCCCccCCCcce-eeeEEEEEEEeEEEcC----CCcccceecCCCceEeccCCCceeeeccCccEEEEE
Confidence 388999999999999999999 6899999999987654 334445679999999999999999876666555443
No 39
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=97.97 E-value=0.00012 Score=57.09 Aligned_cols=84 Identities=17% Similarity=0.235 Sum_probs=72.7
Q ss_pred ccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEE
Q 040384 88 NTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFF 167 (224)
Q Consensus 88 ~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~ 167 (224)
.++|+|+-.-.+.+|.-...||- +.-|-+|+++|++++.-.+ +|+ .+.+++|.+.+..+--.|+..... ++.++
T Consensus 31 DgmGFS~h~T~i~aGtet~~~Yk-nHlEAvyci~G~Gev~~~~-~G~--~~~i~pGt~YaLd~hD~H~lra~~--dm~~v 104 (126)
T PF06339_consen 31 DGMGFSFHETTIYAGTETHIHYK-NHLEAVYCIEGEGEVEDLD-TGE--VHPIKPGTMYALDKHDRHYLRAKT--DMRLV 104 (126)
T ss_pred CCCCEEEEEEEEeCCCeeEEEec-CceEEEEEEeceEEEEEcc-CCc--EEEcCCCeEEecCCCccEEEEecC--CEEEE
Confidence 46799999999999999999998 6789999999999998765 455 689999999999999999997543 89999
Q ss_pred EEeeCCCCcc
Q 040384 168 PSFNSQLPGT 177 (224)
Q Consensus 168 ~~~~s~~pg~ 177 (224)
++||.+--|.
T Consensus 105 CVFnPpltG~ 114 (126)
T PF06339_consen 105 CVFNPPLTGR 114 (126)
T ss_pred EEcCCCCcCc
Confidence 9998765444
No 40
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.93 E-value=1.8e-05 Score=70.08 Aligned_cols=115 Identities=19% Similarity=0.278 Sum_probs=85.3
Q ss_pred CccCCCeee-ecc----CCCcccCCCCceEEEeecccCCCCcccc-----EEEEEEEEeCCcccCceecCCCCceEEEEe
Q 040384 52 EVTSDDFFF-DLS----EEGNLSNAFGRAVTEGNVHEFPGVNTQG-----ISTNRVDLAVGGINPPHLHPRSSESSIVIR 121 (224)
Q Consensus 52 ~vt~~df~f-~l~----~~~~~~~~~g~~~~~~~~~~~P~l~~~g-----is~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~ 121 (224)
...+.-+.| .++ ..+......++ ++.+-....|+|++.. +-+..--|.||-+.|.|-| +.+.+-+|++
T Consensus 43 ~~vp~lW~~~~ir~ll~~sgeli~~~~a-~RRvi~L~NP~l~g~ssiT~TLyAglQlilPGEvApsHrH-sqsAlRFvve 120 (351)
T COG3435 43 DCVPALWKYEEIRPLLLRSGELISAREA-VRRVIYLENPGLRGRSSITPTLYAGLQLILPGEVAPSHRH-NQSALRFVVE 120 (351)
T ss_pred ccccccccHHHHHHHHHHhhhccCcccc-eeEEEEecCCCCCCcccccHHHHhhhheecCcccCCcccc-cccceEEEEe
Confidence 334445556 322 23443333333 6677778889888763 1233456789999999999 4578999999
Q ss_pred CeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEeeC
Q 040384 122 GTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNS 172 (224)
Q Consensus 122 G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~s 172 (224)
|++-..+|+ |. ...+++||+++.|++..|..-|.|++|++++-.++.
T Consensus 121 G~Ga~T~Vd--Ge--r~~M~~GDfilTP~w~wHdHgn~g~eP~iWlDgLDi 167 (351)
T COG3435 121 GKGAYTVVD--GE--RTPMEAGDFILTPAWTWHDHGNEGTEPCIWLDGLDI 167 (351)
T ss_pred ccceeEeec--Cc--eeeccCCCEEEccCceeccCCCCCCCceEEEcccch
Confidence 999888886 43 579999999999999999999999999999876653
No 41
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=97.93 E-value=0.00025 Score=56.01 Aligned_cols=93 Identities=14% Similarity=0.057 Sum_probs=53.1
Q ss_pred CCceEEEeecccCCCCccccEEEEEEE-EeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCC-CEEEec
Q 040384 72 FGRAVTEGNVHEFPGVNTQGISTNRVD-LAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAG-MLFLIP 149 (224)
Q Consensus 72 ~g~~~~~~~~~~~P~l~~~gis~~rv~-l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~G-Dv~vvP 149 (224)
..|.++.+...+...+. --.+..+. .++|..+..|+|...+|+++|++|+.++.+-+.. +.....|..- +.+.+|
T Consensus 14 ~RG~L~~~e~~~~ipf~--i~rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~-~~~~~~L~~~~~~L~Ip 90 (131)
T PF05523_consen 14 ERGSLSVIERFDDIPFE--IKRVYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGR-EEEEFILDEPNKGLYIP 90 (131)
T ss_dssp TTEEEEEEETTTSSSS-----EEEEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-SS--EEEEEE--TTEEEEE-
T ss_pred CCCcEEEEeccCCCCCC--ccEEEEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecCC-CcEEEEECCCCeEEEEC
Confidence 35667777766433333 12444443 3445458999999999999999999999875533 3356777555 589999
Q ss_pred CCCeeEEEecCCccEEEEE
Q 040384 150 RGLVHFQLNVGKENVLFFP 168 (224)
Q Consensus 150 ~G~~H~~~N~G~~~a~~~~ 168 (224)
+|.+|.+.|.+++ +++++
T Consensus 91 pg~w~~~~~~s~~-svlLv 108 (131)
T PF05523_consen 91 PGVWHGIKNFSED-SVLLV 108 (131)
T ss_dssp TT-EEEEE---TT--EEEE
T ss_pred CchhhHhhccCCC-cEEEE
Confidence 9999999999876 66554
No 42
>PRK13501 transcriptional activator RhaR; Provisional
Probab=97.92 E-value=3.7e-05 Score=67.57 Aligned_cols=55 Identities=25% Similarity=0.204 Sum_probs=45.7
Q ss_pred CCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCC
Q 040384 101 VGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGK 161 (224)
Q Consensus 101 pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~ 161 (224)
+..-.++||| +..|++||++|++++.+ +++ ...+++||++++|+|..|.+...++
T Consensus 27 ~~~~~~~H~H-~~~ei~~i~~G~~~~~i---~~~--~~~l~~g~~~~I~p~~~H~~~~~~~ 81 (290)
T PRK13501 27 PQETFVEHTH-QFCEIVIVWRGNGLHVL---NDH--PYRITCGDVFYIQAADHHSYESVHD 81 (290)
T ss_pred CCCCCccccc-cceeEEEEecCceEEEE---CCe--eeeecCCeEEEEcCCCcccccccCC
Confidence 3344679999 57899999999999886 454 6899999999999999999875443
No 43
>PRK13500 transcriptional activator RhaR; Provisional
Probab=97.89 E-value=5.2e-05 Score=67.67 Aligned_cols=55 Identities=27% Similarity=0.253 Sum_probs=45.6
Q ss_pred CCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCC
Q 040384 101 VGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGK 161 (224)
Q Consensus 101 pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~ 161 (224)
|....++||| +..|++||++|++...+ +++ ...+++||+++||+|..|......+
T Consensus 57 ~~~~~~~H~H-~~~el~~v~~G~g~~~v---~~~--~~~l~~Gdl~~I~~~~~H~~~~~~~ 111 (312)
T PRK13500 57 PQDVFAEHTH-DFCELVIVWRGNGLHVL---NDR--PYRITRGDLFYIHADDKHSYASVND 111 (312)
T ss_pred CCCCCCcccc-ceEEEEEEEcCeEEEEE---CCE--EEeecCCeEEEECCCCeecccccCC
Confidence 3344689999 57899999999999876 454 6899999999999999999875443
No 44
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=97.81 E-value=6.3e-05 Score=65.57 Aligned_cols=57 Identities=21% Similarity=0.275 Sum_probs=46.3
Q ss_pred CcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCcc
Q 040384 102 GGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKEN 163 (224)
Q Consensus 102 gg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~ 163 (224)
+...++|||.+.-|++|+++|++.+.+ +++ ...+++||++++|+|..|.+...++..
T Consensus 33 ~~~~~~H~H~~~~~l~~~~~G~~~~~~---~~~--~~~l~~g~~~ii~~~~~H~~~~~~~~~ 89 (287)
T TIGR02297 33 GRNMPVHFHDRYYQLHYLTEGSIALQL---DEH--EYSEYAPCFFLTPPSVPHGFVTDLDAD 89 (287)
T ss_pred CCCCCCcccccceeEEEEeeCceEEEE---CCE--EEEecCCeEEEeCCCCccccccCCCcc
Confidence 345789999546799999999998776 454 689999999999999999987654433
No 45
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=97.78 E-value=0.00012 Score=52.14 Aligned_cols=59 Identities=22% Similarity=0.254 Sum_probs=44.3
Q ss_pred EEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEE
Q 040384 92 ISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQL 157 (224)
Q Consensus 92 is~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~ 157 (224)
+++......||.. ..++. ..|++||++|++++.. .+|+ +.++++||++++|+|..-.+.
T Consensus 7 ~~~g~w~~~pg~~-~~~~~--~~E~~~vleG~v~it~--~~G~--~~~~~aGD~~~~p~G~~~~w~ 65 (74)
T PF05899_consen 7 FSAGVWECTPGKF-PWPYP--EDEFFYVLEGEVTITD--EDGE--TVTFKAGDAFFLPKGWTGTWE 65 (74)
T ss_dssp EEEEEEEEECEEE-EEEES--SEEEEEEEEEEEEEEE--TTTE--EEEEETTEEEEE-TTEEEEEE
T ss_pred EEEEEEEECCcee-EeeCC--CCEEEEEEEeEEEEEE--CCCC--EEEEcCCcEEEECCCCEEEEE
Confidence 4666677788653 34444 4899999999998874 4565 699999999999999876654
No 46
>PRK13503 transcriptional activator RhaS; Provisional
Probab=97.76 E-value=6.4e-05 Score=65.15 Aligned_cols=54 Identities=19% Similarity=0.185 Sum_probs=44.8
Q ss_pred CCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecC
Q 040384 101 VGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVG 160 (224)
Q Consensus 101 pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G 160 (224)
+....++||| +..|++||++|++++.+ +++ ...+++||++++|+|..|.+....
T Consensus 24 ~~~~~~~H~H-~~~ei~~v~~G~~~~~i---~~~--~~~l~~g~~~~i~~~~~h~~~~~~ 77 (278)
T PRK13503 24 PQAAFPEHHH-DFHEIVIVEHGTGIHVF---NGQ--PYTLSGGTVCFVRDHDRHLYEHTD 77 (278)
T ss_pred cccccccccc-CceeEEEEecCceeeEe---cCC--cccccCCcEEEECCCccchhhhcc
Confidence 4455789999 67899999999999887 344 689999999999999999876543
No 47
>PRK13502 transcriptional activator RhaR; Provisional
Probab=97.72 E-value=0.00011 Score=63.98 Aligned_cols=55 Identities=25% Similarity=0.235 Sum_probs=45.1
Q ss_pred CCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCC
Q 040384 101 VGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGK 161 (224)
Q Consensus 101 pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~ 161 (224)
|+-..++||| +.-|++||.+|++++.+ +++ ...+++||++++|+|.+|.+...++
T Consensus 27 ~~~~~~~H~h-~~~~l~~v~~G~~~~~i---~~~--~~~l~~g~l~li~~~~~H~~~~~~~ 81 (282)
T PRK13502 27 PQDVFAEHTH-EFCELVMVWRGNGLHVL---NER--PYRITRGDLFYIRAEDKHSYTSVND 81 (282)
T ss_pred CCCCCCcccc-ceEEEEEEecCcEEEEE---CCE--EEeecCCcEEEECCCCcccccccCC
Confidence 3344689999 57899999999999876 454 6899999999999999999865443
No 48
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.49 E-value=0.00021 Score=58.20 Aligned_cols=54 Identities=24% Similarity=0.391 Sum_probs=48.5
Q ss_pred ccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEe
Q 040384 104 INPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLN 158 (224)
Q Consensus 104 ~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N 158 (224)
....|.|++ .||-||++|++..-+-+.+++....-+++||++++|+|.-|.+--
T Consensus 85 FfEEhlh~d-eeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTt 138 (179)
T KOG2107|consen 85 FFEEHLHED-EEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTT 138 (179)
T ss_pred HHHHhcCch-hheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeec
Confidence 457899976 799999999999999888888888899999999999999999853
No 49
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=97.42 E-value=0.00069 Score=61.50 Aligned_cols=88 Identities=15% Similarity=0.018 Sum_probs=64.1
Q ss_pred CCceEEEeecccCCC-CccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecC
Q 040384 72 FGRAVTEGNVHEFPG-VNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPR 150 (224)
Q Consensus 72 ~g~~~~~~~~~~~P~-l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~ 150 (224)
.|..+..+|..+-+. ..+++.. ...+++|....+|-| ..+.++||++|++++.+ +++ +...++||+|++|.
T Consensus 231 ~g~~l~y~NP~TG~~~~pti~~~--~q~L~~G~~t~~~r~-T~s~Vf~VieG~G~s~i---g~~--~~~W~~gD~f~vPs 302 (335)
T TIGR02272 231 HGLKLRYVNPATGGYPMPTIGAF--IQLLPKGFRTATYRS-TDATVFCVVEGRGQVRI---GDA--VFRFSPKDVFVVPS 302 (335)
T ss_pred ceEEEEEeCCCCCCCcchhHHHH--HhccCCCCCCCCccc-cccEEEEEEeCeEEEEE---CCE--EEEecCCCEEEECC
Confidence 344566677655553 4545444 356788889999999 45799999999999987 344 68999999999999
Q ss_pred CCeeEEEecCCccEEEEEE
Q 040384 151 GLVHFQLNVGKENVLFFPS 169 (224)
Q Consensus 151 G~~H~~~N~G~~~a~~~~~ 169 (224)
...|...|. +++.++.+
T Consensus 303 W~~~~h~a~--~da~Lf~~ 319 (335)
T TIGR02272 303 WHPVRFEAS--DDAVLFSF 319 (335)
T ss_pred CCcEecccC--CCeEEEEe
Confidence 988776664 34554433
No 50
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=97.41 E-value=0.0006 Score=55.23 Aligned_cols=58 Identities=21% Similarity=0.256 Sum_probs=41.6
Q ss_pred EEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEE
Q 040384 92 ISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQL 157 (224)
Q Consensus 92 is~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~ 157 (224)
+++....++.. +.-|.-...|+.||++|++.+.. +|+ +...++||+++||+|.--.+.
T Consensus 77 l~~Gf~~le~~---~f~wtl~YDEi~~VlEG~L~i~~---~G~--~~~A~~GDvi~iPkGs~I~fs 134 (152)
T PF06249_consen 77 LSAGFMELEKT---SFPWTLTYDEIKYVLEGTLEISI---DGQ--TVTAKPGDVIFIPKGSTITFS 134 (152)
T ss_dssp SEEEEEEEEEE---EEEEE-SSEEEEEEEEEEEEEEE---TTE--EEEEETT-EEEE-TT-EEEEE
T ss_pred eeeEEEEEeCC---CccEEeecceEEEEEEeEEEEEE---CCE--EEEEcCCcEEEECCCCEEEEe
Confidence 45555566653 45688888999999999998873 466 689999999999999876554
No 51
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=97.41 E-value=0.0017 Score=53.74 Aligned_cols=70 Identities=17% Similarity=0.199 Sum_probs=57.2
Q ss_pred EEEEEEEEeCCcccCceecCCC-CceEEEEeCeEEEEEEeCC------CeEEEEEECCC--CEEEecCCCeeEEEecCCc
Q 040384 92 ISTNRVDLAVGGINPPHLHPRS-SESSIVIRGTVLVGIITTD------NVFYSKVVTAG--MLFLIPRGLVHFQLNVGKE 162 (224)
Q Consensus 92 is~~rv~l~pgg~~~pH~Hp~a-~Ei~yVl~G~~~v~~v~~~------~~~~~~~l~~G--Dv~vvP~G~~H~~~N~G~~ 162 (224)
+|.++ +|-++..|||..- .+++.|++|++..-.+|-. ++.....+.+- ..+.||+|++|-.+|.+++
T Consensus 49 ~S~S~----~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~ 124 (173)
T COG1898 49 HSFSY----PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDD 124 (173)
T ss_pred EEEec----CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCc
Confidence 55554 8889999999887 8999999999999888743 35566677654 8999999999999999987
Q ss_pred cEE
Q 040384 163 NVL 165 (224)
Q Consensus 163 ~a~ 165 (224)
..+
T Consensus 125 ~~~ 127 (173)
T COG1898 125 AEV 127 (173)
T ss_pred eEE
Confidence 633
No 52
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=97.39 E-value=0.0013 Score=56.00 Aligned_cols=73 Identities=19% Similarity=0.200 Sum_probs=61.1
Q ss_pred EEEEEEEEeCCc-ccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEE
Q 040384 92 ISTNRVDLAVGG-INPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPS 169 (224)
Q Consensus 92 is~~rv~l~pgg-~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~ 169 (224)
++-..+++.|+| .-.|-.-+++..++||++|++.+.+ +|+ +..|++|+..++|+|..|...|...+++.+.-+
T Consensus 61 F~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~---~G~--th~l~eggyaylPpgs~~~~~N~~~~~~rfhw~ 134 (264)
T COG3257 61 FVQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKA---EGK--THALREGGYAYLPPGSGWTLRNAQKEDSRFHWI 134 (264)
T ss_pred hhhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEE---cCe--EEEeccCCeEEeCCCCcceEeeccCCceEEEEE
Confidence 344567887776 6678777889999999999999887 455 789999999999999999999999888876544
No 53
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=97.26 E-value=0.0043 Score=49.93 Aligned_cols=63 Identities=16% Similarity=0.257 Sum_probs=42.5
Q ss_pred EEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCc
Q 040384 98 DLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKE 162 (224)
Q Consensus 98 ~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~ 162 (224)
.=.|+.-.--|+.+ ..|++|-++|...+.+++ +|+.....+++||+|..|++..|.-.-..++
T Consensus 39 VGGPN~R~DyHine-~eE~FyQ~kG~m~Lkv~e-~g~~kdi~I~EGe~fLLP~~vpHsP~R~~~t 101 (151)
T PF06052_consen 39 VGGPNQRTDYHINE-TEEFFYQLKGDMCLKVVE-DGKFKDIPIREGEMFLLPANVPHSPQRPADT 101 (151)
T ss_dssp EESSB--SSEEE-S-S-EEEEEEES-EEEEEEE-TTEEEEEEE-TTEEEEE-TT--EEEEE-TT-
T ss_pred EcCCCCCCccccCC-cceEEEEEeCcEEEEEEe-CCceEEEEeCCCcEEecCCCCCCCCcCCCCc
Confidence 33455555568874 689999999999999988 5777789999999999999999997665443
No 54
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=97.10 E-value=0.004 Score=51.64 Aligned_cols=78 Identities=15% Similarity=0.204 Sum_probs=55.4
Q ss_pred eCCcccCceecCCC---CceEEEEeCeEEEEEEeCC------CeEEEEEECCCC--EEEecCCCeeEEEecCCccEEEEE
Q 040384 100 AVGGINPPHLHPRS---SESSIVIRGTVLVGIITTD------NVFYSKVVTAGM--LFLIPRGLVHFQLNVGKENVLFFP 168 (224)
Q Consensus 100 ~pgg~~~pH~Hp~a---~Ei~yVl~G~~~v~~v~~~------~~~~~~~l~~GD--v~vvP~G~~H~~~N~G~~~a~~~~ 168 (224)
.+|-++.+|+|..- ..++.|++|++..-++|-. |+.....|.+++ .++||+|..|-....+++..+.+-
T Consensus 51 ~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~a~v~Y~ 130 (176)
T PF00908_consen 51 KKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDDAEVLYK 130 (176)
T ss_dssp ETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSEEEEEEE
T ss_pred cccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCceEEEEe
Confidence 45888999999764 5899999999999898832 677888887765 799999999999999776333333
Q ss_pred EeeCCCCcc
Q 040384 169 SFNSQLPGT 177 (224)
Q Consensus 169 ~~~s~~pg~ 177 (224)
.-+.-+|+.
T Consensus 131 ~t~~y~p~~ 139 (176)
T PF00908_consen 131 VTNYYDPED 139 (176)
T ss_dssp ESS---GGG
T ss_pred cCCccCccc
Confidence 322334544
No 55
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=96.98 E-value=0.0067 Score=50.33 Aligned_cols=69 Identities=19% Similarity=0.243 Sum_probs=55.3
Q ss_pred eCCcccCceecC--CCCceEEEEeCeEEEEEEeCC------CeEEEEEECC--CCEEEecCCCeeEEEecCCccEEEEEE
Q 040384 100 AVGGINPPHLHP--RSSESSIVIRGTVLVGIITTD------NVFYSKVVTA--GMLFLIPRGLVHFQLNVGKENVLFFPS 169 (224)
Q Consensus 100 ~pgg~~~pH~Hp--~a~Ei~yVl~G~~~v~~v~~~------~~~~~~~l~~--GDv~vvP~G~~H~~~N~G~~~a~~~~~ 169 (224)
.+|.++.+|+|. .-..+++|++|++..-++|-. |+.....|.+ +..+.||+|..|-....+++ +.++-.
T Consensus 52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~-a~v~Y~ 130 (176)
T TIGR01221 52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDE-AEFLYK 130 (176)
T ss_pred cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCC-eEEEEe
Confidence 568889999983 357999999999999898853 5777778876 66999999999999998865 444333
No 56
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=96.85 E-value=0.0083 Score=46.49 Aligned_cols=61 Identities=20% Similarity=0.211 Sum_probs=45.6
Q ss_pred EEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEec
Q 040384 92 ISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNV 159 (224)
Q Consensus 92 is~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~ 159 (224)
+......-.||.. +++-...|+.|+++|++++. .++|+ ...+++||++++|+|..--+.-.
T Consensus 45 ~~~GiWe~TpG~~---r~~y~~~E~chil~G~v~~T--~d~Ge--~v~~~aGD~~~~~~G~~g~W~V~ 105 (116)
T COG3450 45 VETGIWECTPGKF---RVTYDEDEFCHILEGRVEVT--PDGGE--PVEVRAGDSFVFPAGFKGTWEVL 105 (116)
T ss_pred eeEeEEEecCccc---eEEcccceEEEEEeeEEEEE--CCCCe--EEEEcCCCEEEECCCCeEEEEEe
Confidence 4455566666654 45556689999999998875 33455 78999999999999998776543
No 57
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=96.83 E-value=0.026 Score=46.61 Aligned_cols=83 Identities=13% Similarity=0.083 Sum_probs=56.8
Q ss_pred cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCe--------EEEEEECCCCEEEecCCCeeEEEecC-C
Q 040384 91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNV--------FYSKVVTAGMLFLIPRGLVHFQLNVG-K 161 (224)
Q Consensus 91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~--------~~~~~l~~GDv~vvP~G~~H~~~N~G-~ 161 (224)
.+.+..+...||...+.|=|.++.-++.|++|+++-......+. .....+..|...+++.+.+|.+.|.+ +
T Consensus 74 ~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~~ 153 (175)
T PF05995_consen 74 RFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSGD 153 (175)
T ss_dssp T-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-SS
T ss_pred CeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCCC
Confidence 56778899999999999999777889999999988776543221 12345788888899999999999886 7
Q ss_pred ccEEEEEEeeCC
Q 040384 162 ENVLFFPSFNSQ 173 (224)
Q Consensus 162 ~~a~~~~~~~s~ 173 (224)
++++-+=++..+
T Consensus 154 ~~avSLHvYspP 165 (175)
T PF05995_consen 154 EPAVSLHVYSPP 165 (175)
T ss_dssp S-EEEEEEEES-
T ss_pred CCEEEEEEcCCC
Confidence 777766555543
No 58
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=96.65 E-value=0.013 Score=47.37 Aligned_cols=63 Identities=19% Similarity=0.251 Sum_probs=45.4
Q ss_pred cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCC
Q 040384 91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGK 161 (224)
Q Consensus 91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~ 161 (224)
.+++....+++ ... -|-.+-+|+-||++|++.+.. +|+ +..-++||++++|+|.---+--.|.
T Consensus 99 ~l~aG~m~~~~-~tf--~wtl~yDe~d~VlEGrL~V~~---~g~--tv~a~aGDvifiPKgssIefst~ge 161 (176)
T COG4766 99 RLGAGLMEMKN-TTF--PWTLNYDEIDYVLEGRLHVRI---DGR--TVIAGAGDVIFIPKGSSIEFSTTGE 161 (176)
T ss_pred ccccceeeecc-ccC--cceecccceeEEEeeeEEEEE---cCC--eEecCCCcEEEecCCCeEEEeccce
Confidence 34555566666 333 355578899999999999876 344 5688999999999998766544443
No 59
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=96.51 E-value=0.016 Score=48.98 Aligned_cols=67 Identities=25% Similarity=0.373 Sum_probs=48.1
Q ss_pred EEEEEEEeC-CcccCceecCCCCceEEEEeCeEEEEEEeCCC-----------------------------------eEE
Q 040384 93 STNRVDLAV-GGINPPHLHPRSSESSIVIRGTVLVGIITTDN-----------------------------------VFY 136 (224)
Q Consensus 93 s~~rv~l~p-gg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~-----------------------------------~~~ 136 (224)
....+-+.+ |...+.|+.+ ..-++.+++|+=++.+..+.. +.+
T Consensus 131 ~~~~l~ig~~gs~t~lH~D~-~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~ 209 (251)
T PF13621_consen 131 QSSNLWIGPPGSFTPLHYDP-SHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPY 209 (251)
T ss_dssp CEEEEEEE-TTEEEEEEE-S-SEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EE
T ss_pred cccEEEEeCCCceeeeeECc-hhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCcee
Confidence 344566766 5577889986 568889999999998887641 124
Q ss_pred EEEECCCCEEEecCCCeeEEEecC
Q 040384 137 SKVVTAGMLFLIPRGLVHFQLNVG 160 (224)
Q Consensus 137 ~~~l~~GDv~vvP~G~~H~~~N~G 160 (224)
..+|++||+++||+|..|.+.|..
T Consensus 210 ~~~l~pGD~LfiP~gWwH~V~~~~ 233 (251)
T PF13621_consen 210 EVVLEPGDVLFIPPGWWHQVENLS 233 (251)
T ss_dssp EEEEETT-EEEE-TT-EEEEEEST
T ss_pred EEEECCCeEEEECCCCeEEEEEcC
Confidence 689999999999999999999983
No 60
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=96.36 E-value=0.049 Score=50.99 Aligned_cols=87 Identities=15% Similarity=0.109 Sum_probs=49.9
Q ss_pred EeecccCCCCccccEEEEEEEEeCCcc-cCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEE
Q 040384 78 EGNVHEFPGVNTQGISTNRVDLAVGGI-NPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQ 156 (224)
Q Consensus 78 ~~~~~~~P~l~~~gis~~rv~l~pgg~-~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~ 156 (224)
.+....-|..+. |+++...... ..| ...-++-+++|++++.+|++++.- +-|+ ..+++||++|||+|+.+.+
T Consensus 112 ti~g~gd~~~~~-g~ai~~y~~~-~sM~~~~f~NaDGD~Li~~q~G~l~l~T--e~G~---L~v~pGd~~VIPRG~~~rv 184 (424)
T PF04209_consen 112 TIAGAGDPLSNN-GVAIHVYAAN-ASMDDRAFRNADGDELIFPQQGSLRLET--EFGR---LDVRPGDYVVIPRGTRFRV 184 (424)
T ss_dssp EEEEECECCCTE-EEEEEEEEE--S---SEEEEESSEEEEEEEEES-EEEEE--TTEE---EEE-TTEEEEE-TT--EEE
T ss_pred ccccCccccccC-CcEEEEEEcC-CCCCCcceEcCCCCEEEEEEECCEEEEe--cCee---EEEcCCeEEEECCeeEEEE
Confidence 344445555543 5554433333 233 344556789999999999998763 3354 6799999999999999998
Q ss_pred EecCCccEEEEEEee
Q 040384 157 LNVGKENVLFFPSFN 171 (224)
Q Consensus 157 ~N~G~~~a~~~~~~~ 171 (224)
.=.|.....++..+.
T Consensus 185 ~l~~p~rgyi~E~~~ 199 (424)
T PF04209_consen 185 ELPGPARGYIIENFG 199 (424)
T ss_dssp E-SSSEEEEEEEEES
T ss_pred EeCCCceEEEEEcCC
Confidence 655443344444444
No 61
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.34 E-value=0.014 Score=52.19 Aligned_cols=90 Identities=21% Similarity=0.101 Sum_probs=63.7
Q ss_pred CCCceEEEeecccCCC-CccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEec
Q 040384 71 AFGRAVTEGNVHEFPG-VNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIP 149 (224)
Q Consensus 71 ~~g~~~~~~~~~~~P~-l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP 149 (224)
-.|..+..+|..+=-- .. -|.+..--|.||-...+|-|.+ +.+.-|.+|++++.+ +|+ ++...+||+|++|
T Consensus 241 ~dG~~~ryvNP~TGg~~mp--tI~a~mqlL~~Gf~~~~~r~t~-s~iy~V~eGsg~~~I---g~~--rf~~~~~D~fvVP 312 (351)
T COG3435 241 FDGYKMRYVNPVTGGYAMP--TIGAFMQLLPPGFHGKAHRHTD-STIYHVVEGSGYTII---GGE--RFDWSAGDIFVVP 312 (351)
T ss_pred CCcceEEEecCCCCCCcCc--hHHHHHHhcCCcccCCceeccC-CEEEEEEecceeEEE---CCE--EeeccCCCEEEcc
Confidence 4566666666432111 11 1333344578888889999965 578889999999887 455 6899999999999
Q ss_pred CCCeeEEEecCCccEEEEEE
Q 040384 150 RGLVHFQLNVGKENVLFFPS 169 (224)
Q Consensus 150 ~G~~H~~~N~G~~~a~~~~~ 169 (224)
.=..|...|. ++++.++++
T Consensus 313 sW~~~~~~~g-s~da~LFsf 331 (351)
T COG3435 313 SWAWHEHVNG-SEDAVLFSF 331 (351)
T ss_pred CcceeecccC-CcceEEEec
Confidence 9888888765 667776654
No 62
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=95.36 E-value=0.07 Score=39.67 Aligned_cols=71 Identities=27% Similarity=0.260 Sum_probs=35.7
Q ss_pred EEEeCCcccCceecCCCC--ceEEEE--eCeEEEEEEeCCC------------------eEEEEEECCCCEEEecCCCee
Q 040384 97 VDLAVGGINPPHLHPRSS--ESSIVI--RGTVLVGIITTDN------------------VFYSKVVTAGMLFLIPRGLVH 154 (224)
Q Consensus 97 v~l~pgg~~~pH~Hp~a~--Ei~yVl--~G~~~v~~v~~~~------------------~~~~~~l~~GDv~vvP~G~~H 154 (224)
...++|+...+|.|+++. -+.||- ++...+.+.+++. .......++||+++||.-+.|
T Consensus 5 ni~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~l~H 84 (101)
T PF13759_consen 5 NIYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSWLWH 84 (101)
T ss_dssp EEE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETTSEE
T ss_pred EEeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCCCEE
Confidence 356789999999998752 333443 2333445554421 234568899999999999999
Q ss_pred EEE-ecCCccEEEE
Q 040384 155 FQL-NVGKENVLFF 167 (224)
Q Consensus 155 ~~~-N~G~~~a~~~ 167 (224)
... |.++++-+-+
T Consensus 85 ~v~p~~~~~~Risi 98 (101)
T PF13759_consen 85 GVPPNNSDEERISI 98 (101)
T ss_dssp EE----SSS-EEEE
T ss_pred eccCcCCCCCEEEE
Confidence 985 4455443333
No 63
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=95.19 E-value=0.085 Score=40.25 Aligned_cols=62 Identities=21% Similarity=0.206 Sum_probs=45.0
Q ss_pred CcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecC--CCeeEEEecCC-ccEEEE
Q 040384 102 GGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPR--GLVHFQLNVGK-ENVLFF 167 (224)
Q Consensus 102 gg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~--G~~H~~~N~G~-~~a~~~ 167 (224)
+.-.++|-|.+-.-+.||++|+++-. |+.|. ..+|++||+-++-+ |+.|...|.++ +++..+
T Consensus 39 ~~gf~~HPH~g~eivTyv~~G~~~H~--Ds~G~--~~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~l 103 (107)
T PF02678_consen 39 GAGFPMHPHRGFEIVTYVLEGELRHR--DSLGN--RGVLRAGDVQWMTAGSGIVHSERNASDGGPLHGL 103 (107)
T ss_dssp TTEEEEEEECSEEEEEEEEESEEEEE--ETTSE--EEEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEE
T ss_pred CCCCCCcCCCCceEEEEEecCEEEEE--CCCCC--eeEeCCCeEEEEeCCCCceEEEecCCCCCeEEEE
Confidence 45568999976666679999998654 66565 57899999988865 67999999887 555543
No 64
>PF12852 Cupin_6: Cupin
Probab=95.11 E-value=0.088 Score=43.19 Aligned_cols=44 Identities=23% Similarity=0.364 Sum_probs=34.8
Q ss_pred CceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecC
Q 040384 114 SESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVG 160 (224)
Q Consensus 114 ~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G 160 (224)
.-+.+|++|++++.+-+ .+ ....|++||++++|+|..|......
T Consensus 36 ~~fh~V~~G~~~l~~~~-~~--~~~~L~~GDivllp~g~~H~l~~~~ 79 (186)
T PF12852_consen 36 ASFHVVLRGSCWLRVPG-GG--EPIRLEAGDIVLLPRGTAHVLSSDP 79 (186)
T ss_pred eEEEEEECCeEEEEEcC-CC--CeEEecCCCEEEEcCCCCeEeCCCC
Confidence 45678999999998522 12 3689999999999999999995443
No 65
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=95.00 E-value=0.22 Score=46.67 Aligned_cols=62 Identities=13% Similarity=0.139 Sum_probs=45.8
Q ss_pred cCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEee
Q 040384 105 NPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFN 171 (224)
Q Consensus 105 ~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~ 171 (224)
...-++-++++++++.+|++.+.-. -|+ ..+++||++|||+|+.+.+.=.|.....++..+.
T Consensus 140 ~~~f~NaDGD~Livpq~G~l~i~TE--fG~---L~v~pgei~VIPRG~~frv~l~gp~rgyi~E~~g 201 (429)
T TIGR01015 140 NRAFYNADGDFLIVPQQGALLITTE--FGR---LLVEPNEICVIPRGVRFRVTVLEPARGYICEVYG 201 (429)
T ss_pred cceeeccCCCEEEEEEeCcEEEEEe--ccc---eEecCCCEEEecCccEEEEeeCCCceEEEEeccC
Confidence 4445666899999999999988742 254 7899999999999999888654543344444444
No 66
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=94.84 E-value=0.25 Score=46.39 Aligned_cols=57 Identities=14% Similarity=0.099 Sum_probs=42.7
Q ss_pred cCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEE
Q 040384 105 NPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFF 167 (224)
Q Consensus 105 ~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~ 167 (224)
...-++-+++|++++.+|++++.-. -|+ ..+++||++|||+|+.+.+. ..+++++.+
T Consensus 146 ~~~f~NaDGD~Livpq~G~l~i~TE--fG~---L~v~pgei~VIPRG~~frv~-l~~gp~rgy 202 (438)
T PRK05341 146 DRYFYNADGELLIVPQQGRLRLATE--LGV---LDVEPGEIAVIPRGVKFRVE-LPDGPARGY 202 (438)
T ss_pred cceeecCCCCEEEEEEeCCEEEEEe--ccc---eEecCCCEEEEcCccEEEEe-cCCCCeeEE
Confidence 4445667899999999999987742 254 68999999999999998875 323344443
No 67
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=94.67 E-value=0.24 Score=44.54 Aligned_cols=67 Identities=16% Similarity=0.193 Sum_probs=41.2
Q ss_pred EEEEEEEeCCc--ccCceecCCCCceEEEEeCeEEEEEEeCC------------------CeEEEEEECCCCEEEecCCC
Q 040384 93 STNRVDLAVGG--INPPHLHPRSSESSIVIRGTVLVGIITTD------------------NVFYSKVVTAGMLFLIPRGL 152 (224)
Q Consensus 93 s~~rv~l~pgg--~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~------------------~~~~~~~l~~GDv~vvP~G~ 152 (224)
..+.+.+.|+| -..|||=. ..-+++=++|+=+-.+-.+. ......+|++||++++|+|+
T Consensus 114 ~~~n~Y~tp~g~~g~~~H~D~-~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~ 192 (319)
T PF08007_consen 114 VGANAYLTPPGSQGFGPHYDD-HDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGW 192 (319)
T ss_dssp EEEEEEEETSSBEESECEE-S-SEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-
T ss_pred cceEEEecCCCCCCccCEECC-cccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCc
Confidence 44556788888 78899873 33444456676454444421 01346899999999999999
Q ss_pred eeEEEecC
Q 040384 153 VHFQLNVG 160 (224)
Q Consensus 153 ~H~~~N~G 160 (224)
+|.....+
T Consensus 193 ~H~~~~~~ 200 (319)
T PF08007_consen 193 WHQAVTTD 200 (319)
T ss_dssp EEEEEESS
T ss_pred cCCCCCCC
Confidence 99999887
No 68
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=94.53 E-value=0.14 Score=43.35 Aligned_cols=75 Identities=28% Similarity=0.257 Sum_probs=45.8
Q ss_pred EEEEeCCcccCceecCCC--CceEEEE--eCeEEEEEEeCCC------------------eEEEEEECCCCEEEecCCCe
Q 040384 96 RVDLAVGGINPPHLHPRS--SESSIVI--RGTVLVGIITTDN------------------VFYSKVVTAGMLFLIPRGLV 153 (224)
Q Consensus 96 rv~l~pgg~~~pH~Hp~a--~Ei~yVl--~G~~~v~~v~~~~------------------~~~~~~l~~GDv~vvP~G~~ 153 (224)
...+.+||....|.||++ +-+.||- .|.+...+.++.. ......-++||+++||.-+.
T Consensus 100 ~ni~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlFPS~L~ 179 (201)
T TIGR02466 100 VNILPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLFESWLR 179 (201)
T ss_pred EEEcCCCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEECCCCc
Confidence 346688999999999986 3344555 2333333333220 01123448999999999999
Q ss_pred eEEE-ecCCccEEEEEEee
Q 040384 154 HFQL-NVGKENVLFFPSFN 171 (224)
Q Consensus 154 H~~~-N~G~~~a~~~~~~~ 171 (224)
|... |.++++- +-.+||
T Consensus 180 H~v~p~~~~~~R-ISiSFN 197 (201)
T TIGR02466 180 HEVPPNESEEER-ISVSFN 197 (201)
T ss_pred eecCCCCCCCCE-EEEEEe
Confidence 9975 5554443 333443
No 69
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=94.40 E-value=0.4 Score=41.16 Aligned_cols=67 Identities=19% Similarity=0.361 Sum_probs=42.4
Q ss_pred EEEEeCCcccCceecCCCCceEEEEe-CeEEEEEEeCC--C--------------eEE------EEEECCCCEEEecCCC
Q 040384 96 RVDLAVGGINPPHLHPRSSESSIVIR-GTVLVGIITTD--N--------------VFY------SKVVTAGMLFLIPRGL 152 (224)
Q Consensus 96 rv~l~pgg~~~pH~Hp~a~Ei~yVl~-G~~~v~~v~~~--~--------------~~~------~~~l~~GDv~vvP~G~ 152 (224)
.+.+.+|.+.|.|+|..-.|=++.-- |.+.+.+...+ + ... ..+|++|+.+-+++|.
T Consensus 91 im~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiTL~Pg~ 170 (225)
T PF07385_consen 91 IMIVREGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESITLPPGI 170 (225)
T ss_dssp EEEE-BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEEE-TTE
T ss_pred heeccCCCcCCcccCcchhhheeecCCceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEeeCCCC
Confidence 35678899999999998878776665 57777766542 1 111 3689999999999999
Q ss_pred eeEEEecCCc
Q 040384 153 VHFQLNVGKE 162 (224)
Q Consensus 153 ~H~~~N~G~~ 162 (224)
.|++.-.+..
T Consensus 171 yH~Fw~e~g~ 180 (225)
T PF07385_consen 171 YHWFWGEGGD 180 (225)
T ss_dssp EEEEEE-TTS
T ss_pred eeeEEecCCC
Confidence 9999865443
No 70
>PLN02658 homogentisate 1,2-dioxygenase
Probab=94.34 E-value=0.37 Score=45.19 Aligned_cols=59 Identities=15% Similarity=0.142 Sum_probs=42.9
Q ss_pred ceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEe-cCCccEEEEEEe
Q 040384 107 PHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLN-VGKENVLFFPSF 170 (224)
Q Consensus 107 pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N-~G~~~a~~~~~~ 170 (224)
.-++-++++++++.+|++.+.-. -|+ ..+++||++|||+|+.+.+.= .|.....++..+
T Consensus 141 ~f~NaDGD~Livpq~G~l~i~TE--fG~---L~v~pgei~VIPRG~~frv~l~~gp~rgyv~E~~ 200 (435)
T PLN02658 141 AFCNADGDFLIVPQQGRLWIKTE--LGK---LQVSPGEIVVIPRGFRFAVDLPDGPSRGYVLEIF 200 (435)
T ss_pred eeecCCCCEEEEEEeCCEEEEEe--ccc---eEecCCCEEEecCccEEEEecCCCCeeEEEEeec
Confidence 35677899999999999987742 254 688999999999999988752 333333334444
No 71
>COG1741 Pirin-related protein [General function prediction only]
Probab=94.10 E-value=0.14 Score=45.34 Aligned_cols=60 Identities=25% Similarity=0.303 Sum_probs=49.0
Q ss_pred EEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecC--CCeeEEEec
Q 040384 96 RVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPR--GLVHFQLNV 159 (224)
Q Consensus 96 rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~--G~~H~~~N~ 159 (224)
...+.||.-.+||-|.+-.-+.||++|+++-. |+.|+ ...+++||+-..-+ |..|.-+|.
T Consensus 48 ~~~~~pG~~f~pHPHrg~etvTyvl~G~i~Hr--DS~Gn--~~~i~pGdvqwMTAG~GI~HSE~~~ 109 (276)
T COG1741 48 PDVLAPGRGFPPHPHRGLETVTYVLDGEIEHR--DSLGN--KGVIRPGDVQWMTAGSGIVHSEMNP 109 (276)
T ss_pred cccccCCCcCCCCCCCCcEEEEEEEccEEEEe--ecCCc--eeeecccceeEEcCCCceeecccCC
Confidence 45689999999999977666779999998765 55454 58999999998876 678998886
No 72
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=94.01 E-value=0.21 Score=43.62 Aligned_cols=44 Identities=23% Similarity=0.255 Sum_probs=35.5
Q ss_pred CCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecC
Q 040384 112 RSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVG 160 (224)
Q Consensus 112 ~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G 160 (224)
++-++.++++|++.+.. +++ ...+++||++++|+|.+|......
T Consensus 48 ~~~~i~~~~~G~~~~~~---~~~--~~~~~~g~~i~i~p~~~h~~~~~~ 91 (290)
T PRK10572 48 KGYILNLTIRGQGVIFN---GGR--AFVCRPGDLLLFPPGEIHHYGRHP 91 (290)
T ss_pred cceEEEEEEeccEEEec---CCe--eEecCCCCEEEECCCCceeeccCC
Confidence 34578899999998754 344 689999999999999999875543
No 73
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=93.95 E-value=0.57 Score=38.05 Aligned_cols=70 Identities=14% Similarity=0.199 Sum_probs=41.9
Q ss_pred EEEEEEEeCCcccCceecCCCCceEE--EEe---CeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEE
Q 040384 93 STNRVDLAVGGINPPHLHPRSSESSI--VIR---GTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFF 167 (224)
Q Consensus 93 s~~rv~l~pgg~~~pH~Hp~a~Ei~y--Vl~---G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~ 167 (224)
.+....+.||+.+.||.-+....+-+ .+. +...+.+ +++ ....++|+++++--...|+..|.|+++-+.+
T Consensus 81 ~~~~s~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~~~~~v---~~~--~~~w~~G~~~~fD~s~~H~~~N~~~~~Rv~L 155 (163)
T PF05118_consen 81 RVRFSRLPPGTHIKPHRDPTNLRLRLHLPLIVPNPGCYIRV---GGE--TRHWREGECWVFDDSFEHEVWNNGDEDRVVL 155 (163)
T ss_dssp EEEEEEEECTEEEEEE-SS-TTEEEEEEEEC--STTEEEEE---TTE--EEB--CTEEEEE-TTS-EEEEESSSS-EEEE
T ss_pred hEEEEEECCCCEECCeeCCCCcceEEEEEEEcCCCCeEEEE---CCe--EEEeccCcEEEEeCCEEEEEEeCCCCCEEEE
Confidence 45566789999999998764322211 111 2222222 233 6788999999999999999999998765443
No 74
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=93.67 E-value=0.16 Score=37.77 Aligned_cols=29 Identities=31% Similarity=0.531 Sum_probs=21.9
Q ss_pred eEEEEEECCCCEEEecCCCeeEEEecCCc
Q 040384 134 VFYSKVVTAGMLFLIPRGLVHFQLNVGKE 162 (224)
Q Consensus 134 ~~~~~~l~~GDv~vvP~G~~H~~~N~G~~ 162 (224)
+.+...-++||.+++|+|..|+..|.|..
T Consensus 79 ~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~ 107 (114)
T PF02373_consen 79 PVYRFVQKPGEFVFIPPGAYHQVFNLGDN 107 (114)
T ss_dssp --EEEEEETT-EEEE-TT-EEEEEESSSE
T ss_pred ccccceECCCCEEEECCCceEEEEeCCce
Confidence 44578889999999999999999999965
No 75
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=93.61 E-value=0.31 Score=42.94 Aligned_cols=61 Identities=13% Similarity=0.029 Sum_probs=47.2
Q ss_pred eCCcccCceec-CCCCceEEEEeCeEEEEEEeCCCe-EEEEEECC-CCEEEecCCCeeEEEecC
Q 040384 100 AVGGINPPHLH-PRSSESSIVIRGTVLVGIITTDNV-FYSKVVTA-GMLFLIPRGLVHFQLNVG 160 (224)
Q Consensus 100 ~pgg~~~pH~H-p~a~Ei~yVl~G~~~v~~v~~~~~-~~~~~l~~-GDv~vvP~G~~H~~~N~G 160 (224)
-|+++..||.| +.-.|.+.|++|++.+.+.++++. .....+.+ ++.-++|++..|...-..
T Consensus 19 ~p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~~~~~~~l~~~~~~~~i~p~~wh~v~~~s 82 (287)
T PRK12335 19 LPEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGEELSEHIFDAENQPPFIEPQAWHRIEAAS 82 (287)
T ss_pred chHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCCeeeEEEEecCCCCceeCCcceEEEEEcC
Confidence 47888999999 566789999999999988887764 33445555 456679999999987653
No 76
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=92.94 E-value=0.76 Score=34.41 Aligned_cols=68 Identities=22% Similarity=0.175 Sum_probs=43.0
Q ss_pred EEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEe
Q 040384 95 NRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSF 170 (224)
Q Consensus 95 ~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~ 170 (224)
..+.++||+.......+..+-++||++|++.++ +. ...+.+|+++++..|..-.+.+.+ +.+.++.+-
T Consensus 2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v~-----~~--~~~~~~~~~~~l~~g~~i~~~a~~-~~a~~lll~ 69 (104)
T PF05726_consen 2 LDIKLEPGASFTLPLPPGHNAFIYVLEGSVEVG-----GE--EDPLEAGQLVVLEDGDEIELTAGE-EGARFLLLG 69 (104)
T ss_dssp EEEEE-TT-EEEEEEETT-EEEEEEEESEEEET-----TT--TEEEETTEEEEE-SECEEEEEESS-SSEEEEEEE
T ss_pred EEEEECCCCEEEeecCCCCEEEEEEEECcEEEC-----CC--cceECCCcEEEECCCceEEEEECC-CCcEEEEEE
Confidence 457888888754333334467999999998664 22 167999999999976665555543 566665443
No 77
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=92.71 E-value=1.2 Score=33.24 Aligned_cols=60 Identities=15% Similarity=0.026 Sum_probs=40.6
Q ss_pred EEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEec
Q 040384 94 TNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNV 159 (224)
Q Consensus 94 ~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~ 159 (224)
...-.|.||- -+....+.|++-|++|++++.+- |....+++++|+.|.+|.+.-.-++-.
T Consensus 25 ~TlGVm~pGe---Y~F~T~~~E~M~vvsG~l~V~lp---g~~ew~~~~aGesF~VpanssF~v~v~ 84 (94)
T PF06865_consen 25 KTLGVMLPGE---YTFGTSAPERMEVVSGELEVKLP---GEDEWQTYSAGESFEVPANSSFDVKVK 84 (94)
T ss_dssp EEEEEE-SEC---EEEEESS-EEEEEEESEEEEEET---T-SS-EEEETT-EEEE-TTEEEEEEES
T ss_pred ceEEEEeeeE---EEEcCCCCEEEEEEEeEEEEEcC---CCcccEEeCCCCeEEECCCCeEEEEEC
Confidence 3344566766 34555688999999999999873 333478999999999999988766543
No 78
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=92.46 E-value=2.5 Score=35.71 Aligned_cols=130 Identities=12% Similarity=0.020 Sum_probs=81.3
Q ss_pred ccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeE-EEEEECCCCEEEecCCCeeEEEecCCccEEEEE
Q 040384 90 QGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVF-YSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFP 168 (224)
Q Consensus 90 ~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~-~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~ 168 (224)
++.......+++|-.+-..=. ....+.+|++|.+.+...+++|+. ....+.+||++-...+..+...-.-.++..++
T Consensus 34 ~~~~~~~~~~~kge~l~~~Gd-~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~~~~~~~~~~A~~ds~v~- 111 (230)
T PRK09391 34 AGLVASEFSYKKGEEIYGEGE-PADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLESGSTHRFTAEAIVDTTVR- 111 (230)
T ss_pred ccceeeeEEECCCCEEECCCC-CCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccCCCcCCeEEEEcCceEEE-
Confidence 356677788888876643323 456788999999999988877753 44556899988765544332211112333333
Q ss_pred Eee--------CCCCccee----------------------------hhhhhh------cC----CCCCCHHHHHhhcCC
Q 040384 169 SFN--------SQLPGTQF----------------------------VHSSLF------NT----TPPIPNEVLTKTFLV 202 (224)
Q Consensus 169 ~~~--------s~~pg~~~----------------------------~~~~lf------~~----~p~~p~evla~af~v 202 (224)
.++ ..+|.... ++..|. +. ...++.+-||...|+
T Consensus 112 ~i~~~~f~~l~~~~p~l~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rla~~Ll~l~~~~g~~~~i~i~lt~~~IA~~lGi 191 (230)
T PRK09391 112 LIKRRSLEQAAATDVDVARALLSLTAGGLRHAQDHMLLLGRKTAMERVAAFLLEMDERLGGAGMMALPMSRRDIADYLGL 191 (230)
T ss_pred EEEHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCEEEecCCHHHHHHHHCC
Confidence 222 12333210 111111 10 113678999999999
Q ss_pred CHHHHHHHHhccCCCccee
Q 040384 203 GDEVINAIKAAITSAQLGH 221 (224)
Q Consensus 203 ~~~~v~~l~~~~~~~~~i~ 221 (224)
+.+++.++.+.+.+.++|.
T Consensus 192 sretlsR~L~~L~~~GlI~ 210 (230)
T PRK09391 192 TIETVSRALSQLQDRGLIG 210 (230)
T ss_pred CHHHHHHHHHHHHHCCcEE
Confidence 9999999998888888885
No 79
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=92.46 E-value=0.47 Score=38.89 Aligned_cols=77 Identities=21% Similarity=0.238 Sum_probs=51.0
Q ss_pred EEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEE--eCCC----eEEEEEECCCCEEEecCCCeeEEEecCCccEE
Q 040384 92 ISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGII--TTDN----VFYSKVVTAGMLFLIPRGLVHFQLNVGKENVL 165 (224)
Q Consensus 92 is~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v--~~~~----~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~ 165 (224)
+++..+++.||-+.++|-| .-.-++=|++|.=+-.+- +.++ ....+...+|+|-.-| |.+|.+.|+|+....
T Consensus 73 ltV~~~t~~PG~~~p~HnH-~~wglVgil~G~E~n~~y~~~~~~~~~P~~qdk~~apgeV~lSp-gdihsv~n~~sdrs~ 150 (191)
T COG5553 73 LTVYHITLSPGVQYPPHNH-LMWGLVGILWGGETNFIYPLAGEEVDEPERQDKFAAPGEVHLSP-GDIHSVANTGSDRSG 150 (191)
T ss_pred EEEEEEEeCCCcccCCccc-chheeeeeeecccccceecccCCCCCCcchhhhhcCcceEeeCC-CCeeeecccCCCccc
Confidence 7889999999999999999 667778888885332221 1111 1224567778777444 888888887765443
Q ss_pred EEEEe
Q 040384 166 FFPSF 170 (224)
Q Consensus 166 ~~~~~ 170 (224)
.+-++
T Consensus 151 aiHvy 155 (191)
T COG5553 151 AIHVY 155 (191)
T ss_pred eEEEE
Confidence 33333
No 80
>PRK10579 hypothetical protein; Provisional
Probab=92.25 E-value=2.5 Score=31.55 Aligned_cols=55 Identities=22% Similarity=0.161 Sum_probs=42.9
Q ss_pred EEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEe
Q 040384 98 DLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLN 158 (224)
Q Consensus 98 ~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N 158 (224)
.|.||- .+.-..+.|+.-|++|++++.+- |....+++++|+.|-+|.+.-.-++.
T Consensus 29 Vm~pGe---y~F~T~~~E~MeivsG~l~V~Lp---g~~ew~~~~aG~sF~VpanssF~l~v 83 (94)
T PRK10579 29 VMAEGE---YTFSTAEPEEMTVISGALNVLLP---GATDWQVYEAGEVFNVPGHSEFHLQV 83 (94)
T ss_pred EEeeeE---EEEcCCCcEEEEEEeeEEEEECC---CCcccEEeCCCCEEEECCCCeEEEEE
Confidence 455655 45556689999999999999873 33347899999999999998766654
No 81
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=92.16 E-value=0.14 Score=44.76 Aligned_cols=76 Identities=17% Similarity=0.211 Sum_probs=44.9
Q ss_pred cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEe
Q 040384 91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSF 170 (224)
Q Consensus 91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~ 170 (224)
++....+.++.|---.+|+|+ ..|=.||++|++..+.-.. .....|.+|..|--|....|... .++++++++.-.
T Consensus 170 ~~~gll~kLPagf~g~i~~h~-~~eraVvI~G~~~~~~~~~---~~~~~L~~GSYf~s~~~~~H~~~-~~e~~~vlyIRt 244 (251)
T PF14499_consen 170 QYTGLLLKLPAGFTGRIHTHA-SNERAVVISGELDYQSYGA---SNFGTLDPGSYFGSPGHITHGIF-ITEDECVLYIRT 244 (251)
T ss_dssp EE-EEEEE-SSEE--SEEE---S-EEEEEEEEEEEETTEEE---ETTEEEEE-TT-EE--E-------EESS-EEEEEEE
T ss_pred ceeeEEEEcCCCCcCceeccC-CceEEEEEEeEEEEeeccc---CCCccccCCcccccCCccccccc-ccCCCEEEEEEE
Confidence 456677888888889999995 5899999999998864321 12479999999999999999998 667778877655
Q ss_pred e
Q 040384 171 N 171 (224)
Q Consensus 171 ~ 171 (224)
+
T Consensus 245 d 245 (251)
T PF14499_consen 245 D 245 (251)
T ss_dssp S
T ss_pred C
Confidence 4
No 82
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.71 E-value=2 Score=39.46 Aligned_cols=67 Identities=12% Similarity=0.048 Sum_probs=48.3
Q ss_pred ccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCC
Q 040384 90 QGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGK 161 (224)
Q Consensus 90 ~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~ 161 (224)
.|+.+....+..+-....-+.-+..|++|+.+|++++--. -| ...+++||+.+||+|+....+-.+.
T Consensus 123 ~g~~i~~y~~n~sm~~~~f~NADge~Livpq~G~l~l~te--~G---~l~v~pgeiavIPRG~~frve~~~~ 189 (427)
T COG3508 123 DGVAIHVYKVNESMTKRFFRNADGELLIVPQQGELRLKTE--LG---VLEVEPGEIAVIPRGTTFRVELKDG 189 (427)
T ss_pred CceEEEEEEccccchhhhhhcCCCCEEEEeecceEEEEEe--ec---eEEecCCcEEEeeCCceEEEEecCC
Confidence 3566555444444333566777889999999999986532 24 4799999999999999988765443
No 83
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=91.27 E-value=4.3 Score=33.23 Aligned_cols=127 Identities=10% Similarity=0.071 Sum_probs=75.7
Q ss_pred EEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCe-EEEEEECCCCEEEecC----CCeeEEEecCCccEEEEEE
Q 040384 95 NRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNV-FYSKVVTAGMLFLIPR----GLVHFQLNVGKENVLFFPS 169 (224)
Q Consensus 95 ~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~-~~~~~l~~GDv~vvP~----G~~H~~~N~G~~~a~~~~~ 169 (224)
....+++|..+... -.....+.+|++|.+++...+.+|+ .....+.+||++-... ...+...-...++..++.+
T Consensus 21 ~~~~~~kg~~l~~~-g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~a~~~~~v~~i 99 (211)
T PRK11753 21 HIHKYPAKSTLIHA-GEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEI 99 (211)
T ss_pred eEEEeCCCCEEEeC-CCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCCCCceEEEEEcCcEEEEEE
Confidence 45677777766432 2235689999999999987776654 4456789999984432 2122111112334444332
Q ss_pred ee-------CCCCccee----------------------------hhhhhh------cC--CC-----CCCHHHHHhhcC
Q 040384 170 FN-------SQLPGTQF----------------------------VHSSLF------NT--TP-----PIPNEVLTKTFL 201 (224)
Q Consensus 170 ~~-------s~~pg~~~----------------------------~~~~lf------~~--~p-----~~p~evla~af~ 201 (224)
=. ..+|.... ++..|+ +. .| .++.+-||+-+|
T Consensus 100 ~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lG 179 (211)
T PRK11753 100 SYKKFRQLIQVNPDILMALSAQMARRLQNTSRKVGDLAFLDVTGRIAQTLLDLAKQPDAMTHPDGMQIKITRQEIGRIVG 179 (211)
T ss_pred cHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcCCcCCCCceecCCCHHHHHHHhC
Confidence 10 12333310 111111 00 00 377799999999
Q ss_pred CCHHHHHHHHhccCCCcceec
Q 040384 202 VGDEVINAIKAAITSAQLGHR 222 (224)
Q Consensus 202 v~~~~v~~l~~~~~~~~~i~r 222 (224)
++.+++.++.+.+.+.++|..
T Consensus 180 ~tr~tvsR~l~~l~~~gii~~ 200 (211)
T PRK11753 180 CSREMVGRVLKMLEDQGLISA 200 (211)
T ss_pred CCHHHHHHHHHHHHHCCCEEe
Confidence 999999999999888888764
No 84
>COG3806 ChrR Transcriptional activator [Transcription]
Probab=91.27 E-value=0.67 Score=39.19 Aligned_cols=90 Identities=14% Similarity=0.165 Sum_probs=67.0
Q ss_pred cCCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEe
Q 040384 69 SNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLI 148 (224)
Q Consensus 69 ~~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vv 148 (224)
....|+++..+...+ .-..+++++.+.||...|-|+| -.-|.+.|++|. +-+++| .+.+||+..-
T Consensus 110 W~~~G~rv~~v~l~~-----dds~~V~llki~~g~s~P~HtH-~G~E~t~vl~G~----~sde~G-----~y~vgD~~~~ 174 (216)
T COG3806 110 WLGPGGRVEPVRLPT-----DDSRRVALLKIEPGRSFPDHTH-VGIERTAVLEGA----FSDENG-----EYLVGDFTLA 174 (216)
T ss_pred eecCCcceeecccCC-----CCCceeEEEEeccCcccccccc-cceEEEEEEeec----cccCCC-----ccccCceeec
Confidence 445666665554322 2257899999999999999999 578999999997 445554 6788999999
Q ss_pred cCCCeeEEEecCCccEEEEEEeeCC
Q 040384 149 PRGLVHFQLNVGKENVLFFPSFNSQ 173 (224)
Q Consensus 149 P~G~~H~~~N~G~~~a~~~~~~~s~ 173 (224)
+.+.-|.-.-..+.++..+++++.+
T Consensus 175 d~~v~H~piv~~~~eClcl~al~~~ 199 (216)
T COG3806 175 DGTVQHSPIVLPPGECLCLAALDGP 199 (216)
T ss_pred CCccccccccCCCCCceEEEEcCCC
Confidence 9999998544556677778777643
No 85
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=91.23 E-value=1.1 Score=39.06 Aligned_cols=66 Identities=15% Similarity=0.137 Sum_probs=44.4
Q ss_pred cEEEEEEEEeCCccc-----CceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCC
Q 040384 91 GISTNRVDLAVGGIN-----PPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGK 161 (224)
Q Consensus 91 gis~~rv~l~pgg~~-----~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~ 161 (224)
++.+.++...+..+. ..|.+.+.-.++++++|++.+.. +|+ ...+++||++++|.+.+|.+.-.++
T Consensus 44 ~~~l~~~~~~~~~~~R~~~~i~~~~~~~~~l~~~~~G~~~~~~---~g~--~~~l~~G~~~l~~~~~p~~~~~~~~ 114 (302)
T PRK09685 44 GLKLSTVTTNAVNLSRTWQEIKHSDDAHFFTVFQLSGHAIIEQ---DDR--QVQLAAGDITLIDASRPCSIYPQGL 114 (302)
T ss_pred CEEEEEEecCCceEEeChHHhccCCCCcEEEEEEecceEEEEE---CCe--EEEEcCCCEEEEECCCCcEeecCCC
Confidence 455666665554322 23444344456778999988775 455 5789999999999999988754443
No 86
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=90.71 E-value=7.3 Score=31.02 Aligned_cols=97 Identities=15% Similarity=0.068 Sum_probs=62.4
Q ss_pred CCCceEEEeecccCCCCc------cccEEEEEEEEeCCcccCceecCCCCceEEEEeC-eEEEEEEeCCCeEEEEEEC--
Q 040384 71 AFGRAVTEGNVHEFPGVN------TQGISTNRVDLAVGGINPPHLHPRSSESSIVIRG-TVLVGIITTDNVFYSKVVT-- 141 (224)
Q Consensus 71 ~~g~~~~~~~~~~~P~l~------~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G-~~~v~~v~~~~~~~~~~l~-- 141 (224)
+.||..++.......... ....+....-|.++.....|-- +++|+.+-..| .+++.+++++|+..+..|.
T Consensus 14 pEGG~fret~rs~~~~~~~~~~~~R~~~T~Iy~LL~~~~~S~~Hrv-~sdEiw~~~~G~pl~l~~i~~dg~~~~~~LG~d 92 (139)
T PF06172_consen 14 PEGGYFRETYRSPETVSPPSLGPSRSASTSIYYLLTPGEFSAWHRV-DSDEIWHFHAGDPLELHLIDPDGSYETVVLGPD 92 (139)
T ss_dssp TTSSEEEEEEE-SSEEECCTCSSCEES-EEEEEEEETTBEEEEEEE-SSEEEEEEEEES-EEEEEECTTSTEEEEEESST
T ss_pred CCCccEEEEEECCCcccCCCCCCCcccceEEEEEEcCCCCCccEEc-CCCEEEEEEcCCCEEEEEEcCCCCeEEEEECCC
Confidence 466666666544322111 2345666677888777766654 78999998888 6899999999887776663
Q ss_pred --CC--CEEEecCCCeeEEEecCCccEEEEE
Q 040384 142 --AG--MLFLIPRGLVHFQLNVGKENVLFFP 168 (224)
Q Consensus 142 --~G--Dv~vvP~G~~H~~~N~G~~~a~~~~ 168 (224)
+| =.++||+|.....+..+...-.+++
T Consensus 93 ~~~g~~~q~vVp~G~W~aa~l~~~~~y~Lvs 123 (139)
T PF06172_consen 93 LAAGERPQVVVPAGTWQAAELEPEGDYSLVS 123 (139)
T ss_dssp TCTTEBSEEEE-TTSEEEEEECESSSEEEEE
T ss_pred CCCCceEEEEECCCEEEEccccCCCCEEEEE
Confidence 44 3688999998877544444444444
No 87
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=90.03 E-value=1.1 Score=30.76 Aligned_cols=56 Identities=18% Similarity=0.054 Sum_probs=41.6
Q ss_pred EEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEe
Q 040384 98 DLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLN 158 (224)
Q Consensus 98 ~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N 158 (224)
.|.||.....+- .+...+-|.+|++-+.. ++....+-|++||.+.+++|.--++..
T Consensus 3 ~L~~g~~~~lr~--~~~~~l~v~~G~vWlT~---~g~~~D~~L~~G~~l~l~~g~~vvl~a 58 (63)
T PF11142_consen 3 ELAPGETLSLRA--AAGQRLRVESGRVWLTR---EGDPDDYWLQAGDSLRLRRGGRVVLSA 58 (63)
T ss_pred EeCCCceEEeEc--CCCcEEEEccccEEEEC---CCCCCCEEECCCCEEEeCCCCEEEEEe
Confidence 466666665553 34455999999998775 444557999999999999998777653
No 88
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=89.96 E-value=1.9 Score=36.36 Aligned_cols=65 Identities=25% Similarity=0.305 Sum_probs=43.0
Q ss_pred EEEEeCCcccCceecCCCCceEEEE-eCeEEEEEEeCC----------------CeEE------EEEECCCCEEEecCCC
Q 040384 96 RVDLAVGGINPPHLHPRSSESSIVI-RGTVLVGIITTD----------------NVFY------SKVVTAGMLFLIPRGL 152 (224)
Q Consensus 96 rv~l~pgg~~~pH~Hp~a~Ei~yVl-~G~~~v~~v~~~----------------~~~~------~~~l~~GDv~vvP~G~ 152 (224)
...+.+|.+.|.|.|++-.|=++=- .|++++.....+ |+.. ..+|++|+.+-+|+|.
T Consensus 90 iM~vr~gQvtPmHrH~~k~eDiinrgggtlv~el~~~d~~~~~~~ks~vtv~~dg~r~~~~ag~~lkL~PGesitL~Pg~ 169 (225)
T COG3822 90 IMHVRPGQVTPMHRHWRKPEDIINRGGGTLVVELWNVDLVEGQDEKSDVTVPVDGCRQTHTAGSQLKLSPGESITLPPGL 169 (225)
T ss_pred eEEeccCCcCcccccccchhhhhhcCCceEEEEEeccccccCcCCCCCeEecCCCcEEEeccceeEEECCCCcEecCCCc
Confidence 4567899999999998654433222 234444433211 1111 3689999999999999
Q ss_pred eeEEEecC
Q 040384 153 VHFQLNVG 160 (224)
Q Consensus 153 ~H~~~N~G 160 (224)
.||+..-+
T Consensus 170 ~HsFwae~ 177 (225)
T COG3822 170 YHSFWAEE 177 (225)
T ss_pred eeeeeecC
Confidence 99987644
No 89
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=89.74 E-value=2.8 Score=38.94 Aligned_cols=59 Identities=12% Similarity=0.094 Sum_probs=42.1
Q ss_pred cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEE
Q 040384 91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQL 157 (224)
Q Consensus 91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~ 157 (224)
.+.+.++.+..+.. ++..+..++++|++|++++.. ++. +..|++|+++++|++......
T Consensus 320 ~F~~~~~~l~~~~~---~~~~~~~~Illv~~G~~~i~~---~~~--~~~l~~G~~~fipa~~~~~~~ 378 (389)
T PRK15131 320 DFAFSLHDLSDQPT---TLSQQSAAILFCVEGEAVLWK---GEQ--QLTLKPGESAFIAANESPVTV 378 (389)
T ss_pred CcEEEEEEECCceE---EecCCCcEEEEEEcceEEEEe---CCe--EEEECCCCEEEEeCCCccEEE
Confidence 46677777755422 222356799999999998753 333 478999999999998776654
No 90
>PLN02288 mannose-6-phosphate isomerase
Probab=89.39 E-value=1.1 Score=41.64 Aligned_cols=58 Identities=16% Similarity=0.221 Sum_probs=40.9
Q ss_pred cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCC
Q 040384 91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGL 152 (224)
Q Consensus 91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~ 152 (224)
.+++.++.+.++.......+ +..++++|++|++++.. ++......+++|+++++|++.
T Consensus 333 eF~v~~~~l~~~~~~~~~~~-~gp~Illv~~G~~~i~~---~~~~~~~~l~~G~~~fv~a~~ 390 (394)
T PLN02288 333 EFEVDHCDVPPGASVVFPAV-PGPSVFLVIEGEGVLST---GSSEDGTAAKRGDVFFVPAGT 390 (394)
T ss_pred ceEEEEEEeCCCCeEeecCC-CCCEEEEEEcCEEEEec---CCccceEEEeceeEEEEeCCC
Confidence 67888888887753221112 56799999999998853 222123579999999999864
No 91
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=89.12 E-value=2.1 Score=36.22 Aligned_cols=85 Identities=19% Similarity=0.173 Sum_probs=60.4
Q ss_pred CccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCC----------eEEEE-------EECCCC-EEEe
Q 040384 87 VNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDN----------VFYSK-------VVTAGM-LFLI 148 (224)
Q Consensus 87 l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~----------~~~~~-------~l~~GD-v~vv 148 (224)
.++-.+++....|++|+.+|+|=||+=+-+.-|+.|++.+.-.+--. +.... .-.+++ .+.-
T Consensus 39 yE~~~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~a~~~~d~~~~a~~~~~vL~ 118 (200)
T PF07847_consen 39 YEDEDFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIEGQRQPRLARLVVDGEMTAPSDTCVLY 118 (200)
T ss_pred EECCCcEEEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEccccccccccccccccceeeEEEecceecCCCCCeEEc
Confidence 44557888889999999999999999888888999999987654211 11111 123334 4444
Q ss_pred cC--CCeeEEEecCCccEEEEEEeeC
Q 040384 149 PR--GLVHFQLNVGKENVLFFPSFNS 172 (224)
Q Consensus 149 P~--G~~H~~~N~G~~~a~~~~~~~s 172 (224)
|+ |-+|.+.+.+ +++.++-++.-
T Consensus 119 P~~ggNiH~f~a~~-~p~AflDIL~P 143 (200)
T PF07847_consen 119 PTSGGNIHEFTALT-GPCAFLDILAP 143 (200)
T ss_pred cCCCCeeEEEEeCC-CCeEEEEEccC
Confidence 65 4899999887 78888877753
No 92
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=88.73 E-value=2.5 Score=36.44 Aligned_cols=79 Identities=15% Similarity=0.125 Sum_probs=58.2
Q ss_pred cCCCCccccEEEEEEEEeCCcccCc-eecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCC
Q 040384 83 EFPGVNTQGISTNRVDLAVGGINPP-HLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGK 161 (224)
Q Consensus 83 ~~P~l~~~gis~~rv~l~pgg~~~p-H~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~ 161 (224)
-.|.--..++-+..+.++||+..|- -+|-- .-=.||++|++...+ |+. ...+++||.+..-+-.+.+.+..|.
T Consensus 173 v~P~d~r~Dmhv~ivsFePGa~ip~aEtHvm-EHGlyvLeGk~vYrL---n~d--wv~V~aGD~mwm~A~cpQacyagG~ 246 (264)
T COG3257 173 VLPKELRFDMHVHIVSFEPGASIPYAETHVM-EHGLYVLEGKGVYRL---NNN--WVPVEAGDYIWMGAYCPQACYAGGR 246 (264)
T ss_pred eCccccCcceEEEEEEecCCcccchhhhhhh-hcceEEEecceEEee---cCc--eEEeecccEEEeeccChhhhccCCC
Confidence 3444445578999999999999873 45522 335799999998776 222 6799999999999988888887776
Q ss_pred ccEEEE
Q 040384 162 ENVLFF 167 (224)
Q Consensus 162 ~~a~~~ 167 (224)
.....+
T Consensus 247 g~frYL 252 (264)
T COG3257 247 GAFRYL 252 (264)
T ss_pred CceEEE
Confidence 644433
No 93
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.07 E-value=0.38 Score=45.71 Aligned_cols=63 Identities=21% Similarity=0.238 Sum_probs=43.3
Q ss_pred EEEEEeCCc--ccCceecCCCCceEEEEeCeEEEEEEeCCC--------------------eEEEEEECCCCEEEecCCC
Q 040384 95 NRVDLAVGG--INPPHLHPRSSESSIVIRGTVLVGIITTDN--------------------VFYSKVVTAGMLFLIPRGL 152 (224)
Q Consensus 95 ~rv~l~pgg--~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~--------------------~~~~~~l~~GDv~vvP~G~ 152 (224)
+.+.|.|-| -.+|||- +-.-++.=++|+=+-.+-.|.- -++...|++||+++||+|.
T Consensus 319 aNvYLTPagSqGfaPHyD-dIeaFvlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~ 397 (629)
T KOG3706|consen 319 ANVYLTPAGSQGFAPHYD-DIEAFVLQVEGRKHWRLYHPTVPLEELALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGT 397 (629)
T ss_pred cceeecCCCCCCCCCchh-hhhhhhheeccceeeEeecCCCcHhhhhhccCCCCChhHhCCchHHhhcCCCcEEEecCcc
Confidence 345565544 4789998 5555666788875555444431 1235789999999999999
Q ss_pred eeEEEe
Q 040384 153 VHFQLN 158 (224)
Q Consensus 153 ~H~~~N 158 (224)
+|-...
T Consensus 398 IHQA~t 403 (629)
T KOG3706|consen 398 IHQADT 403 (629)
T ss_pred eeeccc
Confidence 998643
No 94
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=88.07 E-value=4.8 Score=35.83 Aligned_cols=60 Identities=18% Similarity=0.204 Sum_probs=42.6
Q ss_pred ccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEE
Q 040384 90 QGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQL 157 (224)
Q Consensus 90 ~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~ 157 (224)
-.+++.++.+...... ...+...+++|++|++++.. ++. ...+++|+.+++|++.-.+..
T Consensus 233 ~~F~~~~~~~~~~~~~---~~~~~~~il~v~~G~~~i~~---~~~--~~~l~~G~~~~ipa~~~~~~i 292 (302)
T TIGR00218 233 EYFSVYKWDISGKAEF---IQQQSALILSVLEGSGRIKS---GGK--TLPLKKGESFFIPAHLGPFTI 292 (302)
T ss_pred CCeEEEEEEeCCceee---ccCCCcEEEEEEcceEEEEE---CCE--EEEEecccEEEEccCCccEEE
Confidence 3677888887643211 12246789999999998853 333 578999999999999865554
No 95
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=86.47 E-value=1.5 Score=37.54 Aligned_cols=53 Identities=17% Similarity=0.355 Sum_probs=43.4
Q ss_pred CceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecC
Q 040384 106 PPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVG 160 (224)
Q Consensus 106 ~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G 160 (224)
--|..+ ..|++|=.+|....-+++. ++.....+++||++..|....|.-+.-.
T Consensus 47 dyHiee-geE~FyQ~KGdMvLKVie~-g~~rDivI~qGe~flLParVpHSPqRFa 99 (279)
T KOG3995|consen 47 DYHIEE-GEEVFYQLKGDMVLKVLEQ-GKHRDVVIRQGEIFLLPARVPHSPQRFA 99 (279)
T ss_pred ccccCC-cchhheeecCceEEeeecc-CcceeeEEecCcEEEeccCCCCChhhhc
Confidence 346664 5899999999999999875 5666889999999999999999854333
No 96
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=86.39 E-value=6.2 Score=35.07 Aligned_cols=76 Identities=18% Similarity=0.197 Sum_probs=47.2
Q ss_pred ccEEEEEEEEeCCc---ccCceecCCCCceEE-E--EeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCcc
Q 040384 90 QGISTNRVDLAVGG---INPPHLHPRSSESSI-V--IRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKEN 163 (224)
Q Consensus 90 ~gis~~rv~l~pgg---~~~pH~Hp~a~Ei~y-V--l~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~ 163 (224)
-.+-+....+.||+ ..|||.|.+..|..| - -++.-...+..+-++.....++-+|++++|+=.+|.-. |..+
T Consensus 173 ~qLlmG~tvltPGg~WSSyPPHkHDrr~E~YlYf~l~~~qrV~h~mG~pdETrh~~v~n~~aVisP~wsih~g~--gt~~ 250 (276)
T PRK00924 173 CQLVMGLTELEPGSVWNTMPCHTHDRRMEVYFYFDMPEDARVFHFMGEPQETRHIVVHNEQAVISPSWSIHSGV--GTSN 250 (276)
T ss_pred ccEEEEEEEEcCCCCCCCCCCccCCCCcceEEEEEcCCCceEEecCCCccceeeEEEECCCEEECCCcceecCc--Cccc
Confidence 45677777889999 469999987777544 1 12211122111112222378999999999999999863 4444
Q ss_pred EEEE
Q 040384 164 VLFF 167 (224)
Q Consensus 164 a~~~ 167 (224)
-.|+
T Consensus 251 y~fi 254 (276)
T PRK00924 251 YTFI 254 (276)
T ss_pred cEEE
Confidence 3333
No 97
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=86.37 E-value=4 Score=37.63 Aligned_cols=76 Identities=13% Similarity=0.160 Sum_probs=52.6
Q ss_pred CCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCcc
Q 040384 84 FPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKEN 163 (224)
Q Consensus 84 ~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~ 163 (224)
.|-.. .+.+-+++++.|.....-.- +...|+.|++|++++.--. +. ...+++|||++||+.+.-.+ +..+++
T Consensus 327 ~Ppi~--eF~v~~~~v~~g~~~~~~~~-~~~SIllv~~G~g~l~~~t--~~--~~~v~rG~V~fI~a~~~i~~-~~~sd~ 398 (411)
T KOG2757|consen 327 DPPIE--EFAVLETKVPTGESYKFPGV-DGPSILLVLKGSGILKTDT--DS--KILVNRGDVLFIPANHPIHL-SSSSDP 398 (411)
T ss_pred CCCCc--ceeEEEeecCCCceEEeecC-CCceEEEEEecceEEecCC--CC--ceeeccCcEEEEcCCCCcee-eccCcc
Confidence 45555 67888899988765333333 4678999999999887421 22 58999999999999876544 334444
Q ss_pred EEEE
Q 040384 164 VLFF 167 (224)
Q Consensus 164 a~~~ 167 (224)
...+
T Consensus 399 ~~~y 402 (411)
T KOG2757|consen 399 FLGY 402 (411)
T ss_pred eeee
Confidence 4444
No 98
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=85.84 E-value=9.3 Score=29.74 Aligned_cols=42 Identities=10% Similarity=0.013 Sum_probs=31.8
Q ss_pred ceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCC
Q 040384 115 ESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGK 161 (224)
Q Consensus 115 Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~ 161 (224)
-+.+.++|+.++.. +++ ...+.+||+++++.+..+.....++
T Consensus 57 ~l~~~~~G~~~~~~---~g~--~~~~~pg~~~l~d~~~~~~~~~~~~ 98 (172)
T PF14525_consen 57 LLVLPLSGSARIEQ---GGR--EVELAPGDVVLLDPGQPYRLEFSAG 98 (172)
T ss_pred EEEEEccCCEEEEE---CCE--EEEEcCCeEEEEcCCCCEEEEECCC
Confidence 35567778887664 454 6899999999999999987765533
No 99
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=85.67 E-value=1.6 Score=40.22 Aligned_cols=71 Identities=23% Similarity=0.315 Sum_probs=46.3
Q ss_pred CCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEE--EEEEeCCC--e---------------EEEEEECCCC
Q 040384 84 FPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVL--VGIITTDN--V---------------FYSKVVTAGM 144 (224)
Q Consensus 84 ~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~--v~~v~~~~--~---------------~~~~~l~~GD 144 (224)
+|.-+.-.+.++ ...+||.+-|||-+. =+|.+||.++ -.+....+ + .....+.+||
T Consensus 113 lP~wr~ddiMIS--~a~~GGgvg~H~D~Y---DVfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGD 187 (383)
T COG2850 113 LPDWRIDDIMIS--FAAPGGGVGPHFDQY---DVFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGD 187 (383)
T ss_pred CccccccceEEE--EecCCCccCccccch---heeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhhhcCCCc
Confidence 455554444444 567899999999854 3566666543 33321111 1 1236899999
Q ss_pred EEEecCCCeeEEEec
Q 040384 145 LFLIPRGLVHFQLNV 159 (224)
Q Consensus 145 v~vvP~G~~H~~~N~ 159 (224)
++++|+|++|+-...
T Consensus 188 iLYiPp~~~H~gvae 202 (383)
T COG2850 188 ILYIPPGFPHYGVAE 202 (383)
T ss_pred eeecCCCCCcCCccc
Confidence 999999999997655
No 100
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=84.32 E-value=9.6 Score=31.96 Aligned_cols=123 Identities=6% Similarity=-0.127 Sum_probs=73.5
Q ss_pred EEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeE-EEEEECCCCEEEecC---C--CeeEEEecCCccEEEEEEe
Q 040384 97 VDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVF-YSKVVTAGMLFLIPR---G--LVHFQLNVGKENVLFFPSF 170 (224)
Q Consensus 97 v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~-~~~~l~~GDv~vvP~---G--~~H~~~N~G~~~a~~~~~~ 170 (224)
..+++|..+-. -......+.+|++|.+++...+.+|+. ....+.+||++-... + ..+.... .++..++ .+
T Consensus 34 ~~~~kge~l~~-~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~~~~~~~~~~~A--~~~~~i~-~i 109 (226)
T PRK10402 34 FHFLAREYIVQ-EGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELIDKDHETKAVQA--IEECWCL-AL 109 (226)
T ss_pred eeeCCCCEEEc-CCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhhcCCCCCccEEE--eccEEEE-EE
Confidence 45666665422 222356899999999999998877753 345678999886532 1 1112222 2233333 22
Q ss_pred e--------CCCCccee----------------------------hhhhhhc----CCCCCCHHHHHhhcCCCHHHHHHH
Q 040384 171 N--------SQLPGTQF----------------------------VHSSLFN----TTPPIPNEVLTKTFLVGDEVINAI 210 (224)
Q Consensus 171 ~--------s~~pg~~~----------------------------~~~~lf~----~~p~~p~evla~af~v~~~~v~~l 210 (224)
+ ..+|.+.. ++..|.. ....++.+-||..+|++.+++.+.
T Consensus 110 ~~~~~~~ll~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Rla~~L~~~~~~~~~~~t~~~lA~~lG~sretvsR~ 189 (226)
T PRK10402 110 PMKDCRPLLLNDALFLRKLCKFLSHKNYRNIVSLTQNQSFPLENRLAAFILLTQEGDLYHEKHTQAAEYLGVSYRHLLYV 189 (226)
T ss_pred EHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHhcccCCcccchHHHHHHHHCCcHHHHHHH
Confidence 2 12332210 1111111 111256789999999999999999
Q ss_pred HhccCCCcceecC
Q 040384 211 KAAITSAQLGHRP 223 (224)
Q Consensus 211 ~~~~~~~~~i~r~ 223 (224)
.+.+.+.|+|.+.
T Consensus 190 L~~L~~~G~I~~~ 202 (226)
T PRK10402 190 LAQFIQDGYLKKS 202 (226)
T ss_pred HHHHHHCCCEEee
Confidence 9999999888653
No 101
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=83.99 E-value=8.5 Score=32.19 Aligned_cols=122 Identities=11% Similarity=0.034 Sum_probs=71.0
Q ss_pred EEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeE-EEEEECCCCEEEecC----CCeeEEEecCCccEEEEEEee
Q 040384 97 VDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVF-YSKVVTAGMLFLIPR----GLVHFQLNVGKENVLFFPSFN 171 (224)
Q Consensus 97 v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~-~~~~l~~GDv~vvP~----G~~H~~~N~G~~~a~~~~~~~ 171 (224)
..+++|..+-.- -.....+.+|++|.+++...+++|+. ....+.+||++-... ...+..... ++..++. ++
T Consensus 40 ~~~~kge~l~~~-Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~~~~~~~~~~~a~--~~~~i~~-ip 115 (235)
T PRK11161 40 KPIQKGQTLFKA-GDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAIGSGQHPSFAQAL--ETSMVCE-IP 115 (235)
T ss_pred eeecCCCEeECC-CCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccccCCCCcceEEEe--ccEEEEE-EE
Confidence 356666544222 22356788999999999988877654 334558999985432 111112111 2333322 22
Q ss_pred C--------CCCcce----------------------------ehhhhhh------cC--------CCCCCHHHHHhhcC
Q 040384 172 S--------QLPGTQ----------------------------FVHSSLF------NT--------TPPIPNEVLTKTFL 201 (224)
Q Consensus 172 s--------~~pg~~----------------------------~~~~~lf------~~--------~p~~p~evla~af~ 201 (224)
. .+|... .++..|. +. .-.++.+-||...|
T Consensus 116 ~~~f~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Rla~~L~~l~~~~~~~~~~~~~~~~~lt~~~iA~~lG 195 (235)
T PRK11161 116 FETLDDLSGKMPKLRQQIMRLMSGEIKGDQEMILLLSKKNAEERLAAFIYNLSRRFAQRGFSPREFRLTMTRGDIGNYLG 195 (235)
T ss_pred HHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCceeEccccHHHHHHHhC
Confidence 1 123220 0111111 10 01378899999999
Q ss_pred CCHHHHHHHHhccCCCcceec
Q 040384 202 VGDEVINAIKAAITSAQLGHR 222 (224)
Q Consensus 202 v~~~~v~~l~~~~~~~~~i~r 222 (224)
++.+.+.|+.+.+...++|..
T Consensus 196 ~sr~tvsR~l~~l~~~g~I~~ 216 (235)
T PRK11161 196 LTVETISRLLGRFQKSGMLAV 216 (235)
T ss_pred CcHHHHHHHHHHHHHCCCEEe
Confidence 999999999999888888864
No 102
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=83.60 E-value=7.4 Score=28.20 Aligned_cols=60 Identities=12% Similarity=0.026 Sum_probs=41.3
Q ss_pred CCcccCceecCCCC--ceEEEEeCeEEEEEEeCCCe--EEEEEECCCCEEEecCCCeeEEEecCC
Q 040384 101 VGGINPPHLHPRSS--ESSIVIRGTVLVGIITTDNV--FYSKVVTAGMLFLIPRGLVHFQLNVGK 161 (224)
Q Consensus 101 pgg~~~pH~Hp~a~--Ei~yVl~G~~~v~~v~~~~~--~~~~~l~~GDv~vvP~G~~H~~~N~G~ 161 (224)
|.++...|.- .+- ..+-|++|++.....++++. .....+++|+.-++++...|.+.-.++
T Consensus 12 P~~l~~~H~T-K~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~ 75 (82)
T PF09313_consen 12 PAALLERHNT-KAGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSD 75 (82)
T ss_dssp -GGGGSSBCC-STTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESST
T ss_pred cHHHHhhcCC-CCCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCC
Confidence 3445556644 232 34569999999998887542 235678999999999999999987765
No 103
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=82.46 E-value=14 Score=32.40 Aligned_cols=75 Identities=28% Similarity=0.325 Sum_probs=39.3
Q ss_pred ceEEEeecccCCCCccccEEEEEEEEeCCc---ccCceecCCC--------CceEEEE-e---CeEEEEEEeCC-CeEEE
Q 040384 74 RAVTEGNVHEFPGVNTQGISTNRVDLAVGG---INPPHLHPRS--------SESSIVI-R---GTVLVGIITTD-NVFYS 137 (224)
Q Consensus 74 ~~~~~~~~~~~P~l~~~gis~~rv~l~pgg---~~~pH~Hp~a--------~Ei~yVl-~---G~~~v~~v~~~-~~~~~ 137 (224)
..|......+.+. .-.+-+..+. .|+| ..|||.|.+. .|+.|-. + |-+.-.+-.++ ..-..
T Consensus 135 R~V~~~i~~~~~~--~~~Lv~get~-~~~G~WsSyPPH~Hd~~~~~~e~~leEiYyf~~~p~~Gfg~q~~y~~~~~~d~~ 211 (261)
T PF04962_consen 135 RTVRNIIDPNVPP--ASRLVVGETI-TPGGNWSSYPPHKHDRRMEPDETELEEIYYFRFNPPQGFGFQRVYTDDPQLDEH 211 (261)
T ss_dssp EEEEEEESTTT-----SS-EEEEEE-ETTT-EES-SEEE-CCEEEESEECTEEEEEEESSTTS-EEEEEEE-TTSSSEEE
T ss_pred EEEEEeeCCCCcc--cceEEEEEEE-eCCCccCCcCCccCCCcCCCccccceeEEEEEccCcccEEEEEEECCCCCCcEE
Confidence 4455555555552 2245566555 6666 3699999763 4555432 2 32322222222 12236
Q ss_pred EEECCCCEEEecCC
Q 040384 138 KVVTAGMLFLIPRG 151 (224)
Q Consensus 138 ~~l~~GDv~vvP~G 151 (224)
..++-||++.+|.|
T Consensus 212 ~~V~~~d~V~iP~g 225 (261)
T PF04962_consen 212 YVVRNGDAVLIPSG 225 (261)
T ss_dssp EEEETTEEEEESTT
T ss_pred EEEECCCEEEeCCC
Confidence 78999999999999
No 104
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=80.35 E-value=6.6 Score=31.94 Aligned_cols=125 Identities=13% Similarity=0.041 Sum_probs=73.1
Q ss_pred EEEEeCCcccCceecC-CCCceEEEEeCeEEEEEEeCCCeEE-EEEECCCCEEEecC--C--CeeEEEecCCccEEEEEE
Q 040384 96 RVDLAVGGINPPHLHP-RSSESSIVIRGTVLVGIITTDNVFY-SKVVTAGMLFLIPR--G--LVHFQLNVGKENVLFFPS 169 (224)
Q Consensus 96 rv~l~pgg~~~pH~Hp-~a~Ei~yVl~G~~~v~~v~~~~~~~-~~~l~~GDv~vvP~--G--~~H~~~N~G~~~a~~~~~ 169 (224)
...+++|..+-----+ .+..+.+|++|.+++...+++|+.. ...+.+||++=.+. + ..++... .++..++.
T Consensus 8 ~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~~~~~~~~~~A--~~~~~v~~- 84 (202)
T PRK13918 8 TVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALAGAERAYFAEA--VTDSRIDV- 84 (202)
T ss_pred eeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhcCCCCCceEEE--cCceEEEE-
Confidence 3456666554221111 2467999999999999988877643 45569999885531 1 1111221 22333332
Q ss_pred eeCC--CCcce----------------------------ehhhhhh------c----C----CCCCCHHHHHhhcCCCHH
Q 040384 170 FNSQ--LPGTQ----------------------------FVHSSLF------N----T----TPPIPNEVLTKTFLVGDE 205 (224)
Q Consensus 170 ~~s~--~pg~~----------------------------~~~~~lf------~----~----~p~~p~evla~af~v~~~ 205 (224)
++.+ +|... .++..+. + . +..++.+-||...|++.+
T Consensus 85 i~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~Rla~~Ll~l~~~~~~~~~~~~~~~~~~t~~~iA~~lG~tre 164 (202)
T PRK13918 85 LNPALMSAEDNLVLTQHLVRTLARAYESIYRLVGQRLKNRIAAALLELSDTPLATQEDSGETMIYATHDELAAAVGSVRE 164 (202)
T ss_pred EEHHHcChhhHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCCCCCCeEEecCCHHHHHHHhCccHH
Confidence 2211 12110 0111110 0 0 123789999999999999
Q ss_pred HHHHHHhccCCCcceecC
Q 040384 206 VINAIKAAITSAQLGHRP 223 (224)
Q Consensus 206 ~v~~l~~~~~~~~~i~r~ 223 (224)
++.++.+.+...++|.+.
T Consensus 165 tvsR~l~~l~~~g~I~~~ 182 (202)
T PRK13918 165 TVTKVIGELSREGYIRSG 182 (202)
T ss_pred HHHHHHHHHHHCCCEEcC
Confidence 999999999998888743
No 105
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=78.13 E-value=5.8 Score=36.08 Aligned_cols=95 Identities=18% Similarity=0.018 Sum_probs=53.3
Q ss_pred eecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCC---------------CeEEEEEECCC
Q 040384 79 GNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTD---------------NVFYSKVVTAG 143 (224)
Q Consensus 79 ~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~---------------~~~~~~~l~~G 143 (224)
++....-+-|++=-.--|..|-|-+..++-.|+...| .|+....++..- .+...-..++|
T Consensus 196 IDPlgTSAWNtll~GhKrW~LfPp~~p~~lvkv~~~e-----~g~~~de~itwf~~~y~rt~~Pswp~E~kPIEc~q~pG 270 (407)
T KOG2130|consen 196 IDPLGTSAWNTLLQGHKRWVLFPPGTPPELVKVTVDE-----GGKQPDEIITWFSTIYPRTQLPSWPDEYKPIECLQKPG 270 (407)
T ss_pred ECCcchHHHHHHhhccceeEEcCCCCCCCceeecccc-----cCCCCcceechhhhccccccCCCCccccCCceeeecCC
Confidence 4444444555544444566666666555433433333 233333333211 13345678999
Q ss_pred CEEEecCCCeeEEEecCCccEEEEEEeeCCCCcce
Q 040384 144 MLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQ 178 (224)
Q Consensus 144 Dv~vvP~G~~H~~~N~G~~~a~~~~~~~s~~pg~~ 178 (224)
++++||.|..|.+.|...+-|+---+-+.+|.+++
T Consensus 271 Et~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~~V 305 (407)
T KOG2130|consen 271 ETMFVPSGWWHVVLNLEPTIAITQNFASKENFPFV 305 (407)
T ss_pred ceEEecCCeEEEEeccCceeeeeeccccccCCcee
Confidence 99999999999999986554433223344555544
No 106
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=77.58 E-value=8.4 Score=33.05 Aligned_cols=95 Identities=15% Similarity=0.119 Sum_probs=59.9
Q ss_pred eCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEeeCCCCcc--
Q 040384 100 AVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGT-- 177 (224)
Q Consensus 100 ~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~s~~pg~-- 177 (224)
.-.|....||. +-.++|++|+..... +|+......++||....|+|...-..-..+. -++.--..--|..
T Consensus 109 gTeGhsGrh~a---d~y~tIL~G~~~~~~---~g~~~~evy~pGd~~~l~rg~a~~y~m~~~t--w~LEY~RG~IP~~lp 180 (216)
T PF04622_consen 109 GTEGHSGRHWA---DDYFTILSGEQWAWS---PGSLEPEVYKPGDSHHLPRGEAKQYQMPPGT--WALEYGRGWIPSMLP 180 (216)
T ss_pred CCCCCCcceEe---eeEEEEEEEEEEEEc---CCCCCceEeccCCEEEecCceEEEEEeCCCe--EEEEecCCchhhhhH
Confidence 33456667774 578899999987653 4566678999999999999998776544322 2222111112221
Q ss_pred eehhhhhhcCCCCCCHHHHHhhcCCCHH
Q 040384 178 QFVHSSLFNTTPPIPNEVLTKTFLVGDE 205 (224)
Q Consensus 178 ~~~~~~lf~~~p~~p~evla~af~v~~~ 205 (224)
+.+++.+|+. ++-..+-++..+...
T Consensus 181 f~~~dt~~sT---lDf~t~~~T~~~~~~ 205 (216)
T PF04622_consen 181 FGFADTLFST---LDFPTLYRTVYITAR 205 (216)
T ss_pred HHHHHHHHhc---cchHHHHHHHHHHHH
Confidence 2345677776 776667666665543
No 107
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=77.57 E-value=5.6 Score=27.25 Aligned_cols=49 Identities=18% Similarity=0.141 Sum_probs=32.6
Q ss_pred EEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeE-EEEEECCCCEEE
Q 040384 98 DLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVF-YSKVVTAGMLFL 147 (224)
Q Consensus 98 ~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~-~~~~l~~GDv~v 147 (224)
.+.+|..+-. -+.....+.+|++|.+.+...+.+++. ....+.+||++-
T Consensus 3 ~~~~g~~i~~-~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g 52 (91)
T PF00027_consen 3 TYKKGEVIYR-QGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFG 52 (91)
T ss_dssp EESTTEEEEE-TTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEES
T ss_pred EECCCCEEEe-CCCcCCEEEEEEECceEEEeceecceeeeecceeeecccc
Confidence 3445554322 222357899999999999988777653 356778887763
No 108
>KOG1417 consensus Homogentisate 1,2-dioxygenase [Amino acid transport and metabolism]
Probab=77.32 E-value=57 Score=29.62 Aligned_cols=86 Identities=14% Similarity=0.151 Sum_probs=56.9
Q ss_pred cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEe
Q 040384 91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSF 170 (224)
Q Consensus 91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~ 170 (224)
|+++-.....-+--...-++.+..-++.-.+|.+.+.- +-|| ..+.++++.|||||+-..+--.|.....++.++
T Consensus 133 GlAIH~~~cN~sM~~safyNsDGDFLiVPQ~G~L~I~T--EfGr---llV~P~EI~VIpqG~RFsi~v~~~sRGYilEvY 207 (446)
T KOG1417|consen 133 GLAIHIYSCNTSMENSAFYNSDGDFLIVPQQGRLWITT--EFGR---LLVTPNEIAVIPQGIRFSIDVPGPSRGYILEVY 207 (446)
T ss_pred ceEEEEEeecCCcccceeecCCCCEEEecccCcEEEEe--eccc---eeecccceEEeecccEEEEecCCCCcceEEEEe
Confidence 44443333333333456677777777777788887653 3354 678999999999999988877777777777777
Q ss_pred eC--CCCcceehh
Q 040384 171 NS--QLPGTQFVH 181 (224)
Q Consensus 171 ~s--~~pg~~~~~ 181 (224)
.. +-|..-.++
T Consensus 208 g~HF~LPDLGPIG 220 (446)
T KOG1417|consen 208 GAHFQLPDLGPIG 220 (446)
T ss_pred cceeecCCCCccc
Confidence 53 344444333
No 109
>PLN02868 acyl-CoA thioesterase family protein
Probab=73.53 E-value=11 Score=34.85 Aligned_cols=52 Identities=8% Similarity=-0.101 Sum_probs=38.6
Q ss_pred EEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEe
Q 040384 96 RVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLI 148 (224)
Q Consensus 96 rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vv 148 (224)
...+++|.++-. --.....+.+|++|++++...+.+++.....+++||++-.
T Consensus 33 ~~~~~~Ge~I~~-~Gd~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~ 84 (413)
T PLN02868 33 PKRYGKGEYVVR-EGEPGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGY 84 (413)
T ss_pred EEEECCCCEEEe-CCCcCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeeh
Confidence 456677766532 2334678999999999998877767666678899999874
No 110
>PF04115 Ureidogly_hydro: Ureidoglycolate hydrolase ; InterPro: IPR007247 Ureidoglycolate hydrolase (3.5.3.19 from EC) carries out the third step in the degradation of allantoin.; GO: 0004848 ureidoglycolate hydrolase activity, 0000256 allantoin catabolic process; PDB: 1YQC_B 1XSR_A 2BDR_B 1XSQ_A.
Probab=72.22 E-value=35 Score=27.72 Aligned_cols=79 Identities=22% Similarity=0.222 Sum_probs=45.8
Q ss_pred cEEEEEEEEeCCc--ccCceecCCCCceEEEEeCeE-EEEEEeCC------CeEEEEEECCCCEEEecCCCeeEEEecCC
Q 040384 91 GISTNRVDLAVGG--INPPHLHPRSSESSIVIRGTV-LVGIITTD------NVFYSKVVTAGMLFLIPRGLVHFQLNVGK 161 (224)
Q Consensus 91 gis~~rv~l~pgg--~~~pH~Hp~a~Ei~yVl~G~~-~v~~v~~~------~~~~~~~l~~GDv~vvP~G~~H~~~N~G~ 161 (224)
++++.|..-.+.- +...=.||..+|.++-+.|+. .+-++.++ .++..+.+..|+-+.+-+|.+|.-.-.=+
T Consensus 56 ~~si~~~~~~~~p~~v~~lERHp~tsQ~fiPl~~~~~~lvvVA~~~~~Pd~~~lrAF~~~~gqgV~~~~GvWH~~~~~l~ 135 (165)
T PF04115_consen 56 GISIFRAQPRELPFEVSMLERHPLTSQAFIPLDGSPWYLVVVAPDDDGPDPETLRAFLAPGGQGVNYHRGVWHHPLLPLD 135 (165)
T ss_dssp EEEEEEEEBE-SSEEEEEEEE-TTB-EEEEESBS---EEEEEEESSSS-ECCCEEEEEE-SS-EEEE-TT-EE-S-EESS
T ss_pred EEEEEEeeccCCccccceeccCCCeeEEEEECCCCccEEEEEcCCCCCCCccceEEEEEcCCEEEEECCCceeCCccccC
Confidence 5566665433322 234567888999999999988 56555543 25678899999999999999999543333
Q ss_pred ccEEEEEE
Q 040384 162 ENVLFFPS 169 (224)
Q Consensus 162 ~~a~~~~~ 169 (224)
++..++.+
T Consensus 136 ~~~~f~vv 143 (165)
T PF04115_consen 136 EPADFLVV 143 (165)
T ss_dssp SEEEEEEE
T ss_pred CcceEEEE
Confidence 55555554
No 111
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=71.83 E-value=33 Score=31.08 Aligned_cols=59 Identities=14% Similarity=0.099 Sum_probs=42.6
Q ss_pred cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEE
Q 040384 91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQL 157 (224)
Q Consensus 91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~ 157 (224)
.+++.+.++..-.-.. + .+...+++|++|++++.. +++ +..|++|+.+.+|....-+..
T Consensus 241 ~F~l~~~~i~~~~~~~-~--~~~~~il~v~eG~~~l~~---~~~--~~~l~~G~s~~ipa~~~~~~i 299 (312)
T COG1482 241 DFALYKWDISGTAEFI-K--QESFSILLVLEGEGTLIG---GGQ--TLKLKKGESFFIPANDGPYTI 299 (312)
T ss_pred ceEEEEEeccChhhhc-c--CCCcEEEEEEcCeEEEec---CCE--EEEEcCCcEEEEEcCCCcEEE
Confidence 6778888777522111 1 136789999999998764 233 789999999999999665553
No 112
>PRK03606 ureidoglycolate hydrolase; Provisional
Probab=70.77 E-value=33 Score=28.02 Aligned_cols=67 Identities=22% Similarity=0.170 Sum_probs=50.6
Q ss_pred cEEEEEEEEe--CCcccCceecCCCCceEEEEeCeEEEEEEeCCC-----eEEEEEECCCCEEEecCCCeeEEE
Q 040384 91 GISTNRVDLA--VGGINPPHLHPRSSESSIVIRGTVLVGIITTDN-----VFYSKVVTAGMLFLIPRGLVHFQL 157 (224)
Q Consensus 91 gis~~rv~l~--pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~-----~~~~~~l~~GDv~vvP~G~~H~~~ 157 (224)
++++.|..-. |=.+...-.||..++.++-+.|+-.+-++.+.+ +...+..+.|+-+.+-+|.+|.-.
T Consensus 55 ~isifr~~~~~~p~~~~~mERHp~~sQafiPl~~~~~lvvVA~~~~~~~~~~raF~~~~~qgV~y~~G~WH~pl 128 (162)
T PRK03606 55 LISIFRAQPRALPLEIRMLERHPLGSQAFIPLNGRPFLVVVAPDGDGDPGTPRAFVTNGRQGVNYHRGVWHHPL 128 (162)
T ss_pred EEEEEeCcccCCCcceeeEEeCCCceEEEEECCCCEEEEEEeCCCCCCccceEEEEecCCcEEEeCCCcccccc
Confidence 5666665422 223445677898999999999998877776542 566789999999999999999754
No 113
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=70.30 E-value=16 Score=28.81 Aligned_cols=65 Identities=14% Similarity=0.285 Sum_probs=47.2
Q ss_pred CCCccccEEEEEEEEeCCcccCceecCCCCceEEEE----eCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEe
Q 040384 85 PGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVI----RGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLN 158 (224)
Q Consensus 85 P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl----~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N 158 (224)
|+++ ++.+.++.|+.|.....- +..|+...+ .|++.+++-++.| ..+++||++-+-.|+.-.+++
T Consensus 12 P~~k--N~~v~fIvl~~g~~tkTk---dg~~v~~~kVaD~TgsI~isvW~e~~----~~~~PGDIirLt~Gy~Si~qg 80 (134)
T KOG3416|consen 12 PGLK--NINVTFIVLEYGRATKTK---DGHEVRSCKVADETGSINISVWDEEG----CLIQPGDIIRLTGGYASIFQG 80 (134)
T ss_pred hhhh--cceEEEEEEeeceeeecc---CCCEEEEEEEecccceEEEEEecCcC----cccCCccEEEecccchhhhcC
Confidence 5666 678888888888766442 445665544 4677777776544 478999999999999877754
No 114
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.25 E-value=18 Score=26.49 Aligned_cols=43 Identities=23% Similarity=0.175 Sum_probs=34.4
Q ss_pred CCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEE
Q 040384 111 PRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQ 156 (224)
Q Consensus 111 p~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~ 156 (224)
..+.|+..|+.|.+.+-+.. ....+...+|+.|-+|...-.-+
T Consensus 39 Ta~~E~Mtvv~Gal~v~lpg---s~dWq~~~~Ge~F~VpgnS~F~l 81 (94)
T COG3123 39 TAAPEEMTVVSGALTVLLPG---SDDWQVYTAGEVFNVPGNSEFDL 81 (94)
T ss_pred cCCceEEEEEeeEEEEEcCC---CcccEEecCCceEEcCCCCeEEE
Confidence 35789999999999988743 33478999999999998765444
No 115
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=68.55 E-value=31 Score=24.05 Aligned_cols=53 Identities=17% Similarity=0.114 Sum_probs=36.2
Q ss_pred EEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCC-eEEEEEECCCCEEEec
Q 040384 96 RVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDN-VFYSKVVTAGMLFLIP 149 (224)
Q Consensus 96 rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~-~~~~~~l~~GDv~vvP 149 (224)
...+.+|-.+ .+-....+.+.+|++|.+.+...+.++ ......+.+||++-..
T Consensus 19 ~~~~~~g~~l-~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~ 72 (120)
T smart00100 19 PVRYPAGEVI-IRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGEL 72 (120)
T ss_pred EEEeCCCCEE-EeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechh
Confidence 4566777654 333334678999999999988765554 3456778899977554
No 116
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=66.93 E-value=23 Score=24.69 Aligned_cols=53 Identities=19% Similarity=0.159 Sum_probs=35.1
Q ss_pred EEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCe-EEEEEECCCCEEEe
Q 040384 95 NRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNV-FYSKVVTAGMLFLI 148 (224)
Q Consensus 95 ~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~-~~~~~l~~GDv~vv 148 (224)
....+++|..+-.. ......+.++++|.+.+...+++|+ .....+.+||++-.
T Consensus 18 ~~~~~~~g~~l~~~-~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~ 71 (115)
T cd00038 18 EERRFPAGEVIIRQ-GDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGE 71 (115)
T ss_pred eeeeeCCCCEEEcC-CCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcCh
Confidence 34567777755222 2234679999999999987766653 44567788887643
No 117
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=66.90 E-value=3.4 Score=24.63 Aligned_cols=30 Identities=10% Similarity=0.120 Sum_probs=24.0
Q ss_pred CCHHHHHhhcCCCHHHHHHHHhccCCCcce
Q 040384 191 IPNEVLTKTFLVGDEVINAIKAAITSAQLG 220 (224)
Q Consensus 191 ~p~evla~af~v~~~~v~~l~~~~~~~~~i 220 (224)
+..+=+|...|++.|+|.++.+.+...++|
T Consensus 3 mtr~diA~~lG~t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 3 MTRQDIADYLGLTRETVSRILKKLERQGLI 32 (32)
T ss_dssp --HHHHHHHHTS-HHHHHHHHHHHHHTTSE
T ss_pred cCHHHHHHHhCCcHHHHHHHHHHHHHcCCC
Confidence 567789999999999999999988887775
No 118
>PHA02984 hypothetical protein; Provisional
Probab=63.75 E-value=48 Score=29.42 Aligned_cols=51 Identities=10% Similarity=0.144 Sum_probs=38.8
Q ss_pred CceEE--EEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEE
Q 040384 114 SESSI--VIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLF 166 (224)
Q Consensus 114 ~Ei~y--Vl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~ 166 (224)
.|-+| +++|+.++.... +++..+..+++||.|.+--+.-|.... ++..+.+
T Consensus 92 nEy~FvlCl~G~~~I~~~~-~~~~is~~I~kGeaf~md~~t~h~i~T-~~knl~L 144 (286)
T PHA02984 92 NEYMFVLCLNGKTSIECFN-KGSKITNTIKKGEAFTLNLKTKYVTTT-KDKNLHL 144 (286)
T ss_pred ccEEEEEEcCCeEEEEEec-CCceeeeEEecCceEEEEccceEEEEe-CCCceEE
Confidence 45554 788999998765 456678999999999999999999863 3444443
No 119
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=61.26 E-value=4.5 Score=36.06 Aligned_cols=19 Identities=26% Similarity=0.501 Sum_probs=17.9
Q ss_pred EEEECCCCEEEecCCCeeE
Q 040384 137 SKVVTAGMLFLIPRGLVHF 155 (224)
Q Consensus 137 ~~~l~~GDv~vvP~G~~H~ 155 (224)
...+++||++++|+|.+|.
T Consensus 152 ~v~v~~Gd~i~ipaGt~HA 170 (302)
T TIGR00218 152 RIKLKPGDFFYVPSGTPHA 170 (302)
T ss_pred ccccCCCCEEEeCCCCccc
Confidence 5789999999999999999
No 120
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=60.42 E-value=81 Score=28.10 Aligned_cols=53 Identities=15% Similarity=0.149 Sum_probs=36.4
Q ss_pred cCCCCce-EEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEe--cCCccEEEE
Q 040384 110 HPRSSES-SIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLN--VGKENVLFF 167 (224)
Q Consensus 110 Hp~a~Ei-~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N--~G~~~a~~~ 167 (224)
.-...|+ ++.+.|++.+.+ +|+ ++.+.+.|.+++|+|...+... ....++.++
T Consensus 70 fl~rrE~giV~lgG~~~V~v---dG~--~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~ 125 (276)
T PRK00924 70 FLERRELGIINIGGAGTVTV---DGE--TYELGHRDALYVGKGAKEVVFASADAANPAKFY 125 (276)
T ss_pred ecCCcEEEEEEccceEEEEE---CCE--EEecCCCcEEEECCCCcEEEEEecCCCCCcEEE
Confidence 3344565 467889999886 455 4569999999999997766553 223456554
No 121
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=60.28 E-value=22 Score=28.46 Aligned_cols=33 Identities=6% Similarity=0.086 Sum_probs=29.1
Q ss_pred CCCHHHHHhhcCCCHHHHHHHHhccCCCcceec
Q 040384 190 PIPNEVLTKTFLVGDEVINAIKAAITSAQLGHR 222 (224)
Q Consensus 190 ~~p~evla~af~v~~~~v~~l~~~~~~~~~i~r 222 (224)
.++.+-||.-.|++.+++.++.+.+...++|..
T Consensus 143 ~~t~~~iA~~lG~tretvsR~l~~l~~~g~I~~ 175 (193)
T TIGR03697 143 RLSHQAIAEAIGSTRVTITRLLGDLRKKKLISI 175 (193)
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEe
Confidence 378999999999999999999998888888753
No 122
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=59.02 E-value=38 Score=30.12 Aligned_cols=46 Identities=9% Similarity=0.060 Sum_probs=37.0
Q ss_pred CceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCcc
Q 040384 114 SESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKEN 163 (224)
Q Consensus 114 ~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~ 163 (224)
.-++++.+|...+.- +++. ...+.++.++++|++..|.+.|...+.
T Consensus 39 ~~li~v~~G~~~i~~--~~g~--~l~i~~p~~~~~p~~~~~~~~~~~~~~ 84 (291)
T PRK15186 39 SVLIKLTTGKISITT--SSGE--YITASGPMLIFLAKDQTIHITMEETHE 84 (291)
T ss_pred eEEEEeccceEEEEe--CCCc--eEEeCCCeEEEEeCCcEEEEEecccCC
Confidence 468999999998764 3343 479999999999999999998876444
No 123
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=57.58 E-value=8.9 Score=34.69 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=19.2
Q ss_pred EEEECCCCEEEecCCCeeEEE
Q 040384 137 SKVVTAGMLFLIPRGLVHFQL 157 (224)
Q Consensus 137 ~~~l~~GDv~vvP~G~~H~~~ 157 (224)
...+++||.+++|+|.+|...
T Consensus 159 ~v~lkpGe~~fl~Agt~HA~~ 179 (312)
T COG1482 159 RVKLKPGEAFFLPAGTPHAYL 179 (312)
T ss_pred EEecCCCCEEEecCCCceeec
Confidence 579999999999999999974
No 124
>PHA02890 hypothetical protein; Provisional
Probab=56.72 E-value=73 Score=28.15 Aligned_cols=44 Identities=18% Similarity=0.183 Sum_probs=36.4
Q ss_pred CceEE--EEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEe
Q 040384 114 SESSI--VIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLN 158 (224)
Q Consensus 114 ~Ei~y--Vl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N 158 (224)
.|.+| +++|+.++.+-. +++..+..+++||.|.+--+.-|.+..
T Consensus 91 nEy~FVlCL~Gs~~In~~~-~d~~iS~~I~kGeaF~mdv~t~H~i~T 136 (278)
T PHA02890 91 IECFFVACIEGSCKINVNI-GDREISDHIHENQGFIMDVGLDHAIDS 136 (278)
T ss_pred ccEEEEEEeCCeEEEEEec-CCceeeeeeecCceEEEEccceEEEEc
Confidence 45554 789999998754 456778999999999999999999865
No 125
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=55.96 E-value=12 Score=25.72 Aligned_cols=33 Identities=9% Similarity=0.036 Sum_probs=29.6
Q ss_pred CCCHHHHHhhcCCCHHHHHHHHhccCCCcceec
Q 040384 190 PIPNEVLTKTFLVGDEVINAIKAAITSAQLGHR 222 (224)
Q Consensus 190 ~~p~evla~af~v~~~~v~~l~~~~~~~~~i~r 222 (224)
++...-||+.+|++..+++++.......+.|.+
T Consensus 22 ~~ta~eLa~~lgl~~~~v~r~L~~L~~~G~V~~ 54 (68)
T smart00550 22 TSTALQLAKNLGLPKKEVNRVLYSLEKKGKVCK 54 (68)
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 399999999999999999999988888888865
No 126
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=55.08 E-value=47 Score=30.48 Aligned_cols=84 Identities=14% Similarity=0.115 Sum_probs=63.2
Q ss_pred CCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCe-EEEEEECCCCEEEe-
Q 040384 71 AFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNV-FYSKVVTAGMLFLI- 148 (224)
Q Consensus 71 ~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~-~~~~~l~~GDv~vv- 148 (224)
..|..+..++... ++.-..+.|++++..-+..-+-.-+...+-.++|..-++.++.++|+ .-...|++||-+.+
T Consensus 250 ~sG~eVlvVd~~G----~tR~~~VGRvKIE~RPL~lIeAe~~g~~~~viLQnaetIrlv~~dG~~vsVt~Lk~GD~VL~~ 325 (344)
T PRK02290 250 RSGDEVLVVDADG----NTREAIVGRVKIEKRPLLLIEAEYGGKRIRTILQNAETIRLVTPDGKPVSVVDLKPGDEVLGY 325 (344)
T ss_pred cCCCEEEEEeCCC----CEEEEEeeEEEEeeccEEEEEEEeCCeEEEEEEecCcEEEEECCCCCEeeeeecCCCCEEEEE
Confidence 3566666665322 23357888999999999888777677899999999999999999886 34579999997754
Q ss_pred -cCCCeeEEEe
Q 040384 149 -PRGLVHFQLN 158 (224)
Q Consensus 149 -P~G~~H~~~N 158 (224)
+.+--|+-.-
T Consensus 326 ~~~~~RHfG~~ 336 (344)
T PRK02290 326 LEEAARHFGMA 336 (344)
T ss_pred ecCCcccccce
Confidence 5666676543
No 127
>COG1741 Pirin-related protein [General function prediction only]
Probab=54.77 E-value=1.6e+02 Score=26.24 Aligned_cols=43 Identities=19% Similarity=0.121 Sum_probs=31.5
Q ss_pred cCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEE
Q 040384 83 EFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVG 127 (224)
Q Consensus 83 ~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~ 127 (224)
..|.-+.. +-...+.+++|+..+.+ -..-.-++||++|++.+.
T Consensus 165 ~~pv~~~~-~~~~dl~l~~g~~~~l~-~~~~~~~l~v~~G~l~v~ 207 (276)
T COG1741 165 SSPVRQDS-LHYVDLRLEAGARLQLP-PAGRRAYLYVIEGTLEVN 207 (276)
T ss_pred ccccccce-eEEEEEEeCCCceEecC-CCCceEEEEEEEeEEEEc
Confidence 45666655 78888899999987776 212346899999988764
No 128
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=54.30 E-value=41 Score=26.71 Aligned_cols=126 Identities=13% Similarity=0.084 Sum_probs=76.4
Q ss_pred EEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCe-EEEEEECCCCEEEecCCCe-----eEEEecCCccEEEE
Q 040384 94 TNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNV-FYSKVVTAGMLFLIPRGLV-----HFQLNVGKENVLFF 167 (224)
Q Consensus 94 ~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~-~~~~~l~~GDv~vvP~G~~-----H~~~N~G~~~a~~~ 167 (224)
.....+++|...-..-- .+..+.+|++|.+.+....++|+ .....+.+||++-...-.. +.... -++..++
T Consensus 23 ~~~~~~~~g~~l~~~g~-~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~~~~~~~~~~~a--~~~~~~~ 99 (214)
T COG0664 23 LEVRKLPKGEVLFTEGE-EADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALLGGDPRSASAVA--LTDVEVL 99 (214)
T ss_pred ceeEeeCCCCEEEcCCC-cCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHhcCCCccceEEE--cceEEEE
Confidence 34455666644433222 34558889999999999887765 3345689999997774332 12222 2234433
Q ss_pred EE--------eeCCCCcceeh----------------------------h------hhhhcC--------CCCCCHHHHH
Q 040384 168 PS--------FNSQLPGTQFV----------------------------H------SSLFNT--------TPPIPNEVLT 197 (224)
Q Consensus 168 ~~--------~~s~~pg~~~~----------------------------~------~~lf~~--------~p~~p~evla 197 (224)
.+ +.. +|..... + ...++. ...++.+.++
T Consensus 100 ~~~~~~~~~~~~~-~p~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ia 178 (214)
T COG0664 100 EIPRKDFLELLAE-SPKLALALLRLLARRLRQALERLSLLARKDVEERLARFLLNLGRRLGIATEDGILIPLPLTHKDLA 178 (214)
T ss_pred EecHHHHHHHHhh-CcHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCCCcEEeccCCHHHHH
Confidence 32 123 4544110 0 111110 0148899999
Q ss_pred hhcCCCHHHHHHHHhccCCCcceecC
Q 040384 198 KTFLVGDEVINAIKAAITSAQLGHRP 223 (224)
Q Consensus 198 ~af~v~~~~v~~l~~~~~~~~~i~r~ 223 (224)
...|++.+.+.++...+...++|...
T Consensus 179 ~~~g~~~~~vsr~l~~l~~~g~i~~~ 204 (214)
T COG0664 179 EYLGLSRETVSRILKELRKDGLISVR 204 (214)
T ss_pred HHhCCchhhHHHHHHHHHhCCcEeeC
Confidence 99999999999999988888877653
No 129
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=54.18 E-value=14 Score=23.22 Aligned_cols=29 Identities=10% Similarity=0.008 Sum_probs=18.4
Q ss_pred CCHHHHHhhcCCCHHHHHHHHhccCCCcc
Q 040384 191 IPNEVLTKTFLVGDEVINAIKAAITSAQL 219 (224)
Q Consensus 191 ~p~evla~af~v~~~~v~~l~~~~~~~~~ 219 (224)
.+..-+|+.+|++..+|.+..+.+.+.|+
T Consensus 18 ~s~~~ia~~lgvs~~Tv~~w~kr~~~~G~ 46 (50)
T PF13384_consen 18 WSIREIAKRLGVSRSTVYRWIKRYREEGL 46 (50)
T ss_dssp --HHHHHHHHTS-HHHHHHHHT-------
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHcccccc
Confidence 78899999999999999999998876653
No 130
>PRK13395 ureidoglycolate hydrolase; Provisional
Probab=53.22 E-value=92 Score=25.70 Aligned_cols=79 Identities=14% Similarity=0.039 Sum_probs=53.3
Q ss_pred cEEEEEEEEe--CCcccCceecCCCCceEEEEeC-eEEEEEEeCCC-----eEEEEEECCCCEEEecCCCeeEEEecCCc
Q 040384 91 GISTNRVDLA--VGGINPPHLHPRSSESSIVIRG-TVLVGIITTDN-----VFYSKVVTAGMLFLIPRGLVHFQLNVGKE 162 (224)
Q Consensus 91 gis~~rv~l~--pgg~~~pH~Hp~a~Ei~yVl~G-~~~v~~v~~~~-----~~~~~~l~~GDv~vvP~G~~H~~~N~G~~ 162 (224)
++++.|..-. |=-+...-.||..++-+.-+.| ...+-++.+++ ....+....|+-+..-+|.+|.-.-.=+.
T Consensus 55 ~isifr~~p~~~p~~i~~mERHp~~sQafiPl~~~~~~lvVvap~~~~~pd~~~aF~~~g~qgV~y~~GtWH~pl~~L~~ 134 (171)
T PRK13395 55 LVSLFRAQPRALPVAITMMERHPLGSQAFIPLAAVSRYAVVVAPAGEFRPDEMRAFLAEGWQGVNYAKGVWHHPLLALDA 134 (171)
T ss_pred EEEEEeccccCCCcceeeEEECCCceEEEEECCCCCCEEEEEccCCCCCCCceEEEEecCCcEEEeCCCcccccccccCC
Confidence 4555554322 2223445678888999998999 77777776532 46678999999999999999996433333
Q ss_pred cEEEEEE
Q 040384 163 NVLFFPS 169 (224)
Q Consensus 163 ~a~~~~~ 169 (224)
+..++.+
T Consensus 135 ~~dF~vv 141 (171)
T PRK13395 135 VSDFVVV 141 (171)
T ss_pred CccEEEE
Confidence 4444443
No 131
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=52.95 E-value=88 Score=27.47 Aligned_cols=65 Identities=15% Similarity=0.146 Sum_probs=41.1
Q ss_pred EEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCC--------CEEEecCCCeeEEEecCC
Q 040384 92 ISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAG--------MLFLIPRGLVHFQLNVGK 161 (224)
Q Consensus 92 is~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~G--------Dv~vvP~G~~H~~~N~G~ 161 (224)
+.+..+.|++|.....-.- +..-.++.++|++++.+ +|+ ....+..- |.+++|+|.---+...++
T Consensus 27 ~~~~~l~L~~g~~~~~~~~-~~E~~vv~l~G~~~v~~---~g~-~~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~~~ 99 (261)
T PF04962_consen 27 MGFGVLRLEAGESLEFELE-RRELGVVNLGGKATVTV---DGE-EFYELGGRESVFDGPPDALYVPRGTKVVIFASTD 99 (261)
T ss_dssp BECCCEEEECCHCCCCCCC-SEEEEEEEESSSEEEEE---TTE-EEEEE-TTSSGGGS--EEEEE-TT--EEEEESST
T ss_pred cceEEEEecCCCEEeccCC-CcEEEEEEeCCEEEEEe---CCc-eEEEecccccccCCCCcEEEeCCCCeEEEEEcCC
Confidence 3455788889887655433 33334467899999987 442 24566665 999999999977776444
No 132
>PRK14585 pgaD putative PGA biosynthesis protein; Provisional
Probab=52.66 E-value=16 Score=29.11 Aligned_cols=25 Identities=8% Similarity=0.208 Sum_probs=22.4
Q ss_pred CCCCHHHHHhhcCCCHHHHHHHHhc
Q 040384 189 PPIPNEVLTKTFLVGDEVINAIKAA 213 (224)
Q Consensus 189 p~~p~evla~af~v~~~~v~~l~~~ 213 (224)
|.++++-+|++|++++|.+++|++.
T Consensus 88 ~~~~~~eLA~Sf~is~el~~qL~~~ 112 (137)
T PRK14585 88 YQYTPQEYAESLAIPDELYQQLQKS 112 (137)
T ss_pred CCCChHHHHHHcCCCHHHHHHHhcC
Confidence 3589999999999999999999864
No 133
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=52.18 E-value=34 Score=28.53 Aligned_cols=122 Identities=15% Similarity=0.077 Sum_probs=70.6
Q ss_pred EEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecC---CCe--eEEEecCCccEEEEEEe
Q 040384 96 RVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPR---GLV--HFQLNVGKENVLFFPSF 170 (224)
Q Consensus 96 rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~---G~~--H~~~N~G~~~a~~~~~~ 170 (224)
...+++|..+. +-....+.+.+|++|.+++.....+++..-..+.+||++-... +.. +.... .++..++. +
T Consensus 32 ~~~~~~ge~l~-~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g~~~~~~~~~~~~~~~A--~~~~~~~~-i 107 (236)
T PRK09392 32 LQRFPPGTMLI-TEGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFILAAVVLDAPYLMSART--LTRSRVLM-I 107 (236)
T ss_pred eeecCCCCEEE-eCCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhhhHHHhCCCCCceEEEE--cCceEEEE-E
Confidence 45666666553 3344567899999999999876545555556788999864321 111 22222 23333332 2
Q ss_pred e--------CCCCccee----------------------------hhhhhh------cC----CCCCCHHHHHhhcCCCH
Q 040384 171 N--------SQLPGTQF----------------------------VHSSLF------NT----TPPIPNEVLTKTFLVGD 204 (224)
Q Consensus 171 ~--------s~~pg~~~----------------------------~~~~lf------~~----~p~~p~evla~af~v~~ 204 (224)
+ .++|.... ++..+. +. .-.+..+-+|..+|++.
T Consensus 108 ~~~~~~~l~~~~p~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Rla~~Ll~~~~~~~~~~~~~i~~t~~~iA~~lG~tr 187 (236)
T PRK09392 108 PAELVREAMSEDPGFMRAVVFELAGCYRGLVKSLKNQKLRSSAERLANYLLKQSLRQGGADVVTLPYEKRVLASYLGMTP 187 (236)
T ss_pred eHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHhccccCCCcEEEeeCCHHHHHHHhCCCh
Confidence 2 12333210 112222 10 00134577999999999
Q ss_pred HHHHHHHhccCCCccee
Q 040384 205 EVINAIKAAITSAQLGH 221 (224)
Q Consensus 205 ~~v~~l~~~~~~~~~i~ 221 (224)
+++.++.+.+.+.+++.
T Consensus 188 etvsR~l~~L~~~gl~~ 204 (236)
T PRK09392 188 ENLSRAFAALASHGVHV 204 (236)
T ss_pred hHHHHHHHHHHhCCeEe
Confidence 99999888888777654
No 134
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=51.95 E-value=16 Score=34.07 Aligned_cols=23 Identities=13% Similarity=0.093 Sum_probs=20.0
Q ss_pred EEEEEECCCCEEEecCCCeeEEE
Q 040384 135 FYSKVVTAGMLFLIPRGLVHFQL 157 (224)
Q Consensus 135 ~~~~~l~~GDv~vvP~G~~H~~~ 157 (224)
+....|++||.+++|+|.+|...
T Consensus 236 LN~v~l~pGeaifipAg~~HAyl 258 (389)
T PRK15131 236 LNVVKLNPGEAMFLFAETPHAYL 258 (389)
T ss_pred eeEEEeCCCCEEEeCCCCCeEEc
Confidence 34579999999999999999973
No 135
>KOG4281 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.05 E-value=7.3 Score=33.42 Aligned_cols=43 Identities=23% Similarity=0.226 Sum_probs=36.0
Q ss_pred ccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEe
Q 040384 88 NTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIIT 130 (224)
Q Consensus 88 ~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~ 130 (224)
++-++|+....+.+++++|.|-||.=+-+.=++-|+..+--.|
T Consensus 71 EcD~FSigiFclp~ss~IPLHdHPgM~v~sKllyGtmhVksyD 113 (236)
T KOG4281|consen 71 ECDRFSIGIFCLPPSSVIPLHDHPGMTVLSKLLYGTMHVKSYD 113 (236)
T ss_pred ecCceeEEEEEcCCCCeeecCCCcchHHHHHhhhceeEeeecc
Confidence 3457899999999999999999998777777889998876543
No 136
>PRK10202 ebgC cryptic beta-D-galactosidase subunit beta; Reviewed
Probab=51.00 E-value=39 Score=27.01 Aligned_cols=52 Identities=12% Similarity=-0.015 Sum_probs=37.5
Q ss_pred CceecCCCCceEEEEeCeEEEEEEeCCC------------------eEEEEEECCCCEEEecCCCeeEEE
Q 040384 106 PPHLHPRSSESSIVIRGTVLVGIITTDN------------------VFYSKVVTAGMLFLIPRGLVHFQL 157 (224)
Q Consensus 106 ~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~------------------~~~~~~l~~GDv~vvP~G~~H~~~ 157 (224)
.+=.|.+--.+-|+++|+=.+++..... ......|++|+..++.++.+|.-.
T Consensus 58 ~~E~Hr~YiDIq~~l~G~E~i~~~~~~~~~~~~~y~~e~D~~f~~~~~~~v~l~~G~F~iffP~daH~P~ 127 (149)
T PRK10202 58 LFTGHRRYFEVHYYLQGQQKIEYAPKETLQVVEYYRDETDREYLKGCGETVEVHEGQIVICDIHEAYRFI 127 (149)
T ss_pred cccccccEEEEEEEEeCeEEEEEEEcccCccccccCcccCeeeccCCCcEEEeCCCeEEEECCcccccCC
Confidence 4456767778999999998888754321 111467888888888888888864
No 137
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=50.25 E-value=28 Score=32.35 Aligned_cols=65 Identities=25% Similarity=0.306 Sum_probs=46.2
Q ss_pred EEEEeC-CcccCce---ecCCCCceEEEEeCeEEEEEEeCCC-------------------------eEEEEEECCCCEE
Q 040384 96 RVDLAV-GGINPPH---LHPRSSESSIVIRGTVLVGIITTDN-------------------------VFYSKVVTAGMLF 146 (224)
Q Consensus 96 rv~l~p-gg~~~pH---~Hp~a~Ei~yVl~G~~~v~~v~~~~-------------------------~~~~~~l~~GDv~ 146 (224)
.+.+.| |...+.| +| +.-+...+-|.=+--+..++. ......=++|+++
T Consensus 201 Fvy~Gp~gSwtp~HaDVf~--s~swS~nicG~KrWl~~pP~qe~~l~dr~gnlp~~~~~~~ld~~~~~~lei~Qepge~V 278 (427)
T KOG2131|consen 201 FVYAGPAGSWTPFHADVFH--SPSWSVNICGRKRWLLYPPEQEQTLADRYGNLPLPSWITKLDLFRGPLLEIFQEPGETV 278 (427)
T ss_pred EEEeccCCCCCccchhhhc--CCcceeeeecceeEEEeChHHhhhhhhhccCcCCccccccccccccchhhhhccCCcee
Confidence 345554 5567778 77 456778888876666666542 1112344799999
Q ss_pred EecCCCeeEEEecCCc
Q 040384 147 LIPRGLVHFQLNVGKE 162 (224)
Q Consensus 147 vvP~G~~H~~~N~G~~ 162 (224)
++|.|.-|-+.|.+++
T Consensus 279 FvPsGW~hQV~NL~dT 294 (427)
T KOG2131|consen 279 FVPSGWHHQVLNLGDT 294 (427)
T ss_pred eccCccccccccccce
Confidence 9999999999999986
No 138
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=48.52 E-value=67 Score=29.62 Aligned_cols=85 Identities=13% Similarity=0.152 Sum_probs=63.4
Q ss_pred CCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeE-EEEEECCCCEEEe-
Q 040384 71 AFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVF-YSKVVTAGMLFLI- 148 (224)
Q Consensus 71 ~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~-~~~~l~~GDv~vv- 148 (224)
..|.++..++... ++.-+.+.|++++..-+..-+-..+..++-.++|..-.+.++.++|+. -...|++||-+..
T Consensus 260 ~sG~~VlvVd~~G----~tR~~~VGRvKIE~RPLllIeA~~~g~~~svilQnaetIRlv~p~G~~vsVt~Lk~GD~vL~~ 335 (354)
T PF01959_consen 260 RSGDEVLVVDADG----RTRTAIVGRVKIERRPLLLIEAEADGKRISVILQNAETIRLVGPDGEPVSVTELKPGDEVLVY 335 (354)
T ss_pred cCCCEEEEEeCCC----CEEEEEeeEEEEeecceEEEEEEeCCeEEEEEEecCcEEEEECCCCCEeeeeecCCCCEEEEE
Confidence 3556666655321 233578889999999988877776888999999999999999998873 3579999997754
Q ss_pred -cCCCeeEEEec
Q 040384 149 -PRGLVHFQLNV 159 (224)
Q Consensus 149 -P~G~~H~~~N~ 159 (224)
..+--|+-+-.
T Consensus 336 ~~~~~RHfG~~I 347 (354)
T PF01959_consen 336 LEEAGRHFGMKI 347 (354)
T ss_pred ecCCCcccceEe
Confidence 66667775443
No 139
>PF13994 PgaD: PgaD-like protein
Probab=47.90 E-value=23 Score=27.88 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=21.3
Q ss_pred CCHHHHHhhcCCCHHHHHHHHhc
Q 040384 191 IPNEVLTKTFLVGDEVINAIKAA 213 (224)
Q Consensus 191 ~p~evla~af~v~~~~v~~l~~~ 213 (224)
.+++=+|++|++++++++++++.
T Consensus 101 ~~~~elA~~f~l~~~~l~~lr~~ 123 (138)
T PF13994_consen 101 VSDEELARSFGLSPEQLQQLRQA 123 (138)
T ss_pred CCHHHHHHHcCCCHHHHHHHHhC
Confidence 88999999999999999999864
No 140
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=47.06 E-value=45 Score=22.33 Aligned_cols=31 Identities=16% Similarity=0.160 Sum_probs=21.8
Q ss_pred EEEEEeCCCeEEEEEECCCCEEEecCCCeeE
Q 040384 125 LVGIITTDNVFYSKVVTAGMLFLIPRGLVHF 155 (224)
Q Consensus 125 ~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~ 155 (224)
++++.|+-++.++..|++|..|.--+|.++.
T Consensus 11 rVQlTD~Kgr~~Ti~L~~G~~fhThrG~i~H 41 (54)
T PF14801_consen 11 RVQLTDPKGRKHTITLEPGGEFHTHRGAIRH 41 (54)
T ss_dssp EEEEEETT--EEEEE--TT-EEEETTEEEEH
T ss_pred EEEEccCCCCeeeEEECCCCeEEcCccccch
Confidence 6888898899999999999999888886643
No 141
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=46.72 E-value=24 Score=28.68 Aligned_cols=24 Identities=21% Similarity=0.479 Sum_probs=22.0
Q ss_pred CCCHHHHHhhcCCCHHHHHHHHhc
Q 040384 190 PIPNEVLTKTFLVGDEVINAIKAA 213 (224)
Q Consensus 190 ~~p~evla~af~v~~~~v~~l~~~ 213 (224)
.+++|=+|++|+++++.++++++.
T Consensus 98 ~l~~dElA~sF~l~~e~i~qLr~~ 121 (153)
T PRK14584 98 DLDDDELASSFALSPELIAQLKSG 121 (153)
T ss_pred CCChHHHHHHcCCCHHHHHHHHhC
Confidence 489999999999999999999874
No 142
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=46.71 E-value=54 Score=23.37 Aligned_cols=63 Identities=17% Similarity=0.221 Sum_probs=36.2
Q ss_pred EEEeCCcccCceecC---CCCceEEE--Ee-Ce-----EEEEEEeC---CCeEEEEE-----ECCCCEEEecC-CCeeEE
Q 040384 97 VDLAVGGINPPHLHP---RSSESSIV--IR-GT-----VLVGIITT---DNVFYSKV-----VTAGMLFLIPR-GLVHFQ 156 (224)
Q Consensus 97 v~l~pgg~~~pH~Hp---~a~Ei~yV--l~-G~-----~~v~~v~~---~~~~~~~~-----l~~GDv~vvP~-G~~H~~ 156 (224)
....+|+...||+.. ....+.++ ++ .. +...+... ++...... .++|++++++. ...|..
T Consensus 4 ~~y~~G~~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~~~~~~~~~p~~g~~v~F~~~~~~H~v 83 (100)
T PF13640_consen 4 NRYPPGGFFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSREVEDFDIVPKPGRLVIFPSDNSLHGV 83 (100)
T ss_dssp EEEETTEEEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCEEEGGGSEE-BTTEEEEEESCTCEEEE
T ss_pred EEECcCCEEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccccCCCcceEEEeccccCCCCEEEEEeCCCCeecC
Confidence 345889999999975 22222223 33 22 33334331 11111222 88999999999 999998
Q ss_pred Eec
Q 040384 157 LNV 159 (224)
Q Consensus 157 ~N~ 159 (224)
.-.
T Consensus 84 ~~v 86 (100)
T PF13640_consen 84 TPV 86 (100)
T ss_dssp EEE
T ss_pred ccc
Confidence 765
No 143
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=45.08 E-value=1e+02 Score=21.33 Aligned_cols=48 Identities=17% Similarity=0.223 Sum_probs=33.1
Q ss_pred EEeCeEEEEEEeCCC-eEEEEEECCCCEEEecCCCeeEEEecCCccEEEE
Q 040384 119 VIRGTVLVGIITTDN-VFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFF 167 (224)
Q Consensus 119 Vl~G~~~v~~v~~~~-~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~ 167 (224)
-..|+..+.+.+.+| .++...+++||..-++.+..-. ...|+-.++-+
T Consensus 4 ~a~~~sWv~V~d~dG~~~~~~~l~~G~~~~~~~~~~~~-i~iGna~~v~v 52 (77)
T PF13464_consen 4 TATGDSWVEVTDADGKVLFSGTLKAGETKTFEGKEPFR-IRIGNAGAVEV 52 (77)
T ss_pred EEeCCeEEEEEeCCCcEeeeeeeCCCcEEEEeCCCCEE-EEEeCCCcEEE
Confidence 345788888886666 6788999999999995544433 35665554433
No 144
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=45.05 E-value=27 Score=22.87 Aligned_cols=33 Identities=12% Similarity=0.208 Sum_probs=29.0
Q ss_pred CCCHHHHHhhcCCCHHHHHHHHhccCCCcceec
Q 040384 190 PIPNEVLTKTFLVGDEVINAIKAAITSAQLGHR 222 (224)
Q Consensus 190 ~~p~evla~af~v~~~~v~~l~~~~~~~~~i~r 222 (224)
.++..-+++.++++.+++.++.+.+.+.++|.+
T Consensus 25 ~~s~~ela~~~g~s~~tv~r~l~~L~~~g~i~~ 57 (67)
T cd00092 25 PLTRQEIADYLGLTRETVSRTLKELEEEGLISR 57 (67)
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 488999999999999999999888888888765
No 145
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=44.20 E-value=37 Score=24.83 Aligned_cols=55 Identities=16% Similarity=0.063 Sum_probs=29.6
Q ss_pred CCcccCceecCCCCceEEEEe-CeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEe
Q 040384 101 VGGINPPHLHPRSSESSIVIR-GTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLN 158 (224)
Q Consensus 101 pgg~~~pH~Hp~a~Ei~yVl~-G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N 158 (224)
.+|+..|-.+........|++ |.++.. .+|+.....++.||.+++|...--.+..
T Consensus 21 ~~GiiLp~~~~~~~~~G~VvaVG~G~~~---~~g~~~~~~vk~GD~Vl~~~~~g~~v~~ 76 (93)
T PF00166_consen 21 ASGIILPESAKEKPNQGKVVAVGPGRYN---ENGEEVPMDVKVGDKVLFPKYAGTEVKF 76 (93)
T ss_dssp TTSCCE-CCSSSSEEEEEEEEE-SEEET---TTSSEEETSS-TTSEEEEETTTSEEEEE
T ss_pred cceEEeccccccccceeEEEEcCCcccc---CCCcEeeeeeeeccEEeccccCceEEEE
Confidence 356666633322222233333 554433 3455556789999999999987555544
No 146
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=42.82 E-value=21 Score=22.24 Aligned_cols=33 Identities=15% Similarity=0.223 Sum_probs=26.4
Q ss_pred CCCCCHHHHHhhcCCCHHHHHHHHhccCCCcce
Q 040384 188 TPPIPNEVLTKTFLVGDEVINAIKAAITSAQLG 220 (224)
Q Consensus 188 ~p~~p~evla~af~v~~~~v~~l~~~~~~~~~i 220 (224)
+|+++..-+|+.++++...+.+..+...+.++|
T Consensus 15 ~~~~t~~ela~~~~is~~tv~~~l~~L~~~g~I 47 (48)
T PF13412_consen 15 NPRITQKELAEKLGISRSTVNRYLKKLEEKGLI 47 (48)
T ss_dssp CTTS-HHHHHHHHTS-HHHHHHHHHHHHHTTSE
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHHCcCc
Confidence 577999999999999999999988777666665
No 147
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=42.79 E-value=19 Score=24.55 Aligned_cols=31 Identities=13% Similarity=0.203 Sum_probs=28.3
Q ss_pred CCHHHHHhhcCCCHHHHHHHHhccCCCccee
Q 040384 191 IPNEVLTKTFLVGDEVINAIKAAITSAQLGH 221 (224)
Q Consensus 191 ~p~evla~af~v~~~~v~~l~~~~~~~~~i~ 221 (224)
++.+.+|...|++.+++.++.+.+...++|-
T Consensus 29 lt~~~iA~~~g~sr~tv~r~l~~l~~~g~I~ 59 (76)
T PF13545_consen 29 LTQEEIADMLGVSRETVSRILKRLKDEGIIE 59 (76)
T ss_dssp SSHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 8899999999999999999999888888774
No 148
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=42.57 E-value=19 Score=23.74 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=29.0
Q ss_pred CCCHHHHHhhcCCCHHHHHHHHhccCCCcceecC
Q 040384 190 PIPNEVLTKTFLVGDEVINAIKAAITSAQLGHRP 223 (224)
Q Consensus 190 ~~p~evla~af~v~~~~v~~l~~~~~~~~~i~r~ 223 (224)
.+..+=|++.|+++++++++=.......+.|.|.
T Consensus 14 ~~s~~ela~~~~VS~~TiRRDl~~L~~~g~i~r~ 47 (57)
T PF08220_consen 14 KVSVKELAEEFGVSEMTIRRDLNKLEKQGLIKRT 47 (57)
T ss_pred CEEHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 4778889999999999999988888888887764
No 149
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=40.31 E-value=33 Score=20.79 Aligned_cols=32 Identities=9% Similarity=0.142 Sum_probs=27.9
Q ss_pred CCHHHHHhhcCCCHHHHHHHHhccCCCcceec
Q 040384 191 IPNEVLTKTFLVGDEVINAIKAAITSAQLGHR 222 (224)
Q Consensus 191 ~p~evla~af~v~~~~v~~l~~~~~~~~~i~r 222 (224)
++..-+++.++++...+.+..+.+...++|.+
T Consensus 9 ~s~~~la~~l~~s~~tv~~~l~~L~~~g~l~~ 40 (48)
T smart00419 9 LTRQEIAELLGLTRETVSRTLKRLEKEGLISR 40 (48)
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
Confidence 67788999999999999999888888888764
No 150
>PF02787 CPSase_L_D3: Carbamoyl-phosphate synthetase large chain, oligomerisation domain; InterPro: IPR005480 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the oligomerisation domain found in the large subunit of carbamoyl phosphate synthases as well as in certain other carboxy phsophate domain-containing enzymes.; GO: 0006807 nitrogen compound metabolic process; PDB: 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A 1KEE_G 1CE8_A 1JDB_H ....
Probab=39.35 E-value=29 Score=26.93 Aligned_cols=27 Identities=7% Similarity=0.206 Sum_probs=20.5
Q ss_pred CCCHHHHHhhcCCCHHHHHHHHhccCC
Q 040384 190 PIPNEVLTKTFLVGDEVINAIKAAITS 216 (224)
Q Consensus 190 ~~p~evla~af~v~~~~v~~l~~~~~~ 216 (224)
||++..+|+.+++++++|++++...+=
T Consensus 72 GFsD~~IA~l~~~~e~~vr~~R~~~~i 98 (123)
T PF02787_consen 72 GFSDRQIARLWGVSEEEVRELRKEHGI 98 (123)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHHHHT-
T ss_pred CCCHHHHHhccCCCHHHHHHHHHHcCC
Confidence 499999999999999999999876543
No 151
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=38.20 E-value=1.3e+02 Score=22.09 Aligned_cols=25 Identities=12% Similarity=-0.145 Sum_probs=18.7
Q ss_pred CCeEEEEEECCCCEEEecCCCeeEE
Q 040384 132 DNVFYSKVVTAGMLFLIPRGLVHFQ 156 (224)
Q Consensus 132 ~~~~~~~~l~~GDv~vvP~G~~H~~ 156 (224)
+|+.....++.||.+++++..--.+
T Consensus 51 ~G~~~~~~vk~GD~Vlf~~~~g~ev 75 (95)
T PRK00364 51 NGERVPLDVKVGDKVLFGKYAGTEV 75 (95)
T ss_pred CCCEeecccCCCCEEEEcCCCCeEE
Confidence 4566677899999999997654434
No 152
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=38.20 E-value=32 Score=25.18 Aligned_cols=34 Identities=6% Similarity=0.101 Sum_probs=30.5
Q ss_pred CCCHHHHHhhcCCCHHHHHHHHhccCCCcceecC
Q 040384 190 PIPNEVLTKTFLVGDEVINAIKAAITSAQLGHRP 223 (224)
Q Consensus 190 ~~p~evla~af~v~~~~v~~l~~~~~~~~~i~r~ 223 (224)
.++..-||+-.+++.++|.+..+.....++|.|.
T Consensus 47 ~is~~eLa~~~g~sr~tVsr~L~~Le~~GlI~r~ 80 (95)
T TIGR01610 47 RVTATVIAELTGLSRTHVSDAIKSLARRRIIFRQ 80 (95)
T ss_pred ccCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeee
Confidence 5889999999999999999998888888888864
No 153
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=37.46 E-value=36 Score=20.90 Aligned_cols=33 Identities=18% Similarity=0.121 Sum_probs=28.0
Q ss_pred CCCHHHHHhhcCCCHHHHHHHHhccCCCcceec
Q 040384 190 PIPNEVLTKTFLVGDEVINAIKAAITSAQLGHR 222 (224)
Q Consensus 190 ~~p~evla~af~v~~~~v~~l~~~~~~~~~i~r 222 (224)
+++..-+++.|+++..++.+....+...++|.+
T Consensus 14 ~~s~~~l~~~l~~s~~tv~~~l~~L~~~g~i~~ 46 (53)
T smart00420 14 KVSVEELAELLGVSEMTIRRDLNKLEEQGLLTR 46 (53)
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
Confidence 478889999999999999998888777777765
No 154
>TIGR00022 uncharacterized protein, YhcH/YjgK/YiaL family. This family consists of conserved hypothetical proteins, about 150 amino acids in length. Members with limited information include YhcH, a possible sugar isomerase of sialic acid catabolism, and YjgK.
Probab=35.06 E-value=1e+02 Score=24.18 Aligned_cols=27 Identities=22% Similarity=0.333 Sum_probs=20.4
Q ss_pred ccCceecCCCCceEEEEeCeEEEEEEe
Q 040384 104 INPPHLHPRSSESSIVIRGTVLVGIIT 130 (224)
Q Consensus 104 ~~~pH~Hp~a~Ei~yVl~G~~~v~~v~ 130 (224)
-..+=.|.+---+-|+++|+=++++..
T Consensus 60 ~~~~E~Hr~YiDIq~~l~G~E~i~~~~ 86 (142)
T TIGR00022 60 SKKAELHHRYLDIQLLLRGEENIEVGT 86 (142)
T ss_pred hcchhhhhheEEEEEeecceEEEEEec
Confidence 344556766778999999998888853
No 155
>PF01456 Mucin: Mucin-like glycoprotein; InterPro: IPR000458 This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated []. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells.
Probab=35.00 E-value=28 Score=27.14 Aligned_cols=19 Identities=37% Similarity=0.628 Sum_probs=15.2
Q ss_pred CchhhhHHHHHHHHHhhhh
Q 040384 1 MISSRLLCCLTALLILPLS 19 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (224)
|..-+|||+|+|+.|-+..
T Consensus 1 MmtcRLLCalLvlaLcCCp 19 (143)
T PF01456_consen 1 MMTCRLLCALLVLALCCCP 19 (143)
T ss_pred CchHHHHHHHHHHHHHcCc
Confidence 7778999999988776553
No 156
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=34.79 E-value=72 Score=30.78 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=26.2
Q ss_pred CCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEE
Q 040384 113 SSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLF 146 (224)
Q Consensus 113 a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~ 146 (224)
+.|+.+|.+|.+. +++++|...-.+|++|++|
T Consensus 348 gkEMyIVk~G~L~--Vv~dDg~t~~~~L~~G~~F 379 (536)
T KOG0500|consen 348 GKEMYIVKEGKLA--VVADDGVTVFVTLKAGSVF 379 (536)
T ss_pred cceEEEEEccEEE--EEecCCcEEEEEecCCcee
Confidence 6899999999976 4566776667899999887
No 157
>PF04074 DUF386: Domain of unknown function (DUF386); InterPro: IPR004375 This family consists of conserved hypothetical proteins, about 150 amino acids in length, with no known function. The family is restricted to the bacteria. It includes three members in Escherichia coli (strain K12) and three in Streptococcus pneumoniae.; PDB: 1S4C_B 1JOP_B.
Probab=33.48 E-value=94 Score=24.60 Aligned_cols=53 Identities=11% Similarity=0.032 Sum_probs=32.3
Q ss_pred ccCceecCCCCceEEEEeCeEEEEEE-eCCC--------------------eEEEEEECCCCEEEecCCCeeEE
Q 040384 104 INPPHLHPRSSESSIVIRGTVLVGII-TTDN--------------------VFYSKVVTAGMLFLIPRGLVHFQ 156 (224)
Q Consensus 104 ~~~pH~Hp~a~Ei~yVl~G~~~v~~v-~~~~--------------------~~~~~~l~~GDv~vvP~G~~H~~ 156 (224)
-..+=.|.+--.+-|+++|+=++++. +.++ ......|++|+++++-++-+|.-
T Consensus 60 ~~~~E~HrkyiDiq~~l~G~E~i~~~~~~~~~~~~~~yd~~~D~~f~~~~~~~~~i~l~~g~f~iffP~d~H~p 133 (153)
T PF04074_consen 60 ERRFESHRKYIDIQYVLEGEERIGWSADIEDLEVVQPYDEEKDIAFYEDGKNESFITLKPGDFAIFFPEDAHRP 133 (153)
T ss_dssp GS-EEE-SSEEEEEEEEES-EEEEEE-S---GGGS---BTTTTBEEES--TTEEEEEE-TTEEEEE-TT--EEE
T ss_pred ccceeeeccEEEEEeeccccEEEEEEcCcccCcccccCCCCCCEEEecCCCCceEEEEcCCEEEEECCCccccc
Confidence 34456777777899999999888883 3221 01135799999999999999994
No 158
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=33.42 E-value=41 Score=21.22 Aligned_cols=32 Identities=13% Similarity=0.192 Sum_probs=26.4
Q ss_pred C-CHHHHHhhcCCCHHHHHHHHhccCCCcceec
Q 040384 191 I-PNEVLTKTFLVGDEVINAIKAAITSAQLGHR 222 (224)
Q Consensus 191 ~-p~evla~af~v~~~~v~~l~~~~~~~~~i~r 222 (224)
+ +..-|++.|+++...+++......+.++|.+
T Consensus 20 l~s~~~la~~~~vs~~tv~~~l~~L~~~g~i~~ 52 (60)
T smart00345 20 LPSERELAAQLGVSRTTVREALSRLEAEGLVQR 52 (60)
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
Confidence 5 5778999999999999998887777777743
No 159
>COG3542 Uncharacterized conserved protein [Function unknown]
Probab=33.08 E-value=2.7e+02 Score=22.70 Aligned_cols=58 Identities=16% Similarity=0.087 Sum_probs=39.8
Q ss_pred EEEEEEEeCCcccCceecCC-CCceEEEEeCe-EEEEEEeCCCeEEEE----EECCCCE--EEecCCCe
Q 040384 93 STNRVDLAVGGINPPHLHPR-SSESSIVIRGT-VLVGIITTDNVFYSK----VVTAGML--FLIPRGLV 153 (224)
Q Consensus 93 s~~rv~l~pgg~~~pH~Hp~-a~Ei~yVl~G~-~~v~~v~~~~~~~~~----~l~~GDv--~vvP~G~~ 153 (224)
+....-|+++. .-|||.. +.|+.+...|. +.+.++. +|+.... .+++|++ .+||.|..
T Consensus 45 T~IYyLLe~~~--~s~~HRv~a~eiwHf~ag~pl~~~l~~-dG~~~s~~LG~d~~~Ge~~Q~vVP~g~w 110 (162)
T COG3542 45 TAIYYLLEEDN--ISAWHRVTADEIWHFYAGAPLELHLSE-DGGAESFTLGPDLEKGERPQYVVPAGTW 110 (162)
T ss_pred EEEEEEecCCc--cchheecchhheEEEecCCceEEEEEe-CCCeEEEEecccccCCceeEEEEeCCcE
Confidence 34445567777 4577755 89999988874 7777776 6665544 5577776 57899954
No 160
>COG0234 GroS Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]
Probab=32.89 E-value=1.4e+02 Score=22.40 Aligned_cols=57 Identities=19% Similarity=0.147 Sum_probs=34.1
Q ss_pred eCCcccCceecCCCCceEEEEeCeEEE-E--EEeCCCeEEEEEECCCCEEEecCCCeeEEEecCC
Q 040384 100 AVGGINPPHLHPRSSESSIVIRGTVLV-G--IITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGK 161 (224)
Q Consensus 100 ~pgg~~~pH~Hp~a~Ei~yVl~G~~~v-~--~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~ 161 (224)
..||++.|-++..-+ .+|++.+ | -.+.+++.....++.||.++|.+..---....|.
T Consensus 21 T~gGIvlpdsakeK~-----~~g~VvAVG~G~~~~~g~~~~~~VkvGD~Vlf~ky~G~evk~dge 80 (96)
T COG0234 21 TAGGIVLPDSAKEKP-----QEGEVVAVGPGRRDENGELVPLDVKVGDRVLFGKYAGTEVKIDGE 80 (96)
T ss_pred ccCcEEecCccccCC-----cceEEEEEccceecCCCCEeccccccCCEEEECccCCcEEEECCE
Confidence 357777776553322 2333221 1 1233456677899999999999987755554443
No 161
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=32.70 E-value=44 Score=24.38 Aligned_cols=35 Identities=9% Similarity=0.021 Sum_probs=29.5
Q ss_pred CCCCCHHHHHhhcCCCHHHHHHHHhccCCCcceec
Q 040384 188 TPPIPNEVLTKTFLVGDEVINAIKAAITSAQLGHR 222 (224)
Q Consensus 188 ~p~~p~evla~af~v~~~~v~~l~~~~~~~~~i~r 222 (224)
++..+..-|++.+++++.++.+......+.++|.|
T Consensus 15 ~~~~~~~~la~~l~~s~~tv~~~l~~L~~~g~i~~ 49 (108)
T smart00344 15 DARISLAELAKKVGLSPSTVHNRVKRLEEEGVIKG 49 (108)
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeec
Confidence 34588999999999999999998888877777764
No 162
>COG2731 EbgC Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]
Probab=32.35 E-value=1.1e+02 Score=24.82 Aligned_cols=59 Identities=14% Similarity=0.087 Sum_probs=42.1
Q ss_pred CCcccCceecCCCCceEEEEeCeEEEEEEeCCC-e-------------------EEEEEECCCCEEEecCCCeeEEEec
Q 040384 101 VGGINPPHLHPRSSESSIVIRGTVLVGIITTDN-V-------------------FYSKVVTAGMLFLIPRGLVHFQLNV 159 (224)
Q Consensus 101 pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~-~-------------------~~~~~l~~GDv~vvP~G~~H~~~N~ 159 (224)
+.....+-+|.+--.+-++++|+=.+++....+ + ....+|++|+..++=+|.+|.-.-.
T Consensus 57 ~~~~~~~E~HrkYiDiqill~G~E~i~~s~~~~~~~~e~y~~e~Di~~~~~~~~e~~v~L~~G~faiFfP~e~H~P~c~ 135 (154)
T COG2731 57 EAEEKKFELHRKYIDIQILLKGQEGIEYSPKETAQVKEDYDEEKDIIFYKGIEDESTVELNPGMFAIFFPGEPHRPGCN 135 (154)
T ss_pred chhhcchhhhhheEEEEEEEeceeeeEEccCcCCccccccccccCEEeecCCccceEEEeCCCCEEEECCCCccccccc
Confidence 333445666777789999999998888765432 1 1246889999999999999885433
No 163
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=31.17 E-value=48 Score=26.72 Aligned_cols=10 Identities=30% Similarity=0.295 Sum_probs=7.3
Q ss_pred CCHHHHHhhc
Q 040384 191 IPNEVLTKTF 200 (224)
Q Consensus 191 ~p~evla~af 200 (224)
+.++.+++.+
T Consensus 161 ~tretvsR~l 170 (202)
T PRK13918 161 SVRETVTKVI 170 (202)
T ss_pred ccHHHHHHHH
Confidence 7888888644
No 164
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=30.96 E-value=3.4e+02 Score=23.84 Aligned_cols=82 Identities=12% Similarity=0.061 Sum_probs=50.9
Q ss_pred EEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCC----C-eEEEEEECCCCEEEecC
Q 040384 76 VTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTD----N-VFYSKVVTAGMLFLIPR 150 (224)
Q Consensus 76 ~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~----~-~~~~~~l~~GDv~vvP~ 150 (224)
+..++ .+-++.... .+..++|.+|....--.- +-.-++.+++|++.+..-+.. | |.-.+.=++=|.+++|.
T Consensus 16 v~~vt-p~sagw~YV--GF~~~~L~~Ges~~~~~~-~~E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~vYvp~ 91 (270)
T COG3718 16 VQDVT-PESAGWEYV--GFRLLRLAAGESATEETG-DRERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSVYVPA 91 (270)
T ss_pred eEEec-CCCCCceeE--EEEEEEccCCCcccccCC-CceEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeEEecC
Confidence 44443 233455543 455567889988776555 334566788999998754321 2 22223445669999999
Q ss_pred CCeeEEEecCC
Q 040384 151 GLVHFQLNVGK 161 (224)
Q Consensus 151 G~~H~~~N~G~ 161 (224)
|....+...++
T Consensus 92 g~~~~vtA~t~ 102 (270)
T COG3718 92 GSAFSVTATTD 102 (270)
T ss_pred CceEEEEeecc
Confidence 99977765543
No 165
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=30.65 E-value=1.5e+02 Score=21.73 Aligned_cols=25 Identities=16% Similarity=0.003 Sum_probs=18.3
Q ss_pred CCeEEEEEECCCCEEEecCCCeeEE
Q 040384 132 DNVFYSKVVTAGMLFLIPRGLVHFQ 156 (224)
Q Consensus 132 ~~~~~~~~l~~GDv~vvP~G~~H~~ 156 (224)
+|+.....++.||.+++|....-.+
T Consensus 50 ~g~~~~~~vk~GD~Vl~~~~~g~~v 74 (93)
T cd00320 50 NGERVPLSVKVGDKVLFPKYAGTEV 74 (93)
T ss_pred CCCCccccccCCCEEEECCCCceEE
Confidence 3455567899999999998654334
No 166
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=30.40 E-value=58 Score=20.93 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=26.8
Q ss_pred CC-HHHHHhhcCCCHHHHHHHHhccCCCcceec
Q 040384 191 IP-NEVLTKTFLVGDEVINAIKAAITSAQLGHR 222 (224)
Q Consensus 191 ~p-~evla~af~v~~~~v~~l~~~~~~~~~i~r 222 (224)
++ .+-|++.|+++.+.+.+..+...+.++|.+
T Consensus 25 ~~~~~~la~~~~is~~~v~~~l~~L~~~G~i~~ 57 (66)
T cd07377 25 LPSERELAEELGVSRTTVREALRELEAEGLVER 57 (66)
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 45 778999999999999998888888887753
No 167
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=30.20 E-value=48 Score=22.34 Aligned_cols=27 Identities=11% Similarity=0.263 Sum_probs=19.3
Q ss_pred hhhcCCCCCCHHHHHhhcCCCHHHHHHHHhc
Q 040384 183 SLFNTTPPIPNEVLTKTFLVGDEVINAIKAA 213 (224)
Q Consensus 183 ~lf~~~p~~p~evla~af~v~~~~v~~l~~~ 213 (224)
.-+|+ .+..|.+.+|++++++++|++.
T Consensus 40 ~~yGs----~e~Yl~~~lgl~~~~i~~Lr~~ 66 (68)
T PF13348_consen 40 ERYGS----VENYLREELGLSEEDIERLRER 66 (68)
T ss_dssp HHHSS----HHHHHHHT-T--HHHHHHHHHH
T ss_pred HHcCC----HHHHHHHcCCCCHHHHHHHHHH
Confidence 34564 5778999999999999999875
No 168
>PF13730 HTH_36: Helix-turn-helix domain
Probab=29.43 E-value=46 Score=21.20 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=24.7
Q ss_pred CHHHHHhhcCCCHHHHHHHHhccCCCcce
Q 040384 192 PNEVLTKTFLVGDEVINAIKAAITSAQLG 220 (224)
Q Consensus 192 p~evla~af~v~~~~v~~l~~~~~~~~~i 220 (224)
+.+-||+.+|++..+|++..+...+.|+|
T Consensus 27 S~~~la~~~g~s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 27 SQETLAKDLGVSRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCcCC
Confidence 57899999999999999988877776654
No 169
>KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=29.22 E-value=47 Score=30.42 Aligned_cols=76 Identities=16% Similarity=0.292 Sum_probs=54.8
Q ss_pred ccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCC--eE------------------------
Q 040384 82 HEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDN--VF------------------------ 135 (224)
Q Consensus 82 ~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~--~~------------------------ 135 (224)
-.+|..+.-++......-+.|.+.+.|.-|. .-++.=+.|+.++.+..+.. .+
T Consensus 240 c~~~~f~~~~v~~~~w~GpaGtV~pih~dp~-hNi~~qv~G~k~i~l~~p~~s~~lyP~d~~~~~tsqvdvenPdlk~fp 318 (355)
T KOG2132|consen 240 CSFPNFENEVVDINAWIGPAGTVLPIHMDPW-HNILSQVFGRKRIRLYPPEDSGALYPTDTYLLETSQVDVENPDLKAFP 318 (355)
T ss_pred eecCCCCccccceeEEeccCCceeccccccc-cceeeeeecceEEEEecCcccCCCCCccchhhcccccccCCCChhhhh
Confidence 3455555445666666666788999898776 67888888998888875531 11
Q ss_pred -------EEEEECCCCEEEecCCCeeEEEe
Q 040384 136 -------YSKVVTAGMLFLIPRGLVHFQLN 158 (224)
Q Consensus 136 -------~~~~l~~GDv~vvP~G~~H~~~N 158 (224)
....|++||++.+|+-..|+...
T Consensus 319 ~~~k~~~l~~lL~pGe~L~iP~kwwhyvrs 348 (355)
T KOG2132|consen 319 KFAKARFLDCLLEPGEALFIPPKWWHYVRS 348 (355)
T ss_pred HHHHHHHHHHhcCCchhccccHHHhhhhhh
Confidence 12578899999999999999854
No 170
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=28.48 E-value=43 Score=22.80 Aligned_cols=32 Identities=13% Similarity=0.219 Sum_probs=25.1
Q ss_pred CCHHHHHhhcCCCHHHHHHHHhccCCCcceec
Q 040384 191 IPNEVLTKTFLVGDEVINAIKAAITSAQLGHR 222 (224)
Q Consensus 191 ~p~evla~af~v~~~~v~~l~~~~~~~~~i~r 222 (224)
++-.-||+.|+++++.++.+....-..|-|.+
T Consensus 15 ~S~~eLa~~~~~s~~~ve~mL~~l~~kG~I~~ 46 (69)
T PF09012_consen 15 VSLAELAREFGISPEAVEAMLEQLIRKGYIRK 46 (69)
T ss_dssp EEHHHHHHHTT--HHHHHHHHHHHHCCTSCEE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 67788999999999999999988777776654
No 171
>KOG1633 consensus F-box protein JEMMA and related proteins with JmjC, PHD, F-box and LRR domains [Chromatin structure and dynamics]
Probab=28.21 E-value=65 Score=32.86 Aligned_cols=76 Identities=18% Similarity=0.188 Sum_probs=44.2
Q ss_pred EEEEeCCcccC-ceecCCCCceEEEEeCeEEEEEEeC----------------CCeEEEEEECCCCEEEecCCCeeEEEe
Q 040384 96 RVDLAVGGINP-PHLHPRSSESSIVIRGTVLVGIITT----------------DNVFYSKVVTAGMLFLIPRGLVHFQLN 158 (224)
Q Consensus 96 rv~l~pgg~~~-pH~Hp~a~Ei~yVl~G~~~v~~v~~----------------~~~~~~~~l~~GDv~vvP~G~~H~~~N 158 (224)
...+.+||-.. -|.+ ....++|.+.++..---..+ -.+-+.-.|++|+.++||.|++|..+-
T Consensus 140 dfhidfggtsvwyhil-~G~K~f~lI~pt~~nl~~ye~w~~s~~q~~~ffGd~VdkC~~~~l~~g~T~~iPsGwIhAV~T 218 (776)
T KOG1633|consen 140 DFHIDFGGTSVWYHIL-AGEKTFYLIPPTCENLELYECWESSTPQDEIFFGDCVDKCYKCILKQGQTLFIPSGWIHAVLT 218 (776)
T ss_pred ccccCCCCcchhhhhh-ccccceeeeCCcccchhhhhhhhhcccccccccCCccceeEEEEeccCceEecccceeEeeec
Confidence 34455666443 4666 44566666666532111110 012345789999999999999999986
Q ss_pred cCCccEEEEEEeeC
Q 040384 159 VGKENVLFFPSFNS 172 (224)
Q Consensus 159 ~G~~~a~~~~~~~s 172 (224)
.-+.-+...-++.+
T Consensus 219 p~d~l~fgGnflhs 232 (776)
T KOG1633|consen 219 PTDCLVFGGNFLHS 232 (776)
T ss_pred Ccchheeccchhhh
Confidence 65543333334433
No 172
>PHA00675 hypothetical protein
Probab=26.80 E-value=65 Score=23.17 Aligned_cols=33 Identities=21% Similarity=0.195 Sum_probs=25.7
Q ss_pred CCCHHHHHhhcCCCHHHHHHHHhccCCCcceec
Q 040384 190 PIPNEVLTKTFLVGDEVINAIKAAITSAQLGHR 222 (224)
Q Consensus 190 ~~p~evla~af~v~~~~v~~l~~~~~~~~~i~r 222 (224)
+.+...||+-|+++..+|.+++....=.-.++|
T Consensus 39 G~s~~~IA~~fGVsrstV~~I~~gk~W~~~~~~ 71 (78)
T PHA00675 39 GMSYAVLAEKFEQSKGAIAKICRYERRGQFAVR 71 (78)
T ss_pred CccHHHHHHHhCCCHHHHHHHHccchhhheeee
Confidence 367779999999999999999976554444444
No 173
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=26.64 E-value=77 Score=19.68 Aligned_cols=29 Identities=14% Similarity=0.186 Sum_probs=21.0
Q ss_pred hhhcCCCCCCHHHHHhhcCCCHHHHHHHHhc
Q 040384 183 SLFNTTPPIPNEVLTKTFLVGDEVINAIKAA 213 (224)
Q Consensus 183 ~lf~~~p~~p~evla~af~v~~~~v~~l~~~ 213 (224)
.++.. +++..-+|+.|+++..+|-+.+..
T Consensus 16 ~l~~~--G~si~~IA~~~gvsr~TvyR~l~~ 44 (45)
T PF02796_consen 16 ELYAE--GMSIAEIAKQFGVSRSTVYRYLNK 44 (45)
T ss_dssp HHHHT--T--HHHHHHHTTS-HHHHHHHHCC
T ss_pred HHHHC--CCCHHHHHHHHCcCHHHHHHHHhc
Confidence 35555 599999999999999999998754
No 174
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=25.60 E-value=1.2e+02 Score=30.82 Aligned_cols=52 Identities=12% Similarity=0.010 Sum_probs=32.9
Q ss_pred EEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEE
Q 040384 94 TNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLF 146 (224)
Q Consensus 94 ~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~ 146 (224)
+....+.||-.+-.-=. .+.++.+|++|++.+...+.+.+..-..+++||+|
T Consensus 397 ~~~~~~~pge~I~~qge-~~~~lY~I~~G~V~i~~~~~~~e~~l~~l~~Gd~F 448 (823)
T PLN03192 397 MKAEYIPPREDVIMQNE-APDDVYIVVSGEVEIIDSEGEKERVVGTLGCGDIF 448 (823)
T ss_pred hheeeeCCCCEEEECCC-CCceEEEEEecEEEEEEecCCcceeeEEccCCCEe
Confidence 33456777765433222 35689999999998854222223345689999988
No 175
>PF06413 Neugrin: Neugrin; InterPro: IPR010487 This family contains mouse and human neugrin proteins. Neugrin and m-neugrin are mainly expressed in neurons in the nervous system, and are thought to play an important role in the process of neuronal differentiation []. Homologues of neugrin are found in fungi suggesting they have a alternative role or more than one function.
Probab=25.17 E-value=78 Score=27.27 Aligned_cols=26 Identities=27% Similarity=0.259 Sum_probs=21.2
Q ss_pred CCHHHHHhhcCCCHHHHHHHHh-ccCC
Q 040384 191 IPNEVLTKTFLVGDEVINAIKA-AITS 216 (224)
Q Consensus 191 ~p~evla~af~v~~~~v~~l~~-~~~~ 216 (224)
...+.||..|.++++.|++|.+ .+.+
T Consensus 30 ~t~~~Lae~F~vspe~irrILkskw~p 56 (225)
T PF06413_consen 30 WTVERLAESFKVSPEAIRRILKSKWVP 56 (225)
T ss_pred cCHHHHHhhCCCCHHHHHHHHhcCCCC
Confidence 6778999999999999999854 4433
No 176
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=25.14 E-value=3.4e+02 Score=21.35 Aligned_cols=51 Identities=18% Similarity=0.087 Sum_probs=37.6
Q ss_pred CCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEe---cCCccEEEEE
Q 040384 113 SSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLN---VGKENVLFFP 168 (224)
Q Consensus 113 a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N---~G~~~a~~~~ 168 (224)
..-+.+|+||+=++.+. ++ .+...+|+.++.+..++-...- ..++|...+.
T Consensus 23 ~p~i~~vlQG~K~~~~g---~~--~~~Y~~g~~lv~~~~lPv~~~v~~AS~~~P~l~l~ 76 (155)
T PF06719_consen 23 EPSICIVLQGSKRVHLG---DQ--VFEYDAGQYLVSSVDLPVESEVVEASPEEPYLALS 76 (155)
T ss_pred CCeEEEEEeeeEEEEEC---Cc--eEEecCCcEEEecCCCcEEEEEeeccCCCCEEEEE
Confidence 35799999999888772 33 6899999999999998866543 2355655443
No 177
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=24.85 E-value=65 Score=25.31 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=35.3
Q ss_pred hhhhcCCCCCCHHHHHhhcCCCHHHHHHHHhccCCCcceecCC
Q 040384 182 SSLFNTTPPIPNEVLTKTFLVGDEVINAIKAAITSAQLGHRPK 224 (224)
Q Consensus 182 ~~lf~~~p~~p~evla~af~v~~~~v~~l~~~~~~~~~i~r~~ 224 (224)
..|+..+.++..|-||...+.+..++.|-.++.-..|+|.|-|
T Consensus 34 ~~LL~~~~~~tvdelae~lnr~rStv~rsl~~L~~~GlV~Rek 76 (126)
T COG3355 34 KALLEENGPLTVDELAEILNRSRSTVYRSLQNLLEAGLVEREK 76 (126)
T ss_pred HHHHhhcCCcCHHHHHHHHCccHHHHHHHHHHHHHcCCeeeee
Confidence 4455334469999999999999999999999988889988754
No 178
>PLN02288 mannose-6-phosphate isomerase
Probab=24.06 E-value=52 Score=30.75 Aligned_cols=21 Identities=14% Similarity=0.083 Sum_probs=19.0
Q ss_pred EEEECCCCEEEecCCCeeEEE
Q 040384 137 SKVVTAGMLFLIPRGLVHFQL 157 (224)
Q Consensus 137 ~~~l~~GDv~vvP~G~~H~~~ 157 (224)
...|++||.+++|+|.+|...
T Consensus 252 ~v~L~PGeaifl~ag~~HAYl 272 (394)
T PLN02288 252 YVKLNPGEALYLGANEPHAYL 272 (394)
T ss_pred eEecCCCCEEEecCCCCceec
Confidence 479999999999999999964
No 179
>PF13613 HTH_Tnp_4: Helix-turn-helix of DDE superfamily endonuclease
Probab=23.59 E-value=84 Score=20.22 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=20.5
Q ss_pred CCHHHHHhhcCCCHHHHHHHHhc
Q 040384 191 IPNEVLTKTFLVGDEVINAIKAA 213 (224)
Q Consensus 191 ~p~evla~af~v~~~~v~~l~~~ 213 (224)
.+.+.||.-||+++.++.++...
T Consensus 20 ~~~~~La~~FgIs~stvsri~~~ 42 (53)
T PF13613_consen 20 LTFQDLAYRFGISQSTVSRIFHE 42 (53)
T ss_pred CcHhHHhhheeecHHHHHHHHHH
Confidence 88999999999999999988653
No 180
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=22.96 E-value=54 Score=29.63 Aligned_cols=41 Identities=22% Similarity=0.434 Sum_probs=29.0
Q ss_pred eecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCC
Q 040384 108 HLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRG 151 (224)
Q Consensus 108 H~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G 151 (224)
|+||+ .-|...+....+++.++.-..+.+-++||.+++=-.
T Consensus 131 hthpd---~~y~vl~v~i~gl~~~e~Ii~s~~Ak~GD~lI~~~d 171 (324)
T COG2144 131 HTHPD---TPYCVLDVVIGGLIAEEPIITSGTAKPGDLLIFVGD 171 (324)
T ss_pred ccCCC---CCCceeeeEEecccccccccccCCCCcCCEEEEEec
Confidence 99976 445677777788777654333568899999987544
No 181
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=22.42 E-value=1.3e+02 Score=30.53 Aligned_cols=48 Identities=15% Similarity=0.225 Sum_probs=30.9
Q ss_pred EeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEE
Q 040384 99 LAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFL 147 (224)
Q Consensus 99 l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~v 147 (224)
+.||..+...=.+ -+|+.+|++|++.+--.+.++......|++||++=
T Consensus 447 f~pge~iireGd~-v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~G 494 (727)
T KOG0498|consen 447 FTPGEYIIREGDP-VTDMYFIVRGSLESITTDGGGFFVVAILGPGDFFG 494 (727)
T ss_pred cCCCCeEEecCCc-cceeEEEEeeeEEEEEccCCceEEEEEecCCCccc
Confidence 3444444333332 47999999999976543323344578999999984
No 182
>PF13518 HTH_28: Helix-turn-helix domain
Probab=22.41 E-value=87 Score=19.33 Aligned_cols=28 Identities=4% Similarity=0.014 Sum_probs=24.0
Q ss_pred CCHHHHHhhcCCCHHHHHHHHhccCCCc
Q 040384 191 IPNEVLTKTFLVGDEVINAIKAAITSAQ 218 (224)
Q Consensus 191 ~p~evla~af~v~~~~v~~l~~~~~~~~ 218 (224)
.+..-+|+.|+++..++.+....+.+.|
T Consensus 13 ~s~~~~a~~~gis~~tv~~w~~~y~~~G 40 (52)
T PF13518_consen 13 ESVREIAREFGISRSTVYRWIKRYREGG 40 (52)
T ss_pred CCHHHHHHHHCCCHhHHHHHHHHHHhcC
Confidence 6888899999999999999987776654
No 183
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=22.11 E-value=92 Score=24.72 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=28.4
Q ss_pred CCceEEEEeCeEEEEEEeCCCeEE-EEEECCCCEEEe
Q 040384 113 SSESSIVIRGTVLVGIITTDNVFY-SKVVTAGMLFLI 148 (224)
Q Consensus 113 a~Ei~yVl~G~~~v~~v~~~~~~~-~~~l~~GDv~vv 148 (224)
.+.+.+|++|.+++...+++|+.. -..+.+||++-.
T Consensus 11 ~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~ 47 (193)
T TIGR03697 11 AEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGV 47 (193)
T ss_pred CCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeee
Confidence 467889999999999888877533 567899998743
No 184
>PF14545 DBB: Dof, BCAP, and BANK (DBB) motif,
Probab=22.10 E-value=4.2e+02 Score=21.23 Aligned_cols=71 Identities=17% Similarity=0.231 Sum_probs=39.2
Q ss_pred EEEEECCCCEEEecCCCeeEEEecCC-ccEEEEEEeeCCCCcceehhhhhhcCCCCCCHHHHHhhcCCCH---HHHHHHH
Q 040384 136 YSKVVTAGMLFLIPRGLVHFQLNVGK-ENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTKTFLVGD---EVINAIK 211 (224)
Q Consensus 136 ~~~~l~~GDv~vvP~G~~H~~~N~G~-~~a~~~~~~~s~~pg~~~~~~~lf~~~p~~p~evla~af~v~~---~~v~~l~ 211 (224)
++..+++=|.+.-|+|.++-..-.+. .-+..-..+-+..-. + ..+|+.- .=|-|.+.++|++.+ |+++++.
T Consensus 51 yt~~~~aPd~~~~pag~V~v~v~~~g~~~~~~~ikyys~~~e---l-~~lL~~~-~~PvefmCQa~~i~p~~~E~LD~~L 125 (142)
T PF14545_consen 51 YTLQFKAPDFCLEPAGSVNVRVYCDGVSLGTRQIKYYSRMRE---L-EQLLRKA-ANPVEFMCQAFGISPNDREELDNLL 125 (142)
T ss_pred EEEEEECchhcCCCCceEEEEEEECCEEEEEEeEEEEecHHH---H-HHHHHhc-CChhhhhhhhcCCCCCCHHHHHHHH
Confidence 46678888999999999877532221 111111111122111 1 2233310 268899999999754 6665553
No 185
>smart00351 PAX Paired Box domain.
Probab=21.83 E-value=78 Score=24.31 Aligned_cols=32 Identities=6% Similarity=0.016 Sum_probs=27.3
Q ss_pred CCCHHHHHhhcCCCHHHHHHHHhccCCCccee
Q 040384 190 PIPNEVLTKTFLVGDEVINAIKAAITSAQLGH 221 (224)
Q Consensus 190 ~~p~evla~af~v~~~~v~~l~~~~~~~~~i~ 221 (224)
+.+..-+|+.|+++..+|.++.+.+.+.+.+.
T Consensus 33 G~s~~~iA~~~gvs~~tV~kwi~r~~~~G~~~ 64 (125)
T smart00351 33 GVRPCDISRQLCVSHGCVSKILGRYYETGSIR 64 (125)
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcC
Confidence 48899999999999999999988887766543
No 186
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=21.60 E-value=1.1e+02 Score=18.75 Aligned_cols=21 Identities=19% Similarity=0.455 Sum_probs=15.4
Q ss_pred CCCHHHHHhhcC-CCHHHHHHH
Q 040384 190 PIPNEVLTKTFL-VGDEVINAI 210 (224)
Q Consensus 190 ~~p~evla~af~-v~~~~v~~l 210 (224)
.+|+|++.+.|. ++.+++.++
T Consensus 3 ~LP~Eil~~If~~L~~~dl~~~ 24 (47)
T PF12937_consen 3 SLPDEILLEIFSYLDPRDLLRL 24 (47)
T ss_dssp CS-HHHHHHHHTTS-HHHHHHH
T ss_pred HhHHHHHHHHHhcCCHHHHHHH
Confidence 399999999998 788877665
No 187
>PF09923 DUF2155: Uncharacterized protein conserved in bacteria (DUF2155); InterPro: IPR019225 This entry contains various hypothetical prokaryotic proteins that have no known function.
Probab=21.39 E-value=3.4e+02 Score=19.90 Aligned_cols=58 Identities=14% Similarity=0.205 Sum_probs=29.2
Q ss_pred CeEEEEEECCCCEEEecCCCeeEEE-----e--cCCccEEEEEEeeCCCCcce-ehhhhhhcCCCCCC
Q 040384 133 NVFYSKVVTAGMLFLIPRGLVHFQL-----N--VGKENVLFFPSFNSQLPGTQ-FVHSSLFNTTPPIP 192 (224)
Q Consensus 133 ~~~~~~~l~~GDv~vvP~G~~H~~~-----N--~G~~~a~~~~~~~s~~pg~~-~~~~~lf~~~p~~p 192 (224)
++....+++.|+...+ |.++-.. . .++.+...++.+...+.+.. ...+|+|++.|++.
T Consensus 11 g~~~~~~v~~G~~~~~--g~L~i~~~~C~~r~p~~~p~~~Af~~v~~~~~~~~~iF~GWMfassPal~ 76 (90)
T PF09923_consen 11 GRVTDFEVPVGETVQF--GNLTITLRACVSRPPTENPDTDAFVQVTIREQGKREIFSGWMFASSPALN 76 (90)
T ss_pred CeEEEEEEcCCCEEEE--ccEEEEhhheecCCCCCCcCccceEEEEEcCCCccccEeeeEEecCcccc
Confidence 5666677777777666 2222210 0 11112222333333333333 66789999877654
No 188
>PHA00672 hypothetical protein
Probab=21.32 E-value=4.2e+02 Score=21.02 Aligned_cols=66 Identities=11% Similarity=0.111 Sum_probs=49.2
Q ss_pred ccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCc
Q 040384 90 QGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKE 162 (224)
Q Consensus 90 ~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~ 162 (224)
.|+-+..+.++.|-...--.| +- +-+++.+|.+.+.. ++. ..+|+.=.++.-|+|--...+.-.++
T Consensus 45 ~GvYARei~IPkGt~LtG~~h-kf-~~~ii~sG~itV~t---dge--~~rl~g~~~i~~~aG~KragyAHeDT 110 (152)
T PHA00672 45 AGVYARTIRIPAGVALTGALI-KV-STVLIFSGHATVFI---GGE--AVELRGYHVIPASAGRKQAFVAHADT 110 (152)
T ss_pred cceeEEEEeccCceeeeeeee-Ee-eEEEEecccEEEEe---CCc--EEEEecceeeecCCCcccceeeeccc
Confidence 388889999999998887788 43 34499999998864 233 56788878888888877666554444
No 189
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=21.31 E-value=1.3e+02 Score=19.03 Aligned_cols=30 Identities=13% Similarity=0.091 Sum_probs=21.3
Q ss_pred cccCceecCCCC--ceEEEEeCeEEEEEEeCC
Q 040384 103 GINPPHLHPRSS--ESSIVIRGTVLVGIITTD 132 (224)
Q Consensus 103 g~~~pH~Hp~a~--Ei~yVl~G~~~v~~v~~~ 132 (224)
+++..+..|+.. +++...|...+++++|..
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 344445555444 899999999999998853
No 190
>PF01987 AIM24: Mitochondrial biogenesis AIM24; InterPro: IPR002838 The proteins in this family have no known function.; PDB: 1PG6_A 1YOX_D.
Probab=20.96 E-value=1.6e+02 Score=24.36 Aligned_cols=43 Identities=12% Similarity=0.048 Sum_probs=33.3
Q ss_pred ceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEe
Q 040384 115 ESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLN 158 (224)
Q Consensus 115 Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N 158 (224)
-+..-++|++.+-+.. .|..+...|.+||-+++..+.+-.+..
T Consensus 131 ~~~~~l~G~G~v~l~~-~G~i~~i~L~~ge~~~Vd~~~lVA~~~ 173 (215)
T PF01987_consen 131 LFMLKLSGRGTVFLSG-YGAIYEIDLAPGEEIIVDPGHLVAWSG 173 (215)
T ss_dssp EEEEEEESSCEEEEEE-CCSEEEEEEE-EEEEEEEGGGEEEEET
T ss_pred cEEEEEEEEEEEEEEe-CCcEEEEEccCCceEEEcCCCEEEECC
Confidence 3445788999887655 578889999999999999998877743
No 191
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=20.90 E-value=53 Score=21.19 Aligned_cols=32 Identities=13% Similarity=0.223 Sum_probs=27.5
Q ss_pred CCHHHHHhhcCCCHHHHHHHHhccCCCcceec
Q 040384 191 IPNEVLTKTFLVGDEVINAIKAAITSAQLGHR 222 (224)
Q Consensus 191 ~p~evla~af~v~~~~v~~l~~~~~~~~~i~r 222 (224)
+...-|++.++++...+.++.+...+.++|.|
T Consensus 22 ~t~~~la~~l~~~~~~vs~~v~~L~~~Glv~r 53 (62)
T PF12802_consen 22 LTQSELAERLGISKSTVSRIVKRLEKKGLVER 53 (62)
T ss_dssp EEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 77889999999999999999988888888865
No 192
>PF12071 DUF3551: Protein of unknown function (DUF3551); InterPro: IPR021937 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 79 to 104 amino acids in length. This protein has a single completely conserved residue C that may be functionally important.
Probab=20.37 E-value=1.8e+02 Score=20.96 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=10.4
Q ss_pred hhhhhcccCCCCCcc--eeec
Q 040384 16 LPLSSNAADPDPLQD--ICIA 34 (224)
Q Consensus 16 ~~~~~~~~d~~~~~d--~cva 34 (224)
+++.+.++.|..-.| +|.-
T Consensus 15 ~~~~~~~~~pA~A~dyp~Clq 35 (82)
T PF12071_consen 15 AALLALAAAPAQARDYPYCLQ 35 (82)
T ss_pred HHHHhccccchhhcCCcEEEe
Confidence 333334555555566 7985
No 193
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator). This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.
Probab=20.30 E-value=1e+02 Score=23.32 Aligned_cols=33 Identities=12% Similarity=0.182 Sum_probs=29.3
Q ss_pred CCCHHHHHhhcCCCHHHHHHHHhccCCCcceec
Q 040384 190 PIPNEVLTKTFLVGDEVINAIKAAITSAQLGHR 222 (224)
Q Consensus 190 ~~p~evla~af~v~~~~v~~l~~~~~~~~~i~r 222 (224)
.++.+-|++.++++...++++.+.....++|.+
T Consensus 25 ~~s~~eia~~~~i~~~~v~~il~~L~~~gli~~ 57 (132)
T TIGR00738 25 PVSVKEIAERQGISRSYLEKILRTLRRAGLVES 57 (132)
T ss_pred cCcHHHHHHHHCcCHHHHHHHHHHHHHCCcEEe
Confidence 588899999999999999999998888888764
No 194
>COG2188 PhnF Transcriptional regulators [Transcription]
Probab=20.13 E-value=79 Score=26.90 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=27.3
Q ss_pred CCHH-HHHhhcCCCHHHHHHHHhccCCCcceecC
Q 040384 191 IPNE-VLTKTFLVGDEVINAIKAAITSAQLGHRP 223 (224)
Q Consensus 191 ~p~e-vla~af~v~~~~v~~l~~~~~~~~~i~r~ 223 (224)
+|.| -|++.|++|..+|+|-.+.....|+|.|-
T Consensus 31 LPsE~eLa~~f~VSR~TvRkAL~~L~~eGli~r~ 64 (236)
T COG2188 31 LPSERELAEQFGVSRMTVRKALDELVEEGLIVRR 64 (236)
T ss_pred CCCHHHHHHHHCCcHHHHHHHHHHHHHCCcEEEE
Confidence 5544 69999999999999998888888887763
No 195
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=20.12 E-value=71 Score=23.72 Aligned_cols=6 Identities=50% Similarity=0.401 Sum_probs=2.5
Q ss_pred hHHHHH
Q 040384 6 LLCCLT 11 (224)
Q Consensus 6 ~~~~~~ 11 (224)
||..|+
T Consensus 7 llL~l~ 12 (95)
T PF07172_consen 7 LLLGLL 12 (95)
T ss_pred HHHHHH
Confidence 444444
Done!