BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040385
         (827 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|224089911|ref|XP_002308863.1| predicted protein [Populus trichocarpa]
 gi|222854839|gb|EEE92386.1| predicted protein [Populus trichocarpa]
          Length = 951

 Score = 1288 bits (3333), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 635/883 (71%), Positives = 711/883 (80%), Gaps = 61/883 (6%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           WWQHWIDYVNQ+Q N T DGSS+LE  N    S+S+RP+ IDNSDL++DA +E+   G E
Sbjct: 50  WWQHWIDYVNQEQTNVTNDGSSMLE--NCDAVSSSRRPASIDNSDLIHDANSEESNVGFE 107

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVM 120
           I DTLLEGRDYILLPQEVWNQL+SWYGGGP LARKVISSGLSQTE AVEVYPLRL+L VM
Sbjct: 108 IHDTLLEGRDYILLPQEVWNQLYSWYGGGPALARKVISSGLSQTEYAVEVYPLRLRLFVM 167

Query: 121 PRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANI 180
           P+G+ STIRISKKETIGELH+RAC +F LNLEQ+CIWDYYG RKHALMNDMDRTLDDAN+
Sbjct: 168 PKGDQSTIRISKKETIGELHKRACELFDLNLEQVCIWDYYGQRKHALMNDMDRTLDDANL 227

Query: 181 QMDQDILVEVLDNVNGTNCKS---SIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGT 237
           QMDQDILVEV +N NGT       S Q NG   K+ASS L+EPSKSSLSIAGG SAS+G 
Sbjct: 228 QMDQDILVEVHNNANGTALSRFIRSAQGNGSTVKEASSFLLEPSKSSLSIAGGLSASRGA 287

Query: 238 SRNHSSEISTSPNLAS-ARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVH 296
           SR  S+E+S S NL S  R+ DNT G S VTTRG+S GL GL NLGNTCFMNSAIQCLVH
Sbjct: 288 SRGGSTELSQSLNLTSQGRELDNTYGISTVTTRGSSGGLIGLQNLGNTCFMNSAIQCLVH 347

Query: 297 TPEFARYFREDYRREINWQNPLGMV----------------------------------- 321
           T EFA+YFREDY +EINWQNPLGMV                                   
Sbjct: 348 TSEFAKYFREDYHQEINWQNPLGMVGELALAFGELLRRLWAPGRTAIAPRQFKMKLARFA 407

Query: 322 ------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARN 369
                       ELLAFLLDGLHEDLNRVKHKPY KSKDADGRPDEEVADEYWANHIARN
Sbjct: 408 PQFSGYNQHDSQELLAFLLDGLHEDLNRVKHKPYKKSKDADGRPDEEVADEYWANHIARN 467

Query: 370 DSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPS 429
           DSIIVDVCQGQYKSTLVCP C+K+SVTFDPFMYLSLPLQ+TTTR+MTVT+FT DGSALP 
Sbjct: 468 DSIIVDVCQGQYKSTLVCPECHKISVTFDPFMYLSLPLQSTTTRSMTVTIFTCDGSALPF 527

Query: 430 TYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDH 489
           + TVTVPK GRCRDLI  L + CSLK +E+LK+AE++NH  QRFL+DPLISLS IKDDDH
Sbjct: 528 SCTVTVPKQGRCRDLINALSSACSLKNNEDLKLAEVRNHLFQRFLEDPLISLSMIKDDDH 587

Query: 490 LAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQS 549
           L AY++PK +KK + ++LIHR QEQE GA Q    WK +GTPLVS ISRD+VI+ G IQ+
Sbjct: 588 LVAYKIPKSLKKTLLIRLIHRRQEQEMGATQAAQHWKPFGTPLVSLISRDEVITRGDIQT 647

Query: 550 TVQRMLSPFLKKESLMHADSFDP-----SSMVTTVDPSGEAHSNSSSNIAKEDASSSKAV 604
            V  MLSP L+ ESL  AD+ +P     +S       SGEA SNS S+   +D +   AV
Sbjct: 648 VVNTMLSPLLRSESLRQADTSEPFLSLAASEKRRDSSSGEACSNSMSDSVNKDGN---AV 704

Query: 605 TLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLE 664
           TL  LPLQLV+ESN C DLSV  DK I++ S+STS++VYVDWS++LLEKY+TH+LENL E
Sbjct: 705 TLFKLPLQLVEESNACVDLSVGEDKAIKLSSTSTSVLVYVDWSRELLEKYDTHYLENLPE 764

Query: 665 VFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEV 724
           VFK GPV KKARTEPLSLYTCLEAFLREEPLVPEDMWYCP+CKERRQASKKLDLWRLPEV
Sbjct: 765 VFKYGPVNKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPKCKERRQASKKLDLWRLPEV 824

Query: 725 LVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGS 784
           LVIHLKRFS+SRSMKHKLETFVNFPIHDF+LTKY+ANKN+++RQLYELYALTNHYGGMGS
Sbjct: 825 LVIHLKRFSFSRSMKHKLETFVNFPIHDFDLTKYIANKNNTQRQLYELYALTNHYGGMGS 884

Query: 785 GHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           GHYTAHIKLLDENRWYNFDD+HISPINE+DVKSAAAYVLFYRR
Sbjct: 885 GHYTAHIKLLDENRWYNFDDTHISPINEEDVKSAAAYVLFYRR 927


>gi|296088825|emb|CBI38283.3| unnamed protein product [Vitis vinifera]
          Length = 955

 Score = 1259 bits (3257), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 640/884 (72%), Positives = 709/884 (80%), Gaps = 58/884 (6%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           WWQ W++YVNQDQ NN  D SSL EH +S  SS  KRPS IDNSDL+ D T+ED   G E
Sbjct: 48  WWQQWLEYVNQDQANNI-DVSSLSEHCDSVSSSDVKRPSVIDNSDLIYDMTSEDSTMGIE 106

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVM 120
           + DTL+EGRDYILLPQEVWNQL++WYGGGPTL RKVI+SGLSQT L+VEVYPLRLQL+V+
Sbjct: 107 LHDTLVEGRDYILLPQEVWNQLYAWYGGGPTLPRKVINSGLSQTGLSVEVYPLRLQLVVV 166

Query: 121 PRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANI 180
           P+G  STIRISKKETIGELHRRAC IF LN+EQ+CIWDYYGHRKHALMNDMD+TLDDANI
Sbjct: 167 PKGAHSTIRISKKETIGELHRRACEIFDLNMEQVCIWDYYGHRKHALMNDMDKTLDDANI 226

Query: 181 QMDQDILVEVLDNVNGT---NCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGT 237
           Q DQD+LVEV  N + +    C SS+Q+NG A+K+  SVLVEPSKSSLSIAGG SASKG 
Sbjct: 227 QTDQDVLVEVHSNGSSSAFGGCMSSVQENGSADKETMSVLVEPSKSSLSIAGGLSASKGV 286

Query: 238 SRNHSSEISTSPNLAS-ARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVH 296
           SR+ SSE+S S NL S  R+ D+T G SGV+TRGA+ GLTGLLNLGNTCFMNSAIQCLVH
Sbjct: 287 SRSCSSELSQSQNLTSPVRELDSTYGVSGVSTRGATGGLTGLLNLGNTCFMNSAIQCLVH 346

Query: 297 TPEFARYFREDYRREINWQNPLGMV----------------------------------- 321
           TPEFARYFREDY +EINWQNPLGMV                                   
Sbjct: 347 TPEFARYFREDYHKEINWQNPLGMVGELALAFGDLLRKLWAPGRTPVAPRPFKTKLARFA 406

Query: 322 ------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARN 369
                       ELLAFLLDGLHEDLNRVKHKPYIKS+DADGRPDEEVADEYWANHIARN
Sbjct: 407 PQFSGYNQHDSQELLAFLLDGLHEDLNRVKHKPYIKSRDADGRPDEEVADEYWANHIARN 466

Query: 370 DSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPS 429
           DSIIVDVCQGQYKSTLVCPVCNK+SVTFDPFMYLSLPLQ+T TRTMTVTVFT DGSALPS
Sbjct: 467 DSIIVDVCQGQYKSTLVCPVCNKISVTFDPFMYLSLPLQSTITRTMTVTVFTCDGSALPS 526

Query: 430 TYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDH 489
             TVTVPK GRCRDLIQ L   CS+K +E+L +AEI+NH I RFL+DPLI LSTIKDDDH
Sbjct: 527 ACTVTVPKQGRCRDLIQALSGACSVKHNEKLLLAEIRNHLIDRFLEDPLILLSTIKDDDH 586

Query: 490 LAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQS 549
           LAAY++PKL K  +FLQLIHR +EQE G AQ +  WK YGTPLVS IS DDVI+ G IQS
Sbjct: 587 LAAYKIPKLSKSTIFLQLIHRREEQEIGNAQKSFGWKPYGTPLVSPISCDDVITRGDIQS 646

Query: 550 TVQRMLSPFLKKESLMHADSFDPSSMVTTVDPS-----GEAHSNS-SSNIAKEDASSSKA 603
            V  MLSP L+ E   H D  + S  V   DPS      EA ++S  S++   D +S K 
Sbjct: 647 IVYTMLSPMLRTERQGHTDISETSISVAASDPSCDITTSEAFTDSIESDLKDMDGNSYKT 706

Query: 604 VTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLL 663
           VTL  LPLQLVDE+N C DLSV  +K I++ SSS SI+V+VDWS K LEKY+TH+LENL 
Sbjct: 707 VTLSKLPLQLVDENNACIDLSVGEEKPIKLSSSSMSILVFVDWSHKFLEKYDTHYLENLP 766

Query: 664 EVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPE 723
           EVFK GPVTKKARTEPLSLYTCLEAFLREEPLVPEDMW+CPQCKE+RQASKKLDLWRLPE
Sbjct: 767 EVFKYGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWFCPQCKEQRQASKKLDLWRLPE 826

Query: 724 VLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMG 783
           VLVIHLKRFSYSRSMKHKLETFVNFPIHD +LT YVA+KN+SR Q+YELYALTNHYGGMG
Sbjct: 827 VLVIHLKRFSYSRSMKHKLETFVNFPIHDLDLTNYVAHKNNSRSQIYELYALTNHYGGMG 886

Query: 784 SGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           SGHYTAHIKLLDENRWYNFDDSHIS INE+DVKSAAAYVLFY+R
Sbjct: 887 SGHYTAHIKLLDENRWYNFDDSHISAINEEDVKSAAAYVLFYKR 930


>gi|359495412|ref|XP_003634986.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 5-like [Vitis
           vinifera]
          Length = 1056

 Score = 1257 bits (3252), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 640/884 (72%), Positives = 709/884 (80%), Gaps = 58/884 (6%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           WWQ W++YVNQDQ NN  D SSL EH +S  SS  KRPS IDNSDL+ D T+ED   G E
Sbjct: 48  WWQQWLEYVNQDQANNI-DVSSLSEHCDSVSSSDVKRPSVIDNSDLIYDMTSEDSTMGIE 106

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVM 120
           + DTL+EGRDYILLPQEVWNQL++WYGGGPTL RKVI+SGLSQT L+VEVYPLRLQL+V+
Sbjct: 107 LHDTLVEGRDYILLPQEVWNQLYAWYGGGPTLPRKVINSGLSQTGLSVEVYPLRLQLVVV 166

Query: 121 PRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANI 180
           P+G  STIRISKKETIGELHRRAC IF LN+EQ+CIWDYYGHRKHALMNDMD+TLDDANI
Sbjct: 167 PKGAHSTIRISKKETIGELHRRACEIFDLNMEQVCIWDYYGHRKHALMNDMDKTLDDANI 226

Query: 181 QMDQDILVEVLDNVNGT---NCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGT 237
           Q DQD+LVEV  N + +    C SS+Q+NG A+K+  SVLVEPSKSSLSIAGG SASKG 
Sbjct: 227 QTDQDVLVEVHSNGSSSAFGGCMSSVQENGSADKETMSVLVEPSKSSLSIAGGLSASKGV 286

Query: 238 SRNHSSEISTSPNLAS-ARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVH 296
           SR+ SSE+S S NL S  R+ D+T G SGV+TRGA+ GLTGLLNLGNTCFMNSAIQCLVH
Sbjct: 287 SRSCSSELSQSQNLTSPVRELDSTYGVSGVSTRGATGGLTGLLNLGNTCFMNSAIQCLVH 346

Query: 297 TPEFARYFREDYRREINWQNPLGMV----------------------------------- 321
           TPEFARYFREDY +EINWQNPLGMV                                   
Sbjct: 347 TPEFARYFREDYHKEINWQNPLGMVGELALAFGDLLRKLWAPGRTPVAPRPFKTKLARFA 406

Query: 322 ------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARN 369
                       ELLAFLLDGLHEDLNRVKHKPYIKS+DADGRPDEEVADEYWANHIARN
Sbjct: 407 PQFSGYNQHDSQELLAFLLDGLHEDLNRVKHKPYIKSRDADGRPDEEVADEYWANHIARN 466

Query: 370 DSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPS 429
           DSIIVDVCQGQYKSTLVCPVCNK+SVTFDPFMYLSLPLQ+T TRTMTVTVFT DGSALPS
Sbjct: 467 DSIIVDVCQGQYKSTLVCPVCNKISVTFDPFMYLSLPLQSTITRTMTVTVFTCDGSALPS 526

Query: 430 TYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDH 489
             TVTVPK GRCRDLIQ L   CS+K +E+L +AEI+NH I RFL+DPLI LSTIKDDDH
Sbjct: 527 ACTVTVPKQGRCRDLIQALSGACSVKHNEKLLLAEIRNHLIDRFLEDPLILLSTIKDDDH 586

Query: 490 LAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQS 549
           LAAY++PKL K  +FLQLIHR +EQE G AQ +  WK YGTPLVS IS DDVI+ G IQS
Sbjct: 587 LAAYKIPKLSKSTIFLQLIHRREEQEIGNAQKSFGWKPYGTPLVSPISCDDVITRGDIQS 646

Query: 550 TVQRMLSPFLKKESLMHADSFDPSSMVTTVDPS-----GEAHSNS-SSNIAKEDASSSKA 603
            V  MLSP L+ E   H D  + S  V   DPS      EA ++S  S++   D +S K 
Sbjct: 647 IVYTMLSPMLRTERQGHTDISETSISVAASDPSCDITTSEAFTDSIESDLKDMDGNSYKT 706

Query: 604 VTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLL 663
           VTL  LPLQLVDE+N C DLSV  +K I++ SSS SI+V+VDWS K LEKY+TH+LENL 
Sbjct: 707 VTLSKLPLQLVDENNACIDLSVGEEKPIKLSSSSMSILVFVDWSHKFLEKYDTHYLENLP 766

Query: 664 EVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPE 723
           EVFK GPVTKKARTEPLSLYTCLEAFLREEPLVPEDMW+CPQCKE+RQASKKLDLWRLPE
Sbjct: 767 EVFKYGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWFCPQCKEQRQASKKLDLWRLPE 826

Query: 724 VLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMG 783
           VLVIHLKRFSYSRSMKHKLETFVNFPIHD +LT YVA+KN+SR Q+YELYALTNHYGGMG
Sbjct: 827 VLVIHLKRFSYSRSMKHKLETFVNFPIHDLDLTNYVAHKNNSRSQIYELYALTNHYGGMG 886

Query: 784 SGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           SGHYTAHIKLLDENRWYNFDDSHIS INE+DVKSAAAYVLFY+R
Sbjct: 887 SGHYTAHIKLLDENRWYNFDDSHISAINEEDVKSAAAYVLFYKR 930


>gi|255578843|ref|XP_002530276.1| Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
 gi|223530208|gb|EEF32116.1| Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
          Length = 942

 Score = 1209 bits (3128), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 614/881 (69%), Positives = 700/881 (79%), Gaps = 63/881 (7%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPG--AG 58
           WWQHWI+YVN +QPN   DGSS  E+ +  GSS  K+P+ IDNSDL+ DAT  D    AG
Sbjct: 49  WWQHWIEYVNHEQPNTANDGSSSTEYCDLVGSS--KKPASIDNSDLIYDATTIDDSHVAG 106

Query: 59  PEIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLL 118
            E+ D+LLEGRDY+LLPQEVW QL+SWYGGGPTLARKVI SGLS+TELAVEVYPLRLQLL
Sbjct: 107 IEVHDSLLEGRDYVLLPQEVWKQLYSWYGGGPTLARKVICSGLSRTELAVEVYPLRLQLL 166

Query: 119 VMPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDA 178
           VMP+G+ STIRISKKETIG+LH+RAC IF LN EQ+ IWDYYG RKHALMNDMD+TLDDA
Sbjct: 167 VMPKGDRSTIRISKKETIGQLHKRACEIFDLNSEQLRIWDYYGQRKHALMNDMDKTLDDA 226

Query: 179 NIQMDQDILVEVLDNVNGT---NCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
           NIQMDQDILVEVL+NVNGT    C +SI D G  E       +   +S LSIAGG SASK
Sbjct: 227 NIQMDQDILVEVLNNVNGTALNGCMNSILDKGSTE-------IYSEESYLSIAGGLSASK 279

Query: 236 GTSRNHSSEISTSPNLAS-ARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCL 294
           G SR+  +E+    NL S   + DNT G++GV+TRG+S GLTGL NLGNTCFMNSAIQCL
Sbjct: 280 GGSRSCIAEVPQGQNLISPGGELDNTYGATGVSTRGSSGGLTGLQNLGNTCFMNSAIQCL 339

Query: 295 VHTPEFARYFREDYRREINWQNPLGMV--------------------------------- 321
           VHTPEF +YFREDY +EINWQNPLGMV                                 
Sbjct: 340 VHTPEFVKYFREDYHQEINWQNPLGMVGELAIAFGELLRKLWAPGRAPVPPRQFKAKLAR 399

Query: 322 --------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA
Sbjct: 400 FAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 459

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQ+TTTR++TVT+FT DGS L
Sbjct: 460 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQSTTTRSITVTIFTGDGSTL 519

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDD 487
           P   TVTVPK GRCRDLI  L N CSLK +E+L++AE++NH  QRFL+DPLISLSTIKDD
Sbjct: 520 PFPCTVTVPKQGRCRDLIHALSNSCSLKNNEDLQLAEVRNHLFQRFLEDPLISLSTIKDD 579

Query: 488 DHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKI 547
           DHLAAY++PK  KK + L+LIHR Q++E    QT ++WK  G PL+SSI  DDVI+ G +
Sbjct: 580 DHLAAYKIPKSSKKKLILRLIHRHQDRETNDTQTATRWKPCGIPLLSSIPCDDVITRGDV 639

Query: 548 QSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSN-IAKEDASSSKAVTL 606
           Q+ V +MLSPFL+ ESL H D  D +++V+  D   ++   +S++ ++ +D+SSSKA+ L
Sbjct: 640 QTVVHKMLSPFLRAESLRHDDIADSNTLVSASDECHDSSGEASTDPVSDKDSSSSKALML 699

Query: 607 PNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF 666
             LPLQLVDES+ C DLSV  +K I++ SS+TSIVVY+DWSQ+LL+KY+ +++ENL EV 
Sbjct: 700 LKLPLQLVDESDACIDLSVGEEKAIKLSSSTTSIVVYLDWSQELLKKYDMNYMENLPEVL 759

Query: 667 KNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLV 726
           K GP+ KKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLV
Sbjct: 760 KYGPINKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLV 819

Query: 727 IHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGH 786
           IHLKRFSYSRSMKHKLETFVNFPIHD +LT YVANKNS RRQLYELYALTNHYGGMGSGH
Sbjct: 820 IHLKRFSYSRSMKHKLETFVNFPIHDLDLTSYVANKNSIRRQLYELYALTNHYGGMGSGH 879

Query: 787 YTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           YTA IKLLDENRWYNFDDSHIS INE+DVKSAAAYVLFYRR
Sbjct: 880 YTARIKLLDENRWYNFDDSHISLINEEDVKSAAAYVLFYRR 920


>gi|449459070|ref|XP_004147269.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 5-like [Cucumis
           sativus]
          Length = 940

 Score = 1193 bits (3086), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 607/884 (68%), Positives = 696/884 (78%), Gaps = 68/884 (7%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           WWQHWI+YVNQDQP NT DGSS  E ++S GSS  KRP+ IDNSDL+ DA +ED  AG E
Sbjct: 48  WWQHWIEYVNQDQPINTNDGSSFAEIYDSFGSSMLKRPASIDNSDLIYDAASEDSSAGIE 107

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVM 120
           I DTLLEGRDY+LLPQEVWNQL  WYGGGP LARKVIS+GLSQTEL VEVYPLRLQLL +
Sbjct: 108 IHDTLLEGRDYVLLPQEVWNQLCLWYGGGPKLARKVISAGLSQTELTVEVYPLRLQLLEV 167

Query: 121 PRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANI 180
           P+G+ STIRISKKETIGELHRRAC IF LNLEQ+CIWDYYGHRKHALMNDMD+TLDDANI
Sbjct: 168 PKGDRSTIRISKKETIGELHRRACEIFDLNLEQVCIWDYYGHRKHALMNDMDKTLDDANI 227

Query: 181 QMDQDILVEVLDNVNGT---NCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGT 237
           QMDQDILVE+L++ N      C S +QDNG  +K+A+S+ +E SKS+L  AGG   +KG 
Sbjct: 228 QMDQDILVEILNHGNHNALGGCTSYVQDNGTTDKEATSIHLEASKSNLISAGGM-PNKGA 286

Query: 238 SRNHSSEISTSPN-LASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVH 296
           S+   +E+  S N  +S ++ DN  G SGV+TRG+S GLTGLLNLGNTCFMNSAIQCLVH
Sbjct: 287 SK---TEVVQSQNPTSSIKELDNAYGQSGVSTRGSSCGLTGLLNLGNTCFMNSAIQCLVH 343

Query: 297 TPEFARYFREDYRREINWQNPLGMV----------------------------------- 321
           TPEFARYFREDY +EINWQNPLGMV                                   
Sbjct: 344 TPEFARYFREDYHQEINWQNPLGMVGELAMAFGDLLRKLWAPGRTSVAPRPFKAKLARFA 403

Query: 322 ------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARN 369
                       ELLAFLLDGLHEDLNRVKHKPYIKS+DADGRPDEEVADEYWANHIARN
Sbjct: 404 PQFSGYNQHDSQELLAFLLDGLHEDLNRVKHKPYIKSRDADGRPDEEVADEYWANHIARN 463

Query: 370 DSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPS 429
           DSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQ+TTTRTMTVTVFTSDGS  PS
Sbjct: 464 DSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQSTTTRTMTVTVFTSDGSKRPS 523

Query: 430 TYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDH 489
           T TVTVPK GRCRDLIQ L   CSL+ SE+L +AE+++H + RFL+DPLISLSTIKDDDH
Sbjct: 524 TLTVTVPKQGRCRDLIQALNGTCSLRHSEKLLLAEVRDHLVHRFLEDPLISLSTIKDDDH 583

Query: 490 LAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQS 549
           +AAY++PKL K A +LQL+HR QEQ    A   S W+ +GTPLVS +S +  +    +Q 
Sbjct: 584 IAAYKIPKLTKNAKYLQLVHRSQEQVTSDADIMSGWRPFGTPLVSVVSCEGPVKKDYLQR 643

Query: 550 TVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGE--AHSNSSSNIA----KEDASSSKA 603
            V+R LSP  K  +LM  D  D     +++  +GE   H +SS+         D   SKA
Sbjct: 644 IVKRALSPLAKIGTLMDTDVSD-----SSMSHAGEDLHHHDSSAETCTSSLNSDDPKSKA 698

Query: 604 VTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLL 663
           +    LPLQL++E NVC +LS  G++ +++P SS S++VY+DWSQKLL+K++T +LENL 
Sbjct: 699 MEPFKLPLQLLNEENVCIELS-SGEEAVKLPPSS-SVLVYIDWSQKLLKKFDTGYLENLP 756

Query: 664 EVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPE 723
           EVFK+GPV KKARTEPLSLY+CLE+FLREEPLVPEDMW+CPQCKERRQASKKLDLWRLPE
Sbjct: 757 EVFKSGPVMKKARTEPLSLYSCLESFLREEPLVPEDMWFCPQCKERRQASKKLDLWRLPE 816

Query: 724 VLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMG 783
           VLVIHLKRFSYSRSMKHKLETFVNFPIHDF+LT YVANKN+S+RQLYELYALTNHYG MG
Sbjct: 817 VLVIHLKRFSYSRSMKHKLETFVNFPIHDFDLTNYVANKNNSQRQLYELYALTNHYGSMG 876

Query: 784 SGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           SGHYTAHIKL+DENRWY+FDDSHIS INE++VKSAAAYVLFYRR
Sbjct: 877 SGHYTAHIKLIDENRWYSFDDSHISLINEEEVKSAAAYVLFYRR 920


>gi|356571884|ref|XP_003554101.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 5-like [Glycine
           max]
          Length = 938

 Score = 1181 bits (3056), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 606/887 (68%), Positives = 686/887 (77%), Gaps = 67/887 (7%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           WWQHWI+YVNQ+Q N + D SSL EH + A SS  KRP+GIDNSDL++DA +ED G G E
Sbjct: 47  WWQHWIEYVNQEQTNTSYDASSLSEHCDLANSSVLKRPAGIDNSDLIDDAVSEDTGMGIE 106

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVM 120
           I DTLLEGRDY+LLPQEVWNQL  WYGGGPTLARKVISSGLSQTELAVEVYPLRLQLL++
Sbjct: 107 IHDTLLEGRDYVLLPQEVWNQLFRWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLML 166

Query: 121 PRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANI 180
           P+ +   IRISKKETIG+LHR+AC IF L  +Q+CIWDYY  RKHALMNDMD+TLDDAN+
Sbjct: 167 PKNDRFPIRISKKETIGQLHRKACEIFDLQPDQVCIWDYYARRKHALMNDMDKTLDDANL 226

Query: 181 QMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRN 240
           QMDQDILVEV++N N T   S  Q+NG A+++ +S LVEPSKSSLSIAGG SAS+G SR 
Sbjct: 227 QMDQDILVEVINNTNNT---SFAQENGSAQREMNSALVEPSKSSLSIAGGLSASRGASRG 283

Query: 241 HSSEISTSPNLAS-ARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPE 299
           H+ ++S+S NL S  RD +N  G+SGVTTRG+  GLTGLLNLGNTC+MNSAIQCLVHTPE
Sbjct: 284 HNMDLSSSQNLNSPVRDVENPYGTSGVTTRGSFGGLTGLLNLGNTCYMNSAIQCLVHTPE 343

Query: 300 FARYFREDYRREINWQNPLGMV-------------------------------------- 321
           FARYFREDY REINWQNPLGMV                                      
Sbjct: 344 FARYFREDYHREINWQNPLGMVGELALAFGELLRKLWAPGRTPIAPRPFKAKLVRFAPQF 403

Query: 322 ---------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSI 372
                    ELLAFLLDGLHEDLNRVKHKPYIKS+DADGRPDEEVADEYWANHIARNDSI
Sbjct: 404 SGHNQHDSQELLAFLLDGLHEDLNRVKHKPYIKSRDADGRPDEEVADEYWANHIARNDSI 463

Query: 373 IVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYT 432
           IVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQ TT RTMTVTVF  DG+ALPS  T
Sbjct: 464 IVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQPTTNRTMTVTVFACDGAALPSACT 523

Query: 433 VTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAA 492
           VTVPK GRCRDLIQ L N CSLK +E L + EI+NH I R+ +DPL  LS IKDDD LAA
Sbjct: 524 VTVPKQGRCRDLIQALSNACSLKHNERLVLVEIRNHLIHRYFEDPLQLLSNIKDDDRLAA 583

Query: 493 YRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQ 552
           Y+VPK+ K   +LQLIHR +EQ    +   S WK YGTP+VS IS DD ++ G IQ  V 
Sbjct: 584 YKVPKIDKNTKYLQLIHRRREQS-SDSHIISGWKPYGTPIVSLISCDDTVTRGDIQVIVN 642

Query: 553 RMLSPFLKK----------ESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSK 602
           RMLSP L+K          E+ +   + D  S  ++ D      +N  SN   +D ++SK
Sbjct: 643 RMLSPLLRKGINVEQATTSETSIPKATSDQCSFNSSDDACA---ANMVSNSVNKDTTNSK 699

Query: 603 AVTLPNLPLQLV--DESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLE 660
           A  +P   L L+  D++N C DLS+  +K +++   S  I+VY+DWSQKLLEKY+TH LE
Sbjct: 700 APPVPLPTLPLLLVDDNNACIDLSMGEEKVVKLSPLSPKILVYIDWSQKLLEKYDTHPLE 759

Query: 661 NLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWR 720
            L EV K GPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCP+CKERRQASKKLDLWR
Sbjct: 760 TLPEVLKYGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPKCKERRQASKKLDLWR 819

Query: 721 LPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYG 780
           LPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDF+LT Y+ANKN++RRQLYELYALTNHYG
Sbjct: 820 LPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFDLTNYIANKNNTRRQLYELYALTNHYG 879

Query: 781 GMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            MGSGHYTAHIKLLDENRWYNFDDSHIS I+ED+V +AAAYVLFYRR
Sbjct: 880 SMGSGHYTAHIKLLDENRWYNFDDSHISLISEDEVNTAAAYVLFYRR 926


>gi|356503356|ref|XP_003520476.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 5-like [Glycine
           max]
          Length = 938

 Score = 1176 bits (3042), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 604/884 (68%), Positives = 685/884 (77%), Gaps = 61/884 (6%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           WWQHWI+YVNQDQ N + D SSL E F+ A SSA KRP+GIDNSDL++DA  ED G G E
Sbjct: 47  WWQHWIEYVNQDQTNTSYDASSLSEQFDLANSSALKRPAGIDNSDLIDDAVLEDSGTGIE 106

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVM 120
           I DTLLEGRDY+LLPQEVWNQL  WYGGGPTLARKVISSGLSQTELAVEVYPLRLQLL++
Sbjct: 107 IHDTLLEGRDYVLLPQEVWNQLFRWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLML 166

Query: 121 PRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANI 180
           P+ +   IRISKKETIG+LHR+AC IF L  +Q+CIWDYY  R+HALMNDMD+TLDDAN+
Sbjct: 167 PKNDRFPIRISKKETIGQLHRKACEIFDLQPDQVCIWDYYARRRHALMNDMDKTLDDANL 226

Query: 181 QMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRN 240
           QMDQDILVEV++N N T   S  Q+NG A+++A+S LVEPSKSSLSIAGG SAS+G S+ 
Sbjct: 227 QMDQDILVEVINNTNNT---SFAQENGSAQREANSALVEPSKSSLSIAGGLSASRGASKG 283

Query: 241 HSSEISTSPNLAS-ARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPE 299
           +++++S+S NL S  RD +N  G+SGVTTR + +GLTGLLNLGNTC+MNSAIQCLVHTPE
Sbjct: 284 YNTDLSSSQNLNSPVRDVENPYGTSGVTTRSSFLGLTGLLNLGNTCYMNSAIQCLVHTPE 343

Query: 300 FARYFREDYRREINWQNPLGMV-------------------------------------- 321
           FARYFREDY REINWQNPLGMV                                      
Sbjct: 344 FARYFREDYHREINWQNPLGMVGELALAFGELLRKLWAPGRTPIAPRPFKAKLVRFAPQF 403

Query: 322 ---------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSI 372
                    ELLAFLLDGLHEDLNRVKHKPYIKS+DADGRPDEEVADEYWANHIARNDSI
Sbjct: 404 SGHNQHDSQELLAFLLDGLHEDLNRVKHKPYIKSRDADGRPDEEVADEYWANHIARNDSI 463

Query: 373 IVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYT 432
           IVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQ TT RTMTVTVF  DG++LP + T
Sbjct: 464 IVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQPTTNRTMTVTVFACDGASLPFSCT 523

Query: 433 VTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAA 492
           VTVPK GRCRDLIQ L N CSLK +E L + EI+NH I R+ +DPL  LS IKDDD LAA
Sbjct: 524 VTVPKQGRCRDLIQALSNACSLKHNERLVLVEIRNHLIHRYFEDPLQLLSNIKDDDRLAA 583

Query: 493 YRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQ 552
           Y+VPK+ K   +LQLIHR +EQ    +   S WK YGTP+VS IS DD ++ G IQ  V 
Sbjct: 584 YKVPKIDKNTKYLQLIHRQREQS-SDSHIISGWKPYGTPIVSLISCDDTVTRGDIQVIVN 642

Query: 553 RMLSPFLKKE-SLMHADSFDPSSMVTTVDPSG------EAHSNSSSNIAKEDASSSKAVT 605
            MLSP L+K  ++  A + + S    T D             N  SN   +D ++SKA  
Sbjct: 643 CMLSPLLRKGINVEQATTSETSIPKATSDHCSFNSDDDACAPNMMSNSVNKDTTNSKAPP 702

Query: 606 LPNLPLQL--VDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLL 663
           +P   L L  VD++N C DLS+  +K +++   S  I+VY+DWSQKLLEKY+TH LE L 
Sbjct: 703 MPLPTLPLLLVDDNNACIDLSMGEEKVVKLSPLSPKILVYIDWSQKLLEKYDTHTLETLP 762

Query: 664 EVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPE 723
           EV K GPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCP+CKERRQASKKLDLWRLPE
Sbjct: 763 EVLKYGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPKCKERRQASKKLDLWRLPE 822

Query: 724 VLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMG 783
           VLVIHLKRFSYSRSMKHKLETFVNFPIHDF+LT Y+ANKN+SRRQLYELYALTNHYG MG
Sbjct: 823 VLVIHLKRFSYSRSMKHKLETFVNFPIHDFDLTNYIANKNNSRRQLYELYALTNHYGSMG 882

Query: 784 SGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           SGHYTAHIKLLDENRWYNFDDSHIS I+ED+V +AAAYVLFYRR
Sbjct: 883 SGHYTAHIKLLDENRWYNFDDSHISLISEDEVNTAAAYVLFYRR 926


>gi|357509209|ref|XP_003624893.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula]
 gi|355499908|gb|AES81111.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula]
          Length = 912

 Score = 1150 bits (2976), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 592/875 (67%), Positives = 668/875 (76%), Gaps = 69/875 (7%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           WWQHWI+YVNQDQ N + DGSS  EH +   SSA KRP+GIDN DL+++  +ED   G E
Sbjct: 47  WWQHWIEYVNQDQANPSYDGSSFPEHSDLVSSSAIKRPAGIDNYDLIDNTGSEDSSTGIE 106

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVM 120
           I DTLLEGRDY+LLP+EVW+QL  WYGGGPTL RKVISSGLSQTE AVEVYPLRLQLLV+
Sbjct: 107 IHDTLLEGRDYVLLPREVWDQLFKWYGGGPTLERKVISSGLSQTEFAVEVYPLRLQLLVL 166

Query: 121 PRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANI 180
            R   STIRISKKETIG+LH+RAC IF L L+Q+ IWDYYGHRKHALMNDMD+TLDD N+
Sbjct: 167 TRNVRSTIRISKKETIGQLHKRACEIFDLLLDQVRIWDYYGHRKHALMNDMDKTLDDVNL 226

Query: 181 QMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRN 240
           QMDQDILVEV++N       SS Q+NG   ++A+SVLVEP+KSS+S AGG S SKG SR 
Sbjct: 227 QMDQDILVEVVNNT------SSAQENGSVHREANSVLVEPTKSSVSTAGGLSTSKGASRG 280

Query: 241 HSSEISTSPNLAS-ARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPE 299
           ++ E  +S  L S  RDS+N  G+ GVTTRG+  GL GLLNLGNTCFMNSAIQCLVHTPE
Sbjct: 281 NNVEYYSSQKLNSPVRDSENPYGTLGVTTRGSFGGLIGLLNLGNTCFMNSAIQCLVHTPE 340

Query: 300 FARYFREDYRREINWQNPLGMV-------------------------------------- 321
           FARYFREDY +EIN+QNPLGMV                                      
Sbjct: 341 FARYFREDYHQEINFQNPLGMVGELALAFGELLRKLWAPGRTPIAPRPFKAKLARFAPQF 400

Query: 322 ---------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSI 372
                    ELLAFLLDGLHEDLNRVKHKPYIKS+DADGRPDEEVADEYWANHI+RNDSI
Sbjct: 401 SGHNQHDSQELLAFLLDGLHEDLNRVKHKPYIKSRDADGRPDEEVADEYWANHISRNDSI 460

Query: 373 IVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYT 432
           IVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQ+TT RTMTVTVF+ D   LPS  T
Sbjct: 461 IVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQSTTNRTMTVTVFSCDSITLPSPCT 520

Query: 433 VTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAA 492
           VTVPK GRCRDLIQ L N CSLK +E + + EI+NH I R+ +DPL  LS+IKDDD LAA
Sbjct: 521 VTVPKQGRCRDLIQALSNSCSLKHNERIVLVEIRNHLIHRYFEDPLQLLSSIKDDDRLAA 580

Query: 493 YRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQ 552
           Y++ K+ K   +LQLIHR +EQ    + T S WK YGTP+VS IS DD I+ G IQ  V 
Sbjct: 581 YKITKMDKNTKYLQLIHRRREQS-SDSHTISGWKPYGTPIVSLISSDDKITRGDIQVMVN 639

Query: 553 RMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQ 612
           R+LSP L K                    +  A +N  SN   +D + SKA  LP LPL 
Sbjct: 640 RILSPLLLKGD--------------NAQQAASAETNVVSNSINKDDTVSKATHLPTLPLL 685

Query: 613 LVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVT 672
           LVD++N C DLS+  +K +++  SS  ++VY+DWSQKLLEKY+T  LE L EV K GPVT
Sbjct: 686 LVDDNNACIDLSMGEEKVVKLSPSSARVLVYIDWSQKLLEKYDTRPLETLPEVLKYGPVT 745

Query: 673 KKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF 732
           KKARTEPLSLYTCLEAFLREEPLVPEDMWYCP+CKERRQASKKLDLWRLPEVLVIHLKRF
Sbjct: 746 KKARTEPLSLYTCLEAFLREEPLVPEDMWYCPKCKERRQASKKLDLWRLPEVLVIHLKRF 805

Query: 733 SYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIK 792
           SYSRSMKHKLETFVNFPIHDF+LT Y+ANKN+SRRQ+YELYALTNHYG MGSGHYTAHIK
Sbjct: 806 SYSRSMKHKLETFVNFPIHDFDLTNYIANKNNSRRQVYELYALTNHYGSMGSGHYTAHIK 865

Query: 793 LLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           LLDENRWYNFDDSHIS I+EDDV +AAAYVLFYRR
Sbjct: 866 LLDENRWYNFDDSHISLISEDDVNTAAAYVLFYRR 900


>gi|297827733|ref|XP_002881749.1| ubiquitin-specific protease 5 [Arabidopsis lyrata subsp. lyrata]
 gi|297327588|gb|EFH58008.1| ubiquitin-specific protease 5 [Arabidopsis lyrata subsp. lyrata]
          Length = 924

 Score = 1138 bits (2944), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 572/880 (65%), Positives = 671/880 (76%), Gaps = 65/880 (7%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           WWQ WI+YVNQDQP NT DGSSL EH +S GSS  K+PS IDNSDL+ D++ EDP    E
Sbjct: 48  WWQDWIEYVNQDQPCNTNDGSSLSEHCDSPGSSTLKKPSRIDNSDLIYDSSLEDPSNTSE 107

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVM 120
           I++TL EGRDY+LLPQEVWNQL SWYGGGPTLAR+VISSGLSQTELAVEVYPLRLQLL+M
Sbjct: 108 IIETLQEGRDYVLLPQEVWNQLRSWYGGGPTLARRVISSGLSQTELAVEVYPLRLQLLLM 167

Query: 121 PRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANI 180
           P+ + S+IRISKKETI ELHRRAC IF LN E + IWDYYGH+K++LMND+D+TLDDAN+
Sbjct: 168 PKSDHSSIRISKKETIRELHRRACEIFDLNSEHVRIWDYYGHQKYSLMNDLDKTLDDANL 227

Query: 181 QMDQDILVEVLDNVNGTNCKSSIQ---DNGFAEKKASSVLVEPSKSSLSIAGGWSASKGT 237
           QMDQDILVEVLD +NGT   + IQ   +NG  ++ ++S+L+EPSKSSL+ AGG+S+S+  
Sbjct: 228 QMDQDILVEVLD-INGTLSSAHIQSAQENGLVDEDSTSILIEPSKSSLAAAGGFSSSRNA 286

Query: 238 SRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHT 297
            R  S E+S S         D+T  S+GVTTRG++ GLTGLLNLGNTCFMNSAIQCLVHT
Sbjct: 287 FRTGSVEVSQS--------FDSTYSSTGVTTRGSTAGLTGLLNLGNTCFMNSAIQCLVHT 338

Query: 298 PEFARYFREDYRREINWQNPLGMV------------------------------------ 321
           PEFA YF+EDY +EINWQNPLGMV                                    
Sbjct: 339 PEFASYFQEDYHQEINWQNPLGMVGELALAFGDLLRKLWAPGRTPIAPRPFKAKLARFAP 398

Query: 322 -----------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARND 370
                      ELLAFLLDGLHEDLNRVKHKPYI S+DADGRPDEEVADE+WANHIARND
Sbjct: 399 QFSGYNQHDSQELLAFLLDGLHEDLNRVKHKPYINSRDADGRPDEEVADEFWANHIARND 458

Query: 371 SIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPST 430
           SIIVDVCQGQYKSTLVCP+CNKVSVTFDPFMYLSLPLQ  TTR +TVTVF+ D +ALPST
Sbjct: 459 SIIVDVCQGQYKSTLVCPICNKVSVTFDPFMYLSLPLQFNTTRAITVTVFSCDKTALPST 518

Query: 431 YTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHL 490
            TV V K GRCRDLIQ L + CSLKQSEELK+AEI+N+ I R  +DPLI LSTIKDDDHL
Sbjct: 519 ITVNVSKQGRCRDLIQALTSACSLKQSEELKLAEIRNNFIHRLFEDPLIPLSTIKDDDHL 578

Query: 491 AAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQST 550
           AAY++ K  +    L+L+ R ++Q+ G  ++T Q K  GTPL+SS SR D ++ GKI   
Sbjct: 579 AAYKLSKSSENTTLLRLVLRRRDQKAGERESTVQLKPCGTPLLSSASRGDALTKGKIHCL 638

Query: 551 VQRMLSPFLKKESL---MHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLP 607
           +Q MLSPF ++ES+    ++DS  P       + S E   +    + K   S+S  +   
Sbjct: 639 IQNMLSPFRREESVGKRGNSDSSIPERRSARFNNSEE--EDKVDGLKKAKKSNSSELGAS 696

Query: 608 NLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFK 667
            L LQL+DE+N   +L  +  + I++PSS+T + +Y+DW+ +L   Y+   LE+L EV K
Sbjct: 697 KLSLQLIDENNKTINLPDDEAEAIKLPSSAT-VTIYLDWTPELSGMYDITCLESLPEVLK 755

Query: 668 NGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVI 727
            GP TKKAR+EPLSLY CLEAFLREEPLVP++MW+CPQC ERRQASKKLDLWRLPEVLVI
Sbjct: 756 YGPATKKARSEPLSLYACLEAFLREEPLVPDEMWFCPQCNERRQASKKLDLWRLPEVLVI 815

Query: 728 HLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHY 787
           HLKRFSYSRSMKHKLETFVNFP+HD +LTKYVANKN S+ QLYELYALTNHYGGMGSGHY
Sbjct: 816 HLKRFSYSRSMKHKLETFVNFPVHDLDLTKYVANKNLSQPQLYELYALTNHYGGMGSGHY 875

Query: 788 TAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           TAHIKLLD+NRWYNFDDSHIS INEDDVKS AAYVLFYRR
Sbjct: 876 TAHIKLLDDNRWYNFDDSHISHINEDDVKSGAAYVLFYRR 915


>gi|18405549|ref|NP_565944.1| ubiquitin carboxyl-terminal hydrolase 5 [Arabidopsis thaliana]
 gi|62901125|sp|O22207.2|UBP5_ARATH RecName: Full=Ubiquitin carboxyl-terminal hydrolase 5; AltName:
           Full=Deubiquitinating enzyme 5; Short=AtUBP5; AltName:
           Full=Ubiquitin thioesterase 5; AltName:
           Full=Ubiquitin-specific-processing protease 5
 gi|6648604|gb|AAF21246.1|AF048705_1 ubiquitin-specific protease [Arabidopsis thaliana]
 gi|20196935|gb|AAB86453.2| ubiquitin-specific protease 5 (UBP5), putative [Arabidopsis
           thaliana]
 gi|20466470|gb|AAM20552.1| putative ubiquitin carboxyl terminal hydrolase [Arabidopsis
           thaliana]
 gi|23198184|gb|AAN15619.1| putative ubiquitin carboxyl terminal hydrolase [Arabidopsis
           thaliana]
 gi|330254806|gb|AEC09900.1| ubiquitin carboxyl-terminal hydrolase 5 [Arabidopsis thaliana]
          Length = 924

 Score = 1127 bits (2916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 569/880 (64%), Positives = 665/880 (75%), Gaps = 65/880 (7%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           WWQ WI+YVNQDQP NT DGSSL EH +S GSS  K+PS IDNSDL+ D++ EDP    E
Sbjct: 48  WWQEWIEYVNQDQPCNTNDGSSLSEHCDSPGSSTLKKPSRIDNSDLIYDSSLEDPSNTSE 107

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVM 120
           I++TL EGRDY+LLPQEVWNQL SWYGGGPTLAR+VISSGLSQTELAVEVYPLRLQLL+M
Sbjct: 108 IIETLQEGRDYVLLPQEVWNQLRSWYGGGPTLARRVISSGLSQTELAVEVYPLRLQLLLM 167

Query: 121 PRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANI 180
           P+ + S IRISKKETI ELHRRAC IF L+ E + IWDYYGH+K++LMND+D+TLDDAN+
Sbjct: 168 PKSDHSAIRISKKETIRELHRRACEIFDLDSEHVRIWDYYGHQKYSLMNDLDKTLDDANL 227

Query: 181 QMDQDILVEVLDNVNGTNCKSSIQ---DNGFAEKKASSVLVEPSKSSLSIAGGWSASKGT 237
           QMDQDILVEVLD +NGT   + IQ   +NG  +  ++S+L+EPSKSSL+ AGG+S+S+  
Sbjct: 228 QMDQDILVEVLD-INGTLSSAHIQSAQENGLVDGDSTSILIEPSKSSLAAAGGFSSSRNA 286

Query: 238 SRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHT 297
            R  S E+S S         DNT  S+GVTTRG++ GLTGLLNLGNTCFMNSAIQCLVHT
Sbjct: 287 FRTGSVEVSQS--------FDNTYSSTGVTTRGSTAGLTGLLNLGNTCFMNSAIQCLVHT 338

Query: 298 PEFARYFREDYRREINWQNPLGMV------------------------------------ 321
           PEFA YF+EDY +EINWQNPLGMV                                    
Sbjct: 339 PEFASYFQEDYHQEINWQNPLGMVGELALAFGDLLRKLWAPGRTPIAPRPFKAKLARFAP 398

Query: 322 -----------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARND 370
                      ELLAFLLDGLHEDLNRVKHKPYI S+DADGRPDEEVADE+W NHIARND
Sbjct: 399 QFSGYNQHDSQELLAFLLDGLHEDLNRVKHKPYINSRDADGRPDEEVADEFWKNHIARND 458

Query: 371 SIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPST 430
           SIIVDVCQGQYKSTLVCP+CNKVSVTFDPFMYLSLPLQ  TTR +TVTVF+ D +ALPST
Sbjct: 459 SIIVDVCQGQYKSTLVCPICNKVSVTFDPFMYLSLPLQFNTTRAITVTVFSCDKTALPST 518

Query: 431 YTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHL 490
            TV V K GRCRDLIQ L N CSLKQSEELK+AEI+N+ I R  +DPLI LS+IKDDDHL
Sbjct: 519 ITVNVSKQGRCRDLIQALTNACSLKQSEELKLAEIRNNFIHRLFEDPLIPLSSIKDDDHL 578

Query: 491 AAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQST 550
           AAY++ K  +    L+L+ R ++Q+ G  ++T Q K  GTPL+SS S  D ++ GKI   
Sbjct: 579 AAYKLSKSSENTTLLRLVLRRRDQKAGERESTVQLKPCGTPLLSSASCGDALTKGKIHCL 638

Query: 551 VQRMLSPFLKKESL---MHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLP 607
           VQ MLSPF ++ES+    ++DS  P       + + E   +    + K   S+S  +   
Sbjct: 639 VQNMLSPFRREESVGKKGNSDSSIPERRSARFNNTEE--EDKVGGLKKAKKSNSSDLGAS 696

Query: 608 NLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFK 667
            L LQL+DE N   +L     + +++PSS+T + +Y+DW+ +L   Y+   LE+L EV K
Sbjct: 697 KLSLQLIDEDNKTINLPDNEAEAMKLPSSAT-VTIYLDWTPELSGMYDITCLESLPEVLK 755

Query: 668 NGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVI 727
            GP TKKAR+EPLSLY CLEAFLREEPLVP++MW+CPQC ERRQASKKLDLWRLPEVLVI
Sbjct: 756 YGPTTKKARSEPLSLYACLEAFLREEPLVPDEMWFCPQCNERRQASKKLDLWRLPEVLVI 815

Query: 728 HLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHY 787
           HLKRFSYSRSMKHKLETFVNFPIHD +LTKYVANKN S+ QLYELYALTNHYGGMGSGHY
Sbjct: 816 HLKRFSYSRSMKHKLETFVNFPIHDLDLTKYVANKNLSQPQLYELYALTNHYGGMGSGHY 875

Query: 788 TAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           TAHIKLLD++RWYNFDDSHIS INEDDVKS AAYVLFYRR
Sbjct: 876 TAHIKLLDDSRWYNFDDSHISHINEDDVKSGAAYVLFYRR 915


>gi|357152240|ref|XP_003576054.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 5-like
           [Brachypodium distachyon]
          Length = 930

 Score = 1042 bits (2694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 515/878 (58%), Positives = 629/878 (71%), Gaps = 82/878 (9%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           WWQ WIDYV QD    T +G     H +  GS+A +RP  I+N+DL++D   E      E
Sbjct: 59  WWQSWIDYVIQDSAGVTSNGY----HHHEFGSNAPRRPGAINNTDLLDDLAYEVSNMDME 114

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVM 120
           + DTL+EGRDYILLPQ+VW +LH WYGGGPTL RK I++GLSQT+LA+EVYPLRLQLL+M
Sbjct: 115 LHDTLVEGRDYILLPQQVWEKLHGWYGGGPTLPRKAINTGLSQTDLAIEVYPLRLQLLLM 174

Query: 121 PRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANI 180
           P+GE + IRISKK+ +GELH++AC +F L  +++CIWDYYG +KHALM+++++TLDDANI
Sbjct: 175 PKGEQAVIRISKKDIVGELHKKACEVFDLVPDEVCIWDYYGRKKHALMDNLEKTLDDANI 234

Query: 181 QMDQDILVEVLDNVNGT---NCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGT 237
           QMDQDILVEV  + NG     C SSIQ+N F E+ ASS++ + SKS LS +   ++    
Sbjct: 235 QMDQDILVEVSTDANGIFDGGCMSSIQENDFFER-ASSLMADASKSGLS-SENLASINYA 292

Query: 238 SRNHSSEISTSPNLASAR-DSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVH 296
           SR++SS +  +    S+  DS+N  G+ GVTTRG+  GLTGLLNLGNTCFMNSA+QCLVH
Sbjct: 293 SRSYSSGLPQNQCPRSSNGDSENVPGTVGVTTRGSPSGLTGLLNLGNTCFMNSAVQCLVH 352

Query: 297 TPEFARYFREDYRREINWQNPLGMV----------------------------------- 321
           TPEFARYFREDY  EINW NPLGMV                                   
Sbjct: 353 TPEFARYFREDYHCEINWNNPLGMVGELALAFGELLRKLWSPSRTPVSPRPFKTKLSRFA 412

Query: 322 ------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARN 369
                       ELLAFLLDGLHEDLNRVKH+PY+KS DADGR DEEVADEYWANHIARN
Sbjct: 413 PQFSGYNQHDSQELLAFLLDGLHEDLNRVKHRPYLKSNDADGRSDEEVADEYWANHIARN 472

Query: 370 DSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPS 429
           DSIIVDVCQGQYKSTLVCP+C KVSVTFDPFMYLSLPLQ  +TR+MTV VFT DGSA P+
Sbjct: 473 DSIIVDVCQGQYKSTLVCPICGKVSVTFDPFMYLSLPLQFASTRSMTVVVFTCDGSAPPT 532

Query: 430 TYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDH 489
            YTV+VPK GRCRDLIQ L + CSLK  E+L +AEI+NH +  FL+DP++ LSTIKDDDH
Sbjct: 533 PYTVSVPKQGRCRDLIQALSSACSLKNEEKLLIAEIRNHRVHLFLEDPVLQLSTIKDDDH 592

Query: 490 LAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQS 549
           LA YR+PKL K+A ++Q +HR +E + G   ++  WK YG PL++ I R++ ++   I  
Sbjct: 593 LAVYRLPKLEKRASYIQFVHRREELDHGNNSSSMSWKPYGVPLLAQIPRNETVTGSAIHE 652

Query: 550 TVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNL 609
             ++ML P L+ +   H                    S+ S+         SK       
Sbjct: 653 MGRKMLVPMLRNQVAQHT----------------AVQSSLSTRTQSYHTDGSK------F 690

Query: 610 PLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNG 669
            LQL D+SN   +   + D  IR+P SS + +++V+WS+  L+K NT+ LENL EVFK  
Sbjct: 691 QLQLNDDSNTVIE---QTDYAIRVPQSSLATIIFVNWSKSDLKKLNTNHLENLPEVFKYA 747

Query: 670 PVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHL 729
           P  K+ R EPLSLY CL+AFLREEPLVPE+MWYCP+CKE+RQASKKLDLWRLPEVLVIHL
Sbjct: 748 PPAKRTRGEPLSLYACLDAFLREEPLVPEEMWYCPRCKEQRQASKKLDLWRLPEVLVIHL 807

Query: 730 KRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTA 789
           KRFS+SRS KHKLETFVNFPIHD +LT Y+ANK  S+RQ+YELYA++NHYG M SGHYTA
Sbjct: 808 KRFSFSRSTKHKLETFVNFPIHDLDLTNYIANKKISQRQIYELYAVSNHYGSMASGHYTA 867

Query: 790 HIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           +IKLLDENRWYNFDDSH+S INE+DVKS AAYVLFYRR
Sbjct: 868 NIKLLDENRWYNFDDSHVSAINEEDVKSGAAYVLFYRR 905


>gi|218185716|gb|EEC68143.1| hypothetical protein OsI_36069 [Oryza sativa Indica Group]
          Length = 918

 Score = 1031 bits (2666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/878 (58%), Positives = 639/878 (72%), Gaps = 82/878 (9%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           WWQ WIDYV QD  N+T +GS   EH    GS+  +RP  IDN+DL++D  +E      E
Sbjct: 49  WWQSWIDYVIQDLANSTNNGSHHHEH----GSNVLRRPGAIDNTDLIDDTASEVSNMEIE 104

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVM 120
           + DTL+EGRDYILLPQ+VW +LH WYGGGPTL RK I++GLSQT+LA+EVYPLRLQLL+ 
Sbjct: 105 LHDTLVEGRDYILLPQQVWEKLHGWYGGGPTLPRKAINTGLSQTDLAIEVYPLRLQLLLA 164

Query: 121 PRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANI 180
           P+GE + IRISKK+T+GELH++AC +F L  +++CIWDYYG  +H+LM+++++TLDDANI
Sbjct: 165 PKGEQAVIRISKKDTVGELHKKACEVFDLIPDEVCIWDYYGRTRHSLMDNLEKTLDDANI 224

Query: 181 QMDQDILVEVLDNVNGT---NCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGT 237
           QMDQDILVEV  + NG+    C  SIQ+N + E++++S++ + SKS LS    ++++  T
Sbjct: 225 QMDQDILVEVTTDANGSLDGGCIGSIQENEYLERESTSLIADASKSGLS-NENFASNNYT 283

Query: 238 SRNHSSEISTSPNLASAR-DSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVH 296
           SR++SS ++ S  L S+  D DN  G+S + TRG+ +GLTGLLNLGNTCFMNSAIQCLVH
Sbjct: 284 SRSYSSSLTQSQYLRSSNGDLDNMHGTSAMITRGSPLGLTGLLNLGNTCFMNSAIQCLVH 343

Query: 297 TPEFARYFREDYRREINWQNPLGMV----------------------------------- 321
           TPEFARYFREDY REINWQNPLGMV                                   
Sbjct: 344 TPEFARYFREDYHREINWQNPLGMVGELALAFGELLRKLWAPGRTPVSPRPFKTKLSRFA 403

Query: 322 ------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARN 369
                       ELLAFLLDGLHEDLNRVKH+PYIKSKDADGR D+EVADEYWANHIARN
Sbjct: 404 PQFSGYNQHDSQELLAFLLDGLHEDLNRVKHRPYIKSKDADGRSDDEVADEYWANHIARN 463

Query: 370 DSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPS 429
           +SIIVDVCQGQYKSTLVCP C KVSVTFDPFMYLSLPLQ T+TR+MTV VFT DGS  P+
Sbjct: 464 NSIIVDVCQGQYKSTLVCPACGKVSVTFDPFMYLSLPLQFTSTRSMTVMVFTFDGSTPPT 523

Query: 430 TYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDH 489
            YTV VPK GRCRDLIQ + N CSL+  E L +AEI+NH I R LDDP++ LSTI DDDH
Sbjct: 524 PYTVNVPKQGRCRDLIQAISNACSLRNGERLVIAEIRNHRIHRLLDDPVVQLSTINDDDH 583

Query: 490 LAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQS 549
           LA YR+PK+ KK  ++Q +HR  + + G   + + WK YG PL++ +SR++ ++   I  
Sbjct: 584 LAVYRLPKMEKKPNYIQFVHRRDDWDNGNNISVTAWKPYGVPLLAQVSRNEAVTGMHIHE 643

Query: 550 TVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNL 609
            V++ML+P  K +   H+     S+   T       H++S+                   
Sbjct: 644 MVRKMLAPMQKNQESQHSVQSSVSTRTQTY------HTDSTK-----------------F 680

Query: 610 PLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNG 669
            LQL+D+SN   +   + + TIR+P SS + V++V+WS+  L+K NTH LENL EVFK  
Sbjct: 681 QLQLIDDSNTTIE---QSNDTIRVPQSSLAAVIFVNWSKADLKKLNTHHLENLPEVFKYA 737

Query: 670 PVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHL 729
           P  K+ R EPLSLY+CL+AFLREEPLVPEDMWYCP+CKE+RQASKKLDLWRLPEVLVIHL
Sbjct: 738 PPAKRTRGEPLSLYSCLDAFLREEPLVPEDMWYCPRCKEQRQASKKLDLWRLPEVLVIHL 797

Query: 730 KRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTA 789
           KRFS+SRS K KLETFVNFPIHDF+LT Y+ANK SS RQ+YELYA++NHYG M SGHYTA
Sbjct: 798 KRFSFSRSTKQKLETFVNFPIHDFDLTNYIANKKSSERQIYELYAVSNHYGSMASGHYTA 857

Query: 790 HIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           +IKLLDE RWYNFDDSH+S INE+DVKS AAYVLFYRR
Sbjct: 858 YIKLLDEERWYNFDDSHVSAINEEDVKSGAAYVLFYRR 895


>gi|222615950|gb|EEE52082.1| hypothetical protein OsJ_33861 [Oryza sativa Japonica Group]
          Length = 918

 Score = 1031 bits (2666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/878 (58%), Positives = 639/878 (72%), Gaps = 82/878 (9%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           WWQ WIDYV QD  N+T +GS   EH    GS+  +RP  IDN+DL++D  +E      E
Sbjct: 49  WWQSWIDYVIQDLANSTNNGSHHHEH----GSNVLRRPGAIDNTDLIDDTASEVSNMEIE 104

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVM 120
           + DTL+EGRDYILLPQ+VW +LH WYGGGPTL RK I++GLSQT+LA+EVYPLRLQLL+ 
Sbjct: 105 LHDTLVEGRDYILLPQQVWEKLHGWYGGGPTLPRKAINTGLSQTDLAIEVYPLRLQLLLA 164

Query: 121 PRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANI 180
           P+GE + IRISKK+T+GELH++AC +F L  +++CIWDYYG  +H+LM+++++TLDDANI
Sbjct: 165 PKGEQAVIRISKKDTVGELHKKACEVFDLIPDEVCIWDYYGRTRHSLMDNLEKTLDDANI 224

Query: 181 QMDQDILVEVLDNVNGT---NCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGT 237
           QMDQDILVEV  + NG+    C  SIQ+N + E++++S++ + SKS LS    ++++  T
Sbjct: 225 QMDQDILVEVTTDANGSLDGGCIGSIQENEYLERESTSLIADASKSGLS-NENFASNNYT 283

Query: 238 SRNHSSEISTSPNLASAR-DSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVH 296
           SR++SS ++ S  L S+  D DN  G+S + TRG+ +GLTGLLNLGNTCFMNSAIQCLVH
Sbjct: 284 SRSYSSSLTQSQYLRSSNGDLDNMHGTSAMITRGSPLGLTGLLNLGNTCFMNSAIQCLVH 343

Query: 297 TPEFARYFREDYRREINWQNPLGMV----------------------------------- 321
           TPEFARYFREDY REINWQNPLGMV                                   
Sbjct: 344 TPEFARYFREDYHREINWQNPLGMVGELALAFGELLRKLWAPGRTPVSPRPFKTKLSRFA 403

Query: 322 ------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARN 369
                       ELLAFLLDGLHEDLNRVKH+PYIKSKDADGR D+EVADEYWANHIARN
Sbjct: 404 PQFSGYNQHDSQELLAFLLDGLHEDLNRVKHRPYIKSKDADGRSDDEVADEYWANHIARN 463

Query: 370 DSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPS 429
           +SIIVDVCQGQYKSTLVCP C KVSVTFDPFMYLSLPLQ T+TR+MTV VFT DGS  P+
Sbjct: 464 NSIIVDVCQGQYKSTLVCPACGKVSVTFDPFMYLSLPLQFTSTRSMTVMVFTFDGSTPPT 523

Query: 430 TYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDH 489
            YTV VPK GRCRDLIQ + N CSL+  E L +AEI+NH I R LDDP++ LSTI DDDH
Sbjct: 524 PYTVNVPKQGRCRDLIQAISNACSLRNGERLVIAEIRNHRIHRLLDDPVVQLSTINDDDH 583

Query: 490 LAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQS 549
           LA YR+PK+ KK  ++Q +HR  + + G   + + WK YG PL++ +SR++ ++   I  
Sbjct: 584 LAVYRLPKMEKKPNYIQFVHRRDDWDNGNNISVTAWKPYGVPLLAQVSRNETVTGMHIHE 643

Query: 550 TVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNL 609
            V++ML+P  K +   H+     S+   T       H++S+                   
Sbjct: 644 MVRKMLAPMQKNQESQHSVQSSVSTRTQTY------HTDSTK-----------------F 680

Query: 610 PLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNG 669
            LQL+D+SN   +   + + TIR+P SS + V++V+WS+  L+K NTH LENL EVFK  
Sbjct: 681 QLQLIDDSNTTIE---QSNDTIRVPQSSLAAVIFVNWSKADLKKLNTHHLENLPEVFKYA 737

Query: 670 PVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHL 729
           P  K+ R EPLSLY+CL+AFLREEPLVPEDMWYCP+CKE+RQASKKLDLWRLPEVLVIHL
Sbjct: 738 PPAKRTRGEPLSLYSCLDAFLREEPLVPEDMWYCPRCKEQRQASKKLDLWRLPEVLVIHL 797

Query: 730 KRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTA 789
           KRFS+SRS K KLETFVNFPIHDF+LT Y+ANK SS RQ+YELYA++NHYG M SGHYTA
Sbjct: 798 KRFSFSRSTKQKLETFVNFPIHDFDLTNYIANKKSSERQIYELYAVSNHYGSMASGHYTA 857

Query: 790 HIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           +IKLLDE RWYNFDDSH+S INE+DVKS AAYVLFYRR
Sbjct: 858 YIKLLDEERWYNFDDSHVSAINEEDVKSGAAYVLFYRR 895


>gi|224145371|ref|XP_002336224.1| predicted protein [Populus trichocarpa]
 gi|222832697|gb|EEE71174.1| predicted protein [Populus trichocarpa]
          Length = 749

 Score =  999 bits (2583), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/725 (69%), Positives = 558/725 (76%), Gaps = 65/725 (8%)

Query: 168 MNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKS---SIQDNGFAEKKASSVLVEPSKSS 224
           MNDMD+TLDDAN+QMDQDILVEV D  NGT       S QDNG   K ASS  +EPSKSS
Sbjct: 1   MNDMDKTLDDANLQMDQDILVEVHDIANGTALSRFIRSAQDNGPTVKDASSFHLEPSKSS 60

Query: 225 LSIAGGWSASKGTSRNHSSEISTSPNLAS--------ARDSDNTLGSSGVTTRGASVGLT 276
           LSIAGG SASKG SR  S+E S SPNL S         R+ DN  G+S VTTRG+S GL 
Sbjct: 61  LSIAGGLSASKGASRGCSAEPSQSPNLTSQGPNLTYQGRELDNAYGTSTVTTRGSSGGLI 120

Query: 277 GLLNLGNTCFMNSAIQCLVHTPEFARYFREDYRREINWQNPLGMV--------------- 321
           GL NLGNTCFMNSAIQCLVHT EFA YFREDY +EINW+NPLGMV               
Sbjct: 121 GLQNLGNTCFMNSAIQCLVHTSEFAEYFREDYHQEINWKNPLGMVGELALAFGELLRRLW 180

Query: 322 --------------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDA 349
                                           ELLAFLLDGLHEDLNRVKHKPY KSKDA
Sbjct: 181 APGRTAIAPRQFKMKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKHKPYKKSKDA 240

Query: 350 DGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQA 409
           DGRPDEEVADEYWA+HIARNDSIIVDVCQGQYKSTLVCP CNK+SVTFDPFMYLSLPLQ+
Sbjct: 241 DGRPDEEVADEYWASHIARNDSIIVDVCQGQYKSTLVCPECNKISVTFDPFMYLSLPLQS 300

Query: 410 TTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHS 469
           TTTR+MTVTVFT DGSALP   TVTVPK GRCRDL+  L   CSLK SEELK+AE++NH 
Sbjct: 301 TTTRSMTVTVFTCDGSALPFACTVTVPKQGRCRDLMNALSCACSLKNSEELKLAEVRNHL 360

Query: 470 IQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYG 529
            QRFL+DPLISLSTIKDDDHLAAY++ K +KK + L+LIHR QEQE G  +   + K +G
Sbjct: 361 FQRFLEDPLISLSTIKDDDHLAAYKIAKSLKKTLLLRLIHRCQEQETGDTKAAQKLKPFG 420

Query: 530 TPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVD-----PSGE 584
           TPLVS IS DDVI+ G IQ  V  MLSP L+ ESL  AD  +P S +   D      S E
Sbjct: 421 TPLVSLISHDDVITRGDIQKVVHTMLSPLLRSESLRQADIPEPCSSLAASDMCHHSSSDE 480

Query: 585 AHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYV 644
           A +N  S+   +D+S S+AVTL  LPLQLV+ESN C DLSV  DKTI++ S+STS++VYV
Sbjct: 481 ACTNPLSDSMNKDSSGSRAVTLFKLPLQLVEESNACIDLSVGEDKTIKLSSTSTSMLVYV 540

Query: 645 DWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMW--Y 702
           DWSQ+LLEKY+ H+LENL EVFK GPV KKARTEPLSLYTCLE FLREEPLVPEDMW  Y
Sbjct: 541 DWSQELLEKYDIHYLENLPEVFKYGPVNKKARTEPLSLYTCLEGFLREEPLVPEDMWLVY 600

Query: 703 CPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANK 762
           CP+CKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPI DF+LT Y+ANK
Sbjct: 601 CPKCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIRDFDLTNYIANK 660

Query: 763 NSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYV 822
           N+++RQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDD+HISPINE+DVKSAAAYV
Sbjct: 661 NNTQRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDAHISPINEEDVKSAAAYV 720

Query: 823 LFYRR 827
           LFYRR
Sbjct: 721 LFYRR 725


>gi|414588303|tpg|DAA38874.1| TPA: hypothetical protein ZEAMMB73_967629 [Zea mays]
          Length = 829

 Score =  835 bits (2157), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/791 (56%), Positives = 540/791 (68%), Gaps = 103/791 (13%)

Query: 86  YGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVMPRGECSTIRISKKETIGELHRRACS 145
           YGGGPTL RK I++G SQT+LA+EVYPLRLQL++M RGE + IRISKK            
Sbjct: 66  YGGGPTLPRKAINTGFSQTDLAIEVYPLRLQLILMSRGERTFIRISKK------------ 113

Query: 146 IFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQD 205
                   +CIWDYYG  KH+LM+ +D+TLDDANIQMDQ+ILVEV  + +G+     ++ 
Sbjct: 114 --------VCIWDYYGRTKHSLMDSLDKTLDDANIQMDQNILVEVTTDASGS-LDGLVKR 164

Query: 206 NGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASAR-DSDNTLGSS 264
           N F E  A        KS L     ++A+   SR++SS ++ S  L S   D DN  GSS
Sbjct: 165 NNFFESDAP-------KSGLPDEN-FAANNYASRSYSSSLTPSIYLRSPNGDLDNVHGSS 216

Query: 265 GVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDYRREINWQNPLGMV--- 321
           G+ TRG+ +GLTGLLNLGNTC+MNSAIQCLVHTP+F +YF EDY REIN QNPLG V   
Sbjct: 217 GMITRGSPLGLTGLLNLGNTCYMNSAIQCLVHTPQFTKYFCEDYHREINRQNPLGNVGEL 276

Query: 322 ---------------------------------------------ELLAFLLDGLHEDLN 336
                                                        ELLAFLLDGLHEDLN
Sbjct: 277 ALAFGELLRKLWAPGGRAPVSPRPFKMKLSRFASQFSGYNQHDSQELLAFLLDGLHEDLN 336

Query: 337 RVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVT 396
           RVKH+PYI S DADGR DEEVADEYWANHIARN+SIIVDVCQGQYKSTLVCPVC KVSVT
Sbjct: 337 RVKHRPYINSGDADGRSDEEVADEYWANHIARNNSIIVDVCQGQYKSTLVCPVCGKVSVT 396

Query: 397 FDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQ 456
           FDPFMYLSLPLQ  +TR++T  VF+ DGS  P+ +TV VPK GRCRDL+Q LG  CSLK 
Sbjct: 397 FDPFMYLSLPLQFASTRSVTAVVFSCDGSVPPTPFTVNVPKQGRCRDLLQALGAACSLKN 456

Query: 457 SEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEP 516
            E+L +AEI+NH I RF+DDP++ LSTI DDDHLA Y++PKL K+  ++Q +HR ++ + 
Sbjct: 457 GEKLLIAEIRNHKIYRFIDDPVLQLSTISDDDHLAVYKLPKLEKRVNYIQFVHRHEDLDH 516

Query: 517 GAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMV 576
           G   + + WK YG PL++ ISR+++++   I   V +ML P L+          +P S+ 
Sbjct: 517 GNNNSLTSWKPYGVPLLAQISRNEIVTGFDIHELVHKMLVPVLR----------NPDSLH 566

Query: 577 TTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSS 636
             V       S+ S+        SSK   L      LVD+SN   + S   +  IRIP S
Sbjct: 567 LAV------QSSVSTRTHSYHTDSSKCQLL------LVDDSNTVIEKS---NDAIRIPQS 611

Query: 637 STSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLV 696
           S + V +++W +  L+K +TH LE L EVF   P  K+ R E LSLY CL+AFLREEPLV
Sbjct: 612 SLATVFFINWPKADLKKIDTHHLEYLPEVFMYAPPAKRTRGEALSLYACLDAFLREEPLV 671

Query: 697 PEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLT 756
           PEDMWYCP+CKE+RQASKKLDLWRLPEVLVIHLKRFS+SRS K KLETFVNFPIHD +LT
Sbjct: 672 PEDMWYCPRCKEQRQASKKLDLWRLPEVLVIHLKRFSFSRSTKQKLETFVNFPIHDLDLT 731

Query: 757 KYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVK 816
            Y+ANK +S RQ+YELYA++NHYG M SGHYTAHIKL+DENRWYNFDDSH++ I+ED+VK
Sbjct: 732 NYIANKKTSERQIYELYAVSNHYGNMASGHYTAHIKLVDENRWYNFDDSHVASIDEDEVK 791

Query: 817 SAAAYVLFYRR 827
           +AAAYVLFYRR
Sbjct: 792 TAAAYVLFYRR 802


>gi|297742456|emb|CBI34605.3| unnamed protein product [Vitis vinifera]
          Length = 944

 Score =  755 bits (1949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/888 (47%), Positives = 549/888 (61%), Gaps = 81/888 (9%)

Query: 2   WQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLV---NDATAEDPGAG 58
           WQ +I   N + P N     S  +  ++  S  ++RP  IDNSD+V   N+   +D    
Sbjct: 57  WQRYIGQGNGEYPINGHLSDS--QRLDAVPSKTAERPGPIDNSDIVLNGNECELDDL--- 111

Query: 59  PEIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLL 118
            EI+ TL EGRDY+L+PQEVW +L  WY GGP L RK+IS G++  +  VE+Y L L+L 
Sbjct: 112 -EILRTLEEGRDYVLVPQEVWEKLFDWYKGGPALPRKMISQGITHKKFMVEIYRLCLKLT 170

Query: 119 VMPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDA 178
                  S IR+SKK ++ EL+ R C++  +  E+  IWDY+  RK A++   ++TL+++
Sbjct: 171 DSRDNSQSVIRLSKKASVHELYERVCTLKVVEQEKARIWDYFNKRKQAILVASNQTLEES 230

Query: 179 NIQMDQDILVEV-LDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGT 237
           N+QMDQDIL+EV LD    +        N  A      V +EP +SS+SIAGG + S G 
Sbjct: 231 NLQMDQDILLEVQLDGYWPSGFGMDSTGNELA-----LVPMEPPRSSVSIAGGPTLSNGY 285

Query: 238 SRNHSSEISTSPNLASA----RDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQC 293
           S+ H+S +     L S      D  + L S     RG   GL GL NLGNTCFMNSAIQC
Sbjct: 286 SKVHTSNLYQGSPLGSTFTDMEDGYDVLRSVAKGDRG---GLAGLQNLGNTCFMNSAIQC 342

Query: 294 LVHTPEFARYFREDYRREINWQNPLGM--------------------------------- 320
           LVHTP    YF +DY  EIN QNPLGM                                 
Sbjct: 343 LVHTPPIFEYFLQDYTEEINKQNPLGMNGELAFAFGELLRKLWSSGRTPVAPRAFKGKLA 402

Query: 321 --------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHI 366
                          ELLAFLLDGLHEDLNRVK KPYI++KD++GRPDEEVADE W NH 
Sbjct: 403 RFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIETKDSNGRPDEEVADECWRNHK 462

Query: 367 ARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSA 426
           ARNDS+IVDVCQGQYKSTLVCPVC+K+S+TFDPFMYLSLPL +T TR MTVTVF  DGS 
Sbjct: 463 ARNDSLIVDVCQGQYKSTLVCPVCSKISITFDPFMYLSLPLPSTVTRIMTVTVFYGDGSG 522

Query: 427 LPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKD 486
           LP  YTVTV KHG C+DL Q L   C LK  E L +AE+  H I R++++P   L+ IKD
Sbjct: 523 LPMPYTVTVLKHGYCKDLSQALAAACCLKSDENLLLAEVYEHRIYRYIENPSELLTNIKD 582

Query: 487 DDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGK 546
           ++H+ AYR+PK       L++IHR Q+Q    +    + K  G PLV+ +  +D  +   
Sbjct: 583 EEHIVAYRLPKKRAGLTRLEIIHRCQQQCTPDSLKGGERKLLGAPLVTYLG-EDAQTGAD 641

Query: 547 IQSTVQRMLSPFLKK----ESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSK 602
           I   V R+LSP  +K     S +H+   + S    T +P+   ++ S S     D +  +
Sbjct: 642 IDIAVSRLLSPLRRKTYPSSSNVHSGKENGSVSEATDNPTNSCNTQSGSGNQSTDGTELE 701

Query: 603 AVTLPNLPLQL--VDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLE 660
            ++   L  QL   DE  +     +E D  IR       I V +DW+ K  E Y+  +L 
Sbjct: 702 EMSRWELSFQLSITDERGLSCK-PIEKDSLIR---PGQFIRVMLDWTDKEHELYDASYLR 757

Query: 661 NLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWR 720
           +L EV KNG   KK R E ++L++CLEAFL+EEPL P+DMWYCP CKE RQA+KKLDLWR
Sbjct: 758 DLPEVHKNGFTAKKTRPEAITLFSCLEAFLKEEPLGPQDMWYCPNCKEHRQATKKLDLWR 817

Query: 721 LPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKN-SSRRQLYELYALTNHY 779
           LP++LV HLKRFSYSR +K+KL+T VNFPIH  +L++YV  K+ SS+  +YELYA++NHY
Sbjct: 818 LPDILVFHLKRFSYSRYLKNKLDTLVNFPIHSLDLSQYVKCKDASSQSHVYELYAISNHY 877

Query: 780 GGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           GG+G GHY+A+ KL+DENRWY+FDDSH+SP+ E ++K++AAYVLFY+R
Sbjct: 878 GGLGGGHYSAYAKLIDENRWYHFDDSHVSPVGESEIKTSAAYVLFYQR 925


>gi|359473972|ref|XP_002279130.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 9-like [Vitis
           vinifera]
          Length = 1013

 Score =  754 bits (1947), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/888 (47%), Positives = 549/888 (61%), Gaps = 81/888 (9%)

Query: 2   WQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLV---NDATAEDPGAG 58
           WQ +I   N + P N     S  +  ++  S  ++RP  IDNSD+V   N+   +D    
Sbjct: 126 WQRYIGQGNGEYPINGHLSDS--QRLDAVPSKTAERPGPIDNSDIVLNGNECELDDL--- 180

Query: 59  PEIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLL 118
            EI+ TL EGRDY+L+PQEVW +L  WY GGP L RK+IS G++  +  VE+Y L L+L 
Sbjct: 181 -EILRTLEEGRDYVLVPQEVWEKLFDWYKGGPALPRKMISQGITHKKFMVEIYRLCLKLT 239

Query: 119 VMPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDA 178
                  S IR+SKK ++ EL+ R C++  +  E+  IWDY+  RK A++   ++TL+++
Sbjct: 240 DSRDNSQSVIRLSKKASVHELYERVCTLKVVEQEKARIWDYFNKRKQAILVASNQTLEES 299

Query: 179 NIQMDQDILVEV-LDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGT 237
           N+QMDQDIL+EV LD    +        N  A      V +EP +SS+SIAGG + S G 
Sbjct: 300 NLQMDQDILLEVQLDGYWPSGFGMDSTGNELA-----LVPMEPPRSSVSIAGGPTLSNGY 354

Query: 238 SRNHSSEISTSPNLASA----RDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQC 293
           S+ H+S +     L S      D  + L S     RG   GL GL NLGNTCFMNSAIQC
Sbjct: 355 SKVHTSNLYQGSPLGSTFTDMEDGYDVLRSVAKGDRG---GLAGLQNLGNTCFMNSAIQC 411

Query: 294 LVHTPEFARYFREDYRREINWQNPLGM--------------------------------- 320
           LVHTP    YF +DY  EIN QNPLGM                                 
Sbjct: 412 LVHTPPIFEYFLQDYTEEINKQNPLGMNGELAFAFGELLRKLWSSGRTPVAPRAFKGKLA 471

Query: 321 --------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHI 366
                          ELLAFLLDGLHEDLNRVK KPYI++KD++GRPDEEVADE W NH 
Sbjct: 472 RFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIETKDSNGRPDEEVADECWRNHK 531

Query: 367 ARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSA 426
           ARNDS+IVDVCQGQYKSTLVCPVC+K+S+TFDPFMYLSLPL +T TR MTVTVF  DGS 
Sbjct: 532 ARNDSLIVDVCQGQYKSTLVCPVCSKISITFDPFMYLSLPLPSTVTRIMTVTVFYGDGSG 591

Query: 427 LPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKD 486
           LP  YTVTV KHG C+DL Q L   C LK  E L +AE+  H I R++++P   L+ IKD
Sbjct: 592 LPMPYTVTVLKHGYCKDLSQALAAACCLKSDENLLLAEVYEHRIYRYIENPSELLTNIKD 651

Query: 487 DDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGK 546
           ++H+ AYR+PK       L++IHR Q+Q    +    + K  G PLV+ +  +D  +   
Sbjct: 652 EEHIVAYRLPKKRAGLTRLEIIHRCQQQCTPDSLKGGERKLLGAPLVTYLG-EDAQTGAD 710

Query: 547 IQSTVQRMLSPFLKK----ESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSK 602
           I   V R+LSP  +K     S +H+   + S    T +P+   ++ S S     D +  +
Sbjct: 711 IDIAVSRLLSPLRRKTYPSSSNVHSGKENGSVSEATDNPTNSCNTQSGSGNQSTDGTELE 770

Query: 603 AVTLPNLPLQL--VDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLE 660
            ++   L  QL   DE  +     +E D  IR       I V +DW+ K  E Y+  +L 
Sbjct: 771 EMSRWELSFQLSITDERGLSCK-PIEKDSLIR---PGQFIRVMLDWTDKEHELYDASYLR 826

Query: 661 NLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWR 720
           +L EV KNG   KK R E ++L++CLEAFL+EEPL P+DMWYCP CKE RQA+KKLDLWR
Sbjct: 827 DLPEVHKNGFTAKKTRPEAITLFSCLEAFLKEEPLGPQDMWYCPNCKEHRQATKKLDLWR 886

Query: 721 LPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKN-SSRRQLYELYALTNHY 779
           LP++LV HLKRFSYSR +K+KL+T VNFPIH  +L++YV  K+ SS+  +YELYA++NHY
Sbjct: 887 LPDILVFHLKRFSYSRYLKNKLDTLVNFPIHSLDLSQYVKCKDASSQSHVYELYAISNHY 946

Query: 780 GGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           GG+G GHY+A+ KL+DENRWY+FDDSH+SP+ E ++K++AAYVLFY+R
Sbjct: 947 GGLGGGHYSAYAKLIDENRWYHFDDSHVSPVGESEIKTSAAYVLFYQR 994


>gi|224056675|ref|XP_002298967.1| predicted protein [Populus trichocarpa]
 gi|222846225|gb|EEE83772.1| predicted protein [Populus trichocarpa]
          Length = 933

 Score =  730 bits (1885), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/886 (45%), Positives = 550/886 (62%), Gaps = 88/886 (9%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W+  W  YV Q   +N  +G SL      +    ++RP  IDNSD++   +  + G   E
Sbjct: 58  WFSKWERYVGQGFVDNLDNGKSL-----ESQDLDAERPGPIDNSDIIEGGSGNE-GDELE 111

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGL-SQTELAVEVYPLRLQLLV 119
           +V  LLEG+DY+L+P++VW +L  WY GGPTL RK+IS G+ ++ +  VEVYPL L+L +
Sbjct: 112 LVRALLEGKDYVLVPKKVWEKLVQWYKGGPTLPRKMISQGVFNRKQFNVEVYPLCLKL-I 170

Query: 120 MPRGEC-STIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDA 178
            PR +  STIRISKK ++ EL+ R CS+  +  E+  IWDY+  +K + ++D ++TL++ 
Sbjct: 171 DPRDDSESTIRISKKASLQELYERVCSVRRVEREKASIWDYFNKQKISQLSDSNQTLEEL 230

Query: 179 NIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTS 238
           N+QMDQ+IL+E+ ++ + +        N  A      V +EP +S +SIAGG   S G S
Sbjct: 231 NLQMDQEILLELKEDSSPSQSGKDSTGNELA-----VVTLEPPRSPVSIAGGPVMSNGHS 285

Query: 239 RNHSSEISTSPNLASA-RDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHT 297
            ++S  +     L S+  D DN  G+S V  R    GL GL N+GNTCFMNSA+QCLVHT
Sbjct: 286 SSYSLNLQPGSALNSSFTDMDNGFGASSVR-RVEKGGLAGLQNMGNTCFMNSALQCLVHT 344

Query: 298 PEFARYFREDYRREINWQNPLGM------------------------------------- 320
           P+   YF +DY  EIN QNPLGM                                     
Sbjct: 345 PQLVEYFLQDYSEEINTQNPLGMHGELALAFGDLLRKLWSSGRTAVAPRVFKGKLALFAP 404

Query: 321 ----------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARND 370
                      ELLAFLLDGLHEDLNRVK KPYI+ KD  G PDEE+ADE W NH ARND
Sbjct: 405 QFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDWSGEPDEEIADECWRNHKARND 464

Query: 371 SIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPST 430
           S+IVDVCQGQYKSTLVCP+C+K+SVTFDPFMYLSLPL +T TR+MTVTVF  DGS LP  
Sbjct: 465 SVIVDVCQGQYKSTLVCPICSKISVTFDPFMYLSLPLPSTVTRSMTVTVFYGDGSGLPMP 524

Query: 431 YTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHL 490
           YT++V KHG CRDL Q LG  C LK  E L +AE+ +H I R L++P   L +IKD+D +
Sbjct: 525 YTISVLKHGNCRDLSQALGTACCLKGGESLLLAEVFDHKIYRLLENPFEPLVSIKDEDRI 584

Query: 491 AAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQST 550
            AYR          L++IHR            +  K++GTPL++ +  DD  +   I   
Sbjct: 585 VAYRFSGKGTGRRKLEIIHR-------DNFMGNVGKSFGTPLITYMD-DDSPTGADIYLA 636

Query: 551 VQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLP 610
             ++LSP  +  S   A S   + +++      EA++ +SS+   +     +  ++ +  
Sbjct: 637 ACKLLSPLKRACSPTMAHSGKENGLLS------EANAETSSSCNGQ-CEPPRDQSMGDTE 689

Query: 611 LQLVDESNVCFDLSVEGDK--------TIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENL 662
           L+      + F L +  D+           + +S   I V V+W++K  + Y++ +L++L
Sbjct: 690 LEDTSSQELSFQLFLTDDRYSSCKPIFKDSVINSGNQIKVVVEWTEKEQKLYDSSYLKDL 749

Query: 663 LEVF-KNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRL 721
            EV+ K G  TKK R E +SL++CLEAFL EEPL P+DMWYCP CKE RQA+KKLDLW L
Sbjct: 750 PEVYHKTGYTTKKTRQEAVSLFSCLEAFLTEEPLGPDDMWYCPSCKEHRQATKKLDLWML 809

Query: 722 PEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGG 781
           P++LV HLKRFSYSR +K+KL+TFV+FPIH+ +L+KYV  KN      YEL+A++NHYGG
Sbjct: 810 PDILVFHLKRFSYSRYLKNKLDTFVDFPIHNLDLSKYV-KKNDGHSFTYELFAISNHYGG 868

Query: 782 MGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           +G GHYTA  KL+DENRWY+FDDS +SP+NEDD+K++AAYVLFYRR
Sbjct: 869 LGGGHYTAFAKLIDENRWYSFDDSRVSPVNEDDIKTSAAYVLFYRR 914


>gi|356576624|ref|XP_003556430.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 10-like isoform 2
           [Glycine max]
          Length = 933

 Score =  728 bits (1878), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/887 (45%), Positives = 540/887 (60%), Gaps = 82/887 (9%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEH-FNSAGSSASKRPSGIDNSDLVNDATAEDPGAGP 59
           W+  W  YV       + D  S   H  N      + RP  IDNSD+++   + D     
Sbjct: 52  WFSRWQSYVGPCVGMLSVDKQSSDGHNANMTHPKIADRPGPIDNSDIISKGNSCD-NNNL 110

Query: 60  EIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLV 119
           +I   L EG DY+L+P++VW +L  WY GGP L RK+IS G    +  VEVYPL L++  
Sbjct: 111 DIHRMLEEGTDYVLVPEKVWERLLEWYKGGPALPRKLISQGHEHKQYNVEVYPLSLKVTD 170

Query: 120 MPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMD-RTLDDA 178
                 S +++S+K TIGELH   C I  +   + CIWDY+   K +L+   D +TL+DA
Sbjct: 171 ARDKRQSIVKLSRKATIGELHELVCKIKGVEQNKACIWDYFNLNKQSLLTVSDPKTLEDA 230

Query: 179 NIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTS 238
           N+ MDQDIL+EV  + +G++  S +   G    + + V +EPS+SS+SIAGG + S G S
Sbjct: 231 NLIMDQDILLEVSLDRDGSS-HSGMDSMG---NELALVPLEPSRSSMSIAGGPTMSNGHS 286

Query: 239 RNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTP 298
              S  +    +++S   S   +       +G   GL GL NLGNTCFMNS+IQCLVHTP
Sbjct: 287 TGSSFSLYQGSSVSS---SLTNMDDRYDVYKGERGGLAGLQNLGNTCFMNSSIQCLVHTP 343

Query: 299 EFARYFREDYRREINWQNPLGMV------------------------------------- 321
             + YF +DY  EIN  NPLGM                                      
Sbjct: 344 PLSEYFLQDYSDEINMDNPLGMCGELALAFGDLLRKLWSSGRTAIAPRAFKSKLARFAPQ 403

Query: 322 ----------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDS 371
                     ELLAFLLDGLHEDLNRVK KPYI+ KD+DGRPDEEVA E W NH+ARNDS
Sbjct: 404 FSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSDGRPDEEVASECWKNHMARNDS 463

Query: 372 IIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTY 431
           +IVDVCQGQYKSTLVCPVC K+S+TFDPFMYLSLPL +T TRTMT+TVF  DGS LP  Y
Sbjct: 464 LIVDVCQGQYKSTLVCPVCGKISITFDPFMYLSLPLPSTVTRTMTITVFYCDGSGLPMPY 523

Query: 432 TVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLA 491
           TVTV KHG CRDL Q LG  C LK  E L +AE+  H I R+L++P+  L++IKDD+H+ 
Sbjct: 524 TVTVLKHGSCRDLCQALGIACCLKSDEMLLLAEVYEHKIYRYLENPMEPLNSIKDDEHIV 583

Query: 492 AYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTV 551
           AYRV    +K   ++++HR   Q    +      K +GTPLV+ +  D    +  I+++V
Sbjct: 584 AYRVKSGARKTK-VEIMHRWLAQCSLDSMKAGDRKLFGTPLVTYLVEDPQFGAN-IEASV 641

Query: 552 QRMLSPFLKKES-----------LMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASS 600
            +ML P  K  S            + A S + S++  T     E+ S ++ N  +E  S 
Sbjct: 642 HKMLEPLRKAYSSSKSHDGKENGFISAGSDEQSNISNT---QSESQSLTTGNKEQEGTSC 698

Query: 601 SKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLE 660
            ++        QLV  +  C  LS E  +       +  + V++DW+ K  E Y+  +L 
Sbjct: 699 GES------SFQLVLTNECC--LSCEPIEKASFIKPNQVVRVFLDWTDKEHELYDASYLR 750

Query: 661 NLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWR 720
           +L EV K G   KK R E +SL++CLEAFL EEPL P+DMWYCP+CKE RQA+KKLDLW+
Sbjct: 751 DLPEVHKTGFTVKKTRQEAISLFSCLEAFLTEEPLGPDDMWYCPRCKEHRQATKKLDLWK 810

Query: 721 LPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYG 780
           LPE+LV HLKRFSYSR +K+KL+TFVNFPIH+ +LTKYV +K+     +Y+LYA++NHYG
Sbjct: 811 LPEILVFHLKRFSYSRYLKNKLDTFVNFPIHNLDLTKYVKSKDGP-SYVYDLYAISNHYG 869

Query: 781 GMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           G+G GHYTA+ KL+DEN+W++FDDSH+S + E ++KS+AAYVLFY+R
Sbjct: 870 GLGGGHYTAYCKLIDENKWFHFDDSHVSSVTEAEIKSSAAYVLFYQR 916


>gi|356576622|ref|XP_003556429.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 10-like isoform 1
           [Glycine max]
          Length = 928

 Score =  724 bits (1869), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/887 (45%), Positives = 540/887 (60%), Gaps = 87/887 (9%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEH-FNSAGSSASKRPSGIDNSDLVNDATAEDPGAGP 59
           W+  W  YV       + D  S   H  N      + RP  IDNSD+++   + D     
Sbjct: 52  WFSRWQSYVGPCVGMLSVDKQSSDGHNANMTHPKIADRPGPIDNSDIISKGNSCD-NNNL 110

Query: 60  EIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLV 119
           +I   L EG DY+L+P++VW +L  WY GGP L RK+IS G    +  VEVYPL L++  
Sbjct: 111 DIHRMLEEGTDYVLVPEKVWERLLEWYKGGPALPRKLISQGHEHKQYNVEVYPLSLKVTD 170

Query: 120 MPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMD-RTLDDA 178
                 S +++S+K TIGELH   C I  +   + CIWDY+   K +L+   D +TL+DA
Sbjct: 171 ARDKRQSIVKLSRKATIGELHELVCKIKGVEQNKACIWDYFNLNKQSLLTVSDPKTLEDA 230

Query: 179 NIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTS 238
           N+ MDQDIL+EV  + +G++  S +   G    + + V +EPS+SS+SIAGG + S G S
Sbjct: 231 NLIMDQDILLEVSLDRDGSS-HSGMDSMG---NELALVPLEPSRSSMSIAGGPTMSNGHS 286

Query: 239 RNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTP 298
              S  +    +++S   S   +       +G   GL GL NLGNTCFMNS+IQCLVHTP
Sbjct: 287 TGSSFSLYQGSSVSS---SLTNMDDRYDVYKGERGGLAGLQNLGNTCFMNSSIQCLVHTP 343

Query: 299 EFARYFREDYRREINWQNPLGMV------------------------------------- 321
             + YF +DY  EIN  NPLGM                                      
Sbjct: 344 PLSEYFLQDYSDEINMDNPLGMCGELALAFGDLLRKLWSSGRTAIAPRAFKSKLARFAPQ 403

Query: 322 ----------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDS 371
                     ELLAFLLDGLHEDLNRVK KPYI+ KD+DGRPDEEVA E W NH+ARNDS
Sbjct: 404 FSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSDGRPDEEVASECWKNHMARNDS 463

Query: 372 IIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTY 431
           +IVDVCQGQYKSTLVCPVC K+S+TFDPFMYLSLPL +T TRTMT+TVF  DGS LP  Y
Sbjct: 464 LIVDVCQGQYKSTLVCPVCGKISITFDPFMYLSLPLPSTVTRTMTITVFYCDGSGLPMPY 523

Query: 432 TVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLA 491
           TVTV KHG CRDL Q LG  C LK  E L +AE+  H I R+L++P+  L++IKDD+H+ 
Sbjct: 524 TVTVLKHGSCRDLCQALGIACCLKSDEMLLLAEVYEHKIYRYLENPMEPLNSIKDDEHIV 583

Query: 492 AYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTV 551
           AYRV    +K   ++++HR  +      +     K +GTPLV+ +  D    +  I+++V
Sbjct: 584 AYRVKSGARKTK-VEIMHRWLDNMKAGDR-----KLFGTPLVTYLVEDPQFGAN-IEASV 636

Query: 552 QRMLSPFLKKES-----------LMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASS 600
            +ML P  K  S            + A S + S++  T     E+ S ++ N  +E  S 
Sbjct: 637 HKMLEPLRKAYSSSKSHDGKENGFISAGSDEQSNISNT---QSESQSLTTGNKEQEGTSC 693

Query: 601 SKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLE 660
            ++        QLV  +  C  LS E  +       +  + V++DW+ K  E Y+  +L 
Sbjct: 694 GES------SFQLVLTNECC--LSCEPIEKASFIKPNQVVRVFLDWTDKEHELYDASYLR 745

Query: 661 NLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWR 720
           +L EV K G   KK R E +SL++CLEAFL EEPL P+DMWYCP+CKE RQA+KKLDLW+
Sbjct: 746 DLPEVHKTGFTVKKTRQEAISLFSCLEAFLTEEPLGPDDMWYCPRCKEHRQATKKLDLWK 805

Query: 721 LPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYG 780
           LPE+LV HLKRFSYSR +K+KL+TFVNFPIH+ +LTKYV +K+     +Y+LYA++NHYG
Sbjct: 806 LPEILVFHLKRFSYSRYLKNKLDTFVNFPIHNLDLTKYVKSKDGP-SYVYDLYAISNHYG 864

Query: 781 GMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           G+G GHYTA+ KL+DEN+W++FDDSH+S + E ++KS+AAYVLFY+R
Sbjct: 865 GLGGGHYTAYCKLIDENKWFHFDDSHVSSVTEAEIKSSAAYVLFYQR 911


>gi|255555787|ref|XP_002518929.1| Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
 gi|223541916|gb|EEF43462.1| Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
          Length = 938

 Score =  722 bits (1863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/893 (45%), Positives = 552/893 (61%), Gaps = 88/893 (9%)

Query: 1   WWQHWIDYVNQDQPNNTGDGS-SLLEHFNSAGSSASKRPSGIDNSDLVNDAT---AEDPG 56
           W+  W  YV Q   ++  DG  S  +H +    + + RP  IDNSDLV + +   A+D  
Sbjct: 53  WFAGWQRYVGQGNNSHLVDGQPSDSQHLHVVPLTVADRPGPIDNSDLVQNGSNIEADDL- 111

Query: 57  AGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLS-QTELAVEVYPLRL 115
              E+  TLLEGRDY+L+PQ+VW++L  WY GGPTL RK+IS G+S + +  VEVYPL L
Sbjct: 112 ---ELSRTLLEGRDYVLVPQKVWDKLVQWYKGGPTLPRKMISQGVSNKKQFNVEVYPLCL 168

Query: 116 QLLVMPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTL 175
           +L+        TIR+SKK ++ +L  R C++     E+I IWDYY  R+H+ +   +RTL
Sbjct: 169 KLVDSRDDSEFTIRLSKKASLHQLFERVCALKGTKQEKIIIWDYYNKRRHSQLIAANRTL 228

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
           +++N+QMDQ+IL+EV    +G     S +D+   E   + V +EP+++SLSIAGG + S 
Sbjct: 229 EESNLQMDQEILLEV--QGDGPYLSQSGKDSTGNE--LALVALEPARTSLSIAGGPTLSN 284

Query: 236 GTSRNHSSEISTSPNLASA-RDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCL 294
           G S  +   +     L++   D+D+  G+     R    GL GL N+GNTCFMNSA+QCL
Sbjct: 285 GHSSTYGLNLRPGGALSTGFTDNDDASGAYTAVRRSERGGLAGLQNMGNTCFMNSALQCL 344

Query: 295 VHTPEFARYFREDYRREINWQNPLGM---------------------------------- 320
           VHTP    YF +DY  EIN +NPLGM                                  
Sbjct: 345 VHTPPLVDYFLKDYSDEINAENPLGMHGELALAFGDLLRKLWSSGRTTFAPRVFKGKLAL 404

Query: 321 -------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELLAFLLDGLHEDLNRVK KPYI+ KD  GRPDEEVADE W NH A
Sbjct: 405 FAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDWGGRPDEEVADECWRNHKA 464

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDS+IVDVCQGQYKSTLVCPVC+K+S+TFDPFMYLSLPL +T TR+MT+TVF  DGSAL
Sbjct: 465 RNDSVIVDVCQGQYKSTLVCPVCSKISITFDPFMYLSLPLPSTVTRSMTITVFYGDGSAL 524

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDD 487
           P  YTV+V K+G CRDL Q L   C L   E L +AE+ +H I R  ++P  SL +IKD+
Sbjct: 525 PMPYTVSVLKNGHCRDLTQALAAACCLGSEESLLLAEVYDHRIYRLFENPYESLVSIKDE 584

Query: 488 DHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQ-TTSQWKAYGTPLVSSISRDDVISSGK 546
           +++ AYR+ +       L++I+    QE  A     S WK +G PL++ + +DD  S   
Sbjct: 585 EYIVAYRLSQRDTGKKKLEIIN----QEKSALDLRGSGWKDFGAPLLTCL-QDDSPSGAD 639

Query: 547 IQSTVQRMLSPFLK--KESLMHADSFDPSSMV--------TTVDPSGEAHSNSSSNIAKE 596
           I+  V R+LSP  +    S+ H  S   +  +         + + S E       N+  E
Sbjct: 640 IELAVSRLLSPLRRTCSSSVAHIHSGKENGFLLEANDRPSNSCNGSPEQEDQPMENVEPE 699

Query: 597 DASSSKAVTLPNLPLQLVDESNVC-FDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYN 655
           D S+ +      L  +L    + C     +  D  I+  S  + + V+++W++   + Y+
Sbjct: 700 DTSNQE------LSFRLFLTDDRCSTHKPILRDSVIK--SGGSRMKVFLEWTEMEHKTYD 751

Query: 656 THFLENLLEVF-KNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASK 714
             +L++L  V+ K G   KK R E +SL++CLEAFL EEPL P+DMWYCP CKE RQA+K
Sbjct: 752 PCYLKDLPVVYHKTGFTAKKTRQEAVSLFSCLEAFLTEEPLGPDDMWYCPGCKEHRQATK 811

Query: 715 KLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYA 774
           KLDLW LPE+LV HLKRFSYSR +K+KL+TFV+FPIH+ +L+K+V  K+  R  +YELYA
Sbjct: 812 KLDLWTLPEILVFHLKRFSYSRYLKNKLDTFVDFPIHNLDLSKFVKRKD-DRSYVYELYA 870

Query: 775 LTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           ++NHYGG+G GHYTA  KL+DE+RWYNFDDS +SP+NE D+K++AAYVLFYRR
Sbjct: 871 ISNHYGGLGGGHYTAFAKLMDESRWYNFDDSRVSPVNEADIKTSAAYVLFYRR 923


>gi|356535264|ref|XP_003536168.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 10-like isoform 1
           [Glycine max]
          Length = 926

 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/887 (46%), Positives = 540/887 (60%), Gaps = 89/887 (10%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W+  W  YV       + D  S   H  +    A  RP  IDNSD+++     D     +
Sbjct: 52  WFSRWQSYVGPCVGMLSIDKQSSDNHLITHPKIAD-RPGPIDNSDIISKGNNCDSN-NLD 109

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVM 120
           I   L EG DY+L+P++VW +L  WY GGP L RK+IS GL   +  VEVYPL L++   
Sbjct: 110 IHRMLEEGTDYVLVPEKVWERLLEWYKGGPALPRKLISQGLELKQYNVEVYPLSLKVTDA 169

Query: 121 PRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMN-DMDRTLDDAN 179
                S +++S+K TIGELH   C I  +   + CIWDY+  +K +L+     +TL+DAN
Sbjct: 170 RDNSQSIVKLSRKATIGELHELVCKIKGVEQNKACIWDYFNLKKQSLLTVSGQKTLEDAN 229

Query: 180 IQMDQDILVEV-LDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTS 238
           + MDQDIL+EV LD  + ++       N  A      V +EP +SS+SIAGG + S G S
Sbjct: 230 LIMDQDILLEVSLDRDHSSHSGMDSMGNELA-----LVPLEPPRSSVSIAGGPTMSNGHS 284

Query: 239 RNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTP 298
              S       +++S+      +       RG   GL GL NLGNTCFMNS+IQCLVHTP
Sbjct: 285 TGSSFSSYQGSSVSSSL---TNMDDKYDVYRGERGGLAGLQNLGNTCFMNSSIQCLVHTP 341

Query: 299 EFARYFREDYRREINWQNPLGM-------------------------------------- 320
             + YF +DY  EIN  NPLGM                                      
Sbjct: 342 PLSEYFLQDYSDEINMDNPLGMRGELALAFGDLLRKLWSSGRTAIAPRAFKSKLARFAPQ 401

Query: 321 ---------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDS 371
                     ELLAFLLDGLHEDLNRVK KPYI+ KD+DGRPDEEVA E W NH+ARNDS
Sbjct: 402 FSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSDGRPDEEVASECWKNHMARNDS 461

Query: 372 IIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTY 431
           +IVDVCQGQYKSTLVCPVC K+S+TFDPFMYLSLPL +T TRTMTVTVF SDGS LP  Y
Sbjct: 462 LIVDVCQGQYKSTLVCPVCGKISITFDPFMYLSLPLPSTVTRTMTVTVFYSDGSGLPMPY 521

Query: 432 TVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLA 491
           TVTV KHG CRDL Q LG  C LK  E L +AE+  H I R+L++P+  L++IKDD+H+ 
Sbjct: 522 TVTVLKHGSCRDLCQALGTACCLKSDEMLLLAEVYEHKIYRYLENPMEPLNSIKDDEHIV 581

Query: 492 AYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTV 551
           AYR+    +K   ++++HR  +   G  +     K +GTPLV+ +  D    +  I+++V
Sbjct: 582 AYRIKSGARKTK-VEIMHRWLDNMKGGDR-----KLFGTPLVTCLVEDPQFGAN-IEASV 634

Query: 552 QRMLSPFLKKES-----------LMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASS 600
            +ML+P  K  S            +  DS + S++  T     E+ S ++ N  +E  S 
Sbjct: 635 HKMLAPLRKTYSSSKSHDGKENGFISGDSDEQSNISNT---ESESLSLTTGNKEQEGTSC 691

Query: 601 SKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLE 660
            ++       LQLV  +  C  LS E  +   +   +  + V++DW+ K  E Y++ +L 
Sbjct: 692 GES------SLQLVLTNESC--LSCEPIEKASLIKPNQVVRVFLDWTDKEQELYDSSYLR 743

Query: 661 NLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWR 720
           +L EV K G   KK R E +SL++CLEAFL EEPL P+DMWYCP+CKE RQA+KKLDLW+
Sbjct: 744 DLPEVHKTGFTVKKTRQEAISLFSCLEAFLTEEPLGPDDMWYCPRCKEHRQATKKLDLWK 803

Query: 721 LPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYG 780
           LPE+LV HLKRFSYSR +K+KL+TFVNFPIH+ +LTKYV +K+     +Y LYA++NHYG
Sbjct: 804 LPEILVFHLKRFSYSRYLKNKLDTFVNFPIHNLDLTKYVKSKD-GESYVYNLYAISNHYG 862

Query: 781 GMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           G+G GHYTA+ KL+D+N+W +FDDSH+SP+ E ++KS+AAYVLFY+R
Sbjct: 863 GLGGGHYTAYCKLIDDNKWCHFDDSHVSPVTEAEIKSSAAYVLFYQR 909


>gi|356535266|ref|XP_003536169.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 10-like isoform 2
           [Glycine max]
          Length = 931

 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/887 (45%), Positives = 539/887 (60%), Gaps = 84/887 (9%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W+  W  YV       + D  S   H  +    A  RP  IDNSD+++     D     +
Sbjct: 52  WFSRWQSYVGPCVGMLSIDKQSSDNHLITHPKIAD-RPGPIDNSDIISKGNNCDSN-NLD 109

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVM 120
           I   L EG DY+L+P++VW +L  WY GGP L RK+IS GL   +  VEVYPL L++   
Sbjct: 110 IHRMLEEGTDYVLVPEKVWERLLEWYKGGPALPRKLISQGLELKQYNVEVYPLSLKVTDA 169

Query: 121 PRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMN-DMDRTLDDAN 179
                S +++S+K TIGELH   C I  +   + CIWDY+  +K +L+     +TL+DAN
Sbjct: 170 RDNSQSIVKLSRKATIGELHELVCKIKGVEQNKACIWDYFNLKKQSLLTVSGQKTLEDAN 229

Query: 180 IQMDQDILVEV-LDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTS 238
           + MDQDIL+EV LD  + ++       N  A      V +EP +SS+SIAGG + S G S
Sbjct: 230 LIMDQDILLEVSLDRDHSSHSGMDSMGNELA-----LVPLEPPRSSVSIAGGPTMSNGHS 284

Query: 239 RNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTP 298
              S       +++S+      +       RG   GL GL NLGNTCFMNS+IQCLVHTP
Sbjct: 285 TGSSFSSYQGSSVSSSL---TNMDDKYDVYRGERGGLAGLQNLGNTCFMNSSIQCLVHTP 341

Query: 299 EFARYFREDYRREINWQNPLGM-------------------------------------- 320
             + YF +DY  EIN  NPLGM                                      
Sbjct: 342 PLSEYFLQDYSDEINMDNPLGMRGELALAFGDLLRKLWSSGRTAIAPRAFKSKLARFAPQ 401

Query: 321 ---------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDS 371
                     ELLAFLLDGLHEDLNRVK KPYI+ KD+DGRPDEEVA E W NH+ARNDS
Sbjct: 402 FSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSDGRPDEEVASECWKNHMARNDS 461

Query: 372 IIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTY 431
           +IVDVCQGQYKSTLVCPVC K+S+TFDPFMYLSLPL +T TRTMTVTVF SDGS LP  Y
Sbjct: 462 LIVDVCQGQYKSTLVCPVCGKISITFDPFMYLSLPLPSTVTRTMTVTVFYSDGSGLPMPY 521

Query: 432 TVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLA 491
           TVTV KHG CRDL Q LG  C LK  E L +AE+  H I R+L++P+  L++IKDD+H+ 
Sbjct: 522 TVTVLKHGSCRDLCQALGTACCLKSDEMLLLAEVYEHKIYRYLENPMEPLNSIKDDEHIV 581

Query: 492 AYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTV 551
           AYR+    +K   ++++HR   +    +      K +GTPLV+ +  D    +  I+++V
Sbjct: 582 AYRIKSGARKTK-VEIMHRWLARCSLDSMKGGDRKLFGTPLVTCLVEDPQFGAN-IEASV 639

Query: 552 QRMLSPFLKKES-----------LMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASS 600
            +ML+P  K  S            +  DS + S++  T     E+ S ++ N  +E  S 
Sbjct: 640 HKMLAPLRKTYSSSKSHDGKENGFISGDSDEQSNISNT---ESESLSLTTGNKEQEGTSC 696

Query: 601 SKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLE 660
            ++       LQLV  +  C  LS E  +   +   +  + V++DW+ K  E Y++ +L 
Sbjct: 697 GES------SLQLVLTNESC--LSCEPIEKASLIKPNQVVRVFLDWTDKEQELYDSSYLR 748

Query: 661 NLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWR 720
           +L EV K G   KK R E +SL++CLEAFL EEPL P+DMWYCP+CKE RQA+KKLDLW+
Sbjct: 749 DLPEVHKTGFTVKKTRQEAISLFSCLEAFLTEEPLGPDDMWYCPRCKEHRQATKKLDLWK 808

Query: 721 LPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYG 780
           LPE+LV HLKRFSYSR +K+KL+TFVNFPIH+ +LTKYV +K+     +Y LYA++NHYG
Sbjct: 809 LPEILVFHLKRFSYSRYLKNKLDTFVNFPIHNLDLTKYVKSKD-GESYVYNLYAISNHYG 867

Query: 781 GMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           G+G GHYTA+ KL+D+N+W +FDDSH+SP+ E ++KS+AAYVLFY+R
Sbjct: 868 GLGGGHYTAYCKLIDDNKWCHFDDSHVSPVTEAEIKSSAAYVLFYQR 914


>gi|449456269|ref|XP_004145872.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 9-like [Cucumis
           sativus]
          Length = 915

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/882 (44%), Positives = 546/882 (61%), Gaps = 77/882 (8%)

Query: 1   WWQHWIDYVN-QDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGP 59
           W++ W  YV    +  ++ D SS  +H N   S+  +RP  IDNSD++   +        
Sbjct: 53  WFRRWQLYVGLPTEEFSSEDHSSDSQHCNMVPSNVVERPGPIDNSDIIISGSDSSENDDL 112

Query: 60  EIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLV 119
           E+   L E RDY+L+P EVW +L+ WY GGP L RK+IS G++Q   +VEVY L L+L+ 
Sbjct: 113 ELKSFLEERRDYVLVPTEVWEKLYDWYKGGPPLPRKMISQGVNQRNFSVEVYLLCLKLID 172

Query: 120 MPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDAN 179
              G   TIR+SKK TI +LH +  ++  +  E+ CI+DY+  +K ++++   +TL++ N
Sbjct: 173 ARDGSECTIRLSKKATIIDLHEKVFALKGIKQEKACIFDYFNQQKQSILDGTSQTLEELN 232

Query: 180 IQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSR 239
           +QM+Q IL+EV    +G   ++ +        + + V +EPS+S LSIAGG   S G S 
Sbjct: 233 LQMNQHILLEV----DGPTPQTGMDA---TRNELALVALEPSRSPLSIAGGPVMSNGHSS 285

Query: 240 NHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPE 299
            +  + S+     S  D  N L  S    R    GL GL NLGNTCFMNSA+QCLVHTP 
Sbjct: 286 GYGYQGSSFSTSVSDMDDRNDL--SNTAKRKEKGGLAGLQNLGNTCFMNSALQCLVHTPP 343

Query: 300 FARYFREDYRREINWQNPLGM--------------------------------------- 320
              YF +DY  EIN +NPLGM                                       
Sbjct: 344 LVEYFLQDYSEEINAENPLGMHGELAIVFGELLRKLWSGQTTIAPRVFKGKLARFAPQFS 403

Query: 321 -------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSII 373
                   ELLAFLLDGLHEDLNRVK KPY ++KD+DGRPD EVADE W  H ARNDS+I
Sbjct: 404 GYNQHDSQELLAFLLDGLHEDLNRVKRKPYFETKDSDGRPDVEVADECWRYHKARNDSLI 463

Query: 374 VDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTV 433
           VDVCQGQYKSTLVCPVC K+S+TFDPFMYLSLPL +T TR++TVTVF  DGS LP  YTV
Sbjct: 464 VDVCQGQYKSTLVCPVCEKISITFDPFMYLSLPLPSTVTRSVTVTVFYGDGSGLPMPYTV 523

Query: 434 TVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAY 493
           TV +HG  +DL   L   C L+  E L +AE+ +H I R+LD+PL SL+++KD+++L AY
Sbjct: 524 TVQRHGCTKDLTHALATACCLRSDENLLIAEVYDHRIYRYLDNPLESLTSVKDEEYLVAY 583

Query: 494 RVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQR 553
           R+P+       L++IHR  E+ P       + K +GTPLV+ +  +D  S   I + V +
Sbjct: 584 RLPQRESGRPKLEIIHRSLEKCPMERVKGMERKLFGTPLVTYLG-EDFHSGADINAAVSK 642

Query: 554 MLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQL 613
           +L P  +  S   ++    +  V+ ++       +  +N + +  S S+AV   ++ ++ 
Sbjct: 643 ILLPLRRTYSSTKSNGSKENGFVSEMN-------DEPANCSPQSESRSQAV---DIEVEE 692

Query: 614 VDESNVCFDLSVEGDKTIRI-PSSSTSIV-------VYVDWSQKLLEKYNTHFLENLLEV 665
             E+  CF L +  D+++   P    S +       V++DW++K  E Y+  ++++L  V
Sbjct: 693 ASENEPCFQLFLTDDRSLSCKPIEKDSAIKYGPLVKVFLDWTEKEHEVYDVSYIKDLPPV 752

Query: 666 FKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVL 725
            +     KK R E +SL++CLEAFL EEPL P+DMWYCP+CKE RQA+KKLDLW+LPE++
Sbjct: 753 HQTR-FMKKTRQEAISLFSCLEAFLTEEPLGPDDMWYCPRCKEHRQATKKLDLWKLPEII 811

Query: 726 VIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSG 785
           V HLKRFSYSR +K+KL+TFV+FPIH+ +L+KYV + N  +  LY LYA++NHYGG+G G
Sbjct: 812 VFHLKRFSYSRYLKNKLDTFVDFPIHNLDLSKYVKS-NDGKSYLYNLYAISNHYGGLGGG 870

Query: 786 HYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           HYTA+ KL+DE RWY+FDDS +SP+ E+++K++AAY+LFY+R
Sbjct: 871 HYTAYAKLIDEKRWYHFDDSQVSPVGEEEIKTSAAYLLFYQR 912


>gi|224117792|ref|XP_002317669.1| predicted protein [Populus trichocarpa]
 gi|222860734|gb|EEE98281.1| predicted protein [Populus trichocarpa]
          Length = 942

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/885 (44%), Positives = 538/885 (60%), Gaps = 81/885 (9%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W+  W  YV +   +N  +G S     +       +RP  IDNSD++ +  + + G   E
Sbjct: 62  WFSKWESYVGRGGVDNLDNGKS-----SEPQDLDVERPGPIDNSDII-EGRSSNEGDELE 115

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGL-SQTELAVEVYPLRLQLLV 119
           +V TLLEGRDY+L+P++VW +L  WY GGP L RK+IS G+ ++ +  VEVYPL L+L+ 
Sbjct: 116 LVRTLLEGRDYVLVPKKVWEKLVQWYKGGPVLPRKMISQGVFNKKQFNVEVYPLCLKLID 175

Query: 120 MPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDAN 179
                 STI+ISKK ++ EL+ + CS   +  E+  IWD++  +K + ++  ++TL++ +
Sbjct: 176 SRDDSESTIQISKKASLHELYEKVCSARGVEREKASIWDFFNKQKSSQLSISNQTLEELH 235

Query: 180 IQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSR 239
           +QMDQ+IL+E+   V+ +  +S     G    + + V +EP +S +SIAGG + S G S 
Sbjct: 236 LQMDQEILLEL--KVDSSPSQSGKDSTG---NELALVALEPPRSPMSIAGGPAMSNGHSS 290

Query: 240 NHSSEI-STSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTP 298
           ++S  +   S   +S +D D+  G      R    GL GL N+GNTCFMNSA+QCL+HTP
Sbjct: 291 SYSLNLWPGSAVNSSFKDMDDGFGVHSSVRRVEKGGLAGLQNMGNTCFMNSALQCLLHTP 350

Query: 299 EFARYFREDYRREINWQNPLGM-------------------------------------- 320
           +   YF +DY  EIN QNPLGM                                      
Sbjct: 351 QLVEYFLQDYSEEINTQNPLGMHGELALAFGDLLRKLWSSGRTAIAPRVFKGKLALFAPQ 410

Query: 321 ---------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDS 371
                     ELLAFLLDGLHEDLNRVK KPYI+ KD  G PDEEVADE W NH  RNDS
Sbjct: 411 FSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDWSGEPDEEVADECWRNHKTRNDS 470

Query: 372 IIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTY 431
           +IVDVCQGQYKSTLVCP+C+K+S+TFDPFMYLSLPL +T TR MTVTVF  DGS LP   
Sbjct: 471 VIVDVCQGQYKSTLVCPICSKISITFDPFMYLSLPLPSTVTRIMTVTVFHGDGSGLPMPC 530

Query: 432 TVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLA 491
           TV+V KHG CRDL Q L + C LK  E L +AE+ +H I R L++P   L +IKD+DH+ 
Sbjct: 531 TVSVLKHGNCRDLGQALDSACGLKSGESLLLAEVYDHKIYRMLENPFEPLVSIKDEDHIV 590

Query: 492 AYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTV 551
           AYR          L+++HR  +  P   +     K +GTPL++ +  DD  S   I    
Sbjct: 591 AYRFCGKGAGRKKLEIVHR-DKCTPDILKGNVG-KYFGTPLITYMD-DDSPSGADIYLAA 647

Query: 552 QRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPL 611
            R+LSP  +  +   A S + +  +  ++ +GE  S  +      D S      + N  L
Sbjct: 648 SRLLSPLKRACASTMAHSGEENGFL--LEANGETSSGCNGQCEPRDQS------MGNTEL 699

Query: 612 QLVDESNVCFDLSVEGDKTI--------RIPSSSTSIVVYVDWSQKLLEKYNTHFLENLL 663
           +      + F L +  D+ +         +  S   I V  +W++K  + Y++  L++L 
Sbjct: 700 EGTSSQELPFQLFLTDDRYLSCKPIFKDSVIKSGNRIKVVFEWTEKEQKLYDSSNLKDLP 759

Query: 664 EVF-KNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLP 722
           EV+ K G   KK R E +SL++CLEAFL EEPL P+DMWYCP CKE RQA+KKLDLW LP
Sbjct: 760 EVYHKTGYRAKKTRQEAVSLFSCLEAFLTEEPLGPDDMWYCPSCKEHRQATKKLDLWMLP 819

Query: 723 EVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGM 782
           ++LV HLKRFSYSR +K+KL+TFV+FP+H+ +L+KYV  K+  +   YELYA++NHYGG+
Sbjct: 820 DILVFHLKRFSYSRYLKNKLDTFVDFPVHNLDLSKYVKQKD-GQSYTYELYAISNHYGGL 878

Query: 783 GSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           G GHYTA  KL+D+NRWY+FDDS +SP+NE D+K++AAYVLFYRR
Sbjct: 879 GGGHYTAFAKLIDDNRWYSFDDSRVSPVNEADIKTSAAYVLFYRR 923


>gi|449507201|ref|XP_004162960.1| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal
           hydrolase 9-like [Cucumis sativus]
          Length = 915

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/882 (43%), Positives = 545/882 (61%), Gaps = 77/882 (8%)

Query: 1   WWQHWIDYVN-QDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGP 59
           W++ W  YV    +  ++ D SS  +H N   S+  +RP  IDNSD++   +        
Sbjct: 53  WFRRWQLYVGLPTEEFSSEDHSSDSQHCNMVPSNVVERPGPIDNSDIIISGSDSSENDDL 112

Query: 60  EIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLV 119
           E+   L E RDY+L+P EVW +L+ WY GGP L RK+IS G++Q   +VEVY L L+L+ 
Sbjct: 113 ELKSFLEERRDYVLVPTEVWEKLYDWYKGGPPLPRKMISQGVNQRNFSVEVYLLCLKLID 172

Query: 120 MPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDAN 179
              G   TIR+SKK TI +LH +  ++  +  E+ CI+DY+  +K ++++   +TL++ N
Sbjct: 173 ARDGSECTIRLSKKATIIDLHEKVFALKGIKQEKACIFDYFNQQKQSILDGTSQTLEELN 232

Query: 180 IQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSR 239
           +QM+Q IL+EV    +G   ++ +        + + V +EPS+S LSIAGG   S G S 
Sbjct: 233 LQMNQHILLEV----DGPTPQTGMDA---TRNELALVALEPSRSPLSIAGGPVMSNGHSS 285

Query: 240 NHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPE 299
            +  + S+     S  D  N L  S    R    GL GL NLGNTCFMNSA+QCLVHTP 
Sbjct: 286 GYGYQGSSFSTSVSDMDDRNDL--SNTAKRKEKGGLAGLQNLGNTCFMNSALQCLVHTPP 343

Query: 300 FARYFREDYRREINWQNPLGM--------------------------------------- 320
              YF +DY  EIN +NPLGM                                       
Sbjct: 344 LVEYFLQDYSEEINAENPLGMHGELAIAFGELLRKLWSGQTTIAPRVFKGKLARFAPQFS 403

Query: 321 -------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSII 373
                   ELLAFLLDGLHEDLNRVK KPY ++KD+DGRPD EVADE W  H ARNDS+I
Sbjct: 404 GYNQHDSQELLAFLLDGLHEDLNRVKRKPYFETKDSDGRPDVEVADECWRYHKARNDSLI 463

Query: 374 VDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTV 433
           VDVCQGQYKSTLVCPVC K+S+TFDPFMYLSLPL +T TR++TVTVF  DGS LP  YTV
Sbjct: 464 VDVCQGQYKSTLVCPVCEKISITFDPFMYLSLPLPSTVTRSVTVTVFYGDGSGLPMPYTV 523

Query: 434 TVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAY 493
           TV +HG  +DL   L   C L+  E L +AE+ +H I R+LD+PL SL+++KD+++L AY
Sbjct: 524 TVQRHGCTKDLTHALATACCLRSDENLLIAEVYDHRIYRYLDNPLESLTSVKDEEYLVAY 583

Query: 494 RVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQR 553
           R+P+       L++IHR  E+ P       + K +GTPLV+ +  +D  S   I + V +
Sbjct: 584 RLPQRESGRPKLEIIHRSLEKCPMERVKGMERKLFGTPLVTYLG-EDFHSGADINAAVSK 642

Query: 554 MLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQL 613
           +L P  +  S   ++    +  V+ ++       +  +N + +  S S+AV   ++ ++ 
Sbjct: 643 ILLPLRRTYSSTKSNGSKENGFVSEMN-------DEPANCSPQSESRSQAV---DIEVEE 692

Query: 614 VDESNVCFDLSVEGDKTIRI-PSSSTSIV-------VYVDWSQKLLEKYNTHFLENLLEV 665
             E+  CF   +  D+++   P    S +       V++DW++K  E Y+  ++++L  V
Sbjct: 693 ASENEPCFQXFLTDDRSLSCKPIEKDSAIKYGPLVKVFLDWTEKEHEVYDVSYIKDLPPV 752

Query: 666 FKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVL 725
            +     KK R E +SL++CLEAFL EEPL P+DMWYCP+CKE RQA+KKLDLW+LPE++
Sbjct: 753 HQTR-FMKKTRQEAISLFSCLEAFLTEEPLGPDDMWYCPRCKEHRQATKKLDLWKLPEII 811

Query: 726 VIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSG 785
           V HLKRFSYSR +K+KL+TFV+FPIH+ +L+KYV + N  +  LY LYA++NHYGG+G G
Sbjct: 812 VFHLKRFSYSRYLKNKLDTFVDFPIHNLDLSKYVKS-NDGKSYLYNLYAISNHYGGLGGG 870

Query: 786 HYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           HYTA+ KL+DE RWY+FDDS +SP+ E+++K++AAY+LFY+R
Sbjct: 871 HYTAYAKLIDEKRWYHFDDSQVSPVGEEEIKTSAAYLLFYQR 912


>gi|18413358|ref|NP_567363.1| ubiquitin carboxyl-terminal hydrolase 9 [Arabidopsis thaliana]
 gi|30681496|ref|NP_849356.1| ubiquitin carboxyl-terminal hydrolase 9 [Arabidopsis thaliana]
 gi|75249397|sp|Q93Y01.1|UBP9_ARATH RecName: Full=Ubiquitin carboxyl-terminal hydrolase 9; AltName:
           Full=Deubiquitinating enzyme 9; Short=AtUBP9; AltName:
           Full=Ubiquitin thioesterase 9; AltName:
           Full=Ubiquitin-specific-processing protease 9
 gi|15450767|gb|AAK96655.1| putative protein [Arabidopsis thaliana]
 gi|34098847|gb|AAQ56806.1| At4g10590 [Arabidopsis thaliana]
 gi|222423042|dbj|BAH19503.1| AT4G10590 [Arabidopsis thaliana]
 gi|332657501|gb|AEE82901.1| ubiquitin carboxyl-terminal hydrolase 9 [Arabidopsis thaliana]
 gi|332657502|gb|AEE82902.1| ubiquitin carboxyl-terminal hydrolase 9 [Arabidopsis thaliana]
          Length = 910

 Score =  694 bits (1792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/880 (44%), Positives = 541/880 (61%), Gaps = 91/880 (10%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W+  W  YV Q             + + S  SS + RP  IDN D++    +E     P+
Sbjct: 52  WYTSWEKYVEQST-----------KEYISGESSEASRPGPIDNHDIIE---SESDVNDPQ 97

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVM 120
           +   L+E  DY+L+PQEVW +L  WY GGP + RK+I  G      +VEVYPL L +L  
Sbjct: 98  LRRLLMERVDYVLVPQEVWKRLVEWYSGGPPIERKLICQGFYTRSYSVEVYPLCL-MLTD 156

Query: 121 PRGECST-IRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMD-RTLDDA 178
            R E  T IR+ K+ +I EL+ + C++  +  E+  IWDY+  RK+ L++ +  ++L+++
Sbjct: 157 GRDESRTVIRLGKQASIRELYEKVCALTGVPQEKAHIWDYFDKRKNGLLDSLSYKSLEES 216

Query: 179 NIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTS 238
           ++ MDQDIL+EV D  + +    S   N  A      V +EPS+SS++IAGG + S G S
Sbjct: 217 SLHMDQDILLEV-DGSSSSQSAMSSTGNELA-----LVPLEPSRSSVTIAGGPTLSNGHS 270

Query: 239 RNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTP 298
              +S  S  P + S  D  N+L   G   +G   GL GL NLGNTCFMNSA+QCL HTP
Sbjct: 271 T--TSNFSLFPRITSEDDGSNSLSILG---KGEKGGLAGLSNLGNTCFMNSALQCLAHTP 325

Query: 299 EFARYFREDYRREINWQNPLGMV------------------------------------- 321
               YF +DY  +IN  NPLGM                                      
Sbjct: 326 PIVEYFLQDYSDDINRDNPLGMCGELAIAFGDLLKKLWSSGRNSVAPRAFKTKLARFAPQ 385

Query: 322 ----------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDS 371
                     ELLAFLLDGLHEDLN+VK KPYI+ KD+D RPD+EVA+E W  H ARNDS
Sbjct: 386 FSGYNQHDSQELLAFLLDGLHEDLNKVKRKPYIELKDSDSRPDDEVAEELWNYHKARNDS 445

Query: 372 IIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTY 431
           +IVDVCQGQYKSTLVCP C K+S+TFDPFMYLS+PL +T TR+MTVTVF  DGS LP  Y
Sbjct: 446 VIVDVCQGQYKSTLVCPACGKISITFDPFMYLSVPLPSTLTRSMTVTVFYCDGSHLPMPY 505

Query: 432 TVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLA 491
           TV VPK+G  RDLI  LG  C L + E L +AE+ +H I ++ ++PL SLS+IKDD+H+ 
Sbjct: 506 TVIVPKNGSIRDLITALGTACLLAEDESLLLAEVYDHKIFKYFENPLDSLSSIKDDEHIV 565

Query: 492 AYRVPKLVKKA--VFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQS 549
           AYR+ ++ K +    L+++H  Q++    +      K +GTP V+ ++ +  +S   I +
Sbjct: 566 AYRLNQMPKGSGKAKLEILHGGQKRPILESVRGRDVKLFGTPFVTYVNTEP-LSGADIDA 624

Query: 550 TVQRMLSPFLK--KESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLP 607
            + R LSP  K    S +H  S +      TVD + E  S+  + I  +DAS  +     
Sbjct: 625 VLSRFLSPLHKVHAPSKIHNGSENGHLPDATVDEASEILSSPDTEI--DDASDREL---- 678

Query: 608 NLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFK 667
           +  + L DE  + F   ++ + +I +     +  V V+W++   E+Y++ +L +L EV K
Sbjct: 679 SFRIFLTDERGLNFK-PLQSESSISL---GIATRVLVEWNEGEHERYDSSYLSDLPEVHK 734

Query: 668 NGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVI 727
                KK R E +SL++CLEAFL EEPL P+DMW+CP CKE RQA+KKLDLW+LP++LV 
Sbjct: 735 TSFSAKKTRQESISLFSCLEAFLAEEPLGPDDMWFCPSCKEHRQANKKLDLWKLPDILVF 794

Query: 728 HLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHY 787
           HLKRF+YSR +K+K++TFVNFP+HD +L+KYV NKN  +  LYELYA++NHYGG+G GHY
Sbjct: 795 HLKRFTYSRYLKNKIDTFVNFPVHDLDLSKYVKNKN-DQSYLYELYAVSNHYGGLGGGHY 853

Query: 788 TAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           TA+ KL+D+N WY+FDDSH+S +NE ++K++AAYVLFYRR
Sbjct: 854 TAYAKLIDDNEWYHFDDSHVSSVNESEIKNSAAYVLFYRR 893


>gi|297813507|ref|XP_002874637.1| ubiquitin carboxyl-terminal hydrolase family protein [Arabidopsis
           lyrata subsp. lyrata]
 gi|297320474|gb|EFH50896.1| ubiquitin carboxyl-terminal hydrolase family protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 913

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/884 (44%), Positives = 535/884 (60%), Gaps = 97/884 (10%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W+  W  YV Q                N   S  S RP  IDN D++    +E     P+
Sbjct: 52  WYASWQKYVEQST--------------NECLSGESSRPGAIDNHDIIE---SESDANDPQ 94

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVM 120
           +   L+EG DY+L+PQEVW +L  WY GGP + RK+I  G      +VEVYPL L L   
Sbjct: 95  LRRLLVEGVDYVLVPQEVWKRLVEWYSGGPPIERKLICQGFYSRSYSVEVYPLCLMLTDG 154

Query: 121 PRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMN-DMDRTLDDAN 179
                +TIR+ K+ +I EL  + C++  +  E+  IWDY+  RK+ L++   +++L++++
Sbjct: 155 RDESRTTIRLGKQTSIRELCEKVCTMTGVAQEKAHIWDYFHKRKNGLLDPSSNKSLEESS 214

Query: 180 IQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSR 239
           +QMDQDIL+EV D  + +    S   N  A      V +EPS+S ++IAGG + S G S 
Sbjct: 215 LQMDQDILLEV-DGSSSSQYAISSAGNELA-----LVPLEPSRSRVTIAGGPTLSNGHST 268

Query: 240 NHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPE 299
             SS+ S  P + S  D  N+L   G   +G   GL GL NLGNTCFMNSA+QCL HTP 
Sbjct: 269 --SSKFSLFPRITSEDDGCNSLSILG---KGEKGGLAGLSNLGNTCFMNSALQCLAHTPP 323

Query: 300 FARYFREDYRREINWQNPLGMV-------------------------------------- 321
              YF +DY  +IN  NPLGM                                       
Sbjct: 324 IVDYFLQDYSDDINRDNPLGMCGELAIAFGDLLKKLWSSRNAVAPRSFKTKLARFAPQFS 383

Query: 322 --------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSII 373
                   ELLAFLLDGLHEDLN+VK KPYI+ KD+D RPD+EVA+E W  H ARNDS+I
Sbjct: 384 GYNQHDSQELLAFLLDGLHEDLNKVKRKPYIELKDSDSRPDDEVAEELWNYHKARNDSVI 443

Query: 374 VDVCQ------GQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           V+VCQ      GQYKSTLVCPVC K+S+TFDPFMYLS+PL +T TR+MTVTVF  DGS L
Sbjct: 444 VNVCQVFDFFQGQYKSTLVCPVCGKISITFDPFMYLSVPLPSTLTRSMTVTVFYCDGSRL 503

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDD 487
           P  YTVTVPKHG  RDLI  LG  C L   E L +AE+ +H I R+ ++PL SLS IKDD
Sbjct: 504 PMPYTVTVPKHGSIRDLITALGTACCLADDESLLLAEVYDHKIFRYFENPLDSLSAIKDD 563

Query: 488 DHLAAYRVPKLVKKA--VFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSG 545
           +H+ AYR+ ++ K +    L+++H   E++   +      K +GTPLV+ ++ D  +S  
Sbjct: 564 EHIVAYRLNQMPKGSGNAKLEILHGGLERDVLESVRGRDVKLFGTPLVTYVNTDP-LSGT 622

Query: 546 KIQSTVQRMLSPF--LKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKA 603
            I + +   LSP   +   S +H  S +      T D +  + S+  + I  +DAS  + 
Sbjct: 623 DIDAVISGFLSPLHRVHASSKIHNGSDNGHLADATTDETSASLSSPDTEI--DDASDGQL 680

Query: 604 VTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLL 663
               +  + L DE  + +   ++ + ++   S  T   V V+W++   E Y++ +L +L 
Sbjct: 681 ----SFRIFLTDERGLNYK-PLQSESSV---SPGTITKVLVEWNEGEHETYDSSYLNDLP 732

Query: 664 EVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPE 723
           EV K     KK R E +SL++CLEAFL EEPL P+DMW+CP CKE RQA+KKLDLW+LP+
Sbjct: 733 EVHKTSFSAKKTRQEAISLFSCLEAFLAEEPLGPDDMWFCPSCKEHRQANKKLDLWKLPD 792

Query: 724 VLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMG 783
           +LV HLKRF+YSR +K+K++TFVNFPI D +L+KYV NKN  +  LYELYA++NHYGG+G
Sbjct: 793 ILVFHLKRFTYSRYLKNKIDTFVNFPIQDLDLSKYVKNKN-GQSYLYELYAISNHYGGLG 851

Query: 784 SGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            GHYTA+ KL+D+N+WY+FDDSH+S +NE ++K++AAYVLFYRR
Sbjct: 852 GGHYTAYAKLIDDNKWYHFDDSHVSSVNESEIKNSAAYVLFYRR 895


>gi|42566404|ref|NP_192795.3| ubiquitin carboxyl-terminal hydrolase 10 [Arabidopsis thaliana]
 gi|166201359|sp|Q9ZSB5.2|UBP10_ARATH RecName: Full=Ubiquitin carboxyl-terminal hydrolase 10; AltName:
           Full=Deubiquitinating enzyme 10; Short=AtUBP10; AltName:
           Full=Ubiquitin thioesterase 10; AltName:
           Full=Ubiquitin-specific-processing protease 10
 gi|332657500|gb|AEE82900.1| ubiquitin carboxyl-terminal hydrolase 10 [Arabidopsis thaliana]
          Length = 923

 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/882 (44%), Positives = 541/882 (61%), Gaps = 94/882 (10%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLV-NDATAEDPGAGP 59
           W+  W +YV ++  N    G S          S + RP  IDN D++ +D+   DP    
Sbjct: 52  WYTSWQEYV-ENSANECSTGES----------SEAPRPGPIDNHDIIESDSDINDP---- 96

Query: 60  EIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLV 119
           ++   L+EG DY+L+P++VW +L  WY GGP + RK+I  G      +VEVYPL L +L 
Sbjct: 97  QLRRLLVEGEDYVLVPKQVWKRLVEWYSGGPPIERKLICQGFYTRSYSVEVYPLCL-MLT 155

Query: 120 MPRGECST-IRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMD-RTLDD 177
             R E  T IR+ K+ +I EL+ + C++  +  E+  IWDY+  RK+ L++ +  ++L++
Sbjct: 156 DGRDESRTVIRLGKQASIRELYEKVCAMTGVPQEKAHIWDYFDKRKNGLLDPLSYKSLEE 215

Query: 178 ANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGT 237
           +++ MDQDILVEV    + +    S   N  A      V +EPS+S ++IAGG + S G 
Sbjct: 216 SSLHMDQDILVEVDGLSSSSQSAMSSTGNELA-----LVPLEPSRSIVTIAGGPTLSNGH 270

Query: 238 SRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHT 297
           S   +S  S  P + S  D  ++L   G   +G   GL GL NLGNTCFMNSA+QCL HT
Sbjct: 271 ST--TSNFSLFPRITSEDDGRDSLSILG---KGEKGGLAGLSNLGNTCFMNSALQCLAHT 325

Query: 298 PEFARYFREDYRREINWQNPLGMV------------------------------------ 321
           P    YF +DY  +IN  NPLGM                                     
Sbjct: 326 PPIVEYFLQDYSDDINRDNPLGMCGELAIAFGDLLKKLWSSGRNAVAPRAFKTKLARFAP 385

Query: 322 -----------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARND 370
                      ELLAFLLDGLHEDLN+VK KPYI+ KD+D RPD+EVA+E W  H ARND
Sbjct: 386 QFSGYNQHDSQELLAFLLDGLHEDLNKVKRKPYIELKDSDSRPDDEVAEELWNYHKARND 445

Query: 371 SIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPST 430
           S+IVDVCQGQYKSTLVCPVC K+S+TFDPFMYLS+PL +T TR+MT+TVF  DGS LP  
Sbjct: 446 SVIVDVCQGQYKSTLVCPVCGKISITFDPFMYLSVPLPSTLTRSMTITVFYCDGSRLPMP 505

Query: 431 YTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHL 490
           YTV VPK G  RDLI  LG  C L + E L +AE+ +H I R+ + PL SLS IKDD+H+
Sbjct: 506 YTVIVPKQGSIRDLITALGTACCLAEDESLLLAEVYDHKIFRYFEIPLDSLSAIKDDEHI 565

Query: 491 AAYR---VPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKI 547
            AYR   +PK  +KA  L+++H  QE+    +   S  K +GTP V+ ++ +  +S   I
Sbjct: 566 VAYRLNQIPKGSRKAK-LEILHGGQERAVLDSVRGSDVKLFGTPFVTYVNTEP-LSGTDI 623

Query: 548 QSTVQRMLSPFLK--KESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVT 605
            + +   LSP  K    S +H  S +      TVD +    S+  + I   D +S + ++
Sbjct: 624 DAVISGFLSPLHKVHAPSKIHNGSDNGHLADATVDQASGILSSPDTEI---DNASDRELS 680

Query: 606 LPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEV 665
                + L DE      L+++  ++    S  T   V V+W++   E+Y++ +L +L EV
Sbjct: 681 ---FRIFLTDERG----LNIKPLQSESSISPGTVTRVLVEWNEGEHERYDSSYLSDLPEV 733

Query: 666 FKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVL 725
            K     KK R E +SL++CLEAFL EEPL P+DMW+CP CKE RQA+KKLDLW+LP++L
Sbjct: 734 HKTSFSAKKTRQESISLFSCLEAFLAEEPLGPDDMWFCPSCKEHRQANKKLDLWKLPDIL 793

Query: 726 VIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSG 785
           V HLKRF+YSR +K+K++TFVNFP+HD +L+KYV NKN  +  LYELYA++NHYGG+G G
Sbjct: 794 VFHLKRFTYSRYLKNKIDTFVNFPVHDLDLSKYVKNKN-GQSYLYELYAVSNHYGGLGGG 852

Query: 786 HYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           HYTA+ KL+D+N+WY+FDDSH+S +NE +++++AAYVLFYRR
Sbjct: 853 HYTAYAKLIDDNKWYHFDDSHVSSVNESEIRNSAAYVLFYRR 894


>gi|147827031|emb|CAN59992.1| hypothetical protein VITISV_009778 [Vitis vinifera]
          Length = 1670

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/471 (72%), Positives = 382/471 (81%), Gaps = 16/471 (3%)

Query: 371  SIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPST 430
            SI VD  +GQYKSTLVCPVCNK+SVTFDPFMYLSLPLQ+T TRTMTVTVFT DGSALPS 
Sbjct: 1134 SIWVD--KGQYKSTLVCPVCNKISVTFDPFMYLSLPLQSTITRTMTVTVFTCDGSALPSA 1191

Query: 431  YTVTVPKHGRCRDLIQVLGNICSLKQSEELKVA--------EIQNHSIQRFLDDPLISLS 482
             TVTVPK GRCRDLIQ L   CS+K +E+L +A        +I+NH I RFL+DPLI LS
Sbjct: 1192 CTVTVPKQGRCRDLIQALSGACSVKHNEKLLLARGYQMWCLQIRNHLIDRFLEDPLILLS 1251

Query: 483  TIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVI 542
            TI DDDHLAAY++PKL K  +FLQLIHR +EQE G AQ +  WK YGTPLVS IS DDVI
Sbjct: 1252 TINDDDHLAAYKIPKLSKSTIFLQLIHRREEQEIGNAQKSFGWKPYGTPLVSPISCDDVI 1311

Query: 543  SSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPS-----GEAHSNS-SSNIAKE 596
            + G IQS V  MLSP L+ E   H D  + S  V   DPS      EA ++S  S++   
Sbjct: 1312 TRGDIQSIVYTMLSPMLRTERQGHTDISETSISVAASDPSCDITTSEAFTDSIESDLKDM 1371

Query: 597  DASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNT 656
            D +S K VTL  LPLQLVDE+N C DLSV  +K I++ SSS SI+V+VDWS K LEKY+T
Sbjct: 1372 DGNSYKTVTLSKLPLQLVDENNACIDLSVGEEKPIKLSSSSMSILVFVDWSHKFLEKYDT 1431

Query: 657  HFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKL 716
            H+LENL EVFK GPVTKKARTEPLSLYTCLEAFLREEPLVPEDMW+CPQCKE+RQASKKL
Sbjct: 1432 HYLENLPEVFKYGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWFCPQCKEQRQASKKL 1491

Query: 717  DLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALT 776
            DLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHD +LT YVA+KN+SR Q+YELYALT
Sbjct: 1492 DLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDLDLTNYVAHKNNSRSQIYELYALT 1551

Query: 777  NHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            NHYGGMGSGHYTAHIKLLDENRWYNFDDSHIS INE+DVKSAAAYVLFY+R
Sbjct: 1552 NHYGGMGSGHYTAHIKLLDENRWYNFDDSHISAINEEDVKSAAAYVLFYKR 1602


>gi|242034643|ref|XP_002464716.1| hypothetical protein SORBIDRAFT_01g025350 [Sorghum bicolor]
 gi|241918570|gb|EER91714.1| hypothetical protein SORBIDRAFT_01g025350 [Sorghum bicolor]
          Length = 935

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/893 (45%), Positives = 530/893 (59%), Gaps = 97/893 (10%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           WW  W  YV        G      E F      A  RP  IDNS LV+ A   +    PE
Sbjct: 51  WWMEWQGYVGIFSHGENGT-----EQF----PQAMNRPGEIDNSKLVS-AERINGSEEPE 100

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVM 120
           +  TL EG  Y L+PQEVW +L+ WY GGP + RKVI          V+VYPL L+L + 
Sbjct: 101 LQRTLREGEHYTLVPQEVWQRLYEWYKGGPEIPRKVIFDNPIDKTYIVDVYPLCLKL-ID 159

Query: 121 PRGECSTI-RISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDAN 179
            R  C  + RIS+K  + EL+   CS+  +   +I IWDYY   K   + + + TL++A 
Sbjct: 160 GRDSCQKVFRISRKAKVHELYSMVCSLMSVEQSEIVIWDYYQRSKGKKLLNQNETLEEAQ 219

Query: 180 IQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVL----VEPSKSSLSIAGGWS--- 232
           + MDQ+IL+E+         K     +GF+ +  +  L    +EPS SS SIAGG +   
Sbjct: 220 LTMDQEILLEM---------KLGESSSGFSTRSTNDELALIPLEPSTSSFSIAGGPTFSK 270

Query: 233 -ASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAI 291
             S G   + S + S SP L  + D  N+L +    T+  + GL+GL NLGNTCFMNSAI
Sbjct: 271 GFSSGIGSSFSQDNSFSPLLRDSEDGYNSLSNG---TKDGTHGLSGLHNLGNTCFMNSAI 327

Query: 292 QCLVHTPEFARYFREDYRREINWQNPLGMV------------------------------ 321
           Q LVHTP   +YF EDY  EIN +NPLG+                               
Sbjct: 328 QSLVHTPPLVQYFLEDYTCEINTENPLGLQGELAIAFGELLRKLWSSGRTSVAPRAFKSK 387

Query: 322 -----------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWAN 364
                            ELLAFLLDGLHEDLNRVK KPYI++KDADGRPD+E A+E W  
Sbjct: 388 LSRFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKKKPYIEAKDADGRPDDEFAEECWNY 447

Query: 365 HIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDG 424
           H ARNDSIIVD  QGQYKSTLVCPVCNK+SVTFDPFMYLSLPL +T TR +TVTVF+  G
Sbjct: 448 HKARNDSIIVDRFQGQYKSTLVCPVCNKISVTFDPFMYLSLPLPSTVTRMITVTVFSGTG 507

Query: 425 SALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTI 484
             LP  YTVTV K+G CRDL + L ++C LK SE L +AE+    I R+L +P+  L +I
Sbjct: 508 DVLPMPYTVTVQKNGNCRDLTKALADVCCLKDSETLLLAEVYERRIYRYLTNPIEGLHSI 567

Query: 485 KDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISS 544
           KD+D L AYR+P   +K + L+++HR  ++     Q     K  G P+V+ I      S+
Sbjct: 568 KDEDILVAYRLPVGYEKLLRLEILHRRADRFLVEPQFNINRKLIGCPIVTCIPNG---ST 624

Query: 545 GK--IQSTVQRMLSPFLKKE------SLMHADSFDPS-SMVTTVDPSGEAHSNSSSNIAK 595
           GK  I + V  +L PF++ +      S +  +   PS   +   D    +    S + + 
Sbjct: 625 GKSDIYAAVSAVLVPFVRAKAHSPDVSAVKLNGNGPSLDGIVLTDNGTTSEEGLSISRSS 684

Query: 596 EDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYN 655
           ED +++    LP   L L DE     + +++ D    +      I V +DWS+K    YN
Sbjct: 685 EDDNAAVDELLP-FQLSLTDEKGSIRN-AIDTDSNRGL---GLVIRVLMDWSEKEHGMYN 739

Query: 656 THFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKK 715
             +++ L EVFK G ++KK R E ++L++CL+AFL+EEPL P+DMWYCP CKE RQASKK
Sbjct: 740 IDYMDGLPEVFKPGFMSKKTRQEAVNLFSCLDAFLKEEPLGPDDMWYCPGCKEHRQASKK 799

Query: 716 LDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA-NKNSSRRQLYELYA 774
           LDLWRLPE+LV+HLKRFSYSR MK+KL+TFVNFPIHD N++KYV       +  +YELYA
Sbjct: 800 LDLWRLPEILVVHLKRFSYSRYMKNKLDTFVNFPIHDLNMSKYVKLTSRGDQHPMYELYA 859

Query: 775 LTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           + NHYGG+G GHY+A+ KL++EN WY+FDDSH+S +NED+++++AAYVLFYRR
Sbjct: 860 VINHYGGLGGGHYSAYAKLVEENNWYHFDDSHVSSVNEDEIRTSAAYVLFYRR 912


>gi|4539437|emb|CAB40025.1| putative protein [Arabidopsis thaliana]
 gi|7267756|emb|CAB78182.1| putative protein [Arabidopsis thaliana]
          Length = 937

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/909 (43%), Positives = 542/909 (59%), Gaps = 122/909 (13%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W+  W  YV Q             + + S  SS + RP  IDN D++    +E     P+
Sbjct: 52  WYTSWEKYVEQST-----------KEYISGESSEASRPGPIDNHDIIE---SESDVNDPQ 97

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVM 120
           +   L+E  DY+L+PQEVW +L  WY GGP + RK+I  G      +VEVYPL L +L  
Sbjct: 98  LRRLLMERVDYVLVPQEVWKRLVEWYSGGPPIERKLICQGFYTRSYSVEVYPLCL-MLTD 156

Query: 121 PRGECST-IRISKKETIGELHRRACS-----------------------------IFYLN 150
            R E  T IR+ K+ +I EL+ + C+                             IF+  
Sbjct: 157 GRDESRTVIRLGKQASIRELYEKVCALTGVPQEKFLLMKDALFRYEDFAALPHIDIFFY- 215

Query: 151 LEQICIWDYYGHRKHALMNDMD-RTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFA 209
            +Q  IWDY+  RK+ L++ +  ++L+++++ MDQDIL+EV D  + +    S   N  A
Sbjct: 216 -KQAHIWDYFDKRKNGLLDSLSYKSLEESSLHMDQDILLEV-DGSSSSQSAMSSTGNELA 273

Query: 210 EKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTR 269
                 V +EPS+SS++IAGG + S G S   +S  S  P + S  D  N+L   G   +
Sbjct: 274 -----LVPLEPSRSSVTIAGGPTLSNGHST--TSNFSLFPRITSEDDGSNSLSILG---K 323

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDYRREINWQNPLGMV-------- 321
           G   GL GL NLGNTCFMNSA+QCL HTP    YF +DY  +IN  NPLGM         
Sbjct: 324 GEKGGLAGLSNLGNTCFMNSALQCLAHTPPIVEYFLQDYSDDINRDNPLGMCGELAIAFG 383

Query: 322 ---------------------------------------ELLAFLLDGLHEDLNRVKHKP 342
                                                  ELLAFLLDGLHEDLN+VK KP
Sbjct: 384 DLLKKLWSSGRNSVAPRAFKTKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNKVKRKP 443

Query: 343 YIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMY 402
           YI+ KD+D RPD+EVA+E W  H ARNDS+IVDVCQGQYKSTLVCP C K+S+TFDPFMY
Sbjct: 444 YIELKDSDSRPDDEVAEELWNYHKARNDSVIVDVCQGQYKSTLVCPACGKISITFDPFMY 503

Query: 403 LSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKV 462
           LS+PL +T TR+MTVTVF  DGS LP  YTV VPK+G  RDLI  LG  C L + E L +
Sbjct: 504 LSVPLPSTLTRSMTVTVFYCDGSHLPMPYTVIVPKNGSIRDLITALGTACLLAEDESLLL 563

Query: 463 AEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKA--VFLQLIHRLQEQEPGAAQ 520
           AE+ +H I ++ ++PL SLS+IKDD+H+ AYR+ ++ K +    L+++H  Q++    + 
Sbjct: 564 AEVYDHKIFKYFENPLDSLSSIKDDEHIVAYRLNQMPKGSGKAKLEILHGGQKRPILESV 623

Query: 521 TTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLK--KESLMHADSFDPSSMVTT 578
                K +GTP V+ ++ +  +S   I + + R LSP  K    S +H  S +      T
Sbjct: 624 RGRDVKLFGTPFVTYVNTEP-LSGADIDAVLSRFLSPLHKVHAPSKIHNGSENGHLPDAT 682

Query: 579 VDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSST 638
           VD + E  S+  + I  +DAS  +     +  + L DE  + F   ++ + +I   S   
Sbjct: 683 VDEASEILSSPDTEI--DDASDREL----SFRIFLTDERGLNFK-PLQSESSI---SLGI 732

Query: 639 SIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPE 698
           +  V V+W++   E+Y++ +L +L EV K     KK R E +SL++CLEAFL EEPL P+
Sbjct: 733 ATRVLVEWNEGEHERYDSSYLSDLPEVHKTSFSAKKTRQESISLFSCLEAFLAEEPLGPD 792

Query: 699 DMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKY 758
           DMW+CP CKE RQA+KKLDLW+LP++LV HLKRF+YSR +K+K++TFVNFP+HD +L+KY
Sbjct: 793 DMWFCPSCKEHRQANKKLDLWKLPDILVFHLKRFTYSRYLKNKIDTFVNFPVHDLDLSKY 852

Query: 759 VANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSA 818
           V NKN  +  LYELYA++NHYGG+G GHYTA+ KL+D+N WY+FDDSH+S +NE ++K++
Sbjct: 853 VKNKN-DQSYLYELYAVSNHYGGLGGGHYTAYAKLIDDNEWYHFDDSHVSSVNESEIKNS 911

Query: 819 AAYVLFYRR 827
           AAYVLFYRR
Sbjct: 912 AAYVLFYRR 920


>gi|357145636|ref|XP_003573712.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 10-like
           [Brachypodium distachyon]
          Length = 931

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/885 (43%), Positives = 535/885 (60%), Gaps = 86/885 (9%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           WW +W  YV   +    GD  + +       S  + RP  IDNS LV + T       PE
Sbjct: 51  WWNNWQSYVGLPR---HGDNDTDMP------SQPTNRPGEIDNSKLVLEETISG-SEEPE 100

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVM 120
           +  TL EG DY L+P+EVW +L+ WY GGP ++RKVI    +     V+VYPLRL+L+  
Sbjct: 101 LQRTLREGEDYALVPEEVWRKLYGWYKGGPVISRKVICEDPNSKRYIVDVYPLRLKLIDE 160

Query: 121 PRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANI 180
                  I+IS+K  + EL++  CS+  +   ++ IWD++   K   + + + TL++A +
Sbjct: 161 RDSSERIIQISRKAKVHELYQLVCSLISVEQSKLHIWDHFQKMKVKKLTNFNETLEEAQL 220

Query: 181 QMDQDILVEV-LDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSR 239
            MDQ+IL+E+  D+   ++  +   +N  A      V +EPS SS SIAGG + S G S 
Sbjct: 221 MMDQEILLEISADDTWSSDLSTRSFNNELA-----IVPLEPSTSSFSIAGGPTFSNGYSS 275

Query: 240 NHSSEISTSPNLAS-ARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTP 298
              S  S   +     RD+++   S     +    GL+GL NLGNTCFMNSAIQ LVHTP
Sbjct: 276 GIGSSFSQDNSFNPLQRDAEDGYSSFSNGVKDDMHGLSGLHNLGNTCFMNSAIQALVHTP 335

Query: 299 EFARYFREDYRREINWQNPLGMV------------------------------------- 321
              +YF +DY +EIN +NPLG+                                      
Sbjct: 336 PLVQYFLKDYSQEINTENPLGLQGELAVAFGDLLQKLWSAGRTSVPPRAFKSKLSRFAPQ 395

Query: 322 ----------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDS 371
                     ELLAFLLDGLHEDLNRVK KPYI++KDADGRP+EE A+E W NH ARNDS
Sbjct: 396 FSGYNQHDSQELLAFLLDGLHEDLNRVKKKPYIEAKDADGRPEEEFAEECWNNHKARNDS 455

Query: 372 IIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTY 431
           IIVD  QGQYKSTLVCP CNK+SVTFDPFMYLSLPL +T TR MTVTVF+  G +LP  Y
Sbjct: 456 IIVDKFQGQYKSTLVCPECNKISVTFDPFMYLSLPLPSTVTRMMTVTVFSGTGDSLPMPY 515

Query: 432 TVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLA 491
           TVTV K+G CRDL + L + C LK SE L +AE+ ++ + R+   PL  L  IKD+D L 
Sbjct: 516 TVTVQKNGVCRDLCKALSDACCLKDSETLLLAEVYDNRMYRYF-SPLEQLQIIKDNDKLV 574

Query: 492 AYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTV 551
           AY++P   +K + ++++HR  ++     Q     K  G+PLV+ I      S   I + V
Sbjct: 575 AYKLPVGHEKLLRVEILHRKVDRFTPELQFNITRKLIGSPLVTCIPNHST-SKADIYAAV 633

Query: 552 QRMLSPFLKK------ESLMHADSFDPS--SMVTTVDPSGEAHSNSSSNIAKEDASSSKA 603
             +L+PF++       ES +  +   PS   +V T + +      S+SN+ +E A +  +
Sbjct: 634 TAVLAPFVRAKVHTPDESAVKLNGNGPSLDGIVLTDNSACSEKGLSTSNLDEETADAELS 693

Query: 604 VTLPNLPLQLVDE-SNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENL 662
            +     L L DE  +V   +  + +  + +P     + + +DWS +  E YN  ++++L
Sbjct: 694 PSW----LSLSDEKGHVRNPIQEDSNHVVGLP-----MRLSMDWSDREHEIYNLKYMDDL 744

Query: 663 LEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLP 722
            +VFK G ++KK R E ++L++CL+AFL++EPL P+DMWYCP CKE RQA KKLDLWRLP
Sbjct: 745 PDVFKTGFMSKKTRQEAVNLFSCLDAFLKDEPLGPDDMWYCPSCKEHRQARKKLDLWRLP 804

Query: 723 EVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGM 782
           E+LV+HLKRFSYSR MK+KL+T+V FPIHD +++KY   K++S   +YELYA+ NHYGG+
Sbjct: 805 EILVVHLKRFSYSRYMKNKLDTYVTFPIHDLDMSKYA--KHTSGPPIYELYAVINHYGGL 862

Query: 783 GSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           G GHY+A+ KL++E  WY+FDDSH+S INE++ +++AAY+LFYRR
Sbjct: 863 GGGHYSAYAKLVEEESWYHFDDSHVSSINEEETRTSAAYLLFYRR 907


>gi|255549649|ref|XP_002515876.1| Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
 gi|223545031|gb|EEF46545.1| Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
          Length = 889

 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/885 (42%), Positives = 522/885 (58%), Gaps = 91/885 (10%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSAS---KRPSGIDNSDLV-NDATAEDPG 56
           WW+   D       ++  DG   + +  ++GSS +   K  + I NSDLV N    E+  
Sbjct: 34  WWKDAQD----STISSESDGKRGVLYMGTSGSSYAGPMKLINNIFNSDLVLNLRREEESL 89

Query: 57  AGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQ 116
              E  +  + GRDY L+  E+W +   W+      ++   +   ++ +++ +VYPL+L+
Sbjct: 90  QNGENGEVGVSGRDYALVSGEMWLKALKWHSDAKVASKSSKTFSAAEDDMS-DVYPLQLR 148

Query: 117 LLVMPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLD 176
           L V+       ++ISKKE   EL RRAC IF ++ E + IWD+ G      +ND  ++  
Sbjct: 149 LSVLREVNSLGVKISKKENATELFRRACKIFSVDSEMLRIWDFSGQTTLFFVNDKSKSPK 208

Query: 177 DANIQMDQDILVE--VLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS 234
           ++  Q+DQ+I++E  V    +   C+   +D+  A+    +                  S
Sbjct: 209 ESQRQLDQEIVLELQVYGLSDNMKCRDGKKDDAVAQNCNGT-----------------HS 251

Query: 235 KGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCL 294
            GTS  + S  +TS +     DS    G SG      S+GLTGL NLGNTCFMNSAIQCL
Sbjct: 252 SGTSLMNGSVSNTSTSFFRC-DSSALFGKSG---EAGSLGLTGLQNLGNTCFMNSAIQCL 307

Query: 295 VHTPEFARYFREDYRREINWQNPLGM---------------------------------- 320
            HTP+   YF  DY REIN  NPLGM                                  
Sbjct: 308 AHTPKLVDYFLGDYGREINHDNPLGMDGEIALAFGDLLRKLWAPGATPVAPRTFKSKLAR 367

Query: 321 -------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELLAFLLDGLHEDLNRVK KPY+++KD +GR DEEVADEYW NH+A
Sbjct: 368 FAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKSKPYVEAKDGEGRLDEEVADEYWQNHVA 427

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDSIIVD+CQGQYKSTLVCP+C KVSVTFDPFMYLSLPL +T  RTMT+TV ++DGS+ 
Sbjct: 428 RNDSIIVDICQGQYKSTLVCPICKKVSVTFDPFMYLSLPLPSTNIRTMTLTVVSTDGSSQ 487

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDD 487
           PS++T++VPK+G+C DL Q L   CSL   E L VAE+ N+ I R+L++P  SLS I+D 
Sbjct: 488 PSSFTISVPKYGKCEDLTQALSKACSLGIDEMLLVAEVYNNRIIRYLEEPSDSLSLIRDG 547

Query: 488 DHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKI 547
           D L AYR+ K +     +  +H+  E++    + TS WKA+G PLV  +    +++   I
Sbjct: 548 DRLVAYRLKKELDNIPLVVFMHQHMEEQYVHGKQTSSWKAFGIPLVGPVH--SLVNGSDI 605

Query: 548 QSTVQRMLSPF-LKKESLMHADSFDPSSM---VTTVDPSGEA-HSNSSSNIAKEDASSSK 602
            +   ++LSPF +  +  M++ +   S+    +T  D    A H N++ +I +E  +SS 
Sbjct: 606 HNLYLKLLSPFHIPADDGMYSCNNTTSTAKEEITEKDNGCSASHGNANPSIVEEATNSS- 664

Query: 603 AVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENL 662
             +   L   + DE  +  DL +  ++ + +        V V W++K +E+Y+T  L +L
Sbjct: 665 --SYSELQFYITDEKGIVQDLKIGINEPVPVTGVPKRFNVLVCWTEKQIEQYDTRLLSSL 722

Query: 663 LEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLP 722
            EVFK+G + K+ + E +SLY CLEAFL+EEPL P+DMW+CP CK+ RQASKKLDLWRLP
Sbjct: 723 PEVFKSGFLAKRPQ-ESVSLYKCLEAFLKEEPLGPDDMWFCPSCKKHRQASKKLDLWRLP 781

Query: 723 EVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGM 782
           E+LVIHLKRFSY+R MK+KLE +V+FP+ D +L+ Y++ KN      Y LYA++NHYG M
Sbjct: 782 EILVIHLKRFSYTRFMKNKLEAYVDFPVDDLDLSAYISYKNGQLSHRYMLYAISNHYGSM 841

Query: 783 GSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           G GHYTA +      RWY+FDDS + PI++D +K++AAYVLFYRR
Sbjct: 842 GGGHYTAFVH-HGAGRWYDFDDSLVHPISQDKIKTSAAYVLFYRR 885


>gi|115481222|ref|NP_001064204.1| Os10g0160000 [Oryza sativa Japonica Group]
 gi|78707833|gb|ABB46808.1| Ubiquitin carboxyl-terminal hydrolase family protein, expressed
           [Oryza sativa Japonica Group]
 gi|113638813|dbj|BAF26118.1| Os10g0160000 [Oryza sativa Japonica Group]
 gi|215767234|dbj|BAG99462.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222612471|gb|EEE50603.1| hypothetical protein OsJ_30790 [Oryza sativa Japonica Group]
          Length = 931

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/893 (42%), Positives = 531/893 (59%), Gaps = 102/893 (11%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           WW +W  YV   +P+   D   L +        A  RP  IDNS LV++ ++   G  PE
Sbjct: 51  WWLNWQSYVGLIKPDE-NDADMLPQ--------APSRPGEIDNSKLVSEESSS-IGDEPE 100

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVM 120
           +  TL EG DY L+PQEVW +LH WY GGP L+R+VI S  +     V+VYPLRL+L   
Sbjct: 101 LQRTLREGDDYALVPQEVWRKLHEWYKGGPELSRRVICSSPTSRSYIVDVYPLRLKLFDG 160

Query: 121 PRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANI 180
                  IRIS+K  + EL+   CS+  +   +I IWD+Y   K   + +++ T+++A +
Sbjct: 161 RDSLERIIRISRKAKVSELYSLVCSLLSVEQSKIDIWDFYQKTKGKKLINLNETVEEAQL 220

Query: 181 QMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRN 240
            MDQ+I++E   +    +   +  +N  A      + +EPS SS SIAGG + S G S  
Sbjct: 221 MMDQEIIIEAKADDAWCSDLGTRSNNELA-----LIPLEPSTSSFSIAGGPAFSNGFSSG 275

Query: 241 HS----SEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVH 296
                  + S SP L  A D  +   S+G  T+    GL+GL NLGNTCFMNSAIQ LVH
Sbjct: 276 FGSSFSQDNSFSPLLRDAEDGYSF--SNG--TKDDIHGLSGLHNLGNTCFMNSAIQSLVH 331

Query: 297 TPEFARYFREDYRREINWQNPLGMV----------------------------------- 321
           TP    YF +DY REIN +NPLG+                                    
Sbjct: 332 TPPLVEYFLQDYSREINTENPLGLQGELATAFGELLRKLWSAGRTSIAPRPFKTKLSRFA 391

Query: 322 ------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARN 369
                       ELLAFLLDGLHEDLNRVK KPYI++KDADGRPDEE+A+E W  H ARN
Sbjct: 392 PQFSGYNQHDSQELLAFLLDGLHEDLNRVKKKPYIEAKDADGRPDEELAEECWNYHKARN 451

Query: 370 DSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPS 429
           DSIIVD  QGQYKSTLVCP C K+SVTFDPFMYLSLPL +T TR + VTVF+  G ALP 
Sbjct: 452 DSIIVDKFQGQYKSTLVCPDCKKISVTFDPFMYLSLPLPSTVTRMINVTVFSGTGDALPM 511

Query: 430 TYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDH 489
            YTV V K+G C DLI+ L  +C L+  E L +AE+ +H I R+ + P   L  +KD+D 
Sbjct: 512 PYTVKVQKNGVCGDLIKSLSVMCCLQSCETLLLAEVYDHRIYRYWN-PSEPLCHVKDEDK 570

Query: 490 LAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQS 549
           L AYR+P   +  + ++++HR+ ++    +      K  G+PLV+ I  D       I +
Sbjct: 571 LVAYRLPVGSENLLRVEILHRVVDRYTSESMFNLSRKLIGSPLVTCIPSDST-RKADIYA 629

Query: 550 TVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSG-EAHSNSSS----NIAKEDASSSKAV 604
           TV  +L+PF++ +             V T+D S  + +SN  S     +     +  + V
Sbjct: 630 TVSSLLAPFVRAK-------------VHTLDESATKLNSNGPSLDGIVLTDNGVTCEEDV 676

Query: 605 TLPNLPLQLVDESNVCFDLSVEGDKTIR----------IPSSSTSIVVYVDWSQKLLEKY 654
           +  N+  +  DE  + F L +  DK  +          +P S+  +++  DWS +  E Y
Sbjct: 677 STSNVDEEAADEEVLPFQLWLTDDKANKREHIDADSNGVPGSTMRLLM--DWSDREHEVY 734

Query: 655 NTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASK 714
           +  +++ L  VFK G ++KK R E ++L++CL+AFL++EPL P+DMWYCP+C E +QASK
Sbjct: 735 DIKYMDELSVVFKPGFMSKKNRQEAVNLFSCLDAFLKDEPLGPDDMWYCPRCTEHKQASK 794

Query: 715 KLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYA 774
           KLDLWRLPE+LV+HLKRFSYSR MK+KL+TFVNFPIHD ++++Y  +    +  +YELYA
Sbjct: 795 KLDLWRLPEILVVHLKRFSYSRFMKNKLDTFVNFPIHDLDMSRYANHSRGDQPPIYELYA 854

Query: 775 LTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           + NHYGGMG GHY+A+ KL++E+ WY+FDDSH+S + E+D+++++AY+LFYRR
Sbjct: 855 VINHYGGMGGGHYSAYAKLVEEDSWYHFDDSHVSSVGEEDIRTSSAYLLFYRR 907


>gi|297846262|ref|XP_002891012.1| ubiquitin carboxyl-terminal hydrolase family protein [Arabidopsis
           lyrata subsp. lyrata]
 gi|297336854|gb|EFH67271.1| ubiquitin carboxyl-terminal hydrolase family protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 894

 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/851 (43%), Positives = 523/851 (61%), Gaps = 88/851 (10%)

Query: 32  SSASKRPSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGPT 91
           +S   RP  IDN D+++   +E   + P++   L EG DY L+PQ+VW +L  WY GGP 
Sbjct: 64  TSEVTRPGPIDNHDIID---SESDASDPQLRIMLEEGVDYTLVPQQVWRKLVEWYKGGPP 120

Query: 92  LARKVISSGLSQTELAVEVYPLRLQLLVMPRGECSTIRISKKETIGELHRRACSIFYLNL 151
           L RK+IS G      +VEVYPL L+L        + IR+SK+ +IG+L+   C+   +  
Sbjct: 121 LPRKLISQGFYTKSFSVEVYPLCLKLTDSRDESTTIIRLSKQASIGQLYEMVCAGRGVAK 180

Query: 152 EQICIWDYYGHRKHALMN-DMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAE 210
           E+  IWDY+  +K  L++   +++++++ +Q++QDIL++V          SS  D   A 
Sbjct: 181 EKARIWDYFEKKKSVLLDPSSEKSVEESGLQLNQDILLDV------DGSASSQYDMSLAG 234

Query: 211 KKASSVLVEPSKSSLS--IAGGWSASKGTSRNHSSEISTSPNLASARD-SDNTLGSSGVT 267
            + + V +EP++S     + GG + S G S  + S+ S     A   D S +T G     
Sbjct: 235 NELALVPLEPTRSDAMDIVRGGGNLSNGHS--NGSKFSLFGRNAFEDDVSSSTFG----- 287

Query: 268 TRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDYRREINWQNPLGM------- 320
            +G   GL GL NLGNTCFMNS +QCL HTP    YF +DY  +IN +NPLGM       
Sbjct: 288 -KGERRGLGGLQNLGNTCFMNSTLQCLAHTPPIVEYFLQDYSSDINAENPLGMRGELAIA 346

Query: 321 ----------------------------------------VELLAFLLDGLHEDLNRVKH 340
                                                    E+LAFLLDGLHEDLN+VK 
Sbjct: 347 FGELLRKLWSSGQNAVAPRAFKTKLARFAPQFSGYNQHDSQEMLAFLLDGLHEDLNKVKR 406

Query: 341 KPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPF 400
           KPYI++KD+DGRPD+EVA+E W  H ARNDS+IVDVCQGQYKSTLVCP C K+S+TFDPF
Sbjct: 407 KPYIEAKDSDGRPDDEVAEEKWKYHKARNDSVIVDVCQGQYKSTLVCPDCGKISITFDPF 466

Query: 401 MYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEEL 460
           MYLSLPL ++ TR+MTVTVF  DGS LP  YTVTVPK G CRDL   LG  C L   E L
Sbjct: 467 MYLSLPLPSSRTRSMTVTVFYGDGSHLPMPYTVTVPKDGSCRDLSNALGTACCLNNDESL 526

Query: 461 KVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVK--KAVFLQLIHRLQEQEPGA 518
            +AE+ +H + ++ ++PL  L+ IKD++ + AYR  ++ K    V L+++H  QE+    
Sbjct: 527 LLAEVYDHKVFKYFENPLELLNGIKDNERIVAYRFNQMHKGLGKVKLEILHGEQEKYDSG 586

Query: 519 AQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLK--KESLMHADSFDPSSMV 576
                  K +GTPLV+ I+++ +  S  I +++  +LSP  +    S++H++  + +S V
Sbjct: 587 RGP----KLFGTPLVTYINKEPLTGS-DIAASIFGLLSPLRRVHMSSIVHSE--NENSHV 639

Query: 577 TTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSS 636
             V     A  +S S  +++  +   AV    L   L+ + +  F L +    ++  P S
Sbjct: 640 PDV-----ADESSRSASSRDTETEDNAVDDRELSFSLLPDYH-SFSLQLLDSDSVVNPGS 693

Query: 637 STSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLV 696
            T ++  V W++K  EKY++ +L +L EV K   + KK R E +SL++CLEAFL EEPL 
Sbjct: 694 VTKVL--VKWNEKEHEKYDSSYLNDLPEVHKTSFLAKKIRQEEISLFSCLEAFLAEEPLG 751

Query: 697 PEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLT 756
           P+DMWYCP CKE RQA+KKLDLW+LP++LV HLKRF+YSR  K+K++T VNFPIH  +L+
Sbjct: 752 PDDMWYCPGCKEHRQANKKLDLWKLPDILVFHLKRFTYSRYFKNKIDTLVNFPIHGLDLS 811

Query: 757 KYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVK 816
           KYV NK+  +  LYELYA++NHYGG+G GHYTA+ KL+DEN+WY+FDDS +S +NE ++K
Sbjct: 812 KYVTNKD-GQSYLYELYAISNHYGGLGGGHYTAYAKLMDENKWYDFDDSRVSAVNEYEIK 870

Query: 817 SAAAYVLFYRR 827
           + AAYVLFY+R
Sbjct: 871 TPAAYVLFYQR 881


>gi|4115922|gb|AAD03433.1| contains similarity to ubiquitin carboxyl-terminal hydrolase family
           2 (Pfam:PF00443, score=48.3, E=3.5e-13, N=2) and
           (Pfam:PF00442, Score=40.0 E=5.2e-08, N=1) [Arabidopsis
           thaliana]
          Length = 1028

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/949 (41%), Positives = 542/949 (57%), Gaps = 164/949 (17%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLV-NDATAEDPGAGP 59
           W+  W +YV ++  N    G S          S + RP  IDN D++ +D+   DP    
Sbjct: 52  WYTSWQEYV-ENSANECSTGES----------SEAPRPGPIDNHDIIESDSDINDP---- 96

Query: 60  EIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLV 119
           ++   L+EG DY+L+P++VW +L  WY GGP + RK+I  G      +VEVYPL L +L 
Sbjct: 97  QLRRLLVEGEDYVLVPKQVWKRLVEWYSGGPPIERKLICQGFYTRSYSVEVYPLCL-MLT 155

Query: 120 MPRGECST-IRISKKETIGELHRRACSI-------------------------------- 146
             R E  T IR+ K+ +I EL+ + C++                                
Sbjct: 156 DGRDESRTVIRLGKQASIRELYEKVCAMTGVPQEKFLLMKNALFRYEVVLFAALPHIDNF 215

Query: 147 FYLNLEQICIWDYYGHRKHALMNDMD-RTLDDANIQMDQDILVEVLDNVNGTNCKSSIQD 205
           FY   +Q  IWDY+  RK+ L++ +  ++L+++++ MDQDILVEV    + +    S   
Sbjct: 216 FY---KQAHIWDYFDKRKNGLLDPLSYKSLEESSLHMDQDILVEVDGLSSSSQSAMSSTG 272

Query: 206 NGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSG 265
           N  A      V +EPS+S ++IAGG + S G S   +S  S  P + S  D  ++L   G
Sbjct: 273 NELA-----LVPLEPSRSIVTIAGGPTLSNGHST--TSNFSLFPRITSEDDGRDSLSILG 325

Query: 266 VTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDYRREINWQNPLGMV---- 321
              +G   GL GL NLGNTCFMNSA+QCL HTP    YF +DY  +IN  NPLGM     
Sbjct: 326 ---KGEKGGLAGLSNLGNTCFMNSALQCLAHTPPIVEYFLQDYSDDINRDNPLGMCGELA 382

Query: 322 -------------------------------------------ELLAFLLDGLHEDLNRV 338
                                                      ELLAFLLDGLHEDLN+V
Sbjct: 383 IAFGDLLKKLWSSGRNAVAPRAFKTKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNKV 442

Query: 339 KHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFD 398
           K KPYI+ KD+D RPD+EVA+E W  H ARNDS+IVDVCQGQYKSTLVCPVC K+S+TFD
Sbjct: 443 KRKPYIELKDSDSRPDDEVAEELWNYHKARNDSVIVDVCQGQYKSTLVCPVCGKISITFD 502

Query: 399 PFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSE 458
           PFMYLS+PL +T TR+MT+TVF  DGS LP  YTV VPK G  RDLI  LG  C L + E
Sbjct: 503 PFMYLSVPLPSTLTRSMTITVFYCDGSRLPMPYTVIVPKQGSIRDLITALGTACCLAEDE 562

Query: 459 ELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYR---VPKLVKKAVFLQLIHRLQEQE 515
            L +AE+ +H I R+ + PL SLS IKDD+H+ AYR   +PK  +KA  L+++H  QE+ 
Sbjct: 563 SLLLAEVYDHKIFRYFEIPLDSLSAIKDDEHIVAYRLNQIPKGSRKAK-LEILHGGQERA 621

Query: 516 PGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLK--KESLMHADSFDPS 573
              +   S  K +GTP V+ ++ +  +S   I + +   LSP  K    S +H  S +  
Sbjct: 622 VLDSVRGSDVKLFGTPFVTYVNTEP-LSGTDIDAVISGFLSPLHKVHAPSKIHNGSDNGH 680

Query: 574 SMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRI 633
               TVD +    S+  + I   D +S + ++     + L DE      L+++  ++   
Sbjct: 681 LADATVDQASGILSSPDTEI---DNASDRELS---FRIFLTDERG----LNIKPLQSESS 730

Query: 634 PSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREE 693
            S  T   V V+W++   E+Y++ +L +L EV K     KK R E +SL++CLEAFL EE
Sbjct: 731 ISPGTVTRVLVEWNEGEHERYDSSYLSDLPEVHKTSFSAKKTRQESISLFSCLEAFLAEE 790

Query: 694 PLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDF 753
           PL P+DMW+CP CKE RQA+KKLDLW+LP++LV HLKRF+YSR +K+K++TFVNFP+HD 
Sbjct: 791 PLGPDDMWFCPSCKEHRQANKKLDLWKLPDILVFHLKRFTYSRYLKNKIDTFVNFPVHDL 850

Query: 754 NLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIK--------------------- 792
           +L+KYV NKN  +  LYELYA++NHYGG+G GHYTA+ K                     
Sbjct: 851 DLSKYVKNKN-GQSYLYELYAVSNHYGGLGGGHYTAYAKVDLYNIYPLDSCPIVLATRSS 909

Query: 793 --------------LLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
                         L+D+N+WY+FDDSH+S +NE +++++AAYVLFYRR
Sbjct: 910 VSSLFDHYVSIFMQLIDDNKWYHFDDSHVSSVNESEIRNSAAYVLFYRR 958



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 34/40 (85%)

Query: 724  VLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKN 763
            +L+ HLK+F+YSR +K+K+ TFVNFPIHD NL+KYV  KN
Sbjct: 987  ILLFHLKQFTYSRYLKNKINTFVNFPIHDLNLSKYVKYKN 1026


>gi|4539435|emb|CAB40023.1| putative protein [Arabidopsis thaliana]
 gi|7267754|emb|CAB78180.1| putative protein [Arabidopsis thaliana]
          Length = 928

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/895 (42%), Positives = 534/895 (59%), Gaps = 115/895 (12%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLV-NDATAEDPGAGP 59
           W+  W +YV ++  N    G S          S + RP  IDN D++ +D+   DP    
Sbjct: 52  WYTSWQEYV-ENSANECSTGES----------SEAPRPGPIDNHDIIESDSDINDP---- 96

Query: 60  EIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLV 119
           ++   L+EG DY+L+P++VW +L     GGP + RK+I  G      +VEVYPL L +L 
Sbjct: 97  QLRRLLVEGEDYVLVPKQVWKRLVEC--GGPPIERKLICQGFYTRSYSVEVYPLCL-MLT 153

Query: 120 MPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMD-RTLDDA 178
             R E      S+  +I EL+ + C++  +  E+  IWDY+  RK+ L++ +  ++L+++
Sbjct: 154 DGRDE------SRTASIRELYEKVCAMTGVPQEKAHIWDYFDKRKNGLLDPLSYKSLEES 207

Query: 179 NIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTS 238
           ++ MDQDILVEV    + +    S   N  A      V +EPS+S ++IAGG + S G S
Sbjct: 208 SLHMDQDILVEVDGLSSSSQSAMSSTGNELA-----LVPLEPSRSIVTIAGGPTLSNGHS 262

Query: 239 RNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTP 298
              +S  S  P + S  D  ++L   G   +G   GL GL NLGNTCFMNSA+QCL HTP
Sbjct: 263 T--TSNFSLFPRITSEDDGRDSLSILG---KGEKGGLAGLSNLGNTCFMNSALQCLAHTP 317

Query: 299 EFARYFREDYRRE--------------------INWQNPLGMV----------------- 321
               YF +DY  +                    +N+Q  L +                  
Sbjct: 318 PIVEYFLQDYMLDTYMFYFLVMVLTCILNIILTLNFQGELAIAFGDLLKKLWSSGRNAVA 377

Query: 322 ------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEV 357
                                   ELLAFLLDGLHEDLN+VK KPYI+ KD+D RPD+EV
Sbjct: 378 PRAFKTKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNKVKRKPYIELKDSDSRPDDEV 437

Query: 358 ADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTV 417
           A+E W  H ARNDS+IVDVCQGQYKSTLVCPVC K+S+TFDPFMYLS+PL +T TR+MT+
Sbjct: 438 AEELWNYHKARNDSVIVDVCQGQYKSTLVCPVCGKISITFDPFMYLSVPLPSTLTRSMTI 497

Query: 418 TVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDP 477
           TVF  DGS LP  YTV VPK G  RDLI  LG  C L + E L +AE+ +H I R+ + P
Sbjct: 498 TVFYCDGSRLPMPYTVIVPKQGSIRDLITALGTACCLAEDESLLLAEVYDHKIFRYFEIP 557

Query: 478 LISLSTIKDDDHLAAYR---VPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVS 534
           L SLS IKDD+H+ AYR   +PK  +KA  L+++H  QE+    +   S  K +GTP V+
Sbjct: 558 LDSLSAIKDDEHIVAYRLNQIPKGSRKAK-LEILHGGQERAVLDSVRGSDVKLFGTPFVT 616

Query: 535 SISRDDVISSGKIQSTVQRMLSPFLK--KESLMHADSFDPSSMVTTVDPSGEAHSNSSSN 592
            ++ +  +S   I + +   LSP  K    S +H  S +      TVD +    S+  + 
Sbjct: 617 YVNTEP-LSGTDIDAVISGFLSPLHKVHAPSKIHNGSDNGHLADATVDQASGILSSPDTE 675

Query: 593 IAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLE 652
           I   D +S + ++     + L DE      L+++  ++    S  T   V V+W++   E
Sbjct: 676 I---DNASDRELS---FRIFLTDERG----LNIKPLQSESSISPGTVTRVLVEWNEGEHE 725

Query: 653 KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQA 712
           +Y++ +L +L EV K     KK R E +SL++CLEAFL EEPL P+DMW+CP CKE RQA
Sbjct: 726 RYDSSYLSDLPEVHKTSFSAKKTRQESISLFSCLEAFLAEEPLGPDDMWFCPSCKEHRQA 785

Query: 713 SKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYEL 772
           +KKLDLW+LP++LV HLKRF+YSR +K+K++TFVNFP+HD +L+KYV NKN  +  LYEL
Sbjct: 786 NKKLDLWKLPDILVFHLKRFTYSRYLKNKIDTFVNFPVHDLDLSKYVKNKN-GQSYLYEL 844

Query: 773 YALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           YA++NHYGG+G GHYTA+ KL+D+N+WY+FDDSH+S +NE +++++AAYVLFYRR
Sbjct: 845 YAVSNHYGGLGGGHYTAYAKLIDDNKWYHFDDSHVSSVNESEIRNSAAYVLFYRR 899


>gi|42562472|ref|NP_174562.2| ubiquitin carboxyl-terminal hydrolase 4/11/15 [Arabidopsis
           thaliana]
 gi|166201360|sp|Q9MAQ3.2|UBP11_ARATH RecName: Full=Putative ubiquitin carboxyl-terminal hydrolase 11;
           AltName: Full=Deubiquitinating enzyme 11; Short=AtUBP11;
           AltName: Full=Ubiquitin thioesterase 11; AltName:
           Full=Ubiquitin-specific-processing protease 11
 gi|332193411|gb|AEE31532.1| ubiquitin carboxyl-terminal hydrolase 4/11/15 [Arabidopsis
           thaliana]
          Length = 892

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/880 (42%), Positives = 522/880 (59%), Gaps = 103/880 (11%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W+  W  +V             L E F S   S   RP  IDN D+++   +E   + P+
Sbjct: 50  WYTRWQRFVGL-----------LTEEFRSGEPSEVTRPGPIDNHDIID---SESDASDPQ 95

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVM 120
           +   L EG DY L+ QEVW +L  WY GGP + RK+IS G      +VEVY L L L   
Sbjct: 96  LRMMLEEGVDYTLVQQEVWRKLVKWYKGGPPVPRKLISQGFYTKSFSVEVYLLCLTLTDS 155

Query: 121 PRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMN-DMDRTLDDAN 179
                + IR+SK+ +IG+L+   C+   +  E+  IWDY+  +K  L++   ++++++A 
Sbjct: 156 RDESTTIIRLSKQASIGQLYEMVCAGKGVAKEKARIWDYFEKKKSVLLDPSSEQSVEEAG 215

Query: 180 IQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLS--IAGGWSASKGT 237
           +Q +QDIL+EV    +G+     +     AE + + V +EP +S     + GG + S G 
Sbjct: 216 LQFNQDILLEV----DGSASSQFVM--SLAENELAMVPLEPMRSDAMDIVRGGGTLSNG- 268

Query: 238 SRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHT 297
              HS+    S      R++     SS    +G   GL GL NLGNTCFMNS +QCL HT
Sbjct: 269 ---HSNGFKFS---FFGRNTFKDDVSSRTFGKGEKRGLGGLQNLGNTCFMNSTLQCLAHT 322

Query: 298 PEFARYFREDYRREINWQNPLGM------------------------------------- 320
           P    YF +DYR +IN +NPLGM                                     
Sbjct: 323 PPIVEYFLQDYRSDINAKNPLGMRGELAIAFGELLRKLWSSGQNTVAPRAFKTKLARFAP 382

Query: 321 ----------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARND 370
                      E+LAFLLDGLHEDLN+VK KPYI++KD+DGRPD+EVA+E W  H ARND
Sbjct: 383 QFSGYNQHDSQEMLAFLLDGLHEDLNKVKRKPYIEAKDSDGRPDDEVAEEKWKYHKARND 442

Query: 371 SIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPST 430
           S+IVDV QGQYKSTLVCP C K+S+TFDPFMYLSLPL ++ TR+MTVTVF  DGS LP  
Sbjct: 443 SVIVDVFQGQYKSTLVCPDCGKISITFDPFMYLSLPLPSSRTRSMTVTVFYGDGSHLPMP 502

Query: 431 YTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHL 490
           YTVTVPK G CRDL   LG  C L   E L +AE+ +H + ++ ++P   L+ IKD++H+
Sbjct: 503 YTVTVPKDGSCRDLSNALGTACCLDNDESLLLAEVYDHKVFKYYENPRELLNGIKDNEHI 562

Query: 491 AAYRVPKLVK--KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQ 548
            AYR  ++ K    V L+++H  QE+           K +GTPLV+ I+++  +S   I 
Sbjct: 563 VAYRFKQMHKGPGKVKLEILHGEQEKSSDRGP-----KCFGTPLVTYINKEP-LSGTDIA 616

Query: 549 STVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPN 608
           +++  +LSP  +    +H      S +V + + +G     SS +I   D  +        
Sbjct: 617 TSISGLLSPLRR----VHM-----SCVVNSGNENGHVPDESSRSILSRDTETEDNDR--E 665

Query: 609 LPLQLVDESNVCFDLS-VEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFK 667
           L L L+ +    F+L  +E D  +  P S T ++  V W++K  EKY++ +L +L +V K
Sbjct: 666 LSLSLLRDY-YSFNLQPLESDSVVN-PGSVTKVL--VKWNEKEHEKYDSSYLNDLPKVHK 721

Query: 668 NGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVI 727
           N  + KK   E +SL++CLEAFL EEPL P+DMWYCP CKE RQA+KKLDLW+LP++LV 
Sbjct: 722 N-VLAKKTMQEGISLFSCLEAFLAEEPLGPDDMWYCPGCKEHRQANKKLDLWKLPDILVF 780

Query: 728 HLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHY 787
           HLKRF+YSR  K+K++T VNF IHD +L+KYV N++  +  LYELYA++NHYGG+G GHY
Sbjct: 781 HLKRFTYSRYFKNKIDTLVNFHIHDLDLSKYVKNED-GQSYLYELYAISNHYGGLGGGHY 839

Query: 788 TAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           TA+ KL+DE +WYNFDDS +S +NE ++K++AAYVLFY+R
Sbjct: 840 TAYAKLMDETKWYNFDDSRVSAVNESEIKTSAAYVLFYQR 879


>gi|449444827|ref|XP_004140175.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like [Cucumis
           sativus]
          Length = 877

 Score =  640 bits (1651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/886 (43%), Positives = 509/886 (57%), Gaps = 100/886 (11%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLV-NDATAEDPGAGP 59
           WW+   D +  D     G   S L    S+ +   K  + I +SDLV N    ED     
Sbjct: 30  WWKDAQDSLTGDADGKRG--HSFLASPGSSYAGPMKIINSIFSSDLVFNLRREEDSSQNS 87

Query: 60  EIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLV 119
           E  +  + GRDY L+  E+W +   W+    +  R   S  +++  +A +VYPL+L+L +
Sbjct: 88  ENGEVGISGRDYALVSGEMWVEALKWHSDSKSSTRNGGSFSVAEDNIA-DVYPLQLRLSI 146

Query: 120 MPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDAN 179
                   +RISKK+ + EL RRAC +F +  E + IWD+ GH      N       +  
Sbjct: 147 QREANLLGVRISKKDNVVELFRRACKLFNVESELLRIWDFSGHTISLFSNS------NKQ 200

Query: 180 IQMDQDILVE--VLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGT 237
            Q DQ++L+E  V    +   CK   +D     + A+S+L   S +SL + G    + GT
Sbjct: 201 RQSDQEVLLELQVYGLSDFIKCKEGKKD-----ELANSILGNSSATSLMMNG----ASGT 251

Query: 238 SRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHT 297
                  +++S    S+R++              S+GLTGL NLGNTCFMNSA+QCLVHT
Sbjct: 252 GSASCFRVNSSVFSGSSREA-------------GSLGLTGLQNLGNTCFMNSALQCLVHT 298

Query: 298 PEFARYFREDYRREINWQNPLGM------------------------------------- 320
           P+   YF  DY REIN  NPLGM                                     
Sbjct: 299 PKLVDYFLGDYGREINHDNPLGMNGEIALAFGDMLRKLWAPGASPVAPRTFKSKLARFAP 358

Query: 321 ----------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARND 370
                      ELLAFLLDGLHEDLNRVK KPY+++KD DGR D EVADEYW NH+ARND
Sbjct: 359 QFSGCNQHDSQELLAFLLDGLHEDLNRVKKKPYVEAKDGDGRSDNEVADEYWQNHLARND 418

Query: 371 SIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPST 430
           SIIVDVCQGQYKSTLVCP+C KVS TFDPFMYLSLPL +TT RTMT+TV ++DGS  P+ 
Sbjct: 419 SIIVDVCQGQYKSTLVCPICKKVSTTFDPFMYLSLPLPSTTMRTMTLTVVSTDGST-PAP 477

Query: 431 YTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHL 490
           YT+TVPK G+  DLI+ L   CSLK  E L VAE+ N+ I R+L++P  SLS I+D D L
Sbjct: 478 YTITVPKSGKWEDLIKALSIACSLKADETLLVAEVYNNRIIRYLEEPADSLSLIRDGDRL 537

Query: 491 AAYRVPK---LVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKI 547
            AYR+ K    V  AVF+    R++EQ     +TTS  KA+G PLV+ +      +   I
Sbjct: 538 VAYRLAKDEEQVPLAVFMH--QRIEEQYINGKRTTS-LKAFGFPLVAKLPGG--FNGSDI 592

Query: 548 QSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSN------IAKEDASSS 601
           +   +++LSP+  + S   A   + +S V T + +   +  SS++      +  ED  + 
Sbjct: 593 KDIYKKLLSPY--QVSAPDALEENHTSDVDTTEKTEVENGTSSTSACVIDPLTIEDGVNC 650

Query: 602 KAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLEN 661
            + +  +L     D+  +     +E  + +     S  + V V W +K +E+Y+TH L +
Sbjct: 651 NSPSDADLQFYTTDDKGIIRGSEIEVGEFVVGSEKSKRLYVLVSWPEKQIERYDTHLLTS 710

Query: 662 LLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRL 721
           L EVFK+    K+ + E +SLY CLEAFL+EEPL PEDMWYCP CK+  QASKKLDLWRL
Sbjct: 711 LPEVFKSSFFAKRPQ-ESVSLYKCLEAFLQEEPLGPEDMWYCPSCKKHCQASKKLDLWRL 769

Query: 722 PEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGG 781
           PE+LVIHLKRFSYSR MK+KLE +V+FP+ D +L+ YVA KN      Y LYA++NHYG 
Sbjct: 770 PEILVIHLKRFSYSRFMKNKLEAYVDFPVDDLDLSMYVAYKNGQSCTRYVLYAVSNHYGS 829

Query: 782 MGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           MG GHYTA +     ++WYNFDDS++ PI  D +KS AAYVLFYRR
Sbjct: 830 MGGGHYTAFVH-QGGDQWYNFDDSNVYPIGLDKIKSCAAYVLFYRR 874


>gi|6910582|gb|AAF31287.1|AC006424_16 CDS [Arabidopsis thaliana]
          Length = 887

 Score =  640 bits (1651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/880 (42%), Positives = 520/880 (59%), Gaps = 108/880 (12%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W+  W  +V             L E F S   S   RP  IDN D+++   +E   + P+
Sbjct: 50  WYTRWQRFVGL-----------LTEEFRSGEPSEVTRPGPIDNHDIID---SESDASDPQ 95

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVM 120
           +   L EG DY L+ QEVW +L  WY GGP + RK+IS G      +VEVY L L L   
Sbjct: 96  LRMMLEEGVDYTLVQQEVWRKLVKWYKGGPPVPRKLISQGFYTKSFSVEVYLLCLTLTDS 155

Query: 121 PRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMN-DMDRTLDDAN 179
                + IR+SK+ +IG+L+   C+      +   IWDY+  +K  L++   ++++++A 
Sbjct: 156 RDESTTIIRLSKQASIGQLYEMVCAG-----KGARIWDYFEKKKSVLLDPSSEQSVEEAG 210

Query: 180 IQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLS--IAGGWSASKGT 237
           +Q +QDIL+EV    +G+     +     AE + + V +EP +S     + GG + S G 
Sbjct: 211 LQFNQDILLEV----DGSASSQFVM--SLAENELAMVPLEPMRSDAMDIVRGGGTLSNG- 263

Query: 238 SRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHT 297
              HS+    S      R++     SS    +G   GL GL NLGNTCFMNS +QCL HT
Sbjct: 264 ---HSNGFKFS---FFGRNTFKDDVSSRTFGKGEKRGLGGLQNLGNTCFMNSTLQCLAHT 317

Query: 298 PEFARYFREDYRREINWQNPLGM------------------------------------- 320
           P    YF +DYR +IN +NPLGM                                     
Sbjct: 318 PPIVEYFLQDYRSDINAKNPLGMRGELAIAFGELLRKLWSSGQNTVAPRAFKTKLARFAP 377

Query: 321 ----------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARND 370
                      E+LAFLLDGLHEDLN+VK KPYI++KD+DGRPD+EVA+E W  H ARND
Sbjct: 378 QFSGYNQHDSQEMLAFLLDGLHEDLNKVKRKPYIEAKDSDGRPDDEVAEEKWKYHKARND 437

Query: 371 SIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPST 430
           S+IVDV QGQYKSTLVCP C K+S+TFDPFMYLSLPL ++ TR+MTVTVF  DGS LP  
Sbjct: 438 SVIVDVFQGQYKSTLVCPDCGKISITFDPFMYLSLPLPSSRTRSMTVTVFYGDGSHLPMP 497

Query: 431 YTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHL 490
           YTVTVPK G CRDL   LG  C L   E L +AE+ +H + ++ ++P   L+ IKD++H+
Sbjct: 498 YTVTVPKDGSCRDLSNALGTACCLDNDESLLLAEVYDHKVFKYYENPRELLNGIKDNEHI 557

Query: 491 AAYRVPKLVK--KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQ 548
            AYR  ++ K    V L+++H  QE+           K +GTPLV+ I+++  +S   I 
Sbjct: 558 VAYRFKQMHKGPGKVKLEILHGEQEKSSDRGP-----KCFGTPLVTYINKEP-LSGTDIA 611

Query: 549 STVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPN 608
           +++  +LSP  +    +H      S +V + + +G     SS +I   D  +        
Sbjct: 612 TSISGLLSPLRR----VHM-----SCVVNSGNENGHVPDESSRSILSRDTETEDNDR--E 660

Query: 609 LPLQLVDESNVCFDLS-VEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFK 667
           L L L+ +    F+L  +E D  +  P S T ++  V W++K  EKY++ +L +L +V K
Sbjct: 661 LSLSLLRDY-YSFNLQPLESDSVVN-PGSVTKVL--VKWNEKEHEKYDSSYLNDLPKVHK 716

Query: 668 NGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVI 727
           N  + KK   E +SL++CLEAFL EEPL P+DMWYCP CKE RQA+KKLDLW+LP++LV 
Sbjct: 717 N-VLAKKTMQEGISLFSCLEAFLAEEPLGPDDMWYCPGCKEHRQANKKLDLWKLPDILVF 775

Query: 728 HLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHY 787
           HLKRF+YSR  K+K++T VNF IHD +L+KYV N++  +  LYELYA++NHYGG+G GHY
Sbjct: 776 HLKRFTYSRYFKNKIDTLVNFHIHDLDLSKYVKNED-GQSYLYELYAISNHYGGLGGGHY 834

Query: 788 TAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           TA+ KL+DE +WYNFDDS +S +NE ++K++AAYVLFY+R
Sbjct: 835 TAYAKLMDETKWYNFDDSRVSAVNESEIKTSAAYVLFYQR 874


>gi|359479088|ref|XP_003632213.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like [Vitis
           vinifera]
          Length = 882

 Score =  638 bits (1646), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 371/891 (41%), Positives = 516/891 (57%), Gaps = 104/891 (11%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSAS-----KRPSGIDNSDLV-NDATAED 54
           WW+       + Q +N  DG++      SA   +S     K  + I NSDLV N    ED
Sbjct: 28  WWK-------EAQDSNLADGNAKRGVLYSARPGSSYVGPMKIINNIFNSDLVFNLRREED 80

Query: 55  PGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLR 114
            G   E  +  + GRDY L+P ++W Q   W+       +   +  + + ++A +VYPL 
Sbjct: 81  SGHSNENGEVGVSGRDYALVPGDLWLQALKWHTDSRVATKDGRTFSVMEDDMA-DVYPLL 139

Query: 115 LQLLVMPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRT 174
           L+L ++       ++I+KK+   E  RRAC IF +  E + IWD+ G      +ND ++ 
Sbjct: 140 LRLSILRETNSLGVKITKKDNAVEFFRRACKIFSVESELLHIWDFSGQTTLFFINDKNKL 199

Query: 175 LDDANIQMDQDILVE--VLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWS 232
             D   Q DQ+IL+E  V    +   C+   +D   A+   S++      +SL + G  +
Sbjct: 200 PKDCQRQSDQEILLELQVYGLSDSLRCREGKKDEMAAQH--SNLAGSSCGASLMMNGSLA 257

Query: 233 ASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQ 292
                S + +S +                GSSG      S+GLTGL NLGNTCFMNS++Q
Sbjct: 258 CMNSNSVHTNSPV--------------FYGSSG---EAGSLGLTGLQNLGNTCFMNSSLQ 300

Query: 293 CLVHTPEFARYFREDYRREINWQNPLGM-------------------------------- 320
           CL HTP+   YF  DY REIN +N LGM                                
Sbjct: 301 CLAHTPKLVDYFLGDYSREINHENALGMDGEIALAFGDLIRKLWAPGATPVAPRMFKSKL 360

Query: 321 ---------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANH 365
                           ELLAFLLDGLHEDLNRVK KPYI++KD +G PDEEVADEYW NH
Sbjct: 361 ARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYIEAKDGEGWPDEEVADEYWRNH 420

Query: 366 IARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGS 425
           +ARNDSIIVDV QGQY+STLVCPVC KVS+TFDPFMYLSLPL +TT RTMT+TV ++DG 
Sbjct: 421 LARNDSIIVDVSQGQYRSTLVCPVCKKVSITFDPFMYLSLPLPSTTMRTMTLTVVSADGI 480

Query: 426 ALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIK 485
             PS  T+TVPK+G+C DLIQ L + C LK  E L VAEI N+ I R+L+DP  SLS I+
Sbjct: 481 TQPSPCTITVPKNGKCEDLIQALSSSCYLKDDETLLVAEIYNNRIIRYLEDPTDSLSLIR 540

Query: 486 DDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSG 545
           D D L AYR+PK+  +   +  +H+  +++    + +S WKA+G PLV+ I   + ++  
Sbjct: 541 DGDRLVAYRLPKVTNEDRLVVFMHQRIDEQYIHGKLSSSWKAFGIPLVARIC--NSVNGS 598

Query: 546 KIQSTVQRMLSPF-LKKESLM-HADSFDPS------SMVTTVDPSGEAHSNSSSNIAKED 597
            + +   ++++PF +  E +  ++DS + +       +   + P   A  N  + I  + 
Sbjct: 599 DVYNLYLKLINPFQITSEGISNNSDSSEKTVIEEVKELKDAISPVLSAGVNGINEIWVDP 658

Query: 598 ASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTI-RIPSSSTSIVVYVDWSQKLLEKYNT 656
            S ++      L   L D+        +  D+ + R+P     +V    W +K +E+Y+T
Sbjct: 659 DSDAE------LQFYLTDDKGATRASKLVMDEPVTRLPRRLNLLVF---WPEKKIEQYDT 709

Query: 657 HFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKL 716
           H + +L E+FK+G + ++ + E +SLY CLEAFL+EEPL P+DMWYCP CK  RQASKKL
Sbjct: 710 HLISSLPEIFKSGFIARRPQ-ESVSLYRCLEAFLKEEPLGPDDMWYCPGCKTHRQASKKL 768

Query: 717 DLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALT 776
           DLWRLPE+LVIHLKRFSYSR MK+KLET+V+FP+ + +L+ Y+ +KN      Y LYA++
Sbjct: 769 DLWRLPEILVIHLKRFSYSRFMKNKLETYVDFPVDNLDLSTYITHKNGMVSNRYMLYAVS 828

Query: 777 NHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           NHYG MG GHYTA +     ++WY+FDDSH+SPI ED +K++AAYVLFYRR
Sbjct: 829 NHYGSMGGGHYTAFVH-HGGDQWYDFDDSHVSPIPEDKIKTSAAYVLFYRR 878


>gi|22655793|gb|AAN04210.1| Putative ubiquitin carboxyl terminal hydrolase [Oryza sativa
           Japonica Group]
          Length = 890

 Score =  627 bits (1616), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 371/878 (42%), Positives = 516/878 (58%), Gaps = 113/878 (12%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           WW +W  YV   +P+   D   L          A  RP  IDNS LV++ ++   G  PE
Sbjct: 51  WWLNWQSYVGLIKPDE-NDADML--------PQAPSRPGEIDNSKLVSEESSS-IGDEPE 100

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVM 120
           +  TL EG DY L+PQEVW +LH WY GGP L+R+VI S  +     V+VYPLRL+L   
Sbjct: 101 LQRTLREGDDYALVPQEVWRKLHEWYKGGPELSRRVICSSPTSRSYIVDVYPLRLKLFDG 160

Query: 121 PRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANI 180
                  IRIS+K  + EL+   CS+  +   +I IWD+Y   K   + +++ T+++A +
Sbjct: 161 RDSLERIIRISRKAKVSELYSLVCSLLSVEQSKIDIWDFYQKTKGKKLINLNETVEEAQL 220

Query: 181 QMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRN 240
            MDQ+I++E   +    +   +  +N  A      + +EPS SS SIAGG + S G S  
Sbjct: 221 MMDQEIIIEAKADDAWCSDLGTRSNNELA-----LIPLEPSTSSFSIAGGPAFSNGFSSG 275

Query: 241 HS----SEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVH 296
                  + S SP L  A D  +   S+G  T+    GL+GL NLGNTCFMNSAIQ LVH
Sbjct: 276 FGSSFSQDNSFSPLLRDAEDGYSF--SNG--TKDDIHGLSGLHNLGNTCFMNSAIQSLVH 331

Query: 297 TPEFARYFREDYRREINWQNPLGMVELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEE 356
           TP    YF +DY REIN +NPLG+ ELLAFLLDGLHEDLNRVK KPYI++KDADGRPDEE
Sbjct: 332 TPPLVEYFLQDYSREINTENPLGLQELLAFLLDGLHEDLNRVKKKPYIEAKDADGRPDEE 391

Query: 357 VADEYWANHIARNDSIIVD-----VC-------------------------------QGQ 380
           +A+E W  H ARNDSIIVD     VC                               QGQ
Sbjct: 392 LAEECWNYHKARNDSIIVDKFQVYVCSQLFTTHQYTFSIACCFCNDYLLETRPERLGQGQ 451

Query: 381 YKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGR 440
           YKSTLVCP C K+SVTFDPFMYLSLPL +T TR + VTVF+  G ALP  YTV V     
Sbjct: 452 YKSTLVCPDCKKISVTFDPFMYLSLPLPSTVTRMINVTVFSGTGDALPMPYTVKV----- 506

Query: 441 CRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVK 500
                                     +H I R+  +P   L  +KD+D L AYR+P   +
Sbjct: 507 -------------------------YDHRIYRYW-NPSEPLCHVKDEDKLVAYRLPVGSE 540

Query: 501 KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLK 560
             + ++++HR+ ++    +      K  G+PLV+ I  D       I +TV  +L+PF++
Sbjct: 541 NLLRVEILHRVVDRYTSESMFNLSRKLIGSPLVTCIPSDST-RKADIYATVSSLLAPFVR 599

Query: 561 KESLMHADSFDPSSMVTTVDPSGEAHSNSSSNI-AKEDASSSKAVTLPNLPLQLVDESNV 619
            +     +S   ++ + +  PS +    + + +  +ED S+S      N+  +  DE  +
Sbjct: 600 AKVHTLDES---ATKLNSNGPSLDGIVLTDNGVTCEEDVSTS------NVDEEAADEEVL 650

Query: 620 CFDLSVEGDKTIR----------IPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNG 669
            F L +  DK  +          +P S+  ++  +DWS +  E Y+  +++ L  VFK G
Sbjct: 651 PFQLWLTDDKANKREHIDADSNGVPGSTMRLL--MDWSDREHEVYDIKYMDELSVVFKPG 708

Query: 670 PVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHL 729
            ++KK R E ++L++CL+AFL++EPL P+DMWYCP+C E +QASKKLDLWRLPE+LV+HL
Sbjct: 709 FMSKKNRQEAVNLFSCLDAFLKDEPLGPDDMWYCPRCTEHKQASKKLDLWRLPEILVVHL 768

Query: 730 KRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTA 789
           KRFSYSR MK+KL+TFVNFPIHD ++++Y  +    +  +YELYA+ NHYGGMG GHY+A
Sbjct: 769 KRFSYSRFMKNKLDTFVNFPIHDLDMSRYANHSRGDQPPIYELYAVINHYGGMGGGHYSA 828

Query: 790 HIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           + KL++E+ WY+FDDSH+S + E+D+++++AY+LFYRR
Sbjct: 829 YAKLVEEDSWYHFDDSHVSSVGEEDIRTSSAYLLFYRR 866


>gi|449501245|ref|XP_004161317.1| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal
           hydrolase 5-like, partial [Cucumis sativus]
          Length = 468

 Score =  619 bits (1596), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 316/455 (69%), Positives = 371/455 (81%), Gaps = 13/455 (2%)

Query: 379 GQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKH 438
           GQYKSTLVCPVCNKVSVTFDPFMYLSLPLQ+TTTRTMTVTVFTSDGS  PST TVTVPK 
Sbjct: 1   GQYKSTLVCPVCNKVSVTFDPFMYLSLPLQSTTTRTMTVTVFTSDGSKRPSTLTVTVPKQ 60

Query: 439 GRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKL 498
           GRCRDLIQ L   CSL+ SE+L +AE+++H + RFL+DPLISLSTIKDDDH+AAY++PKL
Sbjct: 61  GRCRDLIQALNGTCSLRHSEKLLLAEVRDHLVHRFLEDPLISLSTIKDDDHIAAYKIPKL 120

Query: 499 VKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPF 558
            K A +LQL+HR QEQ    A   S W+ +GTPLVS +S +  +    +Q  V+R LSP 
Sbjct: 121 TKNAKYLQLVHRSQEQVTSDADIMSGWRPFGTPLVSVVSCEGPVKKDYLQRIVKRALSPL 180

Query: 559 LKKESLMHADSFDPSSMVTTVDPSGE--AHSNSSSNIA----KEDASSSKAVTLPNLPLQ 612
            K  +LM  D  D     +++  +GE   H +SS+         D   SKA+    LPLQ
Sbjct: 181 AKIGTLMDTDVSD-----SSMSHAGEDLHHHDSSAETCTSSLNSDDPKSKAMEPFKLPLQ 235

Query: 613 LVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVT 672
           L++E NVC +LS  G++ +++P SS S++VY+DWSQKLL+K++T +LENL EVFK+GPV 
Sbjct: 236 LLNEENVCIELS-SGEEAVKLPPSS-SVLVYIDWSQKLLKKFDTGYLENLPEVFKSGPVM 293

Query: 673 KKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF 732
           KKARTEPLSLY+CLE+FLREEPLVPEDMW+CPQCKERRQASKKLDLWRLPEVLVIHLKRF
Sbjct: 294 KKARTEPLSLYSCLESFLREEPLVPEDMWFCPQCKERRQASKKLDLWRLPEVLVIHLKRF 353

Query: 733 SYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIK 792
           SYSRSMKHKLETFVNFPIHDF+LT YVANKN+S+RQLYELYALTNHYG MGSGHYTAHIK
Sbjct: 354 SYSRSMKHKLETFVNFPIHDFDLTNYVANKNNSQRQLYELYALTNHYGSMGSGHYTAHIK 413

Query: 793 LLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           L+DENRWY+FDDSHIS INE++VKSAAAYVLFYRR
Sbjct: 414 LIDENRWYSFDDSHISLINEEEVKSAAAYVLFYRR 448


>gi|356543638|ref|XP_003540267.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like [Glycine
           max]
          Length = 874

 Score =  610 bits (1572), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 370/885 (41%), Positives = 493/885 (55%), Gaps = 104/885 (11%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSAS---KRPSGIDNSDLVNDAT-AEDPG 56
           WW+   D +    P    D    +   +  GSS +   K  + I NSDLV      ED  
Sbjct: 30  WWKDAQDSM----PEADSDKKKGIAFASFPGSSYAGPMKIINNIFNSDLVFSLRREEDSP 85

Query: 57  AGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQ 116
              E  +  + GRD+ L+  ++W Q   W+     + +       + +++A +VYPL+L+
Sbjct: 86  RIRENGEVGVSGRDFALVSGDMWLQALKWHSDSKNVMKDDKGFSATDSDMA-DVYPLQLR 144

Query: 117 LLVMPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLD 176
           L V        +RISKK+   EL +RAC +F ++ E +CIWDY   +   LMND ++   
Sbjct: 145 LSVQRETNSFGVRISKKDNAVELFKRACKMFSVDSEMLCIWDY-SDQITFLMNDNNQVPV 203

Query: 177 DANIQMDQDILVE--VLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS 234
           D   Q DQ+IL+E  V    +   C+         E K   +      +SL + G +  +
Sbjct: 204 DCQRQSDQEILLELQVYGLSDSIRCR---------EGKKDEMANFSGSASLKMNGTYDGA 254

Query: 235 KGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCL 294
                N                  N+L  S       S+GLTGL NLGNTCFMNS++QCL
Sbjct: 255 NSDCMNA-----------------NSLTFSSGPGEAGSLGLTGLQNLGNTCFMNSSLQCL 297

Query: 295 VHTPEFARYFREDYRREINWQNPLGM---------------------------------- 320
            HTP+   YF EDY REIN  NPLGM                                  
Sbjct: 298 AHTPKLVDYFLEDYIREINHDNPLGMNGEIALAFGDLLRKLWAPGASPVSPRIFKSKLAR 357

Query: 321 -------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELLAFLLDGLHEDLNRVK KPYI+ KD DGR DEEVADEYW NH+A
Sbjct: 358 FAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYIEVKDGDGRRDEEVADEYWHNHLA 417

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDS+IVDVCQGQYKSTLVCPVC KVSVTFDPFMYLSLPL +TT RTMT+TV + +G  +
Sbjct: 418 RNDSVIVDVCQGQYKSTLVCPVCRKVSVTFDPFMYLSLPLPSTTVRTMTITVVSGNGGEM 477

Query: 428 P--STYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIK 485
              S YT+TVPK+GR  DL + LG  CSL   E L VAE+ N+ I RFL+DP  SLS I+
Sbjct: 478 SQLSPYTITVPKNGRFEDLTRALGIACSLGADETLLVAEVYNNCIIRFLEDPTDSLSLIR 537

Query: 486 DDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSG 545
           D D L AYR  K    A  +  I++  E++    + T  WKA+G P+V  +    V +  
Sbjct: 538 DADKLVAYRFLKCNVDAPLVVFINQRMEEQYVYGKQTLNWKAFGIPVVDRLY--SVTNGS 595

Query: 546 KIQSTVQRMLSPFLK--KESLMHADSFDPSSMVTTVDPSGEAHSNS-SSNIAKEDASSSK 602
            +++   +   PF    +E+L +       S  T  D   E  + S  SN+ + D  S  
Sbjct: 596 DLRNLYLKWFYPFQNPIEEALENC----LVSKETEEDAETEVTTPSLGSNVNELDTPSDG 651

Query: 603 AVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENL 662
                 +   + DE     +  +  ++ + I      + V V WS++ L+ Y+T    +L
Sbjct: 652 G-----MEFYVTDEKGTIKNSKILMNEPLAINGDLRLLHVLVCWSEEQLKIYDTQLCSSL 706

Query: 663 LEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLP 722
            EVFK+G + K+ + E +SLY CLEAFL+EEPL PEDMWYCP CKE RQASKKLDLWRLP
Sbjct: 707 PEVFKSGFLAKRPQ-ESVSLYKCLEAFLQEEPLGPEDMWYCPGCKEHRQASKKLDLWRLP 765

Query: 723 EVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGM 782
           E+LVIHLKRF YSR +K+KLET+V+FP+ + +L+ Y+   N      Y LYA++NHYG M
Sbjct: 766 EILVIHLKRFQYSRYLKNKLETYVDFPVDNLDLSAYITYGNDESYH-YTLYAVSNHYGSM 824

Query: 783 GSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           G GHYTA +     ++WY+FDDSH++PI+++ +KS+AAYVLFYRR
Sbjct: 825 GGGHYTAFVH-RGGDQWYDFDDSHVNPISKEKIKSSAAYVLFYRR 868


>gi|356550050|ref|XP_003543403.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like [Glycine
           max]
          Length = 872

 Score =  605 bits (1561), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 366/881 (41%), Positives = 490/881 (55%), Gaps = 98/881 (11%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAG-P 59
           WW+   D +  D     G   +     + AG    K  + I NSDLV     ED      
Sbjct: 30  WWKDAQDSMPADSDKKKGIAFASFPGSSYAG--PMKIINNIFNSDLVFSLRREDDLQHIR 87

Query: 60  EIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLV 119
           E  +  + GRD+ L+  ++W Q   W+     + +       + +++A +VYPL+L+L V
Sbjct: 88  ENGEVGVSGRDFALVSGDMWLQALKWHSDSKNVMKDDKGFSATDSDMA-DVYPLQLRLSV 146

Query: 120 MPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDAN 179
                   +RISKK+   EL +RAC +F ++ E +C+WDY   +   LMND ++   D  
Sbjct: 147 QRETNSFGVRISKKDNAVELFKRACKMFSVDSETLCMWDY-SDQITFLMNDKNQVPVDCQ 205

Query: 180 IQMDQDILVE--VLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGT 237
            Q DQ+IL+E  V    +   C+   +D                         +S S   
Sbjct: 206 RQSDQEILLELQVYGLSDSIRCREGKKDE---------------------MANFSGSASL 244

Query: 238 SRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHT 297
             N + + + S  + S     N+L  S       S+GLTGL NLGNTCFMNS++QCL HT
Sbjct: 245 KMNDTYDGANSDCMNS-----NSLTFSSGPGEAGSLGLTGLQNLGNTCFMNSSLQCLAHT 299

Query: 298 PEFARYFREDYRREINWQNPLGM------------------------------------- 320
           P+   YF EDY REIN  NPLGM                                     
Sbjct: 300 PKLVDYFLEDYIREINHDNPLGMNGEIALAFGDLLRKLWAPGASPVAPRTFKSKLARFAP 359

Query: 321 ----------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARND 370
                      ELLAFLLDGLHEDLNRVK KPYI+ KD D RPDEEVADEYW NH+ARND
Sbjct: 360 QFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYIEVKDGDDRPDEEVADEYWHNHLARND 419

Query: 371 SIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALP-- 428
           S+IVDVCQGQYKSTLVCPVC KVSVTFDPFMYLSLPL +TT RTMT+TV + +G  +P  
Sbjct: 420 SVIVDVCQGQYKSTLVCPVCRKVSVTFDPFMYLSLPLPSTTMRTMTITV-SGNGGEMPQL 478

Query: 429 STYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDD 488
           S YT+TVPK+GR  DL + L   C+L   E L VAE+ N+ I RFL+DP  SLS I+D D
Sbjct: 479 SPYTITVPKNGRFEDLTRALSIACALGADETLLVAEVYNNCIIRFLEDPTDSLSLIRDAD 538

Query: 489 HLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQ 548
            L AYR  K    A  +  I++  E++    + T  WKA+G P+V  +    V +   ++
Sbjct: 539 KLVAYRFLKYNADAPLVVFINQRMEEQYVYGKLTLNWKAFGIPVVDMLY--SVTNGSDLR 596

Query: 549 STVQRMLSPFLK--KESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTL 606
           +   +   PF    +E+L +   F  +   T    +     +  SN+   D  S      
Sbjct: 597 NLYLKWFYPFQNPIEEALENCLVFKETEEDTE---TEATTPSLGSNVNGLDTPSDGG--- 650

Query: 607 PNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF 666
             +   + DE     +  +  ++ + I      + V V WS++ L+KYNT    +L EVF
Sbjct: 651 --MEFYVTDEKGTIKNSKILMNEPLVINGELRLLHVLVCWSEEQLKKYNTQLCSSLPEVF 708

Query: 667 KNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLV 726
           K+G + K+ + E +SLY CLEAFL+EEPL PEDMWYCP CKE RQASKKLDLWRLPE+LV
Sbjct: 709 KSGFLAKRPQ-ESVSLYKCLEAFLQEEPLGPEDMWYCPGCKEHRQASKKLDLWRLPEILV 767

Query: 727 IHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGH 786
           IHLKRF YSR +K+KLET+V+FP+ + +L+ Y+ + N      Y LYA++NHYG MG GH
Sbjct: 768 IHLKRFQYSRYLKNKLETYVDFPVDNLDLSAYITHGNGESYN-YTLYAVSNHYGSMGGGH 826

Query: 787 YTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           YTA +     ++WY+FDDSH+ PI ++ +KS+AAYVLFYRR
Sbjct: 827 YTAFVH-RGGDQWYDFDDSHVYPIIKEKIKSSAAYVLFYRR 866


>gi|414877602|tpg|DAA54733.1| TPA: hypothetical protein ZEAMMB73_341521 [Zea mays]
          Length = 888

 Score =  595 bits (1535), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 341/816 (41%), Positives = 474/816 (58%), Gaps = 99/816 (12%)

Query: 66  LEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVMPRGEC 125
              R Y LLP +++++   WY      A K +S      E +V +YP+ L++        
Sbjct: 100 FAARSYALLPADLFSKAREWYIVPAKSAVKNVSPA---GEGSVNIYPIMLRVSASRDTYT 156

Query: 126 STIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQD 185
            T++I KK+   E  +RAC I   + E + IWD+ G   + +M +++R+  D+    DQ+
Sbjct: 157 LTVKIGKKDNSTENFKRACKILTADSEPVHIWDFSGRTTYIVMTELNRSPHDSK-SADQE 215

Query: 186 ILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEI 245
           + +++            I D           L EP      +  G    +          
Sbjct: 216 MPLQI-----------HIYD-----------LSEP------MVNGSDGKRDELALTLGGS 247

Query: 246 STSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFR 305
           S+S   +   D D++ GSS    +    GLTGL NLGNTCFMNSA+QCL HT +   YF 
Sbjct: 248 SSSNGGSMNMDLDSSSGSS----KQVGSGLTGLDNLGNTCFMNSAVQCLAHTSKLVDYFL 303

Query: 306 EDYRREINWQNPLGMV-------------------------------------------- 321
            D+ +E+N  NPLGM                                             
Sbjct: 304 GDFHKEVNPHNPLGMKGELAYAFGDLLRKLWAIDRTPVAPRQFKARLGRFAPQFSGFNQH 363

Query: 322 ---ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQ 378
              ELLAFLLDGLHEDLNRVK KPY ++KD+DGRPDEEVADEYW NH+ARNDSIIVD+CQ
Sbjct: 364 DSQELLAFLLDGLHEDLNRVKCKPYSEAKDSDGRPDEEVADEYWGNHLARNDSIIVDICQ 423

Query: 379 GQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKH 438
           GQYKSTLVCP+C KVSVTFDPFMYLSLPL +TT RTMT+TVF++DG++ PS YT++VPK 
Sbjct: 424 GQYKSTLVCPICKKVSVTFDPFMYLSLPLPSTTMRTMTITVFSTDGTSGPSPYTISVPKS 483

Query: 439 GRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKL 498
           G  R LI  L + CSL+  E L VAE+ N+S+ R+LD+P   +S I+D D L AYR+PK 
Sbjct: 484 GDTRTLINALSSACSLRDDERLLVAEVYNNSLIRYLDEPSEVISLIRDGDRLVAYRLPKD 543

Query: 499 VKKAVFLQLIHRLQEQEPGAAQTTSQ-WKAYGTPLVSSISRDDVISSGKIQSTVQRMLSP 557
            + A    ++ R Q  E   +    + WK +GTPLVSS+   D ++   I +   ++++P
Sbjct: 544 NEDAPI--VVFRNQRMESSLSSFGRKSWKTFGTPLVSSLP--DTVTGSNIYNLFLKVMTP 599

Query: 558 FL--KKESLMHADSFDPSSMV---TTVDPSGEAHSNSS-SNIAKEDASSSKAVTLPNLPL 611
           F   + ++ +   +   SS+V     ++ S +A  ++S +N + ED + ++ V    +  
Sbjct: 600 FRVSRGDAAVADQTLGESSLVDETEDINMSSDASEHTSINNNSVEDETGTEDV----MQF 655

Query: 612 QLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPV 671
            L +E      + +E D +I +      + V V W    L++YN   L +L EV+K    
Sbjct: 656 FLTNERIPDQRMKIEMDLSITVNDPHKRLHVAVCWEDSGLDQYNFSSLNSLPEVYKAVLF 715

Query: 672 TKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKR 731
           +++ + +  SLY CLEAF++EEPL PEDMWYCP CKE RQASKKLDLWRLPE+L+IHLKR
Sbjct: 716 SRRPQ-DTCSLYACLEAFIKEEPLGPEDMWYCPGCKEHRQASKKLDLWRLPEILIIHLKR 774

Query: 732 FSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHI 791
           FSYSR  K+KLETFV+FPIHD +L+KY+ ++       Y LYA +NHYG +G GHYTA++
Sbjct: 775 FSYSRYTKNKLETFVDFPIHDLDLSKYIGHRCQDVPHNYRLYATSNHYGSLGGGHYTAYV 834

Query: 792 KLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
               +  WY+FDD H+ PI ED +K++AAYVLFYRR
Sbjct: 835 YHEGKKGWYDFDDRHVGPITEDSIKTSAAYVLFYRR 870


>gi|357453291|ref|XP_003596922.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula]
 gi|355485970|gb|AES67173.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula]
          Length = 871

 Score =  593 bits (1530), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 358/884 (40%), Positives = 488/884 (55%), Gaps = 112/884 (12%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSAS--KRPSGIDNSDLVNDATAEDPGAG 58
           WW+   D +  D     G     + + +S GSS    K  + I +SDLV +   E+    
Sbjct: 33  WWKDAQDAMPVDLDKKKG-----IVYASSPGSSYGPMKIINNIFSSDLVFNLQREEESRN 87

Query: 59  P-EIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAV-EVYPLRLQ 116
             E  +  + GRD+ L+  ++W Q   W+       +     G S T+  + +VYPL+L+
Sbjct: 88  ILENGEVGVSGRDFALVSGDMWLQALKWHSDSKNATKD--DKGFSATDTDMGDVYPLQLR 145

Query: 117 LLVMPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLD 176
           L V        +RISKK+   EL++RAC +F ++ E + I DY GH      +  +    
Sbjct: 146 LSVQRETNSFEVRISKKDNTVELYKRACKLFSVDSEMLRILDYSGHITLLFSDGENHVPT 205

Query: 177 DANIQMDQDILVE--VLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS 234
           D   Q DQ+ L+E  V    +   C+   +D+G A  K +        SSL+   G    
Sbjct: 206 DFQRQSDQENLLELQVYGLSDSMRCREGKKDSGSASMKMNGTADCTRASSLTFCLG---- 261

Query: 235 KGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCL 294
                                      G +G      S+GLTGL NLGNTCFMNS++QCL
Sbjct: 262 --------------------------PGEAG------SLGLTGLQNLGNTCFMNSSLQCL 289

Query: 295 VHTPEFARYFREDYRREINWQNPLGM---------------------------------- 320
            HTP+   YF EDY REIN  NPLGM                                  
Sbjct: 290 THTPKLVDYFLEDYSREINSDNPLGMNGEIASAFGDLLRKLWAPGASPVAPRMFKSKLAR 349

Query: 321 -------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELLAFLLDGLHEDLNRVK KPY+++KD DGRPDEEVADEYW  H+A
Sbjct: 350 FAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYVEAKDGDGRPDEEVADEYWNYHLA 409

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVF--TSDGS 425
           RNDS+IVDVCQGQYKSTLVCPVC KVSVTFDPFMYLSLPL +TT RTMT+TV   T DG 
Sbjct: 410 RNDSVIVDVCQGQYKSTLVCPVCRKVSVTFDPFMYLSLPLPSTTMRTMTLTVVSNTCDGM 469

Query: 426 ALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIK 485
           +  S YT++VPKHG+  DL + L   CSL   E L VAE+ N+ I RFL+DP  SLS I+
Sbjct: 470 SQLSPYTISVPKHGKFEDLTRALSTACSLGPDEALLVAEVYNNRIIRFLEDPADSLSLIR 529

Query: 486 DDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSG 545
           D D L AYR PK       +  I++  E++    +    WKA+G P+V+S+   ++++  
Sbjct: 530 DADKLVAYRFPKDNVDTPLVVFINQRMEEQYIYGKLAPNWKAFGIPVVASLC--NIVNGS 587

Query: 546 KIQSTVQRMLSPF--LKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKA 603
            +++   +   P   L +E+L      + +  V  ++  G A S S + +   D  S   
Sbjct: 588 DLRNLYLKWFHPLQDLIEETLESCVVSERTEEVAEIE--GVADSGSDTIVNGLDTPSDG- 644

Query: 604 VTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLL 663
                +   + D+     +  +  ++ + +      + V V WS+K ++KY+T    +L 
Sbjct: 645 ----EMEFYITDDKGTVKNSKILMNEPLTVNGGLNPLHVLVCWSEKQIKKYDTQLSSSLP 700

Query: 664 EVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPE 723
           EV K+  + K+ + EP+SLY CLE FL+EEPL PEDMWYCP CK  RQASKKLDLWRLPE
Sbjct: 701 EVCKSSFLAKRPQ-EPVSLYKCLETFLQEEPLGPEDMWYCPGCKNHRQASKKLDLWRLPE 759

Query: 724 VLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMG 783
           +LVIHLKRF YSR MK+KLET V+FP+ + +L+ Y+ + N      Y LYA++NH+G MG
Sbjct: 760 ILVIHLKRFQYSRFMKNKLETLVDFPVDNLDLSSYITHGNQKSYH-YTLYAISNHFGSMG 818

Query: 784 SGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            GHYTA +     ++WY+FDDS + PI+++ +KS+AAYVLFYRR
Sbjct: 819 GGHYTAFVH-HGGDQWYDFDDSRVYPISKEKIKSSAAYVLFYRR 861


>gi|257050978|sp|Q9C585.2|UBP8_ARATH RecName: Full=Ubiquitin carboxyl-terminal hydrolase 8; AltName:
           Full=Deubiquitinating enzyme 8; Short=AtUBP8; AltName:
           Full=Ubiquitin thioesterase 8; AltName:
           Full=Ubiquitin-specific-processing protease 8
          Length = 871

 Score =  593 bits (1528), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 348/878 (39%), Positives = 493/878 (56%), Gaps = 93/878 (10%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSAS---KRPSGIDNSDLVNDATAE-DPG 56
           WW+   D +    P+ + +   +L +  S GSS     K  + I NSD++ D   E D  
Sbjct: 33  WWKDAQDSM----PSESVEKREIL-YTASCGSSYGGPMKLINNIFNSDILFDLRREGDAL 87

Query: 57  AGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQ 116
              E  +  + GRD+ L+  ++W Q   WY       + V S      +   +VYP++L+
Sbjct: 88  QNGETGEASVSGRDFALVSSDMWLQALKWYHDDKNTEKGVKSFSAGGVDRG-DVYPVQLR 146

Query: 117 LLVMPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLD 176
           L V+       ++I KK+   E  RRAC IF L+ EQ+ IWD  G       +D+  +  
Sbjct: 147 LSVLQETNSLAVKICKKDNSVECFRRACKIFSLDSEQLRIWDISGQTTLFFESDVSNS-K 205

Query: 177 DANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKG 236
           D   Q DQ+IL+E+   + G +    ++++    KK      + +  +  + GG     G
Sbjct: 206 DCQQQADQEILLEL--QIYGLSDSIKLKES----KKEDGSTQQTNGITNGMNGGTVFRFG 259

Query: 237 TSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVH 296
            S                    N+L   G      ++GLTGL NLGNTCFMNS++QCL H
Sbjct: 260 RS--------------------NSLSFLGKAGEAGTLGLTGLQNLGNTCFMNSSLQCLAH 299

Query: 297 TPEFARYFREDYRREINWQNPLGMV----------------------------------- 321
           TP+   +F  +Y +EIN  NPLGM                                    
Sbjct: 300 TPKLVDFFLGEYSKEINLDNPLGMKGEIALAFGDLLRSLWAPGASTVAPRTFKAKLARFA 359

Query: 322 ------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARN 369
                       ELLAFLLDGLHEDLNRVK+KPY+++KD DGRPD EVADEYW NH+ARN
Sbjct: 360 PQFSGFNQHDSQELLAFLLDGLHEDLNRVKNKPYVEAKDGDGRPDAEVADEYWRNHVARN 419

Query: 370 DSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPS 429
           DSIIVDVCQGQYKSTLVCP+C KVSV FDPFMYLSLPL  T+ RTM +TV ++DGS+LP 
Sbjct: 420 DSIIVDVCQGQYKSTLVCPICKKVSVMFDPFMYLSLPLPCTSMRTMDLTVMSADGSSLPI 479

Query: 430 TYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDH 489
             TV VPK G+  DL + L   CSL + E L V E+ N+ I RFL++P  SL+ I+D D 
Sbjct: 480 PLTVNVPKFGKFEDLHKALVTACSLPEEETLLVTEVYNNRIIRFLEEPTDSLTLIRDGDK 539

Query: 490 LAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQS 549
           L  YR+ K    +  +  +H+  E++  + +++  WKA+G PLVS +   DV +   +++
Sbjct: 540 LVVYRLKKDANNSPLIVYMHQKLEEQFISGKSSPTWKAFGIPLVSRLC--DVENGSDVEN 597

Query: 550 TVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNL 609
              ++LS F         +  +P+    T     +  ++     + +   +++++  P L
Sbjct: 598 LYLKLLSSFKMPTEFFTENLENPTEEEATDKTDTDGTTSVEDTNSTDVKETTESLPDPVL 657

Query: 610 PLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNG 669
            L L D+     +  +  +K +   + S  + V   W  K L+ Y+T  L +L EV K+G
Sbjct: 658 RLYLTDDRGNSIEAEMLKEKPV---NKSKRLNVLARWPVKELDVYDTCLLSSLPEVSKSG 714

Query: 670 PVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHL 729
             TK+ + E +SL+ CLEAFL EEPL P+DMWYCP CKE RQA KKLDLWRLPE+LVIHL
Sbjct: 715 --TKRPQ-ESVSLFKCLEAFLTEEPLGPDDMWYCPGCKEHRQAIKKLDLWRLPEILVIHL 771

Query: 730 KRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTA 789
           KRFSYSR MK+KLE +V+FP+ + +L+ Y++ KN      Y LYA++NHYG MG GHYTA
Sbjct: 772 KRFSYSRFMKNKLEAYVDFPLDNLDLSSYISYKNGQTTYRYMLYAISNHYGSMGGGHYTA 831

Query: 790 HIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           ++     +RWY+FDDSH+  I+++ +K++AAYVLFY+R
Sbjct: 832 YVH-HGGDRWYDFDDSHVHQISQEKIKTSAAYVLFYKR 868


>gi|218187268|gb|EEC69695.1| hypothetical protein OsI_39158 [Oryza sativa Indica Group]
          Length = 868

 Score =  590 bits (1521), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 341/798 (42%), Positives = 460/798 (57%), Gaps = 92/798 (11%)

Query: 69  RDYILLPQEVWNQLHSWY-GGGPTLARKVISSGLSQTELAVEVYPLRLQLLVMPRGECST 127
           R Y L+  +++++  +W+   G    +K     LS  E +V +YP+ L++ V       T
Sbjct: 102 RTYALVAADLFSKARAWHIDSGKNAGKK----SLSIEEGSVNIYPIMLRVSVTRDTNALT 157

Query: 128 IRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDIL 187
           ++ISKK+   E  +RA  I   + E + IWD+ G     LMN+ +R   D     DQ++ 
Sbjct: 158 VKISKKDNSAENFKRANKILTADSEPVHIWDFSGRTTFILMNEWNRMPQDTR-SSDQEMP 216

Query: 188 VEV------LDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNH 241
           +E+          NGTN K          K   ++ +  S S+ SI G    S G+S+  
Sbjct: 217 LEIHFYDLSEPTANGTNGK----------KDELALTMSRSMSNGSIMGMDLDSSGSSKQ- 265

Query: 242 SSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVH----- 296
                                           GL GL NLGNTCFMNSA+QCL H     
Sbjct: 266 -----------------------------VGTGLIGLDNLGNTCFMNSAVQCLAHTSKLG 296

Query: 297 ------------------TPEFARYFREDYRR---EINWQNPLGMVELLAFLLDGLHEDL 335
                             TP   R F+    R   + +  N     ELLAFLLDGLHEDL
Sbjct: 297 ELAYSFGDLLRKLWALDRTPVAPRQFKGKLARFAPQFSGFNQHDSQELLAFLLDGLHEDL 356

Query: 336 NRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSV 395
           NRVK KPY ++KD+DGRPDEEVADEYW NHIARNDSIIVD+CQGQYKSTLVCP C KVSV
Sbjct: 357 NRVKCKPYSEAKDSDGRPDEEVADEYWGNHIARNDSIIVDICQGQYKSTLVCPDCRKVSV 416

Query: 396 TFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLK 455
           TFDPFMYLSLPL +TT RTMT+TVF +DG+  PS YTV+VPK G  + LI  L   CSLK
Sbjct: 417 TFDPFMYLSLPLPSTTMRTMTITVFNTDGTTGPSPYTVSVPKSGDTKTLIDALSIACSLK 476

Query: 456 QSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQE 515
             E L VAE+ N ++ R+L++P   +S I+D D L AY++PK  + A    ++ R Q  E
Sbjct: 477 GDERLLVAEVYNSALIRYLEEPSEVISLIRDGDRLVAYKLPKDSEDAPI--VVFRNQRME 534

Query: 516 PGAAQTTSQ-WKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPF-LKKESLMHADSF--- 570
                   + WK++GTPLVSS+   D I+   I    Q++++PF + K+    AD     
Sbjct: 535 STLTSFGRKSWKSFGTPLVSSLP--DTINGSTIFELYQKVMTPFRVPKDDSSDADHIIGK 592

Query: 571 -DPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDK 629
             P    T VD + +A  ++S    K +    + +T   +    ++E      + +E D+
Sbjct: 593 SSPVEETTDVDMNSDATESTS---IKNNDCDDETMTEDGMQFYFINERFPDQRMKIEMDQ 649

Query: 630 TIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAF 689
            IR+ +S   + V V W    LE+YN   L+NL E++K    +++ + E  SLY CLEAF
Sbjct: 650 PIRLTASQKRLHVVVCWQDNGLEQYNFSSLDNLPEIYKAVLFSRRPQ-ETCSLYACLEAF 708

Query: 690 LREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFP 749
           ++EEPL PEDMWYCP CKE RQASKKLDLWRLPE+L+IHLKRFSYSR  K+KLET V+FP
Sbjct: 709 IKEEPLGPEDMWYCPGCKEHRQASKKLDLWRLPEILIIHLKRFSYSRYTKNKLETCVDFP 768

Query: 750 IHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISP 809
           +HD +L+KY+ ++       Y LYA++NHYG MG GHYTA++    +  WY+FDD H+ P
Sbjct: 769 VHDLDLSKYIGSRGQQISNHYRLYAISNHYGSMGGGHYTAYVYHEGKKGWYDFDDRHVGP 828

Query: 810 INEDDVKSAAAYVLFYRR 827
           I+E+ +K++AAYVLFYRR
Sbjct: 829 ISEESIKTSAAYVLFYRR 846


>gi|225439374|ref|XP_002270470.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like [Vitis
           vinifera]
          Length = 961

 Score =  590 bits (1520), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 366/881 (41%), Positives = 492/881 (55%), Gaps = 92/881 (10%)

Query: 8   YVNQDQPNNTGDGSSLLEHFNSAGSSASKR--PSGIDNSDLVNDATAEDPGAGPEIVDTL 65
           ++N+    + G+   +L   +S+    S     S  D+  ++N    ED G   E  +  
Sbjct: 105 WLNEAHGTSLGENEGILYTASSSTCVGSMEIMSSDFDSQIVLNLRREEDNGKN-EAAEEG 163

Query: 66  LEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVMPRGEC 125
           + G++Y LL + +W +   W+      A K + S L+      +V+PL+++L V      
Sbjct: 164 VSGQEYALLSESMWLRALKWHNDS-NAAEKDVGSILAAEVYTQDVFPLQIRLSVSWGTNS 222

Query: 126 STIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQD 185
             ++IS+K+   E++ RA +IF +  E + IWD+ G     LMND  ++ +D   + D+ 
Sbjct: 223 LLVKISQKDNPIEIYERASTIFRVESELLHIWDFSGQTTLLLMNDRTKSANDYLSRSDEQ 282

Query: 186 ILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEI 245
           IL+E+   V G     S++  G    K    +V  +K   S   G     G++ N     
Sbjct: 283 ILLEL--QVYGLT--DSMKGRG---GKKDDQMVGQTKMEGSFVSGSLKMNGSTGNF---- 331

Query: 246 STSPNLASARDSDNTLGSSGVTTRG----ASVGLTGLLNLGNTCFMNSAIQCLVHTPEFA 301
                     DS  TL  + +  RG      +GLTGL N+GNTCFMNSAIQCLVHTP+  
Sbjct: 332 ----------DSYFTLPHTKLFGRGYREAGFLGLTGLHNIGNTCFMNSAIQCLVHTPKLV 381

Query: 302 RYFREDYRREINWQNPLGM----------------------------------------- 320
            YF  DYR+EIN++NPLGM                                         
Sbjct: 382 DYFLGDYRKEINYENPLGMNGELALAFGDLLRKLWAPGATPVAPRMFKLKLSSFAPQFSG 441

Query: 321 ------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIV 374
                  E LAFLLDGLHEDLNRVK KPYI++ D DGRPDEEVADEYW NH+ARNDSIIV
Sbjct: 442 YNQHDSQEFLAFLLDGLHEDLNRVKCKPYIEAGDPDGRPDEEVADEYWRNHLARNDSIIV 501

Query: 375 DVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVT 434
           ++CQGQ++S LVCPVC KVSVTFDPFMYLSLPL +TT RTMTVTV ++DG+ LP   TVT
Sbjct: 502 NLCQGQFRSMLVCPVCKKVSVTFDPFMYLSLPLPSTTMRTMTVTVLSTDGTTLPYPCTVT 561

Query: 435 VPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYR 494
           VPK GR +DLIQ L   CSL+  E L VAEI N+ I R+L++P  SL+ I+D D L AYR
Sbjct: 562 VPKCGRLKDLIQALSIACSLRNDERLLVAEIYNNCIIRYLEEPSDSLALIRDGDRLVAYR 621

Query: 495 V---PKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTV 551
           +    K    +  +  +H   E+     +     K +G PLV  +S  +  +   I    
Sbjct: 622 LSEDSKDCDTSSLVVFMHERVEKHDINGKAELCRKMFGIPLVVRMS--ECSNGCDIHKQF 679

Query: 552 QRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLP---- 607
            ++L PF     +   DS D  +     +   E     SS ++  DA+S           
Sbjct: 680 LKLLDPFF----MPTEDSLDDITAGNAANEDTEMEDAISSTVSNGDANSDSETGDELQLG 735

Query: 608 -NLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF 666
            N    L DE       ++  +K   I      + V V W  +++EKY+T  L  L E+ 
Sbjct: 736 NNFSFYLTDEKGSTKGSNINMNKLELISQLPRRLNVLVHWPYRMIEKYDTCLLSLLPEIC 795

Query: 667 KNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLV 726
           K     K+ + E +SLY CLEAFL+EEPL PEDMW CP CK+ RQASKKLDLWRLPE+LV
Sbjct: 796 KPELFAKRPQ-ESVSLYKCLEAFLKEEPLGPEDMWNCPCCKKHRQASKKLDLWRLPEILV 854

Query: 727 IHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGH 786
           IHLKRFSYSR  K+KLETF++FPI D +L+ Y+A KNS     Y+LYA+ NHYGGMGSGH
Sbjct: 855 IHLKRFSYSRFWKNKLETFIDFPIDDLDLSTYIAQKNSHLSNHYKLYAICNHYGGMGSGH 914

Query: 787 YTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           YTA ++    N+WY FDDS +SPI ED++K++AAYVLFY+R
Sbjct: 915 YTAFVR-HGGNQWYEFDDSRVSPIGEDEIKTSAAYVLFYQR 954


>gi|222617496|gb|EEE53628.1| hypothetical protein OsJ_36905 [Oryza sativa Japonica Group]
          Length = 882

 Score =  587 bits (1512), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 344/809 (42%), Positives = 464/809 (57%), Gaps = 100/809 (12%)

Query: 69  RDYILLPQEVWNQLHSWYGGGPTLARKV-----ISSG-------LSQTELAVEVYPLRLQ 116
           R Y L+  +++++  +W+     L+R +     I SG       LS  E +V +YP+ L+
Sbjct: 102 RTYALVAADLFSKARAWFDPM-ILSRYIENQSHIDSGKNAGKKSLSIEEGSVNIYPIMLR 160

Query: 117 LLVMPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLD 176
           + V       T++ISKK+   E  +RA  I   + E + IWD+ G     LMN+ +R   
Sbjct: 161 VSVTRDTNALTVKISKKDNSAENFKRANKILTSDSEPVHIWDFSGRTTFILMNEWNRMPQ 220

Query: 177 DANIQMDQDILVEV------LDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGG 230
           D     DQ++ +E+          NGTN K          K   ++ +  S S+ SI G 
Sbjct: 221 DTR-SSDQEMPLEIHFYDLSEPTANGTNGK----------KDELALTMSRSMSNGSIMGM 269

Query: 231 WSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSA 290
              S G+S+                                  GL GL NLGNTCFMNSA
Sbjct: 270 DLDSSGSSKQ------------------------------VGTGLIGLDNLGNTCFMNSA 299

Query: 291 IQCLVH-----------------------TPEFARYFREDYRR---EINWQNPLGMVELL 324
           +QCL H                       TP   R F+    R   + +  N     ELL
Sbjct: 300 VQCLAHTSKLGELAYSFGDLLRKLWALDRTPVAPRQFKGKLARFAPQFSGFNQHDSQELL 359

Query: 325 AFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKST 384
           AFLLDGLHEDLNRVK KPY ++KD+DGRPDEEVADEYW NHIARNDSIIVD+CQGQYKST
Sbjct: 360 AFLLDGLHEDLNRVKCKPYSEAKDSDGRPDEEVADEYWGNHIARNDSIIVDICQGQYKST 419

Query: 385 LVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDL 444
           LVCP C KVSVTFDPFMYLSLPL +TT RTMT+TVF +DG+  PS YTV+VPK G  + L
Sbjct: 420 LVCPDCRKVSVTFDPFMYLSLPLPSTTMRTMTITVFNTDGTTGPSPYTVSVPKSGDTKTL 479

Query: 445 IQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVF 504
           I  L   CSLK  E L VAE+ N ++ R+L++P   +S I+D D L AY++PK  + A  
Sbjct: 480 IDALSIACSLKGDERLLVAEVYNSALIRYLEEPSEVISLIRDGDRLVAYKLPKDSEDAPI 539

Query: 505 LQLIHRLQEQEPGAAQTTSQ-WKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPF-LKKE 562
             ++ R Q  E        + WK++GTPLVSS+   D I+   I    Q++++PF + K+
Sbjct: 540 --VVFRNQRMESTLTSFGRKSWKSFGTPLVSSLP--DTINGSTIFELYQKVMTPFRVPKD 595

Query: 563 SLMHADSF----DPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESN 618
               AD       P    T VD + +A  ++S N    +    + +T   +    ++E  
Sbjct: 596 DSSGADHIIGKSSPVEETTDVDMNSDATESTSIN---NNDCDDETMTEDGMQFYFINERF 652

Query: 619 VCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTE 678
               + +E D+ IR+ +S   + V V W    LE+YN   L+NL E++K    +++ + E
Sbjct: 653 PDQRMKIEMDQPIRLTASQKRLHVVVCWQDNGLEQYNFSSLDNLPEIYKAVLFSRRPQ-E 711

Query: 679 PLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM 738
             SLY CLEAF++EEPL PEDMWYCP CKE RQASKKLDLWRLPE+L+IHLKRFSYSR  
Sbjct: 712 TCSLYACLEAFIKEEPLGPEDMWYCPGCKEHRQASKKLDLWRLPEILIIHLKRFSYSRYT 771

Query: 739 KHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR 798
           K+KLET V+FP+HD +L+KY+ ++       Y LYA++NHYG MG GHYTA++    +  
Sbjct: 772 KNKLETCVDFPVHDLDLSKYIGSRGQQISNHYRLYAISNHYGSMGGGHYTAYVYHEGKKG 831

Query: 799 WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           WY+FDD H+ PI+E+ +K++AAYVLFYRR
Sbjct: 832 WYDFDDRHVGPISEESIKTSAAYVLFYRR 860


>gi|242084278|ref|XP_002442564.1| hypothetical protein SORBIDRAFT_08g022020 [Sorghum bicolor]
 gi|241943257|gb|EES16402.1| hypothetical protein SORBIDRAFT_08g022020 [Sorghum bicolor]
          Length = 890

 Score =  582 bits (1501), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 347/828 (41%), Positives = 472/828 (57%), Gaps = 110/828 (13%)

Query: 62  VDTLLE------GRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRL 115
            D LLE       R Y LLP +++ +   WY      A K +S        +V +YP+ L
Sbjct: 93  ADELLEQTASASARSYALLPADLFAKARDWYIDSAKSAGKNVSPAGD----SVNIYPIML 148

Query: 116 QLLVMPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTL 175
           ++         T++I KK+   E  +RA  I   + E + IWD+ G   + +MN+++R+ 
Sbjct: 149 RVSATRGTYTLTVKIGKKDNSTENFKRANKILTADSEPVHIWDFSGRTTYIVMNELNRSP 208

Query: 176 DD---ANIQMDQDILVEVLDN--VNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIA-G 229
            D   A+ +M   I +  L    VNG++ K                     +  L++  G
Sbjct: 209 HDSKSADQEMPLQIHIYDLSEPMVNGSDGK---------------------RDELALTLG 247

Query: 230 GWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNS 289
           G S S G + N               D D++ GSS    +    GLTGL NLGNTCFMNS
Sbjct: 248 GSSFSNGGTMN--------------MDVDSSSGSS----KQVGSGLTGLDNLGNTCFMNS 289

Query: 290 AIQCLVHTPEFARYFREDYRREINWQNPLGMV---------------------------- 321
           A+QCL HT +   YF  D+ +EIN  NPLGM                             
Sbjct: 290 AVQCLAHTSKLVDYFLGDFHKEINPHNPLGMKGELACAFGDLLRKLWAIDRTPVAPRQFK 349

Query: 322 -------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYW 362
                              ELLAFLLDGLHEDLNRVK KPY ++KD+DGRPDEEVADEYW
Sbjct: 350 SRLGRFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYSEAKDSDGRPDEEVADEYW 409

Query: 363 ANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTS 422
            NH+ARNDSIIVD+CQGQYKSTLVCP+C KVSVTFDPFMYLSLPL  TT RTMT+TVF++
Sbjct: 410 GNHLARNDSIIVDICQGQYKSTLVCPICKKVSVTFDPFMYLSLPLPTTTMRTMTITVFST 469

Query: 423 DGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLS 482
           DG++ PS YT++VPK G  R LI  L N CSL+  E L VAE+ N+S+ R+LD+P   +S
Sbjct: 470 DGTSGPSPYTISVPKSGDTRTLINTLSNACSLRDDERLLVAEVYNNSLIRYLDEPSEVIS 529

Query: 483 TIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQ-WKAYGTPLVSSISRDDV 541
            I+D D L AYR+PK  + A    ++ R Q  E   A    + WK +GTPLVSS+   D 
Sbjct: 530 LIRDGDRLVAYRLPKDNEDAPI--VVFRNQRMESSLANFGRKSWKTFGTPLVSSLP--DT 585

Query: 542 ISSGKIQSTVQRMLSPF-LKKESLMHA-DSFDPSSMVTTVDPSGEAHSNSSSNIAKEDAS 599
           I+   I +   ++++PF + ++ +  A  +   SS+V  +  S  +   S       ++ 
Sbjct: 586 ITGSTICNLFLKVMTPFRVSRDDVPAAVKTVGESSLVDEIADSNMSADASEPTTINNNSV 645

Query: 600 SSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFL 659
             +  T   +   L +E      + +E D +I +      + V V W    L++Y+   L
Sbjct: 646 EDETGTEDVMQFFLTNERFPDQRMKIEMDLSITVKDPHKRLHVAVCWEDNGLDQYDLDSL 705

Query: 660 ENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLW 719
           ++L EV+K    +++ + +  SLY CLEAF++EEPL PEDMWYCP CKE +QASKKLDLW
Sbjct: 706 DSLPEVYKAVLFSRRPQ-DTCSLYACLEAFIKEEPLGPEDMWYCPGCKEHQQASKKLDLW 764

Query: 720 RLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHY 779
           RLPE+L+IHLKR SYSR  K+KLETFV+FPIHD +L+KY+ ++       Y LYA++NHY
Sbjct: 765 RLPEILIIHLKRCSYSRYTKYKLETFVDFPIHDLDLSKYIGHRCQDVPHNYRLYAISNHY 824

Query: 780 GGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           G +G GHYTA++    +  WY+FDD H+ PI ED +K++AAYVLFYRR
Sbjct: 825 GSLGGGHYTAYVYHEGKKGWYDFDDRHVGPITEDSIKTSAAYVLFYRR 872


>gi|224059196|ref|XP_002299762.1| predicted protein [Populus trichocarpa]
 gi|222847020|gb|EEE84567.1| predicted protein [Populus trichocarpa]
          Length = 624

 Score =  580 bits (1496), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 303/619 (48%), Positives = 394/619 (63%), Gaps = 57/619 (9%)

Query: 259 NTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDYRREINWQNPL 318
           N+    G +    S+GLTGL NLGNTCFMNSAIQCL HTP+   YF  DY RE+N +NPL
Sbjct: 11  NSSAFFGRSGEAGSLGLTGLQNLGNTCFMNSAIQCLAHTPKLVDYFLGDYGREVNHKNPL 70

Query: 319 GM-----------------------------------------------VELLAFLLDGL 331
           GM                                                ELLAFLLDGL
Sbjct: 71  GMNGEIALAFGDLLRRLWAPGATPVAPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGL 130

Query: 332 HEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCN 391
           HEDLNRVK KPY+++KD + RPDEEVADEYW NH+ARNDS+IVDVCQGQYKSTLVCP C 
Sbjct: 131 HEDLNRVKSKPYVEAKDEESRPDEEVADEYWQNHVARNDSVIVDVCQGQYKSTLVCPDCR 190

Query: 392 KVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNI 451
           KVSVTFDPFMYLSLPL +T TRTMT+TV ++DGS  PS+YT++VPK G+C DLI  L   
Sbjct: 191 KVSVTFDPFMYLSLPLPSTNTRTMTLTVVSADGSIQPSSYTISVPKFGKCEDLIHALSIA 250

Query: 452 CSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRL 511
           CSL   E L VAE+ N+ I RFL++P   LS I+D+D L AYR+ K    +  +  +H+ 
Sbjct: 251 CSLGIDETLLVAEVYNNRIIRFLEEPADYLSLIRDNDRLVAYRLKKDFDNSPLVVFMHQH 310

Query: 512 QEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFD 571
            E+     + TS WKA+G PLV ++   + +S   I +   ++++PF         +  D
Sbjct: 311 MEEHYFHGKLTSSWKAFGIPLVGNVH--NFVSGSDIHNLYLQLVAPFRIPPDGTLDNDLD 368

Query: 572 PSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPN---LPLQLVDESNVCFDLSVEGD 628
            S+ +  V+  G   + SSS        S+K V LP+   L   L DE  +  D ++  +
Sbjct: 369 -STTIEEVE--GMVDNTSSSPDGDAKPCSAKGVELPSDSELQFYLTDEKGMVKDENIVMN 425

Query: 629 KTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEA 688
           + +          V V W +KL ++Y+T  L +L E+FK+G   K+ + E +SLY CLEA
Sbjct: 426 EPVPKIGLHRRFNVLVCWPEKLTKQYDTSLLSSLPEIFKSGFFAKRPQ-ESVSLYNCLEA 484

Query: 689 FLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNF 748
           FL+EEPL PEDMWYCP CK+ RQASKKLDLWRLPE+LVIHLKRFSY+ S K+KLET+V+F
Sbjct: 485 FLKEEPLGPEDMWYCPSCKQHRQASKKLDLWRLPEILVIHLKRFSYTHSAKNKLETYVDF 544

Query: 749 PIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHIS 808
           P+ D +L+ +++ KN      Y LYA++NHYG MG GHYTA I     ++WY+FDDSH+S
Sbjct: 545 PVDDLDLSTHLSYKNGQLSHRYMLYAISNHYGSMGGGHYTAFIH-YGGDQWYDFDDSHVS 603

Query: 809 PINEDDVKSAAAYVLFYRR 827
           PI+++ +K++AAYVLFYRR
Sbjct: 604 PISQEKIKTSAAYVLFYRR 622


>gi|297613547|ref|NP_001067298.2| Os12g0621000 [Oryza sativa Japonica Group]
 gi|255670491|dbj|BAF30317.2| Os12g0621000 [Oryza sativa Japonica Group]
          Length = 864

 Score =  579 bits (1493), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 341/798 (42%), Positives = 460/798 (57%), Gaps = 96/798 (12%)

Query: 69  RDYILLPQEVWNQLHSWY-GGGPTLARKVISSGLSQTELAVEVYPLRLQLLVMPRGECST 127
           R Y L+  +++++  +W+   G    +K     LS  E +V +YP+ L++ V       T
Sbjct: 102 RTYALVAADLFSKARAWHIDSGKNAGKK----SLSIEEGSVNIYPIMLRVSVTRDTNALT 157

Query: 128 IRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDIL 187
           ++ISKK+   E  +RA  I   + E + IWD+ G     LMN+ +R   D     DQ++ 
Sbjct: 158 VKISKKDNSAENFKRANKILTSDSEPVHIWDFSGRTTFILMNEWNRMPQDTR-SSDQEMP 216

Query: 188 VEV------LDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNH 241
           +E+          NGTN K          K   ++ +  S S+ SI G    S G+S+  
Sbjct: 217 LEIHFYDLSEPTANGTNGK----------KDELALTMSRSMSNGSIMGMDLDSSGSSKQ- 265

Query: 242 SSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVH----- 296
                                           GL GL NLGNTCFMNSA+QCL H     
Sbjct: 266 -----------------------------VGTGLIGLDNLGNTCFMNSAVQCLAHTSKLG 296

Query: 297 ------------------TPEFARYFREDYRR---EINWQNPLGMVELLAFLLDGLHEDL 335
                             TP   R F+    R   + +  N     ELLAFLLDGLHEDL
Sbjct: 297 ELAYSFGDLLRKLWALDRTPVAPRQFKGKLARFAPQFSGFNQHDSQELLAFLLDGLHEDL 356

Query: 336 NRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSV 395
           NRVK KPY ++KD+DGRPDEEVADEYW NHIARNDSIIVD+CQGQYKSTLVCP C KVSV
Sbjct: 357 NRVKCKPYSEAKDSDGRPDEEVADEYWGNHIARNDSIIVDICQGQYKSTLVCPDCRKVSV 416

Query: 396 TFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLK 455
           TFDPFMYLSLPL +TT RTMT+TVF +DG+  PS YTV+VPK G  + LI  L   CSLK
Sbjct: 417 TFDPFMYLSLPLPSTTMRTMTITVFNTDGTTGPSPYTVSVPKSGDTKTLIDALSIACSLK 476

Query: 456 QSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQE 515
             E L VAE+ N ++ R+L++P   +S I+D D L AY++PK  + A    ++ R Q  E
Sbjct: 477 GDERLLVAEVYNSALIRYLEEPSEVISLIRDGDRLVAYKLPKDSEDAPI--VVFRNQRME 534

Query: 516 PGAAQTTSQ-WKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPF-LKKESLMHADSF--- 570
                   + WK++GTPLVSS+   D I+   I    Q++++PF + K+    AD     
Sbjct: 535 STLTSFGRKSWKSFGTPLVSSLP--DTINGSTIFELYQKVMTPFRVPKDDSSGADHIIGK 592

Query: 571 -DPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDK 629
             P    T VD + +A  ++S N    +    + +T   +    ++E      + +E D+
Sbjct: 593 SSPVEETTDVDMNSDATESTSIN---NNDCDDETMTEDGMQFYFINERFPDQRMKIEMDQ 649

Query: 630 TIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAF 689
            IR+ +S   + V VD     LE+YN   L+NL E++K    +++ + E  SLY CLEAF
Sbjct: 650 PIRLTASQKRLHV-VD---NGLEQYNFSSLDNLPEIYKAVLFSRRPQ-ETCSLYACLEAF 704

Query: 690 LREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFP 749
           ++EEPL PEDMWYCP CKE RQASKKLDLWRLPE+L+IHLKRFSYSR  K+KLET V+FP
Sbjct: 705 IKEEPLGPEDMWYCPGCKEHRQASKKLDLWRLPEILIIHLKRFSYSRYTKNKLETCVDFP 764

Query: 750 IHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISP 809
           +HD +L+KY+ ++       Y LYA++NHYG MG GHYTA++    +  WY+FDD H+ P
Sbjct: 765 VHDLDLSKYIGSRGQQISNHYRLYAISNHYGSMGGGHYTAYVYHEGKKGWYDFDDRHVGP 824

Query: 810 INEDDVKSAAAYVLFYRR 827
           I+E+ +K++AAYVLFYRR
Sbjct: 825 ISEESIKTSAAYVLFYRR 842


>gi|13374862|emb|CAC34496.1| ubiquitin-specific protease-like protein [Arabidopsis thaliana]
          Length = 901

 Score =  577 bits (1487), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 350/907 (38%), Positives = 496/907 (54%), Gaps = 121/907 (13%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSAS---KRPSGIDNSDLVNDATAE-DPG 56
           WW+   D +    P+ + +   +L +  S GSS     K  + I NSD++ D   E D  
Sbjct: 33  WWKDAQDSM----PSESVEKREIL-YTASCGSSYGGPMKLINNIFNSDILFDLRREGDAL 87

Query: 57  AGPEIVDTLLEGRDYILLPQEVWNQ-LHSWYGGGPTLARKVISSGL-------------- 101
              E  +  + GRD+ L+  ++W Q L         +   V S+ +              
Sbjct: 88  QNGETGEASVSGRDFALVSSDMWLQALKCIRSNDSFMEFFVFSASVHSLENEFLKKRLRY 147

Query: 102 ---SQTELAV-----------EVYPLRLQLLVMPRGECSTIRISKKETIGELHRRACSIF 147
                TE  V           +VYP++L+L V+       ++I KK+   E  RRAC IF
Sbjct: 148 HDDKNTEKGVKSFSAGGVDRGDVYPVQLRLSVLQETNSLAVKICKKDNSVECFRRACKIF 207

Query: 148 YLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNG 207
            L+ EQ+ IWD  G       +D+  +  D   Q DQ+IL+E+   + G +    ++++ 
Sbjct: 208 SLDSEQLRIWDISGQTTLFFESDVSNS-KDCQQQADQEILLEL--QIYGLSDSIKLKES- 263

Query: 208 FAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVT 267
              KK      + +  +  + GG     G S                    N+L   G  
Sbjct: 264 ---KKEDGSTQQTNGITNGMNGGTVFRFGRS--------------------NSLSFLGKA 300

Query: 268 TRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDYRREINWQNPLGMV------ 321
               ++GLTGL NLGNTCFMNS++QCL HTP+   +F  +Y +EIN  NPLGM       
Sbjct: 301 GEAGTLGLTGLQNLGNTCFMNSSLQCLAHTPKLVDFFLGEYSKEINLDNPLGMKGEIALA 360

Query: 322 -----------------------------------------ELLAFLLDGLHEDLNRVKH 340
                                                    ELLAFLLDGLHEDLNRVK+
Sbjct: 361 FGDLLRSLWAPGASTVAPRTFKAKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKN 420

Query: 341 KPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPF 400
           KPY+++KD DGRPD EVADEYW NH+ARNDSIIVDVCQGQYKSTLVCP+C KVSV FDPF
Sbjct: 421 KPYVEAKDGDGRPDAEVADEYWRNHVARNDSIIVDVCQGQYKSTLVCPICKKVSVMFDPF 480

Query: 401 MYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEEL 460
           MYLSLPL  T+ RTM +TV ++DGS+LP   TV VPK G+  DL + L   CSL + E L
Sbjct: 481 MYLSLPLPCTSMRTMDLTVMSADGSSLPIPLTVNVPKFGKFEDLHKALVTACSLPEEETL 540

Query: 461 KVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQ 520
            V E+ N+ I RFL++P  SL+ I+D D L  YR+ K    +  +  +H+  E++  + +
Sbjct: 541 LVTEVYNNRIIRFLEEPTDSLTLIRDGDKLVVYRLKKDANNSPLIVYMHQKLEEQFISGK 600

Query: 521 TTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVD 580
           ++  WKA+G PLVS +   DV +   +++   ++LS F         +  +P+    T  
Sbjct: 601 SSPTWKAFGIPLVSRLC--DVENGSDVENLYLKLLSSFKMPTEFFTENLENPTEEEATDK 658

Query: 581 PSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSI 640
              +  ++     + +   +++++  P L L L D+     +  +  +K +   + S  +
Sbjct: 659 TDTDGTTSVEDTNSTDVKETTESLPDPVLRLYLTDDRGNSIEAEMLKEKPV---NKSKRL 715

Query: 641 VVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
            V   W  K L+ Y+T  L +L EV K+G  TK+ + E +SL+ CLEAFL EEPL P+DM
Sbjct: 716 NVLARWPVKELDVYDTCLLSSLPEVSKSG--TKRPQ-ESVSLFKCLEAFLTEEPLGPDDM 772

Query: 701 WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
           WYCP CKE RQA KKLDLWRLPE+LVIHLKRFSYSR MK+KLE +V+FP+ + +L+ Y++
Sbjct: 773 WYCPGCKEHRQAIKKLDLWRLPEILVIHLKRFSYSRFMKNKLEAYVDFPLDNLDLSSYIS 832

Query: 761 NKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAA 820
            KN      Y LYA++NHYG MG GHYTA++     +RWY+FDDSH+  I+++ +K++AA
Sbjct: 833 YKNGQTTYRYMLYAISNHYGSMGGGHYTAYVH-HGGDRWYDFDDSHVHQISQEKIKTSAA 891

Query: 821 YVLFYRR 827
           YVLFY+R
Sbjct: 892 YVLFYKR 898


>gi|297812317|ref|XP_002874042.1| ubiquitin carboxyl-terminal hydrolase 8 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297319879|gb|EFH50301.1| ubiquitin carboxyl-terminal hydrolase 8 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 891

 Score =  576 bits (1485), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 322/767 (41%), Positives = 452/767 (58%), Gaps = 85/767 (11%)

Query: 109 EVYPLRLQLLVMPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALM 168
           +VYP++L+L V+       ++I KK+   E  RRAC IF L+ EQ+ IWD  G       
Sbjct: 159 DVYPVQLRLSVLQETNSLAVKICKKDNSVECFRRACKIFSLDSEQLRIWDISGQTTLFFE 218

Query: 169 NDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIA 228
           +D+  +  D   Q DQ++L+E+   + G +    ++++    KK      + +  +  I 
Sbjct: 219 SDVSNS-KDCQQQADQEMLLEL--QIYGLSDSIKLKES----KKEDGSTQQTNGITNGIN 271

Query: 229 GGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMN 288
           GG     G S + S  +                G +G      ++GLTGL NLGNTCFMN
Sbjct: 272 GGTVFRFGRSNSLSFLVKA--------------GEAG------TLGLTGLQNLGNTCFMN 311

Query: 289 SAIQCLVHTPEFARYFREDYRREINWQNPLGMV--------------------------- 321
           S++QCL HTP+   +F  +Y +EIN  NPLGM                            
Sbjct: 312 SSLQCLAHTPKLVDFFLGEYSKEINLDNPLGMKGEIALAFGDLLRSLWAPGSSTVAPRTF 371

Query: 322 --------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEY 361
                               ELLAFLLDGLHEDLNRV++KPY+++KD DGRPD EVADEY
Sbjct: 372 KAKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVRNKPYVEAKDGDGRPDAEVADEY 431

Query: 362 WANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFT 421
           W NH+ARNDSIIVD+CQGQYKSTLVCP+C KVSV FDPFMYLSLPL  T+ RTM +TV +
Sbjct: 432 WRNHVARNDSIIVDLCQGQYKSTLVCPICKKVSVMFDPFMYLSLPLPCTSMRTMDLTVMS 491

Query: 422 SDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISL 481
           +DGS+LP   TV VPK G+  DL + L   CSL + E L V E+ N+ I RFL++P  SL
Sbjct: 492 ADGSSLPIPLTVNVPKFGKFEDLHKALVTACSLPEEETLLVTEVYNNRIIRFLEEPTDSL 551

Query: 482 STIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDV 541
           + I+D D L  YR+ K    +  +  +H+  E++  + +++  WKA+G PLVS +   DV
Sbjct: 552 TLIRDGDKLVVYRLKKDANNSPLIVYMHQKLEEQFISGKSSPTWKAFGIPLVSRLC--DV 609

Query: 542 ISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDAS-S 600
            +   +++   ++LS F K  +    ++ +  +     D +    + S  +I   D   +
Sbjct: 610 ENGSDLENLYLKLLSSF-KMPTEFFTENLENRTEEEATDKADTDGTTSVEDINSTDVKET 668

Query: 601 SKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLE 660
           ++++  P L L L D+     +  +  +K +   + S  + V   W  K L+ Y+T  + 
Sbjct: 669 TESLPDPVLRLYLTDDRGNSIESEILKEKPV---NKSKRVNVLARWPVKDLDVYDTCLMS 725

Query: 661 NLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWR 720
           +L EV K G  TK+ + E +SL+ CLEAFL EEPL P+DMWYCP CKE RQA KKLDLWR
Sbjct: 726 SLPEVSKFG--TKRPQ-ESVSLFKCLEAFLTEEPLGPDDMWYCPGCKEHRQAIKKLDLWR 782

Query: 721 LPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYG 780
           LPE+LVIHLKRFSYSR MK+KLE +V+FP+ D +L+ Y++ KN      Y LYA++NHYG
Sbjct: 783 LPEILVIHLKRFSYSRFMKNKLEAYVDFPLDDLDLSSYISYKNGQTTYRYMLYAISNHYG 842

Query: 781 GMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            MG GHYTA++     +RWY+FDDSH+ PI+++ +K++AAYVLFY+R
Sbjct: 843 SMGGGHYTAYVH-HGGDRWYDFDDSHVHPISQEKIKTSAAYVLFYKR 888


>gi|449526856|ref|XP_004170429.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 5-like [Cucumis
           sativus]
          Length = 496

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 291/429 (67%), Positives = 325/429 (75%), Gaps = 55/429 (12%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           WWQHWI+YVNQDQP NT DGSS  E ++S GSS  KRP+ IDNSDL+ DA +ED  AG E
Sbjct: 48  WWQHWIEYVNQDQPINTNDGSSFAEIYDSFGSSMLKRPASIDNSDLIYDAASEDSSAGIE 107

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVM 120
           I DTLLEGRDY+LLPQEVWNQL  WYGGGP LARKVIS+GLSQTEL VEVYPLRLQLL +
Sbjct: 108 IHDTLLEGRDYVLLPQEVWNQLCLWYGGGPKLARKVISAGLSQTELTVEVYPLRLQLLEV 167

Query: 121 PRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANI 180
           P+G+ STIRISKKETIGELHRRAC IF LNLEQ+CIWDYYGHRKHALMNDMD+TLDDANI
Sbjct: 168 PKGDRSTIRISKKETIGELHRRACEIFDLNLEQVCIWDYYGHRKHALMNDMDKTLDDANI 227

Query: 181 QMDQDILVEVLDNVNGT---NCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGT 237
           QMDQDILVE+L++ N      C S +QDNG  +K+A+S+ +E SKS+L  AGG   +KG 
Sbjct: 228 QMDQDILVEILNHGNHNALGGCTSYVQDNGTTDKEATSIHLEASKSNLISAGG-MPNKGA 286

Query: 238 SRNHSSEISTSPN-LASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVH 296
           S+   +E+  S N  +S ++ DN  G SGV+TRG+S GLTGLLNLGNTCFMNSAIQCLVH
Sbjct: 287 SK---TEVVQSQNPTSSIKELDNAYGQSGVSTRGSSCGLTGLLNLGNTCFMNSAIQCLVH 343

Query: 297 TPEFARYFREDYRREINWQNPLGMV----------------------------------- 321
           TPEFARYFREDY +EINWQNPLGMV                                   
Sbjct: 344 TPEFARYFREDYHQEINWQNPLGMVGELAMAFGDLLRKLWAPGRTSVAPRPFKAKLARFA 403

Query: 322 ------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARN 369
                       ELLAFLLDGLHEDLNRVKHKPYIKS+DADGRPDEEVADEYWANHIARN
Sbjct: 404 PQFSGYNQHDSQELLAFLLDGLHEDLNRVKHKPYIKSRDADGRPDEEVADEYWANHIARN 463

Query: 370 DSIIVDVCQ 378
           DSIIVDVCQ
Sbjct: 464 DSIIVDVCQ 472


>gi|449501186|ref|XP_004161301.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like [Cucumis
           sativus]
          Length = 949

 Score =  569 bits (1466), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 318/822 (38%), Positives = 470/822 (57%), Gaps = 97/822 (11%)

Query: 66  LEGRDYILLPQEVWNQL---HSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVMPR 122
             GR+Y L+ + +W Q    H+ +        ++        ++   V+PL++++LV   
Sbjct: 161 FSGREYALIGESMWLQALKRHNDFEATSNYGGRL----FRDEDILQAVFPLQIRILVSWE 216

Query: 123 GECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQM 182
               T++I++K+     ++RA  IF  N E   IWD+ G       N+ +  LD + +Q 
Sbjct: 217 TNLLTVKINRKDNSANFYKRASVIFNSNSELFHIWDFSGQTNKLFTNNSNNFLDGSLVQG 276

Query: 183 DQDILVEV-----LDNVNGTNCKSS-IQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKG 236
            +++L+E+     LDN+ G   K + + +     +K+ +++                  G
Sbjct: 277 VKEVLLELQVLETLDNMMGRYGKGAKLTEEQRKTEKSPTII-----------------NG 319

Query: 237 TSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVH 296
            +      ++ S  + +     N+ G +      +S+GLTGL NLGNTCFMNSA+QCLVH
Sbjct: 320 ITEKVKFHLTESDRMIAG----NSFGVA------SSMGLTGLQNLGNTCFMNSALQCLVH 369

Query: 297 TPEFARYFREDYRREINWQNPLGMV----------------------------------- 321
           TP+   YF  ++++EIN+ NPLGM                                    
Sbjct: 370 TPKLVDYFLGNFQKEINYDNPLGMKGELALAFGDLLRKLWAPGSKSVPPRMFKLKLANFA 429

Query: 322 ------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARN 369
                       E L+FLLDGLHEDLNRVK KPY ++KD +GR DEEVA+EYW NH+ARN
Sbjct: 430 PQFSGYNQHDSQEFLSFLLDGLHEDLNRVKCKPYFEAKDVEGRRDEEVAEEYWQNHLARN 489

Query: 370 DSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPS 429
           DSIIVD+CQGQY+STLVCP CNK+SVTFDPFMYLSLPL +TT R+MT+ V + DG +LPS
Sbjct: 490 DSIIVDLCQGQYRSTLVCPACNKLSVTFDPFMYLSLPLPSTTMRSMTLMVISCDGISLPS 549

Query: 430 TYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDH 489
           T+TV+VPK GR +DLI  L   CSL+  E L +AE+  + I R L+DP  SL+ I+++D 
Sbjct: 550 TFTVSVPKSGRLKDLIDALSTACSLRADETLLLAEVYKNRICRVLEDPSDSLALIRNEDK 609

Query: 490 LAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQS 549
           L AYR P+  + +  +  +H+  E    + +  S  K +G P V+ +   D+     I+ 
Sbjct: 610 LVAYRFPRDEESSKLIVYMHQQSETHDNSGKLISGSKTFGAPFVAKVP--DLPHESDIRQ 667

Query: 550 TVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNL 609
              + L P LK  +     + D  + V+  D      ++  +N+  + + + + +    L
Sbjct: 668 LFLKFLDP-LKMPAEESFSNCDGEAGVSANDDFEMDDASDPANLDPDGSPNDETIVNSCL 726

Query: 610 P----LQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEV 665
           P      L  +        ++ ++ + I  S+  + V V W   ++ KY+T  + +L +V
Sbjct: 727 PADFTFYLAHQMGASEGTLIKPNEPLAISKSTERLDVIVMWPDTMVNKYDTCLMSSLPDV 786

Query: 666 FKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVL 725
            K     ++ + E + LY CLEAFL+EEPL P+DMWYCP+CK+ +QA KKLDLWRLPE+L
Sbjct: 787 SKPNLHPRRLQ-ESVDLYKCLEAFLKEEPLGPDDMWYCPRCKKPQQARKKLDLWRLPEIL 845

Query: 726 VIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSG 785
           VIHLKRFSYSR  K+KLETFV+FPI D +L+ Y+A +NS     Y LYA++NHYGGMG+G
Sbjct: 846 VIHLKRFSYSRFFKNKLETFVDFPIDDLDLSNYIAYQNSHLSNRYMLYAVSNHYGGMGAG 905

Query: 786 HYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           HYTA++  L   +WY+FDD  + P++ED VKS+AAYVLFY+R
Sbjct: 906 HYTAYV--LHGGKWYDFDDDRVIPVSEDVVKSSAAYVLFYKR 945


>gi|357155832|ref|XP_003577253.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like
           [Brachypodium distachyon]
          Length = 879

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 336/793 (42%), Positives = 455/793 (57%), Gaps = 78/793 (9%)

Query: 68  GRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVMPRGECST 127
            R Y L+  +++ +  +W+      A+      L   E +V +YP+ L++ V       T
Sbjct: 112 ARSYALVAADLFGKARAWHLES---AKSNGKGSLLTEETSVNIYPIMLRVSVTRGTNALT 168

Query: 128 IRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDIL 187
           ++ISKK+   E  +RA  I   + E + IWD+ G     LMN+ +R   D     DQ++ 
Sbjct: 169 VKISKKDNSVENFKRATKILAPDSEPVHIWDFSGRTTFILMNEWNRMPQDLR-SSDQEMP 227

Query: 188 VEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEIST 247
           +E             IQ    +E  ++  + +  + +L++                    
Sbjct: 228 LE-------------IQFYDMSEPTSNGAVGKKDELALTMG------------------- 255

Query: 248 SPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFA------ 301
           S  L++    D  L SS    +    GLTGL NLGNTCFMNS++QCL HT +        
Sbjct: 256 SSVLSNGSIMDMDLDSSSGICKQVGSGLTGLDNLGNTCFMNSSVQCLAHTSKLGELAYSF 315

Query: 302 -----------------RYFREDYRR---EINWQNPLGMVELLAFLLDGLHEDLNRVKHK 341
                            R F+    R   + +  N     ELLAFLLDGLHEDLNRVK K
Sbjct: 316 GDLLRKLWTIDRSSFSPRQFKARLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCK 375

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
           PY ++KD+DGRPDEEVADEYW NH+ARNDSIIVD CQGQYKSTLVCP+C KVSVTFDPFM
Sbjct: 376 PYSEAKDSDGRPDEEVADEYWGNHLARNDSIIVDTCQGQYKSTLVCPLCKKVSVTFDPFM 435

Query: 402 YLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELK 461
           YLSLPL +TT RTMT+TVF++DG   PS YTV VPK G  + LI  L N CSL+  E L 
Sbjct: 436 YLSLPLPSTTMRTMTITVFSTDGITGPSPYTVNVPKSGDTKTLINALSNACSLRDDERLL 495

Query: 462 VAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQT 521
           VAE+ N SI R+L++P   +S I+D D L AYR+PK  + A  +   ++  E    +   
Sbjct: 496 VAEVYNSSIIRYLEEPSEVISLIRDGDRLVAYRLPKDSEDAPIVVFKNQRMESSLSSFGR 555

Query: 522 TSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPF-LKKESLMHADSFD-PSSMVTTV 579
            S WK +G PLVSS+     I+   I +   ++L PF + K+ +  AD  +  SS V  +
Sbjct: 556 KS-WKNFGAPLVSSLP--GTINGHTIYNLFLQLLVPFRVSKDDIADADQINCKSSAVNGI 612

Query: 580 DP----SGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPS 635
                 SG A   S  N A EDA     +T   +   L +E        +E D+ +  P 
Sbjct: 613 ADMDMGSGAAECASIHNNAGEDA----IMTDTAMEFYLNNERFPDQHFKIEMDQVV-TPG 667

Query: 636 SSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPL 695
               + V V W    L++YN   L++L E++K+    ++ + E  SLY CLEAF++EEPL
Sbjct: 668 LRKRLHVIVCWQDDGLKQYNLDSLDSLPEIYKSVLFARRPQ-ETCSLYACLEAFIKEEPL 726

Query: 696 VPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNL 755
            PEDMWYCP CKE RQASKKLDLWRLPE+L+IHLKRFSYSR  K+KL+TFV+FPIHD +L
Sbjct: 727 GPEDMWYCPGCKEHRQASKKLDLWRLPEILIIHLKRFSYSRYTKNKLDTFVDFPIHDLDL 786

Query: 756 TKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPIN-EDD 814
           +K+V +++      Y+LYA++NHYG MG GHYTA++    E RWY+FDD  +  ++ ED 
Sbjct: 787 SKFVRDRSGQLSNHYQLYAVSNHYGSMGGGHYTAYVFHEGEKRWYDFDDRSVERVDKEDS 846

Query: 815 VKSAAAYVLFYRR 827
           +K++AAYVLFYRR
Sbjct: 847 IKTSAAYVLFYRR 859


>gi|147827032|emb|CAN59993.1| hypothetical protein VITISV_009779 [Vitis vinifera]
          Length = 518

 Score =  562 bits (1449), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 299/429 (69%), Positives = 331/429 (77%), Gaps = 52/429 (12%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           WWQ W++YVNQDQ NN  D SSL EH +S  SS  KRPS IDNSDL+ D T+ED   G E
Sbjct: 48  WWQQWLEYVNQDQANNI-DVSSLSEHCDSVSSSDVKRPSVIDNSDLIYDMTSEDSTMGIE 106

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVM 120
           + DTL+EGRDYILLPQEVWNQL++WYGGGPTL RKVI+SGLSQT L+VEVYPLRLQL+V+
Sbjct: 107 LHDTLVEGRDYILLPQEVWNQLYAWYGGGPTLPRKVINSGLSQTGLSVEVYPLRLQLVVV 166

Query: 121 PRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANI 180
           P+G  STIRISKKETIGELHRRAC IF LN+EQ+CIWDYYGHRKHALMNDMD+TLDDANI
Sbjct: 167 PKGAHSTIRISKKETIGELHRRACEIFDLNMEQVCIWDYYGHRKHALMNDMDKTLDDANI 226

Query: 181 QMDQDILVEVLDNVNGT---NCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGT 237
           Q DQD+LVEV  N + +    C SS+Q+NG A+K+  SVLVEPSKSSLSIAGG SASKG 
Sbjct: 227 QTDQDVLVEVHSNGSSSAFGGCMSSVQENGSADKETMSVLVEPSKSSLSIAGGLSASKGV 286

Query: 238 SRNHSSEISTSPNLAS-ARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVH 296
           SR+ SSE+S S NL S  R+ D+T G SGV+TRGA+ GLTGLLNLGNTCFMNSAIQCLVH
Sbjct: 287 SRSCSSELSQSQNLTSPVRELDSTYGVSGVSTRGATGGLTGLLNLGNTCFMNSAIQCLVH 346

Query: 297 TPEFARYFREDYRREINWQNPLGMV----------------------------------- 321
           TPEFARYFREDY +EINWQNPLGMV                                   
Sbjct: 347 TPEFARYFREDYHKEINWQNPLGMVGELALAFGDLLRKLWAPGRTPVAPRPFKTKLARFA 406

Query: 322 ------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARN 369
                       ELLAFLLDGLHEDLNRVKHKPYIKS+DADGRPDEEVADEYWANHIARN
Sbjct: 407 PQFSGYNQHDSQELLAFLLDGLHEDLNRVKHKPYIKSRDADGRPDEEVADEYWANHIARN 466

Query: 370 DSIIVDVCQ 378
           DSIIVDVCQ
Sbjct: 467 DSIIVDVCQ 475


>gi|240256325|ref|NP_568411.4| ubiquitin-specific protease 8 [Arabidopsis thaliana]
 gi|240256327|ref|NP_851052.4| ubiquitin-specific protease 8 [Arabidopsis thaliana]
 gi|332005587|gb|AED92970.1| ubiquitin-specific protease 8 [Arabidopsis thaliana]
 gi|332005588|gb|AED92971.1| ubiquitin-specific protease 8 [Arabidopsis thaliana]
          Length = 913

 Score =  562 bits (1449), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 349/919 (37%), Positives = 497/919 (54%), Gaps = 133/919 (14%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSAS---KRPSGIDNSDLVNDATAE-DPG 56
           WW+   D +    P+ + +   +L +  S GSS     K  + I NSD++ D   E D  
Sbjct: 33  WWKDAQDSM----PSESVEKREIL-YTASCGSSYGGPMKLINNIFNSDILFDLRREGDAL 87

Query: 57  AGPEIVDTLLEGRDYILLPQEVWNQ-------------LHSWYGGGPTLARKVISSGL-- 101
              E  +  + GRD+ L+  ++W Q                +     +L  + +   L  
Sbjct: 88  QNGETGEASVSGRDFALVSSDMWLQALKCIRSNDSFMEFFVFSASVHSLENEFLKKRLRY 147

Query: 102 ---SQTELAV-----------EVYPLRLQLLVMPRGE--CSTIRISKKETIGELH----- 140
                TE  V           +VYP++L+L V+        + R+S  + I  L+     
Sbjct: 148 HDDKNTEKGVKSFSAGGVDRGDVYPVQLRLSVLQETNSLAWSARLSFDKMIKNLNWILDN 207

Query: 141 -----RRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVN 195
                RRAC IF L+ EQ+ IWD  G       +D+  +  D   Q DQ+IL+E+   + 
Sbjct: 208 SVECFRRACKIFSLDSEQLRIWDISGQTTLFFESDVSNS-KDCQQQADQEILLEL--QIY 264

Query: 196 GTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASAR 255
           G +    ++++    KK      + +  +  + GG     G S                 
Sbjct: 265 GLSDSIKLKES----KKEDGSTQQTNGITNGMNGGTVFRFGRS----------------- 303

Query: 256 DSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDYRREINWQ 315
              N+L   G      ++GLTGL NLGNTCFMNS++QCL HTP+   +F  +Y +EIN  
Sbjct: 304 ---NSLSFLGKAGEAGTLGLTGLQNLGNTCFMNSSLQCLAHTPKLVDFFLGEYSKEINLD 360

Query: 316 NPLGMV-----------------------------------------------ELLAFLL 328
           NPLGM                                                ELLAFLL
Sbjct: 361 NPLGMKGEIALAFGDLLRSLWAPGASTVAPRTFKAKLARFAPQFSGFNQHDSQELLAFLL 420

Query: 329 DGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCP 388
           DGLHEDLNRVK+KPY+++KD DGRPD EVADEYW NH+ARNDSIIVDVCQGQYKSTLVCP
Sbjct: 421 DGLHEDLNRVKNKPYVEAKDGDGRPDAEVADEYWRNHVARNDSIIVDVCQGQYKSTLVCP 480

Query: 389 VCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVL 448
           +C KVSV FDPFMYLSLPL  T+ RTM +TV ++DGS+LP   TV VPK G+  DL + L
Sbjct: 481 ICKKVSVMFDPFMYLSLPLPCTSMRTMDLTVMSADGSSLPIPLTVNVPKFGKFEDLHKAL 540

Query: 449 GNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLI 508
              CSL + E L V E+ N+ I RFL++P  SL+ I+D D L  YR+ K    +  +  +
Sbjct: 541 VTACSLPEEETLLVTEVYNNRIIRFLEEPTDSLTLIRDGDKLVVYRLKKDANNSPLIVYM 600

Query: 509 HRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHAD 568
           H+  E++  + +++  WKA+G PLVS +   DV +   +++   ++LS F         +
Sbjct: 601 HQKLEEQFISGKSSPTWKAFGIPLVSRLC--DVENGSDVENLYLKLLSSFKMPTEFFTEN 658

Query: 569 SFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGD 628
             +P+    T     +  ++     + +   +++++  P L L L D+     +  +  +
Sbjct: 659 LENPTEEEATDKTDTDGTTSVEDTNSTDVKETTESLPDPVLRLYLTDDRGNSIEAEMLKE 718

Query: 629 KTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEA 688
           K +   + S  + V   W  K L+ Y+T  L +L EV K+G  TK+ + E +SL+ CLEA
Sbjct: 719 KPV---NKSKRLNVLARWPVKELDVYDTCLLSSLPEVSKSG--TKRPQ-ESVSLFKCLEA 772

Query: 689 FLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNF 748
           FL EEPL P+DMWYCP CKE RQA KKLDLWRLPE+LVIHLKRFSYSR MK+KLE +V+F
Sbjct: 773 FLTEEPLGPDDMWYCPGCKEHRQAIKKLDLWRLPEILVIHLKRFSYSRFMKNKLEAYVDF 832

Query: 749 PIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHIS 808
           P+ + +L+ Y++ KN      Y LYA++NHYG MG GHYTA++     +RWY+FDDSH+ 
Sbjct: 833 PLDNLDLSSYISYKNGQTTYRYMLYAISNHYGSMGGGHYTAYVH-HGGDRWYDFDDSHVH 891

Query: 809 PINEDDVKSAAAYVLFYRR 827
            I+++ +K++AAYVLFY+R
Sbjct: 892 QISQEKIKTSAAYVLFYKR 910


>gi|4115923|gb|AAD03434.1| contains similarity to ubiquitin carboxyl-terminal hydrolase family
           2 (Pfam:PF00443, score=40.0, E=5.2e-08, N=1) and
           (Pfam:PF00442, Score=37.9 E=5.3e-10, N=1) [Arabidopsis
           thaliana]
          Length = 887

 Score =  560 bits (1442), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 352/881 (39%), Positives = 500/881 (56%), Gaps = 134/881 (15%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W+  W  YV Q             + + S  SS + RP  IDN D++    +E     P+
Sbjct: 52  WYTSWEKYVEQST-----------KEYISGESSEASRPGPIDNHDIIE---SESDVNDPQ 97

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVM 120
           +   L+E  DY+L+PQEVW +L  WY GGP + RK+I  G      +VEVYPL L +L  
Sbjct: 98  LRRLLMERVDYVLVPQEVWKRLVEWYSGGPPIERKLICQGFYTRSYSVEVYPLCL-MLTD 156

Query: 121 PRGECST-IRISKKETIGELHRRACS------------------------IFYLNLEQIC 155
            R E  T IR+ K+ +I EL+ + C+                        IF+   +Q  
Sbjct: 157 GRDESRTVIRLGKQASIRELYEKVCALTGVPQEKDALFRYEDFAALPHIDIFFY--KQAH 214

Query: 156 IWDYYGHRKHALMNDMD-RTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKAS 214
           IWDY+  RK+ L++ +  ++L+++++ MDQDIL+EV D  + +    S   N  A     
Sbjct: 215 IWDYFDKRKNGLLDSLSYKSLEESSLHMDQDILLEV-DGSSSSQSAMSSTGNELA----- 268

Query: 215 SVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRG---- 270
            V +EPS+SS++IAGG + S G S   +S  S  P + S  D  N+L   G   +G    
Sbjct: 269 LVPLEPSRSSVTIAGGPTLSNGHST--TSNFSLFPRITSEDDGSNSLSILGKGEKGGLAG 326

Query: 271 -ASVGLTGLLN-----------------------------LG---NTCFMNSAIQCLVHT 297
            +++G T  +N                             LG   + C++N     ++  
Sbjct: 327 LSNLGNTCFMNSALQCLAHTPPIVEYFLQDYSDDINRDNPLGMCVSACYLNLLFTHVMGE 386

Query: 298 PEFA------------------RYFREDYRR---EINWQNPLGMVELLAFLLDGLHEDLN 336
              A                  R F+    R   + +  N     ELLAFLLDGLHEDLN
Sbjct: 387 LAIAFGDLLKKLWSSGRNSVAPRAFKTKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLN 446

Query: 337 RVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVT 396
           +VK KPYI+ KD+D RPD+EVA+E W  H ARNDS+IVDVCQGQYKSTLVCP C K+S+T
Sbjct: 447 KVKRKPYIELKDSDSRPDDEVAEELWNYHKARNDSVIVDVCQGQYKSTLVCPACGKISIT 506

Query: 397 FDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQ 456
           FDPFMYLS+PL +T TR+MTVTVF  DGS LP  YTV VPK+G  RDLI  LG  C L +
Sbjct: 507 FDPFMYLSVPLPSTLTRSMTVTVFYCDGSHLPMPYTVIVPKNGSIRDLITALGTACLLAE 566

Query: 457 SEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKA--VFLQLIHRLQEQ 514
            E L +AE+ +H I ++ ++PL SLS+IKDD+H+ AYR+ ++ K +    L+++H  Q++
Sbjct: 567 DESLLLAEVYDHKIFKYFENPLDSLSSIKDDEHIVAYRLNQMPKGSGKAKLEILHGGQKR 626

Query: 515 EPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLK--KESLMHADSFDP 572
           +          K +GTP V+ ++ +  +S   I + + R LSP  K    S +H  S + 
Sbjct: 627 D---------VKLFGTPFVTYVNTEP-LSGADIDAVLSRFLSPLHKVHAPSKIHNGSENG 676

Query: 573 SSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIR 632
                TVD + E  S+  + I  +DAS  +     +  + L DE  + F   ++ + +I 
Sbjct: 677 HLPDATVDEASEILSSPDTEI--DDASDREL----SFRIFLTDERGLNFK-PLQSESSI- 728

Query: 633 IPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLRE 692
             S   +  V V+W++   E+Y++ +L +L EV K     KK R E +SL++CLEAFL E
Sbjct: 729 --SLGIATRVLVEWNEGEHERYDSSYLSDLPEVHKTSFSAKKTRQESISLFSCLEAFLAE 786

Query: 693 EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHD 752
           EPL P+DMW+CP CKE RQA+KKLDLW+LP++LV HLKRF+YSR +K+K++TFVNFP+HD
Sbjct: 787 EPLGPDDMWFCPSCKEHRQANKKLDLWKLPDILVFHLKRFTYSRYLKNKIDTFVNFPVHD 846

Query: 753 FNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKL 793
            +L+KYV NKN  +  LYELYA++NHYGG+G GHYTA+ K+
Sbjct: 847 LDLSKYVKNKN-DQSYLYELYAVSNHYGGLGGGHYTAYAKV 886


>gi|326500890|dbj|BAJ95111.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 722

 Score =  543 bits (1400), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 324/745 (43%), Positives = 424/745 (56%), Gaps = 92/745 (12%)

Query: 99  SGLSQTELAVEVYPLRLQLLVMPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWD 158
           S L   E +V +YP+ L++ V       T++IS+K+   E  ++A  I     E + IWD
Sbjct: 14  SSLLTEEASVNIYPIMLRVSVTRGTNALTVKISRKDNSAENFKKANKILASESEPVHIWD 73

Query: 159 YYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLV 218
           + G     LMN+ +R   D     DQ++ +E             IQ    +E  A+    
Sbjct: 74  FSGRTTFILMNEWNRMPQDTR-SSDQEMPLE-------------IQFYDISEPPANGAAG 119

Query: 219 EPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGL 278
              K  LS+  G SA                  ++    D  L SSG   +    GL GL
Sbjct: 120 R--KDELSLTMGSSA-----------------FSNGGIMDMDLDSSGGICKQVGSGLIGL 160

Query: 279 LNLGNTCFMNSAIQCLVHTPEFARYFREDYRREINWQNPLGMV----------------- 321
            NLGNTCFMNSA+QCL HT +   +F  DY++EIN  NPLGM                  
Sbjct: 161 DNLGNTCFMNSAVQCLAHTSKLVDFFLGDYQKEINTHNPLGMKGELAYSFGDLVRKLWAI 220

Query: 322 ------------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADG 351
                                         ELLAFLLDGLHEDLNRVK KPY ++KD+DG
Sbjct: 221 DGTSFSPRQFKARLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDSDG 280

Query: 352 RPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATT 411
           RPDEEVADEYW NH+ARNDSIIVD CQGQYKSTLVCP+C KVS+TFDPFMYLSLPL +TT
Sbjct: 281 RPDEEVADEYWGNHLARNDSIIVDTCQGQYKSTLVCPLCKKVSITFDPFMYLSLPLPSTT 340

Query: 412 TRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQ 471
            RTMTVTVF++DGS  PS YTV++PK G  + LI  L N CSL+  E L VAE+ N S+ 
Sbjct: 341 MRTMTVTVFSTDGSIGPSPYTVSIPKSGDFKTLINALSNACSLRDDERLLVAEVYNSSLI 400

Query: 472 RFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTP 531
           R+L+DP   +S I+D D L AYR+PK  + A  +       E    +    S WK +GTP
Sbjct: 401 RYLEDPSDDISLIRDGDKLVAYRLPKDSEGAPVVVFKSERMESSISSFGRKS-WKNFGTP 459

Query: 532 LVSSISRDDVISSGKIQSTVQRMLSPF-LKKESLMHADSF----DPSSMVTTVDPSGEAH 586
           LVS++   D I    I + + + L+PF + K+  + AD       P +  + VD S +A 
Sbjct: 460 LVSNLP--DTIDGRTIYNLLLKALTPFRVSKDDALDADQITGKSSPVNETSDVDMSSDAA 517

Query: 587 SNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDW 646
             SS N    +A     +T   +   L  E      L +E D+TI + +    ++V V W
Sbjct: 518 ECSSMNT---NAGEDDMMTEGGMLFSLNTERFPNQRLKIEMDQTITLSNLQKRLIVSVSW 574

Query: 647 SQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQC 706
               L++YN   L++L EV+K    T+K + E  SLY CLEAF++EEPL PEDMWYCP C
Sbjct: 575 QDNGLKQYNLDSLDSLPEVYKTVLFTRKPQ-ETCSLYACLEAFIKEEPLGPEDMWYCPGC 633

Query: 707 KERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSR 766
           KE RQASKKLDLWRLPE+L+IHLKRFSYSR  K+KL+T+V+FPIHD +L+ Y+ +++   
Sbjct: 634 KEHRQASKKLDLWRLPEILIIHLKRFSYSRYTKNKLDTYVDFPIHDLDLSSYIRDRSGQM 693

Query: 767 RQLYELYALTNHYGGMGSGHYTAHI 791
              Y+LYA++NHYG MG GHYTA++
Sbjct: 694 SNHYQLYAVSNHYGSMGGGHYTAYV 718


>gi|414883586|tpg|DAA59600.1| TPA: hypothetical protein ZEAMMB73_544083 [Zea mays]
          Length = 874

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 328/832 (39%), Positives = 455/832 (54%), Gaps = 127/832 (15%)

Query: 69  RDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVMPRGECSTI 128
           R Y L+P +  ++  +    G  L  K   +G S        YPL L++ V       T+
Sbjct: 96  RSYALVPADELSRALARQNSGLGLQNKHSFAGDS-----AGAYPLVLRISVR-ETSILTL 149

Query: 129 RISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILV 188
           +ISKK+   E ++RA  IF ++ + + +WD+ G     LMN+ +R  D      DQ+ L+
Sbjct: 150 KISKKDNPFENYKRANKIFNVDSQPVHVWDFSGQTNLILMNEWNRLHD--CCHADQENLL 207

Query: 189 EVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTS 248
           EV             Q    ++   S +                   GT++ +  +IS  
Sbjct: 208 EV-------------QVYAMSDSLTSKI------------------GGTNKENYGDISD- 235

Query: 249 PNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDY 308
                  +SD++  S G   R  S+GL GL NLGNTCFMNS+IQCL HTP+   YF  DY
Sbjct: 236 ------MNSDSSYRSFG---RAGSMGLIGLENLGNTCFMNSSIQCLAHTPKLVEYFLGDY 286

Query: 309 RREINWQNPLGM-----------------------------------------------V 321
            + IN  NPLG+                                                
Sbjct: 287 AKNINRTNPLGLNGELALAFGELLRSLWTTDGKPVPPHYFKEKIACFAPQFGGFNQHDSQ 346

Query: 322 ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQY 381
           ELLAFLLDGLHEDLN+VK KPY ++KDA GRPDEEVADEYW+NH+ARNDS+IVD C GQY
Sbjct: 347 ELLAFLLDGLHEDLNQVKCKPYEEAKDASGRPDEEVADEYWSNHLARNDSVIVDTCHGQY 406

Query: 382 KSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRC 441
           KSTL CP C+K SVTFDPFMYLSLP+ +T  R MTVTVF++DGS  P +Y V+VPK G  
Sbjct: 407 KSTLTCPTCSKTSVTFDPFMYLSLPVPSTAKRVMTVTVFSTDGSREPCSYDVSVPKFGTL 466

Query: 442 RDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKK 501
            DL+Q L  +C L   E L V E+ N+ I R+L++P  S+S ++D D LAAYR+PK  +K
Sbjct: 467 SDLVQALSIVCLLGDDEILLVTEVYNNCIIRYLEEPSDSVSLLRDGDKLAAYRLPKRHEK 526

Query: 502 AVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPF-LK 560
           +  +   H+   Q       T Q + +  PL++++  +  IS   +Q    ++LSPF L 
Sbjct: 527 SPLVVFTHQHFVQHSSDGNLTPQMREFEAPLLAALPEE--ISGLSLQDIYLKLLSPFQLS 584

Query: 561 KESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDA-----SSSKAVTLPNLPLQLVD 615
             +    D  + +S   +VD   ++ S +  N   ED       S+    +   P  L D
Sbjct: 585 NGASSLNDCMESNS--DSVDTPSDSGSINFQNSQLEDGPESNHCSASECEVTKGPDDLYD 642

Query: 616 -------ESNVCFDLSVEGDKT-------------IRIPSSSTSIVVYVDWSQKLLEKYN 655
                  E+++ F+  ++ ++              + + ++ + + V V W Q    KY 
Sbjct: 643 GVSGSNKEAHMDFEFYLKSERGEGQQQKIEINELHLLLETAPSRLHVNVHWLQNASRKYA 702

Query: 656 THFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKK 715
           T  L NL E+ K   +  K   + ++L+ CLEAFL+EEPL PEDMWYCP+CK+ +QA KK
Sbjct: 703 TSMLNNLPEIHKL-ELIPKGTEDSVALHGCLEAFLKEEPLGPEDMWYCPRCKKHQQAMKK 761

Query: 716 LDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYAL 775
           LDLWRLPEVLVIHLKRFSY++  ++KLETFV+FP  D +L+ YVA+K+      Y LYA+
Sbjct: 762 LDLWRLPEVLVIHLKRFSYTQFTRNKLETFVDFPTVDLDLSSYVADKSEQPSSHYRLYAV 821

Query: 776 TNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           +NHYG MG GHYTA I   +   WY FDD  ++P++ED +K+ AAYVLFYRR
Sbjct: 822 SNHYGNMGGGHYTASIYHEEGKGWYKFDDDCVTPMSEDSIKTPAAYVLFYRR 873


>gi|242042990|ref|XP_002459366.1| hypothetical protein SORBIDRAFT_02g003380 [Sorghum bicolor]
 gi|241922743|gb|EER95887.1| hypothetical protein SORBIDRAFT_02g003380 [Sorghum bicolor]
          Length = 867

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 314/792 (39%), Positives = 430/792 (54%), Gaps = 131/792 (16%)

Query: 110 VYPLRLQLLVMPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMN 169
            YPL L++ V       T++ISKK+   E ++RA  IF ++ + + +WD+ G     LMN
Sbjct: 132 AYPLVLRISVR-ETSILTLKISKKDNPVENYKRANKIFNVDSQPVHVWDFSGQTNLILMN 190

Query: 170 DMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAG 229
           + +R  D      DQ+ L+E             +Q    ++   S +            G
Sbjct: 191 EWNRLHD--CCHADQENLLE-------------VQVYAMSDSLTSKI------------G 223

Query: 230 GWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNS 289
           G                         +SD +  S G   R  S+GL GL NLGNTCFMNS
Sbjct: 224 G-----------------------DMNSDLSYRSFG---RAGSMGLIGLENLGNTCFMNS 257

Query: 290 AIQCLVHTPEFARYFREDYRREINWQNPLGM----------------------------- 320
           +IQCL HTP+   YF  DY   IN  NPLG+                             
Sbjct: 258 SIQCLAHTPKLVDYFLGDYANNINRTNPLGLNGELALAFGELLRSLWTDRKPIPPHHFKE 317

Query: 321 -----------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWA 363
                             ELLAFLLDGLHEDLN+VK KPY ++KDA GRPDEEVADEYW+
Sbjct: 318 KIACFAPQFSGFNQHDSQELLAFLLDGLHEDLNQVKCKPYEEAKDASGRPDEEVADEYWS 377

Query: 364 NHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSD 423
           NH+ARNDS+IVD C GQYKSTL CP C+K SVTFDPFMYLSLP+ +T  R MTVTVF++D
Sbjct: 378 NHLARNDSVIVDTCHGQYKSTLTCPTCSKTSVTFDPFMYLSLPVPSTAKRVMTVTVFSTD 437

Query: 424 GSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLST 483
           GS  P +Y V+VPK G   DL+Q L   C L   E L V E+ N+ I R+L++P  S+S 
Sbjct: 438 GSREPCSYDVSVPKFGTLSDLVQALSIACLLGDDEILLVTEVYNNCIIRYLEEPSDSVSL 497

Query: 484 IKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVIS 543
           ++D D LAAYR+PK  +K+ F+   H+  ++       T Q + +  PL++++   + I+
Sbjct: 498 LRDGDKLAAYRLPKRHEKSPFVVFTHQYFDEHSSDDNLTRQMREFEAPLLAALP--ETIN 555

Query: 544 SGKIQSTVQRMLSPFL---KKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKED--- 597
              +Q    ++LSPF    +  SL      +  S+  T   S ++ SNS  N   ED   
Sbjct: 556 GLSLQDIYLKLLSPFRLSNRAGSLNVCMESNSDSIDLTDATSSDSGSNSFQNSQSEDGPE 615

Query: 598 ----------------------ASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPS 635
                                 + S+K   +      L +E        +E ++   + +
Sbjct: 616 SSHCSASECEIMKRPDDLCDGGSDSNKEAQMEEFEFYLKNERGDGQLQKIEINELDLLET 675

Query: 636 SSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPL 695
           + + + V V W +   +KY T  L NL E+ K   +  K   + ++L+ CLEAFL+EEPL
Sbjct: 676 APSRLHVNVHWLRNASKKYATSMLSNLPEIHK-LELIPKGTEDSVALHGCLEAFLKEEPL 734

Query: 696 VPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNL 755
            PEDMWYCP CK+ +QA KKLDLWRLPEVLVIHLKRFSY++  ++KLETFV+FP  D +L
Sbjct: 735 GPEDMWYCPCCKKHQQAMKKLDLWRLPEVLVIHLKRFSYTQFTRNKLETFVDFPTTDLDL 794

Query: 756 TKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDV 815
           + Y+A+K+      Y LYA++NHYG MG GHYTA I   +   WY FDD +++P++ED +
Sbjct: 795 SSYIADKSKQPSSHYRLYAISNHYGNMGGGHYTASIYHEEGKGWYKFDDDYVTPMSEDSI 854

Query: 816 KSAAAYVLFYRR 827
           K++AAYVLFYRR
Sbjct: 855 KTSAAYVLFYRR 866


>gi|224088124|ref|XP_002308332.1| predicted protein [Populus trichocarpa]
 gi|222854308|gb|EEE91855.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 291/629 (46%), Positives = 381/629 (60%), Gaps = 77/629 (12%)

Query: 259 NTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDYRREINWQNPL 318
           N+   SG    G  +GL GL NLGNTCFMNSAIQCL HTP+   YF  DY +EIN +N L
Sbjct: 16  NSQSGSGFRVFGY-LGLRGLQNLGNTCFMNSAIQCLAHTPKLVDYFLGDYGKEINQENLL 74

Query: 319 GMV-----------------------------------------------ELLAFLLDGL 331
           G                                                 E L+FLLDGL
Sbjct: 75  GTKGELALAFGDLLSKLWTPRDTPVAPAIFKRKLADFAPQFSGYNQHDSQEFLSFLLDGL 134

Query: 332 HEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCN 391
           HEDLNRVK KPYI  KDA+GR DE VA+EYW NH+ARNDSIIVD+CQGQY+STLVCP CN
Sbjct: 135 HEDLNRVKSKPYIAIKDAEGRLDEVVAEEYWRNHLARNDSIIVDLCQGQYQSTLVCPACN 194

Query: 392 KVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNI 451
           K SVTFDPFMYLSLPL +TT RTMT+TV ++DG  LP+  TVTVPK GR +DLI+ L   
Sbjct: 195 KKSVTFDPFMYLSLPLPSTTMRTMTLTVLSTDGMNLPTPITVTVPKCGRQKDLIEALSIA 254

Query: 452 CSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRL 511
           CSL+  E L V EI  + I R L +P  S++ I+D+D L AYR+ K  + +  +  +H  
Sbjct: 255 CSLRNDEMLMVVEIYKNRIFRRLTEPSDSVALIRDEDKLVAYRLLKDNRNSPMVVFMHER 314

Query: 512 QEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHAD--- 568
            E+     +     K +G P V+ +  +++ +   +     ++LSP      LM AD   
Sbjct: 315 VERPCEFERAIPNLKLFGIPFVARL--ENLYTGFDLHKQYLKLLSPL-----LMPADDAL 367

Query: 569 -SFDPSSMVTTVDPSGE-------AHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVC 620
             +D   + T  D + E       + SN+ S+   ED   S +    +    L D     
Sbjct: 368 NDYDDVGITTNEDSTMEDVVCPTISDSNTGSDTGTEDDQCSSS----DFQFYLKDGMR-- 421

Query: 621 FDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPL 680
               ++ ++ + +P  S ++ VYV WS+ ++EKY+T  L +L EV K     ++ + E +
Sbjct: 422 -STEIKMNEPLPVPKFSDNLEVYVTWSESMIEKYDTCLLSSLPEVLKPQLYARRPQ-ESV 479

Query: 681 SLYTCLEAFLREEPLVPEDMWY--CPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM 738
           SLY CLEAFL+EEPL PEDMW   CP CK+ RQA KKLDLWRLPE+LV+HLKRFSYSR +
Sbjct: 480 SLYKCLEAFLKEEPLGPEDMWLVDCPSCKKPRQARKKLDLWRLPEILVVHLKRFSYSRYI 539

Query: 739 KHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR 798
           ++KLET+V+FPI DF+L+ Y + K+S     Y LYA++NH+GGMG GHY A I  L   +
Sbjct: 540 RNKLETYVDFPIDDFDLSTYTSKKDSQFSNHYVLYAISNHHGGMGCGHYDAFID-LGYRK 598

Query: 799 WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           WY FDDS +SP++EDD+K++AAYVLFYRR
Sbjct: 599 WYEFDDSRVSPVSEDDIKTSAAYVLFYRR 627


>gi|357111554|ref|XP_003557577.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like
           [Brachypodium distachyon]
          Length = 882

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 316/805 (39%), Positives = 429/805 (53%), Gaps = 143/805 (17%)

Query: 110 VYPLRLQLLVMPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMN 169
            YPL L++ V       TI+ISKK+   + ++RA  +F ++ + + +WD+ G     LMN
Sbjct: 133 AYPLVLRISVR-ETNILTIKISKKDNPVDNYKRANKMFNIDSQPVHVWDFSGQTNLILMN 191

Query: 170 DMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAG 229
           + +R+  D     +Q+ L+EV                           V     SL+   
Sbjct: 192 EWNRSHQDY-CHSEQENLLEVQ--------------------------VYAMSDSLTFKI 224

Query: 230 GWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNS 289
           G     GT+ N                 D + GS G   R  S+GL GL NLGNTCFMNS
Sbjct: 225 G-----GTNMN----------------VDMSYGSIG---RAGSMGLIGLENLGNTCFMNS 260

Query: 290 AIQCLVHTPEFARYFREDYRREINWQNPLGM----------------------------- 320
           +IQCL HT +   YF  DY R+IN  NPLG+                             
Sbjct: 261 SIQCLAHTTKLVDYFLGDYDRDINRTNPLGLNGELALAFGELLRSLWTNDRKQVAPHHFK 320

Query: 321 ------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYW 362
                              ELLAFLLDGLHEDLN VK KPY ++KDA GRPDEEVADEYW
Sbjct: 321 AKIACFAPQFSGFNQHDSQELLAFLLDGLHEDLNHVKCKPYEEAKDASGRPDEEVADEYW 380

Query: 363 ANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTS 422
           +NH+ARNDS+IVD C GQYKSTL CP C+K SVTFDPFMYLSLP+ +   R MTVTVF++
Sbjct: 381 SNHLARNDSVIVDTCHGQYKSTLTCPTCSKTSVTFDPFMYLSLPVPSMAKRAMTVTVFST 440

Query: 423 DGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLS 482
           DGS  P +Y V VPK G   DL+QVL   CSL+  E L V E+ N+ I R+L++P  S+S
Sbjct: 441 DGSREPFSYDVRVPKFGTLSDLVQVLSAACSLRDDETLLVTEVYNNRIIRYLEEPSDSIS 500

Query: 483 TIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVI 542
            ++D D LAAYR+PK  +K+  +   H+   +  G +    Q K +  PL++S+   +++
Sbjct: 501 LLRDGDKLAAYRLPKQYEKSSLVVFTHKYVAEHSGVSNVAPQIKEFEAPLLASLP--EIV 558

Query: 543 SSGKIQSTVQRMLSP--FLKK-ESLMHADSFDPSSMVTTVDPSGE--------------- 584
           S   ++S   ++L P  F K   S+    S +    V  +D +G+               
Sbjct: 559 SGLTLESIYLKLLYPLRFSKSISSITGCGSCNGDCAVDLMDATGDCAADLMDATPSDSDG 618

Query: 585 ----AHSNSSSNIAKEDASSSKAVTLPN------------------LPLQLVDESNVCFD 622
               A S      +  DA+ S+ +  P+                      L +  +    
Sbjct: 619 NCQSAQSEDGPERSHCDANESEVMEEPSESNCGGTAISDKEAHREQFEFYLTNGRDDVQH 678

Query: 623 LSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSL 682
             +E +    + ++ + + V V W   +  +YNT  L NL E+ K   +  K   + ++L
Sbjct: 679 KRMEMNDLNLLETTPSRLHVDVHWQHSVARQYNTSMLNNLPEIHK-LELIPKGTEDSVAL 737

Query: 683 YTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKL 742
           + CLEAFL+EEPL PEDMWYCP CK+ +QA KKLDLWRLPEVLVIHLKRFSY++  ++KL
Sbjct: 738 HGCLEAFLKEEPLGPEDMWYCPCCKKHQQAMKKLDLWRLPEVLVIHLKRFSYTQFTRNKL 797

Query: 743 ETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNF 802
           ET V+FPI D +L+ Y+A K+      Y LYA++NHYG MG GHYTA I   +   WY F
Sbjct: 798 ETSVDFPISDLDLSPYIAAKHEQPNSHYHLYAISNHYGNMGGGHYTASI-YQEGKGWYKF 856

Query: 803 DDSHISPINEDDVKSAAAYVLFYRR 827
           DD  ++PI ED +K+ AAYVLFYRR
Sbjct: 857 DDECVTPIREDSIKTPAAYVLFYRR 881


>gi|218199123|gb|EEC81550.1| hypothetical protein OsI_24972 [Oryza sativa Indica Group]
          Length = 885

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 318/815 (39%), Positives = 448/815 (54%), Gaps = 120/815 (14%)

Query: 91  TLARKVISSGL----SQTELAVEVYPLRLQLLVMPRGECSTIRISKKETIGELHRRACSI 146
            LAR+  S  L    S  E +   YPL L++ V       T++ISKK+   E ++RA  I
Sbjct: 112 VLARQNSSLALHNKHSFAEDSAGAYPLVLRISVR-ETSILTVKISKKDNPVENYKRAYKI 170

Query: 147 FYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDN 206
           F ++ + + +WD+ G     LMN+ +R+  D                     C S +++ 
Sbjct: 171 FNIDSQPVHVWDFSGQTNLILMNEWNRSNHDC--------------------CHSELEN- 209

Query: 207 GFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGV 266
                    V V     SL+   G     GTS+ ++ + S   N     D D + GS G 
Sbjct: 210 ------ILEVQVYAMSDSLTSKIG-----GTSKEYTEQSSADVN---DMDVDLSYGSFG- 254

Query: 267 TTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDYRREINWQNPLGM------ 320
             R +S GL GL NLGNTCFMNS+IQCL HT +   YF  DY R+IN  NPLG+      
Sbjct: 255 --RSSSHGLIGLENLGNTCFMNSSIQCLAHTSKLVDYFLGDYDRDINRTNPLGLNGELAL 312

Query: 321 -----------------------------------------VELLAFLLDGLHEDLNRVK 339
                                                     ELLAFLLDGLHEDLN+VK
Sbjct: 313 AFGELLRRLWNTERKPVSPHHFKAKIACFAPQFSGFNQHDSQELLAFLLDGLHEDLNQVK 372

Query: 340 HKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDP 399
            KPY ++KDA GRPD+EVADEYW+NH+ARNDS+IVD   GQYKSTL CP C+K SVTFDP
Sbjct: 373 CKPYEEAKDASGRPDKEVADEYWSNHLARNDSVIVDTYHGQYKSTLTCPTCSKTSVTFDP 432

Query: 400 FMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEE 459
           FMYLSLP+ +T  RTMTVTVF++DGS  P +Y VTVP+ G   DL+Q L + CSL   E 
Sbjct: 433 FMYLSLPVPSTAKRTMTVTVFSTDGSIEPISYDVTVPQFGSLNDLVQALSSACSLGDDEI 492

Query: 460 LKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAA 519
           L + E+ N+ I R+L++P  S+S ++D D LAA+R+P+  +K+  +   H+  ++     
Sbjct: 493 LLITEVYNNRILRYLEEPSDSVSLLRDGDKLAAFRLPRKYEKSPVVVFTHQYFDERSSID 552

Query: 520 QTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSP--FLKK-ESLMHADSFDPSSMV 576
             T Q K +  PL++ +   +  +   +++   ++L P  F K   SL  +   +     
Sbjct: 553 NITPQMKEFEAPLLAVLP--ERANGLTLKNIYLKLLEPLRFSKSTSSLNDSGRCNSGCAA 610

Query: 577 TTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVC-------------FDL 623
             +D + ++ S   S  ++    SS++ T+     +   ESN+              F+ 
Sbjct: 611 VMMDATPDSDSKFQSAPSENAPESSQSETIECQMTEGPSESNIGDTTDSDREAHMEEFEF 670

Query: 624 SV-----EGDKT------IRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVT 672
            +     E  +T      + + ++   +++ V W Q  + +Y+T  L++L E+ K   + 
Sbjct: 671 YLINGRGEFQQTRIQTDEVDLQTTPNRLLINVHWQQNAVGQYDTSMLKSLPEIHK-LELI 729

Query: 673 KKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF 732
            K   + ++L+ CLEAFL+EEPL PEDMWYCP CK+ +QA KKLDLWRLPEVLVIHLKRF
Sbjct: 730 PKGNEDSVALHGCLEAFLKEEPLGPEDMWYCPCCKKHQQAMKKLDLWRLPEVLVIHLKRF 789

Query: 733 SYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIK 792
           SY++  ++KLETFV+FPI D +L+ Y+ +K+      Y LYA++NHYG MG GHYTA I 
Sbjct: 790 SYTQFTRNKLETFVDFPISDLDLSSYIIDKSELSDCHYRLYAISNHYGNMGGGHYTASIY 849

Query: 793 LLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             +   WY FDD  + PI ED +K+ AAYVLFYRR
Sbjct: 850 HEEGKGWYKFDDECVRPITEDSIKTPAAYVLFYRR 884


>gi|222636464|gb|EEE66596.1| hypothetical protein OsJ_23160 [Oryza sativa Japonica Group]
          Length = 885

 Score =  520 bits (1340), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 318/815 (39%), Positives = 448/815 (54%), Gaps = 120/815 (14%)

Query: 91  TLARKVISSGL----SQTELAVEVYPLRLQLLVMPRGECSTIRISKKETIGELHRRACSI 146
            LAR+  S  L    S  E +   YPL L++ V       T++ISKK+   E ++RA  I
Sbjct: 112 VLARQNSSLALHNKHSFAEDSAGAYPLVLRISVR-ETSILTVKISKKDNPVENYKRAYKI 170

Query: 147 FYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDN 206
           F ++ + + +WD+ G     LMN+ +R+  D                     C S +++ 
Sbjct: 171 FNIDSQPVHVWDFSGQTNLILMNEWNRSNHDC--------------------CHSELEN- 209

Query: 207 GFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGV 266
                    V V     SL+   G     GTS+ ++ + S   N     D D + GS G 
Sbjct: 210 ------ILEVQVYAMSDSLTSKIG-----GTSKEYTEQSSADVN---DMDVDLSYGSFG- 254

Query: 267 TTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDYRREINWQNPLGM------ 320
             R +S GL GL NLGNTCFMNS+IQCL HT +   YF  DY R+IN  NPLG+      
Sbjct: 255 --RSSSHGLIGLENLGNTCFMNSSIQCLAHTSKLVDYFLGDYDRDINRTNPLGLNGELAL 312

Query: 321 -----------------------------------------VELLAFLLDGLHEDLNRVK 339
                                                     ELLAFLLDGLHEDLN+VK
Sbjct: 313 AFGELLRRLWNTERKPVSPHHFKAKIACFAPQFSGFNQHDSQELLAFLLDGLHEDLNQVK 372

Query: 340 HKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDP 399
            KPY ++KDA GRPD+EVADEYW+NH+ARNDS+IVD   GQYKSTL CP C+K SVTFDP
Sbjct: 373 CKPYEEAKDASGRPDKEVADEYWSNHLARNDSVIVDTYHGQYKSTLTCPTCSKTSVTFDP 432

Query: 400 FMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEE 459
           FMYLSLP+ +T  RTMTVTVF++DGS  P +Y VTVP+ G   DL+Q L + CSL   E 
Sbjct: 433 FMYLSLPVPSTAKRTMTVTVFSTDGSIEPISYDVTVPQFGSLNDLVQALSSACSLGDDEI 492

Query: 460 LKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAA 519
           L + E+ N+ I R+L++P  S+S ++D D LAA+R+P+  +K+  +   H+  ++     
Sbjct: 493 LLITEVYNNRILRYLEEPSDSVSLLRDGDKLAAFRLPRKYEKSPVVVFTHQYFDERSSID 552

Query: 520 QTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSP--FLKK-ESLMHADSFDPSSMV 576
             T Q K +  PL++ +   +  +   +++   ++L P  F K   SL  +   +     
Sbjct: 553 NITPQMKEFEAPLLAVLP--ERANGLTLKNIYLKLLEPLRFSKSTSSLNDSGRCNSGCAA 610

Query: 577 TTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVC-------------FDL 623
             +D + ++ S   S  ++    SS++ T+     +   ESN+              F+ 
Sbjct: 611 VMMDATPDSDSKFQSAPSENAPESSQSETIECQMTEGPSESNIGDTTDSDREAHMEEFEF 670

Query: 624 SV-----EGDKT------IRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVT 672
            +     E  +T      + + ++   +++ V W Q  + +Y+T  L++L E+ K   + 
Sbjct: 671 YLINGRGEFQQTRIQTDEVDLQTTPNRLLINVHWQQNAVGQYDTSMLKSLPEIHK-LELI 729

Query: 673 KKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF 732
            K   + ++L+ CLEAFL+EEPL PEDMWYCP CK+ +QA KKLDLWRLPEVLVIHLKRF
Sbjct: 730 PKGNEDSVALHGCLEAFLKEEPLGPEDMWYCPCCKKHQQAMKKLDLWRLPEVLVIHLKRF 789

Query: 733 SYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIK 792
           SY++  ++KLETFV+FPI D +L+ Y+ +K+      Y LYA++NHYG MG GHYTA I 
Sbjct: 790 SYTQFTRNKLETFVDFPISDLDLSSYIIDKSELSDCHYRLYAISNHYGNMGGGHYTASIY 849

Query: 793 LLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             +   WY FDD  + PI ED +K+ AAYVLFYRR
Sbjct: 850 HEEGKGWYKFDDECVRPITEDSIKTPAAYVLFYRR 884


>gi|326529625|dbj|BAK04759.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 884

 Score =  517 bits (1331), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 325/851 (38%), Positives = 447/851 (52%), Gaps = 157/851 (18%)

Query: 69  RDYILLPQEVWNQLHSWYGGGPTLARKVISSGL----SQTELAVEVYPLRLQLLVMPRGE 124
           R Y L+P +  ++          LAR+  S  L    S  E +   YPL L++ V     
Sbjct: 98  RSYALVPADELSR---------ALARQNSSLALHNKHSFAEDSAGAYPLVLRISVR-ETS 147

Query: 125 CSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQ 184
             T++ISKK+   + ++RA  +F ++ + + +WD+ G     LMN+ +R+  D     +Q
Sbjct: 148 ILTVKISKKDNPVDNYKRANKMFNIDSQPVHVWDFSGQTNLILMNEWNRSHQDY-CHSEQ 206

Query: 185 DILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSE 244
           + L+EV                           V     SL+   G     GTS N    
Sbjct: 207 ENLLEVQ--------------------------VYAMSDSLTFKIG-----GTSMN---- 231

Query: 245 ISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF 304
                        D + G+ G   R +++GL GL NLGNTCFMNS+IQCL HT +   YF
Sbjct: 232 ------------VDMSCGNFG---RVSAMGLIGLENLGNTCFMNSSIQCLAHTTKLVDYF 276

Query: 305 REDYRREINWQNPLGM-------------------------------------------- 320
             DY  +IN  NPLG+                                            
Sbjct: 277 LGDYDSDINQTNPLGLNGELALTFGELLRSLWTNDRNTVAPHNFKAKIACFAPQFSGFNQ 336

Query: 321 ---VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVC 377
               ELLAFLLDGLHEDLN+VK+KPY ++KDA GRPDEEVADEYW NH+ARNDS+IVD C
Sbjct: 337 HDSQELLAFLLDGLHEDLNQVKYKPYEEAKDASGRPDEEVADEYWRNHLARNDSVIVDTC 396

Query: 378 QGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPK 437
            GQYKSTL CP C+K SVTFDPFMYLSLP+ +   RTMTVTVF++DGS  P +Y V+VPK
Sbjct: 397 HGQYKSTLTCPTCSKTSVTFDPFMYLSLPVPSMAKRTMTVTVFSTDGSREPFSYDVSVPK 456

Query: 438 HGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPK 497
            G   DL+Q L   CSL   E L + E+ N+ I R+L++P  S+S ++D D LAAYR+PK
Sbjct: 457 FGTLSDLVQALSAACSLGGDESLLITEVYNNCIIRYLEEPSDSVSLLRDGDKLAAYRLPK 516

Query: 498 LVKKAVFLQLIHRLQEQEPGAAQ-TTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLS 556
             +K+  +   H+   +  G     T Q K +  PL++ +   + ++   +Q    ++L+
Sbjct: 517 QYEKSPLVVFTHKHFAEHSGVDNFVTPQMKDFEAPLLAPLP--EPVNGLTLQEIYLKLLN 574

Query: 557 PF-LKKESLMHADSFDPSS--MVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQL 613
           PF   K   +  D    SS   V  +D +G+   N           +  +  L + P + 
Sbjct: 575 PFRFSKTISLSTDCGRGSSDCAVYLMDAAGDCAVNLMDVTPSSSDGNVHSAQLEDGPERN 634

Query: 614 VDESNVC---------------------------FDLSVEGDKTIR----------IPSS 636
               N C                           F L+ E D   R          + ++
Sbjct: 635 QCNDNSCEVMEGSSEAYCGETDVFDKEAQTEQFGFYLTNERDDVQRTRIEMNDLDLLDTT 694

Query: 637 STSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLV 696
            + + V V+W     ++Y+   L NL E+ K   V  K   + ++L  CLEAFL+EEPL 
Sbjct: 695 PSRLHVSVNWQHSASKQYDISMLNNLPEIHK-LEVILKGTEDSVALQGCLEAFLKEEPLG 753

Query: 697 PEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLT 756
           PEDMWYCP CK+ +QA KKLDLWRLPEVLVIHLKRFSY++  ++KLETFV+FPI D +L+
Sbjct: 754 PEDMWYCPCCKKHQQAMKKLDLWRLPEVLVIHLKRFSYTQFTRNKLETFVDFPISDLDLS 813

Query: 757 KYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVK 816
            Y+A +N    + Y LYA++NHYG MG GHYTA I   +   W+ FDD  ++PI+ED++K
Sbjct: 814 SYIATENEQPNKHYRLYAISNHYGNMGGGHYTASI-CQEGKGWHKFDDECVTPISEDNIK 872

Query: 817 SAAAYVLFYRR 827
           +AAAYVLFYRR
Sbjct: 873 TAAAYVLFYRR 883


>gi|110741704|dbj|BAE98798.1| ubiquitin-specific protease 8 [Arabidopsis thaliana]
          Length = 582

 Score =  507 bits (1305), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 267/588 (45%), Positives = 365/588 (62%), Gaps = 56/588 (9%)

Query: 287 MNSAIQCLVHTPEFARYFREDYRREINWQNPLGMV------------------------- 321
           MNS++QCL HTP+   +F  +Y +EIN  NPLGM                          
Sbjct: 1   MNSSLQCLAHTPKLVDFFLGEYSKEINLDNPLGMKGEIALAFGDLLRSLWAPGASTVAPR 60

Query: 322 ----------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVAD 359
                                 ELLAFLLDGLHEDLNRVK+KPY+++KD DGRPD EVAD
Sbjct: 61  TFKAKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKNKPYVEAKDGDGRPDAEVAD 120

Query: 360 EYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTV 419
           EYW NH+ARNDSIIVDVCQGQYKSTLVCP+C KVSV FDPFMYLSLPL  T+ RTM +TV
Sbjct: 121 EYWRNHVARNDSIIVDVCQGQYKSTLVCPICKKVSVMFDPFMYLSLPLPCTSMRTMDLTV 180

Query: 420 FTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLI 479
            ++DGS+LP   TV VPK G+  DL + L   CSL + E L V E+ N+ I RFL++P  
Sbjct: 181 MSADGSSLPIPLTVNVPKFGKFEDLHKALVTACSLPEEETLLVTEVYNNRIIRFLEEPTD 240

Query: 480 SLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRD 539
           SL+ I+D D L  YR+ K    +  +  +H+  E++  + +++  WKA+G PLVS +   
Sbjct: 241 SLTLIRDGDKLVVYRLKKDANNSPLIVYMHQKLEEQFISGKSSPTWKAFGIPLVSRLC-- 298

Query: 540 DVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDAS 599
           DV +   +++   ++LS F         +  +P+    T     +  ++     + +   
Sbjct: 299 DVENGSDVENLYLKLLSSFKMPTEFFTENLKNPTEEEATDKTDTDGTTSVEDTNSTDVKE 358

Query: 600 SSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFL 659
           +++++  P L L L D+     +  +  +K +   + S  + V   W  K L+ Y+T  L
Sbjct: 359 TTESLPDPVLRLYLTDDRGNSIEAEMLKEKPV---NKSKRLNVLARWPVKELDVYDTCLL 415

Query: 660 ENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLW 719
            +L EV K+G  TK+ + E +SL+ CLEAFL EEPL P+DMWYCP CKE RQA KKLDLW
Sbjct: 416 SSLPEVSKSG--TKRPQ-ESVSLFKCLEAFLTEEPLGPDDMWYCPGCKEHRQAIKKLDLW 472

Query: 720 RLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHY 779
           RLPE+LVIHLKRFSYSR MK+KLE +V+FP+ + +L+ Y++ KN      Y LYA++NHY
Sbjct: 473 RLPEILVIHLKRFSYSRFMKNKLEAYVDFPLDNLDLSSYISYKNGQTTYRYMLYAISNHY 532

Query: 780 GGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           G MG GHYTA++     +RWY+FDDSH+  I+++ +K++AAYVLFY+R
Sbjct: 533 GSMGGGHYTAYVH-HGGDRWYDFDDSHVHQISQEKIKTSAAYVLFYKR 579


>gi|297606766|ref|NP_001058936.2| Os07g0160000 [Oryza sativa Japonica Group]
 gi|255677531|dbj|BAF20850.2| Os07g0160000 [Oryza sativa Japonica Group]
          Length = 911

 Score =  507 bits (1305), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 310/809 (38%), Positives = 438/809 (54%), Gaps = 120/809 (14%)

Query: 91  TLARKVISSGL----SQTELAVEVYPLRLQLLVMPRGECSTIRISKKETIGELHRRACSI 146
            LAR+  S  L    S  E +   YPL L++ V       T++ISKK+   E ++RA  I
Sbjct: 112 VLARQNSSLALHNKHSFAEDSAGAYPLVLRISVR-ETSILTVKISKKDNPVENYKRAYKI 170

Query: 147 FYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDN 206
           F ++ + + +WD+ G     LMN+ +R+  D                     C S +++ 
Sbjct: 171 FNIDSQPVHVWDFSGQTNLILMNEWNRSNHDC--------------------CHSELEN- 209

Query: 207 GFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGV 266
                    V V     SL+   G     GTS+ ++ + S   N     D D + GS G 
Sbjct: 210 ------ILEVQVYAMSDSLTSKIG-----GTSKEYTEQSSADVN---DMDVDLSYGSFG- 254

Query: 267 TTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDYRREINWQNPLGM------ 320
             R +S GL GL NLGNTCFMNS+IQCL HT +   YF  DY R+IN  NPLG+      
Sbjct: 255 --RSSSHGLIGLENLGNTCFMNSSIQCLAHTSKLVDYFLGDYDRDINRTNPLGLNGELAL 312

Query: 321 -----------------------------------------VELLAFLLDGLHEDLNRVK 339
                                                     ELLAFLLDGLHEDLN+VK
Sbjct: 313 AFGELLRRLWNTERKPVSPHHFKAKIACFAPQFSGFNQHDSQELLAFLLDGLHEDLNQVK 372

Query: 340 HKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDP 399
            KPY ++KDA GRPD+EVADEYW+NH+ARNDS+IVD   GQYKSTL CP C+K SVTFDP
Sbjct: 373 CKPYEEAKDASGRPDKEVADEYWSNHLARNDSVIVDTYHGQYKSTLTCPTCSKTSVTFDP 432

Query: 400 FMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEE 459
           FMYLSLP+ +T  RTMTVTVF++DGS  P +Y VTVP+ G   DL+Q L + CSL   E 
Sbjct: 433 FMYLSLPVPSTAKRTMTVTVFSTDGSIEPISYDVTVPQFGSLNDLVQALSSACSLGDDEI 492

Query: 460 LKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAA 519
           L + E+ N+ I R+L++P  S+S ++D D LAA+R+P+  +K+  +   H+  ++     
Sbjct: 493 LLITEVYNNRILRYLEEPSDSVSLLRDGDKLAAFRLPRKYEKSPVVVFTHQYFDERSSID 552

Query: 520 QTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSP--FLKK-ESLMHADSFDPSSMV 576
             T Q K +  PL++ +   +  +   +++   ++L P  F K   SL  +   +     
Sbjct: 553 NITPQMKEFEAPLLAVLP--ERANGLTLKNIYLKLLEPLRFSKSTSSLNDSGRCNSGCAA 610

Query: 577 TTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVC---------------- 620
             +D + ++ S   S  ++    SS++ T+     +   ESN+                 
Sbjct: 611 VMMDATPDSDSKFQSAPSENAPESSQSETIECQMTEGPSESNIGDTTDSDREAHMEEFEF 670

Query: 621 --------FDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVT 672
                   F  +      + + ++   +++ V W Q  + +Y+T  L++L E+ K   + 
Sbjct: 671 YLINGRGEFQQTRIQTDEVDLQTTPNRLLINVHWQQNAVGQYDTSMLKSLPEIHK-LELI 729

Query: 673 KKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF 732
            K   + ++L+ CLEAFL+EEPL PEDMWYCP CK+ +QA KKLDLWRLPEVLVIHLKRF
Sbjct: 730 PKGNEDSVALHGCLEAFLKEEPLGPEDMWYCPCCKKHQQAMKKLDLWRLPEVLVIHLKRF 789

Query: 733 SYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIK 792
           SY++  ++KLETFV+FPI D +L+ Y+ +K+      Y LYA++NHYG MG GHYTA I 
Sbjct: 790 SYTQFTRNKLETFVDFPISDLDLSSYIIDKSELSDCHYRLYAISNHYGNMGGGHYTASIY 849

Query: 793 LLDENRWYNFDDSHISPINEDDVKSAAAY 821
             +   WY FDD  + PI ED +K+ AAY
Sbjct: 850 HEEGKGWYKFDDECVRPITEDSIKTPAAY 878


>gi|449437492|ref|XP_004136526.1| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal
           hydrolase 8-like [Cucumis sativus]
          Length = 602

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 268/606 (44%), Positives = 368/606 (60%), Gaps = 59/606 (9%)

Query: 273 VGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDYRREINWQNPLGMV----------- 321
           +GLTGL NLGNTCFMNSA+QCLVHTP+   YF  ++++EIN+ NPLGM            
Sbjct: 1   MGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGNFQKEINYDNPLGMKGELALAFGDLL 60

Query: 322 ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E L+FLLDGLHEDLNRVK KPY +
Sbjct: 61  RKLWAPGSKSVPPRMFKLKLANFAPQFSGYNQHDSQEFLSFLLDGLHEDLNRVKCKPYFE 120

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           +KD +GR DEEVA+EYW NH+ARNDSIIVD+CQGQY+STLVCP CNK+SVTFDPFMYLSL
Sbjct: 121 AKDVEGRRDEEVAEEYWQNHLARNDSIIVDLCQGQYRSTLVCPACNKLSVTFDPFMYLSL 180

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
           PL +TT R+MT+ V + DG +LPST+TV+VPK GR +DLI  L   CSL+  E L +AE+
Sbjct: 181 PLPSTTMRSMTLMVISCDGISLPSTFTVSVPKSGRLKDLIDALSTACSLRADETLLLAEV 240

Query: 466 QNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQW 525
             + I R L+DP  SL+ I+++D L AYR P+  + +  +  +H+  E    + +  S  
Sbjct: 241 YKNRICRVLEDPSDSLALIRNEDKLVAYRFPRDEESSKLIVYMHQQSETHDNSGKLISGS 300

Query: 526 KAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEA 585
           K +G P V+ +   D+     I+    + L P LK  +     + D  + V+  D     
Sbjct: 301 KTFGAPFVAKVP--DLPHESDIRQLFLKFLDP-LKMPAEESFSNCDGEAGVSANDDFEMD 357

Query: 586 HSNSSSNIAKEDASSSKAVTLPNLP----LQLVDESNVCFDLSVEGDKTIRIPSSSTSIV 641
            ++  +N+  + + + + +    LP      L  +        ++ ++ + I  S+  + 
Sbjct: 358 DASDPANLDPDGSPNDETIVNSCLPADFTFYLAHQMGASEGTLIKPNEPLAISKSTERLD 417

Query: 642 VYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMW 701
           V V W   ++ KY+T  + +L +V K   +  +   E + LY CLEAFL+EEPL P+DMW
Sbjct: 418 VIVMWPDTMVNKYDTCLMSSLPDVSKPN-LHPRRLQESVDLYKCLEAFLKEEPLGPDDMW 476

Query: 702 YCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVAN 761
           YCP+CK+ +QA KKLDLWRLPE+LVIHLKRFSYSR  K+KLETFV+FPI D     YV+ 
Sbjct: 477 YCPRCKKPQQARKKLDLWRLPEILVIHLKRFSYSRFFKNKLETFVDFPIDDVINGLYVSQ 536

Query: 762 KNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAY 821
             S   Q++ L+       GMG+GHYTA++  L   +WY+FDD  + P++ED VKS+AAY
Sbjct: 537 LKS--MQIFYLFXTKFPLEGMGAGHYTAYV--LHGGKWYDFDDDRVIPVSEDVVKSSAAY 592

Query: 822 VLFYRR 827
           VLFY+R
Sbjct: 593 VLFYKR 598


>gi|302756229|ref|XP_002961538.1| hypothetical protein SELMODRAFT_61965 [Selaginella moellendorffii]
 gi|300170197|gb|EFJ36798.1| hypothetical protein SELMODRAFT_61965 [Selaginella moellendorffii]
          Length = 567

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 288/613 (46%), Positives = 367/613 (59%), Gaps = 102/613 (16%)

Query: 271 ASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDYRREINWQNPLGM---------- 320
            S GL GL NLGNTCFMNSA+QCL HTPE   YF +DY  EIN  NPLGM          
Sbjct: 1   GSRGLAGLQNLGNTCFMNSALQCLAHTPELVEYFLQDYDDEINPANPLGMEGELAVAFGE 60

Query: 321 ------------------------------------VELLAFLLDGLHEDLNRVKHKPYI 344
                                                ELLAFLLDGLHEDLNRVK KPYI
Sbjct: 61  LIRKLWAGREVVVPRPFKNKLSRFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKSKPYI 120

Query: 345 KSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLS 404
           + KD DGRPD EVADEYWA H ARN+SIIVD+ QGQYKSTLVCPVC KVSVTFDPFMYLS
Sbjct: 121 EVKDIDGRPDGEVADEYWAIHKARNNSIIVDLFQGQYKSTLVCPVCAKVSVTFDPFMYLS 180

Query: 405 LPL-QATTTRTMTVTVFTSDGSALPSTYTVTVP--KHGRCRDLIQVLGNICSLKQSEELK 461
           LPL +     ++ VTVF+ DGSA P  +TV +P  K  R +DLI  L   C+L+++E L 
Sbjct: 181 LPLPEKQQLMSVAVTVFSGDGSASPEVHTVQIPGPKQARPKDLIHALSVACTLEENEYLF 240

Query: 462 VAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQ----EPG 517
           V E+ N+ I R + +   +  ++ + D LAA+R+     K   L L H   E+    E  
Sbjct: 241 VVEVYNNRIYRVISECPSAPLSLANGDRLAAFRLKSFPGKTTKLILYHGTLEEHVTYEFS 300

Query: 518 AAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFD-PSSMV 576
                 Q+K YG+PLV++I    +    ++ + V +++SP LK+E+ +++   D P  + 
Sbjct: 301 CRTIGKQFKLYGSPLVTAIPEAGLSEGAELYNLVAKVVSP-LKREAEVNSSPEDWPFRLF 359

Query: 577 TTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSS 636
            T D                 AS+   +  P++PL         F+ S    + +     
Sbjct: 360 ITDD----------------KASTVDLLIDPHMPLP-------TFNFSPREHRYL----- 391

Query: 637 STSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVT--KKARTEPLSLYTCLEAFLREEP 694
              I+V   WS    ++Y    LENL       PVT     R EP+SLY CLEAF+REEP
Sbjct: 392 ---ILV---WSPSAKDQYGFKELENL------APVTIPDSRRREPISLYACLEAFMREEP 439

Query: 695 LVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFN 754
           L P+DMW+CP+CKE RQASKKLDLWRLPE+LV+HLKRFSYSR   +KLET V+FP+HD +
Sbjct: 440 LGPDDMWFCPKCKEHRQASKKLDLWRLPEILVVHLKRFSYSR-YSNKLETLVDFPVHDLD 498

Query: 755 LTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDD 814
           L+KYV    S R   YEL+A++NHYGG+G GHYTA+ KL +EN+WYNFDDS ++P++ D 
Sbjct: 499 LSKYV----SHRTDPYELFAVSNHYGGVGGGHYTAYAKLCNENKWYNFDDSCVNPMSPDS 554

Query: 815 VKSAAAYVLFYRR 827
           +K+ AAYVLFYRR
Sbjct: 555 IKTTAAYVLFYRR 567


>gi|22831079|dbj|BAC15941.1| putative ubiquitin C-terminal hydrolase [Oryza sativa Japonica
           Group]
          Length = 951

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 302/792 (38%), Positives = 427/792 (53%), Gaps = 120/792 (15%)

Query: 91  TLARKVISSGL----SQTELAVEVYPLRLQLLVMPRGECSTIRISKKETIGELHRRACSI 146
            LAR+  S  L    S  E +   YPL L++ V       T++ISKK+   E ++RA  I
Sbjct: 112 VLARQNSSLALHNKHSFAEDSAGAYPLVLRISVR-ETSILTVKISKKDNPVENYKRAYKI 170

Query: 147 FYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDN 206
           F ++ + + +WD+ G     LMN+ +R+  D                     C S +++ 
Sbjct: 171 FNIDSQPVHVWDFSGQTNLILMNEWNRSNHDC--------------------CHSELEN- 209

Query: 207 GFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGV 266
                    V V     SL+   G     GTS+ ++ + S   N     D D + GS G 
Sbjct: 210 ------ILEVQVYAMSDSLTSKIG-----GTSKEYTEQSSADVN---DMDVDLSYGSFG- 254

Query: 267 TTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDYRREINWQNPLGM------ 320
             R +S GL GL NLGNTCFMNS+IQCL HT +   YF  DY R+IN  NPLG+      
Sbjct: 255 --RSSSHGLIGLENLGNTCFMNSSIQCLAHTSKLVDYFLGDYDRDINRTNPLGLNGELAL 312

Query: 321 -----------------------------------------VELLAFLLDGLHEDLNRVK 339
                                                     ELLAFLLDGLHEDLN+VK
Sbjct: 313 AFGELLRRLWNTERKPVSPHHFKAKIACFAPQFSGFNQHDSQELLAFLLDGLHEDLNQVK 372

Query: 340 HKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDP 399
            KPY ++KDA GRPD+EVADEYW+NH+ARNDS+IVD   GQYKSTL CP C+K SVTFDP
Sbjct: 373 CKPYEEAKDASGRPDKEVADEYWSNHLARNDSVIVDTYHGQYKSTLTCPTCSKTSVTFDP 432

Query: 400 FMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEE 459
           FMYLSLP+ +T  RTMTVTVF++DGS  P +Y VTVP+ G   DL+Q L + CSL   E 
Sbjct: 433 FMYLSLPVPSTAKRTMTVTVFSTDGSIEPISYDVTVPQFGSLNDLVQALSSACSLGDDEI 492

Query: 460 LKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAA 519
           L + E+ N+ I R+L++P  S+S ++D D LAA+R+P+  +K+  +   H+  ++     
Sbjct: 493 LLITEVYNNRILRYLEEPSDSVSLLRDGDKLAAFRLPRKYEKSPVVVFTHQYFDERSSID 552

Query: 520 QTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSP--FLKK-ESLMHADSFDPSSMV 576
             T Q K +  PL++ +   +  +   +++   ++L P  F K   SL  +   +     
Sbjct: 553 NITPQMKEFEAPLLAVLP--ERANGLTLKNIYLKLLEPLRFSKSTSSLNDSGRCNSGCAA 610

Query: 577 TTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVC---------------- 620
             +D + ++ S   S  ++    SS++ T+     +   ESN+                 
Sbjct: 611 VMMDATPDSDSKFQSAPSENAPESSQSETIECQMTEGPSESNIGDTTDSDREAHMEEFEF 670

Query: 621 --------FDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVT 672
                   F  +      + + ++   +++ V W Q  + +Y+T  L++L E+ K   + 
Sbjct: 671 YLINGRGEFQQTRIQTDEVDLQTTPNRLLINVHWQQNAVGQYDTSMLKSLPEIHK-LELI 729

Query: 673 KKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF 732
            K   + ++L+ CLEAFL+EEPL PEDMWYCP CK+ +QA KKLDLWRLPEVLVIHLKRF
Sbjct: 730 PKGNEDSVALHGCLEAFLKEEPLGPEDMWYCPCCKKHQQAMKKLDLWRLPEVLVIHLKRF 789

Query: 733 SYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIK 792
           SY++  ++KLETFV+FPI D +L+ Y+ +K+      Y LYA++NHYG MG GHYTA I 
Sbjct: 790 SYTQFTRNKLETFVDFPISDLDLSSYIIDKSELSDCHYRLYAISNHYGNMGGGHYTASIY 849

Query: 793 LLDENRWYNFDD 804
             +   WY FDD
Sbjct: 850 HEEGKGWYKFDD 861


>gi|302775718|ref|XP_002971276.1| hypothetical protein SELMODRAFT_61966 [Selaginella moellendorffii]
 gi|300161258|gb|EFJ27874.1| hypothetical protein SELMODRAFT_61966 [Selaginella moellendorffii]
          Length = 567

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 287/613 (46%), Positives = 367/613 (59%), Gaps = 102/613 (16%)

Query: 271 ASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDYRREINWQNPLGM---------- 320
            S GL GL NLGNTCFMNSA+QCL HTPE   YF +DY  EIN  NPLGM          
Sbjct: 1   GSRGLAGLQNLGNTCFMNSALQCLAHTPELVEYFLQDYDDEINPANPLGMEGELAVAFGE 60

Query: 321 ------------------------------------VELLAFLLDGLHEDLNRVKHKPYI 344
                                                ELLAFLLDGLHEDLNRVK KPYI
Sbjct: 61  LIRKLWAGREVVVPRPFKNKLSRFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKSKPYI 120

Query: 345 KSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLS 404
           + KD DGRPD EVADEYWA H ARN+SIIVD+ QGQYKSTLVCPVC KVSVTFDPFMYLS
Sbjct: 121 EVKDIDGRPDGEVADEYWAIHKARNNSIIVDLFQGQYKSTLVCPVCAKVSVTFDPFMYLS 180

Query: 405 LPL-QATTTRTMTVTVFTSDGSALPSTYTVTVP--KHGRCRDLIQVLGNICSLKQSEELK 461
           LPL +     ++ VTVF+ DGSA P  +TV +P  K  R +DLI  L   C+L+++E L 
Sbjct: 181 LPLPEKQQLMSVAVTVFSGDGSASPEVHTVQIPGPKQARPKDLIHALSVACTLEENEYLF 240

Query: 462 VAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQ----EPG 517
           V E+ N+ I R + +   +  ++ + D LAA+R+     K   L L H   E+    E  
Sbjct: 241 VVEVYNNRIYRVISECPSAPLSLANGDRLAAFRLKSFPGKTTKLILYHGTLEEHVTYEFS 300

Query: 518 AAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFD-PSSMV 576
                 Q+K YG+PLV++I    +    ++ + V +++SP L++E+ +++   D P  + 
Sbjct: 301 CRTIGKQFKLYGSPLVTAIPEAGLSEGAELYNLVAKVVSP-LRREAEVNSSPEDWPFRLF 359

Query: 577 TTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSS 636
            T D                 AS+   +  P++PL         F+ S    + +     
Sbjct: 360 ITDD----------------KASTVDLLIDPHMPLP-------TFNFSPREHRYL----- 391

Query: 637 STSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVT--KKARTEPLSLYTCLEAFLREEP 694
              I+V   WS    ++Y    LENL       PVT     R EP+SLY CLEAF+REEP
Sbjct: 392 ---ILV---WSPSAKDQYGFKELENL------APVTIPDSRRREPISLYACLEAFMREEP 439

Query: 695 LVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFN 754
           L P+DMW+CP+CKE RQASKKLDLWRLPE+LV+HLKRFSYSR   +KLET V+FP+HD +
Sbjct: 440 LGPDDMWFCPKCKEHRQASKKLDLWRLPEILVVHLKRFSYSR-YSNKLETLVDFPVHDLD 498

Query: 755 LTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDD 814
           L+KYV    S R   YEL+A++NHYGG+G GHYTA+ KL +EN+WYNFDDS ++P++ D 
Sbjct: 499 LSKYV----SHRTDPYELFAVSNHYGGVGGGHYTAYAKLCNENKWYNFDDSCVNPMSPDS 554

Query: 815 VKSAAAYVLFYRR 827
           +K+ AAYVLFYRR
Sbjct: 555 IKTTAAYVLFYRR 567


>gi|255566191|ref|XP_002524083.1| Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
 gi|223536651|gb|EEF38293.1| Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
          Length = 506

 Score =  484 bits (1245), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 260/516 (50%), Positives = 345/516 (66%), Gaps = 20/516 (3%)

Query: 320 MVELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQG 379
           M E LAFLLDGLHEDLNRVK KPY ++KD D  PD EVAD+YW NH+ARNDSIIVD+CQG
Sbjct: 1   MQEFLAFLLDGLHEDLNRVKCKPYTEAKDTDDHPDNEVADDYWQNHLARNDSIIVDLCQG 60

Query: 380 QYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHG 439
           QY+STLVCP+C K SVTFDPFMYLSLPL +TT RTMT+T+ ++DGS LPS  TVTVPK G
Sbjct: 61  QYRSTLVCPMCKKKSVTFDPFMYLSLPLPSTTMRTMTLTLLSTDGSTLPSPITVTVPKCG 120

Query: 440 RCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLV 499
           R +DL+  L + C L+  E L VAEI  + I RFL++P  SL+ I+DDD L AYR+PK  
Sbjct: 121 RLKDLLDALSSECPLRNDETLLVAEIYRNKIFRFLEEPSDSLALIRDDDKLVAYRLPKDN 180

Query: 500 KKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFL 559
           + ++ +  +H L ++  G       WK +G PLV+  S  D+ +  K++    ++L+PFL
Sbjct: 181 EASLLVVFLHELLDKPSGLESAAPNWKLFGIPLVARFS--DLCNGSKLRKQYLKVLNPFL 238

Query: 560 --------KKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPL 611
                        +   + D S+M     P+   ++  S     +D+  S          
Sbjct: 239 MPADDDILNDYDDLGITANDDSAMADIPSPTVSENNAGSDGETDDDSLFSSEFQ------ 292

Query: 612 QLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPV 671
             ++ +N+     ++  K   IP  +    VYV WS+K++EKY+T  L +L EVFK    
Sbjct: 293 --INMTNLGESAEIQMSKPSPIPKFNKRFEVYVSWSKKMIEKYDTCILSSLPEVFKPQLY 350

Query: 672 TKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKR 731
           T++ + E +SLY CLEAFL+EEPL PEDMW+CP CK+ RQASKKLDLWRLPE+LV+HLKR
Sbjct: 351 TRRPQ-ESVSLYKCLEAFLKEEPLGPEDMWFCPACKKHRQASKKLDLWRLPEILVVHLKR 409

Query: 732 FSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHI 791
           FSYSR +K+KLET V+FP+ DF+L+ Y++ K+      YELYA++NHYGGMG GHYTA +
Sbjct: 410 FSYSRVIKNKLETHVDFPVEDFDLSTYISRKDGQFSYRYELYAISNHYGGMGGGHYTAFV 469

Query: 792 KLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
                 RWY FDD ++SP+NE  + ++AAYVLFYRR
Sbjct: 470 D-HGHGRWYEFDDDNVSPVNEGRIITSAAYVLFYRR 504


>gi|218184165|gb|EEC66592.1| hypothetical protein OsI_32808 [Oryza sativa Indica Group]
          Length = 788

 Score =  484 bits (1245), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 307/763 (40%), Positives = 423/763 (55%), Gaps = 94/763 (12%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           WW +W  YV   +P+   D   L          A  RP  IDNS LV++ ++   G  PE
Sbjct: 51  WWLNWQSYVGLIKPDEN-DADML--------PQAPSRPGEIDNSKLVSEESSS-IGDEPE 100

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVM 120
           +  TL EG DY L+PQEVW +LH WY GGP L+R+VI S  +     V+VYPLRL+L   
Sbjct: 101 LQRTLREGDDYALVPQEVWRKLHEWYKGGPELSRRVICSSPTSRSYIVDVYPLRLKLFDG 160

Query: 121 PRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANI 180
                  IRIS+K  + EL+   CS+  +   +I IWD+Y   K   + +++ T+++A +
Sbjct: 161 RDSLERIIRISRKAKVSELYSLVCSLLSVEQSKIDIWDFYQKTKGKKLINLNETVEEAQL 220

Query: 181 QMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRN 240
            MDQ+I++E   +    +   +  +N  A      + +EPS SS SIAGG + S G S  
Sbjct: 221 MMDQEIIIEAKADDAWCSDLGTRSNNELA-----LIPLEPSTSSFSIAGGPAFSNGFSSG 275

Query: 241 HS----SEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVH 296
                  + S SP L  A D  +   S+G  T+    GL+GL NLGNTCFMNSAIQ LVH
Sbjct: 276 FGSSFSQDNSFSPLLRDAEDGYSF--SNG--TKDDIHGLSGLHNLGNTCFMNSAIQSLVH 331

Query: 297 TPEFARYFREDYRREINWQNPLGMV----------------------------------- 321
           TP    YF +DY REIN +NPLG+                                    
Sbjct: 332 TPPLVEYFLQDYSREINTENPLGLQGELATAFGELLRKLWSAGRTSIAPRPFKTKLSRFA 391

Query: 322 ------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARN 369
                       ELLAFLLDGLHEDLNRVK KPYI++KDADGRPDEE+A+E W  H ARN
Sbjct: 392 PQFSGYNQHDSQELLAFLLDGLHEDLNRVKKKPYIEAKDADGRPDEELAEECWNYHKARN 451

Query: 370 DSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPS 429
           DSIIVD  QGQYKSTLVCP C K+SVTFDPFMYLSLPL +T TR + VTVF+  G ALP 
Sbjct: 452 DSIIVDKFQGQYKSTLVCPDCKKISVTFDPFMYLSLPLPSTVTRMINVTVFSGTGDALPM 511

Query: 430 TYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDH 489
            YTV V K+G C DLI+ L  +C L+  E L +AE+ +H I R+  +P   L  +KD+D 
Sbjct: 512 PYTVKVQKNGVCGDLIKSLSVMCCLQSCETLLLAEVYDHRIYRYW-NPSEPLCHVKDEDK 570

Query: 490 LAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQS 549
           L AYR+P   +  + ++++HR+ ++    +      K  G+PLV+ I  D       I +
Sbjct: 571 LVAYRLPVGSENLLRVEILHRVVDRYTSESMFNLSRKLIGSPLVTCIPSDST-RKADIYA 629

Query: 550 TVQRMLSPFLKK------ESLMHADSFDPS--SMVTTVDPSGEAHSNSSSNIAKEDASSS 601
           TV  +L+PF++       ES    +S  PS   +V T +        S+SN+ +E A   
Sbjct: 630 TVSSLLAPFVRAKVHTLDESATKLNSNGPSLDGIVLTDNGVTCVEDVSTSNVDEEAADEE 689

Query: 602 KAVTLPNLPLQLV---DESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHF 658
                  LP QL    D++N    +  + +    +P S+  ++  +DWS +  E Y+  +
Sbjct: 690 V------LPFQLWLTDDKANKREHIDADSNG---VPGSTMRLL--MDWSDREHEVYDIKY 738

Query: 659 LENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMW 701
           ++ L  VFK G ++KK R E ++L++CL+AFL++EPL P+DMW
Sbjct: 739 MDELSVVFKPGFMSKKNRQEAVNLFSCLDAFLKDEPLGPDDMW 781


>gi|302768559|ref|XP_002967699.1| hypothetical protein SELMODRAFT_145115 [Selaginella moellendorffii]
 gi|300164437|gb|EFJ31046.1| hypothetical protein SELMODRAFT_145115 [Selaginella moellendorffii]
          Length = 564

 Score =  477 bits (1228), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 281/590 (47%), Positives = 363/590 (61%), Gaps = 92/590 (15%)

Query: 287 MNSAIQCLVHTPEFARYFREDYRREINWQNPLGMV------------------------- 321
           MNSA+QCLVHTP+   +F +DY +EIN  N +G                           
Sbjct: 1   MNSALQCLVHTPQLTTFFLQDYSKEINRDNMMGTKGELAVAFGELLRKVWSPKSSPYSPR 60

Query: 322 ----------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVAD 359
                                 ELLA+LLDGLHEDLNR+K KPYI+ KD DGRPDEEVAD
Sbjct: 61  SFKMKLSRFAPQFSGFNQHDSQELLAYLLDGLHEDLNRLKTKPYIEVKDEDGRPDEEVAD 120

Query: 360 EYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTV 419
           EYW  H ARNDS+IVDV QGQYKSTLVCPVC+KVSVTFDPFMYLSLPL  T TRTMTVTV
Sbjct: 121 EYWEAHRARNDSVIVDVFQGQYKSTLVCPVCSKVSVTFDPFMYLSLPL-PTNTRTMTVTV 179

Query: 420 FTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLI 479
            +SDGS+ P  + V VP+ G+CR+L + +GN C L   E L++ ++++   Q  L+D L 
Sbjct: 180 ISSDGSSPPKAHAVVVPRQGKCRELAKAVGNSCGLSTDEMLQLFQLKS---QHLLEDTL- 235

Query: 480 SLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQ-EPGAAQTTSQWKAYGTPLVSSISR 538
            LSTI D D L AYR+PKL + A F+  I   QEQ E G          +  P +  I  
Sbjct: 236 GLSTIPDTDQLVAYRLPKLSESAQFVAFI---QEQLEDGRKDR------FRVPFIIPIPP 286

Query: 539 DDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDA 598
           +   +   I+   +++LS       +  +D  D             A S+   ++   D 
Sbjct: 287 EGFRTGEDIKRAFEKLLSQMKTDSEMFDSDMLD------------RASSDCPFSLWTTDE 334

Query: 599 SSSKAVTLPNLPLQLVDESNVCFDLSVEGD-KTIRIPSSSTSIVVYVDWSQKLLEKYNTH 657
            ++K+         L++     FD  +  D    RI +  T   V+V+WS ++ E Y+  
Sbjct: 335 RATKS--------HLIE-----FDKPIPSDLYPARINTKYT--YVFVEWSDRVSEFYDLS 379

Query: 658 FLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLD 717
           FL+ L +V K    +KK R E +SLYTCLEAFL+EEPL P DMWYCP+CK+R+QASKKLD
Sbjct: 380 FLDRLPDVCKAA-TSKKLRQEAVSLYTCLEAFLKEEPLGPHDMWYCPRCKQRQQASKKLD 438

Query: 718 LWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTN 777
           LWRLPE+LV+HLKRFSY R  ++KLETFVNFPIHD +LTKY+A+++  ++  YELYA++N
Sbjct: 439 LWRLPEILVVHLKRFSYVR-YQNKLETFVNFPIHDLDLTKYLAHRSVPQQHEYELYAVSN 497

Query: 778 HYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           HYGG G GHYTA + L  + +WYNFDDSH++P +ED +KS AAYVLFYRR
Sbjct: 498 HYGGTGGGHYTAFVNLDLDGQWYNFDDSHVTPASEDHLKSPAAYVLFYRR 547


>gi|302761826|ref|XP_002964335.1| hypothetical protein SELMODRAFT_166455 [Selaginella moellendorffii]
 gi|300168064|gb|EFJ34668.1| hypothetical protein SELMODRAFT_166455 [Selaginella moellendorffii]
          Length = 562

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 279/589 (47%), Positives = 365/589 (61%), Gaps = 92/589 (15%)

Query: 287 MNSAIQCLVHTPEFARYFREDYRREINWQNPLGMV------------------------- 321
           MNSA+QCLVHTP+   +F +DY +EIN  N +G                           
Sbjct: 1   MNSALQCLVHTPQLTTFFLQDYSKEINRDNMMGTKGELAVAFGELLRKVWSPKSSPYSPR 60

Query: 322 ----------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVAD 359
                                 ELLA+LLDGLHEDLNR+K KPYI+ KD DGRPDEEVAD
Sbjct: 61  SFKMKLSRFAPQFSGFNQHDSQELLAYLLDGLHEDLNRLKTKPYIEVKDEDGRPDEEVAD 120

Query: 360 EYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTV 419
           EYW  H ARNDS+IVDV QGQYKSTLVCPVC+KVSVTFDPFMYLSLPL  T TRTMTVTV
Sbjct: 121 EYWEAHRARNDSVIVDVFQGQYKSTLVCPVCSKVSVTFDPFMYLSLPL-PTNTRTMTVTV 179

Query: 420 FTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLI 479
            +SDGS+ P  + V VP+ G+CR+L + +GN C L   E L++ ++++   Q  L+D L 
Sbjct: 180 ISSDGSSPPKAHAVVVPRQGKCRELAKAVGNSCGLSTDEMLQLFQLKS---QHLLEDTL- 235

Query: 480 SLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRD 539
            LSTI D D L AYR+P+L + A F+  I    E++            +  P +  I  +
Sbjct: 236 GLSTIPDTDQLVAYRLPRLSESAQFVAFIQEQLEEK----------DRFRVPFIIPIPPE 285

Query: 540 DVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDAS 599
              +   I+   +++LS  +K +S M    FD        D    A S+   ++   D  
Sbjct: 286 GFRTGEDIKCAFEKLLSQ-MKTDSEM----FD-------SDMQDRASSDCPFSLWTTDER 333

Query: 600 SSKAVTLPNLPLQLVDESNVCFDLSVEGD-KTIRIPSSSTSIVVYVDWSQKLLEKYNTHF 658
           ++K+         L++     FD  +  D    RI +  T ++  V+WS ++ E Y+  F
Sbjct: 334 ATKS--------HLIE-----FDKPIPSDLYPARINTKYTYVL--VEWSDRVSEFYDLSF 378

Query: 659 LENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDL 718
           L+ L +V K    +KK R E +SLYTCLEAFL+EEPL P DMWYCP+CK+R+QASKKLDL
Sbjct: 379 LDRLPDVCKAA-TSKKLRQEAVSLYTCLEAFLKEEPLGPHDMWYCPRCKQRQQASKKLDL 437

Query: 719 WRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNH 778
           WRLPE+LV+HLKRFSY R  ++KLETFVNFPIHD +LTKY+A+++  ++  YELYA++NH
Sbjct: 438 WRLPEILVVHLKRFSYVR-YQNKLETFVNFPIHDLDLTKYLAHRSVPQQHEYELYAVSNH 496

Query: 779 YGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           YGG G GHYTA + L  + +WYNFDDSH++P +ED +KS AAYVLFYRR
Sbjct: 497 YGGTGGGHYTAFVNLDLDGQWYNFDDSHVTPASEDHLKSPAAYVLFYRR 545


>gi|11993469|gb|AAG42753.1|AF302662_1 ubiquitin-specific protease 8, partial [Arabidopsis thaliana]
          Length = 470

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/476 (46%), Positives = 311/476 (65%), Gaps = 9/476 (1%)

Query: 352 RPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATT 411
           RPD EVADEYW  H+ARNDSIIVDVCQGQYKSTLVCP+C KVSV FDPFMYLSLPL  T+
Sbjct: 1   RPDAEVADEYWRPHVARNDSIIVDVCQGQYKSTLVCPICKKVSVMFDPFMYLSLPLPCTS 60

Query: 412 TRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQ 471
            RTM +TV ++DGS+LP   TV VPK G+  DL + L   CSL + E L V E+ N+ I 
Sbjct: 61  MRTMDLTVMSADGSSLPIPLTVNVPKFGKFEDLHKALVTACSLPEEETLLVTEVYNNRII 120

Query: 472 RFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTP 531
           RFL++P  SL+ I+D D L  YR+ K    +  +  +H+  E++  + +++  WKA+G P
Sbjct: 121 RFLEEPTDSLTLIRDGDKLVVYRLKKDANNSPLIVYMHQKLEEQFISGKSSPTWKAFGIP 180

Query: 532 LVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSS 591
           LVS +   DV +   +++   ++LS F         +  +P+    T     +  ++   
Sbjct: 181 LVSRLC--DVENGSDVENLYLKLLSSFKMPTEFFTENLENPTEEEATDKTDTDGTTSVED 238

Query: 592 NIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLL 651
             + +   +++++  P L L L D+     +  +  +K +   + S  + V   W  K L
Sbjct: 239 TNSTDVKETTESLPDPVLRLYLTDDRGNSIEAEMLKEKPV---NKSKRLNVLARWPVKEL 295

Query: 652 EKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQ 711
           + Y+T FL +L EV K+G  TK+ + E +SL+ CLEAFL EEPL P+DMWYCP CKE RQ
Sbjct: 296 DVYDTCFLSSLPEVSKSG--TKRPQ-ESVSLFKCLEAFLTEEPLGPDDMWYCPGCKEHRQ 352

Query: 712 ASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYE 771
           A KKLDLWRLPE+LVIHLKRFSYSR MK+KLE +V+FP+ + +L+ Y++ KN      Y 
Sbjct: 353 AIKKLDLWRLPEILVIHLKRFSYSRFMKNKLEAYVDFPLDNLDLSSYISYKNGQTTYRYM 412

Query: 772 LYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           LYA++NHYG MG GHYTA++     +RWY+FDDSH+  I+++ +K++AAYVLFY+R
Sbjct: 413 LYAISNHYGSMGGGHYTAYVH-HGGDRWYDFDDSHVHQISQEKIKTSAAYVLFYKR 467


>gi|414588302|tpg|DAA38873.1| TPA: hypothetical protein ZEAMMB73_967629 [Zea mays]
          Length = 467

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 241/429 (56%), Positives = 284/429 (66%), Gaps = 78/429 (18%)

Query: 86  YGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVMPRGECSTIRISKKETIGELHRRACS 145
           YGGGPTL RK I++G SQT+LA+EVYPLRLQL++M RGE + IRISKK            
Sbjct: 66  YGGGPTLPRKAINTGFSQTDLAIEVYPLRLQLILMSRGERTFIRISKK------------ 113

Query: 146 IFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQD 205
                   +CIWDYYG  KH+LM+ +D+TLDDANIQMDQ+ILVEV  + +G+     ++ 
Sbjct: 114 --------VCIWDYYGRTKHSLMDSLDKTLDDANIQMDQNILVEVTTDASGS-LDGLVKR 164

Query: 206 NGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASAR-DSDNTLGSS 264
           N F E  A        KS L     ++A+   SR++SS ++ S  L S   D DN  GSS
Sbjct: 165 NNFFESDAP-------KSGLPDEN-FAANNYASRSYSSSLTPSIYLRSPNGDLDNVHGSS 216

Query: 265 GVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDYRREINWQNPLGMV--- 321
           G+ TRG+ +GLTGLLNLGNTC+MNSAIQCLVHTP+F +YF EDY REIN QNPLG V   
Sbjct: 217 GMITRGSPLGLTGLLNLGNTCYMNSAIQCLVHTPQFTKYFCEDYHREINRQNPLGNVGEL 276

Query: 322 ---------------------------------------------ELLAFLLDGLHEDLN 336
                                                        ELLAFLLDGLHEDLN
Sbjct: 277 ALAFGELLRKLWAPGGRAPVSPRPFKMKLSRFASQFSGYNQHDSQELLAFLLDGLHEDLN 336

Query: 337 RVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVT 396
           RVKH+PYI S DADGR DEEVADEYWANHIARN+SIIVDVCQGQYKSTLVCPVC KVSVT
Sbjct: 337 RVKHRPYINSGDADGRSDEEVADEYWANHIARNNSIIVDVCQGQYKSTLVCPVCGKVSVT 396

Query: 397 FDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQ 456
           FDPFMYLSLPLQ  +TR++T  VF+ DGS  P+ +TV VPK GRCRDL+Q LG  CSLK 
Sbjct: 397 FDPFMYLSLPLQFASTRSVTAVVFSCDGSVPPTPFTVNVPKQGRCRDLLQALGAACSLKN 456

Query: 457 SEELKVAEI 465
            E+L +AE+
Sbjct: 457 GEKLLIAEV 465


>gi|202070754|ref|NP_001128484.1| ubiquitin carboxyl-terminal hydrolase 4 isoform a [Rattus
           norvegicus]
 gi|302595968|sp|B2GUZ1.1|UBP4_RAT RecName: Full=Ubiquitin carboxyl-terminal hydrolase 4; AltName:
           Full=Deubiquitinating enzyme 4; AltName: Full=Ubiquitin
           thioesterase 4; AltName:
           Full=Ubiquitin-specific-processing protease 4
 gi|149018536|gb|EDL77177.1| similar to Ubiquitin carboxyl-terminal hydrolase 4 (Ubiquitin
           thiolesterase 4) (Ubiquitin-specific processing protease
           4) (Deubiquitinating enzyme 4) (Ubiquitous nuclear
           protein), isoform CRA_a [Rattus norvegicus]
 gi|183985839|gb|AAI66460.1| Usp4 protein [Rattus norvegicus]
          Length = 961

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 306/933 (32%), Positives = 453/933 (48%), Gaps = 159/933 (17%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 41  WFKQWKKYVGFD----SWDMYNVGEH--------NLFPGPIDNSGLFSDPESQT------ 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 83  LKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 142

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T
Sbjct: 143 CENSDPTNVLS-CHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNT 201

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS 234
           + DA +   Q +++E   N +GT  + ++Q                SKSS + +  ++ S
Sbjct: 202 IQDAGLYQGQVLVIEP-QNEDGTWPRQTLQ----------------SKSSTAPSRNFTTS 244

Query: 235 KGTSRNHSSEISTSPNLASARDSDNTLG--SSGVTTRGASV----------------GLT 276
              S +  S +S S  L +  DS N+ G  +SGV+  GA                  GL 
Sbjct: 245 SKPSASPYSSMSAS--LIANGDSTNSSGMHNSGVSRGGAGFSASYNCQEPPSPHIQPGLC 302

Query: 277 GLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV-------------- 321
           GL NLGNTCFMNSA+QCL +T     YF +++Y  EIN  NPLGM               
Sbjct: 303 GLGNLGNTCFMNSALQCLSNTGPLTEYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQM 362

Query: 322 ---------------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKD 348
                                            ELLAF+LDGLHEDLNRVK KPY++ KD
Sbjct: 363 WSGRDTHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFILDGLHEDLNRVKKKPYLEPKD 422

Query: 349 ADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQ 408
           A+GRPD  VA E W NH  RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL 
Sbjct: 423 ANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLP 482

Query: 409 ATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNH 468
               R M V +  +D    P  Y VTVP  G   DL + L  +  +  +E + V ++ NH
Sbjct: 483 LKKDRIMEVFLVPADPHCRPIQYRVTVPLMGAISDLCEALSKLSGIA-AENMVVTDVYNH 541

Query: 469 SIQR-FLDDPLISLSTIKDDDHLAAYRVPKL-VKKAVFLQLIHRLQEQEPGAAQTTSQWK 526
              + F  D  +S  T +DD  +  Y +    +  + ++ L    +E++   + T+S   
Sbjct: 542 RFHKIFQMDEGLSHITPRDD--IFVYEICTTPMDGSEYITLPVYFREKKSRPSSTSSGAV 599

Query: 527 AYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKK------------------------- 561
            YG PL+ S+ +  +      Q+  +R +S ++K+                         
Sbjct: 600 LYGQPLLVSVPKHRLTLESLYQAVCER-ISRYIKQPLPEEFLSSPLEPGACNGSRGSYEG 658

Query: 562 --ESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPN----LPLQLVD 615
             E + H +  +    ++ V+ SGE      S       ++ KA   P         LV+
Sbjct: 659 DEEEMDHQE--EGKEQLSEVEESGE-----DSQGGDPTETTQKAKGPPRHKRLFTFSLVN 711

Query: 616 ESNVCFDLSVEGD-KTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKK 674
                   S+  D K +++ S ST   + +DW  +    Y         E   +    +K
Sbjct: 712 SCGTADINSLATDGKLLKLNSRST---LAIDWDSETRSLYFDEQESEACEKHTSMSQPQK 768

Query: 675 ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            +   ++L  C+E F   E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY
Sbjct: 769 KKKAAIALRECIELFTTMETLGEHDPWYCPTCKKHQQATKKFDLWSLPKILVVHLKRFSY 828

Query: 735 SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
           +R  + KL+T V FP+   N++++V ++ ++R  +Y+L A++NHYG MG GHYTA+ K  
Sbjct: 829 NRYWRDKLDTVVEFPVRALNMSEFVCDR-AARPYVYDLIAVSNHYGAMGVGHYTAYAKNR 887

Query: 795 DENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
              +WY FDDS +S  +ED + + AAYVLFY+R
Sbjct: 888 LNGKWYYFDDSSVSLASEDQIVTKAAYVLFYQR 920


>gi|224066024|ref|XP_002192515.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Taeniopygia
           guttata]
          Length = 904

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 305/916 (33%), Positives = 426/916 (46%), Gaps = 165/916 (18%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +  G G   L  F     +A   P  IDNS L  D   +       
Sbjct: 43  WFKQWKKYVGFDNWDMFGAGHPNL--FPGPVDNAGLFPGPIDNSGLFGDPQTQS------ 94

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 95  LKEHLIDELDYVLVPTEAWNKLVAWYGCIDGQQPIVRKVVEYGLFVKHYKVEVYLLELKL 154

Query: 118 LVMPRGE-CSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                 +       SK +T+  + +    +F +  E +  +W+ Y    +  ++ +D T+
Sbjct: 155 CESSDPDNVINCHFSKADTVATIEKEMRKLFSIPAEKETRLWNRYMSNTYEQLSKLDSTV 214

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +L+EV  N +GT                      P +  L+   G+  + 
Sbjct: 215 QDAGLYQGQVVLIEV-KNEDGT---------------------WPGQHCLAKGSGFVCNS 252

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
              R+ +S                           +  GL GL NLGNTCFMNSA+QCL 
Sbjct: 253 YNCRDSASL--------------------------SQPGLCGLSNLGNTCFMNSALQCLS 286

Query: 296 HTPEFARYFRED-YRREINWQNPLGM---------------------------------- 320
           +TP    YF ED Y  EIN  NPLGM                                  
Sbjct: 287 NTPPLTDYFLEDKYEAEINQNNPLGMRGEIAEAYADLIKQMWSGRQSHVAPRMFKTQVGR 346

Query: 321 -------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELLAFLLDGLHEDLNRVK KPY++ KDA+GRPD EVA E W NH  
Sbjct: 347 FAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDSEVAKEAWENHRL 406

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDSIIVD+  G +KSTLVCP C+KVSVTFDPF YL+LPL     R M VT+  +D    
Sbjct: 407 RNDSIIVDIFHGLFKSTLVCPKCSKVSVTFDPFCYLTLPLPLRRDRPMEVTLVYADPQRR 466

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTIK 485
           P  Y V VP  G   DL + L  +  +  +E + V ++ NH   +   +D+    L+ I 
Sbjct: 467 PVQYRVVVPVMGAISDLCESLSKLSGVP-AENMVVTDVYNHRFHKIFQMDE---GLNPIM 522

Query: 486 DDDHLAAYRVPKLVKKAV-FLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISS 544
             D +  Y V K  +    ++ L    +E+    +  TS    +G PL+ S+ +   ++ 
Sbjct: 523 PKDDIFVYEVCKPSEDGSEYVTLSIYFREKTMRQSSNTSGTVLFGQPLLISVPKHK-LTV 581

Query: 545 GKIQSTVQRMLSPFLKK---------------------------ESLMHADSFDPS-SMV 576
             + S V   +S  +K                            E + H D  +     +
Sbjct: 582 DHLYSVVLEQISRCVKLPLAEEYSPPCPDRGTCNGSNGVVEGDIEEMEHQDGGEEGKEKL 641

Query: 577 TTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSS 636
           T VDP    HS     +  E A   +     +    LV+ S      S+   K +++ + 
Sbjct: 642 TEVDP---CHSEGCMQV--ESARDLQPCKKQHFTFSLVNSSGTSEINSIVEGKILKLNAF 696

Query: 637 STSIVVYVDWSQKLLEKYNTHFLENLLEVF-KNG----PVTKKARTEPLSLYTCLEAFLR 691
           S    V  DW     E     + E   + F K+G    P  KKA    ++L  C+E F  
Sbjct: 697 SA---VATDWDS---ETRRLLYDEQEAQAFEKHGSMLQPQKKKAV---VALRDCIELFTT 747

Query: 692 EEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIH 751
            E L   D WYCP CK+ +QA+KK DLW LP +LV+HLKRFSYSR  + KL+T V FPI 
Sbjct: 748 METLGEHDPWYCPNCKKHQQATKKFDLWSLPRILVVHLKRFSYSRYWRDKLDTVVEFPIR 807

Query: 752 DFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPIN 811
             N++++V +  +    +Y+L A++NHYG MG GHYTA+ K    N+WY FDDS +S  +
Sbjct: 808 GLNMSEFVCDPRAGSY-VYDLIAVSNHYGAMGVGHYTAYAKNKVNNKWYYFDDSSVSVAS 866

Query: 812 EDDVKSAAAYVLFYRR 827
           ED + + AAYVLFY R
Sbjct: 867 EDQIVTKAAYVLFYER 882


>gi|449531424|ref|XP_004172686.1| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal
           hydrolase 8-like, partial [Cucumis sativus]
          Length = 588

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 261/626 (41%), Positives = 346/626 (55%), Gaps = 97/626 (15%)

Query: 134 ETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVE--VL 191
           + + EL RRAC +F +  E + IWD+ GH      N       +   Q DQ++L+E  V 
Sbjct: 1   DNVVELFRRACKLFNVESELLRIWDFSGHTISLFSNS------NKQRQSDQEVLLELQVY 54

Query: 192 DNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNL 251
              +   CK   +D     + A+S+L   S +SL + G    + GT       +++S   
Sbjct: 55  GLSDFIKCKEGKKD-----ELANSILGNSSATSLMMNG----ASGTGSASCFRVNSSVFS 105

Query: 252 ASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDYRRE 311
            S+R++              S+GLTGL NLGNTCFMNSA+QCLVHTP+   YF  DY RE
Sbjct: 106 GSSREA-------------GSLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYGRE 152

Query: 312 INWQNPLGM-----------------------------------------------VELL 324
           IN  NPLGM                                                ELL
Sbjct: 153 INHDNPLGMNGEIALAFGDMLRKLWAPGASPVAPRTFKSKLARFAPQFSGCNQHDSQELL 212

Query: 325 AFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKST 384
           AFLLDGLHEDLNRVK KPY+++KD DGR D EVADEYW NH+ARNDSIIVDVCQGQYKST
Sbjct: 213 AFLLDGLHEDLNRVKKKPYVEAKDGDGRSDNEVADEYWQNHLARNDSIIVDVCQGQYKST 272

Query: 385 LVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDL 444
           LVCP+C KVS TFDPFMYLSLPL +TT RTMT+TV ++DGS  P+ YT+TVPK G+  DL
Sbjct: 273 LVCPICKKVSTTFDPFMYLSLPLPSTTMRTMTLTVVSTDGST-PAPYTITVPKSGKWEDL 331

Query: 445 IQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPK---LVKK 501
           I+ L   CSLK  E L VAE+ N+ I R+L++P  SLS I+D D L AYR+ K    V  
Sbjct: 332 IKALSIACSLKADETLLVAEVYNNRIIRYLEEPADSLSLIRDGDRLVAYRLAKDEEQVPL 391

Query: 502 AVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKK 561
           AVF+    R++EQ     +TTS  KA+G PLV+ +      +   I+   +++LSP+  +
Sbjct: 392 AVFMH--QRIEEQYINGKRTTS-LKAFGFPLVAKLPGG--FNGSDIKDIYKKLLSPY--Q 444

Query: 562 ESLMHADSFDPSSMVTTVDPSGEAHSNSSSN-------IAKEDASSSKAVTLPNLPLQLV 614
            S   A   + +S V T + + E  + +SS        +  ED  +  + +  +L     
Sbjct: 445 VSAPDALEENHTSDVDTTEKTKEVENGTSSTSACVIDPLTIEDGVNCDSPSDADLQFYTT 504

Query: 615 DESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKK 674
           D+  +     +E  + +     S  + V V W +K +E Y+TH L +L EVFK+     K
Sbjct: 505 DDKGIIRGSEIEVGEFVVGSEKSKRLYVLVSWPEKQIESYDTHLLTSLPEVFKSS--FAK 562

Query: 675 ARTEPLSLYTCLEAFLREEPLVPEDM 700
              E +SLY CLEAFL+EEPL PEDM
Sbjct: 563 RPQESVSLYKCLEAFLQEEPLGPEDM 588


>gi|344275820|ref|XP_003409709.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4-like isoform 1
           [Loxodonta africana]
          Length = 961

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 309/933 (33%), Positives = 451/933 (48%), Gaps = 160/933 (17%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 41  WFKQWKKYVGFD----SWDMYNVGEH--------NLFPGPIDNSGLFSDPESQ------T 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 83  LKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 142

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T
Sbjct: 143 CENSDPTNVLS-CHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNT 201

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS 234
           + DA +   Q +++E   N +GT  + ++Q                 KSS++ +  ++ S
Sbjct: 202 VQDAGLYQGQVLVIEP-QNEDGTWPRQTLQ----------------PKSSIAPSRNFTTS 244

Query: 235 KGTSRNHSSEISTSPNLASARDSDNTLG--SSGVTTRGASV----------------GLT 276
             +S +  S +S SP   +  DS NT G   SGV+  G+                  GL 
Sbjct: 245 PKSSASPYSAVSASP--IANGDSTNTSGMHCSGVSRGGSGFSASYNCQESPSSHIQPGLC 302

Query: 277 GLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV-------------- 321
           GL NLGNTCFMNSA+QCL +T     YF +++Y  EIN  NPLGM               
Sbjct: 303 GLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQM 362

Query: 322 ---------------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKD 348
                                            ELLAFLLDGLHEDLNRVK KPY++ KD
Sbjct: 363 WSGRDTHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKD 422

Query: 349 ADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQ 408
           A+GRPD  VA E W NH  RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL 
Sbjct: 423 ANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLP 482

Query: 409 ATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNH 468
               R M V +  +D    P+ Y VTVP  G   DL + L  +  +  +E + V ++ NH
Sbjct: 483 LKKDRIMEVFLVPADPCCRPTQYRVTVPLMGAVSDLCEALSRLSGIA-AENMVVTDVYNH 541

Query: 469 SIQRF--LDDPLISLSTIKDDDHLAAYRVPKLV---KKAVFLQLIHRLQEQEPGAAQTTS 523
              +   +D+    L+ I   D +  Y V        + V L +  R ++  P +  T+S
Sbjct: 542 RFHKIFQMDE---GLNHIMPRDDIFVYEVCSASADGSECVTLPVYFRERKSRPSS--TSS 596

Query: 524 QWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSG 583
               YG PL+ S+ +  +      Q+  +R +S ++K + L       P  +       G
Sbjct: 597 GAVLYGQPLLLSVPKHKLTLESLYQAVCER-ISRYIK-QPLPDEPGSSPLELGACNGSRG 654

Query: 584 EAHSNSSSNIA-----KED--------------ASSSKAVTLPNLPLQLVDESNV----- 619
                    +      KE+               +  K V     P +L   S V     
Sbjct: 655 SCEGEQEEEMEHQEEGKEELSETEGSGEEELGSETIQKKVEGQTCPKRLFTFSLVNSYGT 714

Query: 620 --CFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVT---KK 674
                L+ +G K +++ S ST   + +DW     E  N ++ E   E ++        +K
Sbjct: 715 ADINSLATDG-KLLKLNSRST---LAIDWDS---ETRNLYYDEQESEAYEKHVSMLQPQK 767

Query: 675 ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            +   ++L  C+E F   E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY
Sbjct: 768 KKKTSVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSY 827

Query: 735 SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
           +R  + KL+T V FP+   N++++V +  S+R  +Y+L A++NHYG MG GHYTA+ K  
Sbjct: 828 NRYWRDKLDTVVEFPVRALNMSEFVCDL-SARPYVYDLIAVSNHYGAMGVGHYTAYAKNK 886

Query: 795 DENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
              +WY FDDS +S  +ED + + AAYVLFY+R
Sbjct: 887 LNGKWYYFDDSSVSLASEDQIVTKAAYVLFYQR 919


>gi|351711884|gb|EHB14803.1| Ubiquitin carboxyl-terminal hydrolase 4 [Heterocephalus glaber]
          Length = 964

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 306/935 (32%), Positives = 442/935 (47%), Gaps = 161/935 (17%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D      D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 41  WFKQWKKYVGFD----NWDMYNVGEH--------NLFPGPIDNSGLFSDPKSQ------T 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 83  LKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 142

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F + +E +  +W+ Y    +  ++ +D T
Sbjct: 143 CENSDPTNVLS-CHFSKADTIATIEKEMRKLFNIPVERETRLWNKYMSNTYEQLSKLDNT 201

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS 234
           + DA +   Q +++E   N +GT  + ++Q                SKSS + +  ++ S
Sbjct: 202 IQDAGLYQGQVLVIEP-QNEDGTWPRQTVQ----------------SKSSTAPSRNFTTS 244

Query: 235 KGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASV------------------GLT 276
             +S +  S +STSP   +  DS NT G    +                        GL 
Sbjct: 245 PKSSASPYSSMSTSP--VANGDSTNTSGVHSSSVSRGGSGFSASYNCQEPPSSHIQPGLC 302

Query: 277 GLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV-------------- 321
           GL NLGNTCFMNSA+QCL +T     YF +++Y  EIN  NPLGM               
Sbjct: 303 GLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQM 362

Query: 322 ---------------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKD 348
                                            ELLAF+LDGLHEDLNRVK KPY+  KD
Sbjct: 363 WSGRDTHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFILDGLHEDLNRVKKKPYLLPKD 422

Query: 349 ADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQ 408
           A+GRPD  VA E W NH  RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL 
Sbjct: 423 ANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLP 482

Query: 409 ATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNH 468
               R M V +  +D    P+ Y VTVP  G   DL + L  +  +  +E + V ++ NH
Sbjct: 483 LKKDRVMEVFLVPADPHCRPTQYRVTVPLMGAVSDLCEALSRLSGIA-AETMVVTDVYNH 541

Query: 469 SIQRF--LDDPLISLSTIKDDDHLAAYRVPKLV---KKAVFLQLIHRLQEQEPGAAQTTS 523
              +   +D+    LS I   D +  Y V        + V L +  R ++ +P  A T+S
Sbjct: 542 RFHKIFQMDE---GLSHIMPRDDIFVYEVCSTSSDGSECVMLPVYFRERKSKP--AGTSS 596

Query: 524 QWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKK---------------------- 561
               YG PL+ SI +  +      Q+   R +S ++K+                      
Sbjct: 597 GAVLYGQPLLVSIPKHKLTLESLYQAVCDR-ISRYIKQPLPDEFCSLPLEPGACSGSRGS 655

Query: 562 ------ESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPN--LPLQL 613
                 E + H D           +P G    N   + ++      K    P       L
Sbjct: 656 CEGDDEEEMEHQD----EGKEQFSEPEGSVEDNLGGDPSEATQKKVKGQPCPRRLFTFSL 711

Query: 614 VDESNVCFDLSVEGD-KTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVT 672
           V+        S+  D K +++ S ST   + +DW  +    Y         E   +    
Sbjct: 712 VNSYGTADINSLATDGKLLKLNSRST---LAIDWDSETRSLYYDEQESEAYEKHMSIVQP 768

Query: 673 KKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF 732
           +K +   ++L  C+E F   E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRF
Sbjct: 769 QKKKKTSVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRF 828

Query: 733 SYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIK 792
           SY+R  + KL+T V FP+   N++++V +  S+R  +Y+L A++NHYG MG GHYTA+ K
Sbjct: 829 SYNRYWRDKLDTVVEFPVRALNMSEFVCDP-SARPYMYDLIAVSNHYGAMGVGHYTAYAK 887

Query: 793 LLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
                +WY FDDS++S  +ED + + AAYVLFY+R
Sbjct: 888 NRFSGKWYYFDDSNVSLASEDQIVTKAAYVLFYQR 922


>gi|410919011|ref|XP_003972978.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like [Takifugu
           rubripes]
          Length = 1015

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 315/940 (33%), Positives = 451/940 (47%), Gaps = 153/940 (16%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G   +             P  +DNS L+ D      G    
Sbjct: 37  WFKQWKKYVGFDNWDKYQMGEQDV------------YPGPVDNSGLLRD------GDVLA 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           I + L++  DYIL+P E WN+L SWYG   G   +ARKV+  G+      VEV+   L+L
Sbjct: 79  IKEHLIDELDYILVPTEGWNKLVSWYGLTEGQEPIARKVVEQGMFVKHCKVEVFLTELKL 138

Query: 118 LVMPRGE-CSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                 +   T R SK +TI  +      +F +  E +  +W+ Y       +N  D T+
Sbjct: 139 CRDSNMDNVITRRFSKADTIDMIEHEMRKLFSIPDEKETRLWNRYMTNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKAS-----SVLVEPSKSSLSIAGG 230
            DA +   Q +++E   N +GT  + S    G    K+S     S L + S SSL+    
Sbjct: 199 QDAGLYQGQVLVIEQ-KNEDGTWPRGS----GSTAPKSSGASNLSALPKISPSSLT---- 249

Query: 231 WSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSA 290
              +  +S N  +  ++S +L S  +S +    S  + R    GL GL NLGNTCFMNSA
Sbjct: 250 --NNHNSSFNSRNVKNSSFSLPSYHNSYDYSDQSRPSERS---GLCGLSNLGNTCFMNSA 304

Query: 291 IQCLVHTPEFARYFRED-YRREINWQNPLGMV---------------------------- 321
           +QCL + P    YF +D Y  E+N  NPLGM                             
Sbjct: 305 VQCLSNIPPLTEYFLKDKYTDELNEDNPLGMKGEIARAYAELIKQIWSGKYSYVTPRPFK 364

Query: 322 -------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYW 362
                              ELLAFLLDGLHEDLNR++ KPYI+ KDA+GRPD+ VA+E W
Sbjct: 365 TQVGRFAPQFSGYQQQDSHELLAFLLDGLHEDLNRIRKKPYIQLKDANGRPDKVVAEEAW 424

Query: 363 ANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTS 422
            NHI RNDSIIVD+  G +KSTLVCPVC+KVSVTFDPF YL+LPL     RT+ V +   
Sbjct: 425 ENHIKRNDSIIVDIFHGLFKSTLVCPVCSKVSVTFDPFCYLTLPLPMKKERTLEVYLVRL 484

Query: 423 DGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLS 482
           D  A P+ Y +TVPK G   DL   L  +  +  ++++ V +I NH   R       +LS
Sbjct: 485 DPLAKPTQYKLTVPKVGYISDLCTSLSYLSGVP-ADKMIVTDICNHCFHRIFATNE-NLS 542

Query: 483 TIKDDDHLAAYRVP-KLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDV 541
           +I + D +  + +P   V+    + +   L+E+   +    +    +G P + ++ R   
Sbjct: 543 SIIERDDIYVFELPVNRVEDTDHVVIPVHLREKYKQSGYNHTSTTLFGQPFLIAVPR--T 600

Query: 542 ISSGKIQSTVQRMLSPFLKKE---------------------------------SLMHAD 568
           +S  K  + +   L  F+K                                   S M  D
Sbjct: 601 LSEDKFYNMLLLRLCRFVKSPVEEDEQDCEETQASKQHTLNGNATNGMLEEGSPSEMETD 660

Query: 569 SFDPSSMVTTVDPSGEAHSNSSSNIAKEDA---------SSSKAVTLPN------LPLQL 613
             D  S      PS   +S S  ++  ++          +S+KA              Q 
Sbjct: 661 EQDDESSQDQELPSENDNSQSEDSVGGDNELENGMGCPQNSTKAPQTAGHNRKRLFTFQF 720

Query: 614 VDESNVCFDLSVEGDKTIRIPSS----STSIVVYVDWSQKLLEKYNTHFLENLLEVFKNG 669
            +       +  E  + IR        S    + +DW  +  +KY   F E ++E F   
Sbjct: 721 NNMGKTDHSIIKEDTRQIRFDEGHLRLSDRSYLSLDWEPETKKKY---FDETVVEDFDKH 777

Query: 670 PVT--KKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVI 727
                K  +     L  C+E F  +E L  ED WYCP CK+ +QA+KKLDLW LP VLV+
Sbjct: 778 ESMDYKPQKKAFFKLKDCIELFTTKEKLGAEDPWYCPNCKQHQQATKKLDLWSLPPVLVV 837

Query: 728 HLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHY 787
           HLKRFSYSR M+ KL++ V+FP+ D ++++++ N N+   + Y+L A++NHYGGMG GHY
Sbjct: 838 HLKRFSYSRYMRDKLDSLVDFPLRDLDMSEFLINPNAGPCR-YDLIAVSNHYGGMGGGHY 896

Query: 788 TAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           TA+ K  D+ +WY FDDS +SP +ED + S A YVLFY+R
Sbjct: 897 TAYAKNKDDGKWYYFDDSSVSPASEDQIVSKAGYVLFYQR 936


>gi|410964963|ref|XP_003989022.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15 isoform 2
           [Felis catus]
          Length = 961

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 306/941 (32%), Positives = 431/941 (45%), Gaps = 179/941 (19%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E               ++G   +  S+  V+ S   L     ++A K
Sbjct: 199 QDAGLYQGQVLVIE------------QKNEDGTWPRGPSAPNVKNSNYCLP---SYTAYK 243

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
               +     +  P                        GL GL NLGNTCFMNSAIQCL 
Sbjct: 244 NYDYSEPGRNNEQP------------------------GLCGLSNLGNTCFMNSAIQCLS 279

Query: 296 HTPEFARYFRED-YRREINWQNPLGM---------------------------------- 320
           +TP    YF  D Y+ E+N+ NPLGM                                  
Sbjct: 280 NTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGR 339

Query: 321 -------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E W NH+ 
Sbjct: 340 FAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKIVAEEAWENHLK 399

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V +   D    
Sbjct: 400 RNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPLTK 459

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTIKD 486
           P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R F  D  +S    +D
Sbjct: 460 PMQYKVVVPKIGNILDLCTALSALSGVP-ADKMIVTDIYNHRFHRIFAMDENLSSIMERD 518

Query: 487 DDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSG 545
           D ++    + +    + V + +  R + +       T     +G P + ++ R++  +  
Sbjct: 519 DIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGS-SLFGQPFLMAVPRNN--TED 575

Query: 546 KIQSTVQRMLSPFLK--------------------------------KESLMHADSFDPS 573
           K+ + +   +  ++K                                  S M  D  D  
Sbjct: 576 KLYNLLLLRMCRYVKISTETEETEGSLHCCKDQNINGNGPNGIHEEGSPSEMETDEPDDE 635

Query: 574 SMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCF----------DL 623
           S      PS   +S S  ++  ++ S +   T      QL       F          D+
Sbjct: 636 SSQDQELPSENENSQSEDSVGGDNDSENGLCTEETCKSQLTGHKKRLFTFQFNNLGNTDI 695

Query: 624 SVEGDKTIRIPSSSTSI------VVYVDWSQKLLEKYNTHFLENLLEVF-KNGPVTKKAR 676
           +   D T  I      +       + +DW   L ++Y   F EN  E F K+  V  K  
Sbjct: 696 NYIKDDTRHIRFDERQLRLDERSFLALDWDPDLKKRY---FDENAAEDFEKHESVEYKPP 752

Query: 677 TEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYS 735
            +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VLV+HLKRFSYS
Sbjct: 753 KKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYS 812

Query: 736 RSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL- 794
           R M+ KL+T V+FPI+D ++++++ N N+   + Y L A++NHYGGMG GH+T  I    
Sbjct: 813 RYMRDKLDTLVDFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGGHFTEVIIFFI 871

Query: 795 --------DENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
                   D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 872 RYCFRKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 912


>gi|410964961|ref|XP_003989021.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15 isoform 1
           [Felis catus]
          Length = 990

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 313/950 (32%), Positives = 438/950 (46%), Gaps = 168/950 (17%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E   N +GT  +                   PS      A  +SA  
Sbjct: 199 QDAGLYQGQVLVIEQ-KNEDGTWPRG------------------PSAPKSPGASNFSALP 239

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGS---------SGVTTRGASVGLTGLLNLGNTCF 286
             S +  S    + N  + ++S+  L S         S         GL GL NLGNTCF
Sbjct: 240 KISPSSLSNNYNNINNRNVKNSNYCLPSYTAYKNYDYSEPGRNNEQPGLCGLSNLGNTCF 299

Query: 287 MNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM------------------------- 320
           MNSAIQCL +TP    YF  D Y+ E+N+ NPLGM                         
Sbjct: 300 MNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTP 359

Query: 321 ----------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVA 358
                                  ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA
Sbjct: 360 RAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKIVA 419

Query: 359 DEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVT 418
           +E W NH+ RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V 
Sbjct: 420 EEAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVY 479

Query: 419 VFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDP 477
           +   D    P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R F  D 
Sbjct: 480 LVRMDPLTKPMQYKVVVPKIGNILDLCTALSALSGVP-ADKMIVTDIYNHRFHRIFAMDE 538

Query: 478 LISLSTIKDDDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSI 536
            +S    +DD ++    + +    + V + +  R + +       T     +G P + ++
Sbjct: 539 NLSSIMERDDIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGS-SLFGQPFLMAV 597

Query: 537 SRDDVISSGKIQSTVQRMLSPFLK--------------------------------KESL 564
            R++  +  K+ + +   +  ++K                                  S 
Sbjct: 598 PRNN--TEDKLYNLLLLRMCRYVKISTETEETEGSLHCCKDQNINGNGPNGIHEEGSPSE 655

Query: 565 MHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCF--- 621
           M  D  D  S      PS   +S S  ++  ++ S +   T      QL       F   
Sbjct: 656 METDEPDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEETCKSQLTGHKKRLFTFQ 715

Query: 622 -------DLSVEGDKTIRIPSSSTSI------VVYVDWSQKLLEKYNTHFLENLLEVF-K 667
                  D++   D T  I      +       + +DW   L ++Y   F EN  E F K
Sbjct: 716 FNNLGNTDINYIKDDTRHIRFDERQLRLDERSFLALDWDPDLKKRY---FDENAAEDFEK 772

Query: 668 NGPVTKKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLV 726
           +  V  K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VLV
Sbjct: 773 HESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLV 832

Query: 727 IHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGH 786
           +HLKRFSYSR M+ KL+T V+FPI+D ++++++ N N+   + Y L A++NHYGGMG GH
Sbjct: 833 VHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGGH 891

Query: 787 YTAHIKLL---------DENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           +T  I            D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 892 FTEVIIFFIRYCFRKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 941


>gi|2580459|gb|AAB82339.1| putative [Mus musculus]
          Length = 962

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 301/918 (32%), Positives = 442/918 (48%), Gaps = 128/918 (13%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 41  WFKQWKKYVGFD----SWDMYNVGEH--------NLFPGPIDNSGLFSDPESQ------T 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 83  LKEHLIDELDYVLVPAEAWNKLLNWYGCVEGQQPIVRKVVDDGLFVKHCKVEVYLLELKL 142

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T
Sbjct: 143 CENSDPTNVLS-CHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNT 201

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQD-NGFAEKKASSVLVEPSKSSLSIAGGWSA 233
           + DA +   Q +++E   N +GT  + S+Q  +  A  +  +   +PS S          
Sbjct: 202 IQDAGLYQGQVLVIEP-QNEDGTWPRQSLQSKSSTAPSRNFTTSSKPSASPYCSVSASLI 260

Query: 234 SKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQC 293
           + G S N SS + +S           +       +     GL GL NLGNTCFMNSA+QC
Sbjct: 261 ANGDSTN-SSGMHSSGVSRGGSGFSASYNCQEAPSPHIQPGLCGLGNLGNTCFMNSALQC 319

Query: 294 LVHTPEFARYF-REDYRREINWQNPLGMV------------------------------- 321
           L +T     YF +++Y  EIN  NPLGM                                
Sbjct: 320 LSNTAPLTEYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDTHVAPRMFKTQV 379

Query: 322 ----------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANH 365
                           ELLAF+LDGLHEDLNRVK KPY++ KDA+GRPD  VA E W NH
Sbjct: 380 GRFAPQFSGYQQQDSQELLAFILDGLHEDLNRVKKKPYLEPKDANGRPDAVVAKEAWENH 439

Query: 366 IARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGS 425
             RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL     R M V +  +D  
Sbjct: 440 RLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRIMEVFLVPADPQ 499

Query: 426 ALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTI 484
             P  Y VTVP  G   DL + L  +  +  +E + V ++ NH   + F  D  +S  T 
Sbjct: 500 CRPIQYRVTVPLMGAISDLCEALSKLSGIA-AENMVVTDVYNHRFHKIFQMDEGLSHITP 558

Query: 485 KDDDHLAAYRVPKLV---KKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDV 541
           +DD  +  Y V        + + L +  R ++  P +A  +S    YG PL+ S+ +  +
Sbjct: 559 RDD--IFVYEVCNTSMDGSECITLPVYFREKKSRPSSA--SSGAVLYGQPLLVSVPKHKL 614

Query: 542 ISSGKIQSTVQRMLSPFLKK--ESLMHADSFDPSS------------------------M 575
                 Q+   R +S ++K+       +   +P +                         
Sbjct: 615 TLESLYQAVCDR-ISRYIKQPLPDEFLSSPLEPGACNGSRSSYEGDEEEEMDHQEEGKEQ 673

Query: 576 VTTVDPSGE-----AHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGD-K 629
           ++ V+ SGE      HS S+  + K      +  T       LV+        S+  D K
Sbjct: 674 LSEVEGSGEDDQGDDHSESAQKV-KGQPRHKRLFT-----FSLVNSCGTADINSLATDGK 727

Query: 630 TIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAF 689
            +++ S ST   + +DW  +    Y         E   +    +K +   ++L  C+E F
Sbjct: 728 LLKLNSRST---LAIDWDSETRSLYFDEQESEACEKHLSMSQPQKKKKAAVALRECIELF 784

Query: 690 LREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFP 749
              E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + KL+T V FP
Sbjct: 785 TTMETLGEHDPWYCPTCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFP 844

Query: 750 IHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISP 809
           +   N++++V ++ S+R  +Y+L A++NHYG MG GHYTA+ K     +WY FDDS +S 
Sbjct: 845 VRALNMSEFVCDR-SARPYVYDLIAVSNHYGAMGVGHYTAYAKNRLNGKWYYFDDSSVSL 903

Query: 810 INEDDVKSAAAYVLFYRR 827
            +ED + + AAYVLFY+R
Sbjct: 904 ASEDQIVTKAAYVLFYQR 921


>gi|157824037|ref|NP_001099563.1| ubiquitin carboxyl-terminal hydrolase 4 isoform b [Rattus
           norvegicus]
 gi|149018537|gb|EDL77178.1| similar to Ubiquitin carboxyl-terminal hydrolase 4 (Ubiquitin
           thiolesterase 4) (Ubiquitin-specific processing protease
           4) (Deubiquitinating enzyme 4) (Ubiquitous nuclear
           protein), isoform CRA_b [Rattus norvegicus]
          Length = 914

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 295/915 (32%), Positives = 438/915 (47%), Gaps = 170/915 (18%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 41  WFKQWKKYVGFD----SWDMYNVGEH--------NLFPGPIDNSGLFSDPESQT------ 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 83  LKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 142

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T
Sbjct: 143 CENSDPTNVLS-CHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNT 201

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS 234
           + DA +   Q +++E   N +GT  + ++Q NG                      G+SAS
Sbjct: 202 IQDAGLYQGQVLVIEP-QNEDGTWPRQTLQSNG---------------------AGFSAS 239

Query: 235 KGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCL 294
                 ++ +   SP++                      GL GL NLGNTCFMNSA+QCL
Sbjct: 240 ------YNCQEPPSPHIQP--------------------GLCGLGNLGNTCFMNSALQCL 273

Query: 295 VHTPEFARYF-REDYRREINWQNPLGMV-------------------------------- 321
            +T     YF +++Y  EIN  NPLGM                                 
Sbjct: 274 SNTGPLTEYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDTHVAPRMFKTQVG 333

Query: 322 ---------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHI 366
                          ELLAF+LDGLHEDLNRVK KPY++ KDA+GRPD  VA E W NH 
Sbjct: 334 RFAPQFSGYQQQDSQELLAFILDGLHEDLNRVKKKPYLEPKDANGRPDAVVAKEAWENHR 393

Query: 367 ARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSA 426
            RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL     R M V +  +D   
Sbjct: 394 LRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRIMEVFLVPADPHC 453

Query: 427 LPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTIK 485
            P  Y VTVP  G   DL + L  +  +  +E + V ++ NH   + F  D  +S  T +
Sbjct: 454 RPIQYRVTVPLMGAISDLCEALSKLSGIA-AENMVVTDVYNHRFHKIFQMDEGLSHITPR 512

Query: 486 DDDHLAAYRVPKL-VKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISS 544
           DD  +  Y +    +  + ++ L    +E++   + T+S    YG PL+ S+ +  +   
Sbjct: 513 DD--IFVYEICTTPMDGSEYITLPVYFREKKSRPSSTSSGAVLYGQPLLVSVPKHRLTLE 570

Query: 545 GKIQSTVQRMLSPFLKK---------------------------ESLMHADSFDPSSMVT 577
              Q+  +R +S ++K+                           E + H +  +    ++
Sbjct: 571 SLYQAVCER-ISRYIKQPLPEEFLSSPLEPGACNGSRGSYEGDEEEMDHQE--EGKEQLS 627

Query: 578 TVDPSGEAHSNSSSNIAKEDASSSKAVTLPN----LPLQLVDESNVCFDLSVEGD-KTIR 632
            V+ SGE      S       ++ KA   P         LV+        S+  D K ++
Sbjct: 628 EVEESGE-----DSQGGDPTETTQKAKGPPRHKRLFTFSLVNSCGTADINSLATDGKLLK 682

Query: 633 IPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLRE 692
           + S ST   + +DW  +    Y         E   +    +K +   ++L  C+E F   
Sbjct: 683 LNSRST---LAIDWDSETRSLYFDEQESEACEKHTSMSQPQKKKKAAIALRECIELFTTM 739

Query: 693 EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHD 752
           E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + KL+T V FP+  
Sbjct: 740 ETLGEHDPWYCPTCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPVRA 799

Query: 753 FNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINE 812
            N++++V ++ ++R  +Y+L A++NHYG MG GHYTA+ K     +WY FDDS +S  +E
Sbjct: 800 LNMSEFVCDR-AARPYVYDLIAVSNHYGAMGVGHYTAYAKNRLNGKWYYFDDSSVSLASE 858

Query: 813 DDVKSAAAYVLFYRR 827
           D + + AAYVLFY+R
Sbjct: 859 DQIVTKAAYVLFYQR 873


>gi|164519045|ref|NP_035808.2| ubiquitin carboxyl-terminal hydrolase 4 [Mus musculus]
 gi|342187118|sp|P35123.3|UBP4_MOUSE RecName: Full=Ubiquitin carboxyl-terminal hydrolase 4; AltName:
           Full=Deubiquitinating enzyme 4; AltName: Full=Ubiquitin
           thioesterase 4; AltName:
           Full=Ubiquitin-specific-processing protease 4; AltName:
           Full=Ubiquitous nuclear protein
 gi|26354498|dbj|BAC40877.1| unnamed protein product [Mus musculus]
 gi|74140411|dbj|BAE42357.1| unnamed protein product [Mus musculus]
 gi|74146936|dbj|BAE25450.1| unnamed protein product [Mus musculus]
 gi|74199576|dbj|BAE41468.1| unnamed protein product [Mus musculus]
 gi|74211684|dbj|BAE29198.1| unnamed protein product [Mus musculus]
 gi|148689335|gb|EDL21282.1| ubiquitin specific peptidase 4 (proto-oncogene), isoform CRA_b [Mus
           musculus]
          Length = 962

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 301/918 (32%), Positives = 442/918 (48%), Gaps = 128/918 (13%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 41  WFKQWKKYVGFD----SWDMYNVGEH--------NLFPGPIDNSGLFSDPESQ------T 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 83  LKEHLIDELDYVLVPAEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 142

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T
Sbjct: 143 CENSDPTNVLS-CHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNT 201

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQD-NGFAEKKASSVLVEPSKSSLSIAGGWSA 233
           + DA +   Q +++E   N +GT  + S+Q  +  A  +  +   +PS S          
Sbjct: 202 IQDAGLYQGQVLVIEP-QNEDGTWPRQSLQSKSSTAPSRNFTTSSKPSASPYCSVSASLI 260

Query: 234 SKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQC 293
           + G S N SS + +S           +       +     GL GL NLGNTCFMNSA+QC
Sbjct: 261 ANGDSTN-SSGMHSSGVSRGGSGFSASYNCQEPPSPHIQPGLCGLGNLGNTCFMNSALQC 319

Query: 294 LVHTPEFARYF-REDYRREINWQNPLGMV------------------------------- 321
           L +T     YF +++Y  EIN  NPLGM                                
Sbjct: 320 LSNTAPLTEYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDTHVAPRMFKTQV 379

Query: 322 ----------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANH 365
                           ELLAF+LDGLHEDLNRVK KPY++ KDA+GRPD  VA E W NH
Sbjct: 380 GRFAPQFSGYQQQDSQELLAFILDGLHEDLNRVKKKPYLEPKDANGRPDAVVAKEAWENH 439

Query: 366 IARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGS 425
             RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL     R M V +  +D  
Sbjct: 440 RLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRIMEVFLVPADPQ 499

Query: 426 ALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTI 484
             P  Y VTVP  G   DL + L  +  +  +E + V ++ NH   + F  D  +S  T 
Sbjct: 500 CRPIQYRVTVPLMGAISDLCEALSKLSGIA-AENMVVTDVYNHRFHKIFQMDEGLSHITP 558

Query: 485 KDDDHLAAYRVPKLV---KKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDV 541
           +DD  +  Y V        + + L +  R ++  P +A  +S    YG PL+ S+ +  +
Sbjct: 559 RDD--IFVYEVCNTSMDGSECITLPVYFREKKSRPSSA--SSGAVLYGQPLLVSVPKHKL 614

Query: 542 ISSGKIQSTVQRMLSPFLKK--ESLMHADSFDPSS------------------------M 575
                 Q+   R +S ++K+       +   +P +                         
Sbjct: 615 TLESLYQAVCDR-ISRYIKQPLPDEFLSSPLEPGACNGSRSSYEGDEEEEMDHQEEGKEQ 673

Query: 576 VTTVDPSGE-----AHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGD-K 629
           ++ V+ SGE      HS S+  + K      +  T       LV+        S+  D K
Sbjct: 674 LSEVEGSGEDDQGDDHSESAQKV-KGQPRHKRLFT-----FSLVNSCGTADINSLATDGK 727

Query: 630 TIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAF 689
            +++ S ST   + +DW  +    Y         E   +    +K +   ++L  C+E F
Sbjct: 728 LLKLNSRST---LAIDWDSETRSLYFDEQESEACEKHLSMSQPQKKKKAAVALRECIELF 784

Query: 690 LREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFP 749
              E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + KL+T V FP
Sbjct: 785 TTMETLGEHDPWYCPTCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFP 844

Query: 750 IHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISP 809
           +   N++++V ++ S+R  +Y+L A++NHYG MG GHYTA+ K     +WY FDDS +S 
Sbjct: 845 VRALNMSEFVCDR-SARPYVYDLIAVSNHYGAMGVGHYTAYAKNRLNGKWYYFDDSSVSL 903

Query: 810 INEDDVKSAAAYVLFYRR 827
            +ED + + AAYVLFY+R
Sbjct: 904 ASEDQIVTKAAYVLFYQR 921


>gi|410951165|ref|XP_003982270.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 isoform 1 [Felis
           catus]
          Length = 964

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 305/920 (33%), Positives = 443/920 (48%), Gaps = 131/920 (14%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 41  WFKQWKKYVGFD----SWDMYNVGEH--------NLFPGPIDNSGLFSDPESQ------T 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 83  LKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 142

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T
Sbjct: 143 CENSDPTNVLS-CHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNT 201

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNG-------FAEKKASSVLVEPSKSSLSI 227
           + DA +   Q +++E   N +GT  + ++Q          F     SS     S S+ SI
Sbjct: 202 VQDAGLYQGQVLVIEP-QNEDGTWPRQTLQSKSSTAPSRNFPTSPTSSASPYSSVSASSI 260

Query: 228 AGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFM 287
           A G   S  TS  HSS +S   +  SA  +     SS +       GL GL NLGNTCFM
Sbjct: 261 ANG--DSTNTSGMHSSGVSRGGSAFSASYNCQESPSSHIQP-----GLCGLGNLGNTCFM 313

Query: 288 NSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------------------------- 321
           NSA+QCL +T     YF +++Y  EIN  NPLGM                          
Sbjct: 314 NSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPR 373

Query: 322 ----------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVAD 359
                                 ELLAFLLDGLHEDLNRVK KPY++ KDA+GRPD  VA 
Sbjct: 374 MFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAK 433

Query: 360 EYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTV 419
           E W NH  RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL     R M V +
Sbjct: 434 EAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEVFL 493

Query: 420 FTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDP 477
             +D    P+ Y V VP  G   DL + L  +  +  +E + V ++ NH   +   +D+ 
Sbjct: 494 VPADPCCRPTQYRVVVPLMGAVSDLCEALSRLSGIA-AENMVVTDVYNHRFHKIFQMDE- 551

Query: 478 LISLSTIKDDDHLAAYRVPKLV---KKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVS 534
              L+ I   D +  Y V        + V L +  R ++  P +  T+S    YG PL+ 
Sbjct: 552 --GLNHIMPRDDIFVYEVCSTSADGSECVTLPVYFRERKSRPSS--TSSGAVLYGQPLLV 607

Query: 535 SISRDDVISSGKIQSTVQRMLSPFLKKESLMHADS--FDPSSMVTT-------------- 578
           S+ +  +      Q+  +R +S ++K+     + S   +P +   +              
Sbjct: 608 SVPKHKLTLESLYQAVCER-ISRYIKQPLPDESGSSPLEPGACNGSRGSCEGEDEEEMEH 666

Query: 579 --------VDPSGEAHSNSSSNIAKEDASSSKAVTLPN--LPLQLVDESNVCFDLSVEGD 628
                    D  G       ++  +      K  + P       LV+        S+  D
Sbjct: 667 QDEGREQLSDTEGSGEDELGNDCGETTQKKVKGQSCPKRLFTFSLVNSYGTADINSLATD 726

Query: 629 -KTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLE 687
            K +++ S ST   + +DW  +    Y         E   +    +K +   ++L  C+E
Sbjct: 727 GKLLKLNSRST---LAIDWDSETRSLYYDEQESEAYEKHVSMLQPQKKKKTAVALRDCIE 783

Query: 688 AFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVN 747
            F   E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + KL+T V 
Sbjct: 784 LFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVE 843

Query: 748 FPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHI 807
           FP+   N++++V +  S+R  +Y+L A++NHYG MG GHYTA+ K     +WY FDDS++
Sbjct: 844 FPVRALNMSEFVCDL-SARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNV 902

Query: 808 SPINEDDVKSAAAYVLFYRR 827
           S  +ED + + AAYVLFY+R
Sbjct: 903 SLASEDQIVTKAAYVLFYQR 922


>gi|74142121|dbj|BAE41120.1| unnamed protein product [Mus musculus]
          Length = 962

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 300/918 (32%), Positives = 442/918 (48%), Gaps = 128/918 (13%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 41  WFKQWKKYVGFD----SWDMYNVGEH--------NLFPGPIDNSGLFSDPESQ------T 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 83  LREHLIDELDYVLVPAEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 142

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T
Sbjct: 143 CENSDPTNVLS-CHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNT 201

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQD-NGFAEKKASSVLVEPSKSSLSIAGGWSA 233
           + DA +   Q +++E   N +GT  + S+Q  +  A  +  +   +PS S          
Sbjct: 202 IQDAGLYQGQVLVIEP-QNEDGTWPRQSLQSKSSTAPSRNFTTSSKPSASPYCSVSASLI 260

Query: 234 SKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQC 293
           + G S N SS + +S           +       +     GL GL NLGNTCFMNSA+QC
Sbjct: 261 ANGDSTN-SSGMHSSGVSRGGSGFSASYNCQEPPSPHIQPGLCGLGNLGNTCFMNSALQC 319

Query: 294 LVHTPEFARYF-REDYRREINWQNPLGMV------------------------------- 321
           L +T     YF +++Y  EIN  NPLGM                                
Sbjct: 320 LSNTAPLTEYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDTHVAPRMFKTQV 379

Query: 322 ----------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANH 365
                           ELLAF+LDGLHEDLNRVK KPY++ KDA+GRPD  VA E W NH
Sbjct: 380 GRFAPQFSGYQQQDSQELLAFILDGLHEDLNRVKKKPYLEPKDANGRPDAVVAKEAWENH 439

Query: 366 IARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGS 425
             RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL     R M V +  +D  
Sbjct: 440 RLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRIMEVFLVPADPQ 499

Query: 426 ALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTI 484
             P  Y VTVP  G   DL + L  +  +  +E + V ++ NH   + F  D  +S  T 
Sbjct: 500 CRPIQYRVTVPLMGAISDLCEALSKLSGIA-AENMVVTDVYNHRFHKIFQMDEGLSHITP 558

Query: 485 KDDDHLAAYRVPKLV---KKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDV 541
           +DD  +  Y V        + + L +  R ++  P +A + +    YG PL+ S+ +  +
Sbjct: 559 RDD--IFVYEVCNTSMDGSECITLPVYFREKKSRPSSASSGA--VLYGQPLLVSVPKHKL 614

Query: 542 ISSGKIQSTVQRMLSPFLKK--ESLMHADSFDPSS------------------------M 575
                 Q+   R +S ++K+       +   +P +                         
Sbjct: 615 TLESLYQAVCDR-ISRYIKQPLPDEFLSSPLEPGACNGSRGSYEGDEEEEMDHQEEGKEQ 673

Query: 576 VTTVDPSGE-----AHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGD-K 629
           ++ V+ SGE      HS S+  + K      +  T       LV+        S+  D K
Sbjct: 674 LSEVEGSGEDDQGDDHSESAQKV-KGQPRHKRLFT-----FSLVNSCGTADINSLATDGK 727

Query: 630 TIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAF 689
            +++ S ST   + +DW  +    Y         E   +    +K +   ++L  C+E F
Sbjct: 728 LLKLNSRST---LAIDWDSETRSLYFDEQESEACEKHLSMSQPQKKKKAAVALRECIELF 784

Query: 690 LREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFP 749
              E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + KL+T V FP
Sbjct: 785 TTMETLGEHDPWYCPTCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFP 844

Query: 750 IHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISP 809
           +   N++++V ++ S+R  +Y+L A++NHYG MG GHYTA+ K     +WY FDDS +S 
Sbjct: 845 VRALNMSEFVCDR-SARPYVYDLIAVSNHYGAMGVGHYTAYAKNRLNGKWYYFDDSSVSL 903

Query: 810 INEDDVKSAAAYVLFYRR 827
            +ED + + AAYVLFY+R
Sbjct: 904 ASEDQIVTKAAYVLFYQR 921


>gi|2655204|gb|AAC53587.1| ubiquitin-specific protease [Mus musculus]
          Length = 962

 Score =  411 bits (1056), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 301/918 (32%), Positives = 442/918 (48%), Gaps = 128/918 (13%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 41  WFKQWKKYVGFD----SWDMYNVGEH--------NLFPGPIDNSGLFSDPESQ------T 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 83  LKEHLIDELDYVLVPAEAWNKLLNWYGCVEGQQPIVRKVVDDGLFVKHCKVEVYLLELKL 142

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T
Sbjct: 143 CENSDPTNVLS-CHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNT 201

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQD-NGFAEKKASSVLVEPSKSSLSIAGGWSA 233
           + DA +   Q +++E   N +GT  + S+Q  +  A  +  +   +PS S          
Sbjct: 202 IQDAGLYQGQVLVIEP-QNEDGTWPRQSLQSKSSTAPSRNFTTSSKPSASPYCSVSASLI 260

Query: 234 SKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQC 293
           + G S N SS + +S           +       +     GL GL NLGNTCFMNSA+QC
Sbjct: 261 ANGDSTN-SSGMHSSGVSRGGSGFSASYNCQEPPSPHIQPGLCGLGNLGNTCFMNSALQC 319

Query: 294 LVHTPEFARYF-REDYRREINWQNPLGMV------------------------------- 321
           L +T     YF +++Y  EIN  NPLGM                                
Sbjct: 320 LSNTAPLTEYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDTHVAPRMFKTQV 379

Query: 322 ----------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANH 365
                           ELLAF+LDGLHEDLNRVK KPY++ KDA+GRPD  VA E W NH
Sbjct: 380 GRFAPQFSGYQQQDSQELLAFILDGLHEDLNRVKKKPYLEPKDANGRPDAVVAKEAWENH 439

Query: 366 IARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGS 425
             RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL     R M V +  +D  
Sbjct: 440 RLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRIMEVFLVPADPQ 499

Query: 426 ALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTI 484
             P  Y VTVP  G   DL + L  +  +  +E + V ++ NH   + F  D  +S  T 
Sbjct: 500 CRPIQYRVTVPLMGAISDLCEALSKLSGIA-AENMVVTDVYNHRFHKIFQMDEGLSHITP 558

Query: 485 KDDDHLAAYRVPKLV---KKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDV 541
           +DD  +  Y V        + + L +  R ++  P +A  +S    YG PL+ S+ +  +
Sbjct: 559 RDD--IFVYEVCNTSMDGSECITLPVYFREKKSRPSSA--SSGAVLYGQPLLVSVPKHKL 614

Query: 542 ISSGKIQSTVQRMLSPFLKK--ESLMHADSFDPSS------------------------M 575
                 Q+   R +S ++K+       +   +P +                         
Sbjct: 615 TLESLYQAVCDR-ISRYIKQPLPDEFLSSPLEPGACNGSRSSYEGDEEEEMDHQEEGKEQ 673

Query: 576 VTTVDPSGE-----AHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGD-K 629
           ++ V+ SGE      HS S+  + K      +  T       LV+        S+  D K
Sbjct: 674 LSEVEGSGEDDQGDDHSESAQKV-KGQPRHKRLFT-----FSLVNSCGTADINSLATDGK 727

Query: 630 TIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAF 689
            +++ S ST   + +DW  +    Y         E   +    +K +   ++L  C+E F
Sbjct: 728 LLKLNSRST---LAIDWDSETRSLYFDEQESEACEKHLSMSQPQKKKKAAVALRECIELF 784

Query: 690 LREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFP 749
              E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + KL+T V FP
Sbjct: 785 TTMETLGEHDPWYCPTCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFP 844

Query: 750 IHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISP 809
           +   N++++V ++ S+R  +Y+L A++NHYG MG GHYTA+ K     +WY FDDS +S 
Sbjct: 845 VRALNMSEFVCDR-SARPYVYDLIAVSNHYGAMGVGHYTAYAKNRLNGKWYYFDDSSVSL 903

Query: 810 INEDDVKSAAAYVLFYRR 827
            +ED + + AAYVLFY+R
Sbjct: 904 ASEDQIVTKAAYVLFYQR 921


>gi|42542785|gb|AAH66180.1| Usp4 protein, partial [Mus musculus]
 gi|45219741|gb|AAH66865.1| Usp4 protein, partial [Mus musculus]
          Length = 961

 Score =  410 bits (1055), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 301/918 (32%), Positives = 442/918 (48%), Gaps = 128/918 (13%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 40  WFKQWKKYVGFD----SWDMYNVGEH--------NLFPGPIDNSGLFSDPESQ------T 81

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 82  LKEHLIDELDYVLVPAEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 141

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T
Sbjct: 142 CENSDPTNVLS-CHFSKADTIATIEKEMRRLFNIPTERETRLWNKYMSNTYEQLSKLDNT 200

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQD-NGFAEKKASSVLVEPSKSSLSIAGGWSA 233
           + DA +   Q +++E   N +GT  + S+Q  +  A  +  +   +PS S          
Sbjct: 201 IQDAGLYQGQVLVIEP-QNEDGTWPRQSLQSKSSTAPSRNFTTSSKPSASPYCSVSASLI 259

Query: 234 SKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQC 293
           + G S N SS + +S           +       +     GL GL NLGNTCFMNSA+QC
Sbjct: 260 ANGDSTN-SSGMHSSGVSRGGSGFSASYNCQEPPSPHIQPGLCGLGNLGNTCFMNSALQC 318

Query: 294 LVHTPEFARYF-REDYRREINWQNPLGMV------------------------------- 321
           L +T     YF +++Y  EIN  NPLGM                                
Sbjct: 319 LSNTAPLTEYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDTHVAPRMFKTQV 378

Query: 322 ----------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANH 365
                           ELLAF+LDGLHEDLNRVK KPY++ KDA+GRPD  VA E W NH
Sbjct: 379 GRFAPQFSGYQQQDSQELLAFILDGLHEDLNRVKKKPYLEPKDANGRPDAVVAKEAWENH 438

Query: 366 IARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGS 425
             RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL     R M V +  +D  
Sbjct: 439 RLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRIMEVFLVPADPQ 498

Query: 426 ALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTI 484
             P  Y VTVP  G   DL + L  +  +  +E + V ++ NH   + F  D  +S  T 
Sbjct: 499 CRPIQYRVTVPLMGAISDLCEALSKLSGIA-AENMVVTDVYNHRFHKIFQMDEGLSHITP 557

Query: 485 KDDDHLAAYRVPKLV---KKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDV 541
           +DD  +  Y V        + + L +  R ++  P +A  +S    YG PL+ S+ +  +
Sbjct: 558 RDD--IFVYEVCNTSMDGSECITLPVYFREKKSRPSSA--SSGAVLYGQPLLVSVPKHKL 613

Query: 542 ISSGKIQSTVQRMLSPFLKK--ESLMHADSFDPSS------------------------M 575
                 Q+   R +S ++K+       +   +P +                         
Sbjct: 614 TLESLYQAVCDR-ISRYIKQPLPDEFLSSPLEPGACNGSRSSYEGDEEEEMDHQEEGKEQ 672

Query: 576 VTTVDPSGE-----AHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGD-K 629
           ++ V+ SGE      HS S+  + K      +  T       LV+        S+  D K
Sbjct: 673 LSEVEGSGEDDQGDDHSESAQKV-KGQPRHKRLFT-----FSLVNSCGTADINSLATDGK 726

Query: 630 TIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAF 689
            +++ S ST   + +DW  +    Y         E   +    +K +   ++L  C+E F
Sbjct: 727 LLKLNSRST---LAIDWDSETRSLYFDEQESEACEKHLSMSQPQKKKKAAVALRECIELF 783

Query: 690 LREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFP 749
              E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + KL+T V FP
Sbjct: 784 TTMETLGEHDPWYCPTCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFP 843

Query: 750 IHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISP 809
           +   N++++V ++ S+R  +Y+L A++NHYG MG GHYTA+ K     +WY FDDS +S 
Sbjct: 844 VGALNMSEFVCDR-SARPYVYDLIAVSNHYGAMGVGHYTAYAKNRLNGKWYYFDDSSVSL 902

Query: 810 INEDDVKSAAAYVLFYRR 827
            +ED + + AAYVLFY+R
Sbjct: 903 ASEDQIVTKAAYVLFYQR 920


>gi|348581460|ref|XP_003476495.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4-like [Cavia
           porcellus]
          Length = 932

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 302/936 (32%), Positives = 439/936 (46%), Gaps = 163/936 (17%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 9   WFKQWKKYVGFD----SWDMYNVGEH--------NLFPGPIDNSGLFSDPESQ------T 50

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKVI  GL   +  VEVY L L+L
Sbjct: 51  LKEHLIDELDYVLVPAEAWNKLLNWYGCVEGQQPIVRKVIEHGLFVKQCKVEVYLLELKL 110

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     +   SK +TI  + ++   +F +  E +  +W+ Y    +  ++ +D T+
Sbjct: 111 CENSDPTNVFSCHFSKADTIATIEKKMRKLFNIPAERETRLWNKYTSNTYEQLSKLDNTI 170

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E   N +GT  + ++Q                SKSS +    ++ S 
Sbjct: 171 QDAGLYQGQVLIIEP-QNEDGTWPRQTVQ----------------SKSSTAPTRNFTTSP 213

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASV------------------GLTG 277
             S +  S +S SP   +  DS N  G                             GL G
Sbjct: 214 KASASPCSSVSASP--VANGDSTNISGVHSSGISRGGSGFSALYNYQEPPSSHIQPGLCG 271

Query: 278 LLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV--------------- 321
           L NLGNTCFMNSA+QCL +T     YF +++Y  EIN  NPLGM                
Sbjct: 272 LGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMW 331

Query: 322 --------------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDA 349
                                           ELLAF+LDGLHEDLNRVK KPY+  KDA
Sbjct: 332 SGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFILDGLHEDLNRVKKKPYLLPKDA 391

Query: 350 DGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQA 409
           +GRPD  VA E W NH  RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL  
Sbjct: 392 NGRPDVVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPL 451

Query: 410 TTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHS 469
              R M V +  +D    P+ Y VTVP  G   DL + L  +  +  +E + V ++ NH 
Sbjct: 452 KKDRVMDVFLVPADPHCRPTQYRVTVPLMGAVSDLCEALSRLSGVA-AENMVVTDVYNHR 510

Query: 470 IQRF--LDDPLISLSTIKDDDHLAAYRVPKLV---KKAVFLQLIHRLQEQEPGAAQTTSQ 524
             +   +D+    LS I   D +  Y V        + + L +  R ++  P  A T+S 
Sbjct: 511 FHKIFQMDE---GLSHIMPRDDIFVYEVCSTSTDDSECITLPIYFRERKSRP--AGTSSG 565

Query: 525 WKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKK----------------------- 561
              YG PL+ SI +  +      Q+   R +S ++K+                       
Sbjct: 566 VVLYGQPLLVSIPKHKLTLESLYQTVCDR-ISRYIKQPLPDEFCSSPLEPGACNGSRGSC 624

Query: 562 -----ESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNL----PLQ 612
                E + H D           +P G A  +   + +  + +  K    P L       
Sbjct: 625 EGDDEEEMEHQD----EGKEELSEPEGTAEDSQGGDPS--ETTQKKVKGQPCLRRLFTFS 678

Query: 613 LVDESNVCFDLSVEGD-KTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPV 671
           LV+        S+  D K +++ S ST   + +DW  +    Y         E   +   
Sbjct: 679 LVNSYGTADINSLATDGKLLKLNSRST---LAIDWDTETRSLYYDEQESEAYEKHVSMVQ 735

Query: 672 TKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKR 731
             K +   ++L  C+E F   E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKR
Sbjct: 736 PPKKKKTSVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKR 795

Query: 732 FSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHI 791
           FSY+R  + KL+T V FP+   N++++V +  S++  +Y+L A++NHYG MG GHYTA+ 
Sbjct: 796 FSYNRYWRDKLDTVVEFPVRALNMSEFVCDP-SAQPYVYDLIAVSNHYGAMGVGHYTAYA 854

Query: 792 KLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           K     +WY FDDS++S  +ED + + AAYVLFY+R
Sbjct: 855 KNKFSGKWYYFDDSNVSLASEDQIVTKAAYVLFYQR 890


>gi|395852086|ref|XP_003798573.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15 isoform 2
           [Otolemur garnettii]
          Length = 952

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 308/937 (32%), Positives = 435/937 (46%), Gaps = 180/937 (19%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPRGECSTI---RISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDR 173
                G  S +   R SK +TI  + +    IF +  E +  +W+ Y       +N  D 
Sbjct: 139 C--ENGNMSNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDS 196

Query: 174 TLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSA 233
           T+ DA +   Q +++E               ++G   +  S+  V+ S   L     ++A
Sbjct: 197 TIQDAGLYQGQVLVIE------------QKNEDGTWPRGPSTPNVKNSNYCLP---SYTA 241

Query: 234 SKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQC 293
            K    +     +  P                        GL GL NLGNTCFMNSAIQC
Sbjct: 242 YKNYDYSEPGRNNEQP------------------------GLCGLSNLGNTCFMNSAIQC 277

Query: 294 LVHTPEFARYFRED-YRREINWQNPLGM-------------------------------- 320
           L +TP    YF  D Y+ E+N+ NPLGM                                
Sbjct: 278 LSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQV 337

Query: 321 ---------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANH 365
                           ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E W NH
Sbjct: 338 GRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENH 397

Query: 366 IARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGS 425
           + RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V +   D  
Sbjct: 398 LKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPL 457

Query: 426 ALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTI 484
           A P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R F  D  +S    
Sbjct: 458 AKPMQYKVVVPKIGNILDLCAALSALSGVP-ADKMIVTDIYNHRFHRIFAMDENLSSIME 516

Query: 485 KDDDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVIS 543
           +DD ++    + +    + V + +  R + +       T     +G P + ++ R++  +
Sbjct: 517 RDDIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGS-SLFGQPFLMAVPRNN--T 573

Query: 544 SGKIQSTVQRMLSPFLK--------------------------------KESLMHADSFD 571
             K+ + +   +  ++K                                  S M  D  D
Sbjct: 574 EDKLYNLLLLRMCRYVKISTDTEDTEGPPHCCKDQNINGNGPNGIHEEGSPSEMETDEPD 633

Query: 572 PSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEG---- 627
             S      PS   +S S  ++  ++ S +   T      QL       F          
Sbjct: 634 DESSQDQELPSENENSQSEDSVGGDNDSENGLCTEETCKGQLTGHKKRLFTFQFNNLGNT 693

Query: 628 ---------------DKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF-KNGPV 671
                          D+ +R+   S    + +DW  +L ++Y   F EN  E F K+  V
Sbjct: 694 DINYIKDDTRHIRFDDRQLRLDERS---FLALDWDPELKKRY---FDENAAEDFEKHESV 747

Query: 672 TKKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLK 730
             K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VLV+HLK
Sbjct: 748 EYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLK 807

Query: 731 RFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAH 790
           RFSYSR M+ KL+T V+FPI+D ++++++ N N+   + Y L A++NHYGGMG GHYTA 
Sbjct: 808 RFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGGHYTAF 866

Query: 791 IKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            K  D+ +WY FDDS +S  +E+ + S AAYVLFY+R
Sbjct: 867 AKNKDDGKWYYFDDSSVSTASEEQIVSKAAYVLFYQR 903


>gi|383409703|gb|AFH28065.1| ubiquitin carboxyl-terminal hydrolase 4 isoform b [Macaca mulatta]
 gi|384942172|gb|AFI34691.1| ubiquitin carboxyl-terminal hydrolase 4 isoform b [Macaca mulatta]
          Length = 916

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 302/919 (32%), Positives = 435/919 (47%), Gaps = 176/919 (19%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 41  WFKQWKKYVGFD----SWDMYNVGEH--------NLFPGPIDNSGLFSDPESQ------T 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 83  LKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 142

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T
Sbjct: 143 CENSDPTNVLS-CHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNT 201

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS 234
           + DA +   Q +++E   N +GT  + ++Q NG                      G+SAS
Sbjct: 202 VQDAGLYQGQVLVIEP-QNEDGTWPRQTLQSNG---------------------SGFSAS 239

Query: 235 KGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCL 294
                  SS I                            GL GL NLGNTCFMNSA+QCL
Sbjct: 240 YNYQEPPSSHIQP--------------------------GLCGLGNLGNTCFMNSALQCL 273

Query: 295 VHTPEFARYF-REDYRREINWQNPLGMV-------------------------------- 321
            +T     YF +++Y  EIN  NPLGM                                 
Sbjct: 274 SNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFKTQVG 333

Query: 322 ---------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHI 366
                          ELLAFLLDGLHEDLNRVK KPY++ KDA+GRPD  VA E W NH 
Sbjct: 334 RFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHR 393

Query: 367 ARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSA 426
            RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL     R M V +  +D   
Sbjct: 394 LRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEVFLVPADPHC 453

Query: 427 LPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTI 484
            P+ Y VTVP  G   DL + L  +C +  +E + VA++ NH   +   +D+    L+ I
Sbjct: 454 RPTQYRVTVPLMGAVSDLCEALSRLCGIA-AENMVVADVYNHRFHKIFQMDE---GLNHI 509

Query: 485 KDDDHLAAYRVPKL-VKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVIS 543
              D +  Y+V    V  +  + L    +E++   + T+S    YG PL+ S+ +  +  
Sbjct: 510 MPRDDIFVYQVCSTSVDGSECVTLPVYFRERKSRPSSTSSGSALYGQPLLLSVPKHKLTL 569

Query: 544 SGKIQSTVQRMLSPFLKKESLMHADSFDPSSM---------------------------- 575
               Q+   R +S ++K+      D F  S +                            
Sbjct: 570 ESLYQAVCDR-ISRYVKQPL---PDDFGSSPLEPGTCNGSRNSCEGEDEEEMEHQEEGKE 625

Query: 576 -VTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGD-KTIRI 633
            ++  + SGE    +      +     +          LV+        S+  D K +++
Sbjct: 626 QLSETEGSGEDELGNDPTKTTQKKIKGQPCPKRLFTFSLVNSYGTADINSLATDGKLLKL 685

Query: 634 PSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKN-----GPVTKKARTEPLSLYTCLEA 688
            S ST   + +DW     E  + ++ E   E ++       P  KK  T  ++L  C+E 
Sbjct: 686 NSRST---LAIDWDS---ETRSLYYDEQESEAYEKHVSMLQPQKKKKTT--VALRDCIEL 737

Query: 689 FLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNF 748
           F   E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + KL+T V F
Sbjct: 738 FTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEF 797

Query: 749 PIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHIS 808
           PI   N++++V N  S+R  +Y+L A++NHYG MG GHYTA+ K     +WY FDDS++S
Sbjct: 798 PIRGLNMSEFVCNP-SARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVS 856

Query: 809 PINEDDVKSAAAYVLFYRR 827
             +ED + + AAYVLFY+R
Sbjct: 857 LASEDQIVTKAAYVLFYQR 875


>gi|15030172|gb|AAH11341.1| Usp4 protein [Mus musculus]
          Length = 915

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 298/917 (32%), Positives = 438/917 (47%), Gaps = 173/917 (18%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 41  WFKQWKKYVGFD----SWDMYNVGEH--------NLFPGPIDNSGLFSDPESQ------T 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 83  LKEHLIDELDYVLVPAEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 142

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T
Sbjct: 143 CENSDPTNVLSC-HFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNT 201

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS 234
           + DA +   Q +++E   N +GT  + S+Q NG                      G+SAS
Sbjct: 202 IQDAGLYQGQVLVIEP-QNEDGTWPRQSLQSNG---------------------SGFSAS 239

Query: 235 KGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCL 294
                 ++ +   SP++                      GL GL NLGNTCFMNSA+QCL
Sbjct: 240 ------YNCQEPPSPHIQP--------------------GLCGLGNLGNTCFMNSALQCL 273

Query: 295 VHTPEFARYF-REDYRREINWQNPLGMV-------------------------------- 321
            +T     YF +++Y  EIN  NPLGM                                 
Sbjct: 274 SNTAPLTEYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDTHVAPRMFKTQVG 333

Query: 322 ---------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHI 366
                          ELLAF+LDGLHEDLNRVK KPY++ KDA+GRPD  VA E W NH 
Sbjct: 334 RFAPQFSGYQQQDSQELLAFILDGLHEDLNRVKKKPYLEPKDANGRPDAVVAKEAWENHR 393

Query: 367 ARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSA 426
            RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL     R M V +  +D   
Sbjct: 394 LRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRIMEVFLVPADPQC 453

Query: 427 LPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTIK 485
            P  Y VTVP  G   DL + L  +  +  +E + V ++ NH   + F  D  +S  T +
Sbjct: 454 RPIQYRVTVPLMGAISDLCEALSKLSGIA-AENMVVTDVYNHRFHKIFQMDEGLSHITPR 512

Query: 486 DDDHLAAYRVPKLV---KKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVI 542
           DD  +  Y V  +     + + L +  R ++  P +A + +    YG PL+ S+ +  + 
Sbjct: 513 DD--IFVYEVCNMSMDGSECITLPVYFREKKSRPSSASSGA--VLYGQPLLVSVPKHKLT 568

Query: 543 SSGKIQSTVQRMLSPFLKK--ESLMHADSFDPSS------------------------MV 576
                Q+   R +S ++K+       +   +P +                         +
Sbjct: 569 LESLYQAVCDR-ISRYIKQPLPDEFLSSPLEPGACNGSRSSYEGDEEEEMDHQEEGKEQL 627

Query: 577 TTVDPSGE-----AHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGD-KT 630
           + V+ SGE      HS S+  + K      +  T       LV+        S+  D K 
Sbjct: 628 SEVEGSGEDDQGDDHSESAQKV-KGQPRHKRLFT-----FSLVNSCGTADINSLATDGKL 681

Query: 631 IRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFL 690
           +++ S ST   + +DW  +    Y         E   +    +K +   ++L  C+E F 
Sbjct: 682 LKLNSRST---LAIDWDSETRSLYFDEQESEACEKHLSMSQPQKKKKAAVALRECIELFT 738

Query: 691 REEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPI 750
             E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + KL+T V FP+
Sbjct: 739 TMETLGEHDPWYCPTCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPV 798

Query: 751 HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPI 810
              N++++V ++ S+R  +Y+L A++NHYG MG GHYTA+ K     +WY FDDS +S  
Sbjct: 799 RALNMSEFVCDR-SARPYVYDLIAVSNHYGAMGVGHYTAYAKNRLNGKWYYFDDSSVSLA 857

Query: 811 NEDDVKSAAAYVLFYRR 827
           +ED + + AAYVLFY+R
Sbjct: 858 SEDQIVTKAAYVLFYQR 874


>gi|395852084|ref|XP_003798572.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15 isoform 1
           [Otolemur garnettii]
          Length = 981

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 312/944 (33%), Positives = 441/944 (46%), Gaps = 165/944 (17%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPRGECSTI---RISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDR 173
                G  S +   R SK +TI  + +    IF +  E +  +W+ Y       +N  D 
Sbjct: 139 C--ENGNMSNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDS 196

Query: 174 TLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSA 233
           T+ DA +   Q +++E   N +GT              +  S    P  S+ S     S 
Sbjct: 197 TIQDAGLYQGQVLVIEQ-KNEDGT------------WPRGPSTPKSPGASNFSTLPKISP 243

Query: 234 SKGTSRNHSSEISTS-------PNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCF 286
           S  ++  ++             P+  + ++ D     S         GL GL NLGNTCF
Sbjct: 244 SSLSNNYNNINNRNVKNSNYCLPSYTAYKNYD----YSEPGRNNEQPGLCGLSNLGNTCF 299

Query: 287 MNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM------------------------- 320
           MNSAIQCL +TP    YF  D Y+ E+N+ NPLGM                         
Sbjct: 300 MNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTP 359

Query: 321 ----------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVA 358
                                  ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA
Sbjct: 360 RAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVA 419

Query: 359 DEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVT 418
           +E W NH+ RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V 
Sbjct: 420 EEAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVY 479

Query: 419 VFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDP 477
           +   D  A P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R F  D 
Sbjct: 480 LVRMDPLAKPMQYKVVVPKIGNILDLCAALSALSGVP-ADKMIVTDIYNHRFHRIFAMDE 538

Query: 478 LISLSTIKDDDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSI 536
            +S    +DD ++    + +    + V + +  R + +       T     +G P + ++
Sbjct: 539 NLSSIMERDDIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGS-SLFGQPFLMAV 597

Query: 537 SRDDVISSGKIQSTVQRMLSPFLK--------------------------------KESL 564
            R++  +  K+ + +   +  ++K                                  S 
Sbjct: 598 PRNN--TEDKLYNLLLLRMCRYVKISTDTEDTEGPPHCCKDQNINGNGPNGIHEEGSPSE 655

Query: 565 MHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLS 624
           M  D  D  S      PS   +S S  ++  ++ S +   T      QL       F   
Sbjct: 656 METDEPDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEETCKGQLTGHKKRLFTFQ 715

Query: 625 VEG-------------------DKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEV 665
                                 D+ +R+   S    + +DW  +L ++Y   F EN  E 
Sbjct: 716 FNNLGNTDINYIKDDTRHIRFDDRQLRLDERS---FLALDWDPELKKRY---FDENAAED 769

Query: 666 F-KNGPVTKKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPE 723
           F K+  V  K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP 
Sbjct: 770 FEKHESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPP 829

Query: 724 VLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMG 783
           VLV+HLKRFSYSR M+ KL+T V+FPI+D ++++++ N N+   + Y L A++NHYGGMG
Sbjct: 830 VLVVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMG 888

Query: 784 SGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            GHYTA  K  D+ +WY FDDS +S  +E+ + S AAYVLFY+R
Sbjct: 889 GGHYTAFAKNKDDGKWYYFDDSSVSTASEEQIVSKAAYVLFYQR 932


>gi|344266305|ref|XP_003405221.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15 [Loxodonta
           africana]
          Length = 953

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 309/935 (33%), Positives = 430/935 (45%), Gaps = 176/935 (18%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E               ++G   +  S+  V+ S   L     ++A K
Sbjct: 199 QDAGLYQGQVLVIE------------QKNEDGTWPRGPSTPNVKNSNYCLP---SYTAYK 243

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
               +     +  P                        GL GL NLGNTCFMNSAIQCL 
Sbjct: 244 NYDYSEPGRNNEQP------------------------GLCGLSNLGNTCFMNSAIQCLS 279

Query: 296 HTPEFARYFRED-YRREINWQNPLGM---------------------------------- 320
           +TP    YF  D Y+ E+N+ NPLGM                                  
Sbjct: 280 NTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGR 339

Query: 321 -------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E W NH+ 
Sbjct: 340 FAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLK 399

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V +   D    
Sbjct: 400 RNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPHTK 459

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTIKD 486
           P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R F  D  +S    +D
Sbjct: 460 PMQYKVVVPKIGNISDLCTALSALSGVP-ADKMIVTDIYNHRFHRIFAMDENLSSIMERD 518

Query: 487 DDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSG 545
           D ++    V K    + V + +  R + +       T     +G P + ++ R++  +  
Sbjct: 519 DIYVFEINVNKTEDTEHVIIPVCLREKFRHSSYTHHTGS-SLFGQPFLMAVPRNN--TED 575

Query: 546 KIQSTVQRMLSPFLK--------------------------------KESLMHADSFDPS 573
           K+ + +   +  ++K                                  S M  D  D  
Sbjct: 576 KLYNLLLLRMCRYVKISTETEETEGSLHCCKDQNINGNGPNGIHEEGSPSEMETDEPDDE 635

Query: 574 SMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEG------ 627
           S      PS   +S S  ++  ++ S +   T      QL       F            
Sbjct: 636 SSQDQELPSENENSQSEDSVGGDNDSENGLCTEETCKGQLTGHKKRLFTFQFNNLGNTDI 695

Query: 628 -------------DKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF-KNGPVTK 673
                        D+ +R+   S    + +DW   L ++Y   F EN  E F K+  V  
Sbjct: 696 NYIKDDTRHIRFDDRQLRLDERS---FLALDWDPDLKKRY---FDENAAEDFEKHESVEY 749

Query: 674 KARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF 732
           K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VLV+HLKRF
Sbjct: 750 KPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRF 809

Query: 733 SYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIK 792
           SYSR M+ KL+T V+FPI D ++++++ N N+   + Y L A++NHYGGMG GHYTA  K
Sbjct: 810 SYSRYMRDKLDTLVDFPIIDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGGHYTAFAK 868

Query: 793 LLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 869 NKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 903


>gi|74228797|dbj|BAE21887.1| unnamed protein product [Mus musculus]
          Length = 952

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 311/936 (33%), Positives = 433/936 (46%), Gaps = 178/936 (19%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLEQIC-IWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E+   +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKEARLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E               ++G   +  S+  V+ S   L     ++A K
Sbjct: 199 QDAGLYQGQVLVIE------------QKNEDGTWPRGPSTPNVKNSNYCLP---SYTAYK 243

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
               +     +  P                        GL GL NLGNTCFMNSAIQCL 
Sbjct: 244 NYDYSEPGRNNEQP------------------------GLCGLSNLGNTCFMNSAIQCLS 279

Query: 296 HTPEFARYFRED-YRREINWQNPLGM---------------------------------- 320
           +TP    YF  D Y+ E+N+ NPLGM                                  
Sbjct: 280 NTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGR 339

Query: 321 -------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E W NH+ 
Sbjct: 340 FAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLK 399

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     R++ V +   D  A 
Sbjct: 400 RNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERSLEVYLVRMDPLAK 459

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTIKD 486
           P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R F  D   +LS+I +
Sbjct: 460 PMQYKVIVPKIGNILDLCTALSALSGVP-ADKMIVTDIYNHRFHRIFAVDE--NLSSIME 516

Query: 487 DDHLAAYRVPKLVKKA-----VFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDV 541
            D +  + +   + +A     V + +  R + +       T     +G P + +I R++ 
Sbjct: 517 RDDIYVFEIN--INRAEDTEHVVIPVCLREKFRHSSYTHHTGS-SLFGQPFLMAIPRNN- 572

Query: 542 ISSGKIQSTVQRMLSPFLK--------------------------------KESLMHADS 569
            +  K+ + +   +  ++K                                  S M  D 
Sbjct: 573 -TEDKLYNLLLLRMCRYVKMSTETEETDGHLRCCEDQNINGNGPNGLHEEGSPSEMETDE 631

Query: 570 FDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVE--G 627
            D  S      PS   +S S  ++  ++ S +   T      QL       F       G
Sbjct: 632 PDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEETCKGQLTGHKKRLFTFQFNNLG 691

Query: 628 DKTIRIPSSSTSIVVY--------------VDWSQKLLEKYNTHFLENLLEVF-KNGPVT 672
           +  I      TS + +              +DW   L ++Y   F EN  E F K+  V 
Sbjct: 692 NNDINYIKDDTSHIRFDDRQLRLDERSFLALDWDPDLKKRY---FDENAAEDFEKHESVE 748

Query: 673 KKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKR 731
            K    P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VLV+HLKR
Sbjct: 749 YKPPKRPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKR 808

Query: 732 FSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHI 791
           FSYSR M+ KL+T V+FPI D ++++++ N N+   + Y L A++NHYGGMG GHYTA  
Sbjct: 809 FSYSRYMRDKLDTLVDFPISDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGGHYTAFA 867

Query: 792 KLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           K  D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 868 KNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 903


>gi|11077995|gb|AAG28973.1|AF013990_1 ubiquitin C-terminal hydrolase [Homo sapiens]
          Length = 902

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 305/903 (33%), Positives = 425/903 (47%), Gaps = 170/903 (18%)

Query: 38  PSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLAR 94
           P  IDNS L+ D  A+       + + L++  DYILLP E WN+L SWY    G   +AR
Sbjct: 8   PGPIDNSGLLKDGDAQ------SLKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIAR 61

Query: 95  KVISSGLSQTELAVEVYPLRLQLLVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE- 152
           KV+  G+      VEVY   L+L          T R SK +TI  + +    IF +  E 
Sbjct: 62  KVVEQGMFVKHCKVEVYLTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEK 121

Query: 153 QICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKK 212
           +  +W+ Y       +N  D T+ DA +   Q +++E              Q N   E+K
Sbjct: 122 ETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIE--------------QKN---EQK 164

Query: 213 ASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGAS 272
                           G W     T    +S     P+  + ++ D     S        
Sbjct: 165 NED-------------GTWPRGPSTPNVKNSNYCL-PSYTAYKNYD----YSEPGRNNEQ 206

Query: 273 VGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM----------- 320
            GL GL NLGNTCFMNSAIQCL +TP    YF  D Y+ E+N+ NPLGM           
Sbjct: 207 PGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAEL 266

Query: 321 ------------------------------------VELLAFLLDGLHEDLNRVKHKPYI 344
                                                ELLAFLLDGLHEDLNR++ KPYI
Sbjct: 267 IKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYI 326

Query: 345 KSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLS 404
           + KDADGRPD+ VA+E W NH+ RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+
Sbjct: 327 QLKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLT 386

Query: 405 LPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAE 464
           LPL     RT+ V +   D    P  Y V VPK G   DL   L  +  +  ++++ V +
Sbjct: 387 LPLPMKKERTLEVYLVRMDPLTKPMQYKVVVPKIGNILDLCTALSALSGIP-ADKMIVTD 445

Query: 465 IQNHSIQRF--LDDPLISLSTIKDDDHLAAYRVPKLVKKA-----VFLQLIHRLQEQEPG 517
           I NH   R   +D+   +LS+I + D +  + +   + +A     V + +  R + +   
Sbjct: 446 IYNHRFHRIFAMDE---NLSSIMERDDIYVFEIN--INRAEDTEHVIIPVCLREKFRHSS 500

Query: 518 AAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLK----------------- 560
               T     +G P + ++ R++  +  K+ + +   +  ++K                 
Sbjct: 501 YTHHTGS-SLFGQPFLMAVPRNN--TEDKLYNLLLLRMCRYVKISTETEETEGSLHCCKD 557

Query: 561 ---------------KESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVT 605
                            S M  D  D  S      PS   +S S  ++  ++ S +   T
Sbjct: 558 QNINGNGPNGIHEEGSPSEMETDEPDDESSQDQELPSENENSQSEDSVGGDNDSENGLCT 617

Query: 606 LPNLPLQLVDESNVCFDLSVEG-------------------DKTIRIPSSSTSIVVYVDW 646
                 QL       F                         D+ +R+   S    + +DW
Sbjct: 618 EDTCKGQLTGHKKRLFTFQFNNLGNTDINYIKDDTRHIRFDDRQLRLDERS---FLALDW 674

Query: 647 SQKLLEKYNTHFLENLLEVF-KNGPVTKKARTEPL-SLYTCLEAFLREEPLVPEDMWYCP 704
              L ++Y   F EN  E F K+  V  K   +P   L  C+E F  +E L  ED WYCP
Sbjct: 675 DPDLKKRY---FDENAAEDFEKHESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCP 731

Query: 705 QCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNS 764
            CKE +QA+KKLDLW LP VLV+HLKRFSYSR M+ KL+T V+FPI+D ++++++ N N+
Sbjct: 732 NCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNA 791

Query: 765 SRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLF 824
              + Y L A++NHYGGMG GHYTA  K  D+ +WY FDDS +S  +ED + S AAYVLF
Sbjct: 792 GPCR-YNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLF 850

Query: 825 YRR 827
           Y+R
Sbjct: 851 YQR 853


>gi|28972259|dbj|BAC65583.1| mKIAA0529 protein [Mus musculus]
 gi|148692494|gb|EDL24441.1| ubiquitin specific peptidase 15, isoform CRA_c [Mus musculus]
          Length = 955

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 311/936 (33%), Positives = 433/936 (46%), Gaps = 178/936 (19%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 40  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------S 81

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 82  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 141

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLEQIC-IWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E+   +W+ Y       +N  D T+
Sbjct: 142 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKEARLWNKYMSNTFEPLNKPDSTI 201

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E               ++G   +  S+  V+ S   L     ++A K
Sbjct: 202 QDAGLYQGQVLVIE------------QKNEDGTWPRGPSTPNVKNSNYCLP---SYTAYK 246

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
               +     +  P                        GL GL NLGNTCFMNSAIQCL 
Sbjct: 247 NYDYSEPGRNNEQP------------------------GLCGLSNLGNTCFMNSAIQCLS 282

Query: 296 HTPEFARYFRED-YRREINWQNPLGM---------------------------------- 320
           +TP    YF  D Y+ E+N+ NPLGM                                  
Sbjct: 283 NTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGR 342

Query: 321 -------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E W NH+ 
Sbjct: 343 FAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLK 402

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     R++ V +   D  A 
Sbjct: 403 RNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERSLEVYLVRMDPLAK 462

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTIKD 486
           P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R F  D   +LS+I +
Sbjct: 463 PMQYKVIVPKIGNILDLCTALSALSGVP-ADKMIVTDIYNHRFHRIFAVDE--NLSSIME 519

Query: 487 DDHLAAYRVPKLVKKA-----VFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDV 541
            D +  + +   + +A     V + +  R + +       T     +G P + +I R++ 
Sbjct: 520 RDDIYVFEIN--INRAEDTEHVVIPVCLREKFRHSSYTHHTGS-SLFGQPFLMAIPRNN- 575

Query: 542 ISSGKIQSTVQRMLSPFLK--------------------------------KESLMHADS 569
            +  K+ + +   +  ++K                                  S M  D 
Sbjct: 576 -TEDKLYNLLLLRMCRYVKMSTETEETDGHLRCCEDQNINGNGPNGLHEEGSPSEMETDE 634

Query: 570 FDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVE--G 627
            D  S      PS   +S S  ++  ++ S +   T      QL       F       G
Sbjct: 635 PDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEETCKGQLTGHKKRLFTFQFNNLG 694

Query: 628 DKTIRIPSSSTSIVVY--------------VDWSQKLLEKYNTHFLENLLEVF-KNGPVT 672
           +  I      TS + +              +DW   L ++Y   F EN  E F K+  V 
Sbjct: 695 NNDINYIKDDTSHIRFDDRQLRLDERSFLALDWDPDLKKRY---FDENAAEDFEKHESVE 751

Query: 673 KKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKR 731
            K    P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VLV+HLKR
Sbjct: 752 YKPPKRPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKR 811

Query: 732 FSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHI 791
           FSYSR M+ KL+T V+FPI D ++++++ N N+   + Y L A++NHYGGMG GHYTA  
Sbjct: 812 FSYSRYMRDKLDTLVDFPISDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGGHYTAFA 870

Query: 792 KLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           K  D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 871 KNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 906


>gi|426023756|sp|F6Z5C0.2|UBP15_XENTR RecName: Full=Ubiquitin carboxyl-terminal hydrolase 15; AltName:
           Full=Deubiquitinating enzyme 15; AltName: Full=Ubiquitin
           thioesterase 15; AltName:
           Full=Ubiquitin-specific-processing protease 15
          Length = 982

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 315/940 (33%), Positives = 446/940 (47%), Gaps = 157/940 (16%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D   +       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDTDTQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY        +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYSVVESQQPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +   +IF +  E +  +W+ Y       +N  + T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDMIEKEMRTIFSIPDEKETRLWNKYMSNTFEPLNKPESTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E   N  G   + S+        K+S +   P+ S+L      S S 
Sbjct: 199 QDAGLYQGQMLVIEQ-KNQEGQWPRGSM-------PKSSGI---PNFSTLPKISPSSLSN 247

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
             +  +S  +  S     +  +      S         GL GL NLGNTCFMNSAIQCL 
Sbjct: 248 NYNNFNSRIMKNSNYCLPSYAAYKNYEYSEPGRHNEQPGLCGLSNLGNTCFMNSAIQCLS 307

Query: 296 HTPEFARYFRED-YRREINWQNPLGM---------------------------------- 320
           +TP    YF  D Y+ E+N  NPLGM                                  
Sbjct: 308 NTPPLTEYFLNDKYQDELNMDNPLGMRGEIAKSYAELIKQMWSGKYSYVTPRAFKTQVGR 367

Query: 321 -------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E W NHI 
Sbjct: 368 FAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHIK 427

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDSIIVD+  G +KSTLVCP C+K+SVTFDPF YL+LPL     R + V +   D  A 
Sbjct: 428 RNDSIIVDIFHGLFKSTLVCPECSKISVTFDPFCYLTLPLPMKKERALEVYLVRMDPLAK 487

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTIK 485
           P  Y V VPK G   DL   L ++  +   E++ V +I NH   R   +D+   +LS+I 
Sbjct: 488 PMQYKVIVPKIGNIMDLCTALSSLSGIA-PEKMVVTDIYNHRFHRIFAMDE---NLSSIM 543

Query: 486 DDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKA---YGTPLVSSISRDDVI 542
           + D +  +    + +     Q+I  +  +E     + S       +G P + ++ R+  I
Sbjct: 544 ERDDIYVFET-SINRTEDTEQVIIPVYLREKFRHTSYSHHHGSTLFGQPFLITVPRN--I 600

Query: 543 SSGKIQSTVQRMLSPFLK---------------KESLMHADSFD-------PSSMVTTVD 580
           +  K+ + +   +  ++K               KE  ++ +  +       PS M T  +
Sbjct: 601 TEDKLYNLLLLRMCRYVKATNDTEENDGSLHCNKEHTVNGNGPNGIHEEGSPSEMETD-E 659

Query: 581 PSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDK----TIRIPSS 636
           P  E+  +       E++ S  +V   N     +   + C   SV G K    T +  + 
Sbjct: 660 PDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTCKGQSVTGQKKRLFTFQFSNL 719

Query: 637 STSIVVYV------------------------DWSQKLLEKYNTHFLENLLEVFKNGPVT 672
            +S + Y+                        DW  KL +K+   F EN  E F+     
Sbjct: 720 GSSDITYIKDDTKYIRFDERQLRLDERSYLALDWDPKLKKKF---FDENAAEDFEKHESV 776

Query: 673 -----KKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVI 727
                KKA    + L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VLV+
Sbjct: 777 DFTPQKKAF---MKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVV 833

Query: 728 HLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHY 787
           HLKRFSYSR M+ KL+T V+FPI D +++ ++ N N+     Y L A++NHYGGMG GHY
Sbjct: 834 HLKRFSYSRYMRDKLDTLVDFPISDLDMSTFLINPNAG-PCCYNLIAVSNHYGGMGGGHY 892

Query: 788 TAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           TA  K  D+ +WY FDDS +S  +E+ + S AAYVLFY+R
Sbjct: 893 TAFAKNKDDGKWYYFDDSSVSTASEEQIVSKAAYVLFYQR 932


>gi|326911482|ref|XP_003202087.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform 1
           [Meleagris gallopavo]
          Length = 981

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 316/937 (33%), Positives = 444/937 (47%), Gaps = 152/937 (16%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D      G    
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKD------GDSQS 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNRLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPGEKETRLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS- 234
            DA +   Q +++E   N +GT              + SS    P  S+ S     S S 
Sbjct: 199 QDAGLYQGQVLVIEQ-KNEDGT------------WPRGSSTPKSPGASNFSTLPKISPSL 245

Query: 235 -KGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQC 293
               +  ++  +  S    S+  +      S         GL GL NLGNTCFMNSAIQC
Sbjct: 246 SNNYNNMNNRNVKNSNYCLSSYTAYKNYDYSEPGRHNEQPGLCGLSNLGNTCFMNSAIQC 305

Query: 294 LVHTPEFARYFRED-YRREINWQNPLGM-------------------------------- 320
           L +TP    YF  D Y+ E+N+ NPLGM                                
Sbjct: 306 LSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKYSYVTPRAFKTQV 365

Query: 321 ---------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANH 365
                           ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E W NH
Sbjct: 366 GRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENH 425

Query: 366 IARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGS 425
           + RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V +   D  
Sbjct: 426 LKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVFLVRMDPL 485

Query: 426 ALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLST 483
           A P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R   +D+   +LS+
Sbjct: 486 AKPMQYKVVVPKIGNILDLCTALSALSGVA-ADKMIVTDIYNHRFHRIFAMDE---NLSS 541

Query: 484 IKDDDHLAAYRVPKLVKKAVFLQLIHR--LQEQEPGAAQTTSQWKAYGTPLVSSISRDDV 541
           I + D +  + +  + +     Q+I    L+E+    + + S    +G P + ++ R++ 
Sbjct: 542 IMERDDIYVFEI-AINRTEDTEQVIIPVCLREKCRHTSYSHSGSSLFGQPFLIAVPRNN- 599

Query: 542 ISSGKIQSTVQRMLSPFLK---------------KE-----------------SLMHADS 569
            +  K+ + +   +  ++K               KE                 S M  D 
Sbjct: 600 -TEDKLYNLLLLRMCRYVKTCTETDDTEGSLRCCKEHGINGNGPNGIHEEGSPSEMETDE 658

Query: 570 FDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVT---LPNLPLQLVDESNVCFDLSVE 626
            D  S      PS   +S S  ++  ++ S +   T       PL    +    F  +  
Sbjct: 659 QDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTCKGQPLTGHKKRLFTFQFNNL 718

Query: 627 GDKTI--------------RIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF-KNGPV 671
           G+  I              R P       + +DW  +L ++Y   F ++  E F K+  V
Sbjct: 719 GNTDINYIKDDTRHIRFDDRQPRLDERSFLALDWDPELKKRY---FDDSAAEDFEKHESV 775

Query: 672 TKKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLK 730
             K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VLV+HLK
Sbjct: 776 EYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLK 835

Query: 731 RFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAH 790
           RFSYSR M+ KL+T V FPI+D ++++++ N N+   + Y L A++NHYGGMG GHYTA 
Sbjct: 836 RFSYSRYMRDKLDTLVGFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGGHYTAF 894

Query: 791 IKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            K  D+ +WY FDDS +S   ED + S AAYVLFY+R
Sbjct: 895 AKNKDDGKWYYFDDSSVSIACEDQIVSKAAYVLFYQR 931


>gi|224093933|ref|XP_002186882.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15 isoform 1
           [Taeniopygia guttata]
          Length = 981

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 314/941 (33%), Positives = 446/941 (47%), Gaps = 160/941 (17%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D      G    
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKD------GDSQS 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNRLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPGEKETRLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E   N +GT              +  S    P  S+ S     S S 
Sbjct: 199 QDAGLYQGQVLVIEQ-KNEDGT------------WPRGPSTPKSPGASNFSTLPKISPSL 245

Query: 236 GTSRNHSSEISTS------PNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNS 289
             + N+ +  +        P+  + ++ D     S         GL GL NLGNTCFMNS
Sbjct: 246 SNNYNNMNNRNVKNSNYCLPSYTAYKNYD----YSEPGRHNEQPGLCGLSNLGNTCFMNS 301

Query: 290 AIQCLVHTPEFARYFRED-YRREINWQNPLGM---------------------------- 320
           AIQCL +TP    YF  D Y+ E+N+ NPLGM                            
Sbjct: 302 AIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKYSYVTPRAF 361

Query: 321 -------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEY 361
                               ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E 
Sbjct: 362 KTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEA 421

Query: 362 WANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFT 421
           W NH+ RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V +  
Sbjct: 422 WENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLVR 481

Query: 422 SDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLI 479
            D  A P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R   +D+   
Sbjct: 482 MDPLAKPMQYKVVVPKIGNILDLCTALSALSGVA-ADKMIVTDIYNHRFHRIFGMDE--- 537

Query: 480 SLSTIKDDDHLAAYRVPKLVKKAVFLQLIHR--LQEQEPGAAQTTSQWKAYGTPLVSSIS 537
           +LS+I + D +  + +  + +     Q+I    L+E+    + + S    +G P + ++ 
Sbjct: 538 NLSSIMERDDIYVFEI-AINRTEDTEQVIIPVCLREKCRHTSYSHSGSLLFGQPFLIAVP 596

Query: 538 RDDVISSGKIQSTVQRMLSPFLK--------------------------------KESLM 565
           R++  +  K+ + +   +  ++K                                  S M
Sbjct: 597 RNN--TEDKLYNLLLLRMCRYVKTCTESEDTEGSLHCCKDHGINGNGPNGIHEEGSPSEM 654

Query: 566 HADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVT---LPNLPLQLVDESNVCFD 622
             D  D  S      PS   +S S  ++  ++ S +   T       PL    +    F 
Sbjct: 655 ETDEQDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTCKGQPLTGHKKRLFTFQ 714

Query: 623 LSVEGDKTI--------------RIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF-K 667
            +  G+  I              R P       + +DW  +L ++Y   F ++  E F K
Sbjct: 715 FNNLGNTDINYIKDDTRHIRFDDRQPRLDERSFLALDWDPELKKRY---FDDSAAEDFEK 771

Query: 668 NGPVTKKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLV 726
           +  V  K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VLV
Sbjct: 772 HESVEYKPSKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLV 831

Query: 727 IHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGH 786
           +HLKRFSYSR M+ KL+T V+FPI+D ++++++ N N+   + Y L A++NHYGGMG GH
Sbjct: 832 VHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGGH 890

Query: 787 YTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           YTA  K  D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 891 YTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 931


>gi|53759136|ref|NP_990171.2| ubiquitin carboxyl-terminal hydrolase 15 isoform 1 [Gallus gallus]
          Length = 981

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 317/941 (33%), Positives = 447/941 (47%), Gaps = 160/941 (17%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D      G    
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKD------GDSQS 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNRLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPGEKETRLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E   N +GT              + SS    P  S+ S     S S 
Sbjct: 199 QDAGLYQGQVLVIEQ-KNEDGT------------WPRGSSTPKSPGASNFSTLPKISPSL 245

Query: 236 GTSRNHSSEISTS------PNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNS 289
             + N+ +  +        P+  + ++ D     S         GL GL NLGNTCFMNS
Sbjct: 246 SNNYNNMNNRNVKNSNYCLPSYTAYKNYD----YSEPGRHNEQPGLCGLSNLGNTCFMNS 301

Query: 290 AIQCLVHTPEFARYFRED-YRREINWQNPLGM---------------------------- 320
           AIQCL +TP    YF  D Y+ E+N+ NPLGM                            
Sbjct: 302 AIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKYSYVTPRAF 361

Query: 321 -------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEY 361
                               ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E 
Sbjct: 362 KTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEA 421

Query: 362 WANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFT 421
           W NH+ RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V +  
Sbjct: 422 WENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVFLVR 481

Query: 422 SDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLI 479
            D  A P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R   +D+   
Sbjct: 482 MDPLAKPMQYKVVVPKIGNILDLCTALSALSGVA-ADKMIVTDIYNHRFHRIFAMDE--- 537

Query: 480 SLSTIKDDDHLAAYRVPKLVKKAVFLQLIHR--LQEQEPGAAQTTSQWKAYGTPLVSSIS 537
           +LS+I + D +  + +  + +     Q+I    L+E+    + + S    +G P + ++ 
Sbjct: 538 NLSSIMERDDIYVFEI-AINRTEDTEQVIIPVCLREKCRHTSYSHSGSSLFGQPFLIAVP 596

Query: 538 RDDVISSGKIQSTVQRMLSPFLK---------------KE-----------------SLM 565
           R++  +  K+ + +   +  ++K               KE                 S M
Sbjct: 597 RNN--TEDKLYNLLLLRMCRYVKTCTETDDSEGSLRCCKEHGINGNGPNGIHEEGSPSEM 654

Query: 566 HADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVT---LPNLPLQLVDESNVCFD 622
             D  D  S      PS   +S S  ++  ++ S +   T       PL    +    F 
Sbjct: 655 ETDEQDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTCKGQPLTGHKKRLFTFQ 714

Query: 623 LSVEGDKTI--------------RIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF-K 667
            +  G+  I              R P       + +DW  +L ++Y   F ++  E F K
Sbjct: 715 FNNLGNTDINYIKDDTRHIRFDDRQPRLDERSFLALDWDPELKKRY---FDDSAAEDFEK 771

Query: 668 NGPVTKKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLV 726
           +  V  K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VLV
Sbjct: 772 HESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLV 831

Query: 727 IHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGH 786
           +HLKRFSYSR M+ KL+T V FPI+D ++++++ N N+   + Y L A++NHYGGMG GH
Sbjct: 832 VHLKRFSYSRYMRDKLDTLVGFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGGH 890

Query: 787 YTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           YTA  K  D+ +WY FDDS +S   ED + S AAYVLFY+R
Sbjct: 891 YTAFAKNKDDGKWYYFDDSSVSIACEDQIVSKAAYVLFYQR 931


>gi|291389465|ref|XP_002711347.1| PREDICTED: ubiquitin specific peptidase 15 isoform 1 [Oryctolagus
           cuniculus]
          Length = 952

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 307/935 (32%), Positives = 432/935 (46%), Gaps = 176/935 (18%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E               ++G   +  S+  V+ S   L     ++A K
Sbjct: 199 QDAGLYQGQVLVIE------------QKNEDGTWPRGPSTPNVKNSNYCLP---SYTAYK 243

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
               +     +  P                        GL GL NLGNTCFMNSAIQCL 
Sbjct: 244 NYDYSEPGRNNEQP------------------------GLCGLSNLGNTCFMNSAIQCLS 279

Query: 296 HTPEFARYFRED-YRREINWQNPLGM---------------------------------- 320
           +TP    YF  D Y+ E+N+ NPLGM                                  
Sbjct: 280 NTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGR 339

Query: 321 -------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E W NH+ 
Sbjct: 340 FAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLK 399

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V +   D    
Sbjct: 400 RNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPLTK 459

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTIKD 486
           P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R F  D  +S    +D
Sbjct: 460 PMQYKVIVPKIGNILDLCTALSALSGV-SADKMIVTDIYNHRFHRIFAMDENLSSIMERD 518

Query: 487 DDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSG 545
           D ++    + +    + V + +  R + +       T     +G P + ++ R++  +  
Sbjct: 519 DIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGS-SLFGQPFLMAVPRNN--TED 575

Query: 546 KIQSTVQRMLSPFLK--------------------------------KESLMHADSFDPS 573
           K+ + +   +  ++K                                  S M  D  D  
Sbjct: 576 KLYNLLLLRMCRYVKISTETEETEGSLHCCKDQNINGNGPNGIHEEGSPSEMETDEPDDE 635

Query: 574 SMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEG------ 627
           S      PS   +S S  ++  ++ S +   T      QL       F            
Sbjct: 636 SSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTCKGQLTGHKKRLFTFQFNNLGNTDI 695

Query: 628 -------------DKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF-KNGPVTK 673
                        D+ +R+   S    + +DW  +L ++Y   F EN  E F K+  V  
Sbjct: 696 NYIKDDTRHIRFDDRQLRLDERS---FLALDWDPELKKRY---FDENAAEDFEKHESVEY 749

Query: 674 KARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF 732
           K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VLV+HLKRF
Sbjct: 750 KPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRF 809

Query: 733 SYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIK 792
           SYSR M+ KL+T V+FPI+D ++++++ N N+   + Y L A++NHYGGMG GHYTA  K
Sbjct: 810 SYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGGHYTAFAK 868

Query: 793 LLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 869 NKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 903


>gi|296212206|ref|XP_002752723.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15 isoform 2
           [Callithrix jacchus]
          Length = 952

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 307/935 (32%), Positives = 431/935 (46%), Gaps = 176/935 (18%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E               ++G   +  S+  V+ S   L     ++A K
Sbjct: 199 QDAGLYQGQVLVIE------------QKNEDGTWPRGPSTPNVKNSNYCLP---SYTAYK 243

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
               +     +  P                        GL GL NLGNTCFMNSAIQCL 
Sbjct: 244 NYDYSEPGRNNEQP------------------------GLCGLSNLGNTCFMNSAIQCLS 279

Query: 296 HTPEFARYFRED-YRREINWQNPLGM---------------------------------- 320
           +TP    YF  D Y+ E+N+ NPLGM                                  
Sbjct: 280 NTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGR 339

Query: 321 -------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E W NH+ 
Sbjct: 340 FAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLK 399

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V +   D    
Sbjct: 400 RNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPLTK 459

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTIKD 486
           P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R F  D  +S    +D
Sbjct: 460 PMQYKVVVPKIGNILDLCTALSALSGIP-ADKMIVTDIYNHRFHRIFAMDENLSSIMERD 518

Query: 487 DDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSG 545
           D ++    + +    + V + +  R + +       T     +G P + ++ R++  +  
Sbjct: 519 DIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGS-SLFGQPFLMAVPRNN--TED 575

Query: 546 KIQSTVQRMLSPFLK--------------------------------KESLMHADSFDPS 573
           K+ + +   +  ++K                                  S M  D  D  
Sbjct: 576 KLYNLLLLRMCRYVKISTETEETEGSLHSCKDQNINGNGPNGIHEEGSPSEMETDEPDDE 635

Query: 574 SMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEG------ 627
           S      PS   +S S  ++  ++ S +   T      QL       F            
Sbjct: 636 SSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTCKGQLTGHKKRLFTFQFNNLGNTDI 695

Query: 628 -------------DKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF-KNGPVTK 673
                        D+ +R+   S    + +DW   L ++Y   F EN  E F K+  V  
Sbjct: 696 NYIKDDTRHIRFDDRQLRLDERS---FLALDWDPDLKKRY---FDENAAEDFEKHESVEY 749

Query: 674 KARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF 732
           K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VLV+HLKRF
Sbjct: 750 KPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRF 809

Query: 733 SYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIK 792
           SYSR M+ KL+T V+FPI+D ++++++ N N+   + Y L A++NHYGGMG GHYTA  K
Sbjct: 810 SYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGGHYTAFAK 868

Query: 793 LLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 869 NKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 903


>gi|355559641|gb|EHH16369.1| hypothetical protein EGK_11640 [Macaca mulatta]
 gi|380788769|gb|AFE66260.1| ubiquitin carboxyl-terminal hydrolase 4 isoform a [Macaca mulatta]
 gi|383409701|gb|AFH28064.1| ubiquitin carboxyl-terminal hydrolase 4 isoform a [Macaca mulatta]
 gi|384942170|gb|AFI34690.1| ubiquitin carboxyl-terminal hydrolase 4 isoform a [Macaca mulatta]
          Length = 963

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 312/926 (33%), Positives = 449/926 (48%), Gaps = 143/926 (15%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 41  WFKQWKKYVGFD----SWDMYNVGEH--------NLFPGPIDNSGLFSDPESQ------T 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 83  LKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 142

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T
Sbjct: 143 CENSDPTNVLS-CHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNT 201

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDN-------GFAEKKASSVLVEPSKSSLSI 227
           + DA +   Q +++E   N +GT  + ++Q          F     SS     S S+  I
Sbjct: 202 VQDAGLYQGQVLVIEP-QNEDGTWPRQTLQSKSSTAPSRNFTTSPKSSASPYSSVSASPI 260

Query: 228 AGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFM 287
           A G S S  T   HSS +S   +  SA  +     SS +       GL GL NLGNTCFM
Sbjct: 261 ANGDSTS--TCGMHSSGVSRGGSGFSASYNYQEPPSSHIQP-----GLCGLGNLGNTCFM 313

Query: 288 NSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------------------------- 321
           NSA+QCL +T     YF +++Y  EIN  NPLGM                          
Sbjct: 314 NSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPR 373

Query: 322 ----------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVAD 359
                                 ELLAFLLDGLHEDLNRVK KPY++ KDA+GRPD  VA 
Sbjct: 374 MFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAK 433

Query: 360 EYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTV 419
           E W NH  RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL     R M V +
Sbjct: 434 EAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEVFL 493

Query: 420 FTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDP 477
             +D    P+ Y VTVP  G   DL + L  +C +  +E + VA++ NH   +   +D+ 
Sbjct: 494 VPADPHCRPTQYRVTVPLMGAVSDLCEALSRLCGIA-AENMVVADVYNHRFHKIFQMDE- 551

Query: 478 LISLSTIKDDDHLAAYRVPKL-VKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSI 536
              L+ I   D +  Y+V    V  +  + L    +E++   + T+S    YG PL+ S+
Sbjct: 552 --GLNHIMPRDDIFVYQVCSTSVDGSECVTLPVYFRERKSRPSSTSSGSALYGQPLLLSV 609

Query: 537 SRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSM--------------------- 575
            +  +      Q+   R +S ++K+      D F  S +                     
Sbjct: 610 PKHKLTLESLYQAVCDR-ISRYVKQPL---PDDFGSSPLEPGTCNGSRNSCEGEDEEEME 665

Query: 576 --------VTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEG 627
                   ++  + SGE    +      +     +          LV+        S+  
Sbjct: 666 HQEEGKEQLSETEGSGEDELGNDPTKTTQKKIKGQPCPKRLFTFSLVNSYGTADINSLAT 725

Query: 628 D-KTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKN-----GPVTKKARTEPLS 681
           D K +++ S ST   + +DW     E  + ++ E   E ++       P  KK  T  ++
Sbjct: 726 DGKLLKLNSRST---LAIDWDS---ETRSLYYDEQESEAYEKHVSMLQPQKKKKTT--VA 777

Query: 682 LYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHK 741
           L  C+E F   E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + K
Sbjct: 778 LRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDK 837

Query: 742 LETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYN 801
           L+T V FPI   N++++V N  S+R  +Y+L A++NHYG MG GHYTA+ K     +WY 
Sbjct: 838 LDTVVEFPIRGLNMSEFVCNP-SARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYY 896

Query: 802 FDDSHISPINEDDVKSAAAYVLFYRR 827
           FDDS++S  +ED + + AAYVLFY+R
Sbjct: 897 FDDSNVSLASEDQIVTKAAYVLFYQR 922


>gi|403269028|ref|XP_003926560.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15 isoform 2
           [Saimiri boliviensis boliviensis]
          Length = 952

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 307/935 (32%), Positives = 431/935 (46%), Gaps = 176/935 (18%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E               ++G   +  S+  V+ S   L     ++A K
Sbjct: 199 QDAGLYQGQVLVIE------------QKNEDGTWPRGPSTPNVKNSNYCLP---SYTAYK 243

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
               +     +  P                        GL GL NLGNTCFMNSAIQCL 
Sbjct: 244 NYDYSEPGRNNEQP------------------------GLCGLSNLGNTCFMNSAIQCLS 279

Query: 296 HTPEFARYFRED-YRREINWQNPLGM---------------------------------- 320
           +TP    YF  D Y+ E+N+ NPLGM                                  
Sbjct: 280 NTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGR 339

Query: 321 -------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E W NH+ 
Sbjct: 340 FAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLK 399

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V +   D    
Sbjct: 400 RNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPLTK 459

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTIKD 486
           P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R F  D  +S    +D
Sbjct: 460 PMQYKVVVPKIGNILDLCTALSALSGIP-ADKMIVTDIYNHRFHRIFAMDENLSSIMERD 518

Query: 487 DDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSG 545
           D ++    + +    + V + +  R + +       T     +G P + ++ R++  +  
Sbjct: 519 DIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGS-SLFGQPFLMAVPRNN--TED 575

Query: 546 KIQSTVQRMLSPFLK--------------------------------KESLMHADSFDPS 573
           K+ + +   +  ++K                                  S M  D  D  
Sbjct: 576 KLYNLLLLRMCRYVKISTETEETEGSLHCCKDQNINGNGPNGIHEEGSPSEMETDEPDDE 635

Query: 574 SMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEG------ 627
           S      PS   +S S  ++  ++ S +   T      QL       F            
Sbjct: 636 SSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTCKGQLTGHKKRLFTFQFNNLGNTDI 695

Query: 628 -------------DKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF-KNGPVTK 673
                        D+ +R+   S    + +DW   L ++Y   F EN  E F K+  V  
Sbjct: 696 NYIKDDTRHIRFDDRQLRLDERS---FLALDWDPDLKKRY---FDENAAEDFEKHESVEY 749

Query: 674 KARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF 732
           K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VLV+HLKRF
Sbjct: 750 KPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRF 809

Query: 733 SYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIK 792
           SYSR M+ KL+T V+FPI+D ++++++ N N+   + Y L A++NHYGGMG GHYTA  K
Sbjct: 810 SYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGGHYTAFAK 868

Query: 793 LLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 869 NKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 903


>gi|350584211|ref|XP_003126389.3| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15 isoform 1 [Sus
           scrofa]
          Length = 952

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 307/935 (32%), Positives = 431/935 (46%), Gaps = 176/935 (18%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E               ++G   +  S+  V+ S   L     ++A K
Sbjct: 199 QDAGLYQGQVLVIE------------QKNEDGTWPRGPSTPNVKNSNYCLP---SYTAYK 243

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
               +     +  P                        GL GL NLGNTCFMNSAIQCL 
Sbjct: 244 NYDYSEPGRNNEQP------------------------GLCGLSNLGNTCFMNSAIQCLS 279

Query: 296 HTPEFARYFRED-YRREINWQNPLGM---------------------------------- 320
           +TP    YF  D Y+ E+N+ NPLGM                                  
Sbjct: 280 NTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGR 339

Query: 321 -------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E W NH+ 
Sbjct: 340 FAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLK 399

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V +   D    
Sbjct: 400 RNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPLTK 459

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTIKD 486
           P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R F  D  +S    +D
Sbjct: 460 PMQYKVVVPKIGNILDLCTALSTLSGVP-ADKMIVTDIYNHRFHRIFAMDENLSSIMERD 518

Query: 487 DDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSG 545
           D ++    + +    + V + +  R + +       T     +G P + ++ R++  +  
Sbjct: 519 DIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGS-SLFGQPFLMAVPRNN--TED 575

Query: 546 KIQSTVQRMLSPFLK--------------------------------KESLMHADSFDPS 573
           K+ + +   +  ++K                                  S M  D  D  
Sbjct: 576 KLYNLLLVRMCRYVKISTETEETEGSLHCCKDQNINGNGPNGIHEEGSPSEMETDEPDDE 635

Query: 574 SMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEG------ 627
           S      PS   +S S  ++  ++ S +   T      QL       F            
Sbjct: 636 SSQDQELPSENENSQSEDSVGGDNDSENGLCTEETCKGQLTGHKKRLFTFQFNNLGNTDI 695

Query: 628 -------------DKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF-KNGPVTK 673
                        D+ +R+   S    + +DW   L ++Y   F EN  E F K+  V  
Sbjct: 696 NYIKDDTRHIRFDDRQLRLDERS---FLALDWDPDLKKRY---FDENAAEDFEKHESVEY 749

Query: 674 KARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF 732
           K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VLV+HLKRF
Sbjct: 750 KPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRF 809

Query: 733 SYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIK 792
           SYSR M+ KL+T V+FPI+D ++++++ N N+   + Y L A++NHYGGMG GHYTA  K
Sbjct: 810 SYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGGHYTAFAK 868

Query: 793 LLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 869 NKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 903


>gi|14149627|ref|NP_006304.1| ubiquitin carboxyl-terminal hydrolase 15 isoform 2 [Homo sapiens]
 gi|388454557|ref|NP_001253886.1| ubiquitin carboxyl-terminal hydrolase 15 [Macaca mulatta]
 gi|5814097|gb|AAD52099.1|AF106069_1 deubiquitinating enzyme [Homo sapiens]
 gi|20521071|dbj|BAA25455.2| KIAA0529 protein [Homo sapiens]
 gi|119617512|gb|EAW97106.1| ubiquitin specific peptidase 15, isoform CRA_c [Homo sapiens]
 gi|168267398|dbj|BAG09755.1| ubiquitin carboxyl-terminal hydrolase 15 [synthetic construct]
 gi|380785461|gb|AFE64606.1| ubiquitin carboxyl-terminal hydrolase 15 isoform 2 [Macaca mulatta]
          Length = 952

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 307/935 (32%), Positives = 431/935 (46%), Gaps = 176/935 (18%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E               ++G   +  S+  V+ S   L     ++A K
Sbjct: 199 QDAGLYQGQVLVIE------------QKNEDGTWPRGPSTPNVKNSNYCLP---SYTAYK 243

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
               +     +  P                        GL GL NLGNTCFMNSAIQCL 
Sbjct: 244 NYDYSEPGRNNEQP------------------------GLCGLSNLGNTCFMNSAIQCLS 279

Query: 296 HTPEFARYFRED-YRREINWQNPLGM---------------------------------- 320
           +TP    YF  D Y+ E+N+ NPLGM                                  
Sbjct: 280 NTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGR 339

Query: 321 -------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E W NH+ 
Sbjct: 340 FAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLK 399

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V +   D    
Sbjct: 400 RNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPLTK 459

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTIKD 486
           P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R F  D  +S    +D
Sbjct: 460 PMQYKVVVPKIGNILDLCTALSALSGIP-ADKMIVTDIYNHRFHRIFAMDENLSSIMERD 518

Query: 487 DDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSG 545
           D ++    + +    + V + +  R + +       T     +G P + ++ R++  +  
Sbjct: 519 DIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGS-SLFGQPFLMAVPRNN--TED 575

Query: 546 KIQSTVQRMLSPFLK--------------------------------KESLMHADSFDPS 573
           K+ + +   +  ++K                                  S M  D  D  
Sbjct: 576 KLYNLLLLRMCRYVKISTETEETEGSLHCCKDQNINGNGPNGIHEEGSPSEMETDEPDDE 635

Query: 574 SMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEG------ 627
           S      PS   +S S  ++  ++ S +   T      QL       F            
Sbjct: 636 SSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTCKGQLTGHKKRLFTFQFNNLGNTDI 695

Query: 628 -------------DKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF-KNGPVTK 673
                        D+ +R+   S    + +DW   L ++Y   F EN  E F K+  V  
Sbjct: 696 NYIKDDTRHIRFDDRQLRLDERS---FLALDWDPDLKKRY---FDENAAEDFEKHESVEY 749

Query: 674 KARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF 732
           K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VLV+HLKRF
Sbjct: 750 KPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRF 809

Query: 733 SYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIK 792
           SYSR M+ KL+T V+FPI+D ++++++ N N+   + Y L A++NHYGGMG GHYTA  K
Sbjct: 810 SYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGGHYTAFAK 868

Query: 793 LLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 869 NKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 903


>gi|147899880|ref|NP_001082452.1| ubiquitin specific peptidase 4 (proto-oncogene) [Xenopus laevis]
 gi|84570095|gb|AAI10726.1| LOC398480 protein [Xenopus laevis]
          Length = 975

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 308/915 (33%), Positives = 454/915 (49%), Gaps = 128/915 (13%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G S L             P  +DNS L  D   +       
Sbjct: 65  WFKQWKKYVGFDAWDVYNVGESSL------------YPGPVDNSGLFPDPDTQ------V 106

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E W +L +WYG   G   + RKV+  GL      VEVY + L+L
Sbjct: 107 LKEHLIDELDYVLVPTEAWQKLMNWYGSVEGQHPIVRKVVEHGLFVKNCKVEVYLIELKL 166

Query: 118 LVMPRGECSTIR-ISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                 E    R  SK +TI  + +   +IF ++ E +  +W+ Y    +  +   + T+
Sbjct: 167 CDDSDPENVITRHFSKADTIDTIEKEMRNIFNISAETETRLWNRYMTNTYEQLTKKESTV 226

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q I +E   N +GT  + S   +  A  +  +   +PS SS S +   S + 
Sbjct: 227 QDAGLYQGQMIAIEKR-NADGTWPRQSQTKSSTATSRTFATSGKPSTSSYSTSSS-SMTN 284

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
           G S  H+   S+  N      S ++      +++    GL GL NLGNTCFMNSA+QCL 
Sbjct: 285 GDSSTHALNNSSGLNKGGYTPSYSSYSYRESSSQP---GLCGLSNLGNTCFMNSALQCLS 341

Query: 296 HTPEFARYFRED-YRREINWQNPLGMV--------------------------------- 321
           ++P   RYF  D Y++EIN +NPLGM                                  
Sbjct: 342 NSPPLTRYFLTDEYKKEINRENPLGMKGEIAVAYAELIRQIWSGDHSYVAPRMFKTQVGR 401

Query: 322 --------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELLAFLLDGLHEDLNRVK KPY++ KDA+GRPD  VA E W NH+ 
Sbjct: 402 FAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDSIVAAEAWENHLR 461

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RN+SIIVD+  G +KSTLVCP C+KVSVTFDPF YL+LPL     RTM V    SD    
Sbjct: 462 RNNSIIVDIFHGLFKSTLVCPECHKVSVTFDPFCYLTLPLPMKKDRTMEVFFVRSDPHCK 521

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTIKD 486
           P  Y +TVPK G   DL   L  I  + Q+E + V ++ NH   + F  D +  LS I +
Sbjct: 522 PKQYRLTVPKMGVVLDLCSALSKISDV-QAENMVVTDVYNHRFHKIFQMDEM--LSHIME 578

Query: 487 DDHLAAYRV-PKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRD----DV 541
            D +  Y V P+  +  V L +  R +      +  T     +G PL+ S+ +     D+
Sbjct: 579 RDDIFVYEVKPRKAEDWVTLPICFRERRYRQATSTGTV---LFGQPLMISVPKHNLTLDI 635

Query: 542 ISSGKIQSTVQRMLSPFLKKESLMHADSF----------DPSSMVTTVDPSGEAHSNSSS 591
           +    +    + + +P  +  + +  DS           D            +  +N  S
Sbjct: 636 LYENVLDRIKRYVKNPHPELYTCLSTDSEACNGSNGECDDEMDHQEEDQEESQEETNGQS 695

Query: 592 NIAKEDASSSKAVTLPN-LPLQLVDESNVCFDLS-VEGDKTIRIPSS--------STSIV 641
           + + E+ +S    +  N +P + ++     F  S V    T  + S         S+   
Sbjct: 696 DESVEEENSEGGCSPCNKMPKKALECRKRLFTFSLVNSYATAEVGSMPAKGYLKLSSFAT 755

Query: 642 VYVDW---SQKLL------EKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLRE 692
           V +DW   S+KL       E ++ H  E++++     P  KK     ++L  C++ F + 
Sbjct: 756 VAIDWDSESKKLFYDDQEAEAFDKH--ESMMQ-----PQKKKVT---VALRECIQLFTKT 805

Query: 693 EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHD 752
           E L   D WYCP CK+ ++A+KK DLW LP++LV+HLKRFSY+R  + KL+  V FPI D
Sbjct: 806 ETLGEHDPWYCPNCKKHQRATKKFDLWSLPKILVVHLKRFSYNRFWRDKLDAVVEFPIRD 865

Query: 753 FNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINE 812
            N++++V +  +    +Y+L A+++HYGGMG GHYTA+ K  D+++WY FDDS +SP +E
Sbjct: 866 LNMSEFVCDPQAGPF-VYDLVAVSDHYGGMGGGHYTAYAKNQDKDQWYYFDDSSVSPASE 924

Query: 813 DDVKSAAAYVLFYRR 827
           D + + AAYVLFY+R
Sbjct: 925 DQIVTKAAYVLFYQR 939


>gi|114644048|ref|XP_001166420.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15 isoform 5 [Pan
           troglodytes]
 gi|297692323|ref|XP_002823510.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15 isoform 2
           [Pongo abelii]
 gi|397508880|ref|XP_003824867.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15 isoform 2 [Pan
           paniscus]
 gi|410211580|gb|JAA03009.1| ubiquitin specific peptidase 15 [Pan troglodytes]
 gi|410254952|gb|JAA15443.1| ubiquitin specific peptidase 15 [Pan troglodytes]
 gi|410300136|gb|JAA28668.1| ubiquitin specific peptidase 15 [Pan troglodytes]
          Length = 952

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 307/935 (32%), Positives = 431/935 (46%), Gaps = 176/935 (18%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E               ++G   +  S+  V+ S   L     ++A K
Sbjct: 199 QDAGLYQGQVLVIE------------QKNEDGTWPRGPSTPNVKNSNYCLP---SYTAYK 243

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
               +     +  P                        GL GL NLGNTCFMNSAIQCL 
Sbjct: 244 NYDYSEPGRNNEQP------------------------GLCGLSNLGNTCFMNSAIQCLS 279

Query: 296 HTPEFARYFRED-YRREINWQNPLGM---------------------------------- 320
           +TP    YF  D Y+ E+N+ NPLGM                                  
Sbjct: 280 NTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGR 339

Query: 321 -------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E W NH+ 
Sbjct: 340 FAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLK 399

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V +   D    
Sbjct: 400 RNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPLTK 459

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTIKD 486
           P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R F  D  +S    +D
Sbjct: 460 PMQYKVVVPKIGNILDLCTALSALSGIP-ADKMIVTDIYNHRFHRIFAMDENLSSIMERD 518

Query: 487 DDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSG 545
           D ++    + +    + V + +  R + +       T     +G P + ++ R++  +  
Sbjct: 519 DIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGS-SLFGQPFLMAVPRNN--TED 575

Query: 546 KIQSTVQRMLSPFLK--------------------------------KESLMHADSFDPS 573
           K+ + +   +  ++K                                  S M  D  D  
Sbjct: 576 KLYNLLLLRMCRYVKISTETEETEGSLHCCKDQNINGNGPNGIHEEGSPSEMETDEPDDE 635

Query: 574 SMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEG------ 627
           S      PS   +S S  ++  ++ S +   T      QL       F            
Sbjct: 636 SSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTCKGQLTGHKKRLFTFQFNNLGNTDI 695

Query: 628 -------------DKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF-KNGPVTK 673
                        D+ +R+   S    + +DW   L ++Y   F EN  E F K+  V  
Sbjct: 696 NYIKDDTRHIRFDDRQLRLDERS---FLALDWDPDLKKRY---FDENAAEDFEKHESVEY 749

Query: 674 KARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF 732
           K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VLV+HLKRF
Sbjct: 750 KPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRF 809

Query: 733 SYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIK 792
           SYSR M+ KL+T V+FPI+D ++++++ N N+   + Y L A++NHYGGMG GHYTA  K
Sbjct: 810 SYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGGHYTAFAK 868

Query: 793 LLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 869 NKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 903


>gi|21489969|ref|NP_081880.2| ubiquitin carboxyl-terminal hydrolase 15 [Mus musculus]
 gi|28558361|sp|Q8R5H1.1|UBP15_MOUSE RecName: Full=Ubiquitin carboxyl-terminal hydrolase 15; AltName:
           Full=Deubiquitinating enzyme 15; AltName: Full=Ubiquitin
           thioesterase 15; AltName:
           Full=Ubiquitin-specific-processing protease 15
 gi|18653399|gb|AAL77418.1|AF468037_1 deubiquitinating enzyme Usp15 [Mus musculus]
 gi|74217049|dbj|BAE26626.1| unnamed protein product [Mus musculus]
 gi|148692492|gb|EDL24439.1| ubiquitin specific peptidase 15, isoform CRA_a [Mus musculus]
          Length = 981

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 314/944 (33%), Positives = 439/944 (46%), Gaps = 165/944 (17%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLEQIC-IWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E+   +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKEARLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E   N +GT              +  S    P  S+ S     S S 
Sbjct: 199 QDAGLYQGQVLVIEQ-KNEDGT------------WPRGPSTPKSPGASNFSTLPKISPSS 245

Query: 236 GTSRNHSSEISTS-------PNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMN 288
            ++  ++             P+  + ++ D     S         GL GL NLGNTCFMN
Sbjct: 246 LSNNYNNINNRNVKNSNYCLPSYTAYKNYD----YSEPGRNNEQPGLCGLSNLGNTCFMN 301

Query: 289 SAIQCLVHTPEFARYFRED-YRREINWQNPLGM--------------------------- 320
           SAIQCL +TP    YF  D Y+ E+N+ NPLGM                           
Sbjct: 302 SAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRA 361

Query: 321 --------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADE 360
                                ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E
Sbjct: 362 FKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEE 421

Query: 361 YWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVF 420
            W NH+ RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     R++ V + 
Sbjct: 422 AWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERSLEVYLV 481

Query: 421 TSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFL--DDPL 478
             D  A P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R    D+  
Sbjct: 482 RMDPLAKPMQYKVIVPKIGNILDLCTALSALSGVP-ADKMIVTDIYNHRFHRIFAVDE-- 538

Query: 479 ISLSTIKDDDHLAAYRVPKLVKKA-----VFLQLIHRLQEQEPGAAQTTSQWKAYGTPLV 533
            +LS+I + D +  + +   + +A     V + +  R + +       T     +G P +
Sbjct: 539 -NLSSIMERDDIYVFEIN--INRAEDTEHVVIPVCLREKFRHSSYTHHTGS-SLFGQPFL 594

Query: 534 SSISRDDVISSGKIQSTVQRMLSPFLK--------------------------------K 561
            +I R++  +  K+ + +   +  ++K                                 
Sbjct: 595 MAIPRNN--TEDKLYNLLLLRMCRYVKMSTETEETDGHLRCCEDQNINGNGPNGLHEEGS 652

Query: 562 ESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCF 621
            S M  D  D  S      PS   +S S  ++  ++ S +   T      QL       F
Sbjct: 653 PSEMETDEPDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEETCKGQLTGHKKRLF 712

Query: 622 DLSVE--GDKTIRIPSSSTSIVVY--------------VDWSQKLLEKYNTHFLENLLEV 665
                  G+  I      TS + +              +DW   L ++Y   F EN  E 
Sbjct: 713 TFQFNNLGNNDINYIKDDTSHIRFDDRQLRLDERSFLALDWDPDLKKRY---FDENAAED 769

Query: 666 F-KNGPVTKKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPE 723
           F K+  V  K    P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP 
Sbjct: 770 FEKHESVEYKPPKRPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPP 829

Query: 724 VLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMG 783
           VLV+HLKRFSYSR M+ KL+T V+FPI D ++++++ N N+   + Y L A++NHYGGMG
Sbjct: 830 VLVVHLKRFSYSRYMRDKLDTLVDFPISDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMG 888

Query: 784 SGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            GHYTA  K  D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 889 GGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 932


>gi|148689334|gb|EDL21281.1| ubiquitin specific peptidase 4 (proto-oncogene), isoform CRA_a [Mus
           musculus]
          Length = 915

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 298/917 (32%), Positives = 437/917 (47%), Gaps = 173/917 (18%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 41  WFKQWKKYVGFD----SWDMYNVGEH--------NLFPGPIDNSGLFSDPESQ------T 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 83  LKEHLIDELDYVLVPAEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 142

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T
Sbjct: 143 CENSDPTNVLS-CHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNT 201

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS 234
           + DA +   Q +++E   N +GT  + S+Q NG                      G+SAS
Sbjct: 202 IQDAGLYQGQVLVIEP-QNEDGTWPRQSLQSNG---------------------SGFSAS 239

Query: 235 KGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCL 294
                 ++ +   SP++                      GL GL NLGNTCFMNSA+QCL
Sbjct: 240 ------YNCQEPPSPHIQP--------------------GLCGLGNLGNTCFMNSALQCL 273

Query: 295 VHTPEFARYF-REDYRREINWQNPLGMV-------------------------------- 321
            +T     YF +++Y  EIN  NPLGM                                 
Sbjct: 274 SNTAPLTEYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDTHVAPRMFKTQVG 333

Query: 322 ---------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHI 366
                          ELLAF+LDGLHEDLNRVK KPY++ KDA+GRPD  VA E W NH 
Sbjct: 334 RFAPQFSGYQQQDSQELLAFILDGLHEDLNRVKKKPYLEPKDANGRPDAVVAKEAWENHR 393

Query: 367 ARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSA 426
            RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL     R M V +  +D   
Sbjct: 394 LRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRIMEVFLVPADPQC 453

Query: 427 LPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTIK 485
            P  Y VTVP  G   DL + L  +  +  +E + V ++ NH   + F  D  +S  T +
Sbjct: 454 RPIQYRVTVPLMGAISDLCEALSKLSGIA-AENMVVTDVYNHRFHKIFQMDEGLSHITPR 512

Query: 486 DDDHLAAYRVPKLV---KKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVI 542
           DD  +  Y V        + + L +  R ++  P +A + +    YG PL+ S+ +  + 
Sbjct: 513 DD--IFVYEVCNTSMDGSECITLPVYFREKKSRPSSASSGA--VLYGQPLLVSVPKHKLT 568

Query: 543 SSGKIQSTVQRMLSPFLKK--ESLMHADSFDPSS------------------------MV 576
                Q+   R +S ++K+       +   +P +                         +
Sbjct: 569 LESLYQAVCDR-ISRYIKQPLPDEFLSSPLEPGACNGSRSSYEGDEEEEMDHQEEGKEQL 627

Query: 577 TTVDPSGE-----AHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGD-KT 630
           + V+ SGE      HS S+  + K      +  T       LV+        S+  D K 
Sbjct: 628 SEVEGSGEDDQGDDHSESAQKV-KGQPRHKRLFT-----FSLVNSCGTADINSLATDGKL 681

Query: 631 IRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFL 690
           +++ S ST   + +DW  +    Y         E   +    +K +   ++L  C+E F 
Sbjct: 682 LKLNSRST---LAIDWDSETRSLYFDEQESEACEKHLSMSQPQKKKKAAVALRECIELFT 738

Query: 691 REEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPI 750
             E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + KL+T V FP+
Sbjct: 739 TMETLGEHDPWYCPTCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPV 798

Query: 751 HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPI 810
              N++++V ++ S+R  +Y+L A++NHYG MG GHYTA+ K     +WY FDDS +S  
Sbjct: 799 RALNMSEFVCDR-SARPYVYDLIAVSNHYGAMGVGHYTAYAKNRLNGKWYYFDDSSVSLA 857

Query: 811 NEDDVKSAAAYVLFYRR 827
           +ED + + AAYVLFY+R
Sbjct: 858 SEDQIVTKAAYVLFYQR 874


>gi|115527977|gb|AAI25124.1| Ubiquitin specific peptidase 15 [Homo sapiens]
          Length = 952

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 306/929 (32%), Positives = 430/929 (46%), Gaps = 164/929 (17%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E               ++G   +  S+  V+ S   L     ++A K
Sbjct: 199 QDAGLYQGQVLVIE------------QKNEDGTWPRGPSTPNVKNSNYCLP---SYTAYK 243

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
               +     +  P                        GL GL NLGNTCFMNSAIQCL 
Sbjct: 244 NYDYSEPGRNNEQP------------------------GLCGLSNLGNTCFMNSAIQCLS 279

Query: 296 HTPEFARYFRED-YRREINWQNPLGM---------------------------------- 320
           +TP    YF  D Y+ E+N+ NPLGM                                  
Sbjct: 280 NTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGR 339

Query: 321 -------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E W NH+ 
Sbjct: 340 FAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLK 399

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V +   D    
Sbjct: 400 RNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPLTK 459

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTIKD 486
           P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R F  D  +S    +D
Sbjct: 460 PMQYKVVVPKIGNILDLCTALSALSGIP-ADKMIVTDIYNHRFHRIFAMDENLSSIMERD 518

Query: 487 DDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSG 545
           D ++    + +    + V + +  R + +       T     +G P + ++ R++  +  
Sbjct: 519 DIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGS-SLFGQPFLMAVPRNN--TED 575

Query: 546 KIQSTVQRMLSPFLK--------------------------------KESLMHADSFDPS 573
           K+ + +   +  ++K                                  S M  D  D  
Sbjct: 576 KLYNLLLLRMCRYVKISTETEETEGSLHCCKDQNINGNGPNGIHEEGSPSEMETDEPDDE 635

Query: 574 SMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVE--GDKTI 631
           S      PS   +S S  ++  ++ S +   T      QL       F       G+  I
Sbjct: 636 SSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTCKGQLTGHKKRLFTFQFNNLGNTDI 695

Query: 632 RIPSSSTSIVVYVDWSQKLLEKY-----------NTHFLENLLEVF-KNGPVTKKARTEP 679
                 T  + + D   +L E++             +F EN  E F K+  V  K   +P
Sbjct: 696 NYIKDDTRHIRFDDRQLRLDERFFLALDWDPDLKKRYFDENAAEDFEKHESVEYKPPKKP 755

Query: 680 L-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM 738
              L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VLV+HLKRFSYSR M
Sbjct: 756 FVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYM 815

Query: 739 KHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR 798
           + KL+T V+FPI+D ++++++ N N+   + Y L A++NHYGGMG GHYTA  K  D+ +
Sbjct: 816 RDKLDTLVDFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGGHYTAFAKNKDDGK 874

Query: 799 WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 875 WYYFDDSSVSTASEDQIVSKAAYVLFYQR 903


>gi|350584209|ref|XP_003481694.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15 isoform 2 [Sus
           scrofa]
          Length = 981

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 311/942 (33%), Positives = 437/942 (46%), Gaps = 161/942 (17%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E   N +GT              +  S    P  S+ S     S S 
Sbjct: 199 QDAGLYQGQVLVIEQ-KNEDGT------------WPRGPSTPKSPGASNFSTLPKISPSS 245

Query: 236 GTSRNHSSEISTS-------PNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMN 288
            ++  ++             P+  + ++ D     S         GL GL NLGNTCFMN
Sbjct: 246 LSNNYNNINNRNVKNSNYCLPSYTAYKNYD----YSEPGRNNEQPGLCGLSNLGNTCFMN 301

Query: 289 SAIQCLVHTPEFARYFRED-YRREINWQNPLGM--------------------------- 320
           SAIQCL +TP    YF  D Y+ E+N+ NPLGM                           
Sbjct: 302 SAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRA 361

Query: 321 --------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADE 360
                                ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E
Sbjct: 362 FKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEE 421

Query: 361 YWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVF 420
            W NH+ RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V + 
Sbjct: 422 AWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLV 481

Query: 421 TSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLI 479
             D    P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R F  D  +
Sbjct: 482 RMDPLTKPMQYKVVVPKIGNILDLCTALSTLSGVP-ADKMIVTDIYNHRFHRIFAMDENL 540

Query: 480 SLSTIKDDDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISR 538
           S    +DD ++    + +    + V + +  R + +       T     +G P + ++ R
Sbjct: 541 SSIMERDDIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGS-SLFGQPFLMAVPR 599

Query: 539 DDVISSGKIQSTVQRMLSPFLK--------------------------------KESLMH 566
           ++  +  K+ + +   +  ++K                                  S M 
Sbjct: 600 NN--TEDKLYNLLLVRMCRYVKISTETEETEGSLHCCKDQNINGNGPNGIHEEGSPSEME 657

Query: 567 ADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVE 626
            D  D  S      PS   +S S  ++  ++ S +   T      QL       F     
Sbjct: 658 TDEPDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEETCKGQLTGHKKRLFTFQFN 717

Query: 627 G-------------------DKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF- 666
                               D+ +R+   S    + +DW   L ++Y   F EN  E F 
Sbjct: 718 NLGNTDINYIKDDTRHIRFDDRQLRLDERS---FLALDWDPDLKKRY---FDENAAEDFE 771

Query: 667 KNGPVTKKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVL 725
           K+  V  K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VL
Sbjct: 772 KHESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVL 831

Query: 726 VIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSG 785
           V+HLKRFSYSR M+ KL+T V+FPI+D ++++++ N N+   + Y L A++NHYGGMG G
Sbjct: 832 VVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGG 890

Query: 786 HYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           HYTA  K  D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 891 HYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 932


>gi|126339078|ref|XP_001363243.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15 isoform 1
           [Monodelphis domestica]
          Length = 983

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 313/945 (33%), Positives = 447/945 (47%), Gaps = 166/945 (17%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E   N +GT              +  S    P  S+ S     S S 
Sbjct: 199 QDAGLYQGQMLVIEQ-KNEDGT------------WPRGPSTPKSPGASNFSTLPKISPSS 245

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGAS---VGLTGLLNLGNTCFMNSAIQ 292
            ++  ++       N      S  T  +   +  G +    GL GL NLGNTCFMNSAIQ
Sbjct: 246 LSNNYNNINNRNVKNSNYCLPSYTTYKNYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQ 305

Query: 293 CLVHTPEFARYFRED-YRREINWQNPLGM------------------------------- 320
           CL +TP    YF  D Y+ E+N+ NPLGM                               
Sbjct: 306 CLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKYSYVTPRAFKTQ 365

Query: 321 ----------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWAN 364
                            ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E W N
Sbjct: 366 VGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWEN 425

Query: 365 HIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDG 424
           H+ RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V +   D 
Sbjct: 426 HLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDP 485

Query: 425 SALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLS 482
              P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R   +D+ L S+ 
Sbjct: 486 LTKPMQYKVVVPKIGNILDLCTALSTLSGVP-ADKMIVTDIYNHRFHRIFAMDENLNSIM 544

Query: 483 TIKDDDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDV 541
             +DD ++    + +    + V + +  R + +  G +  +     +G P + ++ R++ 
Sbjct: 545 E-RDDIYVFEITINRTEDTEQVIIPVCLREKYRHTGYSHHSGS-SLFGQPFLMAVPRNN- 601

Query: 542 ISSGKIQSTVQRMLSPFLKKE--------------------------------SLMHADS 569
            +  K+ + +   +  ++K                                  S M  D 
Sbjct: 602 -TEEKLYNLLLLRMCRYVKTSTETEETEGSLHYCKDQNINGNGPNGIHEECSPSEMETDE 660

Query: 570 FDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLV--------------- 614
            D  S      PS   +S S  ++  ++ S +   T      QL+               
Sbjct: 661 PDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEETCKGQLLMGHKKRLFTFQFNNL 720

Query: 615 ----------DESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLE 664
                     D  ++ FD     D+ +R+   S    + +DW  +L ++Y   F +N  E
Sbjct: 721 GNTDINYIKDDTRHIRFD-----DRQLRLDERS---FLALDWDPELKKRY---FDDNAAE 769

Query: 665 VF-KNGPVTKKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLP 722
            F K+  V  K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP
Sbjct: 770 DFEKHESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLP 829

Query: 723 EVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGM 782
            VLV+HLKRFSYSR M+ KL+T V+FPI+D ++++++ N N+   + Y L A++NHYGGM
Sbjct: 830 PVLVVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGM 888

Query: 783 GSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           G GHYTA  K  D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 889 GGGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 933


>gi|431913420|gb|ELK15095.1| Ubiquitin carboxyl-terminal hydrolase 4 [Pteropus alecto]
          Length = 964

 Score =  407 bits (1047), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 304/919 (33%), Positives = 440/919 (47%), Gaps = 129/919 (14%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 41  WFKQWKKYVGFD----SWDMYNVGEH--------NLFPGPIDNSGLFSDPESQ------T 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 83  LKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 142

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T
Sbjct: 143 CENSDPTNVLS-CHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNT 201

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNG-------FAEKKASSVLVEPSKSSLSI 227
           + DA +   Q +++E   N +GT  + ++Q          F     SS     S S+  I
Sbjct: 202 VQDAGLYQGQVLVIEP-QNEDGTWPRQTLQSKSSTAPSRNFTTSPKSSASPYSSVSASPI 260

Query: 228 AGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFM 287
           A G   S  TS  HSS +S   +  SA  +     SS +       G+ GL NLGNTCFM
Sbjct: 261 ANG--DSTNTSGMHSSGVSRGGSGFSASYNCQESPSSHIQP-----GVCGLGNLGNTCFM 313

Query: 288 NSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------------------------- 321
           NSA+QCL +T     YF +++Y  EIN  NPLGM                          
Sbjct: 314 NSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPR 373

Query: 322 ----------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVAD 359
                                 ELLAFLLDGLHEDLNRVK KPY++ KDA GRPD  VA 
Sbjct: 374 MFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDASGRPDAVVAK 433

Query: 360 EYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTV 419
           E W NH  RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL     R M V +
Sbjct: 434 EAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEVFL 493

Query: 420 FTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDP 477
            ++D    P+ Y V VP  G   DL + L  +  +  +E + V ++ NH   +   +D+ 
Sbjct: 494 VSADPRCRPTQYRVIVPLMGAMSDLCEALSRLSGIA-AENMVVTDVYNHRFHKIFQMDE- 551

Query: 478 LISLSTIKDDDHLAAYRVPKL-VKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSI 536
              L+ I   D +  Y V    V  +  + L    +E++   + T+S    YG PL+ S+
Sbjct: 552 --GLNHIMPRDDIFVYEVCSTSVDGSECVTLPVYFREKKSRPSSTSSGALLYGQPLLVSV 609

Query: 537 SRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTT------------------ 578
            +  +      Q+  +R +S ++K + L       P  + T                   
Sbjct: 610 PKHKLTLESLYQAVCER-ISRYIK-QPLPEESGSSPVELGTCNGSRGSCEGEDEEEMEHQ 667

Query: 579 ---------VDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGD- 628
                     + SGE    S      +     +          LV+        S+  D 
Sbjct: 668 EEGKEQLSETEGSGEDEPGSDHGETTQKKIGGRPCAKKLFTFSLVNSYGTADINSLATDG 727

Query: 629 KTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEA 688
           K +++ S ST   + +DW  +    Y         E   +    +K +   ++L  C+E 
Sbjct: 728 KLLKLNSRST---LAIDWDSETRSLYYDEQESEAYEKHVSMLQPQKKKKTAMALRDCIEL 784

Query: 689 FLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNF 748
           F   E L  +D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSYSR  + KL+T V F
Sbjct: 785 FTTMETLGEQDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYSRYWRDKLDTVVEF 844

Query: 749 PIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHIS 808
           P+   N++++V +  S+R  +Y+L A++NHYG MG GHYTA+ K     +WY FDDS++S
Sbjct: 845 PVRGLNMSEFVCDL-SARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVS 903

Query: 809 PINEDDVKSAAAYVLFYRR 827
             +ED + + AAYVLFY+R
Sbjct: 904 LASEDQIVTKAAYVLFYQR 922


>gi|149066660|gb|EDM16533.1| ubiquitin specific peptidase 15, isoform CRA_b [Rattus norvegicus]
          Length = 952

 Score =  407 bits (1047), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 308/933 (33%), Positives = 428/933 (45%), Gaps = 172/933 (18%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLEQIC-IWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E+   +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKEARLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E               ++G   +  S+  V+ S   L     ++A K
Sbjct: 199 QDAGLYQGQVLVIE------------QKNEDGTWPRGPSAPNVKNSNYCLP---SYTAYK 243

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
               +     +  P                        GL GL NLGNTCFMNSAIQCL 
Sbjct: 244 NYDYSEPGRNNEQP------------------------GLCGLSNLGNTCFMNSAIQCLS 279

Query: 296 HTPEFARYFRED-YRREINWQNPLGM---------------------------------- 320
           +TP    YF  D Y+ E+N+ NPLGM                                  
Sbjct: 280 NTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGR 339

Query: 321 -------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E W NH+ 
Sbjct: 340 FAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLK 399

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     R++ V +   D  A 
Sbjct: 400 RNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERSLEVYLVRMDPLAK 459

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTIKD 486
           P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R F  D  +S    +D
Sbjct: 460 PMQYKVIVPKIGNILDLCTALSALSGVP-ADKMIVTDIYNHRFHRIFAMDENLSSIMERD 518

Query: 487 DDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDD----- 540
           D ++    + +    + V + +  R + +       T     +G P + ++ R++     
Sbjct: 519 DIYVFEININRTEDTEHVVIPVCLREKFRHSSYTHHTGS-SLFGQPFLMAVPRNNTEDKL 577

Query: 541 -------VISSGKIQSTVQRMLSPFLKKE------------------SLMHADSFDPSSM 575
                  +    K+ +  +    P    E                  S M  D  D  S 
Sbjct: 578 YNLLLLRMCRYVKMSTETEETDGPLRCCEDQNINGNGPNGIHEEGSPSEMETDEPDDESS 637

Query: 576 VTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEG-------- 627
                PS   +S S  ++  ++ S +   T      QL       F              
Sbjct: 638 QDQELPSENENSQSEDSVGGDNDSENGLCTEETCKGQLTGHKKRLFTFQFNNLGNTDINY 697

Query: 628 -----------DKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF-KNGPVTKKA 675
                      D+ +R+   S    + +DW   L ++Y   F EN  E F K+  V  K 
Sbjct: 698 IKDDTRHIRFDDRQLRLDERS---FLALDWDPDLKKRY---FDENAAEDFEKHESVEYKP 751

Query: 676 RTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
              P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VLV+HLKRFSY
Sbjct: 752 PKRPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSY 811

Query: 735 SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
           SR M+ KL+T V+FPI D ++++++ N N+   + Y L A++NHYGGMG GHYTA  K  
Sbjct: 812 SRYMRDKLDTLVDFPISDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGGHYTAFAKNK 870

Query: 795 DENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 871 DDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 903


>gi|291389467|ref|XP_002711348.1| PREDICTED: ubiquitin specific peptidase 15 isoform 2 [Oryctolagus
           cuniculus]
          Length = 981

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 311/942 (33%), Positives = 438/942 (46%), Gaps = 161/942 (17%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E   N +GT              +  S    P  S+ S     S S 
Sbjct: 199 QDAGLYQGQVLVIEQ-KNEDGT------------WPRGPSTPKSPGASNFSTLPKISPSS 245

Query: 236 GTSRNHSSEISTS-------PNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMN 288
            ++  ++             P+  + ++ D     S         GL GL NLGNTCFMN
Sbjct: 246 LSNNYNNINNRNVKNSNYCLPSYTAYKNYD----YSEPGRNNEQPGLCGLSNLGNTCFMN 301

Query: 289 SAIQCLVHTPEFARYFRED-YRREINWQNPLGM--------------------------- 320
           SAIQCL +TP    YF  D Y+ E+N+ NPLGM                           
Sbjct: 302 SAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRA 361

Query: 321 --------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADE 360
                                ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E
Sbjct: 362 FKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEE 421

Query: 361 YWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVF 420
            W NH+ RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V + 
Sbjct: 422 AWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLV 481

Query: 421 TSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLI 479
             D    P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R F  D  +
Sbjct: 482 RMDPLTKPMQYKVIVPKIGNILDLCTALSALSGV-SADKMIVTDIYNHRFHRIFAMDENL 540

Query: 480 SLSTIKDDDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISR 538
           S    +DD ++    + +    + V + +  R + +       T     +G P + ++ R
Sbjct: 541 SSIMERDDIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGS-SLFGQPFLMAVPR 599

Query: 539 DDVISSGKIQSTVQRMLSPFLK--------------------------------KESLMH 566
           ++  +  K+ + +   +  ++K                                  S M 
Sbjct: 600 NN--TEDKLYNLLLLRMCRYVKISTETEETEGSLHCCKDQNINGNGPNGIHEEGSPSEME 657

Query: 567 ADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVE 626
            D  D  S      PS   +S S  ++  ++ S +   T      QL       F     
Sbjct: 658 TDEPDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTCKGQLTGHKKRLFTFQFN 717

Query: 627 G-------------------DKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF- 666
                               D+ +R+   S    + +DW  +L ++Y   F EN  E F 
Sbjct: 718 NLGNTDINYIKDDTRHIRFDDRQLRLDERS---FLALDWDPELKKRY---FDENAAEDFE 771

Query: 667 KNGPVTKKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVL 725
           K+  V  K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VL
Sbjct: 772 KHESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVL 831

Query: 726 VIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSG 785
           V+HLKRFSYSR M+ KL+T V+FPI+D ++++++ N N+   + Y L A++NHYGGMG G
Sbjct: 832 VVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGG 890

Query: 786 HYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           HYTA  K  D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 891 HYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 932


>gi|27503316|gb|AAH42353.1| LOC398480 protein [Xenopus laevis]
          Length = 973

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 308/916 (33%), Positives = 455/916 (49%), Gaps = 128/916 (13%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G S L             P  +DNS L  D   +       
Sbjct: 61  WFKQWKKYVGFDAWDVYNVGESSL------------YPGPVDNSGLFPDPDTQ------V 102

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E W +L +WYG   G   + RKV+  GL      VEVY + L+L
Sbjct: 103 LKEHLIDELDYVLVPTEAWQKLMNWYGSVEGQHPIVRKVVEHGLFVKNCKVEVYLIELKL 162

Query: 118 LVMPRGECSTIR-ISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                 E    R  SK +TI  + +   +IF ++ E +  +W+ Y    +  +   + T+
Sbjct: 163 CDDSDPENVITRHFSKADTIDTIEKEMRNIFNISAETETRLWNRYMTNTYEQLTKKESTV 222

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSA-S 234
            DA +   Q I +E   N +GT  + S   +  A  +  +   +PS SS S +   S+ +
Sbjct: 223 QDAGLYQGQMIAIEKR-NADGTWPRQSQTKSSTATSRTFATSGKPSTSSYSTSSSSSSMT 281

Query: 235 KGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCL 294
            G S  H+   S+  N      S ++      +++    GL GL NLGNTCFMNSA+QCL
Sbjct: 282 NGDSSTHALNNSSGLNKGGYTPSYSSYSYRESSSQP---GLCGLSNLGNTCFMNSALQCL 338

Query: 295 VHTPEFARYFRED-YRREINWQNPLGMV-------------------------------- 321
            ++P   RYF  D Y++EIN +NPLGM                                 
Sbjct: 339 SNSPPLTRYFLTDEYKKEINRENPLGMKGEIAVAYAELIRQIWSGDHSYVAPRMFKTQVG 398

Query: 322 ---------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHI 366
                          ELLAFLLDGLHEDLNRVK KPY++ KDA+GRPD  VA E W NH+
Sbjct: 399 RFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDSIVAAEAWENHL 458

Query: 367 ARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSA 426
            RN+SIIVD+  G +KSTLVCP C+KVSVTFDPF YL+LPL     RTM V    SD   
Sbjct: 459 RRNNSIIVDIFHGLFKSTLVCPECHKVSVTFDPFCYLTLPLPMKKDRTMEVFFVRSDPHC 518

Query: 427 LPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTIK 485
            P  Y +TVPK G   DL   L  I  + Q+E + V ++ NH   + F  D +  LS I 
Sbjct: 519 KPKQYRLTVPKMGVVLDLCSALSKISDV-QAENMVVTDVYNHRFHKIFQMDEM--LSHIM 575

Query: 486 DDDHLAAYRV-PKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRD----D 540
           + D +  Y V P+  +  V L +  R +      +  T     +G PL+ S+ +     D
Sbjct: 576 ERDDIFVYEVKPRKAEDWVTLPICFRERRYRQATSTGTV---LFGQPLMISVPKHNLTLD 632

Query: 541 VISSGKIQSTVQRMLSPFLKKESLMHADSF----------DPSSMVTTVDPSGEAHSNSS 590
           ++    +    + + +P  +  + +  DS           D            +  +N  
Sbjct: 633 ILYENVLDRIKRYVKNPHPELYTCLSTDSEACNGSNGECDDEMDHQEEDQEESQEETNGQ 692

Query: 591 SNIAKEDASSSKAVTLPN-LPLQLVDESNVCFDLS-VEGDKTIRIPSS--------STSI 640
           S+ + E+ +S    +  N +P + ++     F  S V    T  + S         S+  
Sbjct: 693 SDESVEEENSEGGCSPCNKMPKKALECRKRLFTFSLVNSYATAEVGSMPAKGYLKLSSFA 752

Query: 641 VVYVDW---SQKLL------EKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLR 691
            V +DW   S+KL       E ++ H  E++++     P  KK     ++L  C++ F +
Sbjct: 753 TVAIDWDSESKKLFYDDQEAEAFDKH--ESMMQ-----PQKKKVT---VALRECIQLFTK 802

Query: 692 EEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIH 751
            E L   D WYCP CK+ ++A+KK DLW LP++LV+HLKRFSY+R  + KL+  V FPI 
Sbjct: 803 TETLGEHDPWYCPNCKKHQRATKKFDLWSLPKILVVHLKRFSYNRFWRDKLDAVVEFPIR 862

Query: 752 DFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPIN 811
           D N++++V +  +    +Y+L A+++HYGGMG GHYTA+ K  D+++WY FDDS +SP +
Sbjct: 863 DLNMSEFVCDPQAGPF-VYDLVAVSDHYGGMGGGHYTAYAKNQDKDQWYYFDDSSVSPAS 921

Query: 812 EDDVKSAAAYVLFYRR 827
           ED + + AAYVLFY+R
Sbjct: 922 EDQIVTKAAYVLFYQR 937


>gi|301768453|ref|XP_002919643.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like
           [Ailuropoda melanoleuca]
          Length = 952

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 308/932 (33%), Positives = 432/932 (46%), Gaps = 170/932 (18%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E               ++G   +  S+  V+ S   L     ++A K
Sbjct: 199 QDAGLYQGQVLVIE------------QKNEDGTWPRGPSAPNVKNSNYCLP---SYTAYK 243

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
               +     +  P                        GL GL NLGNTCFMNSAIQCL 
Sbjct: 244 NYDYSEPGRNNEQP------------------------GLCGLSNLGNTCFMNSAIQCLS 279

Query: 296 HTPEFARYFRED-YRREINWQNPLGM---------------------------------- 320
           +TP    YF  D Y+ E+N+ NPLGM                                  
Sbjct: 280 NTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGR 339

Query: 321 -------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E W NH+ 
Sbjct: 340 FAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKIVAEEAWENHLK 399

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V +   D    
Sbjct: 400 RNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPLTK 459

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTIKD 486
           P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R F  D  +S    +D
Sbjct: 460 PMQYKVVVPKIGNILDLCTALSALSGVP-ADKMIVTDIYNHRFHRIFAMDENLSSIMERD 518

Query: 487 DDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSG 545
           D ++    + +    + V + +  R + +       T     +G P + ++ R++  +  
Sbjct: 519 DIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGS-SLFGQPFLMAVPRNN--TED 575

Query: 546 KIQSTVQRMLSPFLK--------------------------------KESLMHADSFDPS 573
           K+ + +   +  ++K                                  S M  D  D  
Sbjct: 576 KLYNLLLLRMCRYVKISTETEETEGSLHCCKDQNINGNGPNGIHEEGSPSEMETDEPDDE 635

Query: 574 SMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCF----------DL 623
           S      PS   +S S  ++  ++ S +   T      QL       F          D+
Sbjct: 636 SSQDQELPSENENSQSEDSVGGDNDSENGLCTEETCKGQLTGHKKRLFTFQFNNLGNTDI 695

Query: 624 SVEGDKTIRIPSSSTSI------VVYVDWSQKLLEKYNTHFLENLLEVF-KNGPVTKKAR 676
           +   D T  I      +       + +DW   L ++Y   F EN  E F K+  V  K  
Sbjct: 696 NYIKDDTRHIRFDERQLRLDERSFLALDWDPDLKKRY---FDENAAEDFEKHESVEYKPP 752

Query: 677 TEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYS 735
            +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VLV+HLKRFSYS
Sbjct: 753 KKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYS 812

Query: 736 RSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLD 795
           R M+ KL+T V+FPI+D ++++++ N N+   + Y L A++NHYGGMG GHYTA  K  D
Sbjct: 813 RYMRDKLDTLVDFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGGHYTAFAKNKD 871

Query: 796 ENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           + +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 872 DGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 903


>gi|354477262|ref|XP_003500841.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like [Cricetulus
            griseus]
          Length = 1203

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 316/939 (33%), Positives = 437/939 (46%), Gaps = 155/939 (16%)

Query: 1    WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
            W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 259  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------S 300

Query: 61   IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
            + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 301  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 360

Query: 118  LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                      T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 361  CENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTI 420

Query: 176  DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
             DA +   Q +++E   N +GT  +                   PS      A  +SA  
Sbjct: 421  QDAGLYQGQVLVIEQ-KNEDGTWPRG------------------PSAPKSPGASNFSALP 461

Query: 236  GTSRNHSSEISTSPNLASARDSDNTLGS---------SGVTTRGASVGLTGLLNLGNTCF 286
              S +  S    + N  + ++S+  L S         S         GL GL NLGNTCF
Sbjct: 462  KISPSSLSNNYNNINSRNVKNSNYCLPSYTAYKNYDYSEPGRNNEQPGLCGLSNLGNTCF 521

Query: 287  MNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM------------------------- 320
            MNSAIQCL +TP    YF  D Y+ E+N+ NPLGM                         
Sbjct: 522  MNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTP 581

Query: 321  ----------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVA 358
                                   ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA
Sbjct: 582  RAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVA 641

Query: 359  DEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVT 418
            +E W NH+ RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     R++ V 
Sbjct: 642  EEAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERSLEVY 701

Query: 419  VFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDP 477
            +   D    P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R F  D 
Sbjct: 702  LVRMDPLIKPMQYKVIVPKIGNILDLCAALSALSGVP-ADKMIVTDIYNHRFHRIFAMDE 760

Query: 478  LISLSTIKDDDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSI 536
             +S    +DD ++    + +    + V + +  R + +       T     +G P + ++
Sbjct: 761  NLSSIMERDDIYVFEININRTEDTEHVVIPVCLREKFRHSSYTHHTGS-SLFGQPFLMAV 819

Query: 537  SRDD------------VISSGKIQSTVQRMLSPFLKKE------------------SLMH 566
             R++            +    K+ +  +    P    E                  S M 
Sbjct: 820  PRNNTEDKLYNLLLLRMCRYVKMSTETEETDGPLRCCEDQNINGNGPNGIHEEGSPSEME 879

Query: 567  ADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCF----- 621
             D  D  S      PS   +S S  ++  ++ S +   T      QL       F     
Sbjct: 880  TDEPDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEETCKGQLTGHRKRLFTFQFI 939

Query: 622  -----DLSVEGDKTIRIPSSSTSI------VVYVDWSQKLLEKYNTHFLENLLEVF-KNG 669
                 D++   D T  I      +       + +DW   L ++Y   F EN  E F K+ 
Sbjct: 940  NLGNTDINYIKDDTRHIRFDDRQLRLDERSFLALDWDPDLKKRY---FDENAAEDFEKHE 996

Query: 670  PVTKKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIH 728
             V  K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VLV+H
Sbjct: 997  SVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVH 1056

Query: 729  LKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYT 788
            LKRFSYSR M+ KL+T V+FPI+D ++++++ N N+    LY L A++NHYGGMG GHYT
Sbjct: 1057 LKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAG-PCLYNLIAVSNHYGGMGGGHYT 1115

Query: 789  AHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            A  K  D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 1116 AFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 1154


>gi|345776465|ref|XP_860477.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15 isoform 10
           [Canis lupus familiaris]
          Length = 952

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 308/932 (33%), Positives = 432/932 (46%), Gaps = 170/932 (18%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E               ++G   +  S+  V+ S   L     ++A K
Sbjct: 199 QDAGLYQGQVLVIE------------QKNEDGTWPRGPSAPNVKNSNYCLP---SYTAYK 243

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
               +     +  P                        GL GL NLGNTCFMNSAIQCL 
Sbjct: 244 NYDYSEPGRNNEQP------------------------GLCGLSNLGNTCFMNSAIQCLS 279

Query: 296 HTPEFARYFRED-YRREINWQNPLGM---------------------------------- 320
           +TP    YF  D Y+ E+N+ NPLGM                                  
Sbjct: 280 NTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGR 339

Query: 321 -------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E W NH+ 
Sbjct: 340 FAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKIVAEEAWENHLK 399

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V +   D    
Sbjct: 400 RNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPLTK 459

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTIKD 486
           P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R F  D  +S    +D
Sbjct: 460 PMQYKVVVPKIGNILDLCTALSALSGVP-ADKMIVTDIYNHRFHRIFAMDENLSSIMERD 518

Query: 487 DDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSG 545
           D ++    + +    + V + +  R + +       T     +G P + ++ R++  +  
Sbjct: 519 DIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGS-SLFGQPFLMAVPRNN--TED 575

Query: 546 KIQSTVQRMLSPFLK--------------------------------KESLMHADSFDPS 573
           K+ + +   +  ++K                                  S M  D  D  
Sbjct: 576 KLYNLLLLRMCRYVKISTEAEETEGSLHCCKDQNINGNGPNGIHEEGSPSEMETDEPDDE 635

Query: 574 SMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCF----------DL 623
           S      PS   +S S  ++  ++ S +   T      QL       F          D+
Sbjct: 636 SSQDQELPSENENSQSEDSVGGDNDSENGLCTEETCKGQLTGHKKRLFTFQFNNLGNTDI 695

Query: 624 SVEGDKTIRIPSSSTSI------VVYVDWSQKLLEKYNTHFLENLLEVF-KNGPVTKKAR 676
           +   D T  I      +       + +DW   L ++Y   F EN  E F K+  V  K  
Sbjct: 696 NYIKDDTRHIRFDERQLRLDERSFLALDWDPDLKKRY---FDENAAEDFEKHESVEYKPP 752

Query: 677 TEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYS 735
            +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VLV+HLKRFSYS
Sbjct: 753 KKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYS 812

Query: 736 RSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLD 795
           R M+ KL+T V+FPI+D ++++++ N N+   + Y L A++NHYGGMG GHYTA  K  D
Sbjct: 813 RYMRDKLDTLVDFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGGHYTAFAKNKD 871

Query: 796 ENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           + +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 872 DGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 903


>gi|355564419|gb|EHH20919.1| Ubiquitin carboxyl-terminal hydrolase 15, partial [Macaca mulatta]
          Length = 976

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 311/942 (33%), Positives = 437/942 (46%), Gaps = 161/942 (17%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 32  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------S 73

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 74  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 133

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 134 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTI 193

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E   N +GT              +  S    P  S+ S     S S 
Sbjct: 194 QDAGLYQGQVLVIEQ-KNEDGT------------WPRGPSTPKSPGASNFSTLPKISPSS 240

Query: 236 GTSRNHSSEISTS-------PNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMN 288
            ++  ++             P+  + ++ D     S         GL GL NLGNTCFMN
Sbjct: 241 LSNNYNNMNNRNVKNSNYCLPSYTAYKNYD----YSEPGRNNEQPGLCGLSNLGNTCFMN 296

Query: 289 SAIQCLVHTPEFARYFRED-YRREINWQNPLGM--------------------------- 320
           SAIQCL +TP    YF  D Y+ E+N+ NPLGM                           
Sbjct: 297 SAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRA 356

Query: 321 --------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADE 360
                                ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E
Sbjct: 357 FKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEE 416

Query: 361 YWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVF 420
            W NH+ RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V + 
Sbjct: 417 AWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLV 476

Query: 421 TSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLI 479
             D    P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R F  D  +
Sbjct: 477 RMDPLTKPMQYKVVVPKIGNILDLCTALSALSGIP-ADKMIVTDIYNHRFHRIFAMDENL 535

Query: 480 SLSTIKDDDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISR 538
           S    +DD ++    + +    + V + +  R + +       T     +G P + ++ R
Sbjct: 536 SSIMERDDIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGS-SLFGQPFLMAVPR 594

Query: 539 DDVISSGKIQSTVQRMLSPFLK--------------------------------KESLMH 566
           ++  +  K+ + +   +  ++K                                  S M 
Sbjct: 595 NN--TEDKLYNLLLLRMCRYVKISTETEETEGSLHCCKDQNINGNGPNGIHEEGSPSEME 652

Query: 567 ADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVE 626
            D  D  S      PS   +S S  ++  ++ S +   T      QL       F     
Sbjct: 653 TDEPDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTCKGQLTGHKKRLFTFQFN 712

Query: 627 G-------------------DKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF- 666
                               D+ +R+   S    + +DW   L ++Y   F EN  E F 
Sbjct: 713 NLGNTDINYIKDDTRHIRFDDRQLRLDERS---FLALDWDPDLKKRY---FDENAAEDFE 766

Query: 667 KNGPVTKKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVL 725
           K+  V  K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VL
Sbjct: 767 KHESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVL 826

Query: 726 VIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSG 785
           V+HLKRFSYSR M+ KL+T V+FPI+D ++++++ N N+   + Y L A++NHYGGMG G
Sbjct: 827 VVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGG 885

Query: 786 HYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           HYTA  K  D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 886 HYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 927


>gi|73968609|ref|XP_849935.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15 isoform 2
           [Canis lupus familiaris]
          Length = 981

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 315/941 (33%), Positives = 439/941 (46%), Gaps = 159/941 (16%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E   N +GT  +                   PS      A  +SA  
Sbjct: 199 QDAGLYQGQVLVIEQ-KNEDGTWPRG------------------PSAPKSPGASNFSALP 239

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGS---------SGVTTRGASVGLTGLLNLGNTCF 286
             S +  S    + N  + ++S+  L S         S         GL GL NLGNTCF
Sbjct: 240 KISPSSLSNNYNNINNRNVKNSNYCLPSYTAYKNYDYSEPGRNNEQPGLCGLSNLGNTCF 299

Query: 287 MNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM------------------------- 320
           MNSAIQCL +TP    YF  D Y+ E+N+ NPLGM                         
Sbjct: 300 MNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTP 359

Query: 321 ----------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVA 358
                                  ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA
Sbjct: 360 RAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKIVA 419

Query: 359 DEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVT 418
           +E W NH+ RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V 
Sbjct: 420 EEAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVY 479

Query: 419 VFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDP 477
           +   D    P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R F  D 
Sbjct: 480 LVRMDPLTKPMQYKVVVPKIGNILDLCTALSALSGVP-ADKMIVTDIYNHRFHRIFAMDE 538

Query: 478 LISLSTIKDDDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSI 536
            +S    +DD ++    + +    + V + +  R + +       T     +G P + ++
Sbjct: 539 NLSSIMERDDIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGS-SLFGQPFLMAV 597

Query: 537 SRDDVISSGKIQSTVQRMLSPFLK--------------------------------KESL 564
            R++  +  K+ + +   +  ++K                                  S 
Sbjct: 598 PRNN--TEDKLYNLLLLRMCRYVKISTEAEETEGSLHCCKDQNINGNGPNGIHEEGSPSE 655

Query: 565 MHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCF--- 621
           M  D  D  S      PS   +S S  ++  ++ S +   T      QL       F   
Sbjct: 656 METDEPDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEETCKGQLTGHKKRLFTFQ 715

Query: 622 -------DLSVEGDKTIRIPSSSTSI------VVYVDWSQKLLEKYNTHFLENLLEVF-K 667
                  D++   D T  I      +       + +DW   L ++Y   F EN  E F K
Sbjct: 716 FNNLGNTDINYIKDDTRHIRFDERQLRLDERSFLALDWDPDLKKRY---FDENAAEDFEK 772

Query: 668 NGPVTKKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLV 726
           +  V  K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VLV
Sbjct: 773 HESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLV 832

Query: 727 IHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGH 786
           +HLKRFSYSR M+ KL+T V+FPI+D ++++++ N N+   + Y L A++NHYGGMG GH
Sbjct: 833 VHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGGH 891

Query: 787 YTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           YTA  K  D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 892 YTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 932


>gi|403269026|ref|XP_003926559.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15 isoform 1
           [Saimiri boliviensis boliviensis]
          Length = 981

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 311/942 (33%), Positives = 437/942 (46%), Gaps = 161/942 (17%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E   N +GT              +  S    P  S+ S     S S 
Sbjct: 199 QDAGLYQGQVLVIEQ-KNEDGT------------WPRGPSTPKSPGASNFSTLPKISPSS 245

Query: 236 GTSRNHSSEISTS-------PNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMN 288
            ++  ++             P+  + ++ D     S         GL GL NLGNTCFMN
Sbjct: 246 LSNNYNNINNRNVKNSNYCLPSYTAYKNYD----YSEPGRNNEQPGLCGLSNLGNTCFMN 301

Query: 289 SAIQCLVHTPEFARYFRED-YRREINWQNPLGM--------------------------- 320
           SAIQCL +TP    YF  D Y+ E+N+ NPLGM                           
Sbjct: 302 SAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRA 361

Query: 321 --------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADE 360
                                ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E
Sbjct: 362 FKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEE 421

Query: 361 YWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVF 420
            W NH+ RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V + 
Sbjct: 422 AWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLV 481

Query: 421 TSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLI 479
             D    P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R F  D  +
Sbjct: 482 RMDPLTKPMQYKVVVPKIGNILDLCTALSALSGIP-ADKMIVTDIYNHRFHRIFAMDENL 540

Query: 480 SLSTIKDDDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISR 538
           S    +DD ++    + +    + V + +  R + +       T     +G P + ++ R
Sbjct: 541 SSIMERDDIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGS-SLFGQPFLMAVPR 599

Query: 539 DDVISSGKIQSTVQRMLSPFLK--------------------------------KESLMH 566
           ++  +  K+ + +   +  ++K                                  S M 
Sbjct: 600 NN--TEDKLYNLLLLRMCRYVKISTETEETEGSLHCCKDQNINGNGPNGIHEEGSPSEME 657

Query: 567 ADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVE 626
            D  D  S      PS   +S S  ++  ++ S +   T      QL       F     
Sbjct: 658 TDEPDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTCKGQLTGHKKRLFTFQFN 717

Query: 627 G-------------------DKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF- 666
                               D+ +R+   S    + +DW   L ++Y   F EN  E F 
Sbjct: 718 NLGNTDINYIKDDTRHIRFDDRQLRLDERS---FLALDWDPDLKKRY---FDENAAEDFE 771

Query: 667 KNGPVTKKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVL 725
           K+  V  K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VL
Sbjct: 772 KHESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVL 831

Query: 726 VIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSG 785
           V+HLKRFSYSR M+ KL+T V+FPI+D ++++++ N N+   + Y L A++NHYGGMG G
Sbjct: 832 VVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGG 890

Query: 786 HYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           HYTA  K  D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 891 HYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 932


>gi|126339080|ref|XP_001363326.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15 isoform 2
           [Monodelphis domestica]
          Length = 954

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 309/942 (32%), Positives = 439/942 (46%), Gaps = 189/942 (20%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E   N +GT                                 W    
Sbjct: 199 QDAGLYQGQMLVIEQ-KNEDGT---------------------------------WPRGP 224

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
            T    +S     P+  + ++ D     S         GL GL NLGNTCFMNSAIQCL 
Sbjct: 225 STPNVKNSNYCL-PSYTTYKNYD----YSEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLS 279

Query: 296 HTPEFARYFRED-YRREINWQNPLGM---------------------------------- 320
           +TP    YF  D Y+ E+N+ NPLGM                                  
Sbjct: 280 NTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKYSYVTPRAFKTQVGR 339

Query: 321 -------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E W NH+ 
Sbjct: 340 FAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLK 399

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V +   D    
Sbjct: 400 RNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPLTK 459

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTIK 485
           P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R   +D+ L S+   +
Sbjct: 460 PMQYKVVVPKIGNILDLCTALSTLSGVP-ADKMIVTDIYNHRFHRIFAMDENLNSIME-R 517

Query: 486 DDDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISS 544
           DD ++    + +    + V + +  R + +  G +  +     +G P + ++ R++  + 
Sbjct: 518 DDIYVFEITINRTEDTEQVIIPVCLREKYRHTGYSHHSGS-SLFGQPFLMAVPRNN--TE 574

Query: 545 GKIQSTVQRMLSPFLKKE--------------------------------SLMHADSFDP 572
            K+ + +   +  ++K                                  S M  D  D 
Sbjct: 575 EKLYNLLLLRMCRYVKTSTETEETEGSLHYCKDQNINGNGPNGIHEECSPSEMETDEPDD 634

Query: 573 SSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLV------------------ 614
            S      PS   +S S  ++  ++ S +   T      QL+                  
Sbjct: 635 ESSQDQELPSENENSQSEDSVGGDNDSENGLCTEETCKGQLLMGHKKRLFTFQFNNLGNT 694

Query: 615 -------DESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF- 666
                  D  ++ FD     D+ +R+   S    + +DW  +L ++Y   F +N  E F 
Sbjct: 695 DINYIKDDTRHIRFD-----DRQLRLDERS---FLALDWDPELKKRY---FDDNAAEDFE 743

Query: 667 KNGPVTKKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVL 725
           K+  V  K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VL
Sbjct: 744 KHESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVL 803

Query: 726 VIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSG 785
           V+HLKRFSYSR M+ KL+T V+FPI+D ++++++ N N+   + Y L A++NHYGGMG G
Sbjct: 804 VVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGG 862

Query: 786 HYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           HYTA  K  D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 863 HYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 904


>gi|74149555|dbj|BAE36413.1| unnamed protein product [Mus musculus]
          Length = 981

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 313/944 (33%), Positives = 439/944 (46%), Gaps = 165/944 (17%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLEQIC-IWDYYGHRKHALMNDMDRTL 175
                     T R SK +T+  + +    IF +  E+   +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTMDTIEKEIRKIFNIPDEKEARLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E   N +GT              +  S    P  S+ S     S S 
Sbjct: 199 QDAGLYQGQVLVIEQ-KNEDGT------------WPRGPSTPKSPGASNFSTLPKISPSS 245

Query: 236 GTSRNHSSEISTS-------PNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMN 288
            ++  ++             P+  + ++ D     S         GL GL NLGNTCFMN
Sbjct: 246 LSNNYNNINNRNVKNSNYCLPSYTAYKNYD----YSEPGRNNEQPGLCGLSNLGNTCFMN 301

Query: 289 SAIQCLVHTPEFARYFRED-YRREINWQNPLGM--------------------------- 320
           SAIQCL +TP    YF  D Y+ E+N+ NPLGM                           
Sbjct: 302 SAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRA 361

Query: 321 --------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADE 360
                                ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E
Sbjct: 362 FKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEE 421

Query: 361 YWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVF 420
            W NH+ RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     R++ V + 
Sbjct: 422 AWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERSLEVYLV 481

Query: 421 TSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFL--DDPL 478
             D  A P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R    D+  
Sbjct: 482 RMDPLAKPMQYKVIVPKIGNILDLCTALSALSGVP-ADKMIVTDIYNHRFHRIFAVDE-- 538

Query: 479 ISLSTIKDDDHLAAYRVPKLVKKA-----VFLQLIHRLQEQEPGAAQTTSQWKAYGTPLV 533
            +LS+I + D +  + +   + +A     V + +  R + +       T     +G P +
Sbjct: 539 -NLSSIMERDDIYVFEIN--INRAEDTEHVVIPVCLREKFRHSSYTHHTGS-SLFGQPFL 594

Query: 534 SSISRDDVISSGKIQSTVQRMLSPFLK--------------------------------K 561
            +I R++  +  K+ + +   +  ++K                                 
Sbjct: 595 MAIPRNN--TEDKLYNLLLLRMCRYVKMSTETEETDGHLRCCEDQNINGNGPNGLHEEGS 652

Query: 562 ESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCF 621
            S M  D  D  S      PS   +S S  ++  ++ S +   T      QL       F
Sbjct: 653 PSEMETDEPDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEETCKGQLTGHKKRLF 712

Query: 622 DLSVE--GDKTIRIPSSSTSIVVY--------------VDWSQKLLEKYNTHFLENLLEV 665
                  G+  I      TS + +              +DW   L ++Y   F EN  E 
Sbjct: 713 TFQFNNLGNNDINYIKDDTSHIRFDDRQLRLDERSFLALDWDPDLKKRY---FDENAAED 769

Query: 666 F-KNGPVTKKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPE 723
           F K+  V  K    P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP 
Sbjct: 770 FEKHESVEYKPPKRPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPP 829

Query: 724 VLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMG 783
           VLV+HLKRFSYSR M+ KL+T V+FPI D ++++++ N N+   + Y L A++NHYGGMG
Sbjct: 830 VLVVHLKRFSYSRYMRDKLDTLVDFPISDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMG 888

Query: 784 SGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            GHYTA  K  D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 889 GGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 932


>gi|281348175|gb|EFB23759.1| hypothetical protein PANDA_008289 [Ailuropoda melanoleuca]
          Length = 981

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 315/941 (33%), Positives = 439/941 (46%), Gaps = 159/941 (16%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E   N +GT  +                   PS      A  +SA  
Sbjct: 199 QDAGLYQGQVLVIEQ-KNEDGTWPRG------------------PSAPKSPGASNFSALP 239

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGS---------SGVTTRGASVGLTGLLNLGNTCF 286
             S +  S    + N  + ++S+  L S         S         GL GL NLGNTCF
Sbjct: 240 KISPSSLSNNYNNINNRNVKNSNYCLPSYTAYKNYDYSEPGRNNEQPGLCGLSNLGNTCF 299

Query: 287 MNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM------------------------- 320
           MNSAIQCL +TP    YF  D Y+ E+N+ NPLGM                         
Sbjct: 300 MNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTP 359

Query: 321 ----------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVA 358
                                  ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA
Sbjct: 360 RAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKIVA 419

Query: 359 DEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVT 418
           +E W NH+ RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V 
Sbjct: 420 EEAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVY 479

Query: 419 VFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDP 477
           +   D    P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R F  D 
Sbjct: 480 LVRMDPLTKPMQYKVVVPKIGNILDLCTALSALSGVP-ADKMIVTDIYNHRFHRIFAMDE 538

Query: 478 LISLSTIKDDDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSI 536
            +S    +DD ++    + +    + V + +  R + +       T     +G P + ++
Sbjct: 539 NLSSIMERDDIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGS-SLFGQPFLMAV 597

Query: 537 SRDDVISSGKIQSTVQRMLSPFLK--------------------------------KESL 564
            R++  +  K+ + +   +  ++K                                  S 
Sbjct: 598 PRNN--TEDKLYNLLLLRMCRYVKISTETEETEGSLHCCKDQNINGNGPNGIHEEGSPSE 655

Query: 565 MHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCF--- 621
           M  D  D  S      PS   +S S  ++  ++ S +   T      QL       F   
Sbjct: 656 METDEPDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEETCKGQLTGHKKRLFTFQ 715

Query: 622 -------DLSVEGDKTIRIPSSSTSI------VVYVDWSQKLLEKYNTHFLENLLEVF-K 667
                  D++   D T  I      +       + +DW   L ++Y   F EN  E F K
Sbjct: 716 FNNLGNTDINYIKDDTRHIRFDERQLRLDERSFLALDWDPDLKKRY---FDENAAEDFEK 772

Query: 668 NGPVTKKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLV 726
           +  V  K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VLV
Sbjct: 773 HESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLV 832

Query: 727 IHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGH 786
           +HLKRFSYSR M+ KL+T V+FPI+D ++++++ N N+   + Y L A++NHYGGMG GH
Sbjct: 833 VHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGGH 891

Query: 787 YTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           YTA  K  D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 892 YTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 932


>gi|344252839|gb|EGW08943.1| Ubiquitin carboxyl-terminal hydrolase 4 [Cricetulus griseus]
          Length = 940

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 296/913 (32%), Positives = 437/913 (47%), Gaps = 118/913 (12%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 18  WFKQWKKYVGFD----SWDMYNVGEH--------NLFPGPIDNSGLFSDPESQ------T 59

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 60  LKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 119

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T
Sbjct: 120 CENSDPTNVLS-CHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNT 178

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQD-NGFAEKKASSVLVEPSKSSLSIAGGWSA 233
           + DA +   Q +++E   N +GT  + ++Q  +  A  +  +   +PS S  S       
Sbjct: 179 IQDAGLYQGQVLVIEP-QNEDGTWPRQTLQSKSSTAPSRNFTTSPKPSASPYSSVSASLI 237

Query: 234 SKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQC 293
           + G   N +S + +S           +       +     GL GL NLGNTCFMNSA+QC
Sbjct: 238 ANGDGTN-TSGMHSSGVSRGGSGFSASYNCQEPQSPHTQPGLCGLGNLGNTCFMNSALQC 296

Query: 294 LVHTPEFARYF-REDYRREINWQNPLGMV------------------------------- 321
           L +T     YF +++Y  EIN  NPLGM                                
Sbjct: 297 LSNTAPLTEYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDTHVAPRMFKTQV 356

Query: 322 ----------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANH 365
                           ELLAF+LDGLHEDLNRVK KPY++ KDA GRPD  VA E W NH
Sbjct: 357 GRFAPQFSGYQQQDSQELLAFILDGLHEDLNRVKKKPYLEPKDASGRPDAVVAKEAWENH 416

Query: 366 IARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGS 425
             RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL     R M V +  +D  
Sbjct: 417 RLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEVFLVPADPQ 476

Query: 426 ALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLST 483
             P    VTVP  G   DL + L  +  +  +E + V ++ NH   +   +D+    LS 
Sbjct: 477 CRPIQCRVTVPLMGAISDLCEALAKLSGIA-AENMVVTDVYNHRFHKIFQMDE---GLSH 532

Query: 484 IKDDDHLAAYRVPKLV---KKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDD 540
           I   D +  Y V        + + L +  R ++  P +  T+S    YG PL+ S+ +  
Sbjct: 533 IMPRDDIFVYEVCNTSMDGSECITLPVYFREKKSRPSS--TSSGAVLYGQPLLVSVPKHK 590

Query: 541 VISSGKIQSTVQRMLSPFLKK-------ESLMHADSFDPSSMVTTVD--------PSGEA 585
           +      Q+   R +S ++K+        S +   + + S      D          G+ 
Sbjct: 591 LTLEALYQAVCDR-ISRYIKQPLPDEFLSSPLEPGACNGSRSSYEGDDDEEMDHQEEGKE 649

Query: 586 H---SNSSSNIAKEDASSSKAVTLPNLP-------LQLVDESNVCFDLSVEGD-KTIRIP 634
           H   +  S    + D  S     +   P         LV+        S+  D K +++ 
Sbjct: 650 HLSETEGSGEDEQGDGPSEPTHKVKGQPGHRRLFTFSLVNSYGTADINSLATDGKLLKLN 709

Query: 635 SSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEP 694
           S ST   + +DW  +    Y         E   +    +K +   ++L  C+E F   E 
Sbjct: 710 SRST---LAIDWDSETRSLYYDQQESEACEKHVSMSQPQKKKKTAVALRECIELFTTMET 766

Query: 695 LVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFN 754
           L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + KL+T V FP+   N
Sbjct: 767 LGEHDPWYCPTCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPVRGLN 826

Query: 755 LTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDD 814
           ++++V ++ S+R  +Y+L A++NHYG MG GHYTA+ K     +WY FDDS++S  +ED 
Sbjct: 827 MSEFVCDR-SARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQ 885

Query: 815 VKSAAAYVLFYRR 827
           + + AAYVLFY+R
Sbjct: 886 IVTKAAYVLFYQR 898


>gi|426373275|ref|XP_004053535.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15 [Gorilla
           gorilla gorilla]
          Length = 898

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 301/898 (33%), Positives = 421/898 (46%), Gaps = 164/898 (18%)

Query: 38  PSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLAR 94
           P  IDNS L+ D  A+       + + L++  DYILLP E WN+L SWY    G   +AR
Sbjct: 8   PGPIDNSGLLKDGDAQ------SLKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIAR 61

Query: 95  KVISSGLSQTELAVEVYPLRLQLLVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE- 152
           KV+  G+      VEVY   L+L          T R SK +TI  + +    IF +  E 
Sbjct: 62  KVVEQGMFVKHCKVEVYLTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEK 121

Query: 153 QICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKK 212
           +  +W+ Y       +N  D T+ DA +   Q +++E               ++G   + 
Sbjct: 122 ETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIE------------QKNEDGTWPRG 169

Query: 213 ASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGAS 272
            S+  V+ S   L     ++A K    +     +  P                       
Sbjct: 170 PSTPNVKNSNYCLP---SYTAYKNYDYSEPGRNNEQP----------------------- 203

Query: 273 VGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM----------- 320
            GL GL NLGNTCFMNSAIQCL +TP    YF  D Y+ E+N+ NPLGM           
Sbjct: 204 -GLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAEL 262

Query: 321 ------------------------------------VELLAFLLDGLHEDLNRVKHKPYI 344
                                                ELLAFLLDGLHEDLNR++ KPYI
Sbjct: 263 IKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYI 322

Query: 345 KSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLS 404
           + KDADGRPD+ VA+E W NH+ RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+
Sbjct: 323 QLKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLT 382

Query: 405 LPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAE 464
           LPL     RT+ V +   D    P  Y V VPK G   DL   L  +  +  ++++ V +
Sbjct: 383 LPLPMKKERTLEVYLVRMDPLTKPMQYKVVVPKIGNILDLCTALSALSGIP-ADKMIVTD 441

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTT 522
           I NH   R F  D  +S    +DD ++    + +    + V + +  R + +       T
Sbjct: 442 IYNHRFHRIFAMDENLSSIMERDDIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHT 501

Query: 523 SQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLK---------------------- 560
                +G P + ++ R++  +  K+ + +   +  ++K                      
Sbjct: 502 GS-SLFGQPFLMAVPRNN--TEDKLYNLLLLRMCRYVKISTETEETEGSLHCCKDQNING 558

Query: 561 ----------KESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLP 610
                       S M  D  D  S      PS   +S S  ++  ++ S +   T     
Sbjct: 559 NGPNGIHEEGSPSEMETDEPDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTCK 618

Query: 611 LQLVDESNVCFDLSVEG-------------------DKTIRIPSSSTSIVVYVDWSQKLL 651
            QL       F                         D+ +R+   S    + +DW   L 
Sbjct: 619 GQLTGHKKRLFTFQFNNLGNTDINYIKDDTRHIRFDDRQLRLDERS---FLALDWDPDLK 675

Query: 652 EKYNTHFLENLLEVF-KNGPVTKKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKER 709
           ++Y   F EN  E F K+  V  K   +P   L  C+E F  +E L  ED WYCP CKE 
Sbjct: 676 KRY---FDENAAEDFEKHESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEH 732

Query: 710 RQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQL 769
           +QA+KKLDLW LP VLV+HLKRFSYSR M+ KL+T V+FPI+D ++++++ N N+   + 
Sbjct: 733 QQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCR- 791

Query: 770 YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           Y L A++NHYGGMG GHYTA  K  D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 792 YNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 849


>gi|114644046|ref|XP_509182.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15 isoform 6 [Pan
           troglodytes]
 gi|297692321|ref|XP_002823509.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15 isoform 1
           [Pongo abelii]
 gi|397508878|ref|XP_003824866.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15 isoform 1 [Pan
           paniscus]
          Length = 981

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 311/942 (33%), Positives = 437/942 (46%), Gaps = 161/942 (17%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E   N +GT              +  S    P  S+ S     S S 
Sbjct: 199 QDAGLYQGQVLVIEQ-KNEDGT------------WPRGPSTPKSPGASNFSTLPKISPSS 245

Query: 236 GTSRNHSSEISTS-------PNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMN 288
            ++  ++             P+  + ++ D     S         GL GL NLGNTCFMN
Sbjct: 246 LSNNYNNMNNRNVKNSNYCLPSYTAYKNYD----YSEPGRNNEQPGLCGLSNLGNTCFMN 301

Query: 289 SAIQCLVHTPEFARYFRED-YRREINWQNPLGM--------------------------- 320
           SAIQCL +TP    YF  D Y+ E+N+ NPLGM                           
Sbjct: 302 SAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRA 361

Query: 321 --------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADE 360
                                ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E
Sbjct: 362 FKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEE 421

Query: 361 YWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVF 420
            W NH+ RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V + 
Sbjct: 422 AWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLV 481

Query: 421 TSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLI 479
             D    P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R F  D  +
Sbjct: 482 RMDPLTKPMQYKVVVPKIGNILDLCTALSALSGIP-ADKMIVTDIYNHRFHRIFAMDENL 540

Query: 480 SLSTIKDDDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISR 538
           S    +DD ++    + +    + V + +  R + +       T     +G P + ++ R
Sbjct: 541 SSIMERDDIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGS-SLFGQPFLMAVPR 599

Query: 539 DDVISSGKIQSTVQRMLSPFLK--------------------------------KESLMH 566
           ++  +  K+ + +   +  ++K                                  S M 
Sbjct: 600 NN--TEDKLYNLLLLRMCRYVKISTETEETEGSLHCCKDQNINGNGPNGIHEEGSPSEME 657

Query: 567 ADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVE 626
            D  D  S      PS   +S S  ++  ++ S +   T      QL       F     
Sbjct: 658 TDEPDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTCKGQLTGHKKRLFTFQFN 717

Query: 627 G-------------------DKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF- 666
                               D+ +R+   S    + +DW   L ++Y   F EN  E F 
Sbjct: 718 NLGNTDINYIKDDTRHIRFDDRQLRLDERS---FLALDWDPDLKKRY---FDENAAEDFE 771

Query: 667 KNGPVTKKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVL 725
           K+  V  K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VL
Sbjct: 772 KHESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVL 831

Query: 726 VIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSG 785
           V+HLKRFSYSR M+ KL+T V+FPI+D ++++++ N N+   + Y L A++NHYGGMG G
Sbjct: 832 VVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGG 890

Query: 786 HYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           HYTA  K  D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 891 HYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 932


>gi|296212204|ref|XP_002752722.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15 isoform 1
           [Callithrix jacchus]
          Length = 981

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 311/942 (33%), Positives = 437/942 (46%), Gaps = 161/942 (17%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E   N +GT              +  S    P  S+ S     S S 
Sbjct: 199 QDAGLYQGQVLVIEQ-KNEDGT------------WPRGPSTPKSPGASNFSTLPKISPSS 245

Query: 236 GTSRNHSSEISTS-------PNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMN 288
            ++  ++             P+  + ++ D     S         GL GL NLGNTCFMN
Sbjct: 246 LSNNYNNINNRNVKNSNYCLPSYTAYKNYD----YSEPGRNNEQPGLCGLSNLGNTCFMN 301

Query: 289 SAIQCLVHTPEFARYFRED-YRREINWQNPLGM--------------------------- 320
           SAIQCL +TP    YF  D Y+ E+N+ NPLGM                           
Sbjct: 302 SAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRA 361

Query: 321 --------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADE 360
                                ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E
Sbjct: 362 FKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEE 421

Query: 361 YWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVF 420
            W NH+ RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V + 
Sbjct: 422 AWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLV 481

Query: 421 TSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLI 479
             D    P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R F  D  +
Sbjct: 482 RMDPLTKPMQYKVVVPKIGNILDLCTALSALSGIP-ADKMIVTDIYNHRFHRIFAMDENL 540

Query: 480 SLSTIKDDDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISR 538
           S    +DD ++    + +    + V + +  R + +       T     +G P + ++ R
Sbjct: 541 SSIMERDDIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGS-SLFGQPFLMAVPR 599

Query: 539 DDVISSGKIQSTVQRMLSPFLK--------------------------------KESLMH 566
           ++  +  K+ + +   +  ++K                                  S M 
Sbjct: 600 NN--TEDKLYNLLLLRMCRYVKISTETEETEGSLHSCKDQNINGNGPNGIHEEGSPSEME 657

Query: 567 ADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVE 626
            D  D  S      PS   +S S  ++  ++ S +   T      QL       F     
Sbjct: 658 TDEPDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTCKGQLTGHKKRLFTFQFN 717

Query: 627 G-------------------DKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF- 666
                               D+ +R+   S    + +DW   L ++Y   F EN  E F 
Sbjct: 718 NLGNTDINYIKDDTRHIRFDDRQLRLDERS---FLALDWDPDLKKRY---FDENAAEDFE 771

Query: 667 KNGPVTKKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVL 725
           K+  V  K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VL
Sbjct: 772 KHESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVL 831

Query: 726 VIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSG 785
           V+HLKRFSYSR M+ KL+T V+FPI+D ++++++ N N+   + Y L A++NHYGGMG G
Sbjct: 832 VVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGG 890

Query: 786 HYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           HYTA  K  D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 891 HYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 932


>gi|431892000|gb|ELK02447.1| Ubiquitin carboxyl-terminal hydrolase 15 [Pteropus alecto]
          Length = 981

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 310/942 (32%), Positives = 438/942 (46%), Gaps = 161/942 (17%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDN+ L+ D  A+       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNTGLLKDGDAQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E   N +GT              +  S    P  S+ S     S S 
Sbjct: 199 QDAGLYQGQVLVIEQ-KNEDGT------------WPRGPSTPKSPGASNFSTLPKISPSS 245

Query: 236 GTSRNHSSEISTS-------PNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMN 288
            ++  ++             P+  + ++ D     S         GL GL NLGNTCFMN
Sbjct: 246 LSNNYNNINNRNVKNSNYCLPSYTAYKNYD----YSEPGRNNEQPGLCGLSNLGNTCFMN 301

Query: 289 SAIQCLVHTPEFARYFRED-YRREINWQNPLGM--------------------------- 320
           SAIQCL +TP    YF  D Y+ E+N+ NPLGM                           
Sbjct: 302 SAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRA 361

Query: 321 --------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADE 360
                                ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E
Sbjct: 362 FKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEE 421

Query: 361 YWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVF 420
            W NH+ RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V + 
Sbjct: 422 AWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLV 481

Query: 421 TSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLI 479
             D    P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R F  D  +
Sbjct: 482 RMDPLTKPMQYKVVVPKIGNILDLCTALSALSGVP-ADKMIVTDIYNHRFHRIFAMDENL 540

Query: 480 SLSTIKDDDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISR 538
           S    +DD ++    + +    + V + +  R + +       T     +G P + ++ R
Sbjct: 541 SSIMERDDIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGS-SLFGQPFLMAVPR 599

Query: 539 DDVISSGKIQSTVQRMLSPFLK--------------------------------KESLMH 566
           ++  +  K+ + +   +  ++K                                  S M 
Sbjct: 600 NN--TEDKLYNLLLLRMCRYVKISTETEDTEGSLHCCKDQNINGNGPNGIHEEGSPSEME 657

Query: 567 ADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVE 626
            D  D  S      PS   +S S  ++  ++ S +   T      QL+      F     
Sbjct: 658 TDEPDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEETCKGQLMGHKKRLFTFQFN 717

Query: 627 G-------------------DKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF- 666
                               D+ +R+   S    + +DW   L ++Y   F EN  E F 
Sbjct: 718 NLGNTDINYIKDDTRHIRFDDRQLRLDERS---FLALDWDPDLKKRY---FDENAAEDFE 771

Query: 667 KNGPVTKKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVL 725
           K+  V  K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VL
Sbjct: 772 KHESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVL 831

Query: 726 VIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSG 785
           V+HLKRFSYSR M+ KL+T V+FPI+D ++++++ N N+   + Y L A++NHYGGMG G
Sbjct: 832 VVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGG 890

Query: 786 HYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           HYTA  K  D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 891 HYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 932


>gi|355330276|ref|NP_001239007.1| ubiquitin carboxyl-terminal hydrolase 15 isoform 1 [Homo sapiens]
 gi|28381406|sp|Q9Y4E8.3|UBP15_HUMAN RecName: Full=Ubiquitin carboxyl-terminal hydrolase 15; AltName:
           Full=Deubiquitinating enzyme 15; AltName: Full=Ubiquitin
           thioesterase 15; AltName:
           Full=Ubiquitin-specific-processing protease 15; AltName:
           Full=Unph-2; AltName: Full=Unph4
 gi|5231133|gb|AAD41086.1|AF153604_1 ubiquitin-specific protease homolog [Homo sapiens]
 gi|119617511|gb|EAW97105.1| ubiquitin specific peptidase 15, isoform CRA_b [Homo sapiens]
 gi|355786266|gb|EHH66449.1| Ubiquitin carboxyl-terminal hydrolase 15 [Macaca fascicularis]
          Length = 981

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 311/942 (33%), Positives = 437/942 (46%), Gaps = 161/942 (17%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E   N +GT              +  S    P  S+ S     S S 
Sbjct: 199 QDAGLYQGQVLVIEQ-KNEDGT------------WPRGPSTPKSPGASNFSTLPKISPSS 245

Query: 236 GTSRNHSSEISTS-------PNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMN 288
            ++  ++             P+  + ++ D     S         GL GL NLGNTCFMN
Sbjct: 246 LSNNYNNMNNRNVKNSNYCLPSYTAYKNYD----YSEPGRNNEQPGLCGLSNLGNTCFMN 301

Query: 289 SAIQCLVHTPEFARYFRED-YRREINWQNPLGM--------------------------- 320
           SAIQCL +TP    YF  D Y+ E+N+ NPLGM                           
Sbjct: 302 SAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRA 361

Query: 321 --------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADE 360
                                ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E
Sbjct: 362 FKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEE 421

Query: 361 YWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVF 420
            W NH+ RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V + 
Sbjct: 422 AWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLV 481

Query: 421 TSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLI 479
             D    P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R F  D  +
Sbjct: 482 RMDPLTKPMQYKVVVPKIGNILDLCTALSALSGIP-ADKMIVTDIYNHRFHRIFAMDENL 540

Query: 480 SLSTIKDDDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISR 538
           S    +DD ++    + +    + V + +  R + +       T     +G P + ++ R
Sbjct: 541 SSIMERDDIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGS-SLFGQPFLMAVPR 599

Query: 539 DDVISSGKIQSTVQRMLSPFLK--------------------------------KESLMH 566
           ++  +  K+ + +   +  ++K                                  S M 
Sbjct: 600 NN--TEDKLYNLLLLRMCRYVKISTETEETEGSLHCCKDQNINGNGPNGIHEEGSPSEME 657

Query: 567 ADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVE 626
            D  D  S      PS   +S S  ++  ++ S +   T      QL       F     
Sbjct: 658 TDEPDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTCKGQLTGHKKRLFTFQFN 717

Query: 627 G-------------------DKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF- 666
                               D+ +R+   S    + +DW   L ++Y   F EN  E F 
Sbjct: 718 NLGNTDINYIKDDTRHIRFDDRQLRLDERS---FLALDWDPDLKKRY---FDENAAEDFE 771

Query: 667 KNGPVTKKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVL 725
           K+  V  K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VL
Sbjct: 772 KHESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVL 831

Query: 726 VIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSG 785
           V+HLKRFSYSR M+ KL+T V+FPI+D ++++++ N N+   + Y L A++NHYGGMG G
Sbjct: 832 VVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGG 890

Query: 786 HYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           HYTA  K  D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 891 HYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 932


>gi|114586840|ref|XP_001163407.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 isoform 7 [Pan
           troglodytes]
 gi|397495143|ref|XP_003818420.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 isoform 2 [Pan
           paniscus]
 gi|410227906|gb|JAA11172.1| ubiquitin specific peptidase 4 (proto-oncogene) [Pan troglodytes]
 gi|410259862|gb|JAA17897.1| ubiquitin specific peptidase 4 (proto-oncogene) [Pan troglodytes]
 gi|410289714|gb|JAA23457.1| ubiquitin specific peptidase 4 (proto-oncogene) [Pan troglodytes]
 gi|410353789|gb|JAA43498.1| ubiquitin specific peptidase 4 (proto-oncogene) [Pan troglodytes]
          Length = 915

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 301/916 (32%), Positives = 430/916 (46%), Gaps = 171/916 (18%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 41  WFKQWKKYVGFD----SWDMYNVGEH--------NLFPGPIDNSGLFSDPESQ------T 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 83  LKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 142

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T
Sbjct: 143 CENSDPTNVLS-CHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNT 201

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS 234
           + DA +   Q +++E   N +GT  + ++Q NG                      G+SAS
Sbjct: 202 VQDAGLYQGQVLVIEP-QNEDGTWPRQTLQSNG---------------------SGFSAS 239

Query: 235 KGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCL 294
                  SS I                            GL GL NLGNTCFMNSA+QCL
Sbjct: 240 YNCQEPPSSHIQP--------------------------GLCGLGNLGNTCFMNSALQCL 273

Query: 295 VHTPEFARYF-REDYRREINWQNPLGMV-------------------------------- 321
            +T     YF +++Y  EIN  NPLGM                                 
Sbjct: 274 SNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFKTQVG 333

Query: 322 ---------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHI 366
                          ELLAFLLDGLHEDLNRVK KPY++ KDA+GRPD  VA E W NH 
Sbjct: 334 RFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHR 393

Query: 367 ARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSA 426
            RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL     R M V +  +D   
Sbjct: 394 LRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEVFLVPADPHC 453

Query: 427 LPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTI 484
            P+ Y VTVP  G   DL + L  +  +  +E + VA++ NH   +   +D+    L+ I
Sbjct: 454 RPTQYRVTVPLMGAVSDLCEALSRLSGIA-AENMVVADVYNHRFHKIFQMDE---GLNHI 509

Query: 485 KDDDHLAAYRVPKL-VKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVIS 543
              D +  Y V    V  +  + L    +E++   + T+S    YG PL+ S+ +  +  
Sbjct: 510 MPRDDIFVYEVCSTSVDGSECVTLPVYFRERKSRPSSTSSASALYGQPLLLSVPKHKLTL 569

Query: 544 SGKIQSTVQRMLSPFLKKESLMHADSFDPSSM---------------------------- 575
               Q+   R +S ++K+      D F  S +                            
Sbjct: 570 ESLYQAVCDR-ISRYVKQPL---PDEFGSSPLEPGACNGSRNSCEGEDEEEMEHQEEGKE 625

Query: 576 -VTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPN--LPLQLVDESNVCFDLSVEGD-KTI 631
            ++  + SGE   +   N   E     K    P       LV+        S+  D K +
Sbjct: 626 QLSETEGSGE---DEPGNDPSETTQKIKGQPCPKRLFTFSLVNSYGTADINSLAADGKLL 682

Query: 632 RIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLR 691
           ++ S ST   + +DW  +    Y         E   +    +K +   ++L  C+E F  
Sbjct: 683 KLNSRST---LAMDWDSETRRLYYDEQESEAYEKHVSMLQPQKKKKTTVALRDCIELFTT 739

Query: 692 EEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIH 751
            E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + KL+T V FPI 
Sbjct: 740 METLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIR 799

Query: 752 DFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPIN 811
             N++++V N  S+R  +Y+L A++NHYG MG GHYTA+ K     +WY FDDS++S  +
Sbjct: 800 GLNMSEFVCNL-SARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLAS 858

Query: 812 EDDVKSAAAYVLFYRR 827
           ED + + AAYVLFY+R
Sbjct: 859 EDQIVTKAAYVLFYQR 874


>gi|74220030|dbj|BAE40593.1| unnamed protein product [Mus musculus]
          Length = 952

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 310/936 (33%), Positives = 432/936 (46%), Gaps = 178/936 (19%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      V VY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVGVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLEQIC-IWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E+   +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKEARLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E               ++G   +  S+  V+ S   L     ++A K
Sbjct: 199 QDAGLYQGQVLVIE------------QKNEDGTWPRGPSTPNVKNSNYCLP---SYTAYK 243

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
               +     +  P                        GL GL NLGNTCFMNSAIQCL 
Sbjct: 244 NYDYSEPGRNNEQP------------------------GLCGLSNLGNTCFMNSAIQCLS 279

Query: 296 HTPEFARYFRED-YRREINWQNPLGM---------------------------------- 320
           +TP    YF  D Y+ E+N+ NPLGM                                  
Sbjct: 280 NTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGR 339

Query: 321 -------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E W NH+ 
Sbjct: 340 FAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLK 399

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     R++ V +   D  A 
Sbjct: 400 RNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERSLEVYLVRMDPLAK 459

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTIKD 486
           P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R F  D   +LS+I +
Sbjct: 460 PMQYKVIVPKIGNILDLCTALSALSGVP-ADKMIVTDIYNHRFHRIFAVDE--NLSSIME 516

Query: 487 DDHLAAYRVPKLVKKA-----VFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDV 541
            D +  + +   + +A     V + +  R + +       T     +G P + +I R++ 
Sbjct: 517 RDDIYVFEIN--INRAEDTEHVVIPVCLREKFRHSSYTHHTGS-SLFGQPFLMAIPRNN- 572

Query: 542 ISSGKIQSTVQRMLSPFLK--------------------------------KESLMHADS 569
            +  K+ + +   +  ++K                                  S M  D 
Sbjct: 573 -TEDKLYNLLLLRMCRYVKMSTETEETDGHLRCCEDQNINGNGPNGLHEEGSPSEMETDE 631

Query: 570 FDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVE--G 627
            D  S      PS   +S S  ++  ++ S +   T      QL       F       G
Sbjct: 632 PDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEETCKGQLTGHKKRLFTFQFNNLG 691

Query: 628 DKTIRIPSSSTSIVVY--------------VDWSQKLLEKYNTHFLENLLEVF-KNGPVT 672
           +  I      TS + +              +DW   L ++Y   F EN  E F K+  V 
Sbjct: 692 NNDINYIKDDTSHIRFDDRQLRLDERSFLALDWDPDLKKRY---FDENAAEDFEKHESVE 748

Query: 673 KKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKR 731
            K    P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VLV+HLKR
Sbjct: 749 YKPPKRPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKR 808

Query: 732 FSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHI 791
           FSYSR M+ KL+T V+FPI D ++++++ N N+   + Y L A++NHYGGMG GHYTA  
Sbjct: 809 FSYSRYMRDKLDTLVDFPISDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGGHYTAFA 867

Query: 792 KLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           K  D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 868 KNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 903


>gi|326911484|ref|XP_003202088.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform 2
           [Meleagris gallopavo]
          Length = 953

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 312/935 (33%), Positives = 441/935 (47%), Gaps = 176/935 (18%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D      G    
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKD------GDSQS 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNRLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPGEKETRLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E               ++G   + +S+  V+ S   LS    ++A K
Sbjct: 199 QDAGLYQGQVLVIE------------QKNEDGTWPRGSSTPNVKNSNYCLS---SYTAYK 243

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
               +     +  P                        GL GL NLGNTCFMNSAIQCL 
Sbjct: 244 NYDYSEPGRHNEQP------------------------GLCGLSNLGNTCFMNSAIQCLS 279

Query: 296 HTPEFARYFRED-YRREINWQNPLGM---------------------------------- 320
           +TP    YF  D Y+ E+N+ NPLGM                                  
Sbjct: 280 NTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKYSYVTPRAFKTQVGR 339

Query: 321 -------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E W NH+ 
Sbjct: 340 FAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLK 399

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V +   D  A 
Sbjct: 400 RNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVFLVRMDPLAK 459

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTIK 485
           P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R   +D+   +LS+I 
Sbjct: 460 PMQYKVVVPKIGNILDLCTALSALSGVA-ADKMIVTDIYNHRFHRIFAMDE---NLSSIM 515

Query: 486 DDDHLAAYRVPKLVKKAVFLQLIHR--LQEQEPGAAQTTSQWKAYGTPLVSSISRDDVIS 543
           + D +  + +  + +     Q+I    L+E+    + + S    +G P + ++ R++  +
Sbjct: 516 ERDDIYVFEI-AINRTEDTEQVIIPVCLREKCRHTSYSHSGSSLFGQPFLIAVPRNN--T 572

Query: 544 SGKIQSTVQRMLSPFLK---------------KE-----------------SLMHADSFD 571
             K+ + +   +  ++K               KE                 S M  D  D
Sbjct: 573 EDKLYNLLLLRMCRYVKTCTETDDTEGSLRCCKEHGINGNGPNGIHEEGSPSEMETDEQD 632

Query: 572 PSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVT---LPNLPLQLVDESNVCFDLSVEGD 628
             S      PS   +S S  ++  ++ S +   T       PL    +    F  +  G+
Sbjct: 633 DESSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTCKGQPLTGHKKRLFTFQFNNLGN 692

Query: 629 KTI--------------RIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF-KNGPVTK 673
             I              R P       + +DW  +L ++Y   F ++  E F K+  V  
Sbjct: 693 TDINYIKDDTRHIRFDDRQPRLDERSFLALDWDPELKKRY---FDDSAAEDFEKHESVEY 749

Query: 674 KARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF 732
           K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VLV+HLKRF
Sbjct: 750 KPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRF 809

Query: 733 SYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIK 792
           SYSR M+ KL+T V FPI+D ++++++ N N+   + Y L A++NHYGGMG GHYTA  K
Sbjct: 810 SYSRYMRDKLDTLVGFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGGHYTAFAK 868

Query: 793 LLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             D+ +WY FDDS +S   ED + S AAYVLFY+R
Sbjct: 869 NKDDGKWYYFDDSSVSIACEDQIVSKAAYVLFYQR 903


>gi|417405393|gb|JAA49408.1| Putative ubiquitin carboxyl-terminal hydrolase 15 [Desmodus
           rotundus]
          Length = 952

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 307/938 (32%), Positives = 433/938 (46%), Gaps = 182/938 (19%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E               ++G   +  S+  V+ S   L     ++A K
Sbjct: 199 QDAGLYQGQVLVIE------------QKNEDGTWPRGPSTPNVKNSNYCLP---SYTAYK 243

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
               +     +  P                        GL GL NLGNTCFMNSAIQCL 
Sbjct: 244 NYDYSEPGRNNEQP------------------------GLCGLSNLGNTCFMNSAIQCLS 279

Query: 296 HTPEFARYFRED-YRREINWQNPLGM---------------------------------- 320
           +TP    YF  D Y+ E+N+ NPLGM                                  
Sbjct: 280 NTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGR 339

Query: 321 -------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E W NH+ 
Sbjct: 340 FAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLK 399

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V +   D    
Sbjct: 400 RNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPLTK 459

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTIK 485
           P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R   +D+   +LS+I 
Sbjct: 460 PMQYKVVVPKIGNILDLCTALSALSGVP-ADKMIVTDIFNHRFHRIFAMDE---NLSSII 515

Query: 486 DDDHLAAYRV---PKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVI 542
           + D +  + +        + V + +  R + +       T     +G P + ++ R++  
Sbjct: 516 ERDEIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGS-SLFGQPFLMAVPRNN-- 572

Query: 543 SSGKIQSTVQRMLSPFLK--------------------------------KESLMHADSF 570
           +  K+ + +   +  ++K                                  S M  D  
Sbjct: 573 TEDKLYNLLLLRMCRYVKISTETEDTEGSLHCCKDQNINGNGPNGIHEEGSPSEMETDEP 632

Query: 571 DPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEG--- 627
           D  S      PS   +S S  ++  ++ S +   T      QL       F         
Sbjct: 633 DDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEETCKGQLTGHKKRLFTFQFNNLGN 692

Query: 628 ----------------DKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF-KNGP 670
                           D+ +R+   S    + +DW   L ++Y   F EN  E F K+  
Sbjct: 693 TDINYIKDDTRHIRFDDRQLRLDERS---FLALDWDPDLKKRY---FDENAAEDFEKHES 746

Query: 671 VTKKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHL 729
           V  K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VLV+HL
Sbjct: 747 VEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHL 806

Query: 730 KRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTA 789
           KRFSYSR M+ KL+T V+FPI+D ++++++ N N+   + Y L A++NHYGGMG GHYTA
Sbjct: 807 KRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGGHYTA 865

Query: 790 HIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             K  D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 866 FAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 903


>gi|29747941|gb|AAH50042.1| Ubiquitin specific peptidase 15 [Mus musculus]
          Length = 981

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 317/939 (33%), Positives = 449/939 (47%), Gaps = 155/939 (16%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLEQIC-IWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E+   +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKEARLWNKYVSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGT--NCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSA 233
            DA +   Q +++E   N +GT     S+ +  G     AS+    P  S  S++  ++ 
Sbjct: 199 QDAGLYQGQVLVIEQ-KNEDGTWPRGPSTPKSPG-----ASNFSTLPKISPSSLSNNYNN 252

Query: 234 SKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQC 293
               +  +S+     P+  + ++ D     S         GL GL NLGNTCFMNSAIQC
Sbjct: 253 INNRNVKNSN--YCLPSYTAYKNYD----YSEPGRNNEQPGLCGLSNLGNTCFMNSAIQC 306

Query: 294 LVHTPEFARYFRED-YRREINWQNPLGM-------------------------------- 320
           L +TP    YF  D Y+ E+N+ NPLGM                                
Sbjct: 307 LSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQV 366

Query: 321 ---------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANH 365
                           ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E W NH
Sbjct: 367 GRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENH 426

Query: 366 IARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGS 425
           + RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     R++ V +   D  
Sbjct: 427 LKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERSLEVYLVRMDPL 486

Query: 426 ALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFL--DDPLISLST 483
           A P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R    D+   +LS+
Sbjct: 487 AKPMQYKVIVPKIGNILDLCTALSALSGVP-ADKMIVTDIYNHRFHRIFAVDE---NLSS 542

Query: 484 IKDDDHLAAYRVPKLVKKA-----VFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISR 538
           I + D +  + +   + +A     V + +  R + +       T     +G P + +I R
Sbjct: 543 IMERDDIYVFEIN--INRAEDTEHVVIPVCLREKFRHSSYTHHTGS-SLFGQPFLMAIPR 599

Query: 539 DDVISSGKIQSTVQRMLSPFLK-----KESLMHA-----------------DSFDPSSMV 576
           ++  +  K+ + +   +  ++K     +E+  H                  +   PS M 
Sbjct: 600 NN--TEDKLYNLLLLRMCRYVKMSTETEETDGHLRCCEDQNINGNGPNGLHEEGSPSEME 657

Query: 577 TTVD----------PSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVE 626
           T             PS   +S S  ++  ++ S +   T      QL       F     
Sbjct: 658 TDEPGDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEETCKGQLTGHKKRLFTFQFN 717

Query: 627 --GDKTIRIPSSSTSIVVY--------------VDWSQKLLEKYNTHFLENLLEVF-KNG 669
             G+  I      TS + +              +DW   L ++Y   F EN  E F K+ 
Sbjct: 718 NLGNNDINYIKDDTSHIRFDDRQLRLDERSFLALDWDPDLKKRY---FDENAAEDFEKHE 774

Query: 670 PVTKKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIH 728
            V  K    P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VLV+H
Sbjct: 775 SVEYKPPKRPFVKLKDCIELFTTKEELGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVH 834

Query: 729 LKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYT 788
           LKRFSYSR M+ KL+T V+FPI D ++++++ N N+   + Y L A++NHYGGMG GHYT
Sbjct: 835 LKRFSYSRYMRDKLDTLVDFPISDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGGHYT 893

Query: 789 AHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           A  K  D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 894 AFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 932


>gi|119617510|gb|EAW97104.1| ubiquitin specific peptidase 15, isoform CRA_a [Homo sapiens]
          Length = 984

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 309/935 (33%), Positives = 437/935 (46%), Gaps = 144/935 (15%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E   N +GT  +      G +  K+       +   +S +   +   
Sbjct: 199 QDAGLYQGQVLVIEQ-KNEDGTWPR------GPSTPKSPGASNFSTLPKISPSSLSNNYN 251

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
             +  +SS +  S     +  +      S         GL GL NLGNTCFMNSAIQCL 
Sbjct: 252 NMNNRNSSSVKNSNYCLPSYTAYKNYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLS 311

Query: 296 HTPEFARYFRED-YRREINWQNPLGM---------------------------------- 320
           +TP    YF  D Y+ E+N+ NPLGM                                  
Sbjct: 312 NTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGR 371

Query: 321 -------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E W NH+ 
Sbjct: 372 FAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLK 431

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V +   D    
Sbjct: 432 RNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPLTK 491

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTIKD 486
           P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R F  D  +S    +D
Sbjct: 492 PMQYKVVVPKIGNILDLCTALSALSGIP-ADKMIVTDIYNHRFHRIFAMDENLSSIMERD 550

Query: 487 DDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSG 545
           D ++    + +    + V + +  R + +       T     +G P + ++ R++  +  
Sbjct: 551 DIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGS-SLFGQPFLMAVPRNN--TED 607

Query: 546 KIQSTVQRMLSPFLK--------------------------------KESLMHADSFDPS 573
           K+ + +   +  ++K                                  S M  D  D  
Sbjct: 608 KLYNLLLLRMCRYVKISTETEETEGSLHCCKDQNINGNGPNGIHEEGSPSEMETDEPDDE 667

Query: 574 SMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEG------ 627
           S      PS   +S S  ++  ++ S +   T      QL       F            
Sbjct: 668 SSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTCKGQLTGHKKRLFTFQFNNLGNTDI 727

Query: 628 -------------DKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF-KNGPVTK 673
                        D+ +R+   S    + +DW   L ++Y   F EN  E F K+  V  
Sbjct: 728 NYIKDDTRHIRFDDRQLRLDERS---FLALDWDPDLKKRY---FDENAAEDFEKHESVEY 781

Query: 674 KARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF 732
           K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VLV+HLKRF
Sbjct: 782 KPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRF 841

Query: 733 SYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIK 792
           SYSR M+ KL+T V+FPI+D ++++++ N N+   + Y L A++NHYGGMG GHYTA  K
Sbjct: 842 SYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGGHYTAFAK 900

Query: 793 LLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 901 NKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 935


>gi|345787400|ref|XP_003432923.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 isoform 1 [Canis
           lupus familiaris]
          Length = 917

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 294/917 (32%), Positives = 431/917 (47%), Gaps = 172/917 (18%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 41  WFKQWKKYVGFD----SWDMYNVGEH--------NLFPGPIDNSGLFSDPESQ------T 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 83  LKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 142

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     +   SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T+
Sbjct: 143 CENSNPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTV 202

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E   N +GT  + ++Q NG                      G+SAS 
Sbjct: 203 QDAGLYQGQVLVIEP-QNEDGTWPRQTLQSNG---------------------SGFSASY 240

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
               + SS I                            GL GL NLGNTCFMNSA+QCL 
Sbjct: 241 NCQESPSSHIQP--------------------------GLCGLGNLGNTCFMNSALQCLS 274

Query: 296 HTPEFARYFRED-YRREINWQNPLGMV--------------------------------- 321
           +T     YF +D Y  EIN  NPLGM                                  
Sbjct: 275 NTAPLTDYFLKDKYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDTHVAPRMFKTQVGR 334

Query: 322 --------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELLAFLLDGLHEDLNRVK KPY++ KDA+GRPD  VA E W NH  
Sbjct: 335 FAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRL 394

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL     R M + +  +D    
Sbjct: 395 RNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEIFLVPADPRCR 454

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTIK 485
           P+ Y V VP  G   DL + L  +  +  +E + V ++ NH   +   +D+    L+ I 
Sbjct: 455 PTQYRVVVPLMGAVSDLCEALSRLSGVA-AENMVVTDVYNHRFHKIFQMDE---GLNHIM 510

Query: 486 DDDHLAAYRVPKLV---KKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVI 542
             D +  Y V        + V L +  R ++  P +  T+S    YG PL+ S+++  + 
Sbjct: 511 PRDDIFVYEVCSTSADGSECVTLPVYFRERKSRPSS--TSSGAVLYGQPLLVSVAKHKLT 568

Query: 543 SSGKIQSTVQRMLSPFLKKESLMHADS--FDPSS------------------------MV 576
                Q+  +R +S ++K+     + S   +P +                         +
Sbjct: 569 LESLYQAVCER-ISRYIKQPLPEESGSSPLEPGACNGSRGSCEGEDEEEMEHQEEGKEQL 627

Query: 577 TTVDPSGE-----AHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGD-KT 630
           +  + SGE      H  ++    K      +  T       LV+        S+  D K 
Sbjct: 628 SETEDSGEDELGGDHEETTQKKVKGQPCPKRLFT-----FSLVNSYGTADINSLATDGKL 682

Query: 631 IRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFL 690
           +++ S ST   + +DW  +    Y         E   +    +K +   ++L  C+E F 
Sbjct: 683 LKLNSRST---LAIDWDSETRSLYYDEQESEAYEKHMSMLQPQKKKKTAVALRDCIELFT 739

Query: 691 REEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPI 750
             E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + KL+T V FP+
Sbjct: 740 TMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPV 799

Query: 751 HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPI 810
              N++++V +  S+R  +Y+L A++NHYG MG GHYTA+ K     +WY FDDS++S  
Sbjct: 800 RALNMSEFVCDL-SARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLA 858

Query: 811 NEDDVKSAAAYVLFYRR 827
           +ED + + AAYVLFY+R
Sbjct: 859 SEDQIVTKAAYVLFYQR 875


>gi|149066659|gb|EDM16532.1| ubiquitin specific peptidase 15, isoform CRA_a [Rattus norvegicus]
          Length = 981

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 312/940 (33%), Positives = 434/940 (46%), Gaps = 157/940 (16%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLEQIC-IWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E+   +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKEARLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E   N +GT              +  S    P  S+ S     S S 
Sbjct: 199 QDAGLYQGQVLVIEQ-KNEDGT------------WPRGPSAPKSPGASNFSTLPKISPSS 245

Query: 236 GTSRNHSSEISTS-------PNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMN 288
            ++  ++             P+  + ++ D     S         GL GL NLGNTCFMN
Sbjct: 246 LSNNYNNINNRNVKNSNYCLPSYTAYKNYD----YSEPGRNNEQPGLCGLSNLGNTCFMN 301

Query: 289 SAIQCLVHTPEFARYFRED-YRREINWQNPLGM--------------------------- 320
           SAIQCL +TP    YF  D Y+ E+N+ NPLGM                           
Sbjct: 302 SAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRA 361

Query: 321 --------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADE 360
                                ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E
Sbjct: 362 FKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEE 421

Query: 361 YWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVF 420
            W NH+ RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     R++ V + 
Sbjct: 422 AWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERSLEVYLV 481

Query: 421 TSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLI 479
             D  A P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R F  D  +
Sbjct: 482 RMDPLAKPMQYKVIVPKIGNILDLCTALSALSGVP-ADKMIVTDIYNHRFHRIFAMDENL 540

Query: 480 SLSTIKDDDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISR 538
           S    +DD ++    + +    + V + +  R + +       T     +G P + ++ R
Sbjct: 541 SSIMERDDIYVFEININRTEDTEHVVIPVCLREKFRHSSYTHHTGS-SLFGQPFLMAVPR 599

Query: 539 DD------------VISSGKIQSTVQRMLSPFLKKE------------------SLMHAD 568
           ++            +    K+ +  +    P    E                  S M  D
Sbjct: 600 NNTEDKLYNLLLLRMCRYVKMSTETEETDGPLRCCEDQNINGNGPNGIHEEGSPSEMETD 659

Query: 569 SFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEG- 627
             D  S      PS   +S S  ++  ++ S +   T      QL       F       
Sbjct: 660 EPDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEETCKGQLTGHKKRLFTFQFNNL 719

Query: 628 ------------------DKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF-KN 668
                             D+ +R+   S    + +DW   L ++Y   F EN  E F K+
Sbjct: 720 GNTDINYIKDDTRHIRFDDRQLRLDERS---FLALDWDPDLKKRY---FDENAAEDFEKH 773

Query: 669 GPVTKKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVI 727
             V  K    P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VLV+
Sbjct: 774 ESVEYKPPKRPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVV 833

Query: 728 HLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHY 787
           HLKRFSYSR M+ KL+T V+FPI D ++++++ N N+   + Y L A++NHYGGMG GHY
Sbjct: 834 HLKRFSYSRYMRDKLDTLVDFPISDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGGHY 892

Query: 788 TAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           TA  K  D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 893 TAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 932


>gi|354476435|ref|XP_003500430.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4-like [Cricetulus
           griseus]
          Length = 967

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 296/913 (32%), Positives = 437/913 (47%), Gaps = 118/913 (12%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 45  WFKQWKKYVGFD----SWDMYNVGEH--------NLFPGPIDNSGLFSDPESQ------T 86

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 87  LKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 146

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T
Sbjct: 147 CENSDPTNVLS-CHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNT 205

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQD-NGFAEKKASSVLVEPSKSSLSIAGGWSA 233
           + DA +   Q +++E   N +GT  + ++Q  +  A  +  +   +PS S  S       
Sbjct: 206 IQDAGLYQGQVLVIEP-QNEDGTWPRQTLQSKSSTAPSRNFTTSPKPSASPYSSVSASLI 264

Query: 234 SKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQC 293
           + G   N +S + +S           +       +     GL GL NLGNTCFMNSA+QC
Sbjct: 265 ANGDGTN-TSGMHSSGVSRGGSGFSASYNCQEPQSPHTQPGLCGLGNLGNTCFMNSALQC 323

Query: 294 LVHTPEFARYF-REDYRREINWQNPLGMV------------------------------- 321
           L +T     YF +++Y  EIN  NPLGM                                
Sbjct: 324 LSNTAPLTEYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDTHVAPRMFKTQV 383

Query: 322 ----------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANH 365
                           ELLAF+LDGLHEDLNRVK KPY++ KDA GRPD  VA E W NH
Sbjct: 384 GRFAPQFSGYQQQDSQELLAFILDGLHEDLNRVKKKPYLEPKDASGRPDAVVAKEAWENH 443

Query: 366 IARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGS 425
             RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL     R M V +  +D  
Sbjct: 444 RLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEVFLVPADPQ 503

Query: 426 ALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLST 483
             P    VTVP  G   DL + L  +  +  +E + V ++ NH   +   +D+    LS 
Sbjct: 504 CRPIQCRVTVPLMGAISDLCEALAKLSGIA-AENMVVTDVYNHRFHKIFQMDE---GLSH 559

Query: 484 IKDDDHLAAYRVPKLV---KKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDD 540
           I   D +  Y V        + + L +  R ++  P +  T+S    YG PL+ S+ +  
Sbjct: 560 IMPRDDIFVYEVCNTSMDGSECITLPVYFREKKSRPSS--TSSGAVLYGQPLLVSVPKHK 617

Query: 541 VISSGKIQSTVQRMLSPFLKK-------ESLMHADSFDPSSMVTTVD--------PSGEA 585
           +      Q+   R +S ++K+        S +   + + S      D          G+ 
Sbjct: 618 LTLEALYQAVCDR-ISRYIKQPLPDEFLSSPLEPGACNGSRSSYEGDDDEEMDHQEEGKE 676

Query: 586 H---SNSSSNIAKEDASSSKAVTLPNLP-------LQLVDESNVCFDLSVEGD-KTIRIP 634
           H   +  S    + D  S     +   P         LV+        S+  D K +++ 
Sbjct: 677 HLSETEGSGEDEQGDGPSEPTHKVKGQPGHRRLFTFSLVNSYGTADINSLATDGKLLKLN 736

Query: 635 SSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEP 694
           S ST   + +DW  +    Y         E   +    +K +   ++L  C+E F   E 
Sbjct: 737 SRST---LAIDWDSETRSLYYDQQESEACEKHVSMSQPQKKKKTAVALRECIELFTTMET 793

Query: 695 LVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFN 754
           L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + KL+T V FP+   N
Sbjct: 794 LGEHDPWYCPTCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPVRGLN 853

Query: 755 LTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDD 814
           ++++V ++ S+R  +Y+L A++NHYG MG GHYTA+ K     +WY FDDS++S  +ED 
Sbjct: 854 MSEFVCDR-SARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQ 912

Query: 815 VKSAAAYVLFYRR 827
           + + AAYVLFY+R
Sbjct: 913 IVTKAAYVLFYQR 925


>gi|62898145|dbj|BAD97012.1| ubiquitin specific protease, proto-oncogene isoform a variant [Homo
           sapiens]
          Length = 963

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 307/921 (33%), Positives = 443/921 (48%), Gaps = 133/921 (14%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 41  WFKQWKKYVGFD----SWDMYNVGEH--------NLFPGPIDNSGLFSDPESQ------T 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 83  LKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 142

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T
Sbjct: 143 CENSDPTNVLS-CHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNT 201

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDN-------GFAEKKASSVLVEPSKSSLSI 227
           + DA +   Q +++E   N +GT  + ++Q          F     SS     S S+  I
Sbjct: 202 VQDAGLYQGQVLVIEP-QNEDGTWPRQTLQSKSSTAPSRNFTTSPKSSASPYSSVSASLI 260

Query: 228 AGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFM 287
           A G S S  T   HSS +S   +  SA  +     SS +       GL GL NLGNTCFM
Sbjct: 261 ANGDSTS--TCGMHSSGVSRGGSGFSASYNCQEPPSSHIQP-----GLCGLGNLGNTCFM 313

Query: 288 NSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------------------------- 321
           NSA+QCL +T     YF +++Y  EIN  NPLGM                          
Sbjct: 314 NSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPR 373

Query: 322 ----------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVAD 359
                                 ELLAFLLDGLHEDLNRVK KPY++ KDA+GRPD  VA 
Sbjct: 374 MFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAK 433

Query: 360 EYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTV 419
           E W NH  RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL     R M V +
Sbjct: 434 EAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEVFL 493

Query: 420 FTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDP 477
             +D    P+ Y VTVP  G   DL + L  +  +  +E + VA++ NH   +   +D+ 
Sbjct: 494 VPADPHCRPTQYRVTVPLMGAVSDLCEALSRLSGIA-AENMVVADVYNHRFHKIFQMDE- 551

Query: 478 LISLSTIKDDDHLAAYRVPKL-VKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSI 536
              L+ I   D +  Y V    V  +  + L    +E++   + T+S    YG PL+ S+
Sbjct: 552 --GLNHIMPRDDIFVYEVCSTSVDGSECVTLPVYFRERKSRPSITSSASALYGQPLLLSV 609

Query: 537 SRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSM--------------------- 575
            +  +      Q+   R +S ++K+      D F  S +                     
Sbjct: 610 PKHKLTLESLYQAVCDR-ISRYVKQPL---PDEFGSSPLEPGACNGSRNSCEGEDEEEME 665

Query: 576 --------VTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEG 627
                   ++  + SGE    +  +   +     +          LV+        S+  
Sbjct: 666 HQEEGKEQLSETEGSGEDEPGNDPSETTQKKIKGQPCPKRLFTFSLVNSYGTADINSLAA 725

Query: 628 D-KTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCL 686
           D K +++ S ST   + +DW  +    Y         E   +    +K +   ++L  C+
Sbjct: 726 DGKLLKLNSRST---LAMDWDSETRRLYYDEQESEAYEKHVSMLQPQKKKKTTVALRDCI 782

Query: 687 EAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFV 746
           E F   E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + KL+T V
Sbjct: 783 ELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVV 842

Query: 747 NFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSH 806
            FPI   N++++V N  S+R  +Y+L A++NHYG MG GHYTA+ K     +WY FDDS+
Sbjct: 843 EFPIRGLNMSEFVCNL-SARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSN 901

Query: 807 ISPINEDDVKSAAAYVLFYRR 827
           +S  +ED + + AAYVLFY+R
Sbjct: 902 VSLASEDQIVTKAAYVLFYQR 922


>gi|348515173|ref|XP_003445114.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15 [Oreochromis
           niloticus]
          Length = 1002

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 312/935 (33%), Positives = 444/935 (47%), Gaps = 172/935 (18%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G   +             P  +DNS L+ D      G    
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQNV------------YPGPVDNSGLLKD------GDVLA 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           I + L++  DYIL+P E WN+L SWYG   G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  IKEHLIDELDYILVPTEGWNKLVSWYGLTEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPRGE-CSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                 +   T R SK +TI  + +    +F +  E +  +W+ Y       +N  D T+
Sbjct: 139 CEDSNMDNVITKRFSKADTIDMIEKEMRKLFSIPDEKETRLWNRYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E   N +GT  + S   N           V+ S  SL     +S   
Sbjct: 199 QDAGLYQGQVLVIEQ-KNEDGTWPRGSTAPN-----------VKNSSYSLPSYHPYS--- 243

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
                                  N+   S  + +    GL GL NLGNTCFMNSA+QCL 
Sbjct: 244 -----------------------NSYDYSDQSRQSERSGLCGLSNLGNTCFMNSAVQCLS 280

Query: 296 HTPEFARYFRED-YRREINWQNPLGMV--------------------------------- 321
           +TP    YF +D Y  E+N  NPLGM                                  
Sbjct: 281 NTPPLTEYFLKDKYTDELNEDNPLGMKGEIARAYAELIKQLWSGKYSYVTPRPFKTQVGR 340

Query: 322 --------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELLAFLLDGLHEDLNR++ KPYI+ KDA+GRPD+ VA+E W NHI 
Sbjct: 341 FAPQFSGYQQQDSHELLAFLLDGLHEDLNRIRKKPYIQLKDANGRPDKVVAEEAWENHIK 400

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDSIIVD+  G +KSTLVCPVC+KVSVTFDPF YL+LPL     RT+ V +   D  A 
Sbjct: 401 RNDSIIVDIFHGLFKSTLVCPVCSKVSVTFDPFCYLTLPLPMKKERTLEVYLVRLDPLAK 460

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDD 487
           P+ Y +TVPK G   DL   L N+  +  +E++ V +I NH   R       +LS+I + 
Sbjct: 461 PTQYKLTVPKVGYISDLCTSLSNLSGVP-AEKMIVTDIYNHRFHRIFATNE-NLSSIMER 518

Query: 488 DHLAAYRVP-KLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGK 546
           D +  + V    V+    + +   L+E+   +    +    +G P + ++ R   +S  K
Sbjct: 519 DDIYVFEVAVNRVEDTDHVVIPVHLREKYKQSGYNHTSTPLFGQPFLIAVPR--TLSEDK 576

Query: 547 IQSTVQRMLSPFLKKE---------------------------------SLMHADSFDPS 573
           + + + + L  F++                                   S M  D  D  
Sbjct: 577 LYNMLLQRLCRFVRSSVEEEEDDCEETQPSKQHTVNGNATNGLLEEGSPSEMETDEQDDE 636

Query: 574 SMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPN---------------LPLQLVDESN 618
           S      PS   +S S  ++  ++   +  V   N                  Q  +   
Sbjct: 637 SSQDQELPSENDNSQSEDSVGGDNELENGVVGPQNSTKGQQTSGHNRKRLFTFQFNNMGK 696

Query: 619 VCFDLSVEGDKTIRIPSS----STSIVVYVDWSQKLLEKYNTHFLENLLEVF-KNGPVTK 673
             F L  E  + IR        S    + +DW  ++ +KY   F E ++E F K+  +  
Sbjct: 697 TDFSLIKEDTRQIRFDEGHLRLSDRSYLSLDWEPEIKKKY---FDETVVEDFDKHESMEY 753

Query: 674 KARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF 732
           K + +    L  C+E F  +E L  ED WYCP CK+ +QA+KKLDLW LP VLV+HLKRF
Sbjct: 754 KPQKKAFFKLKDCIELFTTKEKLGAEDPWYCPNCKQHQQATKKLDLWSLPPVLVVHLKRF 813

Query: 733 SYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIK 792
           SYSR M+ KL++ V+FP+ D ++++++ N N+   + Y+L A++NHYGGMG GHYT + K
Sbjct: 814 SYSRYMRDKLDSLVDFPLRDLDMSEFLINPNAGPCR-YDLIAVSNHYGGMGGGHYTGYAK 872

Query: 793 LLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             D+ +WYNFDDS +SP +ED + S AAYVLFY+R
Sbjct: 873 NKDDGKWYNFDDSSVSPASEDQIVSKAAYVLFYQR 907


>gi|417413225|gb|JAA52955.1| Putative ubiquitin carboxyl-terminal hydrolase 15, partial
           [Desmodus rotundus]
          Length = 951

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 311/945 (32%), Positives = 439/945 (46%), Gaps = 167/945 (17%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 7   WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------S 48

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 49  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 108

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 109 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKYMSNTFEPLNKPDSTI 168

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E   N +GT              +  S    P  S+ S     S S 
Sbjct: 169 QDAGLYQGQVLVIEQ-KNEDGT------------WPRGPSTPKSPGASNFSTLPKISPSS 215

Query: 236 GTSRNHSSEISTS-------PNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMN 288
            ++  ++             P+  + ++ D     S         GL GL NLGNTCFMN
Sbjct: 216 LSNNYNNINNRNVKNSNYCLPSYTAYKNYD----YSEPGRNNEQPGLCGLSNLGNTCFMN 271

Query: 289 SAIQCLVHTPEFARYFRED-YRREINWQNPLGM--------------------------- 320
           SAIQCL +TP    YF  D Y+ E+N+ NPLGM                           
Sbjct: 272 SAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRA 331

Query: 321 --------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADE 360
                                ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E
Sbjct: 332 FKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEE 391

Query: 361 YWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVF 420
            W NH+ RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V + 
Sbjct: 392 AWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLV 451

Query: 421 TSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPL 478
             D    P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R   +D+  
Sbjct: 452 RMDPLTKPMQYKVVVPKIGNILDLCTALSALSGVP-ADKMIVTDIFNHRFHRIFAMDE-- 508

Query: 479 ISLSTIKDDDHLAAYRV---PKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSS 535
            +LS+I + D +  + +        + V + +  R + +       T     +G P + +
Sbjct: 509 -NLSSIIERDEIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGS-SLFGQPFLMA 566

Query: 536 ISRDDVISSGKIQSTVQRMLSPFLK--------------------------------KES 563
           + R++  +  K+ + +   +  ++K                                  S
Sbjct: 567 VPRNN--TEDKLYNLLLLRMCRYVKISTETEDTEGSLHCCKDQNINGNGPNGIHEEGSPS 624

Query: 564 LMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDL 623
            M  D  D  S      PS   +S S  ++  ++ S +   T      QL       F  
Sbjct: 625 EMETDEPDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEETCKGQLTGHKKRLFTF 684

Query: 624 SVEG-------------------DKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLE 664
                                  D+ +R+   S    + +DW   L ++Y   F EN  E
Sbjct: 685 QFNNLGNTDINYIKDDTRHIRFDDRQLRLDERS---FLALDWDPDLKKRY---FDENAAE 738

Query: 665 VF-KNGPVTKKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLP 722
            F K+  V  K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP
Sbjct: 739 DFEKHESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLP 798

Query: 723 EVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGM 782
            VLV+HLKRFSYSR M+ KL+T V+FPI+D ++++++ N N+   + Y L A++NHYGGM
Sbjct: 799 PVLVVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGM 857

Query: 783 GSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           G GHYTA  K  D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 858 GGGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 902


>gi|21592289|ref|NP_660185.1| ubiquitin carboxyl-terminal hydrolase 15 [Rattus norvegicus]
 gi|81872777|sp|Q9R085.1|UBP15_RAT RecName: Full=Ubiquitin carboxyl-terminal hydrolase 15; AltName:
           Full=Deubiquitinating enzyme 15; AltName: Full=Ubiquitin
           carboxyl-terminal hydrolase of 109 kDa; AltName:
           Full=Ubiquitin thioesterase 15; AltName:
           Full=Ubiquitin-specific-processing protease 15
 gi|6492122|gb|AAF14188.1|AF106657_1 deubiquitinating enzyme Ubp109 [Rattus norvegicus]
          Length = 952

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 307/933 (32%), Positives = 428/933 (45%), Gaps = 172/933 (18%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLEQIC-IWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E+   +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKEARLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E               ++G   +  S+  V+ S   L     ++A K
Sbjct: 199 QDAGLYQGQVLVIE------------QKNEDGTWPRGPSAPNVKNSNYCLP---SYTAYK 243

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
               +     +  P                        GL GL NLGNTCFMNSAIQCL 
Sbjct: 244 NYDYSEPGRNNEQP------------------------GLCGLSNLGNTCFMNSAIQCLS 279

Query: 296 HTPEFARYFRED-YRREINWQNPLGM---------------------------------- 320
           +TP    YF  D Y+ E+N+ NPLGM                                  
Sbjct: 280 NTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGR 339

Query: 321 -------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E W NH+ 
Sbjct: 340 FAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLK 399

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     R++ V +   D  A 
Sbjct: 400 RNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERSLEVYLVRMDPLAK 459

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTIKD 486
           P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R F  D  +S    +D
Sbjct: 460 PMQYKVIVPKIGNILDLCTALSALSGVP-ADKMIVTDIYNHRFHRIFAMDENLSSIMERD 518

Query: 487 DDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDD----- 540
           D ++    + +    + V + +  R + +       T     +G P + ++ R++     
Sbjct: 519 DIYVFEININRTEDTEHVVIPVCLREKFRHSSYTHHTGS-SLFGQPFLMAVPRNNTEDKL 577

Query: 541 -------VISSGKIQSTVQRMLSPFLKKE------------------SLMHADSFDPSSM 575
                  +    K+ +  +    P    E                  S M  D  D  S 
Sbjct: 578 YNLLLLRMCRYVKMSTETEETDGPLRCCEDQNINGNGPNGIHEEGSPSEMETDEPDDESS 637

Query: 576 VTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEG-------- 627
                PS   +S S  ++  ++ S +   T      +L       F              
Sbjct: 638 QDQELPSENENSQSEDSVGGDNDSENGLCTEETCKGRLTGHKKRLFTFQFNNLGNTDINY 697

Query: 628 -----------DKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF-KNGPVTKKA 675
                      D+ +R+   S    + +DW   L ++Y   F EN  E F K+  V  K 
Sbjct: 698 IKDDTRHIRFDDRQLRLDERS---FLALDWDPDLKKRY---FDENAAEDFEKHESVEYKP 751

Query: 676 RTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
              P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VLV+HLKRFSY
Sbjct: 752 PKRPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSY 811

Query: 735 SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
           SR M+ KL+T V+FPI D ++++++ N N+   + Y L A++NHYGGMG GHYTA  K  
Sbjct: 812 SRYMRDKLDTLVDFPISDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGGHYTAFAKNK 870

Query: 795 DENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 871 DDGKWYYFDDSSVSSASEDQIVSKAAYVLFYQR 903


>gi|338726451|ref|XP_001489901.3| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15 [Equus
           caballus]
          Length = 901

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 301/899 (33%), Positives = 423/899 (47%), Gaps = 163/899 (18%)

Query: 38  PSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLAR 94
           P  IDNS L+ D  A+       + + L++  DYILLP E WN+L SWY    G   +AR
Sbjct: 8   PGPIDNSGLLKDGDAQ------SLKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIAR 61

Query: 95  KVISSGLSQTELAVEVYPLRLQLLVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE- 152
           KV+  G+      VEVY   L+L          T R SK +TI  + +    IF +  E 
Sbjct: 62  KVVEQGMFVKHCKVEVYLTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEK 121

Query: 153 QICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKK 212
           +  +W+ Y       +N  D T+ DA +   Q +  +  +  N         ++G   + 
Sbjct: 122 ETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLFSKKYEQKN---------EDGTWPRG 172

Query: 213 ASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGAS 272
            S+  V+ S   L     ++A K    +     +  P                       
Sbjct: 173 PSAPNVKNSNYCLP---SYTAYKNYDYSEPGRNNEQP----------------------- 206

Query: 273 VGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM----------- 320
            GL GL NLGNTCFMNSAIQCL +TP    YF  D Y+ E+N+ NPLGM           
Sbjct: 207 -GLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAEL 265

Query: 321 ------------------------------------VELLAFLLDGLHEDLNRVKHKPYI 344
                                                ELLAFLLDGLHEDLNR++ KPYI
Sbjct: 266 IKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYI 325

Query: 345 KSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLS 404
           + KDADGRPD+ VA+E W NH+ RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+
Sbjct: 326 QLKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLT 385

Query: 405 LPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAE 464
           LPL     RT+ V +   D    P  Y V VPK G   DL   L  +  +  ++++ V +
Sbjct: 386 LPLPMKKERTLEVYLVRMDPLTKPMQYKVVVPKIGNILDLCTALSALSGVP-ADKMIVTD 444

Query: 465 IQNHSIQRF--LDDPLISLSTIKDDDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQT 521
           I NH   R   +D+ L S+   +DD ++    + +    + V + +  R + +       
Sbjct: 445 IYNHRFHRIFAMDENLTSIME-RDDIYVFEININRTEDTEHVVIPVCLREKFRHSSYTHH 503

Query: 522 TSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLK--------------------- 560
           T     +G P + ++ R++  +  K+ + +   +  ++K                     
Sbjct: 504 TGS-SLFGQPFLMAVPRNN--TEDKLYNLLLLRMCRYVKISTETEETEGSLHCCKDQNIN 560

Query: 561 -----------KESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNL 609
                        S M  D  D  S      PS   +S S  ++  ++ S +   T    
Sbjct: 561 GNGPNGIHEEGSPSEMETDEPDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTC 620

Query: 610 PLQLVDESNVCFDLSVEG-------------------DKTIRIPSSSTSIVVYVDWSQKL 650
             QL       F                         D+ +R+   S    + +DW   L
Sbjct: 621 KGQLTGHKKRLFTFQFNNLGNTDINYIKDDTRHIRFDDRQLRLDERS---FLALDWDPDL 677

Query: 651 LEKYNTHFLENLLEVF-KNGPVTKKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKE 708
            ++Y   F EN  E F K+  V  K   +P   L  C+E F  +E L  ED WYCP CKE
Sbjct: 678 KKRY---FDENAAEDFEKHESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKE 734

Query: 709 RRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQ 768
            +QA+KKLDLW LP VLV+HLKRFSYSR M+ KL+T V+FPI+D ++++++ N N+   +
Sbjct: 735 HQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCR 794

Query: 769 LYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            Y L A++NHYGGMG GHYTA  K  D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 795 -YNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 852


>gi|40795667|ref|NP_955475.1| ubiquitin carboxyl-terminal hydrolase 4 isoform b [Homo sapiens]
 gi|2656143|gb|AAC27356.1| UnpES [Homo sapiens]
 gi|119585373|gb|EAW64969.1| ubiquitin specific peptidase 4 (proto-oncogene), isoform CRA_b
           [Homo sapiens]
 gi|119585377|gb|EAW64973.1| ubiquitin specific peptidase 4 (proto-oncogene), isoform CRA_b
           [Homo sapiens]
          Length = 916

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 297/914 (32%), Positives = 429/914 (46%), Gaps = 166/914 (18%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 41  WFKQWKKYVGFD----SWDMYNVGEH--------NLFPGPIDNSGLFSDPESQ------T 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 83  LKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 142

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T
Sbjct: 143 CENSDPTNVLS-CHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNT 201

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS 234
           + DA +   Q +++E   N +GT  + ++Q NG                      G+SAS
Sbjct: 202 VQDAGLYQGQVLVIEP-QNEDGTWPRQTLQSNG---------------------SGFSAS 239

Query: 235 KGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCL 294
                  SS I                            GL GL NLGNTCFMNSA+QCL
Sbjct: 240 YNCQEPPSSHIQP--------------------------GLCGLGNLGNTCFMNSALQCL 273

Query: 295 VHTPEFARYF-REDYRREINWQNPLGMV-------------------------------- 321
            +T     YF +++Y  EIN  NPLGM                                 
Sbjct: 274 SNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFKTQVG 333

Query: 322 ---------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHI 366
                          ELLAFLLDGLHEDLNRVK KPY++ KDA+GRPD  VA E W NH 
Sbjct: 334 RFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHR 393

Query: 367 ARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSA 426
            RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL     R M V +  +D   
Sbjct: 394 LRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEVFLVPADPHC 453

Query: 427 LPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTI 484
            P+ Y VTVP  G   DL + L  +  +  +E + VA++ NH   +   +D+    L+ I
Sbjct: 454 RPTQYRVTVPLMGAVSDLCEALSRLSGIA-AENMVVADVYNHRFHKIFQMDE---GLNHI 509

Query: 485 KDDDHLAAYRVPKL-VKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVIS 543
              D +  Y V    V  +  + L    +E++   + T+S    YG PL+ S+ +  +  
Sbjct: 510 MPRDDIFVYEVCSTSVDGSECVTLPVYFRERKSRPSSTSSASALYGQPLLLSVPKHKLTL 569

Query: 544 SGKIQSTVQRMLSPFLKKESLMHADSFDPSSM---------------------------- 575
               Q+   R +S ++K+      D F  S +                            
Sbjct: 570 ESLYQAVCDR-ISRYVKQPL---PDEFGSSPLEPGACNGSRNSCEGEDEEEMEHQEEGKE 625

Query: 576 -VTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGD-KTIRI 633
            ++  + SGE    +  +   +     +          LV+        S+  D K +++
Sbjct: 626 QLSETEGSGEDEPGNDPSETTQKKIKGQPCPKRLFTFSLVNSYGTADINSLAADGKLLKL 685

Query: 634 PSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREE 693
            S ST   + +DW  +    Y         E   +    +K +   ++L  C+E F   E
Sbjct: 686 NSRST---LAMDWDSETRRLYYDEQESEAYEKHVSMLQPQKKKKTTVALRDCIELFTTME 742

Query: 694 PLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDF 753
            L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + KL+T V FPI   
Sbjct: 743 TLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGL 802

Query: 754 NLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINED 813
           N++++V N  S+R  +Y+L A++NHYG MG GHYTA+ K     +WY FDDS++S  +ED
Sbjct: 803 NMSEFVCNL-SARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLASED 861

Query: 814 DVKSAAAYVLFYRR 827
            + + AAYVLFY+R
Sbjct: 862 QIVTKAAYVLFYQR 875


>gi|301614077|ref|XP_002936515.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4-like isoform 1
           [Xenopus (Silurana) tropicalis]
          Length = 975

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 308/918 (33%), Positives = 452/918 (49%), Gaps = 132/918 (14%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G S L             P  +DNS L  D   +       
Sbjct: 63  WFKQWKKYVGFDAWDMYNVGESSL------------YPGPVDNSGLFADHDTQ------V 104

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E W +L +WYG   G   + RKV+  GL      VEVY + L+L
Sbjct: 105 LKEHLIDELDYVLVPTEAWKKLMNWYGSVEGQHPIVRKVVEHGLFVKNCKVEVYLIELKL 164

Query: 118 LVMPRGECSTIR-ISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                 E    R  SK +TI  + +   +IF ++ + +  +W+ Y    +  +   + T+
Sbjct: 165 CDDSDPENVIARHFSKADTIDTIEKEMRNIFNISADKETRLWNRYMTNTYEQLTKKESTV 224

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q I++E   N +GT  +     +  A  +  +   +PS SS S +   S + 
Sbjct: 225 QDAGLYQGQMIVIEQR-NADGTWPRQPQTKSSTATSRNFATSGKPSTSSYSTSS--SMTN 281

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
           G S  +S   S+  N      S ++      +++    GL GL NLGNTCFMNSA+QCL 
Sbjct: 282 GDSSTYSQNNSSGLNKGGYTSSYSSYSYREPSSQP---GLCGLSNLGNTCFMNSALQCLS 338

Query: 296 HTPEFARYFRED-YRREINWQNPLGMV--------------------------------- 321
           +TP   RYF  D Y++EIN +NPLGM                                  
Sbjct: 339 NTPPLTRYFVTDEYKKEINRENPLGMKGEIAVAYAELIRQIWSGEHSYVAPRMFKTQVGR 398

Query: 322 --------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELLAFLLDGLHEDLNRVK KPY++ KDA+GRPD  VA E W NH+ 
Sbjct: 399 FAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDSVVAAEAWENHLR 458

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RN+SIIVD+  G +KSTLVCP C+KVSVTFDPF YL+LPL     RTM V    SD    
Sbjct: 459 RNNSIIVDIFHGLFKSTLVCPECSKVSVTFDPFCYLTLPLPMKKDRTMEVFFVRSDPHCK 518

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTIKD 486
           P  Y VTVPK G   DL   L  +  +  +E + V ++ NH   + F  D +  LS I +
Sbjct: 519 PKQYRVTVPKMGVVSDLCSALSKLSEVP-AENMVVTDVYNHRFHKIFQMDEM--LSHIME 575

Query: 487 DDHLAAYRV-PKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRD----DV 541
            D +  Y V P+  ++ V L +  R +      +  T     +G P++ S+ +     DV
Sbjct: 576 RDDIFVYEVKPRKAEEWVTLPICFRERRYRQATSTGTV---LFGQPIMISVPKHNLTLDV 632

Query: 542 ISSGKIQSTVQRMLSPFLKKESL-------------MHADSFDPSSMVTTVDPSGEAHSN 588
           +    ++   + + +P  +  S              ++ D  D            +  +N
Sbjct: 633 LYEIVLERIQRYVKNPHPESYSCSSTDSGACNGSNGIYDDEMDHQEEDADDQEESQEETN 692

Query: 589 SSSNIAKEDASSSKAVTLPN-LPLQLVDESNVCFDLS-VEGDKTIRIPSS--------ST 638
             S+ + E+ +S    +  N +P + +   N  F  S V    T  + S         S+
Sbjct: 693 GQSDESVEEENSEGGCSPCNKMPKKALVCRNRLFAFSLVNSYATADVGSMPAKGYLKLSS 752

Query: 639 SIVVYVDW---SQKLL------EKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAF 689
              V +DW   S+KL       E ++ H  E++ +     P  KK     ++L  C++ F
Sbjct: 753 FATVAIDWDSESKKLFYDDQEAEAFDKH--ESMTQ-----PQKKKVT---VALRECIQLF 802

Query: 690 LREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFP 749
            + E L   D WYCP CK+ ++A+KK DLW LP++LV+HLKRFSY+R  + KL+  V FP
Sbjct: 803 TKTETLGEHDPWYCPHCKKHQRATKKFDLWSLPKILVVHLKRFSYNRFWRDKLDAVVEFP 862

Query: 750 IHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISP 809
           I D N++ +V +  +    +Y+L A++NHYGGMG GHYTA+ K  D+ +WY FDDS +SP
Sbjct: 863 IRDLNMSDFVCDPQAG-PYVYDLVAVSNHYGGMGGGHYTAYAKNQDKGQWYYFDDSSVSP 921

Query: 810 INEDDVKSAAAYVLFYRR 827
            +ED + + AAYVLFY+R
Sbjct: 922 ASEDQIVTKAAYVLFYQR 939


>gi|342187290|ref|NP_001230117.1| ubiquitin specific peptidase 4 (proto-oncogene) [Sus scrofa]
          Length = 963

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 302/920 (32%), Positives = 443/920 (48%), Gaps = 131/920 (14%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 41  WFKQWKKYVGFD----SWDMYNVGEH--------NLFPGPIDNSGLFSDPESQ------T 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 83  LKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 142

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T
Sbjct: 143 CENSDPTNVLS-CHFSKADTIATIEKEMRKLFNIPAERETRLWNRYMSNTYEQLSKLDNT 201

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDN-------GFAEKKASSVLVEPSKSSLSI 227
           + DA +   Q +++E   N +GT  + ++Q          F     SS     S S+  I
Sbjct: 202 VQDAGLYQGQVLVIEP-QNEDGTWPRQTLQSKSSTVPSRNFTTSPKSSASPYSSVSASPI 260

Query: 228 AGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFM 287
           A G   S  TS  HSS +S   +  SA  +     SS V       GL GL NLGNTCFM
Sbjct: 261 ANG--DSTNTSGMHSSGVSRGGSGFSASYNCQESPSSHVQP-----GLCGLGNLGNTCFM 313

Query: 288 NSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------------------------- 321
           NSA+QCL +T     YF +++Y  EIN  NPLGM                          
Sbjct: 314 NSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPR 373

Query: 322 ----------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVAD 359
                                 ELLAFLLDGLHEDLNRVK KPY++ KDA+GRPD  VA 
Sbjct: 374 MFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAK 433

Query: 360 EYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTV 419
           E W NH  RNDS+IVD   G +KSTLVCP C K+SVTFDPF YL+LPL     R M + +
Sbjct: 434 EAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPLKKDRVMEIFL 493

Query: 420 FTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDP 477
             +D    P+ Y V VP  G   DL + L  +  +  +E + V ++ NH   +   +D+ 
Sbjct: 494 VPADPHCRPTQYRVIVPLMGAVSDLCEALSRLSGVA-AENMVVTDVYNHRFHKIFQMDE- 551

Query: 478 LISLSTIKDDDHLAAYRVPKLV---KKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVS 534
              L+ I   D +  Y V        + + L +  R ++  P +  T +    YG PL+ 
Sbjct: 552 --GLNHIMPRDDIFVYEVCSTSMDGSECITLPVYFRERKSRPSSTSTGA--VLYGQPLLV 607

Query: 535 SISRDDVISSGKIQSTVQRMLSPFLKKESLMHADS--FDPSS------------------ 574
           S+ +  +      Q+  +R +S ++K+     + S   +P +                  
Sbjct: 608 SVPKHKLTLEFLYQAVCER-ISRYIKQPLPDESGSSPLEPGACNGSRGSCEGEDEEEMEH 666

Query: 575 ------MVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGD 628
                  ++  + SGE  S S      +     +          LV+        S+  D
Sbjct: 667 QEEGREQLSETEGSGEDESGSDRGETSQKKLKDRPCPERLFTFSLVNSYGTADINSLATD 726

Query: 629 -KTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLE 687
            K +++ S ST   + +DW  +   +Y         E   +    +K +   ++L  C+E
Sbjct: 727 GKLLKLNSRST---LAIDWDSETRNRYYDEQESEAYEKHVSMLQPQKKKKTAVALRDCIE 783

Query: 688 AFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVN 747
            F   E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + KL+T V 
Sbjct: 784 LFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVE 843

Query: 748 FPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHI 807
           FP+   N++++V +  S+R  +Y+L A++NHYG MG GHYTA+ K     +WY FDDS++
Sbjct: 844 FPVRALNMSEFVCDL-SARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNV 902

Query: 808 SPINEDDVKSAAAYVLFYRR 827
           S  +ED + + AAYVLFY+R
Sbjct: 903 SLASEDQIVTKAAYVLFYQR 922


>gi|53759138|ref|NP_997702.1| ubiquitin carboxyl-terminal hydrolase 15 isoform 2 [Gallus gallus]
          Length = 953

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 313/935 (33%), Positives = 439/935 (46%), Gaps = 176/935 (18%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D      G    
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKD------GDSQS 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNRLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPGEKETRLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E   N +GT  + S   N               K+S      ++A K
Sbjct: 199 QDAGLYQGQVLVIEQ-KNEDGTWPRGSSTPN--------------VKNSNYCLPSYTAYK 243

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
               +     +  P                        GL GL NLGNTCFMNSAIQCL 
Sbjct: 244 NYDYSEPGRHNEQP------------------------GLCGLSNLGNTCFMNSAIQCLS 279

Query: 296 HTPEFARYFRED-YRREINWQNPLGM---------------------------------- 320
           +TP    YF  D Y+ E+N+ NPLGM                                  
Sbjct: 280 NTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKYSYVTPRAFKTQVGR 339

Query: 321 -------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E W NH+ 
Sbjct: 340 FAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLK 399

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V +   D  A 
Sbjct: 400 RNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVFLVRMDPLAK 459

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTIK 485
           P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R   +D+   +LS+I 
Sbjct: 460 PMQYKVVVPKIGNILDLCTALSALSGVA-ADKMIVTDIYNHRFHRIFAMDE---NLSSIM 515

Query: 486 DDDHLAAYRVPKLVKKAVFLQLIHR--LQEQEPGAAQTTSQWKAYGTPLVSSISRDDVIS 543
           + D +  + +  + +     Q+I    L+E+    + + S    +G P + ++ R++  +
Sbjct: 516 ERDDIYVFEI-AINRTEDTEQVIIPVCLREKCRHTSYSHSGSSLFGQPFLIAVPRNN--T 572

Query: 544 SGKIQSTVQRMLSPFLK---------------KE-----------------SLMHADSFD 571
             K+ + +   +  ++K               KE                 S M  D  D
Sbjct: 573 EDKLYNLLLLRMCRYVKTCTETDDSEGSLRCCKEHGINGNGPNGIHEEGSPSEMETDEQD 632

Query: 572 PSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVT---LPNLPLQLVDESNVCFDLSVEGD 628
             S      PS   +S S  ++  ++ S +   T       PL    +    F  +  G+
Sbjct: 633 DESSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTCKGQPLTGHKKRLFTFQFNNLGN 692

Query: 629 KTI--------------RIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF-KNGPVTK 673
             I              R P       + +DW  +L ++Y   F ++  E F K+  V  
Sbjct: 693 TDINYIKDDTRHIRFDDRQPRLDERSFLALDWDPELKKRY---FDDSAAEDFEKHESVEY 749

Query: 674 KARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF 732
           K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VLV+HLKRF
Sbjct: 750 KPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRF 809

Query: 733 SYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIK 792
           SYSR M+ KL+T V FPI+D ++++++ N N+   + Y L A++NHYGGMG GHYTA  K
Sbjct: 810 SYSRYMRDKLDTLVGFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGGHYTAFAK 868

Query: 793 LLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             D+ +WY FDDS +S   ED + S AAYVLFY+R
Sbjct: 869 NKDDGKWYYFDDSSVSIACEDQIVSKAAYVLFYQR 903


>gi|395537793|ref|XP_003770874.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15 isoform 1
           [Sarcophilus harrisii]
          Length = 983

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 311/949 (32%), Positives = 447/949 (47%), Gaps = 174/949 (18%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E   N +GT              +  S    P  S+ S     S S 
Sbjct: 199 QDAGLYQGQMLVIEQ-KNEDGT------------WPRGPSTPKSPGASNFSTLPKISPSS 245

Query: 236 GTSRNHSSEISTS-------PNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMN 288
            ++  ++             P+  + ++ D     S         GL GL NLGNTCFMN
Sbjct: 246 LSNNYNNINNRNVKNSNYCLPSYTAYKNYD----YSEPGRNNEQPGLCGLSNLGNTCFMN 301

Query: 289 SAIQCLVHTPEFARYFRED-YRREINWQNPLGM--------------------------- 320
           SAIQCL +TP    YF  D Y+ E+N+ NPLGM                           
Sbjct: 302 SAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKYSYVTPRA 361

Query: 321 --------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADE 360
                                ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E
Sbjct: 362 FKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEE 421

Query: 361 YWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVF 420
            W NH+ RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V + 
Sbjct: 422 AWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLV 481

Query: 421 TSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPL 478
             D    P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R   +D+ L
Sbjct: 482 RMDPLTKPMQYKVVVPKIGNILDLCTALSTLSGVP-ADKMIVTDIYNHRFHRIFAMDENL 540

Query: 479 ISLSTIKDDDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSIS 537
            S+   +DD ++    + +    + V + +  R + +  G +  +     +G P + ++ 
Sbjct: 541 NSIME-RDDIYVFEITINRTEDTEQVIIPVCLREKYRHTGYSHHSGS-SLFGQPFLMAVP 598

Query: 538 RDDVISSGKIQSTVQRMLSPFLKKE--------------------------------SLM 565
           R++  +  K+ + +   +  ++K                                  S M
Sbjct: 599 RNN--TEEKLYNLLLLRMCRYVKTSTETEETEGSLHCCKDQNINGNGPNGIHEECSPSEM 656

Query: 566 HADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLV----------- 614
             D  D  S      PS   +S S  ++  ++ S +   T      QL+           
Sbjct: 657 ETDEPDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEETCKGQLLMGHKKRLFTFQ 716

Query: 615 --------------DESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLE 660
                         D  ++ FD     D+ +R+   S    + +DW  +L ++Y   F +
Sbjct: 717 FNNLGNTDINYIKDDTRHIRFD-----DRQLRLDERS---FLALDWDPELKKRY---FDD 765

Query: 661 NLLEVF-KNGPVTKKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDL 718
           N  E F K+  V  K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDL
Sbjct: 766 NAAEDFEKHESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDL 825

Query: 719 WRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNH 778
           W LP VLV+HLKRFSYSR M+ KL+T V+FPI+D ++++++ N N+   + Y L A++NH
Sbjct: 826 WSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCR-YNLIAVSNH 884

Query: 779 YGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           YGGMG GHYTA  K  D+ +WY FDD+ +S  +ED + S AAYVLFY+R
Sbjct: 885 YGGMGGGHYTAFAKNKDDGKWYYFDDTSVSTGSEDQIVSKAAYVLFYQR 933


>gi|224093937|ref|XP_002186908.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15 isoform 2
           [Taeniopygia guttata]
          Length = 953

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 309/935 (33%), Positives = 439/935 (46%), Gaps = 176/935 (18%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D      G    
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKD------GDSQS 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNRLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPGEKETRLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E               ++G   +  S+  V+ S   L     ++A K
Sbjct: 199 QDAGLYQGQVLVIE------------QKNEDGTWPRGPSTPNVKNSNYCLP---SYTAYK 243

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
               +     +  P                        GL GL NLGNTCFMNSAIQCL 
Sbjct: 244 NYDYSEPGRHNEQP------------------------GLCGLSNLGNTCFMNSAIQCLS 279

Query: 296 HTPEFARYFRED-YRREINWQNPLGM---------------------------------- 320
           +TP    YF  D Y+ E+N+ NPLGM                                  
Sbjct: 280 NTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKYSYVTPRAFKTQVGR 339

Query: 321 -------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E W NH+ 
Sbjct: 340 FAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLK 399

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V +   D  A 
Sbjct: 400 RNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPLAK 459

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTIK 485
           P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R   +D+   +LS+I 
Sbjct: 460 PMQYKVVVPKIGNILDLCTALSALSGVA-ADKMIVTDIYNHRFHRIFGMDE---NLSSIM 515

Query: 486 DDDHLAAYRVPKLVKKAVFLQLIHR--LQEQEPGAAQTTSQWKAYGTPLVSSISRDDVIS 543
           + D +  + +  + +     Q+I    L+E+    + + S    +G P + ++ R++  +
Sbjct: 516 ERDDIYVFEI-AINRTEDTEQVIIPVCLREKCRHTSYSHSGSLLFGQPFLIAVPRNN--T 572

Query: 544 SGKIQSTVQRMLSPFLK--------------------------------KESLMHADSFD 571
             K+ + +   +  ++K                                  S M  D  D
Sbjct: 573 EDKLYNLLLLRMCRYVKTCTESEDTEGSLHCCKDHGINGNGPNGIHEEGSPSEMETDEQD 632

Query: 572 PSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVT---LPNLPLQLVDESNVCFDLSVEGD 628
             S      PS   +S S  ++  ++ S +   T       PL    +    F  +  G+
Sbjct: 633 DESSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTCKGQPLTGHKKRLFTFQFNNLGN 692

Query: 629 KTI--------------RIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF-KNGPVTK 673
             I              R P       + +DW  +L ++Y   F ++  E F K+  V  
Sbjct: 693 TDINYIKDDTRHIRFDDRQPRLDERSFLALDWDPELKKRY---FDDSAAEDFEKHESVEY 749

Query: 674 KARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF 732
           K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VLV+HLKRF
Sbjct: 750 KPSKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRF 809

Query: 733 SYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIK 792
           SYSR M+ KL+T V+FPI+D ++++++ N N+   + Y L A++NHYGGMG GHYTA  K
Sbjct: 810 SYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGGHYTAFAK 868

Query: 793 LLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 869 NKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 903


>gi|426249551|ref|XP_004018513.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 isoform 2 [Ovis
           aries]
          Length = 916

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 290/913 (31%), Positives = 428/913 (46%), Gaps = 164/913 (17%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 41  WFKQWKKYVGFD----SWDMYNVGEH--------NLYPGPIDNSGLFSDPESQ------T 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 83  LKEHLIDELDYVLVPAEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 142

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T
Sbjct: 143 CENSDPTNVLS-CHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNT 201

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS 234
           + DA +   Q +++E   N +GT  + + Q NG                      G+SAS
Sbjct: 202 VQDAGLYQGQVLVIEP-QNEDGTWPRQTQQSNG---------------------SGFSAS 239

Query: 235 KGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCL 294
                +  + +                            GL GL NLGNTCFMNSA+QCL
Sbjct: 240 YNCQESPLTHVQP--------------------------GLCGLGNLGNTCFMNSALQCL 273

Query: 295 VHTPEFARYF-REDYRREINWQNPLGMV-------------------------------- 321
            +T     YF +++Y  EIN  NPLGM                                 
Sbjct: 274 SNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFKTQVG 333

Query: 322 ---------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHI 366
                          ELLAFLLDGLHEDLNRVK KPY++ KDA+GRPD  VA E W NH 
Sbjct: 334 RFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHR 393

Query: 367 ARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSA 426
            RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL     R M + +  +D   
Sbjct: 394 LRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEIFLVPADPRC 453

Query: 427 LPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTI 484
            P+ Y V VP  G   DL + L  +  +  +E + V ++ NH   +   +D+    L+ I
Sbjct: 454 RPTQYRVVVPLMGAVSDLCEALSKLSGIA-AENMVVTDVYNHRFHKIFQMDE---GLNHI 509

Query: 485 KDDDHLAAYRVPKLV---KKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDV 541
              D +  Y V        + V L +  R ++  P +  T +    YG PL+ S+ +  +
Sbjct: 510 MPRDDIFVYEVRSTSPDGSECVTLPVYFRERKSRPSSTSTGA--VLYGQPLLVSVPKHKL 567

Query: 542 ISSGKIQSTVQRMLSPFLKK-------ESLMHADSFDPS-------------------SM 575
                 Q+  +R +S ++K+        S +   + + S                     
Sbjct: 568 TLESLYQAVCER-ISRYIKQPLPDESGSSPLELGACNGSRSGCAGEDEEEMEHQEEGREQ 626

Query: 576 VTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGD-KTIRIP 634
           ++  + SG+    S    A +  S  +          LV+        S+  D K +++ 
Sbjct: 627 LSETEGSGDDEPGSDHGEATQKKSKGRPCPRRLFTFSLVNSYGTADINSLATDGKLLKLT 686

Query: 635 SSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEP 694
           S ST   + +DW  +   +Y         E   +    +K +   ++L  C+E F   E 
Sbjct: 687 SRST---LAIDWDSETRSRYYNEQESETYEKHVSMLQPQKKKKTAVALRDCIELFTTMET 743

Query: 695 LVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFN 754
           L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + KL+T V FP+   N
Sbjct: 744 LGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPVRGLN 803

Query: 755 LTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDD 814
           ++++V +  S+R  +Y+L A++NHYG MG GHYTA+ K     +WY FDDS++S   ED 
Sbjct: 804 MSEFVCDP-SARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLACEDQ 862

Query: 815 VKSAAAYVLFYRR 827
           + + AAYVLFY+R
Sbjct: 863 IVTKAAYVLFYQR 875


>gi|332215940|ref|XP_003257099.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 isoform 2
           [Nomascus leucogenys]
          Length = 916

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 301/918 (32%), Positives = 434/918 (47%), Gaps = 174/918 (18%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 41  WFKQWKKYVGFD----SWDMYNVGEH--------NLFPGPIDNSGLFSDPESQ------T 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 83  LKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 142

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T
Sbjct: 143 CENSDPTNVLS-CHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNT 201

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS 234
           + DA +   Q +++E   N +GT  + ++Q NG                      G+SAS
Sbjct: 202 VQDAGLYQGQVLVIEP-QNEDGTWPRQTLQSNG---------------------SGFSAS 239

Query: 235 KGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCL 294
                  SS I                            GL GL NLGNTCFMNSA+QCL
Sbjct: 240 YNCQEPPSSHIQP--------------------------GLCGLGNLGNTCFMNSALQCL 273

Query: 295 VHTPEFARYF-REDYRREINWQNPLGMV-------------------------------- 321
            +T     YF +++Y  EIN  NPLGM                                 
Sbjct: 274 SNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFKTQVG 333

Query: 322 ---------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHI 366
                          ELLAFLLDGLHEDLNRVK KPY++ KDA GRPD  VA E W NH 
Sbjct: 334 RFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDASGRPDAVVAKEAWENHR 393

Query: 367 ARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSA 426
            RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL     R M V +  +D   
Sbjct: 394 LRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEVFLVPADPHC 453

Query: 427 LPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTI 484
            P+ Y VTVP  G   DL + L  +  +  +E + VA++ NH   +   +D+    L+ I
Sbjct: 454 RPTQYRVTVPLMGAVSDLCEALSRLSGIA-AENMVVADVYNHRFHKIFQMDE---GLNHI 509

Query: 485 KDDDHLAAYRVPKLV---KKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDV 541
              D +  Y V        + V L +  R  E++   + T+S    YG PL+ S+ +  +
Sbjct: 510 MPRDDIFVYEVCSTSMDGSECVMLPVYFR--ERKSRPSSTSSGSALYGQPLLLSVPKHKL 567

Query: 542 ISSGKIQSTVQRMLSPFLKKESLMHADS--FDPSS------------------------M 575
                 Q+   R +S ++K+     + S   +P +                         
Sbjct: 568 TLESLYQAVCDR-ISRYVKQPLPDESGSSPLEPGACNGSRNSCEGEDEEEMEHQEEGKEQ 626

Query: 576 VTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGD-KTIRIP 634
           ++  + SGE    +  +   +     +          LV+        S+  D K +++ 
Sbjct: 627 LSETEGSGEDEPGNDPSETTQKKIKGQPCPKRLFTFSLVNSYGTADINSLATDGKLLKLN 686

Query: 635 SSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKN-----GPVTKKARTEPLSLYTCLEAF 689
           S ST   + +DW     E  + ++ E   E ++       P  KK  T  ++L  C+E F
Sbjct: 687 SRST---LAMDWDS---ETRSLYYDEQESEAYEKHVSMLQPQKKKKTT--MALRDCIELF 738

Query: 690 LREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFP 749
              E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + KL+T V FP
Sbjct: 739 TTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFP 798

Query: 750 IHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISP 809
           I   N++++V N  S+R  +Y+L A++NHYG MG GHYTA+ K     +WY FDDS++S 
Sbjct: 799 IRGLNMSEFVCNL-SARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSL 857

Query: 810 INEDDVKSAAAYVLFYRR 827
            +ED + + AAYVLFY+R
Sbjct: 858 ASEDQIVTKAAYVLFYQR 875


>gi|114051714|ref|NP_001039895.1| ubiquitin carboxyl-terminal hydrolase 15 [Bos taurus]
 gi|359065632|ref|XP_003586138.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15 isoform 2 [Bos
           taurus]
 gi|122135735|sp|Q2HJE4.1|UBP15_BOVIN RecName: Full=Ubiquitin carboxyl-terminal hydrolase 15; AltName:
           Full=Deubiquitinating enzyme 15; AltName: Full=Ubiquitin
           thioesterase 15; AltName:
           Full=Ubiquitin-specific-processing protease 15
 gi|88682918|gb|AAI05522.1| Ubiquitin specific peptidase 15 [Bos taurus]
 gi|296487434|tpg|DAA29547.1| TPA: ubiquitin specific peptidase 15 [Bos taurus]
          Length = 952

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 307/935 (32%), Positives = 431/935 (46%), Gaps = 176/935 (18%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLRDGDAQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E               ++G   +  S+  V+ S   L     ++A K
Sbjct: 199 QDAGLYQGQVLVIE------------QKNEDGTWPRGPSTPNVKNSNYCLP---SYTAYK 243

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
               +     +  P                        GL GL NLGNTCFMNSA QCL 
Sbjct: 244 NYDYSEPGRNNEQP------------------------GLCGLSNLGNTCFMNSAFQCLS 279

Query: 296 HTPEFARYFRED-YRREINWQNPLGM---------------------------------- 320
           +TP    YF  D Y+ E+N+ NPLGM                                  
Sbjct: 280 NTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKYSYVTPRAFKTQVGR 339

Query: 321 -------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E W NH+ 
Sbjct: 340 FAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLK 399

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V +   D    
Sbjct: 400 RNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPLTK 459

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTIKD 486
           P  Y V VPK G   DL   L ++ S   ++++ V +I NH   R F  D  +S    +D
Sbjct: 460 PMQYKVVVPKIGNILDLCTAL-SLLSGVPADKMIVTDIYNHRFHRIFAMDENLSSIMERD 518

Query: 487 DDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSG 545
           D ++    + +    + V + +  R + +       T     +G P + ++ R++  +  
Sbjct: 519 DIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGS-SLFGQPFLMAVPRNN--TED 575

Query: 546 KIQSTVQRMLSPFLK--------------------------------KESLMHADSFDPS 573
           K+ + +   +  ++K                                  S M  D  D  
Sbjct: 576 KLYNLLLVRMCRYVKISTDTEDTEGSLHCCKDQNINGNGPNGIHEEGSPSEMETDEPDDE 635

Query: 574 SMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEG------ 627
           S      PS   +S S  ++  ++ S +   T      QL       F            
Sbjct: 636 SSQDQELPSENENSQSEDSVGGDNDSENGLCTEETCRGQLTGHKKRLFTFQFNNLGNTDI 695

Query: 628 -------------DKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF-KNGPVTK 673
                        D+ +R+   S    + +DW   L ++Y   F EN  E F K+  V  
Sbjct: 696 NYIKDDTRHIRFDDRQLRLDERS---FLALDWDPDLKKRY---FDENAAEDFEKHESVEY 749

Query: 674 KARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF 732
           K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VLV+HLKRF
Sbjct: 750 KPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRF 809

Query: 733 SYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIK 792
           SYSR M+ KL+T V+FPI+D ++++++ N N+   + Y L A++NHYGGMG GHYTA  K
Sbjct: 810 SYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGGHYTAFAK 868

Query: 793 LLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 869 NKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 903


>gi|426249549|ref|XP_004018512.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 isoform 1 [Ovis
           aries]
          Length = 963

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 298/920 (32%), Positives = 437/920 (47%), Gaps = 131/920 (14%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 41  WFKQWKKYVGFD----SWDMYNVGEH--------NLYPGPIDNSGLFSDPESQ------T 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 83  LKEHLIDELDYVLVPAEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 142

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T
Sbjct: 143 CENSDPTNVLS-CHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNT 201

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDN-------GFAEKKASSVLVEPSKSSLSI 227
           + DA +   Q +++E   N +GT  + + Q          F     SS     S S+  I
Sbjct: 202 VQDAGLYQGQVLVIEP-QNEDGTWPRQTQQSKSSTAPSRNFTTSPKSSASPYSSVSASPI 260

Query: 228 AGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFM 287
           A G S +     + S     S   AS    ++ L            GL GL NLGNTCFM
Sbjct: 261 ANGDSTNTSGMHSSSVSRGGSGFSASYNCQESPLTH-------VQPGLCGLGNLGNTCFM 313

Query: 288 NSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------------------------- 321
           NSA+QCL +T     YF +++Y  EIN  NPLGM                          
Sbjct: 314 NSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPR 373

Query: 322 ----------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVAD 359
                                 ELLAFLLDGLHEDLNRVK KPY++ KDA+GRPD  VA 
Sbjct: 374 MFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAK 433

Query: 360 EYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTV 419
           E W NH  RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL     R M + +
Sbjct: 434 EAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEIFL 493

Query: 420 FTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDP 477
             +D    P+ Y V VP  G   DL + L  +  +  +E + V ++ NH   +   +D+ 
Sbjct: 494 VPADPRCRPTQYRVVVPLMGAVSDLCEALSKLSGIA-AENMVVTDVYNHRFHKIFQMDE- 551

Query: 478 LISLSTIKDDDHLAAYRVPKLV---KKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVS 534
              L+ I   D +  Y V        + V L +  R ++  P +  T +    YG PL+ 
Sbjct: 552 --GLNHIMPRDDIFVYEVRSTSPDGSECVTLPVYFRERKSRPSSTSTGA--VLYGQPLLV 607

Query: 535 SISRDDVISSGKIQSTVQRMLSPFLKK-------ESLMHADSFDPS-------------- 573
           S+ +  +      Q+  +R +S ++K+        S +   + + S              
Sbjct: 608 SVPKHKLTLESLYQAVCER-ISRYIKQPLPDESGSSPLELGACNGSRSGCAGEDEEEMEH 666

Query: 574 -----SMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGD 628
                  ++  + SG+    S    A +  S  +          LV+        S+  D
Sbjct: 667 QEEGREQLSETEGSGDDEPGSDHGEATQKKSKGRPCPRRLFTFSLVNSYGTADINSLATD 726

Query: 629 -KTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLE 687
            K +++ S ST   + +DW  +   +Y         E   +    +K +   ++L  C+E
Sbjct: 727 GKLLKLTSRST---LAIDWDSETRSRYYNEQESETYEKHVSMLQPQKKKKTAVALRDCIE 783

Query: 688 AFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVN 747
            F   E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + KL+T V 
Sbjct: 784 LFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVE 843

Query: 748 FPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHI 807
           FP+   N++++V +  S+R  +Y+L A++NHYG MG GHYTA+ K     +WY FDDS++
Sbjct: 844 FPVRGLNMSEFVCDP-SARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNV 902

Query: 808 SPINEDDVKSAAAYVLFYRR 827
           S   ED + + AAYVLFY+R
Sbjct: 903 SLACEDQIVTKAAYVLFYQR 922


>gi|395537795|ref|XP_003770875.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15 isoform 2
           [Sarcophilus harrisii]
          Length = 954

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 307/942 (32%), Positives = 441/942 (46%), Gaps = 189/942 (20%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E               ++G   +  S+  V+ S   L     ++A K
Sbjct: 199 QDAGLYQGQMLVIE------------QKNEDGTWPRGPSTPNVKNSNYCLP---SYTAYK 243

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
               +     +  P                        GL GL NLGNTCFMNSAIQCL 
Sbjct: 244 NYDYSEPGRNNEQP------------------------GLCGLSNLGNTCFMNSAIQCLS 279

Query: 296 HTPEFARYFRED-YRREINWQNPLGM---------------------------------- 320
           +TP    YF  D Y+ E+N+ NPLGM                                  
Sbjct: 280 NTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKYSYVTPRAFKTQVGR 339

Query: 321 -------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E W NH+ 
Sbjct: 340 FAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLK 399

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V +   D    
Sbjct: 400 RNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPLTK 459

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTIK 485
           P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R   +D+ L S+   +
Sbjct: 460 PMQYKVVVPKIGNILDLCTALSTLSGVP-ADKMIVTDIYNHRFHRIFAMDENLNSIME-R 517

Query: 486 DDDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISS 544
           DD ++    + +    + V + +  R + +  G +  +     +G P + ++ R++  + 
Sbjct: 518 DDIYVFEITINRTEDTEQVIIPVCLREKYRHTGYSHHSGS-SLFGQPFLMAVPRNN--TE 574

Query: 545 GKIQSTVQRMLSPFLKKE--------------------------------SLMHADSFDP 572
            K+ + +   +  ++K                                  S M  D  D 
Sbjct: 575 EKLYNLLLLRMCRYVKTSTETEETEGSLHCCKDQNINGNGPNGIHEECSPSEMETDEPDD 634

Query: 573 SSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLV------------------ 614
            S      PS   +S S  ++  ++ S +   T      QL+                  
Sbjct: 635 ESSQDQELPSENENSQSEDSVGGDNDSENGLCTEETCKGQLLMGHKKRLFTFQFNNLGNT 694

Query: 615 -------DESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF- 666
                  D  ++ FD     D+ +R+   S    + +DW  +L ++Y   F +N  E F 
Sbjct: 695 DINYIKDDTRHIRFD-----DRQLRLDERS---FLALDWDPELKKRY---FDDNAAEDFE 743

Query: 667 KNGPVTKKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVL 725
           K+  V  K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VL
Sbjct: 744 KHESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVL 803

Query: 726 VIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSG 785
           V+HLKRFSYSR M+ KL+T V+FPI+D ++++++ N N+   + Y L A++NHYGGMG G
Sbjct: 804 VVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGG 862

Query: 786 HYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           HYTA  K  D+ +WY FDD+ +S  +ED + S AAYVLFY+R
Sbjct: 863 HYTAFAKNKDDGKWYYFDDTSVSTGSEDQIVSKAAYVLFYQR 904


>gi|126335813|ref|XP_001367947.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 isoform 1
           [Monodelphis domestica]
          Length = 965

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 308/921 (33%), Positives = 442/921 (47%), Gaps = 132/921 (14%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G + L             P  IDNS L +D  ++       
Sbjct: 41  WFKQWKKYVGFDSWDMYNVGENNL------------FPGPIDNSGLFSDPESQ------T 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 83  LKEHLIDELDYVLVPTEAWNKLVNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 142

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++  D T
Sbjct: 143 CENSDPTNMLS-CHFSKADTIATIEKEMRKLFNIPDERETRLWNKYMSNTYEQLSKPDNT 201

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS 234
           + DA +   Q +++E   N +GT  + ++Q    +  +A +   + + SS S       +
Sbjct: 202 VQDAGLYQGQVLVIEP-QNEDGTWPRQTLQSKS-STSRAFTTSPKSAASSYSSMSASPIT 259

Query: 235 KGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCL 294
            G S N SS + +S          N+  S   +      GL GL NLGNTCFMNSA+QCL
Sbjct: 260 NGDSAN-SSGVHSSGLSRGGSGFSNSY-SCRESQSHTQPGLCGLGNLGNTCFMNSALQCL 317

Query: 295 VHTPEFARYFRED-YRREINWQNPLGMV-------------------------------- 321
            +T     YF +D Y  EIN  NPLGM                                 
Sbjct: 318 SNTAPLTEYFLKDKYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRNTQVAPRMFKTQVG 377

Query: 322 ---------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHI 366
                          ELLAFLLDGLHEDLNRVK KPY++ KDA+GRPD  VA E W NH 
Sbjct: 378 RFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDLVVAKEAWENHR 437

Query: 367 ARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSA 426
            RNDS+IVD   G +KSTLVCP C+K+SVTFDPF YL+LPL     RTM V + ++D   
Sbjct: 438 LRNDSVIVDTFHGLFKSTLVCPECSKISVTFDPFCYLTLPLPLKKDRTMEVFLVSADPQC 497

Query: 427 LPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTI 484
            P+ Y VTVP  G   DL + L  +  +  +E + V ++ NH   +   +D+    L+ I
Sbjct: 498 RPTQYRVTVPMMGAVSDLCEALSKLSGIA-AENMVVTDVYNHRFHKIFQMDE---GLNHI 553

Query: 485 KDDDHLAAYRVPKLVK---KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDV 541
              D +  Y V    +   + V   +  R  E++     ++S    YG PL+ S+ +  +
Sbjct: 554 MTRDDIFVYEVCNTAEDGSECVTFPVYFR--ERKIRQTSSSSGTVLYGQPLLISVPKHKL 611

Query: 542 ISSGKIQSTVQR----MLSPFLKKESLMHADS--FDPSSMVTTVDPSGEAHSNSSSNIAK 595
                 Q   +R    +  P        H DS  ++ S+ +   +     H + S   A 
Sbjct: 612 TLDYLYQVICERISRYIKHPLPDDSPRPHLDSATYNGSNGICEGEEEEMEHQDDSKGQAT 671

Query: 596 EDASSSKA---------VTLPNLP--------------LQLVDESNVCFDLSVEGD-KTI 631
           E  S S            +  N+P                LV+        S+  D K +
Sbjct: 672 ETESCSTEDCSEHELGNESCQNVPKRVRSQHCKKRLFTFSLVNSYGTTDINSLAADGKLL 731

Query: 632 RIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKN-----GPVTKKARTEPLSLYTCL 686
           ++ S ST   V VDW     E    H+ E   E +        P  KK  T  ++L  C+
Sbjct: 732 KLNSRST---VAVDWD---TETRCLHYDEQESEAYDKHSSMLQPQKKKKTT--VALRDCI 783

Query: 687 EAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFV 746
           E F   E L   D WYCP CK+ +QA+KK DLW LP+VLV+HLKRFSY+R  + KL+T V
Sbjct: 784 ELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKVLVVHLKRFSYNRYWRDKLDTVV 843

Query: 747 NFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSH 806
            FPI D +++++V +  ++   +Y+L A++NHYG MG GHYTA+ K     +WY FDDS+
Sbjct: 844 EFPIRDLHMSEFVCDP-AAGPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSN 902

Query: 807 ISPINEDDVKSAAAYVLFYRR 827
           +S  +ED + + AAYVLFY+R
Sbjct: 903 VSLASEDQIVTKAAYVLFYQR 923


>gi|359065629|ref|XP_003586137.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15 isoform 1 [Bos
           taurus]
          Length = 981

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 311/942 (33%), Positives = 437/942 (46%), Gaps = 161/942 (17%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLRDGDAQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E   N +GT              +  S    P  S+ S     S S 
Sbjct: 199 QDAGLYQGQVLVIEQ-KNEDGT------------WPRGPSTPKSPGASNFSTLPKISPSS 245

Query: 236 GTSRNHSSEISTS-------PNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMN 288
            ++  ++             P+  + ++ D     S         GL GL NLGNTCFMN
Sbjct: 246 LSNNYNNINNRNVKNSNYCLPSYTAYKNYD----YSEPGRNNEQPGLCGLSNLGNTCFMN 301

Query: 289 SAIQCLVHTPEFARYFRED-YRREINWQNPLGM--------------------------- 320
           SA QCL +TP    YF  D Y+ E+N+ NPLGM                           
Sbjct: 302 SAFQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKYSYVTPRA 361

Query: 321 --------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADE 360
                                ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E
Sbjct: 362 FKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEE 421

Query: 361 YWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVF 420
            W NH+ RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V + 
Sbjct: 422 AWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLV 481

Query: 421 TSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLI 479
             D    P  Y V VPK G   DL   L ++ S   ++++ V +I NH   R F  D  +
Sbjct: 482 RMDPLTKPMQYKVVVPKIGNILDLCTAL-SLLSGVPADKMIVTDIYNHRFHRIFAMDENL 540

Query: 480 SLSTIKDDDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISR 538
           S    +DD ++    + +    + V + +  R + +       T     +G P + ++ R
Sbjct: 541 SSIMERDDIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGS-SLFGQPFLMAVPR 599

Query: 539 DDVISSGKIQSTVQRMLSPFLK--------------------------------KESLMH 566
           ++  +  K+ + +   +  ++K                                  S M 
Sbjct: 600 NN--TEDKLYNLLLVRMCRYVKISTDTEDTEGSLHCCKDQNINGNGPNGIHEEGSPSEME 657

Query: 567 ADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVE 626
            D  D  S      PS   +S S  ++  ++ S +   T      QL       F     
Sbjct: 658 TDEPDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEETCRGQLTGHKKRLFTFQFN 717

Query: 627 G-------------------DKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF- 666
                               D+ +R+   S    + +DW   L ++Y   F EN  E F 
Sbjct: 718 NLGNTDINYIKDDTRHIRFDDRQLRLDERS---FLALDWDPDLKKRY---FDENAAEDFE 771

Query: 667 KNGPVTKKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVL 725
           K+  V  K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VL
Sbjct: 772 KHESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVL 831

Query: 726 VIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSG 785
           V+HLKRFSYSR M+ KL+T V+FPI+D ++++++ N N+   + Y L A++NHYGGMG G
Sbjct: 832 VVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGG 890

Query: 786 HYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           HYTA  K  D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 891 HYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 932


>gi|410951167|ref|XP_003982271.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 isoform 2 [Felis
           catus]
          Length = 917

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 294/913 (32%), Positives = 429/913 (46%), Gaps = 164/913 (17%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 41  WFKQWKKYVGFD----SWDMYNVGEH--------NLFPGPIDNSGLFSDPESQ------T 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 83  LKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 142

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T
Sbjct: 143 CENSDPTNVLS-CHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNT 201

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS 234
           + DA +   Q +++E   N +GT  + ++Q NG A                     +SAS
Sbjct: 202 VQDAGLYQGQVLVIEP-QNEDGTWPRQTLQSNGSA---------------------FSAS 239

Query: 235 KGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCL 294
                + SS I                            GL GL NLGNTCFMNSA+QCL
Sbjct: 240 YNCQESPSSHIQP--------------------------GLCGLGNLGNTCFMNSALQCL 273

Query: 295 VHTPEFARYF-REDYRREINWQNPLGMV-------------------------------- 321
            +T     YF +++Y  EIN  NPLGM                                 
Sbjct: 274 SNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFKTQVG 333

Query: 322 ---------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHI 366
                          ELLAFLLDGLHEDLNRVK KPY++ KDA+GRPD  VA E W NH 
Sbjct: 334 RFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHR 393

Query: 367 ARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSA 426
            RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL     R M V +  +D   
Sbjct: 394 LRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEVFLVPADPCC 453

Query: 427 LPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTI 484
            P+ Y V VP  G   DL + L  +  +  +E + V ++ NH   +   +D+    L+ I
Sbjct: 454 RPTQYRVVVPLMGAVSDLCEALSRLSGIA-AENMVVTDVYNHRFHKIFQMDE---GLNHI 509

Query: 485 KDDDHLAAYRVPKLV---KKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDV 541
              D +  Y V        + V L +  R ++  P +  T+S    YG PL+ S+ +  +
Sbjct: 510 MPRDDIFVYEVCSTSADGSECVTLPVYFRERKSRPSS--TSSGAVLYGQPLLVSVPKHKL 567

Query: 542 ISSGKIQSTVQRMLSPFLKKESLMHADS--FDPSSMVTT--------------------- 578
                 Q+  +R +S ++K+     + S   +P +   +                     
Sbjct: 568 TLESLYQAVCER-ISRYIKQPLPDESGSSPLEPGACNGSRGSCEGEDEEEMEHQDEGREQ 626

Query: 579 -VDPSGEAHSNSSSNIAKEDASSSKAVTLPN--LPLQLVDESNVCFDLSVEGD-KTIRIP 634
             D  G       ++  +      K  + P       LV+        S+  D K +++ 
Sbjct: 627 LSDTEGSGEDELGNDCGETTQKKVKGQSCPKRLFTFSLVNSYGTADINSLATDGKLLKLN 686

Query: 635 SSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEP 694
           S ST   + +DW  +    Y         E   +    +K +   ++L  C+E F   E 
Sbjct: 687 SRST---LAIDWDSETRSLYYDEQESEAYEKHVSMLQPQKKKKTAVALRDCIELFTTMET 743

Query: 695 LVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFN 754
           L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + KL+T V FP+   N
Sbjct: 744 LGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPVRALN 803

Query: 755 LTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDD 814
           ++++V +  S+R  +Y+L A++NHYG MG GHYTA+ K     +WY FDDS++S  +ED 
Sbjct: 804 MSEFVCDL-SARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQ 862

Query: 815 VKSAAAYVLFYRR 827
           + + AAYVLFY+R
Sbjct: 863 IVTKAAYVLFYQR 875


>gi|440913379|gb|ELR62836.1| Ubiquitin carboxyl-terminal hydrolase 15 [Bos grunniens mutus]
          Length = 983

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 311/942 (33%), Positives = 437/942 (46%), Gaps = 161/942 (17%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 39  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLRDGDAQ------S 80

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 81  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 140

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 141 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKYMSNTFEPLNKPDSTI 200

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E   N +GT              +  S    P  S+ S     S S 
Sbjct: 201 QDAGLYQGQVLVIEQ-KNEDGT------------WPRGPSTPKSPGASNFSTLPKISPSS 247

Query: 236 GTSRNHSSEISTS-------PNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMN 288
            ++  ++             P+  + ++ D     S         GL GL NLGNTCFMN
Sbjct: 248 LSNNYNNINNRNVKNSNYCLPSYTAYKNYD----YSEPGRNNEQPGLCGLSNLGNTCFMN 303

Query: 289 SAIQCLVHTPEFARYFRED-YRREINWQNPLGM--------------------------- 320
           SA QCL +TP    YF  D Y+ E+N+ NPLGM                           
Sbjct: 304 SAFQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKYSYVTPRA 363

Query: 321 --------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADE 360
                                ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E
Sbjct: 364 FKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEE 423

Query: 361 YWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVF 420
            W NH+ RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V + 
Sbjct: 424 AWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLV 483

Query: 421 TSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLI 479
             D    P  Y V VPK G   DL   L ++ S   ++++ V +I NH   R F  D  +
Sbjct: 484 RMDPLTKPMQYKVVVPKIGNILDLCTAL-SLLSGVPADKMIVTDIYNHRFHRIFAMDENL 542

Query: 480 SLSTIKDDDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISR 538
           S    +DD ++    + +    + V + +  R + +       T     +G P + ++ R
Sbjct: 543 SSIMERDDIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGS-SLFGQPFLMAVPR 601

Query: 539 DDVISSGKIQSTVQRMLSPFLK--------------------------------KESLMH 566
           ++  +  K+ + +   +  ++K                                  S M 
Sbjct: 602 NN--TEDKLYNLLLVRMCRYVKISTDTEDTEGSLHCCKDQNINGNGPNGIHEEGSPSEME 659

Query: 567 ADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVE 626
            D  D  S      PS   +S S  ++  ++ S +   T      QL       F     
Sbjct: 660 TDEPDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEETCRGQLTGHKKRLFTFQFN 719

Query: 627 G-------------------DKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF- 666
                               D+ +R+   S    + +DW   L ++Y   F EN  E F 
Sbjct: 720 NLGNTDINYIKDDTRHIRFDDRQLRLDERS---FLALDWDPDLKKRY---FDENAAEDFE 773

Query: 667 KNGPVTKKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVL 725
           K+  V  K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VL
Sbjct: 774 KHESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVL 833

Query: 726 VIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSG 785
           V+HLKRFSYSR M+ KL+T V+FPI+D ++++++ N N+   + Y L A++NHYGGMG G
Sbjct: 834 VVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGG 892

Query: 786 HYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           HYTA  K  D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 893 HYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 934


>gi|355746701|gb|EHH51315.1| hypothetical protein EGM_10667, partial [Macaca fascicularis]
          Length = 889

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 298/862 (34%), Positives = 423/862 (49%), Gaps = 125/862 (14%)

Query: 65  LLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQLLVM- 120
           L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L    
Sbjct: 13  LIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKLCENS 72

Query: 121 -PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTLDDA 178
            P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T+ DA
Sbjct: 73  DPTNVLS-CHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTVQDA 131

Query: 179 NIQMDQDILVEVLDNVNGTNCKSSIQDNG-------FAEKKASSVLVEPSKSSLSIAGGW 231
            +   Q +++E   N +GT  + ++Q          F     SS     S S+  IA G 
Sbjct: 132 GLYQGQVLVIEP-QNEDGTWPRQTLQSKSSTAPSRNFTTSPKSSASPYSSVSASPIANGD 190

Query: 232 SASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAI 291
           S S  T   HSS +S   +  SA  +     SS +       GL GL NLGNTCFMNSA+
Sbjct: 191 STS--TCGMHSSGVSRGGSGFSASYNYQEPPSSHIQP-----GLCGLGNLGNTCFMNSAL 243

Query: 292 QCLVHTPEFARYF-REDYRREINWQNPLGMV----------------------------- 321
           QCL +T     YF +++Y  EIN  NPLGM                              
Sbjct: 244 QCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFKT 303

Query: 322 ------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWA 363
                             ELLAFLLDGLHEDLNRVK KPY++ KDA+GRPD  VA E W 
Sbjct: 304 QVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWE 363

Query: 364 NHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSD 423
           NH  RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL     R M V +  +D
Sbjct: 364 NHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEVFLVPAD 423

Query: 424 GSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISL 481
               P+ Y VTVP  G   DL + L  +C +  +E + VA++ NH   +   +D+    L
Sbjct: 424 PHCRPTQYRVTVPLMGAVSDLCEALSRLCGIA-AENMVVADVYNHRFHKIFQMDE---GL 479

Query: 482 STIKDDDHLAAYRVPKL-VKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDD 540
           + I   D +  Y+V    V  +  + L    +E++   + TTS    YG PL+ S+ +  
Sbjct: 480 NHIMPRDDIFVYQVCSTSVDGSECVTLPVYFRERKSRPSSTTSGSALYGQPLLLSVPKHK 539

Query: 541 VISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSM------------------------- 575
           +      Q+   R +S ++K+      D F  S +                         
Sbjct: 540 LTLESLYQAVCDR-ISRYVKQPL---PDDFGSSPLEPGTCNGSRNSCEGEDEEEMEHQEE 595

Query: 576 ----VTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGD-KT 630
               ++  + SGE    +      +     +          LV+        S+  D K 
Sbjct: 596 GKEQLSETEGSGEDELGNDPTKTTQKKIKGQPCPKRLFTFSLVNSYGTADINSLATDGKL 655

Query: 631 IRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKN-----GPVTKKARTEPLSLYTC 685
           +++ S ST   + +DW     E  + ++ E   E ++       P  KK  T  ++L  C
Sbjct: 656 LKLNSRST---LAIDWDS---ETRSLYYDEQESEAYEKHVSMLQPQKKKKTT--VALRDC 707

Query: 686 LEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETF 745
           +E F   E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + KL+T 
Sbjct: 708 IELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTV 767

Query: 746 VNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDS 805
           V FPI   N++++V N  S+R  +Y+L A++NHYG MG GHYTA+ K     +WY FDDS
Sbjct: 768 VEFPIRGLNMSEFVCNP-SARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDS 826

Query: 806 HISPINEDDVKSAAAYVLFYRR 827
           ++S  +ED + + AAYVLFY+R
Sbjct: 827 NVSLASEDQIVTKAAYVLFYQR 848


>gi|327272914|ref|XP_003221229.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform 1
           [Anolis carolinensis]
          Length = 981

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 309/938 (32%), Positives = 440/938 (46%), Gaps = 154/938 (16%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D      G    
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKD------GDCQS 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY        +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLLESQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E   N +GT              +  S    P  S+ S     S S 
Sbjct: 199 QDAGLYQGQVLVIEQR-NEDGT------------WPRGPSAPKSPGASNFSTLPKISPSL 245

Query: 236 GTSRNHSSEISTS------PNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNS 289
             + N+ +  +        P+  + ++ D     S         GL GL NLGNTCFMNS
Sbjct: 246 SNNYNNINNRNVKNSNYCLPSYTAYKNYD----YSEPGRHNEQPGLCGLSNLGNTCFMNS 301

Query: 290 AIQCLVHTPEFARYFRED-YRREINWQNPLGM---------------------------- 320
           AIQCL +TP    YF  D Y+ E+N+ NPLGM                            
Sbjct: 302 AIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKYSYVTPRAF 361

Query: 321 -------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEY 361
                               ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E 
Sbjct: 362 KTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEA 421

Query: 362 WANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFT 421
           W NH+ RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     R++ V +  
Sbjct: 422 WENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERSLEVYLVR 481

Query: 422 SDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLI 479
            D  A P  Y V VPK G  +DL   L  +  +  ++++ V +I NH   R   +D+   
Sbjct: 482 MDPLAKPMQYKVVVPKIGNIQDLCTALSTLSGVA-ADKMIVTDIYNHRFHRIFAMDE--- 537

Query: 480 SLSTIKDDDHLAAYRVP---KLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSI 536
           +LS+I + D +  + +        + V + +  R + +  G +  +     +G P + ++
Sbjct: 538 NLSSIMERDDIYVFEIGINRTEDTEQVVIPVCLREKFRHSGYSHHSGS-THFGQPFLIAV 596

Query: 537 SRDDVISSGKIQSTVQRMLSPFLKKESL-------------------------------- 564
            R++  +  K+ + +   +  ++K  S                                 
Sbjct: 597 PRNN--TEDKLYNLLLLRMCRYVKTSSETEDTEASLQCCKDNGINGNGPNGIHEEGSPSE 654

Query: 565 MHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLS 624
           M  D  D  S      PS   +S S  ++  ++ S +   T  +   QL+      F   
Sbjct: 655 METDEQDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEDSCKDQLIGHKKRLFTFQ 714

Query: 625 VE--GDKTIRIPSSSTSIVVYVDWSQKLLEK----------YNTHFL-ENLLEVF-KNGP 670
               G+  I      T  + + D   +L E+          Y   F  EN  E F K+  
Sbjct: 715 FNSLGNTDINYVKDDTRHIRFDDRQLRLDERSFLALDWDPEYKKRFFDENAAEDFEKHES 774

Query: 671 VTKKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHL 729
           V  +   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VLV+HL
Sbjct: 775 VEYRPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHL 834

Query: 730 KRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTA 789
           KRFSYSR M+ KL+T V FPI D ++++++ N N+   + Y L A++NHYGGMG GHYTA
Sbjct: 835 KRFSYSRYMRDKLDTLVEFPITDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGGHYTA 893

Query: 790 HIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             K  D+ +WY FDDS +S  +E+ + S AAYVLFY+R
Sbjct: 894 FAKNKDDGKWYYFDDSSVSTASEEQIVSKAAYVLFYQR 931


>gi|426224799|ref|XP_004006556.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15 isoform 1 [Ovis
           aries]
          Length = 981

 Score =  404 bits (1038), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 311/942 (33%), Positives = 437/942 (46%), Gaps = 161/942 (17%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLRDGDAQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E   N +GT              +  S    P  S+ S     S S 
Sbjct: 199 QDAGLYQGQVLVIEQ-KNEDGT------------WPRGPSTPKSPGASNFSTLPKISPSS 245

Query: 236 GTSRNHSSEISTS-------PNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMN 288
            ++  ++             P+  + ++ D     S         GL GL NLGNTCFMN
Sbjct: 246 LSNNYNNINNRNVKNSNYCLPSYTAYKNYD----YSEPGRNNEQPGLCGLSNLGNTCFMN 301

Query: 289 SAIQCLVHTPEFARYFRED-YRREINWQNPLGM--------------------------- 320
           SA QCL +TP    YF  D Y+ E+N+ NPLGM                           
Sbjct: 302 SAFQCLSNTPPLTEYFLNDKYQDELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRA 361

Query: 321 --------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADE 360
                                ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E
Sbjct: 362 FKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEE 421

Query: 361 YWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVF 420
            W NH+ RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V + 
Sbjct: 422 AWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLV 481

Query: 421 TSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLI 479
             D    P  Y V VPK G   DL   L ++ S   ++++ V +I NH   R F  D  +
Sbjct: 482 RMDPLTKPMQYKVVVPKIGNILDLCTAL-SLLSGVPADKMIVTDIYNHRFHRIFAMDENL 540

Query: 480 SLSTIKDDDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISR 538
           S    +DD ++    + +    + V + +  R + +       T     +G P + ++ R
Sbjct: 541 SSIMERDDIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGS-SLFGQPFLMAVPR 599

Query: 539 DDVISSGKIQSTVQRMLSPFLK--------------------------------KESLMH 566
           ++  +  K+ + +   +  ++K                                  S M 
Sbjct: 600 NN--TEDKLYNLLLVRMCRYVKISTDTEDTEGSLHCCKDQNINGNGPNGIHEEGSPSEME 657

Query: 567 ADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVE 626
            D  D  S      PS   +S S  ++  ++ S +   T      QL       F     
Sbjct: 658 TDEPDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEETCRGQLTGHKKRLFTFQFN 717

Query: 627 G-------------------DKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF- 666
                               D+ +R+   S    + +DW   L ++Y   F EN  E F 
Sbjct: 718 NLGNTDINYIKDDTRHIRFDDRQLRLDERS---FLALDWDPDLKKRY---FDENAAEDFE 771

Query: 667 KNGPVTKKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVL 725
           K+  V  K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VL
Sbjct: 772 KHESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVL 831

Query: 726 VIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSG 785
           V+HLKRFSYSR M+ KL+T V+FPI+D ++++++ N N+   + Y L A++NHYGGMG G
Sbjct: 832 VVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGG 890

Query: 786 HYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           HYTA  K  D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 891 HYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 932


>gi|426224801|ref|XP_004006557.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15 isoform 2 [Ovis
           aries]
          Length = 952

 Score =  404 bits (1038), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 307/935 (32%), Positives = 431/935 (46%), Gaps = 176/935 (18%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLRDGDAQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E               ++G   +  S+  V+ S   L     ++A K
Sbjct: 199 QDAGLYQGQVLVIE------------QKNEDGTWPRGPSTPNVKNSNYCLP---SYTAYK 243

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
               +     +  P                        GL GL NLGNTCFMNSA QCL 
Sbjct: 244 NYDYSEPGRNNEQP------------------------GLCGLSNLGNTCFMNSAFQCLS 279

Query: 296 HTPEFARYFRED-YRREINWQNPLGM---------------------------------- 320
           +TP    YF  D Y+ E+N+ NPLGM                                  
Sbjct: 280 NTPPLTEYFLNDKYQDELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGR 339

Query: 321 -------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E W NH+ 
Sbjct: 340 FAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLK 399

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V +   D    
Sbjct: 400 RNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPLTK 459

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTIKD 486
           P  Y V VPK G   DL   L ++ S   ++++ V +I NH   R F  D  +S    +D
Sbjct: 460 PMQYKVVVPKIGNILDLCTAL-SLLSGVPADKMIVTDIYNHRFHRIFAMDENLSSIMERD 518

Query: 487 DDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSG 545
           D ++    + +    + V + +  R + +       T     +G P + ++ R++  +  
Sbjct: 519 DIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGS-SLFGQPFLMAVPRNN--TED 575

Query: 546 KIQSTVQRMLSPFLK--------------------------------KESLMHADSFDPS 573
           K+ + +   +  ++K                                  S M  D  D  
Sbjct: 576 KLYNLLLVRMCRYVKISTDTEDTEGSLHCCKDQNINGNGPNGIHEEGSPSEMETDEPDDE 635

Query: 574 SMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEG------ 627
           S      PS   +S S  ++  ++ S +   T      QL       F            
Sbjct: 636 SSQDQELPSENENSQSEDSVGGDNDSENGLCTEETCRGQLTGHKKRLFTFQFNNLGNTDI 695

Query: 628 -------------DKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF-KNGPVTK 673
                        D+ +R+   S    + +DW   L ++Y   F EN  E F K+  V  
Sbjct: 696 NYIKDDTRHIRFDDRQLRLDERS---FLALDWDPDLKKRY---FDENAAEDFEKHESVEY 749

Query: 674 KARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF 732
           K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VLV+HLKRF
Sbjct: 750 KPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRF 809

Query: 733 SYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIK 792
           SYSR M+ KL+T V+FPI+D ++++++ N N+   + Y L A++NHYGGMG GHYTA  K
Sbjct: 810 SYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGGHYTAFAK 868

Query: 793 LLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 869 NKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 903


>gi|2459395|gb|AAB72237.1| ubiquitin protease [Homo sapiens]
          Length = 963

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 307/921 (33%), Positives = 444/921 (48%), Gaps = 133/921 (14%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 41  WFKQWKKYVGFD----SWDMYNVGEH--------NLFPGPIDNSGLFSDPESQ------T 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 83  LKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 142

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T
Sbjct: 143 CENSDPTNVLS-CHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNT 201

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDN-------GFAEKKASSVLVEPSKSSLSI 227
           + DA +   Q +++E   N +GT  + ++Q          F     SS     S S+  I
Sbjct: 202 VQDAGLYQGQVLVIEP-QNEDGTWPRQTLQSKSSTAPSRNFTTSPKSSASPYSSVSASLI 260

Query: 228 AGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFM 287
           A G S S  T   HSS +S   +  SA  +     SS +       GL GL NLGNTCFM
Sbjct: 261 ANGDSTS--TCGMHSSGVSRGGSGFSASYNCQEPPSSHIQP-----GLCGLGNLGNTCFM 313

Query: 288 NSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------------------------- 321
           NSA+QCL +T     YF +++Y  EIN  NPLGM                          
Sbjct: 314 NSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPS 373

Query: 322 ----------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVAD 359
                                 ELLAFLLDGLHEDLNRVK KPY++ KDA+GRPD  VA 
Sbjct: 374 MFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAK 433

Query: 360 EYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTV 419
           E W NH  RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL     R M V +
Sbjct: 434 EAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEVFL 493

Query: 420 FTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDP 477
             +D    P+ Y VTVP  G   DL + L  +  +  +E + VA++ NH   +   +D+ 
Sbjct: 494 VPADPHCRPTQYRVTVPLMGAVSDLCEALSRLSGIA-AENMVVADVYNHRFHKIFQMDE- 551

Query: 478 LISLSTIKDDDHLAAYRVPKL-VKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSI 536
              L+ I   D +  Y V    V  +  + L    +E++   + T+S    YG PL+ S+
Sbjct: 552 --GLNHIMPRDDIFVYEVCSTSVDGSECVTLPVYFRERKSRPSSTSSASALYGQPLLLSV 609

Query: 537 SRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSM--------------------- 575
            +  +      Q+   R +S ++K+      D F  S +                     
Sbjct: 610 PKHKLTLESLYQAVCDR-ISRYVKQPL---PDEFGSSPLEPGACNGSRNSCEGEDEEEME 665

Query: 576 --------VTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEG 627
                   ++  + SGE    +  +   +     +          LV+        S+  
Sbjct: 666 HQEEGKEQLSETEGSGEDEPGNDPSETTQKKIKGQPCPKRLFTFSLVNSYGTADINSLAA 725

Query: 628 D-KTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCL 686
           D K +++ S ST   + +DW ++    Y         E   +    +K +   ++L  C+
Sbjct: 726 DGKLLKLNSRST---LAMDWDRETRRLYYDEQESEAYEKHVSMLQPQKKKKTTVALRDCI 782

Query: 687 EAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFV 746
           E F   E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + KL+T V
Sbjct: 783 ELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVV 842

Query: 747 NFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSH 806
            FPI   N++++V N  S+R  +Y+L A++NHYG MG GHYTA+ K     +WY FDDS+
Sbjct: 843 EFPIRGLNMSEFVCNL-SARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSN 901

Query: 807 ISPINEDDVKSAAAYVLFYRR 827
           +S  +ED + + AAYVLFY+R
Sbjct: 902 VSLASEDQIVTKAAYVLFYQR 922


>gi|344275822|ref|XP_003409710.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4-like isoform 2
           [Loxodonta africana]
          Length = 914

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 300/915 (32%), Positives = 433/915 (47%), Gaps = 171/915 (18%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 41  WFKQWKKYVGFD----SWDMYNVGEH--------NLFPGPIDNSGLFSDPESQ------T 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 83  LKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 142

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T
Sbjct: 143 CENSDPTNVLSC-HFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNT 201

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS 234
           + DA +   Q +++E   N +GT  + ++Q NG                      G+SAS
Sbjct: 202 VQDAGLYQGQVLVIEP-QNEDGTWPRQTLQPNG---------------------SGFSAS 239

Query: 235 KGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCL 294
                + SS I                            GL GL NLGNTCFMNSA+QCL
Sbjct: 240 YNCQESPSSHIQP--------------------------GLCGLGNLGNTCFMNSALQCL 273

Query: 295 VHTPEFARYF-REDYRREINWQNPLGMV-------------------------------- 321
            +T     YF +++Y  EIN  NPLGM                                 
Sbjct: 274 SNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDTHVAPRMFKTQVG 333

Query: 322 ---------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHI 366
                          ELLAFLLDGLHEDLNRVK KPY++ KDA+GRPD  VA E W NH 
Sbjct: 334 RFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHR 393

Query: 367 ARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSA 426
            RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL     R M V +  +D   
Sbjct: 394 LRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRIMEVFLVPADPCC 453

Query: 427 LPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTI 484
            P+ Y VTVP  G   DL + L  +  +  +E + V ++ NH   +   +D+    L+ I
Sbjct: 454 RPTQYRVTVPLMGAVSDLCEALSRLSGIA-AENMVVTDVYNHRFHKIFQMDE---GLNHI 509

Query: 485 KDDDHLAAYRVPKLV---KKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDV 541
              D +  Y V        + V L +  R ++  P +  T+S    YG PL+ S+ +  +
Sbjct: 510 MPRDDIFVYEVCSASADGSECVTLPVYFRERKSRPSS--TSSGAVLYGQPLLLSVPKHKL 567

Query: 542 ISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIA-----KE 596
                 Q+  +R +S ++K + L       P  +       G         +      KE
Sbjct: 568 TLESLYQAVCER-ISRYIK-QPLPDEPGSSPLELGACNGSRGSCEGEQEEEMEHQEEGKE 625

Query: 597 D--------------ASSSKAVTLPNLPLQLVDESNV-------CFDLSVEGDKTIRIPS 635
           +               +  K V     P +L   S V          L+ +G K +++ S
Sbjct: 626 ELSETEGSGEEELGSETIQKKVEGQTCPKRLFTFSLVNSYGTADINSLATDG-KLLKLNS 684

Query: 636 SSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVT---KKARTEPLSLYTCLEAFLRE 692
            ST   + +DW     E  N ++ E   E ++        +K +   ++L  C+E F   
Sbjct: 685 RST---LAIDWDS---ETRNLYYDEQESEAYEKHVSMLQPQKKKKTSVALRDCIELFTTM 738

Query: 693 EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHD 752
           E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + KL+T V FP+  
Sbjct: 739 ETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPVRA 798

Query: 753 FNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINE 812
            N++++V +  S+R  +Y+L A++NHYG MG GHYTA+ K     +WY FDDS +S  +E
Sbjct: 799 LNMSEFVCDL-SARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSSVSLASE 857

Query: 813 DDVKSAAAYVLFYRR 827
           D + + AAYVLFY+R
Sbjct: 858 DQIVTKAAYVLFYQR 872


>gi|114586836|ref|XP_001163445.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 isoform 8 [Pan
           troglodytes]
 gi|397495141|ref|XP_003818419.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 isoform 1 [Pan
           paniscus]
 gi|410227908|gb|JAA11173.1| ubiquitin specific peptidase 4 (proto-oncogene) [Pan troglodytes]
 gi|410259864|gb|JAA17898.1| ubiquitin specific peptidase 4 (proto-oncogene) [Pan troglodytes]
 gi|410289716|gb|JAA23458.1| ubiquitin specific peptidase 4 (proto-oncogene) [Pan troglodytes]
 gi|410353791|gb|JAA43499.1| ubiquitin specific peptidase 4 (proto-oncogene) [Pan troglodytes]
          Length = 962

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 311/923 (33%), Positives = 444/923 (48%), Gaps = 138/923 (14%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 41  WFKQWKKYVGFD----SWDMYNVGEH--------NLFPGPIDNSGLFSDPESQ------T 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 83  LKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 142

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T
Sbjct: 143 CENSDPTNVLS-CHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNT 201

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDN-------GFAEKKASSVLVEPSKSSLSI 227
           + DA +   Q +++E   N +GT  + ++Q          F     SS     S S+  I
Sbjct: 202 VQDAGLYQGQVLVIEP-QNEDGTWPRQTLQSKSSTAPSRNFTTSPKSSASPYSSVSASLI 260

Query: 228 AGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFM 287
           A G S S  T   HSS +S   +  SA  +     SS +       GL GL NLGNTCFM
Sbjct: 261 ANGDSTS--TCGMHSSGVSRGGSGFSASYNCQEPPSSHIQP-----GLCGLGNLGNTCFM 313

Query: 288 NSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------------------------- 321
           NSA+QCL +T     YF +++Y  EIN  NPLGM                          
Sbjct: 314 NSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPR 373

Query: 322 ----------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVAD 359
                                 ELLAFLLDGLHEDLNRVK KPY++ KDA+GRPD  VA 
Sbjct: 374 MFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAK 433

Query: 360 EYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTV 419
           E W NH  RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL     R M V +
Sbjct: 434 EAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEVFL 493

Query: 420 FTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDP 477
             +D    P+ Y VTVP  G   DL + L  +  +  +E + VA++ NH   +   +D+ 
Sbjct: 494 VPADPHCRPTQYRVTVPLMGAVSDLCEALSRLSGIA-AENMVVADVYNHRFHKIFQMDE- 551

Query: 478 LISLSTIKDDDHLAAYRVPKL-VKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSI 536
              L+ I   D +  Y V    V  +  + L    +E++   + T+S    YG PL+ S+
Sbjct: 552 --GLNHIMPRDDIFVYEVCSTSVDGSECVTLPVYFRERKSRPSSTSSASALYGQPLLLSV 609

Query: 537 SRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSM--------------------- 575
            +  +      Q+   R +S ++K+      D F  S +                     
Sbjct: 610 PKHKLTLESLYQAVCDR-ISRYVKQPL---PDEFGSSPLEPGACNGSRNSCEGEDEEEME 665

Query: 576 --------VTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPN--LPLQLVDESNVCFDLSV 625
                   ++  + SGE   +   N   E     K    P       LV+        S+
Sbjct: 666 HQEEGKEQLSETEGSGE---DEPGNDPSETTQKIKGQPCPKRLFTFSLVNSYGTADINSL 722

Query: 626 EGD-KTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYT 684
             D K +++ S ST   + +DW  +    Y         E   +    +K +   ++L  
Sbjct: 723 AADGKLLKLNSRST---LAMDWDSETRRLYYDEQESEAYEKHVSMLQPQKKKKTTVALRD 779

Query: 685 CLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLET 744
           C+E F   E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + KL+T
Sbjct: 780 CIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDT 839

Query: 745 FVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDD 804
            V FPI   N++++V N  S+R  +Y+L A++NHYG MG GHYTA+ K     +WY FDD
Sbjct: 840 VVEFPIRGLNMSEFVCNL-SARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDD 898

Query: 805 SHISPINEDDVKSAAAYVLFYRR 827
           S++S  +ED + + AAYVLFY+R
Sbjct: 899 SNVSLASEDQIVTKAAYVLFYQR 921


>gi|432097481|gb|ELK27673.1| Ubiquitin carboxyl-terminal hydrolase 15, partial [Myotis davidii]
          Length = 951

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 310/942 (32%), Positives = 436/942 (46%), Gaps = 161/942 (17%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 7   WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------S 48

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 49  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 108

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 109 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKYMSNTFEPLNKPDSTI 168

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E   N +GT              +  S    P  S+ S     S S 
Sbjct: 169 QDAGLYQGQVLVIEQ-KNEDGT------------WPRGPSTPKSPGASNFSTLPKISPSS 215

Query: 236 GTSRNHSSEISTS-------PNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMN 288
            ++  ++             P+  + ++ D     S         GL GL NLGNTCFMN
Sbjct: 216 LSNNYNNINNRNVKNSNYCLPSYTAYKNYD----YSEPGRNNEQPGLCGLSNLGNTCFMN 271

Query: 289 SAIQCLVHTPEFARYFRED-YRREINWQNPLGM--------------------------- 320
           SAIQCL +TP    YF  D Y+ E+N+ NPLGM                           
Sbjct: 272 SAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRA 331

Query: 321 --------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADE 360
                                ELLAFLLDGLHEDLNR++ KPYI+ KDADGR D+ VA+E
Sbjct: 332 FKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRADKVVAEE 391

Query: 361 YWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVF 420
            W NH+ RNDSIIVD+  G +KSTLVCP C+K+SVTFDPF YL+LPL     RT+ V + 
Sbjct: 392 AWENHLKRNDSIIVDIFHGLFKSTLVCPKCDKISVTFDPFCYLTLPLPMKKERTLEVYLV 451

Query: 421 TSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLI 479
             D    P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R F  D  +
Sbjct: 452 RMDPLTKPMQYKVIVPKIGNILDLCTALSALSGVP-ADKMIVTDIYNHRFHRIFTMDENL 510

Query: 480 SLSTIKDDDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISR 538
           S    +DD ++    + +    + V + +  R + +       T     +G P + ++ R
Sbjct: 511 SSIMERDDIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGS-SLFGQPFLMAVPR 569

Query: 539 DDVISSGKIQSTVQRMLSPFLK--------------------------------KESLMH 566
           ++  +  K+ + +   +  ++K                                  S M 
Sbjct: 570 NN--TEDKLYNLLLLRMCRYVKISTETEDTEGSLHCCKDQNINGNGPNGIHEEGSPSEME 627

Query: 567 ADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVE 626
            D  D  S      PS   +S S  ++  ++ S +   T      QL       F     
Sbjct: 628 TDEPDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEETCKGQLTGHKKRLFTFQFN 687

Query: 627 G-------------------DKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF- 666
                               D+ +R+   S    + +DW   L ++Y   F EN  E F 
Sbjct: 688 NLGNTDTNYIKDDTRHIRFDDRQLRLDERS---FLALDWDPDLKKRY---FDENAAEDFE 741

Query: 667 KNGPVTKKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVL 725
           K+  V  K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VL
Sbjct: 742 KHESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVL 801

Query: 726 VIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSG 785
           V+HLKRFSYSR M+ KL+T V+FPI D ++++++ N N+   + Y L A++NHYGGMG G
Sbjct: 802 VVHLKRFSYSRYMRDKLDTLVDFPIIDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGG 860

Query: 786 HYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           HYTA  K  D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 861 HYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 902


>gi|444721227|gb|ELW61972.1| Ubiquitin carboxyl-terminal hydrolase 15 [Tupaia chinensis]
          Length = 952

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 308/935 (32%), Positives = 433/935 (46%), Gaps = 176/935 (18%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY        +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLMESQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E   N +GT  +     N             P  S+  +   ++A K
Sbjct: 199 QDAGLYQGQVLVIEQ-KNEDGTWPRGPSAPN-------------PKNSNYCLPS-YTAYK 243

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
                          L   R+++               GL GL NLGNTCFMNSAIQCL 
Sbjct: 244 NYDY-----------LEPGRNNEQP-------------GLCGLSNLGNTCFMNSAIQCLS 279

Query: 296 HTPEFARYFRED-YRREINWQNPLGM---------------------------------- 320
           +TP    YF  D Y+ E+N+ NPLGM                                  
Sbjct: 280 NTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGR 339

Query: 321 -------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E W NH+ 
Sbjct: 340 FAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKIVAEEAWENHLK 399

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V +   D    
Sbjct: 400 RNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPLTK 459

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTIKD 486
           P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R F  D  +S    +D
Sbjct: 460 PMQYKVVVPKIGNILDLCTALSALSGVP-ADKMIVTDIYNHRFHRIFAMDENLSSIMERD 518

Query: 487 DDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSG 545
           D ++    + +    + V + +  R + +       T     +G P + ++ R++  +  
Sbjct: 519 DIYVFEININRTEDTEHVVIPVCLREKFRHSSYTHHTGS-SLFGQPFLMAVPRNN--TED 575

Query: 546 KIQSTVQRMLSPFLK--------------------------------KESLMHADSFDPS 573
           K+ + +   +  ++K                                  S M  D  D  
Sbjct: 576 KLYNLLLLRMCRYVKISTDTEETEGSLHCCKDQNINGNGPNGIHEEGSPSEMETDEPDDE 635

Query: 574 SMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEG------ 627
           S      PS   +S S  ++  ++ S +   T      QL+      F            
Sbjct: 636 SSQDQELPSENENSQSEDSVGGDNDSENGLCTEETCKGQLMGHKKRLFTFQFNNLGNTDI 695

Query: 628 -------------DKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF-KNGPVTK 673
                        D+ +R+   S    + +DW   L ++Y   F EN  E F K+  V  
Sbjct: 696 NYIKDDTRHIRFDDRQLRLDERS---FLALDWDPDLKKRY---FDENAAEDFEKHESVEY 749

Query: 674 KARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF 732
           K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VLV+HLKRF
Sbjct: 750 KPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRF 809

Query: 733 SYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIK 792
           SYSR M+ KL+T V+FPI+D ++++++ N N+   + Y L A++NHYGGMG GHYTA  K
Sbjct: 810 SYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGGHYTAFAK 868

Query: 793 LLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 869 NKDDGKWYYFDDSSVSIASEDQIVSKAAYVLFYQR 903


>gi|40795665|ref|NP_003354.2| ubiquitin carboxyl-terminal hydrolase 4 isoform a [Homo sapiens]
 gi|116242839|sp|Q13107.3|UBP4_HUMAN RecName: Full=Ubiquitin carboxyl-terminal hydrolase 4; AltName:
           Full=Deubiquitinating enzyme 4; AltName: Full=Ubiquitin
           thioesterase 4; AltName:
           Full=Ubiquitin-specific-processing protease 4; AltName:
           Full=Ubiquitous nuclear protein homolog
 gi|2656141|gb|AAC27355.1| UnpEL [Homo sapiens]
 gi|115527981|gb|AAI25131.1| Ubiquitin specific peptidase 4 (proto-oncogene) [Homo sapiens]
 gi|119585375|gb|EAW64971.1| ubiquitin specific peptidase 4 (proto-oncogene), isoform CRA_d
           [Homo sapiens]
 gi|119585376|gb|EAW64972.1| ubiquitin specific peptidase 4 (proto-oncogene), isoform CRA_d
           [Homo sapiens]
 gi|158257022|dbj|BAF84484.1| unnamed protein product [Homo sapiens]
          Length = 963

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 307/921 (33%), Positives = 443/921 (48%), Gaps = 133/921 (14%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 41  WFKQWKKYVGFD----SWDMYNVGEH--------NLFPGPIDNSGLFSDPESQ------T 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 83  LKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 142

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T
Sbjct: 143 CENSDPTNVLS-CHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNT 201

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDN-------GFAEKKASSVLVEPSKSSLSI 227
           + DA +   Q +++E   N +GT  + ++Q          F     SS     S S+  I
Sbjct: 202 VQDAGLYQGQVLVIEP-QNEDGTWPRQTLQSKSSTAPSRNFTTSPKSSASPYSSVSASLI 260

Query: 228 AGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFM 287
           A G S S  T   HSS +S   +  SA  +     SS +       GL GL NLGNTCFM
Sbjct: 261 ANGDSTS--TCGMHSSGVSRGGSGFSASYNCQEPPSSHIQP-----GLCGLGNLGNTCFM 313

Query: 288 NSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------------------------- 321
           NSA+QCL +T     YF +++Y  EIN  NPLGM                          
Sbjct: 314 NSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPR 373

Query: 322 ----------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVAD 359
                                 ELLAFLLDGLHEDLNRVK KPY++ KDA+GRPD  VA 
Sbjct: 374 MFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAK 433

Query: 360 EYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTV 419
           E W NH  RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL     R M V +
Sbjct: 434 EAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEVFL 493

Query: 420 FTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDP 477
             +D    P+ Y VTVP  G   DL + L  +  +  +E + VA++ NH   +   +D+ 
Sbjct: 494 VPADPHCRPTQYRVTVPLMGAVSDLCEALSRLSGIA-AENMVVADVYNHRFHKIFQMDE- 551

Query: 478 LISLSTIKDDDHLAAYRVPKL-VKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSI 536
              L+ I   D +  Y V    V  +  + L    +E++   + T+S    YG PL+ S+
Sbjct: 552 --GLNHIMPRDDIFVYEVCSTSVDGSECVTLPVYFRERKSRPSSTSSASALYGQPLLLSV 609

Query: 537 SRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSM--------------------- 575
            +  +      Q+   R +S ++K+      D F  S +                     
Sbjct: 610 PKHKLTLESLYQAVCDR-ISRYVKQPL---PDEFGSSPLEPGACNGSRNSCEGEDEEEME 665

Query: 576 --------VTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEG 627
                   ++  + SGE    +  +   +     +          LV+        S+  
Sbjct: 666 HQEEGKEQLSETEGSGEDEPGNDPSETTQKKIKGQPCPKRLFTFSLVNSYGTADINSLAA 725

Query: 628 D-KTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCL 686
           D K +++ S ST   + +DW  +    Y         E   +    +K +   ++L  C+
Sbjct: 726 DGKLLKLNSRST---LAMDWDSETRRLYYDEQESEAYEKHVSMLQPQKKKKTTVALRDCI 782

Query: 687 EAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFV 746
           E F   E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + KL+T V
Sbjct: 783 ELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVV 842

Query: 747 NFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSH 806
            FPI   N++++V N  S+R  +Y+L A++NHYG MG GHYTA+ K     +WY FDDS+
Sbjct: 843 EFPIRGLNMSEFVCNL-SARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSN 901

Query: 807 ISPINEDDVKSAAAYVLFYRR 827
           +S  +ED + + AAYVLFY+R
Sbjct: 902 VSLASEDQIVTKAAYVLFYQR 922


>gi|345787398|ref|XP_533829.3| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 isoform 2 [Canis
           lupus familiaris]
          Length = 964

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 304/924 (32%), Positives = 444/924 (48%), Gaps = 139/924 (15%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 41  WFKQWKKYVGFD----SWDMYNVGEH--------NLFPGPIDNSGLFSDPESQ------T 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 83  LKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 142

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     +   SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T+
Sbjct: 143 CENSNPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTV 202

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNG-------FAEKKASSVLVEPSKSSLSIA 228
            DA +   Q +++E   N +GT  + ++Q          F     SS     S S+  IA
Sbjct: 203 QDAGLYQGQVLVIEP-QNEDGTWPRQTLQSKSSTAPSRNFPTSPTSSASPYSSVSASPIA 261

Query: 229 GGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMN 288
            G   S  TS  HSS +S   +  SA  +     SS +       GL GL NLGNTCFMN
Sbjct: 262 NG--DSTNTSGMHSSGVSRGGSGFSASYNCQESPSSHIQP-----GLCGLGNLGNTCFMN 314

Query: 289 SAIQCLVHTPEFARYFRED-YRREINWQNPLGMV-------------------------- 321
           SA+QCL +T     YF +D Y  EIN  NPLGM                           
Sbjct: 315 SALQCLSNTAPLTDYFLKDKYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDTHVAPRM 374

Query: 322 ---------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADE 360
                                ELLAFLLDGLHEDLNRVK KPY++ KDA+GRPD  VA E
Sbjct: 375 FKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKE 434

Query: 361 YWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVF 420
            W NH  RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL     R M + + 
Sbjct: 435 AWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEIFLV 494

Query: 421 TSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPL 478
            +D    P+ Y V VP  G   DL + L  +  +  +E + V ++ NH   +   +D+  
Sbjct: 495 PADPRCRPTQYRVVVPLMGAVSDLCEALSRLSGVA-AENMVVTDVYNHRFHKIFQMDE-- 551

Query: 479 ISLSTIKDDDHLAAYRVPKLV---KKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSS 535
             L+ I   D +  Y V        + V L +  R ++  P +  T+S    YG PL+ S
Sbjct: 552 -GLNHIMPRDDIFVYEVCSTSADGSECVTLPVYFRERKSRPSS--TSSGAVLYGQPLLVS 608

Query: 536 ISRDDVISSGKIQSTVQRMLSPFLKKESLMHADS--FDPSS------------------- 574
           +++  +      Q+  +R +S ++K+     + S   +P +                   
Sbjct: 609 VAKHKLTLESLYQAVCER-ISRYIKQPLPEESGSSPLEPGACNGSRGSCEGEDEEEMEHQ 667

Query: 575 -----MVTTVDPSGE-----AHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLS 624
                 ++  + SGE      H  ++    K      +  T       LV+        S
Sbjct: 668 EEGKEQLSETEDSGEDELGGDHEETTQKKVKGQPCPKRLFT-----FSLVNSYGTADINS 722

Query: 625 VEGD-KTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLY 683
           +  D K +++ S ST   + +DW  +    Y         E   +    +K +   ++L 
Sbjct: 723 LATDGKLLKLNSRST---LAIDWDSETRSLYYDEQESEAYEKHMSMLQPQKKKKTAVALR 779

Query: 684 TCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLE 743
            C+E F   E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + KL+
Sbjct: 780 DCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLD 839

Query: 744 TFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFD 803
           T V FP+   N++++V +  S+R  +Y+L A++NHYG MG GHYTA+ K     +WY FD
Sbjct: 840 TVVEFPVRALNMSEFVCDL-SARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFD 898

Query: 804 DSHISPINEDDVKSAAAYVLFYRR 827
           DS++S  +ED + + AAYVLFY+R
Sbjct: 899 DSNVSLASEDQIVTKAAYVLFYQR 922


>gi|189230348|ref|NP_001121498.1| ubiquitin specific peptidase 15 [Xenopus (Silurana) tropicalis]
 gi|183985939|gb|AAI66318.1| LOC100158604 protein [Xenopus (Silurana) tropicalis]
          Length = 955

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 311/940 (33%), Positives = 439/940 (46%), Gaps = 186/940 (19%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D   +       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDTDTQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY        +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYSVVESQQPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +   +IF +  E +  +W+ Y       +N  + T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDMIEKEMRTIFSIPDEKETRLWNKYMSNTFEPLNKPESTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E              Q N                      G W   +
Sbjct: 199 QDAGLYQGQMLVIE--------------QKNQ--------------------EGQWP--R 222

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
           G+  N  +     P+ A+ ++ +     S         GL GL NLGNTCFMNSAIQCL 
Sbjct: 223 GSMPNMKNSNYCLPSYAAYKNYE----YSEPGRHNEQPGLCGLSNLGNTCFMNSAIQCLS 278

Query: 296 HTPEFARYFRED-YRREINWQNPLGM---------------------------------- 320
           +TP    YF  D Y+ E+N  NPLGM                                  
Sbjct: 279 NTPPLTEYFLNDKYQDELNMDNPLGMRGEIAKSYAELIKQMWSGKYSYVTPRAFKTQVGR 338

Query: 321 -------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E W NHI 
Sbjct: 339 FAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHIK 398

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDSIIVD+  G +KSTLVCP C+K+SVTFDPF YL+LPL     R + V +   D  A 
Sbjct: 399 RNDSIIVDIFHGLFKSTLVCPECSKISVTFDPFCYLTLPLPMKKERALEVYLVRMDPLAK 458

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTIK 485
           P  Y V VPK G   DL   L ++  +   E++ V +I NH   R   +D+   +LS+I 
Sbjct: 459 PMQYKVIVPKIGNIMDLCTALSSLSGIA-PEKMVVTDIYNHRFHRIFAMDE---NLSSIM 514

Query: 486 DDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKA---YGTPLVSSISRDDVI 542
           + D +  +    + +     Q+I  +  +E     + S       +G P + ++ R+  I
Sbjct: 515 ERDDIYVFET-SINRTEDTEQVIIPVYLREKFRHTSYSHHHGSTLFGQPFLITVPRN--I 571

Query: 543 SSGKIQSTVQRMLSPFLK---------------KESLMHADSFD-------PSSMVTTVD 580
           +  K+ + +   +  ++K               KE  ++ +  +       PS M T  +
Sbjct: 572 TEDKLYNLLLLRMCRYVKATNDTEEIDGSLHCNKEHTVNGNGPNGIHEEGSPSEMETD-E 630

Query: 581 PSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDK----TIRIPSS 636
           P  E+  +       E++ S  +V   N     +   + C   SV G K    T +  + 
Sbjct: 631 PDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTCKGQSVTGQKKRLFTFQFSNL 690

Query: 637 STSIVVYV------------------------DWSQKLLEKYNTHFLENLLEVFKNGPVT 672
            +S + Y+                        DW  KL +K+   F EN  E F+     
Sbjct: 691 GSSDITYIKDDTKYIRFDERQLRLDERSYLALDWDPKLKKKF---FDENAAEDFEKHESV 747

Query: 673 -----KKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVI 727
                KKA    + L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VLV+
Sbjct: 748 DFTPQKKAF---MKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVV 804

Query: 728 HLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHY 787
           HLKRFSYSR M+ KL+T V+FPI D +++ ++ N N+     Y L A++NHYGGMG GHY
Sbjct: 805 HLKRFSYSRYMRDKLDTLVDFPISDLDMSTFLINPNAG-PCCYNLIAVSNHYGGMGGGHY 863

Query: 788 TAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           TA  K  D+ +WY FDDS +S  +E+ + S AAYVLFY+R
Sbjct: 864 TAFAKNKDDGKWYYFDDSSVSTASEEQIVSKAAYVLFYQR 903


>gi|417405449|gb|JAA49435.1| Putative ubiquitin carboxyl-terminal hydrolase 4 [Desmodus
           rotundus]
          Length = 963

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 306/926 (33%), Positives = 450/926 (48%), Gaps = 144/926 (15%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 41  WFKQWKKYVGFD----SWDMYNVGEH--------NLFPGPIDNSGLFSDPESQT------ 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 83  LKEHLIDELDYVLVPAEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 142

Query: 118 LVMPRGECSTI---RISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDR 173
                G+ + +     SK +TI  + ++   +F +  E +  +W+ Y +  +  ++ +D 
Sbjct: 143 C--ENGDPTNMLSCHFSKADTIATIEKKMRKLFNIPAERETRLWNKYMNNSYEQLSKLDN 200

Query: 174 TLDDANIQMDQDILVEVLDNVNGTNCKSSIQDN-------GFAEKKASSVLVEPSKSSLS 226
           T+ DA +   Q +++E   N +GT  + ++Q          F      S     S S+  
Sbjct: 201 TVQDAGLYQGQVLVIEP-QNEDGTWPRQTLQSKSSTVPSRNFTTSPKPSASPYSSASASP 259

Query: 227 IAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCF 286
           IA G   S  TS  HSS +S   +  SA  +     SS      A  G+ GL NLGNTCF
Sbjct: 260 IANG--DSTNTSGMHSSGVSRGGSGFSASYNCQEPPSSH-----AQPGVCGLGNLGNTCF 312

Query: 287 MNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------------------------ 321
           MNSA+QCL +T     YF R++Y  EIN  NPLGM                         
Sbjct: 313 MNSALQCLSNTAPLTDYFLRDEYEAEINRDNPLGMKGEIAETYAELIKQMWSGRDAYVAP 372

Query: 322 -----------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVA 358
                                  ELLAFLLDGLHEDLNRVK KPY++ KDA+GRPD  VA
Sbjct: 373 RMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVA 432

Query: 359 DEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVT 418
            E W NH  RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL     R M V 
Sbjct: 433 KEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKRDRVMEVF 492

Query: 419 VFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDD 476
           +  +D    P+ Y VTVP  G   DL + L  +  +  +E + V ++ NH   +   +D+
Sbjct: 493 LVPADPHHRPTQYRVTVPLMGAVSDLCEALSRLSGVA-AENMVVTDVYNHRFHKIFQMDE 551

Query: 477 PLISLSTIKDDDHLAAYRVPK--------LVKKAVFLQLIHRLQEQEPGAAQTTSQWKAY 528
               L+ I   D +  Y V          L+    F +   R      GA         Y
Sbjct: 552 ---GLNHIMPRDDIFVYEVCSASEDGSECLLLSVYFRERRSRPSSTSSGAV-------LY 601

Query: 529 GTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTT---------- 578
           G PL+ S+ +  +      Q+  +R +S ++K+       S    S   +          
Sbjct: 602 GQPLLMSVPKHTLTLESLYQAVCER-ISRYIKQPLPAECGSSPSGSGACSRSRGGCEGED 660

Query: 579 ------VDPSGEAHSNSSSNIAKEDAS----SSKAVTLPNLPLQLVDESNV----CFDL- 623
                 +D   E  S +  +   E  S    +++ +     P QL   + V      D+ 
Sbjct: 661 EEEMEHLDEGKEQLSETGGSWEDEPGSGPGETTQTIKGQPCPKQLFSLNAVNSYGTADIN 720

Query: 624 SVEGDKTIRIPSSSTSIVVYVDWSQKLL--EKYNTHFLENLLEVFKNGPVTKKARTEPLS 681
           ++E D+ +   +S +++ +  D   + L  ++  +   E  + V +     +K +   ++
Sbjct: 721 ALETDEELLKLNSGSTLAMNWDSETRSLYYDEQESEAFEKHVSVLQ----PQKKKKTAMA 776

Query: 682 LYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHK 741
           L  C+E F   E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSYSR  + K
Sbjct: 777 LRDCIELFTTMETLGEYDPWYCPNCKKHQQATKKFDLWALPKILVVHLKRFSYSRYWRDK 836

Query: 742 LETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYN 801
           L+T V FPI   N++++V +  S+R  +Y+L A++NHYG MG GHYTA+ K     +WY 
Sbjct: 837 LDTVVEFPIRGLNMSEFVCDP-SARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNRKWYY 895

Query: 802 FDDSHISPINEDDVKSAAAYVLFYRR 827
           FDDS++S  +ED + + AAYVLFY+R
Sbjct: 896 FDDSNVSLASEDQIVTKAAYVLFYQR 921


>gi|432092405|gb|ELK25020.1| Ubiquitin carboxyl-terminal hydrolase 4 [Myotis davidii]
          Length = 901

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 295/882 (33%), Positives = 427/882 (48%), Gaps = 117/882 (13%)

Query: 38  PSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLAR 94
           P  IDNS L +D  ++       + + L++  DY+L+P E WN+L +WYG   G   + R
Sbjct: 3   PGPIDNSGLFSDPESQT------LKEHLIDELDYVLVPAEAWNKLINWYGCVEGQQPIVR 56

Query: 95  KVISSGLSQTELAVEVYPLRLQLLVMPRGECSTIR---ISKKETIGELHRRACSIFYLNL 151
           KV+  GL      VEVY L L+L      + + +R    SK +TI  + +    +F +  
Sbjct: 57  KVVEYGLFVKHCKVEVYLLELKLC--ENSDPTNMRSCHFSKADTIATIEKEMRKLFNIPA 114

Query: 152 E-QICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNG--- 207
           E +  +W+ Y    +  ++ +D T+ DA +   Q +++E   N +GT  + ++Q      
Sbjct: 115 ERETRLWNKYMSNTYEQLSKLDNTVQDAGLYQGQVLVIEP-QNEDGTWPRQTLQSKSSTA 173

Query: 208 ----FAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGS 263
               F     SS     S S+  IA G   S  TS  HSS +    +  SA  +     S
Sbjct: 174 PSRNFTTSPKSSASPYSSVSASPIANG--DSTNTSGMHSSGVGRGGSGFSASYNCQEPPS 231

Query: 264 SGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV- 321
           S V       GL GL NLGNTCFMNSA+QCL +T     YF R++Y  EIN  NPLGM  
Sbjct: 232 SHVQP-----GLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLRDEYEAEINRDNPLGMKG 286

Query: 322 ----------------------------------------------ELLAFLLDGLHEDL 335
                                                         ELLAFLLDGLHEDL
Sbjct: 287 EIAEAYAELIKQMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDL 346

Query: 336 NRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSV 395
           NRVK KPY++ +DA+GRPD  VA E W NH  RNDS+IVD   G +KSTLVCP C KVSV
Sbjct: 347 NRVKKKPYLELQDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSV 406

Query: 396 TFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLK 455
           TFDPF YL+LPL     R M V +  +D    P  Y VTVP  G   DL + L  +  + 
Sbjct: 407 TFDPFCYLTLPLPLKKDRVMEVFLVPADPRCRPVQYRVTVPLMGAVSDLCEALSQLSGVA 466

Query: 456 QSEELKVAEIQNHSIQRF--LDDPLISLSTIKDDDHLAAYRV-PKLVKKAVFLQLIHRLQ 512
            +E + V ++ NH   +   +D+    L+ I   D +  Y V     + +  + L    +
Sbjct: 467 -AENMVVTDVYNHRFHKIFQMDE---GLNHIMPRDDIFVYEVCSTCAEGSECVTLPVYFR 522

Query: 513 EQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKE--SLMHADSF 570
           E++   +  +S    YG PL+ S+ +  +      Q+  +R +S ++K+     + +   
Sbjct: 523 ERKSRPSSPSSGAVLYGQPLLVSVPKHTLTLESLYQAVCER-ISRYIKQPLPEEVGSSPL 581

Query: 571 DPSSMVTT----------------------VDPSGEAHSNSSSNIAKEDASSSKAVTLPN 608
           +P +   +                       +P G       S+  +     S     P 
Sbjct: 582 EPGACNGSRGSCEGEDEEEMEHLEEGKEQLSEPEGSWEDELGSDRGETTQRKSPGRPCPQ 641

Query: 609 --LPLQLVDESNVCFDLSVEGD-KTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEV 665
                 LV+        S+  D K +++ S ST   + +DW  +    Y         E 
Sbjct: 642 RLFTFSLVNAYGTADINSLTSDGKLLKLSSRST---LAIDWDTETRSLYYDEQESEAFEK 698

Query: 666 FKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVL 725
             +    +K +   ++L  C+E F   E L   D WYCP CK  +QA+KK DLW LP++L
Sbjct: 699 HVSMLQPQKKKKTAMALRDCIELFTTMETLGEHDPWYCPNCKRHQQATKKFDLWSLPKIL 758

Query: 726 VIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSG 785
           V+HLKRFSYSR  + KL+T V FP+   N++++V +  S+R  +Y+L A++NHYG MG G
Sbjct: 759 VVHLKRFSYSRYWRDKLDTVVEFPVRGLNMSEFVCDP-SARPYVYDLIAVSNHYGAMGVG 817

Query: 786 HYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           HYTAH K     +WY FDDS++S  +ED + + AAYVLFY+R
Sbjct: 818 HYTAHAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQR 859


>gi|57524946|ref|NP_001006134.1| ubiquitin carboxyl-terminal hydrolase 4 [Gallus gallus]
 gi|53131277|emb|CAG31805.1| hypothetical protein RCJMB04_11i7 [Gallus gallus]
          Length = 964

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 304/919 (33%), Positives = 439/919 (47%), Gaps = 133/919 (14%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W+  W  YV  D+ + +G G   L             P  IDNS L+ D      G    
Sbjct: 65  WFSLWKRYVGYDRWDVSGVGDPNL------------FPGPIDNSCLLGD------GETQS 106

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L+   DY+L+P   W +L SWYG   G   + RKV+  GL      VEVYPL L+L
Sbjct: 107 LKEHLIAQLDYVLVPSSAWQKLVSWYGCIEGQQPIVRKVMEFGLYAKHCEVEVYPLELKL 166

Query: 118 L--VMPRGECSTIRISKKETIGELHRRACSIFYLNLEQ-ICIWDYYGHRKHALMNDMDRT 174
                P    S    S+++++  L +    +F +  E+ + +W  +    +  ++++  T
Sbjct: 167 CESSSPSNVISCC-FSRRDSVATLVKEVRKLFKIPAEKDVRLWSSHFDGSYEQLSELGVT 225

Query: 175 LDDANIQMDQDILVEVLDNVNGT--------NCKSSIQDNGFAEKKASSVLVEPSKSSLS 226
           L+DANI     +L+EV  N +GT           ++   N     K S+     + ++  
Sbjct: 226 LEDANIYHGALVLIEV-KNEDGTWPQHPFLAKSSTATSRNFTTSSKPSASSYSTASATSV 284

Query: 227 IAGG---WSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGN 283
           I  G    S    +S         + N  S+RDS +           +  GL GL NLGN
Sbjct: 285 ITNGDSSNSYGLSSSSLGRGGSGFACNSYSSRDSASL----------SQPGLCGLSNLGN 334

Query: 284 TCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM---------------------- 320
           TCFMNSA+QCL +TP    YF ED Y  EIN  NPLGM                      
Sbjct: 335 TCFMNSALQCLSNTPPLTDYFLEDKYEAEINHSNPLGMRGEIAEAYAELIKQIWSGRQSH 394

Query: 321 -------------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDE 355
                                     ELLAFLLDGLHEDLNRVK KPY++ KDA+GRPD 
Sbjct: 395 VAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDS 454

Query: 356 EVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTM 415
            VA E W NH  RNDSIIVD+  G +KSTLVCP C+KVSVTFDPF YL+LPL     R +
Sbjct: 455 VVAKEAWENHRLRNDSIIVDIFHGLFKSTLVCPKCSKVSVTFDPFCYLTLPLPLKRDRLL 514

Query: 416 TVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FL 474
            VT+  +D    P  Y V VP  G   DL + L  +  +  +E + V ++ NH   + F 
Sbjct: 515 EVTLVYADPQRRPVQYRVVVPMMGAISDLCESLSKLSGVP-AENMVVTDVYNHRFHKIFQ 573

Query: 475 DDPLISLSTIKDDDHLAAYRVPKLVKKAV-FLQLIHRLQEQEPGAAQTTSQWKAYGTPLV 533
            D   +L+ I   D +  Y V K  +    ++      +E+    + +T+    +G PL+
Sbjct: 574 ADE--ALNHIMPKDDIFVYEVCKPSEDGSEYITFSVYFREKAARQSSSTAGTVLFGQPLL 631

Query: 534 SSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDP-------SSMVTTVDPSGEAH 586
            S+ +   ++   + S V   +S ++K        +  P       SS V   D     H
Sbjct: 632 ISVPKHK-LTVDHLYSVVLERISRYVKLPVAEEYSAPCPDRGACNGSSSVAEGDIEEMEH 690

Query: 587 SNSSS----NIAKEDASSSKAVTL--PNLPLQLVDESNVCFDL----------SVEGDKT 630
            +        +A+ D   S+      P   LQ   + +  F L          S+   K 
Sbjct: 691 QDDGQEGREKLAEVDPCPSEGCMQIEPTRDLQPCKKQHFTFSLVNLYGTSEINSIVEGKL 750

Query: 631 IRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF-KNGPVTKKARTEP-LSLYTCLEA 688
           +++ + ST  + +   +++LL      F E   + F K+  V +  + +  ++L  C+E 
Sbjct: 751 LKLSAFSTLAIDWDSGTRRLL------FDEQEAQAFEKHASVLQPQKMKAVVALKDCIEL 804

Query: 689 FLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNF 748
           F   E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSYSR  + KL+T V F
Sbjct: 805 FTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYSRYWRDKLDTVVEF 864

Query: 749 PIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHIS 808
           PI   N++++V +       +Y+L A++NHYG MG GHYTA+ K      WY FDDS +S
Sbjct: 865 PIRGLNMSEFVCDPRGG-SYVYDLIAVSNHYGAMGVGHYTAYAKNKVNGEWYYFDDSSVS 923

Query: 809 PINEDDVKSAAAYVLFYRR 827
             +ED + + AAYVLFY+R
Sbjct: 924 LASEDQIVTKAAYVLFYQR 942


>gi|327272916|ref|XP_003221230.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform 2
           [Anolis carolinensis]
          Length = 953

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 304/932 (32%), Positives = 433/932 (46%), Gaps = 170/932 (18%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D      G    
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKD------GDCQS 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY        +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLLESQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E               ++G   +  S+  V+ S   L     ++A K
Sbjct: 199 QDAGLYQGQVLVIE------------QRNEDGTWPRGPSAPNVKNSNYCLP---SYTAYK 243

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
               +     +  P                        GL GL NLGNTCFMNSAIQCL 
Sbjct: 244 NYDYSEPGRHNEQP------------------------GLCGLSNLGNTCFMNSAIQCLS 279

Query: 296 HTPEFARYFRED-YRREINWQNPLGM---------------------------------- 320
           +TP    YF  D Y+ E+N+ NPLGM                                  
Sbjct: 280 NTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKYSYVTPRAFKTQVGR 339

Query: 321 -------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E W NH+ 
Sbjct: 340 FAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLK 399

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     R++ V +   D  A 
Sbjct: 400 RNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERSLEVYLVRMDPLAK 459

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTIK 485
           P  Y V VPK G  +DL   L  +  +  ++++ V +I NH   R   +D+   +LS+I 
Sbjct: 460 PMQYKVVVPKIGNIQDLCTALSTLSGVA-ADKMIVTDIYNHRFHRIFAMDE---NLSSIM 515

Query: 486 DDDHLAAYRVP---KLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVI 542
           + D +  + +        + V + +  R + +  G +  +     +G P + ++ R++  
Sbjct: 516 ERDDIYVFEIGINRTEDTEQVVIPVCLREKFRHSGYSHHSGS-THFGQPFLIAVPRNN-- 572

Query: 543 SSGKIQSTVQRMLSPFLKKESL--------------------------------MHADSF 570
           +  K+ + +   +  ++K  S                                 M  D  
Sbjct: 573 TEDKLYNLLLLRMCRYVKTSSETEDTEASLQCCKDNGINGNGPNGIHEEGSPSEMETDEQ 632

Query: 571 DPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVE--GD 628
           D  S      PS   +S S  ++  ++ S +   T  +   QL+      F       G+
Sbjct: 633 DDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEDSCKDQLIGHKKRLFTFQFNSLGN 692

Query: 629 KTIRIPSSSTSIVVYVDWSQKLLEK----------YNTHFL-ENLLEVF-KNGPVTKKAR 676
             I      T  + + D   +L E+          Y   F  EN  E F K+  V  +  
Sbjct: 693 TDINYVKDDTRHIRFDDRQLRLDERSFLALDWDPEYKKRFFDENAAEDFEKHESVEYRPP 752

Query: 677 TEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYS 735
            +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VLV+HLKRFSYS
Sbjct: 753 KKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYS 812

Query: 736 RSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLD 795
           R M+ KL+T V FPI D ++++++ N N+   + Y L A++NHYGGMG GHYTA  K  D
Sbjct: 813 RYMRDKLDTLVEFPITDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGGHYTAFAKNKD 871

Query: 796 ENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           + +WY FDDS +S  +E+ + S AAYVLFY+R
Sbjct: 872 DGKWYYFDDSSVSTASEEQIVSKAAYVLFYQR 903


>gi|301770377|ref|XP_002920614.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4-like [Ailuropoda
           melanoleuca]
          Length = 1000

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 301/920 (32%), Positives = 439/920 (47%), Gaps = 131/920 (14%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 77  WFKQWKKYVGFD----SWDMYNVGEH--------NLFPGPIDNSGLFSDPESQ------T 118

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 119 LKEHLIDELDYVLVPAEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 178

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T
Sbjct: 179 CENSDPTNVLS-CHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNT 237

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDN-------GFAEKKASSVLVEPSKSSLSI 227
           + DA +   Q +++E   N +GT  + ++Q          F     SS     S S+  I
Sbjct: 238 VQDAGLYQGQVLVIEP-QNEDGTWPRQTLQSKSSTAPSRNFPTSPTSSASPFSSVSASPI 296

Query: 228 AGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFM 287
           A G   S  TS  HSS +S   +  SA  +     SS +       GL GL NLGNTCFM
Sbjct: 297 ANG--DSTNTSGMHSSGVSRGGSGFSASYNCQESPSSHIQP-----GLCGLGNLGNTCFM 349

Query: 288 NSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------------------------- 321
           NSA+QCL +T     YF +++Y  EIN  NPLGM                          
Sbjct: 350 NSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDSHVAPR 409

Query: 322 ----------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVAD 359
                                 ELLAFLLDGLHEDLNRVK KPY++ KDA+GRPD  VA 
Sbjct: 410 MFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAK 469

Query: 360 EYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTV 419
           E W NH  RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL     R M V +
Sbjct: 470 EAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEVFL 529

Query: 420 FTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDP 477
             +D    P+ Y V VP  G   DL + L  +  +  +E + V ++ NH   +   +D+ 
Sbjct: 530 VPADPRCRPTQYRVVVPLMGAVSDLCEALSRLSGVA-AENMVVTDVYNHRFHKIFQMDE- 587

Query: 478 LISLSTIKDDDHLAAYRVPKLV---KKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVS 534
              L+ I   D +  Y V        + V L +  R ++  P  + T+S    YG PL+ 
Sbjct: 588 --GLNHIMPRDDIFVYEVCGTSADGSECVTLPVYFRERKSRP--SNTSSGAVLYGQPLLV 643

Query: 535 SISRDDVISSGKIQSTVQRMLSPFLKK--------------------------ESLMHAD 568
           S+++  +      Q+  +R +S ++K+                          +      
Sbjct: 644 SVAKHKLTLESLYQAVCER-ISRYIKQPLPEESGSSSSEPGACNGSRGNYEGEDEEEMEH 702

Query: 569 SFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGD 628
             +   +++  + SGE           +     +          LV+        S+  D
Sbjct: 703 QEEGRELLSETEGSGEDEVGGDHGETTQKKVKGQPCPKRLFTFSLVNSYGTADINSLATD 762

Query: 629 -KTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLE 687
            K +++ S ST   + +DW  +    Y         E   +    +K +   ++L  C+E
Sbjct: 763 GKLLKLNSRST---LAIDWDSETRSLYYDEQESEAYEKHVSMLQPQKKKKTAVALRDCIE 819

Query: 688 AFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVN 747
            F   E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + KL+T V 
Sbjct: 820 LFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVE 879

Query: 748 FPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHI 807
           FP+   N++++V +  S+R  +Y+L A++NHYG MG GHYTA+ K     +WY FDDS +
Sbjct: 880 FPVRALNMSEFVCDL-SARPYMYDLIAVSNHYGAMGVGHYTAYAKNKVNGKWYYFDDSSV 938

Query: 808 SPINEDDVKSAAAYVLFYRR 827
           S  +ED + + AAYVLFY+R
Sbjct: 939 SLASEDQIVTKAAYVLFYQR 958


>gi|281338350|gb|EFB13934.1| hypothetical protein PANDA_009352 [Ailuropoda melanoleuca]
          Length = 962

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 300/920 (32%), Positives = 440/920 (47%), Gaps = 131/920 (14%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 39  WFKQWKKYVGFD----SWDMYNVGEH--------NLFPGPIDNSGLFSDPESQ------T 80

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 81  LKEHLIDELDYVLVPAEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 140

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T
Sbjct: 141 CENSDPTNVLS-CHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNT 199

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDN-------GFAEKKASSVLVEPSKSSLSI 227
           + DA +   Q +++E   N +GT  + ++Q          F     SS     S S+  I
Sbjct: 200 VQDAGLYQGQVLVIEP-QNEDGTWPRQTLQSKSSTAPSRNFPTSPTSSASPFSSVSASPI 258

Query: 228 AGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFM 287
           A G   S  TS  HSS +S   +  SA  +     SS +       GL GL NLGNTCFM
Sbjct: 259 ANG--DSTNTSGMHSSGVSRGGSGFSASYNCQESPSSHIQP-----GLCGLGNLGNTCFM 311

Query: 288 NSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------------------------- 321
           NSA+QCL +T     YF +++Y  EIN  NPLGM                          
Sbjct: 312 NSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDSHVAPR 371

Query: 322 ----------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVAD 359
                                 ELLAFLLDGLHEDLNRVK KPY++ KDA+GRPD  VA 
Sbjct: 372 MFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAK 431

Query: 360 EYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTV 419
           E W NH  RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL     R M V +
Sbjct: 432 EAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEVFL 491

Query: 420 FTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDP 477
             +D    P+ Y V VP  G   DL + L  +  +  +E ++ +++ NH   +   +D+ 
Sbjct: 492 VPADPRCRPTQYRVVVPLMGAVSDLCEALSRLSGVA-AENVRQSDVYNHRFHKIFQMDE- 549

Query: 478 LISLSTIKDDDHLAAYRVPKLV---KKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVS 534
              L+ I   D +  Y V        + V L +  R ++  P  + T+S    YG PL+ 
Sbjct: 550 --GLNHIMPRDDIFVYEVCGTSADGSECVTLPVYFRERKSRP--SNTSSGAVLYGQPLLV 605

Query: 535 SISRDDVISSGKIQSTVQRMLSPFLKK--------------------------ESLMHAD 568
           S+++  +      Q+  +R +S ++K+                          +      
Sbjct: 606 SVAKHKLTLESLYQAVCER-ISRYIKQPLPEESGSSSSEPGACNGSRGNYEGEDEEEMEH 664

Query: 569 SFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGD 628
             +   +++  + SGE           +     +          LV+        S+  D
Sbjct: 665 QEEGRELLSETEGSGEDEVGGDHGETTQKKVKGQPCPKRLFTFSLVNSYGTADINSLATD 724

Query: 629 -KTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLE 687
            K +++ S ST   + +DW  +    Y         E   +    +K +   ++L  C+E
Sbjct: 725 GKLLKLNSRST---LAIDWDSETRSLYYDEQESEAYEKHVSMLQPQKKKKTAVALRDCIE 781

Query: 688 AFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVN 747
            F   E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + KL+T V 
Sbjct: 782 LFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVE 841

Query: 748 FPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHI 807
           FP+   N++++V +  S+R  +Y+L A++NHYG MG GHYTA+ K     +WY FDDS +
Sbjct: 842 FPVRALNMSEFVCDL-SARPYMYDLIAVSNHYGAMGVGHYTAYAKNKVNGKWYYFDDSSV 900

Query: 808 SPINEDDVKSAAAYVLFYRR 827
           S  +ED + + AAYVLFY+R
Sbjct: 901 SLASEDQIVTKAAYVLFYQR 920


>gi|326927732|ref|XP_003210044.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4-like [Meleagris
           gallopavo]
          Length = 917

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 298/877 (33%), Positives = 435/877 (49%), Gaps = 111/877 (12%)

Query: 38  PSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLAR 94
           P  IDN+ L+ND      G    + + L+   DY+L+P   W +L SWYG   G   + R
Sbjct: 43  PGPIDNACLLND------GESQSLKEHLIAQLDYVLVPSSAWQKLVSWYGCIEGQQPIVR 96

Query: 95  KVISSGLSQTELAVEVYPLRLQLL--VMPRGECSTIRISKKETIGELHRRACSIFYLNLE 152
           KV+  GL      VEVYPL L+L     P    S    S+++++  L +    +F +  E
Sbjct: 97  KVMEFGLYAKHCEVEVYPLELKLCESSSPSNVISCC-FSRRDSVATLVKEIRKLFKIPAE 155

Query: 153 Q-ICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSI--QDNGFA 209
           + + +W  +    +  ++++  TL+DANI   + +L+EV  N +G   +     + +  +
Sbjct: 156 KDVRLWSSHFDGSYEQLSELGVTLEDANIYHGELVLIEV-KNEDGMWPQHPFLAKSSTAS 214

Query: 210 EKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTR 269
            +  ++     + S    +     + G S N     S+S     +  + N+  SSG +  
Sbjct: 215 SRNFTTSSKPSASSYSPASATSVITNGDSSNSYGLSSSSLGRGGSGFACNSY-SSGDSAS 273

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM-------- 320
            +  GL GL NLGNTCFMNSA+QCL +TP    YF ED Y  EIN  NPLGM        
Sbjct: 274 LSQPGLCGLSNLGNTCFMNSALQCLSNTPPLTDYFLEDKYEAEINHSNPLGMRGEIAEAY 333

Query: 321 ---------------------------------------VELLAFLLDGLHEDLNRVKHK 341
                                                   ELLAFLLDGLHEDLNRVK K
Sbjct: 334 AELIKQIWSGRQSHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKK 393

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
           PY++ KDA+GRPD  VA E W NH  RNDSIIVD+  G +KSTLVCP C+KVSVTFDPF 
Sbjct: 394 PYLELKDANGRPDSVVAKEAWENHRLRNDSIIVDIFHGLFKSTLVCPKCSKVSVTFDPFC 453

Query: 402 YLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELK 461
           YL+LPL     R + VT+  +D    P  Y V VP  G   DL + L  +  +  +E + 
Sbjct: 454 YLTLPLPLKRDRLLEVTLVPADPQRRPVQYRVVVPMMGAISDLCESLSKLSGVP-AENMV 512

Query: 462 VAEIQNHSIQR-FLDDPLISLSTIKDDDHLAAYRVPKLVKKAV-FLQLIHRLQEQEPGAA 519
           VA++ NH   + F  D    L+ I   D +  Y V K  +    ++      +E+    +
Sbjct: 513 VADVYNHRFHKIFQADE--GLNHIMPKDDIFVYEVCKPSEDGSEYITFSVYFREKAARQS 570

Query: 520 QTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDP------- 572
            +TS    +G PL+ S+ +   ++   +   V   +S ++K        +  P       
Sbjct: 571 SSTSGTILFGQPLLISVPKHK-LTVDHLYGVVLERISRYVKLPVAEEYSTPCPGRGACNG 629

Query: 573 SSMVTTVDPSGEAHSNSSS----NIAKEDASSSKAVTL--PNLPLQLVDESNVCFDLS-- 624
           SS V   D     H +        +A+ D   S+      P   +Q   + +  F L   
Sbjct: 630 SSSVAEGDIEEMEHQDDGQECREKLAEVDPCHSEGCMQIEPTRDVQPCKKQHFTFSLVNL 689

Query: 625 ---------VEGDKTIRIPSSSTSIVVYVDW---SQKLLEKYNTHFLENLLEVF-KNGPV 671
                    VEG K +++ + ST   + +DW   +++LL      F E   + F K+  V
Sbjct: 690 YGTSEINSIVEG-KLLKLNAFST---LAIDWDSDTRRLL------FDEQEAQAFEKHASV 739

Query: 672 TKKARTEP-LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLK 730
            +  + +  ++L  C+E F   E L   D WYCP CK+ +QA+KK DLW LP++LV+HLK
Sbjct: 740 LQPQKMKAVVALKDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLK 799

Query: 731 RFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAH 790
           RFSYSR  + KL+T V FPI   N++++V +   S   +Y+L A++NHYG MG GHYTA+
Sbjct: 800 RFSYSRYWRDKLDTVVEFPIRGLNMSEFVCDPRGSSY-VYDLIAVSNHYGAMGVGHYTAY 858

Query: 791 IKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            K     +WY FDDS +S  +ED + + AAYVLFY+R
Sbjct: 859 AKNKVNGKWYYFDDSSVSLASEDQIVTKAAYVLFYQR 895


>gi|154152175|ref|NP_001093789.1| ubiquitin carboxyl-terminal hydrolase 4 [Bos taurus]
 gi|158513811|sp|A6QR55.1|UBP4_BOVIN RecName: Full=Ubiquitin carboxyl-terminal hydrolase 4; AltName:
           Full=Deubiquitinating enzyme 4; AltName: Full=Ubiquitin
           thioesterase 4; AltName:
           Full=Ubiquitin-specific-processing protease 4
 gi|151554732|gb|AAI50121.1| USP4 protein [Bos taurus]
 gi|296474786|tpg|DAA16901.1| TPA: ubiquitin specific protease 4 [Bos taurus]
          Length = 963

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 296/920 (32%), Positives = 435/920 (47%), Gaps = 131/920 (14%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 41  WFKQWKKYVGFD----SWDMYNVGEH--------NLYPGPIDNSGLFSDPESQ------T 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 83  LKEHLIDELDYVLVPAEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 142

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T
Sbjct: 143 CENSDPTNVLS-CHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNT 201

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDN-------GFAEKKASSVLVEPSKSSLSI 227
           + DA +   Q +++E   N +GT  + + Q          F     SS     S S+  I
Sbjct: 202 VQDAGLYQGQVLVIEP-QNEDGTWPRQTQQSKSSTAPSRNFTTSPKSSASPYSSVSASPI 260

Query: 228 AGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFM 287
           A G S +     +       S   AS    ++ L            GL GL NLGNTCFM
Sbjct: 261 ANGDSTNTSGMHSSGVSRGGSGFSASYNCQESPLTH-------VQPGLCGLGNLGNTCFM 313

Query: 288 NSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------------------------- 321
           NSA+QCL +T     YF +++Y  EIN  NPLGM                          
Sbjct: 314 NSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPR 373

Query: 322 ----------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVAD 359
                                 ELLAFLLDGLHEDLNRVK KPY++ KDA+GRPD  VA 
Sbjct: 374 MFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAK 433

Query: 360 EYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTV 419
           E W NH  RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL     R M + +
Sbjct: 434 EAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEIFL 493

Query: 420 FTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDP 477
             +D    P+ Y V VP  G   DL + L  +  +  +E + V ++ NH   +   +D+ 
Sbjct: 494 VPADPRCRPTQYRVVVPLMGAVSDLCEALSKLSGIA-AENMVVTDVYNHRFHKIFQMDE- 551

Query: 478 LISLSTIKDDDHLAAYRVPKLV---KKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVS 534
              L+ I   D +  Y V        + V L +  R ++  P +  T +    YG PL+ 
Sbjct: 552 --GLNHIMPRDDIFVYEVCSTSPDGSECVTLPVYFRERKSRPSSTSTGA--VLYGQPLLV 607

Query: 535 SISRDDVISSGKIQSTVQRMLSPFLKK-------ESLMHADSFDPS-------------- 573
           S+ +  +      Q+  +R +S ++K+        S +   + + S              
Sbjct: 608 SVPKHKLTLESLYQAVCER-ISRYIKQPLPDESGSSPLELGACNGSRSGCAGEDEEEMEH 666

Query: 574 -----SMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGD 628
                  ++  + SG+    S    A +  +  +          LV+        S+  D
Sbjct: 667 QEEGREQLSETEGSGDDEPGSDHGEATQKKNKGRPCPRRLFTFSLVNSYGTADINSLATD 726

Query: 629 -KTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLE 687
            K +++ S ST   + +DW  +    Y         E   +    +K +   ++L  C+E
Sbjct: 727 GKLLKLNSRST---LAIDWDSETRSCYYNEQESETYEKHVSMLQPQKKKKTAVALRDCIE 783

Query: 688 AFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVN 747
            F   E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + KL+T V 
Sbjct: 784 LFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVE 843

Query: 748 FPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHI 807
           FP+   N++++V +  S+R  +Y+L A++NHYG MG GHYTA+ K     +WY FDDS++
Sbjct: 844 FPVRGLNMSEFVCDP-SARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNV 902

Query: 808 SPINEDDVKSAAAYVLFYRR 827
           S   ED + + AAYVLFY+R
Sbjct: 903 SLACEDQIVTKAAYVLFYQR 922


>gi|410036953|ref|XP_003950154.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Pan
           troglodytes]
          Length = 907

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 303/886 (34%), Positives = 430/886 (48%), Gaps = 126/886 (14%)

Query: 38  PSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLAR 94
           P  IDNS L +D  ++       + + L++  DY+L+P E WN+L +WYG   G   + R
Sbjct: 11  PGPIDNSGLFSDPESQ------TLKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVR 64

Query: 95  KVISSGLSQTELAVEVYPLRLQLLVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE 152
           KV+  GL      VEVY L L+L     P    S    SK +TI  + +    +F +  E
Sbjct: 65  KVVEHGLFVKHCKVEVYLLELKLCENSDPTNVLS-CHFSKADTIATIEKEMRKLFNIPAE 123

Query: 153 -QICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDN----- 206
            +  +W+ Y    +  ++ +D T+ DA +   Q +++E   N +GT  + ++Q       
Sbjct: 124 RETRLWNKYMSNTYEQLSKLDNTVQDAGLYQGQVLVIEP-QNEDGTWPRQTLQSKSSTAP 182

Query: 207 --GFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSS 264
              F     SS     S S+  IA G S S  T   HSS +S   +  SA  +     SS
Sbjct: 183 SRNFTTSPKSSASPYSSVSASLIANGDSTS--TCGMHSSGVSRGGSGFSASYNCQEPPSS 240

Query: 265 GVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV-- 321
            +       GL GL NLGNTCFMNSA+QCL +T     YF +++Y  EIN  NPLGM   
Sbjct: 241 HIQP-----GLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGE 295

Query: 322 ---------------------------------------------ELLAFLLDGLHEDLN 336
                                                        ELLAFLLDGLHEDLN
Sbjct: 296 IAEAYAELIKQMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLN 355

Query: 337 RVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVT 396
           RVK KPY++ KDA+GRPD  VA E W NH  RNDS+IVD   G +KSTLVCP C KVSVT
Sbjct: 356 RVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVT 415

Query: 397 FDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQ 456
           FDPF YL+LPL     R M V +  +D    P+ Y VTVP  G   DL + L  +  +  
Sbjct: 416 FDPFCYLTLPLPLKKDRVMEVFLVPADPHCRPTQYRVTVPLMGAVSDLCEALSRLSGIA- 474

Query: 457 SEELKVAEIQNHSIQRF--LDDPLISLSTIKDDDHLAAYRVPKL-VKKAVFLQLIHRLQE 513
           +E + VA++ NH   +   +D+    L+ I   D +  Y V    V  +  + L    +E
Sbjct: 475 AENMVVADVYNHRFHKIFQMDE---GLNHIMPRDDIFVYEVCSTSVDGSECVTLPVYFRE 531

Query: 514 QEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPS 573
           ++   + T+S    YG PL+ S+ +  +      Q+   R +S ++K+      D F  S
Sbjct: 532 RKSRPSSTSSASALYGQPLLLSVPKHKLTLESLYQAVCDR-ISRYVKQPL---PDEFGSS 587

Query: 574 SM-----------------------------VTTVDPSGEAHSNSSSNIAKEDASSSKAV 604
            +                             ++  + SGE   +   N   E     K  
Sbjct: 588 PLEPGACNGSRNSCEGEDEEEMEHQEEGKEQLSETEGSGE---DEPGNDPSETTQKIKGQ 644

Query: 605 TLPN--LPLQLVDESNVCFDLSVEGD-KTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLEN 661
             P       LV+        S+  D K +++ S ST   + +DW  +    Y       
Sbjct: 645 PCPKRLFTFSLVNSYGTADINSLAADGKLLKLNSRST---LAMDWDSETRRLYYDEQESE 701

Query: 662 LLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRL 721
             E   +    +K +   ++L  C+E F   E L   D WYCP CK+ +QA+KK DLW L
Sbjct: 702 AYEKHVSMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSL 761

Query: 722 PEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGG 781
           P++LV+HLKRFSY+R  + KL+T V FPI   N++++V N  S+R  +Y+L A++NHYG 
Sbjct: 762 PKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNL-SARPYVYDLIAVSNHYGA 820

Query: 782 MGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           MG GHYTA+ K     +WY FDDS++S  +ED + + AAYVLFY+R
Sbjct: 821 MGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQR 866


>gi|332215938|ref|XP_003257098.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 isoform 1
           [Nomascus leucogenys]
          Length = 963

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 311/925 (33%), Positives = 448/925 (48%), Gaps = 141/925 (15%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 41  WFKQWKKYVGFD----SWDMYNVGEH--------NLFPGPIDNSGLFSDPESQ------T 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 83  LKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 142

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T
Sbjct: 143 CENSDPTNVLS-CHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNT 201

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDN-------GFAEKKASSVLVEPSKSSLSI 227
           + DA +   Q +++E   N +GT  + ++Q          F     SS     S S+  I
Sbjct: 202 VQDAGLYQGQVLVIEP-QNEDGTWPRQTLQSKSSTAPSRNFTTSPKSSASPYSSVSASLI 260

Query: 228 AGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFM 287
           A G S S  T   HSS +S   +  SA  +     SS +       GL GL NLGNTCFM
Sbjct: 261 ANGDSTS--TCGMHSSGVSRGGSGFSASYNCQEPPSSHIQP-----GLCGLGNLGNTCFM 313

Query: 288 NSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------------------------- 321
           NSA+QCL +T     YF +++Y  EIN  NPLGM                          
Sbjct: 314 NSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPR 373

Query: 322 ----------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVAD 359
                                 ELLAFLLDGLHEDLNRVK KPY++ KDA GRPD  VA 
Sbjct: 374 MFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDASGRPDAVVAK 433

Query: 360 EYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTV 419
           E W NH  RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL     R M V +
Sbjct: 434 EAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEVFL 493

Query: 420 FTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDP 477
             +D    P+ Y VTVP  G   DL + L  +  +  +E + VA++ NH   +   +D+ 
Sbjct: 494 VPADPHCRPTQYRVTVPLMGAVSDLCEALSRLSGIA-AENMVVADVYNHRFHKIFQMDE- 551

Query: 478 LISLSTIKDDDHLAAYRVPKLV---KKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVS 534
              L+ I   D +  Y V        + V L +  R  E++   + T+S    YG PL+ 
Sbjct: 552 --GLNHIMPRDDIFVYEVCSTSMDGSECVMLPVYFR--ERKSRPSSTSSGSALYGQPLLL 607

Query: 535 SISRDDVISSGKIQSTVQRMLSPFLKKESLMHADS--FDPSS------------------ 574
           S+ +  +      Q+   R +S ++K+     + S   +P +                  
Sbjct: 608 SVPKHKLTLESLYQAVCDR-ISRYVKQPLPDESGSSPLEPGACNGSRNSCEGEDEEEMEH 666

Query: 575 ------MVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGD 628
                  ++  + SGE    +  +   +     +          LV+        S+  D
Sbjct: 667 QEEGKEQLSETEGSGEDEPGNDPSETTQKKIKGQPCPKRLFTFSLVNSYGTADINSLATD 726

Query: 629 -KTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKN-----GPVTKKARTEPLSL 682
            K +++ S ST   + +DW     E  + ++ E   E ++       P  KK  T  ++L
Sbjct: 727 GKLLKLNSRST---LAMDWDS---ETRSLYYDEQESEAYEKHVSMLQPQKKKKTT--MAL 778

Query: 683 YTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKL 742
             C+E F   E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + KL
Sbjct: 779 RDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKL 838

Query: 743 ETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNF 802
           +T V FPI   N++++V N  S+R  +Y+L A++NHYG MG GHYTA+ K     +WY F
Sbjct: 839 DTVVEFPIRGLNMSEFVCNL-SARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYF 897

Query: 803 DDSHISPINEDDVKSAAAYVLFYRR 827
           DDS++S  +ED + + AAYVLFY+R
Sbjct: 898 DDSNVSLASEDQIVTKAAYVLFYQR 922


>gi|62897009|dbj|BAD96445.1| ubiquitin specific protease, proto-oncogene isoform b variant [Homo
           sapiens]
          Length = 916

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 295/914 (32%), Positives = 428/914 (46%), Gaps = 166/914 (18%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 41  WFKQWKKYVGFD----SWDMYNVGEH--------NLFPGPIDNSGLFSDPESQ------T 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 83  LKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 142

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T
Sbjct: 143 CENSDPTNVLS-CHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNT 201

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS 234
           + DA +   Q +++E   N +GT  + ++Q NG                      G+SAS
Sbjct: 202 VQDAGLYQGQVLVIEP-QNEDGTWPRQTLQSNG---------------------SGFSAS 239

Query: 235 KGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCL 294
                  SS I                            GL GL NLGNTCFMNSA+QCL
Sbjct: 240 YNCQEPPSSHIQP--------------------------GLCGLGNLGNTCFMNSALQCL 273

Query: 295 VHTPEFARYF-REDYRREINWQNPLGMV-------------------------------- 321
            +T     YF +++Y  EIN  NPLGM                                 
Sbjct: 274 SNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHAAPRMFKTQVG 333

Query: 322 ---------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHI 366
                          ELLAFLLDGLHEDLNRVK KPY++ KDA+GRPD   A+E W NH 
Sbjct: 334 RFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVAAEEAWENHR 393

Query: 367 ARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSA 426
            RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL     R M V +  +D   
Sbjct: 394 LRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEVFLVPADPHC 453

Query: 427 LPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTI 484
            P+ Y VTVP  G   DL + L  +  +  +E + VA++ NH   +   +D+    L+ I
Sbjct: 454 RPTQYRVTVPLMGAVSDLCEALSRLSGIA-AENMVVADVYNHRFHKIFQMDE---GLNHI 509

Query: 485 KDDDHLAAYRVPKL-VKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVIS 543
              D +  Y V    V  +  + L    +E++   + T+S    Y  PL+ S+ +  +  
Sbjct: 510 MPRDDIFVYEVCSTSVDGSECVTLPVYFRERKSRPSSTSSASALYEQPLLLSVPKHKLTL 569

Query: 544 SGKIQSTVQRMLSPFLKKESLMHADSFDPSSM---------------------------- 575
               Q+   R +S ++K+      D F  S +                            
Sbjct: 570 ESLYQAVCDR-ISRYVKQPL---PDEFGSSPLEPGACNGSRNSCEGEDEEEMEHQEEGKE 625

Query: 576 -VTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGD-KTIRI 633
            ++  + SGE    +  +   +     +          LV+        S+  D K +++
Sbjct: 626 QLSETEGSGEDEPGNDPSETTQKKIKGQPCPKRLFTFSLVNSYGTADINSLAADGKLLKL 685

Query: 634 PSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREE 693
            S ST   + +DW  +    Y         E   +    +K +   ++L  C+E F   E
Sbjct: 686 NSRST---LAMDWDSETRRLYYDEQESEAYEKHVSMLQPQKKKKTTVALRDCIELFTTME 742

Query: 694 PLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDF 753
            L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + KL+T V FPI   
Sbjct: 743 TLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGL 802

Query: 754 NLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINED 813
           N++++V N  S+R  +Y+L A++NHYG MG GHYTA+ K     +WY FDDS++S  +ED
Sbjct: 803 NMSEFVCNL-SARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLASED 861

Query: 814 DVKSAAAYVLFYRR 827
            + + AAYVLFY+R
Sbjct: 862 QIVTKAAYVLFYQR 875


>gi|115529049|gb|AAI25132.1| Ubiquitin specific peptidase 4 (proto-oncogene) [Homo sapiens]
          Length = 963

 Score =  400 bits (1029), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 306/921 (33%), Positives = 442/921 (47%), Gaps = 133/921 (14%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 41  WFKQWKKYVGFD----SWDMYNVGEH--------NLFPGPIDNSGLFSDPESQ------T 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 83  LKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 142

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T
Sbjct: 143 CENSDPTNVLS-CHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNT 201

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDN-------GFAEKKASSVLVEPSKSSLSI 227
           + DA +   Q +++E   N +GT  + ++Q          F     SS     S S+  I
Sbjct: 202 VQDAGLYQGQVLVIEP-QNEDGTWPRQTLQSKSSTAPSRNFTTSPKSSASPYSSVSASLI 260

Query: 228 AGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFM 287
           A G S S  T   HSS +S   +  SA  +     SS +       GL GL NLGNTCFM
Sbjct: 261 ANGDSTS--TCGMHSSGVSRGGSGFSASYNCQEPPSSHIQP-----GLCGLGNLGNTCFM 313

Query: 288 NSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------------------------- 321
           NSA+QCL +T     YF +++Y  EIN  NPLGM                          
Sbjct: 314 NSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPR 373

Query: 322 ----------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVAD 359
                                 ELLAFLLDGLHEDLNRVK KPY++ KDA+GRPD  VA 
Sbjct: 374 MFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAK 433

Query: 360 EYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTV 419
           E W NH  RNDS+IVD   G +KSTL CP C KVSVTFDPF YL+LPL     R M V +
Sbjct: 434 EAWENHRLRNDSVIVDTFHGLFKSTLGCPECAKVSVTFDPFCYLTLPLPLKKDRVMEVFL 493

Query: 420 FTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDP 477
             +D    P+ Y VTVP  G   DL + L  +  +  +E + VA++ NH   +   +D+ 
Sbjct: 494 VPADPHCRPTQYRVTVPLMGAVSDLCEALSRLSGIA-AENMVVADVYNHRFHKIFQMDE- 551

Query: 478 LISLSTIKDDDHLAAYRVPKL-VKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSI 536
              L+ I   D +  Y V    V  +  + L    +E++   + T+S    YG PL+ S+
Sbjct: 552 --GLNHIMPRDDIFVYEVCSTSVDGSECVTLPVYFRERKSRPSSTSSASALYGQPLLLSV 609

Query: 537 SRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSM--------------------- 575
            +  +      Q+   R +S ++K+      D F  S +                     
Sbjct: 610 PKHKLTLESLYQAVCDR-ISRYVKQPL---PDEFGSSPLEPGACNGSRNSCEGEDEEEME 665

Query: 576 --------VTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEG 627
                   ++  + SGE    +  +   +     +          LV+        S+  
Sbjct: 666 HQEEGKEQLSETEGSGEDEPGNDPSETTQKKIKGQPCPKRLFTFSLVNSYGTADINSLAA 725

Query: 628 D-KTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCL 686
           D K +++ S ST   + +DW  +    Y         E   +    +K +   ++L  C+
Sbjct: 726 DGKLLKLNSRST---LAMDWDSETRRLYYDEQESEAYEKHVSMLQPQKKKKTTVALRDCI 782

Query: 687 EAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFV 746
           E F   E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + KL+T V
Sbjct: 783 ELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVV 842

Query: 747 NFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSH 806
            FPI   N++++V N  S+R  +Y+L A++NHYG MG GHYTA+ K     +WY FDDS+
Sbjct: 843 EFPIRGLNMSEFVCNL-SARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSN 901

Query: 807 ISPINEDDVKSAAAYVLFYRR 827
           +S  +ED + + AAYVLFY+R
Sbjct: 902 VSLASEDQIVTKAAYVLFYQR 922


>gi|197099624|ref|NP_001125307.1| ubiquitin carboxyl-terminal hydrolase 4 [Pongo abelii]
 gi|75055118|sp|Q5RCD3.1|UBP4_PONAB RecName: Full=Ubiquitin carboxyl-terminal hydrolase 4; AltName:
           Full=Deubiquitinating enzyme 4; AltName: Full=Ubiquitin
           thioesterase 4; AltName:
           Full=Ubiquitin-specific-processing protease 4
 gi|55727639|emb|CAH90574.1| hypothetical protein [Pongo abelii]
          Length = 963

 Score =  400 bits (1029), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 311/927 (33%), Positives = 449/927 (48%), Gaps = 145/927 (15%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV       + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 41  WFKQWKKYVG----FGSWDMYNVGEH--------NLFPGPIDNSGLFSDPESQ------T 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 83  LKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 142

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLEQIC-IWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E+   +W+ Y    +  ++ +D T
Sbjct: 143 CENSDPTNVLS-CHFSKADTIATIEKEMRKLFNIPAEREARLWNKYMSNTYEQLSKLDNT 201

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQD--------NGFAEKKASSVLVEPSKSSLS 226
           + DA + + Q +++E   N +GT  + ++Q         N     K+S+        SL 
Sbjct: 202 VQDAGLYLGQVLVIEP-QNEDGTWPRQTLQSKSSTAPSRNFTTSPKSSASPYSSVSDSL- 259

Query: 227 IAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCF 286
           IA G S S  T   HSS +S   +  SA  +     SS +       GL GL NLGNTCF
Sbjct: 260 IANGDSTS--TCGMHSSGVSRGGSGFSASYNCQEPPSSHIQP-----GLCGLGNLGNTCF 312

Query: 287 MNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------------------------ 321
           MNSA+QCL +T     YF +++Y  EIN  NPLGM                         
Sbjct: 313 MNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAP 372

Query: 322 -----------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVA 358
                                  ELLAFLLDGLHEDLNRVK KPY++ KDA+GRPD  VA
Sbjct: 373 RMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDVVVA 432

Query: 359 DEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVT 418
            E W NH  RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL     R M V 
Sbjct: 433 KEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEVF 492

Query: 419 VFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDD 476
           +  +D    P+ Y VTVP  G   DL + L  +  +  +E + VA++ NH   +   +D+
Sbjct: 493 LVPADPHCRPTQYRVTVPLMGAVSDLCEALSRLSGIA-AENMVVADVYNHRFHKIFQMDE 551

Query: 477 PLISLSTIKDDDHLAAYRVPKL-VKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSS 535
               L+ I   D +  Y V    V  +  + L    +E++   + T+S    YG PL+ S
Sbjct: 552 ---GLNHIMPRDDIFVYEVCSTSVDGSECVTLPVYFRERKSRPSSTSSASALYGQPLLLS 608

Query: 536 ISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSM-------------------- 575
           + +  +      Q+   R +S ++K+      D F  S +                    
Sbjct: 609 VPKHKLTLESLYQAVCDR-ISRYVKQPL---PDEFGSSPLEPGACNGSRNSCEGEDEEEM 664

Query: 576 ---------VTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVE 626
                    ++  + SGE    S  +   +     +          LV+        S+ 
Sbjct: 665 EHQEEGKEQLSETEGSGEDEPGSDPSETTQKKIKGQPCPKRLFTFSLVNSYGTADINSLA 724

Query: 627 GD-KTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKN-----GPVTKKARTEPL 680
            D K +++ S ST   + +DW     E  + ++ E   E ++       P  KK  T  +
Sbjct: 725 ADGKLLKLNSRST---LAMDWDS---ETRSLYYDEQESEAYEKHVSMLQPQKKKKTT--V 776

Query: 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKH 740
           +L  C+E F   E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + 
Sbjct: 777 ALRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKSDLWSLPKILVVHLKRFSYNRYWRD 836

Query: 741 KLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWY 800
           KL+T V FPI   N++++V N  S+R  +Y+L A++NHYG MG GHYTA+ K     +WY
Sbjct: 837 KLDTVVEFPIRGLNMSEFVCNL-SARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWY 895

Query: 801 NFDDSHISPINEDDVKSAAAYVLFYRR 827
            FDDS++S  +ED + + AAYVLFY+R
Sbjct: 896 YFDDSNVSLASEDQIVTKAAYVLFYQR 922


>gi|395516315|ref|XP_003762336.1| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal
           hydrolase 4 [Sarcophilus harrisii]
          Length = 989

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 306/923 (33%), Positives = 442/923 (47%), Gaps = 135/923 (14%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G + L             P  IDNS L +D  ++       
Sbjct: 64  WFKQWKKYVGFDSWDMYNVGENNL------------FPGPIDNSGLFSDPESQ------T 105

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 106 LKEHLIDELDYVLVPTEAWNKLVNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 165

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++  D T
Sbjct: 166 CENSDPNNMLS-CHFSKADTIATIEKEMRKLFNIPDERETRLWNKYMSNTYEQLSKPDNT 224

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS 234
           + DA +   Q +++E   N +GT  + ++Q    +  +A +   + S SS S       +
Sbjct: 225 VQDAGLYQGQVLVIEP-QNEDGTWPRQTLQSKS-STSRAFTTSPKSSASSYSSMSASPIT 282

Query: 235 KGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCL 294
            G S N SS + +S          N+  S   +      GL GL NLGNTCFMNSA+QCL
Sbjct: 283 NGDSAN-SSGVHSSGLSRGGSGFSNSY-SCRESQSHTQPGLCGLGNLGNTCFMNSALQCL 340

Query: 295 VHTPEFARYF-REDYRREINWQNPLGMV-------------------------------- 321
            +T     YF + +Y  EIN  NPLGM                                 
Sbjct: 341 SNTAPLTEYFLKNEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRNTQVAPRMFKTQVG 400

Query: 322 ---------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHI 366
                          ELLAFLLDGLHEDLNRVK KPY++ KDA+GRPD  VA E W NH 
Sbjct: 401 RFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDLVVAKEAWENHR 460

Query: 367 ARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSA 426
            RNDS+IVD   G +KSTLVCP C+K+SVTFDPF YL+LPL     RTM V + ++D   
Sbjct: 461 LRNDSVIVDTFHGLFKSTLVCPECSKISVTFDPFCYLTLPLPLKKDRTMEVFLVSADPQC 520

Query: 427 LPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTI 484
            P+ Y VTVP  G   DL + L  +  +  +E + V ++ NH   +   +D+    L+ I
Sbjct: 521 RPTQYRVTVPMMGAVSDLCEALSKLSGIA-AENMVVTDVYNHRFHKIFQMDE---GLNHI 576

Query: 485 KDDDHLAAYRVPKLVK---KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDV 541
              D +  Y V  + +   + V   +  R  E++     T+S    YG PL+ S+ +  +
Sbjct: 577 MTRDDIFVYEVCNVTEDGSECVTFPVYFR--ERKIRQTSTSSGTVLYGQPLLISVPKHKL 634

Query: 542 ISSGKIQSTVQRMLSPFLK--------KESLMHADSFDPSSMVTTVDPSGEAHSNSSSNI 593
                 Q   +R +S ++K        K  L  A     + +          H + S   
Sbjct: 635 TIDYLYQVICER-ISRYIKHPLPDDSPKPHLDSATCNGSNGICEGEXEEEMEHQDESKGQ 693

Query: 594 AKEDASSSKAVTLP---------NLP--------------LQLVDESNVCFDLSVEGD-K 629
             E  + S   ++          N+P                LV+        S+  D K
Sbjct: 694 PAETETCSSEDSVEHELGNESHQNVPKRVRGQHCKKRLFTFSLVNSYGTTDINSLAADGK 753

Query: 630 TIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKN-----GPVTKKARTEPLSLYT 684
            +++ S ST   V VDW     E    H+ E   E +        P  KK  T  ++L  
Sbjct: 754 LLKLNSRST---VAVDWD---TETRCLHYDEQESEAYDKHSSMLQPQKKKKTT--VALRD 805

Query: 685 CLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLET 744
           C+E F   E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + KL+T
Sbjct: 806 CIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDT 865

Query: 745 FVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDD 804
            V FPI D +++++V +  ++   +Y+L A++NHYG MG GHYTA+ K     +WY FDD
Sbjct: 866 VVEFPIRDLHMSEFVCDP-AAGPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDD 924

Query: 805 SHISPINEDDVKSAAAYVLFYRR 827
           S++S  +ED + + AAYVLFY+R
Sbjct: 925 SNVSLASEDQIVTKAAYVLFYQR 947


>gi|296225191|ref|XP_002758385.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 isoform 1
           [Callithrix jacchus]
          Length = 963

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 303/923 (32%), Positives = 443/923 (47%), Gaps = 137/923 (14%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  S+ +H        +  P  IDNS L +D  ++       
Sbjct: 41  WFKQWKKYVGFD----SWDMYSMGQH--------NVFPGPIDNSGLFSDPESQ------T 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + R V+  GL      VEVY L L+L
Sbjct: 83  LKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRTVVEHGLFVKHCKVEVYLLELKL 142

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T
Sbjct: 143 CENSDPTNVLS-CHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNT 201

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQD-------NGFAEKKASSVLVEPSKSSLSI 227
           + DA +   Q +++E   N +GT  + ++Q          F     SS     S S+  I
Sbjct: 202 VQDAGLYQGQVLVIEP-QNEDGTWPRQTLQSISSTAPSRNFTTSPKSSASPYSSVSASPI 260

Query: 228 AGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFM 287
           A G S+S     +       S   AS    +    SS +       GL GL NLGNTCFM
Sbjct: 261 ANGDSSSTSGMHSSGVSRGGSGFSASYNCQEP--ASSHIQP-----GLCGLGNLGNTCFM 313

Query: 288 NSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------------------------- 321
           NSA+QCL +T     YF +++Y  EIN  NPLGM                          
Sbjct: 314 NSALQCLSNTAPLTDYFLKDEYEAEINRINPLGMKGEIAEAYAELIKQMWSGRDAHVAPR 373

Query: 322 ----------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVAD 359
                                 ELLAFLLDGLHEDLNRVK KPY++ KDA+GRPD  VA 
Sbjct: 374 MFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDSVVAK 433

Query: 360 EYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTV 419
           E W NH  RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL     R M V +
Sbjct: 434 EAWENHKLRNDSVIVDTFHGLFKSTLVCPECFKVSVTFDPFCYLTLPLPLKKDRVMEVFL 493

Query: 420 FTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDP 477
             +D    P+ Y VTVP  G   DL + L  +  +  +E + V ++ NH   +   +D+ 
Sbjct: 494 VPADPHCRPTQYHVTVPLMGAVSDLCEALSRLSGIS-AENMVVTDVYNHRFHKIFQMDE- 551

Query: 478 LISLSTIKDDDHLAAYRVPKL-VKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSI 536
              L+ I   D +  Y V    V  +  + L    +E++   + T+S    YG PL+ S+
Sbjct: 552 --GLNHIMPRDDIFVYEVCSTSVDGSECVTLPVYFRERKSRPSSTSSGAALYGQPLLLSV 609

Query: 537 SRDDVISSGKIQSTVQRMLSPFLKK--ESLMHADSFDPSSMVTT---------------- 578
            +  +      Q+   R +S ++K+       +   +P +   +                
Sbjct: 610 PKQKLTLDSLYQAVCDR-ISRYVKQPLPDEFGSSPLEPGACSGSRNSCEGDDEEEMEHQE 668

Query: 579 ------VDPSGEAHSNSSSNIAKEDASSSKAVTLPN--LPLQLVDESNVCFDLSVEGD-K 629
                 ++  G    +  ++  +      K    P       LV+        S+  D K
Sbjct: 669 EGNEQPLETKGSGEDDMGNDPGETTQKKIKGQPCPKRLFTFSLVNSYGTADINSLATDGK 728

Query: 630 TIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKN-----GPVTKKARTEPLSLYT 684
            +++ S ST   + +DW     E  + ++ E   E ++       P  KK  T  ++L  
Sbjct: 729 LLKLNSRST---LAIDWDS---ETRSLYYDEQESEAYEKHVSMLQPQKKKKTT--VALRD 780

Query: 685 CLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLET 744
           C+E F   E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + KL+T
Sbjct: 781 CIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDT 840

Query: 745 FVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDD 804
            V FPI   N++++V N+ S+R  +Y+L A++NHYG MG GHYTA+ K     +WY FDD
Sbjct: 841 VVEFPIRGLNMSEFVCNQ-SARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDD 899

Query: 805 SHISPINEDDVKSAAAYVLFYRR 827
           S++S  +ED + + AAYVLFY+R
Sbjct: 900 SNVSLASEDQIVTKAAYVLFYQR 922


>gi|126335815|ref|XP_001367983.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 isoform 2
           [Monodelphis domestica]
          Length = 920

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 303/921 (32%), Positives = 429/921 (46%), Gaps = 177/921 (19%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G + L             P  IDNS L +D  ++       
Sbjct: 41  WFKQWKKYVGFDSWDMYNVGENNL------------FPGPIDNSGLFSDPESQ------T 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 83  LKEHLIDELDYVLVPTEAWNKLVNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 142

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++  D T
Sbjct: 143 CENSDPTNMLS-CHFSKADTIATIEKEMRKLFNIPDERETRLWNKYMSNTYEQLSKPDNT 201

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS 234
           + DA +   Q +++E   N +GT  + ++Q  G                      G+S S
Sbjct: 202 VQDAGLYQGQVLVIEP-QNEDGTWPRQTLQSKG---------------------SGFSNS 239

Query: 235 KGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCL 294
                + S    T P                        GL GL NLGNTCFMNSA+QCL
Sbjct: 240 YSCRESQSH---TQP------------------------GLCGLGNLGNTCFMNSALQCL 272

Query: 295 VHTPEFARYFRED-YRREINWQNPLGMV-------------------------------- 321
            +T     YF +D Y  EIN  NPLGM                                 
Sbjct: 273 SNTAPLTEYFLKDKYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRNTQVAPRMFKTQVG 332

Query: 322 ---------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHI 366
                          ELLAFLLDGLHEDLNRVK KPY++ KDA+GRPD  VA E W NH 
Sbjct: 333 RFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDLVVAKEAWENHR 392

Query: 367 ARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSA 426
            RNDS+IVD   G +KSTLVCP C+K+SVTFDPF YL+LPL     RTM V + ++D   
Sbjct: 393 LRNDSVIVDTFHGLFKSTLVCPECSKISVTFDPFCYLTLPLPLKKDRTMEVFLVSADPQC 452

Query: 427 LPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTI 484
            P+ Y VTVP  G   DL + L  +  +  +E + V ++ NH   +   +D+    L+ I
Sbjct: 453 RPTQYRVTVPMMGAVSDLCEALSKLSGIA-AENMVVTDVYNHRFHKIFQMDE---GLNHI 508

Query: 485 KDDDHLAAYRVPKLVK---KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDV 541
              D +  Y V    +   + V   +  R  E++     ++S    YG PL+ S+ +  +
Sbjct: 509 MTRDDIFVYEVCNTAEDGSECVTFPVYFR--ERKIRQTSSSSGTVLYGQPLLISVPKHKL 566

Query: 542 ISSGKIQSTVQR----MLSPFLKKESLMHADS--FDPSSMVTTVDPSGEAHSNSSSNIAK 595
                 Q   +R    +  P        H DS  ++ S+ +   +     H + S   A 
Sbjct: 567 TLDYLYQVICERISRYIKHPLPDDSPRPHLDSATYNGSNGICEGEEEEMEHQDDSKGQAT 626

Query: 596 EDASSSKA---------VTLPNLP--------------LQLVDESNVCFDLSVEGD-KTI 631
           E  S S            +  N+P                LV+        S+  D K +
Sbjct: 627 ETESCSTEDCSEHELGNESCQNVPKRVRSQHCKKRLFTFSLVNSYGTTDINSLAADGKLL 686

Query: 632 RIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKN-----GPVTKKARTEPLSLYTCL 686
           ++ S ST   V VDW     E    H+ E   E +        P  KK  T  ++L  C+
Sbjct: 687 KLNSRST---VAVDWD---TETRCLHYDEQESEAYDKHSSMLQPQKKKKTT--VALRDCI 738

Query: 687 EAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFV 746
           E F   E L   D WYCP CK+ +QA+KK DLW LP+VLV+HLKRFSY+R  + KL+T V
Sbjct: 739 ELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKVLVVHLKRFSYNRYWRDKLDTVV 798

Query: 747 NFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSH 806
            FPI D +++++V +  ++   +Y+L A++NHYG MG GHYTA+ K     +WY FDDS+
Sbjct: 799 EFPIRDLHMSEFVCDP-AAGPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSN 857

Query: 807 ISPINEDDVKSAAAYVLFYRR 827
           +S  +ED + + AAYVLFY+R
Sbjct: 858 VSLASEDQIVTKAAYVLFYQR 878


>gi|440893726|gb|ELR46396.1| Ubiquitin carboxyl-terminal hydrolase 4 [Bos grunniens mutus]
          Length = 963

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 295/920 (32%), Positives = 431/920 (46%), Gaps = 131/920 (14%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G   L             P  IDNS L +D  ++       
Sbjct: 41  WFKQWKKYVGFDSWDVYDVGEQNL------------YPGPIDNSGLFSDPESQ------T 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 83  LKEHLIDELDYVLVPAEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 142

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T
Sbjct: 143 CENSDPTNVLS-CHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNT 201

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDN-------GFAEKKASSVLVEPSKSSLSI 227
           + DA +   Q +++E   N +GT  + + Q          F     SS     S S+  I
Sbjct: 202 VQDAGLYQGQVLVIEP-QNEDGTWPRQTQQSKSSTAPSRNFTTSPKSSASPYSSVSASPI 260

Query: 228 AGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFM 287
           A G S +     +       S   AS    ++ L            GL GL NLGNTCFM
Sbjct: 261 ANGDSTNTSGMHSSGVSRGGSGFSASYNCQESPLTH-------VQPGLCGLGNLGNTCFM 313

Query: 288 NSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------------------------- 321
           NSA+QCL +T     YF +++Y  EIN  NPLGM                          
Sbjct: 314 NSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPR 373

Query: 322 ----------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVAD 359
                                 ELLAFLLDGLHEDLNRVK KPY++ KDA+GRPD  VA 
Sbjct: 374 MFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAK 433

Query: 360 EYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTV 419
           E W NH  RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL     R M + +
Sbjct: 434 EAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEIFL 493

Query: 420 FTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDP 477
             +D    P+ Y V VP  G   DL + L  +  +  +E + V ++ NH   +   +D+ 
Sbjct: 494 VPADPRCRPTQYRVVVPLMGAVSDLCEALSKLSGIA-AENMVVTDVYNHRFHKIFQMDE- 551

Query: 478 LISLSTIKDDDHLAAYRVPKLV---KKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVS 534
              L+ I   D +  Y V        + V L +  R ++  P +  T +    YG PL+ 
Sbjct: 552 --GLNHIMPRDDIFVYEVCSTSPDGSECVTLPVYFRERKSRPSSTSTGA--VLYGQPLLV 607

Query: 535 SISRDDVISSGKIQSTVQRMLSPFLKK-------ESLMHADSFDPS-------------- 573
           S+ +  +      Q+  +R +S ++K+        S +   + + S              
Sbjct: 608 SVPKHKLTLESLYQAVCER-ISRYIKQPLPDESGSSPLELGACNGSRSGCAGEDEEEMEH 666

Query: 574 -----SMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGD 628
                  ++  + SG+    S    A +  +  +          LV+        S+  D
Sbjct: 667 QEEGREQLSETEGSGDDEPGSDHGEATQKKNKGRPCPRRLFTFSLVNSYGTADINSLATD 726

Query: 629 -KTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLE 687
            K +++ S ST   + +DW  +    Y         E   +    +K +   ++L  C+E
Sbjct: 727 GKLLKLNSRST---LAIDWDSETRSCYYNEQESETYEKHVSMLQPQKKKKTAVALRDCIE 783

Query: 688 AFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVN 747
            F   E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + KL+T V 
Sbjct: 784 LFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVE 843

Query: 748 FPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHI 807
           FP+   N++++V +  S+R  +Y+L A++NHYG MG GHYTA+ K     +WY FDDS++
Sbjct: 844 FPVRGLNMSEFVCDP-SARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNV 902

Query: 808 SPINEDDVKSAAAYVLFYRR 827
           S   ED + + AAYVLFY+R
Sbjct: 903 SLACEDQIVTKAAYVLFYQR 922


>gi|427795287|gb|JAA63095.1| Putative ubiquitin c-terminal hydrolase posttranslational
           modification, partial [Rhipicephalus pulchellus]
          Length = 929

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 294/904 (32%), Positives = 432/904 (47%), Gaps = 132/904 (14%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W+  W  YV  D  + + +      H           P  IDNS L+ +  +       E
Sbjct: 45  WFNQWKRYVGYDSWDTSNEIGEQTTH-----------PGPIDNSPLLREDNSG------E 87

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           I D L+E  DY+LLPQE W+++ +WYG   G   L RKVI  GL      VEVYP+  +L
Sbjct: 88  IRDHLIEDLDYLLLPQEAWDKMVAWYGLTQGQSPLPRKVIEIGLFVKNCKVEVYPMEFKL 147

Query: 118 LVMPRGECSTIR-ISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                 +   +R  SK +TI ++ +   +IF +  E +  +W       +  ++D  RT+
Sbjct: 148 CTNSNSDQFVMRRFSKVDTIAQVEKDMRTIFKVAPEKETRVWSRCSSNTYEQLSDRSRTI 207

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            D  +   Q +L+E               D+G   ++A S     + S  S    + A  
Sbjct: 208 QDIGLYPSQILLLE------------ERNDDGSWPRQAKSSKPPYTNSRGSEHKTYGAPG 255

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASV-GLTGLLNLGNTCFMNSAIQCL 294
            T       I+T    A +   ++  GS     +G +  GL GL N+GNTCFMNSA+QC+
Sbjct: 256 NT-------IATRSYSAVSSSYNSYSGSCNYDLQGGNTPGLCGLGNIGNTCFMNSALQCM 308

Query: 295 VHTPEFARYFRED-YRREINWQNPLGM--------------------------------- 320
            +TP    YF  D Y  E+N  NPLGM                                 
Sbjct: 309 SNTPPLTEYFVTDRYLSELNDSNPLGMRGEIAKSYADLIKVMWSGNCSSVIPRPFKMAVG 368

Query: 321 --------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHI 366
                          EL+AFLLDGLHEDLNRV +KPYI+ KD+DGRPDE VA E W N++
Sbjct: 369 RFAPQFSGFQQQDCQELMAFLLDGLHEDLNRVINKPYIELKDSDGRPDEVVAQEAWHNYL 428

Query: 367 ARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSA 426
            RN+SIIVD+  G  KSTLVCP C+K+SVTFDPF YLSLPL     + + + +  +D   
Sbjct: 429 LRNNSIIVDIFHGLLKSTLVCPDCHKLSVTFDPFCYLSLPLPYKKEKPLELILVRADPHE 488

Query: 427 LPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLD--DPLISLSTI 484
            P    VTV K    +D+   +  +  +  ++ L V E+ NH   R L   D + +L   
Sbjct: 489 KPIKVKVTVSKMSTIQDVCNSISRLMDIP-ADRLVVTEVHNHRFLRVLTHADQVDTLER- 546

Query: 485 KDDDHLAAYRVPKLVKKA-VFLQLIHRLQEQEPGA-AQTTSQWKAYGTPLVSSISRDDV- 541
            D   +  Y +P     + +FL +  R +  +    ++       +  P   S+   D  
Sbjct: 547 SDACDVFVYEMPHSPDNSTLFLPVYMREKSSQCATNSRAAPSCHLFSYPFFVSVPAKDCT 606

Query: 542 --ISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDAS 599
             +   +I + + R ++P    +    ++S +        + +GE H+      A  D  
Sbjct: 607 YDMLYERILNCLVRYVTPPKPGDDWCGSESME--------EQNGELHNGQDELFADADEE 658

Query: 600 --------------SSKAVTLPNLPLQLVDESNVCFDLS--VEGDKTIRIPSSSTSIVVY 643
                          SK   L    LQ ++E N   +L+  V+  + +++   +    + 
Sbjct: 659 MPSETSPEPPPKECPSKRRRL--FTLQCINE-NSSLNLASLVDNGQPLKL---APRTYLG 712

Query: 644 VDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYC 703
            DW  K+  +Y      +  +V  +  V ++A    L L  CLE F   E L  ED WYC
Sbjct: 713 ADWLPKVRAQYFDEAKAD--DVLIHESVHQRAVKRQLQLRECLELFTTTEKLGAEDPWYC 770

Query: 704 PQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKN 763
           P C+  +QA+KK DLW LP VL+IHLKRFSY+R  + K++T V+FPI D  +  Y+ N+ 
Sbjct: 771 PTCRSHKQATKKFDLWSLPRVLIIHLKRFSYNRFWRDKIDTHVDFPITDLCMDDYIINRK 830

Query: 764 SSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVL 823
              R +Y+L A+ NHYGGMG+GHYTA+ K  + ++WY+FDDS +S   ED+V S AAYVL
Sbjct: 831 HE-RAVYDLIAVANHYGGMGAGHYTAYAKNKETHKWYHFDDSSVSSATEDNVVSKAAYVL 889

Query: 824 FYRR 827
           FY R
Sbjct: 890 FYMR 893


>gi|449279659|gb|EMC87193.1| Ubiquitin carboxyl-terminal hydrolase 15 [Columba livia]
          Length = 982

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 315/942 (33%), Positives = 444/942 (47%), Gaps = 161/942 (17%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D      G    
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKD------GDSQS 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNRLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPGEKETRLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLS----IAGGW 231
            DA +   Q +++E   N +GT              +  S    P  S+ S    I+   
Sbjct: 199 QDAGLYQGQVLVIEQ-KNEDGT------------WPRGPSTPKSPGASNFSTLPKISSSL 245

Query: 232 SASKGTSRNHSSEIST--SPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNS 289
           S +     N + + S    P+  + ++ D     S         GL GL NLGNTCFMNS
Sbjct: 246 SNNYNNMNNRNVKNSNYCPPSYTAYKNYD----YSEPGRHNEQPGLCGLSNLGNTCFMNS 301

Query: 290 AIQCLVHTPEFARYFRED-YRREINWQNPLGM---------------------------- 320
           AIQCL +TP    YF  D Y+ E+N+ NPLGM                            
Sbjct: 302 AIQCLSNTPPLTEYFLTDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKYSYVTPRAF 361

Query: 321 -------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEY 361
                               ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E 
Sbjct: 362 KTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEA 421

Query: 362 WANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFT 421
           W NH+ RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V +  
Sbjct: 422 WENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLVR 481

Query: 422 SDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLI 479
            D  A P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R   +D+   
Sbjct: 482 MDPLAKPMQYKVVVPKIGNILDLCTALSALSGVP-ADKMIVTDIYNHRFHRIFGMDE--- 537

Query: 480 SLSTIKDDDHLAAYRVPKLVKKAVFLQLIHR--LQEQEPGAAQTTSQWKAYGTPLVSSIS 537
           +LS I + D +  + +P + +     Q+I    L+E+    + + S    +G P + ++ 
Sbjct: 538 NLSNIMERDDIYVFEIP-INRTEDTEQVIIPVCLREKCRHTSYSHSGSSLFGQPFLIAVP 596

Query: 538 RDDVISSGKIQSTVQRMLSPFLK--------------------------------KESLM 565
           R++  +  K+ + +   +  ++K                                  S M
Sbjct: 597 RNN--TEDKLYNLLLLRMCRYVKTCTESEDTEGSLHCCKDHGINGNGPNGIHEEGSPSEM 654

Query: 566 HADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVT---LPNLPLQLVDESNVCFD 622
             D  D  S      PS   +S S  ++  ++ S +   T       PL    +    F 
Sbjct: 655 ETDEQDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTCKGQPLTGHKKRLFTFQ 714

Query: 623 LSVEGDKTI--------------RIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF-K 667
            +  G+  I              R P       + +DW  +L ++Y   F ++  E F K
Sbjct: 715 FNNLGNTDINYIKDDTRHIRFDDRQPRLDERSFLALDWDPELKKRY---FDDSAAEDFEK 771

Query: 668 NGPVTKKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLV 726
           +  V  K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VLV
Sbjct: 772 HESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLV 831

Query: 727 IHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGH 786
           +HLKRFSYSR M+ KL+T V FPI+D ++++++ N N+   + Y L A++NHYGGMG GH
Sbjct: 832 VHLKRFSYSRYMRDKLDTLVGFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGGH 890

Query: 787 YTAHIKLLDENRWYNFDDSHISPINEDD-VKSAAAYVLFYRR 827
           YTA  K  D+ +WY FDDS +S   ED  V S  +YVLFY+R
Sbjct: 891 YTAFAKNKDDGKWYYFDDSSVSTACEDQIVASTFSYVLFYQR 932


>gi|348580469|ref|XP_003476001.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like [Cavia
           porcellus]
          Length = 947

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 310/938 (33%), Positives = 433/938 (46%), Gaps = 165/938 (17%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E   N +GT  +                   PS      A  +SA  
Sbjct: 199 QDAGLYQGQVLVIEQ-KNEDGTWPRG------------------PSAPKSPGASNFSALP 239

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGS---------SGVTTRGASVGLTGLLNLGNTCF 286
             S +  S    + N  + ++S+  L S         S         GL GL NLGNTCF
Sbjct: 240 KISPSSLSNNYNNINNRNVKNSNYCLPSYTAYKNYDYSEPGRNNEQPGLCGLSNLGNTCF 299

Query: 287 MNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM------------------------- 320
           MNSAIQCL +TP    YF  D Y+ E+N+ NPLGM                         
Sbjct: 300 MNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTP 359

Query: 321 ----------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVA 358
                                  ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA
Sbjct: 360 RAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVA 419

Query: 359 DEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVT 418
           +E W NH+ RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V 
Sbjct: 420 EEAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVY 479

Query: 419 VFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDP 477
           +   D    P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R F  D 
Sbjct: 480 LVRMDPLTKPMQYKVVVPKIGNILDLCTALSGLSGVP-ADKMIVTDIYNHRFHRIFAVDE 538

Query: 478 LISLSTIKDDDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSI 536
            +S    +DD ++    + +    + V + +  R + +       T     +G P + ++
Sbjct: 539 NLSSIMERDDIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGS-SLFGQPFLMAV 597

Query: 537 SRDDVISSGKIQSTVQRMLSPFLK--------------------------------KESL 564
            R++  +  K+ + +   +  ++K                                  S 
Sbjct: 598 PRNN--TEDKLYNLLLLRMCRYVKISTETEDTEGSLHCCKDQNINGNGPNGIHEEGSPSE 655

Query: 565 MHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLS 624
           M  D  D  S      PS   +S S  ++  ++ S +   T      QL       F   
Sbjct: 656 METDEPDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEETCKGQLTGHKERLFTFQ 715

Query: 625 VEG-------------------DKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEV 665
                                 D+ +R+   S    + +DW  +L ++Y   F EN  E 
Sbjct: 716 FNNLGNTDINYIKDDIRHIRFDDRQLRLDERS---FLALDWDPELKKRY---FDENAAED 769

Query: 666 F-KNGPVTKKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPE 723
           F K+  V  K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP 
Sbjct: 770 FEKHESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPP 829

Query: 724 VLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMG 783
           VLV+HLKRFSYSR M+ KL+T V+FPI+D ++++++ N N+   Q Y L A++NHYGGMG
Sbjct: 830 VLVVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCQ-YNLIAVSNHYGGMG 888

Query: 784 SGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAY 821
            GHYTA  K  D+ +WY FDDS +S  +ED + S AAY
Sbjct: 889 GGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAY 926


>gi|402886701|ref|XP_003906762.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like, partial
           [Papio anubis]
          Length = 917

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 300/882 (34%), Positives = 424/882 (48%), Gaps = 133/882 (15%)

Query: 56  GAGPEIVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYP 112
           G    + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY 
Sbjct: 10  GDAQSLKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYL 69

Query: 113 LRLQLLVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMND 170
             L+L          T R SK +TI  + +    IF +  E +  +W+ Y       +N 
Sbjct: 70  TELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKYMSNTFEPLNK 129

Query: 171 MDRTLDDANIQMDQDILVEVLDNVNGT--NCKSSIQDNGFAEKKASSVLVEPSKSSLSIA 228
            D T+ DA +   Q +++E   N +GT     S+ +  G     AS+    P  S  S++
Sbjct: 130 PDSTIQDAGLYQGQVLVIEQ-KNEDGTWPRGPSTPKSPG-----ASNFSTLPKISPSSLS 183

Query: 229 GGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMN 288
             ++     +  +S+     P+  + ++ D     S         GL GL NLGNTCFMN
Sbjct: 184 NNYNNMNNRNVKNSN--YCLPSYTAYKNYD----YSEPGRNNEQPGLCGLSNLGNTCFMN 237

Query: 289 SAIQCLVHTPEFARYFRED-YRREINWQNPLGM--------------------------- 320
           SAIQCL +TP    YF  D Y+ E+N+ NPLGM                           
Sbjct: 238 SAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRA 297

Query: 321 --------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADE 360
                                ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E
Sbjct: 298 FKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEE 357

Query: 361 YWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVF 420
            W NH+ RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V + 
Sbjct: 358 AWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLV 417

Query: 421 TSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLI 479
             D    P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R F  D  +
Sbjct: 418 RMDPLTKPMQYKVVVPKIGNILDLCTALSALSGIP-ADKMIVTDIYNHRFHRIFAMDENL 476

Query: 480 SLSTIKDDDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISR 538
           S    +DD ++    + +    + V + +  R + +       T     +G P + ++ R
Sbjct: 477 SSIMERDDIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGS-SLFGQPFLMAVPR 535

Query: 539 DDVISSGKIQSTVQRMLSPFLK--------------------------------KESLMH 566
           ++  +  K+ + +   +  ++K                                  S M 
Sbjct: 536 NN--TEDKLYNLLLLRMCRYVKISTETEETEGSLHCCKDQNINGNGPNGIHEEGSPSEME 593

Query: 567 ADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVE 626
            D  D  S      PS   +S S  ++  ++ S +   T      QL       F     
Sbjct: 594 TDEPDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTCKGQLTGHKKRLFTFQFN 653

Query: 627 G-------------------DKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF- 666
                               D+ +R+   S    + +DW   L ++Y   F EN  E F 
Sbjct: 654 NLGNTDINYIKDDTRHIRFDDRQLRLDERS---FLALDWDPDLKKRY---FDENAAEDFE 707

Query: 667 KNGPVTKKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVL 725
           K+  V  K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VL
Sbjct: 708 KHESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVL 767

Query: 726 VIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSG 785
           V+HLKRFSYSR M+ KL+T V+FPI+D ++++++ N N+   + Y L A++NHYGGMG G
Sbjct: 768 VVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGG 826

Query: 786 HYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           HYTA  K  D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 827 HYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 868


>gi|338714892|ref|XP_003363165.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Equus caballus]
          Length = 916

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 294/913 (32%), Positives = 428/913 (46%), Gaps = 165/913 (18%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 41  WFKQWKKYVGFD----SWDMYNVGEH--------NLFPGPIDNSGLFSDPESQ------T 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 83  LKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 142

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T
Sbjct: 143 CENSDPTNVLSC-HFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNT 201

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS 234
           + DA +   Q +++E   N +GT  + ++Q NG                      G+SAS
Sbjct: 202 VQDAGLYQGQVLVIEP-QNEDGTWPRQTLQSNG---------------------SGFSAS 239

Query: 235 KGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCL 294
                + SS I                            GL GL NLGNTCFMNSA+QCL
Sbjct: 240 YNCQESPSSHIQP--------------------------GLCGLGNLGNTCFMNSALQCL 273

Query: 295 VHTPEFARYF-REDYRREINWQNPLGMV-------------------------------- 321
            +T     YF +++Y  EIN  NPLGM                                 
Sbjct: 274 SNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFKTQVG 333

Query: 322 ---------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHI 366
                          ELLAFLLDGLHEDLNRVK KPY++ KDA+GRPD  VA E W NH 
Sbjct: 334 RFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHR 393

Query: 367 ARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSA 426
            RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL     R M V +  +D   
Sbjct: 394 LRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEVFLVPADPRC 453

Query: 427 LPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTI 484
            P+ Y V VP  G   DL + L  +  +  +E + V ++ NH   +   +D+    L+ I
Sbjct: 454 RPTQYRVIVPLMGAVSDLCEALSRLSGIA-AENMVVTDVYNHRFHKIFQMDE---GLNHI 509

Query: 485 KDDDHLAAYRVPKL---VKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDV 541
              D +  Y          + V L +  R  E++   + T+S    YG PL+ S+ R  +
Sbjct: 510 MPRDDIFVYETCSTSSDSSECVTLPVYFR--ERKSRTSSTSSGAVLYGQPLLISVPRHKL 567

Query: 542 ISSGKIQSTVQRM----------------LSPFLKKESLMHADSFDPSSMVTTVDPSGEA 585
                 ++  +R+                L P     S    +  D   M       G+ 
Sbjct: 568 TFESLYEAVCERISRYIKQPLPDESGGLPLEPGACNGSRGSCEGDDEEEMEHQE--EGKE 625

Query: 586 HSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDL----------SVEGD-KTIRIP 634
           H + +    +++  S  + T   +  Q   +    F L          S+  D K +++ 
Sbjct: 626 HLSETEGSGEDELGSEHSETTQKIKGQPCPKRLFTFSLVNSYGTADINSLAADGKLLKLN 685

Query: 635 SSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEP 694
           S ST   + +DW  +    Y         E   +    +K +   ++L  C+E F   E 
Sbjct: 686 SRST---LAIDWDSETRSLYYDEQESEAYEKHVSMLQPQKKKKMAVALRDCIELFTTMET 742

Query: 695 LVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFN 754
           L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + KL+T V FP+   N
Sbjct: 743 LGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPVRGLN 802

Query: 755 LTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDD 814
           ++++V +  S+R  +Y+L A++NHYG MG GHYTA+ K     +WY FDDS++S  +E+ 
Sbjct: 803 MSEFVCDL-SARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEEQ 861

Query: 815 VKSAAAYVLFYRR 827
           + + AAYVLFY+R
Sbjct: 862 IVTKAAYVLFYQR 874


>gi|345328594|ref|XP_001505377.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Ornithorhynchus
           anatinus]
          Length = 974

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 305/921 (33%), Positives = 441/921 (47%), Gaps = 129/921 (14%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G   L             P  IDNS L +D   +       
Sbjct: 49  WFKQWKKYVGYDSWDMYHVGEQNL------------YPGPIDNSGLFSDPENQI------ 90

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + D L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 91  LKDHLIDELDYVLVPAEAWNKLVNWYGCIEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 150

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYL-NLEQICIWDYYGHRKHALMNDMDRT 174
                P    S  + SK +TI  + +    +F + + ++  +W+ Y    +  +N  D T
Sbjct: 151 CQNSDPTNLLSC-QFSKADTIATIEKEMRRLFNIPDDKETRLWNKYMSNTYEQLNKPDNT 209

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSS-LSIAGGWSA 233
           + DA +   Q +++E L N +GT  + +IQ         +     P   +  S       
Sbjct: 210 IQDAGLYQGQVLVIE-LQNEDGTWPRQTIQSKSSTTTSKNLTTTSPKSPTTYSPESTPPI 268

Query: 234 SKGTSRNHSSEISTSPNLASA--RDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAI 291
           + G S   S  +S+S +   +   +S N L S   T      GL GL NLGNTCFMNSA+
Sbjct: 269 TNGDSIKPSGVVSSSLSRGGSDFSNSYNCLDSGPHT----HPGLCGLGNLGNTCFMNSAL 324

Query: 292 QCLVHTPEFARYFRED-YRREINWQNPLGMV----------------------------- 321
           QCL +      YF  D Y  EIN  NPLGM                              
Sbjct: 325 QCLSNIAPLTEYFLNDKYEAEINRDNPLGMKGEIAEAFAQLIKQMWSGRNAQVVPRMFKT 384

Query: 322 ------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWA 363
                             ELLAFLLDGLHEDLNRVK KPY++ +DA+GRPD  VA E W 
Sbjct: 385 QVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELQDANGRPDLVVAKEAWD 444

Query: 364 NHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSD 423
           NH  RNDS+IVD   G +KSTLVCP C+K+SVTFDPF YL+LPL     RTM + + ++D
Sbjct: 445 NHRLRNDSVIVDTFHGLFKSTLVCPQCSKISVTFDPFCYLTLPLPLKKDRTMEIFLVSAD 504

Query: 424 GSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLST 483
               P+ Y VTVP  G   DL + L  +  +   E + V ++ NH   +        L+ 
Sbjct: 505 PHCRPTQYRVTVPMMGSVSDLCRSLSKLSGVA-IENMLVTDVYNHRFHKIFQMS-DGLNH 562

Query: 484 IKDDDHLAAYRVPKLVKKAV-FLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVI 542
           I   D +  Y V    +     +      +E++   A T+S    YG PL+ S  +  + 
Sbjct: 563 IMPRDDIFVYEVFSSTEDGFECVTFPVYFREKKNRQANTSSGTILYGQPLIISAPKHKLT 622

Query: 543 SSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSG-----EAHSNSSSNIAKED 597
                Q   +R +S ++K   LM   S  P +  T    SG     +       N  +E 
Sbjct: 623 HDYLYQIICER-ISRYIKY-PLMEDSSSHPMASGTCNGSSGTFEGKDLEEMEHQNEDREP 680

Query: 598 ASSSKAVT--------LPNLPL---------QLVDESNVCFDL----------SVEGD-K 629
            +S+   +        L N P          Q+  +    F L          S+  D K
Sbjct: 681 PTSTVTCSFEGRVEEKLGNDPSRYISKKITGQMYKKKLFSFSLVNSYGTTDISSLAADGK 740

Query: 630 TIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF-KNGPV--TKKARTEPLSLYTCL 686
            +++ S ST   V VDW     E  + ++ E   E + K+G +   +K +  P++L  C+
Sbjct: 741 LLKLNSRST---VAVDWDS---ETRSLYYDEQESEAYEKDGSMLQPQKKKKAPVALRDCI 794

Query: 687 EAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFV 746
             F   E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + KL+T V
Sbjct: 795 GLFTTMETLGEHDPWYCPYCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTQV 854

Query: 747 NFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSH 806
           +FPI +  +++++ +  ++   +Y+L A++NHYG MG GHYTA+ K     +WY FDDS+
Sbjct: 855 DFPIRNLCMSEFICDP-AAGPYIYDLIAVSNHYGAMGVGHYTAYAKNRLNGKWYYFDDSN 913

Query: 807 ISPINEDDVKSAAAYVLFYRR 827
           +S  +ED + + AAYVLFY+R
Sbjct: 914 VSLASEDQIVTKAAYVLFYQR 934


>gi|5669678|gb|AAD46422.1|AF105715_1 ubiquitous nuclear protein [Gallus gallus]
          Length = 950

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 312/935 (33%), Positives = 433/935 (46%), Gaps = 179/935 (19%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D      G    
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKD------GDSQS 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNRLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPGEKETRLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E   N +GT  + S   N               K+S      ++A K
Sbjct: 199 QDAGLYQGQVLVIEQ-KNEDGTWPRGSSTPN--------------VKNSNYCLPSYTAYK 243

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
               +     +  P                        GL GL NLGNTCFMNSAIQCL 
Sbjct: 244 NYDYSEPGRHNEQP------------------------GLCGLSNLGNTCFMNSAIQCLS 279

Query: 296 HTPEFARYFRED-YRREINWQNPLGM---------------------------------- 320
           +TP    YF  D Y+ E+N+ NPLGM                                  
Sbjct: 280 NTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKYSYVTPRAFKTQVGR 339

Query: 321 -------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ VA+E W NH+ 
Sbjct: 340 FAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLK 399

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+  +    D  A 
Sbjct: 400 RNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEESEM--DPLAK 457

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTIK 485
           P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R   +D+   +LS+I 
Sbjct: 458 PMQYKVVVPKIGNILDLCTALSALSGVA-ADKMIVTDIYNHRFHRIFAMDE---NLSSIM 513

Query: 486 DDDHLAAYRVPKLVKKAVFLQLIHR-LQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISS 544
           + D +  + +     +     +I   L+E+    + + S    +G P + ++ R++  + 
Sbjct: 514 ERDDIYVFEIAINTTEDTEQVIIPVCLREKCRHTSYSHSGSSLFGQPFLIAVPRNN--TE 571

Query: 545 GKIQSTVQRMLSPFLK---------------KE-----------------SLMHADSFDP 572
            K+ + +   +  ++K               KE                 S M  D  D 
Sbjct: 572 DKLYNLLLLRMCRYVKTCTETDDSEGSLRCCKEHGINGNGPNGIHEEGSPSEMETDEQDD 631

Query: 573 SSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVT---LPNLPLQLVDESNVCFDLSVEGDK 629
            S      PS   +S S  ++  ++ S +   T       PL    +    F  +  G+ 
Sbjct: 632 ESSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTCKGQPLTGHKKRLFTFQFNNLGNT 691

Query: 630 TI--------------RIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF-KNGPVTKK 674
            I              R P       + +DW  +L ++Y   F ++  E F K+  V  K
Sbjct: 692 DINCIKDDTRHIRFDDRQPKLDERSFLALDWDPELKKRY---FDDSAAEDFEKHESVEYK 748

Query: 675 ARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFS 733
              +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VLV+HLKRFS
Sbjct: 749 PPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFS 808

Query: 734 YSRSMKHKLETFVNFPIHDFNLT-KYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIK 792
           YSR M+ KL+T V FPI+D +++  Y  N    R   Y L A++NHYGGMG GHYTA +K
Sbjct: 809 YSRYMRDKLDTLVGFPINDLDMSIPYNPNAGPCR---YNLIAVSNHYGGMGGGHYTAFVK 865

Query: 793 LLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             D+ +WY FDDS +S   ED + S AAYVLFY+R
Sbjct: 866 NKDDGKWYYFDDSSVSIACEDQIVSKAAYVLFYQR 900


>gi|343961659|dbj|BAK62419.1| ubiquitin carboxyl-terminal hydrolase 4 [Pan troglodytes]
          Length = 907

 Score =  394 bits (1012), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 300/886 (33%), Positives = 428/886 (48%), Gaps = 126/886 (14%)

Query: 38  PSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLAR 94
           P  IDN  L +D  ++       + + L++  DY+L+P E WN+L +WYG   G   + R
Sbjct: 11  PGPIDNPGLFSDPESQ------TLKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVR 64

Query: 95  KVISSGLSQTELAVEVYPLRLQLLVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE 152
           KV+  GL      VEVY L L+      P    S    SK +TI  + +    +F +  E
Sbjct: 65  KVVEHGLFVKHCKVEVYLLELKPCENSDPTNVLS-CHFSKADTIATIEKEMRKLFNIPAE 123

Query: 153 -QICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQ------- 204
            +  +W+ Y    +  ++ +D T+ DA +   Q +++E   N +GT  + ++Q       
Sbjct: 124 RETRLWNKYMSNTYEQLSKLDNTVQDAGLYQGQVLVIEP-QNEDGTWPRQTLQSKSSTAP 182

Query: 205 DNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSS 264
           +  F     SS     S S+  IA G S S  T   HSS +S   +  SA  +     SS
Sbjct: 183 NRNFTTSPKSSASPYSSVSASLIANGDSTS--TCGMHSSGVSRGGSGFSASYNCQEPPSS 240

Query: 265 GVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV-- 321
            +       GL GL NLGNTCFMNSA+QCL +T     YF +++Y  EIN  NPLGM   
Sbjct: 241 HIQP-----GLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGE 295

Query: 322 ---------------------------------------------ELLAFLLDGLHEDLN 336
                                                        ELLAFLLDGLHEDLN
Sbjct: 296 IAEAYAELIKQMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLN 355

Query: 337 RVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVT 396
           RVK KPY++ KDA+GRPD  VA E W NH  RNDS+IVD   G +KSTLVCP C KVSVT
Sbjct: 356 RVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVT 415

Query: 397 FDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQ 456
           FDPF YL+LPL     R M V +  +D    P+ Y VTVP  G   DL + L  +  +  
Sbjct: 416 FDPFCYLTLPLPLKKDRVMEVFLVPADPHCRPTQYRVTVPLMGAVSDLCEALSRLSGIA- 474

Query: 457 SEELKVAEIQNHSIQRF--LDDPLISLSTIKDDDHLAAYRVPKL-VKKAVFLQLIHRLQE 513
           +E + VA++ NH   +   +D+    L+ I   D +  Y V    V  +  + L    +E
Sbjct: 475 AENMVVADVYNHRFHKIFQMDE---GLNHIMPRDDIFVYEVCSTSVDGSECVTLPVYFRE 531

Query: 514 QEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPS 573
           ++   + T+S    Y  PL+ S+ +  +      Q+   R +S ++K+      D F  S
Sbjct: 532 RKSRPSSTSSASALYEQPLLLSVPKHKLTLESLYQAVCDR-ISRYVKQPL---PDEFGSS 587

Query: 574 SM-----------------------------VTTVDPSGEAHSNSSSNIAKEDASSSKAV 604
            +                             ++  + SGE   +   N   E     K  
Sbjct: 588 PLEPGACNGSRNSCEGEDEEEMEHQEEGKEQLSETEGSGE---DEPGNDPSETTQKIKGQ 644

Query: 605 TLPN--LPLQLVDESNVCFDLSVEGD-KTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLEN 661
             P       LV+        S+  D K +++ S ST   + +DW  +    Y       
Sbjct: 645 PCPKRLFTFSLVNSYGTADINSLAADGKLLKLNSRST---LAMDWDSEARRLYYDEQESE 701

Query: 662 LLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRL 721
             E   +    +K +   ++L  C+E F   E L   D WYCP CK+ +QA+KK DLW L
Sbjct: 702 AYEKHVSMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSL 761

Query: 722 PEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGG 781
           P++LV+HLKRFSY+R  + KL+T V FPI   N++++V N  S+R  +Y+L A++NHYG 
Sbjct: 762 PKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNL-SARPYVYDLIAVSNHYGA 820

Query: 782 MGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           MG GHYTA+ K     +WY FDDS++S  +ED + + AAYVLFY+R
Sbjct: 821 MGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQR 866


>gi|194221320|ref|XP_001498012.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 isoform 1 [Equus
           caballus]
          Length = 963

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 303/920 (32%), Positives = 440/920 (47%), Gaps = 132/920 (14%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 41  WFKQWKKYVGFD----SWDMYNVGEH--------NLFPGPIDNSGLFSDPESQ------T 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 83  LKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 142

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T
Sbjct: 143 CENSDPTNVLS-CHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNT 201

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNG-------FAEKKASSVLVEPSKSSLSI 227
           + DA +   Q +++E   N +GT  + ++Q          F     SS     S S+  I
Sbjct: 202 VQDAGLYQGQVLVIEP-QNEDGTWPRQTLQSKSSTVPSRNFTTSPKSSASPYSSVSASPI 260

Query: 228 AGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFM 287
           A G   S  TS   SS +S   +  SA  +     SS +       GL GL NLGNTCFM
Sbjct: 261 ANG--DSTNTSGMRSSGVSRGGSGFSASYNCQESPSSHIQP-----GLCGLGNLGNTCFM 313

Query: 288 NSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------------------------- 321
           NSA+QCL +T     YF +++Y  EIN  NPLGM                          
Sbjct: 314 NSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPR 373

Query: 322 ----------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVAD 359
                                 ELLAFLLDGLHEDLNRVK KPY++ KDA+GRPD  VA 
Sbjct: 374 MFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAK 433

Query: 360 EYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTV 419
           E W NH  RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL     R M V +
Sbjct: 434 EAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEVFL 493

Query: 420 FTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDP 477
             +D    P+ Y V VP  G   DL + L  +  +  +E + V ++ NH   +   +D+ 
Sbjct: 494 VPADPRCRPTQYRVIVPLMGAVSDLCEALSRLSGIA-AENMVVTDVYNHRFHKIFQMDE- 551

Query: 478 LISLSTIKDDDHLAAYRVPKL---VKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVS 534
              L+ I   D +  Y          + V L +  R  E++   + T+S    YG PL+ 
Sbjct: 552 --GLNHIMPRDDIFVYETCSTSSDSSECVTLPVYFR--ERKSRTSSTSSGAVLYGQPLLI 607

Query: 535 SISRDDVISSGKIQSTVQRM----------------LSPFLKKESLMHADSFDPSSMVTT 578
           S+ R  +      ++  +R+                L P     S    +  D   M   
Sbjct: 608 SVPRHKLTFESLYEAVCERISRYIKQPLPDESGGLPLEPGACNGSRGSCEGDDEEEMEHQ 667

Query: 579 VDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDL----------SVEGD 628
               G+ H + +    +++  S  + T   +  Q   +    F L          S+  D
Sbjct: 668 E--EGKEHLSETEGSGEDELGSEHSETTQKIKGQPCPKRLFTFSLVNSYGTADINSLAAD 725

Query: 629 -KTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLE 687
            K +++ S ST   + +DW  +    Y         E   +    +K +   ++L  C+E
Sbjct: 726 GKLLKLNSRST---LAIDWDSETRSLYYDEQESEAYEKHVSMLQPQKKKKMAVALRDCIE 782

Query: 688 AFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVN 747
            F   E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + KL+T V 
Sbjct: 783 LFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVE 842

Query: 748 FPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHI 807
           FP+   N++++V +  S+R  +Y+L A++NHYG MG GHYTA+ K     +WY FDDS++
Sbjct: 843 FPVRGLNMSEFVCDL-SARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNV 901

Query: 808 SPINEDDVKSAAAYVLFYRR 827
           S  +E+ + + AAYVLFY+R
Sbjct: 902 SLASEEQIVTKAAYVLFYQR 921


>gi|260822380|ref|XP_002606580.1| hypothetical protein BRAFLDRAFT_131969 [Branchiostoma floridae]
 gi|229291923|gb|EEN62590.1| hypothetical protein BRAFLDRAFT_131969 [Branchiostoma floridae]
          Length = 911

 Score =  390 bits (1003), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 292/906 (32%), Positives = 418/906 (46%), Gaps = 162/906 (17%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +  G G              +  P  IDN+ L  +    D      
Sbjct: 38  WFKQWKKYVGYDSWDMYGMGDQ------------ATFPGPIDNAALYKEPQTPD---CRH 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+LLP E W++L SWYG   G   ++RKV+  G+      VEVY + L+L
Sbjct: 83  LKEHLIDELDYMLLPTEAWDKLVSWYGMVNGQQPISRKVVEHGMFVKHCKVEVYLMELKL 142

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYL-NLEQICIWDYYGHRKHALMNDMDRTL 175
                   C + + SK +TI  + +    +F + + ++  +W+ Y    +  +N  + T+
Sbjct: 143 CQNDNLDNCVSQQFSKADTIDYIEKEMRKLFEIGDDKETRVWNKYMSNTYEHLNKPENTV 202

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q ILV    N +GT  + ++                              +K
Sbjct: 203 QDAGLYQGQ-ILVIEQQNEDGTWPRGNV-----------------------------TNK 232

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRG-ASVGLTGLLNLGNTCFMNSAIQCL 294
            +S   + E+ T    A+     +T   S    RG    GL GL NLGNTCFMNSA+QCL
Sbjct: 233 SSSSARNMEMGTYSAPATRSSYSSTYDYSSERGRGQVQPGLCGLSNLGNTCFMNSALQCL 292

Query: 295 VHTPEFARYFRED-YRREINWQNPLGMV-------------------------------- 321
            + P   RYF E+ Y+ E+N  NPLGM                                 
Sbjct: 293 SNVPVLTRYFLENHYQEELNSDNPLGMKGEIAKTYAELIKQIWSGKYSYTIPRNFKTAVG 352

Query: 322 ---------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHI 366
                          ELLAFLLDGLHEDLNR++ KPY++ +DADGRPDEEVADE W NH 
Sbjct: 353 RFAPQFSGYQQQDSHELLAFLLDGLHEDLNRIRKKPYVELRDADGRPDEEVADEAWKNHR 412

Query: 367 ARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSA 426
            RNDSIIVD   G +KSTLVCP C+K+S+TFDPF YLSLPL     R + V +   D +A
Sbjct: 413 LRNDSIIVDTFHGLFKSTLVCPECSKISITFDPFCYLSLPLPIKKERFIEVVLIRMDPAA 472

Query: 427 LPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKD 486
            P    VT                             ++ NH   +    P   LS I D
Sbjct: 473 KPMQMVVT-----------------------------DVYNHRFHKVF-APDEGLSHILD 502

Query: 487 DDHLAAYRV-------PKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRD 539
            D +  Y V       P  +   V+++   R   Q P           +GTPL+  I R 
Sbjct: 503 RDDIYVYEVPVNTCDDPDTLILPVYMR--ERKVRQNPSYNYNNVSTVLFGTPLLVPIPRK 560

Query: 540 DVISSGKIQSTVQRMLSPFLKKES------------LMHADSFDPSSMVTTVDPSGEAHS 587
           +       +  +Q+M     + ES            +      D       +D   E+  
Sbjct: 561 NTTYEDLYRIMLQKMSRYIQEPESGDEWYGEEIKNCVKDGVIGDDDMKNDNIDGEAESEE 620

Query: 588 NSSSN--IAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVE------GDKTIRIPSSSTS 639
           +S  N  +  +++ S   V   N P ++     V    S E       D+ I+  + S  
Sbjct: 621 DSQVNDSLMNDNSMSDDEVNCDNRPHRMFTFHLVNSYGSAEIEHIRDDDRPIKFTNRS-- 678

Query: 640 IVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPED 699
             + +DW  K  EKY        L+V +    T   + + +SL  C++ FL +E L  +D
Sbjct: 679 -YLALDWDPKAKEKYYDEKQAEELDVDETVNATPMRKRQVISLKDCIQLFLVKEKLGADD 737

Query: 700 MWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYV 759
            WYCP CK+ +QA+KK DLW LP++LVIHLKRFSY+R  + KL+T V FP  D ++++++
Sbjct: 738 PWYCPSCKKHQQATKKFDLWSLPKILVIHLKRFSYNRYWRDKLDTMVEFPTRDLDMSEFI 797

Query: 760 ANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAA 819
            N +      Y+L  ++NHYGGMG GHYTA+ K  ++ +WY FDDS +SP +ED   S A
Sbjct: 798 IN-DGHGYATYDLIGVSNHYGGMGGGHYTAYGKSREDTQWYYFDDSSVSPASEDQCVSKA 856

Query: 820 AYVLFY 825
           AYVLFY
Sbjct: 857 AYVLFY 862


>gi|344243312|gb|EGV99415.1| Ubiquitin carboxyl-terminal hydrolase 15 [Cricetulus griseus]
          Length = 870

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 294/891 (32%), Positives = 415/891 (46%), Gaps = 178/891 (19%)

Query: 38  PSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLAR 94
           P  IDNS L+ D  A+       + + L++  DYILLP E WN+L SWY    G   +AR
Sbjct: 8   PGPIDNSGLLKDGDAQ------SLKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIAR 61

Query: 95  KVISSGLSQTELAVEVYPLRLQLLVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE- 152
           KV+  G+      VEVY   L+L          T R SK +TI  + +    IF +  E 
Sbjct: 62  KVVEQGMFVKHCKVEVYLTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEK 121

Query: 153 QICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKK 212
           +  +W+ Y       +N  D T+ DA +   Q +++E               ++G   + 
Sbjct: 122 ETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIE------------QKNEDGTWPRG 169

Query: 213 ASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGAS 272
            S+  V+ S   L     ++A K    +     +  P                       
Sbjct: 170 PSAPNVKNSNYCLP---SYTAYKNYDYSEPGRNNEQP----------------------- 203

Query: 273 VGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM----------- 320
            GL GL NLGNTCFMNSAIQCL +TP    YF  D Y+ E+N+ NPLGM           
Sbjct: 204 -GLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAEL 262

Query: 321 ------------------------------------VELLAFLLDGLHEDLNRVKHKPYI 344
                                                ELLAFLLDGLHEDLNR++ KPYI
Sbjct: 263 IKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYI 322

Query: 345 KSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLS 404
           + KDADGRPD+ VA+E W NH+ RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+
Sbjct: 323 QLKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLT 382

Query: 405 LPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAE 464
           LPL     R++ V +   D    P    VT   + R   +  +  N+ S+ + +++ V E
Sbjct: 383 LPLPMKKERSLEVYLVRMDPLIKPMQMIVTDIYNHRFHRIFAMDENLSSIMERDDIYVFE 442

Query: 465 IQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQ 524
           I              +++  +D +H+    +P  +++    +  H       G++     
Sbjct: 443 I--------------NINRTEDTEHVV---IPVCLRE----KFRHSSYTHHTGSS----- 476

Query: 525 WKAYGTPLVSSISRDD------------VISSGKIQSTVQRMLSPFLKKE---------- 562
              +G P + ++ R++            +    K+ +  +    P    E          
Sbjct: 477 --LFGQPFLMAVPRNNTEDKLYNLLLLRMCRYVKMSTETEETDGPLRCCEDQNINGNGPN 534

Query: 563 --------SLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLV 614
                   S M  D  D  S      PS   +S S  ++  ++ S +   T      QL 
Sbjct: 535 GIHEEGSPSEMETDEPDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEETCKGQLT 594

Query: 615 DESNVCF----------DLSVEGDKTIRIPSSSTSI------VVYVDWSQKLLEKYNTHF 658
                 F          D++   D T  I      +       + +DW   L ++Y   F
Sbjct: 595 GHRKRLFTFQFINLGNTDINYIKDDTRHIRFDDRQLRLDERSFLALDWDPDLKKRY---F 651

Query: 659 LENLLEVF-KNGPVTKKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKL 716
            EN  E F K+  V  K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKL
Sbjct: 652 DENAAEDFEKHESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKL 711

Query: 717 DLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALT 776
           DLW LP VLV+HLKRFSYSR M+ KL+T V+FPI+D ++++++ N N+    LY L A++
Sbjct: 712 DLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAG-PCLYNLIAVS 770

Query: 777 NHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           NHYGGMG GHYTA  K  D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 771 NHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 821


>gi|301614079|ref|XP_002936516.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4-like isoform 2
           [Xenopus (Silurana) tropicalis]
          Length = 933

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 302/929 (32%), Positives = 434/929 (46%), Gaps = 196/929 (21%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G S L             P  +DNS L  D   +       
Sbjct: 63  WFKQWKKYVGFDAWDMYNVGESSL------------YPGPVDNSGLFADHDTQ------V 104

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E W +L +WYG   G   + RKV+  GL      VEVY + L+L
Sbjct: 105 LKEHLIDELDYVLVPTEAWKKLMNWYGSVEGQHPIVRKVVEHGLFVKNCKVEVYLIELKL 164

Query: 118 LVMPRGECSTIR-ISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                 E    R  SK +TI  + +   +IF ++ + +  +W+ Y          M  T 
Sbjct: 165 CDDSDPENVIARHFSKADTIDTIEKEMRNIFNISADKETRLWNRY----------MTNTY 214

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
           +                    T  +S++QD G  +     +++E   +     G W    
Sbjct: 215 EQL------------------TKKESTVQDAGLYQ--GQMIVIEQRNAD----GTWPR-- 248

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASV-----------GLTGLLNLGNT 284
                                   TL SSGV    +             GL GL NLGNT
Sbjct: 249 -----------------------QTLNSSGVGYTSSYSSYSYREPSSQPGLCGLSNLGNT 285

Query: 285 CFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV---------------------- 321
           CFMNSA+QCL +TP   RYF  D Y++EIN +NPLGM                       
Sbjct: 286 CFMNSALQCLSNTPPLTRYFVTDEYKKEINRENPLGMKGEIAVAYAELIRQIWSGEHSYV 345

Query: 322 -------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEE 356
                                    ELLAFLLDGLHEDLNRVK KPY++ KDA+GRPD  
Sbjct: 346 APRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDSV 405

Query: 357 VADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMT 416
           VA E W NH+ RN+SIIVD+  G +KSTLVCP C+KVSVTFDPF YL+LPL     RTM 
Sbjct: 406 VAAEAWENHLRRNNSIIVDIFHGLFKSTLVCPECSKVSVTFDPFCYLTLPLPMKKDRTME 465

Query: 417 VTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLD 475
           V    SD    P  Y VTVPK G   DL   L  +  +  +E + V ++ NH   + F  
Sbjct: 466 VFFVRSDPHCKPKQYRVTVPKMGVVSDLCSALSKLSEVP-AENMVVTDVYNHRFHKIFQM 524

Query: 476 DPLISLSTIKDDDHLAAYRV-PKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVS 534
           D +  LS I + D +  Y V P+  ++ V L +  R +      +  T     +G P++ 
Sbjct: 525 DEM--LSHIMERDDIFVYEVKPRKAEEWVTLPICFRERRYRQATSTGTV---LFGQPIMI 579

Query: 535 SISRD----DVISSGKIQSTVQRMLSPFLKKESL-------------MHADSFDPSSMVT 577
           S+ +     DV+    ++   + + +P  +  S              ++ D  D      
Sbjct: 580 SVPKHNLTLDVLYEIVLERIQRYVKNPHPESYSCSSTDSGACNGSNGIYDDEMDHQEEDA 639

Query: 578 TVDPSGEAHSNSSSNIAKEDASSSKAVTLPN-LPLQLVDESNVCFDLS-VEGDKTIRIPS 635
                 +  +N  S+ + E+ +S    +  N +P + +   N  F  S V    T  + S
Sbjct: 640 DDQEESQEETNGQSDESVEEENSEGGCSPCNKMPKKALVCRNRLFAFSLVNSYATADVGS 699

Query: 636 S--------STSIVVYVDW---SQKLL------EKYNTHFLENLLEVFKNGPVTKKARTE 678
                    S+   V +DW   S+KL       E ++ H  E++ +     P  KK    
Sbjct: 700 MPAKGYLKLSSFATVAIDWDSESKKLFYDDQEAEAFDKH--ESMTQ-----PQKKKVT-- 750

Query: 679 PLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM 738
            ++L  C++ F + E L   D WYCP CK+ ++A+KK DLW LP++LV+HLKRFSY+R  
Sbjct: 751 -VALRECIQLFTKTETLGEHDPWYCPHCKKHQRATKKFDLWSLPKILVVHLKRFSYNRFW 809

Query: 739 KHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR 798
           + KL+  V FPI D N++ +V +  +    +Y+L A++NHYGGMG GHYTA+ K  D+ +
Sbjct: 810 RDKLDAVVEFPIRDLNMSDFVCDPQAG-PYVYDLVAVSNHYGGMGGGHYTAYAKNQDKGQ 868

Query: 799 WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           WY FDDS +SP +ED + + AAYVLFY+R
Sbjct: 869 WYYFDDSSVSPASEDQIVTKAAYVLFYQR 897


>gi|119585372|gb|EAW64968.1| ubiquitin specific peptidase 4 (proto-oncogene), isoform CRA_a
           [Homo sapiens]
          Length = 819

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 280/847 (33%), Positives = 408/847 (48%), Gaps = 136/847 (16%)

Query: 38  PSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLAR 94
           P  IDNS L +D  ++       + + L++  DY+L+P E WN+L +WYG   G   + R
Sbjct: 11  PGPIDNSGLFSDPESQ------TLKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVR 64

Query: 95  KVISSGLSQTELAVEVYPLRLQLLVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE 152
           KV+  GL      VEVY L L+L     P    S    SK +TI  + +    +F +  E
Sbjct: 65  KVVEHGLFVKHCKVEVYLLELKLCENSDPTNVLS-CHFSKADTIATIEKEMRKLFNIPAE 123

Query: 153 -QICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEK 211
            +  +W+ Y    +  ++ +D T+ DA +   Q +++E   N +GT  + ++Q NG    
Sbjct: 124 RETRLWNKYMSNTYEQLSKLDNTVQDAGLYQGQVLVIEP-QNEDGTWPRQTLQSNG---- 178

Query: 212 KASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGA 271
                             G+SAS       SS I                          
Sbjct: 179 -----------------SGFSASYNCQEPPSSHIQP------------------------ 197

Query: 272 SVGLTGLLNLGNTCFMNSAIQCL-----VHT-------------PEFARYFREDYRREIN 313
             GL GL NLGNTCFMNSA+Q +      H              P+F+ Y ++D +    
Sbjct: 198 --GLCGLGNLGNTCFMNSALQQMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQ---- 251

Query: 314 WQNPLGMVELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSII 373
                   ELLAFLLDGLHEDLNRVK KPY++ KDA+GRPD  VA E W NH  RNDS+I
Sbjct: 252 --------ELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVI 303

Query: 374 VDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTV 433
           VD   G +KSTLVCP C KVSVTFDPF YL+LPL     R M V +  +D    P+ Y V
Sbjct: 304 VDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEVFLVPADPHCRPTQYRV 363

Query: 434 TVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTIKDDDHLA 491
           TVP  G   DL + L  +  +  +E + VA++ NH   +   +D+    L+ I   D + 
Sbjct: 364 TVPLMGAVSDLCEALSRLSGIA-AENMVVADVYNHRFHKIFQMDE---GLNHIMPRDDIF 419

Query: 492 AYRVPKL-VKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQST 550
            Y V    V  +  + L    +E++   + T+S    YG PL+ S+ +  +      Q+ 
Sbjct: 420 VYEVCSTSVDGSECVTLPVYFRERKSRPSSTSSASALYGQPLLLSVPKHKLTLESLYQAV 479

Query: 551 VQRMLSPFLKKESLMHADSFDPSSM-----------------------------VTTVDP 581
             R +S ++K+      D F  S +                             ++  + 
Sbjct: 480 CDR-ISRYVKQPL---PDEFGSSPLEPGACNGSRNSCEGEDEEEMEHQEEGKEQLSETEG 535

Query: 582 SGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGD-KTIRIPSSSTSI 640
           SGE    +  +   +     +          LV+        S+  D K +++ S ST  
Sbjct: 536 SGEDEPGNDPSETTQKKIKGQPCPKRLFTFSLVNSYGTADINSLAADGKLLKLNSRST-- 593

Query: 641 VVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
            + +DW  +    Y         E   +    +K +   ++L  C+E F   E L   D 
Sbjct: 594 -LAMDWDSETRRLYYDEQESEAYEKHVSMLQPQKKKKTTVALRDCIELFTTMETLGEHDP 652

Query: 701 WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
           WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + KL+T V FPI   N++++V 
Sbjct: 653 WYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVC 712

Query: 761 NKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAA 820
           N  S+R  +Y+L A++NHYG MG GHYTA+ K     +WY FDDS++S  +ED + + AA
Sbjct: 713 NL-SARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAA 771

Query: 821 YVLFYRR 827
           YVLFY+R
Sbjct: 772 YVLFYQR 778


>gi|308799161|ref|XP_003074361.1| putative queuine tRNA-ribosyltransferase (ISS) [Ostreococcus tauri]
 gi|116000532|emb|CAL50212.1| putative queuine tRNA-ribosyltransferase (ISS) [Ostreococcus tauri]
          Length = 2214

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 282/849 (33%), Positives = 415/849 (48%), Gaps = 131/849 (15%)

Query: 65   LLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPL--RLQLLV 119
            L EG D+ ++          WYG   G  ++ R  +        L V+VY +  R +L  
Sbjct: 493  LREGEDFEIVRASAMEAFERWYGHAEGSRSIYRTCVER---NGRLVVDVYGIVVRAKLGE 549

Query: 120  MPRGECSTIRISKKETIGELHRRACSIFYLNLEQ-----ICIWDY-YGHRKHALMNDMDR 173
             P      + + K     EL   AC   +  L +     I + DY + +R   L N   +
Sbjct: 550  APDEVTRRLELPKGSEAREL-VLACKAAFEELREVDEDDIRVSDYLFQNRGEVLTNLPKK 608

Query: 174  TLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSA 233
            +L+D ++  DQ++LVE       T       D+G      +SV+  P+            
Sbjct: 609  SLEDFHLLPDQEVLVE-------TKADDRWPDDG------NSVIALPA-----------V 644

Query: 234  SKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQC 293
            S   S +H+ ++    +L    D      ++ V TRG +    GL NLGNTCFMNSA+QC
Sbjct: 645  SDDDSMDHT-KLGCDVSLTPKNDVSTCADAAMVGTRGKA----GLSNLGNTCFMNSALQC 699

Query: 294  LVHTPEFARYFRED-YRREINWQNPLGM-------------------------------- 320
            L H+     YF  D Y  +IN  NP+GM                                
Sbjct: 700  LSHSSLLTDYFLSDKYEGDINTDNPIGMGGELAKEYANLIGALWRDGALTVTPRKFKHSL 759

Query: 321  ---------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANH 365
                            ELLAFLLDGLHEDLNRVK KPY++ +DADGR DE+VA E W  H
Sbjct: 760  ARFAPQFSGYMQQDAQELLAFLLDGLHEDLNRVKRKPYVEERDADGRTDEDVAHESWEAH 819

Query: 366  IARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGS 425
            +ARNDS IVD  QGQY+STLVCP C+  SV FDPFMYLS+P+ +   R + VT+ +    
Sbjct: 820  LARNDSCIVDTFQGQYRSTLVCPSCSNKSVKFDPFMYLSIPVPSVGERVIKVTLISYGDE 879

Query: 426  ALPSTYTVTVPKHGRCRDLIQVLGNICSL-KQSEELKVAEIQNHSIQRFLDDPLISLSTI 484
                TY + +PK G    L   L  +  +    E L + E+ NH +++ L +  + LS I
Sbjct: 880  ISAVTYALKLPKLGELATLFSALCEVADVDTMDERLVLCEVYNHRLEKTLSNMTMPLSDI 939

Query: 485  KDDDHLAAYRVPKL----VKKAVFLQLIHRL-----QEQEP---GAAQTTSQWKAYGTPL 532
            ++ D + A+R+P L    V + +   L+ R      Q + P    +   TS    +G P 
Sbjct: 940  RERDTIFAHRLPVLNDDEVSETIDTVLVQRKHQNASQNKTPYSHASPLATSTLVRFGFPW 999

Query: 533  VSSISRDDVISSGKIQSTVQ-RMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSS 591
            +  ++    +  GK     Q R +   ++K S  +A +      +    PS  + S   S
Sbjct: 1000 IVPVT----VPKGKKPGAEQARRIESIVEKYSAKYART------IAMEQPSSPSASGDGS 1049

Query: 592  NIAKEDASSSKAVTLPNLPLQLVDES-NVCFDLSVEGDKT-----IRIPSSSTSIVVYVD 645
              +     ++    L    L+  ++S +  F     GD       +     +T   V +D
Sbjct: 1050 FDSAPVHRTTNDGDLRAFKLRYTNKSASASFHDYGSGDPATDSHEMSYIVGTTMHCVAID 1109

Query: 646  WSQKLL-EKYNTHFLENLLEVFKNGPVTKKA--RT--EPLSLYTCLEAFLREEPLVPEDM 700
            WS K L   Y+    E   +V ++  V + A  RT  + + L  CLEAF++EEPL  +DM
Sbjct: 1110 WSPKALSHSYDDELFEQ--DVDEHVSVKENALDRTSMQGMPLSACLEAFIQEEPLGEDDM 1167

Query: 701  WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYV- 759
            WYC QCKE   A KKLDLWR+P +LV+HLKRFSYSR  + K++T V+FP++D +++ YV 
Sbjct: 1168 WYCKQCKEHVPALKKLDLWRMPPILVMHLKRFSYSRIYRDKIDTLVHFPLNDLDMSPYVL 1227

Query: 760  ANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINED-DVKSA 818
            AN +S    +Y+LYA+ NH+GGMG GHYTA+ +  +E  W+ +DDS  +P+     + + 
Sbjct: 1228 ANTSSGPAPVYDLYAVVNHFGGMGGGHYTAYTRHAEEGTWHLYDDSRCTPVESTAALNNK 1287

Query: 819  AAYVLFYRR 827
            AAYV+FY+R
Sbjct: 1288 AAYVVFYKR 1296


>gi|297285790|ref|XP_002802844.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4-like [Macaca
           mulatta]
          Length = 935

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 303/924 (32%), Positives = 441/924 (47%), Gaps = 167/924 (18%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 41  WFKQWKKYVGFD----SWDMYNVGEH--------NLFPGPIDNSGLFSDPESQ------T 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV                     
Sbjct: 83  LKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRKVS-------------------- 122

Query: 118 LVMPRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTLD 176
             + R  CS++  +   TI +  R+   +F +  E +  +W+ Y    +  ++ +D T+ 
Sbjct: 123 -YVDRPTCSSLSAA---TIEKEMRK---LFNIPAERETRLWNKYMSNTYEQLSKLDNTVQ 175

Query: 177 DANIQMDQDILVEVLDNVNGTNCKSSIQDN-------GFAEKKASSVLVEPSKSSLSIAG 229
           DA +   Q +++E   N +GT  + ++Q          F     SS     S S+  IA 
Sbjct: 176 DAGLYQGQVLVIEP-QNEDGTWPRQTLQSKSSTAPSRNFTTSPKSSASPYSSVSASPIAN 234

Query: 230 GWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNS 289
           G S S  T   HSS +S   +  SA  +     SS +       GL GL NLGNTCFMNS
Sbjct: 235 GDSTS--TCGMHSSGVSRGGSGFSASYNYQEPPSSHIQP-----GLCGLGNLGNTCFMNS 287

Query: 290 AIQCLVHTPEFARYF-REDYRREINWQNPLGMV--------------------------- 321
           A+QCL +T     YF +++Y  EIN  NPLGM                            
Sbjct: 288 ALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMF 347

Query: 322 --------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEY 361
                               ELLAFLLDGLHEDLNRVK KPY++ KDA+GRPD  VA E 
Sbjct: 348 KTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEA 407

Query: 362 WANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFT 421
           W NH  RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL     R M V +  
Sbjct: 408 WENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEVFLVP 467

Query: 422 SDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLI 479
           +D    P+ Y VTVP  G   DL + L  +C +  +E + VA++ NH   +   +D+   
Sbjct: 468 ADPHCRPTQYRVTVPLMGAVSDLCEALSRLCGIA-AENMVVADVYNHRFHKIFQMDE--- 523

Query: 480 SLSTIKDDDHLAAYRVPKL-VKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISR 538
            L+ I   D +  Y+V    V  +  + L    +E++   + T+S    YG PL+ S+ +
Sbjct: 524 GLNHIMPRDDIFVYQVCSTSVDGSECVTLPVYFRERKSRPSSTSSGSALYGQPLLLSVPK 583

Query: 539 DDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSM----------------------- 575
             +      Q+   R +S ++K+      D F  S +                       
Sbjct: 584 HKLTLESLYQAVCDR-ISRYVKQPL---PDDFGSSPLEPGTCNGSRNSCEGEDEEEMEHQ 639

Query: 576 ------VTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGD- 628
                 ++  + SGE    +      +     +          LV+        S+  D 
Sbjct: 640 EEGKEQLSETEGSGEDELGNDPTKTTQKKIKGQPCPKRLFTFSLVNSYGTADINSLATDG 699

Query: 629 KTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKN-----GPVTKKARTEPLSLY 683
           K +++ S ST   + +DW     E  + ++ E   E ++       P  KK  T  ++L 
Sbjct: 700 KLLKLNSRST---LAIDWDS---ETRSLYYDEQESEAYEKHVSMLQPQKKKKTT--VALR 751

Query: 684 TCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLE 743
            C+E F   E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + KL+
Sbjct: 752 DCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLD 811

Query: 744 TFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFD 803
           T V FPI   N++++V N  S+R  +Y+L A++NHYG MG GHYTA+ K     +WY FD
Sbjct: 812 TVVEFPIRGLNMSEFVCNP-SARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFD 870

Query: 804 DSHISPINEDDVKSAAAYVLFYRR 827
           DS++S  +ED + + AAYVLFY+R
Sbjct: 871 DSNVSLASEDQIVTKAAYVLFYQR 894


>gi|296084018|emb|CBI24406.3| unnamed protein product [Vitis vinifera]
          Length = 921

 Score =  380 bits (977), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 235/565 (41%), Positives = 303/565 (53%), Gaps = 106/565 (18%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSAS-----KRPSGIDNSDLV-NDATAED 54
           WW+       + Q +N  DG++      SA   +S     K  + I NSDLV N    ED
Sbjct: 28  WWK-------EAQDSNLADGNAKRGVLYSARPGSSYVGPMKIINNIFNSDLVFNLRREED 80

Query: 55  PGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLR 114
            G   E  +  + GRDY L+P ++W Q   W+       +   +  + + ++A +VYPL 
Sbjct: 81  SGHSNENGEVGVSGRDYALVPGDLWLQALKWHTDSRVATKDGRTFSVMEDDMA-DVYPLL 139

Query: 115 LQLLVMPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRT 174
           L+L ++       ++I+KK+   E  RRAC IF +  E + IWD+ G      +ND ++ 
Sbjct: 140 LRLSILRETNSLGVKITKKDNAVEFFRRACKIFSVESELLHIWDFSGQTTLFFINDKNKL 199

Query: 175 LDDANIQMDQDILVE--VLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWS 232
             D   Q DQ+IL+E  V    +   C+   +D   A+                      
Sbjct: 200 PKDCQRQSDQEILLELQVYGLSDSLRCREGKKDEMAAQ---------------------- 237

Query: 233 ASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQ 292
                   HS       NLA    S    GSSG      S+GLTGL NLGNTCFMNS++Q
Sbjct: 238 --------HS-------NLAG---SSFFYGSSG---EAGSLGLTGLQNLGNTCFMNSSLQ 276

Query: 293 CLVHTPEFARYFREDYRREINWQNPLGM-------------------------------- 320
           CL HTP+   YF  DY REIN +N LGM                                
Sbjct: 277 CLAHTPKLVDYFLGDYSREINHENALGMDGEIALAFGDLIRKLWAPGATPVAPRMFKSKL 336

Query: 321 ---------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANH 365
                           ELLAFLLDGLHEDLNRVK KPYI++KD +G PDEEVADEYW NH
Sbjct: 337 ARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYIEAKDGEGWPDEEVADEYWRNH 396

Query: 366 IARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGS 425
           +ARNDSIIVDV QGQY+STLVCPVC KVS+TFDPFMYLSLPL +TT RTMT+TV ++DG 
Sbjct: 397 LARNDSIIVDVSQGQYRSTLVCPVCKKVSITFDPFMYLSLPLPSTTMRTMTLTVVSADGI 456

Query: 426 ALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIK 485
             PS  T+TVPK+G+C DLIQ L + C LK  E L VAEI N+ I R+L+DP  SLS I+
Sbjct: 457 TQPSPCTITVPKNGKCEDLIQALSSSCYLKDDETLLVAEIYNNRIIRYLEDPTDSLSLIR 516

Query: 486 DDDHLAAYRVPKLVKKAVFLQLIHR 510
           D D L AYR+PK+  +   +  +H+
Sbjct: 517 DGDRLVAYRLPKVTNEDRLVVFMHQ 541



 Score =  247 bits (631), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 122/232 (52%), Positives = 167/232 (71%), Gaps = 18/232 (7%)

Query: 608 NLPLQLVDESNVCFDLSVEG--------DKTIRIPSSSTS----IVVYVDWSQKLLEKYN 655
           NL L+L++     F ++ EG        +KTI +   S +    + + V W +K +E+Y+
Sbjct: 692 NLYLKLINP----FQITSEGISNNSDSSEKTIWVDPDSDAELQRLNLLVFWPEKKIEQYD 747

Query: 656 THFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKK 715
           TH + +L E+FK+G + ++ + E +SLY CLEAFL+EEPL P+DMWYCP CK  RQASKK
Sbjct: 748 THLISSLPEIFKSGFIARRPQ-ESVSLYRCLEAFLKEEPLGPDDMWYCPGCKTHRQASKK 806

Query: 716 LDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYAL 775
           LDLWRLPE+LVIHLKRFSYSR MK+KLET+V+FP+ + +L+ Y+ +KN      Y LYA+
Sbjct: 807 LDLWRLPEILVIHLKRFSYSRFMKNKLETYVDFPVDNLDLSTYITHKNGMVSNRYMLYAV 866

Query: 776 TNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           +NHYG MG GHYTA +     ++WY+FDDSH+SPI ED +K++AAYVLFYRR
Sbjct: 867 SNHYGSMGGGHYTAFVH-HGGDQWYDFDDSHVSPIPEDKIKTSAAYVLFYRR 917


>gi|115485479|ref|NP_001067883.1| Os11g0473200 [Oryza sativa Japonica Group]
 gi|108864372|gb|ABA93659.2| Ubiquitin carboxyl-terminal hydrolase 5, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113645105|dbj|BAF28246.1| Os11g0473200 [Oryza sativa Japonica Group]
          Length = 382

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/325 (60%), Positives = 253/325 (77%), Gaps = 9/325 (2%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           WWQ WIDYV QD  N+T +GS   EH    GS+  +RP  IDN+DL++D  +E      E
Sbjct: 49  WWQSWIDYVIQDLANSTNNGSHHHEH----GSNVLRRPGAIDNTDLIDDTASEVSNMEIE 104

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVM 120
           + DTL+EGRDYILLPQ+VW +LH WYGGGPTL RK I++GLSQT+LA+EVYPLRLQLL+ 
Sbjct: 105 LHDTLVEGRDYILLPQQVWEKLHGWYGGGPTLPRKAINTGLSQTDLAIEVYPLRLQLLLA 164

Query: 121 PRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANI 180
           P+GE + IRISKK+T+GELH++AC +F L  +++CIWDYYG  +H+LM+++++TLDDANI
Sbjct: 165 PKGEQAVIRISKKDTVGELHKKACEVFDLIPDEVCIWDYYGRTRHSLMDNLEKTLDDANI 224

Query: 181 QMDQDILVEVLDNVNGT---NCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGT 237
           QMDQDILVEV  + NG+    C  SIQ+N + E++++S++ + SKS LS    ++++  T
Sbjct: 225 QMDQDILVEVTTDANGSLDGGCIGSIQENEYLERESTSLIADASKSGLS-NENFASNNYT 283

Query: 238 SRNHSSEISTSPNLASAR-DSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVH 296
           SR++SS ++ S  L S+  D DN  G+S + TRG+ +GLTGLLNLGNTCFMNSAIQCLVH
Sbjct: 284 SRSYSSSLTQSQYLRSSNGDLDNMHGTSAMITRGSPLGLTGLLNLGNTCFMNSAIQCLVH 343

Query: 297 TPEFARYFREDYRREINWQNPLGMV 321
           TPEFARYFREDY REINWQNPLGMV
Sbjct: 344 TPEFARYFREDYHREINWQNPLGMV 368


>gi|23503563|dbj|BAC20463.1| deubiquitinating enzyme [Homo sapiens]
          Length = 921

 Score =  377 bits (969), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 295/918 (32%), Positives = 413/918 (44%), Gaps = 188/918 (20%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV        GD  S            S  P  I+N+ L  D           
Sbjct: 67  WYKQWEAYVQ------GGDQDS------------STFPGCINNATLFQDEI------NWR 102

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L+EG DY+LLP+  W+ L SWYG   G P + RKVI     Q    VEVYP+ L L
Sbjct: 103 LKEGLVEGEDYVLLPRRAWHYLVSWYGLEHGQPPIERKVIELPNIQ---KVEVYPVEL-L 158

Query: 118 LVMPR--GECSTIRISKKETIGELHRRACSIFYLN-LEQICIWDYYGHRKHALMNDMDRT 174
           LV     G+  T++ S  ++IG + R A   F +   E   +W          + D   T
Sbjct: 159 LVRHNDLGKSHTVQFSHTDSIGLVLRTARERFLVEPQEDTRLWAKNSEGSLDRLYDTHIT 218

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS 234
           + DA ++  Q I++E                     KK                G W   
Sbjct: 219 VLDAALETGQLIIME-------------------TRKKD---------------GTWP-- 242

Query: 235 KGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCL 294
                  S+++    N  S  D D               G+ GL NLGNTCFMNSA+QCL
Sbjct: 243 -------SAQLHVMNNNMSEEDEDFK----------GQPGICGLTNLGNTCFMNSALQCL 285

Query: 295 VHTPEFARYFRED-YRREINWQNPLGMV-------------------------------- 321
            + P+   YF  + Y  E+N++NPLGM                                 
Sbjct: 286 SNVPQLTEYFLNNCYLEELNFRNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVG 345

Query: 322 ---------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHI 366
                          ELL+FLLDGLHEDLNRVK K Y++  DA GRPD+EVA E W NH 
Sbjct: 346 HFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVELCDAAGRPDQEVAQEAWQNHK 405

Query: 367 ARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSA 426
            RNDS+IVD   G +KSTLVCP C  VSVTFDPF YLS+PL  +  R + V     D   
Sbjct: 406 RRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSVPLPISHKRVLEVFFIPMDPRR 465

Query: 427 LPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTI 484
            P  + + VPK G+  DL   L     +   E + VA++ +H   +   L++PL   S+I
Sbjct: 466 KPEQHRLVVPKKGKISDLCVALSKHTGIS-PERMMVADVFSHRFYKLYQLEEPL---SSI 521

Query: 485 KDDDHLAAYRVPKLV------KKAVFLQLIHRLQEQEPGAAQTTSQWKA--YGTPLVSSI 536
            D D +  Y V   +      ++ + + +   L+E+ P      S +    +G PL+ S+
Sbjct: 522 LDRDDIFVYEVSGRIEAIEGSREDIVVPVY--LRERTPARDYNNSYYGLMLFGHPLLVSV 579

Query: 537 SRDDVISSGKIQSTVQRMLSPFLKKESLMHADSF-------------DPSSMVTTVDPSG 583
            RD     G     + R+     K  S    D                PS+  +  DP  
Sbjct: 580 PRDRFTWEGLYNVLMYRLSRYVTKPNSDDEDDGDEKEDDEEDKDDVPGPSTGGSLRDPEP 639

Query: 584 EAHSNSSSNIAKEDASSSKAVTLPNLP----------LQLVDESNVCFDLSVEGDKTIRI 633
           E    SS    +        +     P          LQ V+ +          D+T   
Sbjct: 640 EQAGPSSGVTNRCPFLLDNCLGTSQWPPRRRRKQLFTLQTVNSNGT-------SDRTTSP 692

Query: 634 PSSSTSIVVYVDWSQKLLEKYNTHF-LENLLEVFKNGPVTKKARTEPLSLYTCLEAFLRE 692
                   + +DW  ++ ++Y      E  ++    G V KKA   P+ L  C+E F   
Sbjct: 693 EEVHAQPYIAIDWEPEMKKRYYDEVEAEGYVKHDCVGYVMKKA---PVRLQECIELFTTV 749

Query: 693 EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHD 752
           E L  E+ WYCP CK+ + A+KKLDLW LPE+L+IHLKRFSY++  + KL+T V FPI D
Sbjct: 750 ETLEKENPWYCPSCKQHQLATKKLDLWMLPEILIIHLKRFSYTKFSREKLDTLVEFPIRD 809

Query: 753 FNLTKYVAN-KNSSRRQL--YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISP 809
            + +++V   +N S  +L  Y+L A++NHYGGM  GHYT      D  +W+ FDD+ +SP
Sbjct: 810 LDFSEFVIQPQNESNPELYKYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYFDDNSVSP 869

Query: 810 INEDDVKSAAAYVLFYRR 827
           +NE+ ++S AAYVLFY+R
Sbjct: 870 VNENQIESKAAYVLFYQR 887


>gi|39795322|gb|AAH63668.1| USP11 protein, partial [Homo sapiens]
          Length = 923

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 295/918 (32%), Positives = 412/918 (44%), Gaps = 188/918 (20%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV        GD  S            S  P  I+N+ L  D           
Sbjct: 69  WYKQWEAYVQ------GGDQDS------------STFPGCINNATLFQDEI------NWR 104

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L+EG DY+LLP   W+ L SWYG   G P + RKVI     Q    VEVYP+ L L
Sbjct: 105 LKEGLVEGEDYVLLPAAAWHYLVSWYGLEHGQPPIERKVIELPNIQ---KVEVYPVEL-L 160

Query: 118 LVMPR--GECSTIRISKKETIGELHRRACSIFYLN-LEQICIWDYYGHRKHALMNDMDRT 174
           LV     G+  T++ S  ++IG + R A   F +   E   +W          + D   T
Sbjct: 161 LVRHNDLGKSHTVQFSHTDSIGLVLRTARERFLVEPQEDTRLWAKNSEGSLDRLYDTHIT 220

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS 234
           + DA ++  Q I++E                     KK                G W   
Sbjct: 221 VLDAALETGQLIIME-------------------TRKKD---------------GTWP-- 244

Query: 235 KGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCL 294
                  S+++    N  S  D D               G+ GL NLGNTCFMNSA+QCL
Sbjct: 245 -------SAQLHVMNNNMSEEDEDFK----------GQPGICGLTNLGNTCFMNSALQCL 287

Query: 295 VHTPEFARYFRED-YRREINWQNPLGMV-------------------------------- 321
            + P+   YF  + Y  E+N++NPLGM                                 
Sbjct: 288 SNVPQLTEYFLNNCYLEELNFRNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVG 347

Query: 322 ---------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHI 366
                          ELL+FLLDGLHEDLNRVK K Y++  DA GRPD+EVA E W NH 
Sbjct: 348 HFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVELCDAAGRPDQEVAQEAWQNHK 407

Query: 367 ARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSA 426
            RNDS+IVD   G +KSTLVCP C  VSVTFDPF YLS+PL  +  R + V     D   
Sbjct: 408 RRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSVPLPISHKRVLEVFFIPMDPRR 467

Query: 427 LPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTI 484
            P  + + VPK G+  DL   L     +   E + VA++ +H   +   L++PL   S+I
Sbjct: 468 KPEQHRLVVPKKGKISDLCVALSKHTGIS-PERMMVADVFSHRFYKLYQLEEPL---SSI 523

Query: 485 KDDDHLAAYRVPKLV------KKAVFLQLIHRLQEQEPGAAQTTSQWKA--YGTPLVSSI 536
            D D +  Y V   +      ++ + + +   L+E+ P      S +    +G PL+ S+
Sbjct: 524 LDRDDIFVYEVSGRIEAIEGSREDIVVPVY--LRERTPARDYNNSYYGLMLFGHPLLVSV 581

Query: 537 SRDDVISSGKIQSTVQRMLSPFLKKESLMHADSF-------------DPSSMVTTVDPSG 583
            RD     G     + R+     K  S    D                PS+  +  DP  
Sbjct: 582 PRDRFTWEGLYNVLMYRLSRYVTKPNSDDEDDGDEKEDDEEDKDDVPGPSTGGSLRDPEP 641

Query: 584 EAHSNSSSNIAKEDASSSKAVTLPNLP----------LQLVDESNVCFDLSVEGDKTIRI 633
           E    SS    +        +     P          LQ V+ +          D+T   
Sbjct: 642 EQAGPSSGVTNRCPFLLDNCLGTSQWPPRRRRKQLFTLQTVNSNGT-------SDRTTSP 694

Query: 634 PSSSTSIVVYVDWSQKLLEKYNTHF-LENLLEVFKNGPVTKKARTEPLSLYTCLEAFLRE 692
                   + +DW  ++ ++Y      E  ++    G V KKA   P+ L  C+E F   
Sbjct: 695 EEVHAQPYIAIDWEPEMKKRYYDEVEAEGYVKHDCVGYVMKKA---PVRLQECIELFTTV 751

Query: 693 EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHD 752
           E L  E+ WYCP CK+ + A+KKLDLW LPE+L+IHLKRFSY++  + KL+T V FPI D
Sbjct: 752 ETLEKENPWYCPSCKQHQLATKKLDLWMLPEILIIHLKRFSYTKFSREKLDTLVEFPIRD 811

Query: 753 FNLTKYVAN-KNSSRRQL--YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISP 809
            + +++V   +N S  +L  Y+L A++NHYGGM  GHYT      D  +W+ FDD+ +SP
Sbjct: 812 LDFSEFVIQPQNESNPELYKYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYFDDNSVSP 871

Query: 810 INEDDVKSAAAYVLFYRR 827
           +NE+ ++S AAYVLFY+R
Sbjct: 872 VNENQIESKAAYVLFYQR 889


>gi|390343728|ref|XP_003725951.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4-like
           [Strongylocentrotus purpuratus]
          Length = 979

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 288/922 (31%), Positives = 438/922 (47%), Gaps = 150/922 (16%)

Query: 1   WWQHWIDYVNQDQPN--NTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAG 58
           W++ W  +V  D  +  N G+ +S               P  +DNS L  +      G  
Sbjct: 45  WFKQWKKFVGFDSWDVYNMGNDAS--------------NPGPVDNSGLFVE------GDV 84

Query: 59  PEIVDTLLEGRDYILLPQEVWNQLHSWYGG---GPTLARKVISSGLSQTELAVEVYPLRL 115
             + + L++  DY+L+P   W  L  WYG     P + RKV+  G+      VEVY + L
Sbjct: 85  GNLKEHLIDELDYVLVPTATWENLTIWYGAVKNQPPVHRKVVEYGMFVKHCKVEVYLMEL 144

Query: 116 QLL-------VMPRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHAL 167
           +L        ++P+      + SK +TI  + +    +F +  E +  IW+ Y    +  
Sbjct: 145 KLCENSNLDNMVPQ------KFSKADTIETIEKEMKRLFNIEDEKETRIWNKYMSNTYEQ 198

Query: 168 MNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSI 227
           ++  + T+ DA +   Q +++E  +           QD  +  + AS+     S    S 
Sbjct: 199 LSKKENTVQDAGLYQGQVLVIEQKN-----------QDGTWPRQPASNNSSTNSSYKDSS 247

Query: 228 AGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFM 287
           +   + S     N S +   SP   S+ ++ ++   S  +      GL GL NLGNTCFM
Sbjct: 248 SSTSTNSSRYITNSSGK---SPYSYSSYNNTSSSDYSR-SKPSVQEGLCGLGNLGNTCFM 303

Query: 288 NSAIQCLVHTPEFARYFRED-YRREINWQNPLGM-------------------------- 320
           NSA+QC+ + P   RYF  D +++E+N+ NPLGM                          
Sbjct: 304 NSALQCMNNVPPLTRYFLSDEFKKELNYNNPLGMHGEIAKAYADLVQHVWSGQNSYLIPR 363

Query: 321 ---------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVAD 359
                                 ELLAFL DGLHEDLNR++ KPY++ +D+DGR DE VAD
Sbjct: 364 NFKMQVGRFAPQFSGYQQHDSQELLAFLCDGLHEDLNRIQKKPYVELRDSDGRSDEVVAD 423

Query: 360 EYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTV 419
           E W+NH+ RNDSIIVD   GQ+KSTLVCP C KVSVTFDPF +LSLPL     RTM V +
Sbjct: 424 EAWSNHLKRNDSIIVDFFHGQFKSTLVCPECQKVSVTFDPFSFLSLPLPTKKERTMEVFL 483

Query: 420 FTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLI 479
              D  + P    V VPKHG   DL + +  +  +   +++ V ++ NH   +    P  
Sbjct: 484 IRLDPKSKPLQMKVVVPKHGMVYDLCKAISKVSQIA-PDKMAVTDVYNHRFHKVFA-PND 541

Query: 480 SLSTIKDDDHLAAYRVPKLVKKA------VFLQLIHRLQEQEPGAAQTTSQWKAYGTPLV 533
            + +I + D +  Y VP  V  A      +    +     +    + ++S +  +G P++
Sbjct: 542 RVESITERDDIFVYEVP--VNSADDPDTIIIPVYLRERNSKRASFSYSSSSYSLFGQPML 599

Query: 534 SSISRDDVISSGKIQSTVQRMLSPFLKKESLM-----HADSFDPSSMVTTVDPSGEAHSN 588
            ++ R         Q+T Q +    +KK S         D +        V  +GE   +
Sbjct: 600 IAVPRK--------QTTYQDLYEIIMKKMSRYVRRPDTEDWYKDDEEGNEVVENGETEMD 651

Query: 589 SSSNIAKEDASSSKAVTL------PNLPLQL-------VDESNVCFDLSVEGD----KTI 631
           S S+ +KE  SS +  T       P  P +        +D  ++ F +S+       +  
Sbjct: 652 SDSD-SKEHCSSGEDTTQNHKEDPPTPPSKEKKTKSKPLDRRSLLFRMSLVNSYGSAELA 710

Query: 632 RIPSSSTSI------VVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTC 685
           R+      +       + +DW  K  +K+         E  ++  +   +R + + L  C
Sbjct: 711 RLKDDGAPLRFNNRTYIALDWKDKAKDKFYIETEAEDSEPHESMNLRSVSRKQQVDLNEC 770

Query: 686 LEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETF 745
           L  FL EE L  ED WYCP CK+ ++A+KK DLW+LP+VL+IHLKRFSY+R ++ KL+T 
Sbjct: 771 LNLFLTEETLEKEDSWYCPACKKHQEATKKFDLWKLPKVLIIHLKRFSYNRFLRDKLDTL 830

Query: 746 VNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDS 805
           V FP  + +++  V   N    Q Y+L A++NHYGGMG GHYTA+ +      WY FDDS
Sbjct: 831 VTFPTENLDMSSSVICPNGGPYQ-YDLVAVSNHYGGMGGGHYTAYAQNACTQNWYYFDDS 889

Query: 806 HISPINEDDVKSAAAYVLFYRR 827
            +S  +++ V S AAYVLFY R
Sbjct: 890 SVSDASKEQVVSKAAYVLFYLR 911


>gi|24234683|ref|NP_004642.2| ubiquitin carboxyl-terminal hydrolase 11 [Homo sapiens]
 gi|251757432|sp|P51784.3|UBP11_HUMAN RecName: Full=Ubiquitin carboxyl-terminal hydrolase 11; AltName:
           Full=Deubiquitinating enzyme 11; AltName: Full=Ubiquitin
           thioesterase 11; AltName:
           Full=Ubiquitin-specific-processing protease 11
 gi|187954551|gb|AAI40850.1| Ubiquitin specific peptidase 11 [Homo sapiens]
          Length = 963

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 295/918 (32%), Positives = 412/918 (44%), Gaps = 188/918 (20%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV        GD  S            S  P  I+N+ L  D           
Sbjct: 109 WYKQWEAYVQ------GGDQDS------------STFPGCINNATLFQDEINW------R 144

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L+EG DY+LLP   W+ L SWYG   G P + RKVI     Q    VEVYP+ L L
Sbjct: 145 LKEGLVEGEDYVLLPAAAWHYLVSWYGLEHGQPPIERKVIELPNIQ---KVEVYPVEL-L 200

Query: 118 LVMPR--GECSTIRISKKETIGELHRRACSIFYLN-LEQICIWDYYGHRKHALMNDMDRT 174
           LV     G+  T++ S  ++IG + R A   F +   E   +W          + D   T
Sbjct: 201 LVRHNDLGKSHTVQFSHTDSIGLVLRTARERFLVEPQEDTRLWAKNSEGSLDRLYDTHIT 260

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS 234
           + DA ++  Q I++E                     KK                G W   
Sbjct: 261 VLDAALETGQLIIME-------------------TRKKD---------------GTWP-- 284

Query: 235 KGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCL 294
                  S+++    N  S  D D               G+ GL NLGNTCFMNSA+QCL
Sbjct: 285 -------SAQLHVMNNNMSEEDEDFK----------GQPGICGLTNLGNTCFMNSALQCL 327

Query: 295 VHTPEFARYFRED-YRREINWQNPLGMV-------------------------------- 321
            + P+   YF  + Y  E+N++NPLGM                                 
Sbjct: 328 SNVPQLTEYFLNNCYLEELNFRNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVG 387

Query: 322 ---------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHI 366
                          ELL+FLLDGLHEDLNRVK K Y++  DA GRPD+EVA E W NH 
Sbjct: 388 HFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVELCDAAGRPDQEVAQEAWQNHK 447

Query: 367 ARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSA 426
            RNDS+IVD   G +KSTLVCP C  VSVTFDPF YLS+PL  +  R + V     D   
Sbjct: 448 RRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSVPLPISHKRVLEVFFIPMDPRR 507

Query: 427 LPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTI 484
            P  + + VPK G+  DL   L     +   E + VA++ +H   +   L++PL   S+I
Sbjct: 508 KPEQHRLVVPKKGKISDLCVALSKHTGIS-PERMMVADVFSHRFYKLYQLEEPL---SSI 563

Query: 485 KDDDHLAAYRVPKLV------KKAVFLQLIHRLQEQEPGAAQTTSQWKA--YGTPLVSSI 536
            D D +  Y V   +      ++ + + +   L+E+ P      S +    +G PL+ S+
Sbjct: 564 LDRDDIFVYEVSGRIEAIEGSREDIVVPVY--LRERTPARDYNNSYYGLMLFGHPLLVSV 621

Query: 537 SRDDVISSGKIQSTVQRMLSPFLKKESLMHADSF-------------DPSSMVTTVDPSG 583
            RD     G     + R+     K  S    D                PS+  +  DP  
Sbjct: 622 PRDRFTWEGLYNVLMYRLSRYVTKPNSDDEDDGDEKEDDEEDKDDVPGPSTGGSLRDPEP 681

Query: 584 EAHSNSSSNIAKEDASSSKAVTLPNLP----------LQLVDESNVCFDLSVEGDKTIRI 633
           E    SS    +        +     P          LQ V+ +          D+T   
Sbjct: 682 EQAGPSSGVTNRCPFLLDNCLGTSQWPPRRRRKQLFTLQTVNSNGT-------SDRTTSP 734

Query: 634 PSSSTSIVVYVDWSQKLLEKYNTHF-LENLLEVFKNGPVTKKARTEPLSLYTCLEAFLRE 692
                   + +DW  ++ ++Y      E  ++    G V KKA   P+ L  C+E F   
Sbjct: 735 EEVHAQPYIAIDWEPEMKKRYYDEVEAEGYVKHDCVGYVMKKA---PVRLQECIELFTTV 791

Query: 693 EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHD 752
           E L  E+ WYCP CK+ + A+KKLDLW LPE+L+IHLKRFSY++  + KL+T V FPI D
Sbjct: 792 ETLEKENPWYCPSCKQHQLATKKLDLWMLPEILIIHLKRFSYTKFSREKLDTLVEFPIRD 851

Query: 753 FNLTKYVAN-KNSSRRQL--YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISP 809
            + +++V   +N S  +L  Y+L A++NHYGGM  GHYT      D  +W+ FDD+ +SP
Sbjct: 852 LDFSEFVIQPQNESNPELYKYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYFDDNSVSP 911

Query: 810 INEDDVKSAAAYVLFYRR 827
           +NE+ ++S AAYVLFY+R
Sbjct: 912 VNENQIESKAAYVLFYQR 929


>gi|332243835|ref|XP_003271077.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 11 [Nomascus
           leucogenys]
          Length = 963

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 295/918 (32%), Positives = 412/918 (44%), Gaps = 188/918 (20%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV        GD  S            S  P  I+N+ L  D           
Sbjct: 109 WYKQWEAYVQ------GGDQDS------------STFPGCINNATLFQDEINW------R 144

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L+EG DY+LLP   W+ L SWYG   G P + RKVI     Q    VEVYP+ L L
Sbjct: 145 LKEGLVEGEDYVLLPAAAWHYLVSWYGLEHGQPPIERKVIELPNIQ---KVEVYPVEL-L 200

Query: 118 LVMPR--GECSTIRISKKETIGELHRRACSIFYLN-LEQICIWDYYGHRKHALMNDMDRT 174
           LV     G+  T++ S  ++IG + R A   F +   E   +W          + D   T
Sbjct: 201 LVRHNDLGKSHTVQFSHTDSIGLVLRTARERFLVEPQEDTRLWAKNSEGSLDRLYDTHIT 260

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS 234
           + DA ++  Q I++E                     KK                G W   
Sbjct: 261 VLDAALETGQLIIME-------------------TRKKD---------------GTWP-- 284

Query: 235 KGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCL 294
                  S+++    N  S  D D               G+ GL NLGNTCFMNSA+QCL
Sbjct: 285 -------SAQLHVMNNNMSEEDEDFK----------GQPGICGLTNLGNTCFMNSALQCL 327

Query: 295 VHTPEFARYFRED-YRREINWQNPLGMV-------------------------------- 321
            + P+   YF  + Y  E+N++NPLGM                                 
Sbjct: 328 SNVPQLTEYFLNNCYLEELNFRNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVG 387

Query: 322 ---------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHI 366
                          ELL+FLLDGLHEDLNRVK K Y++  DA GRPD+EVA E W NH 
Sbjct: 388 HFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVELCDAAGRPDQEVAQEAWQNHK 447

Query: 367 ARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSA 426
            RNDS+IVD   G +KSTLVCP C  VSVTFDPF YLS+PL  +  R + V     D   
Sbjct: 448 RRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSVPLPISHKRVLEVFFIPMDPRR 507

Query: 427 LPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTI 484
            P  + + VPK G+  DL   L     +   E + VA++ +H   +   L++PL   S+I
Sbjct: 508 KPEQHRLVVPKKGKISDLCVALSKHTGIS-PERMMVADVFSHRFYKLYQLEEPL---SSI 563

Query: 485 KDDDHLAAYRVPKLV------KKAVFLQLIHRLQEQEPGAAQTTSQWKA--YGTPLVSSI 536
            D D +  Y V   +      ++ + + +   L+E+ P      S +    +G PL+ S+
Sbjct: 564 LDRDDIFVYEVSGRIEAIEGSREDIVVPVY--LRERTPARDYNNSYYGLMLFGHPLLVSV 621

Query: 537 SRDDVISSGKIQSTVQRMLSPFLKKESLMHADSF-------------DPSSMVTTVDPSG 583
            RD     G     + R+     K  S    D                PS+  +  DP  
Sbjct: 622 PRDRFTWEGLYNVLMYRLSRYVTKPNSDDEDDGDEKEDDEEDKDDVPGPSTGGSLRDPEP 681

Query: 584 EAHSNSSSNIAKEDASSSKAVTLPNLP----------LQLVDESNVCFDLSVEGDKTIRI 633
           E    SS    +        +     P          LQ V+ +          D+T   
Sbjct: 682 EQAGPSSGVTNRCPFLLDNCLGTSQWPPRRRRKQLFTLQTVNSNGT-------SDRTTSP 734

Query: 634 PSSSTSIVVYVDWSQKLLEKYNTHF-LENLLEVFKNGPVTKKARTEPLSLYTCLEAFLRE 692
                   + +DW  ++ ++Y      E  ++    G V KKA   P+ L  C+E F   
Sbjct: 735 EEVHAQPYIAIDWEPEMKKRYYDEVEAEGYVKHDCVGYVMKKA---PVRLQECIELFTTV 791

Query: 693 EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHD 752
           E L  E+ WYCP CK+ + A+KKLDLW LPE+L+IHLKRFSY++  + KL+T V FPI D
Sbjct: 792 ETLEKENPWYCPSCKQHQLATKKLDLWMLPEILIIHLKRFSYTKFSREKLDTLVEFPIRD 851

Query: 753 FNLTKYVAN-KNSSRRQL--YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISP 809
            + +++V   +N S  +L  Y+L A++NHYGGM  GHYT      D  +W+ FDD+ +SP
Sbjct: 852 LDFSEFVIQPQNESNPELYKYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYFDDNSVSP 911

Query: 810 INEDDVKSAAAYVLFYRR 827
           +NE+ ++S AAYVLFY+R
Sbjct: 912 VNENQIESKAAYVLFYQR 929


>gi|55728896|emb|CAH91186.1| hypothetical protein [Pongo abelii]
          Length = 920

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 294/918 (32%), Positives = 412/918 (44%), Gaps = 188/918 (20%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV        GD  S            S  P  I+N+ L  D           
Sbjct: 66  WYKQWEAYVQ------GGDQDS------------STFPGCINNATLFQDEI------NWR 101

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L+EG DY+LLP   W+ + SWYG   G P + RKVI     Q    VEVYP+ L L
Sbjct: 102 LKEGLVEGEDYVLLPAAAWHDMVSWYGLEHGQPPIERKVIELPNIQ---KVEVYPVEL-L 157

Query: 118 LVMPR--GECSTIRISKKETIGELHRRACSIFYLN-LEQICIWDYYGHRKHALMNDMDRT 174
           LV     G+  T++ S  ++IG + R A   F +   E   +W          + D   T
Sbjct: 158 LVRHNDLGKSHTVQFSHTDSIGLVLRTARERFLVEPQEDTRLWAKNSEGSLDRLYDTHIT 217

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS 234
           + DA ++  Q I++E                     KK                G W   
Sbjct: 218 VLDAALETGQLIIME-------------------TRKKD---------------GTWP-- 241

Query: 235 KGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCL 294
                  S+++    N  S  D D               G+ GL NLGNTCFMNSA+QCL
Sbjct: 242 -------SAQLHVMNNNMSEEDEDFK----------GQPGICGLTNLGNTCFMNSALQCL 284

Query: 295 VHTPEFARYFRED-YRREINWQNPLGMV-------------------------------- 321
            + P+   YF  + Y  E+N++NPLGM                                 
Sbjct: 285 SNVPQLTEYFLNNCYLEELNFRNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVG 344

Query: 322 ---------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHI 366
                          ELL+FLLDGLHEDLNRVK K Y++  DA GRPD+EVA E W NH 
Sbjct: 345 HFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVELCDAAGRPDQEVAQEAWQNHK 404

Query: 367 ARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSA 426
            RNDS+IVD   G +KSTLVCP C  VSVTFDPF YLS+PL  +  R + V     D   
Sbjct: 405 RRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSVPLPISHKRVLEVFFIPMDPRR 464

Query: 427 LPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTI 484
            P  + + VPK G+  DL   L     +   E + VA++ +H   +   L++PL   S+I
Sbjct: 465 KPEQHRLVVPKKGKISDLCVALSKHTGIS-PERMMVADVFSHRFYKLYQLEEPL---SSI 520

Query: 485 KDDDHLAAYRVPKLV------KKAVFLQLIHRLQEQEPGAAQTTSQWKA--YGTPLVSSI 536
            D D +  Y V   +      ++ + + +   L+E+ P      S +    +G PL+ S+
Sbjct: 521 LDRDDIFVYEVSGRIEAIEGSREDIVVPVY--LRERTPARDYNNSYYGLMLFGHPLLVSV 578

Query: 537 SRDDVISSGKIQSTVQRMLSPFLKKESLMHADSF-------------DPSSMVTTVDPSG 583
            RD     G     + R+     K  S    D                PS+  +  DP  
Sbjct: 579 PRDRFTWEGLYNVLMYRLSRYVTKPNSDDEDDGDEKEDDEEDKDDVPGPSTGGSLRDPEP 638

Query: 584 EAHSNSSSNIAKEDASSSKAVTLPNLP----------LQLVDESNVCFDLSVEGDKTIRI 633
           E    SS    +        +     P          LQ V+ +          D+T   
Sbjct: 639 EQAGPSSGVTNRCPFLLDNCLGTSQWPPRRRRKQLFTLQTVNSNGT-------SDRTTSP 691

Query: 634 PSSSTSIVVYVDWSQKLLEKYNTHF-LENLLEVFKNGPVTKKARTEPLSLYTCLEAFLRE 692
                   + +DW  ++ ++Y      E  ++    G V KKA   P+ L  C+E F   
Sbjct: 692 EEVHAQPYIAIDWEPEMKKRYYDEVEAEGYVKHDCVGYVMKKA---PVRLQECIELFTTV 748

Query: 693 EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHD 752
           E L  E+ WYCP CK+ + A+KKLDLW LPE+L+IHLKRFSY++  + KL+T V FPI D
Sbjct: 749 ETLEKENPWYCPSCKQHQLATKKLDLWMLPEILIIHLKRFSYTKFSREKLDTLVEFPIRD 808

Query: 753 FNLTKYVAN-KNSSRRQL--YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISP 809
            + +++V   +N S  +L  Y+L A++NHYGGM  GHYT      D  +W+ FDD+ +SP
Sbjct: 809 LDFSEFVIQPQNDSNPELYKYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYFDDNSVSP 868

Query: 810 INEDDVKSAAAYVLFYRR 827
           +NE+ ++S AAYVLFY+R
Sbjct: 869 VNENQIESKAAYVLFYQR 886


>gi|119579693|gb|EAW59289.1| ubiquitin specific peptidase 11, isoform CRA_b [Homo sapiens]
 gi|168277940|dbj|BAG10948.1| ubiquitin carboxyl-terminal hydrolase 11 [synthetic construct]
          Length = 920

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 295/918 (32%), Positives = 412/918 (44%), Gaps = 188/918 (20%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV        GD  S            S  P  I+N+ L  D           
Sbjct: 66  WYKQWEAYVQ------GGDQDS------------STFPGCINNATLFQDEI------NWR 101

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L+EG DY+LLP   W+ L SWYG   G P + RKVI     Q    VEVYP+ L L
Sbjct: 102 LKEGLVEGEDYVLLPAAAWHYLVSWYGLEHGQPPIERKVIELPNIQ---KVEVYPVEL-L 157

Query: 118 LVMPR--GECSTIRISKKETIGELHRRACSIFYLN-LEQICIWDYYGHRKHALMNDMDRT 174
           LV     G+  T++ S  ++IG + R A   F +   E   +W          + D   T
Sbjct: 158 LVRHNDLGKSHTVQFSHTDSIGLVLRTARERFLVEPQEDTRLWAKNSEGSLDRLYDTHIT 217

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS 234
           + DA ++  Q I++E                     KK                G W   
Sbjct: 218 VLDAALETGQLIIME-------------------TRKKD---------------GTWP-- 241

Query: 235 KGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCL 294
                  S+++    N  S  D D               G+ GL NLGNTCFMNSA+QCL
Sbjct: 242 -------SAQLHVMNNNMSEEDEDFK----------GQPGICGLTNLGNTCFMNSALQCL 284

Query: 295 VHTPEFARYFRED-YRREINWQNPLGMV-------------------------------- 321
            + P+   YF  + Y  E+N++NPLGM                                 
Sbjct: 285 SNVPQLTEYFLNNCYLEELNFRNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVG 344

Query: 322 ---------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHI 366
                          ELL+FLLDGLHEDLNRVK K Y++  DA GRPD+EVA E W NH 
Sbjct: 345 HFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVELCDAAGRPDQEVAQEAWQNHK 404

Query: 367 ARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSA 426
            RNDS+IVD   G +KSTLVCP C  VSVTFDPF YLS+PL  +  R + V     D   
Sbjct: 405 RRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSVPLPISHKRVLEVFFIPMDPRR 464

Query: 427 LPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTI 484
            P  + + VPK G+  DL   L     +   E + VA++ +H   +   L++PL   S+I
Sbjct: 465 KPEQHRLVVPKKGKISDLCVALSKHTGIS-PERMMVADVFSHRFYKLYQLEEPL---SSI 520

Query: 485 KDDDHLAAYRVPKLV------KKAVFLQLIHRLQEQEPGAAQTTSQWKA--YGTPLVSSI 536
            D D +  Y V   +      ++ + + +   L+E+ P      S +    +G PL+ S+
Sbjct: 521 LDRDDIFVYEVSGRIEAIEGSREDIVVPVY--LRERTPARDYNNSYYGLMLFGHPLLVSV 578

Query: 537 SRDDVISSGKIQSTVQRMLSPFLKKESLMHADSF-------------DPSSMVTTVDPSG 583
            RD     G     + R+     K  S    D                PS+  +  DP  
Sbjct: 579 PRDRFTWEGLYNVLMYRLSRYVTKPNSDDEDDGDEKEDDEEDKDDVPGPSTGGSLRDPEP 638

Query: 584 EAHSNSSSNIAKEDASSSKAVTLPNLP----------LQLVDESNVCFDLSVEGDKTIRI 633
           E    SS    +        +     P          LQ V+ +          D+T   
Sbjct: 639 EQAGPSSGVTNRCPFLLDNCLGTSQWPPRRRRKQLFTLQTVNSNGT-------SDRTTSP 691

Query: 634 PSSSTSIVVYVDWSQKLLEKYNTHF-LENLLEVFKNGPVTKKARTEPLSLYTCLEAFLRE 692
                   + +DW  ++ ++Y      E  ++    G V KKA   P+ L  C+E F   
Sbjct: 692 EEVHAQPYIAIDWEPEMKKRYYDEVEAEGYVKHDCVGYVMKKA---PVRLQECIELFTTV 748

Query: 693 EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHD 752
           E L  E+ WYCP CK+ + A+KKLDLW LPE+L+IHLKRFSY++  + KL+T V FPI D
Sbjct: 749 ETLEKENPWYCPSCKQHQLATKKLDLWMLPEILIIHLKRFSYTKFSREKLDTLVEFPIRD 808

Query: 753 FNLTKYVAN-KNSSRRQL--YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISP 809
            + +++V   +N S  +L  Y+L A++NHYGGM  GHYT      D  +W+ FDD+ +SP
Sbjct: 809 LDFSEFVIQPQNESNPELYKYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYFDDNSVSP 868

Query: 810 INEDDVKSAAAYVLFYRR 827
           +NE+ ++S AAYVLFY+R
Sbjct: 869 VNENQIESKAAYVLFYQR 886


>gi|55727816|emb|CAH90661.1| hypothetical protein [Pongo abelii]
          Length = 931

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 294/918 (32%), Positives = 412/918 (44%), Gaps = 188/918 (20%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV        GD  S            S  P  I+N+ L  D           
Sbjct: 77  WYKQWEAYVQ------GGDQDS------------STFPGCINNATLFQDEI------NWR 112

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L+EG DY+LLP   W+ + SWYG   G P + RKVI     Q    VEVYP+ L L
Sbjct: 113 LKEGLVEGEDYVLLPAAAWHDMVSWYGLEHGQPPIERKVIELPNIQ---KVEVYPVEL-L 168

Query: 118 LVMPR--GECSTIRISKKETIGELHRRACSIFYLN-LEQICIWDYYGHRKHALMNDMDRT 174
           LV     G+  T++ S  ++IG + R A   F +   E   +W          + D   T
Sbjct: 169 LVRHNDLGKSHTVQFSHTDSIGLVLRTARERFLVEPQEDTRLWAKNSEGSLDRLYDTHIT 228

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS 234
           + DA ++  Q I++E                     KK                G W   
Sbjct: 229 VLDAALETGQLIIME-------------------TRKKD---------------GTWP-- 252

Query: 235 KGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCL 294
                  S+++    N  S  D D               G+ GL NLGNTCFMNSA+QCL
Sbjct: 253 -------SAQLHVMNNNMSEEDEDFK----------GQPGICGLTNLGNTCFMNSALQCL 295

Query: 295 VHTPEFARYFRED-YRREINWQNPLGMV-------------------------------- 321
            + P+   YF  + Y  E+N++NPLGM                                 
Sbjct: 296 SNVPQLTEYFLNNCYLEELNFRNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVG 355

Query: 322 ---------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHI 366
                          ELL+FLLDGLHEDLNRVK K Y++  DA GRPD+EVA E W NH 
Sbjct: 356 HFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVELCDAAGRPDQEVAQEAWQNHK 415

Query: 367 ARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSA 426
            RNDS+IVD   G +KSTLVCP C  VSVTFDPF YLS+PL  +  R + V     D   
Sbjct: 416 RRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSVPLPISHKRVLEVFFIPMDPRR 475

Query: 427 LPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTI 484
            P  + + VPK G+  DL   L     +   E + VA++ +H   +   L++PL   S+I
Sbjct: 476 KPEQHRLVVPKKGKISDLCVALSKHTGIS-PERMMVADVFSHRFYKLYQLEEPL---SSI 531

Query: 485 KDDDHLAAYRVPKLV------KKAVFLQLIHRLQEQEPGAAQTTSQWKA--YGTPLVSSI 536
            D D +  Y V   +      ++ + + +   L+E+ P      S +    +G PL+ S+
Sbjct: 532 LDRDDIFVYEVSGRIEAIEGSREDIVVPVY--LRERTPARDYNNSYYGLMLFGHPLLVSV 589

Query: 537 SRDDVISSGKIQSTVQRMLSPFLKKESLMHADSF-------------DPSSMVTTVDPSG 583
            RD     G     + R+     K  S    D                PS+  +  DP  
Sbjct: 590 PRDRFTWEGLYNVLMYRLSRYVTKPNSDDEDDGDEKEDDEEDKDDVPGPSTGGSLRDPEP 649

Query: 584 EAHSNSSSNIAKEDASSSKAVTLPNLP----------LQLVDESNVCFDLSVEGDKTIRI 633
           E    SS    +        +     P          LQ V+ +          D+T   
Sbjct: 650 EQAGPSSGVTNRCPFLLDNCLGTSQWPPRRRRKQLFTLQTVNSNGT-------SDRTTSP 702

Query: 634 PSSSTSIVVYVDWSQKLLEKYNTHF-LENLLEVFKNGPVTKKARTEPLSLYTCLEAFLRE 692
                   + +DW  ++ ++Y      E  ++    G V KKA   P+ L  C+E F   
Sbjct: 703 EEVHAQPYIAIDWEPEMKKRYYDEVEAEGYVKHDCVGYVMKKA---PVRLQECIELFTTV 759

Query: 693 EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHD 752
           E L  E+ WYCP CK+ + A+KKLDLW LPE+L+IHLKRFSY++  + KL+T V FPI D
Sbjct: 760 ETLEKENPWYCPSCKQHQLATKKLDLWMLPEILIIHLKRFSYTKFSREKLDTLVEFPIRD 819

Query: 753 FNLTKYVAN-KNSSRRQL--YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISP 809
            + +++V   +N S  +L  Y+L A++NHYGGM  GHYT      D  +W+ FDD+ +SP
Sbjct: 820 LDFSEFVIQPQNDSNPELYKYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYFDDNSVSP 879

Query: 810 INEDDVKSAAAYVLFYRR 827
           +NE+ ++S AAYVLFY+R
Sbjct: 880 VNENQIESKAAYVLFYQR 897


>gi|38197496|gb|AAH00350.4| USP11 protein, partial [Homo sapiens]
          Length = 921

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 295/918 (32%), Positives = 412/918 (44%), Gaps = 188/918 (20%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV        GD  S            S  P  I+N+ L  D           
Sbjct: 67  WYKQWEAYVQ------GGDQDS------------STFPGCINNATLFQDEI------NWR 102

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L+EG DY+LLP   W+ L SWYG   G P + RKVI     Q    VEVYP+ L L
Sbjct: 103 LKEGLVEGEDYVLLPAAAWHYLVSWYGLEHGQPPIERKVIELPNIQ---KVEVYPVEL-L 158

Query: 118 LVMPR--GECSTIRISKKETIGELHRRACSIFYLN-LEQICIWDYYGHRKHALMNDMDRT 174
           LV     G+  T++ S  ++IG + R A   F +   E   +W          + D   T
Sbjct: 159 LVRHNDLGKSHTVQFSHTDSIGLVLRTARERFLVEPQEDTRLWAKNSEGSLDRLYDTHIT 218

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS 234
           + DA ++  Q I++E                     KK                G W   
Sbjct: 219 VLDAALETGQLIIME-------------------TRKKD---------------GTWP-- 242

Query: 235 KGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCL 294
                  S+++    N  S  D D               G+ GL NLGNTCFMNSA+QCL
Sbjct: 243 -------SAQLHVMNNNMSEEDEDFK----------GQPGICGLTNLGNTCFMNSALQCL 285

Query: 295 VHTPEFARYFRED-YRREINWQNPLGMV-------------------------------- 321
            + P+   YF  + Y  E+N++NPLGM                                 
Sbjct: 286 SNVPQLTEYFLNNCYLEELNFRNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVG 345

Query: 322 ---------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHI 366
                          ELL+FLLDGLHEDLNRVK K Y++  DA GRPD+EVA E W NH 
Sbjct: 346 HFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVELCDAAGRPDQEVAQEAWQNHK 405

Query: 367 ARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSA 426
            RNDS+IVD   G +KSTLVCP C  VSVTFDPF YLS+PL  +  R + V     D   
Sbjct: 406 RRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSVPLLISHKRVLEVFFIPMDPRR 465

Query: 427 LPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTI 484
            P  + + VPK G+  DL   L     +   E + VA++ +H   +   L++PL   S+I
Sbjct: 466 KPEQHRLVVPKKGKISDLCVALSKHTGIS-PERMMVADVFSHRFYKLYQLEEPL---SSI 521

Query: 485 KDDDHLAAYRVPKLV------KKAVFLQLIHRLQEQEPGAAQTTSQWKA--YGTPLVSSI 536
            D D +  Y V   +      ++ + + +   L+E+ P      S +    +G PL+ S+
Sbjct: 522 LDRDDIFVYEVSGRIEAIEGSREDIVVPVY--LRERTPARDYNNSYYGLMLFGHPLLVSV 579

Query: 537 SRDDVISSGKIQSTVQRMLSPFLKKESLMHADSF-------------DPSSMVTTVDPSG 583
            RD     G     + R+     K  S    D                PS+  +  DP  
Sbjct: 580 PRDRFTWEGLYNVLMYRLSRYVTKPNSDDEDDGDEKEDDEEDKDDVPGPSTGGSLRDPEP 639

Query: 584 EAHSNSSSNIAKEDASSSKAVTLPNLP----------LQLVDESNVCFDLSVEGDKTIRI 633
           E    SS    +        +     P          LQ V+ +          D+T   
Sbjct: 640 EQAGPSSGVTNRCPFLLDNCLGTSQWPPRRRRKQLFTLQTVNSNGT-------SDRTTSP 692

Query: 634 PSSSTSIVVYVDWSQKLLEKYNTHF-LENLLEVFKNGPVTKKARTEPLSLYTCLEAFLRE 692
                   + +DW  ++ ++Y      E  ++    G V KKA   P+ L  C+E F   
Sbjct: 693 EEVHAQPYIAIDWEPEMKKRYYDEVEAEGYVKHDCVGYVMKKA---PVRLQECIELFTTV 749

Query: 693 EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHD 752
           E L  E+ WYCP CK+ + A+KKLDLW LPE+L+IHLKRFSY++  + KL+T V FPI D
Sbjct: 750 ETLEKENPWYCPSCKQHQLATKKLDLWMLPEILIIHLKRFSYTKFSREKLDTLVEFPIRD 809

Query: 753 FNLTKYVAN-KNSSRRQL--YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISP 809
            + +++V   +N S  +L  Y+L A++NHYGGM  GHYT      D  +W+ FDD+ +SP
Sbjct: 810 LDFSEFVIQPQNESNPELYKYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYFDDNSVSP 869

Query: 810 INEDDVKSAAAYVLFYRR 827
           +NE+ ++S AAYVLFY+R
Sbjct: 870 VNENQIESKAAYVLFYQR 887


>gi|156393804|ref|XP_001636517.1| predicted protein [Nematostella vectensis]
 gi|156223621|gb|EDO44454.1| predicted protein [Nematostella vectensis]
          Length = 1018

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 296/945 (31%), Positives = 447/945 (47%), Gaps = 186/945 (19%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  +V  D  +  G G             A   P  +DNS+L  D           
Sbjct: 51  WFKQWKKFVGFDSWDVYGAGE------------AVNNPGPLDNSNLFTDDRVT------- 91

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + D L++  DY L+P+  W++L SWYG       ++R+V+  G+      VEVY +  +L
Sbjct: 92  LKDHLIDELDYNLVPEAAWHKLVSWYGLVNDQQPISRQVVEHGMYVRHCKVEVYLMEFKL 151

Query: 118 LVMPRGE-CSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                 +   T + SK +TIG +     ++F +  E +  +W+ Y      L+       
Sbjct: 152 CENSDMDTVVTQQFSKGDTIGHIVSTMKNLFSIPEESETRLWNKYMSNTFELL------- 204

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
                                +N + S+QD G  +    ++++E         G W    
Sbjct: 205 ---------------------SNMEQSVQDAGLYQ--GQTLVIEQQNED----GSWQ--- 234

Query: 236 GTSRNHSSEISTSPNLASARDSD-------------------NTLGSSGVTTRGASVGLT 276
              +N  S  S+S   +S+ D+                    + L  +  + RG   GLT
Sbjct: 235 --RQNTRSSYSSSTITSSSADNGYSSSNNSSSYSGYGSGRYWSNLYDNKKSYRGTP-GLT 291

Query: 277 GLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV-------------- 321
           GL NLGNTCFMNS +QCL +T    +YF  ++Y  E+N  NPLGM               
Sbjct: 292 GLANLGNTCFMNSGLQCLSNTMTLTKYFLSKEYVDELNTDNPLGMKGEIAKAYADLLNQI 351

Query: 322 ---------------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKD 348
                                            ELLAFLLDGLHEDLNR+K KPYI+ +D
Sbjct: 352 WSGQSSSIAPRQFKMQVGRFAPQFSGYQQQDSHELLAFLLDGLHEDLNRIKMKPYIELRD 411

Query: 349 ADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQ 408
           ADGRPD+ VA E W NH  RNDSIIVD+  G +KSTLVCP CNK+SVTFDP  YLSLPL 
Sbjct: 412 ADGRPDQVVASEAWHNHRQRNDSIIVDIFHGLFKSTLVCPECNKISVTFDPLCYLSLPLP 471

Query: 409 ATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNH 468
               R +   +  ++    P  + +TVPK G   D+  +LG    + + ++L V ++ N+
Sbjct: 472 VKKERNIECFLIKNEPMEKPVQFKLTVPKMGSVADMCAILGKQAGVPK-DKLVVTDVYNN 530

Query: 469 SIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQL-IHRLQEQEPGAAQT--TSQW 525
              +   +   SL+TI D D +  Y V + V    +L L +++ ++    A+ T  +S  
Sbjct: 531 RFHKIFKNTE-SLTTIMDRDDIFIYEVSERVDNPEYLVLPVYQRKKGARLASYTYGSSSK 589

Query: 526 KAYGTPLVSSISRDDVISSGKIQSTVQRM----LSPFLKKESLMHADSFDPSSMVTTVD- 580
             +G PL+ S+ +  ++ S   +  + +M     +P  K + + + D     ++    D 
Sbjct: 590 VLFGIPLLISVPKKGLVYSELYKMCLNKMRRYVTAPEEKDDDVENGDDKTDKTVCNGPDV 649

Query: 581 -----PSGEAHSNSSSNIAKE--------DASSSKAVTLPNLPLQLVDESNVC------- 620
                 SG++ + S   + K         D    KA T    P     ++ V        
Sbjct: 650 EMNEAESGDSDAESDEELEKAYKNVSVNGDEEEDKADTDEETPTVTNPKTEVTEKPTKKT 709

Query: 621 --FDLSV-------------EGDKTIRIPSSSTSIVVYVDWSQKLLEKY-NTHFLENLLE 664
             F L++             +  K +++   S    + +DW+ +  EKY NT+  E   E
Sbjct: 710 RLFSLTLVNMYGSTDMHALADDGKPLKLSHQS---YLSLDWTTEKKEKYYNTNLSE---E 763

Query: 665 VFKNGPVTKK--ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLP 722
             ++  V +K   R   + L  C++ FL  E L   D WYCPQCK+ +QASKK DLW LP
Sbjct: 764 TEEDESVARKPTQRKSVVQLNDCIQLFLTREKLGANDPWYCPQCKKHQQASKKFDLWCLP 823

Query: 723 EVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGM 782
           EVLVIHLKRFSY+   + K++T VNFP+   +++ YV  K+     LY+L  ++NHYGGM
Sbjct: 824 EVLVIHLKRFSYTSLWRDKIDTLVNFPLCGLDMSDYVIGKDGP-PPLYDLIGVSNHYGGM 882

Query: 783 GSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           G GHYTA+ +  +++ WY++DDS +S INE+ + S AAYVLFY+R
Sbjct: 883 GGGHYTAYCRNHEDDHWYSYDDSSVSQINEEQIVSKAAYVLFYKR 927


>gi|109130539|ref|XP_001093504.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 11 isoform 4
           [Macaca mulatta]
          Length = 963

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 296/919 (32%), Positives = 412/919 (44%), Gaps = 190/919 (20%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV        GD  S            S  P  I+N+ L  D           
Sbjct: 109 WYKQWEAYVQ------GGDQDS------------STFPGCINNATLFQDEINW------R 144

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L+EG DY+LLP   W+ L SWYG   G P + RKVI     Q    VEVYP+ L L
Sbjct: 145 LKEGLVEGEDYVLLPAAAWHYLVSWYGLEHGQPPIERKVIELPNIQK---VEVYPVEL-L 200

Query: 118 LVMPR--GECSTIRISKKETIGELHRRACSIFYLN-LEQICIWDYYGHRKHALMNDMDRT 174
           LV     G   T++ S  ++IG + R A   F +   E   +W          + D   T
Sbjct: 201 LVRHNDLGRSHTVQFSHTDSIGMVLRTARERFLVEPQEDTRLWAKNSEGSLDRLYDTHIT 260

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGW-SA 233
           + DA ++  Q I++E                     KK                G W SA
Sbjct: 261 VLDAALETGQLIIME-------------------TRKKD---------------GTWPSA 286

Query: 234 SKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQC 293
                  H SE           + ++  G  G+          GL NLGNTCFMNSA+QC
Sbjct: 287 QLHVMNKHMSE-----------EDEDFKGQPGIC---------GLTNLGNTCFMNSALQC 326

Query: 294 LVHTPEFARYFRED-YRREINWQNPLGMV------------------------------- 321
           L + P+   YF  + Y  E+N++NPLGM                                
Sbjct: 327 LSNVPQLTEYFLNNCYLEELNFRNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKV 386

Query: 322 ----------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANH 365
                           ELL+FLLDGLHEDLNRVK K Y++  DA GRPD+EVA E W NH
Sbjct: 387 GHFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVELCDAAGRPDQEVAQEAWQNH 446

Query: 366 IARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGS 425
             RNDS+IVD   G +KSTLVCP C  VSVTFDPF YLS+PL  +  R + V     D  
Sbjct: 447 KRRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSVPLPISHKRVLEVFFIPMDPR 506

Query: 426 ALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLST 483
             P  + + VPK G+  DL   L     +   E + VA++ +H   +   L++PL   S+
Sbjct: 507 RKPEQHRLVVPKKGKISDLCVALSKHTGIS-PERMMVADVFSHRFYKLYQLEEPL---SS 562

Query: 484 IKDDDHLAAYRVPKLV------KKAVFLQLIHRLQEQEPGAAQTTSQWKA--YGTPLVSS 535
           I D D +  Y V   +      ++ + + +   L+E+ P      S +    +G PL+ S
Sbjct: 563 ILDRDDIFVYEVSGRIEAIEGSREDIVVPVY--LRERTPARDYNNSYYGLMLFGHPLLVS 620

Query: 536 ISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSF-------------DPSSMVTTVDPS 582
           + RD     G     + R+     K  S    D                PS+  +  DP 
Sbjct: 621 VPRDRFTWEGLYNVLMYRLSRYVSKPNSDDEDDGDEKEDDEEDKDDVPGPSTGGSLRDPE 680

Query: 583 GEAHSNSSSNIAKEDASSSKAVTLPNLP----------LQLVDESNVCFDLSVEGDKTIR 632
            E    SS    +        +     P          LQ V+ +          D+T  
Sbjct: 681 PEQAGPSSGVTNRCPFLLDNCLGTSQWPPRRRRKQLFTLQTVNSNGT-------SDRTTS 733

Query: 633 IPSSSTSIVVYVDWSQKLLEKYNTHF-LENLLEVFKNGPVTKKARTEPLSLYTCLEAFLR 691
                    + +DW  ++ ++Y      E  ++    G V KKA   P+ L  C+E F  
Sbjct: 734 PEEVHAQPYIAIDWEPEMKKRYYDEIEAEGYVKHDCVGYVMKKA---PVRLQECIELFTT 790

Query: 692 EEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIH 751
            E L  E+ WYCP CK+ + A+KKLDLW LPE+L+IHLKRFSY++  + KL+T V FPI 
Sbjct: 791 VETLEKENPWYCPSCKQHQLATKKLDLWMLPEILIIHLKRFSYTKFSREKLDTLVEFPIR 850

Query: 752 DFNLTKYVAN-KNSSRRQL--YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHIS 808
           D + +++V   +N S  +L  Y+L A++NHYGGM  GHYT      D  +W+ FDD+ +S
Sbjct: 851 DLDFSEFVIQPQNESNPELYKYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYFDDNSVS 910

Query: 809 PINEDDVKSAAAYVLFYRR 827
           P+NE+ ++S AAYVLFY+R
Sbjct: 911 PVNENQIESKAAYVLFYQR 929


>gi|380798193|gb|AFE70972.1| ubiquitin carboxyl-terminal hydrolase 11, partial [Macaca mulatta]
          Length = 904

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 296/919 (32%), Positives = 412/919 (44%), Gaps = 190/919 (20%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV        GD  S            S  P  I+N+ L  D           
Sbjct: 50  WYKQWEAYVQ------GGDQDS------------STFPGCINNATLFQDEINW------R 85

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L+EG DY+LLP   W+ L SWYG   G P + RKVI     Q    VEVYP+ L L
Sbjct: 86  LKEGLVEGEDYVLLPAAAWHYLVSWYGLEHGQPPIERKVIELPNIQK---VEVYPVEL-L 141

Query: 118 LVMPR--GECSTIRISKKETIGELHRRACSIFYLN-LEQICIWDYYGHRKHALMNDMDRT 174
           LV     G   T++ S  ++IG + R A   F +   E   +W          + D   T
Sbjct: 142 LVRHNDLGRSHTVQFSHTDSIGMVLRTARERFLVEPQEDTRLWAKNSEGSLDRLYDTHIT 201

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGW-SA 233
           + DA ++  Q I++E                     KK                G W SA
Sbjct: 202 VLDAALETGQLIIMET-------------------RKKD---------------GTWPSA 227

Query: 234 SKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQC 293
                  H SE           + ++  G  G+          GL NLGNTCFMNSA+QC
Sbjct: 228 QLHVMNKHMSE-----------EDEDFKGQPGIC---------GLTNLGNTCFMNSALQC 267

Query: 294 LVHTPEFARYFRED-YRREINWQNPLGMV------------------------------- 321
           L + P+   YF  + Y  E+N++NPLGM                                
Sbjct: 268 LSNVPQLTEYFLNNCYLEELNFRNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKV 327

Query: 322 ----------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANH 365
                           ELL+FLLDGLHEDLNRVK K Y++  DA GRPD+EVA E W NH
Sbjct: 328 GHFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVELCDAAGRPDQEVAQEAWQNH 387

Query: 366 IARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGS 425
             RNDS+IVD   G +KSTLVCP C  VSVTFDPF YLS+PL  +  R + V     D  
Sbjct: 388 KRRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSVPLPISHKRVLEVFFIPMDPR 447

Query: 426 ALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLST 483
             P  + + VPK G+  DL   L     +   E + VA++ +H   +   L++PL   S+
Sbjct: 448 RKPEQHRLVVPKKGKISDLCVALSKHTGIS-PERMMVADVFSHRFYKLYQLEEPL---SS 503

Query: 484 IKDDDHLAAYRVPKLV------KKAVFLQLIHRLQEQEPGAAQTTSQWKA--YGTPLVSS 535
           I D D +  Y V   +      ++ + + +   L+E+ P      S +    +G PL+ S
Sbjct: 504 ILDRDDIFVYEVSGRIEAIEGSREDIVVPVY--LRERTPARDYNNSYYGLMLFGHPLLVS 561

Query: 536 ISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSF-------------DPSSMVTTVDPS 582
           + RD     G     + R+     K  S    D                PS+  +  DP 
Sbjct: 562 VPRDRFTWEGLYNVLMYRLSRYVSKPNSDDEDDGDEKEDDEEDKDDVPGPSTGGSLRDPE 621

Query: 583 GEAHSNSSSNIAKEDASSSKAVTLPNLP----------LQLVDESNVCFDLSVEGDKTIR 632
            E    SS    +        +     P          LQ V+ +          D+T  
Sbjct: 622 PEQAGPSSGVTNRCPFLLDNCLGTSQWPPRRRRKQLFTLQTVNSNGT-------SDRTTS 674

Query: 633 IPSSSTSIVVYVDWSQKLLEKYNTHF-LENLLEVFKNGPVTKKARTEPLSLYTCLEAFLR 691
                    + +DW  ++ ++Y      E  ++    G V KKA   P+ L  C+E F  
Sbjct: 675 PEEVHAQPYIAIDWEPEMKKRYYDEIEAEGYVKHDCVGYVMKKA---PVRLQECIELFTT 731

Query: 692 EEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIH 751
            E L  E+ WYCP CK+ + A+KKLDLW LPE+L+IHLKRFSY++  + KL+T V FPI 
Sbjct: 732 VETLEKENPWYCPSCKQHQLATKKLDLWMLPEILIIHLKRFSYTKFSREKLDTLVEFPIR 791

Query: 752 DFNLTKYVAN-KNSSRRQL--YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHIS 808
           D + +++V   +N S  +L  Y+L A++NHYGGM  GHYT      D  +W+ FDD+ +S
Sbjct: 792 DLDFSEFVIQPQNESNPELYKYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYFDDNSVS 851

Query: 809 PINEDDVKSAAAYVLFYRR 827
           P+NE+ ++S AAYVLFY+R
Sbjct: 852 PVNENQIESKAAYVLFYQR 870


>gi|224073732|ref|XP_002335895.1| predicted protein [Populus trichocarpa]
 gi|222836241|gb|EEE74662.1| predicted protein [Populus trichocarpa]
          Length = 256

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 182/245 (74%), Positives = 206/245 (84%), Gaps = 5/245 (2%)

Query: 554 MLSPFLKKESLMHADSFDPSSMVTTVD-----PSGEAHSNSSSNIAKEDASSSKAVTLPN 608
           MLSP L+ ESL  AD  +P S +   D      S EA +N  S+   +D+S S+AVTL  
Sbjct: 1   MLSPLLRSESLRQADIPEPCSSLAASDMCHHSSSDEACTNPLSDSMNKDSSGSRAVTLFK 60

Query: 609 LPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKN 668
           LPLQLV+ESN C DLSV  DKTI++ S+STS++VYVDWSQ+LLEKY+ H+LENL EVFK 
Sbjct: 61  LPLQLVEESNACIDLSVGEDKTIKLSSTSTSMLVYVDWSQELLEKYDIHYLENLPEVFKY 120

Query: 669 GPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIH 728
           GPV KKARTEPLSLYTCLE FLREEPLVPEDMWYCP+CKERRQASKKLDLWRLPEVLVIH
Sbjct: 121 GPVNKKARTEPLSLYTCLEGFLREEPLVPEDMWYCPKCKERRQASKKLDLWRLPEVLVIH 180

Query: 729 LKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYT 788
           LKRFSYSRSMKHKLETFVNFPI DF+LT Y+ANKN+++RQLYELYALTNHYGGMGSGHYT
Sbjct: 181 LKRFSYSRSMKHKLETFVNFPIRDFDLTNYIANKNNTQRQLYELYALTNHYGGMGSGHYT 240

Query: 789 AHIKL 793
           AHIK+
Sbjct: 241 AHIKV 245


>gi|443694485|gb|ELT95606.1| hypothetical protein CAPTEDRAFT_180316 [Capitella teleta]
          Length = 938

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 291/915 (31%), Positives = 438/915 (47%), Gaps = 148/915 (16%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +             S     S  P  IDNS L+     E  G    
Sbjct: 40  WFKQWKKYVGYDNWDV------------SLAGEESANPGPIDNSPLM-----EANGTTDT 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + D L++  D++L+P+E W +L SWYG   G     RKVI  G+      VEVY + L+L
Sbjct: 83  LKDHLMDELDFVLVPEEAWQKLTSWYGTVAGQEPFPRKVIEQGMFTKHCKVEVYLMDLKL 142

Query: 118 LVMPRGECSTIRI-SKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                 +   +R+ S+ + +  +      +F +  + +I +W+ Y      L++      
Sbjct: 143 CDYDDLKKIHVRLFSRADPVEVIKTTMRGVFSIEDDVEIRLWNKYTTSTFELLD------ 196

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWS--- 232
                           D  NG     SIQD G    +   ++VE  KS     G W    
Sbjct: 197 ----------------DKGNGY----SIQDAGLCPGQV--IVVERKKSD----GTWPRQV 230

Query: 233 ASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGA---------------SVGLTG 277
            SK  +    S IS S     A  S ++  S+  +  G+               + GL G
Sbjct: 231 PSKNLTSFSVSSISGSSTSFGAGGSSSSSISNYESNSGSYPSSYFNSSYESNTRNRGLCG 290

Query: 278 LLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM---------------- 320
           L NLGNTCFMNSAIQCL +      Y   D ++ E+N  NPLGM                
Sbjct: 291 LSNLGNTCFMNSAIQCLSNVHHLTEYMLSDRWQGELNTDNPLGMRGEIATTFAELIKNMW 350

Query: 321 -------------------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDA 349
                                           EL+AFLLDGLHEDLNR+KHKPYI+ KDA
Sbjct: 351 SGKFTYTVPRNFKVAVGRFQPQFSGYQQQDSQELMAFLLDGLHEDLNRIKHKPYIEVKDA 410

Query: 350 DGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQA 409
           D RPD  +A E W N++ RNDSIIVD+  G  KSTL+CP CNKVSVTFDPF YLSLPL  
Sbjct: 411 DDRPDHVIAKEAWENYLRRNDSIIVDIFHGLLKSTLICPACNKVSVTFDPFCYLSLPLPI 470

Query: 410 TTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHS 469
              R + V   + D +   + Y VTVPK G   D+ + L  + S+  ++ + V ++ NH 
Sbjct: 471 KKERQIEVFFVSGDPAKKLTQYKVTVPKLGTVNDICKALSTLTSVP-ADHMMVTDVYNHR 529

Query: 470 IQRFLDDPLISLSTIKDDDHLAAYRVP-KLVKKAVFLQLIHRLQEQEPGAAQT--TSQWK 526
             +    P   L+ I D D +  +++P K    +    +   ++E+ P ++++   S  +
Sbjct: 530 FHKIF-PPEDGLNHILDRDDIFVHQIPTKNTNDSDHTIIPVYMREKNPHSSKSYNNSSTQ 588

Query: 527 AYGTPLVSSISRDDVISSGKIQSTVQRM----LSPFLKKE--SLMHADSFDPSSMVTTVD 580
            +G PL+ ++ + +       Q+ +++M     SP  + E    +   S + S++   ++
Sbjct: 589 LFGQPLLVAVPKKNCSYDMLYQAVLKKMSRYVTSPAEQDEWWKTVSNGSSEESNLNGEME 648

Query: 581 PSGEAHSNS------SSNIAKEDASSSKAVTLPNL-PLQLVDESNVCFDLSVEGD-KTIR 632
            + EA ++S      +S + +E+A   ++   P L     V+        S+  D K ++
Sbjct: 649 VNDEADNSSEDSIQEASEVIQEEADDKQSSRAPRLFTFHFVNSYGSTEMQSIRDDGKMLK 708

Query: 633 IPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPV--TKKARTEPLSLYTCLEAFL 690
            PS      + +DW  K  + +   + E   E F++ P    K  +   + L  CL+ F 
Sbjct: 709 FPS---RCYLAIDWHPKAKQMF---YDEKAAEDFESDPSMNAKTVQKRHVQLTECLDLFT 762

Query: 691 REEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPI 750
             E L  +D+WYCPQCK+ RQA+KK D+W+LP VLV+HLKRFS ++  + KL+++V FP 
Sbjct: 763 TTEQLGEQDLWYCPQCKKHRQATKKFDVWQLPRVLVVHLKRFSCNKYWRDKLDSYVEFPT 822

Query: 751 HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPI 810
               L K++ N+       Y+L +++NHYGGMG GHYTA+ K  D   WY+FDDS ++  
Sbjct: 823 RGLCLKKWLLNQ-CHGSATYDLISVSNHYGGMGGGHYTAYGKNKDTGEWYHFDDSSVTAT 881

Query: 811 NEDDVKSAAAYVLFY 825
           +ED V + AAYVL Y
Sbjct: 882 SEDSVVTKAAYVLVY 896


>gi|405960113|gb|EKC26060.1| Ubiquitin carboxyl-terminal hydrolase 15 [Crassostrea gigas]
          Length = 923

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 286/930 (30%), Positives = 433/930 (46%), Gaps = 170/930 (18%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  + T  G   +             P  +DNS L+ +   E       
Sbjct: 33  WFKQWKKYVGYDDWDRTFVGEKDV------------YPGPVDNSPLLKEGKEE------- 73

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP+E W ++   YG   G   + RKVI  G+      VEVY + ++L
Sbjct: 74  LKEHLIDELDYILLPKEGWEKIVESYGITEGQTPIKRKVIEQGMFVKHCKVEVYLMDVKL 133

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYL-NLEQICIWDYYGHRKHALMNDMDRTL 175
                  E  T+ +S+ +TI ++ +     F + + +++ +W+ Y    +  +N  ++TL
Sbjct: 134 CENSNLSESVTLSLSRCDTIEDVEKVMRKQFDISDDKEVRLWNKYMSNTYEHLNKPEQTL 193

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            +A +   Q I++E   N +GT                                 W   +
Sbjct: 194 QEAGLYSGQIIVIE-QKNEDGT---------------------------------WP--R 217

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
            T R   + IS + N  S  +SD   G  G      + GL GL NLGNTCFMNSAIQC+ 
Sbjct: 218 QTKREADTSISYTKNYNSYSNSDYDSGKGGT----VAPGLCGLSNLGNTCFMNSAIQCMS 273

Query: 296 HTPEFARYFRED-YRREINWQNPLGM---------------------------------- 320
           + P+   Y   D ++ EIN  NPLGM                                  
Sbjct: 274 NVPKLTNYLLGDRWKEEINEDNPLGMGGEIARSYTELIKTMWSGKYSYTVPRYFKVQVGK 333

Query: 321 -------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELLAFLLDGLHEDLNR+K KPY++ +D++ R D+EVA E W N+  
Sbjct: 334 FAPQFSGYQQQDSQELLAFLLDGLHEDLNRIKKKPYVEIQDSNNRSDQEVAKESWENYEK 393

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDS+IVD   G  KST+ CP C KVSVTFDPF YLSLP+     R + V          
Sbjct: 394 RNDSVIVDTFHGLLKSTVNCPECTKVSVTFDPFCYLSLPMPIKKERLLEVFWIPLSPEKK 453

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTIKD 486
           P    V VPK G   DL   +G + S    +++ V ++ NH   + FL    I  S+I D
Sbjct: 454 PIQMRVLVPKMGNIGDLCTAVGALLS-ADPQKMVVTDVYNHRFHKIFLSSEQI--SSILD 510

Query: 487 DDHLAAYRVP-KLVKKAVFLQLIHRLQEQEPGAAQTTSQWKA-----YGTPLVSSISRDD 540
            D +  Y VP    +++  + ++     ++  A + +S ++      +G P++ ++    
Sbjct: 511 RDDIFIYEVPVSTTEESSDIIVVPVYMREKRWANKCSSNYQMSSLQLFGQPMLLALPSRM 570

Query: 541 VISSGKIQSTVQRM-----------------------------------LSPFLKKESLM 565
             S    ++ +QRM                                    +  ++KE   
Sbjct: 571 CTSEILYRAFLQRMSRYIQVPAKDDIWWKDDEEEEQAEEDCETDNTSETCNGTVEKEGQE 630

Query: 566 HADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDA--SSSKAVTLPNLPLQLVDESNVCFDL 623
           + +  D  +  ++ D + +  +NSS++  + D   +++K    P  P  LV  + V    
Sbjct: 631 NGEVLDMETSCSSTDSNSKCCNNSSTDPPESDGIVTNNKPQKTPQ-PKHLVKFTMVNSYG 689

Query: 624 SVEGDKTIRIPSS----STSIVVYVDWSQKLLEKYNTHFLENLLEVFKN--GPVTKKART 677
           S E D  I+   S    ++   +  DW     EK+   +LE   E F+       K  + 
Sbjct: 690 SAEMDYKIKEDGSPLKLTSRTYIAADWHPVAKEKF---YLEKTAEEFEQHESMKVKAQKK 746

Query: 678 EPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRS 737
           + + L  CLE F + E L   D+WYCPQCK+ + A+KK DLW LP+VL++HLKRFSY+R 
Sbjct: 747 QVIQLDNCLELFTKSEQLGENDLWYCPQCKKHQPATKKFDLWSLPDVLIVHLKRFSYNRF 806

Query: 738 MKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDEN 797
            + K++  V FP    NL KY+ N +      Y+L A++NHYGG+G GHYTA+ K  D+ 
Sbjct: 807 YRDKIDALVEFPARGLNLKKYIINPHHGPV-TYDLIAVSNHYGGLGGGHYTAYAKNKDDG 865

Query: 798 RWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            WY FDDS ++  +EDDV S AAYVL Y++
Sbjct: 866 EWYYFDDSSVTSSSEDDVVSKAAYVLVYQK 895


>gi|403291354|ref|XP_003936760.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Saimiri
           boliviensis boliviensis]
          Length = 941

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 281/828 (33%), Positives = 403/828 (48%), Gaps = 116/828 (14%)

Query: 93  ARKVISSGLSQTELAVEVYPLRLQLLVM--PRGECSTIRISKKETIGELHRRACSIFYLN 150
            RKV+  GL      VEVY L L+L     P    S    SK +TI  + +    +F + 
Sbjct: 96  GRKVVEHGLFVKHCKVEVYLLELKLCENSDPTNVLS-CHFSKADTIATIEKEMRKLFNIP 154

Query: 151 LE-QICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQD---- 205
            E +  +W+ Y    +  ++ +D T+ DA +   Q +++E   N +GT  + ++Q     
Sbjct: 155 AERETRLWNKYMSNTYEQLSKLDNTVQDAGLYQGQVLVIEP-QNEDGTWPRQTLQSISST 213

Query: 206 ---NGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLG 262
                F     SS     S S+  IA G S S  TS  HSS +S   +  SA  +     
Sbjct: 214 APSRNFTTSPKSSASPYSSVSASPIANGDSTS--TSGMHSSGVSRGGSGFSASYNCQEPP 271

Query: 263 SSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV 321
           SS +       GL GL NLGNTCFMNSA+QCL +T     YF +++Y  EIN  NPLGM 
Sbjct: 272 SSHIQP-----GLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRINPLGMK 326

Query: 322 -----------------------------------------------ELLAFLLDGLHED 334
                                                          ELLAFLLDGLHED
Sbjct: 327 GEIAEAYAELIKQMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHED 386

Query: 335 LNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVS 394
           LNRVK KPY++ KDA+GRPD  VA E W NH  RNDS+IVD   G +KSTLVCP C KVS
Sbjct: 387 LNRVKKKPYLELKDANGRPDSVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECFKVS 446

Query: 395 VTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSL 454
           VTFDPF YL+LPL     R M V +  +D    P+ Y VTVP  G   DL + L  +  +
Sbjct: 447 VTFDPFCYLTLPLPLKKDRVMEVFLVPADPHCRPTQYRVTVPLMGAVSDLCEALSRLSGI 506

Query: 455 KQSEELKVAEIQNHSIQRF--LDDPLISLSTIKDDDHLAAYRVPKL-VKKAVFLQLIHRL 511
             +E + V ++ NH   +   +D+    L+ I   D +  Y V    V  +  + L    
Sbjct: 507 S-TENMVVTDVYNHRFHKIFQMDE---GLNHIMPRDDIFVYEVCSTSVDGSECVTLPVYF 562

Query: 512 QEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKK--ESLMHADS 569
           +E++   + T+S    YG PL+ S+ +  +      Q+   R +S ++K+       +  
Sbjct: 563 RERKSRPSSTSSGAALYGQPLLLSVPKQKLTLESLYQAVCDR-ISRYVKQPLPDEFGSSP 621

Query: 570 FDPSSMVTT----------------------VDPSGEAHSNSSSNIAKEDASSSKAVTLP 607
            +P +   +                      ++  G       ++ ++      K    P
Sbjct: 622 LEPGTCSGSRNSCEGEDEEEMEHQEEGNEQLLETEGSGEDELGNDPSETTQKKIKGQPCP 681

Query: 608 N--LPLQLVDESNVCFDLSVEGD-KTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLE 664
                  LV+        S+  D K +++ S ST   + +DW     E  + ++ E   E
Sbjct: 682 KRLFTFSLVNSYGTADINSLATDGKLLKLNSRST---LAIDWDS---ETRSLYYDEQESE 735

Query: 665 VFKN-----GPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLW 719
            ++       P  KK  T  ++L  C+E F   E L   D WYCP CK+ +QA+KK DLW
Sbjct: 736 AYEKHVSMLQPQKKKKTT--VALRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLW 793

Query: 720 RLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHY 779
            LP++LV+HLKRFSY+R  + KL+T V FPI   N++++V N+ S+R  +Y+L A++NHY
Sbjct: 794 SLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNQ-SARPYVYDLIAVSNHY 852

Query: 780 GGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           G MG GHYTA+ K     +WY FDDS++S  +ED + + AAYVLFY+R
Sbjct: 853 GAMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQR 900


>gi|402909992|ref|XP_003917678.1| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal
           hydrolase 11 [Papio anubis]
          Length = 963

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 293/918 (31%), Positives = 410/918 (44%), Gaps = 188/918 (20%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV        GD  S            S  P  I+N+ L  D           
Sbjct: 109 WYKQWEAYVQ------GGDQDS------------STFPGCINNATLFQDEINW------R 144

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L+EG DY+LLP   W+ L SWYG   G P + RKVI     Q    VEVYP+ L L
Sbjct: 145 LKEGLVEGEDYVLLPAAAWHYLVSWYGLEHGQPPIERKVIELPNIQK---VEVYPVEL-L 200

Query: 118 LVMPR--GECSTIRISKKETIGELHRRACSIFYLN-LEQICIWDYYGHRKHALMNDMDRT 174
           LV     G   T++ S  ++IG + R A   F +   E   +W          + D   T
Sbjct: 201 LVRHNDLGRSHTVQFSHTDSIGMVLRTARERFLVEPQEDTRLWAKNSEGSLDRLYDTHIT 260

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS 234
           + DA ++  Q I                              ++E  K      G W ++
Sbjct: 261 VLDAALETGQLI------------------------------IMETRKKD----GTWPSA 286

Query: 235 KGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCL 294
           +    N +          S  D D               G+ GL NLGNTCFMNSA+QCL
Sbjct: 287 QLHVMNKN---------MSEEDEDFK----------GQPGICGLTNLGNTCFMNSALQCL 327

Query: 295 VHTPEFARYFRED-YRREINWQNPLGMV-------------------------------- 321
            + P+   YF  + Y  E+N++NPLGM                                 
Sbjct: 328 SNVPQLTEYFLNNCYLEELNFRNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVG 387

Query: 322 ---------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHI 366
                          ELL+FLLDGLHEDLNRVK K Y++  DA GRPD+EVA E W NH 
Sbjct: 388 HFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVELCDAAGRPDQEVAQEAWQNHK 447

Query: 367 ARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSA 426
            RNDS+IVD   G +KSTLVCP C  VSVTFDPF YLS+PL  +  R + V     D   
Sbjct: 448 RRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSVPLPISHKRVLEVFFIPMDPRR 507

Query: 427 LPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTI 484
            P  + + VPK G+  DL   L     +   E + VA++ +H   +   L++PL   S+I
Sbjct: 508 KPEQHRLVVPKKGKISDLCVALSKHTGIS-PERMMVADVFSHRFYKLYQLEEPL---SSI 563

Query: 485 KDDDHLAAYRVPKLV------KKAVFLQLIHRLQEQEPGAAQTTSQWKA--YGTPLVSSI 536
            D D +  Y V   +      ++ + + +   L+E+ P      S +    +G PL+ S+
Sbjct: 564 LDRDDIFVYEVSGRIEAIEGSREDIVVPVY--LRERTPARDYNNSYYGLMLFGHPLLVSV 621

Query: 537 SRDDVISSGKIQSTVQRMLSPFLKKESLMHADSF-------------DPSSMVTTVDPSG 583
            RD     G     + R+     K  S    D                PS+  +  DP  
Sbjct: 622 PRDRFTWEGLYNVLMYRLSRYVSKPNSDDEDDGDEKEDDEEDKDDVPGPSTGGSLRDPEP 681

Query: 584 EAHSNSSSNIAKEDASSSKAVTLPNLP----------LQLVDESNVCFDLSVEGDKTIRI 633
           E    SS    +        +     P          LQ V+ +          D+T   
Sbjct: 682 EQAGPSSGVTNRCPFLLDNCLGTSQWPPRRRRKQLFTLQTVNSNGT-------SDRTTSP 734

Query: 634 PSSSTSIVVYVDWSQKLLEKYNTHF-LENLLEVFKNGPVTKKARTEPLSLYTCLEAFLRE 692
                   + +DW  ++ ++Y      E  ++    G V KKA   P+ L  C+E F   
Sbjct: 735 EEVHAQPYIAIDWEPEMKKRYYDEVEAEGYVKHDCVGYVMKKA---PVRLQECIELFTTV 791

Query: 693 EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHD 752
           E L  E+ WYCP CK+ + A+KKLDLW LPE+L+IHLKRFSY++  + KL+T V FPI D
Sbjct: 792 ETLEKENPWYCPSCKQHQLATKKLDLWMLPEILIIHLKRFSYTKFSREKLDTLVEFPIRD 851

Query: 753 FNLTKYVAN-KNSSRRQL--YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISP 809
            + +++V   +N S  +L  Y+L A++NHYGGM  GHYT      D  +W+ FDD+ +SP
Sbjct: 852 LDFSEFVIQPQNESNPELYKYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYFDDNSVSP 911

Query: 810 INEDDVKSAAAYVLFYRR 827
           +NE+ ++S AAYVLFY+R
Sbjct: 912 VNENQIESKAAYVLFYQR 929


>gi|327265717|ref|XP_003217654.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4-like [Anolis
           carolinensis]
          Length = 908

 Score =  370 bits (951), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 286/887 (32%), Positives = 431/887 (48%), Gaps = 122/887 (13%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G   L             P  IDNS L  D+  +       
Sbjct: 56  WFKQWKKYVGFDSWDLYNVGEPNL------------YPGPIDNSGLFADSETQT------ 97

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 98  LKEHLIDELDYVLVPTEAWNKLVNWYGCIEGQKPILRKVVEYGLFVKHCKVEVYLLELKL 157

Query: 118 LVMPRGECSTIRIS----KKETIGELHRRACSIFYL-NLEQICIWDYYGHRKHALMNDMD 172
               +   ST  +S    K +T+  + +     F + + ++I +W  Y    +  ++ +D
Sbjct: 158 C---QNNDSTNLVSSYFSKADTVATIEKEMRKQFNIPDGKEIRLWSRYMSNTYEQLSKLD 214

Query: 173 RTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWS 232
            T+ DA +   Q +L+EV  N +G+  + S Q                +KSS + +   +
Sbjct: 215 STIQDAGLYQGQVVLIEV-KNEDGSWPRQSSQ----------------TKSSTATSRNLA 257

Query: 233 ASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASV-----------------GL 275
            S  +S    S +  S  + +  DS+N+ G +    +G S                  GL
Sbjct: 258 TSSKSSAGSCSSVVASSAITNG-DSNNSYGLNSSHGKGGSSFSCNFYNNRESSPQSQPGL 316

Query: 276 TGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMVELLAFLLDGLHED 334
            GL NLGNTCFMNSA+QCL +TP    YF ED Y  EIN +NPLGM   +A     L + 
Sbjct: 317 CGLSNLGNTCFMNSALQCLSNTPPLTEYFLEDEYEAEINQENPLGMRGEIAEAYAELIKQ 376

Query: 335 L--NRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNK 392
           +   R  H           R  + VA E W NH  RNDSIIVD+  G +KSTLVCP C+K
Sbjct: 377 MWSGRYTH--------VAPRIFKVVAKEAWENHRLRNDSIIVDIFHGLFKSTLVCPKCSK 428

Query: 393 VSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNIC 452
           VSVTFDPF YL+LPL     RTM V    +D    PS   V VP  G   DL   L  + 
Sbjct: 429 VSVTFDPFCYLTLPLPMKKDRTMEVLFVFADPQRKPSQCRVVVPMMGGVTDLCDALSQLS 488

Query: 453 SLKQSEELKVAEIQNHSIQRF--LDDPLISLSTIKDDDHLAAYRVPKLVKK-AVFLQLIH 509
            +  +E + V ++ NH   +   +D+    LS I   D++  Y + K  +  A  + L  
Sbjct: 489 GIP-AENMVVTDVYNHRFHKIFQMDE---GLSNIMPKDNIFVYEISKPAEDGAECVTLSI 544

Query: 510 RLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKES------ 563
             +E++   +  T     YG PL+ ++ +   ++   + S +   +  ++K  S      
Sbjct: 545 YFREKKARQSSATPATVLYGQPLLIAVPKHK-LTLDYLYSVILERIGRYVKIPSKEDCPD 603

Query: 564 -LMHADSFDPSSMVTTVDPSGEAHSN----SSSNIAKEDASSSKAVTLPNLPLQLVDESN 618
                ++ + S+ V+  +     H N    +   I + DAS S+  T      + +    
Sbjct: 604 VCSDNETCNGSNSVSEGEVEEMEHQNGEEENKEKILETDASQSEDGTQVESGKEGLHHRK 663

Query: 619 VCFDLSV--------------EGDKTIRIPSSSTSIVVYVDW---SQKLL-EKYNTHFLE 660
             F  S+              EG K +++ S +T   V +DW   ++KLL +++     E
Sbjct: 664 RLFTFSLVNSYGTSEINSLPTEG-KILKLSSHAT---VAIDWDSDTRKLLFDEHEAQAFE 719

Query: 661 NLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWR 720
               +F+      + R   ++L  C+E F   E L   D WYCP CK+ +QA+KK DLW 
Sbjct: 720 KHCSMFQ-----PQKRKTAVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWS 774

Query: 721 LPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYG 780
           LP +LV+HLKRFSY+R  + KL+T V FPI D N++++V +  +S   +Y+L A++NHYG
Sbjct: 775 LPRILVVHLKRFSYNRYWRDKLDTVVEFPIRDLNMSEFVCDPAAS-PYVYDLIAVSNHYG 833

Query: 781 GMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           GMG GHYTA+ K     +WY FDDS +SP +E+ + + AAYVLFY+R
Sbjct: 834 GMGVGHYTAYAKNKINGKWYYFDDSSVSPASEEQIVTKAAYVLFYQR 880


>gi|395854375|ref|XP_003799671.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 11 [Otolemur
           garnettii]
          Length = 915

 Score =  370 bits (950), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 292/916 (31%), Positives = 420/916 (45%), Gaps = 184/916 (20%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV        GD  S            S  P  I+N++L  D  +        
Sbjct: 61  WYKQWEVYVQ------GGDQDS------------STFPGYINNAELFEDQISW------R 96

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L EG+DY+LLP   W+ L SWYG   G P + RKVI   L  T L VEVYP+ L L
Sbjct: 97  LKEGLEEGKDYVLLPAIAWHYLVSWYGLEHGQPPIERKVIE--LPST-LMVEVYPVELLL 153

Query: 118 LVMPRGECS-TIRISKKETIGELHRRACSIFYLN-LEQICIWDYYGHRKHALMNDMDRTL 175
           +     + + T + S  +++  + R A   F ++  E+  +W          + D   T+
Sbjct: 154 VQHSDMDTAHTAQFSHTDSLDLVLRTAREQFLVDPQEETRLWIKNSEGSLDRLCDTHVTV 213

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            +A ++  Q +++E   N +GT                                 W +++
Sbjct: 214 LEAALETGQLVVMET-RNKDGT---------------------------------WPSAQ 239

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
             + N         N  S  D D               G+ GL NLGNTCFMNSA+QCL 
Sbjct: 240 LHAMN---------NNVSEEDEDFK----------GQPGICGLTNLGNTCFMNSALQCLS 280

Query: 296 HTPEFARYFRED-YRREINWQNPLGM---------------------------------- 320
           + P+   YF  + Y  E+N++NPLGM                                  
Sbjct: 281 NVPQLTEYFLNNRYLEELNFRNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKTKVGH 340

Query: 321 -------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELL+FLLDGLHEDLNRVK K Y++  DA GRPD+EVA E W NH  
Sbjct: 341 FASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVELCDAAGRPDQEVAQEAWQNHKR 400

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDS+IVD   G +KSTLVCP C  VSVTFDPF YLS+PL  +  R + V     D    
Sbjct: 401 RNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSVPLPVSHKRVLEVFFIPMDPRRK 460

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTIK 485
           P  + + VPK G+  DL   L     +   E + VA++ +H   +   L++   SLS I 
Sbjct: 461 PEQHRLVVPKKGKISDLCVALSKHTGIS-PERMMVADVFSHRFYKLYQLEE---SLSGIL 516

Query: 486 DDDHLAAY----RVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQW--KAYGTPLVSSISRD 539
           D D +  Y    R+  L      + +   L+E+ P      S +    +G PL+ S+ RD
Sbjct: 517 DRDDIFVYEVSGRLEPLEGSREDIVVPVYLRERTPARDYNNSYYGLMLFGHPLLVSVPRD 576

Query: 540 DVISSGKIQSTVQRMLSPFLKKES--------------LMHADSFDPSSMVTTVDPSGEA 585
                G + + +   LS ++ K S                  +   PS+  +  DP  E 
Sbjct: 577 RFTWEG-LYNILMYRLSRYVTKPSSDDEDDVDEKDDDEEDKDNIPGPSTGGSLRDPEPEQ 635

Query: 586 HSNSSSNIAKEDASSSKAVTLPNLP----------LQLVDESNVCFDLSVEGDKTIRIPS 635
              SS    +        +     P          LQ V+ +          D+T     
Sbjct: 636 PGPSSGVTRRCPFLLDNCLGTSQWPPRRRRKQLFTLQTVNSNGT-------SDRTTSPEE 688

Query: 636 SSTSIVVYVDWSQKLLEKY-NTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEP 694
             T   + +DW  ++ ++Y +    E  ++    G V KKA   P+ L  C+E F   E 
Sbjct: 689 VQTQPYIAIDWEPEMKKRYYDEAEAEGYVKHECVGYVLKKA---PVQLQECIELFTTVET 745

Query: 695 LVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFN 754
           L  E+ WYCP CK+ + A+KKLDLW LPE+L+IHLKRFSY++  + KL+T V FPI D +
Sbjct: 746 LEKENPWYCPSCKQHQLATKKLDLWMLPEILIIHLKRFSYTKFSREKLDTLVQFPIRDLD 805

Query: 755 LTKYVAN-KNSSRRQL--YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPIN 811
            +++V   +N S  +L  Y+L A++NHYGGM  GHYT      D  +W+ FDD+ +SP+N
Sbjct: 806 FSEFVLKPQNESAPELYKYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYFDDNSVSPVN 865

Query: 812 EDDVKSAAAYVLFYRR 827
           E+ ++S AAYVLFY+R
Sbjct: 866 ENQIESKAAYVLFYQR 881


>gi|320164457|gb|EFW41356.1| ubiquitin carboxyl-terminal hydrolase [Capsaspora owczarzaki ATCC
           30864]
          Length = 919

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 287/852 (33%), Positives = 400/852 (46%), Gaps = 141/852 (16%)

Query: 41  IDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGG-GPTLARKVISS 99
           IDNS ++ +     P        +LL   DY LLP   WN L  WYG  G  + R+VIS 
Sbjct: 126 IDNSSILTEDGLLRP--------SLLMQTDYELLPLNAWNLLLGWYGAIGHPIERQVISE 177

Query: 100 GLSQTELAVEVYPLRLQLLV-------MPRGECSTIRISKKETIGELHRRACSIFYLNLE 152
                 L VEVYPL + L         +     +T  ISK+ T+  L + AC  F L L+
Sbjct: 178 S---DHLRVEVYPLNIILSPITADTPDLKPTTSATRAISKQATLSALKKVACLEFDLPLD 234

Query: 153 QICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKK 212
                 Y+   K  L  +M+++   AN   D               CK +I+    + + 
Sbjct: 235 DRTRL-YFDDVKKPLDQNMEKSSLAANYLFD--------------GCKITIEQKLPSGEW 279

Query: 213 ASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGAS 272
            S V     +++ ++    +A    +   SS  S   +    R           + R   
Sbjct: 280 PSDVTQRAQQAAAALRPLPAAPAPMAGTRSSLSSFGSSSYPTR-----------SIRATV 328

Query: 273 VGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM----------- 320
            G  GL NLGNTCFMNS +QCL ++    RYF +D Y R++N  NPLGM           
Sbjct: 329 HGALGLRNLGNTCFMNSGLQCLSNSMALTRYFVDDSYLRDVNTTNPLGMRGELAQEYGEL 388

Query: 321 -------------------------------------VELLAFLLDGLHEDLNRVKHKPY 343
                                                 ELLAFLLDGLHEDLNRV  KPY
Sbjct: 389 VKALWSDNPSSSVSPFSFKYKLSMFAPQFNGYQQHDSQELLAFLLDGLHEDLNRVTKKPY 448

Query: 344 IKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYL 403
           I++KDA+GRPD EVADE W  H  RNDSIIVD+ QGQ+KSTLVCPVC++VS+TFDPFMYL
Sbjct: 449 IEAKDANGRPDAEVADEMWHMHKQRNDSIIVDLFQGQFKSTLVCPVCDRVSITFDPFMYL 508

Query: 404 SLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVA 463
           SLPL       ++VTV   D    P    V VPK      L Q L ++  L+    L V 
Sbjct: 509 SLPL-PEKRYAISVTVVLRDPQRRPICVKVRVPKDATVFVLRQALADLLELRADSILLVE 567

Query: 464 EIQNHSIQRFLD-DPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTT 522
             Q+    R  + +P  +   ++    L AY V  + +      LI+    Q      T 
Sbjct: 568 TYQSKIDSRLENTEPCAAYFKLRHGHELYAYEVDTIERHH---HLINVCFLQSNFETDTA 624

Query: 523 SQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPS 582
           +  +  G P++ S  R+DV S  ++   V   + P+  K+ +                  
Sbjct: 625 ASGRFVGRPIICSFPREDV-SGAEVYEVVMTHMRPYFNKQDV------------------ 665

Query: 583 GEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVD-ESNVCFDLSVEGDKTIRIPSSSTSIV 641
               ++  S +A ED+           P  L+  + +  F  S+        P S  +  
Sbjct: 666 ----NDEGSEMATEDS---------EYPFSLIYLDHHAEFPASLHIVPNDATPVSWATGF 712

Query: 642 VYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMW 701
             + W    L   +  F + L     +   T++     +SL  C++ FL++E L  +D W
Sbjct: 713 FGIRWLPDALA--DAGFDQTLYLARDDHESTRETSGTSVSLGDCMQLFLKQEQLGADDPW 770

Query: 702 YCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVAN 761
           YC QCK+ +QA KK DLWR PE LV+HLKRFS+SR  + KLET V+FPI DFNL +Y+ +
Sbjct: 771 YCSQCKQHQQAYKKFDLWRAPETLVVHLKRFSFSRYSRSKLETHVDFPITDFNLAEYMCS 830

Query: 762 KNSSRRQLYELYALTNHYGGMGSGHY------TAHIKLLDENRWYNFDDSHISPINEDDV 815
            + +   LY+LYA++NH+GG+G GH+       A+       RW+NFDDS +SP    D 
Sbjct: 831 -DVTEPLLYDLYAVSNHFGGLGGGHFPSPQLRPAYALNEPSGRWFNFDDSSVSPAEARDA 889

Query: 816 KSAAAYVLFYRR 827
            S++AYVLFYRR
Sbjct: 890 LSSSAYVLFYRR 901


>gi|397476700|ref|XP_003809730.1| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal
           hydrolase 11 [Pan paniscus]
          Length = 973

 Score =  369 bits (948), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 293/911 (32%), Positives = 406/911 (44%), Gaps = 181/911 (19%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV        GD  S            S  P  I+N+ L  D           
Sbjct: 109 WYKQWEAYVQ------GGDQDS------------STFPGCINNATLFQDEI------NWR 144

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L+EG DY+LLP   W+ L SWYG   G P + RKVI     Q    VEVYP+ L L
Sbjct: 145 LKEGLVEGEDYVLLPAAAWHYLVSWYGLEHGQPPIERKVIELPNIQK---VEVYPVEL-L 200

Query: 118 LVMPR--GECSTIRISKKETIGELHRRACSIFYLN-LEQICIWDYYGHRKHALMNDMDRT 174
           LV     G+  T++ S  ++IG + R A   F +   E   +W          + D   T
Sbjct: 201 LVRHNDLGKSHTVQFSHTDSIGLVLRTARERFLVEPQEDTRLWAKNSEGSLDRLYDTHIT 260

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS 234
           + DA ++  Q I++E                     KK                G W   
Sbjct: 261 VLDAALETGQLIIME-------------------TRKKD---------------GTWP-- 284

Query: 235 KGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCL 294
                  S+++    N  S  D D               G+ GL NLGNTCFMNSA+QCL
Sbjct: 285 -------SAQLHVMNNNMSEEDEDFK----------GQPGICGLTNLGNTCFMNSALQCL 327

Query: 295 VHTPEFARYFRED-YRREINWQNPLGMV-------------------------------- 321
            + P+   YF  + Y  E+N++NPLGM                                 
Sbjct: 328 SNVPQLTEYFLNNCYLEELNFRNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVG 387

Query: 322 ---------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHI 366
                          ELL+FLLDGLHEDLNRVK K Y++  DA GRPD+EVA E W NH 
Sbjct: 388 HFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVELCDAAGRPDQEVAQEAWQNHK 447

Query: 367 ARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSA 426
            RNDS+IVD   G +KSTLVCP C  VSVTFDPF YLS+PL  +  R + V     D   
Sbjct: 448 RRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSVPLPISHKRVLEVFFIPMDPRR 507

Query: 427 LPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTI 484
            P  + + VPK G+  DL   L     +   E + VA++ +H   +   L++PL   S+I
Sbjct: 508 KPEQHRLVVPKKGKISDLCVALSKHTGIS-PERMMVADVFSHRFYKLYQLEEPL---SSI 563

Query: 485 KDDDHLAAYRVPKLVKKAVFLQ-LIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVIS 543
            D D +  +    +  +  FL+ L+H L         +        TPL+   +RD    
Sbjct: 564 LDRDDI--FVXVGMAGRWWFLRNLVHFLXTPARDYNNSYYGLMLLDTPLLGISARDRFTW 621

Query: 544 SGKIQSTVQRMLSPFLKKESLMHADSF-------------DPSSMVTTVDPSGEAHSNSS 590
            G     + R+     K  S    D                PS+  +  DP  E    SS
Sbjct: 622 EGLYNVLMYRLSRYVTKPNSDDEDDGDEKEDDEEDKDDVPGPSTGGSLRDPEPEQAGPSS 681

Query: 591 SNIAKEDASSSKAVTLPNLP----------LQLVDESNVCFDLSVEGDKTIRIPSSSTSI 640
               +        +     P          LQ V+ +          D+T          
Sbjct: 682 GVTNRCPFLLDNCLGTSQWPPRRRRKQLFTLQTVNSNGT-------SDRTTSPEEVHAQP 734

Query: 641 VVYVDWSQKLLEKYNTHF-LENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPED 699
            + +DW  ++ ++Y      E  ++    G V KKA   P+ L  C+E F   E L  E+
Sbjct: 735 YIAIDWEPEMKKRYYDEVEAEGYVKHDCVGYVMKKA---PVRLQECIELFTTVETLEKEN 791

Query: 700 MWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYV 759
            WYCP CK+ + A+KKLDLW LPE+L+IHLKRFSY++  + KL+T V FPI D + +++V
Sbjct: 792 PWYCPSCKQHQLATKKLDLWMLPEILIIHLKRFSYTKFSREKLDTLVEFPIRDLDFSEFV 851

Query: 760 AN-KNSSRRQL--YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVK 816
              +N S  +L  Y+L A++NHYGGM  GHYT      D  +W+ FDD+ +SP+NE+ ++
Sbjct: 852 IQPQNESNPELYKYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYFDDNSVSPVNENQIE 911

Query: 817 SAAAYVLFYRR 827
           S AAYVLFY+R
Sbjct: 912 SKAAYVLFYQR 922


>gi|402860133|ref|XP_003894489.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Papio anubis]
          Length = 921

 Score =  367 bits (943), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 281/828 (33%), Positives = 401/828 (48%), Gaps = 122/828 (14%)

Query: 96  VISSGLSQTELAVEVYPLRLQLLVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE- 152
           V+  GL      VEVY L L+L     P    S    SK +TI  + +    +F +  E 
Sbjct: 79  VVEHGLFVKHCKVEVYLLELKLCENSDPTNVLS-CHFSKADTIATIEKEMRKLFNIPAER 137

Query: 153 QICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDN------ 206
           +  +W+ Y    +  ++ +D T+ DA +   Q +++E   N +GT  + ++Q        
Sbjct: 138 ETRLWNKYMSNTYEQLSKLDNTVQDAGLYQGQVLVIEP-QNEDGTWPRQTLQSKSSTAPS 196

Query: 207 -GFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSG 265
             F     SS     S S+  IA G S S  T   HSS +S   +  SA  +     SS 
Sbjct: 197 RNFTTSPKSSASPYSSVSASPIANGDSTS--TCGMHSSGVSRGGSGFSASYNCQEPPSSH 254

Query: 266 VTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV--- 321
           +       GL GL NLGNTCFMNSA+QCL +T     YF +++Y  EIN  NPLGM    
Sbjct: 255 IQP-----GLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEI 309

Query: 322 --------------------------------------------ELLAFLLDGLHEDLNR 337
                                                       ELLAFLLDGLHEDLNR
Sbjct: 310 AEAYAELIKQMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNR 369

Query: 338 VKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTF 397
           VK KPY++ KDA+GRPD  VA E W NH  RNDS+IVD   G +KSTLVCP C KVSVTF
Sbjct: 370 VKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTF 429

Query: 398 DPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQS 457
           DPF YL+LPL     R M V +  +D    P+ Y VTVP  G   DL + L  +C +  +
Sbjct: 430 DPFCYLTLPLPLKKDRVMEVFLVPADPHCRPTQYRVTVPLMGAVSDLCEALSRLCGIA-A 488

Query: 458 EELKVAEIQNHSIQRF--LDDPLISLSTIKDDDHLAAYRVPKL-VKKAVFLQLIHRLQEQ 514
           E + VA++ NH   +   +D+    L+ I   D +  Y+V    +  +  + L    +E+
Sbjct: 489 ENMVVADVYNHRFHKIFQMDE---GLNHIMPRDDIFVYQVCSTSMDGSECVTLPVYFRER 545

Query: 515 EPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSS 574
           +   + T+S    YG PL+ S+ +  +      Q+   R +S ++K+      D F  S 
Sbjct: 546 KSRPSSTSSGSALYGQPLLLSVPKHKLTLESLYQAVCDR-ISRYVKQPL---PDDFGSSP 601

Query: 575 M-----------------------------VTTVDPSGEAHSNSSSNIAKEDASSSKAVT 605
           +                             ++  + SGE    +      +     +   
Sbjct: 602 LEPGTCNGSRNSCEGEDEEEMEHQEEGKEQLSETEGSGEDELGNDPTKTTQKKIKGQPCP 661

Query: 606 LPNLPLQLVDESNVCFDLSVEGD-KTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLE 664
                  LV+        S+  D K +++ S ST   + +DW     E  + ++ E   E
Sbjct: 662 KRLFTFSLVNSYGTADINSLATDGKLLKLNSRST---LAIDWDS---ETRSLYYDEQESE 715

Query: 665 VFKN-----GPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLW 719
            ++       P  KK  T  ++L  C+E F   E L   D WYCP CK+ +QA+KK DLW
Sbjct: 716 AYEKHVSMLQPQKKKKTT--VALRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLW 773

Query: 720 RLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHY 779
            LP++LV+HLKRFSY+R  + KL+T V FPI   N++++V N  S+R  +Y+L A++NHY
Sbjct: 774 SLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNP-SARPYVYDLIAVSNHY 832

Query: 780 GGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           G MG GHYTA+ K     +WY FDDS++S  +ED + + AAYVLFY+R
Sbjct: 833 GAMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQR 880


>gi|432953305|ref|XP_004085340.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like, partial
           [Oryzias latipes]
          Length = 786

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 242/657 (36%), Positives = 338/657 (51%), Gaps = 111/657 (16%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV----------- 321
           GL GL NLGNTCFMNSA+QCL +TP    YF +D Y  E+N  NPLGM            
Sbjct: 31  GLCGLSNLGNTCFMNSAVQCLSNTPPLTDYFLKDKYTDELNEDNPLGMKGEIARVYAELI 90

Query: 322 ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                               ELLAFLLDGLHEDLNR++ KPYI+
Sbjct: 91  KQLWSGKYSYVTPRPFKTQVGRFAPQFSGYQQQDSHELLAFLLDGLHEDLNRIRKKPYIQ 150

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
            KDA+GRPD+ VA+E W NHI RNDSIIVD+  G +KSTLVCPVC KVSVTFDPF YL+L
Sbjct: 151 LKDANGRPDKVVAEEAWENHIKRNDSIIVDIFHGLFKSTLVCPVCAKVSVTFDPFCYLTL 210

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
           PL     RT+ V +   D  A P+ Y +TVPK G   DL   L N+  +  +E++ V +I
Sbjct: 211 PLPMKKERTLEVYLVRLDPVAKPTQYKLTVPKVGCISDLCTALSNLSGVP-AEKMIVTDI 269

Query: 466 QNHSIQRFLDDPLISLSTIKDDDHLAAYRVP-KLVKKAVFLQLIHRLQEQEPGAAQTTSQ 524
            NH   R       +LS+I + D +  + V    V+    + +   L+E+   +    + 
Sbjct: 270 YNHRFHRIFATNE-NLSSIMERDDIYVFEVAVNRVEDTDHVVIPVHLREKYKQSGYNHTS 328

Query: 525 WKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKE---------------------- 562
              +G P + ++ R   +S  K+ + +   L  F++                        
Sbjct: 329 TPLFGQPFLIAVPR--TLSEDKLYNMLLLRLYRFVRSSVEEDEDDCEETQPSKPHTVNGN 386

Query: 563 -----------SLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKED-----------ASS 600
                      S M  D  D  S      PS   +S S  ++  ++           +S 
Sbjct: 387 ATNGLLEEGSPSEMETDEQDDESSQDQELPSENDNSQSEDSVGGDNELENGVVGHQISSK 446

Query: 601 SKAVTLPN----LPLQLVDESNVCFDLSVEGDKTIRIPSS----STSIVVYVDWSQKLLE 652
            +     N       Q  +     F L  E  + IR        S    + +DW  ++ +
Sbjct: 447 GQQPVGHNRKRLFTFQFNNMGKTDFSLIKEDSRQIRFDEGHLRLSDRSYLSLDWEPEVKK 506

Query: 653 KYNTHFLENLLEVF-KNGPVTKKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERR 710
           KY   F E ++E F K+  +  K + +    L  C++ F  +E L  +D WYCP CK+ +
Sbjct: 507 KY---FDETIVEDFDKHESMEYKPQKKAFFKLKDCIDLFTTKEKLGADDPWYCPNCKQHQ 563

Query: 711 QASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLY 770
           QA+KKLDLW LP VLV+HLKRFSYSR M+ KL++ V+FP+ D ++++++ N N+   + Y
Sbjct: 564 QATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDSLVDFPLRDLDMSEFLINPNAGPCR-Y 622

Query: 771 ELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           +L A++NHYGGMG GHYTA+ K  D+ +WYNFDDS +SP +ED + S AAYVLFY+R
Sbjct: 623 DLIAVSNHYGGMGGGHYTAYAKNKDDGKWYNFDDSSVSPASEDQIVSKAAYVLFYQR 679


>gi|403297385|ref|XP_003939546.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 11 [Saimiri
           boliviensis boliviensis]
          Length = 923

 Score =  367 bits (942), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 283/883 (32%), Positives = 411/883 (46%), Gaps = 175/883 (19%)

Query: 38  PSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLAR 94
           P  I+N+ L  D T         + + L+EG DY+LLP   W+ L SWYG   G P + R
Sbjct: 89  PGCINNAPLFEDETNW------RLKEGLVEGEDYVLLPAAAWHYLVSWYGLENGQPPIER 142

Query: 95  KVISSGLSQTELAVEVYPLRLQLLVMPRGECST---IRISKKETIGELHRRACSIFYLN- 150
           KVI   LS     VEVYP  ++LL++   +  T   ++ S  +++G + R A   F +  
Sbjct: 143 KVIE--LSNIR-KVEVYP--VELLLVRHNDLRTSHAVQFSNTDSVGLVLRTARERFLVEP 197

Query: 151 LEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAE 210
            E   +W          + D   T+ D+ ++  Q I++E                     
Sbjct: 198 QEDTRLWAKNSEGSLDRLYDTHLTVFDSALETGQLIIME-------------------TR 238

Query: 211 KKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRG 270
           KK                G W +++    N   +IS         + ++  G  G+    
Sbjct: 239 KK---------------DGTWPSAQLHVMN--KKIS---------EDEDFRGQPGI---- 268

Query: 271 ASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV-------- 321
                 GL NLGNTCFMNSA+QCL + P+   YF  + Y  E+N++NPLGM         
Sbjct: 269 -----CGLTNLGNTCFMNSALQCLSNVPQLTEYFLNNCYLEELNFRNPLGMKGEIAEAYA 323

Query: 322 ---------------------------------------ELLAFLLDGLHEDLNRVKHKP 342
                                                  ELL+FLLDGLHEDLNRVK K 
Sbjct: 324 DLVKQAWSGHHRSIVPHVFKNKVGHFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKE 383

Query: 343 YIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMY 402
           Y++  DA GRPD+EVA E W NH  RNDS+IVD   G +KSTLVCP C  VSVTFDPF Y
Sbjct: 384 YVELCDAAGRPDQEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCY 443

Query: 403 LSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKV 462
           LS+PL  +  R + V     D    P  + + VPK G+  DL   L     +   E + V
Sbjct: 444 LSVPLPISHKRVLEVFFIPMDPRRKPEQHRLVVPKKGKISDLCVALSKHTGIS-PERMMV 502

Query: 463 AEIQNHSIQRF--LDDPLISLSTIKDDDHLAAYRVPKLV------KKAVFLQLIHRLQEQ 514
           A++ +H   +   L++P   LS+I D D +  Y V   +      ++ + + +   L+E+
Sbjct: 503 ADVFSHRFYKLYQLEEP---LSSILDRDDIFVYEVSGRIEAIEGSREDIVVPVY--LRER 557

Query: 515 EPGAAQTTSQWK--AYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSF-- 570
            P      S +    +G PL+ S+ RD     G + + +   LS ++ K S    D    
Sbjct: 558 TPARDYNNSYYGLMLFGHPLLVSVPRDRFTWEG-LYNVLMYRLSRYVTKPSSDDEDDGDE 616

Query: 571 ------------DPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLP-------- 610
                        PS+  +  +P  E    SS    +        +     P        
Sbjct: 617 KEDDEEDKDDVPGPSTGGSLREPESEQPGPSSGVTNRCPFLLDNCLGTSQWPPRRRRKQL 676

Query: 611 --LQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHF-LENLLEVFK 667
             LQ V+ +          D+T           + +DW  ++ ++Y      E  ++   
Sbjct: 677 FTLQTVNSNGT-------SDRTTSPEEVHAQPYIAIDWEPEMKKRYYDEVEAEGYVKHDC 729

Query: 668 NGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVI 727
            G V KKA   P+ L  C+E F   E L  E+ WYCP CK+ + A+KKLDLW LPE+L+I
Sbjct: 730 VGYVMKKA---PVRLQECIELFTTVETLEKENPWYCPSCKQHQLATKKLDLWMLPEILII 786

Query: 728 HLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVAN-KNSSRRQL--YELYALTNHYGGMGS 784
           HLKRFSY++  + KL+T V FPI D + +++V   +N S  +L  Y+L A++NHYGGM  
Sbjct: 787 HLKRFSYTKFSREKLDTLVEFPIRDLDFSEFVIKPQNESNPELYKYDLIAVSNHYGGMRD 846

Query: 785 GHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           GHYT      D  +W+ FDD+ +SP+NE+ ++S AAYVLFY+R
Sbjct: 847 GHYTTFACNKDSGQWHYFDDNSVSPVNENQIESKAAYVLFYQR 889


>gi|355704756|gb|EHH30681.1| Ubiquitin carboxyl-terminal hydrolase 11 [Macaca mulatta]
          Length = 929

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 290/918 (31%), Positives = 412/918 (44%), Gaps = 193/918 (21%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV        GD  S            S  P  I+N+ L  D           
Sbjct: 80  WYKQWEAYVQ------GGDQDS------------STFPGCINNATLFQDEINW------R 115

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L+EG DY+LLP   W+ L SWYG   G P + RKVI     Q    VEVYP+ L L
Sbjct: 116 LKEGLVEGEDYVLLPAAAWHYLVSWYGLEHGQPPIERKVIELPNIQ---KVEVYPVEL-L 171

Query: 118 LVMPR--GECSTIRISKKETIGELHRRACSIFYLN-LEQICIWDYYGHRKHALMNDMDRT 174
           LV     G   T++ S  ++I  + R A   F +   E   +W          + D   T
Sbjct: 172 LVRHNDLGRSHTVQFSHTDSI--VLRTARERFLVEPQEDTRLWAKNSEGSLDRLYDTHIT 229

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS 234
           + DA ++  Q I++E                     KK                G W ++
Sbjct: 230 VLDAALETGQLIIME-------------------TRKK---------------DGTWPSA 255

Query: 235 KGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCL 294
           +              ++  + + ++  G  G+          GL NLGNTCFMNSA+QCL
Sbjct: 256 QL-------------HVMMSEEDEDFKGQPGI---------CGLTNLGNTCFMNSALQCL 293

Query: 295 VHTPEFARYFRED-YRREINWQNPLGMV-------------------------------- 321
            + P+   YF  + Y  E+N++NPLGM                                 
Sbjct: 294 SNVPQLTEYFLNNCYLEELNFRNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVG 353

Query: 322 ---------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHI 366
                          ELL+FLLDGLHEDLNRVK K Y++  DA GRPD+EVA E W NH 
Sbjct: 354 HFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVELCDAAGRPDQEVAQEAWQNHK 413

Query: 367 ARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSA 426
            RNDS+IVD   G +KSTLVCP C  VSVTFDPF YLS+PL  +  R + V     D   
Sbjct: 414 RRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSVPLPISHKRVLEVFFIPMDPRR 473

Query: 427 LPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTI 484
            P  + + VPK G+  DL   L     +   E + VA++ +H   +   L++P   LS+I
Sbjct: 474 KPEQHRLVVPKKGKISDLCVALSKHTGIS-PERMMVADVFSHRFYKLYQLEEP---LSSI 529

Query: 485 KDDDHLAAYRVPKLV------KKAVFLQLIHRLQEQEPGAAQTTSQW--KAYGTPLVSSI 536
            D D +  Y V   +      ++ + + +   L+E+ P      S +    +G PL+ S+
Sbjct: 530 LDRDDIFVYEVSGRIEAIEGSREDIVVPVY--LRERTPARDYNNSYYGLMLFGHPLLVSV 587

Query: 537 SRDDVISSGKIQSTVQRMLSPFLKKESLMHADSF-------------DPSSMVTTVDPSG 583
            RD     G     + R+     K  S    D                PS+  +  DP  
Sbjct: 588 PRDRFTWEGLYNVLMYRLSRYVSKPNSDDEDDGDEKEDDEEDKDDVPGPSTGGSLRDPEP 647

Query: 584 EAHSNSSSNIAKEDASSSKAVTLPNLP----------LQLVDESNVCFDLSVEGDKTIRI 633
           E    SS    +        +     P          LQ V+ +          D+T   
Sbjct: 648 EQAGPSSGVTNRCPFLLDNCLGTSQWPPRRRRKQLFTLQTVNSNGT-------SDRTTSP 700

Query: 634 PSSSTSIVVYVDWSQKLLEKYNTHF-LENLLEVFKNGPVTKKARTEPLSLYTCLEAFLRE 692
                   + +DW  ++ ++Y      E  ++    G V KKA   P+ L  C+E F   
Sbjct: 701 EEVHAQPYIAIDWEPEMKKRYYDEIEAEGYVKHDCVGYVMKKA---PVRLQECIELFTTV 757

Query: 693 EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHD 752
           E L  E+ WYCP CK+ + A+KKLDLW LPE+L+IHLKRFSY++  + KL+T V FPI D
Sbjct: 758 ETLEKENPWYCPSCKQHQLATKKLDLWMLPEILIIHLKRFSYTKFSREKLDTLVEFPIRD 817

Query: 753 FNLTKYVAN-KNSSRRQL--YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISP 809
            + +++V   +N S  +L  Y+L A++NHYGGM  GHYT      D  +W+ FDD+ +SP
Sbjct: 818 LDFSEFVIQPQNESNPELYKYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYFDDNSVSP 877

Query: 810 INEDDVKSAAAYVLFYRR 827
           +NE+ ++S AAYVLFY+R
Sbjct: 878 VNENQIESKAAYVLFYQR 895


>gi|296235360|ref|XP_002807922.1| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal
           hydrolase 11 [Callithrix jacchus]
          Length = 927

 Score =  366 bits (939), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 280/874 (32%), Positives = 407/874 (46%), Gaps = 168/874 (19%)

Query: 47  VNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQ 103
           +N+A   +      + + L+EG DY+LLP   W+ L SWYG   G P + RKVI   LS 
Sbjct: 95  INNAVLFEDEINWRLKEGLVEGEDYVLLPAAAWHYLVSWYGLEDGQPPIERKVIE--LSN 152

Query: 104 TELAVEVYPLRLQLLVMPRGECST---IRISKKETIGELHRRACSIFYLN-LEQICIWDY 159
               VEVYP+  +LL++   +  T   ++ S  +++G + R A   F +   E   +W  
Sbjct: 153 IR-KVEVYPV--ELLLVRHNDLRTSHAVQFSNTDSVGLVLRTARERFLVEPQEDTRLWAK 209

Query: 160 YGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVE 219
                   + D   T+ D+ ++  Q I++E                     KK       
Sbjct: 210 NSEGSLDRLYDTHLTVFDSALETGQLIIME-------------------TRKKD------ 244

Query: 220 PSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLL 279
                    G W          S+++       S  D D          RG   G+ GL 
Sbjct: 245 ---------GTWP---------SAQLHVMNKKISEEDED---------FRGQP-GICGLT 276

Query: 280 NLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV----------------- 321
           NLGNTCFMNSA+QCL + P+   YF  + Y  E+N++NPLGM                  
Sbjct: 277 NLGNTCFMNSALQCLSNVPQLTEYFLNNCYLEELNFRNPLGMKGEIAEAYADLVKQAWSG 336

Query: 322 ------------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADG 351
                                         ELL+FLLDGLHEDLNRVK K Y++  DA G
Sbjct: 337 HHRSIVPHVFKNKVGHFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVELCDAAG 396

Query: 352 RPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATT 411
           RPD+EVA E W NH  RNDS+IVD   G +KSTLVCP C  VSVTFDPF YLS+PL  + 
Sbjct: 397 RPDQEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSVPLPISH 456

Query: 412 TRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQ 471
            R + V     D    P  + + VPK G+  DL   L     +   E + VA++ +H   
Sbjct: 457 KRVLEVFFIPMDPRRKPEQHRLVVPKKGKISDLCVALSKHTGIS-PERMMVADVFSHRFY 515

Query: 472 RF--LDDPLISLSTIKDDDHLAAYRVPKLV------KKAVFLQLIHRLQEQEPGAAQTTS 523
           +   L++PL   S+I D D +  Y V   +      ++ + + +   L+E+ P      S
Sbjct: 516 KLYQLEEPL---SSILDRDDIFVYEVSGRIEAIEGSREDIVVPVY--LRERTPARDYNNS 570

Query: 524 QWKA--YGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSF----------- 570
            +    +G PL+ S+ RD     G + + +   LS ++ K S    D             
Sbjct: 571 YYGLMLFGHPLLVSVPRDRFTWEG-LYNVLMYRLSRYVTKPSSDDEDDGDEKEDDEEDKD 629

Query: 571 ---DPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLP----------LQLVDES 617
               PS+  +  +P  E    SS    +        +     P          LQ V+ +
Sbjct: 630 DVPGPSTGGSLREPEPEQPGPSSGVTNRCPFLLDNCLGTSQWPPRRRRKQLFTLQTVNSN 689

Query: 618 NVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKY-NTHFLENLLEVFKNGPVTKKAR 676
                     D+T           + +DW  ++ ++Y +    E  ++    G V KKA 
Sbjct: 690 GT-------SDRTTSPEEVHAQPYIAIDWEPEMKKRYYDEAEAEGYVKHDCVGYVMKKA- 741

Query: 677 TEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSR 736
             P+ L  C+E F   E L  E+ W+CP CK+ + A+KKLDLW LPE+L+IHLKRFSY++
Sbjct: 742 --PVRLQECIELFTTVETLEKENPWFCPSCKQHQLATKKLDLWMLPEILIIHLKRFSYTK 799

Query: 737 SMKHKLETFVNFPIHDFNLTKYVAN-KNSSRRQL--YELYALTNHYGGMGSGHYTAHIKL 793
             + KL+T V FPI D + +++V   +N S  +L  Y+L A++NHYGGM  GHYT     
Sbjct: 800 FSREKLDTLVEFPIRDLDFSEFVIKPQNESNPELYKYDLIAVSNHYGGMRDGHYTTFACN 859

Query: 794 LDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            D  +W+ FDD+ +SP+NE+ ++S AAYVLFY+R
Sbjct: 860 KDSGQWHYFDDNSVSPVNENQIESKAAYVLFYQR 893


>gi|355757316|gb|EHH60841.1| Ubiquitin carboxyl-terminal hydrolase 11 [Macaca fascicularis]
          Length = 933

 Score =  366 bits (939), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 290/918 (31%), Positives = 412/918 (44%), Gaps = 193/918 (21%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV        GD  S            S  P  I+N+ L  D           
Sbjct: 84  WYKQWEAYVQ------GGDQDS------------STFPGCINNATLFQDEINW------R 119

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L+EG DY+LLP   W+ L SWYG   G P + RKVI     Q    VEVYP+ L L
Sbjct: 120 LKEGLVEGEDYVLLPAAAWHYLVSWYGLEHGQPPIERKVIELPNIQ---KVEVYPVEL-L 175

Query: 118 LVMPR--GECSTIRISKKETIGELHRRACSIFYLN-LEQICIWDYYGHRKHALMNDMDRT 174
           LV     G   T++ S  ++I  + R A   F +   E   +W          + D   T
Sbjct: 176 LVRHNDLGRSHTVQFSHTDSI--VLRTARERFLVEPQEDTRLWAKNSEGSLDRLYDTHIT 233

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS 234
           + DA ++  Q I++E                     KK                G W ++
Sbjct: 234 VLDAALETGQLIIME-------------------TRKK---------------DGTWPSA 259

Query: 235 KGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCL 294
           +              ++  + + ++  G  G+          GL NLGNTCFMNSA+QCL
Sbjct: 260 QL-------------HVMMSEEDEDFKGQPGI---------CGLTNLGNTCFMNSALQCL 297

Query: 295 VHTPEFARYFRED-YRREINWQNPLGM--------------------------------- 320
            + P+   YF  + Y  E+N++NPLGM                                 
Sbjct: 298 SNVPQLTEYFLNNCYLEELNFRNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVG 357

Query: 321 --------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHI 366
                          ELL+FLLDGLHEDLNRVK K Y++  DA GRPD+EVA E W NH 
Sbjct: 358 HFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVELCDAAGRPDQEVAQEAWQNHK 417

Query: 367 ARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSA 426
            RNDS+IVD   G +KSTLVCP C  VSVTFDPF YLS+PL  +  R + V     D   
Sbjct: 418 RRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSVPLPISHKRVLEVFFIPMDPRR 477

Query: 427 LPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTI 484
            P  + + VPK G+  DL   L     +   E + VA++ +H   +   L++P   LS+I
Sbjct: 478 KPEQHRLVVPKKGKISDLCVALSKHTGIS-PERMMVADVFSHRFYKLYQLEEP---LSSI 533

Query: 485 KDDDHLAAYRVPKLV------KKAVFLQLIHRLQEQEPGAAQTTSQWK--AYGTPLVSSI 536
            D D +  Y V   +      ++ + + +   L+E+ P      S +    +G PL+ S+
Sbjct: 534 LDRDDIFVYEVSGRIEAIEGSREDIVVPVY--LRERTPARDYNNSYYGLMLFGHPLLVSV 591

Query: 537 SRDDVISSGKIQSTVQRMLSPFLKKESLMHADSF-------------DPSSMVTTVDPSG 583
            RD     G     + R+     K  S    D                PS+  +  DP  
Sbjct: 592 PRDRFTWEGLYNVLMYRLSRYVSKPNSDDEDDGDEKEDDEEDKDDVPGPSTGGSLRDPEP 651

Query: 584 EAHSNSSSNIAKEDASSSKAVTLPNLP----------LQLVDESNVCFDLSVEGDKTIRI 633
           E    SS    +        +     P          LQ V+ +          D+T   
Sbjct: 652 EQAGPSSGVTNRCPFLLDNCLGTSQWPPRRRRKQLFTLQTVNSNGT-------SDRTTSP 704

Query: 634 PSSSTSIVVYVDWSQKLLEKYNTHF-LENLLEVFKNGPVTKKARTEPLSLYTCLEAFLRE 692
                   + +DW  ++ ++Y      E  ++    G V KKA   P+ L  C+E F   
Sbjct: 705 EEVHAQPYIAIDWEPEMKKRYYDEIEAEGYVKHDCVGYVMKKA---PVRLQECIELFTTV 761

Query: 693 EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHD 752
           E L  E+ WYCP CK+ + A+KKLDLW LPE+L+IHLKRFSY++  + KL+T V FPI D
Sbjct: 762 ETLEKENPWYCPSCKQHQLATKKLDLWMLPEILIIHLKRFSYTKFSREKLDTLVEFPIRD 821

Query: 753 FNLTKYVAN-KNSSRRQL--YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISP 809
            + +++V   +N S  +L  Y+L A++NHYGGM  GHYT      D  +W+ FDD+ +SP
Sbjct: 822 LDFSEFVIQPQNESNPELYKYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYFDDNSVSP 881

Query: 810 INEDDVKSAAAYVLFYRR 827
           +NE+ ++S AAYVLFY+R
Sbjct: 882 VNENQIESKAAYVLFYQR 899


>gi|350595653|ref|XP_003484153.1| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal
           hydrolase 11 [Sus scrofa]
          Length = 951

 Score =  365 bits (938), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 293/919 (31%), Positives = 425/919 (46%), Gaps = 191/919 (20%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W+Q W +YV        GD  S            S  P  I+N+ L  D        G  
Sbjct: 98  WYQKWEEYVQ------GGDQDS------------STSPGCINNAGLFEDQVNWRLKKG-- 137

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVIS-SGLSQTELAVEVYPLRLQ 116
               L+EG DY+LLP   W+ L +WYG   G P + RKV+   G+ +    VEVYP+ L 
Sbjct: 138 ----LVEGEDYVLLPAAAWHYLVNWYGLEHGQPPVERKVVELPGIQK----VEVYPVELL 189

Query: 117 LLVMPRGECS-TIRISKKETIGELHRRACSIFYLN-LEQICIWDYYGHRKHALMNDMDRT 174
           L+     + + T + S  +++  +   A   F ++  E+  +W          + +   T
Sbjct: 190 LVQHSDMDTAHTAQFSHTDSLDLVLHTAREQFLVSPQEETRLWIKNAEGSFERLCNTHVT 249

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS 234
           + DA ++  Q +++E   N +GT                                 W ++
Sbjct: 250 VLDAALKTGQVVIMET-RNKDGT---------------------------------WPSA 275

Query: 235 KGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCL 294
           +  + N ++E           + ++  G  G+          GL NLGNTCFMNSA+QCL
Sbjct: 276 QPHAMNSATE-----------EEEDFQGQPGIC---------GLTNLGNTCFMNSALQCL 315

Query: 295 VHTPEFARYF-REDYRREINWQNPLGMV-------------------------------- 321
            + P+   YF +  Y  E+N+ NPLGM                                 
Sbjct: 316 SNVPQLTEYFLKNRYLEELNFCNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKTKVG 375

Query: 322 ---------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHI 366
                          ELL+FLLDGLHEDLNRVK K Y++  DA GRPD+EVA E W NH 
Sbjct: 376 HFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVELCDAAGRPDQEVAQEAWQNHK 435

Query: 367 ARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSA 426
            RNDS+IVD   G +KSTLVCP C  VSVTFDPF YLS+PL  +  R M V   + D   
Sbjct: 436 RRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSVPLPVSHKRVMEVFFVSMDPRR 495

Query: 427 LPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTI 484
            P  + + VPK G+  DL   L     +   E + VA++ +H   +   L++   SLS+I
Sbjct: 496 KPEQHRLVVPKKGKISDLCVALAKHTGVS-PERMMVADVFSHRFYKIYQLEE---SLSSI 551

Query: 485 KDDDHLAAYRVPKLV------KKAVFLQLIHRLQEQEPGAAQTTSQWK--AYGTPLVSSI 536
            D D +  Y V          ++ V L +   L+E+ P      S +    +G PL+ S+
Sbjct: 552 LDRDDIFIYEVSGRAAIGENSREDVVLPIY--LRERTPARDYNNSYYGLMLFGHPLLVSV 609

Query: 537 SRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVT--TVDPSGEAHSNSSSNIA 594
            RD  +S   +   +   LS ++ + S    D  D   +    T+   G    +SS +  
Sbjct: 610 PRDR-LSWDALYHILLYRLSRYVTRPSSDDEDDGDEKDLEDKDTLPKPGHVAGSSSQDPG 668

Query: 595 KEDASSSKAVT------LPNLP----------------LQLVDESNVCFDLSVEGDKTIR 632
            E A  S  V       + N P                LQ V+ SN   D S   + T  
Sbjct: 669 LEQAGPSSGVAGGSRAPVDNSPGPSHWPQRARRKHLFTLQTVN-SNGTSDRSTFNEDTHA 727

Query: 633 IPSSSTSIVVYVDWSQKLLEKYNTHF-LENLLEVFKNGPVTKKARTEPLSLYTCLEAFLR 691
            P       + +DW  ++ ++Y      E  ++    G V KKA   P+ L  C+E F  
Sbjct: 728 QP------YIAIDWEPEMKKRYYDEVEAEGYVKHDCVGYVLKKA---PVRLQECIELFTT 778

Query: 692 EEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIH 751
            E L  E+ WYCP CK+ + A+KKLDLW LPE L+IHLKRFSY++  + KL+T V FPI 
Sbjct: 779 VETLEKENPWYCPTCKQHQLATKKLDLWMLPETLIIHLKRFSYTKFSREKLDTLVEFPIR 838

Query: 752 DFNLTKYVAN-KNSSRRQL--YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHIS 808
           D + +++V   +N S  +L  Y+L A++NHYGG+  GHYT      D  +W+ FDD+ +S
Sbjct: 839 DLDFSEFVIKPQNESAPELYKYDLIAVSNHYGGLRDGHYTTFACNKDSGQWHYFDDNSVS 898

Query: 809 PINEDDVKSAAAYVLFYRR 827
           P+ E+ ++S AAYVLFY+R
Sbjct: 899 PVTENQIESKAAYVLFYQR 917


>gi|301764841|ref|XP_002917823.1| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal
           hydrolase 11-like [Ailuropoda melanoleuca]
          Length = 952

 Score =  365 bits (937), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 287/881 (32%), Positives = 409/881 (46%), Gaps = 171/881 (19%)

Query: 38  PSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLAR 94
           P  I+N+DL  D        G      L+EG DY+LLP   W+ L  WYG   G P + R
Sbjct: 118 PGCINNADLFEDQVNWRLKKG------LVEGEDYVLLPAAAWHCLVDWYGLEHGQPPIER 171

Query: 95  KVISSGLSQTELAVEVYPLRLQLLVMPRGECS-TIRISKKETIGELHRRACSIFYLN-LE 152
           KV+     Q    VEVYP+ L L+     +   T + S  +++  + R A   F ++  E
Sbjct: 172 KVVELPSVQK---VEVYPVELLLVRHSDMDTPHTAQFSHTDSVDLVLRTAREQFLVSPQE 228

Query: 153 QICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKK 212
           +  +W          + +   T+ DA ++  Q +++E   N +GT               
Sbjct: 229 ETRLWIKNAEGSFERLCNTRVTVLDAALKSGQVVIMET-RNKDGT--------------- 272

Query: 213 ASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGAS 272
                             W +++  + N            +A + D              
Sbjct: 273 ------------------WPSAQPQAVN------------TALEEDEEFQ--------GQ 294

Query: 273 VGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV---------- 321
            G+ GL NLGNTCFMNSA+QCL + P+   YF +  Y  E+N+ NPLGM           
Sbjct: 295 PGICGLTNLGNTCFMNSALQCLSNVPQLTEYFLKNRYLEELNFCNPLGMKGEIAEAYADL 354

Query: 322 -------------------------------------ELLAFLLDGLHEDLNRVKHKPYI 344
                                                ELL+FLLDGLHEDLNRVK K Y+
Sbjct: 355 VKQAWSGHPXXXXXXXXQTKVGHFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYV 414

Query: 345 KSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLS 404
           +  DA GRPD+EVA E W NH  RNDS+IVD   G +KSTLVCP C  VSVTFDPF YLS
Sbjct: 415 ELCDAAGRPDQEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLS 474

Query: 405 LPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAE 464
           +PL  +  R M V   + D    P  + + VPK G+  DL   L     +   E + VA+
Sbjct: 475 VPLPVSHKRVMEVFFVSMDPRRKPEQHRLVVPKKGKISDLCVALAKHTGMS-PERMMVAD 533

Query: 465 IQNHSIQRF--LDDPLISLSTIKDDDHLAAYRVP------KLVKKAVFLQLIHRLQEQEP 516
           + +H   +   L++   SLS+I D D +  Y V       +  ++ V L +   L+E+ P
Sbjct: 534 VFSHRFYKIYQLEE---SLSSILDRDDIFIYEVSGRSAIGENSREDVVLPIY--LRERTP 588

Query: 517 GAAQTTSQWK--AYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSS 574
                 S +    +G PL+ S+ RD  +S   +   +   LS ++ + S    D  D   
Sbjct: 589 ARDYNNSYYGLMLFGHPLLVSVPRDR-LSWDALYHILLYRLSRYVTRPSSDDEDDGDEKD 647

Query: 575 MVT--TVDPSGEAHSNSSSNIAKEDASSSKAVT------LPNLP---------------- 610
           M     +   G     SS N   E A  S  V       + N P                
Sbjct: 648 MEDKDNIPKPGHVAGGSSQNSGPEQAGPSSGVAGGSRAPVDNSPGPSHWPQRARRKHLFT 707

Query: 611 LQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHF-LENLLEVFKNG 669
           LQ V+ SN   D S   + T   P       + +DW  ++ ++Y      E  ++    G
Sbjct: 708 LQTVN-SNGTSDRSTFNEDTHAQP------YIAIDWEPEMKKRYYDEVEAEGYVKHDCVG 760

Query: 670 PVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHL 729
            V KKA   P+ L  C+E F   E L  E+ WYCP CK+++ A+KKLDLW LPE L+IHL
Sbjct: 761 YVLKKA---PVRLQECIELFTTVETLEKENPWYCPTCKQQQLATKKLDLWTLPETLIIHL 817

Query: 730 KRFSYSRSMKHKLETFVNFPIHDFNLTKYVAN-KNSSRRQL--YELYALTNHYGGMGSGH 786
           KRFSY++  + KL+T V FPI D + +++V   +N S  +L  Y+L A++NHYGG+  GH
Sbjct: 818 KRFSYTKFSREKLDTLVEFPIRDLDFSEFVIKPQNESAPELYKYDLIAVSNHYGGLRDGH 877

Query: 787 YTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           YT      D  +W+ FDD+ +SP+ E+ ++S AAYVLFY+R
Sbjct: 878 YTTFACNKDSGQWHYFDDNSVSPVTENQIESKAAYVLFYQR 918


>gi|297852782|ref|XP_002894272.1| hypothetical protein ARALYDRAFT_892011 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297340114|gb|EFH70531.1| hypothetical protein ARALYDRAFT_892011 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 488

 Score =  365 bits (936), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 204/452 (45%), Positives = 281/452 (62%), Gaps = 20/452 (4%)

Query: 322 ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQY 381
           ELL FLLDGLHEDLNR+K KPY+++KD DG P+EEVADEYW NH+A NDSIIVD+C GQ 
Sbjct: 47  ELLVFLLDGLHEDLNRIKTKPYVEAKDGDGLPEEEVADEYWRNHVALNDSIIVDLCLGQL 106

Query: 382 KSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRC 441
           KST+VCP+C K SVTFDPFMYLSLPL  T+ RTM + V ++DG +LP+  TV VP+ GR 
Sbjct: 107 KSTIVCPICKKGSVTFDPFMYLSLPLPCTSMRTMDLIVMSADGGSLPALLTVNVPEFGRF 166

Query: 442 RDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKK 501
            DL + L   CSL++ E L V E+ N+ I RF+++P  SL+ I     L  YR+ K    
Sbjct: 167 EDLQKALVTACSLQEDETLLVTEVYNNQIIRFIEEPTDSLTIIGYGAKLVVYRLKKDANN 226

Query: 502 AVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKK 561
           +  +   H+  E++    ++   WK +G PLVS +   DV +   +++   ++LS F   
Sbjct: 227 SRLIVFTHQKLEEQVILGKSNPTWKGFGIPLVSRLC--DVENGSDVENLYLKLLSSFKMP 284

Query: 562 ESLMHADSFDPSSMVTTVDPSGEAHSN-SSSNIAKEDASSSKAVTLPNLPLQLVDESNVC 620
                A+  DP       D + +A ++ S+S  AKE   +++++  P L L L ++    
Sbjct: 285 TEFFTANLEDP----IEEDATDKAVTDGSTSTDAKE---TTESLPDPVLRLYLTEDRGNS 337

Query: 621 FDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPL 680
               +  +K +   S S  + V   W  K L+ Y+T  L  L EV K G  TK+ + E +
Sbjct: 338 IQSEILKEKPLN--SKSKVVNVLARWPVKELDAYDTCLLSYLPEVSKFG--TKRPQEESV 393

Query: 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKH 740
           SL  CLEA+L EEPL P++MW CP CK++RQA KKLDLWRLPE+LVIHLKRFS    + +
Sbjct: 394 SLDKCLEAYLAEEPLGPDNMWDCPGCKKKRQAIKKLDLWRLPEILVIHLKRFS----LNN 449

Query: 741 KLETFVNFPIHDFNLTKYVANKNSS--RRQLY 770
           KLE  V+FP+ D +L+ Y++ KN    R  LY
Sbjct: 450 KLEDDVDFPLDDLDLSSYISYKNGQTYRYMLY 481


>gi|338729116|ref|XP_001917109.2| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal
           hydrolase 11 [Equus caballus]
          Length = 960

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 297/923 (32%), Positives = 417/923 (45%), Gaps = 192/923 (20%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W+Q W  YV        GD  S            S  P  I+N+ L  D        G  
Sbjct: 100 WYQQWELYVQ------GGDQDS------------STFPGCINNAKLFEDQVNWRLKKG-- 139

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
               L+EG DY+LLP+  W+ L SWYG   G P + RKV+   LS  E  VEVYP+ L L
Sbjct: 140 ----LVEGEDYVLLPEAAWHYLVSWYGLEHGQPPIERKVVEL-LSIQE--VEVYPVELLL 192

Query: 118 LVMPRGEC-STIRISKKETIGELHRRACSIFYLN-LEQICIWDYYGHRKHALMNDMDRTL 175
           +     +   T + S  +++  + R A   F ++  E+  +W          + +   T+
Sbjct: 193 VQHSDMDTPCTAQFSHTDSVDLVLRTAREQFLVSPQEETRLWVKNAEGSFERLCNTRVTV 252

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA ++  Q +++E   N +GT                                 W    
Sbjct: 253 LDAALKTGQLVVMET-RNKDGT---------------------------------WP--- 275

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
                 S++  T+  +  + D +N  G  G+          GL NLGNTCFMNSA+QCL 
Sbjct: 276 ------SAQPHTTXAVRESED-ENFQGQPGIC---------GLTNLGNTCFMNSALQCLS 319

Query: 296 HTPEFARYF-REDYRREINWQNPLGMV--------------------------------- 321
           + P+   YF +  Y  E+N+ NPLGM                                  
Sbjct: 320 NVPQLTEYFLKNRYLEELNFCNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKTKVGH 379

Query: 322 --------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELL+FLLDGLHEDLNRVK K Y++  DA GRPD+EVA E W NH  
Sbjct: 380 FASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVELCDAAGRPDQEVAQEAWQNHKR 439

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDS+IVD   G +KSTLVCP C  VSVTFDPF YLS+PL  +  R M V   + D    
Sbjct: 440 RNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSVPLPVSHKRVMEVFFVSMDPRRK 499

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTIK 485
           P  + + VPK G+  DL   L     +   E + VA++ +H   +   L++   SLS+I 
Sbjct: 500 PEQHRLVVPKKGKISDLCVALAKHTGVS-PERMMVADVFSHRFYKIYQLEE---SLSSIL 555

Query: 486 DDDHLAAYRVP------KLVKKAVFLQLIHRLQEQEPGAAQTTSQWKA--YGTPLVSSIS 537
           D D +  Y V       +  ++ V L +   L+E+ P      S +    +G PL+ S+ 
Sbjct: 556 DRDDIFIYEVSGRSAIGENSREDVVLPIY--LRERTPARDYNNSYYGLMLFGHPLLVSVP 613

Query: 538 RDDV-------ISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSS 590
           RD +       I   ++   V R  S           +     S    +   G     SS
Sbjct: 614 RDRLSWDALYHILLYRLSRYVTRPSSDDEDDGDEKGEEEEGXESDKDNIPKPGHVAGGSS 673

Query: 591 SNIAKEDASSSKAVT---------------LPN-------LPLQLVDESNVCFDLSVEGD 628
            +   E A  S  V                 P          LQ V+ SN   D S   +
Sbjct: 674 QDPGPEQAGPSSGVAGGSRAPVDNSAGPSHWPQRARRKHLFTLQTVN-SNGTSDRSTFNE 732

Query: 629 KTIRIPSSSTSIVVYVDWSQKLLEKYNTHF-LENLLEVFKNGPVTKKARTEPLSLYTCLE 687
            T   P       + +DW  ++ ++Y      E  ++    G V KKA   P+ L  C+E
Sbjct: 733 DTHAQP------YIAIDWEPEMKKRYYDEVEAEGYVKHDCVGYVLKKA---PVRLQECIE 783

Query: 688 AFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVN 747
            F   E L  E+ WYCP CK+ + A+KKLDLW LPE L+IHLKRFSY++  + KL+T V 
Sbjct: 784 LFTTVETLEKENPWYCPSCKQHQLATKKLDLWMLPETLIIHLKRFSYTKFSREKLDTLVE 843

Query: 748 FPIHDFNLTKYVAN-KNSSRRQL--YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDD 804
           FPI D + +++V   +N S  +L  Y+L A++NHYGG+  GHYT      D  +W+ FDD
Sbjct: 844 FPIRDLDFSEFVIKPQNESAPELYKYDLIAVSNHYGGLRDGHYTTFACNKDSGQWHYFDD 903

Query: 805 SHISPINEDDVKSAAAYVLFYRR 827
           S +SP+ E+ ++S AAYVLFY+R
Sbjct: 904 SSVSPVTENQIESKAAYVLFYQR 926


>gi|410988427|ref|XP_004000487.1| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal
           hydrolase 11 [Felis catus]
          Length = 951

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 294/919 (31%), Positives = 420/919 (45%), Gaps = 182/919 (19%)

Query: 10  NQDQPNNTGDGSSLLE---------HFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
            +D+P   G+   L+E         +       ++  P  I+N+DL  D        G  
Sbjct: 80  GRDRPLRAGESWFLVEQHWYKQWEVYVQGGDKDSTAFPGCINNADLFEDQVNWRLKRG-- 137

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISS-GLSQTELAVEVYPLRLQ 116
               L+E  DY+LLP   W+ L  WYG   G P + RKV+   G+ +    VEVYP+ L 
Sbjct: 138 ----LVESEDYVLLPAAAWHCLVDWYGLEHGQPPIERKVVELLGIQK----VEVYPVELL 189

Query: 117 LLVMPRGECS-TIRISKKETIGELHRRACSIFYLN-LEQICIWDYYGHRKHALMNDMDRT 174
           L+     +   T + S  +++  + R A   F +N  E+  +W          + +   T
Sbjct: 190 LVRHSDMDTPYTAQFSHTDSVDLVLRTAREQFLVNPQEETRLWIKNAEGSFERLCNTRVT 249

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS 234
           L +A +Q  Q I++E   N +GT                      PS    +++      
Sbjct: 250 LLEAALQTGQLIIMET-RNKDGT---------------------WPSAQQQAVS------ 281

Query: 235 KGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCL 294
             T+     E    P                        G+ GL NLGNTCFMNSA+QCL
Sbjct: 282 --TASEEDEEFQGQP------------------------GICGLTNLGNTCFMNSALQCL 315

Query: 295 VHTPEFARYF-REDYRREINWQNPLGMV-------------------------------- 321
            + P+   YF +  Y  E+N+ NPLGM                                 
Sbjct: 316 SNVPQLTDYFLKNRYLEELNFCNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKTKVG 375

Query: 322 ---------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHI 366
                          ELL+FLLDGLHEDLNRVK K Y++  DA GRPD+EVA E W NH 
Sbjct: 376 HFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVELCDAAGRPDQEVAQEAWQNHK 435

Query: 367 ARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSA 426
            RNDS+IVD   G +KSTLVCP C  VSVTFDPF YLS+PL  +  R M V   + D   
Sbjct: 436 RRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSVPLPVSHKRVMEVFFVSMDPRR 495

Query: 427 LPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTI 484
            P  + + VPK G+  DL   L     +   E + VA++ +H   +   L++   SLS+I
Sbjct: 496 KPEQHRLVVPKKGKISDLCVALAKHTGVS-PERMMVADVFSHRFYKIYQLEE---SLSSI 551

Query: 485 KDDDHLAAYRVPKL------VKKAVFLQLIHRLQEQEPGAAQTTSQWK--AYGTPLVSSI 536
            D D +  Y V          ++ V L +   L+E+ P      S +    +G PL+ S+
Sbjct: 552 LDRDDIFIYEVSGRSAIGDNSREDVVLPIY--LRERTPARDYNNSYYGLMLFGHPLLVSV 609

Query: 537 SRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVT--TVDPSGEAHSNSSSNIA 594
            RD  +S   +   +   LS ++ + S    D  D   M    ++   G     SS +  
Sbjct: 610 PRDR-LSWDALYHILLYRLSRYVTRPSSDDEDDGDEKDMEDKDSIPKPGRVAGGSSQDSG 668

Query: 595 KEDASSSKAVT------LPNLP----------------LQLVDESNVCFDLSVEGDKTIR 632
            E A  S  V       + N P                LQ V+ SN   D S   + T  
Sbjct: 669 PEQAGPSSGVAGGSRAPVDNSPGPSHWPQRARRKHLFTLQTVN-SNGTSDRSTFNEDTHA 727

Query: 633 IPSSSTSIVVYVDWSQKLLEKYNTHF-LENLLEVFKNGPVTKKARTEPLSLYTCLEAFLR 691
            P       + +DW  ++ ++Y      E  ++    G V KKA   P+ L  C+E F  
Sbjct: 728 QP------YIAIDWEPEMKKRYYDEVEAEGYVKHDCVGYVLKKA---PVRLQECIELFTT 778

Query: 692 EEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIH 751
            E L  E+ WYCP CK+ + A+KKLDLW LPE L+IHLKRFSY++  + KL+T V FPI 
Sbjct: 779 VETLEKENPWYCPTCKQHQLATKKLDLWMLPETLIIHLKRFSYTKFSREKLDTLVEFPIR 838

Query: 752 DFNLTKYVAN-KNSSRRQL--YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHIS 808
           D + +++V   +N S  +L  Y+L A++NHYGG+  GHYT      D  +W+ FDD+ +S
Sbjct: 839 DLDFSEFVIKPQNESAPELYKYDLIAVSNHYGGLRDGHYTTFACNKDSGQWHYFDDNSVS 898

Query: 809 PINEDDVKSAAAYVLFYRR 827
           P+ E+ ++S AAYVLFY+R
Sbjct: 899 PVTENQIESKAAYVLFYQR 917


>gi|444525919|gb|ELV14207.1| Ubiquitin carboxyl-terminal hydrolase 11 [Tupaia chinensis]
          Length = 937

 Score =  363 bits (931), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 290/926 (31%), Positives = 416/926 (44%), Gaps = 201/926 (21%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV        GD  S            S  P  I+N+ L  D       AG  
Sbjct: 80  WYKQWEVYVQ------GGDQDS------------STFPGCINNAKLFEDQVNWRLKAG-- 119

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
               L+EG+DY+LLP   W+ L SWYG   G P + RKV+   LS  +  VEVYP+ L L
Sbjct: 120 ----LVEGKDYVLLPAAAWHYLVSWYGLEHGQPPIERKVVE--LSNIQ-KVEVYPVELLL 172

Query: 118 -----LVMPRGECSTIRISKKETIGELHRRACSIFYLN-LEQICIWDYYGHRKHALMNDM 171
                L  PR    T + S  ++I  + R A   F +   E+  +W          + + 
Sbjct: 173 VRHSDLRTPR----TAQFSHTDSIDVILRTAREQFLVGPKEETRLWVKNSEGSLDRLCNT 228

Query: 172 DRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGW 231
             T+ DA ++  Q +++E   N +GT                                 W
Sbjct: 229 HITVLDAALETGQLVIMET-RNKDGT---------------------------------W 254

Query: 232 SASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAI 291
            +++   +  +SE           + ++  G  G+          GL NLGNTCFMNSA+
Sbjct: 255 PSARLHVKKTTSE-----------EDEDFQGQPGIC---------GLTNLGNTCFMNSAL 294

Query: 292 QCLVHTPEFARYFRED-YRREINWQNPLGMV----------------------------- 321
           QCL + P+         Y  E+N+ NPLGM                              
Sbjct: 295 QCLSNVPQLTESSPPSRYLEELNFHNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKT 354

Query: 322 ------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWA 363
                             ELL+FLLDGLHEDLNRVK K Y++  DA GRPD+EVA E W 
Sbjct: 355 KVGHFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVELCDAAGRPDQEVAQEAWL 414

Query: 364 NHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSD 423
           NH  RNDS+IVD   G +KSTLVCP C  VSVTFDPF YLS+PL  +  R + V     D
Sbjct: 415 NHKRRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSVPLPVSHKRVLEVFFIPMD 474

Query: 424 GSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISL 481
               P  + + VPK G+  DL   L     +   E + VA++ +H   +   L++PL   
Sbjct: 475 PRRKPEQHRLVVPKKGKISDLCVALSKHTGIS-PERMMVADVFSHRFYKLYQLEEPL--- 530

Query: 482 STIKDDDHLAAYRVPKLV------KKAVFLQLIHRLQEQEPGAAQTTSQWKA--YGTPLV 533
           S I D D +  Y V   +      ++ + + +   L+E+ P      S +    +G PL+
Sbjct: 531 SGILDRDDIFVYEVSGRIEAIEGSREDIVVPVY--LRERTPARDYNNSYYGLMLFGHPLL 588

Query: 534 SSISRDDVISSGKIQSTVQRMLSPFLKKES------------------LMHADSFDPSSM 575
            S+ RD     G + + +   LS ++ K S                      +   PS+ 
Sbjct: 589 VSVPRDRFSWEG-LYNVLMYRLSRYVTKPSSDDEDDGDEKGDDDDDDEEDKDNMPGPSTS 647

Query: 576 VTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLP----------LQLVDESNVCFDLSV 625
               DP  E    SS   ++        +     P          LQ V+ +        
Sbjct: 648 GNLRDPEPEQAGPSSGATSRCPFLLDNCLGTSQWPPRRRRKQLFTLQTVNSNGT------ 701

Query: 626 EGDKTIRIPSSSTSIVVYVDWSQKLLEKY-NTHFLENLLEVFKNGPVTKKARTEPLSLYT 684
             D+T           + +DW  ++  +Y +    E  ++    G V KKA   P+ L  
Sbjct: 702 -SDRTTSAEDVHAQPYIAIDWEPEMKRRYYDEAEAEGYVKHDCVGYVLKKA---PVRLQE 757

Query: 685 CLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLET 744
           C+E F   E L  E+ WYCP CK+ + A+KKLDLW LPE+L+IHLKRFSY++  + KL+T
Sbjct: 758 CIELFTTVETLEKENPWYCPSCKKHQLATKKLDLWMLPEILIIHLKRFSYTKFSREKLDT 817

Query: 745 FVNFPIHDFNLTKYVAN-KNSSRRQL--YELYALTNHYGGMGSGHYTAHIKLLDENRWYN 801
            V FPI D + +++V   +N S  +L  Y+L A++NHYGGM  GHYT      D  +W+ 
Sbjct: 818 LVEFPIRDLDFSEFVIKPQNESAPELYKYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHY 877

Query: 802 FDDSHISPINEDDVKSAAAYVLFYRR 827
           FDD+ +SP+NE+ ++S AAYVLFY+R
Sbjct: 878 FDDNSVSPVNENQIESKAAYVLFYQR 903


>gi|148745324|gb|AAI42474.1| USP11 protein [Bos taurus]
          Length = 910

 Score =  360 bits (923), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 284/893 (31%), Positives = 415/893 (46%), Gaps = 171/893 (19%)

Query: 26  HFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSW 85
           +       +S  P  I+N++L  D        G      L+EG DY+LLP   W+ L +W
Sbjct: 64  YVRGGNQDSSTFPGCINNAELFEDQVNWRLKKG------LVEGEDYVLLPAAAWHYLVNW 117

Query: 86  YG---GGPTLARKVISSGLSQTELAVEVYPLRLQLLVMPRGECS-TIRISKKETIGELHR 141
           YG   G P + RKV+   L  T   VEVY + L L+     +   T + S+ +++  +  
Sbjct: 118 YGLEHGQPPIERKVVE--LPSTH-KVEVYSVELLLVRHSDMDTPHTAQFSQTDSVDLVLH 174

Query: 142 RACSIFYLN-LEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCK 200
            A   F ++  E+  +W          + +   T+ DA ++  Q +++E   N +GT   
Sbjct: 175 TAREQFLVSPQEETRLWIKNAEGSFERLCNTRVTVLDAALKTGQVVVMET-RNKDGTWPS 233

Query: 201 SSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNT 260
           +   D               ++S+L                              + ++ 
Sbjct: 234 AQPHD---------------TRSTLE-----------------------------EEEDF 249

Query: 261 LGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLG 319
            G  G+          GL NLGNTCFMNSA+QCL + P+   YF +  Y  E+N+ NPLG
Sbjct: 250 QGQPGI---------CGLTNLGNTCFMNSALQCLSNVPQLTEYFLKNRYLEELNFCNPLG 300

Query: 320 M-----------------------------------------------VELLAFLLDGLH 332
           M                                                ELL+FLLDGLH
Sbjct: 301 MKGEIAQAYADLVKQAWSGHHRSIVPQVFKTKVGHFASQFLGYQQHDSQELLSFLLDGLH 360

Query: 333 EDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNK 392
           EDLNR+K K Y++  DA GRPD+EVA E W NH  RNDS+IVD   G +KSTLVCP C  
Sbjct: 361 EDLNRIKKKEYVELCDAAGRPDQEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCGN 420

Query: 393 VSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNIC 452
           VSVTFDPF YLS+PL  +  R M V   + D    P  + + VPK G+  DL   L    
Sbjct: 421 VSVTFDPFCYLSVPLPVSHKRVMEVFFVSMDPRRKPEQHRLVVPKKGKISDLCVALAKHT 480

Query: 453 SLKQSEELKVAEIQNHSIQRF--LDDPLISLSTIKDDDHLAAYRVPKLV------KKAVF 504
            +   E + VA++ +H   +   L++   SLS+I D D +  Y V          ++ V 
Sbjct: 481 GIS-PERMMVADVFSHRFYKIYQLEE---SLSSILDRDDIFIYEVSGRAAIGENSREDVV 536

Query: 505 LQLIHRLQEQEPGAAQTTSQW--KAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKE 562
           L +   L+E+ P     +S +    +G PL+ S+ RD  +S   +   +   LS ++ + 
Sbjct: 537 LPIY--LRERTPARDYNSSYYGLMLFGHPLLVSVPRDR-LSWDALYHILLYRLSRYVTRP 593

Query: 563 S-----------LMHADSFDPSSMVT---TVDPSGEAHSNSSSNIAKEDASSSKAVTLPN 608
           S           L   D       VT   + DP  E    SS  +++  A    +    +
Sbjct: 594 SSDDEDDGDEKDLEDKDRLPKPGRVTAGSSQDPGLEQAGPSSRVVSRSRAPVDNSPGPSH 653

Query: 609 LP----------LQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHF 658
            P          L  V+ SN   D S   + T   P       + +DW  ++ ++Y    
Sbjct: 654 WPQRARRKHLFTLHTVN-SNGTSDRSTFNEDTHAQP------YIAIDWEPEMKKRYYDEV 706

Query: 659 -LENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLD 717
             E  ++    G V KKA   P+ L  C+E F   E L  E+ WYCP CK+ + A+KKLD
Sbjct: 707 EAEGYVKHDCVGYVLKKA---PVQLQECIELFTTVETLEKENPWYCPTCKQHQLATKKLD 763

Query: 718 LWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVAN-KNSSRRQL--YELYA 774
           LW LPE L+IHLKRFSY++  + KL+T V FPI D + +++V   +N S R+L  Y+L A
Sbjct: 764 LWMLPETLIIHLKRFSYTKFSREKLDTLVEFPIRDLDFSEFVIKPQNDSSRELYKYDLIA 823

Query: 775 LTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           ++NHYGG+  GHYT      D  +W+ FDDS +SP+ E+ ++S AAYVLFY+R
Sbjct: 824 VSNHYGGLRDGHYTTFACNKDSGQWHYFDDSSVSPVTENQIESKAAYVLFYQR 876


>gi|351696731|gb|EHA99649.1| Ubiquitin carboxyl-terminal hydrolase 15 [Heterocephalus glaber]
          Length = 899

 Score =  359 bits (922), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 284/888 (31%), Positives = 408/888 (45%), Gaps = 135/888 (15%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G              +  P  IDNS L+ D  A+       
Sbjct: 37  WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------S 78

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L
Sbjct: 79  LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKL 138

Query: 118 LVMPR-GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                     T R SK +TI  + +    IF +  E +  +W+ Y       +N  D T+
Sbjct: 139 CENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKYMSNTFEPLNKPDSTI 198

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E               ++G   +  S+  V+ S   L     ++A K
Sbjct: 199 QDAGLYQGQVLVIE------------QKNEDGTWPRGPSAPNVKNSNYCLP---SYTAYK 243

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
               +     +  P                        GL GL NLGNTCFMNSAIQCL 
Sbjct: 244 NYDYSEPGRNNEQP------------------------GLCGLSNLGNTCFMNSAIQCLS 279

Query: 296 HTPEFARYFRED-YRREINWQNPLGMVELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPD 354
           +TP    YF  D Y+ E+N+ NPLGM   +A     L      +K     K      R  
Sbjct: 280 NTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAEL------IKQMWSGKFSYVTPRAF 333

Query: 355 EEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRT 414
           + VA+E W NH+ RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT
Sbjct: 334 KVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERT 393

Query: 415 MTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-F 473
           + V +   D    P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R F
Sbjct: 394 LEVYLVRMDPLIKPMQYKVVVPKIGNILDLCTALSGLSGVP-ADKMIVTDIYNHRFHRIF 452

Query: 474 LDDPLISLSTIKDDDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPL 532
             D  +S    +DD ++    + +    + V + +  R + +       T     +G P 
Sbjct: 453 AVDENLSSIMERDDIYVFEININRTEDTENVIIPVCLREKFRHSSYTHHTGS-SLFGQPF 511

Query: 533 VSSISRDDVISSGKIQSTVQRMLSPFLK-------------------------------- 560
           + ++ R++  +  K+ + +   +  ++K                                
Sbjct: 512 LMAVPRNN--TEDKLYNLLLLRMCRYVKISTETEETEGSLHCCKDQNINGNGPNGIHEEG 569

Query: 561 KESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVC 620
             S M  D  D  S      PS   +S S  ++  ++ S +   T      QL       
Sbjct: 570 SPSEMETDEPDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEETCKGQLTGHKKRL 629

Query: 621 FDLSVEG-------------------DKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLEN 661
           F                         D+ +R+   S    + +DW  +L ++Y   F EN
Sbjct: 630 FTFQFNNLGNTDINYIKDDIRHIRFDDRQLRLDERS---FLALDWDPELKKRY---FDEN 683

Query: 662 LLEVF-KNGPVTKKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLW 719
             E F K+  V  K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW
Sbjct: 684 AAEDFEKHESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLW 743

Query: 720 RLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHY 779
            LP VLV+HLKRFSYSR M+ KL+T V+FPI+D ++++++ N N+   + Y L A++NHY
Sbjct: 744 SLPPVLVVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCR-YNLIAVSNHY 802

Query: 780 GGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           GGMG GHYTA  K  D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 803 GGMGGGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 850


>gi|145340853|ref|XP_001415532.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144575755|gb|ABO93824.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 688

 Score =  359 bits (922), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 230/641 (35%), Positives = 329/641 (51%), Gaps = 102/641 (15%)

Query: 266 VTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM---- 320
           V TRG +    GL NLGNTCFMNSA+QCL H+     YF  D Y  +IN  NP+GM    
Sbjct: 27  VGTRGKA----GLSNLGNTCFMNSALQCLSHSSLLTDYFLSDKYEVDINTDNPIGMGGEL 82

Query: 321 -------------------------------------------VELLAFLLDGLHEDLNR 337
                                                       ELLAFLLDGLHEDLNR
Sbjct: 83  AKEYANLIGALWRDGALTVTPRKFKSSLARFAPQFSGYMQQDAQELLAFLLDGLHEDLNR 142

Query: 338 VKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTF 397
           VK+KPY   +DA+GR DE+VA+E W  H ARN+S IVD  QGQY+S LVCP C+  SV F
Sbjct: 143 VKNKPYATERDAEGRSDEDVANESWEAHTARNNSCIVDTFQGQYRSKLVCPSCSNKSVKF 202

Query: 398 DPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQS 457
           DPFMYLS+P+ +   R + VT+ +        TY + +PK+G    L+  L     +   
Sbjct: 203 DPFMYLSIPVPSARERMIKVTLVSYGDELSAITYGLKLPKNGEIAMLLSALCEAADIDTM 262

Query: 458 EELKV-AEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVK----KAVFLQLIHRL- 511
           +E  V  E+ NH +++ L +   SL+ I++ D + A+R+P +      + V   L+HR  
Sbjct: 263 DERVVLCEVYNHRMEKTLSNMSYSLTDIRERDVIYAHRLPAIKDNDNVETVDTVLVHRKE 322

Query: 512 --QEQEP-----GAAQTTSQWKAYGTPLVSSISRDDVISSGKIQST-VQRMLSPFLKKES 563
             Q + P       A TT     +G P +  +S      +G   +  V++ +  F  K  
Sbjct: 323 LNQNKTPYSHVSSVAATT--MVRFGFPWIVPVSVPKGTKAGPDHARFVEKEVEKFSAK-- 378

Query: 564 LMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDL 623
             H +S + S   TT   SG+   ++S     E  S    +   N               
Sbjct: 379 FAHTNSMEKSCSPTT---SGDTEGSASRRAVAEKDSRLFKMKYTNKSASASFHEYGSTTA 435

Query: 624 SVEGDKTIRIPSSSTSIVVYVDWSQKLLEKY------------NTHFLENLLEVFKNGPV 671
           S      ++   +S+   V +DWS K L ++            +    EN +E       
Sbjct: 436 STSDSHEMQYTIASSMHCVAIDWSSKALSQFFDEELLEREIEEHPSVTENAIE------- 488

Query: 672 TKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKR 731
              + T+   L +C+E+F++EEPL  +DMWYC QCK+  QA KKLDLWR+P +LV+HLKR
Sbjct: 489 --NSGTQGTPLASCIESFIQEEPLGKDDMWYCKQCKDHVQAMKKLDLWRMPPILVMHLKR 546

Query: 732 FSYSRSMKHKLETFVNFPIHDFNLTKYV-ANKNSSRRQLYELYALTNHYGGMGSGHYTAH 790
           FSYSR+ + K++T ++FP++  ++T YV  N +S    +Y+LYA+ NH+GGMG GHYTA+
Sbjct: 547 FSYSRTWRDKIDTLIDFPLNTLDMTPYVLPNASSGPAPIYDLYAVVNHFGGMGGGHYTAY 606

Query: 791 IKLLDENRWYNFDDSHISPINEDDVKSA----AAYVLFYRR 827
            +  +E  W+ +DDS  + +   DV +A    AAYVLFY+R
Sbjct: 607 TRHAEEGTWHLYDDSRCTAV---DVGAALNNSAAYVLFYKR 644


>gi|76443681|ref|NP_001008861.2| ubiquitin carboxyl-terminal hydrolase 11 [Rattus norvegicus]
 gi|60422774|gb|AAH90333.1| Ubiquitin specific peptidase 11 [Rattus norvegicus]
 gi|149044387|gb|EDL97708.1| ubiquitin specific protease 11 [Rattus norvegicus]
          Length = 921

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 291/936 (31%), Positives = 425/936 (45%), Gaps = 190/936 (20%)

Query: 3   QHWIDYVN-QDQPNNTGDGSSLLE---------HFNSAGSSASKRPSGIDNSDLVNDATA 52
           Q W    N +++P   G+   L+E         +       AS  P  I+NS L  D  +
Sbjct: 32  QQWRQIGNGRERPLRAGESWFLVEKHWYKQWEAYVKGGDQDASTFPGSINNSGLFEDQIS 91

Query: 53  EDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVIS-SGLSQTELAV 108
                   + + L+EG DY+LLP   WN L SWYG     P + RKVI   G+ +    V
Sbjct: 92  W------HLRERLVEGDDYVLLPAPAWNYLVSWYGLKDDQPPIERKVIELPGIRK----V 141

Query: 109 EVYPLRLQLLVMPRGECS-TIRISKKETIGELHRRACSIFYLN-LEQICIWDYYGHRKHA 166
           EVYP+ L L+     E + TI+ S  +++  + + A   F +   E   +W         
Sbjct: 142 EVYPIELLLVQHSDMETALTIQFSYSDSVDLVLQTAREQFLVEPQEDTRLWTKNSEGSLD 201

Query: 167 LMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLS 226
            + +   TL DA ++  Q +++E   N +GT                             
Sbjct: 202 RLCNTQITLLDACLETGQLVIMET-RNKDGT----------------------------- 231

Query: 227 IAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCF 286
               W +++    N+  +           + ++  G  G+          GL NLGNTCF
Sbjct: 232 ----WPSAQLCGMNNMPD-----------EDEDFQGQPGI---------CGLTNLGNTCF 267

Query: 287 MNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM------------------------- 320
           MNSA+QCL + P+   YF  + Y  E+N++NPLGM                         
Sbjct: 268 MNSALQCLSNVPQLTEYFLNNRYLEELNFRNPLGMKGELAEAYADLVKQTWSGYHRSIVP 327

Query: 321 ----------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVA 358
                                  ELL+FLLDGLHEDLNRVK K Y++  +  GRPD EVA
Sbjct: 328 NVFKNKVGHFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVELCNGAGRPDLEVA 387

Query: 359 DEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVT 418
            E W NH  RNDS+IVD   G +KSTLVCP C  VSVTFDPF YLS+PL   + R + V 
Sbjct: 388 QEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSVPLPVCSRRVLEVF 447

Query: 419 VFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDD 476
               D    P  + V VPK G   DL   L    S+   +++ VA++ +H   +   L+D
Sbjct: 448 FVPMDPRRKPEQHRVVVPKKGNISDLCVALSTHTSVA-PDKMIVADVFSHRFYKLYQLED 506

Query: 477 PLISLSTIKDDDHLAAYRVPKLVKKAVF----LQLIHRLQEQEPGAAQTTSQWK--AYGT 530
           P   LS I D D +  Y V   ++        + +   L+E+ P      S +    +G 
Sbjct: 507 P---LSGILDRDDIFVYEVTGRIEPVEGSRDDIVVPVYLRERTPSRDYNNSYYGLILFGH 563

Query: 531 PLVSSISRDDVISSGKIQSTVQRMLSPFLKKES-------------LMHADSFDPSSMVT 577
           PL+ S+ RD     G + + +   LS ++ K +                    D SS   
Sbjct: 564 PLLVSVPRDRFSWEG-LYNILMYRLSRYVTKPTSDDDDGDEKGDENEDEDVEDDSSSEEE 622

Query: 578 TVDPSGEAHSNSSSNIAKEDASSSKAVT--LPNL--------------------PLQLVD 615
             + SG   ++ +    +E A +S  VT   P+L                     LQ V+
Sbjct: 623 KEEMSGPTDNDGTQESEQEQAGTSSGVTGRCPSLLDNSLHTSQWPPRRRRKQLFTLQTVN 682

Query: 616 ESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF-KNGPVTKK 674
            +          D+T     + T   + +DW  ++  +Y   + E   E + K+  V   
Sbjct: 683 SNGT-------SDRTTSPEEAQTQPYIAMDWEPEMKRRY---YDEVEAEGYVKHDCVGYM 732

Query: 675 ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            +  P+ L  C++ F   E L  E+ WYC  CK+ + A+KKLDLW LPEVL+IHLKRFS+
Sbjct: 733 LKKNPVQLKECIKLFTTVETLEKENPWYCSSCKQHQLATKKLDLWMLPEVLIIHLKRFSF 792

Query: 735 SRSMKHKLETFVNFPIHDFNLTKYVAN-KNSSRRQL--YELYALTNHYGGMGSGHYTAHI 791
           S+  + KL+T V FPI D + +++V   KN S   L  Y+L A++NHYGGM  GHYT   
Sbjct: 793 SKFSREKLDTLVQFPIRDLDFSEFVIKPKNESAPDLYKYDLIAVSNHYGGMRDGHYTTFA 852

Query: 792 KLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
              D  +W+ FDD+ +SP+NE+ ++S AAYVLFY+R
Sbjct: 853 CNKDSGQWHYFDDNSVSPVNENQIESKAAYVLFYQR 888


>gi|348553561|ref|XP_003462595.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 11-like isoform 1
           [Cavia porcellus]
          Length = 956

 Score =  357 bits (916), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 280/904 (30%), Positives = 412/904 (45%), Gaps = 190/904 (21%)

Query: 26  HFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSW 85
           +       AS  P  I+N++L  D        G      L+EG DY+LLP   W+ L SW
Sbjct: 108 YVQGGDQDASTFPGCINNAELFEDQINWCLKEG------LMEGEDYVLLPSAAWHYLVSW 161

Query: 86  YG---GGPTLARKVISSGLSQTELAVEVYPLRLQLLVMPRGECS---TIRISKKETIGEL 139
           YG   G P + RKVI      +   VEVYP++  LL++  G+     T + S  +++ ++
Sbjct: 162 YGLEPGQPPIERKVIE---LYSIPKVEVYPVK--LLLVQHGDTDLVLTAQFSLTDSVDQV 216

Query: 140 HRRACSIFYLNL-EQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTN 198
            R A   F ++  E   +W          + +   TL DA ++  Q I++E+ +      
Sbjct: 217 LRTAREQFLVDAQEDTRLWVKKSEGYLDRLFNTHVTLLDAALESGQLIIMEIRNK----- 271

Query: 199 CKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSD 258
                                         G W +++    +  SE           + +
Sbjct: 272 -----------------------------DGSWPSTQLRVVSRMSE-----------EDE 291

Query: 259 NTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNP 317
           +  G  G+          GL NLGNTCFMNSA+QCL + P+   YF ++ Y  E+N++NP
Sbjct: 292 DFQGQPGI---------CGLTNLGNTCFMNSALQCLSNVPQLTEYFLDNRYLEELNFRNP 342

Query: 318 LGM-----------------------------------------------VELLAFLLDG 330
           LGM                                                ELL+FLLDG
Sbjct: 343 LGMRGELAEAYADLVKQTWSGCHRSIVPNVFKNKVGRFASQFLGYQQHDSQELLSFLLDG 402

Query: 331 LHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVC 390
           LHEDLNRVK K Y++  DA GRPD+EVA E W NH  RNDS+IVD   G +KSTLVCP C
Sbjct: 403 LHEDLNRVKKKEYVELCDAAGRPDQEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDC 462

Query: 391 NKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGN 450
             VSVTFDPF YLS+PL     R + V     D    P  + V VPK G   DL   L  
Sbjct: 463 GNVSVTFDPFCYLSVPLPVCHKRVLEVFFVPMDPRRKPEQHRVVVPKKGNISDLCMALSK 522

Query: 451 ICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTIKDDDHLAAYRVPKLV------KKA 502
              +  ++++ V ++ +H   +   L+DP   LS I D D +  Y V   +      K  
Sbjct: 523 HTGIA-ADKMIVTDVFSHRFYKLYQLEDP---LSGILDRDDIFVYEVSGRIEPIEGSKDD 578

Query: 503 VFLQLIHRLQEQEPGAAQTTSQWK--AYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLK 560
           + + +   L+E+ P      S +    +G PL+ S+ +D +   G + + +   LS ++ 
Sbjct: 579 IVVPVY--LRERTPAQDYNNSYYGLILFGHPLLVSVPQDRLSWEG-LYNILMYRLSRYVT 635

Query: 561 KES-----------------LMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKA 603
           K +                      +  PS+     D   E    SS       A+ + +
Sbjct: 636 KPTSDEEDDGEEKEDDSSDEDEKDQTPGPSTRGNLRDSELEQAGPSSG------ATRTCS 689

Query: 604 VTLPN----------------LPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWS 647
             L N                  LQ V+ S +        D+        T   + +DW 
Sbjct: 690 FLLDNGFHTSHWPPKRRRKQLFTLQTVNSSGI-------SDRITSPEEVDTQPYIAMDWE 742

Query: 648 QKLLEK-YNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQC 706
            ++  + Y+    E  ++    G V KKA   P+ L  C+E F   E L  E+ WYC  C
Sbjct: 743 PEMKRRYYDEAEAEGYVKHECVGYVLKKA---PVQLQECIELFTTVETLEKENPWYCSSC 799

Query: 707 KERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVAN-KNSS 765
           K+ + A+KKLDLW LPE+L+IHLKRFS+S+    KL+T V+FPI D + +++V   +N S
Sbjct: 800 KQHQLATKKLDLWMLPEILIIHLKRFSFSKFSHEKLDTLVHFPIRDLDFSEFVIKPQNES 859

Query: 766 RRQL--YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVL 823
             +L  Y+L A++NHYGG+  GHYT      D  +W+ FDD+ +SP+NE+ ++S AAYVL
Sbjct: 860 APELYKYDLIAVSNHYGGIRDGHYTTFACNKDSGQWHYFDDNSVSPVNENQIESKAAYVL 919

Query: 824 FYRR 827
           FY+R
Sbjct: 920 FYQR 923


>gi|164663834|ref|NP_663603.3| ubiquitin carboxyl-terminal hydrolase 11 [Mus musculus]
 gi|342187159|sp|Q99K46.4|UBP11_MOUSE RecName: Full=Ubiquitin carboxyl-terminal hydrolase 11; AltName:
           Full=Deubiquitinating enzyme 11; AltName: Full=Ubiquitin
           thioesterase 11; AltName:
           Full=Ubiquitin-specific-processing protease 11
 gi|148668416|gb|EDL00740.1| ubiquitin specific peptidase 11, isoform CRA_a [Mus musculus]
          Length = 921

 Score =  356 bits (913), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 285/903 (31%), Positives = 410/903 (45%), Gaps = 180/903 (19%)

Query: 26  HFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSW 85
           +       AS  P  I+N+ L  D  +        + + LLEG DY+LLP   WN + SW
Sbjct: 65  YVKGGDQDASTFPGCINNAGLFEDQISW------HLRERLLEGDDYVLLPAPAWNYMVSW 118

Query: 86  YG---GGPTLARKVIS-SGLSQTELAVEVYPLRLQLLVMPRGECS-TIRISKKETIGELH 140
           YG   G P + RKVI   G+ +    VEVYPL L L+     E + TI+ S  +++  + 
Sbjct: 119 YGLMDGQPPIERKVIELPGIRK----VEVYPLELLLVQHSDMETALTIQFSYTDSVELVL 174

Query: 141 RRACSIFYLN-LEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNC 199
           + A   F +   E   +W          + +   TL DA ++  Q +++E   N +GT  
Sbjct: 175 QTAREQFLVEPQEDTRLWTKNSEGSLDRLCNTQITLLDACLETGQLVIMET-RNKDGT-- 231

Query: 200 KSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDN 259
                                          W +++    N+  +           + ++
Sbjct: 232 -------------------------------WPSAQLCGMNNIPD-----------EDED 249

Query: 260 TLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPL 318
             G  G+          GL NLGNTCFMNSA+QCL + P+   YF  + Y  E+N++NPL
Sbjct: 250 FQGQPGI---------CGLTNLGNTCFMNSALQCLSNVPQLTEYFLNNRYLEELNFRNPL 300

Query: 319 GM-----------------------------------------------VELLAFLLDGL 331
           GM                                                ELL+FLLDGL
Sbjct: 301 GMKGELAEAYADLVKQTWSGYHRSIVPNVFKNKVGHFASQFLGYQQHDSQELLSFLLDGL 360

Query: 332 HEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCN 391
           HEDLNRVK K Y++  +  GRPD EVA E W NH  RNDS+IVD   G +KSTLVCP C 
Sbjct: 361 HEDLNRVKKKEYVELCNGAGRPDLEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCG 420

Query: 392 KVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNI 451
            VSVTFDPF YLS+PL   + R + V     D    P  + V VPK G   DL   L   
Sbjct: 421 NVSVTFDPFCYLSVPLPVCSRRVLEVFFVPMDPRRKPEQHRVVVPKKGNISDLCVALSTH 480

Query: 452 CSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTIKDDDHLAAYRVPKLVKKAVF----L 505
            S+   +++ VA++ +H   +   L+DP   LS I D D +  Y V   ++        +
Sbjct: 481 TSVA-PDKMIVADVFSHRFYKLYQLEDP---LSGILDRDDIFVYEVTGRIEPVEGSRDDI 536

Query: 506 QLIHRLQEQEPGAAQTTSQWK--AYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKES 563
            +   L+E+ P      S +    +G PL+ S+ RD     G     + R LS ++ K +
Sbjct: 537 VVPVYLRERTPSRDYNNSYYGLILFGHPLLVSVPRDRFSWEGLYNILMYR-LSRYVTKPT 595

Query: 564 -------------LMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVT--LPN 608
                               D SS     + S    ++ +    +E A +S  VT   P+
Sbjct: 596 SDEDDGDEKVDEDEDEDVEDDSSSEEEKEEMSAPTVNDGTREAEQEQAGTSSGVTERCPS 655

Query: 609 L--------------------PLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQ 648
           L                     LQ V+ +          D+T       T   + +DW  
Sbjct: 656 LLDNSLRASQWPPRRRRKQLFTLQTVNSNGT-------SDRTTSPEEMQTQPYIAMDWEP 708

Query: 649 KLLEKYNTHFLENLLEVF-KNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCK 707
            +  +Y   + E   E + K+  V    +  P+ L  C++ F   E L  E+ WYC  CK
Sbjct: 709 DMKRRY---YDEVEAEGYVKHDCVGYMLKKSPVQLKECIKLFTTVETLEKENPWYCSSCK 765

Query: 708 ERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVAN-KNSSR 766
           + + A+KKLDLW LPEVL+IHLKRFS+S+  + KL+T V FPI D + +++V   KN S 
Sbjct: 766 QHQLATKKLDLWMLPEVLIIHLKRFSFSKISREKLDTLVQFPIRDLDFSEFVIKPKNESS 825

Query: 767 RQL--YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLF 824
             L  Y+L A++NHYGGM  GHYT      D  +W+ FDD+ +SP+NE+ ++S AAYVLF
Sbjct: 826 PDLYKYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYFDDNSVSPVNENQIESKAAYVLF 885

Query: 825 YRR 827
           Y+R
Sbjct: 886 YQR 888


>gi|351699503|gb|EHB02422.1| Ubiquitin carboxyl-terminal hydrolase 11, partial [Heterocephalus
           glaber]
          Length = 911

 Score =  354 bits (909), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 280/900 (31%), Positives = 408/900 (45%), Gaps = 182/900 (20%)

Query: 26  HFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSW 85
           +       AS  P  I+N++L  +        G      L+EG+DY+LLP   W+ L SW
Sbjct: 63  YVQGGDQDASTFPGCINNAELFEEQINWCLKEG------LMEGKDYVLLPAAAWHYLVSW 116

Query: 86  YG---GGPTLARKVISSGLSQTELAVEVYPLRLQLLVMPRGECSTI---RISKKETIGEL 139
           YG   G P + RKVI      +   VEVYP++L  L++  G+  T+   + S  +++  L
Sbjct: 117 YGLEHGQPPIERKVIEL---YSIPKVEVYPVKL--LLVQHGDTETVLTAQFSLADSVDLL 171

Query: 140 HRRACSIFYLNLEQIC-IWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTN 198
                  F ++ E+   +W          + +   TL DA ++  Q +++E+ +      
Sbjct: 172 LHTVREQFLVDAEEDARLWVKNSEGCLDRLCNTHVTLLDAALETGQLVIMEIRNK----- 226

Query: 199 CKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSD 258
                                         G W          S+++    N+A   + +
Sbjct: 227 -----------------------------DGSWP---------STQLCVMSNMAE--EDE 246

Query: 259 NTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNP 317
           +  G  G+          GL NLGNTCFMNS +QCL   P+   YF ++ Y  E+N+ NP
Sbjct: 247 DFQGQPGIC---------GLTNLGNTCFMNSTLQCLSSVPQLTEYFLDNRYLEELNFCNP 297

Query: 318 LGM-----------------------------------------------VELLAFLLDG 330
           LGM                                                ELL+FLLDG
Sbjct: 298 LGMKGELAEAYADLVKQTWSGCHRSVVPNVFKNKVSHFASQFLGYQQHDSQELLSFLLDG 357

Query: 331 LHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVC 390
           LHEDLNRVK K Y++  DA GRPD+EVA E W NH  RNDS+IVD   G +KSTLVCP C
Sbjct: 358 LHEDLNRVKKKEYVELCDAAGRPDQEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDC 417

Query: 391 NKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGN 450
             VSVTFDPF YLS+PL     R + V     D    P  + V VPK G   DL   L  
Sbjct: 418 GNVSVTFDPFCYLSVPLPVCHKRVLEVFFVPMDPRRKPEQHRVVVPKKGNISDLCMALSK 477

Query: 451 ICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTIKDDDHLAAYRVPKLV------KKA 502
              +   +++ VA++ +H   +   L+DPL   S I D D +  Y V   +      K  
Sbjct: 478 HTGVL-PDKMIVADVFSHRFYKLYQLEDPL---SDILDRDDIFVYEVSGRIEPIEGSKDD 533

Query: 503 VFLQLIHRLQEQEPGAAQTTSQWKA---YGTPLVSSISRDDVISSGKIQSTVQRMLSPFL 559
           + + +   L+E+ P  AQ  + +     +G PL+ S+ +D +   G     + R LS ++
Sbjct: 534 IVVPVY--LRERTP--AQDYNSYYGLMLFGHPLLVSVPQDRLSWEGLYNILMYR-LSRYV 588

Query: 560 KKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIA------KEDASSSKAVT------LP 607
            K +    D  +        D   +      S +       +E A  S   T      L 
Sbjct: 589 TKPTSDEEDVGEEKGEDGNSDEEEKDQMPGPSTVGNFRDSEREQAGPSSGTTGRCPFFLD 648

Query: 608 N----------------LPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLL 651
           N                  LQ VD +          D+T       T   + +DW  ++ 
Sbjct: 649 NCFRTSHWPPERRRKQLFTLQAVDSNGT-------SDRTTSPEEVDTQPYIAMDWEPEMK 701

Query: 652 EKYNTHFLENLLEVF-KNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERR 710
            +Y   + E   E + K+  V    +  P+ L  C+E F   E L  E+ WYC  CK+ +
Sbjct: 702 RRY---YDEAEAEGYVKHECVDYVLKKVPVQLQECIELFTTVETLEKENPWYCSSCKQHQ 758

Query: 711 QASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVAN-KNSSRRQL 769
            A+KKLDLW LPE+L+IHLKRFS+S+    KL+T V+FPI D + + +V   +N S  +L
Sbjct: 759 LATKKLDLWMLPEILIIHLKRFSFSKFSHEKLDTLVHFPIRDLDFSDFVIKPQNESAPEL 818

Query: 770 --YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             Y+L A++NHYGG+  GHYT      D  +W+ FDDS +SP+NE+ ++S AAYVLFY+R
Sbjct: 819 YKYDLIAVSNHYGGIRDGHYTTFACNKDSGQWHYFDDSSVSPVNENQIESKAAYVLFYQR 878


>gi|391331221|ref|XP_003740048.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4-like
           [Metaseiulus occidentalis]
          Length = 908

 Score =  351 bits (901), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 268/898 (29%), Positives = 411/898 (45%), Gaps = 167/898 (18%)

Query: 1   WWQHWIDYV--NQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDL-VNDATAEDPGA 57
           W++ W  YV  NQ +  + G+ S+               P  I+NS L +     ED   
Sbjct: 50  WFKQWKKYVGFNQWETGSVGEPSA--------------NPGPINNSGLLIEHDNPED--- 92

Query: 58  GPEIVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLR 114
              + + L++  DY+L+P+E W +L  WYG   G   +AR V+  G+    L VE+Y + 
Sbjct: 93  ---LREHLIDELDYVLMPEEAWTKLVEWYGLAAGQKPIARTVVDFGMFLKNLKVEIYRME 149

Query: 115 LQLLVMPR-GECSTIRISKKETIGELHRRACSIFYL-NLEQICIWDYYGHRKHALMNDMD 172
           L+L + P   +  T R SK  T+ E+ +    +F +    +  +W+ +      +M + +
Sbjct: 150 LKLCLNPNLKDAKTYRFSKVATVEEVEKVCRKLFNVPESAKTRLWNRFSTNTLEIMTEKN 209

Query: 173 RTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWS 232
           RT+ D ++   Q +++EV  N +GT                                 W 
Sbjct: 210 RTIQDESLYSAQILVLEV-QNPDGT---------------------------------WP 235

Query: 233 ASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQ 292
                 RN S+   T   +       +  GS   +      GL GL NLGNTCFMNSA+Q
Sbjct: 236 ------RNSSNPPDTRKAVEQNYMVSSAAGSKIPSYSSTGAGLCGLTNLGNTCFMNSALQ 289

Query: 293 CLVHTPEFARYFRED-YRREINWQNPLGM------------------------------- 320
           C+ +TP    YF  D +  EIN  NPLGM                               
Sbjct: 290 CMSNTPVLTEYFLSDMHVNEINRDNPLGMHGEIAESYANLIKAMWSGNHTSFALKVFKQK 349

Query: 321 ----------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWAN 364
                            EL++FLLDGLHEDLNRVK KPYI++K+++GRPD  +A E W+N
Sbjct: 350 VGRFAPQFNGYMQQDCQELMSFLLDGLHEDLNRVKKKPYIEAKNSEGRPDHVLAKEAWSN 409

Query: 365 HIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDG 424
           ++ RNDSI+VD   G  KSTLVCP C+ VSVTFDPF YLSLPL     R + V  F    
Sbjct: 410 YLKRNDSIVVDTFHGLLKSTLVCPECDHVSVTFDPFCYLSLPLPNRKERVVNVIAFML-T 468

Query: 425 SALPSTYTVTVPKHGRC--RDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLS 482
           +  P    + VP   RC   D   ++      K    +      + +++R ++       
Sbjct: 469 NPRPIKLRINVPP-DRCTWNDFYSMIVRTLMTKHRNLVIAQVCADKTVERVIEPSDDKFE 527

Query: 483 TIKDDDHLAAYRVPKLVKKAV--FLQLIHRLQEQEPGAAQTTSQWKAYGTPLV----SSI 536
              D  H+  Y  P    K     +++  R+      +    +  K +G P      + +
Sbjct: 528 ETTDSLHV--YETPCWPWKGAGSLVRVYTRVISNNQDSDNAFTYAKIFGVPFYVYFQNRM 585

Query: 537 SRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSM-VTTVD-----PSGEAHSNSS 590
           +  D I +  +     R +SP   KE  + A+S + + M V T D     P     S   
Sbjct: 586 TTVDAIYNTCLSWLKGRFVSP---KE--VQAESDEETQMEVDTEDGKEERPEKFKQSLFE 640

Query: 591 SNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKL 650
            NI  E A++       ++ L+    + V  D   E  + I   S  TS +         
Sbjct: 641 VNIVNEMANTRMPTARNHVRLE--KRAFVTLDCLPEVKEAIFEESKCTSYMS-------- 690

Query: 651 LEKYNTHFLENLLEVFKNGPVTKKART-EPLSLYTCLEAFLREEPLVPEDMWYCPQCKER 709
                           ++ P T ++ T +P+ L  CL+ F   E L  +D+W+CP CK++
Sbjct: 691 ----------------RDHPRTNRSYTKQPIELSECLDLFTTMEQLGTDDLWFCPVCKKQ 734

Query: 710 RQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQL 769
           +QA+K+ +LW LP +L+IHLKRFS++R  + KL+  VNFP+ D ++ K+V +    +   
Sbjct: 735 QQATKRFNLWSLPPILIIHLKRFSFNRYFREKLDVVVNFPVKDLSMGKWVLDP-KHKSVP 793

Query: 770 YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           Y+L  + NH G +G+GHYTA+ K     +W +FDD ++S I+E+D+ S  AYVLFY+R
Sbjct: 794 YDLIGVANHTGNLGAGHYTAYAKNKITKKWNHFDDLNVSSISENDIVSKQAYVLFYQR 851


>gi|452824759|gb|EME31760.1| ubiquitin carboxyl-terminal hydrolase 4/11/15 [Galdieria sulphuraria]
          Length = 1022

 Score =  349 bits (895), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 283/941 (30%), Positives = 436/941 (46%), Gaps = 168/941 (17%)

Query: 35   SKRPSGIDNSDLVNDATAEDPGAGP-EIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLA 93
            ++RP  IDN+ LV      D  +   E+   LLE  D++L+P+ VW  L SWYGGGP ++
Sbjct: 85   TQRPGPIDNAYLVKSIEEVDQSSEQVELKPNLLEQVDFVLVPKAVWELLFSWYGGGPEIS 144

Query: 94   RKVISSGLSQTELAVEVYPLRLQL-LVMPRGEC-STIRISKKETIGELHRRACSIFYLNL 151
            R V+       E  VE+YP+ L +  + P     +TI +SK   I EL  +   +  LN+
Sbjct: 145  RPVVLG--PSGECFVEIYPVELNISFICPSKTVETTIHLSKTTKIKELKNKV--LLKLNI 200

Query: 152  EQICI-----WDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQD- 205
              + +     W+        L+++ + T+ +A +   Q + + V    N  N  S   D 
Sbjct: 201  NNVTVSDLEVWNMLDDVPPVLLDNDEETVAEAVLVSGQKVQIRV----NPQNSNSHFSDL 256

Query: 206  ----------NGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASAR 255
                         ++ K ++          S+       K  S   S   S   +++S R
Sbjct: 257  KQETHLDDDNTSCSQGKLTNTNTTNKTVIRSVKRALLKEKIASNGESEHTSCMKDISSHR 316

Query: 256  DSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINW 314
                   +S    +    GL GL+NLGNTCFMN+A+QCL +  +   YF  E Y+ +IN 
Sbjct: 317  LFFLPPMNSSAFKKA---GLCGLVNLGNTCFMNAALQCLSNAAKLTEYFLSEKYKSDINK 373

Query: 315  QNPLGMV-----------------------------------------------ELLAFL 327
            +NPLGM                                                EL+AFL
Sbjct: 374  RNPLGMKGVLAEEYFRLLSHIWSGNESSFAPRQLKFQIALHAPQFTGYQQQDSQELMAFL 433

Query: 328  LDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVC 387
            LDGLHEDLNR+++KPYI+  +   RPD+EVA   W  H+ RN+SI+VD+ QGQYKST++C
Sbjct: 434  LDGLHEDLNRIRNKPYIEVIEGGDRPDDEVASIAWKQHLQRNNSIVVDLFQGQYKSTVIC 493

Query: 388  PVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVF----------TSDGSALPSTYTVTVPK 437
            P C KVSVTFDPFMYLSLP+ + + R + + VF            +  + P  Y + V +
Sbjct: 494  PDCGKVSVTFDPFMYLSLPVPSKSERMIEILVFLRRAERDKLYCHEFQSRPVRYAIRVNR 553

Query: 438  HGR---CRDLIQVLGN------ICSLKQSEEL---------KVAEIQNHSIQ-RFL---- 474
             GR    RD +  L        IC++               +V EI N + Q RF+    
Sbjct: 554  KGRIGEVRDRVSALTGVPSSRLICAILFLNRFYQVPVPDWNRVDEIINLAGQERFVIYEV 613

Query: 475  DDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQ----TTSQWKAYGT 530
            +   IS   ++    +   R   + +K + L+++H  +  +   A     T ++++  G 
Sbjct: 614  EYDWISGRKLQHGG-VDTGRSSSIKEKEILLKIVHTEKNSDRVIAVPTLFTLNRYELTGN 672

Query: 531  PLVSSI--------SRDDVISSGKI-------QSTVQRMLSPFLKKESLMHADSFDPSSM 575
             ++  I          D  +  GKI       Q    ++L   L  E  +     D S+ 
Sbjct: 673  RVLKEIMFVCRRFFDYDKFLELGKIGKEEGDDQEWNGQVLEHDLHSEEAVELPVADDSAT 732

Query: 576  VTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFD-LSVEGDKT--IR 632
             + +   G      +S I ++  S SK      +  +    S   FD + ++ D T  I 
Sbjct: 733  ASHLVVPG------NSRIGRKRKSRSKFPFEAKISFERTQGSGHTFDSIVIDCDSTHIID 786

Query: 633  IPSSSTSIVVYVDWS-----QKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLE 687
            +P  ST+ VV V+W+     ++L +     F   +L+   +    + +   P ++  CL 
Sbjct: 787  LPDCSTATVV-VEWTLEGICKQLFDMEEASFRAYVLDHSISQSTQENSDAYP-TIEDCLR 844

Query: 688  AFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVN 747
             +  +E L  ++ W+CP CK+ +QASK L LW  PE+L+IHLKRFSYS   + K+ETFV 
Sbjct: 845  RWSEKEILSQDNAWFCPVCKDHKQASKHLQLWSTPEILIIHLKRFSYSIWSRTKVETFVK 904

Query: 748  FPIHDFNLTKYVANKN--SSRRQLYELYALTNHYGGMGSGHYTAH----IKLLDE----- 796
            +P++  NL  Y+  K    + + LY+LYA+ NH+GG+G GHYTA+     K+ D+     
Sbjct: 905  YPLNGLNLAPYIVGKGDIGAPQPLYDLYAVCNHFGGLGGGHYTAYSVSPWKVSDDESDPY 964

Query: 797  ---------NRWYNFDDSHISPI-NEDDVKSAAAYVLFYRR 827
                       WYNFDDS +  + N     S +AYVLFYRR
Sbjct: 965  FESNDGYLNGSWYNFDDSSVLKMANSSQAVSDSAYVLFYRR 1005


>gi|426257123|ref|XP_004022184.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 11 isoform 2 [Ovis
           aries]
          Length = 802

 Score =  347 bits (890), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 236/640 (36%), Positives = 326/640 (50%), Gaps = 98/640 (15%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV----------- 321
           G+ GL NLGNTCFMNSA+QCL + P+   YF +  Y  E+N+ NPLGM            
Sbjct: 141 GICGLTNLGNTCFMNSALQCLSNVPQLTEYFLKNRYLEELNFCNPLGMKGEIAQAYADLV 200

Query: 322 ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                               ELL+FLLDGLHEDLNRVK K Y++
Sbjct: 201 KQAWSGHHRSIVPQVFKTKVGHFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVE 260

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
             DA GRPD+EVA E W NH  RNDS+IVD   G +KSTLVCP C  VSVTFDPF YLS+
Sbjct: 261 LCDAAGRPDQEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSV 320

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
           PL  +  R M V   + D    P  + + VPK G+  DL   L     +   E + VA++
Sbjct: 321 PLPVSHKRVMEVFFVSMDPRRKPEQHRLVVPKKGKISDLCVALAKHTGIS-PERMMVADV 379

Query: 466 QNHSIQRF--LDDPLISLSTIKDDDHLAAYRVPKLV------KKAVFLQLIHRLQEQEPG 517
            +H   +   L++   SLS+I D D +  Y V          ++ V L +   L+E+ P 
Sbjct: 380 FSHRFYKIYQLEE---SLSSILDRDDIFIYEVSGRAAIGENSREDVVLPIY--LRERTPA 434

Query: 518 AAQTTSQW--KAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKES-----------L 564
               +S +    +G PL+ S+ RD  +S   +   +   LS ++ + S           L
Sbjct: 435 RDYNSSYYGLMLFGHPLLVSVPRDR-LSWDALYHILLYRLSRYVTRPSSDDEDDGDEKDL 493

Query: 565 MHADSFDPSSMVT---TVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLP----------L 611
              DS      VT   + DP  E    SS  ++   A    +    + P          L
Sbjct: 494 EDKDSLPKPGHVTEGSSQDPGLEQAGPSSRVVSGSRAPVDNSPGPSHWPQRARRKHLFTL 553

Query: 612 QLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHF-LENLLEVFKNGP 670
             V+ SN   D S   + T  +  SS   +  +DW  ++ ++Y      E  ++    G 
Sbjct: 554 HTVN-SNGTSDRSTFNEDTHGVSFSSQPYIA-IDWEPEMKKRYYDEVEAEGYVKHDCVGY 611

Query: 671 VTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLK 730
           V KKA   P+ L  C+E F   E L  E+ WYCP CK+ + A+KKLDLW LPE L+IHLK
Sbjct: 612 VLKKA---PVQLQECIELFTTVETLEKENPWYCPTCKQHQLATKKLDLWMLPETLIIHLK 668

Query: 731 RFSYSRSMKHKLETFVNFPIHDFNLTKYVAN-KNSSRRQL--YELYALTNHYGGMGSGHY 787
           RFSY++  + KL+T V FPI D + +++V   +N S R+L  Y+L A++NHYGG+  GHY
Sbjct: 669 RFSYTKFSREKLDTLVEFPIRDLDFSEFVIKPQNDSARELYKYDLIAVSNHYGGLRDGHY 728

Query: 788 TAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           T      D  +W+ FDDS +SP+ E+ ++S AAYVLFY+R
Sbjct: 729 TTFACNKDSGQWHYFDDSSVSPVTENQIESKAAYVLFYQR 768


>gi|193786257|dbj|BAG51540.1| unnamed protein product [Homo sapiens]
          Length = 689

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 228/631 (36%), Positives = 315/631 (49%), Gaps = 86/631 (13%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV----------- 321
           G+ GL NLGNTCFMNSA+QCL + P+   YF  + Y  E+N++NPLGM            
Sbjct: 34  GICGLTNLGNTCFMNSALQCLSNVPQLTEYFLNNCYLEELNFRNPLGMKGEIAEAYADLV 93

Query: 322 ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                               ELL+FLLDGLHEDLNRVK K Y++
Sbjct: 94  KQAWSGHHRSIVPHVFKNKVGHFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVE 153

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
             DA GRPD+EVA E W NH  RNDS+IVD   G +KSTLVCP C  VSVTFDPF YLS+
Sbjct: 154 LCDAAGRPDQEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSV 213

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
           PL  +  R + V     D    P  + + VPK G+  DL   L     +   E + VA++
Sbjct: 214 PLPISHKRVLEVFFIPMDPRRKPEQHRLVVPKKGKISDLCVALSKHTGIS-PERMMVADV 272

Query: 466 QNHSIQRF--LDDPLISLSTIKDDDHLAAYRVPKLV------KKAVFLQLIHRLQEQEPG 517
            +H   +   L++PL   S+I D D +  Y V   +      ++ + + +   L+E+ P 
Sbjct: 273 FSHRFYKLYQLEEPL---SSILDRDDIFVYEVSGRIEAIEGSREDIVVPVY--LRERTPA 327

Query: 518 AAQTTSQW--KAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSM 575
                S +    +G PL+ S+ RD     G     + R+     K  S    D  +    
Sbjct: 328 RDYNNSYYGLMLFGHPLLVSVPRDRFTWEGLYNVLMYRLSRYVTKPNSDDEDDGDEKDDE 387

Query: 576 VTTVDPSGEAHSNSSSNIAKEDASSSKAVT--LPNLPLQLVDESN--------VCFDLSV 625
               D  G +   S  +   E A  S  VT   P L    +  S           F L  
Sbjct: 388 EDKDDVPGPSTGGSLRDPEPEQAGPSSGVTNRCPFLLDNCLGTSQWPPRRRRKQLFTLQT 447

Query: 626 -----EGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHF-LENLLEVFKNGPVTKKARTEP 679
                  D+T           + +DW  ++ ++Y      E  ++    G V KKA   P
Sbjct: 448 VNSNGTSDRTTSPEEVHAQPYIAIDWEPEMKKRYYDEVEAEGYVKHDCVGYVMKKA---P 504

Query: 680 LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
           + L  C+E F   E L  E+ WYCP CK+ + A+KKLDLW LPE+L+IHLKRFSY++  +
Sbjct: 505 VRLQECIELFTTVETLEKENPWYCPSCKQHQLATKKLDLWMLPEILIIHLKRFSYTKFSR 564

Query: 740 HKLETFVNFPIHDFNLTKYVAN-KNSSRRQL--YELYALTNHYGGMGSGHYTAHIKLLDE 796
            KL+T V FPI D + +++V   +N S  +L  Y+L A++NHYGGM  GHYT      D 
Sbjct: 565 EKLDTLVEFPIRDLDFSEFVIQPQNESNPELYKYDLIAVSNHYGGMRDGHYTTFACNKDS 624

Query: 797 NRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            +W+ FDD+ +SP+NE+ ++S AAYVLFY+R
Sbjct: 625 GQWHYFDDNSVSPVNENQIESKAAYVLFYQR 655


>gi|355728062|gb|AES09403.1| ubiquitin specific peptidase 4 [Mustela putorius furo]
          Length = 684

 Score =  345 bits (886), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 227/640 (35%), Positives = 317/640 (49%), Gaps = 103/640 (16%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV----------- 321
           GL GL NLGNTCFMNSA+QCL +T     YF +++Y  EIN  NPLGM            
Sbjct: 21  GLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELI 80

Query: 322 ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                               ELLAFLLDGLHEDLNRVK KPY++
Sbjct: 81  KQMWSGRDSHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLE 140

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
            KDA+GRPD  VA E W NH  RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+L
Sbjct: 141 LKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTL 200

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
           PL     R M V +  +D    P+ Y V VP  G   DL + L  +  +   E + V ++
Sbjct: 201 PLPLKKDRVMEVFLVPADPRCRPTQYRVVVPLMGAVSDLCEALSRLSGVA-VENMVVTDV 259

Query: 466 QNHSIQRF--LDDPLISLSTIKDDDHLAAYRVPKLV---KKAVFLQLIHRLQEQEPGAAQ 520
            NH   +   +D+    L+ I   D +  Y V        + V L +  R ++  P  + 
Sbjct: 260 YNHRFHKIFQMDE---GLNHIMPRDDIFVYEVCGTSADGSECVTLPVYFRERKSRP--SS 314

Query: 521 TTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRM---LSPFLKKESLMHADSFDPSS--- 574
           T+S    YG PL+ S+ +  +      Q+  +R+   +   L +ES       +P +   
Sbjct: 315 TSSGAVLYGQPLLVSVPKHKLTLESLYQAVCERISRYIKQPLPEES--GGSPLEPGACNG 372

Query: 575 ---------------------MVTTVDPSGE-----AHSNSSSNIAKEDASSSKAVTLPN 608
                                 ++  + SGE      H  ++    K      +  T   
Sbjct: 373 SRGSCEGEDEEEMEHQEEGKEQLSETEGSGEDELSGDHGETTQKKVKGQPCPKRLFT--- 429

Query: 609 LPLQLVDESNVCFDLSVEGD-KTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFK 667
               LV+        S+  D K +++ S ST   + +DW  +    Y         E   
Sbjct: 430 --FSLVNSYGTADINSLATDGKLLKLNSRST---LAIDWDSETRSLYYDEQESEAYEKHV 484

Query: 668 NGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVI 727
           +    +K +   ++L  C+E F   E L   D WYCP CK+ +QA+KK DLW LP++LV+
Sbjct: 485 SMLQPQKKKKTAVALRDCIELFTTMETLGEHDPWYCPTCKKHQQATKKFDLWSLPKILVV 544

Query: 728 HLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHY 787
           HLKRFSY+R  + KL+T V FP+   N++++V +  S+R  +Y+L A++NHYG MG GHY
Sbjct: 545 HLKRFSYNRYWRDKLDTVVEFPVRALNMSEFVCDL-SARPYVYDLIAVSNHYGAMGVGHY 603

Query: 788 TAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           TA+ K     +WY FDDS++S  +ED + + AAYVLFY+R
Sbjct: 604 TAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQR 643


>gi|119936054|gb|ABM06064.1| ubiquitin specific protease 11 [Bos taurus]
          Length = 802

 Score =  345 bits (884), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 233/640 (36%), Positives = 325/640 (50%), Gaps = 98/640 (15%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV----------- 321
           G+ GL NLGNTCFMNSA+QCL + P+   YF +  Y  E+N+ NPLGM            
Sbjct: 141 GICGLTNLGNTCFMNSALQCLSNVPQLTEYFLKNRYLEELNFCNPLGMKGEIAQAYADLV 200

Query: 322 ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                               ELL+FLLDGLHEDLNR+K K Y++
Sbjct: 201 KQAWSGHHRSIVPQVFKTKVGHFASQFLGYQQHDSQELLSFLLDGLHEDLNRIKKKEYVE 260

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
             DA GRPD+EVA E W NH  RNDS+IVD   G +KSTLVCP C  VSVTFDPF YLS+
Sbjct: 261 LCDAAGRPDQEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSV 320

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
           PL  +  R M V   + D    P  + + VPK G+  DL   L     +   E + VA++
Sbjct: 321 PLPVSHKRVMEVFFVSMDPRRKPEQHRLVVPKKGKISDLCVALAKHTGIS-PERMMVADV 379

Query: 466 QNHSIQRF--LDDPLISLSTIKDDDHLAAYRVPKLV------KKAVFLQLIHRLQEQEPG 517
            +H   +   L++   SLS+I D D +  Y V          ++ V L +   L+E+ P 
Sbjct: 380 FSHRFYKIYQLEE---SLSSILDRDDIFIYEVSGRAAIGENSREDVVLPIY--LRERTPA 434

Query: 518 AAQTTSQW--KAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKES-----------L 564
               +S +    +G PL+ S+ RD  +S   +   +   LS ++ + S           L
Sbjct: 435 RDYNSSYYGLMLFGHPLLVSVPRDR-LSWDALYHILLYRLSRYVTRPSSDDEDDGDEKDL 493

Query: 565 MHADSFDPSSMVT---TVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLP----------L 611
              D       VT   + DP  E     S  +++  A    +    + P          L
Sbjct: 494 EDKDRLPKPGRVTAGSSQDPGLEQAGPXSRVVSRSRAPVDNSPGPSHWPQRARRKHLFTL 553

Query: 612 QLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHF-LENLLEVFKNGP 670
             V+ SN   D S   + T  +  SS   +  +DW  ++ ++Y      E  ++    G 
Sbjct: 554 HTVN-SNGTSDRSTFNEDTHGVSFSSQPYIA-IDWEPEMKKRYYDEVEAEGYVKHDCVGY 611

Query: 671 VTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLK 730
           V KKA   P+ L  C+E F   E L  E+ WYCP CK+ + A+KKLDLW LPE L+IHLK
Sbjct: 612 VLKKA---PVQLQECIELFTTVETLEKENPWYCPTCKQHQLATKKLDLWMLPETLIIHLK 668

Query: 731 RFSYSRSMKHKLETFVNFPIHDFNLTKYVAN-KNSSRRQL--YELYALTNHYGGMGSGHY 787
           RFSY++  + KL+T V FPI D + +++V   +N S R+L  Y+L A++NHYGG+  GHY
Sbjct: 669 RFSYTKFSREKLDTLVEFPIRDLDFSEFVIKPQNDSSRELYKYDLIAVSNHYGGLRDGHY 728

Query: 788 TAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           T      D  +W+ FDDS +SP+ E+ ++S AAYVLFY+R
Sbjct: 729 TTFACNKDSGQWHYFDDSSVSPVTENQIESKAAYVLFYQR 768


>gi|426257121|ref|XP_004022183.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 11 isoform 1 [Ovis
           aries]
          Length = 756

 Score =  344 bits (883), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 235/640 (36%), Positives = 324/640 (50%), Gaps = 103/640 (16%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV----------- 321
           G+ GL NLGNTCFMNSA+QCL + P+   YF +  Y  E+N+ NPLGM            
Sbjct: 100 GICGLTNLGNTCFMNSALQCLSNVPQLTEYFLKNRYLEELNFCNPLGMKGEIAQAYADLV 159

Query: 322 ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                               ELL+FLLDGLHEDLNRVK K Y++
Sbjct: 160 KQAWSGHHRSIVPQVFKTKVGHFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVE 219

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
             DA GRPD+EVA E W NH  RNDS+IVD   G +KSTLVCP C  VSVTFDPF YLS+
Sbjct: 220 LCDAAGRPDQEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSV 279

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
           PL  +  R M V   + D    P  + + VPK G+  DL   L     +   E + VA++
Sbjct: 280 PLPVSHKRVMEVFFVSMDPRRKPEQHRLVVPKKGKISDLCVALAKHTGIS-PERMMVADV 338

Query: 466 QNHSIQRF--LDDPLISLSTIKDDDHLAAYRVPKLV------KKAVFLQLIHRLQEQEPG 517
            +H   +   L++   SLS+I D D +  Y V          ++ V L +   L+E+ P 
Sbjct: 339 FSHRFYKIYQLEE---SLSSILDRDDIFIYEVSGRAAIGENSREDVVLPIY--LRERTPA 393

Query: 518 AAQTTSQW--KAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKES-----------L 564
               +S +    +G PL+ S+ RD  +S   +   +   LS ++ + S           L
Sbjct: 394 RDYNSSYYGLMLFGHPLLVSVPRDR-LSWDALYHILLYRLSRYVTRPSSDDEDDGDEKDL 452

Query: 565 MHADSFDPSSMVT---TVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLP----------L 611
              DS      VT   + DP  E    SS  ++   A    +    + P          L
Sbjct: 453 EDKDSLPKPGHVTEGSSQDPGLEQAGPSSRVVSGSRAPVDNSPGPSHWPQRARRKHLFTL 512

Query: 612 QLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHF-LENLLEVFKNGP 670
             V+ SN   D S   + T   P       + +DW  ++ ++Y      E  ++    G 
Sbjct: 513 HTVN-SNGTSDRSTFNEDTHAQP------YIAIDWEPEMKKRYYDEVEAEGYVKHDCVGY 565

Query: 671 VTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLK 730
           V KKA   P+ L  C+E F   E L  E+ WYCP CK+ + A+KKLDLW LPE L+IHLK
Sbjct: 566 VLKKA---PVQLQECIELFTTVETLEKENPWYCPTCKQHQLATKKLDLWMLPETLIIHLK 622

Query: 731 RFSYSRSMKHKLETFVNFPIHDFNLTKYVAN-KNSSRRQL--YELYALTNHYGGMGSGHY 787
           RFSY++  + KL+T V FPI D + +++V   +N S R+L  Y+L A++NHYGG+  GHY
Sbjct: 623 RFSYTKFSREKLDTLVEFPIRDLDFSEFVIKPQNDSARELYKYDLIAVSNHYGGLRDGHY 682

Query: 788 TAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           T      D  +W+ FDDS +SP+ E+ ++S AAYVLFY+R
Sbjct: 683 TTFACNKDSGQWHYFDDSSVSPVTENQIESKAAYVLFYQR 722


>gi|122692453|ref|NP_001073777.1| ubiquitin carboxyl-terminal hydrolase 11 [Bos taurus]
 gi|119936039|gb|ABM06061.1| ubiquitin specific protease 11 [Bos taurus]
 gi|296470784|tpg|DAA12899.1| TPA: ubiquitin specific peptidase 11 [Bos taurus]
          Length = 756

 Score =  343 bits (881), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 233/640 (36%), Positives = 324/640 (50%), Gaps = 103/640 (16%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV----------- 321
           G+ GL NLGNTCFMNSA+QCL + P+   YF +  Y  E+N+ NPLGM            
Sbjct: 100 GICGLTNLGNTCFMNSALQCLSNVPQLTEYFLKNRYLEELNFCNPLGMKGEIAQAYADLV 159

Query: 322 ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                               ELL+FLLDGLHEDLNR+K K Y++
Sbjct: 160 KQAWSGHHRSIVPQVFKTKVGHFASQFLGYQQHDSQELLSFLLDGLHEDLNRIKKKEYVE 219

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
             DA GRPD+EVA E W NH  RNDS+IVD   G +KSTLVCP C  VSVTFDPF YLS+
Sbjct: 220 LCDAAGRPDQEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSV 279

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
           PL  +  R M V   + D    P  + + VPK G+  DL   L     +   E + VA++
Sbjct: 280 PLPVSHKRVMEVFFVSMDPRRKPEQHRLVVPKKGKISDLCVALAKHTGIS-PERMMVADV 338

Query: 466 QNHSIQRF--LDDPLISLSTIKDDDHLAAYRVPKLV------KKAVFLQLIHRLQEQEPG 517
            +H   +   L++   SLS+I D D +  Y V          ++ V L +   L+E+ P 
Sbjct: 339 FSHRFYKIYQLEE---SLSSILDRDDIFIYEVSGRAAIGENSREDVVLPIY--LRERTPA 393

Query: 518 AAQTTSQW--KAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKES-----------L 564
               +S +    +G PL+ S+ RD  +S   +   +   LS ++ + S           L
Sbjct: 394 RDYNSSYYGLMLFGHPLLVSVPRDR-LSWDALYHILLYRLSRYVTRPSSDDEDDGDEKDL 452

Query: 565 MHADSFDPSSMVT---TVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLP----------L 611
              D       VT   + DP  E    SS  +++  A    +    + P          L
Sbjct: 453 EDKDRLPKPGRVTAGSSQDPGLEQAGPSSRVVSRSRAPVDNSPGPSHWPQRARRKHLFTL 512

Query: 612 QLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHF-LENLLEVFKNGP 670
             V+ SN   D S   + T   P       + +DW  ++ ++Y      E  ++    G 
Sbjct: 513 HTVN-SNGTSDRSTFNEDTHAQP------YIAIDWEPEMKKRYYDEVEAEGYVKHDCVGY 565

Query: 671 VTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLK 730
           V KKA   P+ L  C+E F   E L  E+ WYCP CK+ + A+KKLDLW LPE L+IHLK
Sbjct: 566 VLKKA---PVQLQECIELFTTVETLEKENPWYCPTCKQHQLATKKLDLWMLPETLIIHLK 622

Query: 731 RFSYSRSMKHKLETFVNFPIHDFNLTKYVAN-KNSSRRQL--YELYALTNHYGGMGSGHY 787
           RFSY++  + KL+T V FPI D + +++V   +N S R+L  Y+L A++NHYGG+  GHY
Sbjct: 623 RFSYTKFSREKLDTLVEFPIRDLDFSEFVIKPQNDSSRELYKYDLIAVSNHYGGLRDGHY 682

Query: 788 TAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           T      D  +W+ FDDS +SP+ E+ ++S AAYVLFY+R
Sbjct: 683 TTFACNKDSGQWHYFDDSSVSPVTENQIESKAAYVLFYQR 722


>gi|1276912|gb|AAC50450.1| UHX1 protein [Homo sapiens]
 gi|119579692|gb|EAW59288.1| ubiquitin specific peptidase 11, isoform CRA_a [Homo sapiens]
 gi|194378128|dbj|BAG57814.1| unnamed protein product [Homo sapiens]
 gi|1588732|prf||2209322A UHX1 gene
          Length = 690

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 226/639 (35%), Positives = 315/639 (49%), Gaps = 101/639 (15%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV----------- 321
           G+ GL NLGNTCFMNSA+QCL + P+   YF  + Y  E+N++NPLGM            
Sbjct: 34  GICGLTNLGNTCFMNSALQCLSNVPQLTEYFLNNCYLEELNFRNPLGMKGEIAEAYADLV 93

Query: 322 ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                               ELL+FLLDGLHEDLNRVK K Y++
Sbjct: 94  KQAWSGHHRSIVPHVFKNKVGHFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVE 153

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
             DA GRPD+EVA E W NH  RNDS+IVD   G +KSTLVCP C  VSVTFDPF YLS+
Sbjct: 154 LCDAAGRPDQEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSV 213

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
           PL  +  R + V     D    P  + + VPK G+  DL   L     +   E + VA++
Sbjct: 214 PLPISHKRVLEVFFIPMDPRRKPEQHRLVVPKKGKISDLCVALSKHTGIS-PERMMVADV 272

Query: 466 QNHSIQRF--LDDPLISLSTIKDDDHLAAYRVPKLV------KKAVFLQLIHRLQEQEPG 517
            +H   +   L++PL   S+I D D +  Y V   +      ++ + + +   L+E+ P 
Sbjct: 273 FSHRFYKLYQLEEPL---SSILDRDDIFVYEVSGRIEAIEGSREDIVVPVY--LRERTPA 327

Query: 518 AAQTTSQW--KAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSF----- 570
                S +    +G PL+ S+ RD     G     + R+     K  S    D       
Sbjct: 328 RDYNNSYYGLMLFGHPLLVSVPRDRFTWEGLYNVLMYRLSRYVTKPNSDDEDDGDEKEDD 387

Query: 571 --------DPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLP----------LQ 612
                    PS+  +  DP  E    SS    +        +     P          LQ
Sbjct: 388 EEDKDDVPGPSTGGSLRDPEPEQAGPSSGVTNRCPFLLDNCLGTSQWPPRRRRKQLFTLQ 447

Query: 613 LVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHF-LENLLEVFKNGPV 671
            V+ +          D+T           + +DW  ++ ++Y      E  ++    G V
Sbjct: 448 TVNSNGT-------SDRTTSPEEVHAQPYIAIDWEPEMKKRYYDEVEAEGYVKHDCVGYV 500

Query: 672 TKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKR 731
            KKA   P+ L  C+E F   E L  E+ WYCP CK+ + A+KKLDLW LPE+L+IHLKR
Sbjct: 501 MKKA---PVRLQECIELFTTVETLEKENPWYCPSCKQHQLATKKLDLWMLPEILIIHLKR 557

Query: 732 FSYSRSMKHKLETFVNFPIHDFNLTKYVAN-KNSSRRQL--YELYALTNHYGGMGSGHYT 788
           FSY++  + KL+T V FPI D + +++V   +N S  +L  Y+L A++NHYGGM  GHYT
Sbjct: 558 FSYTKFSREKLDTLVEFPIRDLDFSEFVIQPQNESNPELYKYDLIAVSNHYGGMRDGHYT 617

Query: 789 AHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
                 D  +W+ FDD+ +SP+NE+ ++S AAYVLFY+R
Sbjct: 618 TFACNKDSGQWHYFDDNSVSPVNENQIESKAAYVLFYQR 656


>gi|55846814|gb|AAV67411.1| ubiquitin-specific protease 11 [Macaca fascicularis]
          Length = 679

 Score =  343 bits (879), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 226/639 (35%), Positives = 315/639 (49%), Gaps = 101/639 (15%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV----------- 321
           G+ GL NLGNTCFMNSA+QCL + P+   YF  + Y  E+N++NPLGM            
Sbjct: 31  GICGLTNLGNTCFMNSALQCLSNVPQLTEYFLNNCYLEELNFRNPLGMKGEIAEAYADLV 90

Query: 322 ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                               ELL+FLLDGLHEDLNRVK K Y++
Sbjct: 91  KQAWSGHHRSIVPHVFKNKVGHFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVE 150

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
             DA GRPD+EVA E W NH  RNDS+IVD   G +KSTLVCP C  VSVTFDPF YLS+
Sbjct: 151 LCDAAGRPDQEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSV 210

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
           PL  +  R + V     D    P  + + VPK G+  DL   L     +   E + VA++
Sbjct: 211 PLPISHKRVLEVFFIPMDPRRKPEQHRLVVPKKGKISDLCVALSKHTGIS-PERMMVADV 269

Query: 466 QNHSIQRF--LDDPLISLSTIKDDDHLAAYRVPKLV------KKAVFLQLIHRLQEQEPG 517
            +H   +   L++PL   S+I D D +  Y V   +      ++ + + +   L+E+ P 
Sbjct: 270 FSHRFYKLYQLEEPL---SSILDRDDIFVYEVSGRIEAIEGSREDIVVPVY--LRERTPA 324

Query: 518 AAQTTSQWKA--YGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSF----- 570
                S +    +G PL+ S+ RD     G     + R+     K  S    D       
Sbjct: 325 RDYNNSYYGLMLFGHPLLVSVPRDRFTWEGLYNVLMYRLSRYVSKPNSDDEDDGDEKEDD 384

Query: 571 --------DPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLP----------LQ 612
                    PS+  +  DP  E    SS    +        +     P          LQ
Sbjct: 385 EEDKDDVPGPSTGGSLRDPEPEQAGPSSGVTNRCPFLLDNCLGTSQWPPRRRRKQLFTLQ 444

Query: 613 LVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHF-LENLLEVFKNGPV 671
            V+ +          D+T           + +DW  ++ ++Y      E  ++    G V
Sbjct: 445 TVNSNGT-------SDRTTSPEEVHAQPYIAIDWEPEMKKRYYDEIEAEGYVKHDCVGYV 497

Query: 672 TKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKR 731
            KKA   P+ L  C+E F   E L  E+ WYCP CK+ + A+KKLDLW LPE+L+IHLKR
Sbjct: 498 MKKA---PVRLQECIELFTTVETLEKENPWYCPSCKQHQLATKKLDLWMLPEILIIHLKR 554

Query: 732 FSYSRSMKHKLETFVNFPIHDFNLTKYVAN-KNSSRRQL--YELYALTNHYGGMGSGHYT 788
           FSY++  + KL+T V FPI D + +++V   +N S  +L  Y+L A++NHYGGM  GHYT
Sbjct: 555 FSYTKFSREKLDTLVEFPIRDLDFSEFVIQPQNESNPELYKYDLIAVSNHYGGMRDGHYT 614

Query: 789 AHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
                 D  +W+ FDD+ +SP+NE+ ++S AAYVLFY+R
Sbjct: 615 TFACNKDSGQWHYFDDNSVSPVNENQIESKAAYVLFYQR 653


>gi|417412856|gb|JAA52787.1| Putative ubiquitin carboxyl-terminal hydrolase 11, partial
           [Desmodus rotundus]
          Length = 833

 Score =  341 bits (875), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 236/640 (36%), Positives = 323/640 (50%), Gaps = 103/640 (16%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV----------- 321
           G+ GL NLGNTCFMNSA+QCL + P+   YF +  Y  E+N+ NPLGM            
Sbjct: 175 GICGLTNLGNTCFMNSALQCLSNVPQLTEYFLKNRYLEELNFCNPLGMKGEIAEAYADLV 234

Query: 322 ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                               ELL+FLLDGLHEDLNRVK K Y++
Sbjct: 235 KQAWSGHHRSIVPNVFKTKVGHFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVE 294

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
             DA GRPD EVA E W NH  RNDS+IVD   G +KSTLVCP C  VSVTFDPF YLS+
Sbjct: 295 LCDAAGRPDHEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSV 354

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
           PL  +  R M V   + D    P  + + VPK G+  DL   L     +   E + VA++
Sbjct: 355 PLPVSHKRVMEVFFVSMDPRRKPEQHRLVVPKKGKISDLCVALAKHTGVS-PERMMVADV 413

Query: 466 QNHSIQRF--LDDPLISLSTIKDDDHLAAYRVP------KLVKKAVFLQLIHRLQEQEPG 517
            +H   +   L++   SLS+I D D +  Y V       +  ++ V L +   L+E+ P 
Sbjct: 414 FSHRFYKIYQLEE---SLSSILDRDDIFIYEVSGRSSISENTREDVVLPIY--LRERTPA 468

Query: 518 AAQTTSQWKA--YGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSM 575
                S +    +G PL+ S+ RD  +S   +   +   LS ++ + S    D  D   M
Sbjct: 469 RDYNNSYYGLMLFGHPLLVSVPRDR-LSWDALYHILLYRLSRYVTRPSSDDEDDGDEKDM 527

Query: 576 V--TTVDPSGEAHSNSSSNIAKEDASSSKAVT------LPNLP----------------L 611
               ++   G     SS N   E A  S  V       + N P                L
Sbjct: 528 EGKNSIPKPGNVAGGSSHNSGPEQAGPSSGVAGGSRAPVNNSPGPSHWPQRARRKHLFTL 587

Query: 612 QLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHF-LENLLEVFKNGP 670
           Q V+ SN   D S   + T   P       + +DW  ++ ++Y      E  ++    G 
Sbjct: 588 QTVN-SNGTSDRSNFNEDTHAQP------YIAIDWEPEMKKRYYDEVEAEGYVKHDCVGY 640

Query: 671 VTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLK 730
           V KKA   P+ L  C+E F   E L  E+ WYCP CK+ + A+KKLDLW LPE L+IHLK
Sbjct: 641 VLKKA---PVRLQECIELFTTVETLEKENPWYCPSCKQHQLATKKLDLWTLPETLIIHLK 697

Query: 731 RFSYSRSMKHKLETFVNFPIHDFNLTKYVAN-KNSSRRQL--YELYALTNHYGGMGSGHY 787
           RFSY++  + KL+T V FPI D + +++V   +N S  +L  Y+L A++NHYGG+  GHY
Sbjct: 698 RFSYTKFSREKLDTLVEFPIRDLDFSEFVIKPQNESAPELYKYDLIAVSNHYGGLRDGHY 757

Query: 788 TAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           T      D  +W+ FDDS +SP++E+ ++S AAYVLFY+R
Sbjct: 758 TTFACNKDSGQWHYFDDSSVSPVSENQIESKAAYVLFYQR 797


>gi|198423782|ref|XP_002128421.1| PREDICTED: similar to ubiquitin specific peptidase 15 [Ciona
           intestinalis]
          Length = 923

 Score =  337 bits (864), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 256/891 (28%), Positives = 414/891 (46%), Gaps = 147/891 (16%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W+  W  YV  D     G G         + ++++  P  IDN+D+  D T E      +
Sbjct: 45  WYDQWKKYVEND-----GYGWE-------SKNNSNLNPGPIDNTDIFTDETYE------Q 86

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + D L E  ++++LP+  W  L + YG    G  + RKVI  G    +  VE+YP++L+L
Sbjct: 87  MKDNLSEDVEFVMLPKTGWEYLVNTYGLVADGMAIERKVIEQGSFFKKCVVEIYPMQLRL 146

Query: 118 LVMP-RGECSTIRISKKETIGELHRRACSIFYLNLEQ-ICIWDYYGHRKHALMNDMDRTL 175
                R E      SK+ T+GE+       F +  E  + +W  Y       + +  +++
Sbjct: 147 SPYDNRKEVVKRNFSKRNTVGEIEEEVRKTFQIPEETPVKLWSAYLPSSLESL-EKHKSV 205

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
           +D+ +Q  Q ++                    F  KK    +  P+ ++  +        
Sbjct: 206 EDSALQPGQVVV--------------------FETKKDGKWMHTPTPTTSYV-------- 237

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
             S N  +    S N    R++  T G      R ++ GL GL NLGNTCFMNSA+QCL 
Sbjct: 238 --SSNSQNGAHKSVNTYGLRNTSPTRG------RVSTAGLCGLNNLGNTCFMNSALQCLS 289

Query: 296 HTPEFARYF-REDYRREINWQNPLGM---------------------------------- 320
           + P    YF  E Y++E+N  NPLGM                                  
Sbjct: 290 NVPALCNYFLNETYKKELNKTNPLGMGGKLAKAYARLVQSIWSGEQSSFAPREFKMEVGR 349

Query: 321 -------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELL+FL+DGLHEDLNR+  KPY++ K+ADGR D+ VA+E W+NH  
Sbjct: 350 FAPRFSGYQQHDSQELLSFLVDGLHEDLNRISKKPYVEMKEADGRDDQLVAEESWSNHHL 409

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDSIIVD   G ++S + CP C ++SVTFDPF ++SLPL     RT+  +         
Sbjct: 410 RNDSIIVDTLHGLFRSKVDCPECPRISVTFDPFCFISLPLPLKRQRTLECSFVPLKYDGK 469

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDD 487
              Y VTV K G   DL + +  + ++  S E+   ++ N    +    P   ++ I + 
Sbjct: 470 IYKYQVTVNKTGCIXDLCKAVSELNNIP-STEMTATDVYNSRFHKVFK-PNEGINGIYEK 527

Query: 488 DHLAAY-RVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGK 546
           D++  + + P +    V+++ +         ++   S    +G P +  +   +  +  +
Sbjct: 528 DYIHVFQKPPNMTMVPVYMRHL--------SSSGPNSSAHLFGQPFLVPVDIRNT-TYRQ 578

Query: 547 IQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTL 606
           +  TV +    ++K + L      D + ++   +   +       +  +       ++ +
Sbjct: 579 LYKTVLKATWRYIKDDELKS----DVARLICDEEYMDDKAEEDDEDCVQPSVHRLFSLKV 634

Query: 607 PN----LPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLE-KYNTHFLEN 661
            N      L+++ E++   DLS              +  +  DWS  + E +   H   +
Sbjct: 635 VNSFGTQLLRVLHETDSPLDLS-------------ENTYITADWSYYVYEHQLMQHHWSD 681

Query: 662 LLEVFKN-GPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWR 720
           + E  ++      +     + L+ C+  F  EE L  +D WYC  CK+ +QA+KK DLW 
Sbjct: 682 VSESHESMAACNIRKANSGVQLHDCMRLFTTEEQLDKDDAWYCSDCKKHQQATKKFDLWM 741

Query: 721 LPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSR----RQLYELYALT 776
           LP VL+IHLKRFSY+R  + KL+T VNFP  D +L+ ++ N N       ++ Y L A++
Sbjct: 742 LPPVLIIHLKRFSYTRYSRDKLDTLVNFPTRDLDLSDFIVNPNKGSLPKPKRCYNLIAVS 801

Query: 777 NHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           NHYGG+G GHYTA+ K   + +W+ FDDS +S  +ED V + AAY+L Y+R
Sbjct: 802 NHYGGLGGGHYTAYAKNHIDKQWHYFDDSSVSLSSEDRVVTKAAYMLVYQR 852


>gi|414868202|tpg|DAA46759.1| TPA: hypothetical protein ZEAMMB73_550567 [Zea mays]
          Length = 525

 Score =  335 bits (860), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 212/496 (42%), Positives = 263/496 (53%), Gaps = 92/496 (18%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           WW  W  YV          G S  E F      A+ RP  IDNS LV  A   +    PE
Sbjct: 51  WWMEWQGYVGL-----VNYGESGTEQF----PQATNRPGEIDNSKLVL-AERINGSEEPE 100

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVM 120
           +  TL EG  Y L+PQEVW +L+ WY GGP + RKVI    +     V+VYPL L+L+  
Sbjct: 101 LQRTLREGEHYTLVPQEVWQRLYEWYKGGPEIPRKVIFDNPTDKTYVVDVYPLCLKLIDA 160

Query: 121 PRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANI 180
                   RIS+K  + EL+   CS+  +   +I IWDYY   K   + + + TL++A +
Sbjct: 161 RDDSEKVFRISRKAKVHELYSMVCSLMSVEQSEIVIWDYYRRTKGKELTNQNDTLEEAQL 220

Query: 181 QMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVL----VEPSKSSLSIAGG----WS 232
            MDQ+IL+E+         K     +GF+ +  +  L    +EPS SS SIAGG      
Sbjct: 221 SMDQEILLEM---------KLGGGSSGFSARSTNDELALIPLEPSTSSFSIAGGPTFSNG 271

Query: 233 ASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQ 292
            S G   + S + S SP L    D  N+L +    T+  + GL+GL NLGNTCFMNSAIQ
Sbjct: 272 FSSGIGSSFSQDNSFSPLLRDGEDGYNSLSNG---TKDDTHGLSGLHNLGNTCFMNSAIQ 328

Query: 293 CLVHTPEFARYFREDYRREINWQNPLGM-------------------------------- 320
            LVHTP   +YF EDY  EIN +NPLG+                                
Sbjct: 329 SLVHTPPLVQYFLEDYTCEINKENPLGLQGELAIAFGELLRKLWSSGRTSIAPRAFKSKL 388

Query: 321 ---------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANH 365
                           ELLAFLLDGLHEDLNRVK KPYI++KDADGRPD+E A+E W  H
Sbjct: 389 SRFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKEKPYIEAKDADGRPDDEFAEECWNYH 448

Query: 366 IARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGS 425
            ARNDSIIVD  QGQYKSTLVCPVCNK+SVTFDPFMYLSLPL +        TV++ D  
Sbjct: 449 KARNDSIIVDKFQGQYKSTLVCPVCNKISVTFDPFMYLSLPLPS--------TVYSDD-- 498

Query: 426 ALPSTYTVTVPKHGRC 441
                Y   +  +GRC
Sbjct: 499 -----YCNCIQWYGRC 509


>gi|395856541|ref|XP_003800686.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Otolemur
           garnettii]
          Length = 936

 Score =  334 bits (857), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 284/919 (30%), Positives = 415/919 (45%), Gaps = 157/919 (17%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 41  WFKQWKKYVGFD----SWDVYNVGEH--------NLFPGPIDNSGLFSDPESQ------T 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 83  LKEHLIDELDYVLVPAEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 142

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  + +  +W+ Y    +  ++ +D T
Sbjct: 143 CENSDPTNVLS-CHFSKADTIATIEKEMRKLFNIPADRETRLWNKYMSNTYEQLSKLDNT 201

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNG-------FAEKKASSVLVEPSKSSLSI 227
           + DA +   Q +++E   N +GT  + ++Q          F     SS     S S+  I
Sbjct: 202 VQDAGLYQGQVLVIEP-QNEDGTWPRQTLQSKSSTVPSRNFTTSPKSSASPYSSVSASPI 260

Query: 228 AGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFM 287
           A G   S  TS  HSS +S   +  SA  +     SS +       GL GL NLGNTCFM
Sbjct: 261 ANG--DSTNTSGMHSSGVSRGGSGFSASYNCQEPPSSHIQP-----GLCGLGNLGNTCFM 313

Query: 288 NSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------------------------- 321
           NSA+QCL +T     YF +++Y  EIN  NPLGM                          
Sbjct: 314 NSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDTHVAPR 373

Query: 322 ----------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVAD 359
                                 ELLAFLLDGLHEDLNRVK KPY++ KDA+GRPD  VA 
Sbjct: 374 MFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAK 433

Query: 360 EYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTV 419
           E W NH  RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL     R M V +
Sbjct: 434 EAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEVFL 493

Query: 420 FTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLI 479
                          VP    CR    V+ ++ + +  +  ++ E  NH + R       
Sbjct: 494 ---------------VPADPHCRPTQMVVTDVYNHRFHKIFQMDEGLNHIMPR------- 531

Query: 480 SLSTIKDDDHLAAYRVPKL-VKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISR 538
                   D +  Y V    +  A  + L    +E++  A+ T+S    YG PL+ S+ +
Sbjct: 532 --------DDIFVYEVCSTSMDGAECVTLPVYFRERKSRASSTSSGAVLYGQPLLISVPK 583

Query: 539 DDVISSGKIQSTVQRMLSPFLKKE-------SLMHADSF-------------------DP 572
             +      Q    R +S ++K+        S +   ++                   D 
Sbjct: 584 HKLTLQSLYQIVCDR-ISRYMKQPLPDESGGSPLEPGAYNGSRGSCEGEDEEEMEHQEDG 642

Query: 573 SSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIR 632
              ++  + SGE    S      + +   +          LV+        S+  D  + 
Sbjct: 643 KEQLSEAEGSGEDEPGSDPRETTQKSVKGQPCPKSLFTFSLVNSYGTADINSLPTDGKLL 702

Query: 633 IPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLRE 692
             +   SI + V   Q L  + +      + E   +    +K +   ++L  C+E F   
Sbjct: 703 KLNCKASIALCVLIQQDLFVQNSVLCFSQIYEKHVSMLQPQKKKKTTVALRDCIELFTTM 762

Query: 693 EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHD 752
           E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + KL+T V FP+ +
Sbjct: 763 ETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPVSN 822

Query: 753 ---FNLT-KYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHIS 808
               NL+ K +  K S+     +L  L++          TA+ K     +WY FDDS +S
Sbjct: 823 PTSRNLSVKSIEKKESNSIGDQQLAVLSHLLD-------TAYAKNKLNGKWYYFDDSSVS 875

Query: 809 PINEDDVKSAAAYVLFYRR 827
             +ED + + AAYVLFY+R
Sbjct: 876 LASEDQIVTKAAYVLFYQR 894


>gi|308081762|ref|NP_001183969.1| ubiquitin carboxyl-terminal hydrolase 11 [Canis lupus familiaris]
          Length = 770

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 233/655 (35%), Positives = 322/655 (49%), Gaps = 119/655 (18%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV----------- 321
           G+ GL NLGNTCFMNSA+QCL + P+   YF +  Y  E+N+ NPLGM            
Sbjct: 100 GICGLTNLGNTCFMNSALQCLSNVPQLTEYFLKNHYLEELNFCNPLGMKGEIAEAYADLV 159

Query: 322 ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                               ELL+FLLDGLHEDLNRVK K Y++
Sbjct: 160 KQAWSGHHRSIVPHVFKTKVGHFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVE 219

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
             DA GRPD+EVA E W NH  RNDS+IVD   G +KSTLVCP C  VSVTFDPF YLS+
Sbjct: 220 LCDAAGRPDQEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSV 279

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
           PL  +  R M V   + D    P  + + VPK G+  DL   L     +   E + VA++
Sbjct: 280 PLPVSHKRVMEVFFVSMDPRRKPEQHRLVVPKKGKISDLCVALAKHTGMS-PERMMVADV 338

Query: 466 QNHSIQRF--LDDPLISLSTIKDDDHLAAYRVP------KLVKKAVFLQLIHRLQEQEPG 517
            +H   +   L++   SLS+I D D +  Y V       +  ++ V L +   L+E+ P 
Sbjct: 339 FSHRFYKIYQLEE---SLSSILDRDDIFIYEVSGRSAIGENSREDVVLPIY--LRERTPA 393

Query: 518 AAQTTSQWKA--YGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKES------------ 563
                S +    +G PL+ S+ RD  +S   +   +   LS ++ + S            
Sbjct: 394 RDYNNSYYGLMLFGHPLLVSVPRDR-LSWDALYHILLYRLSRYVTRPSSDDEDDGDEKGK 452

Query: 564 -----LMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVT------LPNLP-- 610
                 +  D  D         P G     SS +   E A  S  V       + N P  
Sbjct: 453 EEEGERIDKDEADIEDKDNIPKP-GHVAGASSQDSGPEQAGPSSGVAGGSRAPVDNSPGP 511

Query: 611 --------------LQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNT 656
                         LQ V+ SN   D S   + T   P       + +DW  ++ ++Y  
Sbjct: 512 SHWPQRARRKHLFTLQTVN-SNGTSDRSTFNEDTHAQP------YIAIDWEPEMKKRYYD 564

Query: 657 HF-LENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKK 715
               E  ++    G V KKA   P+ L  C+E F   E L  E+ W+CP CK+ + A+KK
Sbjct: 565 EVEAEGYVKHDCVGYVLKKA---PVRLQECIELFTTVETLEKENPWFCPTCKQHQLATKK 621

Query: 716 LDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVAN-KNSSRRQL--YEL 772
           LDLW LPE L+IHLKRFSY++  + KL+T V FPI D + +++V   +N S  +L  Y+L
Sbjct: 622 LDLWMLPETLIIHLKRFSYTKFSREKLDTLVEFPIRDLDFSEFVIKPQNESAPELYKYDL 681

Query: 773 YALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            A++NHYGG+  GHYT      D  +W+ FDD+ +SP+ E+ ++S AAYVLFY+R
Sbjct: 682 IAVSNHYGGLRDGHYTTFACNKDSGQWHYFDDNSVSPVTENQIESKAAYVLFYQR 736


>gi|114205510|gb|AAI05614.1| Usp11 protein [Rattus norvegicus]
          Length = 728

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 228/649 (35%), Positives = 320/649 (49%), Gaps = 110/649 (16%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV----------- 321
           G+ GL NLGNTCFMNSA+QCL + P+   YF  + Y  E+N++NPLGM            
Sbjct: 62  GICGLTNLGNTCFMNSALQCLSNVPQLTEYFLNNRYLEELNFRNPLGMKGELAEAYADLV 121

Query: 322 ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                               ELL+FLLDGLHEDLNRVK K Y++
Sbjct: 122 KQTWSGYHRSIVPNVFKNKVGHFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVE 181

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
             +  GRPD EVA E W NH  RNDS+IVD   G +KSTLVCP C  VSVTFDPF YLS+
Sbjct: 182 LCNGAGRPDLEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSV 241

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
           PL   + R + V     D    P  + V VPK G   DL   L    S+   +++ VA++
Sbjct: 242 PLPVCSRRVLEVFFVPMDPRRKPEQHRVVVPKKGNISDLCVALSTHTSVA-PDKMIVADV 300

Query: 466 QNHSIQRF--LDDPLISLSTIKDDDHLAAYRVPKLVKKAVF----LQLIHRLQEQEPGAA 519
            +H   +   L+DP   LS I D D +  Y V   ++        + +   L+E+ P   
Sbjct: 301 FSHRFYKLYQLEDP---LSGILDRDDIFVYEVTGRIEPVEGSRDDIVVPVYLRERTPSRD 357

Query: 520 QTTSQWK--AYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKES-------------L 564
              S +    +G PL+ S+ RD     G + + +   LS ++ K +              
Sbjct: 358 YNNSYYGLILFGHPLLVSVPRDRFSWEG-LYNILMYRLSRYVTKPTSDDDDGDEKGDENE 416

Query: 565 MHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVT--LPNL------------- 609
                 D SS     + SG   ++ +    +E A +S  VT   P+L             
Sbjct: 417 DEDVEDDSSSEEEKEEMSGPTDNDGTQESEQEQAGTSSGVTGRCPSLLDNSLHTSQWPPR 476

Query: 610 -------PLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENL 662
                   LQ V+ +          D+T     + T   + +DW  ++  +Y   + E  
Sbjct: 477 RRRKQLFTLQTVNSNGT-------SDRTTSPEEAQTQPYIAMDWEPEMKRRY---YDEVE 526

Query: 663 LEVF-KNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRL 721
            E + K+  V    +  P+ L  C++ F   E L  E+ WYC  CK+ + A+KKLDLW L
Sbjct: 527 AEGYVKHDCVGYMLKKNPVQLKECIKLFTTVETLEKENPWYCSSCKQHQLATKKLDLWML 586

Query: 722 PEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVAN-KNSSRRQL--YELYALTNH 778
           PEVL+IHLKRFS+S+  + KL+T V FPI D + +++V   KN S   L  Y+L A++NH
Sbjct: 587 PEVLIIHLKRFSFSKFSREKLDTLVQFPIRDLDFSEFVIKPKNESAPDLYKYDLIAVSNH 646

Query: 779 YGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           YGGM  GHYT      D  +W+ FDD+ +SP+NE+ ++S AAYVLFY+R
Sbjct: 647 YGGMRDGHYTTFACNKDSGQWHYFDDNSVSPVNENQIESKAAYVLFYQR 695


>gi|328872047|gb|EGG20417.1| peptidase C19 family protein [Dictyostelium fasciculatum]
          Length = 1393

 Score =  333 bits (853), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 243/818 (29%), Positives = 376/818 (45%), Gaps = 127/818 (15%)

Query: 67   EGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLL-VMPRGEC 125
            E   + ++P +VWN     YG  P ++RKV  + +S +      YP+ L++     +   
Sbjct: 499  ENTHFAVVPAQVWNYFLKSYGCSPIVSRKVAKNFMSSS--IDYNYPVPLKVFKSSQQSNV 556

Query: 126  STIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQD 185
              I  SK ET+ +   R C +  +  + + +WDYY    H+  N++      +N ++   
Sbjct: 557  LDIFASKNETVNKFKERVCKLLDVEPQNVRVWDYYN---HSKYNELKNPEYISNCRL--- 610

Query: 186  ILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEI 245
                    + G N         F E+ A               G W   K +S       
Sbjct: 611  --------IEGQNVL-------FDERLAD--------------GSWPQEKSSSSYSGYSS 641

Query: 246  STSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF- 304
              +     AR                  G+ GL NLGNTCFMNS++QCL +     RY  
Sbjct: 642  RYNQRNGPARP-----------------GIAGLDNLGNTCFMNSSLQCLSNAIPLTRYLL 684

Query: 305  REDYRREINWQNPLGM-------------------------------------------- 320
             E +  ++N  NPLG                                             
Sbjct: 685  NEKHLEDLNVDNPLGCNGDLAKEYANLIKQIWKGDMTSVGPRNFKTAIERFAPQFMGYQQ 744

Query: 321  ---VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVC 377
                ELLAFLLDGLHED+N+VK KP+ + KD DGR DE +A+E W  H ARN SIIVD  
Sbjct: 745  HDSQELLAFLLDGLHEDMNQVKKKPFFEGKDYDGRADEIIANEQWEMHRARNKSIIVDWF 804

Query: 378  QGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPK 437
            Q Q KS L+CP C  +S+TFDPFMYLSLPL     + M+V     +G+ALP+ +++ + K
Sbjct: 805  QAQLKSKLICPECENISITFDPFMYLSLPLPVNIRKIMSVVYVPYNGNALPTQHSIELNK 864

Query: 438  HGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPK 497
                ++L++ L    ++     L      N+ I + L  P  +L +I + D +  Y V  
Sbjct: 865  SSTVQELLEKLAAEPNVAPISHLFATSQSNNQINKHL-KPTGTLDSIHNRDPIVVY-VNH 922

Query: 498  LVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYG-TPLVSSISRDDVISSGKIQSTVQRMLS 556
             + + ++ Q  + L++      + T +   +   P V S+   ++ S   +   +Q  L 
Sbjct: 923  RINRLIYEQ--YELKDPANHTIKVTMKTGYHSHFPFVLSVPFAELTSVEDLYFHIQERLG 980

Query: 557  PFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDE 616
              LK++  +  + FD +      +PS E   NS S     + +          P      
Sbjct: 981  GLLKEQDRI-KEIFDSNQKPIENEPSEEEEDNSYSGYRPYNYNRINHQKPARDP------ 1033

Query: 617  SNVCFDLSVEGDKTIRIPSSSTSI------VVYVDWSQKLLEKYNTHFLENLLEVFKNGP 670
                F ++V+   ++  P    +       ++ + W  +  ++   HF    LE  +   
Sbjct: 1034 -RFIFQMTVDNKDSMMAPPKKFAFDPINFDMITLHWEGQTFDR---HFDAGQLENSQYNT 1089

Query: 671  VTKKARTEP-LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHL 729
              +   +E  + L TC++ F   E L  ED WYC +CK  +QA+KK D+W  P +LVIHL
Sbjct: 1090 FHRDIASEKEIELKTCIDLFTSTEKLGAEDPWYCSKCKVHQQATKKFDIWSAPPILVIHL 1149

Query: 730  KRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTA 789
            KRFSY ++ + KL+T V FPI D +L+ +V + + S   +Y+L+A++NHYG MG GHYTA
Sbjct: 1150 KRFSYKKAWREKLDTLVRFPIKDLDLSSHVLSPSDS-PPVYDLFAVSNHYGSMGGGHYTA 1208

Query: 790  HIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            +     EN+W  FDDSH   ++  +V + AAYVLFYRR
Sbjct: 1209 YALNELENQWVKFDDSHTQNVDASNVITDAAYVLFYRR 1246


>gi|242068361|ref|XP_002449457.1| hypothetical protein SORBIDRAFT_05g013830 [Sorghum bicolor]
 gi|241935300|gb|EES08445.1| hypothetical protein SORBIDRAFT_05g013830 [Sorghum bicolor]
          Length = 276

 Score =  330 bits (846), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 152/217 (70%), Positives = 181/217 (83%), Gaps = 3/217 (1%)

Query: 611 LQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGP 670
           LQL+D+SN   + S   +  IR+P SS + V +++W ++ L+K +TH LE L EVF  GP
Sbjct: 36  LQLIDDSNTVIEKS---NDAIRVPQSSLATVFFINWLKEDLKKIDTHHLEYLPEVFMYGP 92

Query: 671 VTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLK 730
             K+ R E LSLY CL+AFLREEPLVPEDMWYCP+CKE+RQASKKLDLWRLPEVLVIHLK
Sbjct: 93  PAKRTRGEALSLYACLDAFLREEPLVPEDMWYCPRCKEQRQASKKLDLWRLPEVLVIHLK 152

Query: 731 RFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAH 790
           RFS+SRS K KLETFVNFPIHD +LT Y+ANK SS RQ+YELYA++NHYG M SGHYTAH
Sbjct: 153 RFSFSRSTKQKLETFVNFPIHDLDLTNYIANKKSSERQIYELYAVSNHYGNMASGHYTAH 212

Query: 791 IKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           IKL+DENRWYNFDDSH++ I+ED+VK+AAAYVLFYRR
Sbjct: 213 IKLVDENRWYNFDDSHVASIDEDEVKTAAAYVLFYRR 249


>gi|291000604|ref|XP_002682869.1| ubiquitin-specific processing protease [Naegleria gruberi]
 gi|284096497|gb|EFC50125.1| ubiquitin-specific processing protease [Naegleria gruberi]
          Length = 1073

 Score =  330 bits (845), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 271/937 (28%), Positives = 423/937 (45%), Gaps = 167/937 (17%)

Query: 1    WWQHWIDYVNQDQPN-NTGDGSSLLEHFNSAGSSASKRPSGIDNSDLV------NDATAE 53
            W++ W +YVN   PN N G      +         S  P  IDNSD++      N  + +
Sbjct: 180  WFKIWKEYVNY--PNENVGK-----KKHKETSHKKSPAPGPIDNSDIIQEVLIYNGFSLK 232

Query: 54   DPGAGPEIVDTLLEG--------------RDYILLPQEVWNQLHSWYG---GGPTLARKV 96
             P   PE  +   +G              +D+  + +E ++ L  WYG       + R+V
Sbjct: 233  HPLV-PEFTNFTRDGSVLFTTVLKRDITRQDFEFVSEESYDLLAHWYGEINNSQKIVRRV 291

Query: 97   ISSGLSQTELA-VEVYPLRLQL-LVMPRGEC-----STIRISKKETIGELHRRACSIF-- 147
            I  GL   ++  VE++P  L + +V  +G       +TI++SKK    +L    C +F  
Sbjct: 292  IVDGLENNQMRRVEIHPYILNIYMVNEKGTIMKDTKTTIQVSKKLATKDLKMLGCVLFES 351

Query: 148  -----YLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSS 202
                    L+   +W        A+ +   +TL+ A I   Q I+ E     NG      
Sbjct: 352  TIIQKTSTLKNCRMWRKEDSSASAIADSESQTLEKALIFDGQSIVFEF--KQNGGEFPLE 409

Query: 203  IQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLG 262
            I    F +K+      E + +S          K   R+  SEI  S         D +  
Sbjct: 410  I----FKKKQ------ESNDASDEEEDEDDEEK---RSKLSEIWDSI-------KDYSFS 449

Query: 263  SSGVTT----RGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNP 317
            + G+ T    +    GL GL NLGNTCFMNSAIQCL +T     YF    Y + IN  NP
Sbjct: 450  TFGIATPASGKSKKRGLCGLRNLGNTCFMNSAIQCLSNTVPLKNYFISGLYAKHINTSNP 509

Query: 318  LGMV----------------------------------------------ELLAFLLDGL 331
            LG                                                EL ++LLDGL
Sbjct: 510  LGTKGKLANNFASLIKEMWSGGANFTPTNFKYAISQFAPQFSGYNQHDSQELTSYLLDGL 569

Query: 332  HEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCN 391
            HEDLN+V +KPYI++KD DGRPDE +A E W  H+ RNDS+IVD+ QGQ KSTL+C VCN
Sbjct: 570  HEDLNKVINKPYIEAKDYDGRPDEVIAKESWEQHLKRNDSVIVDLFQGQLKSTLICNVCN 629

Query: 392  KVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNI 451
            K+SV FDPFMYLS+P+  +    + V +  ++     + YTV +PK    + L      +
Sbjct: 630  KISVKFDPFMYLSVPVGKSMPHRLDVILLNTENGGRATKYTVELPKQSTVQVLATQFAKV 689

Query: 452  CSLKQSEELKVAEIQNHSIQR---FLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLI 508
             S +  ++L+   +   SI R   F D   I     K    +    VP       +  LI
Sbjct: 690  -SGRDPQKLQFFAMAGFSIGRQFSFNDSVKIIDPNAKSTPKVLCADVPDDYSPEKY--LI 746

Query: 509  HRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHAD 568
              ++++ P       ++K+ G P V  + ++  IS+      +   L    KK       
Sbjct: 747  IPIRQRYPSEE---GKFKSVGIPFVLFVKKE--ISTKDFYDILWSHLQRVAKKS------ 795

Query: 569  SFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGD 628
               P    T + P+ E          +E   + +   L        D +N+ F  +V  D
Sbjct: 796  ---PEDPETNLQPTKED--------GQEYPLAERIEILRQTLFPAFDPANIPFKFTV-ID 843

Query: 629  KTIRIPSSSTSIVVYVDWSQKLLEKY-----NTHFLENLLEV------------FKNGPV 671
            K++ + + +  I +  D    ++++Y     N +F  +  +V                 +
Sbjct: 844  KSVEVVNDTCGIPILYDDRDDMVKEYLQQEDNYYFSVDWFDVKMLKTKETVTVHVAEQNI 903

Query: 672  TKKA-RTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLK 730
            T +A R++ +SL  CL+     E L   D WYCP CK+   A K+  +W  PE+L+IHLK
Sbjct: 904  TNEAPRSQNISLDDCLKLNSEMEQLGERDQWYCPDCKKHVCAFKQCCVWSSPEILIIHLK 963

Query: 731  RFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAH 790
            RF ++R  + K+   V++PI++ +L+ Y+  K      LY+L+A++ H GG+  GHY ++
Sbjct: 964  RFGFNRFGREKVNALVDYPIYNLDLSDYMVRK-PEDHMLYDLFAISCHTGGLYGGHYYSY 1022

Query: 791  IKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             K  +++RWY F+DS +SP+ E ++K++ AY+LFY+R
Sbjct: 1023 AKNCEDSRWYCFNDSSVSPLTEKELKTSNAYMLFYQR 1059


>gi|148692493|gb|EDL24440.1| ubiquitin specific peptidase 15, isoform CRA_b [Mus musculus]
          Length = 663

 Score =  329 bits (843), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 221/618 (35%), Positives = 301/618 (48%), Gaps = 118/618 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM------------ 320
           GL GL NLGNTCFMNSAIQCL +TP    YF  D Y+ E+N+ NPLGM            
Sbjct: 36  GLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELI 95

Query: 321 -----------------------------------VELLAFLLDGLHEDLNRVKHKPYIK 345
                                               ELLAFLLDGLHEDLNR++ KPYI+
Sbjct: 96  KQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQ 155

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
            KDADGRPD+ VA+E W NH+ RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+L
Sbjct: 156 LKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTL 215

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
           PL     R++ V +   D  A P  Y V VPK G   DL   L  +  +  ++++ V +I
Sbjct: 216 PLPMKKERSLEVYLVRMDPLAKPMQYKVIVPKIGNILDLCTALSALSGVP-ADKMIVTDI 274

Query: 466 QNHSIQRFL--DDPLISLSTIKDDDHLAAYRVPKLVKKA-----VFLQLIHRLQEQEPGA 518
            NH   R    D+   +LS+I + D +  + +   + +A     V + +  R + +    
Sbjct: 275 YNHRFHRIFAVDE---NLSSIMERDDIYVFEIN--INRAEDTEHVVIPVCLREKFRHSSY 329

Query: 519 AQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLK------------------ 560
              T     +G P + +I R++  +  K+ + +   +  ++K                  
Sbjct: 330 THHTGS-SLFGQPFLMAIPRNN--TEDKLYNLLLLRMCRYVKMSTETEETDGHLRCCEDQ 386

Query: 561 --------------KESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTL 606
                           S M  D  D  S      PS   +S S  ++  ++ S +   T 
Sbjct: 387 NINGNGPNGLHEEGSPSEMETDEPDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTE 446

Query: 607 PNLPLQLVDESNVCFDLSVE--GDKTIRIPSSSTSIVVY--------------VDWSQKL 650
                QL       F       G+  I      TS + +              +DW   L
Sbjct: 447 ETCKGQLTGHKKRLFTFQFNNLGNNDINYIKDDTSHIRFDDRQLRLDERSFLALDWDPDL 506

Query: 651 LEKYNTHFLENLLEVF-KNGPVTKKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKE 708
            ++Y   F EN  E F K+  V  K    P   L  C+E F  +E L  ED WYCP CKE
Sbjct: 507 KKRY---FDENAAEDFEKHESVEYKPPKRPFVKLKDCIELFTTKEKLGAEDPWYCPNCKE 563

Query: 709 RRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQ 768
            +QA+KKLDLW LP VLV+HLKRFSYSR M+ KL+T V+FPI D ++++++ N N+   +
Sbjct: 564 HQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPISDLDMSEFLINPNAGPCR 623

Query: 769 LYELYALTNHYGGMGSGH 786
            Y L A++NHYGGMG GH
Sbjct: 624 -YNLIAVSNHYGGMGGGH 640


>gi|149066661|gb|EDM16534.1| ubiquitin specific peptidase 15, isoform CRA_c [Rattus norvegicus]
          Length = 654

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 220/622 (35%), Positives = 299/622 (48%), Gaps = 110/622 (17%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM------------ 320
           GL GL NLGNTCFMNSAIQCL +TP    YF  D Y+ E+N+ NPLGM            
Sbjct: 37  GLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELI 96

Query: 321 -----------------------------------VELLAFLLDGLHEDLNRVKHKPYIK 345
                                               ELLAFLLDGLHEDLNR++ KPYI+
Sbjct: 97  KQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQ 156

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
            KDADGRPD+ VA+E W NH+ RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+L
Sbjct: 157 LKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTL 216

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
           PL     R++ V +   D  A P  Y V VPK G   DL   L  +  +  ++++ V +I
Sbjct: 217 PLPMKKERSLEVYLVRMDPLAKPMQYKVIVPKIGNILDLCTALSALSGVP-ADKMIVTDI 275

Query: 466 QNHSIQR-FLDDPLISLSTIKDDDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTS 523
            NH   R F  D  +S    +DD ++    + +    + V + +  R + +       T 
Sbjct: 276 YNHRFHRIFAMDENLSSIMERDDIYVFEININRTEDTEHVVIPVCLREKFRHSSYTHHTG 335

Query: 524 QWKAYGTPLVSSISRDD------------VISSGKIQSTVQRMLSPFLKKE--------- 562
               +G P + ++ R++            +    K+ +  +    P    E         
Sbjct: 336 S-SLFGQPFLMAVPRNNTEDKLYNLLLLRMCRYVKMSTETEETDGPLRCCEDQNINGNGP 394

Query: 563 ---------SLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQL 613
                    S M  D  D  S      PS   +S S  ++  ++ S +   T      QL
Sbjct: 395 NGIHEEGSPSEMETDEPDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEETCKGQL 454

Query: 614 VDESNVCFDLSVEG-------------------DKTIRIPSSSTSIVVYVDWSQKLLEKY 654
                  F                         D+ +R+   S    + +DW   L ++Y
Sbjct: 455 TGHKKRLFTFQFNNLGNTDINYIKDDTRHIRFDDRQLRLDERS---FLALDWDPDLKKRY 511

Query: 655 NTHFLENLLEVF-KNGPVTKKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQA 712
              F EN  E F K+  V  K    P   L  C+E F  +E L  ED WYCP CKE +QA
Sbjct: 512 ---FDENAAEDFEKHESVEYKPPKRPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQA 568

Query: 713 SKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYEL 772
           +KKLDLW LP VLV+HLKRFSYSR M+ KL+T V+FPI D ++++++ N N+   + Y L
Sbjct: 569 TKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPISDLDMSEFLINPNAGPCR-YNL 627

Query: 773 YALTNHYGGMGSGHYTAHIKLL 794
            A++NHYGGMG GH    + +L
Sbjct: 628 IAVSNHYGGMGGGHCKLTLYIL 649


>gi|26327595|dbj|BAC27541.1| unnamed protein product [Mus musculus]
          Length = 699

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 227/649 (34%), Positives = 316/649 (48%), Gaps = 110/649 (16%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV----------- 321
           G+ GL NLGNTCFMNSA QCL + P+   YF  + Y  E+N++NPLGM            
Sbjct: 33  GICGLTNLGNTCFMNSAQQCLSNVPQLTEYFLNNRYLEELNFRNPLGMKGELAEAYADLV 92

Query: 322 ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                               ELL+FLLDGLHEDLNRVK K Y++
Sbjct: 93  KQTWSGYHRSIVPNVFKNKVGHFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVE 152

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
             +  GRPD EVA E W NH  RNDS+IVD   G +KSTLVCP C  VSVTFDPF YLS+
Sbjct: 153 LCNGAGRPDLEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSV 212

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
           PL   + R + V     D    P  + V VPK G   DL   L    S+   +++ VA++
Sbjct: 213 PLPVCSRRVLEVFFVPMDPRRKPEQHRVVVPKKGNISDLCVALSTHTSVA-PDKMIVADV 271

Query: 466 QNHSIQRF--LDDPLISLSTIKDDDHLAAYRVPKLVKKAVF----LQLIHRLQEQEPGAA 519
            +H   +   L+DPL   S I D D +  Y V   ++        + +   L+E+ P   
Sbjct: 272 FSHRFYKLYQLEDPL---SGILDRDDIFVYEVTGRIEPVEGSRDDIVVPVYLRERTPSRD 328

Query: 520 QTTSQWKA--YGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKES-------------L 564
              S +    +G PL+ S+ RD     G + + +   LS ++ K +              
Sbjct: 329 YNNSYYGLILFGHPLLVSVPRDRFSWEG-LYNILMYRLSRYVTKPTSDEDDGDEKVDEDE 387

Query: 565 MHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVT--LPNL------------- 609
                 D SS     + S    ++ +    +E A +S  VT   P+L             
Sbjct: 388 DEDVEDDSSSEEEKEEMSAPTVNDGTREAEQEQAGTSSGVTERCPSLLDNSLRASQWPPR 447

Query: 610 -------PLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENL 662
                   LQ V+ +          D+T       T   + +DW   +  +Y   + E  
Sbjct: 448 RRRKQLFTLQTVNSNGT-------SDRTTSPEEMQTQPYIAMDWEPDMKRRY---YDEVE 497

Query: 663 LEVF-KNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRL 721
            E + K+  V    +  P+ L  C++ F   E L  E+ WYC  CK+ + A+KKLDLW L
Sbjct: 498 AEGYVKHDCVGYMLKKSPVQLKECIKLFTTVETLEKENPWYCSSCKQHQLATKKLDLWML 557

Query: 722 PEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVAN-KNSSRRQL--YELYALTNH 778
           PEVL+IHLKRFS+S+  + KL+T V FPI D + +++V   KN S   L  Y+L A++NH
Sbjct: 558 PEVLIIHLKRFSFSKISREKLDTLVQFPIRDLDFSEFVIKPKNESSPDLYKYDLIAVSNH 617

Query: 779 YGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           YGGM  GHYT      D  +W+ FDD+ +SP+NE+ ++S AAYVLFY+R
Sbjct: 618 YGGMRDGHYTTFACNKDSGQWHYFDDNSVSPVNENQIESKAAYVLFYQR 666


>gi|13529494|gb|AAH05470.1| Ubiquitin specific peptidase 11 [Mus musculus]
          Length = 699

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 227/649 (34%), Positives = 315/649 (48%), Gaps = 110/649 (16%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV----------- 321
           G+ GL NLGNTCFMNSA+QCL + P+   YF  + Y  E+N++NPLGM            
Sbjct: 33  GICGLTNLGNTCFMNSALQCLSNVPQLTEYFLNNRYLEELNFRNPLGMKGELAEAYADLV 92

Query: 322 ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                               ELL+FLLDGLHEDLNRVK K Y++
Sbjct: 93  KQTWSGYHRSIVPNVFKNKVGHFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVE 152

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
             +  GRPD EVA E W NH  RNDS+IVD   G +KSTLVCP C  VSVTFDPF YLS+
Sbjct: 153 LCNGAGRPDLEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSV 212

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
           PL   + R + V     D    P  + V VPK G   DL   L    S+   +++ VA++
Sbjct: 213 PLPVCSRRVLEVFFVPMDPRRKPEQHRVVVPKKGNISDLCVALSTHTSVA-PDKMIVADV 271

Query: 466 QNHSIQRF--LDDPLISLSTIKDDDHLAAYRVPKLVKKAVF----LQLIHRLQEQEPGAA 519
            +H   +   L+DPL   S I D D +  Y V   ++        + +   L+E+ P   
Sbjct: 272 FSHRFYKLYQLEDPL---SGILDRDDIFVYEVTGRIEPVEGSRDDIVVPVYLRERTPSRD 328

Query: 520 QTTSQWKA--YGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKES-------------L 564
              S +    +G PL+ S+ RD     G     + R LS ++ K +              
Sbjct: 329 YNNSYYGLILFGHPLLVSVPRDRFSWEGLYNILMYR-LSRYVTKPTSDEDDGDEKVDEDE 387

Query: 565 MHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVT--LPNL------------- 609
                 D SS     + S    ++ +    +E A +S  VT   P+L             
Sbjct: 388 DEDVEDDSSSEEEKEEMSAPTVNDGTREAEQEQAGTSSGVTERCPSLLDNSLRASQWPPR 447

Query: 610 -------PLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENL 662
                   LQ V+ +          D+T       T   + +DW   +  +Y   + E  
Sbjct: 448 RRRKQLFTLQTVNSNGT-------SDRTTSPEEMQTQPYIAMDWEPDMKRRY---YDEVE 497

Query: 663 LEVF-KNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRL 721
            E + K+  V    +  P+ L  C++ F   E L  E+ WYC  CK+ + A+KKLDLW L
Sbjct: 498 AEGYVKHDCVGYMLKKSPVQLKECIKLFTTVETLEKENPWYCSSCKQHQLATKKLDLWML 557

Query: 722 PEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVAN-KNSSRRQL--YELYALTNH 778
           PEVL+IHLKRFS+S+  + KL+T V FPI D + +++V   KN S   L  Y+L A++NH
Sbjct: 558 PEVLIIHLKRFSFSKISREKLDTLVQFPIRDLDFSEFVIKPKNESSPDLYKYDLIAVSNH 617

Query: 779 YGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           YGGM  GHYT      D  +W+  DD+ +SP+NE+ ++S AAYVLFY+R
Sbjct: 618 YGGMRDGHYTTFACNKDSGQWHYLDDNSVSPVNENQIESKAAYVLFYQR 666


>gi|108862978|gb|ABA99902.2| Ubiquitin carboxyl-terminal hydrolase family protein, expressed
           [Oryza sativa Japonica Group]
          Length = 801

 Score =  323 bits (829), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 215/548 (39%), Positives = 282/548 (51%), Gaps = 112/548 (20%)

Query: 69  RDYILLPQEVWNQLHSWY-GGGPTLARKVISSGLSQTELAVEVYPLRLQLLVMPRGECST 127
           R Y L+  +++++  +W+   G    +K     LS  E +V +YP+ L++ V       T
Sbjct: 102 RTYALVAADLFSKARAWHIDSGKNAGKK----SLSIEEGSVNIYPIMLRVSVTRDTNALT 157

Query: 128 IRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDIL 187
           ++ISKK+   E  +RA  I   + E + IWD+ G     LMN+ +R   D     DQ++ 
Sbjct: 158 VKISKKDNSAENFKRANKILTSDSEPVHIWDFSGRTTFILMNEWNRMPQDTR-SSDQEMP 216

Query: 188 VEV------LDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNH 241
           +E+          NGTN K          K   ++ +  S S+ SI G            
Sbjct: 217 LEIHFYDLSEPTANGTNGK----------KDELALTMSRSMSNGSIMG------------ 254

Query: 242 SSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVH----- 296
                              L SSG +++    GL GL NLGNTCFMNSA+QCL H     
Sbjct: 255 -----------------MDLDSSG-SSKQVGTGLIGLDNLGNTCFMNSAVQCLAHTSKLG 296

Query: 297 ------------------TPEFARYFREDYRR---EINWQNPLGMVELLAFLLDGLHEDL 335
                             TP   R F+    R   + +  N     ELLAFLLDGLHEDL
Sbjct: 297 ELAYSFGDLLRKLWALDRTPVAPRQFKGKLARFAPQFSGFNQHDSQELLAFLLDGLHEDL 356

Query: 336 NRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQ----------------- 378
           NRVK KPY ++KD+DGRPDEEVADEYW NHIARNDSIIVD+CQ                 
Sbjct: 357 NRVKCKPYSEAKDSDGRPDEEVADEYWGNHIARNDSIIVDICQRKGSVGQIKFPSLAGVV 416

Query: 379 ------------GQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSA 426
                       GQYKSTLVCP C KVSVTFDPFMYLSLPL +TT RTMT+TVF +DG+ 
Sbjct: 417 VALLFLLPKWTHGQYKSTLVCPDCRKVSVTFDPFMYLSLPLPSTTMRTMTITVFNTDGTT 476

Query: 427 LPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKD 486
            PS YTV+VPK G  + LI  L   CSLK  E L VAE+ N ++ R+L++P   +S I+D
Sbjct: 477 GPSPYTVSVPKSGDTKTLIDALSIACSLKGDERLLVAEVYNSALIRYLEEPSEVISLIRD 536

Query: 487 DDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQ-WKAYGTPLVSSISRDDVISSG 545
            D L AY++PK  + A    ++ R Q  E        + WK++GTPLVSS+   D I+  
Sbjct: 537 GDRLVAYKLPKDSEDAPI--VVFRNQRMESTLTSFGRKSWKSFGTPLVSSLP--DTINGS 592

Query: 546 KIQSTVQR 553
            I    Q+
Sbjct: 593 TIFELYQK 600



 Score =  239 bits (610), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 105/177 (59%), Positives = 137/177 (77%), Gaps = 1/177 (0%)

Query: 651 LEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERR 710
           LE+YN   L+NL E++K    +++ + E  SLY CLEAF++EEPL PEDMWYCP CKE R
Sbjct: 604 LEQYNFSSLDNLPEIYKAVLFSRRPQ-ETCSLYACLEAFIKEEPLGPEDMWYCPGCKEHR 662

Query: 711 QASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLY 770
           QASKKLDLWRLPE+L+IHLKRFSYSR  K+KLET V+FP+HD +L+KY+ ++       Y
Sbjct: 663 QASKKLDLWRLPEILIIHLKRFSYSRYTKNKLETCVDFPVHDLDLSKYIGSRGQQISNHY 722

Query: 771 ELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            LYA++NHYG MG GHYTA++    +  WY+FDD H+ PI+E+ +K++AAYVLFYRR
Sbjct: 723 RLYAISNHYGSMGGGHYTAYVYHEGKKGWYDFDDRHVGPISEESIKTSAAYVLFYRR 779


>gi|47169480|tpe|CAE48377.1| TPA: ubiquitin specific protease 11 [Rattus norvegicus]
          Length = 700

 Score =  323 bits (829), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 226/650 (34%), Positives = 319/650 (49%), Gaps = 111/650 (17%)

Query: 274 GLTGLLNLGNTCFMNSAIQ-CLVHTPEFARYFRED-YRREINWQNPLGMV---------- 321
           G+ GL NLGNTCFMNSA+Q CL + P+   YF  + Y  E+N++NPLGM           
Sbjct: 33  GICGLTNLGNTCFMNSALQQCLSNVPQLTEYFLNNRYLEELNFRNPLGMKGELAEAYADL 92

Query: 322 -------------------------------------ELLAFLLDGLHEDLNRVKHKPYI 344
                                                ELL+FLLDGLHEDLNRVK K Y+
Sbjct: 93  VKQTWSGYHRSIVPNVFKNKVGHFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYV 152

Query: 345 KSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLS 404
           +  +  GRPD EVA E W NH  RNDS+IVD   G +KSTLVCP C  VSVTFDPF YLS
Sbjct: 153 ELCNGAGRPDLEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLS 212

Query: 405 LPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAE 464
           +PL   + R + V     D    P  + V VPK G   DL   L    S+   +++ VA+
Sbjct: 213 VPLPVCSRRVLEVFFVPMDPRRKPEQHRVVVPKKGNISDLCVALSTHTSVA-PDKMIVAD 271

Query: 465 IQNHSIQRF--LDDPLISLSTIKDDDHLAAYRVPKLVKKAVF----LQLIHRLQEQEPGA 518
           + +H   +   L+DP   LS I D D +  Y V   ++        + +   L+E+ P  
Sbjct: 272 VFSHRFYKLYQLEDP---LSGILDRDDIFVYEVTGRIEPVEGSRDDIVVPVYLRERTPSR 328

Query: 519 AQTTSQWK--AYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKES------------- 563
               S +    +G PL+ S+ RD     G + + +   LS ++ K +             
Sbjct: 329 DYNNSYYGLILFGHPLLVSVPRDRFSWEG-LYNILMYRLSRYVTKPTSDDDDGDEKGDEN 387

Query: 564 LMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVT--LPNL------------ 609
                  D SS     + SG   ++ +    +E A +S  VT   P+L            
Sbjct: 388 EDEDVEDDSSSEEEKEEMSGPTDNDGTQESEQEQAGTSSGVTGRCPSLLDNSLHTSQWPP 447

Query: 610 --------PLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLEN 661
                    LQ V+ +          D+T     + +   + +DW  ++  +Y   + E 
Sbjct: 448 RRRRKQLFTLQTVNSNGT-------SDRTTSPEEAQSQPYIAMDWEPEMKRRY---YDEV 497

Query: 662 LLEVF-KNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWR 720
             E + K+  V    +  P+ L  C++ F   E L  E+ WYC  CK+ + A+KKLDLW 
Sbjct: 498 EAEGYVKHDCVGYMLKKNPVQLKECIKLFTTVETLEKENPWYCSSCKQHQLATKKLDLWM 557

Query: 721 LPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVAN-KNSSRRQL--YELYALTN 777
           LPEVL+IHLKRFS+S+  + KL+T V FPI D + +++V   KN S   L  Y+L A++N
Sbjct: 558 LPEVLIIHLKRFSFSKFSREKLDTLVQFPIRDLDFSEFVIKPKNESAPDLYKYDLIAVSN 617

Query: 778 HYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           HYGGM  GH T      D  +W+ FDD+ +SP+NE+ ++S AAYVLFY+R
Sbjct: 618 HYGGMRDGHCTTFACNKDSGQWHYFDDNSVSPVNENQIESKAAYVLFYQR 667


>gi|414883588|tpg|DAA59602.1| TPA: hypothetical protein ZEAMMB73_544083 [Zea mays]
          Length = 449

 Score =  322 bits (826), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 184/453 (40%), Positives = 266/453 (58%), Gaps = 31/453 (6%)

Query: 401 MYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEEL 460
           MYLSLP+ +T  R MTVTVF++DGS  P +Y V+VPK G   DL+Q L  +C L   E L
Sbjct: 1   MYLSLPVPSTAKRVMTVTVFSTDGSREPCSYDVSVPKFGTLSDLVQALSIVCLLGDDEIL 60

Query: 461 KVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQ 520
            V E+ N+ I R+L++P  S+S ++D D LAAYR+PK  +K+  +   H+   Q      
Sbjct: 61  LVTEVYNNCIIRYLEEPSDSVSLLRDGDKLAAYRLPKRHEKSPLVVFTHQHFVQHSSDGN 120

Query: 521 TTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPF-LKKESLMHADSFDPSSMVTTV 579
            T Q + +  PL++++  +  IS   +Q    ++LSPF L   +    D  + +S   +V
Sbjct: 121 LTPQMREFEAPLLAALPEE--ISGLSLQDIYLKLLSPFQLSNGASSLNDCMESNS--DSV 176

Query: 580 DPSGEAHSNSSSNIAKEDA-----SSSKAVTLPNLPLQLVD-------ESNVCFDLSVEG 627
           D   ++ S +  N   ED       S+    +   P  L D       E+++ F+  ++ 
Sbjct: 177 DTPSDSGSINFQNSQLEDGPESNHCSASECEVTKGPDDLYDGVSGSNKEAHMDFEFYLKS 236

Query: 628 DKT-------------IRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKK 674
           ++              + + ++ + + V V W Q    KY T  L NL E+ K   +  K
Sbjct: 237 ERGEGQQQKIEINELHLLLETAPSRLHVNVHWLQNASRKYATSMLNNLPEIHK-LELIPK 295

Query: 675 ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
              + ++L+ CLEAFL+EEPL PEDMWYCP+CK+ +QA KKLDLWRLPEVLVIHLKRFSY
Sbjct: 296 GTEDSVALHGCLEAFLKEEPLGPEDMWYCPRCKKHQQAMKKLDLWRLPEVLVIHLKRFSY 355

Query: 735 SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
           ++  ++KLETFV+FP  D +L+ YVA+K+      Y LYA++NHYG MG GHYTA I   
Sbjct: 356 TQFTRNKLETFVDFPTVDLDLSSYVADKSEQPSSHYRLYAVSNHYGNMGGGHYTASIYHE 415

Query: 795 DENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           +   WY FDD  ++P++ED +K+ AAYVLFYRR
Sbjct: 416 EGKGWYKFDDDCVTPMSEDSIKTPAAYVLFYRR 448


>gi|441631760|ref|XP_003252781.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15 isoform 2
           [Nomascus leucogenys]
          Length = 648

 Score =  317 bits (812), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 213/585 (36%), Positives = 301/585 (51%), Gaps = 78/585 (13%)

Query: 298 PEFARYFREDYRREINWQNPLGMVELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEV 357
           P+F+ Y ++D +            ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ V
Sbjct: 38  PQFSGYQQQDCQ------------ELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVV 85

Query: 358 ADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTV 417
           A+E W NH+ RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V
Sbjct: 86  AEEAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEV 145

Query: 418 TVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDD 476
            +   D    P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R F  D
Sbjct: 146 YLVRMDPLTKPMQYKVVVPKIGNILDLCTALSALSGIP-ADKMIVTDIYNHRFHRIFAMD 204

Query: 477 PLISLSTIKDDDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSS 535
             +S    +DD ++    + +    + V + +  R + +       T     +G P + +
Sbjct: 205 ENLSSIMERDDIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGS-SLFGQPFLMA 263

Query: 536 ISRDDVISSGKIQSTVQRMLSPFLK--------------------------------KES 563
           + R++  +  K+ + +   +  ++K                                  S
Sbjct: 264 VPRNN--TEDKLYNLLLLRMCRYVKISTETEETEGSLHCCKDQNINGNGPNGIHEEGSPS 321

Query: 564 LMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDL 623
            M  D  D  S      PS   +S S  ++  ++ S +   T      QL       F  
Sbjct: 322 EMETDEPDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTCKGQLTGHKKRLFTF 381

Query: 624 SVEG-------------------DKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLE 664
                                  D+ +R+   S    + +DW   L ++Y   F EN  E
Sbjct: 382 QFNNLGSTDINYIKDDTRHIRFDDRQLRLDERS---FLALDWDPDLKKRY---FDENAAE 435

Query: 665 VF-KNGPVTKKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLP 722
            F K+  V  K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP
Sbjct: 436 DFEKHESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLP 495

Query: 723 EVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGM 782
            VLV+HLKRFSYSR M+ KL+T V+FPI+D ++++++ N N+   + Y L A++NHYGGM
Sbjct: 496 PVLVVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGM 554

Query: 783 GSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           G GHYTA  K  D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 555 GGGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 599


>gi|343959652|dbj|BAK63683.1| ubiquitin carboxyl-terminal hydrolase 15 [Pan troglodytes]
          Length = 648

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 213/585 (36%), Positives = 301/585 (51%), Gaps = 78/585 (13%)

Query: 298 PEFARYFREDYRREINWQNPLGMVELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEV 357
           P+F+ Y ++D +            ELLAFLLDGLHEDLNR++ KPYI+ KDADGRPD+ V
Sbjct: 38  PQFSGYQQQDCQ------------ELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVV 85

Query: 358 ADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTV 417
           A+E W NH+ RNDSIIVD+  G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V
Sbjct: 86  AEEAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEV 145

Query: 418 TVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDD 476
            +   D    P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R F  D
Sbjct: 146 YLVRMDPLTKPMQYKVVVPKIGNILDLCTALSALSGIP-ADKMIVTDIYNHRFHRIFAMD 204

Query: 477 PLISLSTIKDDDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSS 535
             +S    +DD ++    + +    + V + +  R + +       T     +G P + +
Sbjct: 205 ENLSSIMERDDIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGS-SLFGQPFLMA 263

Query: 536 ISRDDVISSGKIQSTVQRMLSPFLK--------------------------------KES 563
           + R++  +  K+ + +   +  ++K                                  S
Sbjct: 264 VPRNN--TEDKLYNLLLLRMCRYVKISTETEETEGSLHCCKDQNINGNGPNGIHEEGSPS 321

Query: 564 LMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDL 623
            M  D  D  S      PS   +S S  ++  ++ S +   T      QL       F  
Sbjct: 322 EMETDEPDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTCKGQLTGHKKRLFTF 381

Query: 624 SVEG-------------------DKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLE 664
                                  D+ +R+   S    + +DW   L ++Y   F EN  E
Sbjct: 382 QFNNLGNTDINYIKDDTRHIRFDDRQLRLDERS---FLALDWDPDLKKRY---FDENAAE 435

Query: 665 VF-KNGPVTKKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLP 722
            F K+  V  K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP
Sbjct: 436 DFEKHESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLP 495

Query: 723 EVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGM 782
            VLV+HLKRFSYSR M+ KL+T V+FPI+D ++++++ N N+   + Y L A++NHYGGM
Sbjct: 496 PVLVVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGM 554

Query: 783 GSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           G GHYTA  K  D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 555 GGGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 599


>gi|74211276|dbj|BAE37701.1| unnamed protein product [Mus musculus]
          Length = 582

 Score =  314 bits (805), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 204/567 (35%), Positives = 296/567 (52%), Gaps = 64/567 (11%)

Query: 297 TPEFARYFREDYRREINWQNPLGMVELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEE 356
            P+F+ Y ++D +            ELLAF+LDGLHEDLNRVK KPY++ KDA+GRPD  
Sbjct: 3   APQFSGYQQQDSQ------------ELLAFILDGLHEDLNRVKKKPYLEPKDANGRPDAV 50

Query: 357 VADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMT 416
           VA E W NH  RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL     R M 
Sbjct: 51  VAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRIME 110

Query: 417 VTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLD 475
           V +  +D    P  Y VTVP  G   DL + L  +  +  +E + V ++ NH   + F  
Sbjct: 111 VFLVPADPQCRPIQYRVTVPLMGAISDLCEALSKLSGIA-AENMVVTDVYNHRFHKIFQM 169

Query: 476 DPLISLSTIKDDDHLAAYRVPKLV---KKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPL 532
           D  +S  T +DD  +  Y V        + + L +  R ++  P +A  +S    YG PL
Sbjct: 170 DEGLSHITPRDD--IFVYEVCNTSMDGSECITLPVYFREKKSRPSSA--SSGAVLYGQPL 225

Query: 533 VSSISRDDVISSGKIQSTVQRMLSPFLKK--ESLMHADSFDPSS---------------- 574
           + S+ +  +      Q+   R +S ++K+       +   +P +                
Sbjct: 226 LVSVPKHKLTLESLYQAVCDR-ISRYIKQPLPDEFLSSPLEPGACNGSRSSYEGDEEEEM 284

Query: 575 --------MVTTVDPSGE-----AHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCF 621
                    ++ V+ SGE      HS S+  + K      +  T       LV+      
Sbjct: 285 DHQEEGKEQLSEVEGSGEDDQGDDHSESAQKV-KGQPRHKRLFT-----FSLVNSCGTAD 338

Query: 622 DLSVEGD-KTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPL 680
             S+  D K +++ S ST   + +DW  +    Y         E   +    +K +   +
Sbjct: 339 INSLATDGKLLKLNSRST---LAIDWDSETRSLYFDEQESEACEKHLSMSQPQKKKKAAV 395

Query: 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKH 740
           +L  C+E F   E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + 
Sbjct: 396 ALRECIELFTTMETLGEHDPWYCPTCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRD 455

Query: 741 KLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWY 800
           KL+T V FP+   N++++V ++ S+R  +Y+L A++NHYG MG GHYTA+ K     +WY
Sbjct: 456 KLDTVVEFPVRALNMSEFVCDR-SARPYVYDLIAVSNHYGAMGVGHYTAYAKNRLNGKWY 514

Query: 801 NFDDSHISPINEDDVKSAAAYVLFYRR 827
            FDDS +S  +ED + + AAYVLFY+R
Sbjct: 515 YFDDSSVSLASEDQIVTKAAYVLFYQR 541


>gi|297285805|ref|XP_002802845.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19-like, partial
            [Macaca mulatta]
          Length = 1394

 Score =  310 bits (794), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 221/663 (33%), Positives = 313/663 (47%), Gaps = 130/663 (19%)

Query: 274  GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
            G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 685  GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 744

Query: 320  ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                                E +AFLLDGLHEDLNR+++KPY +
Sbjct: 745  RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 804

Query: 346  SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
            + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 805  TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 864

Query: 406  PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
            PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 865  PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVRVK-PENLRLAE 922

Query: 465  IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQE-----QE 515
            +  +   R FL  P  SL T+   D L  + +  P+L K + V L++  R Q       +
Sbjct: 923  VIKNRFHRVFL--PSHSLDTVSPSDMLLCFELLSPELAKERVVVLEVQQRPQVPSVPISK 980

Query: 516  PGAAQTTSQ--------------------------WKAY---------GTPLVSSISRDD 540
              A Q   Q                          W  +         G P + S+    
Sbjct: 981  CAACQRKQQSEDEKLKRCTRCYRVGYCNQLCQKTHWPDHKGLCRPENIGYPFLVSVP--- 1037

Query: 541  VISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASS 600
              +S    + + ++L  + +    +    F P  M       G     S+ ++  E   S
Sbjct: 1038 --ASRLTYARLAQLLEGYARYSVSVFQPPFQPGRMALESQSPGCTTLLSTGSL--EAGDS 1093

Query: 601  SKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLE 660
             +    P   +  +D SN    L  +GD         T + +  D S  L+ + N    E
Sbjct: 1094 ERDPIPPQFFIYKIDSSNREQRLEDKGD---------TPLELGDDCSLALVWRNNERLQE 1144

Query: 661  NLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQAS 713
             +L   K        G   + AR    +L  CL  F R E L PE+ WYCPQCK+ R+AS
Sbjct: 1145 FVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRPEVLAPEEAWYCPQCKQHREAS 1204

Query: 714  KKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPIHDFNLTKYVANKNSSRRQLYE 771
            K+L LWRLP VL++ LKRFS+ RS   + K+   V FP+ + +L+K+   +   +   Y+
Sbjct: 1205 KQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPVRNLDLSKFCIGQKEEQLPSYD 1263

Query: 772  LYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFDDSHISPINEDDVKSAAAYVLF 824
            LYA+ NHYGGM  GHYTA  +L ++         W  FDDS ++ ++E  V +  AYVLF
Sbjct: 1264 LYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFDDSTVTTVDESQVVTRYAYVLF 1323

Query: 825  YRR 827
            YRR
Sbjct: 1324 YRR 1326


>gi|444510625|gb|ELV09647.1| Ubiquitin carboxyl-terminal hydrolase 4 [Tupaia chinensis]
          Length = 898

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 270/928 (29%), Positives = 409/928 (44%), Gaps = 189/928 (20%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G   L             P  IDNS L +D  ++       
Sbjct: 19  WFKQWKKYVGFDSWDMYSVGERNL------------FPGPIDNSGLFSDPESQ------T 60

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 61  LKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 120

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T
Sbjct: 121 CENSDPTNVLS-CHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNT 179

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS 234
           + DA +   Q +++E   N +GT  + + Q NG                      G+ AS
Sbjct: 180 VQDAGLYQGQVLVIEP-QNEDGTWPRQTQQSNG---------------------SGFPAS 217

Query: 235 KGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCL 294
                 ++ +   SP++                      GL GL NLGNTCFMNSA+QCL
Sbjct: 218 ------YNCQEPPSPHIQP--------------------GLCGLGNLGNTCFMNSALQCL 251

Query: 295 VHTPEFARYF-REDYRREINWQNPLGMV-------------------------------- 321
            +T     YF +++Y  EIN  NPLGM                                 
Sbjct: 252 SNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIRQMWSGREAHVAPRMFKTQVG 311

Query: 322 ---------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWA--- 363
                          ELLAFLLDGLHEDLNRVK KPY++ KDA+GRPD     +  A   
Sbjct: 312 RFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDASGRLDQMAVCG 371

Query: 364 NHIARNDSIIVDVC--QGQYKSTLVCPV--CNKVSVTFDPFMYLSLPLQATTTRTM---- 415
              A +D   +  C   G   +   CP+  C  +     P       L  ++  ++    
Sbjct: 372 ETAACSDDPFLHCCLSAGWLPTQGPCPLLCCPLIWALTAPGTVSRRALLPSSRPSLLLEH 431

Query: 416 TVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF-- 473
            VTV  S     P  Y VTVP  G   DL + L  +  +  +E + V ++ NH   +   
Sbjct: 432 PVTVAVS-----PLQYRVTVPLMGAVSDLCEALSKLSGIA-AENMVVTDVYNHRFHKIFQ 485

Query: 474 LDDPLISLSTIKDDDHLAAYRVPKL-VKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPL 532
           +D+    L+ I   D +  Y V    V  +  + L    +E++   + T+     YG PL
Sbjct: 486 MDE---GLNHIMPRDDIFVYEVCSTSVDGSECITLPIYFRERKSRPSSTSPGAVLYGQPL 542

Query: 533 VSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADS----------------------- 569
           + S+ +  +      Q+   R +S ++K+     + S                       
Sbjct: 543 LVSVPKHKLTLESLYQAVCDR-ISRYIKQPLPAESGSAPLELGACNGSRGSCEGEDEEEM 601

Query: 570 ---FDPSSMVTTVDPSGE---AHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDL 623
               +    ++  + SGE    H  S +    +    SK +        LV+        
Sbjct: 602 EHQEEGREQLSDAEGSGEDELGHDPSEATQKVKGQPCSKRL----FTFSLVNSYGTADIN 657

Query: 624 SVEGD-KTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVT---KKARTEP 679
           S+  D K +++ S ST   + +DW     E  N ++ E   E ++        +K +   
Sbjct: 658 SLATDGKLLKLNSRST---LAIDWDS---ETRNLYYDEQESEAYEKHASMLQPQKKKKAA 711

Query: 680 LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
           ++L  C+E F   E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  +
Sbjct: 712 VALRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWR 771

Query: 740 HKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRW 799
            KL+T V FPI   N++++V +  S+R  +Y+L A++NHYG MG GHYTA+ K     RW
Sbjct: 772 DKLDTVVEFPIRALNMSEFVCDL-SARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGRW 830

Query: 800 YNFDDSHISPINEDDVKSAAAYVLFYRR 827
           Y FDDS++S  +ED + + AAYVLFY+R
Sbjct: 831 YYFDDSNVSLASEDQIVTKAAYVLFYQR 858


>gi|431917785|gb|ELK17027.1| Ubiquitin carboxyl-terminal hydrolase 11 [Pteropus alecto]
          Length = 881

 Score =  303 bits (775), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 276/919 (30%), Positives = 395/919 (42%), Gaps = 219/919 (23%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV        GD  S            S  P  I+N+ L  D        G  
Sbjct: 56  WYKQWEVYVQ------GGDQDS------------STFPGCINNAKLFEDQVNWCLKKG-- 95

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVIS-SGLSQTELAVEVYPLRLQ 116
               L+EG DY+LLP   W+ L SWYG   G P + RKV+   G  +    VEVYP+ L 
Sbjct: 96  ----LVEGEDYVLLPAAAWHYLVSWYGLEHGQPPIERKVVELRGFCK----VEVYPVELL 147

Query: 117 LLVMP-RGECSTIRISKKETIGELHRRACSIFYLN-LEQICIWDYYGHRKHALMNDMDRT 174
           L+     G   T   S+ ++I  +   A   F ++  E+  +W          + +   T
Sbjct: 148 LVQHSDMGTPHTAEFSQTDSIDLVSCTAREQFLVSPQEETRLWVEKAQGSFERLCNTRVT 207

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS 234
           + DA ++  Q I++E                                  + S  G W ++
Sbjct: 208 VFDAALKSGQLIIME----------------------------------TRSKDGTWPSA 233

Query: 235 KGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCL 294
           +          + + N AS  D D               G+ GL NLGNTCFMNSA+QCL
Sbjct: 234 Q----------THAVNRASKEDEDFQ----------GQPGICGLTNLGNTCFMNSALQCL 273

Query: 295 VHTPEFARYF-REDYRREINWQNPLGMV-------------------------------- 321
            + P+   YF +  Y  E+N+ NPLGM                                 
Sbjct: 274 SNVPQLTEYFLKNRYLEELNFCNPLGMKGEIAEAYADLVKQAWSGHHRSIVPQVFKTKVG 333

Query: 322 ---------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHI 366
                          ELL+FLLDGLHEDLNRVK K Y++  DA GRPD+EVA E W NH 
Sbjct: 334 HFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVELCDAAGRPDQEVAQEAWQNHK 393

Query: 367 ARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSA 426
            RNDS+IVD   G +KSTLVCP C  VSVTFDPF YLS+PL  +  R M V   + D   
Sbjct: 394 RRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSVPLPVSHKRVMEVFFVSMDPRR 453

Query: 427 LPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTI 484
            P  + + VPK G+  DL   L     +   E + VA++ +H   +   L++   SLS+I
Sbjct: 454 KPEQHRLVVPKKGKISDLCVALAKHTGVS-PERMMVADVFSHRFYKIYQLEE---SLSSI 509

Query: 485 KDDDHLAAYRVP------KLVKKAVFLQLIHRLQEQEPGAAQTTSQWK--AYGTPLVSSI 536
            D D +  Y V       +  ++ V L +   L+E+ P      S +    +G PL+ S+
Sbjct: 510 LDRDDIFIYEVSGRSAICENSREDVVLPIY--LRERTPARDYNNSYYGLMLFGHPLLVSV 567

Query: 537 SRDDVISSGKIQSTVQRMLSPFLKKES------------LMHADSFDPSSMV---TTVDP 581
            RD  +S   +   +   LS ++ + S            L   DS      V   ++ DP
Sbjct: 568 PRDR-LSWDSLYHILLYRLSRYVTRPSSDDEDDGDEKADLEDKDSIPKPGHVARGSSQDP 626

Query: 582 SGEAHSNSSSNIAKEDASSSKAVTLPNLP----------LQLVDESNVCFDLSVEGDKTI 631
             E    SS       A    +    + P          LQ V+ SN   D S   + T 
Sbjct: 627 GPEQAGPSSRVAGGSRAPVDNSPGPSHWPQRARRKHLFTLQTVN-SNGTSDRSNFNEDTH 685

Query: 632 RIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLR 691
             P       + +DW  ++ ++Y         EV   G V            +C +  L 
Sbjct: 686 AQP------YIAIDWEPEMKKRYYD-------EVEAEGYVKHDCVG---YCPSCKQHQLA 729

Query: 692 EEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIH 751
            + L   D+W  P+                   L+IHLKRFSY++  + KL+T V FPI 
Sbjct: 730 TKKL---DLWKLPE------------------TLIIHLKRFSYTKFSREKLDTLVEFPIR 768

Query: 752 DFNLTKYVAN-KNSSRRQL--YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHIS 808
           D + +++V   +N S  +L  Y+L A++NHYGG+  GHYT      D  +W+ FDD+ +S
Sbjct: 769 DLDFSEFVIKPQNESAPELYKYDLIAVSNHYGGLRDGHYTTFACNKDSGQWHYFDDNSVS 828

Query: 809 PINEDDVKSAAAYVLFYRR 827
           P+ E+ ++S AAYVLFY+R
Sbjct: 829 PVTENQIESKAAYVLFYQR 847


>gi|388583864|gb|EIM24165.1| UCH-domain-containing protein [Wallemia sebi CBS 633.66]
          Length = 1059

 Score =  300 bits (769), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 263/925 (28%), Positives = 429/925 (46%), Gaps = 174/925 (18%)

Query: 58   GPEIVDTLLEGRDYILLPQEVWNQLHSWYG-GGPTLARKVI-SSGLSQTELAVEVYPLRL 115
            G +++  L  G    ++P++V  +L+ W+G  GP + R V+ +S +  TE  VE+YP   
Sbjct: 114  GKDLLPNLSIGDQIEIIPEDVNIKLNDWFGYQGPQIKRIVVKTSDIPNTE-RVELYPPTF 172

Query: 116  QLLVMPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTL 175
            +LL +   + +T  +S++ET  +L   A     L +    ++              D  +
Sbjct: 173  RLLALTSQKPTTSPVSEQETTFDLSIDAPLSMLLGMSIATLYP-------------DSLV 219

Query: 176  DDANIQMDQDILVEVLDNVNGT----------NCKSSIQDNGFAEKKASSVLVEPSKS-- 223
            D +N+   +  L  + D  N            N +  + D      K    ++E   +  
Sbjct: 220  DSSNVSQ-RARLWRIPDTTNSPLKIDTLYYLPNTQRDLIDTSNGSLKIYEAMLEDGGTFC 278

Query: 224  --SLSIAGGWSASKGTSRNHSSEISTSPNL--ASARDSDNT--LGSSGVTTRGASVGLTG 277
               L   G W  +             S  L    ++ S NT  +  S  + +  + GL G
Sbjct: 279  LEVLDKFGNWPYNDYEQSVLDQPFGKSGFLDRLESKQSSNTKMMTRSQSSQKVKTKGLVG 338

Query: 278  LLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV--------------- 321
            L NLGNTCFMNSA+QCL +T E + YF    Y +E+N  NPLGM                
Sbjct: 339  LQNLGNTCFMNSALQCLSNTSELSVYFLSGLYSKELNPDNPLGMSGQVAESFGQLVNKLW 398

Query: 322  --------------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDA 349
                                            E LAFLLDGLHEDLNR+K KPY +  D 
Sbjct: 399  YGSSNSVAPREFKYTLSKFAPSFAGYGQQDTQEFLAFLLDGLHEDLNRIKSKPYTEIPDW 458

Query: 350  DGRPDEEVAD---EYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLP 406
            +G  D +VA      W  +  RNDSIIVD+ QGQ+KST+ CP C++VS+TFDPFMYL+LP
Sbjct: 459  EGGTDADVAKLAKTCWDLYKQRNDSIIVDLFQGQFKSTVNCPECDRVSITFDPFMYLTLP 518

Query: 407  LQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQ 466
            L   +    +V     D +       + +P +   + +   +  I     +      E +
Sbjct: 519  LPIQSKWNGSVYYIPYDYNKKRLRIDLELPSNASFKLMKNKISQIVDTNSNNLWVAEEYK 578

Query: 467  NHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQE----PGAAQTT 522
             +  + FLDD L+S   ++  D    Y +P  + +    + I R+ E      P  + T 
Sbjct: 579  GNLFKSFLDDELVS--EMQSGDLCFVYELPIHIPQDRH-EKIDRVFETNWVMFPVYSSTF 635

Query: 523  SQ-----WKAYGTPLVSSISRDDVISSGKI-QSTVQRMLSPFLKKESL----MHADSFD- 571
             +      + +G P++ ++ R D  +  K+ Q+ +++ L      E+L    +H+     
Sbjct: 636  KESSSLSGEVFGKPMLIALLRSDAQNYQKVYQAIIEKYLHFTKNDEALKKINIHSKDITL 695

Query: 572  -----PSSMVTTVDPSGEAHSNSSSNIAKEDASSSK--AVTLPNL------------PLQ 612
                 PS+   +   S + ++  S+NI +   +  K  A  + N+            P++
Sbjct: 696  RHLEAPSNSYYSYRTS-DVNTGRSNNIERNSKTDLKFRASIVENILKSTLLKKNEKNPVE 754

Query: 613  LVDESNVC---FDLSVEGDKTIRIPS-------------SSTSIVVY-----VDWSQKLL 651
             +++ N      DL ++ D +++  S              S S++ +     V+W   L 
Sbjct: 755  HIEDVNKIDDQGDLEMKQDNSLQDQSIESLYENLETERQKSLSLIKFGEALVVEWKNDLA 814

Query: 652  EKYNTHFLEN--LLEVFK--------NGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMW 701
            E+     L +  L E F             T K+  + +++  CL+ F +EE L  ED+W
Sbjct: 815  EEVFGDDLSSTGLWEQFDVIEDPQYVQSKQTSKSPKKGITIEDCLDEFTKEEKLGEEDLW 874

Query: 702  YCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNL-----T 756
            YC +C++ +QA+KK DLW++P+VLV+HLKRF+ SR  + KL+ FV+FPI + N+      
Sbjct: 875  YCSKCQKHQQATKKFDLWKVPDVLVVHLKRFASSRYNRDKLDQFVDFPIEELNIDDRVGE 934

Query: 757  KYVAN--------------KNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNF 802
            K VAN              +NS    +Y+LYA+ NHYGG+G GHYT++ +  +   +Y+F
Sbjct: 935  KQVANSIKLNGGNPVEVGIENSEEDAIYDLYAIDNHYGGLGGGHYTSYARNNESGEFYHF 994

Query: 803  DDSHISPINEDDVKSAAAYVLFYRR 827
            DDS++S +NE++VK+ AAY+LFYR+
Sbjct: 995  DDSYVSKVNEENVKTKAAYLLFYRK 1019


>gi|355727895|gb|AES09346.1| ubiquitin specific peptidase 11 [Mustela putorius furo]
          Length = 747

 Score =  298 bits (762), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 256/838 (30%), Positives = 368/838 (43%), Gaps = 186/838 (22%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV        GD  S               P  I+N+DL  D        G  
Sbjct: 7   WYKQWEAYVQ------GGDKDS------------GTFPGCINNADLFEDQVNWHLRKG-- 46

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
               L+EG DY+LLP   W+ L  WYG   G P + RKV+     Q    VEVYP+ L L
Sbjct: 47  ----LVEGEDYVLLPAAAWHYLVDWYGLEHGQPPIERKVVELPSVQ---KVEVYPVELLL 99

Query: 118 LVMPRGECS-TIRISKKETIGELHRRACSIFYLN-LEQICIWDYYGHRKHALMNDMDRTL 175
                 + + T + S+ +++  + R A   F ++  E+  +W          + +   T+
Sbjct: 100 ARHSDMDTTHTAQFSRTDSVDLVLRTAREQFLVSPQEETRLWIKNAEGSFERLCNTRVTV 159

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA ++  Q +++E   N +GT                                 W +++
Sbjct: 160 LDAALKTGQVVIMET-RNKDGT---------------------------------WPSAQ 185

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
             + N + E           + +N  G  G+          GL NLGNTCFMNSA+QCL 
Sbjct: 186 PQAVNTALE-----------EDENFQGQPGIC---------GLTNLGNTCFMNSALQCLS 225

Query: 296 HTPEFARYF-REDYRREINWQNPLGMV--------------------------------- 321
           + P+   YF +  Y  E+N+ NPLGM                                  
Sbjct: 226 NVPQLTEYFLKNRYLEELNFCNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKTKVGH 285

Query: 322 --------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELL+FLLDGLHEDLNRVK K Y++  DA GRPD+EVA E W NH  
Sbjct: 286 FASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVELCDAAGRPDQEVAQEAWQNHKR 345

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDS+IVD   G +KSTLVCP C  VSVTFDPF YLS+PL  +  R M V   + D    
Sbjct: 346 RNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSVPLPVSHKRVMEVFFVSMDPRRK 405

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTIK 485
           P  + + VPK G+  DL   L     +   E + VA++ +H   +   L++   SLS+I 
Sbjct: 406 PEQHRLVVPKKGKISDLCVALAKHTGMS-PERMMVADVFSHRFYKIYQLEE---SLSSIL 461

Query: 486 DDDHLAAYRVP------KLVKKAVFLQLIHRLQEQEPGAAQTTSQWKA--YGTPLVSSIS 537
           D D +  Y V       +  ++ V L +   L+E+ P      S +    +G PL+ S+ 
Sbjct: 462 DRDDIFIYEVSGRSAIGENTREDVVLPIY--LRERTPARDYNNSYYGLMLFGHPLLVSVP 519

Query: 538 RDDVISSGKIQSTVQRMLSPFLKKES-----------LMHADSFDPSSMVT--TVDPSGE 584
           RD  +S   +   +   LS ++ + S           +   D+      V   +   SG 
Sbjct: 520 RDR-LSWDALYHILLYRLSRYVTRPSSDDEDDGDEKDMEDKDNIPKPGHVAGGSSQDSGP 578

Query: 585 AHSNSSSNIAKEDASSSKAVTLPN-----------LPLQLVDESNVCFDLSVEGDKTIRI 633
             +  SS +A    +   +   P+             LQ V+ SN   D S   + T   
Sbjct: 579 EQAGPSSGVAGGSRAPVDSSPGPSHWPQRARRKHLFTLQTVN-SNGTSDRSTFNEDTHAQ 637

Query: 634 PSSSTSIVVYVDWSQKLLEKYNTHF-LENLLEVFKNGPVTKKARTEPLSLYTCLEAFLRE 692
           P       + +DW  ++ ++Y      E  ++    G V KKA   P+ L  C+E F   
Sbjct: 638 P------YIAIDWEPEMKKRYYDEVEAEGYVKHDCVGYVLKKA---PVRLQECIELFTTV 688

Query: 693 EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPI 750
           E L  E+ WYCP CK+ + A+KKLDLW LPE L+IHLKRFSY++  + KL+T V FPI
Sbjct: 689 ETLEKENPWYCPTCKQHQLATKKLDLWMLPETLIIHLKRFSYTKFSREKLDTLVEFPI 746


>gi|224170211|ref|XP_002339354.1| predicted protein [Populus trichocarpa]
 gi|222874960|gb|EEF12091.1| predicted protein [Populus trichocarpa]
          Length = 241

 Score =  297 bits (761), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 152/241 (63%), Positives = 181/241 (75%), Gaps = 5/241 (2%)

Query: 465 IQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQ 524
           ++NH  QRFL+DPLISLSTIKDDDHLAAY++ K +KK + L+LIHR QEQE G  +   +
Sbjct: 1   VRNHLFQRFLEDPLISLSTIKDDDHLAAYKIAKSLKKTLLLRLIHRCQEQETGDTKAAQK 60

Query: 525 WKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVD---- 580
            K +GTPLVS IS DDVI+ G IQ  V  MLSP L+ ESL  AD  +P S +   D    
Sbjct: 61  LKPFGTPLVSLISHDDVITRGDIQKVVHTMLSPLLRSESLRQADIPEPCSSLAASDMCHH 120

Query: 581 -PSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
             S EA +N  S+   +D+S S+AVTL  LPLQLV+ESN C DLSV  DKTI++ S+STS
Sbjct: 121 SSSDEACTNPLSDSMNKDSSGSRAVTLFKLPLQLVEESNACIDLSVGEDKTIKLSSTSTS 180

Query: 640 IVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPED 699
           ++VYVDWSQ+LLEKY+ H+LENL EVFK GPV KKARTEPLSLYTCLE FLREEPLVPED
Sbjct: 181 MLVYVDWSQELLEKYDIHYLENLPEVFKYGPVNKKARTEPLSLYTCLEGFLREEPLVPED 240

Query: 700 M 700
           M
Sbjct: 241 M 241


>gi|296089361|emb|CBI39133.3| unnamed protein product [Vitis vinifera]
          Length = 1092

 Score =  294 bits (752), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 167/311 (53%), Positives = 195/311 (62%), Gaps = 49/311 (15%)

Query: 232 SASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAI 291
           SA+   SR  S EI     +    DS    G          +GLTGL N+GNTCFMNSAI
Sbjct: 64  SANDYLSR--SDEILLELQVYGLTDSMKGRGGKKDDQMAGFLGLTGLHNIGNTCFMNSAI 121

Query: 292 QCLVHTPEFARYFREDYRREINWQNPLGM------------------------------- 320
           QCLVHTP+   YF  DYR+EIN++NPLGM                               
Sbjct: 122 QCLVHTPKLVDYFLGDYRKEINYENPLGMNGELALAFGDLLRKLWAPGATPVAPRMFKLK 181

Query: 321 ----------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWAN 364
                            E LAFLLDGLHEDLNRVK KPYI++ D DGRPDEEVADEYW N
Sbjct: 182 LSSFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYIEAGDPDGRPDEEVADEYWRN 241

Query: 365 HIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDG 424
           H+ARNDSIIV++CQGQ++S LVCPVC KVSVTFDPFMYLSLPL +TT RTMTVTV ++DG
Sbjct: 242 HLARNDSIIVNLCQGQFRSMLVCPVCKKVSVTFDPFMYLSLPLPSTTMRTMTVTVLSTDG 301

Query: 425 SALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTI 484
           + LP   TVTVPK GR +DLIQ L   CSL+  E L VAEI N+ I R+L++P  SL+ I
Sbjct: 302 TTLPYPCTVTVPKCGRLKDLIQALSIACSLRNDERLLVAEIYNNCIIRYLEEPSDSLALI 361

Query: 485 KDDDHLAAYRV 495
           +D D L AYR+
Sbjct: 362 RDGDRLVAYRL 372



 Score =  254 bits (649), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 140/307 (45%), Positives = 184/307 (59%), Gaps = 13/307 (4%)

Query: 526  KAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEA 585
            K +G PLV  +S  +  +   I     ++L PF     +   DS D  +     +   E 
Sbjct: 787  KMFGIPLVVRMS--ECSNGCDIHKQFLKLLDPFF----MPTEDSLDDITAGNAANEDTEM 840

Query: 586  HSNSSSNIAKEDASSSKAVTLP-----NLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSI 640
                SS ++  DA+S            N    L DE       ++  +K   I      +
Sbjct: 841  EDAISSTVSNGDANSDSETGDELQLGNNFSFYLTDEKGSTKGSNINMNKLELISQLPRRL 900

Query: 641  VVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
             V V W  +++EKY+T  L  L E+ K     K+ + E +SLY CLEAFL+EEPL PEDM
Sbjct: 901  NVLVHWPYRMIEKYDTCLLSLLPEICKPELFAKRPQ-ESVSLYKCLEAFLKEEPLGPEDM 959

Query: 701  WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
            W CP CK+ RQASKKLDLWRLPE+LVIHLKRFSYSR  K+KLETF++FPI D +L+ Y+A
Sbjct: 960  WNCPCCKKHRQASKKLDLWRLPEILVIHLKRFSYSRFWKNKLETFIDFPIDDLDLSTYIA 1019

Query: 761  NKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAA 820
             KNS     Y+LYA+ NHYGGMGSGHYTA ++    N+WY FDDS +SPI ED++K++AA
Sbjct: 1020 QKNSHLSNHYKLYAICNHYGGMGSGHYTAFVR-HGGNQWYEFDDSRVSPIGEDEIKTSAA 1078

Query: 821  YVLFYRR 827
            YVLFY+R
Sbjct: 1079 YVLFYQR 1085


>gi|241705172|ref|XP_002413236.1| ubiquitin specific protease, putative [Ixodes scapularis]
 gi|215507050|gb|EEC16544.1| ubiquitin specific protease, putative [Ixodes scapularis]
          Length = 643

 Score =  292 bits (748), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 206/629 (32%), Positives = 315/629 (50%), Gaps = 105/629 (16%)

Query: 272 SVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM---------- 320
           ++G TGL NLGNTCFMNS +QCL +T EF  YF    ++ EIN +NPLGM          
Sbjct: 3   ALGYTGLDNLGNTCFMNSVLQCLANTREFRDYFLGGVFQGEINTENPLGMRGELAVAFAV 62

Query: 321 -------------------------------------VELLAFLLDGLHEDLNRVKHKPY 343
                                                 E +AFLLDGLHEDLNR+ +KPY
Sbjct: 63  LLRWLWSGAQRSYAPSRLKSLISVKAPQFTGFAQHDAQEFMAFLLDGLHEDLNRIHNKPY 122

Query: 344 IKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYL 403
           ++S D+  RPDE VA+E W+ +  RNDSI+VD+ QGQYKST++CP C KVS+ FDPF+YL
Sbjct: 123 VESVDSANRPDEVVAEESWSRYKLRNDSIVVDLFQGQYKSTVICPECQKVSINFDPFLYL 182

Query: 404 SLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVA 463
           S+PL     +   V  +  D   +P    + + +  R  DL   +     +   + L+V 
Sbjct: 183 SVPL-PKKQKIFVVHFYRWDPDQVPIKLRLRLNQDARVEDLKDEIFKKTHV-SPKNLRVL 240

Query: 464 EIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTS 523
           E+ N  I +  +    SL  I   D + A+   +  +  + L  +     +  GA    +
Sbjct: 241 EVYNRKIYKVFNRDDDSLMDITPKDLIFAWEGVEF-RGCLQLCKLGFAPFRRLGATSCIT 299

Query: 524 QWKA-------YGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSS-- 574
             +A       +  P+ S+    D  ++G    +V+ +      +  L  A+  DP S  
Sbjct: 300 ASRACRHSVNVFQPPVKSNKCALDA-AAGTPPGSVEPL------EAELDEAEGLDPVSNE 352

Query: 575 -----MVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDK 629
                 VT+V P  E+   S  +   ED   S++ TL            +C      G  
Sbjct: 353 GGPMFGVTSVVPYAES-CPSKVDFVFEDRGESRSKTL------------LC------GTW 393

Query: 630 TIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAF 689
            I + + +     ++ W +     +++    +L+ +  +G  T  A  + +SL  CL  F
Sbjct: 394 FIIVENHALLCSTWLYWFRH--TPHHSFGSRDLVLMAADGK-TSFAEEDGISLDQCLTLF 450

Query: 690 LREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM-KHKLETFVNF 748
              E L P++ WYCP CKE RQA+K+L LWRLP VL+I LKRFS++RS+ + K++  V+F
Sbjct: 451 TEPEVLSPQEAWYCPGCKEHRQATKELSLWRLPPVLIIQLKRFSFTRSIFRDKIDKMVDF 510

Query: 749 PIHDFNLTKYV---ANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLD-------ENR 798
           PI+  +++ Y    A ++   + +Y+L+A+ NH+GGM  GHYTA  +  D       E  
Sbjct: 511 PINGLDVSPYYCGPACESGGPQPVYDLFAVINHHGGMLGGHYTAFGRCTDATDTRLSEVG 570

Query: 799 WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           W  FDDS ++ +++  V ++AAY+LFYRR
Sbjct: 571 WRLFDDSRVNAVSDARVATSAAYMLFYRR 599


>gi|90075590|dbj|BAE87475.1| unnamed protein product [Macaca fascicularis]
          Length = 812

 Score =  289 bits (739), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 253/832 (30%), Positives = 354/832 (42%), Gaps = 189/832 (22%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV        GD  S            S  P  I+N+ L  D           
Sbjct: 66  WYKQWEAYVQ------GGDQDS------------STFPGCINNATLFQDEINW------R 101

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L+EG DY+LLP   W+ L SWYG   G P + RKVI     Q    VEVYP+  +L
Sbjct: 102 LKEGLVEGEDYVLLPAAAWHYLVSWYGLEHGQPPIERKVIELPNIQ---KVEVYPV--EL 156

Query: 118 LVMPRGECS---TIRISKKETIGELHRRACSIFYLN-LEQICIWDYYGHRKHALMNDMDR 173
           L++   + S   T++ S  ++IG + R A   F +   E   +W          + D   
Sbjct: 157 LLVRHNDLSRSHTVQFSHTDSIGMVLRTARERFLVEPQEDTRLWAKNSEGSLDRLYDTHI 216

Query: 174 TLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGW-S 232
           T+ DA ++  Q I++E                     KK                G W S
Sbjct: 217 TVLDAALETGQLIIME-------------------TRKKD---------------GTWPS 242

Query: 233 ASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQ 292
           A       H SE           + ++  G  G+          GL NLGNTCFMNSA+Q
Sbjct: 243 AQLHVMNKHMSE-----------EDEDFKGQPGIC---------GLTNLGNTCFMNSALQ 282

Query: 293 CLVHTPEFARYFRED-YRREINWQNPLGMV------------------------------ 321
           CL + P+   YF  + Y  E+N++NPLGM                               
Sbjct: 283 CLSNVPQLTEYFLNNCYLEELNFRNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNK 342

Query: 322 -----------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWAN 364
                            ELL+FLLDGLHEDLNRVK K Y++  DA GRPD+EVA E W N
Sbjct: 343 VGHFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVELCDAAGRPDQEVAQEAWQN 402

Query: 365 HIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDG 424
           H  RNDS+IVD   G +KSTLVCP C  VSVTFDPF YLS+PL  +  R + V     D 
Sbjct: 403 HKRRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSVPLPISHKRVLEVFFIPMDP 462

Query: 425 SALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLS 482
              P  + + VPK G+  DL   L     +   E + VA++ +H   +   L++P   LS
Sbjct: 463 RRKPEQHRLVVPKKGKISDLCVALSKHTGIS-PERMMVADVFSHRFYKLYQLEEP---LS 518

Query: 483 TIKDDDHLAAYRVPKLV------KKAVFLQLIHRLQEQEPGAAQTTSQW--KAYGTPLVS 534
           +I D D +  Y V   +      ++ + + +   L+E+ P      S +    +G PL+ 
Sbjct: 519 SILDRDDIFVYEVSGRIEAIEGSREDIVVPVY--LRERTPARDYNNSYYGLMLFGHPLLV 576

Query: 535 SISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSF-------------DPSSMVTTVDP 581
           S+ RD     G     + R+     K  S    D                PS+  +  DP
Sbjct: 577 SVPRDRFTWEGLYNVLMYRLSRYVSKPNSDDEDDGDEKEDDEEDKDDVPGPSTGGSLRDP 636

Query: 582 SGEAHSNSSSNIAKEDASSSKAVTLPNLP----------LQLVDESNVCFDLSVEGDKTI 631
             E    SS    +        +     P          LQ V+ +          D+T 
Sbjct: 637 EPEQAGPSSGVTNRCPFLLDNCLGTSQWPPRRRRKQLFTLQTVNSNGT-------SDRTT 689

Query: 632 RIPSSSTSIVVYVDWSQKLLEKYNTHF-LENLLEVFKNGPVTKKARTEPLSLYTCLEAFL 690
                     + +DW  ++ ++Y      E  ++    G V KKA   P+ L  C+E F 
Sbjct: 690 SPEEVHAQPYIAIDWEPEMKKRYYDEIEAEGYVKHDCVGYVMKKA---PVRLQECIELFT 746

Query: 691 REEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKL 742
             E L  E+ WYCP CK+ + A+KKLDLW LPE+L+IHLKRFSY++  + KL
Sbjct: 747 TVETLEKENPWYCPSCKQHQLATKKLDLWMLPEILIIHLKRFSYTKFSREKL 798


>gi|324504579|gb|ADY41976.1| Ubiquitin carboxyl-terminal hydrolase 4 [Ascaris suum]
          Length = 847

 Score =  287 bits (735), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 258/862 (29%), Positives = 392/862 (45%), Gaps = 167/862 (19%)

Query: 40  GIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGG----PTLARK 95
            +DNS+L      E    G  +   L+E +D++LLP   ++ L   YG        + R 
Sbjct: 57  AVDNSNL-----CEGAEKGFALKKNLIEKQDFVLLPLAAFSVLRRTYGLAIEERDLIERT 111

Query: 96  VISSGLSQTELAVEVYPLRLQLLVMPR-GECSTIRISKKETIGELHRRACSIFYLNLEQI 154
           V+ S  S   L +EVYP  +++      GE  TI I   E+   + +RA  +  ++ +  
Sbjct: 112 VVGSDRSPGSLHIEVYPATIRIARSDNIGEEHTIEIFSGESFESIKKRALEVLKID-QHS 170

Query: 155 CIWDYYGHRKHALMNDMDRTLDDANIQM---DQDILVEVLDNVNGTNCKSSIQDNGFAEK 211
            I  Y          D+ R L+ A+++      D++V  + +++ T+  ++  +N     
Sbjct: 171 TIQCYLAEE------DLYRRLNVADLETVLSQDDLVVVDVLDIHSTDLSNTSTNN----- 219

Query: 212 KASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGA 271
             S VL    KSS  +  G S         ++ IST P   S R                
Sbjct: 220 --SKVLF--GKSSDVMRNGLS---------TNAISTQPAHKSYRP--------------- 251

Query: 272 SVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM---------- 320
             G+ GL NLGNTCFMNSA+QCL +  E   YF    Y+ +IN +N LGM          
Sbjct: 252 --GVCGLENLGNTCFMNSALQCLSNVRELTEYFLNGCYKHDINEENVLGMHGQLARAYAD 309

Query: 321 -------------------------------------VELLAFLLDGLHEDLNRVKHKPY 343
                                                 ELL+FLLDGLHEDLNRVK K Y
Sbjct: 310 LMEQLWNGSNRSMAPRKLKAVLGQYVQQFSGYSQHDSQELLSFLLDGLHEDLNRVKKKVY 369

Query: 344 IKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYL 403
           +++KD+ GRPD  VA E W  +   NDS+IVD   GQ KST+VCP C  VSV FDPF +L
Sbjct: 370 LEAKDSGGRPDSVVAAEAWQMYKMGNDSVIVDYLHGQLKSTVVCPQCKFVSVKFDPFCFL 429

Query: 404 SLPL---QATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEEL 460
           SLPL   +      MT+     D   +   YTV V  +   +++  ++    +L  S  L
Sbjct: 430 SLPLPPKERIHKIVMTLVPLNPDRKWV--KYTVLVTFNTMVKEVRALMRKQSALGNSLIL 487

Query: 461 KVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQ 520
            V  + N ++ R ++D         D+   AAY +P        L  I+  Q  +     
Sbjct: 488 FVV-LHNKALVRIMND---------DESLAAAYSMP--------LNQIYAYQVADANDTI 529

Query: 521 TTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVD 580
           T        +PL     R+ +++S  + +    M+ P          DS     +  +V 
Sbjct: 530 T--------SPLNIIQVRNQLVTSKDVVTVPLLMMVP--------SPDSLSSDFITGSVL 573

Query: 581 P-------SGEAHSNSSSNIAKE-DASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIR 632
           P            SN  +N   E D ++   +  P+L +   D +N+   +++ G+K   
Sbjct: 574 PRIREYFAKDHKRSNEETNGCNEHDVATEDLLVTPDL-VNYSDFNNMSEPVTITGEKQPL 632

Query: 633 IPSSST-----SIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLE 687
           I  +S       I V + W   +L  +    +E   E+     V K A      +  C  
Sbjct: 633 IWPTSLYRGIRGISVTMLWQPNVLTDFCKKDMEE-KELLTKHNVRKGA-----DINECFH 686

Query: 688 AFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVN 747
            F R+E L   ++WYC +CKE + A+KKLDLW+LP VL+IHLKRF ++R  + K++  V 
Sbjct: 687 LFTRQELLSDGNLWYCSRCKEHQHATKKLDLWKLPPVLIIHLKRFHFTRWSREKIDIPVE 746

Query: 748 FPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHI 807
           FP+   +LT  V ++    + +Y+L A++NH GG+G GHY A  +  D+  WY+F+D+ +
Sbjct: 747 FPLTGLDLTSRVVDEKFG-KAVYDLIAVSNHAGGLGGGHYWAWARNGDD--WYDFNDASV 803

Query: 808 S--PINEDDVKSAAAYVLFYRR 827
           S  P   D + S  AYVLFYR+
Sbjct: 804 SAMPQPNDPIVSKEAYVLFYRK 825


>gi|348507904|ref|XP_003441495.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4-like
           [Oreochromis niloticus]
          Length = 997

 Score =  282 bits (722), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 205/615 (33%), Positives = 291/615 (47%), Gaps = 95/615 (15%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G   L             P  IDNS L +D   +       
Sbjct: 58  WFKQWKKYVGFDSWDMYNVGERSL------------YPGPIDNSGLFSDQETQ------A 99

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L SWYG   G   + RKV+  G+      VEVY L L L
Sbjct: 100 LKEHLIDELDYVLVPTEAWNKLVSWYGCLEGQRPIVRKVVEHGMFVKHCKVEVYLLELNL 159

Query: 118 LVMPRGECSTIR-ISKKETIGELHRRACSIFYL-NLEQICIWDYYGHRKHALMNDMDRTL 175
                 +    R  SK +TI  + +   ++F + + E+  +W+ Y    +  +N  D T+
Sbjct: 160 CENDNMDNVVTRHFSKADTIDTIEKEMRTLFNIPSEEETRLWNKYMSNTYEQLNKPDSTV 219

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E   N +GT  + +      +  K+S+    PS++  +     S S 
Sbjct: 220 QDAGLFQGQVLVIE-RKNEDGTWPRQA------SHPKSSTT---PSRNFTTSPKLSSNSS 269

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLG------SSGVTTRGASVGLTGLLNLGNTCFMNS 289
               N  S  S    L ++  S N  G      S       +  GL GL NLGNTCFMNS
Sbjct: 270 PAVTNGDSNCSPGYTLNNSTSSSNRYGGYNSYSSYNYRESQSQPGLCGLSNLGNTCFMNS 329

Query: 290 AIQCLVHTPEFARYFRED-YRREINWQNPLGM---------------------------- 320
           A+QCL +      YF  D Y  EIN +NPLGM                            
Sbjct: 330 ALQCLSNASPLTEYFLTDQYEAEINRENPLGMRGEIAEAYADLVKQMWLSRSSYVAPRTF 389

Query: 321 -------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEY 361
                               ELLAFLLDGLHEDLNRVK KPY+  +DA+GRPDE VA E 
Sbjct: 390 KTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLALRDAEGRPDEIVAKEA 449

Query: 362 WANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFT 421
           W NH  RNDSIIVD+  G +KSTLVCP C+KVSVTFDPF YL+LPL     RTM V +  
Sbjct: 450 WTNHRLRNDSIIVDIFHGLFKSTLVCPECSKVSVTFDPFCYLTLPLPLKKDRTMEVFLVR 509

Query: 422 SDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFL--DDPLI 479
           SD  + P+ Y V VPK G   DL   L  +C +   E + VA++ NH   +    DD   
Sbjct: 510 SDPQSRPTQYRVVVPKLGTITDLCSALSKLCGIP-PENMVVADVYNHRFHKLYRRDD--- 565

Query: 480 SLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRD 539
            L+ I + D +  Y V +   + + L +  R +  +   + T++    +G PL+ ++ R 
Sbjct: 566 GLNQIMEKDDIFVYEVQEENSERMNLPVYFRERHSKHAGSSTSTM--LFGQPLLITVPRH 623

Query: 540 DVISSGKIQSTVQRM 554
           ++I+       ++R+
Sbjct: 624 NLIADVLYDKILERI 638



 Score =  155 bits (392), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 89/196 (45%), Positives = 123/196 (62%), Gaps = 20/196 (10%)

Query: 641 VVYVDW---SQKLL------EKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLR 691
            V +DW   S+KL       E Y  H  E++L+     P  KK     ++L  C+E F  
Sbjct: 784 TVAIDWDTESKKLYYDEPEAEAYEKH--ESMLQ-----PQRKKTT---VALRECIELFTT 833

Query: 692 EEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIH 751
            E L   D WYCP CK+ +QA+KK DLW LP +LV+HLKRFSY+R  + KL+T V+FPI 
Sbjct: 834 METLGEHDPWYCPTCKKHQQATKKFDLWSLPRILVVHLKRFSYNRCWRDKLDTVVDFPIR 893

Query: 752 DFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPIN 811
           D N++++V +  +    +Y+L A++NHYGGMG GHYTA+ K   + +WY FDDS +S   
Sbjct: 894 DLNMSEFVCDPKAG-PYIYDLIAVSNHYGGMGGGHYTAYGKNKVDGKWYYFDDSSVSSAT 952

Query: 812 EDDVKSAAAYVLFYRR 827
           ED + + AAYVLFY+R
Sbjct: 953 EDQIVTKAAYVLFYQR 968


>gi|296422510|ref|XP_002840803.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637027|emb|CAZ84994.1| unnamed protein product [Tuber melanosporum]
          Length = 1176

 Score =  281 bits (720), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 262/937 (27%), Positives = 406/937 (43%), Gaps = 174/937 (18%)

Query: 23  LLEHFNSAGSSASKRPSG-----IDNSDLVN-------------DATAEDPGAGPE---I 61
           LL  F+ +G   +K  +      IDNSDLV+             D+T ED  A PE    
Sbjct: 104 LLAKFSDSGVQLTKEGAEGEIGLIDNSDLVDTTQMQGQAKKTSDDSTVED-SAVPEDFVA 162

Query: 62  VDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQT-ELAVEVYPLRLQL 117
           +   + G D+ +LP+E WN L SWYG   G P + R+ +++  +    +  E+YP     
Sbjct: 163 IKPGILGDDFEILPEEAWNSLVSWYGLAEGSPVITRRAVNTSETNVPHIQYEIYPPTFTF 222

Query: 118 LVMPRGECSTI--------------RISKKETIG--ELHRRACSIFYLNL-EQICIWDYY 160
             + R   + I              RI+  +T G  +L R+   +  ++   +I +W   
Sbjct: 223 YKL-RDPSTNITKDVLDKEKSQSPKRITAGKTDGFQKLLRKVKKLAGVDAARKIRLWRII 281

Query: 161 GHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEP 220
                  +    ++   A +     I++E      G++ +  I +      K     V  
Sbjct: 282 ESSFEHDLEPASKSSRKAGLGAGGTIVIEE----QGSDGEW-ISEKPTKSVKKGGQQVTV 336

Query: 221 SKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLN 280
           + +  +I GG    K ++R  S   STS    +A      L        G  +G  GL N
Sbjct: 337 ALNGKNITGGPVKKKASARPDSPSGSTS----TAVIRSGFLNRPAERRDGRPLGKCGLSN 392

Query: 281 LGNTCFMNSAIQCLVHTPEFARYFR-EDYRREINWQNPL---GMV--------------- 321
           LGNTC+MNSA+QCL    E + YF    Y  E+N  NPL   G V               
Sbjct: 393 LGNTCYMNSALQCLRSVTELSNYFLCNKYMEELNPSNPLSHSGKVAKAYATLLGYIFSPT 452

Query: 322 ------------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDA-- 349
                                         E LAFLLDGLHEDLNR++ KPYI+  ++  
Sbjct: 453 CPVSVSPREFKSTISRFSLSFSGYGQQDTQEFLAFLLDGLHEDLNRIQKKPYIEKPESTD 512

Query: 350 ----DGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
               DG     +A E+W  +  RNDS+I D+  G Y+STLVCP C KVS+TFDPFM L+L
Sbjct: 513 KMVGDGEAIARLAQEHWTIYKRRNDSVIADLFGGLYQSTLVCPDCEKVSITFDPFMDLTL 572

Query: 406 PLQATTTRTMTVTVFTSDGSA-----LPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEEL 460
           PL         +  + S  S      +P    V + K+   + L + L    +L   + +
Sbjct: 573 PLPVENVWGRDIYFYPSSASGGGLIKIP----VEMDKNSSIKSLKEHLARKFNLDPKKTM 628

Query: 461 KVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYR---VPKLVKKAVFLQLIHRLQEQEPG 517
             +E+      +  +D      TI+ DD    Y    VP     +         + ++P 
Sbjct: 629 -ASEVYKGKFFKHYEDFQTVSETIRQDDDAFIYELDDVPTNYPPS---------KSKKPR 678

Query: 518 AAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPF------------LKKESLM 565
                     +G P    ++RD+V S     + V+++++ +                   
Sbjct: 679 RTGFYGPSYVFGLPFFIVVNRDEVRS---FDAIVKKIIAKYQVLTTRNFYESEASPSESE 735

Query: 566 HADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASS-----SKAVTLPN--LPLQLVDESN 618
             +  +    +  ++ + E   +   +++ +DASS      KAV  P   LP  + D   
Sbjct: 736 TEEVVEVKDELEDINETEEETHDGFVDVSMKDASSMVGSDRKAVKSPRRPLPAGIEDLFT 795

Query: 619 VCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKA--- 675
           V       GD             V   W Q L   ++    E L  V    P  +K    
Sbjct: 796 VMATKRRSGDS-----------AVVTGW-QALETAFDIR--ERLNHVQSASPPRRKTSDY 841

Query: 676 -----RTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLK 730
                + + + L  CL+ F +EE L  ED W+CP+CK  R+ASKK +LW+ P++LVIHLK
Sbjct: 842 FTNERKRKGIHLEDCLDEFAKEEVLSEEDPWFCPRCKVHRRASKKFELWKCPDILVIHLK 901

Query: 731 RFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAH 790
           RFS SR+ + K++  ++ P+   +L + V  K   +  +Y+L A+ NHYGG+G GHYTA 
Sbjct: 902 RFSSSRNFRDKIDVLIDCPVTGLDLQERVGLKEEGKSLVYDLIAVDNHYGGLGGGHYTAC 961

Query: 791 IKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            K   + +WY++DDS +  + E  V ++AAY+LFYRR
Sbjct: 962 AKSWIDGKWYHYDDSSVKEVGEQKVITSAAYLLFYRR 998


>gi|348678876|gb|EGZ18693.1| hypothetical protein PHYSODRAFT_503684 [Phytophthora sojae]
          Length = 1124

 Score =  276 bits (705), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 208/676 (30%), Positives = 307/676 (45%), Gaps = 139/676 (20%)

Query: 262  GSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED--------YRREIN 313
            GS     R    G+ GL NLGNTCFMNS +QCL++T     YF E         + +EIN
Sbjct: 474  GSEAGKGRPTFEGVVGLRNLGNTCFMNSMLQCLINTAPLRDYFLEKDPETGSPFFTKEIN 533

Query: 314  WQNPLGMV-----------------------------------------------ELLAF 326
              NPLGM                                                EL+ F
Sbjct: 534  RHNPLGMKGIMAVEFASLLRKIWSGEFTAVAPTSLKSVIGQYAPQFAGYQQQDSQELMNF 593

Query: 327  LLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLV 386
            LLDGLHEDLNRVK KPY K  + +GR D EVA E W   + RN+SIIVD   GQ +S + 
Sbjct: 594  LLDGLHEDLNRVKTKPYTKPVERNGREDPEVAQEEWQQFVRRNNSIIVDNFMGQLRSHVT 653

Query: 387  C--PVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRC--R 442
            C  P C   S+TFDP+M LS+P+    T T+ V +F ++G  +P  Y + +PK   C  +
Sbjct: 654  CSNPDCGNESITFDPYMNLSVPIPNKETVTVQVQLFWANGD-IPMKYALHLPKEDMCTLQ 712

Query: 443  DLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDD-------------------PLI--SL 481
            D  + L  + S+  +    V E+ NH I +   D                   PL   S 
Sbjct: 713  DAKEKLSQLSSVPVAWIFFV-EVWNHRILKAYSDRMHVDRLRDGVLHAYELELPLTDYSF 771

Query: 482  STIKDDDHLAAYRVPKL------VKKAVFLQLIHR------------------LQEQEPG 517
            S+       A  R+  L       K+   ++L+H+                  L E+  G
Sbjct: 772  SSPTIRPPTAGRRLGTLETESEPAKQMHLVELLHQAPVASPVDGRNNSEGYDMLVEEGYG 831

Query: 518  AAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVT 577
              Q   + + + TPL+ SI R    S  +I   V +++        L+     D  S  T
Sbjct: 832  PKQRRVEVELFNTPLLVSIDRK--WSKARIHKKVWQIV------HRLVATKDADKDSR-T 882

Query: 578  TVDPSGEAHSNSSSNIAKEDASSSKAVTLP--NLPLQLVDESNVCFDLSVEGDKTIRIPS 635
                  +       ++ + +  ++    LP  + P+ + D SN  F  ++E ++      
Sbjct: 883  EFGCGQDQQLPYRLHVTEPNGGTTFISDLPRDDEPVDVPDSSNKPFSFTLEWNRN----- 937

Query: 636  SSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPL 695
                      + +K  ++ + H      +  KN  ++ KA  EP++L  CL  F   E L
Sbjct: 938  -----GYQRGYDEKSAKRIDLH------DSMKNLKISSKA--EPITLLNCLTKFTEREQL 984

Query: 696  VPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRS----MKHKLETFVNFPIH 751
               D WYCP+CK+  +A KK DL+ LP+VL+ HLKRF Y+++     + K+ T V FPI 
Sbjct: 985  GEADTWYCPKCKDHVRAFKKFDLFSLPKVLIFHLKRFRYAQNSFYMHRDKISTLVEFPIE 1044

Query: 752  DFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPIN 811
              +L+++V    +    +Y+L+A++ H GG+G GHYTA  K      W+NF+DSH S  +
Sbjct: 1045 GLDLSEFVIGPQNGSEPIYDLFAVSEHMGGLGGGHYTAVAKNPVNECWFNFNDSHTSEAS 1104

Query: 812  EDDVKSAAAYVLFYRR 827
             +D  S+ AYVLFY R
Sbjct: 1105 AEDAVSSRAYVLFYIR 1120



 Score = 46.2 bits (108), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 1/54 (1%)

Query: 65  LLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLL 118
           L+EG+DY L+ Q VWNQL   +G    +AR V++ G ++T + VEV P+  ++L
Sbjct: 105 LVEGKDYRLVSQRVWNQLSDQFGFDWEIARPVVARGPAKTRV-VEVNPVAFEVL 157


>gi|326668740|ref|XP_002662556.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 isoform 1 [Danio
           rerio]
          Length = 1009

 Score =  275 bits (702), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 211/626 (33%), Positives = 297/626 (47%), Gaps = 113/626 (18%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 57  WFKQWKKYVGFD----SWDLYNVGEH--------NLYPGPIDNSGLFSDRKSQ------S 98

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L SWYG       + RKV+  G+      VEVY L L L
Sbjct: 99  LKEHLIDELDYVLVPTEAWNKLVSWYGSLGNQKPIIRKVVEHGMFVKHCKVEVYLLELNL 158

Query: 118 LVMPRGECSTIR-ISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                 +    R  SK +TI  + +   S+F +  E +  +W+ Y    +  +N +D T+
Sbjct: 159 CENDNMDKVVTRHFSKADTIDTIEKEMRSLFDIPSEKETRLWNKYMSNTYEQLNKLDSTV 218

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS- 234
            DA +   Q +++E   N +GT  + S                  SKSS S +  ++ S 
Sbjct: 219 QDAGLFQGQVLVIEK-KNEDGTWPRQSCH----------------SKSSTSTSRNYTTSP 261

Query: 235 KGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTR----------------GASVGLTGL 278
           K +S + ++  ST  N  S  +S   L +S    R                 A  GL GL
Sbjct: 262 KPSSNSSATISSTITNGDSNSNSGYMLNNSTSGNRLGSYNSYSSSYSYRESAAQPGLCGL 321

Query: 279 LNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM----------------- 320
            NLGNTCFMNSA+QCL +TP    YF ED Y  EIN +NPLGM                 
Sbjct: 322 SNLGNTCFMNSALQCLSNTPPLTEYFLEDRYEAEINRENPLGMRGEIAEAYADLVKQMWL 381

Query: 321 ------------------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDAD 350
                                          ELLAFLLDGLHEDLNRVK KPY+  +DA+
Sbjct: 382 SRSSYVAPRTFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLALRDAE 441

Query: 351 GRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQAT 410
           GRPDE VA E WANH  RNDSIIVD+  G +KSTLVCP C+KVSVTFDPF YL+LPL   
Sbjct: 442 GRPDEIVAKEAWANHRLRNDSIIVDIFHGLFKSTLVCPECSKVSVTFDPFCYLTLPLPMK 501

Query: 411 TTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSI 470
             RTM V +  +D       + V VPK G   DL   L  +  +  SE + VA++ NH  
Sbjct: 502 KDRTMEVYLVRTDPQFRAMQFRVVVPKMGAVADLCSALAKLSGVP-SENMVVADVYNHRF 560

Query: 471 QRFL--DDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAY 528
            +    DD    L+ I + D +  Y V  L + +  + L    +E+    +  +S    +
Sbjct: 561 HKIYKRDD---GLNQIMEKDDIFVYEV--LEEDSERMNLPVYFRERHAKHSGGSSGTMLF 615

Query: 529 GTPLVSSISRDDVISSGKIQSTVQRM 554
           G PL+ ++ R ++      +  ++R+
Sbjct: 616 GQPLLITVPRLNLTVDTLYERVLERI 641



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 88/200 (44%), Positives = 125/200 (62%), Gaps = 20/200 (10%)

Query: 637 STSIVVYVDW---SQKLL------EKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLE 687
           +T   V +DW   +++L       E Y+ H  E++L         KK  T  ++L  C+E
Sbjct: 792 TTHSTVAIDWDSDTKRLCYDDQEAEAYDKH--ESMLHA------QKKKTT--VALRECIE 841

Query: 688 AFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVN 747
            F   E L   D WYCP CK+ +QA+KK DLW LP +LV+HLKRFSY+R  + KL+T V+
Sbjct: 842 LFTTMETLGEHDPWYCPTCKKHQQATKKFDLWSLPRILVVHLKRFSYNRCWRDKLDTVVD 901

Query: 748 FPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHI 807
           FPI D N++++V +  +    +Y+L A++NHYGGMG GHYTA+ K   + +WY FDDS +
Sbjct: 902 FPIRDLNMSEFVCDPKAD-PYIYDLIAVSNHYGGMGGGHYTAYGKNKADGKWYYFDDSSV 960

Query: 808 SPINEDDVKSAAAYVLFYRR 827
           S   ED + + AAYVLFY+R
Sbjct: 961 SAATEDQIVTKAAYVLFYQR 980


>gi|348678861|gb|EGZ18678.1| hypothetical protein PHYSODRAFT_346365 [Phytophthora sojae]
          Length = 1168

 Score =  274 bits (700), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 207/676 (30%), Positives = 306/676 (45%), Gaps = 139/676 (20%)

Query: 262  GSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED--------YRREIN 313
            GS     R    G+ GL NLGNTCFMNS +QCL++T     YF E         + +EIN
Sbjct: 518  GSEAGKGRPTFEGVVGLRNLGNTCFMNSMLQCLINTAPLRDYFLEKDPETGSPFFTKEIN 577

Query: 314  WQNPLGMV-----------------------------------------------ELLAF 326
              NPLGM                                                EL+ F
Sbjct: 578  RHNPLGMKGIMAVEFASLLRKIWSGEFTVVAPTSLKSVIGQYAPQFAGYQQQDSQELMNF 637

Query: 327  LLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLV 386
            LLDGLHEDLNRVK KPY K  + +GR D EVA E W   + RN+SIIVD   GQ +S + 
Sbjct: 638  LLDGLHEDLNRVKTKPYTKPVERNGREDPEVAQEEWQQFVRRNNSIIVDNFMGQLRSHVT 697

Query: 387  C--PVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRC--R 442
            C  P C   S+TFDP+M LS+P+    T T+ V +F ++G  +P  Y + +PK   C  +
Sbjct: 698  CSNPDCGNESITFDPYMNLSVPIPNKETVTVQVQLFWANGD-IPMKYALHLPKEDMCTLQ 756

Query: 443  DLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDD-------------------PLI--SL 481
            D  + L  + S+  +    V E+ NH I +   D                   PL   S 
Sbjct: 757  DAKEKLSQLSSVPVAWIFFV-EVWNHRILKAYSDRMHVDRLRDGVLHAYELELPLTDYSF 815

Query: 482  STIKDDDHLAAYRVPKL------VKKAVFLQLIHR------------------LQEQEPG 517
            S+       A  R+  L       K+   ++L+H+                  L E+  G
Sbjct: 816  SSPTIRPPTAGRRLGTLETESEPAKQMHLVELLHQAPVASPVDGRNNSEGYDMLVEEGYG 875

Query: 518  AAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVT 577
              Q   + + + TPL+ SI R    S  +I   V + +        L+     D  S  T
Sbjct: 876  PKQRRVEVELFNTPLLVSIDRK--WSKARIHKKVWQFV------HRLVATKDADKDSR-T 926

Query: 578  TVDPSGEAHSNSSSNIAKEDASSSKAVTLP--NLPLQLVDESNVCFDLSVEGDKTIRIPS 635
                  +       ++ + +  ++    LP  + P+ + D SN  F  ++E ++      
Sbjct: 927  EFGCGQDQQLPYRLHVTEPNGGTTFISDLPRDDEPVDVPDSSNKPFSFTLEWNRN----- 981

Query: 636  SSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPL 695
                      + +K  ++ + H      +  KN  ++ KA  EP++L  CL  F   E L
Sbjct: 982  -----GYQRGYDEKSAKRIDLH------DSMKNLKISSKA--EPITLLNCLTKFTEREQL 1028

Query: 696  VPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRS----MKHKLETFVNFPIH 751
               D WYCP+CK+  +A KK DL+ LP+VL+ HLKRF Y+++     + K+ T V FP+ 
Sbjct: 1029 GEADTWYCPKCKDHVRAFKKFDLFSLPKVLIFHLKRFRYAQNSFYMHRDKISTLVEFPVE 1088

Query: 752  DFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPIN 811
              +L+++V    +    +Y+L+A++ H GG+G GHYTA  K      W+NF+DSH S  +
Sbjct: 1089 GLDLSEFVIGPQNGSEPIYDLFAVSEHMGGLGGGHYTAVAKNPVNECWFNFNDSHTSEAS 1148

Query: 812  EDDVKSAAAYVLFYRR 827
             +D  S+ AYVLFY R
Sbjct: 1149 AEDAVSSRAYVLFYIR 1164


>gi|432857080|ref|XP_004068528.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4-like [Oryzias
           latipes]
          Length = 998

 Score =  273 bits (699), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 216/665 (32%), Positives = 308/665 (46%), Gaps = 120/665 (18%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G   L             P  IDNS L +D   +       
Sbjct: 58  WFKQWKKYVGFDSWDMYNVGERSL------------YPGPIDNSGLFSDQETQ------A 99

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L SWYG   G   + RKV+  G+      VEVY L L L
Sbjct: 100 LKEHLIDELDYVLVPTEAWNKLVSWYGCLEGQRPIVRKVVEHGMFVKHCKVEVYLLELNL 159

Query: 118 LVMPRGECSTIR-ISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                 +    R  SK +TI  + +   ++F +  E +  +W+ Y    +  +N  D T+
Sbjct: 160 CENDNMDNVVTRHFSKADTIDTIEKEMRTLFEIPSEKETRLWNKYMSNTYEQLNKPDSTV 219

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E  +            ++G   ++AS       KSS + +  +S S 
Sbjct: 220 QDAGLFQGQVLVIERRN------------EDGTWPRQASH-----PKSSTTPSRNFSTSP 262

Query: 236 G-----------TSRNHSSEISTSPNLASARDSDNT-LGSSGVTTRG------ASVGLTG 277
                       T+ N  S  S    L ++  S +  LGS             A  GL G
Sbjct: 263 KLSSNSSMSISPTATNGDSSCSPGYTLNNSSTSSSNRLGSYNSYNSYSYRESQAQPGLCG 322

Query: 278 LLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM---------------- 320
           L NLGNTCFMNSA+QCL + P    YF +D Y  EIN +NPLGM                
Sbjct: 323 LSNLGNTCFMNSALQCLSNAPPLTEYFLDDQYEAEINRENPLGMRGEIAEAYADLVKQMW 382

Query: 321 -------------------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDA 349
                                           ELLAFLLDGLHEDLNRVK KPY+  +DA
Sbjct: 383 LSRSSYVAPRTFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLALRDA 442

Query: 350 DGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQA 409
           +GR DE VA E W NH  RNDS+IVD+  G +KSTLVCPVC+KVSVTFDPF YL+LPL  
Sbjct: 443 EGREDEIVAKEAWKNHRLRNDSVIVDIFHGLFKSTLVCPVCSKVSVTFDPFCYLTLPLPM 502

Query: 410 TTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHS 469
              RTM V +  SD  + P+ Y   VPK G   DL   L  +C +   E + VA++ NH 
Sbjct: 503 KKDRTMEVFLVRSDPQSKPTQYRAVVPKLGTVADLCSALSKLCGIP-PENMVVADVYNHR 561

Query: 470 IQRFL--DDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKA 527
             +    DD    L+ I + D +  Y V +  + +  + L   L+E++   A ++S    
Sbjct: 562 FHKIYRRDD---GLNQIMEKDDIFVYEVQE--EDSERMNLPVYLRERQSKHAASSSSTLL 616

Query: 528 YGTPLVSSISRDDVISS---GKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGE 584
           +G PL+ ++ R ++ +     KI   + R + P     S   A +   S+ VT  + + E
Sbjct: 617 FGQPLLITVPRHNLTADVLYDKILERIGRYVKPSQSPNSESKASA---SATVTNCNQAPE 673

Query: 585 AHSNS 589
           + + S
Sbjct: 674 SSTAS 678



 Score =  156 bits (395), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 94/214 (43%), Positives = 131/214 (61%), Gaps = 24/214 (11%)

Query: 623 LSVEGDKTIRIPSSSTSIVVYVDW---SQKLL------EKYNTHFLENLLEVFKNGPVTK 673
           L  EG+     P S+ +I    DW   S+KL       E Y  H  E++L+     P  K
Sbjct: 771 LPCEGNVLKLNPHSTIAI----DWDTESKKLFYDEQEAEAYEKH--ESMLQ-----PQKK 819

Query: 674 KARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFS 733
           K     ++L  C+E F   E L   D WYCP CK+ +QA+KK DLW LP +LV+HLKRFS
Sbjct: 820 KTT---VALRDCIELFTTMETLGEHDPWYCPTCKKHQQATKKFDLWSLPRILVVHLKRFS 876

Query: 734 YSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKL 793
           Y+R  + KL+T V+FPI D N++++V +  +S   +Y+L A++NHYGGMG GHYTA+ K 
Sbjct: 877 YNRCWRDKLDTVVDFPIRDLNMSEFVCDPKAS-PYIYDLIAVSNHYGGMGGGHYTAYAKN 935

Query: 794 LDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             + +WY FDDS +S   +D + + AAYVLFY+R
Sbjct: 936 KLDGKWYYFDDSSVSSATDDQIVTKAAYVLFYQR 969


>gi|260820838|ref|XP_002605741.1| hypothetical protein BRAFLDRAFT_121867 [Branchiostoma floridae]
 gi|229291076|gb|EEN61751.1| hypothetical protein BRAFLDRAFT_121867 [Branchiostoma floridae]
          Length = 1785

 Score =  273 bits (698), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 235/837 (28%), Positives = 359/837 (42%), Gaps = 171/837 (20%)

Query: 36   KRPSGIDNSDLVNDATAE-----DPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGP 90
            + P  IDN+ L+   T +     + G   +    L+ GRDY LLP+ VW  L +WYGG P
Sbjct: 662  QNPGAIDNTPLIIPETRKVMMLTNEGGRLKRDRILIRGRDYELLPEPVWRALQNWYGGSP 721

Query: 91   TLARKVISSGLSQTELAVEVYPLRLQLL-------------------------------V 119
             L R VI          +E+YPL ++LL                                
Sbjct: 722  ALPRTVIIPSHGDPSAELELYPLSIRLLRHQAPQTRAGAPGVQLGGFHFGPGGITGPMNT 781

Query: 120  MPRGECSTI-RISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDA 178
             PR   + +   S+  T+  +++  C+   +  + + +W++       L+ + D TL+  
Sbjct: 782  TPRRYLAYVAAFSRMTTLKLMYQYLCNRLRIREDDMRLWNFKEESNAYLLEEEDHTLEML 841

Query: 179  NIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTS 238
             I  +Q IL+EV +           +D  + E                            
Sbjct: 842  GIDDNQQILIEVRN-----------KDMSWPE---------------------------- 862

Query: 239  RNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTP 298
                 E+S+  N  +  +        G          TGL NLGNTCFMNS +QC+ +T 
Sbjct: 863  -----EMSSLANQKNRMEKKQAAAEKGA---------TGLSNLGNTCFMNSGLQCISNTH 908

Query: 299  EFARYF---REDYRREINWQNPLGMV---------------------------------- 321
                YF   R  Y  E+N  NPLGM                                   
Sbjct: 909  ALTEYFISGRHLY--ELNTINPLGMKGHIARRYGDLVQDLWSGTSKTIAPLKMRWTIAKY 966

Query: 322  -------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIAR 368
                         ELLAFLLDGLHEDLNRV  KPY++ KD+DGR DEEVA E W NH+ R
Sbjct: 967  APRFNGFQQHDSQELLAFLLDGLHEDLNRVHEKPYVELKDSDGRADEEVAKEAWDNHLMR 1026

Query: 369  NDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALP 428
            N SI+VD+  GQ KS + C  C  V+V FDPF ++SLPL       + VTV   DGS +P
Sbjct: 1027 NRSIVVDLFHGQLKSQVRCLHCTHVNVRFDPFNFMSLPLPMDNAMYVEVTVMKLDGS-VP 1085

Query: 429  STYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDD 488
              Y + +    +   L + LG +C +  S +L + E    +I+ F  D     S +  + 
Sbjct: 1086 VRYGLRLNADEKNLVLKKHLGELCDIDVS-QLLLLETFGATIKSFPSDGQRVRSVLGGN- 1143

Query: 489  HLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQT--TSQWKAYGTPLVSSIS-RDDVISSG 545
             L AY +P +   ++        +E E   A+T  TS+ +  GT +      R DV    
Sbjct: 1144 -LFAYEIPAVQDSSM-------EEENEGKVAETSETSKPQCNGTVMTGEEPIRMDVYFLS 1195

Query: 546  KIQSTVQRMLSPFL-------KKESLMHADSFDPSSMVTTVDPSGEAHSNSSSN----IA 594
              +S      +P +        ++ L  A     S +V+ + PS    SN + +    + 
Sbjct: 1196 SQKSRPSLFGTPLILPCGVSSLQQDLYQAIWTQVSRLVSPLPPSEGGRSNHAQDCDDSLG 1255

Query: 595  KEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKY 654
             E     KAV    +          C    ++  +      SS    V +DW    L   
Sbjct: 1256 YEYPFVLKAVQRDGITCAWCPWYRFCRGCVIDCTEEEFAMGSS---YVAIDWDPTALHLR 1312

Query: 655  NTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASK 714
                 E + E  ++   +++A++EP+ L TCL+AF +EE L  E+ WYC +C+E + A+K
Sbjct: 1313 YQESQEKVFEEHESVAASRRAQSEPIDLDTCLKAFTKEEELGEEERWYCSKCQEHQLAAK 1372

Query: 715  KLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSR-RQLY 770
            KLD+WRLP +L++H+KRF +      K    V FP+ +F+ + ++  ++  + R+LY
Sbjct: 1373 KLDIWRLPPILIVHMKRFQFLNGRWCKSHKIVKFPMKNFDPSPFLVPRDPQKIRELY 1429



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 38/58 (65%), Gaps = 1/58 (1%)

Query: 770  YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            Y+L+A++ H G +G GHY ++ K  +  +WY ++DS    ++ D + + +AY+LFY R
Sbjct: 1692 YDLFAISCHTGILGGGHYVSYAKNPN-GKWYCYNDSSCKEVHPDQIDTDSAYMLFYER 1748


>gi|358333828|dbj|GAA52307.1| ubiquitin carboxyl-terminal hydrolase 4/11/15 [Clonorchis sinensis]
          Length = 883

 Score =  271 bits (693), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 263/899 (29%), Positives = 388/899 (43%), Gaps = 197/899 (21%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           WW  W  +          D  +  E+ + A       P+ I+N++L+        G   +
Sbjct: 48  WWNKWCAFT---------DAVAKGENLDLA---CDDYPAEINNTNLL--------GTNGK 87

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQT---ELAVEVYPLRLQL 117
           +   LL  +D  L+P EVW+ L ++YG   T    V      QT      VE+YP     
Sbjct: 88  LKPDLLREQDITLIPGEVWDLLVNYYGCVHT-DTSVFKRTAVQTPSGRWVVEIYPPCFSF 146

Query: 118 LVMPRGECS-TIRISKKETIGELHRRACSIFYLNLE-------QICIWDYYGHRKHALMN 169
           + +       T   S+ +TIG L     +I  L L+       ++ I D  G     L +
Sbjct: 147 IELGSQNTRFTGTYSESQTIGHLK----NIVRLTLKLDPNTNVRLFIQD--GLLCDELTD 200

Query: 170 DMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAG 229
           D   T+ +A+++  Q ++   L+ +NG         N     +  + +  PS+      G
Sbjct: 201 D-SMTIGEASLER-QKVIYFKLEVINGPKA------NELGGSRLGNNVSSPSQYGF---G 249

Query: 230 GWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNS 289
            W                 P L        T GS  +       G+ GL NLGNTCFMNS
Sbjct: 250 NWL----------------PQL--------TNGSKQLR------GVCGLSNLGNTCFMNS 279

Query: 290 AIQCLVHTPEFARYFREDYRREINWQNPLGMV---------------------------- 321
           AIQCL + P+  RYF  +++ +IN  NPLG                              
Sbjct: 280 AIQCLSNVPDLTRYFLGNWKVDINKYNPLGTQGRIATAYAELIGRMWSGLYSYDVPRTLK 339

Query: 322 -------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYW 362
                              ELL FLLDGLHEDLN+V  KPYI+ KDA  RPDE VA E W
Sbjct: 340 REIAAIANQFYGYAQHDSHELLMFLLDGLHEDLNKVIDKPYIQYKDAGDRPDEVVATEAW 399

Query: 363 ANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTT--RTMTVTVF 420
            NH ARNDS+IVD   GQ KST+VCP CN+ SVTFDPF  LSLPL   +T  R + V  +
Sbjct: 400 GNHKARNDSVIVDYFHGQLKSTVVCPDCNERSVTFDPFASLSLPLSEVSTFLRVVHVWPW 459

Query: 421 TSDGS--ALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPL 478
             D    A P  Y V V      RDLI  L         EEL+    ++  +      P+
Sbjct: 460 VCDDRQHAGPIRYEVMVSAEFFVRDLITSL---------EELR-PHHKDCQMNYQYGAPI 509

Query: 479 ISLS-----TIKDDDHLAAYR-VPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPL 532
            +        I    H + Y+ +   V    ++ +        P   Q T ++      L
Sbjct: 510 FAFELPPGRLIPVQFHQSNYQNISGWVGLPFYISI-------PPDMLQPTDEY------L 556

Query: 533 VSSISRDDVISSGKIQS--TVQRMLSPFLKK--ESLMHADSFDPSSMVTTVDPSGEAHSN 588
           + SI+         +Q   TV  +  P   K  + L  + S+DP       DP GE   +
Sbjct: 557 IRSIASRLRAIGIDLQDTFTVNHVQRPANHKSGDRLTGSSSYDPVESEPD-DPMGENDDS 615

Query: 589 SSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQ 648
               +          + L +   Q VD  +  FD S+      ++      + V V W+ 
Sbjct: 616 VCGFLQGR-------IHLTDERNQEVDAISDRFDYSL-----FKVRVDCNGVEVPVQWNY 663

Query: 649 KLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKE 708
           + ++   +   ++LL+      V +  RTE LS                 ++WYC +CK+
Sbjct: 664 QTVQFKCSKAKDSLLDC-----VRRFIRTEKLS---------------ARNLWYCSRCKK 703

Query: 709 RRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQ 768
            +QA+KK DLW LP+VL+I LKRF  +   + K+++FV FP+   +LT +V  +++  + 
Sbjct: 704 EKQATKKFDLWSLPKVLIIQLKRFRSTFRSRDKIDSFVEFPVKGLDLTPWVL-RDTKEQF 762

Query: 769 LYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           +Y+L  ++NH G +G GHYTA+        WY FDD+    ++E  + S+A YVL YRR
Sbjct: 763 IYDLLGVSNHMGYLGGGHYTAYALNEPTQTWYLFDDASTRKVDESHIVSSAGYVLVYRR 821


>gi|340501597|gb|EGR28359.1| ubiquitin carboxyl-terminal hydrolase family protein, putative
           [Ichthyophthirius multifiliis]
          Length = 916

 Score =  271 bits (692), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 188/636 (29%), Positives = 310/636 (48%), Gaps = 116/636 (18%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARY-FREDYRREINWQNPLGM------------ 320
           GL GL N+GNTCFMNS++QCL +  E   Y    +Y+ +IN  NPLG             
Sbjct: 310 GLCGLQNIGNTCFMNSSLQCLSNIQELTNYMLLNNYQLDINSTNPLGTGGQLVNAYSELI 369

Query: 321 ----------------------------------VELLAFLLDGLHEDLNRVKHKPYIKS 346
                                              ELL++L+DGLHEDLN++K KP+++ 
Sbjct: 370 KNMWNGQNTTSPFNLKKILSKFAPQFLGYSQQDSQELLSYLIDGLHEDLNKIKQKPFVQQ 429

Query: 347 KDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLP 406
            ++DG+ DEE +++ W N++ RN SIIVD+  GQ+KSTL CP C K+SVTFDPFM LS+P
Sbjct: 430 IESDGKNDEETSNQAWQNYLKRNKSIIVDLMVGQFKSTLNCPTCKKISVTFDPFMSLSVP 489

Query: 407 LQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQ 466
           +     + + + ++    + LP    + V      ++ I+ L NI   K   ++ ++E Q
Sbjct: 490 V--PYIQYINLNIYYISFNKLPQQIILKV------QNKIETLQNILE-KIQRKITISEKQ 540

Query: 467 NHSIQRFLDDPLISLSTIKDDDHLAAYR-VPKLVKKAVFLQLIHRLQEQEPGAAQTTSQW 525
                       + L +I +D  +  ++ + + + K     L+  +QE++  A   +   
Sbjct: 541 ------------LILYSINNDKQILHFQSLNEKIYKFSSQNLLFLVQEKK-NAIFDSDLD 587

Query: 526 KAYGTPLVSSISRDDVISSGKIQSTVQRMLSP----FLKKESLMHADSFDPSSMVTTVDP 581
           +      +  I +  +I   +  +  Q M++     ++ K S  + D       +  +  
Sbjct: 588 QNIQEEFIQEI-KLQIIDQFRTNNQQQNMITFERFFYINKNSSSYKDLHYKVWRIFRLYM 646

Query: 582 SGEAHSNSSSNIAKEDASSSKAV-----------TLPNLPLQLV-DESN---VCFDLSVE 626
             +  SN+  NI   + ++ + +              N P QL  D+ N   +  DL + 
Sbjct: 647 HSQLESNNHINIINLEKNTLQQLHEEFQHFFSIENEQNHPYQLFFDQKNPIQITEDLKLI 706

Query: 627 GDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLL-EVFKNGPVTKKARTE----PLS 681
            D   +  + S +I +    S           L+NLL + ++N    KK   E      S
Sbjct: 707 QDPIFKGQNKSKTIYLIPQES-----------LQNLLFDKYENFNSQKKEEQESQQKQTS 755

Query: 682 LYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFS-------- 733
           LY CL  F++EE L   + WYC  CK+ +QASKK++++++P++++ H KRF         
Sbjct: 756 LYDCLNLFVKEEILQQGNEWYCNICKQHKQASKKMEIYKIPKIIIFHFKRFKMNKLSSIG 815

Query: 734 --YSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHI 791
             Y  S   KL+ F++FPI + NL  YV +     + LY+L+A+ NH G +  GHYTA  
Sbjct: 816 SFYYASGGQKLDEFIDFPIQNLNLGNYVLSNLKKDKILYDLFAVCNHIGSVNGGHYTAFA 875

Query: 792 KLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           K     +WY+F+DS++  I+ D + ++AAY+LFYRR
Sbjct: 876 KNFLNQKWYDFNDSNVQAISNDKIVTSAAYLLFYRR 911


>gi|213409127|ref|XP_002175334.1| ubiquitin C-terminal hydrolase Ubp1 [Schizosaccharomyces japonicus
           yFS275]
 gi|212003381|gb|EEB09041.1| ubiquitin C-terminal hydrolase Ubp1 [Schizosaccharomyces japonicus
           yFS275]
          Length = 851

 Score =  270 bits (689), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 247/890 (27%), Positives = 375/890 (42%), Gaps = 200/890 (22%)

Query: 32  SSASKRPSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYG-GGP 90
           S  + RP  ID   LV+D           ++  L E  DY ++  ++W  L S +G  GP
Sbjct: 64  SENATRPGSIDQRPLVSDDNT--------LLSGLEEMIDYSIVSPKLWASLVSEFGLIGP 115

Query: 91  TLARKVISSGL-SQTELAVEVYPLRLQLLVMPRG------------------ECSTIRIS 131
            L R V+S G  SQ E  ++VYP   QL ++                     E    R S
Sbjct: 116 ALERNVLSIGSPSQREPFLDVYPPHFQLTILLNEDTQSASMYSAFPIRDGTLEAQMFRFS 175

Query: 132 KKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191
           +  T+ E+      +  L   +  +W  Y ++ + +   +  +LD+    +    +  + 
Sbjct: 176 EASTVQEMEETVSDLLKLERGKFRLW--YANQNYPIPPTI--SLDEF---LKLGFMTLLS 228

Query: 192 DNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNL 251
           D++N  +      D G        ++VE     L   G W                  NL
Sbjct: 229 DDMNSMSLYELNIDRGL-------LVVE----LLCADGIWPT----------------NL 261

Query: 252 ASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRR 310
              +           TT    VG+ GL NLGNTC+MNSAIQC+ HT E   YF   +Y +
Sbjct: 262 VLPKQ----------TTSEGLVGIGGLYNLGNTCYMNSAIQCMFHTRELTGYFITNEYEK 311

Query: 311 EINWQNPLGM------------------------------------------------VE 322
           ++N+ NPLGM                                                 E
Sbjct: 312 DVNYTNPLGMNGKVALSYASLVKQMNQQKPGSAIAPSSFKRIIGEFNTSFLGFSQQDSQE 371

Query: 323 LLAFLLDGLHEDLNRVKHKPYIKSKDA---DGRPDEEVADEYWANHIARNDSIIVDVCQG 379
            +AF LDGLHEDLNRV+ KPY++  D    + +  E+VA++ W  +  RNDSI+V + QG
Sbjct: 372 FIAFFLDGLHEDLNRVRKKPYVERPDLFEDNQQKVEQVANQCWEAYKKRNDSIVVSLFQG 431

Query: 380 QYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHG 439
            YKSTL C  C ++S+ FDPFMYL+LPL         +T      +  P   T+      
Sbjct: 432 MYKSTLKCQQCQQISIVFDPFMYLTLPLPCEKRWKKCLTFMPDTPNQKPVALTLE----- 486

Query: 440 RCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAY---RVP 496
                + +  +I  +K     K++E+  +       D L+S        H   Y   ++ 
Sbjct: 487 -----LDMDASISDMKNEVITKLSEMSIYV------DTLLSCDIYWGKVHRIHYDHQKIR 535

Query: 497 KLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLS 556
           K + K+  + L            Q       Y  P++S+ +RDD+  + + +      L 
Sbjct: 536 KAISKSDNIVLY----------GQKCCGDIVYA-PVISASARDDICGAYQYRDAFGMPLQ 584

Query: 557 PFLK---------KESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLP 607
             L          +ES++ A        V   D S  A+ +  SN A E  + ++   L 
Sbjct: 585 IQLPIGWVKQETIRESIISAYYATTGVGVGNNDFSILAYQSLKSNNAWEKTAETEVQKL- 643

Query: 608 NLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFK 667
                ++DE  V  D                  V   +W + L +K    F    + ++ 
Sbjct: 644 ----TVLDEELVHVD---------------AGTVFVAEWDEALKDK---CFARGKMWIYG 681

Query: 668 NGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVI 727
                + + TE ++L  C+  F + E L  +D WYCP CK+ R A+K +++W+LP++LVI
Sbjct: 682 Q---QQPSTTETVTLNDCMREFSKPEKLSAKDAWYCPNCKDFRPATKTMEIWKLPKILVI 738

Query: 728 HLKRFSYSRSMKH-KLETFVNFPIHDFNLTKYVAN------KNSSRRQL----YELYALT 776
           HL RFS  +S +  K    V FPI    L++   N      K+S R +     Y LYA+ 
Sbjct: 739 HLNRFSCRKSWRRGKRNDLVTFPIEGLKLSEGSQNEWSTGTKDSFRPETCTKKYNLYAVD 798

Query: 777 NHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYR 826
           NHYG M SGHYTA  K     ++Y+FDD+    I EDD+ S AAYVLFY 
Sbjct: 799 NHYGYMSSGHYTAFAKDFVSKKFYHFDDASQQLITEDDLVSPAAYVLFYE 848


>gi|60360166|dbj|BAD90302.1| mKIAA4155 protein [Mus musculus]
          Length = 747

 Score =  269 bits (688), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 203/621 (32%), Positives = 293/621 (47%), Gaps = 88/621 (14%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 54  WFKQWKKYVGFD----SWDMYNVGEH--------NLFPGPIDNSGLFSDPESQ------T 95

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 96  LKEHLIDELDYVLVPAEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 155

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T
Sbjct: 156 CENSDPTNVLSC-HFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNT 214

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQD-NGFAEKKASSVLVEPSKSSLSIAGGWSA 233
           + DA +   Q +++E   N +GT  + S+Q  +  A  +  +   +PS S          
Sbjct: 215 IQDAGLYQGQVLVIEP-QNEDGTWPRQSLQSKSSTAPSRNFTTSSKPSASPYCSVSASLI 273

Query: 234 SKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQC 293
           + G S N SS + +S           +       +     GL GL NLGNTCFMNSA+QC
Sbjct: 274 ANGDSTN-SSGMHSSGVSRGGSGFSASYNCQEPPSPHIQPGLCGLGNLGNTCFMNSALQC 332

Query: 294 LVHTPEFARYF-REDYRREINWQNPLGMV------------------------------- 321
           L +T     YF +++Y  EIN  NPLGM                                
Sbjct: 333 LSNTAPLTEYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDTHVAPRMFKTQV 392

Query: 322 ----------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANH 365
                           ELLAF+LDGLHEDLNRVK KPY++ KDA+GRPD  VA E W NH
Sbjct: 393 GRFAPQFSGYQQQDSQELLAFILDGLHEDLNRVKKKPYLEPKDANGRPDAVVAKEAWENH 452

Query: 366 IARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGS 425
             RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL     R M V +  +D  
Sbjct: 453 RLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRIMEVFLVPADPQ 512

Query: 426 ALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLST 483
             P  Y VTVP  G   DL + L  +  +  +E + V ++ NH   +   +D+    LS 
Sbjct: 513 CRPIQYRVTVPLMGAISDLCEALSKLSGIA-AENMVVTDVYNHRFHKIFQMDE---GLSH 568

Query: 484 IKDDDHLAAYRVPKLV---KKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDD 540
           I   D +  Y V        + + L +  R ++  P +A  +S    YG PL+ S+ +  
Sbjct: 569 ITPRDDIFVYEVCNTSMDGSECITLPVYFREKKSRPSSA--SSGAVLYGQPLLVSVPKHK 626

Query: 541 VISSGKIQSTVQRMLSPFLKK 561
           +      Q+   R +S ++K+
Sbjct: 627 LTLESLYQAVCDR-ISRYIKQ 646


>gi|449688380|ref|XP_002169084.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like, partial
           [Hydra magnipapillata]
          Length = 565

 Score =  267 bits (682), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 189/564 (33%), Positives = 266/564 (47%), Gaps = 104/564 (18%)

Query: 269 RGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV------ 321
           R    GL GL N+GNTCFMNSA+QCL +T    +YF  + Y+ E+N  NPLGM       
Sbjct: 10  RTTKPGLCGLANIGNTCFMNSALQCLSNTTPLTKYFLSNTYKHELNPNNPLGMQGKIAET 69

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELLAFLLDGLHEDLNRVK K
Sbjct: 70  YAELLHHVWGSNTYFTPRNFKMQVGRFAPQFSGYQQQDSHELLAFLLDGLHEDLNRVKQK 129

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
           PYI+ +D  GRPDE  A+E W+NH  RN SIIVD+  G +KST+ CPVC K S+TFDPF 
Sbjct: 130 PYIELQDDKGRPDEICAEEAWSNHTLRNSSIIVDLFHGLFKSTVKCPVCQKKSMTFDPFC 189

Query: 402 YLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELK 461
           YLSLPL     R + +     D S  P      VPK G   DL   +GN+ S     +L 
Sbjct: 190 YLSLPLPIKKERNLGIKFIPLDTSKTPLKVKAIVPKLGNILDLTSAVGNLTS-TDPNKLM 248

Query: 462 VAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKA-------VFLQLIHRLQEQ 514
           VA++      +   +P  SLS I D D +  Y VP  +  +       + + L H  +  
Sbjct: 249 VADVFGSKFHKIY-EPNESLSQITDRDDITIYEVPFNLSNSKNENILIIPVYLRHTREIS 307

Query: 515 EPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLK-------------K 561
               +   S    +GTP++ S+ + ++ ++  +   + R +  ++K             +
Sbjct: 308 YSYTSYGYSNHLLFGTPILVSVPK-NICNAKDLYQIILRAMRRYVKVPVNVEHTPISSEE 366

Query: 562 ESLMHADS---------FDPSSMVTTVDPSGEAHSNSSSN------------IAKEDASS 600
           +   + DS          +PS   T  D S E  S+   N            +AK++  +
Sbjct: 367 DFASNKDSDSIEQISPGIEPSPNSTVDDESTEDMSDDQCNESKIKRDFLEKELAKDNQKN 426

Query: 601 SKAV----TLPNLPLQL----VDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLE 652
            + +     +P+   Q+    +  S     L+   D  + + S S    + +D S +  +
Sbjct: 427 KEKMMSEDVIPDFLFQICVVNMAGSQNIMQLNYNDDNPVNLNSHS---YLAIDCSPQFKK 483

Query: 653 KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQA 712
            Y+    +   E      V    +T  ++L  CL+ FL+EE L  +D WYCPQCKE RQA
Sbjct: 484 YYSEKLAQETEEHDSWNAVCPPKKT--VNLNDCLDLFLQEEKLGEDDPWYCPQCKEHRQA 541

Query: 713 SKKLDLWRLPEVLVIHLKRFSYSR 736
            KK DLW LP+VLVIHLKRFSY+R
Sbjct: 542 FKKFDLWTLPKVLVIHLKRFSYNR 565


>gi|449016365|dbj|BAM79767.1| ubiquitin-specific protease UBP15 [Cyanidioschyzon merolae strain
           10D]
          Length = 814

 Score =  266 bits (680), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 193/630 (30%), Positives = 298/630 (47%), Gaps = 133/630 (21%)

Query: 272 SVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLGMVELLA----- 325
           + GL GL NLGNTCFMNSAIQCL  T   A +F   +YR+++N  NPLG   +LA     
Sbjct: 225 ATGLVGLSNLGNTCFMNSAIQCLASTVPLAEFFLSGEYRKDLNRSNPLGTGGVLAEEFAA 284

Query: 326 ------------------------------------------FLLDGLHEDLNRVKHKPY 343
                                                     FLLDGLHEDLNRV+ KPY
Sbjct: 285 LVRQLWSTSQGTVAPRRFKYQVSRYAPQFSGYGQHDAQEWITFLLDGLHEDLNRVRRKPY 344

Query: 344 IKSKDADGRPDEEVA-DEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMY 402
           I        PD++V  DE W  H ARNDS+IVD+  GQY+S + CP C+K+SVT DPFMY
Sbjct: 345 IPLD-----PDQDVPPDEAWRYHKARNDSVIVDLFHGQYRSRVQCPECDKISVTHDPFMY 399

Query: 403 LSLPLQATTTRTMTVTVFTSD---GSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEE 459
           LSLPL     R +T+ ++T D       P    + +P+    R L + L  +  +  +++
Sbjct: 400 LSLPLPGRRERLVTIRLWTLDDMQNRKPPQCLDLRIPRRANIRMLKERLQQVAGI-DADD 458

Query: 460 LKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAA 519
           + V +    S+               D   L A R  + ++KA  ++ +  +Q ++P A 
Sbjct: 459 IAVVDCGAASL-------------ALDTSCLVAAR--RRIEKASDVEELAAIQVEDPDA- 502

Query: 520 QTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTV 579
              +Q +  GT               + QS  + +LS               P ++  T 
Sbjct: 503 --LAQLEGRGT---------------RSQSGSKGLLSAI-------------PEAVRATA 532

Query: 580 DPSGEAHSNSSSNIAKEDASSSK-AVTLP---NLPLQLVDESNVCFDLS---------VE 626
             +G      +  +     S ++  V +P    LP   +DE +VC  ++         ++
Sbjct: 533 CGNGAIPGADAKLVEVHQYSPNRDPVGIPLLFTLPQDALDERSVCKSINERLRGALPQLD 592

Query: 627 GDKTIRIPSSST---SIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLY 683
            D     P + T   +++  ++W +         FL        NG   ++     + L+
Sbjct: 593 ADAYTLRPRTHTPHSALLFELEWHRAEDAAQVDRFLALNPASESNG-GNRRNSNGAIDLH 651

Query: 684 TCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLE 743
            CL  +   E L  +++WYCP+CK+ ++A K+L L+R P +L+IHLKRF Y+   + KL+
Sbjct: 652 QCLHLWSETEQLDDDNLWYCPRCKKHQRAWKQLSLYRAPSILIIHLKRFQYTSWFRDKLD 711

Query: 744 TFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFD 803
             V FP+ +  L  +  N     R +Y+LYA+++H GG+GSGHYTA       +RW+ FD
Sbjct: 712 VLVEFPLRNLEL-DFAGN-----RVVYDLYAVSHHMGGLGSGHYTASCYRASCSRWFYFD 765

Query: 804 DSHISPINEDD------VKSAAAYVLFYRR 827
           D+++S + ED       + S +AY+LFY+R
Sbjct: 766 DAYVSALPEDPEEVAKRIVSPSAYILFYQR 795


>gi|410919483|ref|XP_003973214.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4-like [Takifugu
           rubripes]
          Length = 1001

 Score =  264 bits (675), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 199/616 (32%), Positives = 288/616 (46%), Gaps = 93/616 (15%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G   L             P  IDNS L +D   +       
Sbjct: 58  WFKQWKKYVGFDSWDMYNVGERNL------------YPGPIDNSGLFSDQDTQ------A 99

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L SWY    G   + RKVI  G+      VEVY L L L
Sbjct: 100 LKEHLIDELDYVLVPTEAWNKLISWYSCLDGQRPIVRKVIEHGMFVKHCKVEVYLLELNL 159

Query: 118 LVMPRGECSTIR-ISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                 + +  R  SK +TI  + +   ++F +  E +  +W+ Y    +  +N  D T+
Sbjct: 160 CENNNMDIAVTRYFSKADTIDTIEKEMRTLFKIPAEKETRLWNKYMSNTYEQLNKPDSTV 219

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E   N +GT  + +      A    +        +S  ++   ++  
Sbjct: 220 QDAGLFHGQVLVIE-QKNEDGTWPRQASHSKSSAASSRNFT------TSPKLSSNSASIS 272

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASV-------GLTGLLNLGNTCFMN 288
            T  N  +  S    L ++  S + LG     +   S        GL GL NLGNTCFMN
Sbjct: 273 STVTNGDNCCSPGYTLNNSSSSGSRLGEYSSYSSSYSYRESQSHPGLCGLSNLGNTCFMN 332

Query: 289 SAIQCLVHTPEFARYFRED-YRREINWQNPLGM--------------------------- 320
           SA+QCL +      YF  D Y  EIN +NPLGM                           
Sbjct: 333 SALQCLSNASPLTEYFLNDQYEAEINRENPLGMRGEIAEAYADLVKQMWLSRSSYVAPRS 392

Query: 321 --------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADE 360
                                ELLAFLLDGLHEDLNRVK KPY+  +DA+GRPDE VA E
Sbjct: 393 FKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLALRDAEGRPDEIVAKE 452

Query: 361 YWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVF 420
            W NH  RNDSIIVD+  G +KSTLVCP C+KVSVTFDPF YL+LPL     RT+ V + 
Sbjct: 453 AWTNHRLRNDSIIVDIFHGLFKSTLVCPECSKVSVTFDPFCYLTLPLPMKKDRTLEVFLV 512

Query: 421 TSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFL--DDPL 478
            SD  + P+ Y V VPK G   DL   L  +C +   E + VA++ NH   +    DD  
Sbjct: 513 RSDPQSRPTQYRVVVPKLGTVTDLCCALTKLCGVA-PENMMVADVYNHRFHKIYRRDD-- 569

Query: 479 ISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISR 538
             L+ I + D +  Y V +   + + L +  R +  +   + T++    +G PL+ ++ +
Sbjct: 570 -GLNQIMEKDDIFVYEVQEEDGERMNLPVYFRERHSKHIGSSTST--VLFGQPLLITVPK 626

Query: 539 DDVISSGKIQSTVQRM 554
            ++I+       ++R+
Sbjct: 627 HNLIADVLYDKILERI 642



 Score =  159 bits (402), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 87/192 (45%), Positives = 121/192 (63%), Gaps = 12/192 (6%)

Query: 641 VVYVDWSQKLLEKYNTHFLENLLEVFKN-----GPVTKKARTEPLSLYTCLEAFLREEPL 695
            V +DW     E    H+ E   E ++       P  KKA    ++L  C+E F   E L
Sbjct: 788 TVAIDWDT---ESKKLHYDEQEAEAYEKHESMLQPQKKKAT---VALKECIELFTTMETL 841

Query: 696 VPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNL 755
              D WYCP CK+ +QA+KK DLW LP +LV+HLKRFSY+R  + KL+T V+FPI D N+
Sbjct: 842 GEHDPWYCPTCKKHQQATKKFDLWSLPRILVVHLKRFSYNRCWRDKLDTVVDFPIRDLNM 901

Query: 756 TKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDV 815
           +++V +  +S   +Y+L A++NHYGGMG GHYTA+ K   + +WY FDDS +S  +ED +
Sbjct: 902 SEFVCDPKAS-PYIYDLIAVSNHYGGMGGGHYTAYGKNKADGKWYYFDDSSVSSASEDQI 960

Query: 816 KSAAAYVLFYRR 827
            + AAYVLFY+R
Sbjct: 961 VTKAAYVLFYQR 972


>gi|223647442|gb|ACN10479.1| Ubiquitin carboxyl-terminal hydrolase 4 [Salmo salar]
          Length = 1005

 Score =  264 bits (674), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 200/622 (32%), Positives = 290/622 (46%), Gaps = 105/622 (16%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        S  P  +DNS L +D   +       
Sbjct: 58  WFKQWKKYVGFD----SWDMYNVGEH--------SLYPGPVDNSGLFSDHETQI------ 99

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L  WYG   G   + RKV+  G+      VEVY L L L
Sbjct: 100 LKEHLIDELDYVLVPTEAWNKLVCWYGCLEGQRPIVRKVVEHGMFVKHCKVEVYLLELNL 159

Query: 118 LVMPRGECSTIR-ISKKETIGELHRRACSIFYLNL-EQICIWDYYGHRKHALMNDMDRTL 175
                 +    R  SK +TI  + +   S+F +   ++  +W+ Y    +  +N  D T+
Sbjct: 160 CENDNMDNVITRHFSKADTIDTIEKEMRSLFEIPTGKETRLWNKYMSNTYEQLNKPDSTV 219

Query: 176 DDANIQMDQDILVEVLDNVNGT------NCKSSIQDNGFAEKKASSVLVEPSKSSLSIAG 229
            DA +   Q +++E   N +GT      + KSS   +              +  S +I  
Sbjct: 220 QDAGLFQGQVLVIE-RKNEDGTWPRQASHPKSSTATSRNFTTSPKLSSNSSATISSTITN 278

Query: 230 GWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRG-------ASVGLTGLLNLG 282
           G S++ G++ N+S+             S N LG     +         +  GL GL NLG
Sbjct: 279 GDSSNSGSTLNNSTS------------SGNRLGGYNSYSSSYNYRESPSQPGLCGLSNLG 326

Query: 283 NTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM--------------------- 320
           NTCFMNSA+QCL +      YF +D Y  EIN +NPLGM                     
Sbjct: 327 NTCFMNSALQCLSNASPLTEYFLDDQYEAEINRENPLGMRGEIAESYADLVKQMWLSRSS 386

Query: 321 --------------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPD 354
                                      ELLAFL+DGLHEDLNRVK KPY+  +DA GR D
Sbjct: 387 YVAPRTFKTQVGRFAPQFSGYQQQDSQELLAFLMDGLHEDLNRVKKKPYLALQDAGGRKD 446

Query: 355 EEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRT 414
           E VA E W NH  RNDSIIVD+  G +KSTLVCP C KVSVTFDPF YL+LPL     RT
Sbjct: 447 EIVAKEAWTNHRLRNDSIIVDIFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPMKKDRT 506

Query: 415 MTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFL 474
           M V +   D  + P+ Y V VPK G   DL   L  +  +  +E + VA++ NH   +  
Sbjct: 507 MEVFLVRIDPQSRPTQYRVVVPKLGSVTDLCSALSRLSGIP-AENMVVADVYNHRFHKIY 565

Query: 475 --DDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPL 532
             DD    L+ I + D +  Y V +   +++ L +  R +  +     T +    +G PL
Sbjct: 566 RRDD---GLNQIMEKDDIFVYEVTEEDAESMNLPVYFRERHSKHTGGSTGTM--LFGQPL 620

Query: 533 VSSISRDDVISSGKIQSTVQRM 554
           + ++ R ++ +    +  ++R+
Sbjct: 621 LITVPRQNLAADMLYEKVLERI 642



 Score =  155 bits (393), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 89/200 (44%), Positives = 127/200 (63%), Gaps = 20/200 (10%)

Query: 637 STSIVVYVDW---SQKLL------EKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLE 687
           +T   V +DW   S+KL       E Y  H  E++L+  K     KKA    ++L  C+E
Sbjct: 786 NTHSTVAIDWDSDSKKLCYDDQEAEAYEKH--ESMLQAPK-----KKAT---VALRECIE 835

Query: 688 AFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVN 747
            F   E L   D WYCP CK+ +QA+KK DLW LP +LV+HLKRFSY+R  + KL+T V+
Sbjct: 836 LFTTMETLGEHDPWYCPTCKKHQQATKKFDLWSLPRILVVHLKRFSYNRCWRDKLDTVVD 895

Query: 748 FPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHI 807
           FP+ D N++++V +  +    +Y+L A++NHYGGMG GHYTA+ K   + +W+ FDDS +
Sbjct: 896 FPVRDLNMSEFVCDPKAG-PYVYDLIAVSNHYGGMGGGHYTAYGKNKADGKWHYFDDSSV 954

Query: 808 SPINEDDVKSAAAYVLFYRR 827
           S  +ED + + AAYVLFY+R
Sbjct: 955 SAASEDQIVTKAAYVLFYQR 974


>gi|301103855|ref|XP_002901013.1| ubiquitin-specific protease, putative [Phytophthora infestans T30-4]
 gi|262101351|gb|EEY59403.1| ubiquitin-specific protease, putative [Phytophthora infestans T30-4]
          Length = 1100

 Score =  263 bits (673), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 205/664 (30%), Positives = 303/664 (45%), Gaps = 142/664 (21%)

Query: 274  GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED--------YRREINWQNPLGMV---- 321
            G+ GL NLGNTCFMNS +QCL++T     YF +         + +EIN  NPLGM     
Sbjct: 465  GVVGLSNLGNTCFMNSMLQCLINTAPLREYFLKKVPETGTLCFTKEINRDNPLGMKGIMA 524

Query: 322  -------------------------------------------ELLAFLLDGLHEDLNRV 338
                                                       EL+ FLLDGLHEDLNRV
Sbjct: 525  VDFASLLRKMWSNEFKVVTPTKLKSVIGQYAPQFAGYQQQDSQELMNFLLDGLHEDLNRV 584

Query: 339  KHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVC--PVCNKVSVT 396
            K KPY K  + +GR D +VA E W   + RNDS+IVD   GQ +S + C    C   SVT
Sbjct: 585  KAKPYTKPVERNGRSDADVAREEWQQFLRRNDSVIVDNFMGQLRSHVTCSDADCGHESVT 644

Query: 397  FDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHG-RCRDLIQVLGNICSLK 455
            FDP+M LS+P+       + V +F ++G  +P  Y + +PK     +D  + L  +  + 
Sbjct: 645  FDPYMSLSVPIPNNEAVGVQVQLFWANGD-IPMKYALHLPKDACSLQDAKEKLSQLSEVP 703

Query: 456  QSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRV------------------PK 497
             S  L   E+ NH I +   D   S+  +++D  L AY +                  P+
Sbjct: 704  ISR-LFFVEVWNHRIIKAYSDKF-SVERVRED-VLHAYELELPVTEYSFSSPTIRPAGPR 760

Query: 498  LV---------KKAVFLQLIHR------------------LQEQEPGAAQTTSQWKAYGT 530
             +         K+   ++L+H+                  L E+  G  Q   + + + T
Sbjct: 761  RLGTLESESERKQMHLVELLHQAPVASPVDGRATSDGYDMLVEEGYGPKQRRVEVELFNT 820

Query: 531  PLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSS 590
            PL+ SI  D   +  +I   V R++   +   +   AD    +S     D          
Sbjct: 821  PLLVSI--DTTWTKAEIHEKVWRVVHRLV---ATGEADKESDASFGCRQD----QRLPYR 871

Query: 591  SNIAKEDASSSKAVTLP--NLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQ 648
             ++ + + +++    LP  N P+ +   SN  F  ++E  +             Y + S 
Sbjct: 872  LHVTEPNGATTFLNDLPRDNEPVDVSGNSNRPFSFTLEWKRNGYQQG-------YDETSA 924

Query: 649  KLLEKYNTHFLENLLEVFKNGPVTKK-ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCK 707
            K +E         L E  K+  ++ K AR   L+L+ CL  F   E L   D WYCP+CK
Sbjct: 925  KRVE---------LHESMKSLEISSKPAR---LTLFDCLAKFTEREQLGEADAWYCPKCK 972

Query: 708  ERRQASKKLDLWRLPEVLVIHLKRFSYSRS----MKHKLETFVNFPIHDFNLTKYVANKN 763
               +A KK DL+ LP+VL+ HLKRF Y+++     + K+ T V FP+ + +L ++V   +
Sbjct: 973  SHVRAFKKFDLFSLPKVLIFHLKRFRYAQNSFYMHRDKISTLVEFPVQELDLAEFVVGPD 1032

Query: 764  SSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVL 823
            S   +LY+LYA++ H GG+G GHYTA  K     RW++F+DSH S     D  SA AYVL
Sbjct: 1033 SGSARLYDLYAVSEHMGGLGGGHYTAVAKNPVNRRWFDFNDSHTSATTAQDAVSAKAYVL 1092

Query: 824  FYRR 827
            FY R
Sbjct: 1093 FYIR 1096


>gi|440804466|gb|ELR25343.1| Ubiquitin carboxylterminal hydrolase 15, putative [Acanthamoeba
           castellanii str. Neff]
          Length = 1164

 Score =  263 bits (673), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 168/479 (35%), Positives = 231/479 (48%), Gaps = 78/479 (16%)

Query: 67  EGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVMPRGECS 126
           EGR YI++P+E W     WY GGP L RK +++G    +  VEV  L L+ +        
Sbjct: 185 EGRHYIIVPEEAWRLWWKWYAGGPPLPRKTVTTGWYNQQYVVEVRLLHLKFVKSSDKNVE 244

Query: 127 -TIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQD 185
                SK  TIG+L +R C    ++   + +WD++   K  L+ DM  TLD+A I  +Q 
Sbjct: 245 LPSSFSKTATIGDLKKRMCKRLKVDPANVRLWDWHARNKIKLLTDMTDTLDEAQIIDNQL 304

Query: 186 ILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEI 245
           +L                    F EK       +P+          S+ + +    SS  
Sbjct: 305 VL--------------------FEEK-------DPATGKFPEDTYGSSYRASGYGSSSTY 337

Query: 246 STSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF- 304
            +S    S+    ++  S    +     G+ GL NLGNTCFMNSA+QCL +T     +F 
Sbjct: 338 GSSSGYGSSSIYGSSSYSYSRYSEPGEPGVCGLQNLGNTCFMNSALQCLSNTAPLTNFFL 397

Query: 305 REDYRREINWQNPLGMV------------------------------------------- 321
           R  Y+ ++N  NPLG                                             
Sbjct: 398 RGTYKDDVNEVNPLGTKGELVEAYTGLLREIWSGSARSTPPRSFKYKLERFAPQFSGYQQ 457

Query: 322 ----ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVC 377
               ELL FLLDG+HEDLNR+K KPY++SK+ADGRPD EVA+E W  H ARNDS+IVD  
Sbjct: 458 HDSQELLGFLLDGIHEDLNRIKQKPYVESKEADGRPDTEVAEETWQGHRARNDSVIVDRF 517

Query: 378 QGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPK 437
           QGQ KSTL+CP C+KVS+TFDPFMYLSLPL    TR + VT  + D +  P  Y + VPK
Sbjct: 518 QGQLKSTLICPECSKVSITFDPFMYLSLPLPMKMTRRLAVTFISRDPARRPVKYALDVPK 577

Query: 438 HGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVP 496
           HG  ++L   +     +  +  L +A++ N    +   D   SL  I+D D    Y +P
Sbjct: 578 HGSIKELRMAVAVFVGV-DARNLILADLYNSRFFKEYSD-RESLDVIQDRDVTVVYELP 634



 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 98/222 (44%), Positives = 142/222 (63%), Gaps = 11/222 (4%)

Query: 611  LQLVDE----SNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF 666
            L+LVD      +V F     G++ I + ++ T   V + W  + L  Y+    E  +EV 
Sbjct: 872  LKLVDHFGVNDHVEFSGGKHGEEVITLKNTQT---VALCWRNESLSFYDDE-KEIDMEVH 927

Query: 667  KNG-PVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVL 725
             +  PV +    + +SLY CLE F + E L PED WYC +C E RQA+KK D+W++P +L
Sbjct: 928  PSARPVERDEGDQSVSLYDCLELFTQAEQLGPEDPWYCNKCAEFRQATKKFDVWKVPRIL 987

Query: 726  VIHLKRFSY-SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGS 784
            V+HLKRFSY ++  + KL+TFV+FP+ D +L+ +V    S+   +YELYA++NHYG +G 
Sbjct: 988  VVHLKRFSYRNKYWREKLDTFVDFPLDDLDLSPHVLGPVST-PPVYELYAVSNHYGSLGG 1046

Query: 785  GHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYR 826
            GHYTA+ K   EN+WY FDDS +S +  + VK++AAYVLFYR
Sbjct: 1047 GHYTAYAKNHRENKWYKFDDSSVSSVQAESVKTSAAYVLFYR 1088


>gi|47229603|emb|CAG06799.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1107

 Score =  263 bits (671), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 206/642 (32%), Positives = 295/642 (45%), Gaps = 120/642 (18%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +    G   L             P  IDNS L ++   +D  A   
Sbjct: 57  WFKQWKKYVGFDSWDMYNVGERNL------------YPGPIDNSGLFSED--QDTQA--- 99

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L SWY    G   + RKVI  G+      VEVY L L L
Sbjct: 100 LKEHLIDELDYVLVPTEAWNKLVSWYSCLDGQRPIVRKVIEHGMFVKHCKVEVYLLELNL 159

Query: 118 LVMPRGECSTIR-ISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                 + +  R  SK +TI  + +   ++F +  E +  +W+ Y    +  +N  D T+
Sbjct: 160 CENNNMDIAVTRYFSKADTIDTIEKEMRTLFKIPAEKETRLWNKYMSNTYEQLNKPDSTV 219

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +   Q +++E  +           +D  +  + + S     S  + + +   S++ 
Sbjct: 220 QDAGLFHGQVLVIEQKN-----------EDGSWPRQASHSKSSSASSRNFTTSPKLSSN- 267

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASV---------------GLTGLLN 280
             S   SS ++   N  S   + N   SSG +  G                  GL GL N
Sbjct: 268 --STGISSTVTNGDNCCSPGYALNNSTSSGSSRLGGYSSYSSSYNYRESQSQPGLCGLSN 325

Query: 281 LGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM------------------- 320
           LGNTCFMNSA+QCL +      YF  D Y  EIN +NPLGM                   
Sbjct: 326 LGNTCFMNSALQCLSNASPLTEYFLNDQYEAEINRENPLGMRGEIAEAYADLVKQMWLSR 385

Query: 321 ----------------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGR 352
                                        ELLAFLLDGLHEDLNRVK KPY+  +DA+GR
Sbjct: 386 SSYVAPRTFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLALRDAEGR 445

Query: 353 PDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTT 412
           PDE VA E W NH  RNDSIIVD+  G +KSTLVCP C+KVSVTFDPF YL+LPL     
Sbjct: 446 PDEIVAKEAWTNHRLRNDSIIVDIFHGLFKSTLVCPECSKVSVTFDPFCYLTLPLPMKKD 505

Query: 413 RTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR 472
           RTM V +  SD  + P+ Y V VPK G   DL   L  +C +   E + VA++ NH   +
Sbjct: 506 RTMEVFLVRSDPQSRPTQYRVVVPKLGAVTDLCYALSKLCGVA-PENMMVADVYNHRFHK 564

Query: 473 FL--DDPLISLSTIKDDDHLAAY--------RVPKLVKKAVFLQLIHRLQEQEPGAAQTT 522
               DD L  +   KDD  +  +        R  ++  + + L +  R +  +   + T+
Sbjct: 565 IYRRDDGLNQIME-KDDIFVWVFTKSSTTRTRCRRMDGERMNLPVYFRERHNKHVGSSTS 623

Query: 523 SQWKAYGTPLVSSISRDDVISS-------GKIQSTVQRMLSP 557
           +    +G PL+ ++ + ++I+         +I   V+R  SP
Sbjct: 624 TV--LFGQPLLITVPKHNLIADVLYDKILERIGRYVKRAQSP 663



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/180 (44%), Positives = 111/180 (61%), Gaps = 12/180 (6%)

Query: 641 VVYVDWSQKLLEKYNTHFLENLLEVFKN-----GPVTKKARTEPLSLYTCLEAFLREEPL 695
            V +DW     E    H+ E   E ++       P  KKA    ++L  C+E F   E L
Sbjct: 822 TVAIDWDT---ESKKLHYDEQEAEAYEKHESMLQPQKKKAT---VALKECIELFTTMETL 875

Query: 696 VPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNL 755
              D WYCP CK+ +QA+KK DLW LP +LV+HLKRFSY+R  + KL+T V+FPI D N+
Sbjct: 876 GEHDPWYCPTCKKHQQATKKFDLWSLPRILVVHLKRFSYNRCWRDKLDTVVDFPIRDLNM 935

Query: 756 TKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDV 815
           +++V N  +S   +Y+L A++NHYGGMG GHYTA+ K   + RW+ FDDS +S  +ED +
Sbjct: 936 SEFVCNPKAS-PYIYDLIAVSNHYGGMGGGHYTAYCKNKADGRWHYFDDSSVSSASEDQI 994


>gi|403339921|gb|EJY69221.1| Ubiquitin carboxyl-terminal hydrolase [Oxytricha trifallax]
          Length = 1228

 Score =  261 bits (668), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 258/978 (26%), Positives = 420/978 (42%), Gaps = 178/978 (18%)

Query: 1    WWQHWIDYVNQDQPNNTGDG-------SSLLEHFNSAGSSASK-----RPSGIDNSDLVN 48
            W+  W+ Y  Q+ PN  GD        +  LE   +      K      P  I++ + + 
Sbjct: 276  WFNKWLQYTFQEIPNMIGDTQIEDQMTTLKLEDDKTEQEEVQKDANINHPGPINSLEDLK 335

Query: 49   DATAEDP---------GAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGPT-------L 92
            + T +D              +I  T LEG+D++++  +VWN L + Y G          L
Sbjct: 336  EITVQDQFLQLKSENQEQEFQIKQTCLEGKDFLIVSDDVWNYLFAVYEGNDIPRYSINLL 395

Query: 93   ARKVISSGLSQTE---LAVEVYPLRLQLLVMPRGE-------CSTIRISKKETIGELHRR 142
              +  S   SQ+E   L +E++  ++Q+ ++P+          + + IS+   + +L  +
Sbjct: 396  KHQSCSDKDSQSEKKELIIEIFNKKVQIYILPKMRSHQYLKVAAALYISRLANVKDLREK 455

Query: 143  ACSIFYLN-------LEQICIWDYYGHRKHALMNDMDRTLDDAN-----IQMDQDILVEV 190
              SI   +        E + I   +    H  + ++++  D        + +D  IL   
Sbjct: 456  IASILKESSNEQRSKQELLDISRLWKLDPHESVFEVEKYYDIETRESLPLHIDGQILQ-- 513

Query: 191  LDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPN 250
             D+ N  +   S QD    E +++  L  P  +  +        K     +  +     N
Sbjct: 514  -DSQNLEDINISDQDVLLYEVQSAFFL--PKNNKFAFIPKEKKEKQIKIKNFLKNQNDEN 570

Query: 251  LASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YR 309
            L+ ++     L       + ++ GLTGL NLGNTC+MNS +QCL +T   A+Y   D Y 
Sbjct: 571  LSESQLM--KLPLQDCLNQKSNGGLTGLQNLGNTCYMNSVLQCLSNTEPLAKYLIFDCYT 628

Query: 310  REINWQNPLGMV-----------------------------------------------E 322
              IN  NPLG                                                 E
Sbjct: 629  SHINRNNPLGTQGKLAIAFSELLYELYVGQENHVAPWDVKNIISRRAVQFSGFAQHDSQE 688

Query: 323  LLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYK 382
            +L+FLL+ LHEDLN +  KPYI+ KD D R DE+VA+EYW     R  S++VD+  GQ K
Sbjct: 689  MLSFLLETLHEDLNDIVKKPYIEYKDFDNRKDEDVANEYWEGFKQREKSVLVDLFYGQLK 748

Query: 383  STLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCR 442
            S + C VC K+S++FDPF  LS+P+       + V  F  D         + V ++    
Sbjct: 749  SRVQCTVCGKISISFDPFNMLSVPIPQIKDSFVNVRYFPYDLKEQHKILRINVGEYESLS 808

Query: 443  DL----IQVLGNICSLKQSEELKVAEIQNH-SIQRFLDDPLISLSTIKDDDHLAAYRVPK 497
            +L    ++  G I +    EE+ V  +Q    I  F  +  I    +  +  + AY  P 
Sbjct: 809  ELNLKILEATGKISA----EEVFVGIMQKRDKIDVFGKENFIK-KVLDKNYEIVAYERPL 863

Query: 498  LVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPL--VSSISRDDVISSGKIQSTVQRML 555
                A+  Q  H L E +    +         TPL     +  +  +S  +++  + R  
Sbjct: 864  ----ALLQQERHFLVEIKLYHLKRNWMLITQPTPLNYARLLCMNPKMSVREMKLEIYRFF 919

Query: 556  SPFLKKESLMHADSFDPSSMVTTVDPSGEAH------SNS---------SSNIAKEDA-- 598
             P++K + L      +      +V    E        SN          ++N+ KE+   
Sbjct: 920  RPYVKTDELNQVFKRESQYWSESVRIEKEYQWFFENKSNRGNHPYDLFINNNMKKEEGLL 979

Query: 599  --SSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSST------SIVV------YV 644
               S +     N   +   + N  FDL    +K++R  + S        +V+      YV
Sbjct: 980  WGYSQERCEFCN---KHHKDQNCAFDLL--DNKSLRQITDSMREKRDLELVIIFNHNQYV 1034

Query: 645  DWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCP 704
            D  Q+L E+   +      + FK  P   K   + +SLY C+  F +EE L   D WYC 
Sbjct: 1035 D-VQELQEQQFVNVDSAPQQQFKKYPTAIK---DAISLYDCINWFSQEELLTGNDKWYCS 1090

Query: 705  QCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK-HKLETFVNFPIHDFNLTKYV---- 759
             CK  + A KK+++++ PE L+IHLKRFS+ R+    K+E  + FPI D +L ++     
Sbjct: 1091 HCKNHQNALKKMEIFKAPEYLIIHLKRFSHQRAYSARKIEDVIEFPIEDLDLNEHCLGNK 1150

Query: 760  ------ANKNSSRRQL-YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINE 812
                   +K+ +++ L Y+LYA++NHYG +  GHYTA  +    ++WY FDDSH++ I  
Sbjct: 1151 LLLSNPKDKSKAQKSLKYDLYAVSNHYGSLHGGHYTAFAQNPITSKWYEFDDSHVTEIG- 1209

Query: 813  DDVK---SAAAYVLFYRR 827
             DV+   + A YVLFY+R
Sbjct: 1210 -DVRRLVNKAGYVLFYKR 1226


>gi|426340532|ref|XP_004034183.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 isoform 1
           [Gorilla gorilla gorilla]
          Length = 633

 Score =  260 bits (665), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 210/618 (33%), Positives = 294/618 (47%), Gaps = 95/618 (15%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D   + EH        +  P  IDNS L +D  ++       
Sbjct: 41  WFKQWKKYVGFD----SWDMYHVGEH--------NLFPGPIDNSGLFSDPESQT------ 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 83  LKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 142

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T
Sbjct: 143 CENSDPTNVLSC-HFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNT 201

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDN-------GFAEKKASSVLVEPSKSSLSI 227
           + DA +   Q +++E   N +GT  + ++Q          F     SS     S S+  I
Sbjct: 202 VQDAGLYQGQVLVIEP-QNEDGTWPRQTLQSKSSTAPSRNFTTSPKSSASPYSSVSASLI 260

Query: 228 AGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFM 287
           A G S S  T   HSS +S   +  SA  +     SS +       GL GL NLGNTCFM
Sbjct: 261 ANGDSTS--TCGMHSSGVSRGGSGFSASYNCQEPPSSHIQP-----GLCGLGNLGNTCFM 313

Query: 288 NSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------------------------- 321
           NSA+QCL +T     YF +++Y  EIN  NPLGM                          
Sbjct: 314 NSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPR 373

Query: 322 ----------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVAD 359
                                 ELLAFLLDGLHEDLNRVK KPY++ KDA+GRPD  VA 
Sbjct: 374 MFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAK 433

Query: 360 EYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTV 419
           E W NH  RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL     R M V +
Sbjct: 434 EAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEVFL 493

Query: 420 FTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDP 477
             +D    P+ Y VTVP  G   DL + L  +  +  +E + VA++ NH   +   +D+ 
Sbjct: 494 VPADPHCRPTQYRVTVPLMGAVSDLCEALSRLSGIA-AENMVVADVYNHRFHKIFQMDE- 551

Query: 478 LISLSTIKDDDHLAAYRVPKL-VKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSI 536
              L+ I   D +  Y V    V  +  + L    +E++   + T+S    YG PL+ S+
Sbjct: 552 --GLNHIMPRDDIFVYEVCSTSVDGSECVTLPVYFRERKSRPSSTSSASALYGQPLLLSV 609

Query: 537 SRDDVISSGKIQSTVQRM 554
            +  +      Q+   R+
Sbjct: 610 PKHKLTLESLYQAVCDRI 627


>gi|292615153|ref|XP_002662557.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 isoform 2 [Danio
           rerio]
          Length = 958

 Score =  258 bits (660), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 198/609 (32%), Positives = 277/609 (45%), Gaps = 130/609 (21%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 57  WFKQWKKYVGFD----SWDLYNVGEH--------NLYPGPIDNSGLFSDRKSQ------S 98

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L SWYG       + RKV+  G+      VEVY L L L
Sbjct: 99  LKEHLIDELDYVLVPTEAWNKLVSWYGSLGNQKPIIRKVVEHGMFVKHCKVEVYLLELNL 158

Query: 118 LVMPRGECSTIR-ISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTL 175
                 +    R  SK +TI  + +   S+F +  E +  +W+ Y    +  +N +D   
Sbjct: 159 CENDNMDKVVTRHFSKADTIDTIEKEMRSLFDIPSEKETRLWNKYMSNTYEQLNKLD--- 215

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
                                    S++QD G  + +   VLV   K+            
Sbjct: 216 -------------------------STVQDAGLFQGQ---VLVIEKKN------------ 235

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
                   E  T P  +   + ++   S       A  GL GL NLGNTCFMNSA+QCL 
Sbjct: 236 --------EDGTWPRQSCHSNYNSYSSSYSYRESAAQPGLCGLSNLGNTCFMNSALQCLS 287

Query: 296 HTPEFARYFRED-YRREINWQNPLGM---------------------------------- 320
           +TP    YF ED Y  EIN +NPLGM                                  
Sbjct: 288 NTPPLTEYFLEDRYEAEINRENPLGMRGEIAEAYADLVKQMWLSRSSYVAPRTFKTQVGR 347

Query: 321 -------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELLAFLLDGLHEDLNRVK KPY+  +DA+GRPDE VA E WANH  
Sbjct: 348 FAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLALRDAEGRPDEIVAKEAWANHRL 407

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDSIIVD+  G +KSTLVCP C+KVSVTFDPF YL+LPL     RTM V +  +D    
Sbjct: 408 RNDSIIVDIFHGLFKSTLVCPECSKVSVTFDPFCYLTLPLPMKKDRTMEVYLVRTDPQFR 467

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFL--DDPLISLSTIK 485
              + V VPK G   DL   L  +  +  SE + VA++ NH   +    DD    L+ I 
Sbjct: 468 AMQFRVVVPKMGAVADLCSALAKLSGVP-SENMVVADVYNHRFHKIYKRDD---GLNQIM 523

Query: 486 DDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSG 545
           + D +  Y V  L + +  + L    +E+    +  +S    +G PL+ ++ R ++    
Sbjct: 524 EKDDIFVYEV--LEEDSERMNLPVYFRERHAKHSGGSSGTMLFGQPLLITVPRLNLTVDT 581

Query: 546 KIQSTVQRM 554
             +  ++R+
Sbjct: 582 LYERVLERI 590



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/200 (44%), Positives = 125/200 (62%), Gaps = 20/200 (10%)

Query: 637 STSIVVYVDW---SQKLL------EKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLE 687
           +T   V +DW   +++L       E Y+ H  E++L         KK  T  ++L  C+E
Sbjct: 741 TTHSTVAIDWDSDTKRLCYDDQEAEAYDKH--ESMLHA------QKKKTT--VALRECIE 790

Query: 688 AFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVN 747
            F   E L   D WYCP CK+ +QA+KK DLW LP +LV+HLKRFSY+R  + KL+T V+
Sbjct: 791 LFTTMETLGEHDPWYCPTCKKHQQATKKFDLWSLPRILVVHLKRFSYNRCWRDKLDTVVD 850

Query: 748 FPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHI 807
           FPI D N++++V +  +    +Y+L A++NHYGGMG GHYTA+ K   + +WY FDDS +
Sbjct: 851 FPIRDLNMSEFVCDPKAD-PYIYDLIAVSNHYGGMGGGHYTAYGKNKADGKWYYFDDSSV 909

Query: 808 SPINEDDVKSAAAYVLFYRR 827
           S   ED + + AAYVLFY+R
Sbjct: 910 SAATEDQIVTKAAYVLFYQR 929


>gi|291393673|ref|XP_002713400.1| PREDICTED: ubiquitin specific protease 4 [Oryctolagus cuniculus]
          Length = 859

 Score =  258 bits (659), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 189/565 (33%), Positives = 271/565 (47%), Gaps = 94/565 (16%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       
Sbjct: 41  WFKQWKKYVGFD----SWDMYNVGEH--------NLFPGPIDNSGLFSDPESQ------T 82

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L
Sbjct: 83  LKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKL 142

Query: 118 LVM--PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
                P    S    SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T
Sbjct: 143 CENSDPTNVLS-CHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNT 201

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS 234
           + DA +   Q +++E   N +GT  + ++Q NG                      G+SAS
Sbjct: 202 VQDAGLYQGQVLVIEP-QNEDGTWPRQTLQSNG---------------------SGFSAS 239

Query: 235 KGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCL 294
                  SS +                            GL GL NLGNTCFMNSA+Q  
Sbjct: 240 YSCQEPPSSHVQP--------------------------GLCGLGNLGNTCFMNSALQTQ 273

Query: 295 V--HTPEFARYFREDYRREINWQNPLGMVELLAFLLDGLHEDLNRVKHKPYIKSKDADGR 352
           V    P+F+ Y ++D +            ELLAFLLDGLHEDLNRVK KPY++ KDA+GR
Sbjct: 274 VGRFAPQFSGYQQQDSQ------------ELLAFLLDGLHEDLNRVKKKPYLELKDANGR 321

Query: 353 PDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTT 412
           PD  VA E W NH  RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+LPL     
Sbjct: 322 PDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKD 381

Query: 413 RTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR 472
           R M V +  +D    P+ Y VTVP  G   DL   L  +  +  +E + V ++ NH   +
Sbjct: 382 RVMEVFLVPADPRCRPTQYRVTVPLMGAVSDLCDALSRLSGIA-AENMVVTDVYNHRFHK 440

Query: 473 F--LDDPLISLSTIKDDDHLAAYRV-PKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYG 529
              +D+    L+ I   D +  Y V    V  +  + L    +E++   + T+S    YG
Sbjct: 441 IFQMDE---GLNHIMPRDDIFVYEVCSSSVDGSECVTLPVYFRERKSRPSSTSSGAVLYG 497

Query: 530 TPLVSSISRDDVISSGKIQSTVQRM 554
            PL+ S+ +  +      Q+   R+
Sbjct: 498 QPLLVSVPKHKLTLESLYQAVCDRI 522



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 86/205 (41%), Positives = 127/205 (61%), Gaps = 5/205 (2%)

Query: 623 LSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSL 682
           L+ +G K +R+ S ST   + +DW  +    Y         E   +    +K +   ++L
Sbjct: 618 LATDG-KLLRLSSRST---LAIDWDSETRSLYYDEQESEAFEKHVSMLQPQKKKKTAVAL 673

Query: 683 YTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKL 742
             C+E F   E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSYSR  + KL
Sbjct: 674 RDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYSRYWRDKL 733

Query: 743 ETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNF 802
           +T V FP+   N++++V +  S+R  +Y+L A++NHYG MG GHYTA+ K     +WY F
Sbjct: 734 DTAVEFPVRALNMSEFVCDP-SARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYF 792

Query: 803 DDSHISPINEDDVKSAAAYVLFYRR 827
           DDS++S  +E+ + + AAYVLFY+R
Sbjct: 793 DDSNVSLASEEQIVTKAAYVLFYQR 817


>gi|403275332|ref|XP_003929404.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 32 [Saimiri
            boliviensis boliviensis]
          Length = 1536

 Score =  258 bits (659), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 236/858 (27%), Positives = 363/858 (42%), Gaps = 205/858 (23%)

Query: 18   GDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAED-----PGAGPEIVDTLLEGRDYI 72
            G   ++L HFN       ++P  IDN  LV     +       G   +    L+ GRDY 
Sbjct: 488  GANGNILLHFNP------QKPGAIDNQPLVTQEPVKATSLTLEGGRLKRTPQLIHGRDYE 541

Query: 73   LLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELA-VEVYPLRLQLLVM---PRGECSTI 128
            ++P+ VW  L+ WYG    L R VI +  S+T++  +E++P  L  L      R + S I
Sbjct: 542  MVPEPVWRALYHWYGANLALPRPVIKN--SKTDIPELELFPRYLLFLRQQPATRTQQSNI 599

Query: 129  RI----------------------SKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHA 166
             +                      S+ +TI E+H        +  E + +W Y       
Sbjct: 600  WVNMGNVPSPNAPLKRVLAYTGCFSRMQTIKEIHEYLSQRLRIKEEDMRLWLYNSENYLT 659

Query: 167  LMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLS 226
            L++             D+D  +E L           IQD          +++E     +S
Sbjct: 660  LLD-------------DEDHRLEYL----------KIQDE-------QHLVIEVRNKDMS 689

Query: 227  IAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCF 286
                 S    +S+    ++ T                          G TGL NLGNTCF
Sbjct: 690  WPEEMSFIANSSKIDRHKVPTEK------------------------GATGLSNLGNTCF 725

Query: 287  MNSAIQCLVHTPEFARYF---REDYRREINWQNPLGMV---------------------- 321
            MNS+IQC+ +T    +YF   R  Y  E+N  NP+GM                       
Sbjct: 726  MNSSIQCVSNTQPLTQYFISGRHLY--ELNRTNPIGMKGHMAKCYGDLVQELWSGTQKNV 783

Query: 322  -------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEE 356
                                     ELLAFLLDGLHEDLNRV  KPY++ KD+DGRPD E
Sbjct: 784  APLKLRWTIAKYAPRFNGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVELKDSDGRPDWE 843

Query: 357  VADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMT 416
            VA E W NH+ RN SI+VD+  GQ +S + C  C  +SV FDPF +LSLPL   +   + 
Sbjct: 844  VAAEAWDNHLRRNRSIVVDLFHGQLRSQVKCKTCGHISVRFDPFNFLSLPLPMDSYMHLE 903

Query: 417  VTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF-LD 475
            +TV   DG+  P  Y + +    +   L + L ++C L  SE++ +AE+   +I+ F  D
Sbjct: 904  ITVIKLDGTT-PVRYGLRLNMDEKYTGLKKQLSDLCGL-NSEQILLAEVHGSNIKNFPQD 961

Query: 476  DPLISLSTIKDDDHLAAYRVP----------KLVKKAVFLQLIHRLQEQEPGAAQTTSQW 525
            +  + LS       L A+ +P              +   L  + R +E+E      T + 
Sbjct: 962  NQKVRLSV---SGFLCAFEIPVPASPISASSPTQTEVTVLDSVFRGKEKEKKTNGRTMRT 1018

Query: 526  KAY------------GTPLVSSIS----RDDVISSGKIQSTVQRMLSPFLKKESLMHADS 569
            + Y            G PL+   +    + D+  +  IQ  V R+ SP   +E+  HA  
Sbjct: 1019 ELYFLSSQKNRPSLFGMPLIVPCTVHTRKKDLYDAVWIQ--VSRLASPLPPQEASNHAQD 1076

Query: 570  FDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVE-GD 628
             D        D  G  +  +   + K+  S +                  C    ++ G+
Sbjct: 1077 CD--------DSMGYQYPFTLRVVQKDGNSCA-----------WCPWYRFCRGCKIDCGE 1117

Query: 629  KTIRIPSSSTSIVVYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLE 687
                I ++     + VDW    L  +Y T   E +++  ++   +++A+ EP++L +CL 
Sbjct: 1118 DRAFIGNA----YIAVDWDPTALHLRYQTS-QERVVDEHESVEQSRRAQAEPINLDSCLR 1172

Query: 688  AFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVN 747
            AF  EE L   +M+YC +CK    A+KKLDLWRLP +L+IHLKRF +      K +  V 
Sbjct: 1173 AFTSEEELGENEMYYCSKCKTHCLATKKLDLWRLPPILIIHLKRFQFVNGRWIKSQKIVK 1232

Query: 748  FPIHDFNLTKYVANKNSS 765
            FP   F+ + ++  ++ +
Sbjct: 1233 FPRESFDPSAFLVPRDPA 1250



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 40/62 (64%), Gaps = 3/62 (4%)

Query: 767  RQLYELYALTNHYGGMGSGHYTAHIKLLDEN-RWYNFDDSHISPINEDDVKSAAAYVLFY 825
            + +Y LYA++ H G +G GHY  + K  + N +WY ++DS    ++ D++ + +AY+LFY
Sbjct: 1439 KPIYNLYAISCHSGILGGGHYVTYAK--NPNCKWYCYNDSSCKELHPDEIDTDSAYILFY 1496

Query: 826  RR 827
             +
Sbjct: 1497 EQ 1498


>gi|268536766|ref|XP_002633518.1| Hypothetical protein CBG05381 [Caenorhabditis briggsae]
          Length = 899

 Score =  256 bits (653), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 245/841 (29%), Positives = 374/841 (44%), Gaps = 168/841 (19%)

Query: 65  LLEGRDYILLPQEVWNQLHSWYGGGPT----LARKVISSGLSQTELAVEVYPLRLQLLVM 120
           L E  DY  +P++ + +L  ++G        + R+VI    S   L+V+VYP R+  + +
Sbjct: 94  LAEQIDYTTIPEDCFKELVRYFGVDDERRDYIERQVIKKNNS---LSVDVYP-RIIYIAL 149

Query: 121 PRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANI 180
            R     + +  K     +  R   I  LNL +     +Y      +MND +  L D   
Sbjct: 150 ARNRAMKVELILKPEDTMVTLRDRVIQELNLNESDSIRFY------VMNDENPELIDTTQ 203

Query: 181 QMDQ--DILVEVLDNVNGTNCKSSIQDNG--FAEKKASSVLVEPSKSSLSIAGGWSASKG 236
            +D   D + +VL +V         ++NG  F + K  +        S S+ G  S+S G
Sbjct: 204 SIDSYFDTVQKVLVDV---------EENGEFFFKNKNPT-----QPQSKSLFGNQSSSLG 249

Query: 237 TSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVH 296
            + N +S   +  + ++ R           TT GA     GL NLGNTCFM SA+QCL +
Sbjct: 250 GNGNGASNSYSYSSSSAHR-----------TTPGA----CGLSNLGNTCFMASALQCLSN 294

Query: 297 TPEFARYFRED-YRREINWQNPLGMV---------------------------------- 321
            P    YF  + Y  +IN +NPLG                                    
Sbjct: 295 VPPLRDYFLNNKYTEDINDENPLGTRGNLALAVGELMKGMWSGEYSSINPRKFKGIIGQF 354

Query: 322 -------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGR-PDEEVADEYWANHIA 367
                        EL+A++LDGLHEDLNRVK KPYI+  D D + P+ E A + W ++  
Sbjct: 355 APRFNGYTQQDAHELMAYMLDGLHEDLNRVKQKPYIQDNDEDQKLPEAEYAAKSWHSYKL 414

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQAT--TTRTMTVTVFTSDGS 425
           RNDSIIVD+  GQ +STLVCPVC+ VS+ FDPF Y+SLPL A     R   + +F     
Sbjct: 415 RNDSIIVDLMHGQLRSTLVCPVCDTVSIKFDPFGYISLPLPAKEQIVRQTVIVMFLERKW 474

Query: 426 A---LPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLS 482
           A   L  T T TV    R          +   K   E K   +  H   ++ DD    ++
Sbjct: 475 AKFSLGITDTTTVEDAER----------LMLEKLQPEKKHHFVFFHVPSQYHDD----IT 520

Query: 483 TIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGT---------PLV 533
            ++  D +   RVP   ++    ++ H L      + + T  + AY           P++
Sbjct: 521 VLRPSDKV---RVPG--REVYVAEVEHDL------SVKGTRIFVAYNRIKLLRPASLPMI 569

Query: 534 SSISRDDVISSGKIQSTVQRMLSPFLKKESL---MHADSFDPSSMVTTVDPSGEAHSNSS 590
            S+   DV++ G +   V      F   + +   + A+S D  SM           SNS+
Sbjct: 570 YSLPPGDVLTRGFLNDHVFATTKKFFINQKISVDVAANSNDEDSM---------NGSNSA 620

Query: 591 SNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKL 650
                    +    T   LP+   DE              I  P+ + S  VY ++ Q  
Sbjct: 621 DEREPYKLFAGPPGTQTPLPIPPTDEP-------------IAFPNEN-SHDVYHNFLQIS 666

Query: 651 LEKYNTHFLENL--LEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKE 708
            +  ++    N   L++ +        R   + L   L+ + ++E L  +D WYCP+CK+
Sbjct: 667 FQWKDSKLFNNYKGLDLIEREMTVSTRRK--VFLEETLDWYTKKEQLGEQDSWYCPKCKK 724

Query: 709 RRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQ 768
             +A+K+LD+W+LPE+LV+HLKRF Y++  + KL   V  P+   +LT  + N N   + 
Sbjct: 725 HERATKQLDMWKLPEILVLHLKRFQYTKWSREKLTWEVVIPVRGLDLTNKIVNPNHE-KA 783

Query: 769 LYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPI--NEDDVKSAAAYVLFYR 826
           +Y+L A++ HYG M  GHYTA        +WY+F+DS  S      D  +S+  Y+L YR
Sbjct: 784 IYDLIAVSRHYGSMSGGHYTAAAFNDHAQKWYDFNDSSASATYPPTDPYESSDPYILVYR 843

Query: 827 R 827
           R
Sbjct: 844 R 844


>gi|410898980|ref|XP_003962975.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 11-like [Takifugu
           rubripes]
          Length = 963

 Score =  254 bits (648), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 195/613 (31%), Positives = 280/613 (45%), Gaps = 143/613 (23%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W ++V       TGD +S            S  P  IDN++L +D  +        
Sbjct: 44  WYEQWKEFVE------TGDQNS------------SSFPGQIDNTELFDDLDSF------H 79

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           I D L+E  D++L+P E W++L SWYG   G P L RKV+   L  T + VE+YP+ L L
Sbjct: 80  IKDRLVENEDFMLVPAEAWHKLLSWYGMVDGQPPLERKVVD--LPST-VKVEIYPIELFL 136

Query: 118 LVMPRGE-CSTIRISKKETIGELHRRACSIFYLNLEQIC-IWDYYGHRKHALMNDMDRTL 175
            +    E   T++ S+ + I  + R  C+ F + +   C +W          + +M  ++
Sbjct: 137 CLHSNMENVVTLQFSRTDNIYTIQRAMCAAFAVPVGSECRLWMKSSDSSCERLRNMHMSV 196

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA +     +++E   N +GT                                 W +S+
Sbjct: 197 LDACLSTGMTVVMET-RNADGT---------------------------------WPSSR 222

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
                +S E           + D+  G  GV          GL NLGNTCFMNSA+QCL 
Sbjct: 223 PQIMRNSVE-----------EHDSYRGQPGVC---------GLTNLGNTCFMNSALQCLS 262

Query: 296 HTPEFARYF-REDYRREINWQNPLGMV--------------------------------- 321
           +TP    YF R  Y  E+N+ NPLGM                                  
Sbjct: 263 NTPPLTEYFLRNSYLDELNFTNPLGMKGEIAEAYADVIKQMWSGRHYSVVPRIFKTKVGH 322

Query: 322 --------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELL+FLLDGLHEDLNRVK+K YI+ +DADGR D+EVA E W NH  
Sbjct: 323 FASQFLGYQQHDSQELLSFLLDGLHEDLNRVKNKEYIELRDADGRADQEVAKEAWRNHRR 382

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDS+IVD   G +KSTL+CP C K+SVTFDPF YLS+PL  +  R M V   + D  A 
Sbjct: 383 RNDSVIVDTFHGLFKSTLICPECQKISVTFDPFCYLSVPLPVSKERIMEVFFVSLDPHAK 442

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTIKD 486
           P+ + V VPK G+  DL   L  +  +  S ++ VA++ NH   + +  D   SLS I D
Sbjct: 443 PAQHRVVVPKAGKVSDLCAALAEMTDVPPS-QMVVADVFNHRFYKIYTSDE--SLSCILD 499

Query: 487 DDHLAAYRVP---KLVKKAVFLQLI--HRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDV 541
            D +  Y +    +  ++ V L L    R   ++ G+  ++     +G PL+ S+ R   
Sbjct: 500 RDDIFVYELSMSGEQQEEQVLLALYLRERSHYRDYGSGSSSYSTTLFGHPLLLSVPRSRF 559

Query: 542 ISSGKIQSTVQRM 554
                    +QR+
Sbjct: 560 SQEALYDLFLQRL 572



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/194 (36%), Positives = 105/194 (54%), Gaps = 31/194 (15%)

Query: 638 TSIVVYVDWSQKLLEKYNTHFLENLLEVF-KNGPVTKKARTEPLSLYTCLEAFLREEPLV 696
           T   V +DW  ++ +++   + EN  E + K+  +    +   + L  C+E F   E L 
Sbjct: 749 TQPYVAIDWDPEMKKRF---YNENEAEKYVKHASMDVPLQQTTVQLQECIELFTTVETLE 805

Query: 697 PEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLT 756
            E+ WYCP CK+ + A+KKLDLW LPEVL+IHLKRFSY++  + KLE+ V FP+ D + +
Sbjct: 806 EENPWYCPVCKKHQLATKKLDLWSLPEVLIIHLKRFSYTKLTREKLESVVEFPLRDLDFS 865

Query: 757 KYVANKNSSRRQ---LYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINED 813
            ++  K  S  +    Y+L A++NHYGG+  GH           R   F           
Sbjct: 866 GFLLRKTVSSEEPPSCYDLIAVSNHYGGLRDGHC----------RTLCF----------- 904

Query: 814 DVKSAAAYVLFYRR 827
              ++AAYVLFY+R
Sbjct: 905 ---TSAAYVLFYQR 915


>gi|74139517|dbj|BAE40896.1| unnamed protein product [Mus musculus]
          Length = 548

 Score =  252 bits (644), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 180/524 (34%), Positives = 258/524 (49%), Gaps = 62/524 (11%)

Query: 351 GRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQAT 410
           GRPD EVA E W NH  RNDS+IVD   G +KSTLVCP C  VSVTFDPF YLS+PL   
Sbjct: 7   GRPDLEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSVPLPVC 66

Query: 411 TTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSI 470
           + R + V     D    P  + V VPK G   DL   L    S+   +++ VA++ +H  
Sbjct: 67  SRRVLEVFFVPMDPRRKPEQHRVVVPKKGNISDLCVALSTHTSVA-PDKMIVADVFSHRF 125

Query: 471 QRF--LDDPLISLSTIKDDDHLAAYRVPKLVKKAVF----LQLIHRLQEQEPGAAQTTSQ 524
            +   L+DPL   S I D D +  Y V   ++        + +   L+E+ P      S 
Sbjct: 126 YKLYQLEDPL---SGILDRDDIFVYEVTGRIEPVEGSRDDIVVPVYLRERTPSRDYNNSY 182

Query: 525 WKA--YGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKES-------------LMHADS 569
           +    +G PL+ S+ RD     G + + +   LS ++ K +                   
Sbjct: 183 YGLILFGHPLLVSVPRDRFSWEG-LYNILMYRLSRYVTKPTSDEDDGDEKVDEDEDEDVE 241

Query: 570 FDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVT--LPNL------------------ 609
            D SS     + S    ++ +    +E A +S  VT   P+L                  
Sbjct: 242 DDSSSEEEKEEMSAPTVNDGTREAEQEQAGTSSGVTERCPSLLDNSLRASQWPPRRRRKQ 301

Query: 610 --PLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF- 666
              LQ V+ +          D+T       T   + +DW   +  +Y   + E   E + 
Sbjct: 302 LFTLQTVNSNGT-------SDRTTSPEEMQTQPYIAMDWEPDMKRRY---YDEVEAEGYV 351

Query: 667 KNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLV 726
           K+  V    +  P+ L  C++ F   E L  E+ WYC  CK+ + A+KKLDLW LPEVL+
Sbjct: 352 KHDCVGYMLKKSPVQLKECIKLFTTVETLEKENPWYCSSCKQHQLATKKLDLWMLPEVLI 411

Query: 727 IHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVAN-KNSSRRQL--YELYALTNHYGGMG 783
           IHLKRFS+S+  + KL+T V FPI D + +++V   KN S   L  Y+L A++NHYGGM 
Sbjct: 412 IHLKRFSFSKISREKLDTLVQFPIRDLDFSEFVIKPKNESSPDLYKYDLIAVSNHYGGMR 471

Query: 784 SGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            GHYT      D  +W+ FDD+ +SP+NE+ ++S AAYVLFY+R
Sbjct: 472 DGHYTTFACNKDSGQWHYFDDNSVSPVNENQIESKAAYVLFYQR 515


>gi|348517076|ref|XP_003446061.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 11-like
           [Oreochromis niloticus]
          Length = 1009

 Score =  249 bits (635), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 194/612 (31%), Positives = 283/612 (46%), Gaps = 141/612 (23%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W+  W ++V       TGD +S            +  P  IDN++L  D  +        
Sbjct: 44  WFDQWKEFVE------TGDQNS------------TSFPGQIDNAELFEDLDSY------H 79

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + D L+E  D++L+P E W++L +WYG     P L RKV+   L  T L VEVYP+ + L
Sbjct: 80  LKDRLVEDEDFVLVPAEAWHKLLAWYGIADDQPPLERKVVD--LPST-LKVEVYPIEIFL 136

Query: 118 LVMPRGE-CSTIRISKKETIGELHRRACSIFYLNLEQIC-IWDYYGHRKHALMNDMDRTL 175
            +    E   T + S+ ++I  + R  C  F +     C +W                  
Sbjct: 137 CLHSNMENVITAKFSRTDSIHSIQRAMCQAFSVPPGSECRLW---------------MKS 181

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            D++ +  +++ + VLD      C SS            +V++E    + +  G W +S+
Sbjct: 182 SDSSCERLRNVHMSVLDA-----CLSS----------GMTVIME----TRNADGTWPSSR 222

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
                +S E           + D+  G  GV          GL NLGNTCFMNSA+QCL 
Sbjct: 223 PQIMRNSVE-----------EQDSYRGQPGVC---------GLTNLGNTCFMNSALQCLS 262

Query: 296 HTPEFARYFRED-YRREINWQNPLGMV--------------------------------- 321
           +TP    YF ++ Y  E+N+ NPLGM                                  
Sbjct: 263 NTPPLTEYFLQNSYVDELNFTNPLGMKGEIAEAYADVIKQMWSGRHYSVVPRVFKTKVGH 322

Query: 322 --------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELL+FLLDGLHEDLNRVK+K YI+ +DADGR D+EVA+E W NH+ 
Sbjct: 323 FASQFLGYQQHDSQELLSFLLDGLHEDLNRVKNKEYIELRDADGRQDQEVAEEAWRNHLR 382

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDS+IVD   G +KSTLVCP C+KVSVTFDPF YLS+PL  +  R M V   + D  A 
Sbjct: 383 RNDSVIVDTFHGLFKSTLVCPECHKVSVTFDPFCYLSVPLPVSKERVMEVFFVSLDPYAK 442

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDD 487
           P  + V VPK G+  DL   L  + S+  + ++ VA++ NH   +  +    SLS I D 
Sbjct: 443 PVQHRVVVPKAGKVSDLCSALSEMTSVPPT-QMVVADVFNHRFYKIYNMGE-SLSAILDR 500

Query: 488 DHLAAYRVPKLVKKA-----VFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVI 542
           D +  Y +  L ++      + L L  R   ++ G+   +     +G PL+ ++ R    
Sbjct: 501 DDIFVYELSVLEEQPEEQVLLALYLRERSHYRDYGSGGGSYGTSLFGHPLLLNVPRSSCS 560

Query: 543 SSGKIQSTVQRM 554
                   +QR+
Sbjct: 561 QEALYNLFLQRL 572



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 79/194 (40%), Positives = 118/194 (60%), Gaps = 7/194 (3%)

Query: 638 TSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTE-PLSLYTCLEAFLREEPLV 696
           T   V +DW   + +++   + EN  E +   P  +  +    + L  C+E F   E L 
Sbjct: 767 TQPYVAIDWEPDMKKRF---YNENEAEKYVKDPSMEVPQQHMTVQLQQCIELFTTVETLE 823

Query: 697 PEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLT 756
            E+ WYCP CK+ + A+KKLDLW LPEVL+IHLKRFSY++  + KL++ V FP+ D + +
Sbjct: 824 EENPWYCPVCKKHQLATKKLDLWSLPEVLIIHLKRFSYTKFTREKLDSIVEFPLRDLDFS 883

Query: 757 KYVANKNSSRRQ---LYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINED 813
            ++  K  S  +    Y+L A++NHYGG+  GHYT + K  D  +WY FDDS ++   ED
Sbjct: 884 GFLLRKTLSSEEPPSRYDLIAVSNHYGGLRDGHYTTYAKNKDNGQWYYFDDSKVTYATED 943

Query: 814 DVKSAAAYVLFYRR 827
            + ++AAYVLFY+R
Sbjct: 944 QIVTSAAYVLFYQR 957


>gi|326669890|ref|XP_002663119.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 11 [Danio rerio]
          Length = 990

 Score =  249 bits (635), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 194/612 (31%), Positives = 274/612 (44%), Gaps = 141/612 (23%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W+  W +YV+      TGD +S            +  P  IDN++L  D  +        
Sbjct: 44  WYDQWKEYVD------TGDQNS------------TSYPGKIDNTELYEDLDSY------R 79

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L E  D+IL+P E W +L SWY      P L RKV+   L  T + VEVYP+ + L
Sbjct: 80  LKERLTENDDFILVPAEAWRKLLSWYDMMDNQPPLERKVVD--LPST-VKVEVYPVEIYL 136

Query: 118 LVMPRGECS-TIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLD 176
            +    E + T + S+ + I  +H++                    R+H    D+  T +
Sbjct: 137 CLSSNLESTVTAQFSRADKIHAIHQKI-------------------RQHF---DVSETAE 174

Query: 177 DANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKG 236
                   D   E L N+N T   S +           +V++E   +     G W  S+ 
Sbjct: 175 SRLWMRSVDTSSERLRNLNMTVLDSCL-------SSGMTVIMEIRNAD----GTWPTSRP 223

Query: 237 TSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVH 296
               +S+            D D+  G  GV          GL NLGNTCFMNSA+QCL +
Sbjct: 224 QIMRNSA------------DEDSYRGPPGVC---------GLTNLGNTCFMNSALQCLSN 262

Query: 297 TPEFARYFRED-YRREINWQNPLGMV---------------------------------- 321
           TP    YF ++ Y  E+N+ NPLGM                                   
Sbjct: 263 TPPLTEYFLKNLYLEELNFSNPLGMKGEIAEAYADVIKQMWSGRHYSVVPRVFKTKVGHF 322

Query: 322 -------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIAR 368
                        ELL+FLLDGLHEDLNRVK K YI+ +DADGRPD+EVA+E W NH+ R
Sbjct: 323 ASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYIELRDADGRPDQEVAEEAWRNHLRR 382

Query: 369 NDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALP 428
           NDS+IVD   G +KSTLVCP CNKVSVTFDPF YLS+PL  +  R M V   + D +A P
Sbjct: 383 NDSVIVDTFHGLFKSTLVCPECNKVSVTFDPFCYLSVPLPVSKERVMEVFYVSLDPTAKP 442

Query: 429 STYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDD 488
           + Y + VPK GR  DL   L     +  + ++ V ++ NH   R       SLS I D D
Sbjct: 443 TQYRLIVPKAGRVLDLCTALSQATGVPPN-QMTVTDVFNHRFYRIYQSDE-SLSCILDRD 500

Query: 489 HLAAYRVPKLV------KKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVI 542
            +  Y++          +  + + +  R   ++ G+   +     +G PL  S+ R    
Sbjct: 501 DIFVYQLSSGCVDEDSDEVVLSIYMRERSHYRDYGSGSNSYGTSLFGHPLRMSVPRAHCT 560

Query: 543 SSGKIQSTVQRM 554
                Q  ++R+
Sbjct: 561 PEHLYQLLLERL 572



 Score =  155 bits (392), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 77/190 (40%), Positives = 119/190 (62%), Gaps = 7/190 (3%)

Query: 642 VYVDWSQKLLEKYNTHFLENLLEVF-KNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
           + +DW   + +KY   + EN  E + K+  +    +   + L  C+E F   E L  E+ 
Sbjct: 761 IAIDWDPDMKKKY---YNENEAEKYIKHQSMDVPHQQTTVQLQECIELFTTVETLEEENP 817

Query: 701 WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
           WYCP CK  + A+KKLDLW LPEVL+IHLKRFSY++  + KL+T V FP+ D + + ++ 
Sbjct: 818 WYCPTCKRHQLATKKLDLWSLPEVLIIHLKRFSYTKYSREKLDTIVEFPLRDLDFSGFLL 877

Query: 761 NK--NSSRRQL-YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKS 817
            K  NS+     Y+L +++NHYGG+  GHYT++ +  D  +WY FDDS ++   E+ + +
Sbjct: 878 KKTVNSTEPPCPYDLISVSNHYGGLRDGHYTSYARNKDNGQWYYFDDSKVTYAREEQIVT 937

Query: 818 AAAYVLFYRR 827
           +AAY+LFY+R
Sbjct: 938 SAAYLLFYQR 947


>gi|432959676|ref|XP_004086360.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 11-like [Oryzias
           latipes]
          Length = 1014

 Score =  246 bits (628), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 196/604 (32%), Positives = 282/604 (46%), Gaps = 144/604 (23%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W ++        TGD +S            S  P  IDN++L  D  +        
Sbjct: 44  WFEQWREFAE------TGDQNS------------SSFPGQIDNTELFEDLDSY------R 79

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L+E  D++L+P E W++L +WYG   G P L RKV+   L  T L VEVYP+ + L
Sbjct: 80  LKERLVENEDFVLVPAEAWHKLLAWYGMVDGQPPLERKVVD--LPST-LKVEVYPVEIFL 136

Query: 118 LVMPRGE-CSTIRISKKETIGELHRRACSIFYLNLEQIC-IWDYYGHRKHALMNDMDRTL 175
            +    +   T + S+ + I  +    C  F +     C +W                  
Sbjct: 137 CLHSNMDNVITDQFSRTDNIHAIQTAMCRAFSVPPGSECRLW---------------MKS 181

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            D++ +  +++ + VLD      C SS            +V++E   S     G W +S+
Sbjct: 182 SDSSCERLRNVHISVLDA-----CLSS----------GMTVIMEMRNSD----GTWPSSR 222

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
                +S E           + D+  G  GV          GL NLGNTCFMNSA+QCL 
Sbjct: 223 PQIMRNSVE-----------EQDSYRGQPGVC---------GLTNLGNTCFMNSALQCLS 262

Query: 296 HTPEFARYFRED-YRREINWQNPLGMV--------------------------------- 321
           +TP    YF ++ Y  E+N+ NPLGM                                  
Sbjct: 263 NTPPLTEYFLQNSYLDELNFTNPLGMKGEIAEAYADVIKQMWSGRHYSVVPRVFKTKVGH 322

Query: 322 --------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELL+FLLDGLHEDLNRVK+K YI+ +DADGRPD+EVA E W NH  
Sbjct: 323 FASQFLGYQQHDSQELLSFLLDGLHEDLNRVKNKEYIELRDADGRPDQEVAGEAWRNHRR 382

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDS+IVD   G +KSTLVCP C+KVSVTFDPF YLS+PL  +  R M V     D  A 
Sbjct: 383 RNDSVIVDKFHGLFKSTLVCPECHKVSVTFDPFCYLSVPLPVSKERVMEVFFVFLDPHAK 442

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDD 487
           P  + V VPK G+  DL   L ++ S+  + ++ VA++ NH   +  +    SLS I D 
Sbjct: 443 PVQHRVVVPKAGKVSDLCAALSDMTSVAPT-QMVVADVFNHRFYKIYNADE-SLSCILDR 500

Query: 488 DHLAAYRV---PKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLV-----SSISRD 539
           D +  Y +   P+  +  + L L  R   ++ G+  ++     +G PL+     SS SR+
Sbjct: 501 DDIFVYELAQGPQEEQVLLALYLRERSHYRDYGSGSSSYGTSLFGHPLLLNVPQSSCSRE 560

Query: 540 DVIS 543
           ++ S
Sbjct: 561 ELYS 564



 Score =  161 bits (407), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 80/197 (40%), Positives = 123/197 (62%), Gaps = 7/197 (3%)

Query: 635 SSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF-KNGPVTKKARTEPLSLYTCLEAFLREE 693
           S S+   V +DW   + +++   + EN  E + K+  +    +   + L  C+E F   E
Sbjct: 773 SFSSQPYVAIDWDPDMKKRF---YNENEAEKYVKHSSMEVPQQQATVQLQECIELFTTVE 829

Query: 694 PLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDF 753
            L  E+ WYCP CK+ + A+KKLDLW LPEVL+IHLKRFSY++  + KL++ V+FP+ D 
Sbjct: 830 TLEEENPWYCPVCKKHQLATKKLDLWSLPEVLIIHLKRFSYTKFTREKLDSIVDFPLRDL 889

Query: 754 NLTKYVANKNSSRRQ---LYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPI 810
           + + ++  K+ S  +    Y+L A++NHYGG+  GHYT++ K  D  +WY FDDS ++  
Sbjct: 890 DFSDFLLRKSLSSEEPPSRYDLIAVSNHYGGLRDGHYTSYAKNKDNAQWYYFDDSKVTYA 949

Query: 811 NEDDVKSAAAYVLFYRR 827
           +ED + + AAYVLFY R
Sbjct: 950 SEDQIMTNAAYVLFYHR 966


>gi|426347291|ref|XP_004041287.1| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase
            32 [Gorilla gorilla gorilla]
          Length = 1499

 Score =  245 bits (625), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 234/834 (28%), Positives = 362/834 (43%), Gaps = 159/834 (19%)

Query: 18   GDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAED-----PGAGPEIVDTLLEGRDYI 72
            G   ++L H N       ++P  IDN  LV     +       G   +    L+ GRDY 
Sbjct: 507  GANGNILLHLNP------QKPGAIDNQPLVTQEPVKATSLTLEGGRLKRTPQLIHGRDYE 560

Query: 73   LLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELA-VEVYPLRLQLLVMPRGECSTIRIS 131
            ++P+ VW  L+ WYG    L R VI +  S+T++  +E++P  L  L   R + +T R  
Sbjct: 561  MVPEPVWRALYHWYGANLALPRPVIKN--SKTDIPELELFPRYLLFL---RQQPAT-RTQ 614

Query: 132  KKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMD--QDILVE 189
            +      +   +  +F  +L +  +        HAL N +      A    D  Q++   
Sbjct: 615  QSNIWVNMGMMSLRMFPQHLPRGNL--RMQQEYHALTNPIGMKGHMAKCYGDLVQELWSG 672

Query: 190  VLDNV---NGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEIS 246
               NV      NC + + D    E      L    K  L I      SK TS        
Sbjct: 673  TQKNVAPLKLRNCLTLLDD----ENHRLEYLKIQDKQHLVIE---VRSKDTS-------- 717

Query: 247  TSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-- 304
              P   S   + + +    V     + GL+   NLGNTCFMNS+IQC+ +T    +YF  
Sbjct: 718  -WPEEMSFIANSSKIDRHKVPIEKGATGLS---NLGNTCFMNSSIQCVSNTQPLTQYFIS 773

Query: 305  -REDYRREINWQNPLGMV------------------------------------------ 321
             R  Y  E+N  NP+GM                                           
Sbjct: 774  GRHLY--ELNRTNPIGMKGHMAKCYGDLVRELXSGTQKSVAPLKLQWTIAKYAPRFNGFQ 831

Query: 322  -----ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDV 376
                 ELLAFLLDGLHEDLNRV  KPY++ KD+DGRPD EVA E W NH+ RN SI+VD+
Sbjct: 832  QQDSQELLAFLLDGLHEDLNRVHEKPYVELKDSDGRPDWEVAAEAWDNHLRRNRSIVVDL 891

Query: 377  CQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVP 436
              GQ +S + C  C  +SV FDPF +LSLPL   +   + +TV   DG+  P  Y + + 
Sbjct: 892  FHGQLRSQVKCKTCGHISVRFDPFNFLSLPLPMDSYMHLEITVIKLDGTT-PVRYGLRLN 950

Query: 437  KHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF-LDDPLISLSTIKDDDHLAAYRV 495
               +   L + L ++C L  +E++ +AE+   +I+ F  D+  + LS       L A+ +
Sbjct: 951  MDEKYTGLKKQLSDLCGL-NAEQILLAEVHGSNIKNFPQDNQKVRLSV---SGFLCAFEI 1006

Query: 496  P------------------KLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSIS 537
            P                     K  +    ++ L  Q+       ++   +G PL+   +
Sbjct: 1007 PVPASPISASSSTQTDGFINTEKNVIMRTELYFLSSQK-------NRPSLFGMPLIVPCT 1059

Query: 538  ----RDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNI 593
                + D+  +  IQ  V R+ SP   +E+  HA   D        D  G  +  +   +
Sbjct: 1060 VHTRKKDLYDAVWIQ--VSRLASPLPPQEASNHAQDCD--------DSMGYQYPFTLRVV 1109

Query: 594  AKEDASSSKAVTLPNLPLQLVDESNVCFDLSVE-GDKTIRIPSSSTSIVVYVDWSQKLLE 652
             K+  S +                  C    ++ G+    I ++     + VDW    L 
Sbjct: 1110 QKDGNSCA-----------WCPWYRFCRGCKIDCGEDRAFIGNA----YIAVDWDPTALH 1154

Query: 653  -KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQ 711
             +Y T   E +++  ++   +++A+ EP++L +CL AF  EE L   +M+YC +CK    
Sbjct: 1155 LRYQTS-QERVVDEHESVEQSRRAQAEPINLDSCLRAFTSEEELGENEMYYCSKCKTHCL 1213

Query: 712  ASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSS 765
            A+KKLDLWRLP +L+IHLKRF +      K +  V FP   F+ + ++  ++ +
Sbjct: 1214 ATKKLDLWRLPPILIIHLKRFQFVNGRWIKSQKIVKFPRESFDPSAFLVPRDPA 1267


>gi|440791317|gb|ELR12560.1| putative ubiquitin carboxylterminal hydrolase 11, putative
           [Acanthamoeba castellanii str. Neff]
          Length = 1170

 Score =  244 bits (622), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 187/625 (29%), Positives = 288/625 (46%), Gaps = 104/625 (16%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV----------- 321
           G TGL NLGNTCFMNSA+QCL +T    R+F  + +  EIN  NPLGM            
Sbjct: 339 GATGLHNLGNTCFMNSALQCLSNTTPLLRFFLNNAHLAEINPTNPLGMKGELAKKFGELL 398

Query: 322 ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                               ELL+F+LDG+HEDLNR+  KPY +
Sbjct: 399 VNLWSGKYTTVVPREFKSVLSKFAPQFAGYQQHDSQELLSFVLDGIHEDLNRIIQKPYTE 458

Query: 346 SKDADGRPDEEV-ADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLS 404
             + +   + +  A   W  H+ RN+S++VD   GQ KST+VC  C  VS+TFDPF++LS
Sbjct: 459 KLEFENSDNNDAQAQMSWDTHLMRNNSVVVDHFHGQLKSTVVCQHCGHVSLTFDPFVFLS 518

Query: 405 LPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAE 464
           LP+ +   R + V +F  D +  P  Y V V K G  +DL   L  +  +   E L +AE
Sbjct: 519 LPVPSKNQRIINVVLFWRDRN--PVKYGVRVSKMGTIKDLKDRLARLVDVG-PERLVMAE 575

Query: 465 IQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQ 524
           I  ++ + F       L  I+  D + AY V     + +       + E+E  AA  +  
Sbjct: 576 I--YTFRPFKIPDAKPLFDIRSSDLIFAYEVIPPGAEVM-------VPERETKAAAVSPT 626

Query: 525 WKAYGTPLVSSISRDDVISSGKIQ------------STVQRMLSPFLKKES---LMHADS 569
            KA   P+       DV++  + Q            ST       F+ + +   + H   
Sbjct: 627 AKAT-EPM-------DVVTEAQPQQESAPAPQPAPASTPSAPTFKFVNQIAHVPVFHRRF 678

Query: 570 FDPSS-------MVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFD 622
           + P         ++ + D +   H N   ++  E  +   A+ LP+L L LVD       
Sbjct: 679 YSPKKFDLFGRPLILSFDRTTTTH-NQLHHMIFERVARYVALDLPSLNLSLVDAMGYGLG 737

Query: 623 LSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEP--- 679
            SV  D  +       ++ + +DW + +L     +  E     F+     KK   +    
Sbjct: 738 HSVPRDDAL-FEFDDGNVGIAIDWDKDVLNNIPVNKKE-----FEEHESLKKTEADEELC 791

Query: 680 LSLYTCLEAFLREEPLVPEDMWYCPQCKERR-QASKKLDLWRLPEVLVIHLKRFSYSRSM 738
           +SL  CL  F  +E L     WYC  CK     A K++D+W+ P VL++HLKRF Y+   
Sbjct: 792 VSLDDCLRMFTADELLEDGSPWYCSVCKATGGSAQKRIDVWKCPPVLIVHLKRFQYTHVF 851

Query: 739 KHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR 798
           + K+ T V+FP+   +L+ YV   + ++  +Y+LYA++NH G +GSGHYTA  K      
Sbjct: 852 RDKVGTKVDFPVTGLDLSPYVNQLDPAKPPIYDLYAVSNHIGSLGSGHYTAFTKNPKTKT 911

Query: 799 WYNFDDSHISPINEDD--VKSAAAY 821
           W+   DS +  + +++  +  +AA+
Sbjct: 912 WFKMSDSTVVKVEKEENVITESAAF 936



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 70/151 (46%), Gaps = 37/151 (24%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSS---ASKRPSGIDNSDLVNDATAEDPG- 56
           WWQ W  YV  ++ N+  DG +   H  +  +S   A +RP  IDN++L+ D +A   G 
Sbjct: 62  WWQLWQHYVGWNEGNSDDDGGTEGHHHGTEAASHHAARQRPGPIDNTELLEDGSATVKGP 121

Query: 57  ----------------------AGPE----------IVDTLLEGRDYILLPQEVWNQLHS 84
                                 AG +          +   L++  DY L P  V+  ++S
Sbjct: 122 GEESDSGEDSEEEEERKSNGGAAGAKKASKQPQEESLRRGLVKDVDYTLFPSSVFRHIYS 181

Query: 85  WYGGGPTLARKVISSGLSQTELAVEVYPLRL 115
           WYG  P + RKVI+ G+ Q +L VE++P+ L
Sbjct: 182 WYGCSPVVGRKVITVGIFQ-KLQVELHPIVL 211


>gi|241714784|ref|XP_002413525.1| ubiquitin carboxy-terminal hydrolase, putative [Ixodes scapularis]
 gi|215507339|gb|EEC16833.1| ubiquitin carboxy-terminal hydrolase, putative [Ixodes scapularis]
          Length = 913

 Score =  241 bits (615), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 174/554 (31%), Positives = 253/554 (45%), Gaps = 122/554 (22%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV  D  +  G G              +  P  IDNS L+ +  +       E
Sbjct: 50  WFKQWKKYVGYDTWDVCGIGEQ------------TTHPGPIDNSPLLKEDNSG------E 91

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
             D L++  DY+LLPQE W+++ SWYG   G   L R+VI  G+         + L    
Sbjct: 92  TKDHLIDELDYVLLPQEAWDKMVSWYGLTPGQDPLPRRVIEFGMFVKHCKAGTFSLASFY 151

Query: 118 LVMPRG--ECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRT 174
           L +     +C T + SK +TI  + +   ++F +  E +  +W+ Y    +  + D  RT
Sbjct: 152 LCLSTNLEQCITKKFSKVDTIDRIEKEMRNLFSIPKEKETRLWNRYSSNTYEHLFDRTRT 211

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS 234
           + +A +   Q I++E  ++                                   G WS  
Sbjct: 212 VQEAGLYHGQVIMIEEQND----------------------------------DGSWS-R 236

Query: 235 KGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCL 294
           K  +R++S+      N  +  +S N     G    G++ GL GL NLGNTCFMN+A+QC+
Sbjct: 237 KSATRSYSA---VGNNYGNYSNSCNYELHGG----GSTPGLCGLANLGNTCFMNAAVQCM 289

Query: 295 VHTPEFARYFRED-YRREINWQNPLGMV-------------------------------- 321
            +TP    YF E  + +E+N  NPLGM                                 
Sbjct: 290 SNTPPLTEYFMEGRHLQELNHSNPLGMKGEVAKSYADLIRVMWSGNCSSTIPRPFKASGL 349

Query: 322 ----------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANH 365
                           EL+AFLLDGLHEDLNRV HKPYI+ +D DGRPDE VA E W N+
Sbjct: 350 RGFAPQFSGFQQQDCQELMAFLLDGLHEDLNRVIHKPYIELRDPDGRPDELVAQEAWHNY 409

Query: 366 IARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGS 425
             RN+SIIVD+  G  KSTLVCP C K+SVTFDPF YLSLPL     + + + +  +D  
Sbjct: 410 QLRNNSIIVDIFHGLLKSTLVCPDCQKLSVTFDPFCYLSLPLPIRKEKLLELVLVRADPH 469

Query: 426 ALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLD--DPLISLST 483
             P    VTV K    +D+   +  +  +  ++ L V E+ NH   R L   DP+ +L  
Sbjct: 470 EKPLKMKVTVIKMSSIQDVCSSVSRLVGIP-ADRLLVTEVHNHRFLRVLQNTDPIDTLDR 528

Query: 484 IKDDDHLAAYRVPK 497
           ++    +  Y +P+
Sbjct: 529 ME----VFVYELPQ 538



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 81/184 (44%), Positives = 115/184 (62%), Gaps = 2/184 (1%)

Query: 644 VDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYC 703
            DW  ++  ++    + N + V ++    + A+ + L L  CLE F   E L  ED W+C
Sbjct: 731 ADWLPQVRARFFKDHVTNDMVVHESMHQRQVAKRQ-LQLRECLELFTTTEKLGAEDPWFC 789

Query: 704 PQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKN 763
           P C+  +QA+KK DLW LP VL+IHLKRFSY+R  + K++T V FPI +  +  Y+ N+ 
Sbjct: 790 PSCRSHKQATKKFDLWSLPRVLIIHLKRFSYNRFWRDKIDTLVEFPISNLRMHDYIINQK 849

Query: 764 SSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVL 823
                +Y+L A+ NHYGGMG GHYTA+ K  +  +WY FDD+ +SP  ED+V S AAYVL
Sbjct: 850 HG-PAVYDLIAVANHYGGMGGGHYTAYAKNKETEQWYYFDDNSVSPATEDNVVSKAAYVL 908

Query: 824 FYRR 827
           FY +
Sbjct: 909 FYAK 912


>gi|384500578|gb|EIE91069.1| hypothetical protein RO3G_15780 [Rhizopus delemar RA 99-880]
          Length = 779

 Score =  240 bits (613), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 186/610 (30%), Positives = 288/610 (47%), Gaps = 136/610 (22%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV----------- 321
           GL GL NLGNTC+MNSAIQCL +TP   ++F +D Y+++IN  NPLG+            
Sbjct: 243 GLHGLKNLGNTCYMNSAIQCLSNTPLLTQWFLKDIYKKDINRSNPLGLQGELAGAYAELV 302

Query: 322 ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E L FLLDGLHED+NR+  KPY++
Sbjct: 303 KSIWSTNNMTISPFAFKKIFEKFNSHFSGYEQQDSQEFLGFLLDGLHEDMNRISDKPYVE 362

Query: 346 SKD-ADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLS 404
             D  D   + E+A  +W +H ARNDSIIVD+ QGQ+K+                     
Sbjct: 363 IPDFEDESKENEIASHFWEHHKARNDSIIVDLFQGQFKNQ-------------------- 402

Query: 405 LPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAE 464
                                   + +T+ + K     DL Q + +   LK  + + + +
Sbjct: 403 ------------------------AKFTIYLRKGSTIHDLKQEIRS--KLKDIQHILITQ 436

Query: 465 IQNHSIQRFLDDPLISLSTIKDDDHLAAYRVP---KLVKKAVFLQLIHRLQEQEPGAAQT 521
           I    I +   D    LS I   D +  Y +P      +K     + + L +Q      T
Sbjct: 437 IYQAKICKIFKDNDEPLSNISPIDIIYVYEIPCSPSNSEKWTLFPIYYSLLDQ------T 490

Query: 522 TSQWKAYGTPLVSSISRDDVISS--GKIQSTVQRMLSPFLKKES--LMHADSFDPSSMVT 577
            +    +G PLV ++++ D        I + +QR  S  L KE   L     F   +   
Sbjct: 491 DNHLCTFGYPLVLALNKSDSDPDIHKFIVNHIQRYTSKELDKEQGPLFKPRLFSSKNTYD 550

Query: 578 TVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSS 637
              P   + ++ S    ++ ++         + LQ     +  FD+         IP  +
Sbjct: 551 NTFPLIRSFADISPQFQQDPSTIQSG---QGMILQWA--MDRAFDIFGS------IPKKN 599

Query: 638 TSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVP 697
           +S        Q+ +   NT    +L   F   P T+ ++ E L+L  CL+ F++EE L  
Sbjct: 600 SS--------QRAV---NT----DLWRKFSVLPATR-SKQETLTLEDCLKEFIKEEQLSK 643

Query: 698 EDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTK 757
           +D+WYCP+CK +++A+KK D+WRLPE++VIHLKRFS  R   +K+  +V+FPI + ++T 
Sbjct: 644 DDLWYCPRCKVQQRATKKFDIWRLPEIMVIHLKRFSQVRIWGNKVNIYVDFPISELDMTD 703

Query: 758 YVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKS 817
           YV   ++    +Y+LYA+ NHYGG+G GHYTA  + +   +WY+FDD+ ++ I+   VK+
Sbjct: 704 YVLG-STDLSLIYDLYAVDNHYGGLGGGHYTACAQNIQNKQWYSFDDTSVNKIDVSKVKT 762

Query: 818 AAAYVLFYRR 827
            AAY+LFY+R
Sbjct: 763 NAAYLLFYKR 772


>gi|219123565|ref|XP_002182093.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406694|gb|EEC46633.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1183

 Score =  237 bits (605), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 193/672 (28%), Positives = 307/672 (45%), Gaps = 130/672 (19%)

Query: 253  SARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRRE 311
            +A +++ T+GS  +     S G  GL NLGNTCFMNSA+QCL H     R F  + Y  +
Sbjct: 538  AATNTEETVGSPVLPP--PSYGRVGLHNLGNTCFMNSALQCLSHATPLTRSFLSNLYLID 595

Query: 312  INWQNPLG------------------------------------------------MVEL 323
            +N  NPLG                                                  E 
Sbjct: 596  VNVDNPLGSGGNLAHAYGAVLKDLWMKSNTTSLSPTALKRAIAMFAPRFAGCLQHDAQEF 655

Query: 324  LAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVAD-EYWANHIARNDSIIVDVCQGQYK 382
            LA+LLDGLHEDLNRV+ KPY++  D     +  VA    W     R+DS+++D   GQ++
Sbjct: 656  LAYLLDGLHEDLNRVRQKPYVEMPDITQGQNMAVAGARAWEALRRRDDSLVMDTFYGQFR 715

Query: 383  STLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCR 442
            ST VCP C +VSV+FD F ++SL +  +   T++V VF    S   + Y V++P+     
Sbjct: 716  STCVCPRCQRVSVSFDAFNHVSLQIPTSVNATISVGVFVMGESGRWTRYGVSLPRTATTA 775

Query: 443  DLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKA 502
             L   L  +C  K    L + E+ +++I R +D+   S+  +  +  LAA+ V  L   A
Sbjct: 776  TLRLHLTELCGGKDLARLVLLEVFHNAIVRVVDE-TKSVGQLHPNTVLAAFDVDPLTGNA 834

Query: 503  ---VFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFL 559
                 +   H+L  ++        Q + +G P + S S       GK  +  Q     + 
Sbjct: 835  DPTFHVCASHKLLPED--GDNNLDQPELFGFPFMISFS-------GKT-TCRQAWEHLWS 884

Query: 560  KKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNV 619
            K + L+   S +P S              S+ ++ +      +   LP  P+  +D +  
Sbjct: 885  KVQHLVAHGSDEPDS--------------SARDLLQIHLHDHRNQRLPVFPVANLDVTLA 930

Query: 620  CFDLSVEGDKTIRIP--------------SSSTSIVVYVDW------------SQKLLEK 653
              D +++ + T  +P              S+   I  +++W             +K LE 
Sbjct: 931  EMDNAMDTECTSALPRDSDLRLIDLLGPKSTDNYIFFWLEWQESPDVVLGSVPGEKGLE- 989

Query: 654  YNTHFLENLLEVFKNGP----VTKKARTEPL----SLYTCLEAFLREEPLVPEDMWYCPQ 705
              +   E     F++        K+ R + L    +L  C E F++ E L   +MWYC  
Sbjct: 990  --SRIDEERFLAFESDASWLLCQKRQRAQSLAKGVTLDECFETFIQPERLDDNNMWYCSN 1047

Query: 706  CKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKH-KLETFVNFPIHDFNLTKYVANKNS 764
            CK+  +A K ++LWRLP VLV+HLKRF +   ++  KLET V+FP+   +++K+  + +S
Sbjct: 1048 CKDHVRAMKTMELWRLPNVLVVHLKRFEFRNVLRRDKLETLVDFPLDGLDMSKHCGSYSS 1107

Query: 765  SRRQ------LYELYALTNHYGGMGSGHYTAHIKLLDE-----NRWYNFDDSHISPI-NE 812
               +       Y+L+A+TNH+G MG GHYTA  +  DE       W  FDDS +  + +E
Sbjct: 1108 RSFEDEHVPATYDLFAVTNHFGRMGFGHYTAFARRWDEEGIHNEHWALFDDSSVQEVTDE 1167

Query: 813  DDVKSAAAYVLF 824
             ++ S+AA+ +F
Sbjct: 1168 RNIVSSAAWWIF 1179


>gi|440794108|gb|ELR15279.1| hypothetical protein ACA1_220180 [Acanthamoeba castellanii str.
           Neff]
          Length = 1296

 Score =  237 bits (605), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 180/589 (30%), Positives = 273/589 (46%), Gaps = 84/589 (14%)

Query: 1   WWQHWIDYVNQDQPNNT---GDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGA 57
           W + W  YV+ D+   T    D           G    K P+ IDNS L+ D   +  G 
Sbjct: 45  WLKQWKAYVSFDEETTTPAAADEGGGDGAAEGTGEQPRKPPNSIDNSVLLKDPGFKSKGN 104

Query: 58  GPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQL 117
            P I    +EG D+IL+PQ+ W  L+ WYGGGP LAR+VI  G     L VEV+PL L  
Sbjct: 105 EPVIKTKAIEGVDFILIPQKPWAYLYKWYGGGPELAREVIGDGKEGRALKVEVFPLALTF 164

Query: 118 -------LVMPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMND 170
                   + P      + +SKK T+G L    C    L+     +W+Y  +    L+ +
Sbjct: 165 KNTNTEGQINPFSAIEVV-VSKKATVGYLKSLVCRKMELDSAHTRVWNYVKN-TGKLIKE 222

Query: 171 MDRTLDDANIQMDQDILVEV-LDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAG 229
            + TL++A +   Q +L+EV LD+        S   +G  ++K+S  + +  K +  IA 
Sbjct: 223 ENVTLEEAKLVDGQSLLIEVRLDD-------GSWPRDGIKKRKSSGSVKD--KLADGIAD 273

Query: 230 GWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNS 289
                K  S +H   + +      +               G S G+ GL+NLGNTCF+NS
Sbjct: 274 EHQPRKYQSGSHRP-VGSGGGSGGSSGGYGGSSGDVKARPGTSKGVCGLVNLGNTCFLNS 332

Query: 290 AIQCLVHTPEFARYFRED-YRREINWQNPLGMV--------------------------- 321
           AIQCL +T     +F  D Y+ +IN  NPLGM                            
Sbjct: 333 AIQCLSNTVALTEFFLSDAYKADINKSNPLGMKGQLAECYAGVVGRLLGRGTAQPQTLHR 392

Query: 322 -----------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARND 370
                      E LAFLLDGLHEDLNRV +KPY++ K++DGR DEEV+ E W  H+ RN 
Sbjct: 393 QFNGFSQHDAQEFLAFLLDGLHEDLNRVLNKPYVEIKESDGRADEEVSREAWECHLKRNR 452

Query: 371 SIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPST 430
           S+IVD+ Q +           K      PFMY+SLP+   + R + + +  ++    P  
Sbjct: 453 SVIVDLFQAE---------VWKGEHHVRPFMYISLPMPPESDRLIDIILIPNEPHRKPVM 503

Query: 431 YTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHL 490
           Y++   K  R + L + L     L +  ++ + +I++H I  F+ D   S++T + +   
Sbjct: 504 YSIKCAKSARVQILKEKLEEYSGLSR-RKISMVDIEDHYIHGFIPDAR-SVATFRTNATA 561

Query: 491 AAYRV--PKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSIS 537
            A+    P   K+A+ +Q++HR ++            +A+G P V  +S
Sbjct: 562 FAFETVGPVDPKQALRVQILHRRRK---------IPRQAFGMPFVMYLS 601



 Score =  161 bits (407), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 80/209 (38%), Positives = 119/209 (56%), Gaps = 25/209 (11%)

Query: 641  VVYVDWSQKLLEKY--------------NTHF---------LENLLEVFKNGPVTKKART 677
             + VDW  KLL ++                HF         +   +E  ++    KK   
Sbjct: 838  TIAVDWDPKLLREFLSIEKAEASLLPPSRLHFFSPKSSASLMSAEIEDHESVVTNKKQAK 897

Query: 678  EPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRS 737
              L L  C   F   E L   D WYCP+CK+ RQA KK +LW++P+ LVIHLKRF Y+R 
Sbjct: 898  RRLCLDDCFRLFCMNEQLGENDQWYCPKCKDFRQARKKFELWQMPQTLVIHLKRFQYTRF 957

Query: 738  MKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDEN 797
             + K+ TF +FP+   +L++YV  +N ++  +Y+LYA+ NH GG+G GHYTA      +N
Sbjct: 958  SRDKIITFCDFPLTGLDLSEYV--QNCTQSPIYDLYAVANHQGGLGGGHYTAFGLNARDN 1015

Query: 798  RWYNFDDSHISPINEDDVKSAAAYVLFYR 826
            RWY+F+D   + +++D V+++AAYVLFY+
Sbjct: 1016 RWYHFNDGSTTAVSDDAVRTSAAYVLFYK 1044


>gi|145524463|ref|XP_001448059.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124415592|emb|CAK80662.1| unnamed protein product [Paramecium tetraurelia]
          Length = 975

 Score =  237 bits (604), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 184/684 (26%), Positives = 307/684 (44%), Gaps = 124/684 (18%)

Query: 230 GWSASKGTSRNHSSEISTSPNLASARDSDN--TLGSSGVTTRGASVGLTGLLNLGNTCFM 287
            +   +   +++ S +S    L S  +S    TL  S +       G+ GL NLGNT F+
Sbjct: 315 AYCQEECKQKDYKSHLSNCEKLGSDDESVKYLTLAQSSIK------GIVGLQNLGNTSFL 368

Query: 288 NSAIQCLVHTPEFARYFRED-YRREINWQNPLGM-------------------------- 320
           NS  QC+ ++     YF ++ Y  EIN +NP+G                           
Sbjct: 369 NSGTQCISNSFPLVEYFLKNLYFDEINLENPIGTRGQLVKKLGSLIKRMWCGDSKMIVPT 428

Query: 321 ---------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVAD 359
                                 EL+  +LDG+HEDLNRVK K  I++KD DGRPD  +A 
Sbjct: 429 DYKKAVEQFYPVFSGYHMHDSAELITAILDGIHEDLNRVKKKLQIQNKDYDGRPDFVIAK 488

Query: 360 EYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMY--LSLPLQATTTRTMTV 417
           E W NH+ARN SIIVD+  G  K TL CP C +VS+TF P++   L +P Q  TT +   
Sbjct: 489 ESWLNHLARNQSIIVDLINGLQKFTLKCPTCQQVSITFQPYLIVELDIPTQKKTTISFKF 548

Query: 418 T--VFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLD 475
              +F S    +P    + +P     ++ ++ +G+I  LK   +L    I      +FLD
Sbjct: 549 YEDLFKSTQMTIPFDKNINIP----LKEYLKYVGSI--LKVDSQLFGYIINTDKSYQFLD 602

Query: 476 DPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSS 535
               S+  I+     +     KL +  +      +++ Q P   Q  +Q+  +   +  S
Sbjct: 603 QNQ-SIVDIRKRSKKSQLCFRKLTEHEI------KMKNQIP--IQFENQY--FQNSIRKS 651

Query: 536 ISRDDVISSGK------IQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNS 589
             ++ V+   +      +   +    + F    +++    +  +   T +  + +   N 
Sbjct: 652 FDQNGVLICDRQMKLKQVHLLIFNHFNQFFSHHNILGYGVYVLNQYYTLIYRTNQNPQNP 711

Query: 590 SSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQK 649
                        A    N  ++  DE+     +    ++  +I     S  + + W Q 
Sbjct: 712 --------CRFCYAQNCDNCEVKFDDET-----IEQVMNRAFKI-DQQVSFKIIILWKQC 757

Query: 650 LLEK---------YNTHF-LENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPED 699
            LE+         YN  + LE  ++   N  + +K+    ++LY CL+     + L  E+
Sbjct: 758 PLEQVGLSDMFEYYNKLYKLEVQVQNIGNSLINQKSSQRNVTLYDCLQYSQMPQQLNKEN 817

Query: 700 MWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF-SYSRSMKHKLETFVNFPIHDFNLTKY 758
            WYC  CK+  +A + + +++ P++L+  L RF + ++  K K+E  VNFPI++ ++T Y
Sbjct: 818 TWYCKICKQHVKAFQSVQIYKAPQLLIFKLNRFKANNKIFKQKIEDLVNFPINNLDMTDY 877

Query: 759 VANKNS----------------SRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNF 802
           V N N+                 ++ +Y+LYA++NH+GG G GHYT + K    N WYNF
Sbjct: 878 VINSNTPNEFLKENESNNGEINKKKVIYDLYAISNHFGGQGEGHYTTYAKNKFTNNWYNF 937

Query: 803 DDSHISPINEDDVKSAAAYVLFYR 826
           +DS ++ I E  V S +AYVL Y+
Sbjct: 938 NDSMVNQIMESFVVSESAYVLCYQ 961


>gi|390336152|ref|XP_798688.3| PREDICTED: ubiquitin carboxyl-terminal hydrolase 31-like
           [Strongylocentrotus purpuratus]
          Length = 1197

 Score =  233 bits (593), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 187/680 (27%), Positives = 290/680 (42%), Gaps = 159/680 (23%)

Query: 264 SGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPL---- 318
           S +   G   GL+GL N GNTCFMN+ +QCL +T   A YF  E YR +++    L    
Sbjct: 343 SPILLHGRVPGLSGLRNHGNTCFMNAIVQCLSNTDILAEYFVLEQYREDLSHSKKLSKKF 402

Query: 319 ---GMV--------------------------------------------ELLAFLLDGL 331
              G V                                            E L +LLD +
Sbjct: 403 GTKGEVTEQLAVLLKAIWSCKYSPHHTTEFKRIVARHGSQYRGNDQHDAQEFLIWLLDKV 462

Query: 332 HEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCN 391
           HEDLN  K K Y + K+   + DE +A E  ANH+ RN+S + D+ Q QY+S+L CP C 
Sbjct: 463 HEDLNSAKKK-YKQLKNGQNKSDELMAAESLANHMRRNNSFVQDLFQAQYRSSLTCPHCG 521

Query: 392 KVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNI 451
           K S TFDPF+ +SLP+   TTR + V V  +D       + + +   G   DL   + + 
Sbjct: 522 KQSNTFDPFLCVSLPIPQRTTRVIIVVVIYADRDPRVVRFGIVLETSGTVADLRSTIAST 581

Query: 452 CSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVP----KLVKKAVFLQL 507
           CS+  +  + + E+      R   D    LS + D D + A   P     +++ +     
Sbjct: 582 CSIAVT-RIVLTEVYFDGFYRSFGD-TQPLSDVHDGDSIYAVETPHNSHSMLQNSQVKPY 639

Query: 508 IHRLQEQEP---------GAAQTTSQWKAYGTPLVSSISRDDV-------------ISSG 545
           +H +    P             T    K +G P+   + R+                SSG
Sbjct: 640 LH-VHCNRPVEVITMVIINQQGTGRNGKRFGQPMAIEVDRNVSHEQLTLIILKAMGCSSG 698

Query: 546 KIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVT 605
                +Q  L P L+              +   +D  G  H      I  E+A +    T
Sbjct: 699 NADKIMQ--LGPVLQ--------------LGIVIDAKGSRHY-----IPFEEARAMHNAT 737

Query: 606 LPNLPLQLVDESNVCFDLS--VEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLL 663
           +  + LQ   E      +   VE ++ IR      ++ +Y++  + +  + ++H      
Sbjct: 738 ITRM-LQGTSEEGGPPHVKAIVEWERDIRTMFCQRAMSIYIEEHETVQRERSSH------ 790

Query: 664 EVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPE 723
                 PV         SL+ C++ + +EE L  ++ W C  CK  +Q +K+L LW LPE
Sbjct: 791 ----QQPVR-------ASLFDCIDLYTQEEKLGEDNAWNCSHCKRFQQGTKRLTLWTLPE 839

Query: 724 VLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSS------------------ 765
           VL++HLKRF    S + KL T V+FPIH+ N+ +Y+ ++  S                  
Sbjct: 840 VLILHLKRFKQVGSARTKLSTQVDFPIHNLNMGQYIEHRRMSQGLPMNGNSQAALLNSLT 899

Query: 766 ----------RRQ--------LYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHI 807
                     RR+        +Y+LYA+ NH G +  GHYTA  K   + +WY+FDD+ +
Sbjct: 900 AWSPWKQQGGRRRSTTLVGDNVYDLYAVCNHSGSLTGGHYTAFCKNSLDAQWYHFDDAKV 959

Query: 808 SPINEDDVKSAAAYVLFYRR 827
            P+ E+ + +  AY+LFY R
Sbjct: 960 VPVPEERLVNKGAYLLFYHR 979


>gi|312082391|ref|XP_003143425.1| ubiquitin carboxyl-terminal hydrolase [Loa loa]
          Length = 1131

 Score =  228 bits (582), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 230/926 (24%), Positives = 378/926 (40%), Gaps = 195/926 (21%)

Query: 1    WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLV-----NDATAEDP 55
            WW+ W+                       A  S SK P  I+N+ ++     ND + + P
Sbjct: 300  WWRQWV----------------------HALMSNSKVPP-INNASIITVKQKNDWSYKVP 336

Query: 56   G---AGPEIVDTLLEGRDYILLPQEVWNQLHSWYGG----GPTLARKVISSGL------S 102
                 G  +   L+  +D+  L   +W  L  W+G     G +L R+++ + +      +
Sbjct: 337  SLSNEGAPLAQNLVLNKDFEALAPCLWKALLRWHGSAAREGISLQRRILPARIVDPAAAN 396

Query: 103  QTELAVEVYPLRLQLLVMPRGEC----STIRISKKETIGEL------HRRACSIFYLNLE 152
             T   +E+YPL L +L           S    +K+ ++  L        R C+I  L LE
Sbjct: 397  STGSIIELYPLTLLILRHSTASGGWLHSAFEWNKESSLRRLPWCVVSESRICTIEEL-LE 455

Query: 153  QICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKK 212
             +       H+ H  ++D++     A +++D      +LDN        S+  N    ++
Sbjct: 456  LL------AHQLH--ISDVESARLWA-VEIDGSPCKRLLDN-------DSVTLNDLKIQQ 499

Query: 213  ASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGAS 272
            ++ +L+E   + +S    W                 P   S  +S N  G +   +  + 
Sbjct: 500  SAQLLLELRNADMS----W-----------------PEEVSCLESSNAEGYTADNSDSSY 538

Query: 273  V-GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV--------- 321
            + G+TGL N+GNTC+MNSA+QCL +T     YF E  ++ ++      G+V         
Sbjct: 539  ILGITGLYNMGNTCYMNSALQCLSNTRPLTNYFIEGRHKDDMKGLKSTGVVATEYANVVK 598

Query: 322  -----------------------------------ELLAFLLDGLHEDLNRVKHKPYIKS 346
                                               E L+ LLD LHEDLN++++KP+I+ 
Sbjct: 599  ELWSGKKRNIAPIKLRDAIRCAGPVFADRSQHDCQEFLSILLDLLHEDLNQIENKPFIEL 658

Query: 347  KDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLP 406
             D+DGRPD  VA E W  H+ R  SIIVD+  GQ +STL C  CN +S  FD F  L LP
Sbjct: 659  SDSDGRPDSVVAKEAWDAHLKREKSIIVDLFTGQLRSTLTCLNCNAISCRFDAFTCLQLP 718

Query: 407  LQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLK----QSEELKV 462
            +       ++V V   DG  +P  Y   +            L    SL     Q   L  
Sbjct: 719  IPIDQLLLISVVVVKRDGQ-IPIRYAFRLSHDTTIGMFKMKLTEASSLLPNSFQILCLNR 777

Query: 463  AEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKA---VFLQLIHRLQEQEPGAA 519
            A      +   + D    ++   +D  L A+ +P    ++    F+    +  +     A
Sbjct: 778  AGQMMQGVNESIGDDKSPITIYPNDALLYAFELPAEEDQSNPECFVAAPTQYNDSYLLGA 837

Query: 520  QTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTV 579
                  + +G PL+   +     +  K+   V  ++S FLK  +                
Sbjct: 838  TRGCTARVFGVPLILRFTPGKT-TGNKLYEEVWLLVSRFLKNGT---------------- 880

Query: 580  DPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
              +G+      +N A + A   +       P  L      C  LS E       P+    
Sbjct: 881  --AGKQQRTREANRAIDAAEDIRN----GYPFDLC-----CVKLSFEWCSKCAWPAFCRG 929

Query: 640  IV--------------VYVDWSQKLLEKYNTHFLENLLEVFKNGPVTK--KARTEPLSLY 683
             V              V +DW    L     H +E L     +G V +  +    P SL 
Sbjct: 930  CVILSNDEIIEDNLMAVAIDWKPTALYLRYQHSVELLCR--DDGSVLQAWEVHYRPCSLL 987

Query: 684  TCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLE 743
            +CL  F++ E L  E M  C  C ++   +K L +WRLP++L++H KRF   +S +  ++
Sbjct: 988  SCLNDFMQAERLDDEIM--CKPCGKKCPTTKALAIWRLPKILIVHFKRFVCVKSERRYMK 1045

Query: 744  T--FVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYN 801
            +   V+FP+ + +L +++ + +      Y  +A+ NHYG M SGHY A+ K  + N+W++
Sbjct: 1046 SCKVVDFPLENLDLREWLRDPDIKTSTKYSCFAIANHYGAMASGHYVAYAK--NSNQWFS 1103

Query: 802  FDDSHISPINEDDVKSAAAYVLFYRR 827
            F+DS    + E  V   +AY+LFY R
Sbjct: 1104 FNDSRCQAVKESQVDKKSAYLLFYER 1129


>gi|393907263|gb|EFO20645.2| ubiquitin carboxyl-terminal hydrolase [Loa loa]
          Length = 1143

 Score =  228 bits (580), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 232/935 (24%), Positives = 381/935 (40%), Gaps = 205/935 (21%)

Query: 1    WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLV-----NDATAEDP 55
            WW+ W+                       A  S SK P  I+N+ ++     ND + + P
Sbjct: 304  WWRQWV----------------------HALMSNSKVPP-INNASIITVKQKNDWSYKVP 340

Query: 56   G---AGPEIVDTLLEGRDYILLPQEVWNQLHSWYGG----GPTLARKVISSGL------S 102
                 G  +   L+  +D+  L   +W  L  W+G     G +L R+++ + +      +
Sbjct: 341  SLSNEGAPLAQNLVLNKDFEALAPCLWKALLRWHGSAAREGISLQRRILPARIVDPAAAN 400

Query: 103  QTELAVEVYPLRLQLLVMPRGEC----STIRISKKETIGEL------HRRACSIFYLNLE 152
             T   +E+YPL L +L           S    +K+ ++  L        R C+I  L LE
Sbjct: 401  STGSIIELYPLTLLILRHSTASGGWLHSAFEWNKESSLRRLPWCVVSESRICTIEEL-LE 459

Query: 153  QICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKK 212
             +       H+ H  ++D++     A +++D      +LDN        S+  N    ++
Sbjct: 460  LL------AHQLH--ISDVESARLWA-VEIDGSPCKRLLDN-------DSVTLNDLKIQQ 503

Query: 213  ASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGAS 272
            ++ +L+E   + +S    W                 P   S  +S N  G +   +  + 
Sbjct: 504  SAQLLLELRNADMS----W-----------------PEEVSCLESSNAEGYTADNSDSSY 542

Query: 273  V-GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV--------- 321
            + G+TGL N+GNTC+MNSA+QCL +T     YF E  ++ ++      G+V         
Sbjct: 543  ILGITGLYNMGNTCYMNSALQCLSNTRPLTNYFIEGRHKDDMKGLKSTGVVATEYANVVK 602

Query: 322  -----------------------------------ELLAFLLDGLHEDLNRVKHKPYIKS 346
                                               E L+ LLD LHEDLN++++KP+I+ 
Sbjct: 603  ELWSGKKRNIAPIKLRDAIRCAGPVFADRSQHDCQEFLSILLDLLHEDLNQIENKPFIEL 662

Query: 347  KDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLP 406
             D+DGRPD  VA E W  H+ R  SIIVD+  GQ +STL C  CN +S  FD F  L LP
Sbjct: 663  SDSDGRPDSVVAKEAWDAHLKREKSIIVDLFTGQLRSTLTCLNCNAISCRFDAFTCLQLP 722

Query: 407  LQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLK----QSEELKV 462
            +       ++V V   DG  +P  Y   +            L    SL     Q   L  
Sbjct: 723  IPIDQLLLISVVVVKRDGQ-IPIRYAFRLSHDTTIGMFKMKLTEASSLLPNSFQILCLNR 781

Query: 463  AEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPK---------LVKKAVFLQLIHRLQE 513
            A      +   + D    ++   +D  L A+ +P           V     +    ++Q 
Sbjct: 782  AGQMMQGVNESIGDDKSPITIYPNDALLYAFELPAEEDQSNPECFVAAPTVIAAHRKMQY 841

Query: 514  QEP---GAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSF 570
             +    GA +  +  + +G PL+   +     +  K+   V  ++S FLK  +       
Sbjct: 842  NDSYLLGATRGCTA-RVFGVPLILRFTPGKT-TGNKLYEEVWLLVSRFLKNGT------- 892

Query: 571  DPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKT 630
                       +G+      +N A + A   +       P  L      C  LS E    
Sbjct: 893  -----------AGKQQRTREANRAIDAAEDIRN----GYPFDLC-----CVKLSFEWCSK 932

Query: 631  IRIPSSSTSIV--------------VYVDWSQKLLEKYNTHFLENLLEVFKNGPVTK--K 674
               P+     V              V +DW    L     H +E L     +G V +  +
Sbjct: 933  CAWPAFCRGCVILSNDEIIEDNLMAVAIDWKPTALYLRYQHSVELLCR--DDGSVLQAWE 990

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
                P SL +CL  F++ E L  E M  C  C ++   +K L +WRLP++L++H KRF  
Sbjct: 991  VHYRPCSLLSCLNDFMQAERLDDEIM--CKPCGKKCPTTKALAIWRLPKILIVHFKRFVC 1048

Query: 735  SRSMKHKLET--FVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIK 792
             +S +  +++   V+FP+ + +L +++ + +      Y  +A+ NHYG M SGHY A+ K
Sbjct: 1049 VKSERRYMKSCKVVDFPLENLDLREWLRDPDIKTSTKYSCFAIANHYGAMASGHYVAYAK 1108

Query: 793  LLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
              + N+W++F+DS    + E  V   +AY+LFY R
Sbjct: 1109 --NSNQWFSFNDSRCQAVKESQVDKKSAYLLFYER 1141


>gi|443699630|gb|ELT99007.1| hypothetical protein CAPTEDRAFT_129894 [Capitella teleta]
          Length = 1508

 Score =  226 bits (577), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 230/858 (26%), Positives = 353/858 (41%), Gaps = 194/858 (22%)

Query: 32   SSASKRPSGIDNSDLVND-----ATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWY 86
            S+A++RP  IDN  L+       AT  + G   +    L  GRD+ L+P+ VW  L +WY
Sbjct: 539  SNAAQRPGAIDNGPLIAPSNAKVATLTNEGGRLQRDRMLARGRDFELVPEAVWKALSAWY 598

Query: 87   ---------------GGGPTLARKVISSGLSQTELAVEVYPLRLQLLVM----------P 121
                           G  P L    I   L + + AV   P       M          P
Sbjct: 599  GGSVPLPRTVIISQQGMAPELELYPIVVKLFRHQTAVNRPPQAATFTGMMGGIGGMPSTP 658

Query: 122  RGECS-TIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANI 180
            R   + T   S+K T+ ++          + E + +W +   +   ++ + + TLD   I
Sbjct: 659  RRYLAYTAAFSRKHTLRQILDFLALRLRFSREDMRLWKFKDEQSMTMLEEEESTLDQLGI 718

Query: 181  QMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRN 240
              +    +++L  V   +     + +  A+ KA+                        RN
Sbjct: 719  TEN----MQLLLEVRNKDLTWPEEMSFLAKNKAA----------------------IDRN 752

Query: 241  HSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEF 300
              +                       T +GAS    GL NLGNTCFMNSA+QC+ +T   
Sbjct: 753  QQAP----------------------TEKGAS----GLSNLGNTCFMNSAVQCVSNTRIL 786

Query: 301  ARYFRED-YRREINWQNPLGMV-------------------------------------- 321
             +YF    +  E+N  N LGM                                       
Sbjct: 787  TQYFTGGMHLYELNRSNTLGMKGHIAQRYGELIKDLWSGTAKSIAPLKLRWTIGKYAPRF 846

Query: 322  ---------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSI 372
                     E LAFLLDGLHEDLNRV +KPY++ KD+DGR DEEVA E W NH+ RN S+
Sbjct: 847  NGFQQHDAQEFLAFLLDGLHEDLNRVHNKPYVELKDSDGREDEEVAKEAWDNHLLRNRSV 906

Query: 373  IVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYT 432
            IVD+  GQ KST++C  C   SV FDPF +LSLPL   +   + V V   +GS  P  Y 
Sbjct: 907  IVDLFHGQLKSTVMCQNCGTKSVRFDPFTFLSLPLPMESCIHIEVIVIRLNGSK-PVRYG 965

Query: 433  VTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDD--PLISLSTIKDDDHL 490
            + +    +   L Q L  +  +  + +L + EIQ   ++ F  D   + SL+      +L
Sbjct: 966  LRLNLDEKYSGLKQSLSELSGIP-ALQLLIVEIQGALVKCFPKDHQKIRSLA----GGNL 1020

Query: 491  AAYRVPKLVKKAVFLQLIHRLQEQEP----GAAQTTSQWKAY-------GTPLVSSISRD 539
             AY +P              L+E+ P    G     S + +        G+P  S  S D
Sbjct: 1021 HAYELPPTSPIPTMT-----LEEEAPLEPRGPPSRNSSFSSLTPSIIPNGSPNQSGASPD 1075

Query: 540  DVISSG--KIQSTVQRMLSPFLKKESLM--------------HADSFD--------PSSM 575
            D+++     I   V R+ S FL  +                 H  + D         S +
Sbjct: 1076 DILNGFVVAINRKVIRVDSYFLSSQKTRPSVFGVPVILPCDDHTLNLDLYKHVWSQVSRL 1135

Query: 576  VTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVC-------FDLSVEGD 628
            VT + P+  + SN +     +D   S     P     +  + ++C       F    + D
Sbjct: 1136 VTPLPPNETSTSNHA-----QDCDDSLCYEYPFTLKVVSKDGSMCAWCPWYRFCRGCKLD 1190

Query: 629  KTIRIPSSSTSIVVYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLE 687
             +  + +  +S +  +DW    L  +Y      N ++   +   +++ +T+P+ L TCL+
Sbjct: 1191 CSEDMYNFGSSYIA-IDWEPTALHLRYQQSQERNYMD-HSSVEESRRLQTDPIDLDTCLK 1248

Query: 688  AFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVN 747
            AF   E L  +++ YC +CKE ++A K L +WRLP +L+IHLKRF +      K +  V 
Sbjct: 1249 AFTTAEELGEDELVYCSKCKEHQRAIKTLKIWRLPPILIIHLKRFQFHNGRWVKSQKIVK 1308

Query: 748  FPIHDFNLTKYVANKNSS 765
            FP+  F+   YV  +  S
Sbjct: 1309 FPVRKFDPANYVVTRGHS 1326



 Score = 46.2 bits (108), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 768  QLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
            + + L  L +H G MG GHY  + K  +E +WY ++DS    I E  V +  AY++F+
Sbjct: 1413 RFFSLSTLQSHSGIMGGGHYVTYAKHHNE-KWYLYNDSSCKEIPETQVDTNNAYIMFF 1469


>gi|355727910|gb|AES09351.1| ubiquitin specific peptidase 15 [Mustela putorius furo]
          Length = 504

 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 167/502 (33%), Positives = 244/502 (48%), Gaps = 60/502 (11%)

Query: 378 QGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPK 437
            G +KSTLVCP C K+SVTFDPF YL+LPL     RT+ V +   D    P  Y V VPK
Sbjct: 2   HGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPLTKPMQYKVVVPK 61

Query: 438 HGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTIKDDDHLAAYRVP 496
            G   DL   L  +  +  ++++ V +I NH   R F  D  +S    +DD ++    + 
Sbjct: 62  IGNILDLCTALSALSGVP-ADKMIVTDIYNHRFHRIFAMDENLSSIMERDDIYVFEININ 120

Query: 497 KLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRML 555
           +    + V + +  R + +       T     +G P + ++ R++  +  K+ + +   +
Sbjct: 121 RTEDTEHVIIPVCLREKFRHSSYTHHTGS-SLFGQPFLMAVPRNN--TEDKLYNLLLLRM 177

Query: 556 SPFLK--------------------------------KESLMHADSFDPSSMVTTVDPSG 583
             ++K                                  S M  D  D  S      PS 
Sbjct: 178 CRYVKISTETEETEGSLHCCKDQNINGNGPNGIHEEGSPSEMETDEPDDESSQDQELPSE 237

Query: 584 EAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCF----------DLSVEGDKTIRI 633
             +S S  ++  ++ S +   T      Q+       F          D++   D T  I
Sbjct: 238 NENSQSEDSVGGDNDSENGLCTEEICKGQITGHKKRLFTFQFNNLGNTDINYIKDDTRHI 297

Query: 634 PSSSTSI------VVYVDWSQKLLEKYNTHFLENLLEVF-KNGPVTKKARTEPL-SLYTC 685
                 +       + +DW   L ++Y   F EN  E F K+  V  K   +P   L  C
Sbjct: 298 RFDERQLRLDERSFLALDWDPDLKKRY---FDENAAEDFEKHESVEYKPPKKPFVKLKDC 354

Query: 686 LEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETF 745
           +E F  +E L  ED WYCP CKE +QA+KKLDLW LP VLV+HLKRFSYSR M+ KL+T 
Sbjct: 355 IELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTL 414

Query: 746 VNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDS 805
           V+FPI+D ++++++ N N+   + Y L A++NHYGGMG GHYTA  K  D+ +WY FDDS
Sbjct: 415 VDFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDS 473

Query: 806 HISPINEDDVKSAAAYVLFYRR 827
            +S  +ED + S AAYVLFY+R
Sbjct: 474 SVSTASEDQIVSKAAYVLFYQR 495


>gi|410056407|ref|XP_003954471.1| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal
           hydrolase 11, partial [Pan troglodytes]
          Length = 787

 Score =  223 bits (568), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 192/611 (31%), Positives = 260/611 (42%), Gaps = 149/611 (24%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV        GD  S            S  P  I+N+ L  D           
Sbjct: 109 WYKQWEAYVQ------GGDQDS------------STFPGCINNATLFQDEINW------R 144

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L+EG  Y+LLP   W+ L SWYG   G P + RKVI     Q    VEVYP+ L L
Sbjct: 145 LKEGLVEGEGYVLLPAAAWHXLVSWYGLEHGQPPIERKVIELPNIQK---VEVYPVEL-L 200

Query: 118 LVMPR--GECSTIRISKKETIGELHRRACSIFYLN-LEQICIWDYYGHRKHALMNDMDRT 174
           LV     G+  T++ S  ++IG + R A   F +   E   +W          + D   T
Sbjct: 201 LVRHNDLGKSHTVQFSHTDSIGLVLRTARERFLVEPQEDTRLWAKNSEGSLDRLYDTHIT 260

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS 234
           + DA ++  Q I++E                     KK                G W   
Sbjct: 261 VLDAALETGQLIIME-------------------TRKKD---------------GTWP-- 284

Query: 235 KGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCL 294
                  S+++    N  S  D D               G+ GL NLGNTCFMNSA+QCL
Sbjct: 285 -------SAQLHVMNNNMSEEDEDFK----------GQPGICGLTNLGNTCFMNSALQCL 327

Query: 295 VHTPEFARYFRED-YRREINWQNPLGMV-------------------------------- 321
            + P+   YF  + Y  E+N++NPLGM                                 
Sbjct: 328 SNVPQLTEYFLNNCYLEELNFRNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVG 387

Query: 322 ---------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHI 366
                          ELL+FLLDGLHEDLNRVK K Y++  DA GRPD+EVA E W NH 
Sbjct: 388 HFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVELCDAAGRPDQEVAQEAWQNHK 447

Query: 367 ARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSA 426
            RNDS+IVD   G +KSTLVCP C  VSVTFDPF YLS+PL  +  R + V     D   
Sbjct: 448 RRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSVPLPISHKRVLEVFFIPMDPRR 507

Query: 427 LPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTI 484
            P  + + VPK G+  DL   L     +   E + VA++ +H   +   L++P   LS+I
Sbjct: 508 KPEQHRLVVPKKGKISDLCVALSKHTGIS-PERMMVADVFSHRFYKLYQLEEP---LSSI 563

Query: 485 KDDDHLAAYRVPKLVKKAVFLQ-LIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVIS 543
            D D +  +    +  +  FL+ L+H L           S    +G PL+ S+ R     
Sbjct: 564 LDRDDI--FVXVGMAGRWWFLRNLVHFLL-----YGPAYSGLMLFGHPLLVSVPRYRFTW 616

Query: 544 SGKIQSTVQRM 554
            G     + R+
Sbjct: 617 EGLYNVLIFRL 627


>gi|123452201|ref|XP_001314204.1| Clan CA, family C19, ubiquitin hydrolase-like cysteine peptidase
           [Trichomonas vaginalis G3]
 gi|121896411|gb|EAY01563.1| Clan CA, family C19, ubiquitin hydrolase-like cysteine peptidase
           [Trichomonas vaginalis G3]
          Length = 813

 Score =  223 bits (568), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 221/848 (26%), Positives = 343/848 (40%), Gaps = 156/848 (18%)

Query: 41  IDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSG 100
           IDNS++       DP     +  T  E  D+ ++ +  W+ L+ WYG    +  +V+   
Sbjct: 58  IDNSEIA------DPENKSRVAKTKGENTDFYIVDKTEWDVLYGWYGCNNIIKLEVVMDE 111

Query: 101 LSQTELAVEVYPLRLQLLVMPRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDY 159
           +    +++  Y    +L V+   E   I + K     ++  +A  +F +  + Q+ + DY
Sbjct: 112 VENKPISIVYYQ---KLTVVYGEEKKDIEVHKYMYAKDILAKARELFNIPADKQLQLIDY 168

Query: 160 YGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVE 219
                 ALM D D  L   N+   Q I V   D  +    K   Q     +    S    
Sbjct: 169 LNGNYVALM-DEDSYLKRYNLIDGQLIAVNYKDENDEWKIKKPTQVEYLTKLAMGSTPTT 227

Query: 220 PSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLL 279
            + +++    G+   K                                      G  G  
Sbjct: 228 AASTTMRSRYGYDEGKP-------------------------------------GRHGFN 250

Query: 280 NLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV----------------- 321
           NLGNTC+ NS  QCL+HT    +YF +  + + IN +N LG                   
Sbjct: 251 NLGNTCYFNSGTQCLMHTMPLIQYFVDGRWEQWINRENKLGSHGCLATAFNSICQQMWSD 310

Query: 322 -------------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDAD 350
                                          EL+ F+LDG+HEDLNR K KP ++    D
Sbjct: 311 NTSGAIRPSELKAAIGGFNSRFSGYEQHDSHELILFMLDGIHEDLNRCKVKPQVEPVIGD 370

Query: 351 GRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQAT 410
           G  DE +ADE W     RNDSIIVD   G  +S L+CP C K +V FDPF+ + LPL   
Sbjct: 371 GANDEAIADESWKRCKLRNDSIIVDHFYGLLRSQLLCPNCQKTTVVFDPFLTVELPLARE 430

Query: 411 TTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDL--IQVLGNICSLKQSEEL----KVAE 464
             R + V+    D  A  + + + +    R  ++  + ++  + S K  +E+        
Sbjct: 431 NERKIHVSFIPKDIKAKWTEFNINI----RTSEIANVNLISKLVSEKLGKEVLCIPAALN 486

Query: 465 IQNHSIQRFLDDPLISL--STIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTT 522
            +N SI+    D   S   + + + D    + VP L+  +V  Q        +P      
Sbjct: 487 TENFSIKFGFPDTYESRLQAVVFEIDSQDKFYVPVLIVGSVASQYNPNYFNAQPITP--- 543

Query: 523 SQWKAYGTPLVSSISRDDV-ISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDP 581
                   P +  I  DD+ +   K +  V   L P L  +S +                
Sbjct: 544 --------PFL--IEVDDLSLEEDKYKDIVLERLKPVLDTKSEIEL-------------- 579

Query: 582 SGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDE--SNVCFDLSVEGDKTIRIPSSSTS 639
             E   N  + I KE     +A   P   +    +   NV    S +  K ++  +S+  
Sbjct: 580 -TEDAKNFLARIKKEPEEGQEA---PEFAVNFQKDYWKNV---QSPKPSKHVKC-ASANG 631

Query: 640 IVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPED 699
           +VV  D     + K + + L   +     G  +K   T+ + L  C   F   + L  ++
Sbjct: 632 VVVTAD-----ISKLDMNVLVQNVPSNAYGYSSKHTSTDTIPLDRCFNLFSTVDTLDEQN 686

Query: 700 MWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYV 759
            W+CP C +   A KK+++WR PEVLVIHLKRFS       K  T V+FP  + ++  Y+
Sbjct: 687 QWHCPHCGQFVCADKKMEIWRCPEVLVIHLKRFSGEGYYVKKDSTLVDFP-EELDMAPYI 745

Query: 760 ANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAA 819
             K + +   Y+LYA++ H G MG GHY AH   +   +WY FDDS     + +D KS  
Sbjct: 746 RGK-TDQSTHYKLYAVSEHMGSMGGGHYIAH--AIVNGKWYKFDDSSCYESSYEDAKSPL 802

Query: 820 AYVLFYRR 827
           AYVLFY+R
Sbjct: 803 AYVLFYQR 810


>gi|340503530|gb|EGR30106.1| ubiquitin carboxyl-terminal hydrolase family protein, putative
           [Ichthyophthirius multifiliis]
          Length = 549

 Score =  222 bits (565), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 152/549 (27%), Positives = 264/549 (48%), Gaps = 76/549 (13%)

Query: 298 PEFARYFREDYRREINWQNPLGMVELLAFLLDGLHEDLNRVKHKPYIKSKDADG--RPDE 355
           P+F  Y ++D +            ELL+++LDGLHEDLNR+K KP I++ + DG    D+
Sbjct: 55  PQFMGYNQQDSQ------------ELLSYILDGLHEDLNRIKEKPLIENIEYDGGSNNDQ 102

Query: 356 EVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTM 415
            ++ ++  N+  RNDSII D+  GQ+KSTL CP C K+S+TFDP+M LSLP+     R +
Sbjct: 103 LISQKFNENYKKRNDSIIADLILGQFKSTLECPTCGKISITFDPYMTLSLPIPQENYRQI 162

Query: 416 TVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLD 475
              +   D    P+  ++ +  +     L Q+L     +  +E L+   +++  I +  +
Sbjct: 163 QFFIIYKDSRVTPTQLSLKLDSNTTILQLKQILYQYTKIN-AENLEFCNLKDFYITQIFE 221

Query: 476 D----PLISLSTIKDDDHLAAYRVPK-LVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGT 530
           +     +I     ++  +L  +++PK LV    F+                  Q + + T
Sbjct: 222 NNETIKVIEQYGNQNIFYLQQFQIPKILVMNDQFI------------------QKRYFNT 263

Query: 531 PLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSS 590
             +  I          IQ+     +   L+K       +       T +    E   NS 
Sbjct: 264 ITIYII----------IQNNQSEPIPILLRKRQKTEQINLQDDDTNTIIQ---EIIQNSK 310

Query: 591 SNIAKEDASSSKAVTLPNLPLQLVDESNVC--FDLSVEGDKTIRIPSSSTSIVVYVDWSQ 648
            N    D  + K      +P +  +  ++    D   EG + + I       ++    S+
Sbjct: 311 YN---ADLFNFKNQDGREIPFENCENKSISQYIDKGKEGKECLNIR------MLLQKNSE 361

Query: 649 KLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKE 708
           K L K+N +  E   ++ +N  +  K     +++  CL+ F ++E L   + WYC +CKE
Sbjct: 362 KQLYKFNRYKDEKDTKILENSNLLDKK----ITIQKCLQEFTKKEILESGNEWYCNKCKE 417

Query: 709 RRQASKKLDLWRLPEVLVIHLKRFS----------YSRSMKHKLETFVNFPIHDFNLTKY 758
            ++ASK + ++ +P++L+IHLKRF           +  S   K++ FVNF I + +L+ +
Sbjct: 418 HKKASKIMQIYSVPKILIIHLKRFKSGKMRNFGKYFFESEGKKIDDFVNFEIQNLDLSDF 477

Query: 759 VANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSA 818
           V +K + +  +Y+L+A++ HYGG   GHYTA     +  +W+ F+DS +  I    V + 
Sbjct: 478 VISKFNQQNYIYDLFAVSQHYGGTSGGHYTAAGFNFENKKWFQFNDSQVDSIQPQQVVNK 537

Query: 819 AAYVLFYRR 827
            AY+LFYRR
Sbjct: 538 NAYLLFYRR 546


>gi|348553563|ref|XP_003462596.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 11-like isoform 2
           [Cavia porcellus]
          Length = 929

 Score =  222 bits (565), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 180/594 (30%), Positives = 261/594 (43%), Gaps = 136/594 (22%)

Query: 26  HFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSW 85
           +       AS  P  I+N++L  D        G      L+EG DY+LLP   W+ L SW
Sbjct: 68  YVQGGDQDASTFPGCINNAELFEDQINWCLKEG------LMEGEDYVLLPSAAWHYLVSW 121

Query: 86  YG---GGPTLARKVISSGLSQTELAVEVYPLRLQLLVMPRGECS---TIRISKKETIGEL 139
           YG   G P + RKVI      +   VEVYP++  LL++  G+     T + S  +++ ++
Sbjct: 122 YGLEPGQPPIERKVIE---LYSIPKVEVYPVK--LLLVQHGDTDLVLTAQFSLTDSVDQV 176

Query: 140 HRRACSIFYLNL-EQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTN 198
            R A   F ++  E   +W          + +   TL DA ++  Q I++E+ +      
Sbjct: 177 LRTAREQFLVDAQEDTRLWVKKSEGYLDRLFNTHVTLLDAALESGQLIIMEIRNK----- 231

Query: 199 CKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSD 258
                                         G W +++    +  SE           + +
Sbjct: 232 -----------------------------DGSWPSTQLRVVSRMSE-----------EDE 251

Query: 259 NTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNP 317
           +  G  G+          GL NLGNTCFMNSA+QCL + P+   YF ++ Y  E+N++NP
Sbjct: 252 DFQGQPGI---------CGLTNLGNTCFMNSALQCLSNVPQLTEYFLDNRYLEELNFRNP 302

Query: 318 LGM-----------------------------------------------VELLAFLLDG 330
           LGM                                                ELL+FLLDG
Sbjct: 303 LGMRGELAEAYADLVKQTWSGCHRSIVPNVFKNKVGRFASQFLGYQQHDSQELLSFLLDG 362

Query: 331 LHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVC 390
           LHEDLNRVK K Y++  DA GRPD+EVA E W NH  RNDS+IVD   G +KSTLVCP C
Sbjct: 363 LHEDLNRVKKKEYVELCDAAGRPDQEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDC 422

Query: 391 NKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGN 450
             VSVTFDPF YLS+PL     R + V     D    P  + V VPK G   DL   L  
Sbjct: 423 GNVSVTFDPFCYLSVPLPVCHKRVLEVFFVPMDPRRKPEQHRVVVPKKGNISDLCMALSK 482

Query: 451 ICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTIKDDDHLAAYRVPKLV------KKA 502
              +  ++++ V ++ +H   +   L+DP   LS I D D +  Y V   +      K  
Sbjct: 483 HTGIA-ADKMIVTDVFSHRFYKLYQLEDP---LSGILDRDDIFVYEVSGRIEPIEGSKDD 538

Query: 503 VFLQLIHRLQEQEPGAAQTTSQWK--AYGTPLVSSISRDDVISSGKIQSTVQRM 554
           + + +   L+E+ P      S +    +G PL+ S+ +D +   G     + R+
Sbjct: 539 IVVPVY--LRERTPAQDYNNSYYGLILFGHPLLVSVPQDRLSWEGLYNILMYRL 590



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 84/194 (43%), Positives = 123/194 (63%), Gaps = 7/194 (3%)

Query: 638 TSIVVYVDWSQKLLEKY-NTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLV 696
           T   + +DW  ++  +Y +    E  ++    G V KKA   P+ L  C+E F   E L 
Sbjct: 706 TQPYIAMDWEPEMKRRYYDEAEAEGYVKHECVGYVLKKA---PVQLQECIELFTTVETLE 762

Query: 697 PEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLT 756
            E+ WYC  CK+ + A+KKLDLW LPE+L+IHLKRFS+S+    KL+T V+FPI D + +
Sbjct: 763 KENPWYCSSCKQHQLATKKLDLWMLPEILIIHLKRFSFSKFSHEKLDTLVHFPIRDLDFS 822

Query: 757 KYVAN-KNSSRRQL--YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINED 813
           ++V   +N S  +L  Y+L A++NHYGG+  GHYT      D  +W+ FDD+ +SP+NE+
Sbjct: 823 EFVIKPQNESAPELYKYDLIAVSNHYGGIRDGHYTTFACNKDSGQWHYFDDNSVSPVNEN 882

Query: 814 DVKSAAAYVLFYRR 827
            ++S AAYVLFY+R
Sbjct: 883 QIESKAAYVLFYQR 896


>gi|291220896|ref|XP_002730462.1| PREDICTED: ubiquitin specific peptidase 15-like [Saccoglossus
            kowalevskii]
          Length = 1624

 Score =  222 bits (565), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 165/552 (29%), Positives = 240/552 (43%), Gaps = 147/552 (26%)

Query: 36   KRPSGIDNSDLVNDATAE-----DPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGP 90
            ++P  IDN+ L+   T +     + G       TL+ GRD+ +LP+ VW  L SWYGG P
Sbjct: 511  QKPGPIDNTTLIMPETRKVMMLTNEGGRLRKNATLVRGRDFEILPEPVWKALLSWYGGSP 570

Query: 91   TLARKVISSGLSQTELAVEVYPLRLQLLV----MPR-------------GECSTI----- 128
             L R VI          +E+YPL ++LL      PR             G  S +     
Sbjct: 571  ALPRNVIIPSNGDPTPELELYPLSVRLLRHQANQPRQNTWNAVIGGFSFGAGSYVGTSSH 630

Query: 129  ----------------RISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMD 172
                              SK  TI +++   C    +  E + +WD        L+ + +
Sbjct: 631  TNNTPAPPKRYLAYVAAFSKMHTIQQVYDFLCQRLRIRNEDMRLWDLKDENNPVLLEEEN 690

Query: 173  RTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWS 232
             TL+  +IQ +Q +L+EV +           +D  + E+ +S  L               
Sbjct: 691  HTLEHLSIQDNQQVLIEVRN-----------KDMSWPEEMSSLAL--------------- 724

Query: 233  ASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQ 292
              K  +    +++ T                          G TGL NLGNTCFMNSA+Q
Sbjct: 725  --KNKTDKKKNQVPTDK------------------------GATGLSNLGNTCFMNSALQ 758

Query: 293  CLVHTPEFARYFRED-YRREINWQNPLGMV------------------------------ 321
            C+ +T    +YF ++ ++ E N  NPLGM                               
Sbjct: 759  CISNTKPLTKYFNDNMHQYEFNKTNPLGMKGHIAKRYGDLVQDLWSGTSKSIAPLKLRWT 818

Query: 322  -----------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWAN 364
                             ELLAFLLDGLHEDLNRV++KPY++ KD+DGRPDEEVADE W N
Sbjct: 819  IGKYAPRFNGFQQHDSQELLAFLLDGLHEDLNRVQNKPYVELKDSDGRPDEEVADEAWEN 878

Query: 365  HIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDG 424
            H+ RN S+IVD+  GQ +S + C  C   SV FDPF YLSLPL    +  + + V   DG
Sbjct: 879  HMLRNRSVIVDLFHGQLRSLVCCKECGNESVRFDPFTYLSLPLPLDNSMHLEIVVIRLDG 938

Query: 425  SALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTI 484
            + +P  Y + +    + +DL Q L  +C L   ++L + E+    I+    D     + +
Sbjct: 939  T-VPMKYGLRLNMEDKYKDLKQYLSELCDL-TPQQLLLVEVFGAMIRSLPSDGQKVRTAL 996

Query: 485  KDDDHLAAYRVP 496
                +L AY +P
Sbjct: 997  --GGYLYAYEIP 1006



 Score =  101 bits (252), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/122 (38%), Positives = 73/122 (59%)

Query: 639  SIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPE 698
            S  + +DW    L        E ++    +  V++K +TEP+ L TCL+AF +EE L  +
Sbjct: 1230 SAYIAIDWDPTALHLRYQSSQERVVADHDSVEVSRKLQTEPIDLDTCLKAFTKEEELGED 1289

Query: 699  DMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKY 758
            ++W+C +CKE RQA+KKL LWRLP +L+I +KRF Y      K +  V FP   F+ +++
Sbjct: 1290 ELWFCSKCKEHRQATKKLALWRLPPILIIQMKRFQYVNGRWVKSQKIVKFPKRKFDPSRF 1349

Query: 759  VA 760
            +A
Sbjct: 1350 IA 1351



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 1/61 (1%)

Query: 767  RQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYR 826
            + +Y LY+L+ H G +G GHY A+    ++N WY ++DS    I E+ + +  AY+LFY 
Sbjct: 1528 KPIYNLYSLSCHTGILGGGHYVAYAINPNDN-WYIYNDSTCKEIKEELIDTDNAYMLFYE 1586

Query: 827  R 827
            R
Sbjct: 1587 R 1587


>gi|219124126|ref|XP_002182362.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406323|gb|EEC46263.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 641

 Score =  221 bits (564), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 159/517 (30%), Positives = 253/517 (48%), Gaps = 52/517 (10%)

Query: 322 ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQY 381
           ELLAFLL GL EDLNR+  KPYI++ D+DGRPD E+AD +W NH+ R  SIIV +  GQY
Sbjct: 127 ELLAFLLGGLSEDLNRIMDKPYIEAPDSDGRPDHELADIWWTNHLKREMSIIVALFTGQY 186

Query: 382 KSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRC 441
           KS L C  C   S  F+PF +L LPL      T+++ V+          Y V V   G+ 
Sbjct: 187 KSLLTCRSCKYESARFEPFSFLQLPLPEDDQLTVSLVVYPLKDGTDTLKYCVRVNSDGKL 246

Query: 442 RDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKK 501
           RD++  L  +  ++Q+ +  V+ I++  +Q         +ST +  D    +  P    +
Sbjct: 247 RDVLLALAMLLYVEQNGK-AVSPIEDSPLQGNAMTESDGVSTDESSDGEVLFVKP----R 301

Query: 502 AVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSIS-------RD--DVISSGKIQSTVQ 552
           A FL +  R  E     +      + +GTP++  ++       RD  D+I++ ++++ V 
Sbjct: 302 ASFLAIAQRRSELVSQNSLHPLAHRVFGTPILMRVNDLQTCTGRDLYDLIAA-RVRNVVP 360

Query: 553 RMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQ 612
           +    FL + S     + +       +  +G+  S   +    E+ S   A  +P    +
Sbjct: 361 KQAIRFLSEIS-SSKKTVNLKEQSVELTKTGKRQSVGRTTTDMEEVS---AGPVPRYGFR 416

Query: 613 LVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVT 672
           L   S        +G + +        I  + D     L   +  F             T
Sbjct: 417 LRITSR-------DGRRCL--------ICRWFDCCVGCLIPDDDEF-------------T 448

Query: 673 KKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF 732
                  ++L  CL+AF  EE  +PE   YC +CK+ R  +K++ LWRLP V++I LKRF
Sbjct: 449 TGNHAGSITLEQCLDAFAEEEK-IPEA--YCSRCKDFRVQTKRMSLWRLPPVVIIQLKRF 505

Query: 733 SYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRR--QLYELYALTNHYGGMGSGHYTAH 790
            +++ M+ KL   V FPI   +L++ +A  +   R   LY+LY + +H G +  GHY A 
Sbjct: 506 QFTQHMRRKLRDLVVFPIEGLDLSRIMAPDSDDGRSEMLYDLYGVVHHQGALSGGHYVAS 565

Query: 791 IKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           +K   + +W  F+D+ I  I++ DV  A+AY+LFY R
Sbjct: 566 LKSEFDGQWRLFNDAQIYEIHDRDVVDASAYILFYIR 602



 Score = 53.9 bits (128), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 5/67 (7%)

Query: 281 LGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLG----MVELLAFLLDGLHEDL 335
           L NTC++NS+IQCL HTP F  YF  + Y  +IN  NPLG    + ++ A L++ L +  
Sbjct: 17  LRNTCYLNSSIQCLSHTPIFREYFTSKAYLNDINTTNPLGHQGHLAQVSAVLINSLWKQF 76

Query: 336 NRVKHKP 342
           N+    P
Sbjct: 77  NQTPQVP 83


>gi|156365847|ref|XP_001626854.1| predicted protein [Nematostella vectensis]
 gi|156213745|gb|EDO34754.1| predicted protein [Nematostella vectensis]
          Length = 632

 Score =  221 bits (563), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 181/644 (28%), Positives = 281/644 (43%), Gaps = 125/644 (19%)

Query: 275 LTGLLNLGNTCFMNSAIQCLVHTPEFARYF-----REDYRREINWQNPLG----MVELLA 325
           LTGL N GNTCF+N+ IQCL HT   A YF     ++D +         G    + E LA
Sbjct: 1   LTGLKNHGNTCFINAIIQCLAHTDLLAEYFVMGGYKQDLKLRKGQIKKFGTKGEVTEKLA 60

Query: 326 FL-------------------------------------------LDGLHEDLNRVKHKP 342
            L                                           LD +HEDLNR   + 
Sbjct: 61  VLLKSLWYSEYSGEVSSEFKSVVGKHGAQYRGYSQHDAQEFLLWLLDIVHEDLNRATKRK 120

Query: 343 YIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMY 402
           Y  +KD  GR DE +A E   NH+  NDS ++D+ Q QY+S L CP C + S TFDPF+ 
Sbjct: 121 YKANKDNLGRSDECIATEALNNHLRCNDSFVLDLFQAQYRSALSCPKCKQKSTTFDPFLC 180

Query: 403 LSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKV 462
           LSLP+   + R + VT+     S  P    V+VP  G   DL   +  +  +  S  L +
Sbjct: 181 LSLPIPQRSLRPLLVTIVFVGASRAPLRIGVSVPISGSISDLCAAISEMTDIPCS-SLII 239

Query: 463 AEIQNHSIQR--FLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQ 520
            E+ +    R  + + P   LS I D D +  +  P+ +    F + +       P   +
Sbjct: 240 TELSSDGFNRRFYANQP---LSIIHDSDAIYGFEAPQRLGIHTFTETV-----ISPSLYR 291

Query: 521 TTSQWKAYGTPLVSSISRDDVISSGKIQST----VQRMLSPFLKKESLMHADSFDPSSMV 576
              +   +G P V  + ++  +S  K+Q+     + RML      +   H   F    M 
Sbjct: 292 CCCR---FGQPFVVHVLQE--LSFSKLQALFLHEMDRMLLDNADFQIKKHRQLFRLRVMN 346

Query: 577 TTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSS 636
                +G ++ +S  +     A+  + V L                + +E +  +R    
Sbjct: 347 GL---AGRSYLSSELDHPLYTATVERRVALLTHSDAPGSTGPAHIRMVLEWESELRNSCI 403

Query: 637 STSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLV 696
              +       Q   E++ +  ++N+  +F N        T  ++L  C E + ++E L 
Sbjct: 404 KPDV-------QDSPEEHTS--VQNVQNLFSN--------THAVNLDNCFELYTKDETLG 446

Query: 697 PEDMWYCPQCKERRQAS-KKLDLWRLPEVLVIHLKRFS-------YSRSMKHKLETFVNF 748
            +D W CP+CK+ +Q + KKL LW LPEVL+IHLKRF           S + KL T V F
Sbjct: 447 LDDAWLCPRCKKLQQGTVKKLSLWSLPEVLIIHLKRFRQLLFLQLQCPSGRTKLHTLVEF 506

Query: 749 PIHDFNLTKYVANKNS-----------------SRR--------QLYELYALTNHYGGMG 783
           P++D +++ ++  ++                  +RR         LY+LYA+ NH G M 
Sbjct: 507 PVNDLDMSPHLEPRHKIIPDTHSVLTNWPHWRRTRRSSGVAGEDNLYDLYAVCNHLGNMS 566

Query: 784 SGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            GHYTAH +   + +WY +DD+ +  +  + V + AAY+LFY R
Sbjct: 567 GGHYTAHCRNPTDGQWYLYDDTRVEQVPVNQVTTQAAYLLFYAR 610


>gi|334323386|ref|XP_003340388.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 43 [Monodelphis
           domestica]
          Length = 1100

 Score =  221 bits (562), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 170/605 (28%), Positives = 280/605 (46%), Gaps = 92/605 (15%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDYRREINWQNPLGMVELLAFLLDGLHE 333
           G  GL N GNTCFMN+ +QCL +T   A +    + +   W     + E LA    GL  
Sbjct: 103 GTQGLKNHGNTCFMNAVVQCLSNTDLLAEFLALGHYQA--WPGRAEVTEQLA----GLVR 156

Query: 334 DLNRVKHKPYIKSK-DADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNK 392
            L    + P++  +      P + +     +N  ++  S + +  Q QY+S+L CP C K
Sbjct: 157 SLWTQDYTPHLSVEFKPQPEPSKNLVQTLSSNQPSQRQSFVQNHFQAQYRSSLTCPHCQK 216

Query: 393 VSVTFDPFMYLSLPLQATTTRTMTVT-VFTSD-------GSALPSTYTVTVPKHGRCRDL 444
            S TFDPF+ +SLP+ +  TR++ VT VF S        G A+P   TV        R +
Sbjct: 217 QSNTFDPFLCVSLPIPSCQTRSLNVTLVFQSKSQMFLRIGLAVPLFSTVAT-----LRKM 271

Query: 445 IQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTIKDDDHLAAYRVP------K 497
           I   G I     + E+ + E+     QR F D+    L+ I D D++ A++ P       
Sbjct: 272 IAEEGKI----SANEVVLVELHPSGFQRSFFDEE--DLNCISDGDNVYAFQAPLSPIWGT 325

Query: 498 LVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSP 557
              + V L L+       P  +  +++    G+     I   +++ SG      +R   P
Sbjct: 326 PNAERVGLPLL-------PQTSTLSTESLTSGSGSKVLILLCNLVGSGH---KAKRFGPP 375

Query: 558 FLKKES-LMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDE 616
            L +E   +  D F    + +T+             + K++ S     +L    +++V  
Sbjct: 376 LLMREDRAISWDQFQ-QQVFSTIQ-----------CLMKKEVSLQSLGSL--FAVRVVGL 421

Query: 617 SNVC-----------FDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEV 665
           SNVC           F  +VE    +  P     I + ++W +   E +  +  E +++ 
Sbjct: 422 SNVCSYLSPQDGRPLFHWAVERSLKLSRPGGPPHIKLAIEWDKTTKELFFGNIQEEVVQD 481

Query: 666 FKNGPVTKKARTEP-LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEV 724
             +  + ++A  +P  +L  C + + +EE L P+D W CP CK  +Q   KL LW LP++
Sbjct: 482 APSVQLQQQAHLQPSCTLNECFQLYTKEEQLAPDDAWKCPHCKILQQGMVKLSLWTLPDI 541

Query: 725 LVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANK---------------------- 762
           L+IHLKRF      ++KL T V FP+   N+  +VA +                      
Sbjct: 542 LIIHLKRFCQVGERRNKLSTLVKFPLFGLNMAPHVAKRSLGQEHLMNSWPSWEQASCLPN 601

Query: 763 NSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYV 822
           N S   LY+LYA+ NH+G M  GHYTA+ +   + +WY++DDS + P++E++V +  AY+
Sbjct: 602 NCSFDFLYDLYAVCNHHGSMQGGHYTAYCRNSLDGQWYSYDDSTVEPVSEEEVSTRGAYI 661

Query: 823 LFYRR 827
           LFY++
Sbjct: 662 LFYQK 666


>gi|354500406|ref|XP_003512291.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 11 [Cricetulus
           griseus]
          Length = 1060

 Score =  220 bits (560), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 178/576 (30%), Positives = 255/576 (44%), Gaps = 130/576 (22%)

Query: 26  HFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSW 85
           +       A+  P  I+NS L  D           + + LLEG DY+LLP   WN L SW
Sbjct: 65  YVKGGDQDANTFPGCINNSGLFEDQI------NWHLREGLLEGDDYVLLPMTSWNYLVSW 118

Query: 86  YG---GGPTLARKVIS-SGLSQTELAVEVYPLRLQLLVMPRGECS-TIRISKKETIGELH 140
           YG     P + RKVI  SG+ +    VE+YP+ L L+     E + TI+ S  +++  + 
Sbjct: 119 YGLEDDQPPIERKVIEVSGIRK----VELYPIELLLVQHSDMETALTIQFSHSDSLDLVL 174

Query: 141 RRACSIFYLN-LEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNC 199
           + A   F +   E   +W          + +   TL DA+++  Q +++E   N +GT  
Sbjct: 175 QTAREQFLVEPQEDTRLWVKNSEGSLDRLCNTQITLLDASLETGQLVIMET-RNKDGT-- 231

Query: 200 KSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDN 259
                                          W +++    N+  E           + ++
Sbjct: 232 -------------------------------WPSAQLCGMNNMPE-----------EDED 249

Query: 260 TLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPL 318
             G  G+          GL NLGNTCFMNSA+QCL + P+   YF  + Y  E+N++NPL
Sbjct: 250 FQGQPGIC---------GLTNLGNTCFMNSALQCLSNVPQLTEYFLNNRYLEELNFRNPL 300

Query: 319 GMV-----------------------------------------------ELLAFLLDGL 331
           GM                                                ELL+FLLDGL
Sbjct: 301 GMKGELAEAYADLVKQTWSGYHRSIVPNVFKNKVGHFASQFLGYQQHDSQELLSFLLDGL 360

Query: 332 HEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCN 391
           HEDLNRVK+K Y++  D  GRPD  VA E W NH  RNDS+IVD   G +KSTLVCP C 
Sbjct: 361 HEDLNRVKNKEYVELCDGAGRPDLVVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCG 420

Query: 392 KVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNI 451
            VSVTFDPF YLS+PL  ++ R + V     D    P  + V VPK G   DL   L   
Sbjct: 421 NVSVTFDPFCYLSVPLPVSSRRVLEVFFVPMDPRRKPEQHRVVVPKKGNISDLCVALSTH 480

Query: 452 CSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTIKDDDHLAAYRVPKLVKKA------V 503
            S+   +++ VA++ +H   +   L+DP   LS+I D D +  Y V   ++        +
Sbjct: 481 TSVA-PDKMIVADVFSHRFYKLYQLEDP---LSSILDRDDIFVYEVTGRIEPVEGSRDDI 536

Query: 504 FLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRD 539
            + +  R + Q      +      +G PL+ S+ RD
Sbjct: 537 VVPVYLRERTQSRDFNNSYYGLILFGHPLLVSVPRD 572



 Score =  161 bits (407), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 83/194 (42%), Positives = 121/194 (62%), Gaps = 7/194 (3%)

Query: 638 TSIVVYVDWSQKLLEKYNTHFLENLLEVF-KNGPVTKKARTEPLSLYTCLEAFLREEPLV 696
           T   + +DW  ++  +Y   + E   E + K+  V    +  P+ L  C++ F   E L 
Sbjct: 711 TQPYIAMDWEPEMKRRY---YDEVEAEGYVKHDCVGYMLKKSPVQLQECIKLFTTVETLE 767

Query: 697 PEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLT 756
            E+ WYC  CK+ + A+KKLDLW LPEVL+IHLKRFS+S+  + KL+T V FPI D + +
Sbjct: 768 KENPWYCSSCKQHQLATKKLDLWMLPEVLIIHLKRFSFSKFSREKLDTLVQFPIRDLDFS 827

Query: 757 KYVAN-KNSSRRQL--YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINED 813
           ++V   KN S   +  Y+L A++NHYGGM  GHYT      D  +W+ FDD+ +SP+NE+
Sbjct: 828 EFVIKPKNESTPDMYKYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYFDDNSVSPVNEN 887

Query: 814 DVKSAAAYVLFYRR 827
            ++S AAYVLFY+R
Sbjct: 888 QIESKAAYVLFYQR 901


>gi|301107127|ref|XP_002902646.1| ubiquitin-specific protease, putative [Phytophthora infestans T30-4]
 gi|262098520|gb|EEY56572.1| ubiquitin-specific protease, putative [Phytophthora infestans T30-4]
          Length = 1492

 Score =  220 bits (560), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 249/950 (26%), Positives = 389/950 (40%), Gaps = 226/950 (23%)

Query: 1    WWQHWIDYVNQDQPNNTGDGS---------SLLE-----HFNSAGSSAS----------K 36
            WW+ W DYV+ D  N +  GS         +++E       N A  SAS           
Sbjct: 418  WWRKWCDYVSMDPKNGSPYGSLPVPLIPPTTVVEVARNIRGNIALRSASYSGDGSSNRPP 477

Query: 37   RPSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKV 96
            RP  I N  L+  + +        +   L+  RDY  +P +V   L SWY GGP L R +
Sbjct: 478  RPGPIANWSLLMQSGSR------RLKQKLVLARDYYTIPSQVNTVLFSWYSGGPDLVRSI 531

Query: 97   IS-SGLSQTELAVEVYPLRLQLLVMPRGECSTIRISKKETIGELHRRA------CSIFYL 149
            +     ++ EL +E++PL L++  +     S IR  ++  + EL   A      C    L
Sbjct: 532  VEVPTQTEPELQIELFPLVLRVARVDPSNGSVIRSGEEILLSELSTPASLLEATCRALLL 591

Query: 150  N--LEQICIW-------DYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCK 200
               +++  +W       DY    +    +++ +   D  +      + E L    G   +
Sbjct: 592  LKLMDKARLWYFNDKAPDYKIRLRDEYPDELKKLTQDTALANRHKEMAEWLKARPGAASR 651

Query: 201  SSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNT 260
               +++             PS  +  I    +  +   +      + SP +    + D  
Sbjct: 652  KRQREH------------RPSMRTSDICSRGNLGEALGQRGPGSEAGSPTI----EVDPV 695

Query: 261  LGSSGVTTR---GA--SVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFR-EDYRREINW 314
            L S  V  R   GA    GL GL NLGNTC+M+SA+QCL HT     YF+ E Y ++IN 
Sbjct: 696  LASPVVRKRFSKGAFKGPGLVGLDNLGNTCYMSSALQCLSHTRLLVEYFKNEAYLKDINL 755

Query: 315  QNPLG--------MVELLAFLLDG------------------------------------ 330
            +N  G          ELL  L                                       
Sbjct: 756  RNRDGTNGKLTAAFGELLRILWTSDRKRLAPNEFKKVLAKCNPQFAGSDQHDAQELLACL 815

Query: 331  ---LHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVC 387
               L EDLNRV  KPY +  D+DGRPD  VA+E+W NH  R  S+IV +  GQYKS L C
Sbjct: 816  LSSLSEDLNRVVKKPYTEQPDSDGRPDALVAEEWWQNHQKREFSVIVALFTGQYKSLLEC 875

Query: 388  PVCNKVSVTFDPFMYLSLPLQATTTRTMTVT-VFTSDGSALPSTYTVTVPKHG----RCR 442
             VC   S  F+PF +L L L  + +R++ +T +F +D   +P  ++V V K+G    + +
Sbjct: 876  SVCRYESARFEPFTFLQLSLPESNSRSIVLTIIFCTD--RVPLRFSVRV-KNGDTVKKIK 932

Query: 443  DLIQV-LGNI----CSLKQSEE---------------LKVAEIQN-HSIQRFLDDPLISL 481
            D +   L N+     SL + EE               + +A   + H+++  LDD L  L
Sbjct: 933  DEVAAFLDNMEKARSSLPEMEEKVENKELSREGDWTKVVIARTSDQHTVETLLDDNL-PL 991

Query: 482  STIKDDDHLAAYRV-------------PK-------------------LVKKAVFLQLIH 509
            + I + D L A+++             PK                    V+ +V+ + + 
Sbjct: 992  TQIHEKDQLTAFQLDRDDDSLPPQQVSPKPAELQDDATSLDTADQASASVRASVYPKKVT 1051

Query: 510  RLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADS 569
            R    EP            G P+    S +    +G ++ T      P    +S+   D 
Sbjct: 1052 RNGSAEP----------VNGKPVNGKASLN---GNGNVKKT--HGCEPPTPTDSVDAYDE 1096

Query: 570  FDP---------SSMVTTVDPSGEAHS----NSSSNIAKEDASSSKAVTLPNLPLQLVDE 616
             DP         +S+   +D + +  +     SS+N    + S S  V   ++PL  V E
Sbjct: 1097 SDPDDDELLPIGTSVYIRIDKTKDTAAARVIGSSANSGVVNVSYSTGVRRYHIPLSKVIE 1156

Query: 617  --SNVCFDLSVEGDKTIRIPSSSTSI------------VVYVDWSQKLLEKYNTHFLENL 662
               N  F   V      R+  S+ S              V +DW  + L++       + 
Sbjct: 1157 RHQNDAFIFLVHR----RVERSTDSFTNAHITRLFAEETVAIDWDIRTLKEEYDPIQASK 1212

Query: 663  LEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLP 722
            ++   +    ++   +PL+L  C+E F  +E  +PE   YC  CK  R A+KK+DLWRLP
Sbjct: 1213 MDFDASVQQHQRQDNQPLNLAHCMEIFTAKE-TIPEA--YCGHCKTLRPATKKMDLWRLP 1269

Query: 723  EVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYEL 772
             +LVIHLKRF +++  + KL   V+FP+       +VA K   R +L  L
Sbjct: 1270 PLLVIHLKRFCFTQVSRRKLHHLVDFPLRGLQFGDFVARKREPRGRLSGL 1319



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 39/59 (66%)

Query: 769  LYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            LY+LYA+ NH G +G GHY A++    + +W  F+D     I+E +V S+ AY+LFYRR
Sbjct: 1376 LYDLYAVVNHVGALGGGHYFAYVLSDHDGKWKCFNDHQCKDIDEKEVVSSMAYILFYRR 1434


>gi|47211964|emb|CAF96183.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 609

 Score =  219 bits (559), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 138/364 (37%), Positives = 189/364 (51%), Gaps = 53/364 (14%)

Query: 246 STSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFR 305
           ++S +L S     N+   S  + +    GL GL NLGNTCFMNSA+QCL + P    YF 
Sbjct: 190 NSSYSLPSYHPYSNSYDYSDQSRQSERSGLCGLSNLGNTCFMNSAVQCLSNIPPLTEYFL 249

Query: 306 ED-YRREINWQNPLGMV------------------------------------------- 321
           +D Y  E+N  NPLGM                                            
Sbjct: 250 KDKYTDELNEDNPLGMKGEIARAYAELIKQIWSGKYSYVTPRPFKTQVGRFAPQFSGYQQ 309

Query: 322 ----ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVC 377
               ELLAFLLDGLHEDLNR++ KPYI+ KDA+GRPD+ VA+E W NHI RNDSIIVD+ 
Sbjct: 310 QDSHELLAFLLDGLHEDLNRIRKKPYIQLKDANGRPDKVVAEEAWENHIKRNDSIIVDIF 369

Query: 378 QGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPK 437
            G +KSTLVCPVC KVSVTFDPF YL+LPL     RT+ V +   D  A P+ Y +TVPK
Sbjct: 370 HGLFKSTLVCPVCFKVSVTFDPFCYLTLPLPMKKERTLEVYLVRLDPLAKPTQYKLTVPK 429

Query: 438 HGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTIKDDDHLAAYRVP 496
            G   DL   L N+  +  ++++ V +I NH   R F  +  +S    +DD ++    V 
Sbjct: 430 VGYISDLCYSLSNLSGVP-ADKMIVTDIYNHRFHRIFATNENLSSIMERDDIYVFELAVN 488

Query: 497 KLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLS 556
           ++      +  +H L+E+   +    +    +G P + ++ R   +S  K  + +   L 
Sbjct: 489 RVEDTDHVVVPVH-LREKYKQSGYNHTSTTLFGLPFLIAVPR--TLSEDKFYNMLLLRLC 545

Query: 557 PFLK 560
            F+K
Sbjct: 546 RFVK 549


>gi|293336267|ref|NP_001170334.1| uncharacterized protein LOC100384307 [Zea mays]
 gi|224035167|gb|ACN36659.1| unknown [Zea mays]
          Length = 423

 Score =  219 bits (558), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 136/361 (37%), Positives = 203/361 (56%), Gaps = 31/361 (8%)

Query: 415 MTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFL 474
           MTVTVF++DGS  P +Y V+VPK G   DL+Q L  +C L   E L V E+ N+ I R+L
Sbjct: 1   MTVTVFSTDGSREPCSYDVSVPKFGTLSDLVQALSIVCLLGDDEILLVTEVYNNCIIRYL 60

Query: 475 DDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVS 534
           ++P  S+S ++D D LAAYR+PK  +K+  +   H+   Q       T Q + +  PL++
Sbjct: 61  EEPSDSVSLLRDGDKLAAYRLPKRHEKSPLVVFTHQHFVQHSSDGNLTPQMREFEAPLLA 120

Query: 535 SISRDDVISSGKIQSTVQRMLSPF-LKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNI 593
           ++  +  IS   +Q    ++LSPF L   +    D  + +S   +VD   ++ S +  N 
Sbjct: 121 ALPEE--ISGLSLQDIYLKLLSPFQLSNGASSLNDCMESNS--DSVDTPSDSGSINFQNS 176

Query: 594 AKEDA-----SSSKAVTLPNLPLQLVD-------ESNVCFDLSVEGDKT----------- 630
             ED       S+    +   P  L D       E+++ F+  ++ ++            
Sbjct: 177 QLEDGPESNHCSASECEVTKGPDDLYDGVSGSNKEAHMDFEFYLKSERGEGQQQKIEINE 236

Query: 631 --IRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEA 688
             + + ++ + + V V W Q    KY T  L NL E+ K   +  K   + ++L+ CLEA
Sbjct: 237 LHLLLETAPSRLHVNVHWLQNASRKYATSMLNNLPEIHKL-ELIPKGTEDSVALHGCLEA 295

Query: 689 FLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNF 748
           FL+EEPL PEDMWYCP+CK+ +QA KKLDLWRLPEVLVIHLKRFSY++  ++KLETFV+F
Sbjct: 296 FLKEEPLGPEDMWYCPRCKKHQQAMKKLDLWRLPEVLVIHLKRFSYTQFTRNKLETFVDF 355

Query: 749 P 749
           P
Sbjct: 356 P 356


>gi|395546304|ref|XP_003775029.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 11-like
           [Sarcophilus harrisii]
          Length = 935

 Score =  219 bits (558), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 189/600 (31%), Positives = 260/600 (43%), Gaps = 146/600 (24%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W+Q W  YV        GD  S            S  P  ++N++L  D           
Sbjct: 18  WYQQWEAYVR------GGDQDS------------SAFPGPVNNAELFEDQETW------R 53

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L+EG DY+LLP   W+ L +WYG   G P + RKV+   L  T   VEVY + L L
Sbjct: 54  LKERLVEGEDYVLLPAMAWHLLVNWYGLEPGQPPIERKVVE--LPSTH-KVEVYLVELLL 110

Query: 118 LVMPRGECS-TIRISKKETIGELHRRACSIFYLNL-EQICIWDYYGHRKHALMNDMDRTL 175
                 E S   + S+ + +  +   A   F +   E+  +W      K+A         
Sbjct: 111 CQHNDMEISRPAQFSRADPVELVLHTAREQFLVGPDEETRLW-----VKNA--------- 156

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            D + +  ++I + VLD   G                   V++E         G W +S+
Sbjct: 157 -DGSCERLRNIHMSVLDACLGP---------------GQVVIMETRNKD----GTWPSSR 196

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
                  S+           + D   G  GV          GL NLGNTCFMNSA+QCL 
Sbjct: 197 PHIMKSVSD-----------EEDGFRGQPGV---------CGLTNLGNTCFMNSALQCLS 236

Query: 296 HTPEFARYFRED-YRREINWQNPLGMV--------------------------------- 321
           + P    YF  + Y +E+N+ NPLGM                                  
Sbjct: 237 NVPPLTEYFLHNHYLKELNFCNPLGMKGEIAEAYADLVKQAWSGHHRSVVPRMFKTKVGH 296

Query: 322 --------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELL+FLLDGLHEDLNRVK K Y++ +DA GRPD+EVADE W NH  
Sbjct: 297 FASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVELRDAAGRPDQEVADEAWRNHKR 356

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDS+IVD   G +KSTLVCP C KVSVTFDPF YLS+PL  +  R M V   + D    
Sbjct: 357 RNDSVIVDTFHGLFKSTLVCPECGKVSVTFDPFCYLSVPLPVSKERGMEVFFVSMDPRRK 416

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTIK 485
           P  + + VPK G+  DL   L     +   + + VA++ +H   +   L++   SLS I 
Sbjct: 417 PEQHRLVVPKAGKVLDLCVALAKHTGV-SPDRMMVADVFSHRFYKIYQLEE---SLSCIL 472

Query: 486 DDDHLAAYRVPKLVKKAVF----LQLIHRLQEQEPGAAQTTSQW--KAYGTPLVSSISRD 539
           D D +  Y V             + L   L+E+ P    + S +    +G PL+ S+ RD
Sbjct: 473 DRDDIFVYEVSGGAGGGEGTGEDVVLPVYLRERTPARDYSDSYYGLMLFGHPLLVSVPRD 532



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 79/190 (41%), Positives = 116/190 (61%), Gaps = 7/190 (3%)

Query: 642 VYVDWSQKLLEKY-NTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
           + +DW   + ++Y N    E  ++    G V +KA   P+ L  C+E F   E L  E+ 
Sbjct: 712 IAIDWEPDMKKRYYNEVEAEGYVKHDCMGYVLRKA---PVRLQECIELFTTVETLEEENP 768

Query: 701 WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
           WYCP CK  + A+KKLDL  LPE L+IHLKRFSY++  + KL+T V FPI D + ++++ 
Sbjct: 769 WYCPTCKRHQLATKKLDLGALPEALIIHLKRFSYTKFSREKLDTLVEFPIRDLDFSEFII 828

Query: 761 NKNSSRRQL---YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKS 817
              +        Y+L A++NHYGG+  GHYT   +  D  +W+ FDDS +SP++E  ++S
Sbjct: 829 KPRTEADPTPCKYDLIAVSNHYGGLRDGHYTTFARNKDSGQWHYFDDSSVSPVSESQIES 888

Query: 818 AAAYVLFYRR 827
            AAYVLFY+R
Sbjct: 889 KAAYVLFYQR 898


>gi|60360516|dbj|BAD90502.1| mKIAA4085 protein [Mus musculus]
          Length = 512

 Score =  219 bits (557), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 178/564 (31%), Positives = 252/564 (44%), Gaps = 130/564 (23%)

Query: 38  PSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLAR 94
           P  I+N+ L  D  +        + + LLEG DY+LLP   WN + SWYG   G P + R
Sbjct: 1   PGCINNAGLFEDQISW------HLRERLLEGDDYVLLPAPAWNYMVSWYGLMDGQPPIER 54

Query: 95  KVIS-SGLSQTELAVEVYPLRLQLLVMPRGECS-TIRISKKETIGELHRRACSIFYLN-L 151
           KVI   G+ +    VEVYPL L L+     E + TI+ S  +++  + + A   F +   
Sbjct: 55  KVIELPGIRK----VEVYPLELLLVQHSDMETALTIQFSYTDSVELVLQTAREQFLVEPQ 110

Query: 152 EQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEK 211
           E   +W          + +   TL DA ++  Q +++E   N +GT              
Sbjct: 111 EDTRLWTKNSEGSLDRLCNTQITLLDACLETGQLVIMET-RNKDGT-------------- 155

Query: 212 KASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGA 271
                              W +++    N+  +           + ++  G  G+     
Sbjct: 156 -------------------WPSAQLCGMNNIPD-----------EDEDFQGQPGI----- 180

Query: 272 SVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM---------- 320
                GL NLGNTCFMNSA+QCL + P+   YF  + Y  E+N++NPLGM          
Sbjct: 181 ----CGLTNLGNTCFMNSALQCLSNVPQLTEYFLNNRYLEELNFRNPLGMKGELAEAYAD 236

Query: 321 -------------------------------------VELLAFLLDGLHEDLNRVKHKPY 343
                                                 ELL+FLLDGLHEDLNRVK K Y
Sbjct: 237 LVKQTWSGYHRSIVPNVFKNKVGHFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEY 296

Query: 344 IKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYL 403
           ++  +  GRPD EVA E W NH  RNDS+IVD   G +KSTLVCP C  VSVTFDPF YL
Sbjct: 297 VELCNGAGRPDLEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYL 356

Query: 404 SLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVA 463
           S+PL   + R + V     D    P  + V VPK G   DL   L    S+   +++ VA
Sbjct: 357 SVPLPVCSRRVLEVFFVPMDPRRKPEQHRVVVPKKGNISDLCVALSTHTSVA-PDKMIVA 415

Query: 464 EIQNHSIQRF--LDDPLISLSTIKDDDHLAAYRVPKLVKKAVF----LQLIHRLQEQEPG 517
           ++ +H   +   L+DP   LS I D D +  Y V   ++        + +   L+E+ P 
Sbjct: 416 DVFSHRFYKLYQLEDP---LSGILDRDDIFVYEVTGRIEPVEGSRDDIVVPVYLRERTPS 472

Query: 518 AAQTTSQWK--AYGTPLVSSISRD 539
                S +    +G PL+ S+ RD
Sbjct: 473 RDYNNSYYGLILFGHPLLVSVPRD 496


>gi|195999830|ref|XP_002109783.1| hypothetical protein TRIADDRAFT_53019 [Trichoplax adhaerens]
 gi|190587907|gb|EDV27949.1| hypothetical protein TRIADDRAFT_53019 [Trichoplax adhaerens]
          Length = 921

 Score =  218 bits (555), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 177/648 (27%), Positives = 285/648 (43%), Gaps = 111/648 (17%)

Query: 268 TRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF----------------------- 304
           T G   G++GL N GNTCFMN+ +QCL +T   A+YF                       
Sbjct: 163 THGKVPGVSGLRNHGNTCFMNAIVQCLCNTDSLAKYFVLGEYKMDVKRRKKSKNLTTNGE 222

Query: 305 ---------------REDYRREINWQNPLGMV-------------ELLAFLLDGLHEDLN 336
                          R D +   +++  +G               E L +LLD +HEDLN
Sbjct: 223 LTEQIAVLLKGMWTCRYDAQMSSDFKAVVGKYCSQYRGSNQHDAQEFLLWLLDKIHEDLN 282

Query: 337 RVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVT 396
           R     Y  +KD+ GRP E VA E  AN+   NDS ++D  Q   +S+L CP CN+ S T
Sbjct: 283 RAVKSKYKATKDSVGRPVEAVAAEVLANYCRCNDSFVLDTFQAYLRSSLTCPSCNQQSNT 342

Query: 397 FDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQ 456
           FDPF+ +SLPL    TR ++ TV   D       + V +        L ++     ++K 
Sbjct: 343 FDPFLCVSLPLLQRDTRFVSATVVYYDLLKQCCRFGVDISPDETVDSLCKIFSQQTNIK- 401

Query: 457 SEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEP 516
            E + VA +  + I+R L    + +  I  +D      +P  +  A  ++   R      
Sbjct: 402 PELMLVASVDYYGIRRLLSSKDLVMD-ISSNDTCYIMELPNCIDDA--METTDRANIAPK 458

Query: 517 GAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKK----ESLMHADSFDP 572
              +T  +     T  +  I+R     SG   +   R ++    +    E L  A     
Sbjct: 459 ATEETYQEVNNSETIAIVIINRR---GSGYTATRFGRPVAFRCHRNISYEDLAKAILRKI 515

Query: 573 SSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPN----LPLQ--LVDESNVCFDLSVE 626
           S  +T  +     +SN +   A    +++K + L N     PLQ  ++D +     LSV 
Sbjct: 516 SETLT--ERINYEYSNDNPPFALRLVNATKDLGLLNQTDEYPLQNQIIDRA-----LSV- 567

Query: 627 GDKTIRIPSSSTSIVVYVDWSQKLLEK------YNTHFLENLLEVFKNGPVTKKARTEP- 679
                   +  + I + ++W  ++ +K      ++   +  +  V +  P+      E  
Sbjct: 568 ------CKNCPSHIELMIEWDAEMKDKDELINLFSETHIRIIGCVIEEKPIEDITVAEKG 621

Query: 680 -----LSLYTCLEAFLREEPLVPEDMWYCPQC-KERRQASKKLDLWRLPEVLVIHLKRFS 733
                ++LY CL+ + +EE L  +  W C  C K +R  +K L +W LPEV+++HLKRF 
Sbjct: 622 NFPSSITLYDCLKIYTKEEKLCEDSEWNCSACHKVQRGITKTLSMWTLPEVMIVHLKRFK 681

Query: 734 YSRSMKHKLETFVNFPIHDFNLTKYVA--------------NKNSSRRQ--LYELYALTN 777
              +   KL   V+FPI   +++ ++               N+   R Q  +Y+LYA+ N
Sbjct: 682 QIGAHFTKLHDIVSFPIVGLDMSDFIGRPDSDDMHSYGSYRNQRDFRHQSSIYDLYAVCN 741

Query: 778 HYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
           H+G MGSGHYTA  +     RWY+FDD+ +  ++ D + +  AY+LFY
Sbjct: 742 HHGNMGSGHYTACCRNPSNGRWYSFDDARVEEVSSDFIVTNDAYILFY 789


>gi|170579604|ref|XP_001894903.1| Ubiquitin carboxyl-terminal hydrolase family protein [Brugia malayi]
 gi|158598337|gb|EDP36250.1| Ubiquitin carboxyl-terminal hydrolase family protein [Brugia malayi]
          Length = 1137

 Score =  217 bits (553), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 227/915 (24%), Positives = 376/915 (41%), Gaps = 209/915 (22%)

Query: 1    WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLV-----NDATAEDP 55
            WW+ W+                       A  S SK P  I+N+ ++     ND + + P
Sbjct: 316  WWRQWV----------------------HALMSNSKVPP-INNASIITVKQKNDWSYKVP 352

Query: 56   ---GAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGG----GPTLARKVISS------GLS 102
                 G  +   L+  +D+  +   +W  L  W+G     G +L R+++ +       ++
Sbjct: 353  SLSNEGAPLAQNLVINKDFEAVAPCLWKALLRWHGSAAREGISLQRRILPARIVDPTAVN 412

Query: 103  QTELAVEVYPLRLQLLVMPRGEC------STIRISKKETIGEL------HRRACSIFYLN 150
             T+  +E+YPL   LL++  G        S    +K+ ++  L        R C+I  L 
Sbjct: 413  STKPIIELYPL--TLLILRHGTATGGWLHSAFEWNKESSLRRLPWCVVSESRICTIEEL- 469

Query: 151  LEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAE 210
            LE +       H+ H  ++D++ +     +++D      +LDN        S+  N    
Sbjct: 470  LELL------AHQLH--ISDVE-SARLWTVEIDGSPCKRLLDN-------DSVTLNDLKI 513

Query: 211  KKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRG 270
            ++++ +L+E   + +S    W                 P   S  +S N  G +   +  
Sbjct: 514  QQSAQLLLELRNADMS----W-----------------PEEVSCLESSNAEGYTTDNSDS 552

Query: 271  ASV-GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV------- 321
            + + G+TGL N+GNTC+MNSA+QCL +T     YF E  ++ ++      GMV       
Sbjct: 553  SYILGITGLYNMGNTCYMNSALQCLSNTRPLTNYFIEGRHKDDMKRLKSKGMVAMEYANV 612

Query: 322  -------------------------------------ELLAFLLDGLHEDLNRVKHKPYI 344
                                                 E L+ LLD LHEDLN++++KP+I
Sbjct: 613  VKELWSGKKRNIAPIKLRDAIRCAGPVFAERSQHDCQEFLSILLDLLHEDLNQIENKPFI 672

Query: 345  KSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLS 404
            +  D+DGRPD  VA E W  H+ R+ SIIVD+  GQ +STL C  CN +S  FD F  L 
Sbjct: 673  ELNDSDGRPDSIVAKEAWDAHLKRDKSIIVDLFTGQLRSTLTCLNCNAISCRFDAFTCLQ 732

Query: 405  LPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLK----QSEEL 460
            LP+       ++V V   DG  +P  Y   +            L N   L     Q   L
Sbjct: 733  LPIPIDHLLLISVVVVKRDGQ-IPIRYAFRLSCDTTIGMFKMKLANASGLLSNSFQILCL 791

Query: 461  KVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPK---------LVKKAVFLQLIHRL 511
              A      +   +DD   S++   +D  L A+ +P           V     +    ++
Sbjct: 792  NRAGQMMQGVSESVDDDNSSINVYPNDALLYAFELPAEEDQSNSECFVAAPTVIAAHRKM 851

Query: 512  QEQEP---GAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHAD 568
            Q  +    GA +  +  + +G PL+   +     +  K+   V   +S FLK  S     
Sbjct: 852  QYNDSYLLGATRGCTA-RVFGVPLILRFTPGKT-TGNKLYEEVWLHVSRFLKNGS----- 904

Query: 569  SFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGD 628
                         +G+      +N A + A   +       P  L      C  LS E  
Sbjct: 905  -------------AGKQQRTREANRAIDAAEDIRN----GYPFDL-----CCVKLSFEWC 942

Query: 629  KTIRIPSSSTSIV--------------VYVDWSQKLLEKYNTHFLENLLEVFKNGPVTK- 673
                 P+     V              V +DW    L     H +E L     +G V + 
Sbjct: 943  SKCAWPAFCRGCVILSNDEIIEDNLMAVAIDWKPTALYLRYQHSVELLCR--DDGSVLQA 1000

Query: 674  -KARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF 732
             +    P SL +CL  F++ E L  +D+  C  C ++   +K L +WRLP++L+IH KRF
Sbjct: 1001 WEVHYRPCSLVSCLNDFMQAERL--DDVIMCKPCGKKCPTTKALAIWRLPKILIIHFKRF 1058

Query: 733  SYSRSMKHKLET--FVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAH 790
               +S +  +++   V+FP+ + +L +++ + +      Y  +A+ NHYG M SGHY A+
Sbjct: 1059 VCVKSERRWMKSCKVVDFPLENLDLREWLRDPDVKTSTKYSCFAIANHYGAMASGHYVAY 1118

Query: 791  IKLLDENRWYNFDDS 805
             K  + N+W++F+DS
Sbjct: 1119 AK--NNNQWFSFNDS 1131


>gi|167534029|ref|XP_001748693.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772934|gb|EDQ86580.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1086

 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 216/774 (27%), Positives = 334/774 (43%), Gaps = 131/774 (16%)

Query: 165  HALMNDMDRTLDDANIQMD-QDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKS 223
            H L   +    D+ NIQ   QD+ +  L  V  T+ K++I D         + L E    
Sbjct: 290  HPLKFRVAAVTDNDNIQSKLQDLSISRLKTV--TDLKAAILDQFDVPGTVEARLWEYQAR 347

Query: 224  SLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSS------------GVTTRGA 271
              S + G + +   S N S  IS++ + A+   S    GS+            G +T G 
Sbjct: 348  QCS-SSGQTVAAVPSYNSSGGISST-SYANGTGSGYGPGSTLTNRSYGYSSNYGTSTYGG 405

Query: 272  SVGL----------TGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM 320
            S G           TGL NLGNTCFMNSA+QCL H  +  ++F    +++++N  NP+G 
Sbjct: 406  SYGRASNKPILPGRTGLRNLGNTCFMNSALQCLSHCADLRQFFLSGRWQQDLNKNNPIGC 465

Query: 321  -----------------------------------------------VELLAFLLDGLHE 333
                                                            EL AFLLDGLHE
Sbjct: 466  DGHLAEAYAELLEKLWSATQADVSPWHLKDTISKFAPQFSGYQQHDSQELTAFLLDGLHE 525

Query: 334  DLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKV 393
            DLNR++ KP++++K+A+G  D   A E W  H+ RNDSIIVD+ QGQ KSTL CP CNK+
Sbjct: 526  DLNRIQKKPFVEAKEAEGE-DVTAAREAWTRHLLRNDSIIVDLFQGQIKSTLNCPECNKI 584

Query: 394  SVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVP-KHGRCRDLIQVLGNIC 452
            SVTFDP MYLS+P+    T   T+TV  +D    P+  TV +P K G  R++I  +    
Sbjct: 585  SVTFDPMMYLSVPIPELDTTFFTITVVFADPRRAPAKCTVELPAKSGTMREMIAAVAEET 644

Query: 453  SLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQ 512
            ++ +   L   ++ +    +  D    ++  I + D +A + VP L + A +   +  + 
Sbjct: 645  AV-EPRSLVATDLYHSRFYKIFDG-HDTMGNITNGDDVAIFEVPPL-EGASWSDEVIPVY 701

Query: 513  EQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDP 572
                G A T+S +       + +     +I  G   +T +++L+    K S  +A S   
Sbjct: 702  HMRQGRAFTSSYYSTSYAAAMETTGFPFLIRPGP-DTTGRQLLAAIADKASQYYAPSHPE 760

Query: 573  SSMVTTVDPSGEAHSNSSSNIAKEDASSS---------KAVTLPNLPLQLVDESNVCFDL 623
            SS     D S   + ++ S   +EDA  S           V   N P Q  + S V    
Sbjct: 761  SS--DEEDASEGQNEDAPSMDTREDAEDSDDEFDRELQANVQAANAPAQGNETSKVVEKA 818

Query: 624  SVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLY 683
            +         P+ +    VY   S+     Y+   L   L++  + PV  K     + LY
Sbjct: 819  AAPFKSQPPRPAVTELFEVYS--SESRTSTYSR--LGPSLDLDTDEPVDIKRHV--IQLY 872

Query: 684  ---------TCLEAFLREEPLVPEDMWYCPQCK-------ERRQASKKLDLWRLPEVLVI 727
                        EA L +    P  + Y    K       ER  AS  L   R      I
Sbjct: 873  WEREDAENLLSTEAVLTQAESAPSHVSYTAARKNKHNNVDERDAASVSL---RECVERYI 929

Query: 728  HLKRFSYSRS--MKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSG 785
              +R +   +   + K++T V FP+   +++ YV +       +Y+ +A++NH GG G G
Sbjct: 930  QKERLTADNTCFYRDKIDTLVEFPLEGLDMSPYVLSPKHREGAIYDCFAVSNHSGGYGGG 989

Query: 786  -----------HYTAHIKLLDEN-RWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
                       HY      LDE+  W ++DD+ ++P+  + + +  +Y+LFYRR
Sbjct: 990  HLLTDAGYWMRHYIDTAYALDESGAWCDYDDAWVTPMRTNQIVTTESYMLFYRR 1043


>gi|330822614|ref|XP_003291744.1| hypothetical protein DICPUDRAFT_50006 [Dictyostelium purpureum]
 gi|325078064|gb|EGC31737.1| hypothetical protein DICPUDRAFT_50006 [Dictyostelium purpureum]
          Length = 984

 Score =  216 bits (551), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 138/407 (33%), Positives = 186/407 (45%), Gaps = 105/407 (25%)

Query: 65  LLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEV-YPLRLQLLVMPRG 123
           + E +D+  +P++VWN+L   YGGGPT+ RKV  S +    + +++ +PL++ +      
Sbjct: 130 VCENKDFATVPEKVWNKLQKIYGGGPTVTRKVSKSLIGNLIIDLKIPFPLKV-MKSSATS 188

Query: 124 ECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMD 183
           E       K ETI     RAC +  +    + IWDYY + KHA + D +   +   I+  
Sbjct: 189 EVFDCYAFKSETIKVFKERACKLLNVEPINVRIWDYYNNNKHAELKDQEYVSNSNLIENQ 248

Query: 184 QDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSS 243
             +L E L N                                   G W       + +S+
Sbjct: 249 LILLDERLPN-----------------------------------GKWPQQADRYQTYST 273

Query: 244 EISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARY 303
                    S  D D               G+TGL NLGNTCFMNSA+QCL +T    +Y
Sbjct: 274 N--------SRGDGD------------KRPGITGLGNLGNTCFMNSALQCLSNTYPLTKY 313

Query: 304 FRED-YRREINWQNPLGM------------------------------------------ 320
           F  + Y ++IN  NPLG                                           
Sbjct: 314 FFTNKYEKDINKDNPLGCGGELATEYASLISDIWEGNRTSVYPRNFKSQIERFAPQFAGY 373

Query: 321 -----VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVD 375
                 ELLAFLLDGLHEDLN+VK KP+ + KD D RPDE +A+E W  H+ARNDS+IVD
Sbjct: 374 HQHDSQELLAFLLDGLHEDLNKVKKKPFFEGKDYDERPDEVIANEQWGMHVARNDSVIVD 433

Query: 376 VCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTS 422
             Q Q KS LVCP C K+S+TFDPFMYLSLPL +   +  T +   S
Sbjct: 434 WFQAQLKSKLVCPDCGKISITFDPFMYLSLPLPSEINKQFTYSYINS 480



 Score =  164 bits (414), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 82/176 (46%), Positives = 111/176 (63%), Gaps = 19/176 (10%)

Query: 667 KNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLV 726
           KNG V +      + L  C++ F  EE L PED WYC  CK+ ++A KK D+W  P +LV
Sbjct: 748 KNGGV-RDVSPYNVDLEQCIDLFTTEEQLGPEDPWYCSNCKKHQRAFKKFDIWSAPPILV 806

Query: 727 IHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGH 786
           +HLKRFSY +  + KL+T V FPI D +L+KYV +KN     +Y+L+A++NHYG +G GH
Sbjct: 807 VHLKRFSYKKHYRDKLDTLVKFPIKDLDLSKYVLSKNQP-PPIYDLFAVSNHYGSLGGGH 865

Query: 787 YTAHIKLLDE---------------NRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           YTA+   L+E                +WY FDDSH+S  N ++V+S AAYVLFYRR
Sbjct: 866 YTAYA--LNEPETKEAKANGNSNGNGKWYKFDDSHVSEANVENVESEAAYVLFYRR 919


>gi|340371267|ref|XP_003384167.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 32-like
           [Amphimedon queenslandica]
          Length = 1159

 Score =  216 bits (551), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 166/577 (28%), Positives = 261/577 (45%), Gaps = 102/577 (17%)

Query: 266 VTTRGASV--GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLGMV- 321
           V ++G  V  G TGL NLGNTCFMNS++QC+ +      YF+E DY  EIN QNPLGM  
Sbjct: 370 VKSQGTKVPEGATGLSNLGNTCFMNSSLQCISNLQPLTTYFKEKDYLLEINKQNPLGMKG 429

Query: 322 ----------------------------------------------ELLAFLLDGLHEDL 335
                                                         ELL+F+LDGLHEDL
Sbjct: 430 VMAKRYGELVSDLWTGHSKSITPWRFRYTIAQNAPQFNNFQQQDAQELLSFVLDGLHEDL 489

Query: 336 NRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSV 395
           NRVK KPY +  D+D RP  EVADE W+ H  RN+SIIVD+ QGQ KS + C VC+  S+
Sbjct: 490 NRVKVKPYRELPDSDDRPIAEVADEAWSYHRERNNSIIVDLFQGQLKSLVECTVCSYKSI 549

Query: 396 TFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLK 455
            FDPF +LSLPL   ++ ++ + V   DGS  P+ Y + +    + R L + L  +C + 
Sbjct: 550 KFDPFTFLSLPLPLESSTSLEIIVIPIDGSQ-PTRYCLKLELDAKYRLLKEQLVEMCQIN 608

Query: 456 QSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQE 515
           +   L + ++   +++ F +D     + +     L AY +P   ++        R +EQ 
Sbjct: 609 R---LILVDVYGGTVRSFPNDDQKMRTVLSGS--LYAYEIPPHYRRIT----PSREEEQP 659

Query: 516 PGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTV----QRMLSPFLKKESLMHADSFD 571
               +T  + +        S S+++  +  ++++T     Q   +P  + ES   A   +
Sbjct: 660 LERTETNDEGEESINKGEESTSKEEAEAPTEVETTKEEIEQETKTPTEEVES--SAKGAE 717

Query: 572 PSSMVTTVDPSGE------------------------------AHSNSSSNIAKEDASSS 601
             +  T    +GE                              A +   S + KE  +  
Sbjct: 718 SDTPTTNKVENGEIGGSLRLDNYFVSTQKNRPILFSYPMVLPCAPTTPHSALYKEIWNQV 777

Query: 602 KAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLEN 661
           + + +P+ P    +    C    +E D+     +      + +DW    +       LE 
Sbjct: 778 QRLIIPDPP----NTDEFCRGCPIECDEGT-FGADDPPHYIAIDWEDGFIHLKYQSGLER 832

Query: 662 LLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRL 721
             +  ++  + K   ++P+ L  CL AF + E L  +++WYC +C+  R A K L++W+L
Sbjct: 833 PKD-HESMDIMKNTDSQPIELSECLAAFSKPEELGEDELWYCKKCETHRPARKTLEVWKL 891

Query: 722 PEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKY 758
           P VL+IHLKRF +      K +  V FP+   +   Y
Sbjct: 892 PPVLIIHLKRFHFHNGRWIKSQQRVRFPMSGLDPYAY 928



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 1/61 (1%)

Query: 765  SRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLF 824
            S R +Y+L+A+T H G +G GHYT+  K  + N WY ++DS      ED V S + Y+LF
Sbjct: 1048 SSRPIYDLFAITVHSGILGGGHYTSFAKNPNSN-WYYYNDSSCKETTEDKVSSESPYMLF 1106

Query: 825  Y 825
            Y
Sbjct: 1107 Y 1107



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 46/96 (47%), Gaps = 21/96 (21%)

Query: 37  RPSGIDNSDLVNDATAEDPGA---------GPEIVDTLLEGRDYILLPQEVWNQLHSWY- 86
           +P GI NS L  +     PG+         G  +  +L E  DY LLP++VW  L +WY 
Sbjct: 125 KPIGISNSHLCLEEPF--PGSKKLISLTNEGGVLKPSLKEYVDYYLLPEDVWRALVTWYG 182

Query: 87  ----GGGPTLARKVISSGLSQTELAVEVYPLRLQLL 118
               GGGP L R VI+      E  V +YP  L++ 
Sbjct: 183 TAGLGGGPPLPRPVINE-----EGVVSLYPTLLKVF 213


>gi|334350493|ref|XP_001371319.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 11-like
           [Monodelphis domestica]
          Length = 993

 Score =  215 bits (548), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 178/545 (32%), Positives = 244/545 (44%), Gaps = 140/545 (25%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W+Q W  YV        GD  S            S  P  ++NS+L  D           
Sbjct: 154 WYQQWEAYVR------AGDQDS------------SAFPGPVNNSELFEDQETW------R 189

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L+EG DY+LLP   W+ L +WYG   G P + RKV+   L  T   VEVY + L L
Sbjct: 190 LKERLVEGEDYVLLPAMAWHLLVTWYGLEPGQPPIERKVVE--LPSTH-KVEVYLVELLL 246

Query: 118 LVMPRGECS-TIRISKKETIGELHRRACSIFYLNL-EQICIWDYYGHRKHALMNDMDRTL 175
                 E S   + S+ + +  + + A   F +   E+  +W      K+A         
Sbjct: 247 CQHNDMEISRPAQFSRADPVELVLQTAREQFLVGPEEETRLW-----VKNA--------- 292

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            D + +  +++ + VLD   G                   V++E    + +  G W    
Sbjct: 293 -DGSCERLRNVHMSVLDACLGP---------------GQVVIME----TRNKDGTWP--- 329

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
            +SR H  +       +   D D+  G  GV          GL NLGNTCFMNSA+QCL 
Sbjct: 330 -SSRPHIMK-------SVGDDEDSFRGQPGV---------CGLTNLGNTCFMNSALQCLS 372

Query: 296 HTPEFARYFRED-YRREINWQNPLGMV--------------------------------- 321
           + P    YF  + Y +E+N+ NPLGM                                  
Sbjct: 373 NVPPLTEYFLHNHYLKELNFCNPLGMKGEIAEAYADLVKQAWSGHHRSVVPRMFKTKVGH 432

Query: 322 --------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIA 367
                         ELL+FLLDGLHEDLNRVK K Y++ +DA GRPD+EVADE W NH  
Sbjct: 433 FASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVELRDAAGRPDQEVADEAWRNHKR 492

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL 427
           RNDS+IVD   G +KSTLVCP C KVSVTFDPF YLS+PL  +  R M V   + D    
Sbjct: 493 RNDSVIVDTFHGLFKSTLVCPECGKVSVTFDPFCYLSVPLPVSKERGMEVFFVSMDPRRK 552

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTIK 485
           P  + + VPK G+  DL   L     +   + + VA++ +H   +   L++   SLS I 
Sbjct: 553 PEQHRLVVPKAGKVLDLCVALAKHTGV-SPDRMMVADVFSHRFYKIYQLEE---SLSCIL 608

Query: 486 DDDHL 490
           D D +
Sbjct: 609 DRDDI 613



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 81/190 (42%), Positives = 117/190 (61%), Gaps = 7/190 (3%)

Query: 642 VYVDWSQKLLEKY-NTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
           + +DW   + ++Y N    E  ++    G V +KA   P+ L  C+E F   E L  E+ 
Sbjct: 770 IAIDWEPDMKKRYYNEVEAEGYVKHDCMGYVLRKA---PVRLQECIELFTTVETLEEENP 826

Query: 701 WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
           WYCP CK  + A+KKLDLW LPE L+IHLKRFSY++  + KL+T V FPI D + ++++ 
Sbjct: 827 WYCPTCKRHQLATKKLDLWALPEALIIHLKRFSYTKFSREKLDTLVEFPIRDLDFSEFLI 886

Query: 761 NKNSSRRQL---YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKS 817
              S        Y+L A++NHYGG+  GHYT   +  D  +W+ FDDS +SP++E  ++S
Sbjct: 887 KPRSEADPAPCKYDLIAVSNHYGGLRDGHYTTFARNKDSGQWHYFDDSSVSPVSESQIES 946

Query: 818 AAAYVLFYRR 827
            AAYVLFY+R
Sbjct: 947 KAAYVLFYQR 956


>gi|350596285|ref|XP_001925564.3| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like, partial
           [Sus scrofa]
          Length = 495

 Score =  214 bits (546), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 136/345 (39%), Positives = 175/345 (50%), Gaps = 65/345 (18%)

Query: 201 SSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNT 260
           S+IQD G  +     VLV   K+     G W     T    +S     P+  + ++ D  
Sbjct: 37  STIQDAGLYQ---GQVLVIEQKNE---DGTWPRGPSTPNVKNSNYCL-PSYTAYKNYD-- 87

Query: 261 LGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLG 319
              S         GL GL NLGNTCFMNSAIQCL +TP    YF  D Y+ E+N+ NPLG
Sbjct: 88  --YSEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLG 145

Query: 320 M-----------------------------------------------VELLAFLLDGLH 332
           M                                                ELLAFLLDGLH
Sbjct: 146 MRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLH 205

Query: 333 EDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNK 392
           EDLNR++ KPYI+ KDADGRPD+ VA+E W NH+ RNDSIIVD+  G +KSTLVCP C K
Sbjct: 206 EDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCPECAK 265

Query: 393 VSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNIC 452
           +SVTFDPF YL+LPL     RT+ V +   D    P  Y V VPK G   DL   L  + 
Sbjct: 266 ISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPLTKPMQYKVVVPKIGNILDLCTALSTLS 325

Query: 453 SLKQSEELKVAEIQNHSIQRF--LDDPLISLSTIKDDDHLAAYRV 495
            +  ++++ V +I NH   R   +D+   +LS+I + D +  + +
Sbjct: 326 GVP-ADKMIVTDIYNHRFHRIFAMDE---NLSSIMERDDIYVFEI 366


>gi|281211003|gb|EFA85169.1| peptidase C19 family protein [Polysphondylium pallidum PN500]
          Length = 1138

 Score =  214 bits (545), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 156/504 (30%), Positives = 222/504 (44%), Gaps = 128/504 (25%)

Query: 58  GPEIVDTLL------------EGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTE 105
           GP I DTLL            E +D++++P+  W+     YG    + RKV+ S +S   
Sbjct: 278 GPIINDTLLITDTTHLRLNATEDQDFVVVPESTWDYFLKSYGCPTIIVRKVVKSLIS--- 334

Query: 106 LAVEV-YPLRLQLLVMPRGECSTIRI-----SKKETIGELHRRACSIFYLNLEQICIWDY 159
           L ++  YP  L+            RI      K ETI  +  R C +F +N   + +WDY
Sbjct: 335 LQIDYKYPQCLKFF----KSSQPTRIIEHFVCKSETISSVKDRVCKLFDINPADVRVWDY 390

Query: 160 YGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVE 219
           Y + K+A + + +   +   ++    +L E L++                          
Sbjct: 391 YNNNKYAELKNTEYVSNSKLVENQLILLDERLED-------------------------- 424

Query: 220 PSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLL 279
                    G W   K    NH++   +S               SG    G    +TGL 
Sbjct: 425 ---------GSWPPEK----NHNTYSYSS----------RYNSRSGAPRPG----VTGLD 457

Query: 280 NLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM------------------ 320
           NLGNTCFMNS++QCL +T    RY   D + +++N  NPLG                   
Sbjct: 458 NLGNTCFMNSSLQCLSNTVPLTRYLLNDKHNQDLNRDNPLGCHGDLAIEYAKLIKQLWRG 517

Query: 321 -----------------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADG 351
                                         ELLAFLLDGLHEDLN+VK KP+I+ KD D 
Sbjct: 518 DITSTGPRELKSQIERFAPQFQGYHQHDSQELLAFLLDGLHEDLNKVKKKPFIEGKDYDN 577

Query: 352 RPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATT 411
           RPDE +A E W  H ARNDS+IVD  Q Q KS LVCPVC K+S+TFDPFMYLSLPL    
Sbjct: 578 RPDEVIAKEQWDMHKARNDSVIVDWFQSQLKSRLVCPVCGKISITFDPFMYLSLPLPVNV 637

Query: 412 TRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQ 471
            +   +     D S  PS   V +PK G   +L+ ++    +++   E  VA +Q+ S+ 
Sbjct: 638 RKQFDIVFVPYDSSVAPSPVKVEMPKTGVFEELLDIVSKQVNVE--PERLVATMQSMSVI 695

Query: 472 RFLDDPLISLSTIKDDDHLAAYRV 495
           + +  P   +  I + D +  Y +
Sbjct: 696 QKVYKPTQCVDIIGNRDTIVVYEI 719



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/148 (35%), Positives = 68/148 (45%), Gaps = 44/148 (29%)

Query: 680 LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
           L+L  CLE F   E L P+D WYC  CKE ++A+KK                        
Sbjct: 893 LTLEQCLELFTTVEQLGPDDPWYCSTCKEHQRATKK------------------------ 928

Query: 740 HKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRW 799
                FV  P                   LY+L+A++NHYG +G GHYTA+     EN+W
Sbjct: 929 -----FVLKP---------------GSTPLYDLFAVSNHYGSLGGGHYTAYGLNDLENQW 968

Query: 800 YNFDDSHISPINEDDVKSAAAYVLFYRR 827
             FDDS    ++   + S AAYVLFYRR
Sbjct: 969 IKFDDSSTHNVDPSHIVSDAAYVLFYRR 996


>gi|350424599|ref|XP_003493849.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 31-like [Bombus
           impatiens]
          Length = 928

 Score =  214 bits (545), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 193/693 (27%), Positives = 308/693 (44%), Gaps = 144/693 (20%)

Query: 241 HSSEISTSPNLASARDSDNTLGSSGVTTRGASV-----------GLTGLLNLGNTCFMNS 289
           H S + T  +  S RD    LGSS    R               G+ GL N GNTCFMN+
Sbjct: 128 HMSNVGTQNHKTSHRDD---LGSSAGDIRVPPPRPAHIPPDKVPGVIGLRNHGNTCFMNA 184

Query: 290 AIQCLVHTPEFARYFRED-YRREINWQNPLG---------MVELLA-------------- 325
            +QCL HT   A YF  D Y+ +++ +N L          + E LA              
Sbjct: 185 VLQCLSHTDILAEYFVLDQYKIDLSRRNKLNSKKYGTKGEITEQLALLLKAIWSCQYDPE 244

Query: 326 -----------------------------FLLDGLHEDLNRVKHKPYIKSKDADGRPDEE 356
                                        +LLD +HEDLN+   K Y   K++ GRPD+ 
Sbjct: 245 MSTAFKSVVDKYGSQYRGNLQHDAQEFLLWLLDKVHEDLNQATKKKYKIIKNSFGRPDDI 304

Query: 357 VADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPL-QATTTRTM 415
           VA E  ANH+  N+S +  V Q Q++S+L CP C++ S TFDPF+ +S+P+ Q      +
Sbjct: 305 VAAETLANHVRCNNSFVHAVFQAQFRSSLTCPRCHRQSNTFDPFLCVSVPVPQNHRQMNL 364

Query: 416 TVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLD 475
            V V  +          V+V +    R+L ++L +   + ++  L + EI +    R   
Sbjct: 365 FVNVLYTSQQPRQVKIGVSVNQMANVRELREILASDTGIDENHML-LTEIHDEGFHRTFS 423

Query: 476 DPLISLSTIKDDDHLAAYRVPKLVKKA----VFLQLIHRLQEQEPGAAQTTSQWKAYGTP 531
           D    LS I ++D L    +P+L + A    + L  I+ L + +          + + +P
Sbjct: 424 D-CQPLSVITENDPLYCIELPQLKEPAEQAYILLVWINVLTKGDLR--------QRFSSP 474

Query: 532 LVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSM-VTTVDPSGEAHSNSS 590
               +SR+   S   +Q  + + +   L  + L  + S  P    +   DP       ++
Sbjct: 475 YTMQVSRE--TSYEDLQKLLLKEMHSVLADDVLTSSQS--PGLFNIRVADP-------AA 523

Query: 591 SNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIP---SSSTSIVVYVDWS 647
           + I  E       V  P    Q+     +C D S  G + +++      +T   +  D +
Sbjct: 524 TPIQDEHPCIDPCVEHPLYTEQIEQALALCADDS--GPQHVKLILEWDEATKCNIIQDDN 581

Query: 648 QKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCK 707
            ++ E  +   L+   E+   G VT         L  C + + R E L  ED W+CP C 
Sbjct: 582 DQIEEHASVKQLKTNSEL--GGAVT---------LEECFDLYTRAEILGAEDAWHCPYCN 630

Query: 708 ERRQASKKLDLWRLPEVLVIHLKRF---SYSRSMKHKLETFVNFPIHDFNLTKYVAN--- 761
           ++++  KKL LW LP++LVIHLKRF   S  RS   KL   V+FP++ F++T ++A+   
Sbjct: 631 KKQEVVKKLGLWSLPDILVIHLKRFRQQSKQRSTS-KLTMLVDFPLYGFDMTPHLAHNGV 689

Query: 762 ------------------KNSSRRQ--------LYELYALTNHYG-GMGSGHYTAHIKLL 794
                             K   R+Q        +Y+LYA+ NH+G  +  GHYTA  +  
Sbjct: 690 QTHNNVSSLGGLGWSPWKKPRPRQQNIPKYDENVYDLYAICNHHGQDLQGGHYTAFCRNP 749

Query: 795 DENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            + +WY FDD+ +  +N+ ++ + AAY+LFY+R
Sbjct: 750 YDTQWYCFDDTRVEAVNDTNLITNAAYMLFYQR 782


>gi|213409938|ref|XP_002175739.1| ubiquitin carboxyl-terminal hydrolase [Schizosaccharomyces
           japonicus yFS275]
 gi|212003786|gb|EEB09446.1| ubiquitin carboxyl-terminal hydrolase [Schizosaccharomyces
           japonicus yFS275]
          Length = 970

 Score =  213 bits (543), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 168/560 (30%), Positives = 235/560 (41%), Gaps = 141/560 (25%)

Query: 22  SLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQ 81
           SL EH +  G      P  ID     ND T ED G   ++   L E  D++L+P+ VW  
Sbjct: 87  SLCEHLSEGGPD----PGPIDQ----NDITDEDTG---DLERNLQEESDFVLVPEHVWKI 135

Query: 82  LHSWYG-GGPTLARKVISSGLSQT-ELAVEVYP--LRLQLLVMP---------RGECSTI 128
           L SWYG  G +  R VI+ G   +  L VEVYP   RL LLV+P         R +   +
Sbjct: 136 LISWYGLNGKSYPRNVINQGTEDSSHLIVEVYPPRFRLALLVLPSEDSKKFSAREDIPLV 195

Query: 129 RISKKETIGELHRRACSIFYLNLEQICIWDY-----------------YGHRKHALMNDM 171
             S K +I  L +     F L+ ++  +W                    G R+     D+
Sbjct: 196 TFSSKSSIKNLLKAIKETFNLDTDEFRLWRLESETLSKPTIDPSSFIKLGSRELLNFTDV 255

Query: 172 DRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGW 231
           + +L DA I  D D+++E                                    ++ G W
Sbjct: 256 NISLIDAEIDSDTDLVIEC-----------------------------------TVHGNW 280

Query: 232 SASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAI 291
                   +H+  +      AS        G +    +   +GL GL NLGNTC+MNSA+
Sbjct: 281 PV------DHALRVQYMVQRASKNG-----GQADAEAKSKKMGLCGLANLGNTCYMNSAL 329

Query: 292 QCLVHTPEFARYFR-EDYRREINWQNPLGM------------------------------ 320
           QCL HTPE   +F+ +D++ ++N  NPLG                               
Sbjct: 330 QCLSHTPELVDFFQNQDWKEQVNETNPLGTGGQIASVYADLIKALYSSEAKDFFSPRHFK 389

Query: 321 ------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDA---DGRPDEEVAD 359
                              E LAFLLDGLHEDLNR++ KPY +  D    D +   + A+
Sbjct: 390 AVVGRLNHSFIGYQQQDSQEFLAFLLDGLHEDLNRIQQKPYTEKPDLFENDPQKIIDTAN 449

Query: 360 EYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTV 419
           E W  H  RNDS+IVD  QG YKSTLVCP CNKVS+TFDPFM L+LPL  +   T TV  
Sbjct: 450 ECWKLHKMRNDSVIVDTFQGMYKSTLVCPECNKVSITFDPFMDLTLPLPVSQNWTHTVLY 509

Query: 420 FTSDGSALPSTYTVTVPKHGRCRDLIQ-VLGNICSLKQSEELKVAEIQNHSIQRFLDDPL 478
              D +  P +  V         D ++  +      + +  L VAE       R+  +  
Sbjct: 510 VPKDITRKPVSVEVVFENKSATIDTLRNFVAEKVGCEDAAALLVAETYRGRFYRYFTNVK 569

Query: 479 IS-LSTIKDDDHLAAYRVPK 497
            S +  I +DD +  Y + +
Sbjct: 570 SSVMMDISEDDEIYIYELDR 589



 Score =  152 bits (384), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 72/159 (45%), Positives = 102/159 (64%), Gaps = 4/159 (2%)

Query: 673 KKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF 732
           K    + +SL  CL  F + E L  ED WYCP CKE R A K+++LW  P+VL+ HLKRF
Sbjct: 803 KPEEKKDISLDDCLNEFEKTEQLSEEDPWYCPNCKEFRCAYKQMELWFAPDVLIFHLKRF 862

Query: 733 SYSRSMKHKLETFVNFPIHDFNLTKYV-ANKNSSRRQ---LYELYALTNHYGGMGSGHYT 788
           S  R  + K++  +NFPI   +LT  + +NK  ++     +Y+L+A+ NHYG +G GHYT
Sbjct: 863 SSERRFRDKIDVLINFPIKSLDLTNRIGSNKQQNKPNETIVYDLFAVDNHYGSLGGGHYT 922

Query: 789 AHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           A+     + R+Y FDDS +SP  +++V S AAY+LFYRR
Sbjct: 923 AYAINSTDQRFYCFDDSRVSPATDEEVVSPAAYLLFYRR 961


>gi|339236929|ref|XP_003380019.1| ubiquitin carboxyl- hydrolase 4 [Trichinella spiralis]
 gi|316977237|gb|EFV60365.1| ubiquitin carboxyl- hydrolase 4 [Trichinella spiralis]
          Length = 802

 Score =  213 bits (541), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 175/573 (30%), Positives = 259/573 (45%), Gaps = 115/573 (20%)

Query: 28  NSAGSSASKRPSGIDNSDLVNDATAEDPGAGPEIV-DTLLEGRDYILLPQEVWNQLHSWY 86
           +S  SS +K P  IDNS ++       P +  + + D L E  D+ ++P + W++L   Y
Sbjct: 54  DSVSSSTTKPPGPIDNSRILE----VRPNSNEQTLKDGLRENEDFYIIPTDAWDKLVEKY 109

Query: 87  G---GGPTLARKVISSGLS-QTELA-VEVYPLRLQLLVM-PRGECSTIRISKKETIGELH 140
           G   G   +ARKVIS   S +TE   VEVYPL L +     R     + +S   T  +L 
Sbjct: 110 GLVSGQKPIARKVISRYSSNKTEYRYVEVYPLELTVYKHNDRSNIKQLTLSIASTFDDLI 169

Query: 141 RRACSIFYLNLEQICIWDYYGHRKHALMNDMDRT--LDDANIQMDQDILVEVLDNVNGTN 198
           R   S F L+LE   ++         L+N  D +  L + ++   Q I+++  ++     
Sbjct: 170 RAVNSAFDLDLENFRLYVKLEGDLFELINPKDTSTFLYELDLSPKQTIVIDTQED----- 224

Query: 199 CKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSD 258
                                         G WS +  +S       S+SP+L +A+   
Sbjct: 225 ------------------------------GKWSMANVSSSKQVVTGSSSPSLPAAQH-- 252

Query: 259 NTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNP 317
                       A+ GL GL NLGNTCFMNS IQCL + P  +RYF  E Y  E+N +NP
Sbjct: 253 ---------ISLATPGLCGLTNLGNTCFMNSTIQCLSNIPPLSRYFLSEQYIDELNEKNP 303

Query: 318 LGM-----------------------------------------------VELLAFLLDG 330
           LGM                                                EL+AFLLDG
Sbjct: 304 LGMRGELARAYADVICNMWSGRHYTYMPRMFKNTVGRFQPMFSGYQQQDSQELMAFLLDG 363

Query: 331 LHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVC 390
           LHEDLNR+K KPY+ +KD++ RPDEE+A E W ++  RNDSII+D+  G  KST+VCP C
Sbjct: 364 LHEDLNRIKKKPYVVAKDSEDRPDEELATEAWRSYKLRNDSIILDLFHGLLKSTVVCPEC 423

Query: 391 NKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGN 450
           +KVS+TFDPF YLSLPL   + R + +     D     S + V V K      + ++L +
Sbjct: 424 DKVSITFDPFCYLSLPLPEKSDRLLVINFVPLDADIPISQHVVGVNKTQTFMHVSEMLSS 483

Query: 451 ICSLKQSEELKVAEIQNHSIQRFL--DDPLISLSTIKD--DDHLAAYRV-PKLVKKAVFL 505
           +  +  S  L  AE+ +  + + +  +D L   +   D   + + AY   P+   + +  
Sbjct: 484 MVKVP-SNRLIFAEVNDTMMIQLINVNDTLYKFTLRGDRLSNKIVAYETRPESKDEPMVT 542

Query: 506 QLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISR 538
             I + + + PG       W   G P +  + R
Sbjct: 543 VCIFQKRLKSPG--NPDGDWVLIGMPHLIRVPR 573



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 45/93 (48%), Positives = 67/93 (72%), Gaps = 1/93 (1%)

Query: 735 SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
           SRS ++K++T V+FPI + +++K+   K+     LY+L +++NHYGG+GSGHYTA  K  
Sbjct: 690 SRSFRNKIDTLVSFPITNLDMSKWCIAKDC-EPALYDLVSISNHYGGLGSGHYTAFAKNC 748

Query: 795 DENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           D  RWYNFDD H+S ++E+D+ +  AYVL Y R
Sbjct: 749 DTKRWYNFDDMHVSVVSEEDIVTKEAYVLIYLR 781


>gi|299473323|emb|CBN77722.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1943

 Score =  212 bits (539), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 144/439 (32%), Positives = 210/439 (47%), Gaps = 74/439 (16%)

Query: 28   NSAGSSASKRPSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYG 87
            +S  +  + RP  I N  L+        G    IV     G D+ ++P + W+ L SWY 
Sbjct: 727  SSFATQQTPRPGQIHNGALLEH------GGSRRIVRAARLGPDFAIIPPKAWDALQSWYE 780

Query: 88   GGPTLARKVIS-SGLSQTELAVEVYPLRLQLLVM-----------PRGECSTIRISKKET 135
            GGP L R+VI   G  Q EL    +PL L+L              PR     +  SK + 
Sbjct: 781  GGPVLERRVIDYHGTPQLEL----FPLSLKLQYRHQVASCDVKGKPRQFEREMLFSKVDK 836

Query: 136  IGELHRRACSIFYLNLEQICIWDYYGH----RKHALMNDMDRTLDDANIQMDQDILVEVL 191
            + ++ ++      +  E+  +W+Y       ++H L      TL++A +   Q +L+E+ 
Sbjct: 837  VSDVVKQLSEANKVEPERSRLWNYADRVDWKKQHVLTPG--HTLEEAKLLDGQLVLLEI- 893

Query: 192  DNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNL 251
                      S QD                       G W  S+  S   + E       
Sbjct: 894  ----------SQQD-----------------------GAWPRSQLQSTFEAEEEEAQAGT 920

Query: 252  A-SARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YR 309
            A S  +    +G           G+ GL NLGNTC++NS++QCL HTP    YF    Y 
Sbjct: 921  AVSGHNKAGVIGD----------GMVGLGNLGNTCYINSSVQCLSHTPLLTEYFLSSAYV 970

Query: 310  REINWQNPLGMVELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARN 369
             ++N  N LG+ ELLAFLL+GL+EDLNR+  KPYI+  D+DGR D E+AD +W NH+ R 
Sbjct: 971  NDVNVDNKLGLQELLAFLLNGLNEDLNRIADKPYIEQPDSDGRSDAELADIWWKNHLRRE 1030

Query: 370  DSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPS 429
             SI+V +  GQ+KS L C  C   S  F+PFM+L LPL   T R++ V V   DG+  P+
Sbjct: 1031 FSIVVALFAGQFKSVLACRECGYESARFEPFMFLQLPLPENTERSVMVIVVLLDGARCPA 1090

Query: 430  TYTVTVPKHGRCRDLIQVL 448
              ++ +PK GR  DL++ +
Sbjct: 1091 KCSLRLPKSGRVSDLVRAI 1109



 Score = 84.3 bits (207), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 76/148 (51%), Gaps = 18/148 (12%)

Query: 642  VYVDWSQKLLEKY--NTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPED 699
            V VDW   +++++   +  L  LL    +  + K     PLSL  CL+ F  +E +    
Sbjct: 1557 VGVDWHISVIKEHYDASEALSCLLH--SSIALHKDLEARPLSLEKCLDTFTAQEDI---K 1611

Query: 700  MWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYV 759
              YC +CKE R ASKK+D+WRLP +L I LKRF Y++  + KL   V+FP++  +L+ YV
Sbjct: 1612 EGYCSRCKEFRNASKKMDVWRLPPILAIQLKRFQYTQYSRRKLRNNVHFPVNGLDLSPYV 1671

Query: 760  ANKNSSRRQLYELYALTNHYGGMGSGHY 787
                +S              GG  S H+
Sbjct: 1672 VKDPAS-----------GATGGSASAHF 1688



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 42/61 (68%), Gaps = 2/61 (3%)

Query: 769  LYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDV--KSAAAYVLFYR 826
            LY+LY++ +H G + SGHY A +K     +W+ F+D  ++ ++ED++   S++AY+LFY 
Sbjct: 1845 LYDLYSVVHHLGALSSGHYVASVKSQPTGKWHYFNDDQVTEVDEDELGSSSSSAYILFYM 1904

Query: 827  R 827
            R
Sbjct: 1905 R 1905


>gi|224139982|ref|XP_002323369.1| predicted protein [Populus trichocarpa]
 gi|222867999|gb|EEF05130.1| predicted protein [Populus trichocarpa]
          Length = 433

 Score =  211 bits (538), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 143/394 (36%), Positives = 201/394 (51%), Gaps = 29/394 (7%)

Query: 273 VGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDYRREINWQNPLGMVELLAFLLDGLH 332
           +G  G  NLGNTCFMNSAIQCL H+P+    F  DYR+EIN +NP+G    LA     L 
Sbjct: 12  LGEHGKENLGNTCFMNSAIQCLAHSPKLVDCFLGDYRKEINQENPIGTKGELALAFGDLL 71

Query: 333 EDL---NRVKHKPYI-KSKDADGRPDEEVADEYWANHIARN--DSIIVDVCQGQYKSTLV 386
             L    R    P I K K AD  P            I  N  DS      QGQY+STLV
Sbjct: 72  SKLWTPGRTPVAPAIFKRKLADFSP----------QFIGYNQHDS------QGQYQSTLV 115

Query: 387 CPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQ 446
           CP CNK SVT+DPFMYLSLPL +TT RTMT+T+ ++DG  LPS  TVTVPK GR +DLI 
Sbjct: 116 CPACNKKSVTYDPFMYLSLPLPSTTMRTMTLTILSTDGRNLPSPITVTVPKCGRLKDLIG 175

Query: 447 VLGNICSLKQSEE-LKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFL 505
            L   CS +  +E L V EI  + I R    P  S++ I+D+D L AYR+PK  + ++ +
Sbjct: 176 ALSIACSSRDIDEMLMVVEIYKNKIFRPTTKPSDSVALIRDEDKLVAYRLPKDNQNSLLV 235

Query: 506 QLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLM 565
             +H   E+     +     K +G P V+ +  +D+ +   +     ++ SP L      
Sbjct: 236 VFMHERVERPCEFERAIPNLKLFGIPFVARL--EDLSTGFDLHKLYLKLHSPLLMPAE-D 292

Query: 566 HADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSV 625
             D +D   + T+ D + E   + +     +  +     +  +    L D         +
Sbjct: 293 ACDDYDDVGITTSEDSTMENVLSPTIYTGLDTGTEDDQCSSSDFRFYLKDGLR---STEM 349

Query: 626 EGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFL 659
           + +  + +P  +  + VYV WS+  +EKY+T  L
Sbjct: 350 KMNDPLPVPKFNDDLEVYVTWSENTIEKYDTCLL 383



 Score = 52.8 bits (125), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 29/43 (67%)

Query: 747 NFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTA 789
           +FPI DF L+ Y++ K+S     Y LYA +NH+ GMG GHY A
Sbjct: 387 DFPIDDFELSTYISQKDSQFSNHYVLYATSNHHEGMGCGHYDA 429


>gi|66800105|ref|XP_628978.1| peptidase C19 family protein [Dictyostelium discoideum AX4]
 gi|60462340|gb|EAL60562.1| peptidase C19 family protein [Dictyostelium discoideum AX4]
          Length = 1085

 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 154/467 (32%), Positives = 213/467 (45%), Gaps = 118/467 (25%)

Query: 35  SKRPSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLAR 94
           SK    I++ + +   T +D     E+   + E   + L+P++ W +L   YGGGP + R
Sbjct: 155 SKWSEEINSREELGPITNDDILQNGELRPGISETTSFTLVPEKTWIKLKEVYGGGPEIIR 214

Query: 95  KVISSGLSQT-ELAVEVYPLRLQLLVMPRGECSTIRIS---KKETIGELHRRACSIFYLN 150
           KVI   ++   +L +   P+ L+       + S I      K ETI  +  RAC +F L+
Sbjct: 215 KVIRGTINNNIDLRI---PISLKFF--KSSDTSNIVQGFAFKNETIKVMKERACKVFNLD 269

Query: 151 LEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAE 210
              I IWD+Y   KHA + D++  + ++ +  DQ IL+E                    E
Sbjct: 270 PINIRIWDFYNQTKHAELKDLEY-VSNSRLLEDQLILLE--------------------E 308

Query: 211 KKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRG 270
           K A+              G W                 P   S R       SSG T  G
Sbjct: 309 KLAN--------------GKW-----------------PQQQSDR------YSSGNTRCG 331

Query: 271 -ASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGM-------- 320
               G+TGL NLGNTCFMNSA+QCL +T    +YF  + Y  +IN  NPLG         
Sbjct: 332 DPRPGITGLGNLGNTCFMNSALQCLSNTYPLTKYFLSKQYENDINKTNPLGCHGDLATDY 391

Query: 321 ---------------------------------------VELLAFLLDGLHEDLNRVKHK 341
                                                   ELLAFLLDGLHEDLN+VK K
Sbjct: 392 AELITEIWEGTYSSVYPRKFKGQIERFAPQFAGYHQHDSQELLAFLLDGLHEDLNKVKKK 451

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
           P+ + KD DGRPD+ +A E W  H +RN+S+IVD  Q Q KS LVCPVC  +S+TFDPFM
Sbjct: 452 PFHEGKDYDGRPDDVIAKEQWEMHKSRNNSVIVDWFQSQLKSKLVCPVCQNISITFDPFM 511

Query: 402 YLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVL 448
           YLSLPL + T +    +    D     + + ++V  +    DL++ L
Sbjct: 512 YLSLPLPSETIKQFNFSFLNKDFKI--TQHEISVSSNATVGDLLKKL 556



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/148 (51%), Positives = 104/148 (70%), Gaps = 1/148 (0%)

Query: 680 LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
           ++L  C++ F  EE L PED WYC +CKE ++A+KK D+W  P +LV+HLKRFSY RS +
Sbjct: 833 VNLEQCIKLFTTEEQLGPEDPWYCSKCKEHQRATKKFDIWSSPPILVVHLKRFSYKRSHR 892

Query: 740 HKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRW 799
            KL+T V FP  D +L++YV NK+     +Y+L+A++NHYG +G GHYTA      E+ W
Sbjct: 893 DKLDTLVKFPFKDLDLSQYVLNKDQP-APIYDLFAVSNHYGSLGGGHYTAFALNEPEDTW 951

Query: 800 YNFDDSHISPINEDDVKSAAAYVLFYRR 827
           + FDDSH S  N + ++S AAYVLFYRR
Sbjct: 952 FKFDDSHASEANINSIESDAAYVLFYRR 979


>gi|395536958|ref|XP_003770475.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 43 [Sarcophilus
           harrisii]
          Length = 1139

 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 171/651 (26%), Positives = 283/651 (43%), Gaps = 139/651 (21%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDYRR----------------------- 310
           G  GL N GNTCFMN+ +QCL +T   A +    + R                       
Sbjct: 101 GTQGLKNHGNTCFMNAVVQCLSNTDLLAEFLALGHYRARPGRAEVTEQLAGLVRALWTRD 160

Query: 311 -----EINWQNPLG-------------MVELLAFLLDGLHEDLNRVKHKPYIKSKDADGR 352
                 + ++N +               +E L +LLD +HEDL+            + G+
Sbjct: 161 YTPHLSVEFKNTVSKYGSQFQGNLQHDALEFLLWLLDRVHEDLD----------SSSPGQ 210

Query: 353 PDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTT 412
             E+       N  ++  S + +  Q QY+S+L CP C K S TFDPF+ +SLP+ +  T
Sbjct: 211 SSEKSQPGPSKNCPSQRQSFVQNHFQAQYRSSLTCPHCQKQSNTFDPFLCVSLPIPSCQT 270

Query: 413 RTMTVTV--------FTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAE 464
           R++ VT+        F   G A+P   TV        R ++     I +     E+ + E
Sbjct: 271 RSLNVTLVFQSKNQRFLRIGLAVPLFSTVAT-----LRKMVAEESKITA----NEVVLVE 321

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV---PKLVKKAVFLQL-------IHRLQE 513
           +  +  QR F D+    L+TI ++D++ A++    P     A F           H+ Q 
Sbjct: 322 LSPNGFQRSFFDEE--DLNTISEEDNVYAFQASWSPIWGVPATFSDCSSSVHITKHKGQS 379

Query: 514 QEPGAAQTTSQWKA-YGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDP 572
                A +T  W +  G+ ++  I   +++ SG      +R   P L +E          
Sbjct: 380 LPQMGALSTESWSSGNGSKVI--ILLCNLVGSGH---KAKRFGPPLLLRED--------- 425

Query: 573 SSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVC-----------F 621
                + D   +   N    + K++       +L    +++V  SN+C           F
Sbjct: 426 --RAISWDQLRQQVFNKMRYLIKQEVPMQSLGSL--FAVRVVGLSNICSYLSPQDSRPLF 481

Query: 622 DLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGP----VTKKART 677
             +VE    +  P S   I + V+W + + +    +  E   EV ++ P      +  + 
Sbjct: 482 HWAVERSLKLSKPGSPPHIKLAVEWDRNIKQLLFGNIQE---EVVRDAPSVQLQQQAHQQ 538

Query: 678 EPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRS 737
              +L  C + + +EE L P+D W CP CK  +Q   KL LW LP++L+IHLKRF     
Sbjct: 539 PSCTLNECFQLYTKEEQLAPDDAWKCPHCKVLQQGMVKLSLWTLPDILIIHLKRFCQVGG 598

Query: 738 MKHKLETFVNFPIHDFNLTKYVANKNSSRRQ---------------------LYELYALT 776
            ++KL T V FP++  N+  +VA +N  +                       LY+LYA+ 
Sbjct: 599 RRNKLSTLVKFPLYGLNMAPHVAKRNFGQECLNSWPSWEQASCLPNSCSFDFLYDLYAVC 658

Query: 777 NHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           NH+G M  GHYTA+ +   + +WY++DDS + P+ ED++ +  AY+LFY++
Sbjct: 659 NHHGSMQGGHYTAYCRNSLDGQWYSYDDSTVEPVLEDEISTQGAYILFYQK 709


>gi|166240137|ref|XP_001733062.1| peptidase C19 family protein [Dictyostelium discoideum AX4]
 gi|165988448|gb|EDR41009.1| peptidase C19 family protein [Dictyostelium discoideum AX4]
          Length = 1021

 Score =  209 bits (533), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 154/466 (33%), Positives = 212/466 (45%), Gaps = 116/466 (24%)

Query: 35  SKRPSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLAR 94
           SK    I++ + +   T +D     E+   + E   + L+P++ W +L   YGGGP + R
Sbjct: 91  SKWSEEINSREELGPITNDDILQNGELRPGISETTSFTLVPEKTWIKLKEVYGGGPEIIR 150

Query: 95  KVISSGLSQTELAVEVYPLRLQLLVMPRGECSTIRIS---KKETIGELHRRACSIFYLNL 151
           KVI  G     + + + P+ L+       + S I      K ETI  +  RAC +F L+ 
Sbjct: 151 KVIR-GTINNNIDLRI-PISLKFF--KSSDTSNIVQGFAFKNETIKVMKERACKVFNLDP 206

Query: 152 EQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEK 211
             I IWD+Y   KHA + D++  + ++ +  DQ IL+E                    EK
Sbjct: 207 INIRIWDFYNQTKHAELKDLEY-VSNSRLLEDQLILLE--------------------EK 245

Query: 212 KASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRG- 270
            A+              G W                 P   S R       SSG T  G 
Sbjct: 246 LAN--------------GKW-----------------PQQQSDR------YSSGNTRCGD 268

Query: 271 ASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGM--------- 320
              G+TGL NLGNTCFMNSA+QCL +T    +YF  + Y  +IN  NPLG          
Sbjct: 269 PRPGITGLGNLGNTCFMNSALQCLSNTYPLTKYFLSKQYENDINKTNPLGCHGDLATDYA 328

Query: 321 --------------------------------------VELLAFLLDGLHEDLNRVKHKP 342
                                                  ELLAFLLDGLHEDLN+VK KP
Sbjct: 329 ELITEIWEGTYSSVYPRKFKGQIERFAPQFAGYHQHDSQELLAFLLDGLHEDLNKVKKKP 388

Query: 343 YIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMY 402
           + + KD DGRPD+ +A E W  H +RN+S+IVD  Q Q KS LVCPVC  +S+TFDPFMY
Sbjct: 389 FHEGKDYDGRPDDVIAKEQWEMHKSRNNSVIVDWFQSQLKSKLVCPVCQNISITFDPFMY 448

Query: 403 LSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVL 448
           LSLPL + T +    +    D     + + ++V  +    DL++ L
Sbjct: 449 LSLPLPSETIKQFNFSFLNKDFKI--TQHEISVSSNATVGDLLKKL 492



 Score =  170 bits (430), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 76/148 (51%), Positives = 104/148 (70%), Gaps = 1/148 (0%)

Query: 680 LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
           ++L  C++ F  EE L PED WYC +CKE ++A+KK D+W  P +LV+HLKRFSY RS +
Sbjct: 769 VNLEQCIKLFTTEEQLGPEDPWYCSKCKEHQRATKKFDIWSSPPILVVHLKRFSYKRSHR 828

Query: 740 HKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRW 799
            KL+T V FP  D +L++YV NK+     +Y+L+A++NHYG +G GHYTA      E+ W
Sbjct: 829 DKLDTLVKFPFKDLDLSQYVLNKDQP-APIYDLFAVSNHYGSLGGGHYTAFALNEPEDTW 887

Query: 800 YNFDDSHISPINEDDVKSAAAYVLFYRR 827
           + FDDSH S  N + ++S AAYVLFYRR
Sbjct: 888 FKFDDSHASEANINSIESDAAYVLFYRR 915


>gi|393222219|gb|EJD07703.1| UCH-domain-containing protein [Fomitiporia mediterranea MF3/22]
          Length = 1210

 Score =  208 bits (529), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 161/539 (29%), Positives = 243/539 (45%), Gaps = 104/539 (19%)

Query: 41  IDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGP-TLARKVISS 99
           +DNS    D   +          +++EG D+  +P E WN    WYG  P  +AR+V++ 
Sbjct: 94  VDNSKFFEDGKFD-------ASQSMMEGIDFEFVPSEAWNAFVQWYGETPDVIARQVVTR 146

Query: 100 GLSQTELAVEVYPLRLQLLVMPRGECSTIRISKKE-TIGELHR----------------- 141
           G    E  +E+ PL + +  +     S+     +E TI  L +                 
Sbjct: 147 G-QNNEPCIELRPLCVPVSRLVSDTTSSSHNPPRELTISSLAKLSDLYTKLLDILDLPRQ 205

Query: 142 ---RACSIFYLNLEQICIWDYYGHRKHALM--NDMD---RTLDDANIQMDQDILVEVLDN 193
              R  ++F L L ++ +      + +AL+  ND D   +T+++A ++     +VE+L++
Sbjct: 206 TQFRTWAVFNLTLNEVFVTLPNFLKGNALLLPNDEDHISQTIEEAIVEQCDGFVVELLED 265

Query: 194 VNGTNCKSSIQDNGF-----AEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTS 248
                 +  ++  G      AE  A S    P   S   +G    + GT+   S  ISTS
Sbjct: 266 GRWLVDEVKVRQPGAVTPNPAEDTAPSFSSGPDFFSKFESGSSKKAGGTALGPSPPISTS 325

Query: 249 PNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-RED 307
                      + G      +G   G  G  N+GNTCFMNSA+QCLVHT E   YF    
Sbjct: 326 -----------SYGKGRADRKGIVPGTIGFSNMGNTCFMNSALQCLVHTQELVEYFLTRV 374

Query: 308 YRREINWQNPLGMV---------------------------------------------- 321
           Y+ E+N  NPLGM                                               
Sbjct: 375 YQGELNPDNPLGMQGAIAEAFGVVMDRVWLPQSTVYAPREFKMQLQRFAPQFSGYQQHDS 434

Query: 322 -ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEV---ADEYWANHIARNDSIIVDVC 377
            EL+AFLLDGLHEDLNRV  KPY++  D +G  D+E+   A E W  +  RNDS+IVD+ 
Sbjct: 435 QELVAFLLDGLHEDLNRVLKKPYVEKPDWNGGGDKELVALAKESWEGYKKRNDSVIVDLF 494

Query: 378 QGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPK 437
           QGQY+STLVCP C +VS+TFDPFMYL+LPL      T  +     D S       V + +
Sbjct: 495 QGQYRSTLVCPECKRVSITFDPFMYLTLPLPVQKKWTHPILYIPWDVSKPHVKVPVELNR 554

Query: 438 HGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVP 496
           +   R++ Q+L    +  + + L   E  ++   ++LDD  + +  + D DH+  + +P
Sbjct: 555 NASFREVRQLLSRWMN-AEPDNLLTLETFSNRFYKYLDD-TVPVGDMSDADHIVCFELP 611



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 73/193 (37%), Positives = 116/193 (60%), Gaps = 20/193 (10%)

Query: 655  NTHFLENLLEVFKNGPVTKKARTEP-LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQAS 713
            + H+ E +   FK       AR++  ++L  CL+ F REE L  ED+WYC +CK+ + A+
Sbjct: 838  DRHWGEFIHPEFKEMQEASAARSKKCITLNDCLDEFTREEELGEEDLWYCSKCKKHQPAT 897

Query: 714  KKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRR------ 767
            KK DLW +P++LV+HLKRFS SR ++ K++ FV+FP+   +L  +   +  ++R      
Sbjct: 898  KKFDLWTIPDILVVHLKRFSNSRILRDKIDAFVDFPVEGLDLEAFSGEREVAKRLAQEGH 957

Query: 768  -------------QLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDD 814
                          LY+LYA+  H GG+G GHY A+ K  + ++WY+FDD+H+S  +  D
Sbjct: 958  DVKALGVSDAEEPLLYDLYAVDEHMGGLGGGHYRAYAKNHETDKWYHFDDTHVSVADPAD 1017

Query: 815  VKSAAAYVLFYRR 827
              + +AY+LFY+R
Sbjct: 1018 AVNRSAYLLFYKR 1030


>gi|443898438|dbj|GAC75773.1| ubiquitin C-terminal hydrolase [Pseudozyma antarctica T-34]
          Length = 1407

 Score =  207 bits (528), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 180/579 (31%), Positives = 257/579 (44%), Gaps = 142/579 (24%)

Query: 25  EHFNSAGSSASKRPSG-IDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLH 83
           EH ++  S  +  P G IDN+DL++   +E P    ++   + E  DY +LP++ W  L 
Sbjct: 260 EHRDADPSEKADPPVGPIDNADLLD---SEAPTGFAQLRQHINEHTDYEMLPEQGWKLLV 316

Query: 84  SWYG-GGPTLARKVISSGLSQTELAVEVYPLRLQLL----------VMP--------RGE 124
           +WYG  GP  AR  I  GLS  + +VE YP  ++LL          V P          E
Sbjct: 317 AWYGCTGPAFARNAIE-GLSPGQESVEFYPPIIRLLRVVQDDTRNDVNPAPLFSLSVSTE 375

Query: 125 CSTIRISKKETI--------------------GELHRRACSIFYLNLEQICIWDYYGHRK 164
            S ++   K T                      EL     +I  + L+ + + D    R 
Sbjct: 376 LSELKAKAKATFDLGDLADADLRFYHFPEPEDSELQSGRVTISRIELDGVDLIDANEDRP 435

Query: 165 HALMNDMDRTLDDANI-QMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKAS--------- 214
               +D+  TL    I +++ +++VE       T      Q +G AE+  S         
Sbjct: 436 DTYRSDI--TLKSIGIDEIEVNLVVE-------TRKSGRWQSDGPAEEAPSVKGIFAQQS 486

Query: 215 ----SVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRG 270
               S L +PS SS S+    +A     R   S+ +T          D T+G S      
Sbjct: 487 GDFFSNLQQPSASSTSVTAAGAAPDALGRVTRSQTAT----------DRTMGRS------ 530

Query: 271 ASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM--------- 320
              GL GL NLGNTCFMNSA+QCL +T E  +YF    YR E+N  NPLGM         
Sbjct: 531 --RGLRGLNNLGNTCFMNSALQCLSNTYELQQYFVSGAYRDELNTDNPLGMGGAIAEAFG 588

Query: 321 --------------------------------------VELLAFLLDGLHEDLNRVKHKP 342
                                                  ELLAFLLDGLHEDLNR+  KP
Sbjct: 589 NLISNIWNGQGGSFWPREFKFALSRFAPQFSGYAQHDSQELLAFLLDGLHEDLNRILKKP 648

Query: 343 YIKSKDADGRPDEEV---ADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDP 399
           YI++ D DG  ++ +   A   W  + ARNDS+IVD+ QGQY+STLVCP C+K+S+ FDP
Sbjct: 649 YIEAPDWDGGDEKALVAFAKRQWDIYKARNDSVIVDLFQGQYRSTLVCPECSKISIKFDP 708

Query: 400 FMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEE 459
           FMYL+LP+         V     + +     + V +P       L Q +     + ++ +
Sbjct: 709 FMYLTLPIPNKKVWRAQVYFVPLEPTKPMQKFHVQLPAGSTVSKLRQKVAAQFGV-ETRQ 767

Query: 460 LKVAEIQNHSIQRFLDD--PLISLSTIKDDDHLAAYRVP 496
           L   E+ +H I +++DD  PL+    IKD D +  + VP
Sbjct: 768 LICGEVWHHRIYKWIDDYEPLVD---IKDGDFVYFWEVP 803



 Score =  163 bits (412), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 85/218 (38%), Positives = 117/218 (53%), Gaps = 41/218 (18%)

Query: 647  SQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQC 706
            S +L  +Y     E + E    GP    +R + LS+  C++ F +EE L  +D WYCP C
Sbjct: 1091 SGQLWGEYEQVVDEAIRERDSAGP----SRPKSLSIEDCMDEFTKEEQLGEDDPWYCPSC 1146

Query: 707  KERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSR 766
            KE RQA+KK DLW+ P++LV+HLKRFS  R  + KL   V+FP+   +LT  V    + R
Sbjct: 1147 KEFRQATKKFDLWKAPDILVVHLKRFSAGRHSRDKLNMLVDFPLEGLDLTDRVEGTQALR 1206

Query: 767  R------------------------------------QLYELYALTNHYGGMGSGHYTAH 790
            R                                     +Y+LYA+ NH+GG+G GHYTA 
Sbjct: 1207 RVQEEAKQSGEELSESMLGSGILRPLEDNDDAVAVDKPIYDLYAVDNHFGGLGGGHYTAF 1266

Query: 791  IKLLDENRWYNFDDSHISPI-NEDDVKSAAAYVLFYRR 827
             K   + +WY FDDS + P+ N + VKSA+AY+LFYRR
Sbjct: 1267 AKSPADGKWYEFDDSSVRPVANPESVKSASAYLLFYRR 1304


>gi|290996750|ref|XP_002680945.1| ubiquitin specific hydrolase [Naegleria gruberi]
 gi|284094567|gb|EFC48201.1| ubiquitin specific hydrolase [Naegleria gruberi]
          Length = 966

 Score =  207 bits (527), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 164/541 (30%), Positives = 237/541 (43%), Gaps = 121/541 (22%)

Query: 33  SASKRPSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTL 92
           +A   P  IDN+ LV++ +         + D + E +DY ++P+ +WN  HSW+GGGP +
Sbjct: 91  AAKISPGTIDNTHLVDETS----DGIYRVKDEVQEQQDYEIIPEHIWNLFHSWFGGGPAI 146

Query: 93  ARKVISSGLSQTELA--VEVYPLRLQLLVMPRG---ECSTIRISKKETIGELHRRACSIF 147
            RK +        ++  VEV P  + + +       +      SK  TI ++  +    F
Sbjct: 147 PRKSVIQNPEAYRISYTVEVRPCEISVALQTTSNQLDWVDFEFSKNATIKQVMDQVKREF 206

Query: 148 YLNLEQICIWDYYGHRKHA---LMNDMDRTLDDA-NIQMDQDILVEVLDNVNGTNCKSSI 203
            +   +  +W    +  H    L    D+TL++A   +  Q  +VEV     G N     
Sbjct: 207 NIQSRECKLWKTIYNSPHEEVDLSVVEDQTLENALERKTGQRFIVEV-----GPNW---- 257

Query: 204 QDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGS 263
                        ++EP      +A  ++A +  + N      T+       DS      
Sbjct: 258 -------------IIEPP-----VAESYNAIRSMTNNKVQISGTTAQQKKRYDS------ 293

Query: 264 SGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLGM-- 320
                  A  G+ GL NLGNTCFMNS +QCL H+P   RYF E DY +EIN  NPLGM  
Sbjct: 294 -------APPGVCGLSNLGNTCFMNSGLQCLTHSPVLYRYFLENDYSKEINETNPLGMGG 346

Query: 321 ---------------------------------------------VELLAFLLDGLHEDL 335
                                                         EL++F+LDGLHEDL
Sbjct: 347 AVALAFGALMKEMWSGENSYFSPNDFKRVIGKYAPQFAGYQQQDSQELISFILDGLHEDL 406

Query: 336 NRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSV 395
           NR++ KP     +A GR D  VA E W  H  RNDSIIVD  QGQ KSTL CP C+  S+
Sbjct: 407 NRIQKKPATNPVEAKGREDSVVAQESWDVHKLRNDSIIVDKFQGQLKSTLHCPKCDNFSI 466

Query: 396 TFDPFMYLSLPLQATTTRTMTVTVFT----------------SDGSALPSTYTVTVPKHG 439
            FDPFMYLSLP+     R + V VF+                S  S +P+  T  V K G
Sbjct: 467 IFDPFMYLSLPIPIEKNRLINVMVFSNSTFPNEVESTLDSDLSKLSNMPTRLTCKVSKTG 526

Query: 440 ---RCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVP 496
              + RD +  L  + + +  +   + EI ++ + ++L D   S+S I D D +    +P
Sbjct: 527 SVSQLRDNVLELLGLNTNEDHDRCVLYEIFSNKVYKYLSDG-DSISGILDADIIHCQILP 585

Query: 497 K 497
           K
Sbjct: 586 K 586



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/168 (42%), Positives = 116/168 (69%), Gaps = 5/168 (2%)

Query: 663 LEVFKNGPVTKK--ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWR 720
           L  FK  P TK+  +++E +++Y CL+ +  +E L   D WYCP CKE  +A+KK D+W+
Sbjct: 799 LPRFKEHPSTKQKISQSEAINIYQCLDLYTSKEKLGANDTWYCPSCKEHVEATKKFDIWK 858

Query: 721 LPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYG 780
            P+VLV+HLKRFS+S   + K++ F+++PI D +++ +V  K+ + +  Y+L+A+++H+G
Sbjct: 859 APDVLVVHLKRFSFSSYSRDKIDRFIDYPIQDLDISSFVHCKDLNLK--YDLFAVSDHFG 916

Query: 781 GMGSGHYTAHIKLLDENRWYNFDDSHISPI-NEDDVKSAAAYVLFYRR 827
           G+G GHYTA  K   + +WY FDDS  S + N + +K+++ YVLFY R
Sbjct: 917 GLGGGHYTACAKNHIDGKWYKFDDSRSSEVHNPESIKASSNYVLFYIR 964


>gi|299744855|ref|XP_001831310.2| ubiquitin-specific protease [Coprinopsis cinerea okayama7#130]
 gi|298406320|gb|EAU90473.2| ubiquitin-specific protease [Coprinopsis cinerea okayama7#130]
          Length = 1315

 Score =  206 bits (523), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 159/534 (29%), Positives = 237/534 (44%), Gaps = 91/534 (17%)

Query: 41  IDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYG-GGPTLARKVISS 99
           +DNS L++ +    PG        ++EG     +P EVW+   SWYG     + R+VI  
Sbjct: 167 VDNSPLLDASGRLTPG--------VVEGVQVEFVPAEVWSHFDSWYGPANHAIPRRVIER 218

Query: 100 GLSQTELAVEVYPLRLQLLVMPRGECS---------TIRISKKETIGELHRRACSIFYLN 150
           G+  T   +E+YP  +++  + R             TI++S  +T+ +L  R      + 
Sbjct: 219 GMFGTTTVLELYPAEIKVFRLSRDSAEKAAAGPHYPTIQVSMGDTLKDLCTRVADA--VK 276

Query: 151 LEQICIWDYYGHRKHALMNDM------DRTLDDANIQMDQDILVEVLDNVNGTNCKSSI- 203
           ++      Y   R  A+ +D         +L+DA+ ++  D    +L+N N  +  + I 
Sbjct: 277 IDPTVDTPYRVWRPTAVPDDWRSIDFPTSSLEDADAKV-IDESPHLLENQNIMSGDAFIV 335

Query: 204 ---QDNGF-----AEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASAR 255
              Q +G+     A  K     +EP          +    GTS +  +    S  L++A 
Sbjct: 336 EFKQPDGWLIDTQAAAKKPVAAIEPPPPLFDSKNSFFNRLGTSSSTVATTKASTELSTAF 395

Query: 256 DSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINW 314
                  +    T+    G  GL N+GNTCFMNSA+QCL HT E   YF    ++ E+N 
Sbjct: 396 TKPTISINKSSFTKTLEPGTLGLGNMGNTCFMNSALQCLAHTKELTEYFLNGVFKAELNR 455

Query: 315 QNPLGMV-------------------------------------------------ELLA 325
            NPLGM                                                  EL+A
Sbjct: 456 DNPLGMQGQIAEVFGALLERIWASSGPSTSYSPREFKQTLQRFAPQFSGYQQHDSQELVA 515

Query: 326 FLLDGLHEDLNRVKHKPYIKSKDADGRPDEEV---ADEYWANHIARNDSIIVDVCQGQYK 382
           FLLDGLHEDLNRV  KPY++  D +G  D E+   A + W  ++ RNDS+IVD+ QGQY+
Sbjct: 516 FLLDGLHEDLNRVIKKPYVEKPDWEGGGDAELVKLAAKSWEGYMLRNDSVIVDLFQGQYQ 575

Query: 383 STLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCR 442
           STLVCP C K+S+TFDPFMYL+LPL        T+     D         + + +    R
Sbjct: 576 STLVCPECEKISITFDPFMYLTLPLPVQKKWKHTIFYVPWDLEKPHVKVPIEINRDSSFR 635

Query: 443 DLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVP 496
           DL  VLG        E L + EI  H   + LDD L  ++ + + D +  + +P
Sbjct: 636 DLRNVLGRWVG-AIPENLLMLEIFQHKFYKLLDDSL-PVNEMSETDVIVCFELP 687



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 64/167 (38%), Positives = 103/167 (61%), Gaps = 19/167 (11%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            ++L  CLE F++EE L  +D+WYCP CK+ +QA+KK DLW+ P++LV+HLKRFS +R ++
Sbjct: 949  ITLQDCLEEFVKEEQLGEDDLWYCPSCKKHQQATKKFDLWKAPDILVVHLKRFSNNRILR 1008

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRR-------------------QLYELYALTNHYG 780
             K++TFV+FP+   +L   V  +  + R                    +Y+L+A+  H G
Sbjct: 1009 DKIDTFVDFPVEGLDLGDKVGERAVATRLKEQGVELEELKTVNLDEPLVYDLFAVDEHMG 1068

Query: 781  GMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            G+G GHY A+       +WY+FDD ++   + ++  ++ AY+LFYRR
Sbjct: 1069 GLGGGHYRAYASNHLTGKWYHFDDGYVKQASAEESVNSNAYLLFYRR 1115


>gi|432118439|gb|ELK38093.1| Ubiquitin carboxyl-terminal hydrolase 11 [Myotis davidii]
          Length = 513

 Score =  205 bits (522), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 165/519 (31%), Positives = 224/519 (43%), Gaps = 139/519 (26%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV +      GD               S  P  I+N+ L  D        G  
Sbjct: 56  WYKQWEVYVRE------GD------------EDPSTIPGCINNAKLFEDKINWQLKKG-- 95

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVIS-SGLSQTELAVEVYPLRLQ 116
               L+EG DY+LL    WN L SWYG   G P + RKV+   G+ +    VEVYP+ L 
Sbjct: 96  ----LVEGEDYVLLSTTAWNLLVSWYGLEHGQPPIERKVVDWRGICE----VEVYPVELL 147

Query: 117 LLVMPRGECS-TIRISKKETIGELHRRACSIFYLN-LEQICIWDYYGHRKHALMNDMDRT 174
           L      + + T   S+ ++I  + R A   F ++  E+  +W          + +   +
Sbjct: 148 LARHSDMDTTHTAEFSQTDSIDLVLRTAQDHFVVSPQEETRLWVKNAEGSFERLCNTRVS 207

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS 234
           L  A+I+  Q +++E                                  + S  G W + 
Sbjct: 208 LRTASIKSGQLVVME----------------------------------TRSKDGTWPSQ 233

Query: 235 KGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCL 294
           +  +R  SS           ++ +   G  G+          GL NLGNTCFMNSA+QCL
Sbjct: 234 Q--TRAASS---------VTKEEEEFHGQPGI---------CGLTNLGNTCFMNSALQCL 273

Query: 295 VHTPEFARYF-REDYRREINWQNPLGM--------------------------------- 320
            + P+   YF +  Y  E+N+ NPLGM                                 
Sbjct: 274 SNVPQLTEYFLKNRYLDELNFCNPLGMKGEIAEAYADLVKQAWSGRHRSIVPNVFKTKVG 333

Query: 321 --------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHI 366
                          ELL+FLLDGLHEDLNRVK K Y++  DA GRPD+EVA E W NH 
Sbjct: 334 HFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVEQCDAAGRPDQEVAVEAWQNHK 393

Query: 367 ARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSA 426
            RNDS+IVD   G +KSTLVCP C  VSVTFDPF YLS+PL  +  R M V   + D   
Sbjct: 394 RRNDSVIVDTFHGLFKSTLVCPDCGHVSVTFDPFCYLSVPLPVSHKRVMEVFFVSMDPRR 453

Query: 427 LPSTYTVTVPKHGRCRDLIQVLG---NICSLKQSEELKV 462
            P  + + VPK G+  DL   L     +   + SE L+V
Sbjct: 454 KPEQHRLVVPKKGKISDLCMALAKHTGVSPERGSEALRV 492


>gi|392589983|gb|EIW79313.1| cysteine proteinase [Coniophora puteana RWD-64-598 SS2]
          Length = 1272

 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 173/553 (31%), Positives = 245/553 (44%), Gaps = 109/553 (19%)

Query: 31  GSSASKRPSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGP 90
           GS   K    +DNS LV+            +  +L+EG D   LP++ W  L  WYG  P
Sbjct: 145 GSVEEKDVGPVDNSSLVDKDK--------NLTSSLVEGIDVEFLPEDAWQSLVMWYGQ-P 195

Query: 91  T--LARKVISSGLSQTELAVEVYPLRLQLLVMPRGECSTI--------RISKKETIGELH 140
              L RKVI+ G+ Q E  +E+ P RL+ L++   E   +         +S K+++  L 
Sbjct: 196 VHPLPRKVIARGVLQ-EPTLELRPPRLKALILKNLESGDVAGPPPCYVTLSTKDSLKRLC 254

Query: 141 RRACSIFY----------------LNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQ 184
           R   +                   L+  QI +  +  +    L+ + DR+L+D+ I+ D 
Sbjct: 255 RELITAVSPQVNAPYRVWKVDPAELSGSQIPVSKFSSYNPK-LLEESDRSLEDSLIEPDD 313

Query: 185 DILVEVLDN----VNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRN 240
             +VE  +N    V+ T   SS  D           L        S  G  S+S   +  
Sbjct: 314 PFVVEFQENGAWLVDATQVTSSAAD-------MPPPLFSSENDFFSRLGNRSSSSFGAGT 366

Query: 241 HSSEISTSPNLASARDSDNTLGSSGVTTRGASV----GLTGLLNLGNTCFMNSAIQCLVH 296
            S+ +S++     A+ S +T  S+G T          G  GL N+GNTCFMNSA+QCL H
Sbjct: 367 QSTLLSSTKTFTPAKPSAST--STGFTRSLNKPIQMPGTLGLGNMGNTCFMNSALQCLAH 424

Query: 297 TPEFARYFRED-YRREINWQNPLGMV---------------------------------- 321
             E   YF    Y +E+N  NPLGM                                   
Sbjct: 425 NKELMDYFLFGVYHQELNPDNPLGMQGAIAEAFGALVDKIWATNSTMSSYSPREFKMALQ 484

Query: 322 ---------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEV---ADEYWA 363
                          EL+AFLLDGLHEDLNRV  KPY++  D DG  D E+   A + W 
Sbjct: 485 RFAPQFSGYQQHDSQELVAFLLDGLHEDLNRVLKKPYVEKPDWDGGGDVELVQLAQKSWD 544

Query: 364 NHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSD 423
            +  RNDS+IVD+ QGQY+STLVCP C K+S+TFDPFMYL+LPL  T     TV     D
Sbjct: 545 GYKLRNDSVIVDLFQGQYQSTLVCPECQKISITFDPFMYLTLPLPITKKWRGTVYYVPWD 604

Query: 424 GSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLST 483
                    V V +    ++L   +G   +    E L   EI N+   + LDD ++ +  
Sbjct: 605 TERPHYKVLVEVGRDSSFKELRNQVGKYMNTP-PENLLTLEIFNNRFYKSLDDNVL-VGD 662

Query: 484 IKDDDHLAAYRVP 496
           + D D +  + +P
Sbjct: 663 MSDKDIIVCFELP 675



 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 68/172 (39%), Positives = 105/172 (61%), Gaps = 19/172 (11%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A  + ++L  CL  F +EE L  +D+WYCP+CK+ +QA+KK  LW  P++LV+HLKRFS 
Sbjct: 925  AEKKNITLGDCLAEFTKEEQLGEDDLWYCPKCKKHQQATKKFTLWNAPDILVVHLKRFSN 984

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRR-------------------QLYELYAL 775
            SR+M+ K++  V+FPI   +LT  V  + ++RR                    LY+L+A+
Sbjct: 985  SRAMRDKIDALVDFPIEALDLTDMVGERKATRRLAESGVDVQTLGLENDDDPLLYDLFAV 1044

Query: 776  TNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
              H GG+G GHY A+      ++WY+FDDS+++    +   +A AY+LFY+R
Sbjct: 1045 DEHLGGLGGGHYRAYAHHYGTDKWYHFDDSYVTESTAEQSVNANAYLLFYQR 1096


>gi|345480919|ref|XP_003424246.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 31-like isoform 2
           [Nasonia vitripennis]
          Length = 963

 Score =  204 bits (519), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 173/652 (26%), Positives = 293/652 (44%), Gaps = 134/652 (20%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHT------------------------------------ 297
           G+ GL N GNTCFMN+ +QCL HT                                    
Sbjct: 182 GVIGLRNHGNTCFMNAVLQCLSHTDRLAKYFVMDTYKDDLSKNKKLNSKKFGTKGEITEQ 241

Query: 298 --------------PEFARYFR---EDYRREINWQNPLGMVELLAFLLDGLHEDLNRVKH 340
                         PE +  F+   + Y  +          E L +LLD +HEDLN+  +
Sbjct: 242 LALLLKAIWSCQYDPEMSTAFKSVVDKYGSQYRGNLQHDAQEFLLWLLDKVHEDLNQATN 301

Query: 341 KPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPF 400
           K Y   K++ G+P E VA+E +ANH+  N S + +V Q Q++S+L CP C   S TFDPF
Sbjct: 302 KKYKIIKNSFGQP-ESVAEETFANHVRCNKSFVHEVFQAQFRSSLTCPRCQMQSNTFDPF 360

Query: 401 MYLSLPL-QATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEE 459
           + +S+P+ Q+    ++ V V  +          V+V +    ++L ++L +   + ++  
Sbjct: 361 LCVSVPVPQSQRQMSLFVNVLYTSQQPRQVRIGVSVNQSANVKELREILASDTRVDENHM 420

Query: 460 LKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKA----VFLQLIHRLQEQE 515
           L + E+ +    R   D    LS I ++D L    +P+L +      + L  I+ L + +
Sbjct: 421 L-LTEVHDEGFHRTFSD-CQPLSVITENDPLYCIELPQLKEPTEQAYILLVWINVLVKGD 478

Query: 516 PGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSM 575
                     + +G+P    +SR+   S   +Q  + + +   L  + L  + S  P   
Sbjct: 479 --------LRERFGSPYTMQVSRE--TSYEDLQKLLLKEMHATLADDVLTSSQS--PGLF 526

Query: 576 -VTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIP 634
            +   DP       +++ +  E       V  P    Q+     +C D S  G + +++ 
Sbjct: 527 NIRVADP-------AATPVQDEHPCIDPCVEHPLYTEQIEQALALCADDS--GPQHVKLI 577

Query: 635 ---SSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLR 691
                +T   +  D + ++ E  +   L++  E    G VT         L  C + + R
Sbjct: 578 LEWDEATKCNIIQDDTDQIEEHASVKQLKSTSEF--GGTVT---------LEECFDLYTR 626

Query: 692 EEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF---SYSRSMKHKLETFVNF 748
            E L  ED W+CP C  +++  KKL LW LP +LVIHLKRF   S  RS   KL   V+F
Sbjct: 627 AETLGVEDAWHCPHCNRKQEVVKKLGLWSLPAILVIHLKRFRQQSKQRSTS-KLTMLVDF 685

Query: 749 PIHDFNLTKYVA------------------------NKNSSRRQ--------LYELYALT 776
           P++ F++T ++A                         K++S++Q        +Y+LYA+ 
Sbjct: 686 PLYGFDMTPHLARNGVQAQQLSQVTTTTVGIGWPTFKKHTSKQQPVTNYDNNVYDLYAIC 745

Query: 777 NHYG-GMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           NH+G  +  GHYTA  +   +++WY+FDD+ +  +N+ ++ + AAY+LFY++
Sbjct: 746 NHHGQDLQGGHYTAFCRNPYDSQWYSFDDTRVEAVNDTNLVTNAAYILFYQK 797


>gi|345480921|ref|XP_001606702.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 31-like isoform 1
           [Nasonia vitripennis]
          Length = 979

 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 173/652 (26%), Positives = 293/652 (44%), Gaps = 134/652 (20%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHT------------------------------------ 297
           G+ GL N GNTCFMN+ +QCL HT                                    
Sbjct: 182 GVIGLRNHGNTCFMNAVLQCLSHTDRLAKYFVMDTYKDDLSKNKKLNSKKFGTKGEITEQ 241

Query: 298 --------------PEFARYFR---EDYRREINWQNPLGMVELLAFLLDGLHEDLNRVKH 340
                         PE +  F+   + Y  +          E L +LLD +HEDLN+  +
Sbjct: 242 LALLLKAIWSCQYDPEMSTAFKSVVDKYGSQYRGNLQHDAQEFLLWLLDKVHEDLNQATN 301

Query: 341 KPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPF 400
           K Y   K++ G+P E VA+E +ANH+  N S + +V Q Q++S+L CP C   S TFDPF
Sbjct: 302 KKYKIIKNSFGQP-ESVAEETFANHVRCNKSFVHEVFQAQFRSSLTCPRCQMQSNTFDPF 360

Query: 401 MYLSLPL-QATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEE 459
           + +S+P+ Q+    ++ V V  +          V+V +    ++L ++L +   + ++  
Sbjct: 361 LCVSVPVPQSQRQMSLFVNVLYTSQQPRQVRIGVSVNQSANVKELREILASDTRVDENHM 420

Query: 460 LKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKA----VFLQLIHRLQEQE 515
           L + E+ +    R   D    LS I ++D L    +P+L +      + L  I+ L + +
Sbjct: 421 L-LTEVHDEGFHRTFSD-CQPLSVITENDPLYCIELPQLKEPTEQAYILLVWINVLVKGD 478

Query: 516 PGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSM 575
                     + +G+P    +SR+   S   +Q  + + +   L  + L  + S  P   
Sbjct: 479 --------LRERFGSPYTMQVSRE--TSYEDLQKLLLKEMHATLADDVLTSSQS--PGLF 526

Query: 576 -VTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIP 634
            +   DP       +++ +  E       V  P    Q+     +C D S  G + +++ 
Sbjct: 527 NIRVADP-------AATPVQDEHPCIDPCVEHPLYTEQIEQALALCADDS--GPQHVKLI 577

Query: 635 ---SSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLR 691
                +T   +  D + ++ E  +   L++  E    G VT         L  C + + R
Sbjct: 578 LEWDEATKCNIIQDDTDQIEEHASVKQLKSTSEF--GGTVT---------LEECFDLYTR 626

Query: 692 EEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF---SYSRSMKHKLETFVNF 748
            E L  ED W+CP C  +++  KKL LW LP +LVIHLKRF   S  RS   KL   V+F
Sbjct: 627 AETLGVEDAWHCPHCNRKQEVVKKLGLWSLPAILVIHLKRFRQQSKQRSTS-KLTMLVDF 685

Query: 749 PIHDFNLTKYVA------------------------NKNSSRRQ--------LYELYALT 776
           P++ F++T ++A                         K++S++Q        +Y+LYA+ 
Sbjct: 686 PLYGFDMTPHLARNGVQAQQLSQVTTTTVGIGWPTFKKHTSKQQPVTNYDNNVYDLYAIC 745

Query: 777 NHYG-GMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           NH+G  +  GHYTA  +   +++WY+FDD+ +  +N+ ++ + AAY+LFY++
Sbjct: 746 NHHGQDLQGGHYTAFCRNPYDSQWYSFDDTRVEAVNDTNLVTNAAYILFYQK 797


>gi|297709837|ref|XP_002831614.1| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal
           hydrolase 11 [Pongo abelii]
          Length = 934

 Score =  203 bits (517), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 161/482 (33%), Positives = 207/482 (42%), Gaps = 135/482 (28%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  YV        GD  S            S  P  I+N+ L  D           
Sbjct: 109 WYKQWEAYVQ------GGDQDS------------STFPGCINNATLFQDEINW------R 144

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L+EG DY+LLP   W+ + SWYG   G P + RKVI     Q    VEVYP+ L L
Sbjct: 145 LKEGLVEGEDYVLLPAAAWHDMVSWYGLEHGQPPIERKVIELPNIQ---KVEVYPVEL-L 200

Query: 118 LVMPR--GECSTIRISKKETIGELHRRACSIFYLN-LEQICIWDYYGHRKHALMNDMDRT 174
           LV     G+  T++ S  ++IG + R A   F +   E   +W          + D   T
Sbjct: 201 LVRHNDLGKSHTVQFSHTDSIGLVLRTARERFLVEPQEDTRLWAKNSEGSLDRLYDTHIT 260

Query: 175 LDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS 234
           + DA ++  Q I++E                     KK                G W   
Sbjct: 261 VLDAALETGQLIIMET-------------------RKKD---------------GTWP-- 284

Query: 235 KGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCL 294
                  S+++    N  S  D D               G+ GL NLGNTCFMNSA+QCL
Sbjct: 285 -------SAQLHVMNNNMSEEDEDFK----------GQPGICGLTNLGNTCFMNSALQCL 327

Query: 295 VHTPEFARYFRED-YRREINWQNPLGM--------------------------------- 320
            + P+   YF  + Y  E+N++NPLGM                                 
Sbjct: 328 SNVPQLTEYFLNNCYLEELNFRNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVG 387

Query: 321 --------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHI 366
                          ELL+FLLDGLHEDLNRVK K Y++  DA GRPD+EVA E W NH 
Sbjct: 388 HFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVELCDAAGRPDQEVAQEAWQNHK 447

Query: 367 ARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSA 426
            RNDS+IVD   G +KSTLVCP C  VSVTFDPF YLS+PL  +  R + V     D   
Sbjct: 448 RRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSVPLPISHKRVLEVFFIPMDPRR 507

Query: 427 LP 428
            P
Sbjct: 508 KP 509



 Score =  155 bits (392), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 84/209 (40%), Positives = 124/209 (59%), Gaps = 15/209 (7%)

Query: 628 DKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKN-----GPVTKKARTEPLSL 682
           D+T           + +DW  ++ ++Y   + E   E +       G V KKA   P+ L
Sbjct: 698 DRTTSPEEVHAQPYIAIDWEPEMKKRY---YDEVEAEGYVKHDTCVGYVMKKA---PVRL 751

Query: 683 YTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKL 742
             C+E F   E L  E+ WYCP CK+ + A+KKLDLW LPE+L+IHLKRFSY++  + KL
Sbjct: 752 QECIELFTTVETLEKENPWYCPSCKQHQLATKKLDLWMLPEILIIHLKRFSYTKFSREKL 811

Query: 743 ETFVNFPIHDFNLTKYVAN-KNSSRRQL--YELYALTNHYGGMGSGHYTAHIKLLDENRW 799
           +T V FPI D + +++V   +N S  +L  Y+L A++NHYGGM  GHYT         +W
Sbjct: 812 DTLVEFPIRDLDFSEFVIQPQNDSNPELYKYDLIAVSNHYGGMRDGHYTTFACFKGSGQW 871

Query: 800 YNFDDSHISPINEDDVKS-AAAYVLFYRR 827
           + FDD+ ++ +NE+ ++   AAYVLFY+R
Sbjct: 872 HYFDDNSVTAVNENQIEVLKAAYVLFYQR 900


>gi|242013591|ref|XP_002427486.1| ubiquitin carboxyl-terminal hydrolase, putative [Pediculus humanus
           corporis]
 gi|212511881|gb|EEB14748.1| ubiquitin carboxyl-terminal hydrolase, putative [Pediculus humanus
           corporis]
          Length = 1585

 Score =  203 bits (516), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 163/535 (30%), Positives = 234/535 (43%), Gaps = 150/535 (28%)

Query: 37  RPSGIDNSDLVNDATAEDP---GAGPEIVDTLLEGR---DYILLPQEVWNQLHSWYGGGP 90
           RP  I+NS+L+     + P   G G ++   L   +   D+ L+ Q +W  L  WYGG P
Sbjct: 477 RPGPINNSNLIQSPAYKVPSLTGEGGKLRKNLCLNQNNGDFQLVSQSLWTALTLWYGGEP 536

Query: 91  TLARKVI-SSGLSQTELAVEVYPLRLQLLV---------------MPRGECSTI------ 128
           +L R+VI  +  +Q +L  E+YP+ ++ L                M  G  ++       
Sbjct: 537 SLPRQVIMPTNSAQPDL--ELYPINIRFLKHATQNNRQQINNWSGMVGGYGASAIGNAGY 594

Query: 129 ------------------RISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMND 170
                               SK  T+ ++++  C+   +  E + +W Y       ++ +
Sbjct: 595 AYVTNLTATSRRYLAYVGAFSKMATLKQVYQYLCNKLRIRFEDMRLWLYRDESNMFILEE 654

Query: 171 MDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGG 230
            D TLD+  I  +  IL+E+ +           +D  + E+ +S                
Sbjct: 655 EDSTLDELGILDEDQILIEIRN-----------KDLTWPEELSS---------------- 687

Query: 231 WSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSA 290
                               +AS   +D   G      +GA    TGL NLGNTCFMN+A
Sbjct: 688 --------------------IASNTSNDKRQGELSALEKGA----TGLNNLGNTCFMNAA 723

Query: 291 IQCLVHTPEFARYFRED-YRREINWQNPLGMV---------------------------- 321
           +QC+ +T    +YF    +  E+N  NPLGM                             
Sbjct: 724 LQCVSNTQVLTQYFTSKMHLYELNRNNPLGMKGHIALRYADLIDNIWSGSNRTIAPLKLR 783

Query: 322 -------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYW 362
                              ELLAFLLDGLHEDLNRV  KPY++ KD+DGRPD  VA E W
Sbjct: 784 WTIGKYAPRFNGFQQHDSQELLAFLLDGLHEDLNRVHDKPYVELKDSDGRPDVIVAQEAW 843

Query: 363 ANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTS 422
            NHI RN SIIVD+  GQ KS + C +C+  SV FDPF YLSLPL   +    +VTV   
Sbjct: 844 ENHILRNKSIIVDLFHGQLKSKVTCNMCSHESVRFDPFNYLSLPLPMESYLHFSVTVIKL 903

Query: 423 DGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDD 476
           DGS +P  Y V +    +   L   L N+C +  S  +K+AE+QN  I+  +LDD
Sbjct: 904 DGS-VPVKYGVRINNDEKYGALKTELSNLCGIP-SHLIKLAEVQNALIKHVYLDD 956



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 122/263 (46%), Gaps = 30/263 (11%)

Query: 504  FLQLIHRLQEQEPGAAQTTSQWKA--YGTPLV----SSISRDDVISSGKIQSTVQRMLSP 557
            F+  +HR   ++     ++S+ K   +G P++     S++  D+  S  + + V R++SP
Sbjct: 1158 FIVAVHRKMMRQETYFLSSSKTKPSLFGLPVIVPCGESVTHQDLYQS--VWTQVARLVSP 1215

Query: 558  FLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDES 617
                E++ HA   D S                   +  E   + KAV+   L   +    
Sbjct: 1216 LPPGETVNHATDCDDS-------------------LGYEFPFTLKAVSPDGLVCSICPWY 1256

Query: 618  NVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKART 677
              C    ++   +  + ++S    + +DW    L       LE ++   ++   T+   +
Sbjct: 1257 RFCRGCRIQCSLSEFLHNTS---YLAIDWDPTALHLRYQTCLEKIVIEHESVARTRHQMS 1313

Query: 678  EPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRS 737
            EP+SL  CLEAF REE L  ++  YC +CK    A+KKL +WRLP +L++HLKRF Y   
Sbjct: 1314 EPISLNHCLEAFTREETLSEDEKVYCSKCKSHEIATKKLQIWRLPPILIVHLKRFQYVNE 1373

Query: 738  MKHKLETFVNFPIHDFNLTKYVA 760
               K +  V FP+  F+ T Y+A
Sbjct: 1374 KWIKSQKVVEFPVKGFDPTMYLA 1396



 Score = 46.2 bits (108), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 770  YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            Y LY++  H G +G GHY ++        WY ++DS    +N+  +  ++AY+LFY R
Sbjct: 1492 YNLYSVVCHSGMLGGGHYVSY-ACNPRGIWYCYNDSSCKQVNQSQMDLSSAYMLFYER 1548


>gi|353238811|emb|CCA70745.1| related to UBP12-ubiquitin C-terminal hydrolase [Piriformospora
           indica DSM 11827]
          Length = 1142

 Score =  202 bits (514), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 164/546 (30%), Positives = 231/546 (42%), Gaps = 101/546 (18%)

Query: 39  SGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGG-GPTLARKVI 97
           S +DNSDLV++           ++  L EG  Y L+ +E W+    WYG    T+ RK+I
Sbjct: 137 SAVDNSDLVDEHGT--------LLPALAEGTKYELICKEAWDLFVEWYGPPNLTIPRKII 188

Query: 98  SSGLSQTELAVEVYPLRLQLLVMPR-------GECSTIRISKKETIGELHRRACSIFYLN 150
           + G+   +  VEVYP +L +  M +           TI IS+   + EL  +   I  L+
Sbjct: 189 TEGIHHVK-RVEVYPYKLSVFRMSKLTPPSSHAVTPTIEISRAAKVKELIDQVVQISALD 247

Query: 151 LEQICIWDYYG------------HRKHALMND----------MDRTLDDANIQMDQDILV 188
            + +  W   G            +    L  D          +D+ LD+A ++    I+ 
Sbjct: 248 KDDLRFWLIMGTVLETKPLDGTFYPSDRLQADEAQPFPPAESLDKRLDEALVESGDAIVY 307

Query: 189 EVLDNVNGT------NCKSSIQDN-GFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNH 241
           E    + GT      + K +  +N   A +   +   +      S A        T+   
Sbjct: 308 EY--RIQGTWTVDIDSLKIATTNNRTLAAENKPAFFTDLKTKYNSPANNAIKPMSTTGYT 365

Query: 242 SSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFA 301
            +    S  + + +    T   S  TT     G  GL NLGNTCFMNSA+QCL HTPE  
Sbjct: 366 ITPTVGSTAVTAFKQPSTTTSISAYTTPSRPPGAVGLNNLGNTCFMNSALQCLAHTPELT 425

Query: 302 RYFRED-YRREINWQNPLGMV--------------------------------------- 321
            YF    YR E+N  NPLGM                                        
Sbjct: 426 EYFLTGVYRTELNPTNPLGMKGAIAEVFGGVLDKLWHPISYAVAPREFKQQLQRFAPQFS 485

Query: 322 --------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEV---ADEYWANHIARND 370
                   E LAFLLDGLHEDLNRV  KPY+++ D +G  ++E+   A   W  +  RND
Sbjct: 486 GYAQHDTQEFLAFLLDGLHEDLNRVLKKPYVENPDWNGGGEKELVKHAATAWEGYKKRND 545

Query: 371 SIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPST 430
           S+IVD+ QGQYKSTLVCP C KVS+TFDPFMYL+LPL         +     D       
Sbjct: 546 SVIVDLFQGQYKSTLVCPECEKVSITFDPFMYLTLPLPVLRIWEHEICWVPYDVEKPRLQ 605

Query: 431 YTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHL 490
             V + K    +DL  ++          ++ + E   H + +  DD    L  I D D +
Sbjct: 606 IPVQLSKDASIKDLKLLMKKWMGTPVENQICI-ETFGHKVYKDFDD-TNPLGEIADRDTI 663

Query: 491 AAYRVP 496
             Y +P
Sbjct: 664 VIYELP 669



 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/169 (40%), Positives = 108/169 (63%), Gaps = 21/169 (12%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            ++L  CL+ F +EE L  +D+WYCP+CK+ +QA+KK +LW+ P+VLV+HLKRFS SR ++
Sbjct: 934  ITLEDCLDEFTKEERLGEDDLWYCPRCKKHQQATKKFELWKTPDVLVVHLKRFSNSRLLR 993

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRRQ---------------------LYELYALTNH 778
             K++ FV+FPI   +LT+ V  +  +++                      +Y+L+A+  H
Sbjct: 994  DKIDAFVDFPIEGLDLTERVEERLVAKKWVEEGHELEELGLQSESGDQSLVYDLFAVDEH 1053

Query: 779  YGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             GG+G GHY A+ K  +++ WY+FDD+H+S     D  ++ AY+LFYRR
Sbjct: 1054 LGGLGGGHYRAYAKNFEDDTWYHFDDTHVSTSKAKDSVNSNAYLLFYRR 1102


>gi|343425268|emb|CBQ68804.1| related to UBP12-ubiquitin C-terminal hydrolase [Sporisorium
           reilianum SRZ2]
          Length = 1405

 Score =  202 bits (514), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 177/545 (32%), Positives = 253/545 (46%), Gaps = 103/545 (18%)

Query: 41  IDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGG-GPTLARKVISS 99
           IDNSDLV++   E   +   +   + E  DY +LP+E WN L SWYG  GP  ARKVI  
Sbjct: 252 IDNSDLVDE---ESTPSFARLRPRINEHMDYEMLPEEGWNLLVSWYGSTGPLFARKVID- 307

Query: 100 GLSQTELAVEVYP--LRLQLLV----MPRGECSTIRISKKETIGELHRRACSIFYLNLEQ 153
           GLS  + +VE YP  +RL  LV    +      +  +S   ++ EL  +A +   LNL  
Sbjct: 308 GLSPGQESVEFYPPTIRLLKLVDDDSVQGSGVPSFSLSVSTSLAELKAKAKT--GLNLGS 365

Query: 154 ICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKS-------SIQDN 206
           +   D    R H      D+ L    + + + +  E +D ++    K        S++  
Sbjct: 366 VADVDI---RFHHFPEPTDKELLTGLVSLAR-VSDEGVDTIDAREDKPDSYQPNISLKSV 421

Query: 207 GFAEKKASSVL-----------VEPSKSSLSIAGGWSASKG-----------TSRNHSSE 244
           G  E + + V+             P ++S +   G  A +G            +   +S 
Sbjct: 422 GVDEIEMNLVVETRQSGRWQTDPAPVETSATSVKGIFAQQGDFFSNLQQNGANASASASA 481

Query: 245 ISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF 304
              S ++A A+       ++   T G S GL GL NLGNTCFMNSA+QCL +T E  +YF
Sbjct: 482 SGASGSVADAQARVTRSQTAADRTMGRSRGLRGLNNLGNTCFMNSALQCLSNTYELQQYF 541

Query: 305 RED-YRREINWQNPLGM------------------------------------------- 320
               Y+ E+N  NPLGM                                           
Sbjct: 542 VSGAYKEELNTDNPLGMGGAIADAFGNLISNIWNGQGGSFWPREFKFALSRFAPQFSGYA 601

Query: 321 ----VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEV---ADEYWANHIARNDSII 373
                ELLAFLLDGLHEDLNR+  KPYI++ D +G  + ++   A   W  + ARNDS+I
Sbjct: 602 QHDSQELLAFLLDGLHEDLNRILKKPYIEAPDWEGGDERDLVAFAKRQWDIYKARNDSVI 661

Query: 374 VDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTV 433
           VD+ QGQY+STLVCP C KVS+ FDPFMYL+LP+         V     D S    ++ V
Sbjct: 662 VDLFQGQYRSTLVCPDCGKVSIKFDPFMYLTLPIPNKKMWRGQVYFVPLDPSKPMHSFQV 721

Query: 434 TVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDD--PLISLSTIKDDDHLA 491
            +P       L Q +     + +++ L   E+ +H I +++DD  PLI    IKD D + 
Sbjct: 722 QLPAGTTVGKLRQKVAAQFGI-ETKRLVCGEVWHHRIYKWIDDYEPLID---IKDGDFVY 777

Query: 492 AYRVP 496
            + VP
Sbjct: 778 FFEVP 782



 Score =  167 bits (424), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 93/261 (35%), Positives = 129/261 (49%), Gaps = 47/261 (18%)

Query: 614  VDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEK----------YNTHFLENLL 663
             DE +   D S +   +  IP   T   + V WS  + E+              F E + 
Sbjct: 1040 ADELDGDGDDSKDAKPSKAIPLVYTGGAIVVTWSHTVKERGLLVESDSQQLWGEFEEVID 1099

Query: 664  EVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPE 723
            E  +       AR + LS+  C++ F REE L  +D WYCP CKE RQA+KK DLW+ P+
Sbjct: 1100 EAIRQRENAGPARPKTLSIEDCMDEFTREEQLGEDDPWYCPNCKEFRQATKKFDLWKAPD 1159

Query: 724  VLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSR----------------- 766
            +LV+HLKRFS  R  + KL   V+FP+   +LT  V    + R                 
Sbjct: 1160 ILVVHLKRFSAGRHSRDKLNMLVDFPLEGLDLTDRVEGTQALRRVQEEAKESGEELSESM 1219

Query: 767  -------------------RQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHI 807
                               R +Y+LYA+ NH+GG+G GHYTA  K   + +WY FDDS +
Sbjct: 1220 LGSGILRPLEDNDDAVAVDRPIYDLYAVDNHFGGLGGGHYTAFAKSPADGKWYEFDDSSV 1279

Query: 808  SPI-NEDDVKSAAAYVLFYRR 827
             P+ N + VKS++AY+LFYRR
Sbjct: 1280 RPVANPETVKSSSAYLLFYRR 1300


>gi|449547942|gb|EMD38909.1| hypothetical protein CERSUDRAFT_104201 [Ceriporiopsis subvermispora
           B]
          Length = 1264

 Score =  202 bits (514), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 160/558 (28%), Positives = 244/558 (43%), Gaps = 94/558 (16%)

Query: 22  SLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQ 81
           +L    +  G    K    +DN+DLV+        A    V   +E  D   +PQ+VW  
Sbjct: 139 ALSGEVDKEGGVEEKDVGPVDNTDLVD--------ASGNFVSQAIEHVDVEFVPQKVWTM 190

Query: 82  LHSWYGGG-PTLARKVISSGLSQTELAVEVYPLRLQLLVM----PRG---ECSTIRISKK 133
              WYG       RKVI+ GL+  E ++E++P R+ +  +    P G       + IS +
Sbjct: 191 FEEWYGHARQPQPRKVIARGLA-NEPSLEIHPPRVNVYTLTAFAPPGITVRPREVTISSQ 249

Query: 134 ETIGELHRRACSIFY---LNLEQICIWDYYGHRKH---------------ALMNDMDRTL 175
           +T+  ++R     F    ++  +  +W       H                L+   ++T+
Sbjct: 250 DTMIAVYRSFAEEFAKTEVDQRKYRVWKLADGASHNNIRYTPDLLKLHGATLLQPSEKTV 309

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            +  I+     +VE   +       + I  +G       +    PS+   S    + +S 
Sbjct: 310 GEELIEAGDGFVVEFQGSDQWVVDAAEIPASGSLGTSQETETAAPSQPLFSDGSDFFSSL 369

Query: 236 GTSRNHSSEISTSPNLASA----RDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAI 291
              +  +S    S +L+SA    R   +   S+    +    G  GL N+GNTCFMNSA+
Sbjct: 370 QLQKRSTSPKQESTSLSSAFSPRRMWSDPDSSAKANAKTVVPGTLGLGNMGNTCFMNSAL 429

Query: 292 QCLVHTPEFARYFRED-YRREINWQNPLGM------------------------------ 320
           QCL HT E   YF    +  E+N+ NPLGM                              
Sbjct: 430 QCLAHTQELTDYFLMGVFEDELNFDNPLGMHGQIAQAFGALLRRIWAPNSSATSYSPREF 489

Query: 321 -------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVA--- 358
                               EL+AFLLDGLHEDLNR+  KPYI+  D +G  D ++A   
Sbjct: 490 KQALQRFAPQFSGYQQHDSQELVAFLLDGLHEDLNRILKKPYIEKPDWEGGDDRDLAKLA 549

Query: 359 DEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVT 418
           +E W  ++ RNDS+IVD+ QGQY+STLVCP C+KVS+TFDPFMYL+LPL      + T+ 
Sbjct: 550 NESWQGYLRRNDSVIVDLFQGQYQSTLVCPECSKVSITFDPFMYLTLPLPVQKKWSHTIF 609

Query: 419 VFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPL 478
               D S       V + +    RDL Q+LG        + L   EI N+   + LDD  
Sbjct: 610 YVPWDLSKPHVKLPVEIGRDASFRDLRQLLGRWMD-AHPDNLLTLEIFNNRFYKDLDDTC 668

Query: 479 ISLSTIKDDDHLAAYRVP 496
           + +  + ++D +  + +P
Sbjct: 669 L-VGEVAENDIIVCFELP 685



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/167 (42%), Positives = 108/167 (64%), Gaps = 19/167 (11%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            +SL  CL+ F REE L  +D+WYCP CK+ +QA+K+ DLW++P+VLV+HLKRFS SR+++
Sbjct: 952  ISLQDCLDEFTREERLGEDDLWYCPSCKKHQQATKRFDLWKVPDVLVVHLKRFSNSRALR 1011

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRR-------------------QLYELYALTNHYG 780
             K++TFV+FPI   +LT+ V  +  + R                    +Y+LYA+  H G
Sbjct: 1012 DKIDTFVDFPIEGLDLTEMVGERLVADRLKAQGVDTQELGMSGTDEPLVYDLYAVDEHLG 1071

Query: 781  GMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            G+G GHY A+     + +WY+FDDS+++P   +   ++ AY+LFYRR
Sbjct: 1072 GLGGGHYRAYALNDTDKQWYHFDDSYVTPTRAEAAVNSNAYLLFYRR 1118


>gi|409040949|gb|EKM50435.1| hypothetical protein PHACADRAFT_129620 [Phanerochaete carnosa
           HHB-10118-sp]
          Length = 1312

 Score =  201 bits (511), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 160/526 (30%), Positives = 231/526 (43%), Gaps = 101/526 (19%)

Query: 64  TLLEGRDYILLPQEVWNQLHSWYGGGPT-LARKVISSGLSQTELAVEVYPLRLQLLVMPR 122
           ++ EG D   LPQE W+ + SWYG   T + RKVI  GL+Q E+ +E++P +L   V+  
Sbjct: 175 SVTEGVDVQFLPQEAWDLIVSWYGEPNTPIPRKVIKRGLAQ-EITLELFPPKLYAHVLTP 233

Query: 123 GECSTIRIS---------------------------------KKETIGELHRRACSIFYL 149
                +  S                                 K   +GE    +  I   
Sbjct: 234 DSAGALTPSTPVEVVVSSTDALRDVRKKLFDAVCSDSANAEFKVWALGEWQPTSKYISLS 293

Query: 150 NLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFA 209
             +++   D      H   + +    D   +++ QD    V D  +     SS Q    A
Sbjct: 294 EFKRMDAPDQLVGDTHTFEDSVFEDQDAFAVEVKQDGQWLVQDTKDSQTALSSSQQTPPA 353

Query: 210 EKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTR 269
           +        EP+    S +  +S  +       S + ++  +A+ R++ +   +   +T 
Sbjct: 354 DN-------EPTPLFQSGSDFFSQMQAKKPQPVSTLKSA--IAAIRETKDPRPAPKAST- 403

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM-------- 320
             + G  GL N+GNTCFMNSAIQCLVHTPE A YF    + +E+N  NPLGM        
Sbjct: 404 -ITPGTLGLGNMGNTCFMNSAIQCLVHTPELADYFLTGVFEKELNPDNPLGMHGQIAQAF 462

Query: 321 -----------------------------------------VELLAFLLDGLHEDLNRVK 339
                                                     EL+AFLLDGLHEDLNR+ 
Sbjct: 463 GALLRKIWAPTSSATSYSPREFKAVLSKFAPQFSGYQQHDSQELVAFLLDGLHEDLNRII 522

Query: 340 HKPYIKSKDADGRPDEEV---ADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVT 396
            KPY++  D +G  D+E+   A E W  ++ RNDS+IVD+ QGQY+STLVCP C KVS+T
Sbjct: 523 KKPYVEKPDWEGGGDKELVSLARESWDGYLKRNDSVIVDLFQGQYQSTLVCPECEKVSIT 582

Query: 397 FDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQ 456
           FDPFMYL+LPL        TV     D         V + +    +DL  + G    +  
Sbjct: 583 FDPFMYLTLPLPVQKKWKHTVHYVPWDLEKPHLKVPVEINRDSSFKDLRNLFGRWFDVN- 641

Query: 457 SEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKA 502
            E L   EI NH   + LDD +I    + D+D +  + +P   K+A
Sbjct: 642 PENLLTLEIFNHRFYKNLDDTII-CGDMTDNDVIVCFELPCNSKQA 686



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/190 (37%), Positives = 113/190 (59%), Gaps = 21/190 (11%)

Query: 657  HFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKL 716
             F+   ++  +     KK+R   +SL  CL+ F ++E L  +D+WYCP+CK+ +QA+K  
Sbjct: 917  EFVHPEIKASREAASQKKSRG--ISLQDCLDEFTKKEQLGEDDLWYCPRCKKHQQATKSF 974

Query: 717  DLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRR--------- 767
            DLW +P+VLV+HLKRFS SR ++ K++TFV+FP+   +LT  V  +  + R         
Sbjct: 975  DLWSVPDVLVVHLKRFSNSRILRDKIDTFVDFPLSGLDLTSMVGQRKVASRLVEKGEDPK 1034

Query: 768  ----------QLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKS 817
                       +Y+L+A+  H GG+G GHY A+     + +W++FDDS++SP   +   +
Sbjct: 1035 ELGLDDIDEPLVYDLFAVDEHLGGLGGGHYRAYALNSADQQWHHFDDSYVSPARPEAAVN 1094

Query: 818  AAAYVLFYRR 827
              AY+LFYRR
Sbjct: 1095 QNAYLLFYRR 1104


>gi|395836398|ref|XP_003791143.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 43 [Otolemur
           garnettii]
          Length = 1135

 Score =  201 bits (511), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 171/641 (26%), Positives = 280/641 (43%), Gaps = 117/641 (18%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLV-------------------------------------- 295
           G  GL N GNTCFMN+ +QCL                                       
Sbjct: 99  GAQGLKNHGNTCFMNAVVQCLSNTDLLAEFLALGRYRAAPGRAEVTEQLAALVRALWTRE 158

Query: 296 HTPEFARYFR---EDYRREINWQNPLGMVELLAFLLDGLHEDLNRVKHKPYIK--SKDAD 350
           +TP+ +  F+     Y  +    +    +E L +LLD +HEDL      P  +  S +A 
Sbjct: 159 YTPQLSAEFKNAVSKYGSQFQGNSQHDALEFLLWLLDRVHEDLEGSSRGPVPEKLSPEAS 218

Query: 351 GRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQAT 410
              +  V+    +  ++   S +    Q QY+S+L CP C K S TFDPF+ +SLP+   
Sbjct: 219 KTSENHVSP---STPLSLGQSFVQSHFQAQYRSSLTCPHCLKQSNTFDPFLCVSLPIPLR 275

Query: 411 TTRTMTVT-VFTSDGS-------ALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKV 462
            TR ++VT VF S G        A+P   TV        R ++   G +     ++E+ +
Sbjct: 276 QTRFLSVTLVFPSKGQQFLRVGLAVPILSTVAA-----LRKMVAEEGGV----PADEVIL 326

Query: 463 AEIQNHSIQR-FLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQT 521
           AE+     QR F D+    L+TI + D++ A++ P    + +F      L      AA  
Sbjct: 327 AELYPSGFQRSFFDE--EDLNTIAEGDNVYAFQAPPSPGQGIFSAHASALPVSPRLAACE 384

Query: 522 TSQWK-AYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVD 580
             ++  +  T     I   +++ SG+  S   R   PFL +E    + +    S+++ V 
Sbjct: 385 GQRFPLSLHTENKVLILFCNLVGSGQQAS---RFGPPFLIREDRAISWAQLQQSILSKV- 440

Query: 581 PSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTI--------- 631
                       + K +AS     +L    +++V  S  C  LS +  + +         
Sbjct: 441 ----------RYLMKSEASVQSLGSL--FSIRVVGLSLACSYLSPKDSRPLCHWAVDRAL 488

Query: 632 --RIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTE-PLSLYTCLEA 688
             R P     + + V+W     E+      E       +    ++A  +   +L  C + 
Sbjct: 489 HSRRPGGPPHVKLAVEWDSSAKERLFGSLQEERARDADSVWRQQQAHQQHSCTLDECFQF 548

Query: 689 FLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNF 748
           + +EE L  +D W CP CK  +Q   KL LW LP++L+IHLKRF      ++KL T V F
Sbjct: 549 YTKEEQLAQDDAWKCPHCKVLQQGMVKLSLWTLPDILIIHLKRFCQVGERRNKLSTLVKF 608

Query: 749 PIHDFNLTKYVANKNSSRRQ----------------------LYELYALTNHYGGMGSGH 786
           P+   N++ +VA +++S                         LY+LYA+ NH+G +  GH
Sbjct: 609 PLSGLNMSPHVAQRSTSPNPGPGPWSPWKQPACLPTAYPLDFLYDLYAVCNHHGSLQGGH 668

Query: 787 YTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           YTA+ +   + +WY++DDS + P+ ED+V +  AY+LFY++
Sbjct: 669 YTAYCRNSLDGQWYSYDDSTVEPLREDEVSTRGAYILFYQK 709


>gi|383866029|ref|XP_003708474.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 31-like [Megachile
           rotundata]
          Length = 935

 Score =  201 bits (510), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 187/698 (26%), Positives = 301/698 (43%), Gaps = 154/698 (22%)

Query: 241 HSSEISTSPNLASARDSDNTLGSSGVTTRGASV-----------GLTGLLNLGNTCFMNS 289
           H S +++  +  S RD    LGSS    R               G+ GL N GNTCFMN+
Sbjct: 131 HMSNVASQGHKTSHRDD---LGSSAGDIRVPPPRPAHIPPDRVPGVIGLRNHGNTCFMNA 187

Query: 290 --------------------------------------------------AIQCLVHTPE 299
                                                             AI    + PE
Sbjct: 188 VLQCLSHTDILAEYFVLDQYKVDLSRRNKLNSKKYGTKGEITEQLALLLKAIWSCQYDPE 247

Query: 300 FARYFR---EDYRREINWQNPLGMVELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEE 356
            +  F+   + Y  +          E L +LLD +HEDLN+   K Y   K++ GRPD+ 
Sbjct: 248 MSTAFKSVVDKYGSQYRGNLQHDAQEFLLWLLDKVHEDLNQATKKKYKIIKNSFGRPDDI 307

Query: 357 VADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPL-QATTTRTM 415
           VA E  ANH+  N+S +  V Q Q++S+L CP C++ S TFDPF+ +S+P+ Q      +
Sbjct: 308 VAAETLANHVRCNNSFVHAVFQAQFRSSLTCPRCHRQSNTFDPFLCVSVPVPQNHRQMNL 367

Query: 416 TVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLD 475
            V V  +          V+V +    R+L ++L +   + ++  L + EI +    R   
Sbjct: 368 FVNVLYTSQQPRQVKIGVSVNQAANVRELREILASDTGIDENHML-LTEIHDEGFHRTFS 426

Query: 476 DPLISLSTIKDDDHLAAYRVPKLVKKA----VFLQLIHRLQEQEPGAAQTTSQWKAYGTP 531
           D    LS I ++D L    +P+L + A    + L  I+ L + +          + +G+P
Sbjct: 427 D-CQPLSVITENDPLYCIELPQLKEPAEQAYILLVWINVLAKGDLR--------QRFGSP 477

Query: 532 LVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSM------VTTVDPSGEA 585
               +SR         +++ Q +    LK+   + AD    SS       +   DP    
Sbjct: 478 YTMQVSR---------ETSYQDLQKLLLKEMHAVLADDVLTSSQSPGLFNIRVADP---- 524

Query: 586 HSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIP---SSSTSIVV 642
              +++ +  E       V  P    Q+     +C D S  G + +++      +T   +
Sbjct: 525 ---AATPVQDEHPCIDPCVEHPLYTEQIEQALALCADDS--GPQHVKLILEWDEATKCNI 579

Query: 643 YVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWY 702
             D S ++ E  +   L+   E+   G VT         L  C + + R E L  ED W+
Sbjct: 580 IQDDSDQIEEHASVKQLKTNSEL--GGAVT---------LEECFDLYTRAEILGAEDAWH 628

Query: 703 CPQCKERRQASKKLDLWRLPEVLVIHLKRF---SYSRSMKHKLETFVNFPIHDFNLTKYV 759
           CP C ++++  KKL LW LP++LVIHLKRF   S  RS   KL   V+FP++ F++T ++
Sbjct: 629 CPYCNKKQEVVKKLGLWSLPDILVIHLKRFRQQSKQRSTS-KLTMLVDFPLYGFDMTPHL 687

Query: 760 AN---------------------KNSSRRQ--------LYELYALTNHYG-GMGSGHYTA 789
           A+                     K   R+Q        +Y+LYA+ NH+G  +  GHYTA
Sbjct: 688 AHNGVQTHNSVSSLGGLGWSPWKKPRPRQQNIPKYDENVYDLYAICNHHGQDLQGGHYTA 747

Query: 790 HIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             +   + +WY FDD+ +  +N+ ++ + AAY+LFY+R
Sbjct: 748 FCRNPYDTQWYCFDDTRVEAVNDTNLITNAAYMLFYQR 785


>gi|402592599|gb|EJW86527.1| ubiquitin carboxyl-terminal hydrolase, partial [Wuchereria
           bancrofti]
          Length = 524

 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 155/539 (28%), Positives = 239/539 (44%), Gaps = 69/539 (12%)

Query: 322 ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQY 381
           E L+ LLD LHEDLN++++KP+I+  D+DGRPD  VA E W  H+ R+ SIIVD+  GQ 
Sbjct: 20  EFLSILLDLLHEDLNQIENKPFIELNDSDGRPDSIVAKEAWDAHLKRDKSIIVDLFTGQL 79

Query: 382 KSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRC 441
           +STL C  CN +S  FD F  L LP+       ++V V   DG  +P  Y   +      
Sbjct: 80  RSTLTCLNCNAISCRFDAFTCLQLPIPIDHLLLISVVVVKRDGQ-IPIRYAFRLSCDTTI 138

Query: 442 RDLIQVLGNICSLK----QSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPK 497
                 L N   L     Q   L  A      +   +DD   S++   +D  L A+ +P 
Sbjct: 139 GMFKMKLANASGLLPNSFQILCLNRAGQMMQGVSESVDDDNSSINVYPNDALLYAFELPA 198

Query: 498 --------LVKKAVFLQLIHRLQEQEP---GAAQTTSQWKAYGTPLVSSISRDDVISSGK 546
                    V     +    ++Q  +    GA +  +  + +G PL+   +     +  K
Sbjct: 199 EDQSNSECFVAAPTVIAAHRKMQYNDSYLLGATRGCTA-RVFGVPLILRFTPGKT-TGNK 256

Query: 547 IQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTL 606
           +   V   +S FLK  S                  +G+      +N A + A   +    
Sbjct: 257 LYEEVWLHVSRFLKNGS------------------AGKQQRTREANRAIDAAEDIRN--- 295

Query: 607 PNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIV--------------VYVDWSQKLLE 652
              P  L      C  LS E       P+     V              V +DW    L 
Sbjct: 296 -GYPFDLC-----CVKLSFEWCSKCPWPAFCRGCVILSNDEIIEDNLMAVAIDWKPTALY 349

Query: 653 KYNTHFLENLLEVFKNGPVTK--KARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERR 710
               H +E L     +G V +  +    P SL +CL  F++ E L  E M  C  C ++ 
Sbjct: 350 LRYQHSVELLCR--DDGSVLQAWEVHYRPCSLVSCLNDFMQAERLDDEIM--CKPCGKKC 405

Query: 711 QASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLET--FVNFPIHDFNLTKYVANKNSSRRQ 768
             +K L +WRLP++L+IH KRF   +S +  +++   V+FP+ + +L +++ + +     
Sbjct: 406 PTTKALAIWRLPKILIIHFKRFVCVKSERRWMKSCKVVDFPLENLDLREWLRDPDVKTST 465

Query: 769 LYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            Y  +A+ NHYG M SGHY A+ K  + N+W++F+DS    + E  V   +AY+LFY R
Sbjct: 466 KYSCFAIANHYGAMASGHYVAYAK--NNNQWFSFNDSRCQAVKEPHVDKKSAYLLFYER 522


>gi|389745737|gb|EIM86918.1| cysteine proteinase [Stereum hirsutum FP-91666 SS1]
          Length = 1356

 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 178/614 (28%), Positives = 262/614 (42%), Gaps = 118/614 (19%)

Query: 41  IDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGP-TLARKVISS 99
           +DNS LVN        +  ++  + + G D    PQ+ W+ L +WYG     L R+VI  
Sbjct: 133 VDNSSLVN--------SNGDLSVSTVSGIDVEYFPQDAWDLLVTWYGQPQYVLPRRVIPR 184

Query: 100 GLSQTELAVEVYPLRLQLLVM-------PRGECSTIRISKKETIGELHRRACSIFYLNLE 152
           G+S+ E AVE++P R ++  +            ++  +  + +  +L         L  +
Sbjct: 185 GMSK-EAAVELFPPRFRVYRLSDDISNFAPASTNSPELYSESSEAQLVEHLLPSLALTAD 243

Query: 153 -----QICIWDY----------YGHRKHA-----LMNDMDRTLDDANIQMDQDILVEVLD 192
                Q  +W               RK       L+   D+TL DA I  +   +VE   
Sbjct: 244 PSTSAQYRVWKVQLSEPEDGSEIPKRKFVELGAELVEPSDKTLSDALIDSEHSFVVEFKR 303

Query: 193 NVNG-TNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNL 251
             +   +   +   +G     +SS+ + P    L    G+      SR  S   S  P+ 
Sbjct: 304 YGSWIVDVPPAKALHGNEADTSSSIYIPPPP--LFGQNGFFDRMEQSRPPSLNASGVPS- 360

Query: 252 ASARDSDNTLGSSGVTTR-----GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE 306
                S   L  +G T       G + G  GL N+GNTCFMNSA+QCL H  E   YF  
Sbjct: 361 -----SSALLKPAGFTPNLRKKPGQTPGTLGLGNMGNTCFMNSALQCLAHLQELTEYFLY 415

Query: 307 D-YRREINWQNPLGM--------------------------------------------- 320
             ++ E+N  NPLGM                                             
Sbjct: 416 GVFKDELNPDNPLGMHGEIAESFGALLHRIWSPSSASTSYSPREFKSALQRFAPQFSGYQ 475

Query: 321 ----VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEV---ADEYWANHIARNDSII 373
                EL+AFLLDGLHEDLNRV  KPY++  D +G  D+EV   A E W  ++ RNDS+I
Sbjct: 476 QHDSQELVAFLLDGLHEDLNRVLKKPYVEKPDWEGGGDKEVMALARESWEGYMKRNDSVI 535

Query: 374 VDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTV 433
           VD+ QGQYKSTLVCP C KVS+TFDPFMYL+LPL      T TV     D         V
Sbjct: 536 VDLFQGQYKSTLVCPECEKVSITFDPFMYLTLPLPVQKKWTHTVRYIPWDLKKPHVRVPV 595

Query: 434 TVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAY 493
            + +    +DL  ++G      + + L   E+  H   R L D  +    + D+D +A +
Sbjct: 596 EINRDASFKDLRHLIGRWMG-SEPDNLLSVELFAHKFYRTLGD-AVPCGDVSDNDDIAFF 653

Query: 494 RVPKLVKKAVFLQ---------LIHRLQEQEPGAAQTTSQWKA---YGTPLVSSISRDDV 541
            +P   ++A             LI  L    P  ++++  +     +G P V +ISR+D 
Sbjct: 654 ELPCHAQQARTYASKKTDSDPFLIPVLMCDAPSTSRSSYNFNRNNLFGQPFVVAISREDA 713

Query: 542 ISSGKIQSTVQRML 555
            S  +++  V + L
Sbjct: 714 RSVKRMREIVTQQL 727



 Score =  129 bits (325), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 68/169 (40%), Positives = 103/169 (60%), Gaps = 21/169 (12%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            +SL  CL+ F REE L  ED WYCP+CK+ +QA+KK DLWR+P+VLV+HLKRFS SR+++
Sbjct: 942  ISLQDCLDEFTREEKLGEEDPWYCPRCKKHQQATKKFDLWRVPDVLVVHLKRFSNSRALR 1001

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRR---------------------QLYELYALTNH 778
             K+E FV+FP++  +LT+    +   ++                      +Y+L+A+  H
Sbjct: 1002 DKIEAFVDFPVNGLDLTEMAEERRVGKKLAEDGSLADPSALGLEDLDEPLVYDLFAVDEH 1061

Query: 779  YGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             GG+G GHY A+ +      WY+FDDS+++        +  AY+LFY+R
Sbjct: 1062 LGGLGGGHYRAYAQNHVSGDWYHFDDSYVTRAEPHAAVNPNAYLLFYKR 1110


>gi|242015222|ref|XP_002428271.1| ubiquitin specific protease, putative [Pediculus humanus corporis]
 gi|212512845|gb|EEB15533.1| ubiquitin specific protease, putative [Pediculus humanus corporis]
          Length = 954

 Score =  200 bits (508), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 167/644 (25%), Positives = 283/644 (43%), Gaps = 129/644 (20%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPL--------GMV--- 321
           G+ GL N GNTCF+N+ +QCL HT   A YF    Y+ ++  +N L        G V   
Sbjct: 171 GVIGLRNHGNTCFINAILQCLTHTDCLAEYFVMNQYKADLTRRNKLTSKKYGTKGEVTEQ 230

Query: 322 -----------------------------------------ELLAFLLDGLHEDLNRVKH 340
                                                    E L +LLD +HEDLN    
Sbjct: 231 LALLLKSVWHCQYNPDISNQFKVIVDKYGTQYCGNNQHDAQEFLIWLLDKVHEDLNTATK 290

Query: 341 KPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPF 400
           K Y  +K +  RPDEEVA E  ANH+  N+S +  V Q Q++S+L C  C + S TFDPF
Sbjct: 291 KNYKANKSSFDRPDEEVAKETLANHVRCNNSFVHAVFQAQFRSSLTCLNCQRQSNTFDPF 350

Query: 401 MYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEEL 460
           + +S+P+     R + VTV             +++ ++    +L + L +  S+ +S  L
Sbjct: 351 LCVSVPMPHNQKRPIYVTVLYLSQQPRQVKLGLSLNENSTVSELREQLSSDTSIPESCML 410

Query: 461 KVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKL------VKKAVFLQLIHRLQEQ 514
            + +I +   QR     L  +S IK+ D +     P+L      ++K + L  ++ L   
Sbjct: 411 -LTQIDDLGFQRTFSGQL-PISEIKETDPVYCIETPQLKDASEEMEKYILLCWVNVLTMD 468

Query: 515 EPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSS 574
           +  +         +G+P    + R  + S   IQ  + + ++  L  E ++  D   P  
Sbjct: 469 DHSS--------RFGSPYTMQLCR--LTSYKDIQKLILKEMNTILHDE-ILTTDQDIPLF 517

Query: 575 MVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIP 634
            +  VD  G          A+  AS         L ++ +D++    D            
Sbjct: 518 RIKIVDGVG----------AESAASFLDPTVDHPLYMEEIDQALALLDED---------- 557

Query: 635 SSSTSIVVYVDWSQKLLEKY---NTHFLENLLEV----FKNGPVTKKARTEPLSLYTCLE 687
           S  + + + ++W     E     ++ F+E    V    F++G        +  +L  C +
Sbjct: 558 SGPSHLKLVLEWDLAAKESTIADDSDFIEEHSSVKQLLFQSG------TGDSATLEECFD 611

Query: 688 AFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF---SYSRSMKHKLET 744
            + + E L  +D W+CP C  +++  KKL LW LP++LVIHLKRF   S       K+  
Sbjct: 612 LYTKAEVLGADDKWHCPFCNRKQEVIKKLGLWSLPDILVIHLKRFRQQSCKNRSATKVMM 671

Query: 745 FVNFPIHDFNLTKYVAN--------------------KNSSRRQLYELYALTNHYG-GMG 783
            ++FP++ F++  ++                        S    +Y+LYA+ NH+G  + 
Sbjct: 672 LIDFPLYGFDMNAHLVGPQRESNNSLTLWSPWRKPKRTTSYDDNVYDLYAICNHHGQDLQ 731

Query: 784 SGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            GHYTA+ +   + +WY+FDD+ + P+ E ++ + +AY+LFY++
Sbjct: 732 GGHYTAYCRNPFDCQWYSFDDTKVEPVPETNLITNSAYILFYQK 775


>gi|427793919|gb|JAA62411.1| Putative ubiquitin c-terminal hydrolase, partial [Rhipicephalus
           pulchellus]
          Length = 1519

 Score =  200 bits (508), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 164/531 (30%), Positives = 226/531 (42%), Gaps = 148/531 (27%)

Query: 36  KRPSGIDNSDLVNDATAEDP---GAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTL 92
           +RP  IDNS LV   + +     G G  +V  L  GRD+  +P+ +W  L  WYGG P L
Sbjct: 437 QRPPSIDNSGLVVPNSVKAAVLTGEGGRLVRPLTRGRDFEAVPEAIWRALFQWYGGSPAL 496

Query: 93  ARKVISSGLSQTELAVEVYP--LRL----QLLVMPR------------------------ 122
            R+ I SG S  EL  E+YP  LRL    Q    PR                        
Sbjct: 497 PRQCIRSGGSTPEL--ELYPPCLRLWRHQQAQCGPRQPNSSSWTSVVGSVASAYVGGVAP 554

Query: 123 GECST---------IRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDR 173
           G+ ST            S+  T+ ++    C+   L  E   +W          + +   
Sbjct: 555 GQPSTSPKRYLAYQASFSRTSTLRQVFDFLCTRLRLRPEDTRLWQLQDENNLTPLEEEGF 614

Query: 174 TLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSA 233
           TL+   I+  + IL+EV +           +D  + E+ +  +                 
Sbjct: 615 TLEQLGIEDGEQILIEVRN-----------KDQTWPEEMSCII----------------N 647

Query: 234 SKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQC 293
           SK   +N                        G T +GA    TGL NLGNTCFMN+A+QC
Sbjct: 648 SKVDQKNQ-----------------------GPTEKGA----TGLNNLGNTCFMNAALQC 680

Query: 294 LVHTPEFARYF-REDYRREINWQNPLGMV------------------------------- 321
           + +T    +YF  E +  E+N  NPLGM                                
Sbjct: 681 VSNTRPLTQYFINEKHLYELNRMNPLGMKGHIAKRYGDLVHDLWSGTSKTVAPLKLRWTI 740

Query: 322 ----------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANH 365
                           ELLAFLLDGLHEDLNRV+ KPY++ KD+ GRPD+EVA E W NH
Sbjct: 741 GKYAPRFNGFQQHDSQELLAFLLDGLHEDLNRVQEKPYVELKDSAGRPDDEVAREAWENH 800

Query: 366 IARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGS 425
             RN S++VD+  GQ +ST+ C VC   SV FDPF +LSLPL   +   + V V   DGS
Sbjct: 801 ALRNRSVVVDLFHGQLQSTVTCKVCGHTSVRFDPFNFLSLPLPMESCVHVEVVVVRLDGS 860

Query: 426 ALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDD 476
            +P  Y + +    R   + Q L  +C L   ++L +AE+    ++  L D
Sbjct: 861 -MPIRYGLQLNPDERYLSVKQQLSPLCGLA-PQQLLLAEVWGAVVRALLPD 909



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 73/126 (57%), Gaps = 6/126 (4%)

Query: 638  TSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPV---TKKARTEPLSLYTCLEAFLREEP 694
            +S+ + +DW    L   +  +  +   V+ + P    T++ + EP+S++ CL AF +EE 
Sbjct: 1190 SSLYLSIDWDPTAL---HLRYQASQERVYVDHPSVERTRQQKVEPISVHDCLAAFTKEEQ 1246

Query: 695  LVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFN 754
            L   + +YC +CK+ + A+KKL ++RLP +L+IHLKRF        K +  V FP  DF+
Sbjct: 1247 LGDREKYYCSRCKQHQLATKKLQIYRLPPILIIHLKRFQLLNGKWVKSQKIVRFPFKDFD 1306

Query: 755  LTKYVA 760
             T Y++
Sbjct: 1307 PTDYLS 1312



 Score = 53.9 bits (128), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 770  YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            Y++YAL  H G +G GHY ++      N+WY ++DS    +  D + S +AY+LFY R
Sbjct: 1426 YQMYALACHTGILGGGHYVSY-ACNPNNKWYCYNDSSCKEVQLDQIDSDSAYMLFYER 1482


>gi|123314452|ref|NP_776115.2| ubiquitin carboxyl-terminal hydrolase 43 [Mus musculus]
 gi|115311887|sp|Q8BUM9.2|UBP43_MOUSE RecName: Full=Ubiquitin carboxyl-terminal hydrolase 43; AltName:
           Full=Deubiquitinating enzyme 43; AltName: Full=Ubiquitin
           thioesterase 43; AltName:
           Full=Ubiquitin-specific-processing protease 43
          Length = 1132

 Score =  199 bits (507), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 177/684 (25%), Positives = 292/684 (42%), Gaps = 148/684 (21%)

Query: 248 SPNLASARDSDNTLGSSGVTTRGASV---GLTGLLNLGNTCFMNSAIQCLV--------- 295
           +P  A +   D   GS    + G      G  GL N GNTCFMN+ +QCL          
Sbjct: 70  APASAGSPGPDRPPGSQPQISSGDGARPPGAQGLKNHGNTCFMNAVVQCLSNTDLLAEFL 129

Query: 296 -----------------------------HTPEFARYFR---EDYRREINWQNPLGMVEL 323
                                        +TP+ +  F+     Y  +    +    +E 
Sbjct: 130 ALGRYRAAPGRAEVTEQLAALVRALWTREYTPQLSAEFKNAVSKYGSQFQGNSQHDALEF 189

Query: 324 LAFLLDGLHEDLNRVKH-------KPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDV 376
           L +LLD +HEDL    H        P +     D RP         A   +   S +   
Sbjct: 190 LLWLLDRVHEDLEGSAHGLVSEQLPPEVSKISEDLRPS--------AAPTSLGPSFVQSH 241

Query: 377 CQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVT-VFTSD-------GSALP 428
            Q QY+S+L CP C K S TFDPF+ +SLP+    TR ++VT VF S        G A+P
Sbjct: 242 FQAQYRSSLTCPHCLKQSNTFDPFLCVSLPIPLRQTRFLSVTLVFPSKSQRFLRVGLAVP 301

Query: 429 STYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTIKDD 487
              TV        R ++   G +     +EE+ + E+  +  QR F D+    L+TI + 
Sbjct: 302 ILSTVAA-----LRKMVAEEGGV----PAEEVILVELYPNGFQRSFFDE--EDLNTIAEG 350

Query: 488 DHLAAYRVPK------LVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSS----IS 537
           D++ A++VP       L      L +  RL  ++          + +  PL S       
Sbjct: 351 DNVYAFQVPPSPGLGTLSAHPSGLSVSPRLPVRDS---------QRFSGPLHSENRVVFL 401

Query: 538 RDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKED 597
             +++ SG+  S   R   PFL +E    + +     +++ V             + + +
Sbjct: 402 FCNLVGSGQQAS---RFGPPFLIREDRTISWAQLQQCILSKV-----------RCLMRSE 447

Query: 598 ASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTI-----------RIPSSSTSIVVYVDW 646
            S+    TL    +++V  S  C  LS + ++ +           R P     + + V+W
Sbjct: 448 VSAQDLGTL--FSIRVVGLSLACSYLSPKDNRPLCHWAVDRALHLRRPGGPPHVKLAVEW 505

Query: 647 SQKLLEKYNTHFLENLLEVFKNGPVTKKARTEP-LSLYTCLEAFLREEPLVPEDMWYCPQ 705
              + E+      E  ++   +    ++A  +P  +L  C +++ +EE L  +D W CP 
Sbjct: 506 DSSVTERLFGSLQEERVQDADSVWRQQQAHQQPSCTLDECFQSYTKEEQLAQDDAWKCPH 565

Query: 706 CKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSS 765
           C+  +Q   KL LW LP++L+IHLKRF      ++KL T V FP+   N+  +VA ++++
Sbjct: 566 CQVLQQGVVKLSLWTLPDILIIHLKRFCQVGERRNKLSTLVKFPLSGLNMAPHVARRSTN 625

Query: 766 RRQ----------------------LYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFD 803
            +                       LY+LYA+ NH+G +  GHYTA+ +   + +WY++D
Sbjct: 626 SKAGPGPWSSWKQPICLPTTYPLDFLYDLYAVCNHHGSLQGGHYTAYCRNSLDGQWYSYD 685

Query: 804 DSHISPINEDDVKSAAAYVLFYRR 827
           DS +  + ED+V +  AY+LFY++
Sbjct: 686 DSTVEALREDEVNTRGAYILFYQK 709


>gi|427788383|gb|JAA59643.1| Putative ubiquitin c-terminal hydrolase [Rhipicephalus pulchellus]
          Length = 1611

 Score =  199 bits (507), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 164/531 (30%), Positives = 226/531 (42%), Gaps = 148/531 (27%)

Query: 36   KRPSGIDNSDLVNDATAEDP---GAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTL 92
            +RP  IDNS LV   + +     G G  +V  L  GRD+  +P+ +W  L  WYGG P L
Sbjct: 529  QRPPSIDNSGLVVPNSVKAAVLTGEGGRLVRPLTRGRDFEAVPEAIWRALFQWYGGSPAL 588

Query: 93   ARKVISSGLSQTELAVEVYP--LRL----QLLVMPR------------------------ 122
             R+ I SG S  EL  E+YP  LRL    Q    PR                        
Sbjct: 589  PRQCIRSGGSTPEL--ELYPPCLRLWRHQQAQCGPRQPNSSSWTSVVGSVASAYVGGVAP 646

Query: 123  GECST---------IRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDR 173
            G+ ST            S+  T+ ++    C+   L  E   +W          + +   
Sbjct: 647  GQPSTSPKRYLAYQASFSRTSTLRQVFDFLCTRLRLRPEDTRLWQLQDENNLTPLEEEGF 706

Query: 174  TLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSA 233
            TL+   I+  + IL+EV +           +D  + E+ +  +                 
Sbjct: 707  TLEQLGIEDGEQILIEVRN-----------KDQTWPEEMSCII----------------N 739

Query: 234  SKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQC 293
            SK   +N                        G T +GA    TGL NLGNTCFMN+A+QC
Sbjct: 740  SKVDQKNQ-----------------------GPTEKGA----TGLNNLGNTCFMNAALQC 772

Query: 294  LVHTPEFARYF-REDYRREINWQNPLGMV------------------------------- 321
            + +T    +YF  E +  E+N  NPLGM                                
Sbjct: 773  VSNTRPLTQYFINEKHLYELNRMNPLGMKGHIAKRYGDLVHDLWSGTSKTVAPLKLRWTI 832

Query: 322  ----------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANH 365
                            ELLAFLLDGLHEDLNRV+ KPY++ KD+ GRPD+EVA E W NH
Sbjct: 833  GKYAPRFNGFQQHDSQELLAFLLDGLHEDLNRVQEKPYVELKDSAGRPDDEVAREAWENH 892

Query: 366  IARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGS 425
              RN S++VD+  GQ +ST+ C VC   SV FDPF +LSLPL   +   + V V   DGS
Sbjct: 893  ALRNRSVVVDLFHGQLQSTVTCKVCGHTSVRFDPFNFLSLPLPMESCVHVEVVVVRLDGS 952

Query: 426  ALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDD 476
             +P  Y + +    R   + Q L  +C L   ++L +AE+    ++  L D
Sbjct: 953  -MPIRYGLQLNPDERYLSVKQQLSPLCGLA-PQQLLLAEVWGAVVRALLPD 1001



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 73/126 (57%), Gaps = 6/126 (4%)

Query: 638  TSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPV---TKKARTEPLSLYTCLEAFLREEP 694
            +S+ + +DW    L   +  +  +   V+ + P    T++ + EP+S++ CL AF +EE 
Sbjct: 1282 SSLYLSIDWDPTAL---HLRYQASQERVYVDHPSVERTRQQKVEPISVHDCLAAFTKEEQ 1338

Query: 695  LVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFN 754
            L   + +YC +CK+ + A+KKL ++RLP +L+IHLKRF        K +  V FP  DF+
Sbjct: 1339 LGDREKYYCSRCKQHQLATKKLQIYRLPPILIIHLKRFQLLNGKWVKSQKIVRFPFKDFD 1398

Query: 755  LTKYVA 760
             T Y++
Sbjct: 1399 PTDYLS 1404



 Score = 53.9 bits (128), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 770  YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            Y++YAL  H G +G GHY ++      N+WY ++DS    +  D + S +AY+LFY R
Sbjct: 1518 YQMYALACHTGILGGGHYVSY-ACNPNNKWYCYNDSSCKEVQLDQIDSDSAYMLFYER 1574


>gi|71020237|ref|XP_760349.1| hypothetical protein UM04202.1 [Ustilago maydis 521]
 gi|46099973|gb|EAK85206.1| hypothetical protein UM04202.1 [Ustilago maydis 521]
          Length = 1427

 Score =  199 bits (506), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 173/544 (31%), Positives = 253/544 (46%), Gaps = 103/544 (18%)

Query: 41  IDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGG-GPTLARKVISS 99
           IDNSDL++     D  +   +   + E  DY +LP+E W  L +WYG  GP  ARKVI  
Sbjct: 278 IDNSDLLD----PDSTSFVRLKSGINEHVDYEMLPEEGWKLLVAWYGSSGPAFARKVID- 332

Query: 100 GLSQTELAVEVYPLRLQLLVMPRGECST------IRISKKETIGELHRRACSIFYLNLEQ 153
           G    + +VE YP   +LL +   + +         +S   ++ EL  +A      NL Q
Sbjct: 333 GRCPGQESVEFYPPIFRLLRLVEDDSTQGSGVPPFSLSVSTSLAEL--KAMVKMAFNLGQ 390

Query: 154 ICIWDYYGHRKHALMNDMDRTLDDANI---QMDQD---ILVEVLDNVNGTNCKSSIQDNG 207
           +   D    R +      D+ L    +   ++D++   I+    D  +      S++  G
Sbjct: 391 VADVDI---RLYFFPEPSDQELQSGLVGFARLDEEGVSIIDAREDKPDSYQPNVSLRSIG 447

Query: 208 FAEKKASSVLVE------------PSKSSLSIAGGWSASKG----TSRNHSSEISTSPNL 251
             E + + +LVE            P++++ S   G  A +G      +  SS I+++   
Sbjct: 448 IEEIEVN-LLVEIRQSGRWQTDPAPAEATASSVKGVFAQQGDFFSNLQQSSSVIASASGS 506

Query: 252 ASARDSDNTLG----SSGVTTR--GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFR 305
           A++  S    G    S   T R  G S GL GL NLGNTCFMNSA+QCL +T E  +YF 
Sbjct: 507 ATSVPSAEAQGRVTRSQTATDRSMGRSRGLRGLNNLGNTCFMNSALQCLSNTYELQQYFV 566

Query: 306 ED-YRREINWQNPLGM-------------------------------------------- 320
              Y+ E+N  NPLGM                                            
Sbjct: 567 SGAYKEELNTDNPLGMGGAIAEAFGNLITNIWNGQGGSFWPREFKFALSRFAPQFSGYAQ 626

Query: 321 ---VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEV---ADEYWANHIARNDSIIV 374
               ELLAFLLDGLHEDLNR+  KPYI++ D +G  ++++   A   W  + ARNDS+IV
Sbjct: 627 HDSQELLAFLLDGLHEDLNRILKKPYIEAPDWEGGDEKDLVAFAKRQWDIYKARNDSVIV 686

Query: 375 DVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVT 434
           D+ QGQY+STLVCP C+KVS+ FDPFMYL+LP+         V     D       + V 
Sbjct: 687 DLFQGQYRSTLVCPDCSKVSIKFDPFMYLTLPIPNRKMWRGQVYFVPLDAGQSMHKFQVL 746

Query: 435 VPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDD--PLISLSTIKDDDHLAA 492
           +P       L Q +     + +++ L   E+ +H I +++DD  PLI    +KD D +  
Sbjct: 747 LPAGSTVGKLRQKVAAQFGI-ETKRLVCGEVWHHRIYKWIDDYEPLID---VKDGDFVYF 802

Query: 493 YRVP 496
           + VP
Sbjct: 803 WEVP 806



 Score =  167 bits (424), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 86/218 (39%), Positives = 119/218 (54%), Gaps = 41/218 (18%)

Query: 647  SQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQC 706
            S +L  +Y     E++ +    GP    ART+ LS+  C++ F REE L  +D WYCP C
Sbjct: 1104 SAQLWGEYEETVDESIRQRENAGP----ARTKTLSIEDCMDEFTREEQLGEDDPWYCPSC 1159

Query: 707  KERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSR 766
            KE RQA+KK DLW+ P++LV+HLKRFS  R  + KL   V+FP+   +LT  V    + R
Sbjct: 1160 KEFRQATKKFDLWKAPDILVVHLKRFSAGRHSRDKLNMLVDFPLEGLDLTDRVEGTQALR 1219

Query: 767  ------------------------------------RQLYELYALTNHYGGMGSGHYTAH 790
                                                R +Y+LYA+ NH+GG+G GHYTA 
Sbjct: 1220 RVQEEAEKSGEELSESMLGSGILRPLEDNDDAVAVDRPIYDLYAVDNHFGGLGGGHYTAF 1279

Query: 791  IKLLDENRWYNFDDSHISPI-NEDDVKSAAAYVLFYRR 827
             K   + +WY FDDS + P+ N + VKS++AY+LFYRR
Sbjct: 1280 AKSPADGKWYEFDDSSVRPVANPEQVKSSSAYLLFYRR 1317


>gi|340716424|ref|XP_003396698.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 31-like [Bombus
           terrestris]
          Length = 928

 Score =  199 bits (506), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 199/760 (26%), Positives = 318/760 (41%), Gaps = 157/760 (20%)

Query: 174 TLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSA 233
           T D  N+Q  Q  +  +  N+   +   S  D    +K    V   PS         W  
Sbjct: 74  TKDRHNMQQHQQQVESMQQNIGRLHGSQSYPDRSGMKK----VFRRPS---------WRK 120

Query: 234 SKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASV-----------GLTGLLNLG 282
                  H S + T  +  S RD    LGSS    R               G+ GL N G
Sbjct: 121 FINKMVQHMSNVGTQNHKTSHRDD---LGSSAGDIRVPPPRPAHIPPDKVPGVIGLRNHG 177

Query: 283 NTCFMNS--------------------------------------------------AIQ 292
           NTCFMN+                                                  AI 
Sbjct: 178 NTCFMNAVLQCLSHTDILAEYFVLDQYKIDLSRRNKLNSKKYGTKGEITEQLALLLKAIW 237

Query: 293 CLVHTPEFARYFR---EDYRREINWQNPLGMVELLAFLLDGLHEDLNRVKHKPYIKSKDA 349
              + PE +  F+   + Y  +          E L +LLD +HEDLN+   K Y   K++
Sbjct: 238 SCQYDPEMSTAFKSVVDKYGSQYRGNLQHDAQEFLLWLLDKVHEDLNQATKKKYKIIKNS 297

Query: 350 DGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPL-Q 408
            GRPD+ VA E  ANH+  N+S +  V Q Q++S+L CP C++ S TFDPF+ +S+P+ Q
Sbjct: 298 FGRPDDIVAAETLANHVRCNNSFVHAVFQAQFRSSLTCPRCHRQSNTFDPFLCVSVPVPQ 357

Query: 409 ATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNH 468
                 + V V  +          V+V +    R+L ++L +   + ++  L + EI + 
Sbjct: 358 NHRQMNLFVNVLYTSQQPRQVKIGVSVNQMANVRELREILASDTGIDENHML-LTEIHDE 416

Query: 469 SIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKA----VFLQLIHRLQEQEPGAAQTTSQ 524
              R   D    LS I ++D L    +P+L + A    + L  I+ L + +         
Sbjct: 417 GFHRTFSD-CQPLSVITENDPLYCIELPQLKEPAEQAYILLVWINVLTKGDLR------- 468

Query: 525 WKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSM-VTTVDPSG 583
            + + +P    +SR+   S   +Q  + + +   L  + L  + S  P    +   DP  
Sbjct: 469 -QRFSSPYTMQVSRE--TSYEDLQKLLLKEMHSVLADDVLTSSQS--PGLFNIRVADP-- 521

Query: 584 EAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIP---SSSTSI 640
                +++ I  E       V  P    Q+     +C D S  G + +++      +T  
Sbjct: 522 -----AATPIQDEHPCIDPCVEHPLYTEQIEQALALCADDS--GPQHVKLILEWDEATKC 574

Query: 641 VVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
            +  D + ++ E  +   L+   E+   G VT         L  C + + R E L  ED 
Sbjct: 575 NIIQDDNDQIEEHASVKQLKTNSEL--GGAVT---------LEECFDLYTRAEILGAEDA 623

Query: 701 WYCPQCKERRQASKKLDLWRLPEVLVIHLKRF---SYSRSMKHKLETFVNFPIHDFNLTK 757
           W+CP C ++++  KKL LW LP++LVIHLKRF   S  RS   KL   V+FP++ F++T 
Sbjct: 624 WHCPYCNKKQEVVKKLGLWSLPDILVIHLKRFRQQSKQRSTS-KLTMLVDFPLYGFDMTP 682

Query: 758 YVAN---------------------KNSSRRQ--------LYELYALTNHYG-GMGSGHY 787
           ++A+                     K   R+Q        +Y+LYA+ NH+G  +  GHY
Sbjct: 683 HLAHNGVQTHNNVSSLGGLGWSPWKKPRPRQQNIPKYDENVYDLYAICNHHGQDLQGGHY 742

Query: 788 TAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           TA  +   + +WY FDD+ +  +N+ ++ + AAY+LFY+R
Sbjct: 743 TAFCRNPYDTQWYCFDDTRVEAVNDTNLITNAAYMLFYQR 782


>gi|336368311|gb|EGN96654.1| hypothetical protein SERLA73DRAFT_111301 [Serpula lacrymans var.
           lacrymans S7.3]
          Length = 1271

 Score =  199 bits (505), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 164/513 (31%), Positives = 238/513 (46%), Gaps = 87/513 (16%)

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG-GGPTLARKVISSGLSQTELAVEVYPLRLQLLV 119
           +V +LLEG D   +PQ  W+ L +WYG    +L R VI+ G+   E  +E+ P RL+ L+
Sbjct: 146 VVSSLLEGVDVEFVPQHAWDALVTWYGEPSHSLPRTVIARGILH-EPVLELRPPRLKALL 204

Query: 120 M-------PRGECST-IRISKKETIGELHR---RACSI---FYLNLEQICIWDYYGHRKH 165
           +       P G     + +S   ++ EL     +A SI       + ++   D+ G +  
Sbjct: 205 LQDTPSEKPIGPPHPYVTMSTTGSVKELSTALVKAVSIRTNAAYRIWKVEPGDFDGLQYP 264

Query: 166 A---------LMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSV 216
           A         L++D D++L+DA I+ D   ++E  +N N     S I  +  +   AS  
Sbjct: 265 AAKLAQDGAVLLDDNDQSLEDACIEPDDPFVIEFQENGNWIVDASRIPKSNASSSLASPN 324

Query: 217 LVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLT 276
            V P     S    + +  G     +    ++P L++   S   L SS    +    G  
Sbjct: 325 GVPPPL--FSSDDDFFSRLGNKLPSAQASQSTPTLSAPFQS---LKSSKKAVQDP--GTL 377

Query: 277 GLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM--------------- 320
           GL N+GNTCFMNSA+QCL H  E   YF    Y+ E+N  NPLGM               
Sbjct: 378 GLGNMGNTCFMNSALQCLAHLEELTDYFISGVYQDELNPDNPLGMHGAIAEAFGSLLQRI 437

Query: 321 ----------------------------------VELLAFLLDGLHEDLNRVKHKPYIKS 346
                                              EL+AFLLDGLHEDLNRV  KPY++ 
Sbjct: 438 WATNSPSTSYSPREFKQQLQRFAPQFSGYQQHDSQELVAFLLDGLHEDLNRVLKKPYVEK 497

Query: 347 KDADGRPDEEVAD---EYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYL 403
            D +G  D E+A    + W  ++ RNDS+IVD+ QGQY+STLVCP C KVS+TFDPFMYL
Sbjct: 498 PDWEGGGDLELAQLAQKSWEGYMQRNDSVIVDLFQGQYQSTLVCPECQKVSITFDPFMYL 557

Query: 404 SLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVA 463
           +LPL        TV     D S       V + +    ++L  +LG     K  E L   
Sbjct: 558 TLPLPVQKKWRHTVFYVPWDISKPHVRVPVEIGRDASFKELRILLGRWMGTK-PENLLTL 616

Query: 464 EIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVP 496
           EI ++   + LDD ++    + D+D +  + +P
Sbjct: 617 EIFSNRFYKNLDDSIL-CGEMSDNDVIVCFELP 648



 Score =  134 bits (336), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 71/167 (42%), Positives = 105/167 (62%), Gaps = 19/167 (11%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            +SL  CL  F +EE L  +D+WYCPQCK+ +QA+KK DLW+ P++LV+HLKRFS SR+++
Sbjct: 908  ISLNDCLAEFTKEEQLGEDDLWYCPQCKKHQQATKKFDLWKAPDILVVHLKRFSNSRALR 967

Query: 740  HKLETFVNFPIHDFNLTKYV---------ANKNSSRRQL----------YELYALTNHYG 780
             K++TFV+FPI   +L   +         A      R+L          Y+L+A+  H G
Sbjct: 968  DKIDTFVDFPIQGLHLEHMIGERKIATKLAESGVDTRELGLDDLDEPLTYDLFAVDEHLG 1027

Query: 781  GMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            G+G GHY A+      ++WY+FDDS+++P    +  +A AY+LFYRR
Sbjct: 1028 GLGGGHYRAYALNHITDKWYHFDDSYVTPARSTEAVNANAYLLFYRR 1074


>gi|410928885|ref|XP_003977830.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 32-like [Takifugu
           rubripes]
          Length = 1556

 Score =  198 bits (503), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 164/543 (30%), Positives = 232/543 (42%), Gaps = 141/543 (25%)

Query: 34  ASKRPSGIDNSDLVNDATAEDP-----GAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGG 88
           A++RP  IDN  LVN    + P     G   +    L+ GRD+  +P+ VW  L+ WYG 
Sbjct: 516 AAQRPGAIDNQSLVNTDPMKAPTLTLEGGRLKRSLQLVPGRDFETVPEPVWRALYHWYGA 575

Query: 89  GPTLARKVI-SSGLSQTELAVEVYPLRLQLL------------------VMPRGECSTIR 129
             +L R VI  S  SQ EL  E++P  L  L                   +P       R
Sbjct: 576 NLSLPRPVILDSKTSQAEL--ELFPRYLLFLRQQPATRSPQSNVWVNMGSVPSPNAPLKR 633

Query: 130 I-------SKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQM 182
           +       S+ +TI ++H        +  E + +W Y       L++D D T        
Sbjct: 634 VLAYTGCFSRIDTIKDIHLYLSQRLRIKEEDMRLWLYNSENYLTLLDDEDHT-------- 685

Query: 183 DQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHS 242
                   L+N+        IQD          +++E     +S     S    +S+   
Sbjct: 686 --------LENLK-------IQDE-------QQLVIEVRNKDMSWPEEMSFIANSSKMDR 723

Query: 243 SEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFAR 302
            ++ T                          G TGL NLGNTCFMNS+IQC+ +T     
Sbjct: 724 HKVPTEK------------------------GATGLSNLGNTCFMNSSIQCVSNTKALTD 759

Query: 303 YFRED-YRREINWQNPLGM----------------------------------------- 320
           YF    +  E+N  NP+GM                                         
Sbjct: 760 YFLSGRHLYELNRTNPIGMRGHMAKCYGDLVMELWSGTQKSVAPLKLRWTIAKYAPRFNG 819

Query: 321 ------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIV 374
                  ELLAFLLDGLHEDLNRV  KPY++ KD++GRPD EVA E W NH+ RN SI+V
Sbjct: 820 FQQQDSQELLAFLLDGLHEDLNRVHEKPYVELKDSNGRPDWEVASEAWENHLRRNRSIVV 879

Query: 375 DVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVT 434
           D+  GQ KS + C  C  +S  FDPF +LSLPL   +   + +TV   +GS  P  Y + 
Sbjct: 880 DLFHGQLKSQVKCKTCGHISARFDPFNFLSLPLPMDSYMHLEITVIKLEGST-PVRYGLR 938

Query: 435 VPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF-LDDPLISLSTIKDDDHLAAY 493
           +    +   L + L  +CSLK  E++ +AE+   +I+ F LD+  + LS    +  L A+
Sbjct: 939 LNMDEKYMGLKKQLSELCSLK-PEQILLAEVHTSNIKNFPLDNQKVRLSA---NGFLCAF 994

Query: 494 RVP 496
            VP
Sbjct: 995 EVP 997



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/123 (38%), Positives = 77/123 (62%), Gaps = 2/123 (1%)

Query: 642  VYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
            + VDW    L  +Y T   E ++E   +   +++A+ EP+SL +CL+AF  EE L  +++
Sbjct: 1192 IAVDWDPTALHLRYQTS-QERIVEEHCSVEQSRRAQAEPISLDSCLKAFTSEEELGEDEL 1250

Query: 701  WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
            +YC +CK  R A+KKLDLWRLP +L++HLKRF +      K +  V FP  +F+ + ++A
Sbjct: 1251 YYCSKCKTHRLATKKLDLWRLPPILIVHLKRFQFVNGRWIKSQKIVKFPRENFDPSAFLA 1310

Query: 761  NKN 763
             ++
Sbjct: 1311 PRD 1313



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 38/59 (64%), Gaps = 1/59 (1%)

Query: 769  LYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            +Y LYA++ H G MG GHY  + K   + +WY ++DS    ++ +++ + +AY+LFY +
Sbjct: 1461 VYNLYAISCHSGIMGGGHYVTYAKN-PKKKWYCYNDSSCKEVHSEEIDTDSAYILFYEQ 1518


>gi|402898759|ref|XP_003912384.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 43 [Papio anubis]
          Length = 1123

 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 169/657 (25%), Positives = 277/657 (42%), Gaps = 149/657 (22%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLV-------------------------------------- 295
           G  GL N GNTCFMN+ +QCL                                       
Sbjct: 99  GAQGLKNHGNTCFMNAVVQCLSNTDLLAEFLALGRYRAAPGRAEVTEQLAALVRALWTRE 158

Query: 296 HTPEFARYFR---EDYRREINWQNPLGMVELLAFLLDGLHEDLNRVKHKPYIKSKDADGR 352
           +TP+ +  F+     Y  +    +    +E L +LLD +HEDL      P ++    +  
Sbjct: 159 YTPQLSAEFKNAVSKYGSQFQGNSQHDALEFLLWLLDRVHEDLEGSSRGPVLEKLPPEAN 218

Query: 353 PDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTT 412
              E      A  +   +S +    Q QY+S+L CP C K S TFDPF+ +SLP+    T
Sbjct: 219 KTSENCLSPSA-QLPLGESFVQSHFQAQYRSSLTCPHCLKQSNTFDPFLCVSLPIPLRQT 277

Query: 413 RTMTVT-VFTSD-------GSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAE 464
           R ++VT VF S        G A+P   TV V      R ++   G +     ++E+ + E
Sbjct: 278 RFLSVTLVFPSKSQRFLRVGLAVPILSTVAV-----LRRMVAEEGGV----PADEVILVE 328

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRVPK------LVKKAVFLQLIHRLQEQEP- 516
           +     QR F D+    L+TI + D++ A++VP       L    + L +  RL  +E  
Sbjct: 329 LYPSGFQRSFFDE--EDLNTIAEGDNVYAFQVPPSPSQGTLSAHPLALSVSPRLAAREGQ 386

Query: 517 --------------------GAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLS 556
                               G+ Q  S+   +G P +  I  D  +S  ++Q ++   + 
Sbjct: 387 RFSLSLHSESKVLILFCNLVGSGQQASR---FGPPFL--IREDRAVSWAQLQQSILSKVR 441

Query: 557 PFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDE 616
             +K E+ +                      N  S  +      S A +     L   D 
Sbjct: 442 HLMKSEAPVQ---------------------NLGSLFSIRVVGLSVACSY----LSPKDS 476

Query: 617 SNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLE----VFKNGPVT 672
             +C   +V+    +R P     + + V+W   + E+   +  E   +    V++     
Sbjct: 477 RPLC-HWAVDRALHLRRPGGPPHVKLAVEWDSSVKERLFGNLQEERAQDADSVWQQ---Q 532

Query: 673 KKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF 732
           +  +    +L  C + + +EE L  +D W CP C+  +Q   KL LW LP++L+IHLKRF
Sbjct: 533 QAHQQHSCTLDECFQFYTKEEQLAQDDAWKCPHCQVLQQGMVKLSLWTLPDILIIHLKRF 592

Query: 733 SYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQ----------------------LY 770
                 ++KL T V FP+   N+  +VA +++S                         LY
Sbjct: 593 CQVGERRNKLSTLVKFPLSGLNMAPHVAQRSTSPEAGLGPWPSWKPPGCLPTSCPLDFLY 652

Query: 771 ELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           +LYA+ NH+G +  GHYTA+ +   + +WY++DDS + P+ ED+V +  AY+LFY++
Sbjct: 653 DLYAVCNHHGNLQGGHYTAYCRNSLDGQWYSYDDSTVEPLREDEVNTRGAYILFYQK 709


>gi|328788793|ref|XP_396802.3| PREDICTED: ubiquitin carboxyl-terminal hydrolase 31-like isoform 1
           [Apis mellifera]
          Length = 935

 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 192/732 (26%), Positives = 307/732 (41%), Gaps = 144/732 (19%)

Query: 202 SIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTL 261
           SIQ N      + S    P    +     W         H S + T  +  S RD    L
Sbjct: 96  SIQQNMSRLHGSQSYPERPGVKKVFRRPSWKKFINKMVQHMSNVGTQNHKTSHRDD---L 152

Query: 262 GSSGVTTRGASV-----------GLTGLLNLGNTCFMNS--------------------- 289
            SS    R               G+ GL N GNTCFMN+                     
Sbjct: 153 SSSAGDIRVPPPRPAHIPPDRVPGVIGLRNHGNTCFMNAVLQCLSHTDILAEYFVLDQYK 212

Query: 290 -----------------------------AIQCLVHTPEFARYFR---EDYRREINWQNP 317
                                        AI    + PE +  F+   + Y  +      
Sbjct: 213 VDLSRRNKLNSKKYGTKGEITEQLALLLKAIWSCQYDPEMSTAFKSVVDKYGSQYRGNLQ 272

Query: 318 LGMVELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVC 377
               E L +LLD +HEDLN+   K Y   K++ GRPD+ VA E  ANH+  N+S +  V 
Sbjct: 273 HDAQEFLLWLLDKVHEDLNQATKKKYKIIKNSFGRPDDIVAAETLANHVRCNNSFVHAVF 332

Query: 378 QGQYKSTLVCPVCNKVSVTFDPFMYLSLPL-QATTTRTMTVTVFTSDGSALPSTYTVTVP 436
           Q Q++S+L CP C++ S TFDPF+ +S+P+ Q      + V V  +          V+V 
Sbjct: 333 QAQFRSSLTCPRCHRQSNTFDPFLCVSVPVPQNHRQMNLFVNVLYTSQQPRQVKIGVSVN 392

Query: 437 KHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVP 496
           +    R+L ++L +   + ++  L + E+ +    R   D    LS I ++D L    +P
Sbjct: 393 QMANVRELREILASDTGIDENHML-LTEVHDEGFHRTFSD-CQPLSVITENDPLYCIELP 450

Query: 497 KLVKKA----VFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQ 552
           +L +      + L  I+ L + +          + +G+P    +SR+   S   +Q  + 
Sbjct: 451 QLKEPTEQAYILLVWINILMKGDLR--------QRFGSPYTMQVSRE--TSYEDLQKLLL 500

Query: 553 RMLSPFLKKESLMHADSFDPSSM-VTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPL 611
           + +   L  + L  + S  P    +   DP       +++ I  E       V  P    
Sbjct: 501 KEMHSVLADDVLTSSQS--PGLFNIRVADP-------AATPIQDEHPCIDPCVEHPLYTE 551

Query: 612 QLVDESNVCFDLSVEGDKTIRIP---SSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKN 668
           Q+     +C D S  G + +++      +T   +  D S ++ E  +   L+   E+   
Sbjct: 552 QIEQALALCADDS--GPQHVKLILEWDEATKCNIIQDDSDQIEEHASVKQLKTNSEL--G 607

Query: 669 GPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIH 728
           G VT         L  C + + R E L  ED W+CP C ++++  KKL LW LP++LVIH
Sbjct: 608 GAVT---------LEECFDLYTRAEILGAEDAWHCPYCNKKQEVVKKLGLWSLPDILVIH 658

Query: 729 LKRF---SYSRSMKHKLETFVNFPIHDFNLTKYVAN---------------------KNS 764
           LKRF   S  RS   KL   V+FP++ F++T ++A+                     K  
Sbjct: 659 LKRFRQQSKQRSTS-KLTMLVDFPLYGFDMTPHLAHNGVQTHNNVGSLGGLGWSPWKKPR 717

Query: 765 SRRQ--------LYELYALTNHYG-GMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDV 815
            R+Q        +Y+LYA+ NH+G  +  GHYTA  +   + +WY FDD+ +  +N+ ++
Sbjct: 718 PRQQNIPKYDENVYDLYAICNHHGQDLQGGHYTAFCRNPYDTQWYCFDDTRVEAVNDTNL 777

Query: 816 KSAAAYVLFYRR 827
            + AAY+LFY+R
Sbjct: 778 ITNAAYMLFYQR 789


>gi|390462942|ref|XP_002806841.2| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal
           hydrolase 43 [Callithrix jacchus]
          Length = 1123

 Score =  197 bits (500), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 175/665 (26%), Positives = 279/665 (41%), Gaps = 165/665 (24%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLV-------------------------------------- 295
           G  GL N GNTCFMN+ +QCL                                       
Sbjct: 99  GAQGLKNHGNTCFMNAVVQCLSNTDLLAEFLALGHYRAAPGRAEVTEQLAALVRALWTRE 158

Query: 296 HTPEFARYFR---EDYRREINWQNPLGMVELLAFLLDGLHEDLNRVKHKPYIKSKDADGR 352
           +TP+ +  F+     Y  +    +    +E L +LLD +HEDL             + G 
Sbjct: 159 YTPQLSAEFKNAVSKYGSQFQGNSQHDALEFLLWLLDRVHEDLE----------GSSRGS 208

Query: 353 PDEEVADEYWANHIARN-----------DSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
             E++  E  AN  + N            S +    Q QY+S+L CP C K S TFDPF+
Sbjct: 209 VSEKLPPE--ANKTSENCLSPSAQLSLGQSFVQSHFQAQYRSSLTCPHCLKQSNTFDPFL 266

Query: 402 YLSLPLQATTTRTMTVT-VFTSD-------GSALPSTYTVTVPKHGRCRDLIQVLGNICS 453
            +SLP+    TR ++VT VF S        G A+P   TV        R ++   G I  
Sbjct: 267 CVSLPIPLRQTRFLSVTLVFPSKSQRFLRVGLAVPILSTVAA-----LRKMVAEEGGI-- 319

Query: 454 LKQSEELKVAEIQNHSIQR-FLDDPLISLSTIKDDDHLAAYRVPK------LVKKAVFLQ 506
               +E+ + E+     QR F D+    L+TI + D++ A++VP       L    + L 
Sbjct: 320 --PVDEVILVELYPSGFQRSFFDE--EDLNTIAEGDNVYAFQVPPSPSQGTLSAHPLGLS 375

Query: 507 LIHRLQEQEP---------------------GAAQTTSQWKAYGTPLVSSISRDDVISSG 545
           L  RL  +E                      G+ Q  S+   +G P +  I  D  IS  
Sbjct: 376 LSPRLAARESQRFSLSLHSESKVLILFCNLVGSGQQASR---FGPPFL--IREDRAISWA 430

Query: 546 KIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVT 605
           ++Q ++   +   +K E+ +                      N  S  +      S A +
Sbjct: 431 QLQQSILSKVCHLMKSEAPVQ---------------------NLGSLFSIRVVGLSVACS 469

Query: 606 LPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEV 665
                L   D   +C   +V+    +R P     + + V+W   + E+   +  E   + 
Sbjct: 470 Y----LSPKDSRPLCH-WAVDRALHLRRPGGPPHVKLAVEWDGSVKERLFGNLQEERAQD 524

Query: 666 FKNGPVTKKA-RTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEV 724
             +    ++A R    +L  C + + +EE L  +D W CP C+  +Q   KL LW LP++
Sbjct: 525 ADSVWQQQQAHRQHSCTLDECFQFYTKEEQLAQDDAWKCPHCQVLQQGMVKLSLWTLPDI 584

Query: 725 LVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSS-----------RRQ----- 768
           L+IHLKRF      ++KL T V FP+   N+  +VA +++S           +R      
Sbjct: 585 LIIHLKRFCQVGERRNKLSTLVKFPLSGLNMAPHVAQRSTSPDAGLDPWPSWKRPGCLPT 644

Query: 769 ------LYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYV 822
                 LY+LYA+ NH+G +  GHYTA+ +   + +WY++DDS + P+ ED++ +  AY+
Sbjct: 645 SYPLDFLYDLYAVCNHHGNLQGGHYTAYCRNSLDGQWYSYDDSTVEPLQEDEINTRGAYI 704

Query: 823 LFYRR 827
           LFY++
Sbjct: 705 LFYQK 709


>gi|351701613|gb|EHB04532.1| Ubiquitin carboxyl-terminal hydrolase 43 [Heterocephalus glaber]
          Length = 1130

 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 182/654 (27%), Positives = 285/654 (43%), Gaps = 130/654 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHT---PEF---ARYFREDYRREINWQ------------ 315
           G  GL N GNTCFMN+ +QCL +T    EF    RY     R E+  Q            
Sbjct: 101 GAQGLKNHGNTCFMNAVVQCLSNTDLLAEFLALGRYRAAPGRAEVTQQLAALVRALWTRE 160

Query: 316 ----------NPLG-------------MVELLAFLLDGLHEDL---NRVKHKPYIKSKDA 349
                     N +               +E L +LLD +HEDL   +R     +I S  A
Sbjct: 161 YTPQLSAEFKNAVSKYGSQFQGNSQHDALEFLLWLLDRVHEDLEGSSRGLVGRWIVSNLA 220

Query: 350 DGR------PDEEVADEYWANHIAR---NDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPF 400
                    P+     E   +  A+     S +    Q QY+S+L CP C K S TFDPF
Sbjct: 221 SFPVSLQLLPEASKTPENLQSSSAQLSLGQSFVQSHFQAQYRSSLTCPHCLKQSNTFDPF 280

Query: 401 MYLSLPLQATTTRTMTVTV--------FTSDGSALPSTYTVTVPKHGRCRDLIQVLGNIC 452
           + +SLP+    TR +TVT+        F   G A+P   TV        R +    G + 
Sbjct: 281 LCVSLPIPLRQTRFLTVTLVFPCKSQRFLRVGLAVPILSTVAA-----LRKMAAEEGGV- 334

Query: 453 SLKQSEELKVAEIQNHSIQR-FLDDPLISLSTIKDDDHLAAYRVPK------LVKKAVFL 505
               ++E+ + E+  +  QR F D+    L+TI + D++ A++VP       L   A  L
Sbjct: 335 ---PADEVILVELYPNGFQRSFFDE--EDLNTIAEGDNVYAFQVPPSPSQGTLSAHAPSL 389

Query: 506 QLIHRLQEQEPGAAQTTSQWKAYGTPLVSS----ISRDDVISSGKIQSTVQRMLSPFLKK 561
            L  RL  QE          + +  PL S     I   +++ SG+  S   R   PFL +
Sbjct: 390 PLSPRLVAQE---------GQRFSLPLHSENKVLILFCNLVGSGQQAS---RFGPPFLIR 437

Query: 562 ESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQL-----VDE 616
           E    + +     +++ V           S+   ++  S  ++ +  LPL       +D 
Sbjct: 438 EDRTISWAQLQQCILSKV------RCLMRSDAPAQNLGSLFSIRVVGLPLACSYLSPLDS 491

Query: 617 SNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKAR 676
             +C   +V+    +R P     + + V+W     E       E  +    +    ++A 
Sbjct: 492 RPLCH-WAVDRALHLRRPGGPPHVKLAVEWDCATKECLFGSLQEEQVPDADSVWRQQQAH 550

Query: 677 TEP-LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYS 735
            +P  +L  C + + +EE L  +D W CP CK  +Q   KL LW LP +L+IHLKRF   
Sbjct: 551 QQPSCTLDECFQFYTKEEQLAQDDAWKCPHCKVLQQGMVKLSLWTLPNILIIHLKRFCQV 610

Query: 736 RSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQ----------------------LYELY 773
              ++KL T + FP+   ++  +VA +++S +                       LY+LY
Sbjct: 611 GERRNKLSTLIKFPLSGLDMAPHVAQRSTSCKPVPGPWPSWKQPASLPTSYPVDFLYDLY 670

Query: 774 ALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           A+ NH+G +  GHYTA+ +   + +WY++DDS + PI ED+V +  AY+LFY++
Sbjct: 671 AVCNHHGSLQGGHYTAYCRNSLDGQWYSYDDSTVEPIQEDEVNTRGAYILFYQK 724


>gi|403275388|ref|XP_003929431.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 43 [Saimiri
           boliviensis boliviensis]
          Length = 1147

 Score =  196 bits (499), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 174/665 (26%), Positives = 277/665 (41%), Gaps = 165/665 (24%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLV-------------------------------------- 295
           G  GL N GNTCFMN+ +QCL                                       
Sbjct: 123 GAQGLKNHGNTCFMNAVVQCLSNTDLLAEFLALGRYRAAPGRAEVTEQLAALVRALWTRE 182

Query: 296 HTPEFARYFR---EDYRREINWQNPLGMVELLAFLLDGLHEDLNRVKHKPYIKSKDADGR 352
           +TP+ +  F+     Y  +    +    +E L +LLD +HEDL             + G 
Sbjct: 183 YTPQLSAEFKNAVSKYGSQFQGNSQHDALEFLLWLLDRVHEDLE----------GSSRGS 232

Query: 353 PDEEVADEYWANHIARN-----------DSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
             E++  E  AN  + N            S +    Q QY+S+L CP C K S TFDPF+
Sbjct: 233 VSEKLPPE--ANKTSENCLSPSAQLSLGQSFVQSHFQAQYRSSLTCPHCLKQSNTFDPFL 290

Query: 402 YLSLPLQATTTRTMTVT-VFTSD-------GSALPSTYTVTVPKHGRCRDLIQVLGNICS 453
            +SLP+    TR ++VT VF S        G A+P   TV        R ++   G I  
Sbjct: 291 CVSLPIPLRQTRFLSVTLVFPSKSQRFLRVGLAVPILSTVAA-----LRKMVAEEGGI-- 343

Query: 454 LKQSEELKVAEIQNHSIQR-FLDDPLISLSTIKDDDHLAAYRVPK------LVKKAVFLQ 506
               +E+ + E+     QR F D+    L+TI + D++ A++VP       L    + L 
Sbjct: 344 --PVDEVILVELYPSGFQRSFFDE--EDLNTIAEGDNVYAFQVPPSPSQGTLSAHPLGLS 399

Query: 507 LIHRLQEQEP---------------------GAAQTTSQWKAYGTPLVSSISRDDVISSG 545
           L  RL  +E                      G+ Q  S+   +G P +  I  D  IS  
Sbjct: 400 LSPRLAAREGQRFSLSLHSESKVLILFCNLVGSGQQASR---FGPPFL--IREDRAISWA 454

Query: 546 KIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVT 605
           ++Q ++   +   +K E+ +                      N  S  +      S A +
Sbjct: 455 QLQQSILSKVRHLMKNEAPVQ---------------------NLGSLFSIRVVGLSVACS 493

Query: 606 LPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEV 665
                L   D   +C   +V+    +R P     + + V+W   + E+   +  E   + 
Sbjct: 494 Y----LSPKDSRPLCH-WAVDRALHLRRPGGPPHVKLAVEWDGSVKERLFGNLQEERAQD 548

Query: 666 FKNGPVTKKA-RTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEV 724
             +    ++A R    +L  C + + +EE L  +D W CP C+  +Q   KL LW LP++
Sbjct: 549 ADSVWQQQQAHRQHSCTLDECFQFYTKEEQLAQDDAWKCPHCQVLQQGMVKLSLWTLPDI 608

Query: 725 LVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQ---------------- 768
           L+IHLKRF      ++KL T V FP+   N+  +VA +++S                   
Sbjct: 609 LIIHLKRFCQVGERRNKLSTLVKFPLSGLNMAPHVAQRSTSPEAGLGPWPSWKQPGCLPT 668

Query: 769 ------LYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYV 822
                 LY+LYA+ NH+G +  GHYTA+ +   + +WY++DDS + P+ ED++ +  AY+
Sbjct: 669 SYPLDFLYDLYAVCNHHGNLQGGHYTAYCRNSLDGQWYSYDDSTVEPLQEDEINTRGAYI 728

Query: 823 LFYRR 827
           LFY++
Sbjct: 729 LFYQK 733


>gi|326931555|ref|XP_003211894.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 32-like [Meleagris
           gallopavo]
          Length = 1561

 Score =  196 bits (498), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 163/543 (30%), Positives = 234/543 (43%), Gaps = 145/543 (26%)

Query: 36  KRPSGIDNSDLVND-----ATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGP 90
           ++P  IDN  LV       A+    G   +    L+EGRDY+++P+ VW  L+ WYG   
Sbjct: 469 QKPGAIDNQPLVTQEPVKAASLTMEGGRLKRSPQLVEGRDYVMVPEPVWRALYHWYGANL 528

Query: 91  TLARKVISSGLSQTELA-VEVYPLRLQLLVM---PRGECSTIRI---------------- 130
           +L R VI +  S+T +  +E++P  L  L      R + S I +                
Sbjct: 529 SLPRPVIKN--SKTNVPELELFPRYLLFLRQQPATRTQQSNIWVNMGNVPSPNAPLKRVL 586

Query: 131 ------SKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQ 184
                 S+ +TI E+H        +  E + +W Y       L++             D+
Sbjct: 587 AYTGCFSRMQTIKEIHEYLSQRLRIKEEDMRLWLYNSENYLTLLD-------------DE 633

Query: 185 DILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSE 244
           D  +E L           IQD          +++E     +S     S    +S+    +
Sbjct: 634 DHRLEYL----------KIQDE-------QHLVIEVRNKDMSWPEEMSFIANSSKIDRHK 676

Query: 245 ISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF 304
           + T                          G TGL NLGNTCFMNS+IQC+ +T    RYF
Sbjct: 677 VPTEK------------------------GATGLSNLGNTCFMNSSIQCVSNTQPLTRYF 712

Query: 305 ---REDYRREINWQNPLGMV---------------------------------------- 321
              R  Y  E+N  NP+GM                                         
Sbjct: 713 ISGRHLY--ELNRTNPIGMKGHMAKCYGDLVQELWSGTQKNIAPLKLRWTIAKYAPRFNG 770

Query: 322 -------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIV 374
                  ELLAFLLDGLHEDLNRV  KPY++ KD+DGRPD EVA E W NH+ RN SI+V
Sbjct: 771 FQQQDSQELLAFLLDGLHEDLNRVHDKPYVELKDSDGRPDWEVAAEAWENHLRRNRSIVV 830

Query: 375 DVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVT 434
           D+  GQ KS + C  C  +SV FDPF +LSLPL   +   + +TV   DG+  P  Y + 
Sbjct: 831 DLFHGQLKSQVKCKTCGHISVRFDPFNFLSLPLPMDSYMHLEITVIKLDGTT-PVRYGLR 889

Query: 435 VPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF-LDDPLISLSTIKDDDHLAAY 493
           +    +   L + L  +C LK  E++ +AE+ + +I+ F  D+  + LS       L A+
Sbjct: 890 LNMDEKYTGLKKQLSELCGLK-PEQILLAEVHSSNIKNFPQDNQKVRLSV---SGFLCAF 945

Query: 494 RVP 496
            +P
Sbjct: 946 EIP 948



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 82/139 (58%), Gaps = 2/139 (1%)

Query: 635  SSSTSIVVYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREE 693
            +S  +  + VDW    L  +Y T   E ++E  ++   +++A+ EP++L +CL AF  EE
Sbjct: 1138 ASVGNAYIAVDWDPTALHLRYQTS-QERIVEEHESVEQSRRAQAEPINLDSCLRAFTSEE 1196

Query: 694  PLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDF 753
             L  ++M+YC +CK    A+KKLDLWRLP +L+IHLKRF +      K +  V FP  +F
Sbjct: 1197 ELGEDEMYYCSKCKTHCLATKKLDLWRLPPILIIHLKRFQFVNGRWIKSQKIVKFPRENF 1256

Query: 754  NLTKYVANKNSSRRQLYEL 772
            + + ++  ++ S  Q  +L
Sbjct: 1257 DPSAFLVQRDPSHFQRKQL 1275



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 39/59 (66%), Gaps = 1/59 (1%)

Query: 769  LYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            +Y LYA++ H G MG GHY  + K  + N+WY ++DS    ++ D++ + +AY+LFY +
Sbjct: 1466 IYNLYAISCHSGIMGGGHYVTYAKNPN-NKWYCYNDSSCKELHPDEIDTDSAYILFYEQ 1523


>gi|311268397|ref|XP_003132035.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 43 [Sus scrofa]
          Length = 1123

 Score =  195 bits (496), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 163/651 (25%), Positives = 274/651 (42%), Gaps = 137/651 (21%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLV-------------------------------------- 295
           G  GL N GNTCFMN+ +QCL                                       
Sbjct: 101 GAQGLKNHGNTCFMNAVVQCLSNTDLLAEFLALGRYRAVPGRAEVTEQLAALVRALWTRE 160

Query: 296 HTPEFARYFR---EDYRREINWQNPLGMVELLAFLLDGLHEDLNRVKHKPYIKSKDADGR 352
           +TP+ +  F+     Y  +    +    +E L +LLD +HEDL      P       + R
Sbjct: 161 YTPQLSAEFKNAVSKYGSQFQGNSQHDALEFLLWLLDRVHEDLEGSARGPTADKLLPEAR 220

Query: 353 PDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTT 412
              E      A  ++   S +    Q QY+S+L CP C K S TFDPF+ +SLP+    T
Sbjct: 221 KTSENPPSPSA-QLSLGQSFVQSHFQAQYRSSLTCPHCLKQSNTFDPFLCVSLPIPLRQT 279

Query: 413 RTMTVTV--------FTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAE 464
           R ++VT+        F   G A+P   TV        R ++   G I     + E+ + E
Sbjct: 280 RFLSVTLVFLSQSQRFLRVGLAVPILSTVAA-----LRKMVAEEGGI----PAAEVILVE 330

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRVPKLVKKAVF------LQLIHRLQEQE-- 515
           +  + +QR F D+    L+TI + D++ A++ P    + +       L +  RL  +E  
Sbjct: 331 LYPNGLQRSFFDE--EDLNTIAEGDNVYAFQAPPSPGQEMLSACPPGLPVSPRLAAREGQ 388

Query: 516 ------PGAAQ----------TTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFL 559
                 PG  +          +  Q   +G P +  I  D  IS  ++Q ++   +   +
Sbjct: 389 RLSRPVPGENKVLILFCNLVGSGQQASRFGPPFL--IREDRAISWAQLQQSILNKVRYLM 446

Query: 560 KKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNV 619
           K E+ +     +P S+ +                          ++L    L   D   +
Sbjct: 447 KGEAPVQ----NPGSLFSI---------------------RVVGLSLACSYLSPQDSRPL 481

Query: 620 CFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEK-YNTHFLENLLEVFKNGPVTKKARTE 678
           C   +V+    +R P   + + + V+W     E+ + +   E + +        +  +  
Sbjct: 482 CH-WAVDRALHLRRPGGPSHVKLAVEWDSGTQERLFGSVQEERVQDADSVWQQQQAHQQH 540

Query: 679 PLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM 738
             +L  C + + +EE L  +D W CP C+  +Q   KL LW LP++L+IHLKRF      
Sbjct: 541 SCTLDECFQFYTKEEQLAQDDAWRCPHCQALQQGVVKLSLWTLPDILIIHLKRFCQVGER 600

Query: 739 KHKLETFVNFPIHDFNLTKYVANKNSSRRQ----------------------LYELYALT 776
           ++KL T V FP+   ++  +VA +++  +                       LY+LYA+ 
Sbjct: 601 RNKLSTLVKFPLSGLDMAPHVAQRSTGPKGAPGPWPSWKQPACLPTSYPPDFLYDLYAVC 660

Query: 777 NHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           NH G +  GHYTA+ +   + +WY++DDS + P+ ED+V +  AY+LFY++
Sbjct: 661 NHQGSLQGGHYTAYCRNSLDGQWYSYDDSTVEPLLEDEVNTRGAYILFYQK 711


>gi|395517831|ref|XP_003763075.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 11-like
           [Sarcophilus harrisii]
          Length = 461

 Score =  195 bits (496), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 161/488 (32%), Positives = 217/488 (44%), Gaps = 138/488 (28%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W+Q W  YV        GD  S            S  P  ++N++L  D           
Sbjct: 55  WYQQWEAYVR------AGDQDS------------SAFPGPVNNAELFEDQETR------R 90

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           + + L+EG DY+LLP   W+ L  WYG   G P + RKV+   L  T   VEVY   ++L
Sbjct: 91  LKERLVEGEDYVLLPAMAWHLLVKWYGLEPGQPPIERKVVE--LPSTH-KVEVY--LVEL 145

Query: 118 LVMPRGECSTIR---ISKKETIGELHRRACSIFYLNL-EQICIWDYYGHRKHALMNDMDR 173
           L+    +  T R    S+ + I  +   A   F +   E+  +W      K+A       
Sbjct: 146 LLCQHNDMETSRPAQFSRADPIELVLHTAREQFSVGPDEETRLW-----VKNA------- 193

Query: 174 TLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSA 233
              D + +  ++I + VLD   G                   V++  +++     G W +
Sbjct: 194 ---DGSCERLRNIHMSVLDACLG----------------PGQVIIMETRNK---DGTWPS 231

Query: 234 SKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQC 293
           S          +  SP+     + +   G  GV       GLT   NLGNTCFMNSA+QC
Sbjct: 232 S------WPHIMKNSPD-----EDEGFRGQPGVC------GLT---NLGNTCFMNSALQC 271

Query: 294 LVHTPEFARYFRED-YRREINWQNPLGM-------------------------------- 320
           L + P    YF  + Y +E+N+ NPLGM                                
Sbjct: 272 LSNVPPLTEYFLHNHYLKELNFCNPLGMKGEIAEAYADLVKQAWSGHHRAVVPRMFKTKV 331

Query: 321 ---------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANH 365
                           ELL+FLLDGLHEDLNRVK K Y++ +DA GRPD+EVADE W NH
Sbjct: 332 GHFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVELRDAAGRPDQEVADEAWRNH 391

Query: 366 IARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGS 425
             RNDS+IVD+  G +KSTLVCP C KVSVTFDPF YLS+PL  +  R M V   + D  
Sbjct: 392 KRRNDSVIVDIFHGLFKSTLVCPECGKVSVTFDPFCYLSVPLPVSKERGMEVFFVSMDPR 451

Query: 426 ALPSTYTV 433
             P   T+
Sbjct: 452 RKPEQVTL 459


>gi|118100328|ref|XP_415892.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 32 [Gallus gallus]
          Length = 1660

 Score =  195 bits (496), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 163/543 (30%), Positives = 235/543 (43%), Gaps = 145/543 (26%)

Query: 36   KRPSGIDNSDLVND-----ATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGP 90
            ++P  IDN  LV       A+    G   +    L+EGRDY+++P+ VW  L+ WYG   
Sbjct: 568  QKPGAIDNQPLVTQEPVKAASLTMEGGRLKRSPQLVEGRDYVMVPEPVWRALYHWYGANL 627

Query: 91   TLARKVISSGLSQTELA-VEVYP---LRLQLLVMPRGECSTIRI---------------- 130
            +L R VI +  S+T +  +E++P   L L+     R + S I +                
Sbjct: 628  SLPRPVIKN--SKTNVPELELFPRYLLFLRQQPATRTQQSNIWVNMGNVPSPNAPLKRVL 685

Query: 131  ------SKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQ 184
                  S+ +TI E+H        +  E + +W Y       L++             D+
Sbjct: 686  AYTGCFSRMQTIKEIHEYLSQRLRIKEEDMRLWLYNSENYLTLLD-------------DE 732

Query: 185  DILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSE 244
            D  +E L           IQD          +++E     +S     S    +S+    +
Sbjct: 733  DHRLEYL----------KIQDE-------QHLVIEVRNKDMSWPEEMSFIANSSKIDRHK 775

Query: 245  ISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF 304
            + T                          G TGL NLGNTCFMNS+IQC+ +T    RYF
Sbjct: 776  VPTEK------------------------GATGLSNLGNTCFMNSSIQCVSNTQPLTRYF 811

Query: 305  ---REDYRREINWQNPLGMV---------------------------------------- 321
               R  Y  E+N  NP+GM                                         
Sbjct: 812  ISGRHLY--ELNRTNPIGMKGHMAKCYGDLVQELWSGTQKNIAPLKLRWTIAKYAPRFNG 869

Query: 322  -------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIV 374
                   ELLAFLLDGLHEDLNRV  KPY++ KD+DGRPD EVA E W NH+ RN SI+V
Sbjct: 870  FQQQDSQELLAFLLDGLHEDLNRVHDKPYVELKDSDGRPDWEVAAEAWENHLRRNRSIVV 929

Query: 375  DVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVT 434
            D+  GQ KS + C  C  +SV FDPF +LSLPL   +   + +TV   DG+  P  Y + 
Sbjct: 930  DLFHGQLKSQVKCKTCGHISVRFDPFNFLSLPLPMDSYMHLEITVIKLDGTT-PVRYGLR 988

Query: 435  VPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF-LDDPLISLSTIKDDDHLAAY 493
            +    +   L + L  +C LK  E++ +AE+ + +I+ F  D+  + LS       L A+
Sbjct: 989  LNMDEKYTGLKKQLSELCGLK-PEQILLAEVHSSNIKNFPQDNQKVRLSV---SGFLCAF 1044

Query: 494  RVP 496
             +P
Sbjct: 1045 EIP 1047



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 82/139 (58%), Gaps = 2/139 (1%)

Query: 635  SSSTSIVVYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREE 693
            +S  +  + VDW    L  +Y T   E ++E  ++   +++A+ EP++L +CL AF  EE
Sbjct: 1237 ASVGNAYIAVDWDPTALHLRYQTS-QERIVEEHESVEQSRRAQAEPINLDSCLRAFTSEE 1295

Query: 694  PLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDF 753
             L  ++M+YC +CK    A+KKLDLWRLP +L+IHLKRF +      K +  V FP  +F
Sbjct: 1296 ELGEDEMYYCSKCKTHCLATKKLDLWRLPPILIIHLKRFQFVNGRWIKSQKIVKFPRENF 1355

Query: 754  NLTKYVANKNSSRRQLYEL 772
            + + ++  ++ S  Q  +L
Sbjct: 1356 DPSAFLVQRDPSHFQRKQL 1374



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 39/59 (66%), Gaps = 1/59 (1%)

Query: 769  LYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            +Y LYA++ H G MG GHY  + K  + N+WY ++DS    ++ D++ + +AY+LFY +
Sbjct: 1565 IYNLYAISCHSGIMGGGHYVTYAKNPN-NKWYCYNDSSCKELHPDEIDTDSAYILFYEQ 1622


>gi|326674232|ref|XP_686236.5| PREDICTED: ubiquitin carboxyl-terminal hydrolase 32-like [Danio
           rerio]
          Length = 1572

 Score =  195 bits (495), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 161/547 (29%), Positives = 236/547 (43%), Gaps = 145/547 (26%)

Query: 32  SSASKRPSGIDNSDLVNDATAEDP-----GAGPEIVDTLLEGRDYILLPQEVWNQLHSWY 86
           S A +RP  IDN  LV     + P     G   +    LL GR++  +P+ VW  L+ WY
Sbjct: 502 SLAVQRPGAIDNQPLVTTEPMKAPTLTMEGGRLKKSHQLLSGREFETVPEPVWRALYHWY 561

Query: 87  GGGPTLARKVISSGL-SQTELAVEVYPLRLQLLV------------------MPRGECST 127
           G   +L R VI S + +Q EL  E++PL L  L                   +P      
Sbjct: 562 GANLSLPRPVIKSTVKAQPEL--ELFPLYLLFLRQQPATRSPQSNIWVNMGNVPSPNAPL 619

Query: 128 IRI-------SKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANI 180
            R+       S+  TI ++H        +  E + +W Y       L++D D TL+   I
Sbjct: 620 KRVLAYTGCFSRMCTIKDIHEYLSQRLRIKEEDMRLWLYNSENYLTLLDDEDHTLESLKI 679

Query: 181 QMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRN 240
             +Q +++EV +           +D  + E+                    S    +S+ 
Sbjct: 680 PDEQHLVIEVRN-----------KDMSWPEEM-------------------SFIANSSKI 709

Query: 241 HSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEF 300
              ++ T              G++G++  G            NTCFMNS+IQC+ +T   
Sbjct: 710 DRHKVPTEK------------GATGLSNLG------------NTCFMNSSIQCVSNTKPL 745

Query: 301 ARYF---REDYRREINWQNPLGM------------------------------------- 320
             YF   R  Y  E+N  NP+GM                                     
Sbjct: 746 TEYFISGRHLY--ELNRTNPIGMRGHMAKCYGDLVQELWSGTQKNVAPLKLRWTIAKYAP 803

Query: 321 ----------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARND 370
                      ELLAFLLDGLHEDLNRV  KPY++ KD+DGRPD EVA E W NH+ RN 
Sbjct: 804 RFNGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVELKDSDGRPDHEVATEAWENHLRRNR 863

Query: 371 SIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPST 430
           SI+VD+  GQ +S + C  C  +S  FDPF +LSLPL   ++  + +TV   DGS  P  
Sbjct: 864 SIVVDLFHGQLRSQVKCKTCGHISARFDPFNFLSLPLPMDSSMHLEITVIKLDGST-PVR 922

Query: 431 YTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF-LDDPLISLSTIKDDDH 489
           Y + +    +   L + L  +CSLK  E++ +AE+   +I+ F LD+  +  S    +  
Sbjct: 923 YGLRLNMDEKYMGLKKQLSELCSLK-PEQILLAEVHTSNIKNFPLDNQKVRHSV---NGF 978

Query: 490 LAAYRVP 496
           L A+ +P
Sbjct: 979 LCAFEIP 985



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/126 (38%), Positives = 77/126 (61%), Gaps = 2/126 (1%)

Query: 642  VYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
            + VDW    L  +Y T   E ++E   +   +++A+ EP+SL +CL+AF  EE L  +++
Sbjct: 1177 IAVDWDPTALHLRYQTS-QERIVEEHPSVEQSRRAQAEPISLDSCLKAFTSEEELGEDEL 1235

Query: 701  WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
            +YC +CK  R A+KKLDLWRLP VL++HLKRF +      K +  V FP   F+ + ++A
Sbjct: 1236 YYCSKCKTHRLATKKLDLWRLPPVLIVHLKRFQFVNGRWIKSQKIVKFPRESFDPSAFLA 1295

Query: 761  NKNSSR 766
             +  S+
Sbjct: 1296 PREVSQ 1301



 Score = 57.4 bits (137), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 39/59 (66%), Gaps = 1/59 (1%)

Query: 769  LYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            LY LYA++ H G MG GHY  + K  +E +WY ++DS    ++ D++ + +AY+LFY +
Sbjct: 1477 LYNLYAISCHSGIMGGGHYVTYAKNPNE-KWYCYNDSSCKEVHSDEIDTDSAYILFYEQ 1534


>gi|344258659|gb|EGW14763.1| Ubiquitin carboxyl-terminal hydrolase 11 [Cricetulus griseus]
          Length = 471

 Score =  195 bits (495), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 149/457 (32%), Positives = 204/457 (44%), Gaps = 118/457 (25%)

Query: 26  HFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSW 85
           +       A+  P  I+NS L  D           + + LLEG DY+LLP   WN L SW
Sbjct: 65  YVKGGDQDANTFPGCINNSGLFEDQI------NWHLREGLLEGDDYVLLPMTSWNYLVSW 118

Query: 86  YG---GGPTLARKVIS-SGLSQTELAVEVYPLRLQLLVMPRGECS-TIRISKKETIGELH 140
           YG     P + RKVI  SG+ +    VE+YP+ L L+     E + TI+ S  +++  + 
Sbjct: 119 YGLEDDQPPIERKVIEVSGIRK----VELYPIELLLVQHSDMETALTIQFSHSDSLDLVL 174

Query: 141 RRACSIFYLN-LEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNC 199
           + A   F +   E   +W          + +   TL DA+++  Q +++E   N +GT  
Sbjct: 175 QTAREQFLVEPQEDTRLWVKNSEGSLDRLCNTQITLLDASLETGQLVIMET-RNKDGT-- 231

Query: 200 KSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDN 259
                                          W +++    N+  E           + ++
Sbjct: 232 -------------------------------WPSAQLCGMNNMPE-----------EDED 249

Query: 260 TLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPL 318
             G  G+          GL NLGNTCFMNSA+QCL + P+   YF  + Y  E+N++NPL
Sbjct: 250 FQGQPGIC---------GLTNLGNTCFMNSALQCLSNVPQLTEYFLNNRYLEELNFRNPL 300

Query: 319 GM-----------------------------------------------VELLAFLLDGL 331
           GM                                                ELL+FLLDGL
Sbjct: 301 GMKGELAEAYADLVKQTWSGYHRSIVPNVFKNKVGHFASQFLGYQQHDSQELLSFLLDGL 360

Query: 332 HEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCN 391
           HEDLNRVK+K Y++  D  GRPD EVA E W NH  RNDS+IVD   G +KSTLVCP C 
Sbjct: 361 HEDLNRVKNKEYVELCDGAGRPDLEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCG 420

Query: 392 KVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALP 428
            VSVTFDPF YLS+PL  ++ R + V     D    P
Sbjct: 421 NVSVTFDPFCYLSVPLPVSSRRVLEVFFVPMDPRRKP 457


>gi|219109702|ref|XP_002176605.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411140|gb|EEC51068.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 603

 Score =  195 bits (495), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 149/533 (27%), Positives = 245/533 (45%), Gaps = 72/533 (13%)

Query: 322 ELLAFLLDGLHEDLNRVKHKPYI-KSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQ 380
           EL  +LLD LHED N V  KPY+ K +  D   D+E AD  W  H+ R +S +++   GQ
Sbjct: 116 ELATYLLDALHEDTNLVTKKPYVEKPEQKDTESDQEAADNAWELHLKRENSKVLENFMGQ 175

Query: 381 YKSTLVC--PVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKH 438
            KS + C    CN+VS TFDPFMYLS+P+  +  R + VT    +         +T+ K 
Sbjct: 176 IKSRVQCCKANCNRVSTTFDPFMYLSVPIPGSMERILKVTYVPMNPQQRMQKLEITISKM 235

Query: 439 GRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKL 498
              ++L  +L  I  L   +   V +I +  +  + + P   +  I+D+D+   Y +  L
Sbjct: 236 ATMKELFGLLKTIDDLALEDTCAV-DIWHQEVYSWYE-PKNEVDRIRDNDYTFLYELAPL 293

Query: 499 VKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQ------ 552
                                   +  KA G  +++ I  DD +  G I    Q      
Sbjct: 294 ------------------------AMVKAMGQTVLNGIETDDDVGLGTITKHYQLDLATM 329

Query: 553 ----------RMLSPFLKKESLMHADSFDPSSMVTTVDPSGE-----AHSNSSSNIAKED 597
                       LS +L+  +++H  S D  S +     + E          SS   +  
Sbjct: 330 TKLNSGDDWSAKLSTYLQNPTMLHNSSRDNCSELVNTSTNEEDVLDIIERCESSAFLENV 389

Query: 598 ASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTH 657
            S      L  +  ++  E      +S+E  +T   P     +++ +   +  L   N  
Sbjct: 390 RSRHDLAILEFIASKMRKEI-----VSLENQQTTMYPDG---VIIQIHIRKATLLSGN-- 439

Query: 658 FLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLD 717
                    +      +  +   ++  C+E + + E L   +MWYC +CK+  +A K+  
Sbjct: 440 --------HRTDECVARKSSNATTVLDCIEKYCQMEQLEDTEMWYCNKCKDHVRAWKQTH 491

Query: 718 LWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYAL 775
           L+R P +L++HLKRF YS S   + K+  F++FP+   +LT    +   + + LY+ YA+
Sbjct: 492 LYRCPPILIVHLKRFQYSSSTHRRDKIGLFIDFPLEGLDLTSVALHWTGAEKPLYDCYAV 551

Query: 776 TNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISP-INEDDVKSAAAYVLFYRR 827
           +NHYGG+G GHYTA+  L D+  W ++DDS ++  +  ++V S AAYVL+YRR
Sbjct: 552 SNHYGGLGGGHYTAY-ALNDDKVWCHYDDSRVTANVEPEEVVSEAAYVLYYRR 603



 Score = 57.0 bits (136), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 31/45 (68%), Gaps = 1/45 (2%)

Query: 276 TGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG 319
           +GL NLGNTCFMNS +QCL HT    RYF   +Y  ++N  NPLG
Sbjct: 1   SGLGNLGNTCFMNSTLQCLAHTHPLKRYFLSGEYGDDLNRNNPLG 45


>gi|348561147|ref|XP_003466374.1| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal
           hydrolase 43-like, partial [Cavia porcellus]
          Length = 1043

 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 170/656 (25%), Positives = 279/656 (42%), Gaps = 147/656 (22%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLV-------------------------------------- 295
           G  GL   GNTCFMN+ +QCL                                       
Sbjct: 19  GAQGLKXHGNTCFMNAVVQCLSNTDLLAEFLALGRYRAAPGRAEVTEQLAALVRALWTRE 78

Query: 296 HTPEFARYFR---EDYRREINWQNPLGMVELLAFLLDGLHEDL-----NRVKHKPYIKSK 347
           +TP+ +  F+     Y  +    +    +E L +LLD +HEDL       V  K   ++ 
Sbjct: 79  YTPQLSAEFKNAVSKYGSQFQGNSQHDALEFLLWLLDRVHEDLEGSSRGLVSEKLLPEAS 138

Query: 348 DADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPL 407
                P    A       +    S +    Q QY+S+L CP C K S TFDPF+ +SLP+
Sbjct: 139 KIPENPQSSSA------QLPLGQSFVQSHFQAQYRSSLTCPHCLKQSNTFDPFLCVSLPI 192

Query: 408 QATTTRTMTVTV--------FTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEE 459
               TR ++VT+        F   G A+P   TV        R ++   G +     +EE
Sbjct: 193 PLRQTRFLSVTLAFPCKSQRFLRVGLAVPILSTVAA-----LRKMVAEEGGV----PAEE 243

Query: 460 LKVAEIQNHSIQR-FLDDPLISLSTIKDDDHLAAYRVP------KLVKKAVFLQLIHRLQ 512
           + + E+  +  QR F D+    L+TI D D++ A++VP       L  + + L L  RL 
Sbjct: 244 VILVELYPNGFQRSFFDEE--DLNTIADGDNVYAFQVPLCPSQGTLSARPLGLLLSPRLA 301

Query: 513 EQEPGAAQTTSQWKAYGTPLVSS----ISRDDVISSGKIQSTVQRMLSPFLKKESLMHAD 568
            +E          + +  PL S     I   +++ SG+  S   R   PFL +E    + 
Sbjct: 302 ARE---------GQRFPLPLPSENKVLILFCNLVGSGQQAS---RFGPPFLIREDRSISW 349

Query: 569 SFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGD 628
           +     +++ V             + K +A +    +L    +++V  S  C  LS +  
Sbjct: 350 AQLEQCILSKV-----------RYLMKTEAPAQNLGSL--FSIRVVGLSLACSYLSPQDS 396

Query: 629 KTI-----------RIPSSSTSIVVYVDW----SQKLLEKYNTHFLENLLEVFKNGPVTK 673
           + +           R P     + + V+W     + L        + +   V++     +
Sbjct: 397 RPLCHWAVDRALHLRRPGGPPHVKLAVEWDCTTKECLFGSLQEERVPDADSVWRQ---QQ 453

Query: 674 KARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFS 733
             +    +L  C + + +EE L  +D W CP CK  +Q   KL LW LP++L+IHLKRF 
Sbjct: 454 AHQQHSCTLDECFQFYTKEEQLAQDDAWKCPHCKVLQQGVVKLSLWTLPDILIIHLKRFC 513

Query: 734 YSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQ----------------------LYE 771
                ++KL T + FP+   ++  +VA +++S +                       LY+
Sbjct: 514 QVGERRNKLSTLIKFPLSGLDMAPHVAQRSTSGKPLPGPWPSWKQPASLPTTYPLDFLYD 573

Query: 772 LYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           LYA+ NH+G +  GHYTA+ +   + +WY++DDS + PI ED+V +  AY+LFY++
Sbjct: 574 LYAVCNHHGSLQGGHYTAYCRNSLDGQWYSYDDSTVEPIREDEVNTRGAYILFYQK 629


>gi|444721005|gb|ELW61765.1| Ubiquitin carboxyl-terminal hydrolase 32 [Tupaia chinensis]
          Length = 1622

 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 165/561 (29%), Positives = 240/561 (42%), Gaps = 151/561 (26%)

Query: 18  GDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAED-----PGAGPEIVDTLLEGRDYI 72
           G   ++L HFN       ++P  IDN  LV     +       G   +    L+ G+DY 
Sbjct: 410 GTNGNILLHFNP------QKPGAIDNQPLVTQEPVKATSLTLEGGRLKRTPQLIHGKDYE 463

Query: 73  LLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELA-VEVYP---LRLQLLVMPRGECSTI 128
           ++P+ VW  L+ WYG    L R VI +  S+T++  +E++P   L L+     R + S I
Sbjct: 464 MVPEPVWRALYHWYGANLALPRPVIKN--SKTDIPELELFPRYLLFLRQQPATRTQQSNI 521

Query: 129 RI----------------------SKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHA 166
            +                      S+ +TI E+H        +  E + +W Y       
Sbjct: 522 WVNMGNVPSPNAPLKRVLAYTGCFSRMQTIKEIHEYLSQRLRIKEEDMRLWLYNSENYLT 581

Query: 167 LMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLS 226
           L++             D+D  +E L           IQD          +++E     +S
Sbjct: 582 LLD-------------DEDHRLEYL----------KIQDE-------QHLVIEVRNKDMS 611

Query: 227 IAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCF 286
                S    +S+    ++ T                          G TGL NLGNTCF
Sbjct: 612 WPEEMSFIANSSKIDRHKVPTEK------------------------GATGLSNLGNTCF 647

Query: 287 MNSAIQCLVHTPEFARYF---REDYRREINWQNPLGMV---------------------- 321
           MNS+IQC+ +T    +YF   R  Y  E+N  NP+GM                       
Sbjct: 648 MNSSIQCVSNTQPLTQYFISGRHLY--ELNRTNPIGMKGHMAKCYGDLVQELWSGTQKNV 705

Query: 322 -------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEE 356
                                    ELLAFLLDGLHEDLNRV  KPY++ KD+DGRPD E
Sbjct: 706 APLKLRWTIAKYAPRFNGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVELKDSDGRPDWE 765

Query: 357 VADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMT 416
           VA E W NH+ RN SI+VD+  GQ +S + C  C  +SV FDPF +LSLPL   +   + 
Sbjct: 766 VAAEAWDNHLRRNRSIVVDLFHGQLRSQVKCKTCGHISVRFDPFNFLSLPLPMDSYMHLE 825

Query: 417 VTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF-LD 475
           +TV   DGS  P  Y + +    +   L + L ++C LK SE++ +AE+   +I+ F  D
Sbjct: 826 ITVIKLDGST-PVRYGLRLNMDEKYTGLKKQLSDLCGLK-SEQILLAEVHGSNIKNFPQD 883

Query: 476 DPLISLSTIKDDDHLAAYRVP 496
           +  + LS       L A+ +P
Sbjct: 884 NQKVRLSV---SGFLCAFEIP 901



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 53/85 (62%), Gaps = 2/85 (2%)

Query: 642  VYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
            V VDW    L  +Y T   E +++  ++   +++A+ EP++L +CL AF  EE L   +M
Sbjct: 1263 VAVDWDPTALHLRYQTS-QERVVDEHESVEQSRRAQAEPINLDSCLRAFTNEEELGENEM 1321

Query: 701  WYCPQCKERRQASKKLDLWRLPEVL 725
            +YC +CK    A+KKLDLWRLP +L
Sbjct: 1322 YYCSKCKTHCLATKKLDLWRLPPIL 1346



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 39/61 (63%), Gaps = 1/61 (1%)

Query: 767  RQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYR 826
            + +Y LYA++ H G +G GHY  + K  +  +WY ++DS    ++ D++ + +AY+LFY 
Sbjct: 1525 KPIYNLYAISCHSGILGGGHYVTYAKNPN-CKWYCYNDSSCKELHPDEIDTDSAYILFYE 1583

Query: 827  R 827
            +
Sbjct: 1584 Q 1584


>gi|348532251|ref|XP_003453620.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 32 [Oreochromis
           niloticus]
          Length = 1585

 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 166/547 (30%), Positives = 231/547 (42%), Gaps = 149/547 (27%)

Query: 34  ASKRPSGIDNSDLVNDATAEDPGAGPEIVD---------TLLEGRDYILLPQEVWNQLHS 84
           A++RP  IDN  LV      DP   P +            LL  RD+  +P+ VW  L+ 
Sbjct: 518 AAQRPGAIDNQPLV----TTDPMKAPTLTMEGGRLKRSLQLLPRRDFETVPEPVWRALYH 573

Query: 85  WYGGGPTLARKVI-SSGLSQTELAVEVYPLRLQLL------------------------- 118
           WYG   +L R VI  S   Q EL  E++P  L  L                         
Sbjct: 574 WYGANLSLPRPVILESKTGQPEL--ELFPRYLLFLRQQPATRSPQSNIWVNMGNVPSPNA 631

Query: 119 VMPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDA 178
            + R    T   S+  TI ++H        +  E + +W Y       L++D D TL+  
Sbjct: 632 PLKRMLAYTGCFSRMGTIKDIHLYLSQRLRIKEEDMRLWLYNSENYLTLLDDEDHTLESL 691

Query: 179 NIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTS 238
            IQ +Q +++EV +           +D  + E                            
Sbjct: 692 KIQDEQQLVIEVRN-----------KDMSWPE---------------------------- 712

Query: 239 RNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTP 298
                E+S   N +S  D        G T      GL+ L   GNTCFMNS+IQC+ +T 
Sbjct: 713 -----EMSFIAN-SSKMDRHKVPTEKGAT------GLSNL---GNTCFMNSSIQCVSNTK 757

Query: 299 EFARYFRE-DYRREINWQNPLGM------------------------------------- 320
               YF    +  E+N  NP+GM                                     
Sbjct: 758 PLTDYFLSGKHLYELNRTNPIGMRGHMAKCYGDLVMELWSGTQKNVAPLKLRWTIAKYAP 817

Query: 321 ----------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARND 370
                      ELLAFLLDGLHEDLNRV  KPY++ KD+DGRPD EVA E W NH+ RN 
Sbjct: 818 RFNGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVELKDSDGRPDWEVASEAWENHLRRNR 877

Query: 371 SIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPST 430
           SI+VD+  GQ KS + C  C  +S  FDPF +LSLPL   ++  + +TV   DGS  P  
Sbjct: 878 SIVVDLFHGQLKSQVKCKTCGHISARFDPFNFLSLPLPMDSSMHLEITVIKLDGST-PVR 936

Query: 431 YTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF-LDDPLISLSTIKDDDH 489
           Y + +    +   L + L  +CSLK  E++ +AE+ + +I+ F  D+  + LS    +  
Sbjct: 937 YGLRLNMDEKYTGLKKQLSELCSLK-PEQILLAEVHSSNIKNFPQDNQKVRLSV---NGF 992

Query: 490 LAAYRVP 496
           L A+ VP
Sbjct: 993 LCAFEVP 999



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 83/137 (60%), Gaps = 2/137 (1%)

Query: 635  SSSTSIVVYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREE 693
            +S  +  + VDW    L  +Y T   E ++E   +   +++A+ EP+SL +CL+AF  EE
Sbjct: 1180 ASVGNAYIAVDWDPTALHLRYQTS-QERIVEEHCSVEQSRRAQAEPISLDSCLKAFTSEE 1238

Query: 694  PLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDF 753
             L  ++++YC +CK  R A+KKLDLWRLP +L++HLKRF +      K +  V FP  +F
Sbjct: 1239 ELGEDELYYCSKCKTHRLATKKLDLWRLPPILIVHLKRFQFVNGRWIKSQKIVKFPRENF 1298

Query: 754  NLTKYVANKNSSRRQLY 770
            + + ++A ++   R L+
Sbjct: 1299 DPSAFLAPRDLEHRCLH 1315



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 38/59 (64%), Gaps = 1/59 (1%)

Query: 769  LYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            +Y LYA++ H G +G GHY  + K  +  +WY ++DS    ++ +++ + +AY+LFY +
Sbjct: 1490 IYNLYAISCHSGILGGGHYVTYAKNPN-GKWYCYNDSSCKEVHSEEIDTDSAYILFYEQ 1547


>gi|393240437|gb|EJD47963.1| cysteine proteinase [Auricularia delicata TFB-10046 SS5]
          Length = 1229

 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 180/614 (29%), Positives = 265/614 (43%), Gaps = 140/614 (22%)

Query: 29  SAGSSASKRPSG-IDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYG 87
           + G++ S+   G +DNS L  ++       G   VD ++E  DY LLP+  W     WYG
Sbjct: 110 ATGATPSEADVGPVDNSSLFQES-------GRLKVD-IVETADYELLPEAAWKLFEEWYG 161

Query: 88  G-GPTLARKVISSGLSQTELAVEVYPLRLQLLVMPRG--------ECSTIRISKKETIGE 138
                L R V+  G + +   VEV+P R+ L  +  G        E   +  S    + +
Sbjct: 162 PCARPLPRNVVPRG-AVSGFRVEVHPPRVVLYRIVPGNGKELSGAEAVYLETSHAAKVSD 220

Query: 139 LHRRACS----IFYLNLEQICIWDYYGHRKHALMNDMDRTL----------DDANIQMDQ 184
           +  +AC+    I  +    +  W       HA  + +D T           D AN+    
Sbjct: 221 M-LKACAERLDIQGVEPADLRAWRLNCDSHHA--SGLDTTARDYPAGRLEDDGANLWPGL 277

Query: 185 DILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSE 244
           D+  + + +V G        D+G A      +++E  K      G W  +K      SS 
Sbjct: 278 DVPADAVVDVAGL-------DDGDA------IIIEAKKD-----GAWIVNK-----DSSN 314

Query: 245 ISTSPNLASARDSDNTLGSSGVTTRGASV-----------------GLTGLLNLGNTCFM 287
            ST+P   +         S+  +T    V                 G  GL+NLGNTCFM
Sbjct: 315 ASTTPVFGNNFFDSKFSSSTASSTSSFPVLRPFVPSLVARKNTIKRGTMGLVNLGNTCFM 374

Query: 288 NSAIQCLVHTPEFARYFRED-YRREINWQNPLGM-------------------------- 320
           NSA+QC+ HT E   YF    YR E+N  NPLGM                          
Sbjct: 375 NSALQCMAHTQEVTEYFLTGVYRDELNPSNPLGMGGAIAEAFGSLLQRLWETTGSSIAPR 434

Query: 321 ---------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEV-- 357
                                 ELLAFLLDGLHEDLNRV  KPY+++ D +G  ++E+  
Sbjct: 435 DFKSALQRFAPQFIGYQQHDTQELLAFLLDGLHEDLNRVLKKPYVENPDWEGGGEQELIQ 494

Query: 358 -ADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMT 416
            A   W  ++ RNDSIIVD+ QGQYKSTLVCP C+KVS+TFDPFMYL+LPL        T
Sbjct: 495 LARTTWEGYMKRNDSIIVDLFQGQYKSTLVCPECSKVSITFDPFMYLTLPLPVDRRWQHT 554

Query: 417 VTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDD 476
           +     D    P    V +  +   RDL   LG   S+ +   L VAEI +H I +  +D
Sbjct: 555 IHFIPYDVQKKPLKVPVDLSGNATMRDLKATLGRWLSV-EPPNLFVAEIWSHKIYKLYED 613

Query: 477 PLISLSTIKDDDHLAAYRVPKLVKKA---------VFLQLIHRLQEQEPGAAQTTSQWKA 527
             + ++ +   D +  Y +P  V  +         + + + HR+   +P    T      
Sbjct: 614 ASM-VTEVSKGDTIVVYELPCRVNASKKDSHPEDHIIVPVYHRI--AKPSRYTTYQSNDY 670

Query: 528 YGTPLVSSISRDDV 541
           +G P++++ + ++ 
Sbjct: 671 FGHPIITAFTAEEA 684



 Score =  159 bits (401), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 76/188 (40%), Positives = 115/188 (61%), Gaps = 19/188 (10%)

Query: 657  HFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKL 716
             F+   LE  +     KK R   L+L  CL+ F REE L  +D+WYCP+CK+ +QA+KK 
Sbjct: 863  EFMHPELEELRIAAEAKKKRL--LNLDDCLDEFTREEMLGEDDLWYCPRCKKHQQATKKF 920

Query: 717  DLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRR--------- 767
            +LW++P++LV+HLKRFS SR ++ K++TFV+FPI   +L   V  + + +          
Sbjct: 921  ELWKMPDILVVHLKRFSNSRMLRDKIDTFVDFPIEGLDLEARVGERTALKSLATQGVEVP 980

Query: 768  --------QLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAA 819
                     +Y+LYA+  H GG+G GHY A+ K  +++ WY+FDDSH+S     +  ++ 
Sbjct: 981  GDVDLDEPLVYDLYAVDEHMGGLGGGHYRAYAKNPEDDLWYHFDDSHVSRCEAKESVNSN 1040

Query: 820  AYVLFYRR 827
            AY+LFYRR
Sbjct: 1041 AYLLFYRR 1048


>gi|412988619|emb|CCO17955.1| unnamed protein product [Bathycoccus prasinos]
          Length = 1264

 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 128/339 (37%), Positives = 164/339 (48%), Gaps = 63/339 (18%)

Query: 246 STSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFR 305
           S S  LAS +   N + +     +  S G  GL NLGNTCFMNSA+QCL HT      F 
Sbjct: 483 SHSFGLASPK---NDVETDRAKQKHGSRGKAGLQNLGNTCFMNSALQCLSHTSMLTDAFL 539

Query: 306 ED-YRREINWQNPLGM-------------------------------------------- 320
            + Y  +IN  NP+GM                                            
Sbjct: 540 SNAYVEDINEDNPIGMGGKLAKEYAKLITALWRDGAVSVAPRAFKSALAKFAPQFSGYNQ 599

Query: 321 ---VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVC 377
               ELLAFLLDGLHEDLNRVK KPY++ KDA GR D +VA E+W NH+ARN+S IVD  
Sbjct: 600 QDAQELLAFLLDGLHEDLNRVKVKPYVEEKDATGRTDADVAKEHWENHLARNNSRIVDAF 659

Query: 378 QGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSAL-PSTYTVTVP 436
           QGQYKSTLVCP C   SV FDPFMYL++PL  T  R + VT+   D   L P    V V 
Sbjct: 660 QGQYKSTLVCPDCENRSVKFDPFMYLTVPLPTTRERELKVTILFCDQPGLKPMKVVVVVD 719

Query: 437 KHGRCRDLIQVLGNICSLKQSEELK----------VAEIQNHSIQRFLDDPLISLSTIKD 486
             G  +DL + L    + +  E++           +A+I    + +F D     L  I D
Sbjct: 720 NEGSVKDLEKNLFETLAGEIEEDIGEISDSTHRWVIADIFKAKVYKFFDSD-AKLREISD 778

Query: 487 DDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQW 525
            D + AY +PK  +     +L   +  ++P A  T S +
Sbjct: 779 KDVVFAYCLPKTKENKNEDELFALVCHRKPLAQATKSPY 817



 Score =  159 bits (402), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 76/179 (42%), Positives = 118/179 (65%), Gaps = 14/179 (7%)

Query: 660  ENLLEVFKN--GPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLD 717
            ++LLE  K   GP T   +T PLS   C+E F++EEPL  +DMWYC +CK+   A   ++
Sbjct: 1019 DSLLEFEKRNLGPATAVKKT-PLS--ACMEHFIKEEPLGEDDMWYCGKCKKHVPAKCSMN 1075

Query: 718  LWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA--------NKNSSRRQL 769
            +WR P +L++HLKRFSYSRS + K++  +++P+ DF+++ ++A        + +  +  +
Sbjct: 1076 IWRAPPILILHLKRFSYSRSWRDKIDVKIDYPLEDFDISPFIAEDALFFDEDSDLPKSTV 1135

Query: 770  YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVK-SAAAYVLFYRR 827
            Y+LYA+ NHYG MG GHYTA+ K  +   W+++DDS   PI+ + V+ S A YVLFY+R
Sbjct: 1136 YDLYAVVNHYGSMGGGHYTAYAKHAESGSWHSYDDSTCRPIDVNSVQESNAGYVLFYKR 1194


>gi|170028244|ref|XP_001842006.1| ubiquitin carboxyl-terminal hydrolase 43 [Culex quinquefasciatus]
 gi|167871831|gb|EDS35214.1| ubiquitin carboxyl-terminal hydrolase 43 [Culex quinquefasciatus]
          Length = 1083

 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 174/657 (26%), Positives = 274/657 (41%), Gaps = 136/657 (20%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNP--------------- 317
           G+ GL N GNTCFMN+ +QCL HT   A YF  D Y+ ++  +N                
Sbjct: 152 GVIGLRNHGNTCFMNAVLQCLSHTDILAEYFVLDQYKADLKRRNKINAKKFGTKGELTEQ 211

Query: 318 LGMV-------------------------------------ELLAFLLDGLHEDLNRVKH 340
           L +V                                     E L +LLD +HEDLN    
Sbjct: 212 LALVLKSLWTCKDAPEYSSSFKAVVDRYGSQFRSSTQHDAQEFLFWLLDKVHEDLNTASK 271

Query: 341 KPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPF 400
           + Y   K+  GR DE +A E  ANHI  N+S +  V Q Q++S+L CP C+K S TFDPF
Sbjct: 272 RKYKTIKNNYGRSDEVIAAETLANHIRCNNSFVQAVFQAQFRSSLTCPRCHKQSNTFDPF 331

Query: 401 MYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEEL 460
             +S+ L   T + + V V  +          + VP HG   + ++   +  +    E +
Sbjct: 332 HCISVQLPQLTLQPVLVRVIYASQQPKQVQLGLGVP-HGSLVEGLREQLHADTGIAGERM 390

Query: 461 KVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQ 520
            +AEI      R   D  +  S    D  +     P + +    + L      ++ G+ +
Sbjct: 391 ILAEICESGFNRVYCDSHLVASVGDGDGTVYCIESPVVGEGMTQIVLCISNARRDVGSGE 450

Query: 521 TTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVD 580
                + +GTP    +SRD  +S  ++Q  + + +S  LK E    +        +   D
Sbjct: 451 V----RRFGTPFCLVVSRD--VSYVELQKLLLKEMSGILKSEVFAFSTPVQEMFRMRLQD 504

Query: 581 PSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSI 640
           PS +A           DA    +V  P L  +++D       LSV     +   +    +
Sbjct: 505 PSCDA-----------DAFLETSVEHP-LFTEMID-----LALSV-----LPTDAGPAHV 542

Query: 641 VVYVDW--SQKLLEKYNTHFLEN-LLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVP 697
            + ++W   ++        F+E+  +   K+    K   +  L+L  CLE + + E L  
Sbjct: 543 KLLIEWVNPERFFSDMTDPFVEHESVSQMKD----KIPASSSLTLEQCLEHYTKAETLSA 598

Query: 698 EDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSR---SMKHKLETFVNFPIHDFN 754
           ED W CP C++     K L LW LP+++VIH KRF   +   +   KL T V FP+H F+
Sbjct: 599 EDAWRCPHCQKYLPVVKTLGLWSLPDIMVIHFKRFRQQQLRGTQAAKLTTLVKFPLHGFD 658

Query: 755 LTKYVA-----------------------NKNSSRRQL----------------YELYAL 775
           +T ++A                        K + R  +                Y+LYA+
Sbjct: 659 MTPHLARELNAEASTGGTNGTTEDNWSPWRKTTKRNPVHQHSNNQFPHHMMDNRYDLYAV 718

Query: 776 TNHYGG-MGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSA----AAYVLFYRR 827
             H G  + +GHYTA  K   +  WY FDD  ++ ++ D ++       AY+LFY+R
Sbjct: 719 CYHQGDTLETGHYTAACKNPYDANWYKFDDQRVNQVSSDRIQEEIVNNEAYILFYQR 775


>gi|40788175|emb|CAE47744.2| ubiquitin specific proteinase 43 [Homo sapiens]
          Length = 1124

 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 172/655 (26%), Positives = 274/655 (41%), Gaps = 144/655 (21%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHT---PEF---ARYFREDYRREIN-------------- 313
           G  GL N GNTCFMN+ +QCL +T    EF    RY     R E+               
Sbjct: 99  GAQGLKNHGNTCFMNAVVQCLSNTDLLAEFLALGRYRAAPGRAEVTEQLAALVRALWTRE 158

Query: 314 ---------WQNPLG-------------MVELLAFLLDGLHEDLNRVKHKPYIKSKDADG 351
                    +QN +               +E L +LLD +HEDL      P  +    + 
Sbjct: 159 YTPQLSAEFFQNAVSKYGSQFQGNSQHDALEFLLWLLDRVHEDLEGSSRGPVSEQLPPEA 218

Query: 352 RPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATT 411
               E      A  +    S +    Q QY+S+L CP C K S TFDPF+ +SLP+    
Sbjct: 219 TKTSENCLSPSA-QLPLGQSFVQSHFQAQYRSSLTCPHCLKQSNTFDPFLCVSLPIPLRQ 277

Query: 412 TRTMTVT-VFTSD-------GSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVA 463
           TR ++VT VF S        G A+P   TV        R ++   G +     ++E+ + 
Sbjct: 278 TRFLSVTLVFPSKSQRFLRVGLAVPILSTVAA-----LRKMVAEEGGV----PADEVILV 328

Query: 464 EIQNHSIQR-FLDDPLISLSTIKDDDHLAAYRVPK------LVKKAVFLQLIHRLQEQEP 516
           E+     QR F D+    L+TI + D++ A++VP       L    + L    RL  +E 
Sbjct: 329 ELYPSGFQRSFFDE--EDLNTIAEGDNVYAFQVPPSPSQGTLSAHPLGLSASPRLAAREG 386

Query: 517 ---------------------GAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRML 555
                                G+ Q  S+   +G P +  I  D  +S  ++Q ++   +
Sbjct: 387 QRFSLSLHSESKVLILFCNLVGSGQQASR---FGPPFL--IREDRAVSWAQLQQSILSKV 441

Query: 556 SPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVD 615
              +K E+ +                      N  S  +      S A +     L   D
Sbjct: 442 RHLMKSEAPVQ---------------------NLGSLFSIRVVGLSVACSY----LSPKD 476

Query: 616 ESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEK-YNTHFLENLLEVFKNGPVTKK 674
              +C   +V+    +R P     + + V+W   + E+ + +   E   +        + 
Sbjct: 477 SRPLC-HWAVDRVLHLRRPGGPPHVKLAVEWDSSVKERLFGSLQEERAQDADSVWQQQQA 535

Query: 675 ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            +    +L  C + + +EE L  +D W CP C+  +Q   KL LW LP++L+IHLKRF  
Sbjct: 536 HQQHSCTLDECFQFYTKEEQLAQDDAWKCPHCQVLQQGMVKLSLWTLPDILIIHLKRFCQ 595

Query: 735 SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQ----------------------LYEL 772
               ++KL T V FP+   N+  +VA +++S                         LY+L
Sbjct: 596 VGERRNKLSTLVKFPLSGLNMAPHVAQRSTSPEAGLGPWPSWKQPDCLPTSYPLDFLYDL 655

Query: 773 YALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           YA+ NH+G +  GHYTA+ +   + +WY++DDS + P+ ED+V +  AY+LFY++
Sbjct: 656 YAVCNHHGNLQGGHYTAYCRNSLDGQWYSYDDSTVEPLREDEVNTRGAYILFYQK 710


>gi|301608620|ref|XP_002933869.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 32-like [Xenopus
           (Silurana) tropicalis]
          Length = 1597

 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 161/543 (29%), Positives = 235/543 (43%), Gaps = 145/543 (26%)

Query: 36  KRPSGIDNSDLVNDATAEDP-----GAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGP 90
           ++P  IDN  LV   T + P     G   +   +LL G+DY ++P+ VW  L+ WYG   
Sbjct: 515 QKPGAIDNQPLVTQETVKVPSLTLEGGRLKQSPSLLRGKDYEIVPEPVWRALYHWYGANL 574

Query: 91  TLARKVISSGLSQTELA-VEVYPLRLQLL---VMPRGECSTIRI---------------- 130
           +L R VI +   +T+L  +E++P  L  L    + R + S I +                
Sbjct: 575 SLPRPVIKN--CKTDLPELELFPRYLLFLRQQPVTRQQQSNIWVNMGNVPSPNAPLKRVL 632

Query: 131 ------SKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQ 184
                 S+ +TI E+H        +  E + +W Y       L++             D+
Sbjct: 633 AYTGCFSRMQTIKEIHEYLSQRLRIKEEDMRLWLYNSENYLTLLD-------------DE 679

Query: 185 DILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSE 244
           D  +E L           IQD          +++E     +S     S    +S+    +
Sbjct: 680 DHTLEGL----------KIQDE-------QHLVIEVRNKDMSWPEEMSFIANSSKIDRHK 722

Query: 245 ISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF 304
           + T                          G TGL NLGNTCFMNS+IQC+ +T    +YF
Sbjct: 723 VPTEK------------------------GATGLSNLGNTCFMNSSIQCVSNTQPLTKYF 758

Query: 305 ---REDYRREINWQNPLGMV---------------------------------------- 321
              R  Y  E+N  NP+GM                                         
Sbjct: 759 ISGRHLY--ELNRTNPIGMKGHMAKCYGDLVQELWSGTQKNVAPLKLRWTIAKYAPRFNG 816

Query: 322 -------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIV 374
                  ELLAFLLDGLHEDLNRV  KPY++ KD+DGRPD EVA E W NH+ RN SI+V
Sbjct: 817 FQQQDSQELLAFLLDGLHEDLNRVHDKPYVELKDSDGRPDWEVAAEAWDNHLRRNKSIVV 876

Query: 375 DVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVT 434
           D+  GQ +S + C  C  +SV FDPF +LSLPL   +   + +TV   DG+  P  Y + 
Sbjct: 877 DLFHGQLRSQVKCKTCGHISVRFDPFNFLSLPLPMDSYMHLEITVIKLDGTT-PVRYGLR 935

Query: 435 VPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF-LDDPLISLSTIKDDDHLAAY 493
           +    +   L + L ++C LK  E++ +AE+   +I+ F  D+  + LS       L A+
Sbjct: 936 LNMDEKYTGLKKQLSDLCGLK-PEQILLAEVHGSNIKNFPQDNQKVRLSV---SGFLCAF 991

Query: 494 RVP 496
            +P
Sbjct: 992 EIP 994



 Score = 92.8 bits (229), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 48/128 (37%), Positives = 76/128 (59%), Gaps = 2/128 (1%)

Query: 642  VYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
            + VDW    L  +Y T   E ++E  ++   +++A+ EP++L +CL AF  EE L  ++M
Sbjct: 1191 IAVDWDPTALHLRYQTS-QERIVEEHESVEQSRRAQAEPINLDSCLRAFTSEEELGEDEM 1249

Query: 701  WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
            +YC +CK    A+KKLDLWRLP +L+IHLKRF +      K +  V FP  +F+ + ++ 
Sbjct: 1250 YYCSKCKTHCLATKKLDLWRLPPILIIHLKRFQFVNGRWIKSQKIVKFPRENFDPSAFLV 1309

Query: 761  NKNSSRRQ 768
             K   + Q
Sbjct: 1310 PKGPIQYQ 1317



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 38/59 (64%), Gaps = 1/59 (1%)

Query: 769  LYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            +Y LYA++ H G +G GHY  + K  +  +WY ++DS    ++ D++ + +AY+LFY +
Sbjct: 1502 IYNLYAISCHSGILGGGHYVTYAKNPNA-KWYCYNDSSCKELHPDEIDTDSAYILFYEQ 1559


>gi|198433558|ref|XP_002125579.1| PREDICTED: similar to ubiquitin specific protease 32 [Ciona
            intestinalis]
          Length = 1588

 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 163/531 (30%), Positives = 243/531 (45%), Gaps = 100/531 (18%)

Query: 41   IDNSDLVND----ATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKV 96
            I+NSD++ +    AT  D G    + + L+EG+D+I+LP +VW  LH WYGG P+L R +
Sbjct: 508  INNSDILLEESKVATLTDEGG--RLKEGLVEGQDFIVLPAQVWKALHHWYGGSPSLPR-I 564

Query: 97   ISSGLSQTELAVEVYPLRLQLL--VMPRG--ECSTIRISKKETIGELHRRACSIFYLNLE 152
            + +     +  +E++ L + LL   MP    + S +       +  +   A  +   +L 
Sbjct: 565  VPAPNKDEKCWIELHRLNVLLLRHQMPSSMQQLSQVAFPSNAPLSSVGNTAFGMLKQSLN 624

Query: 153  QIC--------IWDYYGHRKHALMNDMDRTLD-DANIQMDQDILVEVLDNVNGTNCK-SS 202
             +         I       K   +  + + L     I +D   L  +LD  N T  +  S
Sbjct: 625  YVTGGSTPKRQITHRATFSKRHTVGQVAQFLSLRLRIPLDSMRLWHLLDENNATLLEDDS 684

Query: 203  IQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLG 262
            ++    +    +  L+E     +S     S     +RNH  +  T P +          G
Sbjct: 685  VKMEALSLTNNAQFLLEVRNVDMSWPEELSQ---IARNHKQK--TKPLMPVV------AG 733

Query: 263  SSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV 321
            +SG++            NLGNTCFMNS +QC+ +T    +YF E+ +  E+N  NPLGM 
Sbjct: 734  ASGLS------------NLGNTCFMNSGLQCISNTRPLTKYFLENKHLFELNRTNPLGMK 781

Query: 322  -----------------------------------------------ELLAFLLDGLHED 334
                                                           ELLAFLLDGLHED
Sbjct: 782  GHIAKRYCDLTQELWSGASKTVAPLKLRWTISKYAPRFNGFSQHDSQELLAFLLDGLHED 841

Query: 335  LNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVS 394
            LNRV+ KPY++ KD+DGRPDEEVA E W NH+ARN SIIVD+  GQ +S + C  CN  S
Sbjct: 842  LNRVQTKPYVELKDSDGRPDEEVAQEAWENHLARNQSIIVDLFHGQIRSRVRCLHCNAFS 901

Query: 395  VTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSL 454
              FDPF +LSLPL    +  + V V   DG  +P  + + +       ++ + L   C +
Sbjct: 902  TRFDPFTFLSLPLPMDNSMYLDVIVIRLDGE-IPVRFGLRLNMDDTFVEVRKHLAEKCKI 960

Query: 455  KQSEELKVAEIQNHSIQRFLDDPLI--SLSTIKDDDHLAAYRVPKLVKKAV 503
               E + ++E+   +I+ FL D L   SLS      ++ AY +P  VK  V
Sbjct: 961  SM-EAVLLSEVLGATIKSFLQDNLKVRSLSI----GNIYAYEIPPPVKAIV 1006



 Score = 79.3 bits (194), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 67/130 (51%)

Query: 634  PSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREE 693
            P   TS  + +DW    L        E +L+   +     +   + + L  CL AF  EE
Sbjct: 1273 PWQQTSGHISIDWDPTALHLRYQPSAERVLKDDASVEEGHRGAQQRIDLNHCLRAFTTEE 1332

Query: 694  PLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDF 753
             L  +++++C +CK R+ A KKLD+WRLP  L+IHLKRF +      K    V+FP  DF
Sbjct: 1333 ELGKDELYHCGKCKTRQLAKKKLDIWRLPPTLIIHLKRFQFVNGRWIKSHKVVDFPKTDF 1392

Query: 754  NLTKYVANKN 763
            + + ++  ++
Sbjct: 1393 DPSSFMTKRD 1402



 Score = 59.7 bits (143), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%)

Query: 769  LYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            LY+LYA++ H G +G GHY A+ K    N+WY ++DS    ++ D++    AY LFY R
Sbjct: 1492 LYDLYAVSCHSGILGGGHYIAYAKNKVNNKWYCYNDSSCKEVSADNICVETAYTLFYER 1550


>gi|194217681|ref|XP_001918201.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 43-like [Equus
           caballus]
          Length = 1230

 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 168/640 (26%), Positives = 278/640 (43%), Gaps = 115/640 (17%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHT---PEF---ARYFREDYRREIN-------------- 313
           G  GL N GNTCFMN+ +QCL +T    EF    RY     R E+               
Sbjct: 194 GAQGLKNHGNTCFMNAVVQCLSNTDLLAEFLALGRYRAAPGRAEVTEQLAALVRALWTRE 253

Query: 314 --------WQNPLG-------------MVELLAFLLDGLHEDLNRVKHKPYIKSKDADGR 352
                   ++N +               +E L +LLD +HEDL      P  +    +  
Sbjct: 254 YTPQLSAEFKNAVSKYGSQFQGNSQHDALEFLLWLLDRVHEDLEGSSRGPGSEKLQPEAS 313

Query: 353 PDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTT 412
              E      A  ++   S +    Q QY+S+L CP C K S TFDPF+ +SLP+    T
Sbjct: 314 KTSENLLSPPA-QLSLGQSFVQSHFQAQYRSSLTCPHCRKQSNTFDPFLCVSLPIPLRQT 372

Query: 413 RTMTVTV--------FTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAE 464
           R ++VT+        F   G A+P   TV        R ++   G +      +E+ + E
Sbjct: 373 RFLSVTLVFLSKSQRFLRVGLAVPILSTVAA-----LRKMVAEEGGV----PVDEVILVE 423

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQ--T 521
           +    +QR F D+    L+TI + D + A++ P    + + L     L      AA+   
Sbjct: 424 LHPSGLQRSFFDE--EDLNTIAEGDSIYAFQAPPPTSRELLLARPPGLSVSPHLAAREGQ 481

Query: 522 TSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDP 581
            +   A+G   V  +   +V+ SG +Q++  R   PFL +E    +       +++ V  
Sbjct: 482 RASLPAHGENKVLLLF-CNVVGSG-LQAS--RFGPPFLMREDRTISWVQLQQCILSKV-- 535

Query: 582 SGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTI---------- 631
                      + K +A      ++    +++V  S  C  LS +  + +          
Sbjct: 536 ---------RYLMKSEAPIQNPGSM--FSIRVVGLSLACSYLSAQDGRPLCHWAVDRALH 584

Query: 632 -RIPSSSTSIVVYVDWSQKLLEK-YNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAF 689
            R P     + + V+W     E+ + +   E + +        +  +    +L  C + +
Sbjct: 585 LRRPGGPPHVKLAVEWDSGAKERLFGSLQEERVQDADSVWQQQQAHQQHSCTLDECFQFY 644

Query: 690 LREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFP 749
            +EE L  +D W CP CK  +Q   KL LW LP++L+IHLKRF      ++KL T V FP
Sbjct: 645 TKEEQLAQDDAWRCPHCKALQQGMVKLSLWTLPDILIIHLKRFCQVGERRNKLSTLVEFP 704

Query: 750 IHDFNLTKYVANKNSSRRQ----------------------LYELYALTNHYGGMGSGHY 787
           +   ++  +VA +++S +                       LY+LYA+ NH+G +  GHY
Sbjct: 705 LSGLDMAPHVAQRSTSPKPEPGPWPSWRQPACLPTSYPLDFLYDLYAVCNHHGSLQGGHY 764

Query: 788 TAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           TA+ +   + +WY++DDS + P+ ED+V +  AY+LFY++
Sbjct: 765 TAYCRNSLDGQWYSYDDSTVEPLPEDEVNTRGAYILFYQK 804


>gi|332251166|ref|XP_003274719.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 43 isoform 1
           [Nomascus leucogenys]
          Length = 1123

 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 168/654 (25%), Positives = 272/654 (41%), Gaps = 143/654 (21%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLV-------------------------------------- 295
           G  GL N GNTCFMN+ +QCL                                       
Sbjct: 99  GAQGLKNHGNTCFMNAVVQCLSNTDLLAEFLALGRYRAAPGRAEVTEQLAALVRALWTRE 158

Query: 296 HTPEFARYFR---EDYRREINWQNPLGMVELLAFLLDGLHEDLNRVKHKPYIKSKDADGR 352
           +TP+ +  F+     Y  +    +    +E L +LLD +HEDL      P  +    +  
Sbjct: 159 YTPQLSAEFKNAVSKYGSQFQGNSQHDALEFLLWLLDRVHEDLEGSSRGPVSEKLPPEAT 218

Query: 353 PDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTT 412
              E      A  +    S +    Q QY+S+L CP C K S TFDPF+ +SLP+    T
Sbjct: 219 KTSENCLSPSA-QLPLGQSFVQSHFQAQYRSSLTCPHCLKQSNTFDPFLCVSLPIPLRQT 277

Query: 413 RTMTVT-VFTSD-------GSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAE 464
           R ++VT VF S        G A+P   TV        R ++   G I     ++E+ + E
Sbjct: 278 RFLSVTLVFPSKSQRFLRVGLAVPILSTVAA-----LRKMVAEEGGI----PADEVILVE 328

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRVPK------LVKKAVFLQLIHRLQEQEP- 516
           +     QR F D+    L+TI + D++ A++VP       L    + L +  RL  +E  
Sbjct: 329 LYPSGFQRSFFDE--EDLNTIAEGDNVYAFQVPPSPSQGTLSAHPLGLSVSPRLVAREGQ 386

Query: 517 --------------------GAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLS 556
                               G+ Q  S+   +G P +  I  D  +S  ++Q ++   + 
Sbjct: 387 RFSLSLHSESKVLILFCNLVGSGQQASR---FGPPFL--IREDRAVSWAQLQQSILSKVR 441

Query: 557 PFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDE 616
             +K E+ +                      N  S  +      S A +     L   D 
Sbjct: 442 HLMKSEAPVQ---------------------NLGSLFSIRVVGLSVACSY----LSPKDS 476

Query: 617 SNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEK-YNTHFLENLLEVFKNGPVTKKA 675
             +C   +V+    +R P     + + V+W   + E+ + +   E   +        +  
Sbjct: 477 RPLC-HWAVDRVLHLRKPGGPPHVKLAVEWESSVKERLFGSLQEERAQDADSVWQQQQAH 535

Query: 676 RTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYS 735
           +    +L  C + + +EE L  +D W CP C+  +Q   KL LW LP++L+IHLKRF   
Sbjct: 536 QQHSCTLDECFQFYTKEEQLAQDDAWKCPHCQVLQQGMVKLSLWTLPDILIIHLKRFCQV 595

Query: 736 RSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQ----------------------LYELY 773
              ++KL T V FP+   N+  +VA +++S                         LY+LY
Sbjct: 596 GERRNKLSTLVKFPLSGLNMAPHVAQRSTSPEAGLGPWPSWKQPGCLPTSYPLDFLYDLY 655

Query: 774 ALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           A+ NH+G +  GHYTA+ +   + +WY++DDS + P+ ED+V +  AY+LFY++
Sbjct: 656 AVCNHHGNLQGGHYTAYCRNSLDGQWYSYDDSTVEPLREDEVNTRGAYILFYQK 709


>gi|449276706|gb|EMC85138.1| Ubiquitin carboxyl-terminal hydrolase 19 [Columba livia]
          Length = 1425

 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 121/293 (41%), Positives = 161/293 (54%), Gaps = 59/293 (20%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLGM------------ 320
           G TGL+NLGNTCFMNS IQ L +T E   YF +  +  EIN+ NPLG             
Sbjct: 582 GFTGLVNLGNTCFMNSVIQSLSNTRELRDYFHDRSFESEINYNNPLGTGGRLAIGFAMLL 641

Query: 321 -----------------------------------VELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 642 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 701

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC+KVS+TFDPF+YL +
Sbjct: 702 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCSKVSITFDPFLYLPV 761

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNIC-SLK-QSEELKVA 463
           PL     + +TV  F  +    P  + V++ K       ++VL ++  S++ + E L++A
Sbjct: 762 PL-PQKQKVLTVYYFAKEPHKKPIKFLVSISKEN--SSAMEVLDSVAHSVRVKPENLRLA 818

Query: 464 E-IQNHSIQRFLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           E I+NH  + FL  P  SL T+   D L  + V  P+L K + V LQ+  R Q
Sbjct: 819 EVIKNHFHRMFL--PSSSLDTVSPTDLLLCFEVLSPELAKERVVELQVQQRPQ 869



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 84/224 (37%), Positives = 130/224 (58%), Gaps = 13/224 (5%)

Query: 614  VDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTK 673
            +D +N    L  +GD  + +    +  +V+ +   + L+++     + L  V   G  ++
Sbjct: 1098 IDAANREHKLEDKGDTPLELTDDCSLALVWKN--NERLKEFVLVESKELECVEDPGSASE 1155

Query: 674  KARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFS 733
             AR    +L  CL  F + E L PE+ WYCP+CK+ R+ASK+L LWRLP VL+I LKRFS
Sbjct: 1156 AARAGHFTLEQCLNLFTKPEVLAPEEAWYCPKCKQHREASKQLMLWRLPNVLIIQLKRFS 1215

Query: 734  YSRSM--KHKLETFVNFPIHDFNLTKY-VANKNSSRRQLYELYALTNHYGGMGSGHYTAH 790
            + RS   + K+   V+FP+   +L+K+ +  K   +  +Y+LYA+ NHYGGM  GHYTA+
Sbjct: 1216 F-RSFIWRDKINDMVDFPVRSLDLSKFCIGRKGEQQLPMYDLYAVINHYGGMIGGHYTAY 1274

Query: 791  IKLLDENR-------WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             +L ++         W  FDDS ++ ++E  V +  AYVLFYRR
Sbjct: 1275 ARLPNDKNSQRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRR 1318


>gi|449479877|ref|XP_002196656.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 32 [Taeniopygia
           guttata]
          Length = 1557

 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 158/543 (29%), Positives = 237/543 (43%), Gaps = 145/543 (26%)

Query: 36  KRPSGIDNSDLVND-----ATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGP 90
           ++P  IDN  LV       A+    G   +    L+EG+DY+++P+ VW  L+ WYG   
Sbjct: 478 QKPGAIDNQPLVTQEPVKAASLTMEGGRLKRSPQLVEGKDYVMVPEPVWRALYHWYGANL 537

Query: 91  TLARKVISSGLSQTELA-VEVYPLRLQLLV------------------MPRGECSTIRI- 130
           +L R VI +  S+T +  +E++P  L  L                   +P       R+ 
Sbjct: 538 SLPRPVIKN--SKTNVPELELFPRYLLFLRQQPATRTQQSNVWVNMGNVPSPNAPLKRVL 595

Query: 131 ------SKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQ 184
                 S+ +TI E+H        +  E + +W Y       L++D D  L+   IQ +Q
Sbjct: 596 AYTGCFSRMQTIKEIHEYLSQRLRIKEEDMRLWLYNSENYLTLLDDEDHRLEYLKIQDEQ 655

Query: 185 DILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSE 244
            +++EV +           +D  + E+                    S    +S+    +
Sbjct: 656 HLVIEVRN-----------KDMSWPEEM-------------------SFIANSSKIDRHK 685

Query: 245 ISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF 304
           + T              G++G++  G            NTCFMNS+IQC+ +T    RYF
Sbjct: 686 VPTEK------------GATGLSNLG------------NTCFMNSSIQCVSNTQPLTRYF 721

Query: 305 ---REDYRREINWQNPLGMV---------------------------------------- 321
              R  Y  E+N  NP+GM                                         
Sbjct: 722 ISGRHLY--ELNRTNPIGMKGHMAKCYGDLVQELWSGTQKNIAPLKLRWTIAKYAPRFNG 779

Query: 322 -------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIV 374
                  ELLAFLLDGLHEDLNRV  KPY++ KD+DGRPD EVA E W NH+ RN SI+V
Sbjct: 780 FQQQDSQELLAFLLDGLHEDLNRVHDKPYVELKDSDGRPDWEVAAEAWENHLRRNRSIVV 839

Query: 375 DVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVT 434
           D+  GQ KS + C  C  +SV FDPF +LSLPL   +   + +TV   DG+  P  Y + 
Sbjct: 840 DLFHGQLKSQVKCKTCGHISVRFDPFNFLSLPLPMDSYMHLEITVIKLDGTT-PVRYGLR 898

Query: 435 VPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF-LDDPLISLSTIKDDDHLAAY 493
           +    +   L + L  +C LK  E++ +AE+ + +I+ F  D+  + LS       L A+
Sbjct: 899 LNMDEKYTGLKKQLSELCGLK-PEQILLAEVHSSNIKNFPQDNQKVRLSV---SGFLCAF 954

Query: 494 RVP 496
            +P
Sbjct: 955 EIP 957



 Score = 95.9 bits (237), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 80/135 (59%), Gaps = 2/135 (1%)

Query: 639  SIVVYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVP 697
            S  + VDW    L  +Y T   E ++E  ++   +++A+ EP++L +CL AF  EE L  
Sbjct: 1151 SAYIAVDWDPTALHLRYQTS-QERIVEEHESVEQSRRAQAEPINLDSCLRAFTSEEELGE 1209

Query: 698  EDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTK 757
            ++M+YC +CK    A+KKLDLWRLP +L+IHLKRF +      K +  V FP  +F+ + 
Sbjct: 1210 DEMYYCSKCKTHCLATKKLDLWRLPPILIIHLKRFQFVNGRWIKSQKIVKFPRENFDPSA 1269

Query: 758  YVANKNSSRRQLYEL 772
            ++  ++ S  Q  +L
Sbjct: 1270 FLVQRDPSHFQRKQL 1284



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 39/59 (66%), Gaps = 1/59 (1%)

Query: 769  LYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            +Y LYA++ H G MG GHY  + K  + N+WY ++DS    ++ D++ + +AY+LFY +
Sbjct: 1462 IYNLYAISCHSGIMGGGHYVTYAKNPN-NKWYCYNDSSCKELHPDEIDTDSAYILFYEQ 1519


>gi|26339726|dbj|BAC33526.1| unnamed protein product [Mus musculus]
          Length = 366

 Score =  193 bits (491), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 123/322 (38%), Positives = 161/322 (50%), Gaps = 60/322 (18%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV----------- 321
           G+ GL NLGNTCFMNSA+QCL + P+   YF  + Y  E+N++NPLGM            
Sbjct: 33  GICGLTNLGNTCFMNSALQCLSNVPQLTEYFLNNRYLEELNFRNPLGMKGELAEAYADLV 92

Query: 322 ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                               ELL+FLLDGLHEDLNRVK K Y++
Sbjct: 93  KQTWSGYHRSIVPNVFKNKVGHFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVE 152

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
             +  GRPD EVA E W NH  RNDS+IVD   G +KSTLVCP C  VSVTFDPF YLS+
Sbjct: 153 LCNGAGRPDLEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSV 212

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
           PL   + R + V     D    P  + V VPK G   DL   L    S+   +++ VA++
Sbjct: 213 PLPVCSRRVLEVFFVPMDPRRKPEQHRVVVPKKGNISDLCVALSTHTSVA-PDKMIVADV 271

Query: 466 QNHSIQRF--LDDPLISLSTIKDDDHLAAYRVPKLVKKAVF----LQLIHRLQEQEPGAA 519
            +H   +   L+DP   LS I D D +  Y V   ++        + +   L+E+ P   
Sbjct: 272 FSHRFYKLYQLEDP---LSGILDRDDIFVYEVTGRIEPVEGSRDDIVVPVYLRERTPSRD 328

Query: 520 QTTSQWK--AYGTPLVSSISRD 539
              S +    +G PL+ S+ RD
Sbjct: 329 YNNSYYGLILFGHPLLVSVPRD 350


>gi|338710993|ref|XP_001503831.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 32 [Equus
           caballus]
          Length = 1605

 Score =  193 bits (491), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 165/561 (29%), Positives = 239/561 (42%), Gaps = 151/561 (26%)

Query: 18  GDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAED-----PGAGPEIVDTLLEGRDYI 72
           G   ++L H N       ++P  IDN  LV     +       G   +    L+ GRDY 
Sbjct: 508 GANGNILLHLNP------QKPGAIDNQPLVTQEPVKATSLTLEGGRLKRTPQLIHGRDYE 561

Query: 73  LLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELA-VEVYP---LRLQLLVMPRGECSTI 128
           ++P+ VW  L+ WYG    L R VI +  S+TE+  +E++P   L L+     R + S I
Sbjct: 562 MVPEPVWRALYHWYGANLALPRPVIKN--SKTEIPELELFPRYLLFLRQQPATRTQQSNI 619

Query: 129 RI----------------------SKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHA 166
            +                      S+ +TI E+H        +  E + +W Y       
Sbjct: 620 WVNMGNVPSPNAPLKRVLAYTGCFSRMQTIKEIHEYLSQRLRIKEEDMRLWLYNSENYLT 679

Query: 167 LMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLS 226
           L++             D+D  +E L           IQD          +++E     +S
Sbjct: 680 LLD-------------DEDHRLEYL----------KIQDE-------QHLVIEVRNKDMS 709

Query: 227 IAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCF 286
                S    +S+    ++ T                          G TGL NLGNTCF
Sbjct: 710 WPEEMSFIANSSKIDRHKVPTEK------------------------GATGLSNLGNTCF 745

Query: 287 MNSAIQCLVHTPEFARYF---REDYRREINWQNPLGMV---------------------- 321
           MNS+IQC+ +T    +YF   R  Y  E+N  NP+GM                       
Sbjct: 746 MNSSIQCVSNTQPLTQYFISGRHLY--ELNRTNPIGMKGHMAKCYGDLVQELWSGTQKNV 803

Query: 322 -------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEE 356
                                    ELLAFLLDGLHEDLNRV  KPY++ KD+DGRPD E
Sbjct: 804 APLKLRWTIAKYAPRFNGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVELKDSDGRPDWE 863

Query: 357 VADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMT 416
           VA E W NH+ RN SI+VD+  GQ +S + C  C  +SV FDPF +LSLPL   +   + 
Sbjct: 864 VAAEAWDNHLRRNRSIVVDLFHGQLRSQVKCKTCGHISVRFDPFNFLSLPLPMDSYMHLE 923

Query: 417 VTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF-LD 475
           +TV   DG+  P  Y + +    +   L + L ++C LK SE++ +AE+   +I+ F  D
Sbjct: 924 ITVIKLDGTT-PVRYGLRLNMDEKYTGLKKQLSDLCGLK-SEQILLAEVHGSNIKNFPQD 981

Query: 476 DPLISLSTIKDDDHLAAYRVP 496
           +  + LS       L A+ +P
Sbjct: 982 NQKVRLSV---SGFLCAFEIP 999



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 74/125 (59%), Gaps = 2/125 (1%)

Query: 642  VYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
            + VDW    L  +Y T   E +++  ++   +++A+ EP++L +CL AF  EE L   +M
Sbjct: 1196 IAVDWDPTALHLRYQTS-QERVVDEHESVEQSRRAQAEPINLDSCLRAFTSEEELGENEM 1254

Query: 701  WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
            +YC +CK    A+KKLDLWRLP VL+IHLKRF +      K +  V FP   F+ + ++ 
Sbjct: 1255 YYCSKCKTHCLATKKLDLWRLPPVLIIHLKRFQFVNGRWIKSQKIVKFPRESFDPSAFLV 1314

Query: 761  NKNSS 765
             ++ +
Sbjct: 1315 PRDPA 1319



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 40/61 (65%), Gaps = 1/61 (1%)

Query: 767  RQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYR 826
            + +Y LYA++ H G +G GHY  + K  + ++WY ++DS    ++ D++ + +AY+LFY 
Sbjct: 1508 KPIYNLYAISCHSGILGGGHYVTYAKNPN-SKWYCYNDSSCKELHPDEIDTDSAYILFYE 1566

Query: 827  R 827
            +
Sbjct: 1567 Q 1567


>gi|344285327|ref|XP_003414413.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 32 [Loxodonta
            africana]
          Length = 1617

 Score =  193 bits (491), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 165/561 (29%), Positives = 240/561 (42%), Gaps = 151/561 (26%)

Query: 18   GDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAED-----PGAGPEIVDTLLEGRDYI 72
            G   ++L H N       ++P  IDN  LV     +       G   +    L+ GRDY 
Sbjct: 520  GSNGNILLHLNP------QKPGAIDNQPLVTQEPVKATSLTLEGGRLKRTPQLIHGRDYE 573

Query: 73   LLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELA-VEVYP---LRLQLLVMPRGECSTI 128
            ++P+ VW  L+ WYG    L R VI +  S+T++  +E++P   L L+     R + S I
Sbjct: 574  MVPEPVWRALYHWYGANLALPRPVIKN--SKTDIPELELFPRYLLFLRQQPATRTQQSNI 631

Query: 129  RI----------------------SKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHA 166
             +                      S+ +TI E+H        +  E + +W Y       
Sbjct: 632  WVNMGNVPSPNAPLKRVLAYTGCFSRMQTIKEIHEYLSQRLRIKEEDMRLWLYNSENYLT 691

Query: 167  LMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLS 226
            L++             D+D  +E L           IQD          +++E     +S
Sbjct: 692  LLD-------------DEDHRLEYL----------KIQDE-------QHLVIEVRNKDMS 721

Query: 227  IAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCF 286
                 S    +S+    ++ T                          G TGL NLGNTCF
Sbjct: 722  WPEEMSFIANSSKIDRHKVPTEK------------------------GATGLSNLGNTCF 757

Query: 287  MNSAIQCLVHTPEFARYF---REDYRREINWQNPLGMV---------------------- 321
            MNS+IQC+ +T    RYF   R  Y  E+N  NP+GM                       
Sbjct: 758  MNSSIQCVSNTQPLTRYFISGRHLY--ELNRTNPIGMKGHMAKCYGDLVQELWSGTQKNV 815

Query: 322  -------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEE 356
                                     ELLAFLLDGLHEDLNRV  KPY++ KD+DGRPD E
Sbjct: 816  APLKLRWTIAKYAPRFNGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVELKDSDGRPDWE 875

Query: 357  VADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMT 416
            VA E W NH+ RN SI+VD+  GQ +S + C  C  +SV FDPF +LSLPL   +   + 
Sbjct: 876  VAAEAWDNHLRRNRSIVVDLFHGQLRSQVKCKTCGHISVRFDPFNFLSLPLPMDSYMHLE 935

Query: 417  VTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF-LD 475
            +TV   DG+  P  Y + +    +   L + L ++C LK S+++ +AE+ + +I+ F  D
Sbjct: 936  ITVIKLDGTT-PVRYGLRLNMDEKYTGLKKQLSDLCGLK-SDQILLAEVHSSNIKNFPQD 993

Query: 476  DPLISLSTIKDDDHLAAYRVP 496
            +  I LS       L A+ +P
Sbjct: 994  NQKIRLSV---SGFLCAFEIP 1011



 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 74/125 (59%), Gaps = 2/125 (1%)

Query: 642  VYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
            + VDW    L  +Y T   E +L+  ++   +++A+ EP++L +CL AF  EE L   +M
Sbjct: 1208 IAVDWDPTALHLRYQTS-QERVLDEHESVEQSRRAQAEPINLDSCLRAFTSEEELGENEM 1266

Query: 701  WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
            +YC +CK    A+KKLDLWRLP +L+IHLKRF +      K +  V FP   F+ + ++ 
Sbjct: 1267 YYCSKCKTHCLATKKLDLWRLPPILIIHLKRFQFVNGRWIKSQKIVKFPRESFDPSAFLV 1326

Query: 761  NKNSS 765
             ++ +
Sbjct: 1327 PRDPA 1331



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 40/61 (65%), Gaps = 1/61 (1%)

Query: 767  RQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYR 826
            + +Y LYA++ H G +G GHY  + K  + ++WY ++DS    ++ D++ + +AY+LFY 
Sbjct: 1520 KPIYNLYAISCHSGILGGGHYVTYAKNPN-SKWYCYNDSSCKELHPDEIDTDSAYILFYE 1578

Query: 827  R 827
            +
Sbjct: 1579 Q 1579


>gi|336381122|gb|EGO22274.1| hypothetical protein SERLADRAFT_440291 [Serpula lacrymans var.
           lacrymans S7.9]
          Length = 1348

 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 165/524 (31%), Positives = 240/524 (45%), Gaps = 108/524 (20%)

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG-GGPTLARKVISSGLSQTELAVEVYPLRLQLLV 119
           +V +LLEG D   +PQ  W+ L +WYG    +L R VI+ G+   E  +E+ P RL+ L+
Sbjct: 176 VVSSLLEGVDVEFVPQHAWDALVTWYGEPSHSLPRTVIARGILH-EPVLELRPPRLKALL 234

Query: 120 M-------PRGECST-IRISKKETIGELHR---RACSI---FYLNLEQICIWDYYGHRKH 165
           +       P G     + +S   ++ EL     +A SI       + ++   D+ G +  
Sbjct: 235 LQDTPSEKPIGPPHPYVTMSTTGSVKELSTALVKAVSIRTNAAYRIWKVEPGDFDGLQYP 294

Query: 166 A---------LMNDMDRTLDDANIQMDQDILVEVLDNVN---------GTNCKSSI---- 203
           A         L++D D++L+DA I+ D   ++E  +N N          +N  SS+    
Sbjct: 295 AAKLAQDGAVLLDDNDQSLEDACIEPDDPFVIEFQENGNWIVDASRIPKSNASSSLASPN 354

Query: 204 --------QDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTS-RNHSSEISTSPNLASA 254
                    D+ F  +  + +    +  S    G  S+  GTS +   S+ +++ +  SA
Sbjct: 355 GVPPPLFSSDDDFFSRLGNKLPSAQASQSTPSPGASSSVNGTSIKPAKSQFNSAKSALSA 414

Query: 255 RDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREIN 313
                +L SS    +    G  GL N+GNTCFMNSA+QCL H  E   YF    Y+ E+N
Sbjct: 415 --PFQSLKSSKKAVQDP--GTLGLGNMGNTCFMNSALQCLAHLEELTDYFISGVYQDELN 470

Query: 314 WQNPLGM-------------------------------------------------VELL 324
             NPLGM                                                  EL+
Sbjct: 471 PDNPLGMHGAIAEAFGSLLQRIWATNSPSTSYSPREFKQQLQRFAPQFSGYQQHDSQELV 530

Query: 325 AFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVAD---EYWANHIARNDSIIVDVCQGQY 381
           AFLLDGLHEDLNRV  KPY++  D +G  D E+A    + W  ++ RNDS+IVD+ QGQY
Sbjct: 531 AFLLDGLHEDLNRVLKKPYVEKPDWEGGGDLELAQLAQKSWEGYMQRNDSVIVDLFQGQY 590

Query: 382 KSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRC 441
           +STLVCP C KVS+TFDPFMYL+LPL        TV     D S       V + +    
Sbjct: 591 QSTLVCPECQKVSITFDPFMYLTLPLPVQKKWRHTVFYVPWDISKPHVRVPVEIGRDASF 650

Query: 442 RDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIK 485
           ++L  +LG     K  E L   EI ++   R L   + + S +K
Sbjct: 651 KELRILLGRWMGTK-PENLLTLEIFSNRFYRIL---MTAFSAVK 690



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/167 (42%), Positives = 105/167 (62%), Gaps = 19/167 (11%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            +SL  CL  F +EE L  +D+WYCPQCK+ +QA+KK DLW+ P++LV+HLKRFS SR+++
Sbjct: 963  ISLNDCLAEFTKEEQLGEDDLWYCPQCKKHQQATKKFDLWKAPDILVVHLKRFSNSRALR 1022

Query: 740  HKLETFVNFPIHDFNLTKYV---------ANKNSSRRQL----------YELYALTNHYG 780
             K++TFV+FPI   +L   +         A      R+L          Y+L+A+  H G
Sbjct: 1023 DKIDTFVDFPIQGLHLEHMIGERKIATKLAESGVDTRELGLDDLDEPLTYDLFAVDEHLG 1082

Query: 781  GMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            G+G GHY A+      ++WY+FDDS+++P    +  +A AY+LFYRR
Sbjct: 1083 GLGGGHYRAYALNHITDKWYHFDDSYVTPARSTEAVNANAYLLFYRR 1129


>gi|426384146|ref|XP_004058636.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 43 [Gorilla
           gorilla gorilla]
          Length = 1195

 Score =  193 bits (490), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 167/654 (25%), Positives = 271/654 (41%), Gaps = 143/654 (21%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLV-------------------------------------- 295
           G  GL N GNTCFMN+ +QCL                                       
Sbjct: 171 GAQGLKNHGNTCFMNAVVQCLSNTDLLAEFLALGRYRAAPGRAEVTEQLAALVRALWTRE 230

Query: 296 HTPEFARYFR---EDYRREINWQNPLGMVELLAFLLDGLHEDLNRVKHKPYIKSKDADGR 352
           +TP+ +  F+     Y  +    +    +E L +LLD +HEDL      P  +    +  
Sbjct: 231 YTPQLSAEFKNAVSKYGSQFQGNSQHDALEFLLWLLDRVHEDLEGSSRGPVSEKLPPEAT 290

Query: 353 PDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTT 412
              E      A  +    S +    Q QY+S+L CP C K S TFDPF+ +SLP+    T
Sbjct: 291 KTSENCLSPSA-QLPLGQSFVQSHFQAQYRSSLTCPHCLKQSNTFDPFLCVSLPIPLRQT 349

Query: 413 RTMTVT-VFTSD-------GSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAE 464
           R ++VT VF S        G A+P   TV        R ++   G +     ++E+ + E
Sbjct: 350 RFLSVTLVFPSKSQRFLRVGLAVPILSTVAA-----LRKMVAEEGGV----PADEVILVE 400

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRVPK------LVKKAVFLQLIHRLQEQEP- 516
           +     QR F D+    L+TI + D++ A++VP       L    + L    RL  +E  
Sbjct: 401 LYPSGFQRSFFDE--EDLNTIAEGDNVYAFQVPPSPSQGTLSAHPLGLSASPRLAAREGQ 458

Query: 517 --------------------GAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLS 556
                               G+ Q  S+   +G P +  I  D  +S  ++Q ++   + 
Sbjct: 459 RFSLSLHSESKVLILFCNLVGSGQQASR---FGPPFL--IREDRAVSWAQLQQSILSKVR 513

Query: 557 PFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDE 616
             +K E+ +                      N  S  +      S A +     L   D 
Sbjct: 514 HLMKSEAPVQ---------------------NLGSLFSIRVVGLSVACSY----LSPKDS 548

Query: 617 SNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEK-YNTHFLENLLEVFKNGPVTKKA 675
             +C   +V+    +R P     + + V+W   + E+ + +   E   +        +  
Sbjct: 549 RPLCH-WAVDRVLHLRRPGGPPHVKLAVEWDSSVKERLFGSLQEERAQDADSVWQQQQAH 607

Query: 676 RTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYS 735
           +    +L  C + + +EE L  +D W CP C+  +Q   KL LW LP++L+IHLKRF   
Sbjct: 608 QQHSCTLDECFQFYTKEEQLAQDDAWKCPHCQVLQQGMVKLSLWTLPDILIIHLKRFCQV 667

Query: 736 RSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQ----------------------LYELY 773
              ++KL T V FP+   N+  +VA +++S                         LY+LY
Sbjct: 668 GERRNKLSTLVKFPLSGLNMAPHVAQRSTSPEAGLGPWPSWKQPDCLPTSYPLDFLYDLY 727

Query: 774 ALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           A+ NH+G +  GHYTA+ +   + +WY++DDS + P+ ED+V +  AY+LFY++
Sbjct: 728 AVCNHHGNLQGGHYTAYCRNSLDGQWYSYDDSTVEPLREDEVNTRGAYILFYQK 781


>gi|345805692|ref|XP_537710.3| PREDICTED: ubiquitin carboxyl-terminal hydrolase 32 isoform 1
           [Canis lupus familiaris]
          Length = 1275

 Score =  193 bits (490), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 165/561 (29%), Positives = 239/561 (42%), Gaps = 151/561 (26%)

Query: 18  GDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAED-----PGAGPEIVDTLLEGRDYI 72
           G   ++L H N       ++P  IDN  LV     +       G   +    L+ GRDY 
Sbjct: 178 GANGNILLHLNP------QKPGAIDNQPLVTQEPVKATSLTLEGGRLKRTPQLIHGRDYE 231

Query: 73  LLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELA-VEVYP---LRLQLLVMPRGECSTI 128
           ++P+ VW  L+ WYG    L R VI +  S+TE+  +E++P   L L+     R + S I
Sbjct: 232 MVPEPVWRALYHWYGANLALPRPVIKN--SKTEIPELELFPRYLLFLRQQPATRTQQSNI 289

Query: 129 RI----------------------SKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHA 166
            +                      S+ +TI E+H        +  E + +W Y       
Sbjct: 290 WVNMGNVPSPNAPLKRVLAYTGCFSRMQTIKEIHEYLSQRLRIKEEDMRLWLYNSENYLT 349

Query: 167 LMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLS 226
           L++             D+D  +E L           IQD          +++E     +S
Sbjct: 350 LLD-------------DEDHRLEYL----------KIQDE-------QHLVIEVRNKDMS 379

Query: 227 IAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCF 286
                S    +S+    ++ T                          G TGL NLGNTCF
Sbjct: 380 WPEEMSFIANSSKIDRHKVPTEK------------------------GATGLSNLGNTCF 415

Query: 287 MNSAIQCLVHTPEFARYF---REDYRREINWQNPLGMV---------------------- 321
           MNS+IQC+ +T    +YF   R  Y  E+N  NP+GM                       
Sbjct: 416 MNSSIQCVSNTQPLTQYFISGRHLY--ELNRTNPIGMKGHMAKCYGDLVQELWSGTQKNV 473

Query: 322 -------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEE 356
                                    ELLAFLLDGLHEDLNRV  KPY++ KD+DGRPD E
Sbjct: 474 APLKLRWTIAKYAPRFNGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVELKDSDGRPDWE 533

Query: 357 VADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMT 416
           VA E W NH+ RN SI+VD+  GQ +S + C  C  +SV FDPF +LSLPL   +   + 
Sbjct: 534 VAAEAWDNHLRRNRSIVVDLFHGQLRSQVRCKTCGHISVRFDPFNFLSLPLPMDSYMHLE 593

Query: 417 VTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF-LD 475
           +TV   DG+  P  Y + +    +   L + L ++C LK SE++ +AE+   +I+ F  D
Sbjct: 594 ITVIKLDGTT-PVRYGLRLNMDEKYTGLKKQLSDLCGLK-SEQILLAEVHGSNIKNFPQD 651

Query: 476 DPLISLSTIKDDDHLAAYRVP 496
           +  + LS       L A+ +P
Sbjct: 652 NQKVRLSV---SGFLCAFEIP 669



 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 75/125 (60%), Gaps = 2/125 (1%)

Query: 642 VYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
           + VDW    L  +Y T   E +++  ++   +++A+ EP++L +CL AF  EE L   +M
Sbjct: 866 IAVDWDPTALHLRYQTS-QERVVDEHESVEQSRRAQAEPINLDSCLRAFTSEEELGENEM 924

Query: 701 WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
           +YC +CK    A+KKLDLWRLP +L+IHLKRF +      K +  V FP  +F+ + ++ 
Sbjct: 925 YYCSKCKTHCLATKKLDLWRLPPILIIHLKRFQFVNGRWIKSQKIVKFPRENFDPSAFLV 984

Query: 761 NKNSS 765
            ++ +
Sbjct: 985 PRDPA 989



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 40/61 (65%), Gaps = 1/61 (1%)

Query: 767  RQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYR 826
            + +Y LYA++ H G +G GHY  + K  + ++WY ++DS    ++ D++ + +AY+LFY 
Sbjct: 1178 KPIYNLYAISCHSGILGGGHYVTYAKNPN-SKWYCYNDSSCKELHPDEIDTDSAYILFYE 1236

Query: 827  R 827
            +
Sbjct: 1237 Q 1237


>gi|332848727|ref|XP_511843.3| PREDICTED: ubiquitin carboxyl-terminal hydrolase 43 [Pan
           troglodytes]
          Length = 1123

 Score =  193 bits (490), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 167/654 (25%), Positives = 271/654 (41%), Gaps = 143/654 (21%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLV-------------------------------------- 295
           G  GL N GNTCFMN+ +QCL                                       
Sbjct: 99  GAQGLKNHGNTCFMNAVVQCLSNTDLLAEFLALGRYQAAPGRAEVTEQLAALVRALWTRE 158

Query: 296 HTPEFARYFR---EDYRREINWQNPLGMVELLAFLLDGLHEDLNRVKHKPYIKSKDADGR 352
           +TP+ +  F+     Y  +    +    +E L +LLD +HEDL      P  +    +  
Sbjct: 159 YTPQLSAEFKNAVSKYGSQFQGNSQHDALEFLLWLLDRVHEDLEGSSRGPVSEKLPPEAT 218

Query: 353 PDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTT 412
              E      A  +    S +    Q QY+S+L CP C K S TFDPF+ +SLP+    T
Sbjct: 219 KTSENCLSPSA-QLPLGQSFVQSHFQAQYRSSLTCPHCLKQSNTFDPFLCVSLPIPLRQT 277

Query: 413 RTMTVT-VFTSD-------GSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAE 464
           R ++VT VF S        G A+P   TV        R ++   G +     ++E+ + E
Sbjct: 278 RFLSVTLVFPSKSQRFLRVGLAVPILSTVAA-----LRKMVAEEGGV----PADEVILVE 328

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRVPK------LVKKAVFLQLIHRLQEQEP- 516
           +     QR F D+    L+TI + D++ A++VP       L    + L    RL  +E  
Sbjct: 329 LYPSGFQRSFFDE--EDLNTIAEGDNVYAFQVPPSPSQGTLSAHPLGLSASPRLAAREGQ 386

Query: 517 --------------------GAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLS 556
                               G+ Q  S+   +G P +  I  D  +S  ++Q ++   + 
Sbjct: 387 RFSLSLHSESKVLILFCNLVGSGQQASR---FGPPFL--IREDRAVSWAQLQQSILSKVR 441

Query: 557 PFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDE 616
             +K E+ +                      N  S  +      S A +     L   D 
Sbjct: 442 HLMKSEAPVQ---------------------NLGSLFSIRVVGLSVACSY----LSPKDS 476

Query: 617 SNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEK-YNTHFLENLLEVFKNGPVTKKA 675
             +C   +V+    +R P     + + V+W   + E+ + +   E   +        +  
Sbjct: 477 RPLCH-WAVDRVLHLRRPGGPPHVKLAVEWDSSVKERLFGSLQEERAQDADSVWQQQQAH 535

Query: 676 RTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYS 735
           +    +L  C + + +EE L  +D W CP C+  +Q   KL LW LP++L+IHLKRF   
Sbjct: 536 QQHSCTLDECFQFYTKEEQLAQDDAWKCPHCQVLQQGMVKLSLWTLPDILIIHLKRFCQV 595

Query: 736 RSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQ----------------------LYELY 773
              ++KL T V FP+   N+  +VA +++S                         LY+LY
Sbjct: 596 GERRNKLSTLVKFPLSGLNMAPHVAQRSTSPEAGLGPWPSWKQPDCLPTSYPLDFLYDLY 655

Query: 774 ALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           A+ NH+G +  GHYTA+ +   + +WY++DDS + P+ ED+V +  AY+LFY++
Sbjct: 656 AVCNHHGNLQGGHYTAYCRNSLDGQWYSYDDSTVEPLREDEVNTRGAYILFYQK 709


>gi|358417223|ref|XP_869385.5| PREDICTED: ubiquitin carboxyl-terminal hydrolase 32 isoform 3 [Bos
           taurus]
          Length = 1597

 Score =  193 bits (490), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 165/561 (29%), Positives = 239/561 (42%), Gaps = 151/561 (26%)

Query: 18  GDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAED-----PGAGPEIVDTLLEGRDYI 72
           G   ++L H N       ++P  IDN  LV     +       G   +    L+ GRDY 
Sbjct: 500 GANGNILLHLNP------QKPGAIDNQPLVTQEPVKATSLTLEGGRLKRTPQLIHGRDYE 553

Query: 73  LLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELA-VEVYP---LRLQLLVMPRGECSTI 128
           ++P+ VW  L+ WYG    L R VI +  S+TE+  +E++P   L L+     R + S I
Sbjct: 554 MVPEPVWRALYHWYGANLALPRPVIKN--SKTEIPELELFPRYLLFLRQQPATRTQQSNI 611

Query: 129 RI----------------------SKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHA 166
            +                      S+ +TI E+H        +  E + +W Y       
Sbjct: 612 WVNMGNVPSPNAPLKRVLAYTGCFSRMQTIKEIHEYLSQRLRIKEEDMRLWLYNSENYLT 671

Query: 167 LMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLS 226
           L++             D+D  +E L           IQD          +++E     +S
Sbjct: 672 LLD-------------DEDHRLEYL----------KIQDE-------QHLVIEVRNKDMS 701

Query: 227 IAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCF 286
                S    +S+    ++ T                          G TGL NLGNTCF
Sbjct: 702 WPEEMSFIANSSKIDRHKVPTEK------------------------GATGLSNLGNTCF 737

Query: 287 MNSAIQCLVHTPEFARYF---REDYRREINWQNPLGMV---------------------- 321
           MNS+IQC+ +T    +YF   R  Y  E+N  NP+GM                       
Sbjct: 738 MNSSIQCVSNTQPLTQYFISGRHLY--ELNRTNPIGMKGHMAKCYGDLVQELWSGTQKNV 795

Query: 322 -------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEE 356
                                    ELLAFLLDGLHEDLNRV  KPY++ KD+DGRPD E
Sbjct: 796 APLKLRWTIAKYAPRFNGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVELKDSDGRPDWE 855

Query: 357 VADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMT 416
           VA E W NH+ RN SI+VD+  GQ +S + C  C  +SV FDPF +LSLPL   +   + 
Sbjct: 856 VAAEAWDNHLRRNRSIVVDLFHGQLRSQVKCKTCGHISVRFDPFNFLSLPLPMDSYMHLE 915

Query: 417 VTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF-LD 475
           +TV   DG+  P  Y + +    +   L + L ++C LK SE++ +AE+   +I+ F  D
Sbjct: 916 ITVIKLDGTT-PVRYGLRLNMDEKYTGLKKQLSDLCGLK-SEQILLAEVHGSNIKNFPQD 973

Query: 476 DPLISLSTIKDDDHLAAYRVP 496
           +  + LS       L A+ +P
Sbjct: 974 NQKVRLSV---SGFLCAFEIP 991



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/122 (36%), Positives = 72/122 (59%), Gaps = 2/122 (1%)

Query: 642  VYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
            + VDW    L  +Y T   E +++  ++   +++A+ EP++L +CL AF  EE L   +M
Sbjct: 1188 IAVDWDPTALHLRYQTS-QERVVDEHESVEQSRRAQAEPINLDSCLRAFTSEEELGENEM 1246

Query: 701  WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
            +YC +CK    A+KKLDLWRLP +L+IHLKRF +      K +  V FP   F+ + ++ 
Sbjct: 1247 YYCSKCKTHCLATKKLDLWRLPPILIIHLKRFQFVNGRWIKSQKIVKFPRESFDPSAFLV 1306

Query: 761  NK 762
             +
Sbjct: 1307 PR 1308



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 40/61 (65%), Gaps = 1/61 (1%)

Query: 767  RQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYR 826
            + +Y LYA++ H G +G GHY  + K  + ++WY ++DS    ++ D++ + +AY+LFY 
Sbjct: 1500 KPIYNLYAISCHSGILGGGHYVTYAKNPN-SKWYCYNDSSCKELHPDEIDTDSAYILFYE 1558

Query: 827  R 827
            +
Sbjct: 1559 Q 1559


>gi|148612811|ref|NP_694942.3| ubiquitin carboxyl-terminal hydrolase 43 isoform 1 [Homo sapiens]
 gi|296452852|sp|Q70EL4.2|UBP43_HUMAN RecName: Full=Ubiquitin carboxyl-terminal hydrolase 43; AltName:
           Full=Deubiquitinating enzyme 43; AltName: Full=Ubiquitin
           thioesterase 43; AltName:
           Full=Ubiquitin-specific-processing protease 43
 gi|219518109|gb|AAI44042.1| Ubiquitin specific peptidase 43 [Homo sapiens]
          Length = 1123

 Score =  193 bits (490), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 167/654 (25%), Positives = 271/654 (41%), Gaps = 143/654 (21%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLV-------------------------------------- 295
           G  GL N GNTCFMN+ +QCL                                       
Sbjct: 99  GAQGLKNHGNTCFMNAVVQCLSNTDLLAEFLALGRYRAAPGRAEVTEQLAALVRALWTRE 158

Query: 296 HTPEFARYFR---EDYRREINWQNPLGMVELLAFLLDGLHEDLNRVKHKPYIKSKDADGR 352
           +TP+ +  F+     Y  +    +    +E L +LLD +HEDL      P  +    +  
Sbjct: 159 YTPQLSAEFKNAVSKYGSQFQGNSQHDALEFLLWLLDRVHEDLEGSSRGPVSEKLPPEAT 218

Query: 353 PDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTT 412
              E      A  +    S +    Q QY+S+L CP C K S TFDPF+ +SLP+    T
Sbjct: 219 KTSENCLSPSA-QLPLGQSFVQSHFQAQYRSSLTCPHCLKQSNTFDPFLCVSLPIPLRQT 277

Query: 413 RTMTVT-VFTSD-------GSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAE 464
           R ++VT VF S        G A+P   TV        R ++   G +     ++E+ + E
Sbjct: 278 RFLSVTLVFPSKSQRFLRVGLAVPILSTVAA-----LRKMVAEEGGV----PADEVILVE 328

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRVPK------LVKKAVFLQLIHRLQEQEP- 516
           +     QR F D+    L+TI + D++ A++VP       L    + L    RL  +E  
Sbjct: 329 LYPSGFQRSFFDE--EDLNTIAEGDNVYAFQVPPSPSQGTLSAHPLGLSASPRLAAREGQ 386

Query: 517 --------------------GAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLS 556
                               G+ Q  S+   +G P +  I  D  +S  ++Q ++   + 
Sbjct: 387 RFSLSLHSESKVLILFCNLVGSGQQASR---FGPPFL--IREDRAVSWAQLQQSILSKVR 441

Query: 557 PFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDE 616
             +K E+ +                      N  S  +      S A +     L   D 
Sbjct: 442 HLMKSEAPVQ---------------------NLGSLFSIRVVGLSVACSY----LSPKDS 476

Query: 617 SNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEK-YNTHFLENLLEVFKNGPVTKKA 675
             +C   +V+    +R P     + + V+W   + E+ + +   E   +        +  
Sbjct: 477 RPLCH-WAVDRVLHLRRPGGPPHVKLAVEWDSSVKERLFGSLQEERAQDADSVWQQQQAH 535

Query: 676 RTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYS 735
           +    +L  C + + +EE L  +D W CP C+  +Q   KL LW LP++L+IHLKRF   
Sbjct: 536 QQHSCTLDECFQFYTKEEQLAQDDAWKCPHCQVLQQGMVKLSLWTLPDILIIHLKRFCQV 595

Query: 736 RSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQ----------------------LYELY 773
              ++KL T V FP+   N+  +VA +++S                         LY+LY
Sbjct: 596 GERRNKLSTLVKFPLSGLNMAPHVAQRSTSPEAGLGPWPSWKQPDCLPTSYPLDFLYDLY 655

Query: 774 ALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           A+ NH+G +  GHYTA+ +   + +WY++DDS + P+ ED+V +  AY+LFY++
Sbjct: 656 AVCNHHGNLQGGHYTAYCRNSLDGQWYSYDDSTVEPLREDEVNTRGAYILFYQK 709


>gi|297486436|ref|XP_002695689.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 32 [Bos taurus]
 gi|296476967|tpg|DAA19082.1| TPA: ubiquitin specific peptidase 32 [Bos taurus]
          Length = 1543

 Score =  193 bits (490), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 165/561 (29%), Positives = 239/561 (42%), Gaps = 151/561 (26%)

Query: 18  GDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAED-----PGAGPEIVDTLLEGRDYI 72
           G   ++L H N       ++P  IDN  LV     +       G   +    L+ GRDY 
Sbjct: 446 GANGNILLHLNP------QKPGAIDNQPLVTQEPVKATSLTLEGGRLKRTPQLIHGRDYE 499

Query: 73  LLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELA-VEVYP---LRLQLLVMPRGECSTI 128
           ++P+ VW  L+ WYG    L R VI +  S+TE+  +E++P   L L+     R + S I
Sbjct: 500 MVPEPVWRALYHWYGANLALPRPVIKN--SKTEIPELELFPRYLLFLRQQPATRTQQSNI 557

Query: 129 RI----------------------SKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHA 166
            +                      S+ +TI E+H        +  E + +W Y       
Sbjct: 558 WVNMGNVPSPNAPLKRVLAYTGCFSRMQTIKEIHEYLSQRLRIKEEDMRLWLYNSENYLT 617

Query: 167 LMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLS 226
           L++             D+D  +E L           IQD          +++E     +S
Sbjct: 618 LLD-------------DEDHRLEYL----------KIQDE-------QHLVIEVRNKDMS 647

Query: 227 IAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCF 286
                S    +S+    ++ T                          G TGL NLGNTCF
Sbjct: 648 WPEEMSFIANSSKIDRHKVPTEK------------------------GATGLSNLGNTCF 683

Query: 287 MNSAIQCLVHTPEFARYF---REDYRREINWQNPLGMV---------------------- 321
           MNS+IQC+ +T    +YF   R  Y  E+N  NP+GM                       
Sbjct: 684 MNSSIQCVSNTQPLTQYFISGRHLY--ELNRTNPIGMKGHMAKCYGDLVQELWSGTQKNV 741

Query: 322 -------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEE 356
                                    ELLAFLLDGLHEDLNRV  KPY++ KD+DGRPD E
Sbjct: 742 APLKLRWTIAKYAPRFNGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVELKDSDGRPDWE 801

Query: 357 VADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMT 416
           VA E W NH+ RN SI+VD+  GQ +S + C  C  +SV FDPF +LSLPL   +   + 
Sbjct: 802 VAAEAWDNHLRRNRSIVVDLFHGQLRSQVKCKTCGHISVRFDPFNFLSLPLPMDSYMHLE 861

Query: 417 VTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF-LD 475
           +TV   DG+  P  Y + +    +   L + L ++C LK SE++ +AE+   +I+ F  D
Sbjct: 862 ITVIKLDGTT-PVRYGLRLNMDEKYTGLKKQLSDLCGLK-SEQILLAEVHGSNIKNFPQD 919

Query: 476 DPLISLSTIKDDDHLAAYRVP 496
           +  + LS       L A+ +P
Sbjct: 920 NQKVRLSV---SGFLCAFEIP 937



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/122 (36%), Positives = 72/122 (59%), Gaps = 2/122 (1%)

Query: 642  VYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
            + VDW    L  +Y T   E +++  ++   +++A+ EP++L +CL AF  EE L   +M
Sbjct: 1134 IAVDWDPTALHLRYQTS-QERVVDEHESVEQSRRAQAEPINLDSCLRAFTSEEELGENEM 1192

Query: 701  WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
            +YC +CK    A+KKLDLWRLP +L+IHLKRF +      K +  V FP   F+ + ++ 
Sbjct: 1193 YYCSKCKTHCLATKKLDLWRLPPILIIHLKRFQFVNGRWIKSQKIVKFPRESFDPSAFLV 1252

Query: 761  NK 762
             +
Sbjct: 1253 PR 1254



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 40/61 (65%), Gaps = 1/61 (1%)

Query: 767  RQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYR 826
            + +Y LYA++ H G +G GHY  + K  + ++WY ++DS    ++ D++ + +AY+LFY 
Sbjct: 1446 KPIYNLYAISCHSGILGGGHYVTYAKNPN-SKWYCYNDSSCKELHPDEIDTDSAYILFYE 1504

Query: 827  R 827
            +
Sbjct: 1505 Q 1505


>gi|148668417|gb|EDL00741.1| ubiquitin specific peptidase 11, isoform CRA_b [Mus musculus]
          Length = 434

 Score =  193 bits (490), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 123/322 (38%), Positives = 161/322 (50%), Gaps = 60/322 (18%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV----------- 321
           G+ GL NLGNTCFMNSA+QCL + P+   YF  + Y  E+N++NPLGM            
Sbjct: 101 GICGLTNLGNTCFMNSALQCLSNVPQLTEYFLNNRYLEELNFRNPLGMKGELAEAYADLV 160

Query: 322 ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                               ELL+FLLDGLHEDLNRVK K Y++
Sbjct: 161 KQTWSGYHRSIVPNVFKNKVGHFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVE 220

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
             +  GRPD EVA E W NH  RNDS+IVD   G +KSTLVCP C  VSVTFDPF YLS+
Sbjct: 221 LCNGAGRPDLEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSV 280

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
           PL   + R + V     D    P  + V VPK G   DL   L    S+   +++ VA++
Sbjct: 281 PLPVCSRRVLEVFFVPMDPRRKPEQHRVVVPKKGNISDLCVALSTHTSVA-PDKMIVADV 339

Query: 466 QNHSIQRF--LDDPLISLSTIKDDDHLAAYRVPKLVKKAVF----LQLIHRLQEQEPGAA 519
            +H   +   L+DP   LS I D D +  Y V   ++        + +   L+E+ P   
Sbjct: 340 FSHRFYKLYQLEDP---LSGILDRDDIFVYEVTGRIEPVEGSRDDIVVPVYLRERTPSRD 396

Query: 520 QTTSQWK--AYGTPLVSSISRD 539
              S +    +G PL+ S+ RD
Sbjct: 397 YNNSYYGLILFGHPLLVSVPRD 418


>gi|440908871|gb|ELR58849.1| Ubiquitin carboxyl-terminal hydrolase 32, partial [Bos grunniens
           mutus]
          Length = 1586

 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 165/561 (29%), Positives = 239/561 (42%), Gaps = 151/561 (26%)

Query: 18  GDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAED-----PGAGPEIVDTLLEGRDYI 72
           G   ++L H N       ++P  IDN  LV     +       G   +    L+ GRDY 
Sbjct: 489 GANGNILLHLNP------QKPGAIDNQPLVTQEPVKATSLTLEGGRLKRTPQLIHGRDYE 542

Query: 73  LLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELA-VEVYP---LRLQLLVMPRGECSTI 128
           ++P+ VW  L+ WYG    L R VI +  S+TE+  +E++P   L L+     R + S I
Sbjct: 543 MVPEPVWRALYHWYGANLALPRPVIKN--SKTEIPELELFPRYLLFLRQQPATRTQQSNI 600

Query: 129 RI----------------------SKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHA 166
            +                      S+ +TI E+H        +  E + +W Y       
Sbjct: 601 WVNMGNVPSPNAPLKRVLAYTGCFSRMQTIKEIHEYLSQRLRIKEEDMRLWLYNSENYLT 660

Query: 167 LMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLS 226
           L++             D+D  +E L           IQD          +++E     +S
Sbjct: 661 LLD-------------DEDHRLEYL----------KIQDE-------QHLVIEVRNKDMS 690

Query: 227 IAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCF 286
                S    +S+    ++ T                          G TGL NLGNTCF
Sbjct: 691 WPEEMSFIANSSKIDRHKVPTEK------------------------GATGLSNLGNTCF 726

Query: 287 MNSAIQCLVHTPEFARYF---REDYRREINWQNPLGMV---------------------- 321
           MNS+IQC+ +T    +YF   R  Y  E+N  NP+GM                       
Sbjct: 727 MNSSIQCVSNTQPLTQYFISGRHLY--ELNRTNPIGMKGHMAKCYGDLVQELWSGTQKNV 784

Query: 322 -------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEE 356
                                    ELLAFLLDGLHEDLNRV  KPY++ KD+DGRPD E
Sbjct: 785 APLKLRWTIAKYAPRFNGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVELKDSDGRPDWE 844

Query: 357 VADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMT 416
           VA E W NH+ RN SI+VD+  GQ +S + C  C  +SV FDPF +LSLPL   +   + 
Sbjct: 845 VAAEAWDNHLRRNRSIVVDLFHGQLRSQVKCKTCGHISVRFDPFNFLSLPLPMDSYMHLE 904

Query: 417 VTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF-LD 475
           +TV   DG+  P  Y + +    +   L + L ++C LK SE++ +AE+   +I+ F  D
Sbjct: 905 ITVIKLDGTT-PVRYGLRLNMDEKYTGLKKQLSDLCGLK-SEQILLAEVHGSNIKNFPQD 962

Query: 476 DPLISLSTIKDDDHLAAYRVP 496
           +  + LS       L A+ +P
Sbjct: 963 NQKVRLSV---SGFLCAFEIP 980



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/122 (36%), Positives = 72/122 (59%), Gaps = 2/122 (1%)

Query: 642  VYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
            + VDW    L  +Y T   E +++  ++   +++A+ EP++L +CL AF  EE L   +M
Sbjct: 1177 IAVDWDPTALHLRYQTS-QERVVDEHESVEQSRRAQAEPINLDSCLRAFTSEEELGENEM 1235

Query: 701  WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
            +YC +CK    A+KKLDLWRLP +L+IHLKRF +      K +  V FP   F+ + ++ 
Sbjct: 1236 YYCSKCKTHCLATKKLDLWRLPPILIIHLKRFQFVNGRWIKSQKIVKFPRESFDPSAFLV 1295

Query: 761  NK 762
             +
Sbjct: 1296 PR 1297



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 40/61 (65%), Gaps = 1/61 (1%)

Query: 767  RQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYR 826
            + +Y LYA++ H G +G GHY  + K  + ++WY ++DS    ++ D++ + +AY+LFY 
Sbjct: 1489 KPIYNLYAISCHSGILGGGHYVTYAKNPN-SKWYCYNDSSCKELHPDEIDTDSAYILFYE 1547

Query: 827  R 827
            +
Sbjct: 1548 Q 1548


>gi|426237054|ref|XP_004012476.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 32 [Ovis aries]
          Length = 1275

 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 165/561 (29%), Positives = 239/561 (42%), Gaps = 151/561 (26%)

Query: 18  GDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAED-----PGAGPEIVDTLLEGRDYI 72
           G   ++L H N       ++P  IDN  LV     +       G   +    L+ GRDY 
Sbjct: 178 GANGNILLHLNP------QKPGAIDNQPLVTQEPVKATSLTLEGGRLKRTPQLVHGRDYE 231

Query: 73  LLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELA-VEVYP---LRLQLLVMPRGECSTI 128
           ++P+ VW  L+ WYG    L R VI +  S+TE+  +E++P   L L+     R + S I
Sbjct: 232 MVPEPVWRALYHWYGANLALPRPVIKN--SKTEIPELELFPRYLLFLRQQPATRTQQSNI 289

Query: 129 RI----------------------SKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHA 166
            +                      S+ +TI E+H        +  E + +W Y       
Sbjct: 290 WVNMGNVPSPNAPLKRVLAYTGCFSRMQTIKEIHEYLSQRLRIKEEDMRLWLYNSENYLT 349

Query: 167 LMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLS 226
           L++             D+D  +E L           IQD          +++E     +S
Sbjct: 350 LLD-------------DEDHRLEYL----------KIQDE-------QHLVIEVRNKDMS 379

Query: 227 IAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCF 286
                S    +S+    ++ T                          G TGL NLGNTCF
Sbjct: 380 WPEEMSFIANSSKIDRHKVPTEK------------------------GATGLSNLGNTCF 415

Query: 287 MNSAIQCLVHTPEFARYF---REDYRREINWQNPLGMV---------------------- 321
           MNS+IQC+ +T    +YF   R  Y  E+N  NP+GM                       
Sbjct: 416 MNSSIQCVSNTQPLTQYFISGRHLY--ELNRTNPIGMKGHMAKCYGDLVQELWSGTQKNV 473

Query: 322 -------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEE 356
                                    ELLAFLLDGLHEDLNRV  KPY++ KD+DGRPD E
Sbjct: 474 APLKLRWTIAKYAPRFNGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVELKDSDGRPDWE 533

Query: 357 VADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMT 416
           VA E W NH+ RN SI+VD+  GQ +S + C  C  +SV FDPF +LSLPL   +   + 
Sbjct: 534 VAAEAWDNHLRRNRSIVVDLFHGQLRSQVKCKTCGHISVRFDPFNFLSLPLPMDSYMHLE 593

Query: 417 VTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF-LD 475
           +TV   DG+  P  Y + +    +   L + L ++C LK SE++ +AE+   +I+ F  D
Sbjct: 594 ITVIKLDGTT-PVRYGLRLNMDEKYTGLKKQLSDLCGLK-SEQILLAEVHGSNIKNFPQD 651

Query: 476 DPLISLSTIKDDDHLAAYRVP 496
           +  + LS       L A+ +P
Sbjct: 652 NQKVRLSV---SGFLCAFEIP 669



 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 74/125 (59%), Gaps = 2/125 (1%)

Query: 642 VYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
           + VDW    L  +Y T   E +++  ++   +++A+ EP++L +CL AF  EE L   +M
Sbjct: 866 IAVDWDPTALHLRYQTS-QERVVDEHESVEQSRRAQAEPINLDSCLRAFTSEEELGENEM 924

Query: 701 WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
           +YC +CK    A+KKLDLWRLP +L+IHLKRF +      K +  V FP   F+ + ++ 
Sbjct: 925 YYCSKCKTHCLATKKLDLWRLPPILIIHLKRFQFVNGRWIKSQKIVKFPRESFDPSAFLV 984

Query: 761 NKNSS 765
            ++ +
Sbjct: 985 PRDPA 989



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 40/61 (65%), Gaps = 1/61 (1%)

Query: 767  RQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYR 826
            + +Y LYA++ H G +G GHY  + K  + ++WY ++DS    ++ D++ + +AY+LFY 
Sbjct: 1178 KPIYNLYAISCHSGILGGGHYVTYAKNPN-SKWYCYNDSSCKELHPDEIDTDSAYILFYE 1236

Query: 827  R 827
            +
Sbjct: 1237 Q 1237


>gi|301771536|ref|XP_002921206.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 43-like
           [Ailuropoda melanoleuca]
          Length = 1056

 Score =  192 bits (489), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 165/642 (25%), Positives = 270/642 (42%), Gaps = 136/642 (21%)

Query: 275 LTGLLNLGNTCFMNSAIQCLV-----------------------HTPEFARYFR---EDY 308
           L GL N GNTCFMN+ +QCL                        +TP+ +  F+     Y
Sbjct: 36  LQGLKNHGNTCFMNAVVQCLSNTDLLAEFLALGRYRAAPGXTREYTPQLSAEFKNAVSKY 95

Query: 309 RREINWQNPLGMVELLAFLLDGLHEDLNRVKHKPYIKSKDADG-RPDEEVADEYWANHIA 367
             +         +E L +LLD LHEDL      P  +    +  R  E +     +  ++
Sbjct: 96  GSQFQGNAQHDALEFLLWLLDRLHEDLEGSARSPGSEKPQPEATRTPENLPSP--SAQLS 153

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVT-VFTSD--- 423
              S +    Q QY+S+L CP C K S TFDPF+ +SLP+    TR ++VT VF S    
Sbjct: 154 LGQSFVQSHFQAQYRSSLTCPHCLKQSNTFDPFLCVSLPIPLRQTRFLSVTLVFPSKSQR 213

Query: 424 ----GSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPL 478
               G A+P   TV        R ++   G +     ++E+ + E+     QR F D+  
Sbjct: 214 FLRVGLAVPILSTVAA-----LRKIVAEEGGV----PADEVILVELCPTGFQRSFFDE-- 262

Query: 479 ISLSTIKDDDHLAAYRVPKLVKKAVF------LQLIHRLQEQEP---------------- 516
             L+TI + D++ A+  P    + +       L +  RL  +E                 
Sbjct: 263 EDLNTISEGDNVYAFHAPPPPGQEMLSAHPSGLSVSPRLAAREGPRSSLPVHSENKVLVL 322

Query: 517 -----GAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFD 571
                G+ Q  S+   +G P +  +  D  IS  +++  +   +   +K E+ +      
Sbjct: 323 FCNLVGSGQQASR---FGPPFL--LREDRAISWAQLRECILSKVRCVMKSEAPIQ----- 372

Query: 572 PSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTI 631
                           N  S  +      S A T     L   D   +C   +V+     
Sbjct: 373 ----------------NPGSLFSIRVVGLSLACTY----LSPQDSHPLC-HWAVDRALYP 411

Query: 632 RIPSSSTSIVVYVDW----SQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLE 687
           R P     I + V+W     ++L        +++   V++     +  +    +L  C +
Sbjct: 412 RRPGGPPHIKLAVEWDSCAKERLFGGLQRERVQDADSVWRQ---QQAPQQHSCTLDECFQ 468

Query: 688 AFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVN 747
            + +EE L  +D W CP C+  ++   KL LW LP++L++HLKRF      +HKL T V 
Sbjct: 469 FYTKEEQLAQDDAWKCPHCEALQRGMVKLSLWTLPDILIVHLKRFCQLGERRHKLSTLVK 528

Query: 748 FPIHDFNLTKYVANKNSSRRQ----------------------LYELYALTNHYGGMGSG 785
           FP+   N+  +VA +++                          LY+LYA+ NH+G +  G
Sbjct: 529 FPLSGLNMAPHVAQRSAGPPPAMGPRPPWKQPAGLPPGYPLDFLYDLYAVCNHHGTLQGG 588

Query: 786 HYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           HYTA+ +   + +WY++DDS +  + ED+V S  AY+LFY++
Sbjct: 589 HYTAYCRNSLDGQWYSYDDSTVELLPEDEVNSRGAYILFYQK 630


>gi|301776002|ref|XP_002923425.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 32-like [Ailuropoda
            melanoleuca]
          Length = 1653

 Score =  192 bits (489), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 165/561 (29%), Positives = 239/561 (42%), Gaps = 151/561 (26%)

Query: 18   GDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAED-----PGAGPEIVDTLLEGRDYI 72
            G   ++L H N       ++P  IDN  LV     +       G   +    L+ GRDY 
Sbjct: 556  GANGNILLHLNP------QKPGAIDNQPLVTQEPVKATSLTLEGGRLKRTPQLIHGRDYE 609

Query: 73   LLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELA-VEVYP---LRLQLLVMPRGECSTI 128
            ++P+ VW  L+ WYG    L R VI +  S+TE+  +E++P   L L+     R + S I
Sbjct: 610  MVPEPVWRALYHWYGANLALPRPVIKN--SKTEIPELELFPRYLLFLRQQPATRTQQSNI 667

Query: 129  RI----------------------SKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHA 166
             +                      S+ +TI E+H        +  E + +W Y       
Sbjct: 668  WVNMGNVPSPNAPLKRVLAYTGCFSRMQTIKEIHEYLSQRLRIKEEDMRLWLYNSENYLT 727

Query: 167  LMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLS 226
            L++             D+D  +E L           IQD          +++E     +S
Sbjct: 728  LLD-------------DEDHRLEYL----------KIQDE-------QHLVIEVRNKDMS 757

Query: 227  IAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCF 286
                 S    +S+    ++ T                          G TGL NLGNTCF
Sbjct: 758  WPEEMSFIANSSKIDRHKVPTEK------------------------GATGLSNLGNTCF 793

Query: 287  MNSAIQCLVHTPEFARYF---REDYRREINWQNPLGMV---------------------- 321
            MNS+IQC+ +T    +YF   R  Y  E+N  NP+GM                       
Sbjct: 794  MNSSIQCVSNTQPLTQYFISGRHLY--ELNRTNPIGMKGHMAKCYGDLVQELWSGTQKNV 851

Query: 322  -------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEE 356
                                     ELLAFLLDGLHEDLNRV  KPY++ KD+DGRPD E
Sbjct: 852  APLKLPWTIAKYAPRFNGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVELKDSDGRPDWE 911

Query: 357  VADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMT 416
            VA E W NH+ RN SI+VD+  GQ +S + C  C  +SV FDPF +LSLPL   +   + 
Sbjct: 912  VAAEAWDNHLRRNRSIVVDLFHGQLRSQVRCKTCGHISVRFDPFNFLSLPLPMDSYMHLE 971

Query: 417  VTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF-LD 475
            +TV   DG+  P  Y + +    +   L + L ++C LK SE++ +AE+   +I+ F  D
Sbjct: 972  ITVIKLDGTT-PVRYGLRLNMDEKYTGLKKQLSDLCGLK-SEQILLAEVHGSNIKNFPQD 1029

Query: 476  DPLISLSTIKDDDHLAAYRVP 496
            +  + LS       L A+ +P
Sbjct: 1030 NQKVRLSV---SGFLCAFEIP 1047



 Score = 89.4 bits (220), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 74/125 (59%), Gaps = 2/125 (1%)

Query: 642  VYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
            + VDW    L  +Y T   E +++  ++   +++A+ EP++L +CL AF  EE L   +M
Sbjct: 1244 IAVDWDPTALHLRYQTS-QERVVDEHESVEQSRRAQAEPINLDSCLRAFTSEEELGENEM 1302

Query: 701  WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
            +YC +CK    A+KKLDLWRLP +L+IHLKRF +      K +  V FP   F+ + ++ 
Sbjct: 1303 YYCSKCKTHCLATKKLDLWRLPPILIIHLKRFQFVNGRWIKSQKIVKFPRESFDPSAFLV 1362

Query: 761  NKNSS 765
             ++ +
Sbjct: 1363 PRDPA 1367



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 40/61 (65%), Gaps = 1/61 (1%)

Query: 767  RQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYR 826
            + +Y LYA++ H G +G GHY  + K  + ++WY ++DS    ++ D++ + +AY+LFY 
Sbjct: 1556 KPIYNLYAISCHSGILGGGHYVTYAKNPN-SKWYCYNDSSCKELHPDEIDTDSAYILFYE 1614

Query: 827  R 827
            +
Sbjct: 1615 Q 1615


>gi|344290216|ref|XP_003416834.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 43 [Loxodonta
           africana]
          Length = 1134

 Score =  192 bits (489), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 165/648 (25%), Positives = 280/648 (43%), Gaps = 139/648 (21%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLV-------------------------------------- 295
           G  GL N GNTCFMN+ +QCL                                       
Sbjct: 100 GAQGLKNHGNTCFMNAVVQCLSNTDLLAEFLALGRYRAAPGRAEVTEQLAALVRALWTRE 159

Query: 296 HTPEFARYFR---EDYRREINWQNPLGMVELLAFLLDGLHEDLNRVKHKPYI-KSKDADG 351
           +TP+ +  F+     Y  +    +    +E L +LLD +HEDL+    +    K +    
Sbjct: 160 YTPQLSAEFKNAVSKYGSQFQGNSQHDALEFLLWLLDRVHEDLDGSSQRGVSDKLQPETS 219

Query: 352 RPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATT 411
           +  E ++       +    S +    Q QY+S+L CP C K S TFDPF+ +SLP+    
Sbjct: 220 KHSENLSS---TAQLPLGQSFVQSHFQAQYRSSLTCPHCLKQSNTFDPFLCVSLPIPLRQ 276

Query: 412 TRTMTVTV--------FTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVA 463
           TR ++VT+        F   G A+P   TV        R ++   GN+     ++E+ + 
Sbjct: 277 TRFLSVTLAFPSKSQRFLRVGLAVPILSTVAA-----LRKMVADEGNV----PADEVILV 327

Query: 464 EIQNHSIQR-FLDDPLISLSTIKDDDHLAAYRVPKLV---KKAVF---LQLIHRLQEQEP 516
           E+      R F DD    L++I + D++ A+  P      +++V    L +  RL  +E 
Sbjct: 328 ELHPSGFHRSFFDD--DDLNSIAEGDNVYAFHCPSSPGQGRRSVHPSGLPVSPRLAAREG 385

Query: 517 --------------GAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKE 562
                         G+ Q  S+   +G P +  +  D  IS  ++Q  +   +   +K+E
Sbjct: 386 QRGNKVLILCCNVVGSGQQASR---FGPPFL--VREDRGISWPQLQQCILSKVCYLMKRE 440

Query: 563 SLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFD 622
           + +       S  V  +       S + S ++ +D                     +C  
Sbjct: 441 APLQNLGVPFSIRVVGL-------SLACSYLSPQDGRP------------------LCHW 475

Query: 623 LSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEP-LS 681
           + V+    +R P     + + V+W     E+      E  ++  ++    ++A  +P  +
Sbjct: 476 V-VDRALHLRRPGGPPHVKLAVEWDSCAKERLFGSLQEERVQDAESVWQQQQAHQQPSCT 534

Query: 682 LYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHK 741
           L  C + + +EE L  +D W CP CK  +Q + KL LW LP++L+IHLKRF      ++K
Sbjct: 535 LDECFQFYTKEEQLTQDDAWKCPHCKVLQQGTVKLSLWTLPDILIIHLKRFCQVGERRNK 594

Query: 742 LETFVNFPIHDFNLTKYVANKNSSRRQ----------------------LYELYALTNHY 779
           L T V FP+   N+  +VA +++  +                       LY+LYA+ NH+
Sbjct: 595 LSTLVKFPLSGLNMAPHVAPRSTGPQPGSGPWPSWKQPTCLPNGYPLDFLYDLYAVCNHH 654

Query: 780 GGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           G +  GHYTA+ +   + RWY++DDS + P+ ED+V +  AY+LFY++
Sbjct: 655 GSLQGGHYTAYCRNSLDGRWYSYDDSTVEPLREDEVNTRGAYILFYQK 702


>gi|118404614|ref|NP_001072879.1| ubiquitin specific peptidase 19 [Xenopus (Silurana) tropicalis]
 gi|116487747|gb|AAI25669.1| hypothetical protein MGC145127 [Xenopus (Silurana) tropicalis]
          Length = 1435

 Score =  192 bits (489), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 114/291 (39%), Positives = 156/291 (53%), Gaps = 55/291 (18%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLGM------------ 320
           G TGL+NLGNTCFMNS IQ L +T E   YF++  +  EIN  NPLG             
Sbjct: 624 GFTGLVNLGNTCFMNSVIQSLSNTRELRDYFQDRSFESEINCNNPLGTGGRLAVSFAVLL 683

Query: 321 -----------------------------------VELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 684 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 743

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDEEVADE W  H  RNDS +VD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 744 TVDSDGRPDEEVADEAWLRHKMRNDSFVVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 803

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + +TV  F  +    P  + V++ K +    ++++ +     +K +E L++AE
Sbjct: 804 PL-PQKQKVLTVYYFAREPHKKPIKFLVSISKENSSAAEVLESISKSVRVK-AENLQLAE 861

Query: 465 IQNHSIQRFLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +  QR    P  SL ++  +D L  + V   +L K + V  Q+  R Q
Sbjct: 862 VVKNRFQRIF-RPSCSLDSVSPNDLLFCFEVLSKELSKERVVVFQVQQRPQ 911



 Score =  154 bits (388), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 72/168 (42%), Positives = 106/168 (63%), Gaps = 9/168 (5%)

Query: 669  GPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIH 728
            G  ++ AR    +L  CL  F + E L PE+ WYCP+C + R+ASK+L LWRLP +L+I 
Sbjct: 1192 GSASEAARAGLFTLDQCLNLFTKPEVLAPEEAWYCPKCNQHREASKQLMLWRLPNILIIQ 1251

Query: 729  LKRFSYSRSM-KHKLETFVNFPIHDFNLTKY-VANKNSSRRQLYELYALTNHYGGMGSGH 786
            LKRFS+   + + K+   V+FP+ + +L+ + +  K   +R +Y+LYA+ NHYGGM  GH
Sbjct: 1252 LKRFSFRTFIWRDKINDMVDFPVRNLDLSTFCIGQKEDHQRPIYDLYAVINHYGGMIGGH 1311

Query: 787  YTAHIKLLDENR-------WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            YTA+ +L +E         W  FDDS ++ ++E  V +  AYVLFYRR
Sbjct: 1312 YTAYARLPNEKNSQRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRR 1359


>gi|432113608|gb|ELK35890.1| Ubiquitin carboxyl-terminal hydrolase 32 [Myotis davidii]
          Length = 1647

 Score =  192 bits (488), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 164/561 (29%), Positives = 240/561 (42%), Gaps = 151/561 (26%)

Query: 18   GDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAED-----PGAGPEIVDTLLEGRDYI 72
            G   ++L H N       ++P  IDN  LV     +       G   +    L+ GRDY 
Sbjct: 546  GANGNILLHLNP------QKPGAIDNQPLVTQEPVKATSLTLEGGRLKRTPQLIHGRDYE 599

Query: 73   LLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELA-VEVYP---LRLQLLVMPRGECSTI 128
            ++P+ VW  L+ WYG    L R VI +  S+TE+  +E++P   L L+     R + S I
Sbjct: 600  MVPEPVWRALYHWYGANLALPRPVIKN--SKTEIPELELFPRYLLFLRQQPATRTQQSNI 657

Query: 129  RI----------------------SKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHA 166
             +                      S+ +TI E+H        +  E + +W Y       
Sbjct: 658  WVNMGNVPSPNAPLKRVLAYTGCFSRMQTIKEIHEYLSQRLRIKEEDMRLWLYNSENYLT 717

Query: 167  LMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLS 226
            L++             D+D  +E L           IQD          +++E     +S
Sbjct: 718  LLD-------------DEDHRLEYL----------KIQDE-------QHLVIEVRNKDMS 747

Query: 227  IAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCF 286
                 S    +S+    ++ T                          G TGL NLGNTCF
Sbjct: 748  WPEEMSFIANSSKIDRHKVPTEK------------------------GATGLSNLGNTCF 783

Query: 287  MNSAIQCLVHTPEFARYF---REDYRREINWQNPLGMV---------------------- 321
            MNS+IQC+ +T    +YF   R  Y  E+N  NP+GM                       
Sbjct: 784  MNSSIQCVSNTQPLTQYFISGRHLY--ELNRTNPIGMKGHMAKCYGDLVQELWSGTQKNV 841

Query: 322  -------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEE 356
                                     ELLAFLLDGLHEDLNRV  KPY++ KD++GRPD E
Sbjct: 842  APLKLRWTIAKYAPRFNGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVELKDSNGRPDWE 901

Query: 357  VADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMT 416
            VA E W NH+ RN SI+VD+  GQ +S + C  C  +SV FDPF +LSLPL   +   + 
Sbjct: 902  VAAEAWDNHLRRNRSIVVDLFHGQLRSQVKCKTCGHISVRFDPFNFLSLPLPMDSYMHLE 961

Query: 417  VTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF-LD 475
            +TV   DG+  P  Y + +    +   L + L ++C LK SE++ +AE+   +I+ F  D
Sbjct: 962  ITVIKLDGTT-PVRYGLRLNMDEKYTGLKKQLSDLCGLK-SEQILLAEVHGSNIKNFPQD 1019

Query: 476  DPLISLSTIKDDDHLAAYRVP 496
            +  + LS      +L A+ +P
Sbjct: 1020 NQKVRLSV---SGYLCAFEIP 1037



 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 72/125 (57%), Gaps = 2/125 (1%)

Query: 642  VYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
            + VDW    L  +Y T   E + +  ++   +++A+ EP++L  CL AF  EE L   +M
Sbjct: 1234 IAVDWDPTALHLRYQTS-QERVADEHESVEQSRRAQAEPINLDNCLRAFTSEEELGENEM 1292

Query: 701  WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
            +YC +CK    A+KKLDLWRLP VL+IHLKRF +      K +  V FP   F+ + ++ 
Sbjct: 1293 YYCSKCKTHCLATKKLDLWRLPPVLIIHLKRFQFVNGRWIKSQKIVKFPRESFDPSAFLV 1352

Query: 761  NKNSS 765
             +N +
Sbjct: 1353 PRNPA 1357



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 39/59 (66%), Gaps = 1/59 (1%)

Query: 769  LYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            +Y LYA++ H G +G GHY  + K  + ++WY ++DS    ++ D++ + +AY+LFY +
Sbjct: 1552 IYNLYAISCHSGILGGGHYVTYAKNPN-SKWYCYNDSSCKELHPDEIDTDSAYILFYEQ 1609


>gi|47224929|emb|CAG06499.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1669

 Score =  192 bits (488), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 165/560 (29%), Positives = 237/560 (42%), Gaps = 158/560 (28%)

Query: 34   ASKRPSGIDNSDLVN-DATAEDP-----GAGPEIVDTLLEGRDYILLPQEVWNQLHSWYG 87
            A++RP  IDN  LVN D     P     G   +    L+ GRD+  +P+ VW  L+ WYG
Sbjct: 532  AAQRPGAIDNQSLVNTDPMKAAPTLTLEGGRLKRSLQLVPGRDFETMPEPVWRALYHWYG 591

Query: 88   GGPTLARKVI-SSGLSQTELAVEVYP-----LRLQ------------------------L 117
               +L R VI  S   Q EL  E++P     LR Q                         
Sbjct: 592  ANLSLPRPVILDSKTGQAEL--ELFPRYLLFLRQQPATRSPQSNIWVNMGMTTMRMFPPY 649

Query: 118  LVMPRGECS------------TIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKH 165
            ++ PRG               T   S+ +TI ++H        +  E + +W +      
Sbjct: 650  MIPPRGSVPSPNAPLKRVLAYTGCFSRVDTIKDIHLYLSQRLRIKEEDMRLWLFMSENYL 709

Query: 166  ALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSL 225
             L++D D TL++  IQ +Q +++EV +           +D  + E               
Sbjct: 710  TLLDDEDHTLENLKIQDEQQLVIEVRN-----------KDMSWPE--------------- 743

Query: 226  SIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTC 285
                              E+S   N +S  D        G T      GL+ L   GNTC
Sbjct: 744  ------------------EMSFIAN-SSKMDRHKVPTEKGAT------GLSNL---GNTC 775

Query: 286  FMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM------------------------ 320
            FMNS+IQC+ +T     YF    +  E+N  NP+GM                        
Sbjct: 776  FMNSSIQCVSNTKPLTDYFLSGRHLYELNRTNPIGMRGHMAKCYGDLVMELWSGTQKSVA 835

Query: 321  -----------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEV 357
                                    ELLAFLLDGLHEDLNRV  KPY++ KD++GRPD EV
Sbjct: 836  PLKLRWTIAKYAPRFNGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVELKDSNGRPDWEV 895

Query: 358  ADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTV 417
            A E W NH+ RN SI+VD+  GQ KS + C  C  +S  FDPF +LSLPL   +   + +
Sbjct: 896  ASEAWENHLRRNRSIVVDLFHGQLKSQVKCKTCGHISARFDPFNFLSLPLPMDSYMHLEI 955

Query: 418  TVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF-LDD 476
            TV   +GS  P  Y + +    +   L + L  +C+LK  E++ + E+   +I+ F LD+
Sbjct: 956  TVIKLEGST-PVRYGLRLNMDEKYMGLKKQLSELCNLK-PEQILLTEVHTSNIKNFPLDN 1013

Query: 477  PLISLSTIKDDDHLAAYRVP 496
              + LS    +  L A+ +P
Sbjct: 1014 QKVRLSV---NGFLCAFEIP 1030



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 79/130 (60%), Gaps = 2/130 (1%)

Query: 642  VYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
            + VDW    L  +Y T   E ++E   +   +++A+ EP+SL +CL+AF  EE L  +++
Sbjct: 1254 IAVDWDPTALHLRYQTS-QERIVEEHCSVEQSRRAQAEPISLDSCLKAFTSEEELGEDEL 1312

Query: 701  WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
            +YC +CK  R A+KKLDLWRLP +L++HLKRF        K +  V FP  +F+ + ++A
Sbjct: 1313 YYCSKCKTHRLATKKLDLWRLPPILIVHLKRFQLVNGRWIKSQKIVKFPRENFDPSAFLA 1372

Query: 761  NKNSSRRQLY 770
             ++  +  L+
Sbjct: 1373 PRDLGQHCLH 1382



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 763  NSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYV 822
            N+    +Y LYA++ H G MG GHY  + K   + +WY ++DS    +  +++ + +AY+
Sbjct: 1568 NTCLDAIYNLYAISCHSGIMGGGHYVTYAK-NPKKKWYCYNDSSCKEVQSEEIDADSAYI 1626

Query: 823  LFYRR 827
            LFY +
Sbjct: 1627 LFYEQ 1631


>gi|348567432|ref|XP_003469503.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 32-like [Cavia
           porcellus]
          Length = 1562

 Score =  192 bits (487), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 164/561 (29%), Positives = 239/561 (42%), Gaps = 151/561 (26%)

Query: 18  GDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAED-----PGAGPEIVDTLLEGRDYI 72
           G   ++L H N       ++P  IDN  LV     +       G   +    L+ GRDY 
Sbjct: 464 GANGNILLHLNP------QKPGAIDNQPLVTQEPVKATSLTLEGGRLKRTPQLIHGRDYE 517

Query: 73  LLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELA-VEVYP---LRLQLLVMPRGECSTI 128
           ++P+ VW  L+ WYG    L R VI +  ++TE+  +E++P   L L+     R + S I
Sbjct: 518 MVPEPVWRALYHWYGANLALPRPVIKN--TKTEIPELELFPRYLLFLRQQPATRTQQSNI 575

Query: 129 RI----------------------SKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHA 166
            +                      S+ +TI E+H        +  E + +W Y       
Sbjct: 576 WVNMGNVPSPNAPLKRVLAYTGCFSRMQTIKEIHEYLSQRLRIKEEDMRLWLYNSENYLT 635

Query: 167 LMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLS 226
           L++             D+D  +E L           IQD          +++E     +S
Sbjct: 636 LLD-------------DEDHRLEYL----------KIQDE-------QHLVIEVRNKDMS 665

Query: 227 IAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCF 286
                S    +S+    ++ T                          G TGL NLGNTCF
Sbjct: 666 WPEEMSFIANSSKIDRHKVPTEK------------------------GATGLSNLGNTCF 701

Query: 287 MNSAIQCLVHTPEFARYF---REDYRREINWQNPLGMV---------------------- 321
           MNS+IQC+ +T    +YF   R  Y  E+N  NP+GM                       
Sbjct: 702 MNSSIQCVSNTQPLTQYFISGRHLY--ELNRTNPIGMKGHMAKCYGDLVQELWSGTQKNV 759

Query: 322 -------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEE 356
                                    ELLAFLLDGLHEDLNRV  KPY++ KD+DGRPD E
Sbjct: 760 APLKLRWTIAKYAPRFNGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVELKDSDGRPDWE 819

Query: 357 VADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMT 416
           VA E W NH+ RN SI+VD+  GQ +S + C  C  +SV FDPF +LSLPL   +   + 
Sbjct: 820 VAAEAWDNHLRRNRSIVVDLFHGQLRSQVKCKTCGHISVRFDPFNFLSLPLPMDSYMHLE 879

Query: 417 VTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF-LD 475
           +TV   DG+  P  Y + +    +   L + L ++C LK SE++ +AE+   +I+ F  D
Sbjct: 880 ITVIKLDGTT-PIRYGLRLNMDEKYTGLKKQLSDLCGLK-SEQILLAEVHGSNIKNFPQD 937

Query: 476 DPLISLSTIKDDDHLAAYRVP 496
           +  + LS       L A+ +P
Sbjct: 938 NQKVRLSV---SGFLCAFEIP 955



 Score = 89.4 bits (220), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 74/125 (59%), Gaps = 2/125 (1%)

Query: 642  VYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
            + VDW    L  +Y T   E +++   +   +++A+ EP++L +CL AF  EE L   +M
Sbjct: 1152 IAVDWDPTALHLRYQTS-QERVVDEHDSVEQSRRAQAEPINLDSCLRAFTNEEELGENEM 1210

Query: 701  WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
            +YC +CK    A+KKLDLWRLP +L+IHLKRF +      K +  V FP  +F+ + ++ 
Sbjct: 1211 YYCSKCKTHCLATKKLDLWRLPPILIIHLKRFQFVNGRWIKSQKIVKFPRENFDPSAFLV 1270

Query: 761  NKNSS 765
             ++ +
Sbjct: 1271 PRDPA 1275



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 42/66 (63%), Gaps = 1/66 (1%)

Query: 762  KNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAY 821
            +++  + +Y LYA++ H G +G GHY  + K  +  +WY ++DS    ++ D++ + +AY
Sbjct: 1460 EDTHSKPIYNLYAISCHSGILGGGHYVTYAKNPN-CKWYCYNDSSCKELHPDEIDTDSAY 1518

Query: 822  VLFYRR 827
            +LFY +
Sbjct: 1519 ILFYEQ 1524


>gi|410980578|ref|XP_003996654.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 32 [Felis catus]
          Length = 1275

 Score =  192 bits (487), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 161/545 (29%), Positives = 234/545 (42%), Gaps = 145/545 (26%)

Query: 34  ASKRPSGIDNSDLVNDATAED-----PGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGG 88
           + ++P  IDN  LV     +       G   +    L+ GRDY ++P+ VW  L+ WYG 
Sbjct: 188 SPQKPGAIDNQPLVTQEPVKATSLTLEGGRLKRTPQLIHGRDYEMVPEPVWRALYHWYGA 247

Query: 89  GPTLARKVISSGLSQTELA-VEVYP---LRLQLLVMPRGECSTIRI-------------- 130
              L R VI +  S+TE+  +E++P   L L+     R + S I +              
Sbjct: 248 NLALPRPVIKN--SKTEIPELELFPRYLLFLRQQPATRTQQSNIWVNMGNVPSPNAPLKR 305

Query: 131 --------SKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQM 182
                   S+ +TI E+H        +  E + +W Y       L++             
Sbjct: 306 VLAYTGCFSRMQTIKEIHEYLSQRLRIKEEDMRLWLYNSENYLTLLD------------- 352

Query: 183 DQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHS 242
           D+D  +E L           IQD          +++E     +S     S    +S+   
Sbjct: 353 DEDHRLEYL----------KIQDE-------QHLVIEVRNKDMSWPEEMSFIANSSKIDR 395

Query: 243 SEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFAR 302
            ++ T                          G TGL NLGNTCFMNS+IQC+ +T    +
Sbjct: 396 HKVPTEK------------------------GATGLSNLGNTCFMNSSIQCVSNTQPLTQ 431

Query: 303 YF---REDYRREINWQNPLGMV-------------------------------------- 321
           YF   R  Y  E+N  NP+GM                                       
Sbjct: 432 YFISGRHLY--ELNRTNPIGMKGHMAKCYGDLVQELWSGTQKNVAPLKLRWTIAKYAPRF 489

Query: 322 ---------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSI 372
                    ELLAFLLDGLHEDLNRV  KPY++ KD+DGRPD EVA E W NH+ RN SI
Sbjct: 490 NGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVELKDSDGRPDWEVAAEAWDNHLRRNRSI 549

Query: 373 IVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYT 432
           +VD+  GQ +S + C  C  +SV FDPF +LSLPL   +   + +TV   DG+  P  Y 
Sbjct: 550 VVDLFHGQLRSQVRCKTCGHISVRFDPFNFLSLPLPMDSYMHLEITVIKLDGTT-PVRYG 608

Query: 433 VTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF-LDDPLISLSTIKDDDHLA 491
           + +    +   L + L ++C LK SE++ +AE+   +I+ F  D+  + LS       L 
Sbjct: 609 LRLNMDEKYTGLKKQLSDLCGLK-SEQILLAEVHGSNIKNFPQDNQKVRLSV---SGFLC 664

Query: 492 AYRVP 496
           A+ +P
Sbjct: 665 AFEIP 669



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 76/132 (57%), Gaps = 2/132 (1%)

Query: 642 VYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
           + VDW    L  +Y T   E +++  ++   +++A+ EP++L +CL AF  EE L   +M
Sbjct: 866 IAVDWDPTALHLRYQTS-QERVVDEHESVEQSRRAQAEPINLDSCLRAFTSEEELGENEM 924

Query: 701 WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
           +YC +CK    A+KKLDLWRLP +L+IHLKRF +      K +  V FP   F+ + ++ 
Sbjct: 925 YYCSKCKTHCLATKKLDLWRLPPILIIHLKRFQFVNGRWIKSQKIVKFPRESFDPSAFLV 984

Query: 761 NKNSSRRQLYEL 772
            ++ +  Q   L
Sbjct: 985 PRDPALCQCKPL 996



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 40/61 (65%), Gaps = 1/61 (1%)

Query: 767  RQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYR 826
            + +Y LYA++ H G +G GHY  + K  + ++WY ++DS    ++ D++ + +AY+LFY 
Sbjct: 1178 KPIYNLYAISCHSGILGGGHYVTYAKNPN-SKWYCYNDSSCKELHPDEIDTDSAYILFYE 1236

Query: 827  R 827
            +
Sbjct: 1237 Q 1237


>gi|345330137|ref|XP_001510553.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 32 [Ornithorhynchus
            anatinus]
          Length = 1718

 Score =  192 bits (487), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 163/561 (29%), Positives = 239/561 (42%), Gaps = 151/561 (26%)

Query: 18   GDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAED-----PGAGPEIVDTLLEGRDYI 72
            G   ++L  FN       ++P  IDN  LV     +       G   + +  L+ GRDY 
Sbjct: 620  GANGNILLPFNP------QKPGAIDNQPLVTQEPVKATSLTLEGGRLKRIPQLIHGRDYE 673

Query: 73   LLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELA-VEVYPLRLQLLVM---PRGECSTI 128
            ++P+ VW  L+ WYG    L R VI +  S+T +  +E++P  L  L      R + S I
Sbjct: 674  MVPEPVWRALYHWYGANLALPRPVIKN--SKTNIPELELFPRHLLFLRQQPATRTQQSNI 731

Query: 129  RI----------------------SKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHA 166
             +                      S+ +TI E+H        +  E + +W Y       
Sbjct: 732  WVNMGNVPSPNAPLKRVLAYTGCFSRMQTIKEIHEYLSQRLRIKEEDMRLWLYNSENYLT 791

Query: 167  LMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLS 226
            L++D             +D ++E L           IQD          +++E     +S
Sbjct: 792  LLDD-------------EDHMLEYL----------KIQDE-------QHLVIEVRNKDMS 821

Query: 227  IAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCF 286
                 S    +S+    ++ T                          G TGL NLGNTCF
Sbjct: 822  WPEEMSFIANSSKIDRHKVPTEK------------------------GATGLSNLGNTCF 857

Query: 287  MNSAIQCLVHTPEFARYF---REDYRREINWQNPLGMV---------------------- 321
            MNS+IQC+ +T    +YF   R  Y  E+N  NP+GM                       
Sbjct: 858  MNSSIQCVSNTQPLTQYFISGRHLY--ELNRTNPIGMKGHMAKCYGDLVQELWSGTQKNV 915

Query: 322  -------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEE 356
                                     ELLAFLLDGLHEDLNRV  KPY++ KD+DGRPD E
Sbjct: 916  APLKLRWTIAKYAPRFNGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVELKDSDGRPDWE 975

Query: 357  VADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMT 416
            VA E W NH+ RN SI+VD+  GQ +S + C  C  +SV FDPF +LSLPL   +   + 
Sbjct: 976  VAAEAWENHLRRNRSIVVDLFHGQLRSQVRCKTCRHISVRFDPFNFLSLPLPMDSYMHLE 1035

Query: 417  VTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF-LD 475
            +TV   DG+  P  Y + +    +   L + L ++C LK  E++ +AE+   +I+ F  D
Sbjct: 1036 ITVIKLDGTT-PVRYGLRLNMDEKYTGLKKQLSDLCELK-PEQILLAEVHGSNIKNFPQD 1093

Query: 476  DPLISLSTIKDDDHLAAYRVP 496
            +  + LS    +  L A+ +P
Sbjct: 1094 NQKVRLSV---NGFLCAFEIP 1111



 Score = 92.4 bits (228), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 74/125 (59%), Gaps = 2/125 (1%)

Query: 642  VYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
            + VDW    L  +Y T   E ++E  ++   +++A+ EP++L  CL AF  EE L  ++M
Sbjct: 1308 IAVDWDPTALHLRYQTS-QERIVEEHESVEQSRRAQAEPINLDNCLRAFTNEEELGEDEM 1366

Query: 701  WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
            +YC +CK    A+KKLDLWRLP +L+IHLKRF +      K +  V FP  +FN   ++ 
Sbjct: 1367 YYCSKCKTHCLATKKLDLWRLPPILIIHLKRFQFVNGRWIKSQKIVKFPRENFNPGAFLV 1426

Query: 761  NKNSS 765
             ++ +
Sbjct: 1427 PRDPA 1431



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 1/61 (1%)

Query: 767  RQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYR 826
            + +Y LYA++ H G +G GHY  + K  + N+WY ++DS    ++ D++ + +AY+LFY 
Sbjct: 1621 KPIYNLYAISCHSGILGGGHYVTYAKNPN-NKWYCYNDSSCKELHPDEIDTDSAYILFYE 1679

Query: 827  R 827
            +
Sbjct: 1680 Q 1680


>gi|345800049|ref|XP_546616.3| PREDICTED: ubiquitin carboxyl-terminal hydrolase 43 [Canis lupus
           familiaris]
          Length = 1076

 Score =  191 bits (486), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 174/645 (26%), Positives = 279/645 (43%), Gaps = 125/645 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHT---PEF---ARYFREDYRREIN-------------- 313
           G  GL N GNTCFMN+ +QCL +T    EF    RY     R E+               
Sbjct: 59  GAQGLKNHGNTCFMNAVVQCLSNTDLLAEFLALGRYRAAPGRAEVTEQLAALVRALWTRE 118

Query: 314 --------WQNPLG-------------MVELLAFLLDGLHEDLNRVKHKPYIKSKDADGR 352
                   ++N +               +E L +LLD +HEDL      P  +    +  
Sbjct: 119 YTPQLSAEFKNAVSKYGSQFQGNAQHDALEFLLWLLDRVHEDLEGSSRGPGAEKLQPEAN 178

Query: 353 PDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTT 412
              E      A  ++   S +    Q QY+S+L CP C K S TFDPF+ +SLP+    T
Sbjct: 179 KTPENLPSPPA-QLSLGQSFVQSHFQAQYRSSLTCPHCLKQSNTFDPFLCVSLPIPLRQT 237

Query: 413 RTMTVT-VFTSD-------GSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAE 464
           R ++VT VF S        G A+P   TV        R ++   G+I     ++E+ + E
Sbjct: 238 RFLSVTLVFPSKSQRFLRVGLAVPILSTVAA-----LRKMVSEEGDI----PADEVILVE 288

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRVPK------LVKKAVFLQLIHRLQEQEPG 517
           +  +  QR F D+    L+TI + D++ A+  P       L      L +  RL  +E  
Sbjct: 289 LCPNGFQRSFFDE--EDLNTISEGDNVYAFHAPPPPGQETLSAHPCGLSVSPRLAAREGQ 346

Query: 518 AAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVT 577
               +   K     L+      +++ SG+  S   R   PFL +E             +T
Sbjct: 347 RVPLSVPSKNKVLILIC-----NLVGSGQQAS---RFGPPFLLRED----------RAIT 388

Query: 578 TVDPSGEAHSN----SSSNIAKEDASSSKAVTLPNLPLQLV-----DESNVCFDLSVEGD 628
            V       SN      S +  ++  S  +V +  L L        D   +C   +V+  
Sbjct: 389 WVQLQQRILSNVRCVMKSEVPIQNPGSLFSVRVVGLSLACSYLSPHDSHPLCH-WAVDRA 447

Query: 629 KTIRIPSSSTSIVVYVDW----SQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYT 684
             +R P     I + V+W     ++L        +++   V++     +  +    +L  
Sbjct: 448 MHLRRPGGPPHIKLAVEWESCAKERLFGNLQEERVQDADSVWRQ---QQAHQQHSCTLDE 504

Query: 685 CLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLET 744
           C + + +EE L  +D W CP C+  ++   KL LW LP++L+IHLKRF      ++KL T
Sbjct: 505 CFQFYTKEEQLAQDDAWKCPHCEALQRGMVKLSLWTLPDILIIHLKRFCQVGEKRNKLST 564

Query: 745 FVNFPIHDFNLTKYVANKNS----------SRRQ------------LYELYALTNHYGGM 782
            V FP+   ++  +VA + +          S +Q            LY+LYA+ NH+G +
Sbjct: 565 LVRFPLSGLDMAPHVAQRGAGPPAATGPWPSWKQPACLPAGYPLDSLYDLYAVCNHHGSL 624

Query: 783 GSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             GHYTA+ +   + +WY++DDS + P+ ED+V +  AY+LFY++
Sbjct: 625 QGGHYTAYCRNSLDGQWYSYDDSTVEPLPEDEVNTRGAYILFYQK 669


>gi|296201917|ref|XP_002748235.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 32 [Callithrix
           jacchus]
          Length = 1604

 Score =  191 bits (486), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 164/561 (29%), Positives = 238/561 (42%), Gaps = 151/561 (26%)

Query: 18  GDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAED-----PGAGPEIVDTLLEGRDYI 72
           G   ++L H N       ++P  IDN  LV     +       G   +    L+ GRDY 
Sbjct: 507 GTNGNILLHLNP------QKPGAIDNQPLVTQEPVKATSLTLEGGRLKRTPQLIHGRDYE 560

Query: 73  LLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELA-VEVYP---LRLQLLVMPRGECSTI 128
           ++P+ VW  L+ WYG    L R VI +  S+T++  +E++P   L L+     R + S I
Sbjct: 561 MVPEPVWRALYHWYGANLALPRPVIKN--SKTDIPELELFPRYLLFLRQQPATRTQQSNI 618

Query: 129 RI----------------------SKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHA 166
            +                      S+ +TI E+H        +  E + +W Y       
Sbjct: 619 WVNMGNVPSPNAPLKRVLAYTGCFSRMQTIKEIHEYLSQRLRIKEEDMRLWLYNSENYLT 678

Query: 167 LMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLS 226
           L++             D+D  +E L           IQD          +++E     +S
Sbjct: 679 LLD-------------DEDHRLEYL----------KIQDE-------QHLVIEVRNKDMS 708

Query: 227 IAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCF 286
                S    +S+    ++ T                          G TGL NLGNTCF
Sbjct: 709 WPEEMSFIANSSKIDRHKVPTEK------------------------GATGLSNLGNTCF 744

Query: 287 MNSAIQCLVHTPEFARYF---REDYRREINWQNPLGMV---------------------- 321
           MNS+IQC+ +T    RYF   R  Y  E+N  NP+GM                       
Sbjct: 745 MNSSIQCVSNTQPLTRYFISGRHLY--ELNRTNPIGMKGHMAKCYGDLVQELWSGTQKNV 802

Query: 322 -------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEE 356
                                    ELLAFLLDGLHEDLNRV  KPY++ KD+DGRPD E
Sbjct: 803 APLKLRWTIAKYAPRFNGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVELKDSDGRPDWE 862

Query: 357 VADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMT 416
           VA E W NH+ RN SI+VD+  GQ +S + C  C  +SV FDPF +LSLPL   +   + 
Sbjct: 863 VAAEAWDNHLRRNRSIVVDLFHGQLRSQVRCKTCGHISVRFDPFNFLSLPLPMDSYMHLE 922

Query: 417 VTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF-LD 475
           +TV   DG+  P  Y + +    +   L + L ++C L  SE++ +AE+   +I+ F  D
Sbjct: 923 ITVIKLDGTT-PVRYGLRLNMDEKYTGLKKQLSDLCGL-NSEQILLAEVHGSNIKNFPQD 980

Query: 476 DPLISLSTIKDDDHLAAYRVP 496
           +  + LS       L A+ +P
Sbjct: 981 NQKVRLSV---SGFLCAFEIP 998



 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 74/125 (59%), Gaps = 2/125 (1%)

Query: 642  VYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
            + VDW    L  +Y T   E +++  ++   +++A+ EP++L +CL AF  EE L   +M
Sbjct: 1195 IAVDWDPTALHLRYQTS-QERVVDEHESVEQSRRAQAEPINLDSCLRAFTNEEELGENEM 1253

Query: 701  WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
            +YC +CK    A+KKLDLWRLP +L+IHLKRF +      K +  V FP   F+ + ++ 
Sbjct: 1254 YYCSKCKTHCLATKKLDLWRLPPILIIHLKRFQFVNGRWIKSQKIVKFPRESFDPSAFLV 1313

Query: 761  NKNSS 765
             ++ +
Sbjct: 1314 PRDPA 1318



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 40/62 (64%), Gaps = 3/62 (4%)

Query: 767  RQLYELYALTNHYGGMGSGHYTAHIKLLDEN-RWYNFDDSHISPINEDDVKSAAAYVLFY 825
            + +Y LYA++ H G +G GHY  + K  + N +WY ++DS    ++ D++ + +AY+LFY
Sbjct: 1507 KPIYNLYAISCHSGILGGGHYVTYAK--NPNCKWYCYNDSSCKELHPDEIDTDSAYILFY 1564

Query: 826  RR 827
             +
Sbjct: 1565 EQ 1566


>gi|354477156|ref|XP_003500788.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 32-like [Cricetulus
            griseus]
          Length = 1771

 Score =  191 bits (486), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 165/564 (29%), Positives = 241/564 (42%), Gaps = 151/564 (26%)

Query: 18   GDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAED-----PGAGPEIVDTLLEGRDYI 72
            G   ++L H N       ++P  IDN  LV     +       G   +    L+ GRDY 
Sbjct: 674  GANGNILLHLNP------QKPGAIDNQPLVTQEPVKATSLTLEGGRLKRTPQLIHGRDYE 727

Query: 73   LLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELA-VEVYP---LRLQLLVMPRGECSTI 128
            ++P+ VW  L+ WYG    L R VI +  S+T++  +E++P   L L+     R + S I
Sbjct: 728  MVPEPVWRALYHWYGANLALPRPVIKN--SKTDIPELELFPRYLLFLRQQPATRTQQSNI 785

Query: 129  RI----------------------SKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHA 166
             +                      S+ +TI E+H        +  E + +W Y       
Sbjct: 786  WVNMGNVPSPNAPLKRVLAYTGCFSRMQTIKEIHEYLSQRLRIKEEDMRLWLYNSENYLT 845

Query: 167  LMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLS 226
            L++             D+D  +E L           IQD          +++E     +S
Sbjct: 846  LLD-------------DEDHRLEYL----------KIQDE-------QHLVIEVRNKDMS 875

Query: 227  IAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCF 286
                 S    +S+    ++ T                          G TGL NLGNTCF
Sbjct: 876  WPEEMSFIANSSKIDRHKVPTEK------------------------GATGLSNLGNTCF 911

Query: 287  MNSAIQCLVHTPEFARYF---REDYRREINWQNPLGMV---------------------- 321
            MNS+IQC+ +T    +YF   R  Y  E+N  NP+GM                       
Sbjct: 912  MNSSIQCVSNTQPLTQYFISGRHLY--ELNRTNPIGMKGHMAKCYGDLVQELWSGTQKNV 969

Query: 322  -------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEE 356
                                     ELLAFLLDGLHEDLNRV  KPY++ KD+DGRPD E
Sbjct: 970  APLKLRWTIAKYAPRFNGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVELKDSDGRPDWE 1029

Query: 357  VADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMT 416
            VA E W NH+ RN SI+VD+  GQ +S + C  C  +SV FDPF +LSLPL   +   + 
Sbjct: 1030 VAAEAWDNHLRRNRSIVVDLFHGQLRSQVKCKTCGHISVRFDPFNFLSLPLPMDSYMHLE 1089

Query: 417  VTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF-LD 475
            +TV   DG+  P  Y + +    +   L + L ++C LK SE++ +AE+ + +I+ F  D
Sbjct: 1090 ITVIKLDGTT-PIRYGLRLNMDEKYTGLKKQLSDLCGLK-SEQILLAEVHSSNIKNFPQD 1147

Query: 476  DPLISLSTIKDDDHLAAYRVPKLV 499
            +  + LS       L A+ +P L 
Sbjct: 1148 NQKVRLSV---SGFLCAFEIPILA 1168



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 75/129 (58%), Gaps = 2/129 (1%)

Query: 641  VVYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPED 699
             + VDW    L  +Y T   E ++E  ++   +++A+ EP++L +CL AF  EE L   +
Sbjct: 1361 CIAVDWDPTALHLRYQTS-QERVVEEHESVEQSRRAQAEPINLDSCLRAFTSEEELGENE 1419

Query: 700  MWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYV 759
            M+YC +CK    A+KKLDLWRLP +L+IHLKRF +      K +  V FP   F+ + ++
Sbjct: 1420 MYYCSKCKTHCLATKKLDLWRLPPILIIHLKRFQFVNGRWIKSQKIVKFPRESFDPSAFL 1479

Query: 760  ANKNSSRRQ 768
              ++ +  Q
Sbjct: 1480 VPRDPALCQ 1488



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 43/67 (64%), Gaps = 3/67 (4%)

Query: 762  KNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDEN-RWYNFDDSHISPINEDDVKSAAA 820
            +++  + +Y LYA++ H G +G GHY  + K  + N +WY ++DS    ++ D++ + +A
Sbjct: 1669 EDTHSKPIYNLYAISCHSGILGGGHYVTYAK--NPNCKWYCYNDSSCKELHPDEIDTDSA 1726

Query: 821  YVLFYRR 827
            Y+LFY +
Sbjct: 1727 YILFYEQ 1733


>gi|397494598|ref|XP_003818161.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 43 [Pan paniscus]
          Length = 1115

 Score =  191 bits (485), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 166/651 (25%), Positives = 270/651 (41%), Gaps = 143/651 (21%)

Query: 277 GLLNLGNTCFMNSAIQCLV--------------------------------------HTP 298
           GL N GNTCFMN+ +QCL                                       +TP
Sbjct: 94  GLKNHGNTCFMNAVVQCLSNTDLLAEFLALGRYQAAPGRAEVTEQLAALVRALWTREYTP 153

Query: 299 EFARYFR---EDYRREINWQNPLGMVELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDE 355
           + +  F+     Y  +    +    +E L +LLD +HEDL      P  +    +     
Sbjct: 154 QLSAEFKNAVSKYGSQFQGNSQHDALEFLLWLLDRVHEDLEGSSRGPVSEKLPPEATKTS 213

Query: 356 EVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTM 415
           E      A  +    S +    Q QY+S+L CP C K S TFDPF+ +SLP+    TR +
Sbjct: 214 ENCLSPSA-QLPLGQSFVQSHFQAQYRSSLTCPHCLKQSNTFDPFLCVSLPIPLRQTRFL 272

Query: 416 TVT-VFTSD-------GSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQN 467
           +VT VF S        G A+P   TV        R ++   G +     ++E+ + E+  
Sbjct: 273 SVTLVFPSKSQRFLRVGLAVPILSTVAA-----LRKMVAEEGGV----PADEVILVELYP 323

Query: 468 HSIQR-FLDDPLISLSTIKDDDHLAAYRVPK------LVKKAVFLQLIHRLQEQEP---- 516
              QR F D+    L+TI + D++ A++VP       L    + L    RL  +E     
Sbjct: 324 SGFQRSFFDEE--DLNTIAEGDNVYAFQVPPSPSQGTLSAHPLGLSASPRLAAREGQRFS 381

Query: 517 -----------------GAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFL 559
                            G+ Q  S+   +G P +  I  D  +S  ++Q ++   +   +
Sbjct: 382 LSLHSESKVLILFCNLVGSGQQASR---FGPPFL--IREDRAVSWAQLQQSILSKVRHLM 436

Query: 560 KKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNV 619
           K E+ +                      N  S  +      S A +     L   D   +
Sbjct: 437 KSEAPVQ---------------------NLGSLFSIRVVGLSVACSY----LSPKDSRPL 471

Query: 620 CFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEK-YNTHFLENLLEVFKNGPVTKKARTE 678
           C   +V+    +R P     + + V+W   + E+ + +   E   +        +  +  
Sbjct: 472 C-HWAVDRVLHLRRPGGPPHVKLAVEWDSSVKERLFGSLQEERAQDADSVWQQQQAHQQH 530

Query: 679 PLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM 738
             +L  C + + +EE L  +D W CP C+  +Q   KL LW LP++L+IHLKRF      
Sbjct: 531 SCTLDECFQFYTKEEQLAQDDAWKCPHCQVLQQGMVKLSLWTLPDILIIHLKRFCQVGER 590

Query: 739 KHKLETFVNFPIHDFNLTKYVANKNSSRRQ----------------------LYELYALT 776
           ++KL T V FP+   N+  +VA +++S                         LY+LYA+ 
Sbjct: 591 RNKLSTLVKFPLSGLNMAPHVAQRSTSPEAGLGPWPSWKQPDCLPTSYPLDFLYDLYAVC 650

Query: 777 NHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           NH+G +  GHYTA+ +   + +WY++DDS + P+ ED+V +  AY+LFY++
Sbjct: 651 NHHGNLQGGHYTAYCRNSLDGQWYSYDDSTVEPLREDEVNTRGAYILFYQK 701


>gi|351698664|gb|EHB01583.1| Ubiquitin carboxyl-terminal hydrolase 32 [Heterocephalus glaber]
          Length = 1565

 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 164/561 (29%), Positives = 239/561 (42%), Gaps = 151/561 (26%)

Query: 18  GDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAED-----PGAGPEIVDTLLEGRDYI 72
           G   ++L H N       ++P  IDN  LV     +       G   +    L+ GRDY 
Sbjct: 467 GANGNILLHLNP------QKPGAIDNQPLVTQEPVKATSLTLEGGRLKRTPQLIHGRDYE 520

Query: 73  LLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELA-VEVYP---LRLQLLVMPRGECSTI 128
           ++P+ VW  L+ WYG    L R VI +  S+T++  +E++P   L L+     R + S I
Sbjct: 521 MVPEPVWRALYHWYGANLALPRPVIKN--SKTDIPELELFPRYLLFLRQQPATRTQQSNI 578

Query: 129 RI----------------------SKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHA 166
            +                      S+ +TI E+H        +  E + +W Y       
Sbjct: 579 WVNMGNVPSPNAPLKRVLAYTGCFSRMQTIKEIHEYLSQRLRIKEEDMRLWLYNSENYLT 638

Query: 167 LMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLS 226
           L++             D+D  +E L           IQD          +++E     +S
Sbjct: 639 LLD-------------DEDHRLEYL----------KIQDE-------QHLVIEVRNKDMS 668

Query: 227 IAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCF 286
                S    +S+    ++ T                          G TGL NLGNTCF
Sbjct: 669 WPEEMSFIANSSKIDRHKVPTEK------------------------GATGLSNLGNTCF 704

Query: 287 MNSAIQCLVHTPEFARYF---REDYRREINWQNPLGMV---------------------- 321
           MNS+IQC+ +T    +YF   R  Y  E+N  NP+GM                       
Sbjct: 705 MNSSIQCVSNTQPLTQYFISGRHLY--ELNRTNPIGMKGHMAKCYGDLVQELWSGTQKNV 762

Query: 322 -------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEE 356
                                    ELLAFLLDGLHEDLNRV  KPY++ KD+DGRPD E
Sbjct: 763 APLKLRWTIAKYAPRFNGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVELKDSDGRPDWE 822

Query: 357 VADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMT 416
           VA E W NH+ RN SI+VD+  GQ +S + C  C  +SV FDPF +LSLPL   +   + 
Sbjct: 823 VAAEAWDNHLRRNRSIVVDLFHGQLRSQVKCKTCGHISVRFDPFNFLSLPLPMDSYMHLE 882

Query: 417 VTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF-LD 475
           +TV   DG+  P  Y + +    +   L + L ++C LK SE++ +AE+   +I+ F  D
Sbjct: 883 ITVIKLDGTT-PIRYGLRLNMDEKYTGLKKQLSDLCGLK-SEQILLAEVHGSNIKNFPQD 940

Query: 476 DPLISLSTIKDDDHLAAYRVP 496
           +  + LS       L A+ +P
Sbjct: 941 NQKVRLSV---SGFLCAFEIP 958



 Score = 86.7 bits (213), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 74/132 (56%), Gaps = 2/132 (1%)

Query: 642  VYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
            + VDW    L  +Y T   E +++   +   +++A+ EP++L +CL AF  EE L   +M
Sbjct: 1155 IAVDWDPTALHLRYQTS-QERVVDEHDSVEQSRRAQAEPINLDSCLRAFTSEEELGENEM 1213

Query: 701  WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
            +YC +CK    A+KKLDLWRLP VL+IHLKRF +      K +  V FP    + + ++ 
Sbjct: 1214 YYCSKCKTHCLATKKLDLWRLPPVLIIHLKRFQFVNGRWIKSQKIVKFPRESLDPSAFLV 1273

Query: 761  NKNSSRRQLYEL 772
             ++ +  Q   L
Sbjct: 1274 PRDPALCQCKPL 1285



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 43/67 (64%), Gaps = 3/67 (4%)

Query: 762  KNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDEN-RWYNFDDSHISPINEDDVKSAAA 820
            +++  + +Y LYA++ H G +G GHY  + K  + N +WY ++DS    ++ D++ + +A
Sbjct: 1463 EDTHSKPIYNLYAISCHSGILGGGHYVTYAK--NPNCKWYCYNDSSCKELHPDEIDTDSA 1520

Query: 821  YVLFYRR 827
            Y+LFY +
Sbjct: 1521 YILFYEQ 1527


>gi|363738688|ref|XP_003642052.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19-like [Gallus
           gallus]
          Length = 1367

 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 118/293 (40%), Positives = 157/293 (53%), Gaps = 59/293 (20%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLGM------------ 320
           G TGL+NLGNTCFMNS IQ L +T E   YF +  +  EIN+ NPLG             
Sbjct: 591 GFTGLVNLGNTCFMNSVIQSLSNTRELRDYFHDRSFESEINYNNPLGTGGRLAIGFAMLL 650

Query: 321 -----------------------------------VELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 651 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 710

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC+KVS+TFDPF+YL +
Sbjct: 711 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCSKVSITFDPFLYLPV 770

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSL--KQSEELKVA 463
           PL     + +TV  F  +    P  + V++ K       ++VL ++      + + L++A
Sbjct: 771 PL-PQKQKVLTVYYFAKEPHKKPIKFLVSISKEN--SSAMEVLDSVAHSVHVKPDNLRLA 827

Query: 464 EIQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           E+  +  QR FL  P  SL T+   D L  + V  P+L K + V LQ+  R Q
Sbjct: 828 EVIKNRFQRMFL--PSQSLDTVSPTDLLLCFEVLSPELAKERVVELQVQQRPQ 878



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 83/224 (37%), Positives = 130/224 (58%), Gaps = 13/224 (5%)

Query: 614  VDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTK 673
            +D +N  + L  +GD  + +    +  +V+ +   + L+++     + L  V      ++
Sbjct: 1107 IDAANKEYKLEDKGDTPLELTDDCSLALVWKN--NERLKEFVLVESKELECVEDPSSASE 1164

Query: 674  KARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFS 733
             AR    +L  CL  F + E L PE+ WYCP+CK+ R+ASK+L LWRLP VL+I LKRFS
Sbjct: 1165 AARAGHFTLEQCLNLFTKPEVLAPEEAWYCPKCKQHREASKQLMLWRLPNVLIIQLKRFS 1224

Query: 734  YSRSM--KHKLETFVNFPIHDFNLTKY-VANKNSSRRQLYELYALTNHYGGMGSGHYTAH 790
            + RS   + K+   V+FP+   +L+K+ +  K   +  +Y+LYA+ NHYGGM  GHYTA+
Sbjct: 1225 F-RSFIWRDKINDMVDFPVRSLDLSKFCIGRKGEQQLPMYDLYAVINHYGGMIGGHYTAY 1283

Query: 791  IKLLDENR-------WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             +L ++         W  FDDS ++ ++E  V +  AYVLFYRR
Sbjct: 1284 ARLPNDKNSQRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRR 1327


>gi|145528155|ref|XP_001449877.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124417466|emb|CAK82480.1| unnamed protein product [Paramecium tetraurelia]
          Length = 877

 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 201/809 (24%), Positives = 328/809 (40%), Gaps = 173/809 (21%)

Query: 63  DTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELA-------VEVYPLRL 115
           + L E  DYI++ +E+W    ++Y G P + R    SG+ +T          V +YP+ +
Sbjct: 111 ENLQENVDYIIVDKEIWQFFTTYYHGTP-IVRLSNGSGIEKTVAVNLLKFKTVLLYPVVI 169

Query: 116 QLLVMPRGECSTI--------RISKKETIGELHRRACSIFYLNLEQ---ICIWDYYGHRK 164
           + +   R    T         R  K +    L  +  + F  N  +   + IW +   +K
Sbjct: 170 KQIAFDRFYKQTFDQEYLQVDRNMKLKDYYSLLSKTVTTFTGNFAKDNNVRIWRFQSDQK 229

Query: 165 ---HALMNDMDR--------------------------TLDDANIQMDQDILVEVLDNVN 195
               A   D+ +                          T++D  I  +  I++E  D V 
Sbjct: 230 DIFKAFFADVQKQVGVLETNDEMSFDFNGDYIHYSIYDTIEDVGILDNHLIIIEFKDEVK 289

Query: 196 GTNCKS-SIQDNGFAEK-KASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLAS 253
               ++ ++Q  G  E  +   +L  P    +     + +     +++        N  S
Sbjct: 290 PWCIRNKAVQVEGKCENCQIVKILNHPC---VCRKVSYCSQDCKYKDY--------NYHS 338

Query: 254 ARDSDNTLGSSGVTTRGAS------VGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED 307
            R      GS   T RG S       GL GL NLGNTCFMNS  QC+ +T     YF  +
Sbjct: 339 MRCE--KFGSDDDTIRGLSQQPNSIAGLAGLSNLGNTCFMNSGTQCISNTVPLTEYFLSN 396

Query: 308 -YRREINWQNPLGM---------------------------------------------- 320
            Y  EIN  NP+G                                               
Sbjct: 397 QYFDEINMDNPIGTKGQLVKRVGALLKKLWYGEKQVVTPTNYKKAVGQFQPMFKGYHQHD 456

Query: 321 -VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQG 379
             EL+ F+LDG+HEDLNRVK KPY+++KD+D R D  VA E W+NH+ARN SIIVD+  G
Sbjct: 457 SSELITFVLDGIHEDLNRVKKKPYVETKDSDERTDFVVAKESWSNHLARNQSIIVDLMYG 516

Query: 380 QYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHG 439
           QYKSTL CP C ++S+TFDP++ + L + +   RT++   F S  ++          K+ 
Sbjct: 517 QYKSTLKCPRCERLSITFDPYLMVQLGIPSQKKRTISFKYFYSFFNSTSKIIPFDKNKNI 576

Query: 440 RCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLV 499
             ++  QVL        SEELK       ++  ++ +   S   +K+   +   R     
Sbjct: 577 SLKEYYQVL--------SEELKTKP---QNLLGYIANQYTSFELLKESKSIIEIRKSAKR 625

Query: 500 KKAVFLQLI-HRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSG-----KIQSTVQR 553
           ++  F  L     Q Q     Q +++++ Y    +S       I  G     ++   + +
Sbjct: 626 QQLCFRALTDEEAQTQNKFPVQFSNKYQDYQK--MSYFQSGFFIFEGSTTRKQMHLKIFQ 683

Query: 554 MLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQL 613
            L P   +   +  +    +   +    S   + N  S    ++                
Sbjct: 684 YLQPLFAEYQNLDYEKNVFNKYYSLFYKSNSNYWNPCSYCQSKNC--------------- 728

Query: 614 VDESNVCFDLSVEGDKTIRIPSSST--SIVVYVDWSQ------KLLEKYNTHFLENLLEV 665
            ++  V FD  V  +   ++ +S T  +  V + W +      K+ E +N +   NL ++
Sbjct: 729 -NDCEVKFDDEVLEETKSKVTASDTQCNFEVIILWKESPFKSVKISEIFNHY--RNLNKI 785

Query: 666 FKN---------GPVTKKARTEP-LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKK 715
             N           + K +  EP ++L  CL+   + E L  E+ WYC  C+E  QA K 
Sbjct: 786 ESNFLSKCNSRRTRIIKNSTPEPCVTLADCLQFSQQPEQLNSENTWYCKVCQEHVQAFKS 845

Query: 716 LDLWRLPEVLVIHLKRFSYS-RSMKHKLE 743
           + +++ P++L+  LKRF  S R  K KLE
Sbjct: 846 MQIYKAPQILIFTLKRFKASNRMFKQKLE 874


>gi|327283828|ref|XP_003226642.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 32-like [Anolis
           carolinensis]
          Length = 1599

 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 153/527 (29%), Positives = 225/527 (42%), Gaps = 147/527 (27%)

Query: 34  ASKRPSGIDNSDLVNDATAEDPGAGPEIV---------DTLLEGRDYILLPQEVWNQLHS 84
           + +RP  IDN  LV     +DP   P +            L++G+ Y ++P+ VW  L+ 
Sbjct: 514 SPQRPGAIDNQPLV----TQDPMKAPTLTLEGGRLKQSPPLVQGKSYEIVPEPVWRALYH 569

Query: 85  WYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVM---PRGECSTIRI----------- 130
           WYG   +L R VI +  ++    +E++P  L  L      R + S I +           
Sbjct: 570 WYGANLSLPRPVIVNNATRHP-ELELFPRYLLFLRQQPATRTQQSNIWVNMGNVPSPSAP 628

Query: 131 -----------SKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDAN 179
                      S+ +TI E+H        +  E + +W Y       L++D D TL+  N
Sbjct: 629 LKRVLAYTGCFSRMQTIKEIHEYLSQRLRIKEEDMRLWLYNSENYLTLLDDEDHTLEYLN 688

Query: 180 IQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSR 239
                                  IQD+         +++E     +S     S    +S+
Sbjct: 689 -----------------------IQDD-------QHLIIEVRNKDMSWPEEMSFIANSSK 718

Query: 240 NHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPE 299
               ++ T                          G TGL NLGNTCFMNS+IQC+ +T  
Sbjct: 719 IDRHKVPTEK------------------------GATGLSNLGNTCFMNSSIQCVSNTQP 754

Query: 300 FARYF---REDYRREINWQNPLGMV----------------------------------- 321
             +YF   R  Y  E+N  NP+GM                                    
Sbjct: 755 LTQYFISGRHLY--ELNRTNPIGMKGHMAKCYGDLIQELWSGTQKNIAPLKLRWTIAKYA 812

Query: 322 ------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARN 369
                       ELLAFLLDGLHEDLNRV  KPY++ KD+DGRPD EVA E W NH+ RN
Sbjct: 813 PRFNGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVELKDSDGRPDWEVAAEAWENHLRRN 872

Query: 370 DSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPS 429
            SI+VD+  GQ +S + C  C  +SV FDPF +LSLPL   +   + + V   DG+  P 
Sbjct: 873 RSIVVDLFHGQLRSQVKCKTCGHISVRFDPFNFLSLPLPMDSYMHIEIIVTKLDGTT-PV 931

Query: 430 TYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDD 476
            Y + +    +   L + L ++C+LK  E++ +AE+ + +I+ F  D
Sbjct: 932 RYGLRLNMDEKYTGLKKHLSDLCALK-PEQILLAEVHSSNIKNFPQD 977



 Score = 95.1 bits (235), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/123 (39%), Positives = 74/123 (60%), Gaps = 2/123 (1%)

Query: 644  VDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWY 702
            VDW    L  +Y T   E + E  ++   +++A+ EP++L +CL AF  EE L  ++M+Y
Sbjct: 1195 VDWDPTALHLRYQTS-QERIAEEHRSVEQSRRAQAEPINLDSCLRAFTGEEELGEDEMYY 1253

Query: 703  CPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANK 762
            C +CK    A+KKLDLWRLP +L+IHLKRF +      K +  V FP  DFN + ++  +
Sbjct: 1254 CSKCKTHCLATKKLDLWRLPPILIIHLKRFQFVNGRWIKSQKIVKFPREDFNPSAFLMPR 1313

Query: 763  NSS 765
            + S
Sbjct: 1314 DPS 1316



 Score = 53.9 bits (128), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 39/59 (66%), Gaps = 1/59 (1%)

Query: 769  LYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            +Y LYA++ H G MG GHY  + K  ++ +WY ++DS    ++ D++ + +AY+LFY +
Sbjct: 1504 IYNLYAISCHSGIMGGGHYVTYAKNPND-KWYCYNDSSCKELHPDEIDTDSAYILFYEQ 1561


>gi|148683809|gb|EDL15756.1| mCG11277 [Mus musculus]
          Length = 1472

 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 164/561 (29%), Positives = 239/561 (42%), Gaps = 151/561 (26%)

Query: 18  GDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAED-----PGAGPEIVDTLLEGRDYI 72
           G   ++L H N       ++P  IDN  LV     +       G   +    L+ GRDY 
Sbjct: 375 GANGNILLHLNP------QKPGAIDNQPLVTQEPVKATSLTLEGGRLKRTPQLIHGRDYE 428

Query: 73  LLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELA-VEVYP---LRLQLLVMPRGECSTI 128
           ++P+ VW  L+ WYG    L R VI +  S+T++  +E++P   L L+     R + S I
Sbjct: 429 MVPEPVWRALYHWYGSNLALPRPVIKN--SKTDIPELELFPRYLLFLRQQPATRTQQSNI 486

Query: 129 RI----------------------SKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHA 166
            +                      S+ +TI E+H        +  E + +W Y       
Sbjct: 487 WVNMGNVPSPNAPLKRVLAYTGCFSRMQTIKEIHEYLSQRLRIKEEDMRLWLYNSENYLT 546

Query: 167 LMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLS 226
           L++             D+D  +E L           IQD          +++E     +S
Sbjct: 547 LLD-------------DEDHRLEYL----------KIQDE-------QHLVIEVRNKDMS 576

Query: 227 IAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCF 286
                S    +S+    ++ T                          G TGL NLGNTCF
Sbjct: 577 WPEEMSFIANSSKIDRHKVPTEK------------------------GATGLSNLGNTCF 612

Query: 287 MNSAIQCLVHTPEFARYF---REDYRREINWQNPLGMV---------------------- 321
           MNS+IQC+ +T    +YF   R  Y  E+N  NP+GM                       
Sbjct: 613 MNSSIQCVSNTQPLTQYFISGRHLY--ELNRTNPIGMKGHMAKCYGDLVQELWSGTQKNV 670

Query: 322 -------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEE 356
                                    ELLAFLLDGLHEDLNRV  KPY++ KD+DGRPD E
Sbjct: 671 APLKLRWTIAKYAPRFNGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVELKDSDGRPDWE 730

Query: 357 VADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMT 416
           VA E W NH+ RN SI+VD+  GQ +S + C  C  +SV FDPF +LSLPL   +   + 
Sbjct: 731 VAAEAWDNHLRRNRSIVVDLFHGQLRSQVKCKTCGHISVRFDPFNFLSLPLPMDSYMHLE 790

Query: 417 VTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF-LD 475
           +TV   DG+  P  Y + +    +   L + L ++C LK SE++  AE+ + +I+ F  D
Sbjct: 791 ITVIKLDGTT-PIRYGLRLNMDEKYTGLKKQLSDLCGLK-SEQILFAEVHSSNIKNFPQD 848

Query: 476 DPLISLSTIKDDDHLAAYRVP 496
           +  + LS       L A+ +P
Sbjct: 849 NQKVRLSV---SGFLCAFEIP 866



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 74/126 (58%), Gaps = 2/126 (1%)

Query: 641  VVYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPED 699
             + VDW    L  +Y T   E ++E  ++   +++A+ EP++L +CL AF  EE L   +
Sbjct: 1062 CIAVDWDPTALHLRYQTS-QERVVEEHESVEQSRRAQAEPINLDSCLRAFTSEEELGENE 1120

Query: 700  MWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYV 759
            M+YC +CK    A+KKLDLWRLP +L+IHLKRF +      K +  V FP   F+ + ++
Sbjct: 1121 MYYCSKCKTHCLATKKLDLWRLPPILIIHLKRFQFVNGRWIKSQKIVKFPRESFDPSAFL 1180

Query: 760  ANKNSS 765
              ++ +
Sbjct: 1181 VPRDPT 1186



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 40/62 (64%), Gaps = 3/62 (4%)

Query: 767  RQLYELYALTNHYGGMGSGHYTAHIKLLDEN-RWYNFDDSHISPINEDDVKSAAAYVLFY 825
            + +Y LYA++ H G +G GHY  + K  + N +WY ++DS    ++ D++ + +AY+LFY
Sbjct: 1375 KPIYNLYAISCHSGILGGGHYVTYAK--NPNCKWYCYNDSSCKELHPDEIDTDSAYILFY 1432

Query: 826  RR 827
             +
Sbjct: 1433 EQ 1434


>gi|126032299|ref|NP_001025105.1| ubiquitin specific protease 32 [Mus musculus]
 gi|162317806|gb|AAI56266.1| Ubiquitin specific peptidase 32 [synthetic construct]
          Length = 1604

 Score =  190 bits (483), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 164/561 (29%), Positives = 239/561 (42%), Gaps = 151/561 (26%)

Query: 18  GDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAED-----PGAGPEIVDTLLEGRDYI 72
           G   ++L H N       ++P  IDN  LV     +       G   +    L+ GRDY 
Sbjct: 507 GANGNILLHLNP------QKPGAIDNQPLVTQEPVKATSLTLEGGRLKRTPQLIHGRDYE 560

Query: 73  LLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELA-VEVYP---LRLQLLVMPRGECSTI 128
           ++P+ VW  L+ WYG    L R VI +  S+T++  +E++P   L L+     R + S I
Sbjct: 561 MVPEPVWRALYHWYGSNLALPRPVIKN--SKTDIPELELFPRYLLFLRQQPATRTQQSNI 618

Query: 129 RI----------------------SKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHA 166
            +                      S+ +TI E+H        +  E + +W Y       
Sbjct: 619 WVNMGNVPSPNAPLKRVLAYTGCFSRMQTIKEIHEYLSQRLRIKEEDMRLWLYNSENYLT 678

Query: 167 LMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLS 226
           L++             D+D  +E L           IQD          +++E     +S
Sbjct: 679 LLD-------------DEDHRLEYL----------KIQDE-------QHLVIEVRNKDMS 708

Query: 227 IAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCF 286
                S    +S+    ++ T                          G TGL NLGNTCF
Sbjct: 709 WPEEMSFIANSSKIDRHKVPTEK------------------------GATGLSNLGNTCF 744

Query: 287 MNSAIQCLVHTPEFARYF---REDYRREINWQNPLGMV---------------------- 321
           MNS+IQC+ +T    +YF   R  Y  E+N  NP+GM                       
Sbjct: 745 MNSSIQCVSNTQPLTQYFISGRHLY--ELNRTNPIGMKGHMAKCYGDLVQELWSGTQKNV 802

Query: 322 -------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEE 356
                                    ELLAFLLDGLHEDLNRV  KPY++ KD+DGRPD E
Sbjct: 803 APLKLRWTIAKYAPRFNGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVELKDSDGRPDWE 862

Query: 357 VADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMT 416
           VA E W NH+ RN SI+VD+  GQ +S + C  C  +SV FDPF +LSLPL   +   + 
Sbjct: 863 VAAEAWDNHLRRNRSIVVDLFHGQLRSQVKCKTCGHISVRFDPFNFLSLPLPMDSYMHLE 922

Query: 417 VTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF-LD 475
           +TV   DG+  P  Y + +    +   L + L ++C LK SE++  AE+ + +I+ F  D
Sbjct: 923 ITVIKLDGTT-PIRYGLRLNMDEKYTGLKKQLSDLCGLK-SEQILFAEVHSSNIKNFPQD 980

Query: 476 DPLISLSTIKDDDHLAAYRVP 496
           +  + LS       L A+ +P
Sbjct: 981 NQKVRLSV---SGFLCAFEIP 998



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 74/126 (58%), Gaps = 2/126 (1%)

Query: 641  VVYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPED 699
             + VDW    L  +Y T   E ++E  ++   +++A+ EP++L +CL AF  EE L   +
Sbjct: 1194 CIAVDWDPTALHLRYQTS-QERVVEEHESVEQSRRAQAEPINLDSCLRAFTSEEELGENE 1252

Query: 700  MWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYV 759
            M+YC +CK    A+KKLDLWRLP +L+IHLKRF +      K +  V FP   F+ + ++
Sbjct: 1253 MYYCSKCKTHCLATKKLDLWRLPPILIIHLKRFQFVNGRWIKSQKIVKFPRESFDPSAFL 1312

Query: 760  ANKNSS 765
              ++ +
Sbjct: 1313 VPRDPT 1318



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 40/62 (64%), Gaps = 3/62 (4%)

Query: 767  RQLYELYALTNHYGGMGSGHYTAHIKLLDEN-RWYNFDDSHISPINEDDVKSAAAYVLFY 825
            + +Y LYA++ H G +G GHY  + K  + N +WY ++DS    ++ D++ + +AY+LFY
Sbjct: 1507 KPIYNLYAISCHSGILGGGHYVTYAK--NPNCKWYCYNDSSCKELHPDEIDTDSAYILFY 1564

Query: 826  RR 827
             +
Sbjct: 1565 EQ 1566


>gi|13560797|gb|AAK30207.1|AF350251_1 ubiquitin specific protease [Homo sapiens]
          Length = 1274

 Score =  190 bits (483), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 163/561 (29%), Positives = 239/561 (42%), Gaps = 151/561 (26%)

Query: 18  GDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAED-----PGAGPEIVDTLLEGRDYI 72
           G   ++L H N       ++P  IDN  LV     +       G   +    L+ GRDY 
Sbjct: 177 GANGNILLHLNP------QKPGAIDNQPLVTQEPVKATSLTLEGGRLKRTPQLIHGRDYE 230

Query: 73  LLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELA-VEVYP---LRLQLLVMPRGECSTI 128
           ++P+ VW  L+ WYG    L R VI +  S+T++  +E++P   L L+     R + S I
Sbjct: 231 MVPEPVWRALYHWYGANLALPRPVIKN--SKTDIPELELFPRYLLFLRQQPATRTQQSNI 288

Query: 129 RI----------------------SKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHA 166
            +                      S+ +TI E+H        +  E + +W Y       
Sbjct: 289 WVNMGNVPSPNAPLKRVLAYTGCFSRMQTIKEIHEYLSQRLRIKEEDMRLWLYNSENYLT 348

Query: 167 LMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLS 226
           L++             D+D  +E L           IQD          +++E     +S
Sbjct: 349 LLD-------------DEDHKLEYL----------KIQDE-------QHLVIEVRNKDMS 378

Query: 227 IAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCF 286
                S    +S+    ++ T                          G TGL NLGNTCF
Sbjct: 379 WPEEMSFIANSSKIDRHKVPTEK------------------------GATGLSNLGNTCF 414

Query: 287 MNSAIQCLVHTPEFARYF---REDYRREINWQNPLGMV---------------------- 321
           MNS+IQC+ +T    +YF   R  Y  E+N  NP+GM                       
Sbjct: 415 MNSSIQCVSNTQPLTQYFISGRHLY--ELNRTNPIGMKGHMAKCYGDLVQELWSGTQKNV 472

Query: 322 -------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEE 356
                                    ELLAFLLDGLHEDLNRV  KPY++ KD+DGRPD E
Sbjct: 473 APLKLRWTIAKYAPRFNGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVELKDSDGRPDWE 532

Query: 357 VADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMT 416
           VA E W NH+ RN SI+VD+ +GQ +S + C  C  +SV FDPF +LSLPL   +   + 
Sbjct: 533 VAAEAWDNHLRRNRSIVVDLFRGQLRSQVKCKTCGHISVRFDPFNFLSLPLPMDSYMHLE 592

Query: 417 VTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF-LD 475
           +TV   DG+  P  Y + +    +   L + L ++C L  SE++ +AE+   +I+ F  D
Sbjct: 593 ITVIKLDGTT-PVRYGLRLNMDEKYTGLKKQLSDLCGLN-SEQILLAEVHGSNIKNFPQD 650

Query: 476 DPLISLSTIKDDDHLAAYRVP 496
           +  + LS       L A+ +P
Sbjct: 651 NQKVRLSV---SGFLCAFEIP 668



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 74/125 (59%), Gaps = 2/125 (1%)

Query: 642 VYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
           + VDW    L  +Y T   E +++  ++   +++A+ EP++L +CL AF  EE L   +M
Sbjct: 865 IAVDWDPTALHLRYQTS-QERVVDEHESVEQSRRAQAEPINLDSCLRAFTSEEELGENEM 923

Query: 701 WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
           +YC +CK    A+KKLDLWRLP +L+IHLKRF +      K +  V FP   F+ + ++ 
Sbjct: 924 YYCSKCKTHCLATKKLDLWRLPPILIIHLKRFQFVNGRWIKSQKIVKFPRESFDPSAFLV 983

Query: 761 NKNSS 765
            ++ +
Sbjct: 984 PRDPA 988



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 40/62 (64%), Gaps = 3/62 (4%)

Query: 767  RQLYELYALTNHYGGMGSGHYTAHIKLLDEN-RWYNFDDSHISPINEDDVKSAAAYVLFY 825
            + +Y LYA++ H G +G GHY  + K  + N +WY ++DS    ++ D++ + +AY+LFY
Sbjct: 1177 KPIYNLYAISCHSGILGGGHYVTYAK--NPNCKWYCYNDSSCKELHPDEIDTDSAYILFY 1234

Query: 826  RR 827
             +
Sbjct: 1235 EQ 1236


>gi|170086692|ref|XP_001874569.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164649769|gb|EDR14010.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1273

 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 156/529 (29%), Positives = 226/529 (42%), Gaps = 121/529 (22%)

Query: 65  LLEGRDYILLPQEVWNQLHSWYGGGPT-LARKVISSGLSQTELAVEVYPLRLQLLVMPRG 123
           L EG +   +P+ VW    +WYG     + R+VI+ G ++   ++E+YPL+L+   + R 
Sbjct: 174 LGEGVEVQYVPEIVWTSFVTWYGPPQQPVPRRVIARGSAKLP-SLELYPLQLKAFRLVRE 232

Query: 124 ECST---------IRISKKETIGELHRRACSIFYLNLEQICI------------WDYYGH 162
           +            + IS  ET+G L          NLE                W+Y  +
Sbjct: 233 DPQAGSNESPFPKLVISAGETVGNLCSELVKAVSPNLETHIPYRVWKLENGHGEWEYGEY 292

Query: 163 RKHAL-------MNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASS 215
               L       + +  +TL++  IQ D   +VE                      K  +
Sbjct: 293 PSSQLTISGGKIIEESHKTLEEEGIQADDAFVVEF---------------------KQDT 331

Query: 216 VLVEPSKSSLSIAG---------GWSASKGTSRNHSSEISTSPNLA------SARDSDNT 260
            +VEP KS+    G         G+    G     SS  S+  +        S++ S   
Sbjct: 332 WIVEPPKSAAKSLGPPPLFSSKDGFFNKLGRKTLASSTTSSYKSGGDFYSGLSSKSSGFP 391

Query: 261 LGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLG 319
           L +    T+    G  GL N+GNTCFMNSA+QCL HT E + YF    ++ E+N  NPLG
Sbjct: 392 LSTGKSITKALEPGTLGLGNMGNTCFMNSALQCLAHTKELSDYFLTGVFQDELNPGNPLG 451

Query: 320 M-------------------------------------------------VELLAFLLDG 330
           M                                                  EL+AFLLDG
Sbjct: 452 MGGAIAEVFGALLERIWATEGPSNSYSPREFKTQLQRFAPQFSGYQQHDSQELVAFLLDG 511

Query: 331 LHEDLNRVKHKPYIKSKDADGRPDEEV---ADEYWANHIARNDSIIVDVCQGQYKSTLVC 387
           LHEDLNRV  KPY++  D +G    E+   A + W  ++ RNDS+IVD+ QGQY+STLVC
Sbjct: 512 LHEDLNRVLKKPYVEKPDWEGGDHLELVRLAQKSWEGYMLRNDSVIVDLFQGQYQSTLVC 571

Query: 388 PVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQV 447
           P C KVS+TFDPFMYL+LPL        T+     D         V + +    +DL  +
Sbjct: 572 PECQKVSITFDPFMYLTLPLPVQKKWKHTIFYIPWDSDKAHVKIPVEINRDSSFKDLRNL 631

Query: 448 LGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVP 496
           LG    +  ++ L   EI NH   + LDD L+    + + D +  + +P
Sbjct: 632 LGRWMGVP-ADNLLTMEIFNHRFYKNLDDTLL-CGDMSESDVIVCFELP 678



 Score =  158 bits (400), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 70/176 (39%), Positives = 112/176 (63%), Gaps = 19/176 (10%)

Query: 671  VTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLK 730
             + + R + +SL  CL+ F +EE L  +D+WYCP+CK+ +QA+KK DLW+ P++LV+HLK
Sbjct: 926  ASAEKRDKGISLQDCLDEFTKEERLGEDDLWYCPRCKKHQQATKKFDLWKAPDILVVHLK 985

Query: 731  RFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQL-------------------YE 771
            RFS SR+++ K++ F++FPI   +L++ V  +  +++ L                   Y+
Sbjct: 986  RFSNSRALRDKIDAFIDFPIEGLDLSEMVGERAVAKKLLAAGNGVDELGLGSLDEPLVYD 1045

Query: 772  LYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            L+A+  H GG+G GHY A+       +WY+FDDS++SP +  D  +A AY+LFYRR
Sbjct: 1046 LFAVDEHMGGLGGGHYRAYASNHLTGKWYHFDDSYVSPASAIDAVNANAYLLFYRR 1101


>gi|326928027|ref|XP_003210186.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19-like [Meleagris
           gallopavo]
          Length = 1426

 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 118/293 (40%), Positives = 157/293 (53%), Gaps = 59/293 (20%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLGM------------ 320
           G TGL+NLGNTCFMNS IQ L +T E   YF +  +  EIN+ NPLG             
Sbjct: 583 GFTGLVNLGNTCFMNSVIQSLSNTRELRDYFHDRSFESEINYNNPLGTGGRLAIGFAMLL 642

Query: 321 -----------------------------------VELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 643 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 702

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC+KVS+TFDPF+YL +
Sbjct: 703 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCSKVSITFDPFLYLPV 762

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSL--KQSEELKVA 463
           PL     + +TV  F  +    P  + V++ K       ++VL ++      + + L++A
Sbjct: 763 PL-PQKQKVLTVYYFAKEPHKKPIKFLVSISKEN--SSAMEVLDSVAHSVHVKPDNLRLA 819

Query: 464 EIQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           E+  +  QR FL  P  SL T+   D L  + V  P+L K + V LQ+  R Q
Sbjct: 820 EVIKNRFQRMFL--PSQSLDTVSPTDLLLCFEVLSPELAKERVVELQVQQRPQ 870



 Score =  152 bits (383), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 85/224 (37%), Positives = 131/224 (58%), Gaps = 13/224 (5%)

Query: 614  VDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTK 673
            +D +N  + L  +GD  + +    +  +V+ +   + L+++     + L  V      ++
Sbjct: 1099 IDAANKEYKLEDKGDTPLELTDDCSLALVWKN--NERLKEFVLVESKELECVEDPSSASE 1156

Query: 674  KARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFS 733
             AR    +L  CL  F + E L PE+ WYCP+CK+ R+ASK+L LWRLP VL+I LKRFS
Sbjct: 1157 AARAGHFTLEQCLNLFTKPEVLAPEEAWYCPKCKQHREASKQLMLWRLPNVLIIQLKRFS 1216

Query: 734  YSRSM--KHKLETFVNFPIHDFNLTKY-VANKNSSRRQLYELYALTNHYGGMGSGHYTAH 790
            + RS   + K+   V+FP+   +L+K+ +  K   +  +Y+LYA+ NHYGGM  GHYTA+
Sbjct: 1217 F-RSFIWRDKINDMVDFPVRSLDLSKFCIGRKGEQQLPMYDLYAVINHYGGMIGGHYTAY 1275

Query: 791  IKLL-DENR------WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             +L  D+N       W  FDDS ++ ++E  V +  AYVLFYRR
Sbjct: 1276 ARLPSDKNSQRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRR 1319


>gi|157820169|ref|NP_001100502.1| ubiquitin carboxyl-terminal hydrolase 32 [Rattus norvegicus]
 gi|149053721|gb|EDM05538.1| ubiquitin specific protease 32 (predicted) [Rattus norvegicus]
          Length = 1431

 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 164/561 (29%), Positives = 239/561 (42%), Gaps = 151/561 (26%)

Query: 18  GDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAED-----PGAGPEIVDTLLEGRDYI 72
           G   ++L H N       ++P  IDN  LV     +       G   +    L+ GRDY 
Sbjct: 334 GANGNILLHLNP------QKPGAIDNQPLVTQEPVKATSLTLEGGRLKRTPQLIHGRDYE 387

Query: 73  LLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELA-VEVYP---LRLQLLVMPRGECSTI 128
           ++P+ VW  L+ WYG    L R VI +  S+T++  +E++P   L L+     R + S I
Sbjct: 388 MVPEPVWRALYHWYGSNLALPRPVIKN--SKTDIPELELFPRYLLFLRQQPATRTQQSNI 445

Query: 129 RI----------------------SKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHA 166
            +                      S+ +TI E+H        +  E + +W Y       
Sbjct: 446 WVNMGNVPSPNAPLKRVLAYTGCFSRMQTIKEIHEYLSQRLRIKEEDMRLWLYNSENYLT 505

Query: 167 LMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLS 226
           L++             D+D  +E L           IQD          +++E     +S
Sbjct: 506 LLD-------------DEDHRLEYL----------KIQDE-------QHLVIEVRNKDMS 535

Query: 227 IAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCF 286
                S    +S+    ++ T                          G TGL NLGNTCF
Sbjct: 536 WPEEMSFIANSSKIDRHKVPTEK------------------------GATGLSNLGNTCF 571

Query: 287 MNSAIQCLVHTPEFARYF---REDYRREINWQNPLGMV---------------------- 321
           MNS+IQC+ +T    +YF   R  Y  E+N  NP+GM                       
Sbjct: 572 MNSSIQCVSNTQPLTQYFISGRHLY--ELNRTNPIGMKGHMAKCYGDLVQELWSGTQKNV 629

Query: 322 -------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEE 356
                                    ELLAFLLDGLHEDLNRV  KPY++ KD+DGRPD E
Sbjct: 630 APLKLRWTIAKYAPRFNGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVELKDSDGRPDWE 689

Query: 357 VADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMT 416
           VA E W NH+ RN SI+VD+  GQ +S + C  C  +SV FDPF +LSLPL   +   + 
Sbjct: 690 VAAEAWDNHLRRNRSIVVDLFHGQLRSQVKCKTCGHISVRFDPFNFLSLPLPMDSYMHLE 749

Query: 417 VTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF-LD 475
           +TV   DG+  P  Y + +    +   L + L ++C LK SE++  AE+ + +I+ F  D
Sbjct: 750 ITVIKLDGTT-PIRYGLRLNMDEKYTGLKKQLSDLCGLK-SEQILFAEVHSSNIKNFPQD 807

Query: 476 DPLISLSTIKDDDHLAAYRVP 496
           +  + LS       L A+ +P
Sbjct: 808 NQKVRLSV---SGFLCAFEIP 825



 Score = 90.1 bits (222), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 74/126 (58%), Gaps = 2/126 (1%)

Query: 641  VVYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPED 699
             + VDW    L  +Y T   E ++E  ++   +++A+ EP++L +CL AF  EE L   +
Sbjct: 1021 CIAVDWDPTALHLRYQTS-QERVVEEHESVEQSRRAQAEPINLDSCLRAFTSEEELGENE 1079

Query: 700  MWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYV 759
            M+YC +CK    A+KKLDLWRLP +L+IHLKRF +      K +  V FP   F+ + ++
Sbjct: 1080 MYYCSKCKTHCLATKKLDLWRLPPILIIHLKRFQFVNGRWIKSQKIVKFPRESFDPSAFL 1139

Query: 760  ANKNSS 765
              ++ +
Sbjct: 1140 VPRDPT 1145



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 43/67 (64%), Gaps = 3/67 (4%)

Query: 762  KNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDEN-RWYNFDDSHISPINEDDVKSAAA 820
            +++  + +Y LYA++ H G +G GHY  + K  + N +WY ++DS    ++ D++ + +A
Sbjct: 1329 EDTHSKPIYNLYAISCHSGILGGGHYVTYAK--NPNCKWYCYNDSSCKELHPDEIDTDSA 1386

Query: 821  YVLFYRR 827
            Y+LFY +
Sbjct: 1387 YILFYEQ 1393


>gi|291405658|ref|XP_002719128.1| PREDICTED: ubiquitin specific protease 32 [Oryctolagus cuniculus]
          Length = 1607

 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 163/561 (29%), Positives = 239/561 (42%), Gaps = 151/561 (26%)

Query: 18   GDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAED-----PGAGPEIVDTLLEGRDYI 72
            G   ++L H N       ++P  IDN  LV     +       G   +    L+ GRDY 
Sbjct: 510  GANGNILLHLNP------QKPGAIDNQPLVTQEPVKATSLTLEGGRLKRTPQLIHGRDYE 563

Query: 73   LLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELA-VEVYP---LRLQLLVMPRGECSTI 128
            ++P+ VW  L+ WYG    L R VI +  S+T++  +E++P   L L+     R + S I
Sbjct: 564  MVPEPVWRALYHWYGANLALPRPVIKN--SKTDIPELELFPRYLLFLRQQPATRTQQSNI 621

Query: 129  RI----------------------SKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHA 166
             +                      S+ +TI E+H        +  E + +W Y       
Sbjct: 622  WVNMGNVPSPNAPLKRVLAYTGCFSRMQTIKEIHEYLSQRLRIKEEDMRLWLYNSENYLT 681

Query: 167  LMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLS 226
            L++             D+D  +E L           IQD          +++E     +S
Sbjct: 682  LLD-------------DEDHRLEYL----------KIQDE-------QHLVIEVRNKDMS 711

Query: 227  IAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCF 286
                 S    +S+    ++ T                          G TGL NLGNTCF
Sbjct: 712  WPEEMSFIANSSKIDRHKVPTEK------------------------GATGLSNLGNTCF 747

Query: 287  MNSAIQCLVHTPEFARYF---REDYRREINWQNPLGMV---------------------- 321
            MNS+IQC+ +T    +YF   R  Y  E+N  NP+GM                       
Sbjct: 748  MNSSIQCVSNTQPLTQYFISGRHLY--ELNRTNPIGMKGHMAKCYGDLVQELWSGTQKNV 805

Query: 322  -------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEE 356
                                     ELLAFLLDGLHEDLNRV  KPY++ KD+DGRPD E
Sbjct: 806  APLKLRWTIAKYAPRFNGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVELKDSDGRPDWE 865

Query: 357  VADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMT 416
            VA E W NH+ RN SI+VD+  GQ +S + C  C  +SV FDPF +LSLPL   +   + 
Sbjct: 866  VAAEAWDNHLRRNRSIVVDLFHGQLRSQVKCKTCGHISVRFDPFNFLSLPLPMDSYMHLE 925

Query: 417  VTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF-LD 475
            +TV   DG+  P  Y + +    +   L + L ++C LK  E++ +AE+ + +I+ F  D
Sbjct: 926  ITVIKLDGTT-PVRYGLRLNMDEKYTGLKKQLSDLCGLK-PEQILLAEVHSSNIKNFPQD 983

Query: 476  DPLISLSTIKDDDHLAAYRVP 496
            +  + LS       L A+ +P
Sbjct: 984  NQKVRLSV---SGFLCAFEIP 1001



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 74/125 (59%), Gaps = 2/125 (1%)

Query: 642  VYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
            + VDW    L  +Y T   E +++  ++   +++A+ EP++L +CL AF  EE L   +M
Sbjct: 1198 IAVDWDPTALHLRYQTS-QERVVDEHESVEQSRQAQAEPINLDSCLRAFTSEEELGENEM 1256

Query: 701  WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
            +YC +CK    A+KKLDLWRLP +L+IHLKRF +      K +  V FP   F+ + ++ 
Sbjct: 1257 YYCSKCKTHCLATKKLDLWRLPPILIIHLKRFQFVNGRWIKSQKIVKFPRESFDPSAFLV 1316

Query: 761  NKNSS 765
             ++ +
Sbjct: 1317 PRDPA 1321



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 40/62 (64%), Gaps = 3/62 (4%)

Query: 767  RQLYELYALTNHYGGMGSGHYTAHIKLLDEN-RWYNFDDSHISPINEDDVKSAAAYVLFY 825
            + +Y LYA++ H G +G GHY  + K  + N +WY ++DS    ++ D++ + +AY+LFY
Sbjct: 1510 KPIYNLYAISCHSGILGGGHYVTYAK--NPNCKWYCYNDSSCKELHPDEIDTDSAYILFY 1567

Query: 826  RR 827
             +
Sbjct: 1568 EQ 1569


>gi|355568599|gb|EHH24880.1| hypothetical protein EGK_08611 [Macaca mulatta]
 gi|380817282|gb|AFE80515.1| ubiquitin carboxyl-terminal hydrolase 32 [Macaca mulatta]
 gi|383408239|gb|AFH27333.1| ubiquitin carboxyl-terminal hydrolase 32 [Macaca mulatta]
          Length = 1604

 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 163/561 (29%), Positives = 238/561 (42%), Gaps = 151/561 (26%)

Query: 18  GDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAED-----PGAGPEIVDTLLEGRDYI 72
           G   ++L H N       ++P  IDN  LV     +       G   +    L+ GRDY 
Sbjct: 507 GANGNILLHLNP------QKPGAIDNQPLVTQEPVKATSLTLEGGRLKQTPQLIHGRDYE 560

Query: 73  LLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELA-VEVYP---LRLQLLVMPRGECSTI 128
           ++P+ VW  L+ WYG    L R VI +  S+T++  +E++P   L L+     R + S I
Sbjct: 561 MVPEPVWRALYHWYGANLALPRPVIKN--SKTDIPELELFPRYLLFLRQQPATRTQQSNI 618

Query: 129 RI----------------------SKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHA 166
            +                      S+ +TI E+H        +  E + +W Y       
Sbjct: 619 WVNMGNVPSPNAPLKRVLAYTGCFSRMQTIKEIHEYLSQRLRIKEEDMRLWLYNSENYLT 678

Query: 167 LMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLS 226
           L++             D+D  +E L           IQD          +++E     +S
Sbjct: 679 LLD-------------DEDHRLEYL----------KIQDE-------QHLVIEVRNKDMS 708

Query: 227 IAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCF 286
                S    +S+    ++ T                          G TGL NLGNTCF
Sbjct: 709 WPEEMSFIANSSKIDRHKVPTEK------------------------GATGLSNLGNTCF 744

Query: 287 MNSAIQCLVHTPEFARYF---REDYRREINWQNPLGMV---------------------- 321
           MNS+IQC+ +T    +YF   R  Y  E+N  NP+GM                       
Sbjct: 745 MNSSIQCVSNTQPLTQYFISGRHLY--ELNRTNPIGMKGHMAKCYGDLVQELWSGTQKNV 802

Query: 322 -------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEE 356
                                    ELLAFLLDGLHEDLNRV  KPY++ KD+DGRPD E
Sbjct: 803 APLKLRWTIAKYAPRFNGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVELKDSDGRPDWE 862

Query: 357 VADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMT 416
           VA E W NH+ RN SI+VD+  GQ +S + C  C  +SV FDPF +LSLPL   +   + 
Sbjct: 863 VAAEAWDNHLRRNRSIVVDLFHGQLRSQVKCKTCGHISVRFDPFNFLSLPLPMDSYMHLE 922

Query: 417 VTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF-LD 475
           +TV   DG+  P  Y + +    +   L + L ++C L  SE++ +AE+   +I+ F  D
Sbjct: 923 ITVIKLDGTT-PVRYGLRLNMDEKYTGLKKQLSDLCGL-NSEQILLAEVHGSNIKNFPQD 980

Query: 476 DPLISLSTIKDDDHLAAYRVP 496
           +  + LS       L A+ +P
Sbjct: 981 NQKVRLSV---SGFLCAFEIP 998



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 74/125 (59%), Gaps = 2/125 (1%)

Query: 642  VYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
            + VDW    L  +Y T   E +++  ++   +++A+ EP++L +CL AF  EE L   +M
Sbjct: 1195 IAVDWDPTALHLRYQTS-QERVVDEHESVEQSRRAQAEPINLDSCLRAFTSEEELGENEM 1253

Query: 701  WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
            +YC +CK    A+KKLDLWRLP +L+IHLKRF +      K +  V FP   F+ + ++ 
Sbjct: 1254 YYCSKCKTHCLATKKLDLWRLPPILIIHLKRFQFVNGRWIKSQKIVKFPRESFDPSAFLV 1313

Query: 761  NKNSS 765
             ++ +
Sbjct: 1314 PRDPA 1318



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 40/62 (64%), Gaps = 3/62 (4%)

Query: 767  RQLYELYALTNHYGGMGSGHYTAHIKLLDEN-RWYNFDDSHISPINEDDVKSAAAYVLFY 825
            + +Y LYA++ H G +G GHY  + K  + N +WY ++DS    ++ D++ + +AY+LFY
Sbjct: 1507 KPIYNLYAISCHSGILGGGHYVTYAK--NPNCKWYCYNDSSCKELHPDEIDTDSAYILFY 1564

Query: 826  RR 827
             +
Sbjct: 1565 EQ 1566


>gi|22550104|ref|NP_115971.2| ubiquitin carboxyl-terminal hydrolase 32 [Homo sapiens]
 gi|47606649|sp|Q8NFA0.1|UBP32_HUMAN RecName: Full=Ubiquitin carboxyl-terminal hydrolase 32; AltName:
           Full=Deubiquitinating enzyme 32; AltName: Full=Renal
           carcinoma antigen NY-REN-60; AltName: Full=Ubiquitin
           thioesterase 32; AltName:
           Full=Ubiquitin-specific-processing protease 32; Flags:
           Precursor
 gi|22532405|gb|AAM97922.1| ubiquitin-specific protease USP32 [Homo sapiens]
 gi|162317642|gb|AAI56265.1| Ubiquitin specific peptidase 32 [synthetic construct]
          Length = 1604

 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 163/561 (29%), Positives = 238/561 (42%), Gaps = 151/561 (26%)

Query: 18  GDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAED-----PGAGPEIVDTLLEGRDYI 72
           G   ++L H N       ++P  IDN  LV     +       G   +    L+ GRDY 
Sbjct: 507 GANGNILLHLNP------QKPGAIDNQPLVTQEPVKATSLTLEGGRLKRTPQLIHGRDYE 560

Query: 73  LLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELA-VEVYP---LRLQLLVMPRGECSTI 128
           ++P+ VW  L+ WYG    L R VI +  S+T++  +E++P   L L+     R + S I
Sbjct: 561 MVPEPVWRALYHWYGANLALPRPVIKN--SKTDIPELELFPRYLLFLRQQPATRTQQSNI 618

Query: 129 RI----------------------SKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHA 166
            +                      S+ +TI E+H        +  E + +W Y       
Sbjct: 619 WVNMGNVPSPNAPLKRVLAYTGCFSRMQTIKEIHEYLSQRLRIKEEDMRLWLYNSENYLT 678

Query: 167 LMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLS 226
           L++             D+D  +E L           IQD          +++E     +S
Sbjct: 679 LLD-------------DEDHKLEYL----------KIQDE-------QHLVIEVRNKDMS 708

Query: 227 IAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCF 286
                S    +S+    ++ T                          G TGL NLGNTCF
Sbjct: 709 WPEEMSFIANSSKIDRHKVPTEK------------------------GATGLSNLGNTCF 744

Query: 287 MNSAIQCLVHTPEFARYF---REDYRREINWQNPLGMV---------------------- 321
           MNS+IQC+ +T    +YF   R  Y  E+N  NP+GM                       
Sbjct: 745 MNSSIQCVSNTQPLTQYFISGRHLY--ELNRTNPIGMKGHMAKCYGDLVQELWSGTQKNV 802

Query: 322 -------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEE 356
                                    ELLAFLLDGLHEDLNRV  KPY++ KD+DGRPD E
Sbjct: 803 APLKLRWTIAKYAPRFNGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVELKDSDGRPDWE 862

Query: 357 VADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMT 416
           VA E W NH+ RN SI+VD+  GQ +S + C  C  +SV FDPF +LSLPL   +   + 
Sbjct: 863 VAAEAWDNHLRRNRSIVVDLFHGQLRSQVKCKTCGHISVRFDPFNFLSLPLPMDSYMHLE 922

Query: 417 VTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF-LD 475
           +TV   DG+  P  Y + +    +   L + L ++C L  SE++ +AE+   +I+ F  D
Sbjct: 923 ITVIKLDGTT-PVRYGLRLNMDEKYTGLKKQLSDLCGL-NSEQILLAEVHGSNIKNFPQD 980

Query: 476 DPLISLSTIKDDDHLAAYRVP 496
           +  + LS       L A+ +P
Sbjct: 981 NQKVRLSV---SGFLCAFEIP 998



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 74/125 (59%), Gaps = 2/125 (1%)

Query: 642  VYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
            + VDW    L  +Y T   E +++  ++   +++A+ EP++L +CL AF  EE L   +M
Sbjct: 1195 IAVDWDPTALHLRYQTS-QERVVDEHESVEQSRRAQAEPINLDSCLRAFTSEEELGENEM 1253

Query: 701  WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
            +YC +CK    A+KKLDLWRLP +L+IHLKRF +      K +  V FP   F+ + ++ 
Sbjct: 1254 YYCSKCKTHCLATKKLDLWRLPPILIIHLKRFQFVNGRWIKSQKIVKFPRESFDPSAFLV 1313

Query: 761  NKNSS 765
             ++ +
Sbjct: 1314 PRDPA 1318



 Score = 51.2 bits (121), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 40/62 (64%), Gaps = 3/62 (4%)

Query: 767  RQLYELYALTNHYGGMGSGHYTAHIKLLDEN-RWYNFDDSHISPINEDDVKSAAAYVLFY 825
            + +Y LYA++ H G +G GHY  + K  + N +WY ++DS    ++ D++ + +AY+LFY
Sbjct: 1507 KPIYNLYAISCHSGILGGGHYVTYAK--NPNCKWYCYNDSSCKELHPDEIDTDSAYILFY 1564

Query: 826  RR 827
             +
Sbjct: 1565 EQ 1566


>gi|196009203|ref|XP_002114467.1| hypothetical protein TRIADDRAFT_58322 [Trichoplax adhaerens]
 gi|190583486|gb|EDV23557.1| hypothetical protein TRIADDRAFT_58322 [Trichoplax adhaerens]
          Length = 1517

 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 167/599 (27%), Positives = 247/599 (41%), Gaps = 179/599 (29%)

Query: 1   WWQHWIDYVN-QDQPNNTGDGSSL---LEHFNSAGSSASKRPSG---------------- 40
           WW++W++YV    Q N+T   SS    +   N  G+ A+ RP                  
Sbjct: 406 WWRNWLEYVGASKQSNHTKALSSSKLSMPPLNRNGNPANNRPLSKSHSSQTFNQRPVNLN 465

Query: 41  --------IDNSDLVNDATAEDP-----GAGPEIVDTLLEGRDYILLPQEVWNQLHSWYG 87
                   IDN  LV       P     G   +    L+  RDY LLP+ V+  L  WYG
Sbjct: 466 GILPAPGLIDNLCLVESPNRRIPTLTNEGGRLKKNVNLIPRRDYQLLPEAVFKALCQWYG 525

Query: 88  GGPTLARKVISSGLSQTELAVEVYPLRLQLL----------------------------- 118
              +L R V ++   + EL  E+YP+ +++L                             
Sbjct: 526 CNLSLPRHVTTNKDGKAEL--ELYPICVKILRHTSPNRNSNSSSLWSTVTGFSGITFGGF 583

Query: 119 ------------VMPRGECS-TIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKH 165
                        +PR   + T   S+K T+ ++     +   + +E + +W+Y      
Sbjct: 584 GGFGVASVNTNESIPRKYLAYTACYSRKNTLKQVLEFLGARLRMKVEDLRLWNYSNEDYP 643

Query: 166 ALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSL 225
            L+ D   T+++  ++  Q +L+EV  N++ T  +   Q     ++K   ++ +  K   
Sbjct: 644 QLLEDEQATIEELKLEDGQQVLIEV-RNIDMTWPEEMYQLAKRGKEKDMRIVAKTEK--- 699

Query: 226 SIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTC 285
                                                  GVT         GL N+GNTC
Sbjct: 700 ---------------------------------------GVT---------GLSNMGNTC 711

Query: 286 FMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV----------------------- 321
           FMNSA+QC+ +T    +YF ++ +  EIN  NPLGM                        
Sbjct: 712 FMNSALQCVSNTQALTKYFVKQAHLHEINRVNPLGMKGIIAKRYGELIQELWSGNTRSFV 771

Query: 322 ------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEV 357
                                   ELL+FLLDGLHEDLNRV  KPY++ KD+DGR DEEV
Sbjct: 772 PLKMRLTICKYAPRFNGFQQQDSQELLSFLLDGLHEDLNRVHDKPYVELKDSDGRSDEEV 831

Query: 358 ADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTV 417
           A E W NHI RN SI+VD+  GQ +S + C  C+  SVTFDPF +LSLPL    +  + V
Sbjct: 832 ALEAWENHIKRNKSIVVDLFHGQLRSAVACKTCDHASVTFDPFTFLSLPLPMDNSIFIEV 891

Query: 418 TVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDD 476
           TV   DGS   + Y + +   GR  D+   L +   L+ S+ L V E+    ++ F+ D
Sbjct: 892 TVVNMDGST-HTKYGLCLNSEGRYYDVKVALMDYTQLEPSQMLLV-ELFGAQVKNFVLD 948



 Score = 85.9 bits (211), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 62/100 (62%)

Query: 671  VTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLK 730
            ++++  ++P+ L  CL AF  EE L  ++ WYC +CK+ R A+KKL++W+LP +L++H+K
Sbjct: 1196 ISRQQLSQPIDLDKCLRAFTSEEELGEDESWYCSKCKQHRVATKKLEIWKLPPILIVHMK 1255

Query: 731  RFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLY 770
            RF +      K +  V FP+ + +  KYV   + S +  +
Sbjct: 1256 RFQFVAGRWIKSQKNVKFPLMNMDPYKYVVGHDDSYKATF 1295



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 1/62 (1%)

Query: 766  RRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
            +R LY LYA+ +H G +G GHY +  K  + N+WY F+DS       + V   + Y+LFY
Sbjct: 1419 KRPLYNLYAIASHSGILGGGHYVSFAKNPN-NKWYIFNDSSCKETTPERVSEESPYLLFY 1477

Query: 826  RR 827
             R
Sbjct: 1478 ER 1479


>gi|387539806|gb|AFJ70530.1| ubiquitin carboxyl-terminal hydrolase 32 [Macaca mulatta]
          Length = 1604

 Score =  190 bits (482), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 163/561 (29%), Positives = 238/561 (42%), Gaps = 151/561 (26%)

Query: 18  GDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAED-----PGAGPEIVDTLLEGRDYI 72
           G   ++L H N       ++P  IDN  LV     +       G   +    L+ GRDY 
Sbjct: 507 GANGNILLHLNP------QKPGAIDNQPLVTQEPVKATSLTLEGGRLKQTPQLIHGRDYE 560

Query: 73  LLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELA-VEVYP---LRLQLLVMPRGECSTI 128
           ++P+ VW  L+ WYG    L R VI +  S+T++  +E++P   L L+     R + S I
Sbjct: 561 MVPEPVWRALYHWYGANLALPRPVIKN--SKTDIPELELFPRYLLFLRQQPATRTQQSNI 618

Query: 129 RI----------------------SKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHA 166
            +                      S+ +TI E+H        +  E + +W Y       
Sbjct: 619 WVNMGNVPSPNAPLKRVLAYTGCFSRMQTIKEIHEYLSQRLRIKEEDMRLWLYNSENYLT 678

Query: 167 LMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLS 226
           L++             D+D  +E L           IQD          +++E     +S
Sbjct: 679 LLD-------------DEDHRLEYL----------KIQDE-------QHLVIEVRNKDMS 708

Query: 227 IAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCF 286
                S    +S+    ++ T                          G TGL NLGNTCF
Sbjct: 709 WPEEMSFIANSSKIDRHKVPTEK------------------------GATGLSNLGNTCF 744

Query: 287 MNSAIQCLVHTPEFARYF---REDYRREINWQNPLGMV---------------------- 321
           MNS+IQC+ +T    +YF   R  Y  E+N  NP+GM                       
Sbjct: 745 MNSSIQCVSNTQPLTQYFISGRHLY--ELNRTNPIGMKGHMAKCYGDLVQELWSGTQKNV 802

Query: 322 -------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEE 356
                                    ELLAFLLDGLHEDLNRV  KPY++ KD+DGRPD E
Sbjct: 803 APLKLRWTIAKYAPRFNGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVELKDSDGRPDWE 862

Query: 357 VADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMT 416
           VA E W NH+ RN SI+VD+  GQ +S + C  C  +SV FDPF +LSLPL   +   + 
Sbjct: 863 VAAEAWDNHLRRNRSIVVDLFHGQLRSQVKCKTCGHISVRFDPFNFLSLPLPMDSYMHLE 922

Query: 417 VTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF-LD 475
           +TV   DG+  P  Y + +    +   L + L ++C L  SE++ +AE+   +I+ F  D
Sbjct: 923 ITVIKLDGTT-PVRYGLRLNMDEKYTGLKKQLSDLCGL-NSEQILLAEVHGSNIKNFPQD 980

Query: 476 DPLISLSTIKDDDHLAAYRVP 496
           +  + LS       L A+ +P
Sbjct: 981 NQKVRLSV---SGFLCAFEIP 998



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 74/125 (59%), Gaps = 2/125 (1%)

Query: 642  VYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
            + VDW    L  +Y T   E +++  ++   +++A+ EP++L +CL AF  EE L   +M
Sbjct: 1195 IAVDWDPTALHLRYQTS-QERVVDEHESVEQSRRAQAEPINLDSCLRAFTSEEELGENEM 1253

Query: 701  WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
            +YC +CK    A+KKLDLWRLP +L+IHLKRF +      K +  V FP   F+ + ++ 
Sbjct: 1254 YYCSKCKTHCLATKKLDLWRLPPILIIHLKRFQFVNGRWIKSQKIVKFPRESFDPSAFLV 1313

Query: 761  NKNSS 765
             ++ +
Sbjct: 1314 PRDPA 1318



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 40/62 (64%), Gaps = 3/62 (4%)

Query: 767  RQLYELYALTNHYGGMGSGHYTAHIKLLDEN-RWYNFDDSHISPINEDDVKSAAAYVLFY 825
            + +Y LYA++ H G +G GHY  + K  + N +WY ++DS    ++ D++ + +AY+LFY
Sbjct: 1507 KPIYNLYAISCHSGILGGGHYVTYAK--NPNCKWYCYNDSSCKELHPDEIDTDSAYILFY 1564

Query: 826  RR 827
             +
Sbjct: 1565 EQ 1566


>gi|114669727|ref|XP_001142267.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 32 isoform 2 [Pan
           troglodytes]
 gi|410262322|gb|JAA19127.1| ubiquitin specific peptidase 32 [Pan troglodytes]
 gi|410262324|gb|JAA19128.1| ubiquitin specific peptidase 32 [Pan troglodytes]
 gi|410294718|gb|JAA25959.1| ubiquitin specific peptidase 32 [Pan troglodytes]
 gi|410294720|gb|JAA25960.1| ubiquitin specific peptidase 32 [Pan troglodytes]
 gi|410294722|gb|JAA25961.1| ubiquitin specific peptidase 32 [Pan troglodytes]
 gi|410342839|gb|JAA40366.1| ubiquitin specific peptidase 32 [Pan troglodytes]
 gi|410342841|gb|JAA40367.1| ubiquitin specific peptidase 32 [Pan troglodytes]
 gi|410342843|gb|JAA40368.1| ubiquitin specific peptidase 32 [Pan troglodytes]
 gi|410342845|gb|JAA40369.1| ubiquitin specific peptidase 32 [Pan troglodytes]
          Length = 1604

 Score =  190 bits (482), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 163/561 (29%), Positives = 238/561 (42%), Gaps = 151/561 (26%)

Query: 18  GDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAED-----PGAGPEIVDTLLEGRDYI 72
           G   ++L H N       ++P  IDN  LV     +       G   +    L+ GRDY 
Sbjct: 507 GANGNILLHLNP------QKPGAIDNQPLVTQEPVKATSLTLEGGRLKRAPQLIHGRDYE 560

Query: 73  LLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELA-VEVYP---LRLQLLVMPRGECSTI 128
           ++P+ VW  L+ WYG    L R VI +  S+T++  +E++P   L L+     R + S I
Sbjct: 561 MVPEPVWRALYHWYGANLALPRPVIKN--SKTDIPELELFPRYLLFLRQQPATRTQQSNI 618

Query: 129 RI----------------------SKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHA 166
            +                      S+ +TI E+H        +  E + +W Y       
Sbjct: 619 WVNMGNVPSPNAPLKRVLAYTGCFSRMQTIKEIHEYLSQRLRIKEEDMRLWLYNSENYLT 678

Query: 167 LMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLS 226
           L++             D+D  +E L           IQD          +++E     +S
Sbjct: 679 LLD-------------DEDHKLEYL----------KIQDE-------QHLVIEVRNKDMS 708

Query: 227 IAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCF 286
                S    +S+    ++ T                          G TGL NLGNTCF
Sbjct: 709 WPEEMSFIANSSKIDRHKVPTEK------------------------GATGLSNLGNTCF 744

Query: 287 MNSAIQCLVHTPEFARYF---REDYRREINWQNPLGMV---------------------- 321
           MNS+IQC+ +T    +YF   R  Y  E+N  NP+GM                       
Sbjct: 745 MNSSIQCVSNTQPLTQYFISGRHLY--ELNRTNPIGMKGHMAKCYGDLVQELWSGTQKNV 802

Query: 322 -------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEE 356
                                    ELLAFLLDGLHEDLNRV  KPY++ KD+DGRPD E
Sbjct: 803 APLKLRWTIAKYAPRFNGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVELKDSDGRPDWE 862

Query: 357 VADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMT 416
           VA E W NH+ RN SI+VD+  GQ +S + C  C  +SV FDPF +LSLPL   +   + 
Sbjct: 863 VAAEAWDNHLRRNRSIVVDLFHGQLRSQVKCKTCGHISVRFDPFNFLSLPLPMDSYMHLE 922

Query: 417 VTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF-LD 475
           +TV   DG+  P  Y + +    +   L + L ++C L  SE++ +AE+   +I+ F  D
Sbjct: 923 ITVIKLDGTT-PVRYGLRLNMDEKYTGLKKQLSDLCGL-NSEQILLAEVHGSNIKNFPQD 980

Query: 476 DPLISLSTIKDDDHLAAYRVP 496
           +  + LS       L A+ +P
Sbjct: 981 NQKVRLSV---SGFLCAFEIP 998



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 74/125 (59%), Gaps = 2/125 (1%)

Query: 642  VYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
            + VDW    L  +Y T   E +++  ++   +++A+ EP++L +CL AF  EE L   +M
Sbjct: 1195 IAVDWDPTALHLRYQTS-QERVVDEHESVEQSRRAQAEPINLDSCLRAFTSEEELGENEM 1253

Query: 701  WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
            +YC +CK    A+KKLDLWRLP +L+IHLKRF +      K +  V FP   F+ + ++ 
Sbjct: 1254 YYCSKCKTHCLATKKLDLWRLPPILIIHLKRFQFVNGRWIKSQKIVKFPRESFDPSAFLV 1313

Query: 761  NKNSS 765
             ++ +
Sbjct: 1314 PRDPA 1318



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 40/62 (64%), Gaps = 3/62 (4%)

Query: 767  RQLYELYALTNHYGGMGSGHYTAHIKLLDEN-RWYNFDDSHISPINEDDVKSAAAYVLFY 825
            + +Y LYA++ H G +G GHY  + K  + N +WY ++DS    ++ D++ + +AY+LFY
Sbjct: 1507 KPIYNLYAISCHSGILGGGHYVTYAK--NPNCKWYCYNDSSCKELHPDEIDTDSAYILFY 1564

Query: 826  RR 827
             +
Sbjct: 1565 EQ 1566


>gi|417406639|gb|JAA49969.1| Putative ubiquitin carboxyl-terminal hydrolase 32 [Desmodus rotundus]
          Length = 1619

 Score =  189 bits (481), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 159/559 (28%), Positives = 238/559 (42%), Gaps = 159/559 (28%)

Query: 34   ASKRPSGIDNSDLVNDATAED-----PGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGG 88
            + ++P  IDN  LV     +       G   +    L+ GRDY ++P+ VW  L+ WYG 
Sbjct: 518  SPQKPGAIDNQPLVTQEPVKATSLTLEGGRLKRTPQLIHGRDYEMVPEPVWRALYHWYGA 577

Query: 89   GPTLARKVISSGLSQTELA-VEVYP---------------------------LRLQLLVM 120
               L R VI +  S+TE+  +E++P                           LR+    +
Sbjct: 578  NLALPRPVIKN--SKTEIPELELFPRYLLFLRQQPATRTQQSNIWVNMGMMSLRMFPQHL 635

Query: 121  PRGECS------------TIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALM 168
            PRG               T   S+ +TI E+H        +  E + +W Y       L+
Sbjct: 636  PRGNVPSPNAPLKRVLAYTGCFSRMQTIKEIHEYLSQRLRIKEEDMRLWLYNSENYLTLL 695

Query: 169  NDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIA 228
            +D D  L+   IQ +Q +++EV +           +D  + E+                 
Sbjct: 696  DDEDHRLEYLKIQDEQHLVIEVRN-----------KDMSWPEEM---------------- 728

Query: 229  GGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMN 288
               S    +S+    ++ T              G++G++  G            NTCFMN
Sbjct: 729  ---SFIANSSKIDRHKVPTEK------------GATGLSNLG------------NTCFMN 761

Query: 289  SAIQCLVHTPEFARYF---REDYRREINWQNPLGMV------------------------ 321
            S+IQC+ +T    +YF   R  Y  E+N  NP+GM                         
Sbjct: 762  SSIQCVSNTQALTQYFISGRHLY--ELNRTNPIGMKGHMAKCYGDLVQELWSGTQKNIAP 819

Query: 322  -----------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVA 358
                                   ELLAFLLDGLHEDLNRV  KPY++ KD+DGRPD EVA
Sbjct: 820  LKLRWTIAKYAPRFNGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVELKDSDGRPDWEVA 879

Query: 359  DEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVT 418
             E W NH+ RN SI+VD+  GQ +S + C  C  +SV FDPF +LSLPL   +   + +T
Sbjct: 880  AEAWDNHLRRNRSIVVDLFHGQLRSQVKCKTCGHISVRFDPFNFLSLPLPMDSYMHLEIT 939

Query: 419  VFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF-LDDP 477
            V   DG+  P  Y + +    +   L + L ++C LK SE++ +AE+   +I+ F  D+ 
Sbjct: 940  VIKLDGTT-PVRYGLRLNMDEKYTGLKKQLSDLCGLK-SEQILLAEVHGSNIKNFPQDNQ 997

Query: 478  LISLSTIKDDDHLAAYRVP 496
             + LS       L A+ +P
Sbjct: 998  KVRLSI---SGFLCAFEIP 1013



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 73/123 (59%), Gaps = 2/123 (1%)

Query: 642  VYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
            + VDW    L  +Y T   E +++  ++   +++A+ EP++L +CL AF  EE L   +M
Sbjct: 1210 IAVDWDPTALHLRYQTS-QERVVDEHESVEQSRRAQAEPINLDSCLRAFTSEEELGENEM 1268

Query: 701  WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
            +YC +CK    A+KKLDLWRLP +L+IHLKRF +      K +  V FP   F+ + ++ 
Sbjct: 1269 YYCSKCKTHCLATKKLDLWRLPPILIIHLKRFQFVNGRWIKSQKIVKFPRESFDPSAFLV 1328

Query: 761  NKN 763
             ++
Sbjct: 1329 PRD 1331



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 40/61 (65%), Gaps = 1/61 (1%)

Query: 767  RQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYR 826
            + +Y LYA++ H G +G GHY  + K  + ++WY ++DS    ++ D++ + +AY+LFY 
Sbjct: 1522 KPIYNLYAISCHSGILGGGHYVTYAKNPN-SKWYCYNDSSCKELHPDEIDTDSAYILFYE 1580

Query: 827  R 827
            +
Sbjct: 1581 Q 1581


>gi|402899881|ref|XP_003912913.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 32 [Papio anubis]
          Length = 1604

 Score =  189 bits (481), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 163/561 (29%), Positives = 238/561 (42%), Gaps = 151/561 (26%)

Query: 18  GDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAED-----PGAGPEIVDTLLEGRDYI 72
           G   ++L H N       ++P  IDN  LV     +       G   +    L+ GRDY 
Sbjct: 507 GANGNILLHLNP------QKPGAIDNQPLVTQEPVKATSLTLEGGRLKRTPQLIHGRDYE 560

Query: 73  LLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELA-VEVYP---LRLQLLVMPRGECSTI 128
           ++P+ VW  L+ WYG    L R VI +  S+T++  +E++P   L L+     R + S I
Sbjct: 561 MVPEPVWRALYHWYGANLALPRPVIKN--SKTDIPELELFPRYLLFLRQQPATRTQQSNI 618

Query: 129 RI----------------------SKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHA 166
            +                      S+ +TI E+H        +  E + +W Y       
Sbjct: 619 WVNMGNVPSPNAPLKRVLAYTGCFSRMQTIKEIHEYLSQRLRIKEEDMRLWLYNSENYLT 678

Query: 167 LMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLS 226
           L++             D+D  +E L           IQD          +++E     +S
Sbjct: 679 LLD-------------DEDHRLEYL----------KIQDE-------QHLVIEVRNKDMS 708

Query: 227 IAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCF 286
                S    +S+    ++ T                          G TGL NLGNTCF
Sbjct: 709 WPEEMSFIANSSKIDRHKVPTEK------------------------GATGLSNLGNTCF 744

Query: 287 MNSAIQCLVHTPEFARYF---REDYRREINWQNPLGMV---------------------- 321
           MNS+IQC+ +T    +YF   R  Y  E+N  NP+GM                       
Sbjct: 745 MNSSIQCVSNTQPLTQYFISGRHLY--ELNRTNPIGMKGHMAKCYGDLVQELWSGTQKNV 802

Query: 322 -------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEE 356
                                    ELLAFLLDGLHEDLNRV  KPY++ KD+DGRPD E
Sbjct: 803 APLKLRWTIAKYAPRFNGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVELKDSDGRPDWE 862

Query: 357 VADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMT 416
           VA E W NH+ RN SI+VD+  GQ +S + C  C  +SV FDPF +LSLPL   +   + 
Sbjct: 863 VAAEAWDNHLRRNRSIVVDLFHGQLRSQVKCKTCGHISVRFDPFNFLSLPLPMDSYMHLE 922

Query: 417 VTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF-LD 475
           +TV   DG+  P  Y + +    +   L + L ++C L  SE++ +AE+   +I+ F  D
Sbjct: 923 ITVIKLDGTT-PVRYGLRLNMDEKYTGLKKQLSDLCGL-NSEQILLAEVHGSNIKNFPQD 980

Query: 476 DPLISLSTIKDDDHLAAYRVP 496
           +  + LS       L A+ +P
Sbjct: 981 NQKVRLSV---SGFLCAFEIP 998



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 74/125 (59%), Gaps = 2/125 (1%)

Query: 642  VYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
            + VDW    L  +Y T   E +++  ++   +++A+ EP++L +CL AF  EE L   +M
Sbjct: 1195 IAVDWDPTALHLRYQTS-QERVVDEHESVEQSRRAQAEPINLDSCLRAFTSEEELGENEM 1253

Query: 701  WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
            +YC +CK    A+KKLDLWRLP +L+IHLKRF +      K +  V FP   F+ + ++ 
Sbjct: 1254 YYCSKCKTHCLATKKLDLWRLPPILIIHLKRFQFVNGRWIKSQKIVKFPRESFDPSAFLV 1313

Query: 761  NKNSS 765
             ++ +
Sbjct: 1314 PRDPA 1318



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 40/62 (64%), Gaps = 3/62 (4%)

Query: 767  RQLYELYALTNHYGGMGSGHYTAHIKLLDEN-RWYNFDDSHISPINEDDVKSAAAYVLFY 825
            + +Y LYA++ H G +G GHY  + K  + N +WY ++DS    ++ D++ + +AY+LFY
Sbjct: 1507 KPIYNLYAISCHSGILGGGHYVTYAK--NPNCKWYCYNDSSCKELHPDEIDTDSAYILFY 1564

Query: 826  RR 827
             +
Sbjct: 1565 EQ 1566


>gi|195027778|ref|XP_001986759.1| GH20353 [Drosophila grimshawi]
 gi|193902759|gb|EDW01626.1| GH20353 [Drosophila grimshawi]
          Length = 1273

 Score =  189 bits (481), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 183/692 (26%), Positives = 280/692 (40%), Gaps = 178/692 (25%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARY-----FREDYRR-------------EINWQ 315
           G+ GL N GNTCFMN+ +QCL HT   A Y     ++ D +R             E+  Q
Sbjct: 232 GVMGLKNHGNTCFMNAVLQCLSHTDILAEYFVLDQYKADLKRRNKINSRKFGTKGELTEQ 291

Query: 316 --NPLGMV---------------------------------ELLAFLLDGLHEDLNRVKH 340
             N L  +                                 E L +LLD +HEDLN    
Sbjct: 292 LANVLKALWTCRNESDHSTSFKAVVDRYGTQFRSSTQHDAQEFLFWLLDKVHEDLNTASK 351

Query: 341 KPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPF 400
           + Y   K++ GR DE +A E  ANHI  N+S +  V Q Q++S+L CP C K S TFDPF
Sbjct: 352 RRYKSIKNSYGRSDEIIAAETLANHIRCNNSFVQAVFQAQFRSSLTCPRCQKQSNTFDPF 411

Query: 401 MYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHG---RCRDLIQVLGNICSLKQS 457
             +S+ L   T  T+ VTV             + VP        R+L+Q  G       S
Sbjct: 412 HCISVQLPQLTQLTIFVTVVFMKQQPRQLKMGLRVPAGSPIVALRELLQETG-----IAS 466

Query: 458 EELKVAEIQNHSIQRFLDD--PLISLSTIK------------------DDDHLAAYRVPK 497
             + + ++ +    R   D  P+ +LS+++                  D D + A   P 
Sbjct: 467 NRMVLVDLSSEGFTRVFYDTQPVETLSSVENIYCIEVPEVSPTPKASLDADPVDAAEKPL 526

Query: 498 LVKKA----------VFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKI 547
               A          + +  +HR    E G A+     K +G P      RD   S   +
Sbjct: 527 GAPPATATAHSTDLLLLVANVHRTSAGEQGDAKAVC--KRFGAPFSMKAPRD--CSYQDL 582

Query: 548 QSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLP 607
           Q  + R +S  LK E   +A        +   DPS +                      P
Sbjct: 583 QKRMLREMSSLLKPEVFSYATPLPDMFKIRLQDPSAD----------------------P 620

Query: 608 NLPLQLVDESNVCFDLSVEGDKTIRIPSSS---TSIVVYVDWSQKLLEKYNTHFLE---N 661
           +  L+ V+       L+   D  + + SS    T I + ++WS        THF++   +
Sbjct: 621 DTYLEQVEHPL----LTEMIDMALSVLSSEAGPTHIKLLLEWSSP-----ETHFVKLQSD 671

Query: 662 LLEVFKNGPVTKKARTEP-----LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKL 716
              + ++  V + + ++P     L+L  CLE + + E L  ED W CP C++     K L
Sbjct: 672 ADAIVEHESVARLSASKPNDTAALTLEQCLEHYTKAETLSAEDAWRCPHCQQYLPVVKTL 731

Query: 717 DLWRLPEVLVIHLKRFSYSRS---MKHKLETFVNFPIHDFNLTKYVA------------- 760
            LW LP++LV+H KRF   ++      KL T V FP+  F+++ ++A             
Sbjct: 732 GLWSLPDILVVHFKRFRQHQAKGPQAAKLTTMVKFPLTAFDMSPHLARGVRESCSTLGHA 791

Query: 761 --------------------NKNSSRRQLYELYALTNHYGG-MGSGHYTAHIKLLDENRW 799
                               ++   +   Y+LYA+  H G  + +GHYTA  K   + +W
Sbjct: 792 MDQPATKKSRSGDSRSSTLNSRAEPKDTRYDLYAVCYHQGDTLETGHYTAACKNPYDRQW 851

Query: 800 YNFDDSHISPIN----EDDVKSAAAYVLFYRR 827
           Y FDD  +S +     E D+ +  AY+LFY+R
Sbjct: 852 YKFDDQRVSKVPELDIEQDIINNEAYMLFYQR 883


>gi|334333719|ref|XP_001367829.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19-like
           [Monodelphis domestica]
          Length = 1468

 Score =  189 bits (480), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 117/292 (40%), Positives = 155/292 (53%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLGM------------ 320
           G TGL+NLGNTCFMNS IQ L +T E   YF +  +  EIN+ NPLG             
Sbjct: 671 GFTGLVNLGNTCFMNSVIQSLSNTRELRDYFHDRSFEAEINYSNPLGTGGRLAIGFAVLL 730

Query: 321 -----------------------------------VELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 731 RALWKGTHHAFQPSKLKAIVASKANQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 790

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA E W  H  RNDS IVD+ QGQYKS LVCPVC+K+S+TFDPF+YL +
Sbjct: 791 TVDSDGRPDEVVAQEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCSKLSITFDPFLYLPV 850

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + +TV  F  +    P  + V++ K +    +++  L     +K  E L++AE
Sbjct: 851 PL-PQKQKVLTVYYFAKEPHKKPVKFLVSISKENSSAMEVLDSLAQSVHVK-PESLRLAE 908

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + V  P+L K + V LQ+  R Q
Sbjct: 909 VIKNRFHRVFL--PSHSLDTVSPTDLLLCFEVLSPELAKERVVVLQVQQRPQ 958



 Score =  149 bits (375), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 75/167 (44%), Positives = 106/167 (63%), Gaps = 11/167 (6%)

Query: 671  VTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLK 730
             ++ AR    +L  CL  F + E L PE+ WYCP+CK+ R+ASK+L LWRLP V +I LK
Sbjct: 1230 ASEAARAGHFTLEQCLNLFTKPEVLAPEEAWYCPKCKQHREASKQLMLWRLPNVFIIQLK 1289

Query: 731  RFSYSRSM--KHKLETFVNFPIHDFNLTKY-VANKNSSRRQLYELYALTNHYGGMGSGHY 787
            RFS+ RS   + K+   V FP+ + +L+K+ +  K+  +   Y+LYA+ NHYGGM  GHY
Sbjct: 1290 RFSF-RSFIWRDKINDMVEFPVRNLDLSKFCIGQKDDRQLPTYDLYAVINHYGGMIGGHY 1348

Query: 788  TAHIKLL-DENR------WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            TA+ +L  D+N       W  FDDS ++ ++E  V +  AYVLFYRR
Sbjct: 1349 TAYARLPSDKNSQRSDVGWRLFDDSTVTIVDESQVVTRYAYVLFYRR 1395


>gi|187282394|ref|NP_001119775.1| ubiquitin carboxyl-terminal hydrolase 43 [Rattus norvegicus]
 gi|149052981|gb|EDM04798.1| ubiquitin specific protease 43 (predicted) [Rattus norvegicus]
          Length = 1039

 Score =  189 bits (480), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 159/599 (26%), Positives = 270/599 (45%), Gaps = 106/599 (17%)

Query: 296 HTPEFARYFR---EDYRREINWQNPLGMVELLAFLLDGLHEDLNRVKHKPYIKSKDADGR 352
           +TP+ +  F+     Y  +    +    +E L +LLD +HEDL    H          G+
Sbjct: 53  YTPQLSAEFKNAVSKYGSQFQGNSQHDALEFLLWLLDRVHEDLEGSTH----------GQ 102

Query: 353 PDEEVADEYWANHIARN-----------DSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
             E++  E  A+ I+ +            S +    Q QY+S+L CP C K S TFDPF+
Sbjct: 103 GSEQLPPE--ASKISEDLRSSAAPPSLGPSFVQSHFQAQYRSSLTCPHCLKQSNTFDPFL 160

Query: 402 YLSLPLQATTTRTMTVTV--------FTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICS 453
            +SLP+    TR ++VT+        F   G A+P   TV        R ++   G +  
Sbjct: 161 CVSLPIPLRQTRFLSVTLVFPSKSQRFLRVGLAVPILSTVAA-----LRKMVAEEGGV-- 213

Query: 454 LKQSEELKVAEIQNHSIQR-FLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQ 512
              +EE+ + E+  +  QR F D+    L+TI + D++ A++VP L            L 
Sbjct: 214 --PAEEVILVELYPNGFQRSFFDEE--DLNTIAEGDNVYAFQVPPLPGPGTLAAHPPGL- 268

Query: 513 EQEPGAAQTTSQWKAYGTPLVSS----ISRDDVISSGKIQST------VQRMLSPFLKKE 562
              P  A   SQ   +  PL S     I   +++ SG+  S       + R   PFL +E
Sbjct: 269 SVSPRLAVRDSQ--RFSVPLHSENRVLILFCNLVGSGQQASRNNLFPWIFRFGPPFLIRE 326

Query: 563 SLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFD 622
               + +     +++ V             + + + S+    TL    +++V  S  C  
Sbjct: 327 DRTISWAQLQQCILSKV-----------RCLMRNEVSAQDLGTL--FSIRVVGLSLACSY 373

Query: 623 LSVEGDKTI-----------RIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPV 671
           LS +  + +           R P     + + V+W   + E+      E  ++   +   
Sbjct: 374 LSPQDSRPLCHWAVDRALHLRRPGGPPHVKLAVEWDSSVTERLFGSLQEERVQDADSVWR 433

Query: 672 TKKARTEP-LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLK 730
            ++A  +P  +L  C +++ +EE L  +D W CP C+  +Q   KL LW LP++L+IHLK
Sbjct: 434 QQQAHQQPSCTLDECFQSYTKEEQLAQDDAWKCPHCQVLQQGVVKLSLWTLPDILIIHLK 493

Query: 731 RFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQ---------------------- 768
           RF      ++KL T V FP+   N+  +VA ++++ +                       
Sbjct: 494 RFCQVGERRNKLSTLVKFPLSGLNMAPHVARRSTNSKAGPGPWSSWKQPICLPTTYPLDF 553

Query: 769 LYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           LY+LYA+ NH+G +  GHYTA+ +   + +WY++DDS + P+ ED+V +  AY+LFY++
Sbjct: 554 LYDLYAVCNHHGSLQGGHYTAYCRNSLDGQWYSYDDSTVEPLREDEVNTRGAYILFYQK 612


>gi|281343193|gb|EFB18777.1| hypothetical protein PANDA_010043 [Ailuropoda melanoleuca]
          Length = 1036

 Score =  189 bits (480), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 166/657 (25%), Positives = 270/657 (41%), Gaps = 150/657 (22%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF----------REDYRREINWQNPLG---- 319
           G  GL N GNTCFMN+ +QCL +T   A +           R  +   + W    G    
Sbjct: 1   GAQGLKNHGNTCFMNAVVQCLSNTDLLAEFLALGRYRAAPGRAPHPERVFWGPSEGTQHC 60

Query: 320 --------------------------MVELLAFLLDGLHEDLNRVKHKPYIKSKDADG-R 352
                                      +E L +LLD LHEDL      P  +    +  R
Sbjct: 61  SSAYRLCFENAVSKYGSQFQGNAQHDALEFLLWLLDRLHEDLEGSARSPGSEKPQPEATR 120

Query: 353 PDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTT 412
             E +     +  ++   S +    Q QY+S+L CP C K S TFDPF+ +SLP+    T
Sbjct: 121 TPENLPSP--SAQLSLGQSFVQSHFQAQYRSSLTCPHCLKQSNTFDPFLCVSLPIPLRQT 178

Query: 413 RTMTVT-VFTSD-------GSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAE 464
           R ++VT VF S        G A+P   TV        R ++   G +     ++E+ + E
Sbjct: 179 RFLSVTLVFPSKSQRFLRVGLAVPILSTVAA-----LRKIVAEEGGV----PADEVILVE 229

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRVPKLVKKAVF------LQLIHRLQEQEP- 516
           +     QR F D+    L+TI + D++ A+  P    + +       L +  RL  +E  
Sbjct: 230 LCPTGFQRSFFDE--EDLNTISEGDNVYAFHAPPPPGQEMLSAHPSGLSVSPRLAAREGP 287

Query: 517 --------------------GAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLS 556
                               G+ Q  S+   +G P +  +  D  IS  +++  +   + 
Sbjct: 288 RSSLPVHSENKVLVLFCNLVGSGQQASR---FGPPFL--LREDRAISWAQLRECILSKVR 342

Query: 557 PFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDE 616
             +K E+ +                      N  S  +      S A T     L   D 
Sbjct: 343 CVMKSEAPIQ---------------------NPGSLFSIRVVGLSLACTY----LSPQDS 377

Query: 617 SNVCFDLSVEGDKTIRIPSSSTSIVVYVDW----SQKLLEKYNTHFLENLLEVFKNGPVT 672
             +C   +V+     R P     I + V+W     ++L        +++   V++     
Sbjct: 378 HPLCH-WAVDRALYPRRPGGPPHIKLAVEWDSCAKERLFGGLQRERVQDADSVWRQ---Q 433

Query: 673 KKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF 732
           +  +    +L  C + + +EE L  +D W CP C+  ++   KL LW LP++L++HLKRF
Sbjct: 434 QAPQQHSCTLDECFQFYTKEEQLAQDDAWKCPHCEALQRGMVKLSLWTLPDILIVHLKRF 493

Query: 733 SYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQ----------------------LY 770
                 +HKL T V FP+   N+  +VA +++                          LY
Sbjct: 494 CQLGERRHKLSTLVKFPLSGLNMAPHVAQRSAGPPPAMGPRPPWKQPAGLPPGYPLDFLY 553

Query: 771 ELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           +LYA+ NH+G +  GHYTA+ +   + +WY++DDS +  + ED+V S  AY+LFY++
Sbjct: 554 DLYAVCNHHGTLQGGHYTAYCRNSLDGQWYSYDDSTVELLPEDEVNSRGAYILFYQK 610


>gi|321460368|gb|EFX71411.1| hypothetical protein DAPPUDRAFT_308900 [Daphnia pulex]
          Length = 869

 Score =  189 bits (479), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 112/276 (40%), Positives = 145/276 (52%), Gaps = 51/276 (18%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLG------------- 319
           G  GL NLGNTCFMNS +QC+ +TP   RYF E+ +  E+N +NPLG             
Sbjct: 248 GRCGLNNLGNTCFMNSVLQCMSNTPPIQRYFLEERHWAELNKENPLGNQGEIAKAFADLL 307

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               ELL FLLDGLHEDLNR+  KPYI+
Sbjct: 308 KAMWSGQHHSFPPRAFKLQVGRFAPQFSGYQQHDSQELLTFLLDGLHEDLNRILKKPYIE 367

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
            KDADGR DEEVA E W N+  RNDS+IVD+  G  KSTLVCP CNKVSVTFDP  YLSL
Sbjct: 368 LKDADGRSDEEVAREGWENYRKRNDSVIVDLFHGLLKSTLVCPECNKVSVTFDPTCYLSL 427

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
           P+     R + + +   D       Y V VPK G   DL + L  +C +  ++ + VA++
Sbjct: 428 PMPVKKERPVELYLARLDPEVKAMRYRVIVPKMGTILDLTEALSKLCGIP-ADHMIVADV 486

Query: 466 QNHSIQRFLDDPLISLSTIKDDDHL-AAYRVPKLVK 500
             H   +   +   S+S I + D + A + VP +++
Sbjct: 487 HQHKFHQIFTNE-SSISQISERDVIYAMFGVPFILQ 521



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/153 (52%), Positives = 101/153 (66%), Gaps = 1/153 (0%)

Query: 675 ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            + + L L  CLE F   E L  +D WYCP CK+  +A+KK DLW LPEVLVIHLKRFSY
Sbjct: 675 VKKQVLQLKECLEVFTSIERLGADDAWYCPSCKKHVRATKKFDLWSLPEVLVIHLKRFSY 734

Query: 735 SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
           +RS++ KL+T V FP    N+  Y+ + N     +Y+L  + NHYGG+G GHYTA+ K  
Sbjct: 735 TRSLRDKLDTLVEFPTRGLNMAPYIIDPN-PMDAVYDLIGVCNHYGGLGGGHYTAYAKNK 793

Query: 795 DENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           D+  WY FDDS +S  +ED V S AAYVLFY R
Sbjct: 794 DDGSWYYFDDSSVSESSEDSVCSKAAYVLFYIR 826


>gi|395516301|ref|XP_003762329.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19 [Sarcophilus
           harrisii]
          Length = 1379

 Score =  188 bits (478), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 117/292 (40%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   YF +  +  EIN+ NPLG             
Sbjct: 550 GFTGLVNLGNTCFMNSVIQSLSNTRELRDYFHDRSFEAEINYSNPLGTGGRLAIGFAVLL 609

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 610 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 669

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA E W  H  RNDS IVD+  GQYKS LVCPVC+KVS+TFDPF+YL +
Sbjct: 670 TVDSDGRPDEVVAQEAWQRHKMRNDSFIVDLFHGQYKSKLVCPVCSKVSITFDPFLYLPV 729

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + +TV  F  +    P  + V++ K +    +++  L     +K  E L++AE
Sbjct: 730 PL-PQKQKVLTVYYFAKEPHKKPVKFLVSISKENSSAMEVLDSLAQSVHVK-PESLRLAE 787

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + V  P+L K + V LQ+  R Q
Sbjct: 788 VIKNRFHRVFL--PSHSLDTVSPTDLLLCFEVLSPELAKERVVVLQVQQRPQ 837



 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 76/167 (45%), Positives = 107/167 (64%), Gaps = 11/167 (6%)

Query: 671  VTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLK 730
             ++ AR    +L  CL  F + E L PE+ WYCP+CK+ R+ASK+L LWRLP VL+I LK
Sbjct: 1109 ASEAARAGHFTLEQCLNLFTKPEVLAPEEAWYCPKCKQHREASKQLMLWRLPNVLIIQLK 1168

Query: 731  RFSYSRSM--KHKLETFVNFPIHDFNLTKY-VANKNSSRRQLYELYALTNHYGGMGSGHY 787
            RFS+ RS   + K+   V FP+ + +L+K+ +  K+  +   Y+LYA+ NHYGGM  GHY
Sbjct: 1169 RFSF-RSFIWRDKINDMVEFPLRNLDLSKFCIGQKDDRQLPTYDLYAVINHYGGMIGGHY 1227

Query: 788  TAHIKLL-DENR------WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            TA+ +L  D+N       W  FDDS ++ ++E  V +  AYVLFYRR
Sbjct: 1228 TAYARLPSDKNSQRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRR 1274


>gi|340368234|ref|XP_003382657.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4-like [Amphimedon
           queenslandica]
          Length = 884

 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 144/434 (33%), Positives = 198/434 (45%), Gaps = 44/434 (10%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  Y   D         S  +H  +AG   S  P  ID S+L  D + E       
Sbjct: 115 WFKQWKKYTGFD---------SWDQH--TAGEPGS-NPGPIDTSNLFKDPSKE------T 156

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYGGGPT---LARKVISSGLSQTELAVEVYPLRLQL 117
           + D L+E  DY LLPQ  W +L +WYG   T   + R V+  G     L VEVY + L+L
Sbjct: 157 LNDHLMEELDYALLPQPAWEKLVAWYGLASTSKPICRNVVEYGTYVKHLKVEVYLIDLKL 216

Query: 118 LVMPRG-ECSTIRISKKETIGELHRRACSIFYL-NLEQICIWDYYGHRKHALMNDMDRTL 175
            + P   E  T   S+ +TI  LH +   IF + N E+  +W  Y    + L+ +  +T+
Sbjct: 217 TLHPHANEIKTHSFSRSDTIKTLHEKLVEIFEVSNDEETRLWQRYMTNSYELLTNQSQTV 276

Query: 176 DDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASK 235
            DA I   Q IL+E           S++   G +    +  +     S+L   G  +   
Sbjct: 277 SDAGIYGGQMILLEKKTKDGQWARSSTVGLCGLSNLGNTCFM----NSALQCLG--NTKP 330

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
                   E           + +N LG  GV        L  + N  N+       + ++
Sbjct: 331 LVEYFIGKEGEAEKPYKKHINRNNPLGMGGVIAETYGSLLDEMWNGQNSYLAPRQFKNII 390

Query: 296 --HTPEFARYFREDYRREINWQNPLGMVELLAFLLDGLHEDLNRVKHKPYIKSK-DADGR 352
             H P+F+ Y + D              ELLAFLLDGLHEDLN VK KPY+      DGR
Sbjct: 391 GRHAPQFSGYSQHDSH------------ELLAFLLDGLHEDLNLVKKKPYVDMDIKTDGR 438

Query: 353 PDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTT 412
            D ++A E W  ++ RN S+IV + QGQ KSTL CP C+K S  FDPFMYLSLPL    T
Sbjct: 439 DDNDIARETWLKYLQRNQSVIVRLFQGQLKSTLHCPKCDKESRIFDPFMYLSLPLPVLNT 498

Query: 413 RTMTVTVFTSDGSA 426
           R + V    +D SA
Sbjct: 499 RDIEVFFVRTDPSA 512



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 78/156 (50%), Positives = 117/156 (75%), Gaps = 4/156 (2%)

Query: 675 ARTEP---LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKR 731
           A  EP   +++Y C++ F+ +E L  +D WYCPQCKE  QASKK DLW++PE+LVIHLKR
Sbjct: 667 ATKEPKKAITVYGCMDLFVNKEVLGEDDAWYCPQCKEHVQASKKFDLWKMPEILVIHLKR 726

Query: 732 FSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHI 791
           FSY+R  ++K+E+ V FP+ + +L+ YV N+    + LY+L+A++NH+GG+G GHYTA+ 
Sbjct: 727 FSYNRYFRNKIESKVEFPLENLDLSDYVVNQEEP-QPLYDLFAVSNHFGGLGGGHYTAYA 785

Query: 792 KLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           K  D  +WY+FDDSH+S  + + + S+A+Y+LFY+R
Sbjct: 786 KNKDNGKWYSFDDSHVSEASPESICSSASYLLFYQR 821


>gi|390345682|ref|XP_003726385.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 32
           [Strongylocentrotus purpuratus]
          Length = 1718

 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 144/492 (29%), Positives = 201/492 (40%), Gaps = 152/492 (30%)

Query: 37  RPSGIDNSDLVND------ATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGP 90
           +P  IDN+ LV        +T  + G        + + +DY ++P  VW  L  WY GGP
Sbjct: 545 KPGPIDNTSLVAADNKKQVSTLTNEGGRLRRHPPISQNKDYEIIPDPVWKALALWYAGGP 604

Query: 91  TLARKVISSGLSQ--TELAVEVYPLRLQLL------------------------------ 118
            L R VI    +Q  T   +E+YPL ++LL                              
Sbjct: 605 ALPRNVIVQPTTQGNTSCKLELYPLCVKLLRHQTPQVKQNGWSGVNLGLGNISLSSSGLG 664

Query: 119 -----------VMPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHAL 167
                         R +      SK  T+ ++H    +   +  E++ +W+        +
Sbjct: 665 INISGNSGTPQAPKRYQAYVACFSKMHTLQQVHDFLSARLRVRTEEMRLWNLKDENNPVV 724

Query: 168 MNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSI 227
           + +   TLD   I  +Q +L+E+                                     
Sbjct: 725 LEEDSSTLDQLGIADEQSLLIEI------------------------------------- 747

Query: 228 AGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFM 287
                      RN         +L + + +D    SS  T +G +    GL NLGNTCFM
Sbjct: 748 -----------RNKDLSWPEEMSLLAKKKADRQ--SSVRTDKGVT----GLSNLGNTCFM 790

Query: 288 NSAIQCLVHTPEFARYFR-EDYRREINWQNPLGMV------------------------- 321
           NSA+QC+ +T     YF+ + Y  E+N  NPLGM                          
Sbjct: 791 NSAVQCISNTQPLRLYFQTKSYLYELNPTNPLGMKGHLAKRYGDLCNDLWSGTARSIAPL 850

Query: 322 ----------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVAD 359
                                 ELLAFLLDGLHEDLNRV  KPY++ KD+DGRPDEEVA 
Sbjct: 851 KLRWTIAKYAPRFSGFQQHDSQELLAFLLDGLHEDLNRVHEKPYVELKDSDGRPDEEVAT 910

Query: 360 EYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTV 419
           E W NH+ RN S+IVD+ QGQ KS + C  C  +SV FDPF +LSLPL   ++  + + V
Sbjct: 911 EAWENHLIRNKSVIVDLFQGQLKSQVRCKTCGHISVRFDPFTFLSLPLPMESSMHVEIVV 970

Query: 420 FTSDGSALPSTY 431
              DGS +P  Y
Sbjct: 971 VRLDGS-VPVKY 981



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 77/131 (58%)

Query: 642  VYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMW 701
            + ++W    L     +  E  +   ++   +++ +TEP++L  CL AF +EE L  ++++
Sbjct: 1300 IAIEWDPTALHLRYQNSQERFVTEHESCENSRRLQTEPINLDDCLRAFTKEEELGEDELY 1359

Query: 702  YCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVAN 761
            YC +CK+ R A+KKLD+WRLP +L++HLKRF        K +  V FP  +FN++ +V  
Sbjct: 1360 YCSKCKQHRLAAKKLDIWRLPPILIVHLKRFQSVNGRWVKSQKIVKFPKRNFNVSNFVVP 1419

Query: 762  KNSSRRQLYEL 772
            K  +  ++ ++
Sbjct: 1420 KGDTEPRIIDV 1430



 Score = 47.4 bits (111), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 768  QLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
            Q+Y+LY + +H G +G GHY ++  +    +WY ++DS +  + E ++    AY+LFY
Sbjct: 1624 QMYDLYGVVSHTGILGGGHYVSY-SVNPNKKWYCYNDSSVKEVKE-EIDMDNAYMLFY 1679


>gi|395531796|ref|XP_003767959.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 32-like, partial
           [Sarcophilus harrisii]
          Length = 982

 Score =  187 bits (476), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 153/517 (29%), Positives = 220/517 (42%), Gaps = 131/517 (25%)

Query: 36  KRPSGIDNSDLVNDATAED-----PGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGP 90
           ++P  IDN  LV     +       G   +    L+ GRDY ++P+ VW  L+ WYG   
Sbjct: 457 QKPGAIDNQPLVTQEPVKATSLTLEGGRLKRAPQLIHGRDYEMVPEPVWRALYHWYGANL 516

Query: 91  TLARKVISSGLSQTELAVEVYPLRLQLLVMPRGECSTIRISKKETIGELHRRACSIFYLN 150
            L R V         +     PL+    V+    C     S+ +TI E+H        + 
Sbjct: 517 ALPRPV-------RNVPSPNAPLKR---VLAYTGC----FSRMQTIKEIHEYLSQRLRIK 562

Query: 151 LEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAE 210
            E + +W Y       L++D             +D ++E L           IQD     
Sbjct: 563 EEDMRLWLYNSENYLTLLDD-------------EDHMLEYL----------KIQDE---- 595

Query: 211 KKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRG 270
                +++E     +S     S    +S+    ++ T                       
Sbjct: 596 ---QHLVIEVRNKDMSWPEEMSFIANSSKIDRHKVPTEK--------------------- 631

Query: 271 ASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF---REDYRREINWQNPLGMV------ 321
              G TGL NLGNTCFMNS+IQC+ +T    +YF   R  Y  E+N  NP+GM       
Sbjct: 632 ---GATGLSNLGNTCFMNSSIQCVSNTQPLTQYFISGRHLY--ELNRTNPIGMKGHMAKC 686

Query: 322 -----------------------------------------ELLAFLLDGLHEDLNRVKH 340
                                                    ELLAFLLDGLHEDLNRV  
Sbjct: 687 YGDLVQELWSGTQKNVAPLKLRWTIAKYAPRFNGFQQQDSQELLAFLLDGLHEDLNRVHE 746

Query: 341 KPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPF 400
           KPY++ KD+DGRPD EVA E W NH+ RN SI+VD+  GQ +S + C  C  +SV FDPF
Sbjct: 747 KPYVELKDSDGRPDWEVAAEAWDNHLRRNRSIVVDLFHGQLRSQVRCKTCGHISVRFDPF 806

Query: 401 MYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEEL 460
            +LSLPL   +   + +TV   DG+  P  Y + +    +   L + L ++C LK  E++
Sbjct: 807 NFLSLPLPMDSYMHLEITVIKLDGTT-PIRYGLRLNMDEKYTGLKKQLSDLCGLK-PEQI 864

Query: 461 KVAEIQNHSIQRF-LDDPLISLSTIKDDDHLAAYRVP 496
            +AE+   +I+ F  D+  + LS       L A+ +P
Sbjct: 865 LLAEVHGSNIKNFPQDNQKVRLSV---SGFLCAFEIP 898


>gi|395845888|ref|XP_003795651.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 32 [Otolemur
           garnettii]
          Length = 1604

 Score =  187 bits (476), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 154/522 (29%), Positives = 223/522 (42%), Gaps = 141/522 (27%)

Query: 36  KRPSGIDNSDLVNDATAED-----PGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGP 90
           ++P  IDN  LV     +       G   +    L+ GRDY ++P+ VW  L+ WYG   
Sbjct: 519 QKPGAIDNQPLVTQEPVKATSLTLEGGRLKRTPQLIHGRDYEMVPEPVWRALYHWYGANL 578

Query: 91  TLARKVISSGLSQTELA-VEVYP---LRLQLLVMPRGECSTIRI---------------- 130
            L R VI +  S+T++  +E++P   L L+     R + S I +                
Sbjct: 579 ALPRPVIKN--SKTDIPELELFPRYLLFLRQQPASRTQQSNIWVNMGNVPSPNAPLKRVL 636

Query: 131 ------SKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQ 184
                 S+ +TI E+H        +  E + +W Y       L++             D+
Sbjct: 637 AYTGCFSRMQTIKEIHEYLSQRLRIKEEDMRLWLYNSENYLTLLD-------------DE 683

Query: 185 DILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSE 244
           D  +E L           IQD          +++E     +S     S    +S+    +
Sbjct: 684 DHRLEYL----------KIQDE-------QHLVIEVRNKDMSWPEEMSFIANSSKIDRHK 726

Query: 245 ISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF 304
           + T                          G TGL NLGNTCFMNS+IQC+ +T    +YF
Sbjct: 727 VPTEK------------------------GATGLSNLGNTCFMNSSIQCVSNTQPLTQYF 762

Query: 305 ---REDYRREINWQNPLGMV---------------------------------------- 321
              R  Y  E+N  NP+GM                                         
Sbjct: 763 ISGRHLY--ELNRTNPIGMKGHMAKCYGDLVQELWSGTQKNVAPLKLRWTIAKYAPRFNG 820

Query: 322 -------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIV 374
                  ELLAFLLDGLHEDLNRV  KPY++ KD+DGRPD EVA E W NH+ RN SI+V
Sbjct: 821 FQQQDSQELLAFLLDGLHEDLNRVHEKPYVELKDSDGRPDWEVAAEAWDNHLRRNRSIVV 880

Query: 375 DVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVT 434
           D+  GQ +S + C  C  +SV FDPF +LSLPL   +   + +TV   DG+  P  Y + 
Sbjct: 881 DLFHGQLRSQVKCKTCGHISVRFDPFNFLSLPLPMDSYMHLEITVIKLDGTT-PVRYGLR 939

Query: 435 VPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDD 476
           +    +   L + L ++C L  SE++ +AE+   +I+ F  D
Sbjct: 940 LNMDEKYTGLKKQLSDLCGL-NSEQILLAEVHGSNIKNFPQD 980



 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 75/125 (60%), Gaps = 2/125 (1%)

Query: 642  VYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
            + VDW    L  +Y T   E +++  ++   +++A+ EP++L +CL AF  EE L   +M
Sbjct: 1195 IAVDWDPTALHLRYQTS-QERVVDEHESVEQSRRAQAEPINLDSCLRAFTSEEELGENEM 1253

Query: 701  WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
            +YC +CK    A+KKLDLWRLP +L+IHLKRF +      K +  V FP  +F+ + ++ 
Sbjct: 1254 YYCSKCKTHCLATKKLDLWRLPPILIIHLKRFQFVSGRWIKSQKIVKFPRENFDPSAFLV 1313

Query: 761  NKNSS 765
             ++ +
Sbjct: 1314 PRDPA 1318



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 40/62 (64%), Gaps = 3/62 (4%)

Query: 767  RQLYELYALTNHYGGMGSGHYTAHIKLLDEN-RWYNFDDSHISPINEDDVKSAAAYVLFY 825
            + +Y LYA++ H G +G GHY  + K  + N +WY ++DS    ++ D++ + +AY+LFY
Sbjct: 1507 KPIYNLYAISCHSGILGGGHYVTYAK--NPNCKWYCYNDSSCKELHPDEIDTDSAYILFY 1564

Query: 826  RR 827
             +
Sbjct: 1565 EQ 1566


>gi|301770391|ref|XP_002920596.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19-like
           [Ailuropoda melanoleuca]
          Length = 1222

 Score =  187 bits (476), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 115/292 (39%), Positives = 157/292 (53%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 436 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 495

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 496 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 555

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 556 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 615

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V++ K +    ++++ L     +K SE L++AE
Sbjct: 616 PL-PQKQKVLPVFYFAREPHSKPIKFLVSISKENSSASEVLESLSQSVHVK-SENLRLAE 673

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +  P+L K + V L++  R Q
Sbjct: 674 VIKNRFHRVFL--PSHSLDTVSPSDTLLCFELLPPELAKERVVVLEVQQRPQ 723



 Score =  152 bits (385), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 90/237 (37%), Positives = 126/237 (53%), Gaps = 26/237 (10%)

Query: 607  PNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF 666
            P   +  +D SN    L  +GD         T + +  D S  L+ + N    E +L   
Sbjct: 928  PQFFIYKIDASNREQRLEDKGD---------TPLELGEDCSLALVWRNNERLQEFVLVAS 978

Query: 667  KN-------GPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLW 719
            K        G   + AR    +L  CL  F R E L PE+ WYCPQCK+ R+ASK+L LW
Sbjct: 979  KELECAEDPGSAGEAARAGHFTLDQCLNLFTRPEVLAPEEAWYCPQCKQHREASKQLLLW 1038

Query: 720  RLPEVLVIHLKRFSYSRSM--KHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTN 777
            RLP VL++ LKRFS+ RS   + K+   V FP+ + +L+K+   +   +   Y+LYA+ N
Sbjct: 1039 RLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPVRNLDLSKFCIGQKEEQLPSYDLYAVIN 1097

Query: 778  HYGGMGSGHYTAHIKLLDENR-------WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            HYGGM  GHYTA  +L ++         W  FDDS ++ ++E  V +  AYVLFYRR
Sbjct: 1098 HYGGMIGGHYTACARLPNDRSSQRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRR 1154


>gi|332258921|ref|XP_003278539.1| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal
           hydrolase 32 [Nomascus leucogenys]
          Length = 1568

 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 157/535 (29%), Positives = 225/535 (42%), Gaps = 137/535 (25%)

Query: 18  GDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAED-----PGAGPEIVDTLLEGRDYI 72
           G   ++L H N       ++P  IDN  LV     +       G   +    L+ GRDY 
Sbjct: 509 GANGNILLHLNP------QKPGAIDNQPLVTQEPVKATSLTLEGGRLKRTPQLIHGRDYE 562

Query: 73  LLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVMPRGECSTIRISK 132
           ++P+ VW  L+ WYG    L R V         +     PL+    V+    C     S+
Sbjct: 563 MVPEPVWRALYHWYGANLALPRPV-------RNVPSPNAPLKR---VLAYTGC----FSR 608

Query: 133 KETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLD 192
            +TI E+H        +  E + +W Y       L++             D+D  +E L 
Sbjct: 609 MQTIKEIHEYLSQRLRIKEEDMRLWLYNSENYLTLLD-------------DEDHQLEYL- 654

Query: 193 NVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLA 252
                     IQD          +++E     +S     S    +S+    ++ T     
Sbjct: 655 ---------KIQDE-------QHLVIEVRNKDMSWPEEMSFIANSSKIDRHKVPTEK--- 695

Query: 253 SARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF---REDYR 309
                                G TGL NLGNTCFMNS+IQC+ +T    +YF   R  Y 
Sbjct: 696 ---------------------GATGLSNLGNTCFMNSSIQCVSNTQPLTQYFISGRHLY- 733

Query: 310 REINWQNPLGMV-----------------------------------------------E 322
            E+N  NP+GM                                                E
Sbjct: 734 -ELNRTNPIGMKGHMAKCYGDLVQELWSGTQKNVAPLKLRWTIAKYAPRFNGFQQQDSQE 792

Query: 323 LLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYK 382
           LLAFLLDGLHEDLNRV  KPY++ KD+DGRPD EVA E W NH+ RN SI+VD+  GQ +
Sbjct: 793 LLAFLLDGLHEDLNRVHEKPYVELKDSDGRPDWEVAAEAWDNHLRRNRSIVVDLFHGQLR 852

Query: 383 STLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCR 442
           S + C  C  +SV FDPF +LSLPL   +   + +TV   DG+  P  Y + +    +  
Sbjct: 853 SQVKCKTCGHISVRFDPFNFLSLPLPMDSYMHLEITVIKLDGTT-PVRYGLRLNMDEKYT 911

Query: 443 DLIQVLGNICSLKQSEELKVAEIQNHSIQRF-LDDPLISLSTIKDDDHLAAYRVP 496
            L + L ++C L  SE++ +AE+   +I+ F  D+  + LS       L A+ +P
Sbjct: 912 GLKKQLSDLCGL-NSEQILLAEVHGSNIKNFPQDNQKVRLSV---SGFLCAFEIP 962



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 74/125 (59%), Gaps = 2/125 (1%)

Query: 642  VYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
            + VDW    L  +Y T   E +++  ++   +++A+ EP++L +CL AF  EE L   +M
Sbjct: 1159 IAVDWDPTALHLRYQTS-QERVVDEHESVEQSRRAQAEPINLDSCLRAFTSEEELGENEM 1217

Query: 701  WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
            +YC +CK    A+KKLDLWRLP +L+IHLKRF +      K +  V FP   F+ + ++ 
Sbjct: 1218 YYCSKCKTHCLATKKLDLWRLPPILIIHLKRFQFVNGRWIKSQKIVKFPRESFDPSAFLV 1277

Query: 761  NKNSS 765
             ++ +
Sbjct: 1278 PRDPA 1282



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 40/62 (64%), Gaps = 3/62 (4%)

Query: 767  RQLYELYALTNHYGGMGSGHYTAHIKLLDEN-RWYNFDDSHISPINEDDVKSAAAYVLFY 825
            + +Y LYA++ H G +G GHY  + K  + N +WY ++DS    ++ D++ + +AY+LFY
Sbjct: 1471 KPIYNLYAISCHSGILGGGHYVTYAK--NPNCKWYCYNDSSCKELHPDEIDTDSAYILFY 1528

Query: 826  RR 827
             +
Sbjct: 1529 EQ 1530


>gi|403291358|ref|XP_003936762.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19 [Saimiri
           boliviensis boliviensis]
          Length = 1482

 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/292 (39%), Positives = 156/292 (53%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 696 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 755

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 756 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 815

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 816 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 875

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 876 PL-PQKQKVLPVFYFAREPHSKPVKFLVSVSKENSTASEVLDSLSQSVHVK-PENLRLAE 933

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +  QR FL  P  SL T+   D L  + +  P+L K + V L++  R Q
Sbjct: 934 VIKNRFQRVFL--PSHSLDTVSPSDMLLCFELLSPELAKERVVVLEVQQRPQ 983



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 90/237 (37%), Positives = 126/237 (53%), Gaps = 26/237 (10%)

Query: 607  PNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF 666
            P   +  +D SN    L  +GD         T + +  D S  L+ + N    E +L   
Sbjct: 1188 PQFFIYKIDSSNREQRLEDKGD---------TPLELGDDCSLALVWRNNERLQEFVLVAS 1238

Query: 667  KN-------GPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLW 719
            K        G   + AR    +L  CL  F R E L PE+ WYCPQCK+ R+ASK+L LW
Sbjct: 1239 KELECAEDPGSAGEAARAGHFTLDQCLNLFTRPEVLAPEEAWYCPQCKQHREASKQLLLW 1298

Query: 720  RLPEVLVIHLKRFSYSRSM--KHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTN 777
            RLP VL++ LKRFS+ RS   + K+   V FP+ + +L+K+   +   +   Y+LYA+ N
Sbjct: 1299 RLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPVRNLDLSKFCIGQKEEQLSSYDLYAVIN 1357

Query: 778  HYGGMGSGHYTAHIKLLDENR-------WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            HYGGM  GHYTA  +L ++         W  FDDS ++ ++E  V +  AYVLFYRR
Sbjct: 1358 HYGGMIGGHYTACARLPNDRSSQRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRR 1414


>gi|327266242|ref|XP_003217915.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19-like [Anolis
           carolinensis]
          Length = 1414

 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/293 (40%), Positives = 156/293 (53%), Gaps = 59/293 (20%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLGM------------ 320
           G TGL+NLGNTCFMNS IQ L +T E   YF +  +  EIN+ NPLG             
Sbjct: 568 GFTGLVNLGNTCFMNSVIQSLSNTRELRDYFHDRSFESEINYNNPLGTGGRLAIGFAVLL 627

Query: 321 -----------------------------------VELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 628 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 687

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC+KVS+TFDPF+YL +
Sbjct: 688 TVDSDGRPDEVVAEEAWHRHKMRNDSFIVDLFQGQYKSKLVCPVCSKVSITFDPFLYLPV 747

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNIC-SLK-QSEELKVA 463
           PL     + +TV  F  +    P  + V++ K       ++VL ++  S++   E L++A
Sbjct: 748 PL-PQKQKVLTVYYFAKEPHKKPVKFLVSISKENST--AMEVLDSVSHSVRVNPENLRLA 804

Query: 464 EIQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           E+  +   R FL  P  SL  +   D L  + V  P L K + V LQ+  R Q
Sbjct: 805 EVIKNRFHRMFL--PSHSLDAVSPSDLLLCFEVLSPDLAKERVVELQVQQRPQ 855



 Score =  154 bits (388), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 77/169 (45%), Positives = 109/169 (64%), Gaps = 11/169 (6%)

Query: 669  GPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIH 728
            G  ++ AR    +L  CL  F + E L PE+ WYCP+CK+ R+ASK+L LWRLP VL+I 
Sbjct: 1143 GSASEAARAGHFTLEQCLNLFTKPEVLAPEEAWYCPKCKQHREASKQLMLWRLPNVLIIQ 1202

Query: 729  LKRFSYSRSM--KHKLETFVNFPIHDFNLTKY-VANKNSSRRQLYELYALTNHYGGMGSG 785
            LKRFS+ RS   + K+   V+FP+   +L+K+ +  K+  +  +Y+LYA+ NHYGGM  G
Sbjct: 1203 LKRFSF-RSFIWRDKINDMVDFPVRSLDLSKFCIGQKDEQQLPMYDLYAVINHYGGMIGG 1261

Query: 786  HYTAHIKLL-DENR------WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            HYTA+ +L  D+N       W  FDDS ++ ++E  V +  AYVLFYRR
Sbjct: 1262 HYTAYARLPSDKNSQRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRR 1310


>gi|281338356|gb|EFB13940.1| hypothetical protein PANDA_009359 [Ailuropoda melanoleuca]
          Length = 1359

 Score =  187 bits (474), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 115/292 (39%), Positives = 157/292 (53%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 536 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 595

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 596 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 655

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 656 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 715

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V++ K +    ++++ L     +K SE L++AE
Sbjct: 716 PL-PQKQKVLPVFYFAREPHSKPIKFLVSISKENSSASEVLESLSQSVHVK-SENLRLAE 773

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +  P+L K + V L++  R Q
Sbjct: 774 VIKNRFHRVFL--PSHSLDTVSPSDTLLCFELLPPELAKERVVVLEVQQRPQ 823



 Score =  152 bits (383), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 90/237 (37%), Positives = 126/237 (53%), Gaps = 26/237 (10%)

Query: 607  PNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF 666
            P   +  +D SN    L  +GD         T + +  D S  L+ + N    E +L   
Sbjct: 1028 PQFFIYKIDASNREQRLEDKGD---------TPLELGEDCSLALVWRNNERLQEFVLVAS 1078

Query: 667  KN-------GPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLW 719
            K        G   + AR    +L  CL  F R E L PE+ WYCPQCK+ R+ASK+L LW
Sbjct: 1079 KELECAEDPGSAGEAARAGHFTLDQCLNLFTRPEVLAPEEAWYCPQCKQHREASKQLLLW 1138

Query: 720  RLPEVLVIHLKRFSYSRSM--KHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTN 777
            RLP VL++ LKRFS+ RS   + K+   V FP+ + +L+K+   +   +   Y+LYA+ N
Sbjct: 1139 RLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPVRNLDLSKFCIGQKEEQLPSYDLYAVIN 1197

Query: 778  HYGGMGSGHYTAHIKLLDENR-------WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            HYGGM  GHYTA  +L ++         W  FDDS ++ ++E  V +  AYVLFYRR
Sbjct: 1198 HYGGMIGGHYTACARLPNDRSSQRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRR 1254


>gi|226443061|ref|NP_001028345.1| ubiquitin specific protease 31 [Mus musculus]
          Length = 1344

 Score =  187 bits (474), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 168/678 (24%), Positives = 266/678 (39%), Gaps = 165/678 (24%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFR-EDYR----------REINWQNPLG--- 319
           G+ GL N GNTCFMN+ +QCL +T  FA Y     YR           +   + P G   
Sbjct: 121 GVAGLRNHGNTCFMNATLQCLSNTELFAEYLALGQYRAGRPEPEPESEQPAGRGPHGQGE 180

Query: 320 MVELLAFLLDGL-------------------------------------------HEDLN 336
           + E LA L+  L                                           HEDLN
Sbjct: 181 VTEQLAHLVRALWTLEYTPQHSRDFKSIVSKNALQYRGNSQHDAQEFLLWLLDRVHEDLN 240

Query: 337 RVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVT 396
                   +S     +P  E  D           + + ++ Q QY+S+L CP C K S T
Sbjct: 241 HA----VKQSGQPPLKPPSET-DMMPEGPFPVCSTFVQELFQAQYRSSLTCPHCQKQSNT 295

Query: 397 FDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHG---RCRDLIQVLGNICS 453
           FDPF+ +SLP+    TR + VTV      +      V VP  G   R R+ + +   I  
Sbjct: 296 FDPFLCISLPIPLPHTRPLYVTVVYQGKCSHCMRIGVAVPLSGTVARLREAVSMETKI-- 353

Query: 454 LKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLI----- 508
              ++++ + E+      R   D    L T+ + D + A+  P++ +    L        
Sbjct: 354 --PTDQIVLTEMYYDGFHRSFSD-TDDLETVHESDCIFAFETPEIFRPEGILSQRGIHLN 410

Query: 509 ------------HRLQEQEPGAAQ------------------------TTSQWKAYGTPL 532
                       HRL    P AA+                        T  Q K +G P 
Sbjct: 411 NNLNHLKFGLDHHRLSSPAPTAAKQGRVDLPTRVASDKIVLLVCNRACTGQQGKRFGLPF 470

Query: 533 VSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSN 592
           V  +  +  ++   +Q  +   +  FL+    +    F                      
Sbjct: 471 V--LHLEKTVAWDLLQKEILEKMKYFLRPTVSIQVCPF---------------------- 506

Query: 593 IAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLE 652
                  S + V++  +   L  E       +VE       P  +  + + V+W ++  +
Sbjct: 507 -------SLRVVSVVGITYLLPQEEQPLCHPTVERALKSCGPGGTAHVKLVVEWDKETKD 559

Query: 653 KYNTHFLENLLEVFKNGPVTKKARTEP--LSLYTCLEAFLREEPLVPEDMWYCPQCKERR 710
               +  +  +   ++  + K+   +P   +L  C + + +EE L P+D W CP CK+ +
Sbjct: 560 FLFVNTEDEYIPDAESVRLQKEQHHQPQTCTLSQCFQLYTKEERLAPDDAWRCPHCKQLQ 619

Query: 711 QASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSS----- 765
           Q S  L LW LP+VL+IHLKRF      + KL+  V FP+   ++T +V  ++ S     
Sbjct: 620 QGSITLSLWTLPDVLIIHLKRFRQEGDRRMKLQNMVKFPLTGLDMTPHVVKRSQSSWSLP 679

Query: 766 ------RRQ----------LYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISP 809
                 RR           +Y+LYA+ NH+G M  GHYTA+ K   +  WY FDDS +  
Sbjct: 680 SHWSPWRRPYGLGRDPEDYIYDLYAVCNHHGTMQGGHYTAYCKNSVDGLWYCFDDSDVQQ 739

Query: 810 INEDDVKSAAAYVLFYRR 827
           ++ED+V +  AY+LFY+R
Sbjct: 740 LSEDEVCTQTAYILFYQR 757


>gi|390475153|ref|XP_003734910.1| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal
           hydrolase 19 [Callithrix jacchus]
          Length = 1489

 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 115/292 (39%), Positives = 156/292 (53%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 703 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 762

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 763 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 822

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 823 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 882

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V++ K +    +++  L     +K  E L++AE
Sbjct: 883 PL-PQKQKVLPVFYFAREPHSKPVKFLVSISKENSTASEVLDSLSQSVHVK-PENLRLAE 940

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +  QR FL  P  SL T+   D L  + +  P+L K + V L++  R Q
Sbjct: 941 VIKNRFQRVFL--PSHSLDTVSPSDMLLCFELLSPELAKERVVVLEVQQRPQ 990



 Score =  152 bits (384), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 90/237 (37%), Positives = 126/237 (53%), Gaps = 26/237 (10%)

Query: 607  PNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF 666
            P   +  +D SN    L  +GD         T + +  D S  L+ + N    E +L   
Sbjct: 1195 PQFFIYKIDSSNREQRLEDKGD---------TPLELGDDCSLALVWRNNERLQEFVLVAS 1245

Query: 667  KN-------GPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLW 719
            K        G   + AR    +L  CL  F R E L PE+ WYCPQCK+ R+ASK+L LW
Sbjct: 1246 KELECAEDPGSAGEAARAGHFTLDQCLNLFTRPEVLAPEEAWYCPQCKQHREASKQLLLW 1305

Query: 720  RLPEVLVIHLKRFSYSRSM--KHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTN 777
            RLP VL++ LKRFS+ RS   + K+   V FP+ + +L+K+   +   +   Y+LYA+ N
Sbjct: 1306 RLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPVRNLDLSKFCIGQKEEQLPNYDLYAVIN 1364

Query: 778  HYGGMGSGHYTAHIKLLDENR-------WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            HYGGM  GHYTA  +L ++         W  FDDS ++ ++E  V +  AYVLFYRR
Sbjct: 1365 HYGGMIGGHYTACARLPNDRSSQRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRR 1421


>gi|410898910|ref|XP_003962940.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19-like [Takifugu
            rubripes]
          Length = 1589

 Score =  186 bits (472), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 159/292 (54%), Gaps = 57/292 (19%)

Query: 274  GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLGM------------ 320
            G TGL+NLGNTCFMNS IQ L +T E   YF +  +  EIN  NPLG             
Sbjct: 745  GFTGLVNLGNTCFMNSVIQSLSNTRELRDYFLDRGFEAEINCSNPLGTGGRLAIGFAVLL 804

Query: 321  -----------------------------------VELLAFLLDGLHEDLNRVKHKPYIK 345
                                                E +AFLLDGLHEDLNR+++KPY +
Sbjct: 805  RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 864

Query: 346  SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
            + D+DGR DE VADE W  H  RNDS IVD+ QGQ+KS LVCP+C+KVS+TFDPF+YL +
Sbjct: 865  TVDSDGRLDEVVADEAWQRHKMRNDSFIVDLFQGQFKSKLVCPMCSKVSITFDPFLYLPV 924

Query: 406  PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
            PL     + ++V  F  +    P  ++V+V K + R  ++++ +     +K  E L++AE
Sbjct: 925  PL-PQKQKVLSVYYFAKEPHKKPIKFSVSVSKENSRTAEVLESISRNVRVK-PENLRLAE 982

Query: 465  IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
            +  +  QR FL  P  SL T+   D L  + +   ++ K + VFL++  +LQ
Sbjct: 983  VGKNRFQRMFL--PSHSLDTVTSTDMLFCFELLSKEMAKERVVFLRVQQKLQ 1032



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 77/168 (45%), Positives = 108/168 (64%), Gaps = 12/168 (7%)

Query: 671  VTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLK 730
            +++ AR    SL  CL  F + E L PE+ WYCP+C++ R+ASK+L LWRLP VL+I LK
Sbjct: 1348 LSETARAGHFSLEQCLNLFTKPEVLAPEEAWYCPKCQQHREASKQLLLWRLPNVLIIQLK 1407

Query: 731  RFSYSRSM--KHKLETFVNFPIHDFNLTKYVANKNSSRRQ--LYELYALTNHYGGMGSGH 786
            RFS+ RS   + K+   V+FPI + +L+K+        +Q  +Y+LYA+ NHYGGM  GH
Sbjct: 1408 RFSF-RSFIWRDKINDMVDFPIRNLDLSKFCIGMKDEMQQPPIYDLYAVINHYGGMIGGH 1466

Query: 787  YTAHIKL-LDENR------WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            YTA+ +L  D+N       W  FDDS ++ ++E  V +  AYVLFYRR
Sbjct: 1467 YTAYARLPSDKNSQRSDVGWRLFDDSTVTMVDESQVVTRYAYVLFYRR 1514


>gi|410951153|ref|XP_003982264.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19 [Felis catus]
          Length = 1222

 Score =  186 bits (472), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 156/292 (53%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 436 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 495

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 496 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 555

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 556 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 615

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V++ K +    ++++ L     +K  E L++AE
Sbjct: 616 PL-PQKQKVLPVFYFAREPHSKPIKFLVSISKENSSASEVLESLSQSAHVK-PENLRLAE 673

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +  P+L K + V L++  R Q
Sbjct: 674 VIKNRFHRVFL--PSHSLDTVSPSDTLLCFELLSPELAKERVVVLEVQQRPQ 723



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 136/264 (51%), Gaps = 27/264 (10%)

Query: 581  PSGEAHSNSSSNIAK-EDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 901  PAGERMSRPEAAVPGYQHPSEAINAHTPQFFIYKIDASNREQRLEDKGD---------TP 951

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
            + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 952  LELGEDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 1011

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPI 750
            E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+
Sbjct: 1012 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPV 1070

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFD 803
             + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FD
Sbjct: 1071 RNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFD 1130

Query: 804  DSHISPINEDDVKSAAAYVLFYRR 827
            DS ++ ++E  V +  AYVLFYRR
Sbjct: 1131 DSTVTTVDESQVVTRYAYVLFYRR 1154


>gi|432895001|ref|XP_004076037.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 32-like [Oryzias
           latipes]
          Length = 1581

 Score =  186 bits (471), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 155/498 (31%), Positives = 229/498 (45%), Gaps = 51/498 (10%)

Query: 34  ASKRPSGIDNSDLVNDATAEDP-----GAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGG 88
           A++RP  IDN  LV     + P     G   +    LL GRD+  +P+ VW  L+ WYG 
Sbjct: 517 AAQRPGAIDNQPLVTTEPMKAPTLTMEGGRLKRCLQLLPGRDFETVPEPVWRALYHWYGA 576

Query: 89  GPTLARKVI---SSGLSQTELAVEVYPLRLQLL-------------------------VM 120
             +L R VI    +GL++ EL    YP  L  L                          +
Sbjct: 577 NISLPRPVILETKTGLAELEL----YPRYLLFLRQQPATRSPQSNIWVNMGNVPSPNAPL 632

Query: 121 PRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANI 180
            R    T   S+  TI ++H        +  E + +W Y       L++D D TL++  I
Sbjct: 633 KRMLAYTGCFSRMATIKDIHLYLSQRLRIKEEDMRLWLYNSENYLTLLDDEDHTLENLKI 692

Query: 181 QMDQDILVEVLD-NVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSR 239
             +Q +++EV + +++     S I ++   ++    V  E   + LS  G       + +
Sbjct: 693 YDEQQLVIEVRNKDMSWPEEMSFIANSSKIDRH--KVPTEKGATGLSNLGNTCFMNSSIQ 750

Query: 240 NHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPE 299
             S+    +    S R       ++ +  RG      G L +     + S  Q  V  P 
Sbjct: 751 CVSNTKPLTDYFISGRHLYELNRTNPIGMRGHMAKCYGDLVME----LWSGTQKNV-APL 805

Query: 300 FARYFREDYRREINWQNPLGMVELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVAD 359
             R+    Y    N        ELLAFLLDGLHEDLNRV  KPY++ KD+DGRPD EVA 
Sbjct: 806 KLRWTIAKYAPRFNGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVELKDSDGRPDWEVAS 865

Query: 360 EYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTV 419
           E W NH+ RN SIIVD+  GQ KS + C  C  +S  FDPF +LSLPL   ++  + +TV
Sbjct: 866 EAWENHLRRNRSIIVDLFHGQLKSQVKCKTCGHISARFDPFNFLSLPLPMDSSMHLEITV 925

Query: 420 FTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF-LDDPL 478
              DGS  P  Y + +    +   L + L  +CSLK  E++ +AE+ + +I+ F  D+  
Sbjct: 926 IKLDGST-PVRYGLRLNMDEKYTGLKKQLSELCSLK-PEQILLAEVHSSNIKNFPQDNQK 983

Query: 479 ISLSTIKDDDHLAAYRVP 496
           + LS    +  L A+ VP
Sbjct: 984 VRLSV---NGFLCAFEVP 998



 Score = 96.3 bits (238), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 120/248 (48%), Gaps = 30/248 (12%)

Query: 528  YGTPLVSSI----SRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSG 583
            +G PL+       SR D+  +  IQ  V R+ SP   +E+  HA   D        D  G
Sbjct: 1097 FGMPLIVPCTVHTSRKDLYDAVWIQ--VSRLASPLPPQEASNHAQDCD--------DSMG 1146

Query: 584  EAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVY 643
              +  +   + K+  S +                  C   ++E  +     +S  +  + 
Sbjct: 1147 YQYPFTLRVVGKDGNSCA-----------WCPWYRFCRGCTIECSEDR---ASVGNAYIA 1192

Query: 644  VDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWY 702
            VDW    L  +Y T   E ++E   +   +++A+ EP+SL +CL+AF  EE L  ++++Y
Sbjct: 1193 VDWDPTALHLRYQTS-QERIVEEHCSVEQSRRAQAEPISLDSCLKAFTSEEELGEDELYY 1251

Query: 703  CPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANK 762
            C +CK  R A+KKLDLWRLP +L++HLKRF +      K +  V FP  +F+ + ++A +
Sbjct: 1252 CSKCKTHRLATKKLDLWRLPPILIVHLKRFQFVNGRWIKSQKIVKFPRENFDPSAFLAPR 1311

Query: 763  NSSRRQLY 770
            +  +  L+
Sbjct: 1312 DLEQHCLH 1319



 Score = 53.1 bits (126), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 3/60 (5%)

Query: 769  LYELYALTNHYGGMGSGHYTAHIKLLDENR-WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            +Y LYA++ H G MG GHY  + K  + NR WY ++DS    ++ +++ + +AY+LFY +
Sbjct: 1486 IYNLYAISCHSGIMGGGHYVTYAK--NPNRKWYCYNDSSCKEVHSEEIDTDSAYILFYEQ 1543


>gi|395749294|ref|XP_002827731.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 32-like, partial
           [Pongo abelii]
          Length = 1105

 Score =  186 bits (471), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 161/561 (28%), Positives = 236/561 (42%), Gaps = 151/561 (26%)

Query: 18  GDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDP-----GAGPEIVDTLLEGRDYI 72
           G   ++L H N       ++P  IDN  LV     +       G   +    L+  RDY 
Sbjct: 468 GANGNILLHLNP------QKPGAIDNQPLVTQEPVKATSLTLEGGRLKRTPQLIHRRDYE 521

Query: 73  LLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELA-VEVYPLRLQLLVM---PRGECSTI 128
           ++P+ VW  L+ WYG    L R VI +  S+T++  +E++P  L  L      R + S I
Sbjct: 522 MVPEPVWRALYHWYGANLALPRPVIKN--SKTDIPELELFPRYLLFLRQQPATRTQQSNI 579

Query: 129 RI----------------------SKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHA 166
            +                      S+ +TI E+H        +  E + +W Y       
Sbjct: 580 WVNMGNVPSPNAPLKRVLAYTGCFSRMQTIKEIHEYLSQRLRIKEEDMRLWLYNSENYLT 639

Query: 167 LMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLS 226
           L++             D+D  +E L           IQD          +++E     +S
Sbjct: 640 LLD-------------DEDHKLEYL----------KIQDE-------QHLVIEVRNKDMS 669

Query: 227 IAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCF 286
                S    +S+    ++ T                          G TGL NLGNTCF
Sbjct: 670 WPEEMSFIANSSKIDRHKVPTEK------------------------GATGLSNLGNTCF 705

Query: 287 MNSAIQCLVHTPEFARYF---REDYRREINWQNPLGMV---------------------- 321
           MNS+IQC+ +T    +YF   R  Y  E+N  NP+GM                       
Sbjct: 706 MNSSIQCVSNTQPLTQYFISGRHLY--ELNRTNPIGMKGHMAKCYGDLVQELWSGTQKNV 763

Query: 322 -------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEE 356
                                    ELLAFLLDGLHEDLNRV  KPY++ KD+DGRP+ E
Sbjct: 764 APLKLRWTIAKYAPRFNGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVELKDSDGRPNWE 823

Query: 357 VADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMT 416
           VA E W NH+ RN SI+VD+  GQ +S + C  C  +SV FDPF +LSLPL   +   + 
Sbjct: 824 VAAEAWDNHLRRNRSIVVDLFHGQLRSQVKCKTCGHISVRFDPFNFLSLPLPMDSYMHLE 883

Query: 417 VTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF-LD 475
           +TV   DG+  P  Y + +    +   L + L ++C L  SE++ +AE+   +I+ F  D
Sbjct: 884 ITVIRLDGTT-PVRYGLRLNMDEKYTGLKKQLSDLCGL-NSEQILLAEVHGSNIKNFPQD 941

Query: 476 DPLISLSTIKDDDHLAAYRVP 496
           +  + LS       L A+ +P
Sbjct: 942 NQKVRLSV---SGFLCAFEIP 959


>gi|148678491|gb|EDL10438.1| ubiquitin specific peptidase 43, isoform CRA_a [Mus musculus]
          Length = 1018

 Score =  186 bits (471), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 156/589 (26%), Positives = 266/589 (45%), Gaps = 95/589 (16%)

Query: 296 HTPEFARYFR---EDYRREINWQNPLGMVELLAFLLDGLHEDLNRVKH-------KPYIK 345
           +TP+ +  F+     Y  +    +    +E L +LLD +HEDL    H        P + 
Sbjct: 48  YTPQLSAEFKNAVSKYGSQFQGNSQHDALEFLLWLLDRVHEDLEGSAHGLVSEQLPPEVS 107

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
               D RP         A   +   S +    Q QY+S+L CP C K S TFDPF+ +SL
Sbjct: 108 KISEDLRPS--------AAPTSLGPSFVQSHFQAQYRSSLTCPHCLKQSNTFDPFLCVSL 159

Query: 406 PLQATTTRTMTVT-VFTSD-------GSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQS 457
           P+    TR ++VT VF S        G A+P   TV        R ++   G +     +
Sbjct: 160 PIPLRQTRFLSVTLVFPSKSQRFLRVGLAVPILSTVAA-----LRKMVAEEGGV----PA 210

Query: 458 EELKVAEIQNHSIQR-FLDDPLISLSTIKDDDHLAAYRVPK------LVKKAVFLQLIHR 510
           EE+ + E+  +  QR F D+    L+TI + D++ A++VP       L      L +  R
Sbjct: 211 EEVILVELYPNGFQRSFFDE--EDLNTIAEGDNVYAFQVPPSPGLGTLSAHPSGLSVSPR 268

Query: 511 LQEQEPGAAQTTSQWKAYGTPLVSS----ISRDDVISSGKIQSTVQRMLSPFLKKESLMH 566
           L  ++          + +  PL S         +++ SG+  S   R   PFL +E    
Sbjct: 269 LPVRDS---------QRFSGPLHSENRVVFLFCNLVGSGQQAS---RFGPPFLIREDRTI 316

Query: 567 ADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLV-----DESNVCF 621
           + +     +++ V           S ++ +D  +  ++ +  L L        D   +C 
Sbjct: 317 SWAQLQQCILSKV------RCLMRSEVSAQDLGTLFSIRVVGLSLACSYLSPKDNRPLC- 369

Query: 622 DLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEP-L 680
             +V+    +R P     + + V+W   + E+      E  ++   +    ++A  +P  
Sbjct: 370 HWAVDRALHLRRPGGPPHVKLAVEWDSSVTERLFGSLQEERVQDADSVWRQQQAHQQPSC 429

Query: 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKH 740
           +L  C +++ +EE L  +D W CP C+  +Q   KL LW LP++L+IHLKRF      ++
Sbjct: 430 TLDECFQSYTKEEQLAQDDAWKCPHCQVLQQGVVKLSLWTLPDILIIHLKRFCQVGERRN 489

Query: 741 KLETFVNFPIHDFNLTKYVANKNSSRRQ----------------------LYELYALTNH 778
           KL T V FP+   N+  +VA ++++ +                       LY+LYA+ NH
Sbjct: 490 KLSTLVKFPLSGLNMAPHVARRSTNSKAGPGPWSSWKQPICLPTTYPLDFLYDLYAVCNH 549

Query: 779 YGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           +G +  GHYTA+ +   + +WY++DDS +  + ED+V +  AY+LFY++
Sbjct: 550 HGSLQGGHYTAYCRNSLDGQWYSYDDSTVEALREDEVNTRGAYILFYQK 598


>gi|410979933|ref|XP_003996335.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 43 [Felis catus]
          Length = 943

 Score =  185 bits (470), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 153/581 (26%), Positives = 252/581 (43%), Gaps = 132/581 (22%)

Query: 321 VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIAR---NDSIIVDVC 377
           +E L +LLD +HEDL      P  +      +P+     E+  +  A+     S +    
Sbjct: 34  LEFLLWLLDRVHEDLEVSSRGPGSEKP----QPEASRTPEHLLSPSAQLPLGQSFVQSHF 89

Query: 378 QGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVT-VFTSD-------GSALPS 429
           Q QY+S+L CP C K S TFDPF+ +SLP+    TR ++VT VF S        G A+P 
Sbjct: 90  QAQYRSSLTCPHCLKQSNTFDPFLCVSLPIPLRQTRFLSVTLVFPSKSQRFLRVGLAVPI 149

Query: 430 TYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTIKDDD 488
             TV        R ++   G +     ++E+ + E+     QR F D+    L+TI + D
Sbjct: 150 LSTVAS-----LRKMVAEEGGV----PADEVILVELCPSGFQRSFFDE--EDLNTIAEGD 198

Query: 489 HLAAYRVPKLVKKAVF------LQLIHRL-----QEQEPGA-------------AQTTSQ 524
           ++ A+  P    + +       L +  RL     Q   P               A +  Q
Sbjct: 199 NVYAFHAPPPPGQEMLSAHPPGLSISPRLAAHGGQRLPPPVQSENKVLILLCNLAGSGQQ 258

Query: 525 WKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGE 584
              +G P +  I  D  IS  ++Q  +   +   +K E+ +     +P S+ +       
Sbjct: 259 ASRFGPPFL--IREDRAISWVQLQQCILSKVRYLMKSEAPLQ----NPGSLFS------- 305

Query: 585 AHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTI-----------RI 633
                                     +++V  S  C  LS +    +           R 
Sbjct: 306 --------------------------IRVVGLSLACSYLSPQDSHPLSHWAVDRALHPRR 339

Query: 634 PSSSTSIVVYVDWSQ----KLLEKYNTHFLENLLEVFKNGPVTKKARTEP-LSLYTCLEA 688
           P     + + V+W      +L        +++   V++     ++A  +P  +L  C + 
Sbjct: 340 PGGPPHVKLAVEWDSDAKGRLFGSPQEERVQDAESVWRQ----QEAHQQPSCTLDECFQF 395

Query: 689 FLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNF 748
           + +EE L  +D W CP CK  +Q + KL LW LP++L+IHLKRF      ++KL T V F
Sbjct: 396 YTKEEQLAQDDAWKCPHCKALQQGTVKLSLWTLPDILIIHLKRFCQVGERRNKLSTLVKF 455

Query: 749 PIHDFNLTKYVANKNSSRRQ----------------------LYELYALTNHYGGMGSGH 786
           P+   N+  +VA +N+  +                       LY+LYA+ NH+GG+  GH
Sbjct: 456 PLSGLNMAPHVAQRNAGPKPATGPWPSWEQPACLPASCPWDFLYDLYAVCNHHGGLQGGH 515

Query: 787 YTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           YTA+ +   + +WY+FDDS + P+ ED+V +  AY+LFY++
Sbjct: 516 YTAYCRNSLDGQWYSFDDSTVEPLPEDEVSTRGAYILFYQK 556


>gi|402860147|ref|XP_003894496.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19 isoform 2
           [Papio anubis]
          Length = 1372

 Score =  185 bits (470), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 115/292 (39%), Positives = 155/292 (53%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 586 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 645

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 646 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 705

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 706 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 765

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 766 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVRVK-PENLRLAE 823

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +  P+L K + V L++  R Q
Sbjct: 824 VIKNRFHRVFL--PSHSLDTVSPSDMLLCFELLSPELAKERVVVLEVQQRPQ 873



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 136/264 (51%), Gaps = 27/264 (10%)

Query: 581  PSGEAHSNSSSNIAK-EDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 1051 PAGERVSRPEAAVPGYQHPSEAMNAHTPQFFIYKIDSSNREQRLEDKGD---------TP 1101

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
            + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 1102 LELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 1161

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPI 750
            E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+
Sbjct: 1162 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPV 1220

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFD 803
             + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FD
Sbjct: 1221 RNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFD 1280

Query: 804  DSHISPINEDDVKSAAAYVLFYRR 827
            DS ++ ++E  V +  AYVLFYRR
Sbjct: 1281 DSTVTTVDESQVVTRYAYVLFYRR 1304


>gi|402860145|ref|XP_003894495.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19 isoform 1
           [Papio anubis]
          Length = 1384

 Score =  185 bits (470), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 115/292 (39%), Positives = 155/292 (53%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 598 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 657

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 658 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 717

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 718 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 777

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 778 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVRVK-PENLRLAE 835

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +  P+L K + V L++  R Q
Sbjct: 836 VIKNRFHRVFL--PSHSLDTVSPSDMLLCFELLSPELAKERVVVLEVQQRPQ 885



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 136/264 (51%), Gaps = 27/264 (10%)

Query: 581  PSGEAHSNSSSNIAK-EDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 1063 PAGERVSRPEAAVPGYQHPSEAMNAHTPQFFIYKIDSSNREQRLEDKGD---------TP 1113

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
            + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 1114 LELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 1173

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPI 750
            E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+
Sbjct: 1174 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPV 1232

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFD 803
             + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FD
Sbjct: 1233 RNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFD 1292

Query: 804  DSHISPINEDDVKSAAAYVLFYRR 827
            DS ++ ++E  V +  AYVLFYRR
Sbjct: 1293 DSTVTTVDESQVVTRYAYVLFYRR 1316


>gi|411147407|ref|NP_001258643.1| ubiquitin specific peptidase 19 [Sus scrofa]
          Length = 1341

 Score =  185 bits (470), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 155/292 (53%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 555 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 614

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 615 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 674

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 675 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 734

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V++ K +    +++  L     +K  E L++AE
Sbjct: 735 PL-PQKQKVLPVFYFAREPHSKPIKFLVSISKENSSASEVLDSLSQSVHVK-PENLRLAE 792

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +  P+L K + V L++  R Q
Sbjct: 793 VIKNRFHRVFL--PSHSLDTVSPSDTLLCFELLSPELAKERVVVLEVQQRPQ 842



 Score =  153 bits (387), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 94/264 (35%), Positives = 135/264 (51%), Gaps = 27/264 (10%)

Query: 581  PSGEAHSNSSSNIAK-EDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + +   +  S +     P   +  +D SN    L  +GD  + +      
Sbjct: 1020 PAGERVSRPEAAVPGYQHPSEAMNAHTPQFFIYKIDASNREQRLEDKGDNPLELGE---- 1075

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
                 D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 1076 -----DCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 1130

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPI 750
            E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+
Sbjct: 1131 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPV 1189

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFD 803
             + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FD
Sbjct: 1190 RNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFD 1249

Query: 804  DSHISPINEDDVKSAAAYVLFYRR 827
            DS ++ ++E  V +  AYVLFYRR
Sbjct: 1250 DSTVTTVDESQVVTRYAYVLFYRR 1273


>gi|344275832|ref|XP_003409715.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19-like [Loxodonta
           africana]
          Length = 1321

 Score =  185 bits (469), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 155/292 (53%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 535 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 594

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 595 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 654

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 655 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCTKVSITFDPFLYLPV 714

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + +  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 715 PL-PQKQKVLPIFYFAREPHSKPIKFLVSVSKENSSASEVLDSLSQSVHVK-PENLRLAE 772

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +  P+L K + V L++  R Q
Sbjct: 773 VIKNRFHRMFL--PSHSLDTVSPSDMLLCFELLSPELAKERVVVLEVQQRPQ 822



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 90/257 (35%), Positives = 138/257 (53%), Gaps = 13/257 (5%)

Query: 581  PSGEAHSNSSSNIAK-EDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + I   +  S + +   P   +  +D SN    L  +G+  + +    + 
Sbjct: 1000 PTGERVSRPEAAIPGYQHPSEAMSAHTPQFFIYKIDASNREQRLEDKGEAPLELGDDCSL 1059

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPED 699
             +V+ +   + L+++     + L      G   + AR    +L  CL  F R E L PE+
Sbjct: 1060 ALVWRN--NERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRPEVLAPEE 1117

Query: 700  MWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPIHDFNLTK 757
             WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+ + +L+K
Sbjct: 1118 AWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPVRNLDLSK 1176

Query: 758  YVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFDDSHISPI 810
            +   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FDDS ++ +
Sbjct: 1177 FCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFDDSTVTTV 1236

Query: 811  NEDDVKSAAAYVLFYRR 827
            +E  V +  AYVLFYRR
Sbjct: 1237 DESQVVTRYAYVLFYRR 1253


>gi|26350395|dbj|BAC38837.1| unnamed protein product [Mus musculus]
          Length = 1021

 Score =  185 bits (469), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 154/589 (26%), Positives = 265/589 (44%), Gaps = 95/589 (16%)

Query: 296 HTPEFARYFR---EDYRREINWQNPLGMVELLAFLLDGLHEDLNRVKH-------KPYIK 345
           +TP+ +  F+     Y  +    +    +E L +LLD +HEDL    H        P + 
Sbjct: 48  YTPQLSAEFKNAVSKYGSQFQGNSQHDALEFLLWLLDRVHEDLEGSAHGLVSEQLPPEVS 107

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
               D RP         A   +   S +    Q QY+S+L CP C K S TFDPF+ +SL
Sbjct: 108 KISEDLRPS--------AAPTSLGPSFVQSHFQAQYRSSLTCPHCLKQSNTFDPFLCVSL 159

Query: 406 PLQATTTRTMTVTV--------FTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQS 457
           P+    TR ++VT+        F   G A+P   TV        R ++   G +     +
Sbjct: 160 PIPLRQTRFLSVTLVFPSKSQRFLRVGLAVPILSTVAA-----LRKMVAEEGGV----PA 210

Query: 458 EELKVAEIQNHSIQR-FLDDPLISLSTIKDDDHLAAYRVPK------LVKKAVFLQLIHR 510
           EE+ + E+  +  QR F D+    L+TI + D++ A++VP       L      L +  R
Sbjct: 211 EEVILVELYPNGFQRSFFDEE--DLNTIAEGDNVYAFQVPPSPGLGTLSAHPSGLSVSPR 268

Query: 511 LQEQEPGAAQTTSQWKAYGTPLVSS----ISRDDVISSGKIQSTVQRMLSPFLKKESLMH 566
           L  ++          + +  PL S         +++ SG+  S   R   PFL +E    
Sbjct: 269 LPVRDS---------QRFSGPLHSENRVVFLFCNLVGSGQQAS---RFGPPFLIREDRTI 316

Query: 567 ADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLV-----DESNVCF 621
           + +     +++ V           S ++ +D  +  ++ +  L L        D   +C 
Sbjct: 317 SWAQLQQCILSKV------RCLMRSEVSAQDLGTLFSIRVVGLSLACSYLSPKDNRPLC- 369

Query: 622 DLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEP-L 680
             +V+    +R P     + + V+W   + E+      E  ++   +    ++A  +P  
Sbjct: 370 HWAVDRALHLRRPGGPPHVKLAVEWDSSVTERLFGSLQEERVQDADSVWRQQQAHQQPSC 429

Query: 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKH 740
           +L  C +++ +EE L  +D W CP C+  +Q   KL LW LP++L+IHLKRF      ++
Sbjct: 430 TLDECFQSYTKEEQLAQDDAWKCPHCQVLQQGVVKLSLWTLPDILIIHLKRFCQVGERRN 489

Query: 741 KLETFVNFPIHDFNLTKYVANKNSSRRQ----------------------LYELYALTNH 778
           KL T V FP+   N+  +VA ++++ +                       LY+LYA+ NH
Sbjct: 490 KLSTLVKFPLSGLNMAPHVARRSTNSKAGPGPWSSWKQPICLPTTYPLDFLYDLYAVCNH 549

Query: 779 YGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           +G +  GHYTA+ +   + +WY++DDS +  + ED+V +  AY+LFY++
Sbjct: 550 HGSLQGGHYTAYCRNSLDGQWYSYDDSTVEALREDEVNTRGAYILFYQK 598


>gi|355559647|gb|EHH16375.1| hypothetical protein EGK_11647 [Macaca mulatta]
          Length = 1419

 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/292 (39%), Positives = 155/292 (53%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 596 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 655

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 656 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 715

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 716 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 775

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 776 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVRVK-PENLRLAE 833

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +  P+L K + V L++  R Q
Sbjct: 834 VIKNRFHRVFL--PSHSLDTVSPSDMLLCFELLSPELAKERVVVLEVQQRPQ 883



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 136/264 (51%), Gaps = 27/264 (10%)

Query: 581  PSGEAHSNSSSNIAK-EDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 1061 PAGERVSRPEAAVPGYQHPSEAMNAHTPQFFIYKIDSSNREQRLEDKGD---------TP 1111

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
            + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 1112 LELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 1171

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPI 750
            E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+
Sbjct: 1172 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPV 1230

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFD 803
             + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FD
Sbjct: 1231 RNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFD 1290

Query: 804  DSHISPINEDDVKSAAAYVLFYRR 827
            DS ++ ++E  V +  AYVLFYRR
Sbjct: 1291 DSTVTTVDESQVVTRYAYVLFYRR 1314


>gi|355746704|gb|EHH51318.1| hypothetical protein EGM_10672 [Macaca fascicularis]
          Length = 1419

 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/292 (39%), Positives = 155/292 (53%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 596 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 655

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 656 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 715

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 716 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 775

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 776 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVRVK-PENLRLAE 833

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +  P+L K + V L++  R Q
Sbjct: 834 VIKNRFHRVFL--PSHSLDTVSPSDMLLCFELLSPELAKERVVVLEVQQRPQ 883



 Score =  154 bits (388), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 136/264 (51%), Gaps = 27/264 (10%)

Query: 581  PSGEAHSNSSSNI-AKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 1061 PAGERVSRPEAAVPGYQHRSEAMNAHTPQFFIYKIDSSNREQRLEDKGD---------TP 1111

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
            + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 1112 LELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 1171

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPI 750
            E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+
Sbjct: 1172 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPV 1230

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFD 803
             + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FD
Sbjct: 1231 RNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFD 1290

Query: 804  DSHISPINEDDVKSAAAYVLFYRR 827
            DS ++ ++E  V +  AYVLFYRR
Sbjct: 1291 DSTVTTVDESQVVTRYAYVLFYRR 1314


>gi|340374559|ref|XP_003385805.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4-like [Amphimedon
           queenslandica]
          Length = 588

 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 170/607 (28%), Positives = 259/607 (42%), Gaps = 128/607 (21%)

Query: 275 LTGLLNLGNTCFMNSAIQCLVHTPEFARYF-------REDYRREINWQNPLGMV------ 321
           L GL NLGNTCF+NS +QCL +T     YF        + Y++ IN  NPLG+       
Sbjct: 8   LCGLSNLGNTCFLNSVLQCLSNTEPLVEYFIGKEGKAEKPYKKHINRNNPLGLGGVIAES 67

Query: 322 -----------------------------------------ELLAFLLDGLHEDLNRVKH 340
                                                    +LL FLL+ LHEDLN +K 
Sbjct: 68  FGALLNDMWTGQNSYLIPRRLRNVIARHAPELFDSQQHDSHKLLDFLLNKLHEDLNLIKK 127

Query: 341 KPYIKSK-DADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDP 399
           +P I+     +GR D ++A E W  ++  N S+IV + QGQ KSTL CP C K S TFDP
Sbjct: 128 RPCIEMNIKTEGRDDNDIARESWLCYLQCNQSVIVRLFQGQLKSTLHCPKCEKESRTFDP 187

Query: 400 FMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEE 459
           FMYLSLP+    TR + V +  SD  A+   Y ++VPK G    + + L  +  +  S  
Sbjct: 188 FMYLSLPIPVQNTRDIKVFLIRSDPLAIMKKYCLSVPKDGNIFHMKEELQKMIDIDPS-N 246

Query: 460 LKVAEIQNHSIQR--FLDDPLISLSTIKDDDHLAAYRVP----KLVKKAVFLQLIHRLQE 513
           L V ++ +    R  +  DP+I +   +DD  +   R P      V   V+++ I R   
Sbjct: 247 LVVIDVYHSRFHRIYYDKDPIIHIMD-RDDIFIYELRRPLGDQNWVPIPVYMREIKRYTS 305

Query: 514 QEPGAAQ-TTSQWKAYGTPLVSSISRDDVISS---GKIQSTVQRM-LSPFLKKESLMHAD 568
               + +  T+  + +G P+V ++ R           I S + RM + P  +KE      
Sbjct: 306 ASYFSQKHMTTYGQVFGLPVVVTVPRIGCKYRSLYNVIMSQITRMVIKPEREKEEKNTGA 365

Query: 569 SFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGD 628
                 + T   P     SN+ S+ A E     K   L  L +     S     L  + D
Sbjct: 366 KKSNEIVETNTMP---IESNNDSDEAGE-LKRDKKCDLFRLVICNSYGSQEITRLE-DDD 420

Query: 629 KTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEA 688
           + I++   S+   +  DW  +  E +      N  E  ++  V KK   +P ++Y C+++
Sbjct: 421 EFIKL---SSQTYIGCDWEFEDKEAFYNVKEANAYEEHESYTVAKKPE-KPTTVYDCMDS 476

Query: 689 FLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNF 748
           F+ ++ L  ++ W             KLD                               
Sbjct: 477 FMHDKVLAEDESW-------------KLD------------------------------- 492

Query: 749 PIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHIS 808
                 L+ YV N     + LY+L+A++NHY G G GHYTA  K  D  +WY+FDD+++S
Sbjct: 493 ------LSDYVVNAEEP-QPLYDLFAVSNHYSGQGGGHYTASAKNKDSRKWYSFDDNNVS 545

Query: 809 PINEDDV 815
             + D +
Sbjct: 546 DASPDSI 552


>gi|402860149|ref|XP_003894497.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19 isoform 3
           [Papio anubis]
          Length = 1419

 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/292 (39%), Positives = 155/292 (53%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 596 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 655

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 656 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 715

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 716 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 775

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 776 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVRVK-PENLRLAE 833

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +  P+L K + V L++  R Q
Sbjct: 834 VIKNRFHRVFL--PSHSLDTVSPSDMLLCFELLSPELAKERVVVLEVQQRPQ 883



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 136/264 (51%), Gaps = 27/264 (10%)

Query: 581  PSGEAHSNSSSNIAK-EDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 1061 PAGERVSRPEAAVPGYQHPSEAMNAHTPQFFIYKIDSSNREQRLEDKGD---------TP 1111

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
            + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 1112 LELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 1171

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPI 750
            E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+
Sbjct: 1172 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPV 1230

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFD 803
             + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FD
Sbjct: 1231 RNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFD 1290

Query: 804  DSHISPINEDDVKSAAAYVLFYRR 827
            DS ++ ++E  V +  AYVLFYRR
Sbjct: 1291 DSTVTTVDESQVVTRYAYVLFYRR 1314


>gi|395856539|ref|XP_003800685.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19 [Otolemur
            garnettii]
          Length = 1504

 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/292 (39%), Positives = 155/292 (53%), Gaps = 57/292 (19%)

Query: 274  GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
            G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 718  GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 777

Query: 320  ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                                E +AFLLDGLHEDLNR+++KPY +
Sbjct: 778  RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 837

Query: 346  SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
            + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 838  TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 897

Query: 406  PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
            PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 898  PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSSASEVLDSLSQSVHVK-PENLRLAE 955

Query: 465  IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
            +  +   R FL  P  SL T+   D L  + +  P+L K + V L++  R Q
Sbjct: 956  VIKNRFHRVFL--PSHSLDTVSPSDTLLCFELLSPELAKERVVVLEVQQRPQ 1005



 Score =  152 bits (384), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 82/199 (41%), Positives = 113/199 (56%), Gaps = 17/199 (8%)

Query: 645  DWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLREEPLVP 697
            D S  L+ + N    E +L   K        G   + AR    +L  CL  F R E L P
Sbjct: 1239 DCSLALVWRNNERLPEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRPEVLAP 1298

Query: 698  EDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPIHDFNL 755
            E+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+ + +L
Sbjct: 1299 EEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPVRNLDL 1357

Query: 756  TKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFDDSHIS 808
            +K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FDDS ++
Sbjct: 1358 SKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFDDSTVT 1417

Query: 809  PINEDDVKSAAAYVLFYRR 827
             ++E  V +  AYVLFYRR
Sbjct: 1418 TVDESQVVTRYAYVLFYRR 1436


>gi|148678492|gb|EDL10439.1| ubiquitin specific peptidase 43, isoform CRA_b [Mus musculus]
          Length = 1032

 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 158/598 (26%), Positives = 268/598 (44%), Gaps = 104/598 (17%)

Query: 296 HTPEFARYFR---EDYRREINWQNPLGMVELLAFLLDGLHEDLNRVKH-------KPYIK 345
           +TP+ +  F+     Y  +    +    +E L +LLD +HEDL    H        P + 
Sbjct: 53  YTPQLSAEFKNAVSKYGSQFQGNSQHDALEFLLWLLDRVHEDLEGSAHGLVSEQLPPEVS 112

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
               D RP         A   +   S +    Q QY+S+L CP C K S TFDPF+ +SL
Sbjct: 113 KISEDLRPS--------AAPTSLGPSFVQSHFQAQYRSSLTCPHCLKQSNTFDPFLCVSL 164

Query: 406 PLQATTTRTMTVT-VFTSD-------GSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQS 457
           P+    TR ++VT VF S        G A+P   TV        R ++   G +     +
Sbjct: 165 PIPLRQTRFLSVTLVFPSKSQRFLRVGLAVPILSTVAA-----LRKMVAEEGGV----PA 215

Query: 458 EELKVAEIQNHSIQR-FLDDPLISLSTIKDDDHLAAYRVPK------LVKKAVFLQLIHR 510
           EE+ + E+  +  QR F D+    L+TI + D++ A++VP       L      L +  R
Sbjct: 216 EEVILVELYPNGFQRSFFDE--EDLNTIAEGDNVYAFQVPPSPGLGTLSAHPSGLSVSPR 273

Query: 511 L----QEQEPGAAQTTSQWKAYGTPLVSS---ISRDDVISSGKIQSTVQRMLSPFLKKES 563
           L     ++  G   + ++       LV S    SR+D+         + R   PFL +E 
Sbjct: 274 LPVRDSQRFSGPLHSENRVVFLFCNLVGSGQQASRNDLFP------WISRFGPPFLIRED 327

Query: 564 LMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDL 623
              + +     +++ V             + + + S+    TL    +++V  S  C  L
Sbjct: 328 RTISWAQLQQCILSKV-----------RCLMRSEVSAQDLGTL--FSIRVVGLSLACSYL 374

Query: 624 SVEGDKTI-----------RIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVT 672
           S + ++ +           R P     + + V+W   + E+      E  ++   +    
Sbjct: 375 SPKDNRPLCHWAVDRALHLRRPGGPPHVKLAVEWDSSVTERLFGSLQEERVQDADSVWRQ 434

Query: 673 KKARTEP-LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKR 731
           ++A  +P  +L  C +++ +EE L  +D W CP C+  +Q   KL LW LP++L+IHLKR
Sbjct: 435 QQAHQQPSCTLDECFQSYTKEEQLAQDDAWKCPHCQVLQQGVVKLSLWTLPDILIIHLKR 494

Query: 732 FSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQ----------------------L 769
           F      ++KL T V FP+   N+  +VA ++++ +                       L
Sbjct: 495 FCQVGERRNKLSTLVKFPLSGLNMAPHVARRSTNSKAGPGPWSSWKQPICLPTTYPLDFL 554

Query: 770 YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           Y+LYA+ NH+G +  GHYTA+ +   + +WY++DDS +  + ED+V +  AY+LFY++
Sbjct: 555 YDLYAVCNHHGSLQGGHYTAYCRNSLDGQWYSYDDSTVEALREDEVNTRGAYILFYQK 612


>gi|19076030|ref|NP_588530.1| CSN-associated deubiquitinating enzyme Ubp12 [Schizosaccharomyces
           pombe 972h-]
 gi|25167323|sp|O60079.1|UBP12_SCHPO RecName: Full=Probable ubiquitin carboxyl-terminal hydrolase 12;
           AltName: Full=Deubiquitinating enzyme 12; AltName:
           Full=Ubiquitin thioesterase 12; AltName:
           Full=Ubiquitin-specific-processing protease 12
 gi|3184060|emb|CAA19303.1| CSN-associated deubiquitinating enzyme Ubp12 [Schizosaccharomyces
           pombe]
          Length = 979

 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 168/601 (27%), Positives = 251/601 (41%), Gaps = 105/601 (17%)

Query: 38  PSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYG-GGPTLARKV 96
           P  +D  D+   A  E     P+    L E  D+ ++ ++VW+ L  WYG  GP   R+ 
Sbjct: 99  PGPVDQEDI---ADLETGTLKPD----LQEEIDFTIISRDVWDLLVRWYGLKGPEFPRET 151

Query: 97  ISSGL-SQTELAVEVYPLRLQLLVMPRGECST--------IRISKKETIGELHRRACSIF 147
           ++ G  S   L VEVYP    L ++               I +S K T+ +L        
Sbjct: 152 VNLGSESHPHLVVEVYPPIFSLTLLSTNAVDANESHKPKKISLSSKSTLEDLLEGVKYTL 211

Query: 148 YLNLEQICIWDYYGHRKHALMNDMDRTLDDAN-IQMDQDILVEVLDNVNGTNCKSSIQDN 206
            L  +Q  +W      +      + RT+D ++ I+++     E++D              
Sbjct: 212 SLPSDQFRLW------RVDTDQPLHRTIDPSSFIKINSK---EIID-------------- 248

Query: 207 GFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGV 266
            F EK  S  LVE     L +    S       N +  +  +  L       N   S+  
Sbjct: 249 -FLEK--SKTLVE-----LGMDSSCSLVAECMINETWPVDRALRLQFLIQQRNNQSSNEE 300

Query: 267 TTRGASV-GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM---- 320
             +   V G  GL NLGNTC+MNSA+QCL HT E   +F  D ++ ++N  NPLGM    
Sbjct: 301 QKQEKRVPGTCGLSNLGNTCYMNSALQCLTHTRELRDFFTSDEWKNQVNESNPLGMGGQV 360

Query: 321 -------------------------------------------VELLAFLLDGLHEDLNR 337
                                                       E LAFLLDGLHEDLNR
Sbjct: 361 ASIFASLIKSLYSPEHSSFAPRQFKATIGKFNHSFLGYGQQDSQEFLAFLLDGLHEDLNR 420

Query: 338 VKHKPYIKSKD---ADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVS 394
           +  KPY    D    D    +  A+E W  H  RNDS+IVD+ QG Y+STLVCPVCN VS
Sbjct: 421 IYQKPYTSKPDLYEVDEEKIKNTAEECWRLHKLRNDSLIVDLFQGMYRSTLVCPVCNTVS 480

Query: 395 VTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVP-KHGRCRDLIQVLGNICS 453
           +TFDPFM L+LPL      + TVT   +D +  P    V +  K     DL++ +     
Sbjct: 481 ITFDPFMDLTLPLPVKQVWSHTVTFIPADTNLTPLAIEVVLESKAATIEDLVKYVAEKSG 540

Query: 454 LKQSEELKVAEIQNHSIQRFLDDPLIS-LSTIKDDDHLAAYRVPKLVKKAV--FLQLIHR 510
                ++ V E       RFL     S L  I ++D +  Y + +  +      L  ++ 
Sbjct: 541 CSDYRKILVTETYKGRFYRFLTQLSKSLLMEISEEDEIYLYELERPYEDGSDDILVPVYH 600

Query: 511 LQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSF 570
           + +    +A +    + +G P V  +S ++V  +  I   ++     F   ++L + DS 
Sbjct: 601 ISDDSTNSANSYMSSRDFGHPFVLQLSDNEVTDASFISEKLKLKYQQFTTLKNLKNIDSL 660

Query: 571 D 571
           +
Sbjct: 661 E 661



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 98/268 (36%), Positives = 149/268 (55%), Gaps = 21/268 (7%)

Query: 571 DPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFD------LS 624
           D   + +TVDP  +AHS     I +ED S  K V   + P       N          L 
Sbjct: 719 DKKDLESTVDPL-DAHS-----IEEEDDSEFKDVAPGSYPEPSKSNENTKLTAKENDRLL 772

Query: 625 VEGDKTI-RIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLY 683
           ++GD  +   P  S   V  V  S   + +  + +LE+   +      ++ +RT  ++L 
Sbjct: 773 IQGDLLVCEWPEKSYQFVFSVAPSSPQMGR--SLWLESKTILSDKKDDSEDSRT--ITLN 828

Query: 684 TCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLE 743
            CL+ F + E L  ED WYCP CKE RQASK++++WR PE+L+ HLKRFS  R  + K++
Sbjct: 829 DCLDEFEKTEQLGEEDPWYCPTCKEFRQASKQMEIWRCPEILIFHLKRFSSERRFRDKID 888

Query: 744 TFVNFPIHDFNLT----KYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRW 799
             V FPI + +++     Y  ++  + + +YELYA+ NHYGG+G GHYTA  K  D  ++
Sbjct: 889 DLVEFPIDNLDMSMRTGSYKLSEKENPKLIYELYAVDNHYGGLGGGHYTAFAKNPDNGQF 948

Query: 800 YNFDDSHISPINEDDVKSAAAYVLFYRR 827
           Y FDDS ++P+  ++  ++AAY+LFYRR
Sbjct: 949 YCFDDSRVTPVCPEETVTSAAYLLFYRR 976


>gi|345787444|ref|XP_533832.3| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19 isoform 1
           [Canis lupus familiaris]
          Length = 1222

 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 155/292 (53%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 436 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFETEINYNNPLGTGGRLAIGFAVLL 495

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 496 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 555

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 556 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 615

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V++ K +    +++  L     +K  E L++AE
Sbjct: 616 PL-PQKQKVLPVFYFAREPHSKPIKFLVSISKENSSASEVLDSLSQSVHVK-PENLRLAE 673

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +  P+L K + V L++  R Q
Sbjct: 674 VIKNRFHRVFL--PSHSLDTVSPSDTLLCFELLSPELAKERVVVLEVQQRPQ 723



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 136/264 (51%), Gaps = 27/264 (10%)

Query: 581  PSGEAHSNSSSNIAK-EDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 901  PAGERVSRPEAAVPGYQHPSEAMNSHTPQFFIYKIDASNREQRLEDKGD---------TP 951

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
            + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 952  LELGEDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 1011

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPI 750
            E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+
Sbjct: 1012 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPV 1070

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFD 803
             + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FD
Sbjct: 1071 RNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFD 1130

Query: 804  DSHISPINEDDVKSAAAYVLFYRR 827
            DS ++ ++E  V +  AYVLFYRR
Sbjct: 1131 DSTVTTVDESQVVTRYAYVLFYRR 1154


>gi|296474940|tpg|DAA17055.1| TPA: ubiquitin specific peptidase 19 [Bos taurus]
          Length = 1238

 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/292 (39%), Positives = 155/292 (53%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 452 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 511

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 512 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 571

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 572 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 631

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 632 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSSASEVLDSLSQSVHVK-PENLRLAE 689

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +  P+L K + V L++  R Q
Sbjct: 690 VIKNRFHRVFL--PSHSLDTVSPSDTLLCFELLSPELAKERVVVLEVQQRPQ 739



 Score =  151 bits (381), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 75/168 (44%), Positives = 102/168 (60%), Gaps = 10/168 (5%)

Query: 669  GPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIH 728
            G   + AR    +L  CL  F R E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ 
Sbjct: 1004 GSAGEAARAGHFTLDQCLNLFTRPEVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQ 1063

Query: 729  LKRFSYSRSM--KHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGH 786
            LKRFS+ RS   + K+   V FP+ + +L K+   +   +   Y+LYA+ NHYGGM  GH
Sbjct: 1064 LKRFSF-RSFIWRDKINDLVEFPVRNLDLGKFCIGQKEEQLPSYDLYAVINHYGGMIGGH 1122

Query: 787  YTAHIKLLDENR-------WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            YTA  +L ++         W  FDDS ++ ++E  V +  AYVLFYRR
Sbjct: 1123 YTACARLPNDRSSQRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRR 1170


>gi|5360127|gb|AAD42882.1|AF155116_1 NY-REN-60 antigen [Homo sapiens]
          Length = 828

 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 151/509 (29%), Positives = 219/509 (43%), Gaps = 140/509 (27%)

Query: 65  LLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELA-VEVYPLRLQLLV---- 119
           L+ GRDY ++P+ VW  L+ WYG    L R VI +  S+T++  +E++P  L  L     
Sbjct: 18  LIHGRDYEMVPEPVWRALYHWYGANLALPRPVIKN--SKTDIPELELFPRYLLFLRQQPA 75

Query: 120 --------------MPRGECSTIRI-------SKKETIGELHRRACSIFYLNLEQICIWD 158
                         +P       R+       S+ +TI E+H        +  E + +W 
Sbjct: 76  TRTQQSNIWVNMGNVPSPNAPLKRVLAYTGCFSRMQTIKEIHEYLSQRLRIKEEDMRLWL 135

Query: 159 YYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLV 218
           Y       L++             D+D  +E L           IQD          +++
Sbjct: 136 YNSENYLTLLD-------------DEDHKLEYL----------KIQDE-------QHLVI 165

Query: 219 EPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGL 278
           E     +S     S    +S+    ++ T                          G TGL
Sbjct: 166 EVRNKDMSWPEEMSFIANSSKIDRHKVPTEK------------------------GATGL 201

Query: 279 LNLGNTCFMNSAIQCLVHTPEFARYF---REDYRREINWQNPLGMV-------------- 321
            NLGNTCFMNS+IQC+ +T    +YF   R  Y  E+N  NP+GM               
Sbjct: 202 SNLGNTCFMNSSIQCVSNTQPLTQYFISGRHLY--ELNRTNPIGMKGHMAKCYGDLVQEL 259

Query: 322 ---------------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKD 348
                                            ELLAFLLDGLHEDLNRV  KPY++ KD
Sbjct: 260 WSGTQKNVAPLKLRWTIAKYAPRFNGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVELKD 319

Query: 349 ADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQ 408
           +DGRPD EVA E W NH+ RN SI+VD+  GQ +S + C  C  +SV FDPF +LSLPL 
Sbjct: 320 SDGRPDWEVAAEAWDNHLRRNRSIVVDLFHGQLRSQVKCKTCGHISVRFDPFNFLSLPLP 379

Query: 409 ATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNH 468
             +   + +TV   DG+  P  Y + +    +   L + L ++C L  SE++ +AE+   
Sbjct: 380 MDSYMHLEITVIKLDGTT-PVRYGLRLNMDEKYTGLKKQLSDLCGL-NSEQILLAEVHGS 437

Query: 469 SIQRF-LDDPLISLSTIKDDDHLAAYRVP 496
           +I+ F  D+  + LS       L A+ +P
Sbjct: 438 NIKNFPQDNQKVRLSV---SGFLCAFEIP 463



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 74/125 (59%), Gaps = 2/125 (1%)

Query: 642 VYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
           + VDW    L  +Y T   E +++  ++   +++A+ EP++L +CL AF  EE L   +M
Sbjct: 660 IAVDWDPTALHLRYQTS-QERVVDEHESVEQSRRAQAEPINLDSCLRAFTSEEELGENEM 718

Query: 701 WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
           +YC +CK    A+KKLDLWRLP +L+IHLKRF +      K +  V FP   F+ + ++ 
Sbjct: 719 YYCSKCKTHCLATKKLDLWRLPPILIIHLKRFQFVNGRWIKSQKIVKFPRESFDPSAFLV 778

Query: 761 NKNSS 765
            ++ +
Sbjct: 779 PRDPA 783


>gi|417413803|gb|JAA53213.1| Putative ubiquitin carboxyl-terminal hydrolase 19, partial
           [Desmodus rotundus]
          Length = 1377

 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 155/292 (53%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 591 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFETEINYNNPLGTGGRLAIGFAVLL 650

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 651 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 710

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 711 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 770

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + +  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 771 PL-PQKQKVLPIFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVHVK-PENLRLAE 828

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +  P+L K + V L++  R Q
Sbjct: 829 VIKNRFHRVFL--PSHSLDTVSPSDTLLCFELLSPELAKERVVVLEVQQRPQ 878



 Score =  152 bits (385), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 135/264 (51%), Gaps = 27/264 (10%)

Query: 581  PSGEAHSNSSSNIAK-EDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 1056 PAGERVSRPEAAVPGYQHPSEAMNSHTPQFFIYKIDASNREQRLEDKGD---------TP 1106

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
            + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 1107 LELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 1166

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPI 750
            E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+
Sbjct: 1167 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPV 1225

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFD 803
             + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L  +         W  FD
Sbjct: 1226 RNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPSDRSSQRSDVGWRLFD 1285

Query: 804  DSHISPINEDDVKSAAAYVLFYRR 827
            DS ++ ++E  V +  AYVLFYRR
Sbjct: 1286 DSTVTTVDESQVVTRYAYVLFYRR 1309


>gi|297272741|ref|XP_002808172.1| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal
           hydrolase 32-like [Macaca mulatta]
          Length = 1535

 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 152/509 (29%), Positives = 221/509 (43%), Gaps = 140/509 (27%)

Query: 65  LLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELA-VEVYP---LRLQLLVM 120
           L+ GRDY ++P+ VW  L+ WYG    L R VI +  S+T++  +E++P   L L+    
Sbjct: 485 LIHGRDYEMVPEPVWRALYHWYGANLALPRPVIKN--SKTDIPELELFPRYLLFLRQQPA 542

Query: 121 PRGECSTIRI----------------------SKKETIGELHRRACSIFYLNLEQICIWD 158
            R + S I +                      S+ +TI E+H        +  E + +W 
Sbjct: 543 TRTQQSNIWVNMGNVPSPNAPLKRVLAYTGCFSRMQTIKEIHEYLSQRLRIKEEDMRLWL 602

Query: 159 YYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLV 218
           Y       L++             D+D  +E L           IQD          +++
Sbjct: 603 YNSENYLTLLD-------------DEDHRLEYL----------KIQDE-------QHLVI 632

Query: 219 EPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGL 278
           E     +S     S    +S+    ++ T                          G TGL
Sbjct: 633 EVRNKDMSWPEEMSFIANSSKIDRHKVPTEK------------------------GATGL 668

Query: 279 LNLGNTCFMNSAIQCLVHTPEFARYF---REDYRREINWQNPLGMV-------------- 321
            NLGNTCFMNS+IQC+ +T    +YF   R  Y  E+N  NP+GM               
Sbjct: 669 SNLGNTCFMNSSIQCVSNTQPLTQYFISGRHLY--ELNRTNPIGMKGHMAKCYGDLVQEL 726

Query: 322 ---------------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKD 348
                                            ELLAFLLDGLHEDLNRV  KPY++ KD
Sbjct: 727 WSGTQKNVAPLKLRWTIAKYAPRFNGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVELKD 786

Query: 349 ADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQ 408
           +DGRPD EVA E W NH+ RN SI+VD+  GQ +S + C  C  +SV FDPF +LSLPL 
Sbjct: 787 SDGRPDWEVAAEAWDNHLRRNRSIVVDLFHGQLRSQVKCKTCGHISVRFDPFNFLSLPLP 846

Query: 409 ATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNH 468
             +   + +TV   DG+  P  Y + +    +   L + L ++C L  SE++ +AE+   
Sbjct: 847 MDSYMHLEITVIKLDGTT-PVRYGLRLNMDEKYTGLKKQLSDLCGL-NSEQILLAEVHGS 904

Query: 469 SIQRF-LDDPLISLSTIKDDDHLAAYRVP 496
           +I+ F  D+  + LS       L A+ +P
Sbjct: 905 NIKNFPQDNQKVRLSV---SGFLCAFEIP 930



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 74/125 (59%), Gaps = 2/125 (1%)

Query: 642  VYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
            + VDW    L  +Y T   E +++  ++   +++A+ EP++L +CL AF  EE L   +M
Sbjct: 1126 IAVDWDPTALHLRYQTS-QERVVDEHESVEQSRRAQAEPINLDSCLRAFTSEEELGENEM 1184

Query: 701  WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
            +YC +CK    A+KKLDLWRLP +L+IHLKRF +      K +  V FP   F+ + ++ 
Sbjct: 1185 YYCSKCKTHCLATKKLDLWRLPPILIIHLKRFQFVNGRWIKSQKIVKFPRESFDPSAFLV 1244

Query: 761  NKNSS 765
             ++ +
Sbjct: 1245 PRDPA 1249



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 40/62 (64%), Gaps = 3/62 (4%)

Query: 767  RQLYELYALTNHYGGMGSGHYTAHIKLLDEN-RWYNFDDSHISPINEDDVKSAAAYVLFY 825
            + +Y LYA++ H G +G GHY  + K  + N +WY ++DS    ++ D++ + +AY+LFY
Sbjct: 1438 KPIYNLYAISCHSGILGGGHYVTYAK--NPNCKWYCYNDSSCKELHPDEIDTDSAYILFY 1495

Query: 826  RR 827
             +
Sbjct: 1496 EQ 1497


>gi|426249944|ref|XP_004018706.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19 [Ovis aries]
          Length = 1269

 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/292 (39%), Positives = 155/292 (53%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 485 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 544

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 545 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 604

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 605 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 664

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 665 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSSASEVLDSLSQSVHVK-PENLRLAE 722

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +  P+L K + V L++  R Q
Sbjct: 723 VIKNRFHRVFL--PSHSLDTVSPSDTLLCFELLSPELAKERVVVLEVQQRPQ 772



 Score =  125 bits (314), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 59/123 (47%), Positives = 78/123 (63%), Gaps = 3/123 (2%)

Query: 669  GPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIH 728
            G   + AR    +L  CL  F R E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ 
Sbjct: 1043 GSAGEAARAGHFTLDQCLNLFTRPEVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQ 1102

Query: 729  LKRFSYSRSM--KHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGH 786
            LKRFS+ RS   + K+   V FP+ + +L K+   +   +   Y+LYA+ NHYGGM  GH
Sbjct: 1103 LKRFSF-RSFIWRDKINDLVEFPVRNLDLGKFCIGQKEEQLPSYDLYAVINHYGGMIGGH 1161

Query: 787  YTA 789
            YTA
Sbjct: 1162 YTA 1164


>gi|402860151|ref|XP_003894498.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19 isoform 4
           [Papio anubis]
          Length = 1318

 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/292 (39%), Positives = 155/292 (53%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 495 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 554

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 555 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 614

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 615 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 674

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 675 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVRVK-PENLRLAE 732

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +  P+L K + V L++  R Q
Sbjct: 733 VIKNRFHRVFL--PSHSLDTVSPSDMLLCFELLSPELAKERVVVLEVQQRPQ 782



 Score =  154 bits (388), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 136/264 (51%), Gaps = 27/264 (10%)

Query: 581  PSGEAHSNSSSNI-AKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 960  PAGERVSRPEAAVPGYQHPSEAMNAHTPQFFIYKIDSSNREQRLEDKGD---------TP 1010

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
            + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 1011 LELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 1070

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPI 750
            E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+
Sbjct: 1071 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPV 1129

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFD 803
             + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FD
Sbjct: 1130 RNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFD 1189

Query: 804  DSHISPINEDDVKSAAAYVLFYRR 827
            DS ++ ++E  V +  AYVLFYRR
Sbjct: 1190 DSTVTTVDESQVVTRYAYVLFYRR 1213


>gi|345320897|ref|XP_003430360.1| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal
           hydrolase 19-like [Ornithorhynchus anatinus]
          Length = 1385

 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 152/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   YF +  +  EIN+ NPLG             
Sbjct: 542 GFTGLVNLGNTCFMNSVIQSLSNTRELRDYFHDRSFEMEINYSNPLGTGGRLAIGFAGLL 601

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 602 RTLWKGTHHAFQPSKLKAIVAGKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 661

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS +VD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 662 TVDSDGRPDEVVAEEAWQRHKMRNDSFVVDLFQGQYKSKLVCPVCTKVSITFDPFLYLPV 721

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +    P  + V++ K +    +++  L +   +K  E L++AE
Sbjct: 722 PL-PQKQKVLIVYYFAKEPHKKPVKFLVSISKENSSAMEVLDSLAHSVHVK-PENLRLAE 779

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL  I   D L  + V    L K + + LQ+  R Q
Sbjct: 780 VSKNRFHRIFL--PSHSLDAISPSDPLLCFEVLSSDLAKERVIVLQVQQRPQ 829



 Score =  152 bits (383), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 77/169 (45%), Positives = 108/169 (63%), Gaps = 11/169 (6%)

Query: 669  GPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIH 728
            G  ++ AR    +L  CL  F + E L PE+ WYCP+CK+ R+ASK+L LWRLP VL+I 
Sbjct: 1111 GSASEAARAGHFTLEQCLNLFTKPEVLAPEEAWYCPKCKQHREASKQLMLWRLPNVLIIQ 1170

Query: 729  LKRFSYSRSM--KHKLETFVNFPIHDFNLTKY-VANKNSSRRQLYELYALTNHYGGMGSG 785
            LKRFS+ RS   + K+   V FP+ + +L+K+ +  K+  +   Y+LYA+ NHYGGM  G
Sbjct: 1171 LKRFSF-RSFIWRDKINDMVEFPVRNLDLSKFCIGQKDDHQLPTYDLYAVINHYGGMIGG 1229

Query: 786  HYTAHIKLL-DENR------WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            HYTA+ +L  D+N       W  FDDS ++ ++E  V +  AYVLFYRR
Sbjct: 1230 HYTAYARLPSDKNSQRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRR 1278


>gi|440893719|gb|ELR46389.1| Ubiquitin carboxyl-terminal hydrolase 19 [Bos grunniens mutus]
          Length = 1419

 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/292 (39%), Positives = 155/292 (53%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 592 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 651

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 652 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 711

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 712 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 771

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 772 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSSASEVLDSLSQSVHVK-PENLRLAE 829

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +  P+L K + V L++  R Q
Sbjct: 830 VIKNRFHRVFL--PSHSLDTVSPSDTLLCFELLSPELAKERVVVLEVQQRPQ 879



 Score =  149 bits (376), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 75/172 (43%), Positives = 101/172 (58%), Gaps = 14/172 (8%)

Query: 669  GPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIH 728
            G   + AR    +L  CL  F R E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ 
Sbjct: 1144 GSAGEAARAGHFTLDQCLNLFTRPEVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQ 1203

Query: 729  LKRFSYSRSM--KHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGH 786
            LKRFS+ RS   + K+   V FP+ + +L K+   +   +   Y+LYA+ NHYGGM  GH
Sbjct: 1204 LKRFSF-RSFIWRDKINDLVEFPVRNLDLGKFCIGQKEEQLPSYDLYAVINHYGGMIGGH 1262

Query: 787  YTAHIKLLDENR-----------WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            YTA  +  +  R           W  FDDS ++ ++E  V +  AYVLFYRR
Sbjct: 1263 YTASARPPNHRRPCSHSPRFAVGWRLFDDSTVTTVDESQVVTRYAYVLFYRR 1314


>gi|387541264|gb|AFJ71259.1| ubiquitin carboxyl-terminal hydrolase 19 isoform 4 [Macaca mulatta]
          Length = 1318

 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/292 (39%), Positives = 155/292 (53%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 495 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 554

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 555 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 614

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 615 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 674

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 675 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVRVK-PENLRLAE 732

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +  P+L K + V L++  R Q
Sbjct: 733 VIKNRFHRVFL--PSHSLDTVSPSDMLLCFELLSPELAKERVVVLEVQQRPQ 782



 Score =  154 bits (388), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 136/264 (51%), Gaps = 27/264 (10%)

Query: 581  PSGEAHSNSSSNI-AKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 960  PAGERVSRPEAAVPGYQHPSEAMNAHTPQFFIYKIDSSNREQRLEDKGD---------TP 1010

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
            + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 1011 LELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 1070

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPI 750
            E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+
Sbjct: 1071 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPV 1129

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFD 803
             + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FD
Sbjct: 1130 RNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFD 1189

Query: 804  DSHISPINEDDVKSAAAYVLFYRR 827
            DS ++ ++E  V +  AYVLFYRR
Sbjct: 1190 DSTVTTVDESQVVTRYAYVLFYRR 1213


>gi|359078367|ref|XP_002697125.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19 [Bos taurus]
          Length = 1469

 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/292 (39%), Positives = 155/292 (53%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 683 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 742

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 743 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 802

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 803 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 862

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 863 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSSASEVLDSLSQSVHVK-PENLRLAE 920

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +  P+L K + V L++  R Q
Sbjct: 921 VIKNRFHRVFL--PSHSLDTVSPSDTLLCFELLSPELAKERVVVLEVQQRPQ 970



 Score =  151 bits (381), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/199 (41%), Positives = 112/199 (56%), Gaps = 17/199 (8%)

Query: 645  DWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLREEPLVP 697
            D S  L+ + N    E +L   K        G   + AR    +L  CL  F R E L P
Sbjct: 1204 DCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRPEVLAP 1263

Query: 698  EDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPIHDFNL 755
            E+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+ + +L
Sbjct: 1264 EEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPVRNLDL 1322

Query: 756  TKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFDDSHIS 808
             K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FDDS ++
Sbjct: 1323 GKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFDDSTVT 1382

Query: 809  PINEDDVKSAAAYVLFYRR 827
             ++E  V +  AYVLFYRR
Sbjct: 1383 TVDESQVVTRYAYVLFYRR 1401


>gi|358418211|ref|XP_592460.4| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19 [Bos taurus]
          Length = 1467

 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/292 (39%), Positives = 155/292 (53%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 681 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 740

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 741 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 800

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 801 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 860

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 861 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSSASEVLDSLSQSVHVK-PENLRLAE 918

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +  P+L K + V L++  R Q
Sbjct: 919 VIKNRFHRVFL--PSHSLDTVSPSDTLLCFELLSPELAKERVVVLEVQQRPQ 968



 Score =  151 bits (381), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/199 (41%), Positives = 112/199 (56%), Gaps = 17/199 (8%)

Query: 645  DWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLREEPLVP 697
            D S  L+ + N    E +L   K        G   + AR    +L  CL  F R E L P
Sbjct: 1202 DCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRPEVLAP 1261

Query: 698  EDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPIHDFNL 755
            E+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+ + +L
Sbjct: 1262 EEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPVRNLDL 1320

Query: 756  TKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFDDSHIS 808
             K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FDDS ++
Sbjct: 1321 GKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFDDSTVT 1380

Query: 809  PINEDDVKSAAAYVLFYRR 827
             ++E  V +  AYVLFYRR
Sbjct: 1381 TVDESQVVTRYAYVLFYRR 1399


>gi|256072742|ref|XP_002572693.1| ubiquitin-specific peptidase 4 (C19 family) [Schistosoma mansoni]
          Length = 945

 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 144/482 (29%), Positives = 208/482 (43%), Gaps = 131/482 (27%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           WW  W ++V+    +   D +S             + P  +DNSD++ D          +
Sbjct: 67  WWTKWEEFVDSVSKSGIVDETS------------EEYPGKVDNSDILYDG---------K 105

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYGGGPT----LARKVISSGLSQTELAVEVYPLRLQ 116
           + + LL   D  L+P+ VW     +YG   T      R+ I +  S     +E+YP    
Sbjct: 106 LKENLLLESDITLIPRNVWKLFVDFYGCTHTDISVFERRAIQAPKSA---EIEIYPPHYS 162

Query: 117 LLVMPRGECSTIRIS----KKETIGEL------HRRACSIFYLNLEQICIWDYYGHRKHA 166
             + P    +T+       K +TI EL      H +A     ++L       +    +  
Sbjct: 163 FYLNPSNSSATLLFEGTYCKFQTIRELKAIVAQHLKAAPGVNVHLSI-----HNEQNEFE 217

Query: 167 LMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLS 226
            + D D T+++ N++ ++ I V+ L+  NG   +S I  N    K   S+  +P    LS
Sbjct: 218 ELEDEDATIEETNLEREKVIFVQ-LEPRNGI--RSDISVNSSRLKSNDSIGSQPESQMLS 274

Query: 227 IAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCF 286
           + G                 + P L                      G+ GL NLGNTCF
Sbjct: 275 LHG-----------------SGPPLVP--------------------GVCGLNNLGNTCF 297

Query: 287 MNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG-------------------------- 319
           MNSA+QC+ + P    YF    ++ E+N +NPLG                          
Sbjct: 298 MNSALQCMSNVPALTSYFLSGKWKSELNIRNPLGSQGRIATAYADLIKQLWSGTRAYAVP 357

Query: 320 ---------------------MVELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVA 358
                                  ELL FLLDGLHEDLNR+  KPYI+ KD+DGRPD EVA
Sbjct: 358 REFKIEIARIARQFSGYAQHDTHELLVFLLDGLHEDLNRIHSKPYIEVKDSDGRPDIEVA 417

Query: 359 DEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVT 418
           +E W  + +RNDSIIVD+  GQ KST++CP C + SVTFDPF  L LP+Q     T+ V 
Sbjct: 418 NEAWEYYKSRNDSIIVDLFHGQLKSTVICPTCQRKSVTFDPFASLILPIQEVYKYTVRVY 477

Query: 419 VF 420
           V+
Sbjct: 478 VW 479



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 68/158 (43%), Positives = 90/158 (56%), Gaps = 2/158 (1%)

Query: 670 PVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHL 729
           PVT+    E L L  C E F   E L   D+WYC +CK  + A+KK DLW+LP+VLV+ L
Sbjct: 722 PVTR--LNETLKLSDCFERFTDIEQLGSRDLWYCSRCKAEKPATKKFDLWKLPDVLVVQL 779

Query: 730 KRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTA 789
           KRF        K++T + FP+   NLT  V  K    + +Y+L A++NH G +G GHYTA
Sbjct: 780 KRFRSHLRFHDKIDTLLEFPLTGLNLTSRVLEKKPDEKFIYDLVAVSNHMGYLGGGHYTA 839

Query: 790 HIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
                  NRWY FDDS     +   + ++AAYVL Y R
Sbjct: 840 FALNAHTNRWYFFDDSSTRECDPSKIVTSAAYVLVYVR 877


>gi|326436309|gb|EGD81879.1| ubiquitin specific peptidase 11 [Salpingoeca sp. ATCC 50818]
          Length = 1525

 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 154/552 (27%), Positives = 223/552 (40%), Gaps = 142/552 (25%)

Query: 56   GAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRL 115
            GA   +   L +G DY+L+ + VW  L  W+GGGPTL R V    +    +  ++YPL L
Sbjct: 592  GASTRLRPHLTQGVDYVLVSEPVWTALSHWHGGGPTLQRPVCR--MQDGTVQPDIYPLVL 649

Query: 116  QLLVM--PRGECSTIRIS----------------------KKETIGELHRRACSIFY--- 148
            +++    P  + S +R                        +  T   L +  C +     
Sbjct: 650  RVMQHQGPGLKASILRFFGGSDPAETKAPQIAFGFAIDAFRTTTCKRLLKSVCHMLGTVP 709

Query: 149  -----LNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSI 203
                 +  +Q  +WDY   RK  L+ + D TL D +   + +IL+E L N +  +  S I
Sbjct: 710  NGVRGVTPDQARLWDYRSPRKPTLLTNDDATLLDLHFGNNDEILLE-LRNTD-LSWPSEI 767

Query: 204  QDNGFAEKKASS--VLVEPSKSSLSIAGGWSA----------------SKGTSRNHSSEI 245
                 A + A+    LV+    ++   GG  +                 + +S  +    
Sbjct: 768  LAVAKANQHAAGGETLVD---VAMDTEGGAPSVAAATASPSSATTRRQRRASSNRNHHHH 824

Query: 246  STSPNLASARDSDNTLGSSGVTTRGASV-------------------------------- 273
                +  + R SD+T GS  +  +G +                                 
Sbjct: 825  HHHHDAQTGRSSDSTSGSGRLRKKGRTEAAAASSSSPASSSPSRGRGDDDTDSSSSSEKE 884

Query: 274  ----GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------- 321
                G  GL NLGNTCF+NSA+QCLVHT     YF R  +  E+N  NPLG         
Sbjct: 885  VVVHGRAGLSNLGNTCFLNSAVQCLVHTRPLTEYFLRRQHVLELNKANPLGHQGVIASEY 944

Query: 322  ---------------------------------------ELLAFLLDGLHEDLNRVKHKP 342
                                                   E L+FLLDGLHEDLNRV  KP
Sbjct: 945  GRLVSRLWNGKGCVAPVKLRSAVQKFAPHFAGYQQHDSQEFLSFLLDGLHEDLNRVMKKP 1004

Query: 343  YIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMY 402
            Y++ KD++GRPD  VA E W  H+ RN S+IVD+ QG  KS L C  C   SV FDP+ +
Sbjct: 1005 YVERKDSNGRPDRVVAREAWEGHLLRNRSVIVDMFQGLLKSRLRCQTCKTTSVAFDPYSF 1064

Query: 403  LSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKV 462
            LSLPL       + + +    G A P  Y++ +      R + + LG +  L     +  
Sbjct: 1065 LSLPLPTEGRSVVEIKLHRLSGKA-PRLYSIALKTEETYRTIREALGKLAGL-HPMAIVF 1122

Query: 463  AEIQNHSIQRFL 474
             +  N  IQR L
Sbjct: 1123 VDAANSRIQRVL 1134


>gi|47213596|emb|CAG07262.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1000

 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 120/336 (35%), Positives = 165/336 (49%), Gaps = 75/336 (22%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM--------VELL 324
           G+ GL NLGNTCFMNSA+QCL +TP    YF  + Y  E+N+ NPLGM         +++
Sbjct: 280 GVCGLTNLGNTCFMNSALQCLSNTPPLTEYFLGNSYLDELNFTNPLGMKGEIAEAYADVV 339

Query: 325 AFLLDGLH----------------------------------------------EDLNRV 338
             +  G H                                              EDLNRV
Sbjct: 340 KQIWSGRHYSVVPRIFKVQNAGCETKVGHFASQFLGYQQHDSQELLSFLLDGLHEDLNRV 399

Query: 339 KHKPYIKSKDADGRPD------------EEVADEYWANHIARNDSIIVDVCQGQYKSTLV 386
           K+K YI+ +DADGRPD            +EVA+E W NH  RNDS+IVD   G +KSTL+
Sbjct: 400 KNKEYIELRDADGRPDQTDGRLALCSPAQEVAEEAWRNHRRRNDSVIVDTFHGLFKSTLI 459

Query: 387 CPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQ 446
           CP C K+SVTFDPF YLS+PL  +  R M V   + D  A P+ + V VPK GR  DL  
Sbjct: 460 CPECRKISVTFDPFCYLSIPLPVSKERVMEVFFVSLDPYAKPAQHRVVVPKAGRVSDLCA 519

Query: 447 VLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTIKDDDHLAAYRVPKLVKKAVF 504
            L     +  S ++ VA++ NH   +    D+   +LS I D D +  Y +    ++ V 
Sbjct: 520 ALSETTGVPPS-QMVVADVFNHRFYKIYTCDE---ALSCILDRDDIFVYELSAREEEPVL 575

Query: 505 LQLI--HRLQEQEPGAAQTTSQWKAYGTPLVSSISR 538
           L L    R   ++ G+  ++     +G PL+ S++R
Sbjct: 576 LALYLRERSHYRDYGSGSSSYGTTLFGHPLLLSVAR 611



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 69/178 (38%), Positives = 110/178 (61%), Gaps = 7/178 (3%)

Query: 642 VYVDWSQKLLEKYNTHFLENLLEVFKNGP-VTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
           V +DW  ++ +++   + EN  E +   P +    +   + L  C+E F   E L  E+ 
Sbjct: 721 VAIDWDPEMKKRF---YNENEAEKYVKHPSMDVPLQQTTVQLQECIELFTTVETLEEENP 777

Query: 701 WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
           WYCP CK+ + A+KKLDLW LPEVL+IHLKRFSY++  + KLE+ V+FP+ + + + ++ 
Sbjct: 778 WYCPVCKKHQLATKKLDLWSLPEVLIIHLKRFSYTKFTREKLESVVDFPLRNLDFSGFLL 837

Query: 761 NKNSSRRQ---LYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDV 815
            KN   ++    Y+L A++NHYGG+  GHYT++ +  D  +WY FDDS ++   ED +
Sbjct: 838 RKNVPSQEPPSRYDLIAVSNHYGGLRDGHYTSYARHKDNAQWYYFDDSKVTFAAEDQI 895



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 68/151 (45%), Gaps = 40/151 (26%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           W++ W  +V       TGD +S            S  P  IDN++L  D  +        
Sbjct: 44  WYEQWKQFVE------TGDQNS------------SSFPGQIDNTELFEDLDSY------H 79

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           I + L+E  D++L+P E W++L SWYG   G P L RK            VEVYP+ L L
Sbjct: 80  IKERLVENEDFVLVPAEAWHKLLSWYGMVDGQPPLERK------------VEVYPIELFL 127

Query: 118 LVMPRGECS-TIRISKKETIGELHRRACSIF 147
            +    E + T + S+ ++I  + R  C  F
Sbjct: 128 CLHSNMENAVTAQFSRTDSIYTIQRAVCEAF 158


>gi|353231065|emb|CCD77483.1| ubiquitin-specific peptidase 4 (C19 family) [Schistosoma mansoni]
          Length = 872

 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 144/482 (29%), Positives = 208/482 (43%), Gaps = 131/482 (27%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           WW  W ++V+    +   D +S             + P  +DNSD++ D          +
Sbjct: 67  WWTKWEEFVDSVSKSGIVDETS------------EEYPGKVDNSDILYDG---------K 105

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYGGGPT----LARKVISSGLSQTELAVEVYPLRLQ 116
           + + LL   D  L+P+ VW     +YG   T      R+ I +  S     +E+YP    
Sbjct: 106 LKENLLLESDITLIPRNVWKLFVDFYGCTHTDISVFERRAIQAPKSA---EIEIYPPHYS 162

Query: 117 LLVMPRGECSTIRIS----KKETIGEL------HRRACSIFYLNLEQICIWDYYGHRKHA 166
             + P    +T+       K +TI EL      H +A     ++L       +    +  
Sbjct: 163 FYLNPSNSSATLLFEGTYCKFQTIRELKAIVAQHLKAAPGVNVHLSI-----HNEQNEFE 217

Query: 167 LMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLS 226
            + D D T+++ N++ ++ I V+ L+  NG   +S I  N    K   S+  +P    LS
Sbjct: 218 ELEDEDATIEETNLEREKVIFVQ-LEPRNGI--RSDISVNSSRLKSNDSIGSQPESQMLS 274

Query: 227 IAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCF 286
           + G                 + P L                      G+ GL NLGNTCF
Sbjct: 275 LHG-----------------SGPPLVP--------------------GVCGLNNLGNTCF 297

Query: 287 MNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG-------------------------- 319
           MNSA+QC+ + P    YF    ++ E+N +NPLG                          
Sbjct: 298 MNSALQCMSNVPALTSYFLSGKWKSELNIRNPLGSQGRIATAYADLIKQLWSGTRAYAVP 357

Query: 320 ---------------------MVELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVA 358
                                  ELL FLLDGLHEDLNR+  KPYI+ KD+DGRPD EVA
Sbjct: 358 REFKIEIARIARQFSGYAQHDTHELLVFLLDGLHEDLNRIHSKPYIEVKDSDGRPDIEVA 417

Query: 359 DEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVT 418
           +E W  + +RNDSIIVD+  GQ KST++CP C + SVTFDPF  L LP+Q     T+ V 
Sbjct: 418 NEAWEYYKSRNDSIIVDLFHGQLKSTVICPTCQRKSVTFDPFASLILPIQEVYKYTVRVY 477

Query: 419 VF 420
           V+
Sbjct: 478 VW 479



 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 61/136 (44%), Positives = 79/136 (58%), Gaps = 2/136 (1%)

Query: 670 PVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHL 729
           PVT+    E L L  C E F   E L   D+WYC +CK  + A+KK DLW+LP+VLV+ L
Sbjct: 722 PVTR--LNETLKLSDCFERFTDIEQLGSRDLWYCSRCKAEKPATKKFDLWKLPDVLVVQL 779

Query: 730 KRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTA 789
           KRF        K++T + FP+   NLT  V  K    + +Y+L A++NH G +G GHYTA
Sbjct: 780 KRFRSHLRFHDKIDTLLEFPLTGLNLTSRVLEKKPDEKFIYDLVAVSNHMGYLGGGHYTA 839

Query: 790 HIKLLDENRWYNFDDS 805
                  NRWY FDDS
Sbjct: 840 FALNAHTNRWYFFDDS 855


>gi|348581896|ref|XP_003476713.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19 isoform 3
           [Cavia porcellus]
          Length = 1296

 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 153/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 513 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 572

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 573 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 632

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 633 TVDSDGRPDEVVAAEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 692

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + +  F  +    P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 693 PL-PQKQKVLPIFYFAREPHCKPIKFLVSVSKENSSASEVLDSLSQSVHVK-PENLRLAE 750

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +  P+L K + V L++  R Q
Sbjct: 751 VIKNRFHRVFL--PSQSLDTVSPSDTLLCFELLSPELAKERVVVLEVQQRPQ 800



 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 83/206 (40%), Positives = 115/206 (55%), Gaps = 17/206 (8%)

Query: 638  TSIVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFL 690
            T + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F 
Sbjct: 1024 TPLELGEDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFT 1083

Query: 691  REEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNF 748
            R E L PE+ WYCPQCK  R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V F
Sbjct: 1084 RPEVLAPEEAWYCPQCKLHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEF 1142

Query: 749  PIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYN 801
            P+ + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  
Sbjct: 1143 PVRNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRL 1202

Query: 802  FDDSHISPINEDDVKSAAAYVLFYRR 827
            FDDS ++ ++E  V +  AYVLFYRR
Sbjct: 1203 FDDSTVTTVDESQVVTRYAYVLFYRR 1228


>gi|348581892|ref|XP_003476711.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19 isoform 1
           [Cavia porcellus]
          Length = 1321

 Score =  183 bits (465), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 153/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 538 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 597

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 598 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 657

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 658 TVDSDGRPDEVVAAEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 717

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + +  F  +    P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 718 PL-PQKQKVLPIFYFAREPHCKPIKFLVSVSKENSSASEVLDSLSQSVHVK-PENLRLAE 775

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +  P+L K + V L++  R Q
Sbjct: 776 VIKNRFHRVFL--PSQSLDTVSPSDTLLCFELLSPELAKERVVVLEVQQRPQ 825



 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 83/206 (40%), Positives = 115/206 (55%), Gaps = 17/206 (8%)

Query: 638  TSIVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFL 690
            T + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F 
Sbjct: 1049 TPLELGEDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFT 1108

Query: 691  REEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNF 748
            R E L PE+ WYCPQCK  R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V F
Sbjct: 1109 RPEVLAPEEAWYCPQCKLHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEF 1167

Query: 749  PIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYN 801
            P+ + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  
Sbjct: 1168 PVRNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRL 1227

Query: 802  FDDSHISPINEDDVKSAAAYVLFYRR 827
            FDDS ++ ++E  V +  AYVLFYRR
Sbjct: 1228 FDDSTVTTVDESQVVTRYAYVLFYRR 1253


>gi|149018525|gb|EDL77166.1| rCG25629, isoform CRA_a [Rattus norvegicus]
          Length = 1322

 Score =  183 bits (465), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 113/292 (38%), Positives = 155/292 (53%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 536 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 595

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 596 RALWKGTHQAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 655

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 656 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 715

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + +  F  +  + P  + V+V K +    ++++ L     +K  E L++AE
Sbjct: 716 PL-PQKQKVLPIYYFAREPHSKPIKFLVSVSKENSSASEVLESLSQSVHVK-PESLRLAE 773

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL  +   D L  + +  P+L K + V L++  R Q
Sbjct: 774 VIKNRFHRVFL--PSHSLDAVSPTDVLLCFELLSPELAKERVVVLEVQQRPQ 823



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 75/168 (44%), Positives = 102/168 (60%), Gaps = 10/168 (5%)

Query: 669  GPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIH 728
            G   + AR    +L  CL  F R E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ 
Sbjct: 1088 GSAGEAARAGHFTLDQCLNLFTRPEVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQ 1147

Query: 729  LKRFSYSRSM--KHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGH 786
            LKRFS+ RS   + K+   V FP+ + +L+K+   +   +   Y+LYA+ NHYGGM  GH
Sbjct: 1148 LKRFSF-RSFIWRDKINDLVEFPVRNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGH 1206

Query: 787  YTAHIKLLDENR-------WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            YTA  +L  +         W  FDDS ++ ++E  V +  AYVLFYRR
Sbjct: 1207 YTACARLPSDRSSQRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRR 1254


>gi|354500243|ref|XP_003512210.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19 isoform 2
           [Cricetulus griseus]
          Length = 1300

 Score =  183 bits (464), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 113/292 (38%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 514 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 573

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 574 RALWKGTHQAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 633

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 634 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 693

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + +  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 694 PL-PQKQKVLPIFYFAREPHSKPIKFLVSVSKENSSASEVLDSLSQSVHVK-PENLRLAE 751

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL  +   D L  + +  P+L K + V L++  R Q
Sbjct: 752 VIKNRFHRVFL--PSHSLDAVSPTDMLLCFELLSPELAKERVVVLEVQQRPQ 801



 Score =  152 bits (385), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 75/168 (44%), Positives = 103/168 (61%), Gaps = 10/168 (5%)

Query: 669  GPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIH 728
            G   + AR    +L  CL  F R E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ 
Sbjct: 1066 GSAGEAARAGHFTLDQCLNLFTRPEVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQ 1125

Query: 729  LKRFSYSRSM--KHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGH 786
            LKRFS+ RS   + K+   V FP+ + +L+K+   +   +   Y+LYA+ NHYGGM  GH
Sbjct: 1126 LKRFSF-RSFIWRDKINDLVEFPVRNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGH 1184

Query: 787  YTAHIKLLDENR-------WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            YTA  +L ++         W  FDDS ++ ++E  V +  AYVLFYRR
Sbjct: 1185 YTACARLPNDRSSQRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRR 1232


>gi|403413657|emb|CCM00357.1| predicted protein [Fibroporia radiculosa]
          Length = 1285

 Score =  183 bits (464), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 139/452 (30%), Positives = 206/452 (45%), Gaps = 93/452 (20%)

Query: 41  IDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGG-PTLARKVISS 99
           +DNSD+V+   A D       ++  +   D + +PQ+VW     WYG    +L RKV++ 
Sbjct: 118 VDNSDIVSSTDAND-------INQNVAPDDLVYVPQQVWEWFTRWYGQPHQSLPRKVVAR 170

Query: 100 GLSQTELAVEVYPLRLQLLVM-----------PRGE-----------CSTIRISKKETIG 137
           G+ Q EL++E++PL++++ ++           PR              +T+  S  +   
Sbjct: 171 GV-QAELSLELHPLKIRMHILSADTASQPETPPRYATVSSVASVTDLVTTLATSMSDLAA 229

Query: 138 ELHRRACSIF--YLNLEQI-CIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNV 194
               RA  +      L+ + C       R   L++   R+++DA IQ     + E     
Sbjct: 230 TSSWRAWKLADDSRPLDSLYCTSTQLKERGATLVDPSTRSVEDALIQSGDSFVYEEESLT 289

Query: 195 NGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGG------WSASKGTSRNHSSEISTS 248
           +     +++     A   ++S  +  + +   + G          +K TS   +S  + S
Sbjct: 290 SWVVDANTVSAQPVAASASTSEPITTNSTPPKVFGSDGDFFSQMQAKLTSPAKTSLAAPS 349

Query: 249 PNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED- 307
               S      +  SS         G  GL N+GNTCFMNSA+QCL HT E   YF    
Sbjct: 350 ALKPSVTIKPTSATSSRYKASSLEPGTLGLGNMGNTCFMNSALQCLAHTKELMDYFLTGV 409

Query: 308 YRREINWQNPLGMV---------------------------------------------- 321
           +  E+N  NPLGM                                               
Sbjct: 410 FEEELNPDNPLGMQGAIAQAFGALLQRIWATGSSSTSYSPREFKQALQRFAPQFSGYQQH 469

Query: 322 ---ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEV---ADEYWANHIARNDSIIVD 375
              EL+AFLLDGLHEDLNRV  KPY++  D +G  D+E+   A+E W  ++ RNDS+IVD
Sbjct: 470 DSQELVAFLLDGLHEDLNRVLKKPYVEKPDWEGGGDKELVGLANESWQGYMRRNDSVIVD 529

Query: 376 VCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPL 407
           + QGQY+STLVCP C KVS+TFDPFMYL+LPL
Sbjct: 530 LFQGQYQSTLVCPECEKVSITFDPFMYLTLPL 561



 Score =  142 bits (358), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 110/167 (65%), Gaps = 19/167 (11%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            +SL  CL+ F REE L  +D+WYCP+CK+ +QA K+ DLW++P+VLV+HLKRFS SR+++
Sbjct: 910  ISLQDCLDEFTREEQLGADDLWYCPRCKKHQQAMKRFDLWKVPDVLVVHLKRFSNSRTLR 969

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRR-------------------QLYELYALTNHYG 780
             K++TFV+FPI+  +++  V  +  ++R                    +Y+LYA+  H G
Sbjct: 970  DKIDTFVDFPINGLDISPMVGERQVAQRLVEQGVDIAQLGLSDIDEPLIYDLYAVDEHLG 1029

Query: 781  GMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            G+G GHY A+      ++WY+FDDS++SP+  +   +A AY+LFY+R
Sbjct: 1030 GLGGGHYRAYAYNDTTDKWYHFDDSYVSPVQPEAAVNANAYLLFYKR 1076


>gi|432865793|ref|XP_004070616.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19-like [Oryzias
            latipes]
          Length = 1552

 Score =  183 bits (464), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 111/289 (38%), Positives = 153/289 (52%), Gaps = 56/289 (19%)

Query: 274  GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLG------------- 319
            G TGL+NLGNTCFMNS IQ L +T E   YF +  +  EIN  NPLG             
Sbjct: 741  GFTGLVNLGNTCFMNSVIQSLSNTRELRDYFHDRAFEAEINCSNPLGTGGRLAIGFAVLL 800

Query: 320  ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                                E +AFLLDGLHEDLNR+++KPY +
Sbjct: 801  RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 860

Query: 346  SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
            + D+DGR DE VA+E W  H  RNDS IVD+ QGQ+KS LVCP+C+KVS+TFDPF+YL +
Sbjct: 861  TVDSDGRLDEVVAEEAWQRHKMRNDSFIVDLFQGQFKSKLVCPMCSKVSITFDPFLYLPV 920

Query: 406  PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
            PL     + ++V  F  +    P  + V+V K +    ++++ +     +K  E L++AE
Sbjct: 921  PL-PQKQKVLSVFFFAKEPHKKPIKFLVSVSKENSSTAEVLESISRSVRVK-PENLRIAE 978

Query: 465  IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVKKAVFLQLIHR 510
            +  +  QR FL  P  SL T+   D L  + +    L K+ V L  +H+
Sbjct: 979  VSKNRFQRIFL--PSQSLDTVSPSDMLFCFELLSKDLAKERVLLIKVHQ 1025



 Score =  155 bits (392), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 96/273 (35%), Positives = 149/273 (54%), Gaps = 21/273 (7%)

Query: 573  SSMVTTVDPSGEAHSNSSSNIAKEDA-------SSSKAVTLPNLPLQLVDESNVCFDLSV 625
            S+   ++DP  E  ++    +  E A       S S +       + L+D +N    L  
Sbjct: 1208 STSCCSLDPHAEKETSCEKTVRPEAAVTGYQHSSESASGHASQFYIALLDSNNKEQRLDE 1267

Query: 626  EGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTC 685
            +GD    +P  +T  +V+ +   + L++Y     + L      G +++ AR    +L  C
Sbjct: 1268 KGDALADLPEDATLELVWKN--NERLKEYVLVSSKELEYEEDPGSLSETARAGHFTLEQC 1325

Query: 686  LEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLE 743
            L  F + E L PE+ WYCP+C++ R+ASK+L LWRLP VL+I LKRFS+ RS   + K+ 
Sbjct: 1326 LNLFTKPEVLAPEEAWYCPKCQQHREASKQLLLWRLPNVLIIQLKRFSF-RSFIWRDKIN 1384

Query: 744  TFVNFPIHDFNLTKYVANKNSSRRQ--LYELYALTNHYGGMGSGHYTAHIKLL-DENR-- 798
              V+FP+ + +L+K+   +    +Q  +Y+LYA+ NHYGGM  GHYTA+ +L  D+N   
Sbjct: 1385 DMVDFPVRNLDLSKFCIGQKDDMQQPPIYDLYAVINHYGGMIGGHYTAYARLPSDKNSQR 1444

Query: 799  ----WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
                W  FDDS ++ + E  V +  AYVLFYRR
Sbjct: 1445 SDVGWRLFDDSTVTMVEESQVVTRYAYVLFYRR 1477


>gi|354500245|ref|XP_003512211.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19 isoform 3
           [Cricetulus griseus]
          Length = 1323

 Score =  183 bits (464), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 113/292 (38%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 537 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 596

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 597 RALWKGTHQAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 656

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 657 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 716

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + +  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 717 PL-PQKQKVLPIFYFAREPHSKPIKFLVSVSKENSSASEVLDSLSQSVHVK-PENLRLAE 774

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL  +   D L  + +  P+L K + V L++  R Q
Sbjct: 775 VIKNRFHRVFL--PSHSLDAVSPTDMLLCFELLSPELAKERVVVLEVQQRPQ 824



 Score =  152 bits (384), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 75/168 (44%), Positives = 103/168 (61%), Gaps = 10/168 (5%)

Query: 669  GPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIH 728
            G   + AR    +L  CL  F R E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ 
Sbjct: 1089 GSAGEAARAGHFTLDQCLNLFTRPEVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQ 1148

Query: 729  LKRFSYSRSM--KHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGH 786
            LKRFS+ RS   + K+   V FP+ + +L+K+   +   +   Y+LYA+ NHYGGM  GH
Sbjct: 1149 LKRFSF-RSFIWRDKINDLVEFPVRNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGH 1207

Query: 787  YTAHIKLLDENR-------WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            YTA  +L ++         W  FDDS ++ ++E  V +  AYVLFYRR
Sbjct: 1208 YTACARLPNDRSSQRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRR 1255


>gi|149018526|gb|EDL77167.1| rCG25629, isoform CRA_b [Rattus norvegicus]
          Length = 1359

 Score =  183 bits (464), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 113/292 (38%), Positives = 155/292 (53%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 536 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 595

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 596 RALWKGTHQAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 655

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 656 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 715

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + +  F  +  + P  + V+V K +    ++++ L     +K  E L++AE
Sbjct: 716 PL-PQKQKVLPIYYFAREPHSKPIKFLVSVSKENSSASEVLESLSQSVHVK-PESLRLAE 773

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL  +   D L  + +  P+L K + V L++  R Q
Sbjct: 774 VIKNRFHRVFL--PSHSLDAVSPTDVLLCFELLSPELAKERVVVLEVQQRPQ 823



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 75/168 (44%), Positives = 102/168 (60%), Gaps = 10/168 (5%)

Query: 669  GPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIH 728
            G   + AR    +L  CL  F R E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ 
Sbjct: 1088 GSAGEAARAGHFTLDQCLNLFTRPEVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQ 1147

Query: 729  LKRFSYSRSM--KHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGH 786
            LKRFS+ RS   + K+   V FP+ + +L+K+   +   +   Y+LYA+ NHYGGM  GH
Sbjct: 1148 LKRFSF-RSFIWRDKINDLVEFPVRNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGH 1206

Query: 787  YTAHIKLLDENR-------WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            YTA  +L  +         W  FDDS ++ ++E  V +  AYVLFYRR
Sbjct: 1207 YTACARLPSDRSSQRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRR 1254


>gi|348581894|ref|XP_003476712.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19 isoform 2
           [Cavia porcellus]
          Length = 1357

 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 153/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 537 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 596

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 597 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 656

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 657 TVDSDGRPDEVVAAEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 716

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + +  F  +    P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 717 PL-PQKQKVLPIFYFAREPHCKPIKFLVSVSKENSSASEVLDSLSQSVHVK-PENLRLAE 774

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +  P+L K + V L++  R Q
Sbjct: 775 VIKNRFHRVFL--PSQSLDTVSPSDTLLCFELLSPELAKERVVVLEVQQRPQ 824



 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 75/168 (44%), Positives = 102/168 (60%), Gaps = 10/168 (5%)

Query: 669  GPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIH 728
            G   + AR    +L  CL  F R E L PE+ WYCPQCK  R+ASK+L LWRLP VL++ 
Sbjct: 1086 GSAGEAARAGHFTLDQCLNLFTRPEVLAPEEAWYCPQCKLHREASKQLLLWRLPNVLIVQ 1145

Query: 729  LKRFSYSRSM--KHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGH 786
            LKRFS+ RS   + K+   V FP+ + +L+K+   +   +   Y+LYA+ NHYGGM  GH
Sbjct: 1146 LKRFSF-RSFIWRDKINDLVEFPVRNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGH 1204

Query: 787  YTAHIKLLDENR-------WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            YTA  +L ++         W  FDDS ++ ++E  V +  AYVLFYRR
Sbjct: 1205 YTACARLPNDRSSQRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRR 1252


>gi|270012100|gb|EFA08548.1| hypothetical protein TcasGA2_TC006203 [Tribolium castaneum]
          Length = 933

 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 170/668 (25%), Positives = 285/668 (42%), Gaps = 129/668 (19%)

Query: 256 DSDNTLGSSGVTTRGA--SVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREI 312
           + D+ +   G+ T G   + G+TGL N GNTCF+N+ +QC+ HT   A YF  D Y+ ++
Sbjct: 91  NGDSRVPPVGLQTWGPDDTPGVTGLKNHGNTCFINAVLQCISHTDVLAEYFVLDRYKIDL 150

Query: 313 NWQNPLG----------------------------------------------------M 320
           + +N L                                                      
Sbjct: 151 SRRNKLNSKKFGTKGEITEQLALLLKALWACQYSPELSTSFKQVVERHGSQYKGNQQHDA 210

Query: 321 VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQ 380
           +E L +LLD +HEDLN    K Y K     GR DE +A E   N+   N+S I  V Q Q
Sbjct: 211 LEFLQWLLDKVHEDLNTASKKKY-KLIKTSGRSDEVIAAETLENYKRCNNSFIQGVFQAQ 269

Query: 381 YKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGR 440
           Y+S+L C  C   S TFDPF  +S+ L   + +++ VTV  +          +++P    
Sbjct: 270 YRSSLSCSRCRTQSNTFDPFQCISVQLPQFSKQSIYVTVLYTSQQPRQVQIGLSLPSGAT 329

Query: 441 CRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKL-- 498
             +L  +L +  S++++  L + EI      R   D   S++ I + D +    V +L  
Sbjct: 330 VSELRDILESDTSIERANML-ITEIGETGFLRTFTDTQ-SVNIISEIDPIYCIEVAQLKD 387

Query: 499 -----VKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQR 553
                    + L  I+ +QE +         +K +G+P    +SR+   S   +Q  + +
Sbjct: 388 LEEDTTSAYILLCWINVVQEGD--------GFKRFGSPYTMQVSRE--TSYEDLQKLLLK 437

Query: 554 MLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQL 613
            ++P L      H D      ++T+  P G      S     ++            PL +
Sbjct: 438 EMAPIL------HDD------ILTSAQPKGVFKIRISDPACNDNEPPCYLEPELEHPLFM 485

Query: 614 VDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTK 673
            D        S EG      P     ++ +   ++  +   +T  +E    V K      
Sbjct: 486 EDVDQALALCSEEGG-----PPHVKLVIEFTQSAKNAIIADDTDIIEEHSSV-KQLKAQA 539

Query: 674 KARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF- 732
                PL+L  CL  +   E L   D W CP C++ +   K LD+W LP++LV+H KRF 
Sbjct: 540 LQGGAPLTLEECLRDYTEAETLT--DAWRCPHCQQYQPVVKTLDMWSLPDILVVHFKRFR 597

Query: 733 --SYSRSMKHKLETFVNFPIHDFNLTKYVANKNS------------------SRRQ---- 768
             +       KL   V+FP+++ +++ ++ANK                    +R+Q    
Sbjct: 598 QQTLRGCSSAKLINMVDFPVYNLDMSPHLANKGQNISEDQMIMTNGWSPFKRTRKQSNAN 657

Query: 769 --LYELYALTNHYGG-MGSGHYTAHIKLLDENRWYNFDDSHISPINE--DDVKSA----A 819
             +Y+LY +  H+G  + +GHYTA  K   +N+WY +DD+ ++ +++  DD+ +     +
Sbjct: 658 DNMYDLYGICYHHGSDIETGHYTAACKNPYDNQWYLYDDAKVTNLSKQTDDISALLVNNS 717

Query: 820 AYVLFYRR 827
           AY+LFY+R
Sbjct: 718 AYILFYQR 725


>gi|91088095|ref|XP_969130.1| PREDICTED: similar to ubiquitin carboxyl-terminal hydrolase 43
           [Tribolium castaneum]
          Length = 859

 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 170/668 (25%), Positives = 285/668 (42%), Gaps = 129/668 (19%)

Query: 256 DSDNTLGSSGVTTRGA--SVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREI 312
           + D+ +   G+ T G   + G+TGL N GNTCF+N+ +QC+ HT   A YF  D Y+ ++
Sbjct: 70  NGDSRVPPVGLQTWGPDDTPGVTGLKNHGNTCFINAVLQCISHTDVLAEYFVLDRYKIDL 129

Query: 313 NWQNPLG----------------------------------------------------M 320
           + +N L                                                      
Sbjct: 130 SRRNKLNSKKFGTKGEITEQLALLLKALWACQYSPELSTSFKQVVERHGSQYKGNQQHDA 189

Query: 321 VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQ 380
           +E L +LLD +HEDLN    K Y K     GR DE +A E   N+   N+S I  V Q Q
Sbjct: 190 LEFLQWLLDKVHEDLNTASKKKY-KLIKTSGRSDEVIAAETLENYKRCNNSFIQGVFQAQ 248

Query: 381 YKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGR 440
           Y+S+L C  C   S TFDPF  +S+ L   + +++ VTV  +          +++P    
Sbjct: 249 YRSSLSCSRCRTQSNTFDPFQCISVQLPQFSKQSIYVTVLYTSQQPRQVQIGLSLPSGAT 308

Query: 441 CRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKL-- 498
             +L  +L +  S++++  L + EI      R   D   S++ I + D +    V +L  
Sbjct: 309 VSELRDILESDTSIERANML-ITEIGETGFLRTFTDTQ-SVNIISEIDPIYCIEVAQLKD 366

Query: 499 -----VKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQR 553
                    + L  I+ +QE +         +K +G+P    +SR+   S   +Q  + +
Sbjct: 367 LEEDTTSAYILLCWINVVQEGD--------GFKRFGSPYTMQVSRE--TSYEDLQKLLLK 416

Query: 554 MLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQL 613
            ++P L      H D      ++T+  P G      S     ++            PL +
Sbjct: 417 EMAPIL------HDD------ILTSAQPKGVFKIRISDPACNDNEPPCYLEPELEHPLFM 464

Query: 614 VDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTK 673
            D        S EG      P     ++ +   ++  +   +T  +E    V K      
Sbjct: 465 EDVDQALALCSEEGG-----PPHVKLVIEFTQSAKNAIIADDTDIIEEHSSV-KQLKAQA 518

Query: 674 KARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF- 732
                PL+L  CL  +   E L   D W CP C++ +   K LD+W LP++LV+H KRF 
Sbjct: 519 LQGGAPLTLEECLRDYTEAETLT--DAWRCPHCQQYQPVVKTLDMWSLPDILVVHFKRFR 576

Query: 733 --SYSRSMKHKLETFVNFPIHDFNLTKYVANKNS------------------SRRQ---- 768
             +       KL   V+FP+++ +++ ++ANK                    +R+Q    
Sbjct: 577 QQTLRGCSSAKLINMVDFPVYNLDMSPHLANKGQNISEDQMIMTNGWSPFKRTRKQSNAN 636

Query: 769 --LYELYALTNHYGG-MGSGHYTAHIKLLDENRWYNFDDSHISPINE--DDVKSA----A 819
             +Y+LY +  H+G  + +GHYTA  K   +N+WY +DD+ ++ +++  DD+ +     +
Sbjct: 637 DNMYDLYGICYHHGSDIETGHYTAACKNPYDNQWYLYDDAKVTNLSKQTDDISALLVNNS 696

Query: 820 AYVLFYRR 827
           AY+LFY+R
Sbjct: 697 AYILFYQR 704


>gi|48040522|ref|NP_001001516.1| ubiquitin carboxyl-terminal hydrolase 19 [Rattus norvegicus]
 gi|81863791|sp|Q6J1Y9.1|UBP19_RAT RecName: Full=Ubiquitin carboxyl-terminal hydrolase 19; AltName:
           Full=Deubiquitinating enzyme 19; AltName: Full=Ubiquitin
           thioesterase 19; AltName:
           Full=Ubiquitin-specific-processing protease 19
 gi|47525210|gb|AAT35219.1| ubiquitin specific protease 19 [Rattus norvegicus]
          Length = 1357

 Score =  182 bits (463), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 113/292 (38%), Positives = 155/292 (53%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 534 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 593

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 594 RALWKGTHQAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 653

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 654 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 713

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + +  F  +  + P  + V+V K +    ++++ L     +K  E L++AE
Sbjct: 714 PL-PQKQKVLPIYYFAREPHSKPIKFLVSVSKENSSASEVLESLSQSVHVK-PESLRLAE 771

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL  +   D L  + +  P+L K + V L++  R Q
Sbjct: 772 VIKNRFHRVFL--PSHSLDAVSPTDVLLCFELLSPELAKERVVVLEVQQRPQ 821



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 75/168 (44%), Positives = 102/168 (60%), Gaps = 10/168 (5%)

Query: 669  GPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIH 728
            G   + AR    +L  CL  F R E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ 
Sbjct: 1086 GSAGEAARAGHFTLDQCLNLFTRPEVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQ 1145

Query: 729  LKRFSYSRSM--KHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGH 786
            LKRFS+ RS   + K+   V FP+ + +L+K+   +   +   Y+LYA+ NHYGGM  GH
Sbjct: 1146 LKRFSF-RSFIWRDKINDLVEFPVRNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGH 1204

Query: 787  YTAHIKLLDENR-------WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            YTA  +L  +         W  FDDS ++ ++E  V +  AYVLFYRR
Sbjct: 1205 YTACARLPSDRSSQRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRR 1252


>gi|327289574|ref|XP_003229499.1| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal
           hydrolase 31-like, partial [Anolis carolinensis]
          Length = 1341

 Score =  182 bits (463), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 166/621 (26%), Positives = 266/621 (42%), Gaps = 97/621 (15%)

Query: 269 RGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDYRR---EINWQNPLGMVELLA 325
           RG S G      L N   +  A+  L +TP+ +R F+    +   +    +     E L 
Sbjct: 204 RGPSSGGEVTEQLAN---LVRALWTLEYTPQHSREFKSIVSKNAMQYRGSSQHDAQEFLL 260

Query: 326 FLLDGLHEDLNRVKHKPYIKSKDADGRP------DEEVADEYWANHIARNDSIIVDVCQG 379
           +LLD +HEDLN +     +K+   +GRP      +E++  E     I  N + + ++ Q 
Sbjct: 261 WLLDRVHEDLNNL-----VKN---NGRPSLKPPVEEDILIEGTVFPI--NCTFVQELFQA 310

Query: 380 QYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHG 439
           QY+S+L CP C K S TFDPF+ +SLP+    TR + VTV      +      V VP  G
Sbjct: 311 QYRSSLTCPHCQKQSNTFDPFLCISLPIPLPHTRPLYVTVVYRGKCSHCMRIGVAVPLSG 370

Query: 440 RCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLV 499
               L + +     +  ++++ + E+      R   D L  L T+++ D + A+  P++ 
Sbjct: 371 TVARLREAVSRETKIP-TKQIVLTEMYYDGFHRSFSD-LDDLDTVQESDCIFAFETPEIF 428

Query: 500 KKAVFL---------QLIHRLQEQEPGAAQTTSQ--WKAYGTPLVSSISRDDVI----SS 544
           +    L          L H     +P  A   SQ   +   T  V++++ D ++    + 
Sbjct: 429 RPEGILSQRGIHVNSNLNHLKYGLDPQRASLYSQGSLENSNTRAVAAVASDKLVVLVCNR 488

Query: 545 GKIQSTVQRMLSPF------------LKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSN 592
                  +R   PF            L+KE L     F   S    V P           
Sbjct: 489 ACTGQQGKRFGQPFVLHVEKTIPWDLLQKEILEKMQYFLRPSACLQVCPF---------- 538

Query: 593 IAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLE 652
                  S + V+   +   L  E      L VE          +  + + V+W +   E
Sbjct: 539 -------SLRVVSAVGITYLLPQEERPLCHLMVERALKSCGQGGTPHVKLVVEWDK---E 588

Query: 653 KYNTHFLENLLEVFKNGPVTKKAR-----TEPLSLYTCLEAFLREEPLVPEDMWYCPQCK 707
             +  F+    E   +    ++ R      +  +L  C + + +EE L P+D W CP CK
Sbjct: 589 TKDYLFVSTEEEYIPDAESVRQQRELHHQPQTCTLSQCFQLYTKEEQLAPDDAWRCPHCK 648

Query: 708 ERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSS-- 765
           + +Q S  L LW LP+VL+IHLKRF      + KL+  V FP+   ++T +V  ++ S  
Sbjct: 649 QLQQGSITLSLWTLPDVLIIHLKRFRQEGERRMKLQNMVRFPLSGLDMTPHVVKRSQSSW 708

Query: 766 ---------RRQ----------LYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSH 806
                    RR           +Y+LYA+ NH+G M  GHYTA+ K   +  WY FDDS 
Sbjct: 709 SLPSHWSPWRRPYGLGRDPEDFVYDLYAVCNHHGTMQGGHYTAYCKNSIDGLWYCFDDSE 768

Query: 807 ISPINEDDVKSAAAYVLFYRR 827
           +  + E++V    AY+LFY+R
Sbjct: 769 VQQLAENEVCKQTAYILFYQR 789



 Score = 46.6 bits (109), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 271 ASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFR-EDYR 309
           A  G++GL N GNTCFMN+ +QCL +T  FA Y   E YR
Sbjct: 140 AVPGVSGLRNHGNTCFMNAVLQCLSNTELFAEYLALEHYR 179


>gi|148689349|gb|EDL21296.1| ubiquitin specific peptidase 19, isoform CRA_d [Mus musculus]
          Length = 1338

 Score =  182 bits (463), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 113/292 (38%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 552 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 611

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 612 RALWKGTHQAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 671

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 672 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 731

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + +  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 732 PL-PQKQKVLPIFYFAREPHSKPIKFLVSVSKENSSASEVLDSLSQSVHVK-PENLRLAE 789

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL  +   D L  + +  P+L K + V L++  R Q
Sbjct: 790 VIKNRFHRVFL--PSHSLDAVSPTDVLLCFELLSPELAKERVVVLEVQQRPQ 839



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/339 (32%), Positives = 161/339 (47%), Gaps = 54/339 (15%)

Query: 505  LQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESL 564
            LQL+  + E + GA +          P  S +S  ++++SG I+        P L  E +
Sbjct: 970  LQLVTPVAEGDTGAHRVWPPADRGPVPSTSGLS-SEMLASGPIEGC------PLLAGERV 1022

Query: 565  MHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLS 624
               ++  P          G  HS+ S N              P   +  +D SN    L 
Sbjct: 1023 SRPEAAVP----------GYQHSSESVN-----------THTPQFFIYKIDASNREQRLE 1061

Query: 625  VEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKART 677
             +G+         T + +  D S  L+ + N    E +L   K        G   + AR 
Sbjct: 1062 DKGE---------TPLELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARA 1112

Query: 678  EPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRS 737
               +L  CL  F R E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS
Sbjct: 1113 GHFTLDQCLNLFTRPEVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RS 1171

Query: 738  M--KHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLD 795
               + K+   V FP+ + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L +
Sbjct: 1172 FIWRDKINDLVEFPVRNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPN 1231

Query: 796  ENR-------WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            +         W  FDDS ++ ++E  V +  AYVLFYRR
Sbjct: 1232 DRSSQRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRR 1270


>gi|351711877|gb|EHB14796.1| Ubiquitin carboxyl-terminal hydrolase 19 [Heterocephalus glaber]
          Length = 1394

 Score =  182 bits (463), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 153/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 543 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 602

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 603 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 662

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 663 TVDSDGRPDEVVAAEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 722

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + +  F  +    P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 723 PL-PQKQKVLPIFYFAREPHCKPIKFLVSVSKENSSASEVLDSLSESVHVK-PENLRLAE 780

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +  P+L K + V L++  R Q
Sbjct: 781 VIKNRFHRVFL--PSQSLDTVSPSDILLCFELLSPELAKERVVVLEVQQRPQ 830



 Score =  152 bits (384), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 75/168 (44%), Positives = 103/168 (61%), Gaps = 10/168 (5%)

Query: 669  GPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIH 728
            G   + AR    +L  CL  F R E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ 
Sbjct: 1092 GSAGEAARAGHFTLDQCLNLFTRPEVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQ 1151

Query: 729  LKRFSYSRSM--KHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGH 786
            LKRFS+ RS   + K+   V FP+ + +L+K+   +   +   Y+LYA+ NHYGGM  GH
Sbjct: 1152 LKRFSF-RSFIWRDKINDLVEFPVRNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGH 1210

Query: 787  YTAHIKLLDENR-------WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            YTA  +L ++         W  FDDS ++ ++E  V +  AYVLFYRR
Sbjct: 1211 YTACARLPNDRSSQRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRR 1258


>gi|270265851|ref|NP_663382.2| ubiquitin carboxyl-terminal hydrolase 19 isoform 5 [Mus musculus]
          Length = 1299

 Score =  182 bits (463), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 113/292 (38%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 513 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 572

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 573 RALWKGTHQAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 632

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 633 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 692

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + +  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 693 PL-PQKQKVLPIFYFAREPHSKPIKFLVSVSKENSSASEVLDSLSQSVHVK-PENLRLAE 750

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL  +   D L  + +  P+L K + V L++  R Q
Sbjct: 751 VIKNRFHRVFL--PSHSLDAVSPTDVLLCFELLSPELAKERVVVLEVQQRPQ 800



 Score =  154 bits (388), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 110/339 (32%), Positives = 161/339 (47%), Gaps = 54/339 (15%)

Query: 505  LQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESL 564
            LQL+  + E + GA +          P  S +S  ++++SG I+        P L  E +
Sbjct: 931  LQLVTPVAEGDTGAHRVWPPADRGPVPSTSGLS-SEMLASGPIEGC------PLLAGERV 983

Query: 565  MHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLS 624
               ++  P          G  HS+ S N              P   +  +D SN    L 
Sbjct: 984  SRPEAAVP----------GYQHSSESVN-----------THTPQFFIYKIDASNREQRLE 1022

Query: 625  VEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKART 677
             +G+         T + +  D S  L+ + N    E +L   K        G   + AR 
Sbjct: 1023 DKGE---------TPLELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARA 1073

Query: 678  EPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRS 737
               +L  CL  F R E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS
Sbjct: 1074 GHFTLDQCLNLFTRPEVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RS 1132

Query: 738  M--KHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLD 795
               + K+   V FP+ + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L +
Sbjct: 1133 FIWRDKINDLVEFPVRNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPN 1192

Query: 796  ENR-------WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            +         W  FDDS ++ ++E  V +  AYVLFYRR
Sbjct: 1193 DRSSQRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRR 1231


>gi|354500241|ref|XP_003512209.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19 isoform 1
           [Cricetulus griseus]
          Length = 1361

 Score =  182 bits (462), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 113/292 (38%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 538 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 597

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 598 RALWKGTHQAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 657

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 658 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 717

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + +  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 718 PL-PQKQKVLPIFYFAREPHSKPIKFLVSVSKENSSASEVLDSLSQSVHVK-PENLRLAE 775

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL  +   D L  + +  P+L K + V L++  R Q
Sbjct: 776 VIKNRFHRVFL--PSHSLDAVSPTDMLLCFELLSPELAKERVVVLEVQQRPQ 825



 Score =  152 bits (384), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 75/168 (44%), Positives = 103/168 (61%), Gaps = 10/168 (5%)

Query: 669  GPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIH 728
            G   + AR    +L  CL  F R E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ 
Sbjct: 1090 GSAGEAARAGHFTLDQCLNLFTRPEVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQ 1149

Query: 729  LKRFSYSRSM--KHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGH 786
            LKRFS+ RS   + K+   V FP+ + +L+K+   +   +   Y+LYA+ NHYGGM  GH
Sbjct: 1150 LKRFSF-RSFIWRDKINDLVEFPVRNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGH 1208

Query: 787  YTAHIKLLDENR-------WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            YTA  +L ++         W  FDDS ++ ++E  V +  AYVLFYRR
Sbjct: 1209 YTACARLPNDRSSQRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRR 1256


>gi|344254380|gb|EGW10484.1| Ubiquitin carboxyl-terminal hydrolase 19 [Cricetulus griseus]
          Length = 1357

 Score =  182 bits (462), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 113/292 (38%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 571 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 630

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 631 RALWKGTHQAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 690

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 691 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 750

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + +  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 751 PL-PQKQKVLPIFYFAREPHSKPIKFLVSVSKENSSASEVLDSLSQSVHVK-PENLRLAE 808

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL  +   D L  + +  P+L K + V L++  R Q
Sbjct: 809 VIKNRFHRVFL--PSHSLDAVSPTDMLLCFELLSPELAKERVVVLEVQQRPQ 858



 Score =  152 bits (384), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 75/168 (44%), Positives = 103/168 (61%), Gaps = 10/168 (5%)

Query: 669  GPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIH 728
            G   + AR    +L  CL  F R E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ 
Sbjct: 1123 GSAGEAARAGHFTLDQCLNLFTRPEVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQ 1182

Query: 729  LKRFSYSRSM--KHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGH 786
            LKRFS+ RS   + K+   V FP+ + +L+K+   +   +   Y+LYA+ NHYGGM  GH
Sbjct: 1183 LKRFSF-RSFIWRDKINDLVEFPVRNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGH 1241

Query: 787  YTAHIKLLDENR-------WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            YTA  +L ++         W  FDDS ++ ++E  V +  AYVLFYRR
Sbjct: 1242 YTACARLPNDRSSQRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRR 1289


>gi|270265843|ref|NP_001161843.1| ubiquitin carboxyl-terminal hydrolase 19 isoform 2 [Mus musculus]
 gi|148689346|gb|EDL21293.1| ubiquitin specific peptidase 19, isoform CRA_a [Mus musculus]
          Length = 1324

 Score =  182 bits (462), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 113/292 (38%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 538 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 597

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 598 RALWKGTHQAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 657

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 658 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 717

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + +  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 718 PL-PQKQKVLPIFYFAREPHSKPIKFLVSVSKENSSASEVLDSLSQSVHVK-PENLRLAE 775

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL  +   D L  + +  P+L K + V L++  R Q
Sbjct: 776 VIKNRFHRVFL--PSHSLDAVSPTDVLLCFELLSPELAKERVVVLEVQQRPQ 825



 Score =  154 bits (388), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 110/339 (32%), Positives = 161/339 (47%), Gaps = 54/339 (15%)

Query: 505  LQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESL 564
            LQL+  + E + GA +          P  S +S  ++++SG I+        P L  E +
Sbjct: 956  LQLVTPVAEGDTGAHRVWPPADRGPVPSTSGLS-SEMLASGPIEGC------PLLAGERV 1008

Query: 565  MHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLS 624
               ++  P          G  HS+ S N              P   +  +D SN    L 
Sbjct: 1009 SRPEAAVP----------GYQHSSESVN-----------THTPQFFIYKIDASNREQRLE 1047

Query: 625  VEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKART 677
             +G+         T + +  D S  L+ + N    E +L   K        G   + AR 
Sbjct: 1048 DKGE---------TPLELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARA 1098

Query: 678  EPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRS 737
               +L  CL  F R E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS
Sbjct: 1099 GHFTLDQCLNLFTRPEVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RS 1157

Query: 738  M--KHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLD 795
               + K+   V FP+ + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L +
Sbjct: 1158 FIWRDKINDLVEFPVRNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPN 1217

Query: 796  ENR-------WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            +         W  FDDS ++ ++E  V +  AYVLFYRR
Sbjct: 1218 DRSSQRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRR 1256


>gi|270265848|ref|NP_001161845.1| ubiquitin carboxyl-terminal hydrolase 19 isoform 4 [Mus musculus]
          Length = 1322

 Score =  182 bits (462), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 113/292 (38%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 536 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 595

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 596 RALWKGTHQAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 655

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 656 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 715

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + +  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 716 PL-PQKQKVLPIFYFAREPHSKPIKFLVSVSKENSSASEVLDSLSQSVHVK-PENLRLAE 773

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL  +   D L  + +  P+L K + V L++  R Q
Sbjct: 774 VIKNRFHRVFL--PSHSLDAVSPTDVLLCFELLSPELAKERVVVLEVQQRPQ 823



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/339 (32%), Positives = 161/339 (47%), Gaps = 54/339 (15%)

Query: 505  LQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESL 564
            LQL+  + E + GA +          P  S +S  ++++SG I+        P L  E +
Sbjct: 954  LQLVTPVAEGDTGAHRVWPPADRGPVPSTSGLS-SEMLASGPIEGC------PLLAGERV 1006

Query: 565  MHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLS 624
               ++  P          G  HS+ S N              P   +  +D SN    L 
Sbjct: 1007 SRPEAAVP----------GYQHSSESVN-----------THTPQFFIYKIDASNREQRLE 1045

Query: 625  VEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKART 677
             +G+         T + +  D S  L+ + N    E +L   K        G   + AR 
Sbjct: 1046 DKGE---------TPLELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARA 1096

Query: 678  EPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRS 737
               +L  CL  F R E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS
Sbjct: 1097 GHFTLDQCLNLFTRPEVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RS 1155

Query: 738  M--KHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLD 795
               + K+   V FP+ + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L +
Sbjct: 1156 FIWRDKINDLVEFPVRNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPN 1215

Query: 796  ENR-------WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            +         W  FDDS ++ ++E  V +  AYVLFYRR
Sbjct: 1216 DRSSQRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRR 1254


>gi|270265845|ref|NP_001161844.1| ubiquitin carboxyl-terminal hydrolase 19 isoform 3 [Mus musculus]
 gi|74144320|dbj|BAE36025.1| unnamed protein product [Mus musculus]
          Length = 1323

 Score =  182 bits (462), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 113/292 (38%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 537 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 596

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 597 RALWKGTHQAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 656

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 657 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 716

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + +  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 717 PL-PQKQKVLPIFYFAREPHSKPIKFLVSVSKENSSASEVLDSLSQSVHVK-PENLRLAE 774

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL  +   D L  + +  P+L K + V L++  R Q
Sbjct: 775 VIKNRFHRVFL--PSHSLDAVSPTDVLLCFELLSPELAKERVVVLEVQQRPQ 824



 Score =  154 bits (388), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 110/339 (32%), Positives = 161/339 (47%), Gaps = 54/339 (15%)

Query: 505  LQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESL 564
            LQL+  + E + GA +          P  S +S  ++++SG I+        P L  E +
Sbjct: 955  LQLVTPVAEGDTGAHRVWPPADRGPVPSTSGLS-SEMLASGPIEGC------PLLAGERV 1007

Query: 565  MHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLS 624
               ++  P          G  HS+ S N              P   +  +D SN    L 
Sbjct: 1008 SRPEAAVP----------GYQHSSESVN-----------THTPQFFIYKIDASNREQRLE 1046

Query: 625  VEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKART 677
             +G+         T + +  D S  L+ + N    E +L   K        G   + AR 
Sbjct: 1047 DKGE---------TPLELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARA 1097

Query: 678  EPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRS 737
               +L  CL  F R E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS
Sbjct: 1098 GHFTLDQCLNLFTRPEVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RS 1156

Query: 738  M--KHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLD 795
               + K+   V FP+ + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L +
Sbjct: 1157 FIWRDKINDLVEFPVRNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPN 1216

Query: 796  ENR-------WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            +         W  FDDS ++ ++E  V +  AYVLFYRR
Sbjct: 1217 DRSSQRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRR 1255


>gi|49022846|dbj|BAC65678.4| mKIAA0891 protein [Mus musculus]
          Length = 1362

 Score =  182 bits (462), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 113/292 (38%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 576 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 635

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 636 RALWKGTHQAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 695

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 696 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 755

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + +  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 756 PL-PQKQKVLPIFYFAREPHSKPIKFLVSVSKENSSASEVLDSLSQSVHVK-PENLRLAE 813

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL  +   D L  + +  P+L K + V L++  R Q
Sbjct: 814 VIKNRFHRVFL--PSHSLDAVSPTDVLLCFELLSPELAKERVVVLEVQQRPQ 863



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/339 (32%), Positives = 161/339 (47%), Gaps = 54/339 (15%)

Query: 505  LQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESL 564
            LQL+  + E + GA +          P  S +S  ++++SG I+        P L  E +
Sbjct: 994  LQLVTPVAEGDTGAHRVWPPADRGPVPSTSGLS-SEMLASGPIEGC------PLLAGERV 1046

Query: 565  MHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLS 624
               ++  P          G  HS+ S N              P   +  +D SN    L 
Sbjct: 1047 SRPEAAVP----------GYQHSSESVN-----------THTPQFFIYKIDASNREQRLE 1085

Query: 625  VEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKART 677
             +G+         T + +  D S  L+ + N    E +L   K        G   + AR 
Sbjct: 1086 DKGE---------TPLELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARA 1136

Query: 678  EPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRS 737
               +L  CL  F R E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS
Sbjct: 1137 GHFTLDQCLNLFTRPEVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RS 1195

Query: 738  M--KHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLD 795
               + K+   V FP+ + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L +
Sbjct: 1196 FIWRDKINDLVEFPVRNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPN 1255

Query: 796  ENR-------WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            +         W  FDDS ++ ++E  V +  AYVLFYRR
Sbjct: 1256 DRSSQRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRR 1294


>gi|148689347|gb|EDL21294.1| ubiquitin specific peptidase 19, isoform CRA_b [Mus musculus]
          Length = 1361

 Score =  182 bits (461), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 113/292 (38%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 538 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 597

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 598 RALWKGTHQAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 657

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 658 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 717

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + +  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 718 PL-PQKQKVLPIFYFAREPHSKPIKFLVSVSKENSSASEVLDSLSQSVHVK-PENLRLAE 775

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL  +   D L  + +  P+L K + V L++  R Q
Sbjct: 776 VIKNRFHRVFL--PSHSLDAVSPTDVLLCFELLSPELAKERVVVLEVQQRPQ 825



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/339 (32%), Positives = 161/339 (47%), Gaps = 54/339 (15%)

Query: 505  LQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESL 564
            LQL+  + E + GA +          P  S +S  ++++SG I+        P L  E +
Sbjct: 956  LQLVTPVAEGDTGAHRVWPPADRGPVPSTSGLS-SEMLASGPIEGC------PLLAGERV 1008

Query: 565  MHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLS 624
               ++  P          G  HS+ S N              P   +  +D SN    L 
Sbjct: 1009 SRPEAAVP----------GYQHSSESVN-----------THTPQFFIYKIDASNREQRLE 1047

Query: 625  VEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKART 677
             +G+         T + +  D S  L+ + N    E +L   K        G   + AR 
Sbjct: 1048 DKGE---------TPLELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARA 1098

Query: 678  EPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRS 737
               +L  CL  F R E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS
Sbjct: 1099 GHFTLDQCLNLFTRPEVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RS 1157

Query: 738  M--KHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLD 795
               + K+   V FP+ + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L +
Sbjct: 1158 FIWRDKINDLVEFPVRNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPN 1217

Query: 796  ENR-------WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            +         W  FDDS ++ ++E  V +  AYVLFYRR
Sbjct: 1218 DRSSQRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRR 1256


>gi|270265841|ref|NP_082080.3| ubiquitin carboxyl-terminal hydrolase 19 isoform 1 [Mus musculus]
 gi|123791392|sp|Q3UJD6.1|UBP19_MOUSE RecName: Full=Ubiquitin carboxyl-terminal hydrolase 19; AltName:
           Full=Deubiquitinating enzyme 19; AltName: Full=Ubiquitin
           thioesterase 19; AltName:
           Full=Ubiquitin-specific-processing protease 19
 gi|74138825|dbj|BAE27219.1| unnamed protein product [Mus musculus]
          Length = 1360

 Score =  182 bits (461), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 113/292 (38%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 537 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 596

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 597 RALWKGTHQAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 656

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 657 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 716

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + +  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 717 PL-PQKQKVLPIFYFAREPHSKPIKFLVSVSKENSSASEVLDSLSQSVHVK-PENLRLAE 774

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL  +   D L  + +  P+L K + V L++  R Q
Sbjct: 775 VIKNRFHRVFL--PSHSLDAVSPTDVLLCFELLSPELAKERVVVLEVQQRPQ 824



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/339 (32%), Positives = 161/339 (47%), Gaps = 54/339 (15%)

Query: 505  LQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESL 564
            LQL+  + E + GA +          P  S +S  ++++SG I+        P L  E +
Sbjct: 955  LQLVTPVAEGDTGAHRVWPPADRGPVPSTSGLS-SEMLASGPIEGC------PLLAGERV 1007

Query: 565  MHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLS 624
               ++  P          G  HS+ S N              P   +  +D SN    L 
Sbjct: 1008 SRPEAAVP----------GYQHSSESVN-----------THTPQFFIYKIDASNREQRLE 1046

Query: 625  VEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKART 677
             +G+         T + +  D S  L+ + N    E +L   K        G   + AR 
Sbjct: 1047 DKGE---------TPLELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARA 1097

Query: 678  EPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRS 737
               +L  CL  F R E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS
Sbjct: 1098 GHFTLDQCLNLFTRPEVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RS 1156

Query: 738  M--KHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLD 795
               + K+   V FP+ + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L +
Sbjct: 1157 FIWRDKINDLVEFPVRNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPN 1216

Query: 796  ENR-------WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            +         W  FDDS ++ ++E  V +  AYVLFYRR
Sbjct: 1217 DRSSQRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRR 1255


>gi|38148678|gb|AAH60613.1| Ubiquitin specific peptidase 19 [Mus musculus]
          Length = 1360

 Score =  182 bits (461), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 113/292 (38%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 537 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 596

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 597 RALWKGTHQAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 656

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 657 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 716

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + +  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 717 PL-PQKQKVLPIFYFAREPHSKPIKFLVSVSKENSSASEVLDSLSQSVHVK-PENLRLAE 774

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL  +   D L  + +  P+L K + V L++  R Q
Sbjct: 775 VIKNRFHRVFL--PSHSLDAVSPTDVLLCFELLSPELAKERVVVLEVQQRPQ 824



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/339 (32%), Positives = 161/339 (47%), Gaps = 54/339 (15%)

Query: 505  LQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESL 564
            LQL+  + E + GA +          P  S +S  ++++SG I+        P L  E +
Sbjct: 955  LQLVTPVAEGDTGAHRVWPPADRGPVPSTSGLS-SEMLASGPIEGC------PLLAGERV 1007

Query: 565  MHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLS 624
               ++  P          G  HS+ S N              P   +  +D SN    L 
Sbjct: 1008 SRPEAAVP----------GYQHSSESVN-----------THTPQFFIYKIDASNREQRLE 1046

Query: 625  VEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKART 677
             +G+         T + +  D S  L+ + N    E +L   K        G   + AR 
Sbjct: 1047 DKGE---------TPLELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARA 1097

Query: 678  EPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRS 737
               +L  CL  F R E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS
Sbjct: 1098 GHFTLDQCLNLFTRPEVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RS 1156

Query: 738  M--KHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLD 795
               + K+   V FP+ + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L +
Sbjct: 1157 FIWRDKINDLVEFPVRNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPN 1216

Query: 796  ENR-------WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            +         W  FDDS ++ ++E  V +  AYVLFYRR
Sbjct: 1217 DRSSQRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRR 1255


>gi|148689348|gb|EDL21295.1| ubiquitin specific peptidase 19, isoform CRA_c [Mus musculus]
          Length = 1399

 Score =  182 bits (461), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 113/292 (38%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 576 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 635

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 636 RALWKGTHQAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 695

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 696 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 755

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + +  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 756 PL-PQKQKVLPIFYFAREPHSKPIKFLVSVSKENSSASEVLDSLSQSVHVK-PENLRLAE 813

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL  +   D L  + +  P+L K + V L++  R Q
Sbjct: 814 VIKNRFHRVFL--PSHSLDAVSPTDVLLCFELLSPELAKERVVVLEVQQRPQ 863



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/339 (32%), Positives = 161/339 (47%), Gaps = 54/339 (15%)

Query: 505  LQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESL 564
            LQL+  + E + GA +          P  S +S  ++++SG I+        P L  E +
Sbjct: 994  LQLVTPVAEGDTGAHRVWPPADRGPVPSTSGLS-SEMLASGPIEGC------PLLAGERV 1046

Query: 565  MHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLS 624
               ++  P          G  HS+ S N              P   +  +D SN    L 
Sbjct: 1047 SRPEAAVP----------GYQHSSESVN-----------THTPQFFIYKIDASNREQRLE 1085

Query: 625  VEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKART 677
             +G+         T + +  D S  L+ + N    E +L   K        G   + AR 
Sbjct: 1086 DKGE---------TPLELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARA 1136

Query: 678  EPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRS 737
               +L  CL  F R E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS
Sbjct: 1137 GHFTLDQCLNLFTRPEVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RS 1195

Query: 738  M--KHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLD 795
               + K+   V FP+ + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L +
Sbjct: 1196 FIWRDKINDLVEFPVRNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPN 1255

Query: 796  ENR-------WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            +         W  FDDS ++ ++E  V +  AYVLFYRR
Sbjct: 1256 DRSSQRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRR 1294


>gi|444510630|gb|ELV09652.1| Laminin subunit beta-2 [Tupaia chinensis]
          Length = 3008

 Score =  182 bits (461), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 115/292 (39%), Positives = 155/292 (53%), Gaps = 57/292 (19%)

Query: 274  GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
            G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 2154 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 2213

Query: 320  ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                                E +AFLLDGLHEDLNR+++KPY +
Sbjct: 2214 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 2273

Query: 346  SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
            + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 2274 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 2333

Query: 406  PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
            PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 2334 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSSASEVLDSLSQSVHVK-PENLRLAE 2391

Query: 465  IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
            +  +   R FL  P  SL T+   D L  + +  P+L K + V L++  R Q
Sbjct: 2392 VIKNRFHRVFL--PSNSLDTVSPSDVLLCFELLSPELAKERVVVLEVQQRPQ 2441



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 83/206 (40%), Positives = 115/206 (55%), Gaps = 17/206 (8%)

Query: 638  TSIVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFL 690
            T + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F 
Sbjct: 2668 TPLELGEDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFT 2727

Query: 691  REEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNF 748
            R E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V F
Sbjct: 2728 RPEVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEF 2786

Query: 749  PIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYN 801
            P+ + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L  +         W  
Sbjct: 2787 PVRNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPSDRSSQRSDVGWRL 2846

Query: 802  FDDSHISPINEDDVKSAAAYVLFYRR 827
            FDDS ++ ++E  V +  AYVLFYRR
Sbjct: 2847 FDDSTVTTVDESQVVTRYAYVLFYRR 2872


>gi|395748559|ref|XP_002827070.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 43 [Pongo abelii]
          Length = 1106

 Score =  182 bits (461), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 154/594 (25%), Positives = 256/594 (43%), Gaps = 105/594 (17%)

Query: 296 HTPEFARYFR---EDYRREINWQNPLGMVELLAFLLDGLHEDLNRVKHKPYIKSKDADGR 352
           +TP+ +  F+     Y  +    +    +E L +LLD +HEDL      P  +    +  
Sbjct: 142 YTPQLSAEFKNAVSKYGSQFQGNSQHDALEFLLWLLDRVHEDLEGSSRGPVSEKLPPEAT 201

Query: 353 PDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTT 412
              E      A  +    S +    Q QY+S+L CP C K S TFDPF+ +SLP+    T
Sbjct: 202 KTSENCLSPSA-QLPLGQSFVQSHFQAQYRSSLTCPHCLKQSNTFDPFLCVSLPIPLRQT 260

Query: 413 RTMTVT-VFTSD-------GSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAE 464
           R ++VT VF S        G A+P   TV        R ++   G I     ++E+ + E
Sbjct: 261 RFLSVTLVFPSKSQRFLRVGLAVPILSTVAA-----LRKMVAEEGGI----PADEVILVE 311

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRVPK------LVKKAVFLQLIHRLQEQEP- 516
           +     QR F D+    L+TI + D++ A++VP       L    + L +  RL  +E  
Sbjct: 312 LYPSGFQRSFFDE--EDLNTIAEGDNVYAFQVPPSPSPGTLSAHPLGLSVSPRLAAREGQ 369

Query: 517 --------------------GAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLS 556
                               G+ Q  S+   +G P +  I  D  +S  ++Q ++   + 
Sbjct: 370 RFSLSLHSESKVLILFCNLVGSGQQASR---FGPPFL--IREDRAVSWAQLQQSILSKVR 424

Query: 557 PFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDE 616
             +K E+ +                      N  S  +      S A +     L   D 
Sbjct: 425 HLMKSEAPLQ---------------------NLGSLFSIRVVGLSVACSY----LSPKDS 459

Query: 617 SNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEK-YNTHFLENLLEVFKNGPVTKKA 675
             +C   +V+    +R P     + + V+W   + E+ + +   E   +        +  
Sbjct: 460 RPLCH-WAVDRVLHLRRPGGPPHVKLAVEWDSSVKERLFGSLQEERAQDADSVWQQQQAH 518

Query: 676 RTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYS 735
           +    +L  C + + +EE L  +D W CP C+  +Q   KL LW LP++L+IHLKRF   
Sbjct: 519 QQHSCTLDECFQFYTKEEQLAQDDAWKCPHCQVLQQGMVKLSLWTLPDILIIHLKRFCQV 578

Query: 736 RSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQ----------------------LYELY 773
              ++KL T V FP+   N+  +VA +++S                         LY+LY
Sbjct: 579 GERRNKLSTLVKFPLSGLNMAPHVAQRSTSPEAGLGPWPSWKQPDCLPTSYPLDFLYDLY 638

Query: 774 ALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           A+ NH+G +  GHYTA+ +   + +WY++DDS + P+ ED+V +  AY+LFY++
Sbjct: 639 AVCNHHGNLQGGHYTAYCRNSLDGQWYSYDDSTVEPLREDEVNTRGAYILFYQK 692


>gi|338714694|ref|XP_001498305.3| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal
           hydrolase 19 isoform 1 [Equus caballus]
          Length = 1404

 Score =  182 bits (461), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 112/292 (38%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 618 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 677

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 678 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 737

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 738 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 797

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V++ K +    +++  +     +K  E L++ E
Sbjct: 798 PL-PQKQKVLPVFYFAREPHSKPIKFLVSISKENSSASEVLDSISQSVHVK-PENLRLTE 855

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +  P+L K + V L++  R Q
Sbjct: 856 VIKNRFHRVFL--PSHSLDTVSPSDVLLCFELLSPELAKERVVVLEVQQRPQ 905



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 136/264 (51%), Gaps = 27/264 (10%)

Query: 581  PSGEAHSNSSSNIAK-EDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 1083 PAGERVSRPEAAVPGYQHPSEAMNAHTPQFFIYKIDASNREQRLEDKGD---------TP 1133

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
            + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 1134 LELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 1193

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPI 750
            E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+
Sbjct: 1194 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPV 1252

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFD 803
             + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FD
Sbjct: 1253 RNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFD 1312

Query: 804  DSHISPINEDDVKSAAAYVLFYRR 827
            DS ++ ++E  V +  AYVLFYRR
Sbjct: 1313 DSTVTTVDESQVVTRYAYVLFYRR 1336


>gi|147902826|ref|NP_001082871.1| ubiquitin carboxyl-terminal hydrolase 43 [Danio rerio]
 gi|126632447|emb|CAM56644.1| novel protein similar to vertebrate ubiquitin specific protease 43
           (USP43) [Danio rerio]
          Length = 1122

 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 161/638 (25%), Positives = 278/638 (43%), Gaps = 118/638 (18%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFR-EDYRREINWQNPLGMV----------- 321
           G+ GL N GNTCFMN+ +QCL +T   A Y   E Y+ E+N +   GM+           
Sbjct: 112 GVQGLKNHGNTCFMNAVVQCLSNTELLAEYLGLEQYKYELNERRINGMMKSEEVRGEVTD 171

Query: 322 ------------------------------------------ELLAFLLDGLHEDLNRVK 339
                                                     E L +LLD +HED N + 
Sbjct: 172 KLASLVRALWTNDYTPQLSVDFKSVVAKYGSQFKGNAQHDALEFLLWLLDCVHEDAN-LS 230

Query: 340 HKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDP 399
                    +  +P                 S + +  Q QY+S+L CP C K S TFDP
Sbjct: 231 TNNNQSRNSSSSKP-------------GTRHSFVQEHFQAQYRSSLTCPHCLKQSNTFDP 277

Query: 400 FMYLSLPLQATTTRTMTVT-VFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSE 458
           F+ +SLP+    TR + VT VF+++G        + VP  G    L  ++     L   +
Sbjct: 278 FLCISLPIPLRQTRALNVTLVFSTEGQRF-LRIGLAVPLFGSISTLRAMVAEEGKL-SPD 335

Query: 459 ELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGA 518
           ++ + E+ +   QR   D    +++I + D + A++VP    +   ++       + P +
Sbjct: 336 QVILTEMNSGGFQRSFSDE-DDMTSISESDVIYAFQVPPHFTRGGSMRFSDFKGHRLPPS 394

Query: 519 AQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKK-ESLMHADSFDPSSMVT 577
              ++++  +G      +   +V  SG+ Q+T  R   PFL + E  +  D         
Sbjct: 395 GTLSTEFLNHGGSSKVLLLICNVAGSGQ-QAT--RFGPPFLMRVERTLSWDHLQ------ 445

Query: 578 TVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEG---------D 628
                    S  +     +  +  K  T     +++V  S  C  LS            D
Sbjct: 446 --------QSVCNKLYVFQKTAIIKVSTTELFKVRVVGGSASCSYLSPHDSRPLCHPTVD 497

Query: 629 KTIRI--PSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLS--LYT 684
           + +++  P     + + ++W  K+ E    +  E ++E  ++  + ++   +  S  L  
Sbjct: 498 RALKLCGPGGPLHVKLIIEWDNKIKECLFGNIQEEVIEDAESVRIQQQNHVQQHSCTLDD 557

Query: 685 CLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLET 744
           C + + +EE L P+D W CP CK+ +Q   K+ LW LP++L++HLKRF      ++KL T
Sbjct: 558 CFQLYTKEEQLAPDDAWKCPHCKQMQQGMVKMSLWTLPDILILHLKRFRQVGKRRNKLST 617

Query: 745 FVNFPIHDFNLTKYVANKNSSRRQ---------------LYELYALTNHYGGMGSGHYTA 789
            + FP+   ++T +V  ++ S +                LY+LYA+ NH+GGM  GHYTA
Sbjct: 618 LIRFPVSALDMTPHVVKRSQSMKNLAPLPSTWKHGETDFLYDLYAVCNHHGGMHGGHYTA 677

Query: 790 HIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           + +   +  WY++DDS +  + E+++ +  AY+LFY+R
Sbjct: 678 YCRNSVDGHWYSYDDSSVEIVPEEELCTRGAYILFYQR 715


>gi|391344334|ref|XP_003746456.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like
           [Metaseiulus occidentalis]
          Length = 889

 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 197/792 (24%), Positives = 314/792 (39%), Gaps = 163/792 (20%)

Query: 162 HRKHALMNDM---DRTLDDANIQMDQDILV----EVLDNVNGTNCKSSIQDNGFAEKKAS 214
           HR+ A   D+   DR+    N   D+ I        + + NG + K +  +N  +    S
Sbjct: 25  HRRSASERDLVDEDRSGRRQNSPRDRGIFTLPRFPRIKSSNGRSVKYTSLENSTSPVHQS 84

Query: 215 SVLVEPSKSS------LSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTT 268
                 S+S+       SI   +S  +   +N    IS S    S   +D          
Sbjct: 85  PNSARASRSTERKSFLSSIVRSFSVKRTAKKN----ISLSHTDLSRARNDEACDYDKPID 140

Query: 269 RGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF----------------REDY--RR 310
               VGL G+ N GNTC++NS +QCL +T  FA YF                R+ Y  + 
Sbjct: 141 ENPPVGLIGMKNHGNTCYLNSIVQCLSNTDTFAEYFVLNRYQVDLLYSKKSNRKKYGTKG 200

Query: 311 EINWQNPLGMVEL-----------------------------------LAFLLDGLHEDL 335
           E+  Q  L +  L                                   L +LLD +HEDL
Sbjct: 201 EVTEQLALLIKSLWSSTMYPDISAKFKTLVGKYGPQYQGSEQHDAQEFLIWLLDKVHEDL 260

Query: 336 NRVKHKPYIK--SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKV 393
           NR     Y K  SK   G+PDE +A     +H+  N S +  + QGQ+K TL CP+C K 
Sbjct: 261 NRANKTKYKKLDSKGTFGKPDEFLAKRALESHVRCNVSFVQRLFQGQFKLTLTCPLCRKE 320

Query: 394 SVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICS 453
             TFDP++ LSLP+     + + V +    G      + V +      RDL + +   C 
Sbjct: 321 CKTFDPYVCLSLPIPQKLKKLVPVHLVGLTGENRQIEFAVELFDDSTIRDLREKVSEKCR 380

Query: 454 LKQSEELKVAEIQN------------HSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKK 501
           +     L +  + +             SI   L+D    L T  +   +     PK  K 
Sbjct: 381 IPPKHLLFLQMLPDTEGGFGSVYADTDSINSLLED----LKTRGNSKFVTCLETPKPKKT 436

Query: 502 AVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKK 561
               + I  +          T     +G P V  + RD  I    ++  +   +S    +
Sbjct: 437 NEHGEHIMIIWHNR------TPVEGLFGEPYVIQVRRD--IGFKDLRLLMLDTMSDLFCE 488

Query: 562 ESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCF 621
           E+    D F+   +V        +   +     + +  +S  + L   P++         
Sbjct: 489 EA-NEVDGFNERPIVPEFPSQSFSILCADMLPERNEIRASDDLPLYTDPVE--------- 538

Query: 622 DLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKA------ 675
              +     ++ PS +  + + V+W  +L+       +  +LE    GP+  ++      
Sbjct: 539 --HITAVSKVQYPSIAKHLRLLVEWRDELI-------VSKVLE--PPGPLRDESLGGLDE 587

Query: 676 ----RTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKR 731
                T P+ L  CL A+  EE L  E+ W CP C+ R+Q   KLDLW  P++LVIHLKR
Sbjct: 588 LDGETTVPVDLNDCLNAYFSEELLEAEEAWLCPTCERRQQVLSKLDLWTSPDILVIHLKR 647

Query: 732 FSYSRSMKHKLETFVNFPIHDFNLTKYVANK----------------------NSSRRQ- 768
           F      + K+   V+FP    +L+++ A +                      NSS+R  
Sbjct: 648 FKQVNQERSKIYFLVDFPTSGLDLSRFTAQRGESPDLSREREKDTVSTWSPWNNSSQRSP 707

Query: 769 ------------LYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPI-NEDDV 815
                       +Y+LYA+ NH+G M  GHYTA  K      WY++DD+ ++ + +E  +
Sbjct: 708 LRNVDPRNPNNLVYDLYAVCNHHGTMQGGHYTAFCKNPVNGLWYHYDDASVTTVTDESYL 767

Query: 816 KSAAAYVLFYRR 827
            +  AY+LFY+R
Sbjct: 768 ITKDAYILFYQR 779


>gi|28436934|gb|AAH46824.1| Usp19 protein, partial [Mus musculus]
          Length = 929

 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/292 (38%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 143 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 202

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 203 RALWKGTHQAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 262

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 263 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 322

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + +  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 323 PL-PQKQKVLPIFYFAREPHSKPIKFLVSVSKENSSASEVLDSLSQSVHVK-PENLRLAE 380

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL  +   D L  + +  P+L K + V L++  R Q
Sbjct: 381 VIKNRFHRVFL--PSHSLDAVSPTDVLLCFELLSPELAKERVVVLEVQQRPQ 430



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 110/339 (32%), Positives = 161/339 (47%), Gaps = 54/339 (15%)

Query: 505 LQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESL 564
           LQL+  + E + GA +          P  S +S  ++++SG I+        P L  E +
Sbjct: 561 LQLVTPVAEGDTGAHRVWPPADRGPVPSTSGLS-SEMLASGPIEGC------PLLAGERV 613

Query: 565 MHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLS 624
              ++  P          G  HS+ S N              P   +  +D SN    L 
Sbjct: 614 SRPEAAVP----------GYQHSSESVN-----------THTPQFFIYKIDASNREQRLE 652

Query: 625 VEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKART 677
            +G+         T + +  D S  L+ + N    E +L   K        G   + AR 
Sbjct: 653 DKGE---------TPLELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARA 703

Query: 678 EPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRS 737
              +L  CL  F R E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS
Sbjct: 704 GHFTLDQCLNLFTRPEVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RS 762

Query: 738 M--KHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLD 795
              + K+   V FP+ + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L +
Sbjct: 763 FIWRDKINDLVEFPVRNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPN 822

Query: 796 ENR-------WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           +         W  FDDS ++ ++E  V +  AYVLFYRR
Sbjct: 823 DRSSQRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRR 861


>gi|348539075|ref|XP_003457015.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19-like [Oreochromis
            niloticus]
          Length = 1629

 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 116/293 (39%), Positives = 155/293 (52%), Gaps = 59/293 (20%)

Query: 274  GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM------------ 320
            G TGL+NLGNTCFMNS IQ L +T E   YF +  +  EIN  NPLG             
Sbjct: 740  GFTGLVNLGNTCFMNSVIQSLSNTRELRDYFHDRAFEAEINCTNPLGTGGRLAISFAVLL 799

Query: 321  -----------------------------------VELLAFLLDGLHEDLNRVKHKPYIK 345
                                                E +AFLLDGLHEDLNR+++KPY +
Sbjct: 800  RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 859

Query: 346  SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
            + D+DGR DE VA+E W  H  RNDS IVD+ QGQ+KS LVCP C+KVS+TFDPF+YL +
Sbjct: 860  TVDSDGRLDEVVAEEAWQRHKMRNDSFIVDLFQGQFKSKLVCPTCSKVSITFDPFLYLPV 919

Query: 406  PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNIC-SLK-QSEELKVA 463
            PL     + ++V  F  +    P  + V+V K        +VL +I  S++ + E L++A
Sbjct: 920  PL-PQKQKVLSVFYFAKEPHKKPIKFLVSVSKES--SSTAEVLESISRSVRVKPENLRLA 976

Query: 464  EIQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
            E+  +  QR FL  P  SL T+   D L  + V    L K + V L++  +LQ
Sbjct: 977  EVGKNRFQRMFL--PTHSLDTVSSSDMLFCFEVLSKDLAKERVVLLKVQQKLQ 1027



 Score =  152 bits (384), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 76/170 (44%), Positives = 110/170 (64%), Gaps = 12/170 (7%)

Query: 669  GPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIH 728
            G +++ AR    +L  CL  F + E L PE+ WYCP+C++ R+ASK+L LWRLP VL+I 
Sbjct: 1324 GSLSETARAGHFTLEQCLNLFTKPEVLAPEEAWYCPKCQQHREASKQLLLWRLPNVLIIQ 1383

Query: 729  LKRFSYSRSM--KHKLETFVNFPIHDFNLTKYVANKNSSRRQ--LYELYALTNHYGGMGS 784
            LKRFS+ RS   + K+   V+FP+ + +L+K+   +    +Q  +Y+LYA+ NHYGGM  
Sbjct: 1384 LKRFSF-RSFIWRDKINDMVDFPVRNLDLSKFCIGQKDEMQQPPIYDLYAVINHYGGMIG 1442

Query: 785  GHYTAHIKLL-DENR------WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            GHYTA+ +L  D+N       W  FDDS ++ ++E  V +  AYVLFYRR
Sbjct: 1443 GHYTAYARLPSDKNSQRSDVGWRLFDDSTVTMVDESQVVTRYAYVLFYRR 1492


>gi|194390786|dbj|BAG62152.1| unnamed protein product [Homo sapiens]
          Length = 1372

 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 586 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 645

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 646 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 705

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 706 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 765

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 766 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVHVK-PENLRLAE 823

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +   +L K + V L++  R Q
Sbjct: 824 VIKNRFHRVFL--PSHSLDTVSPSDTLLCFELLSSELAKERVVVLEVQQRPQ 873



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 136/264 (51%), Gaps = 27/264 (10%)

Query: 581  PSGEAHSNSSSNIAK-EDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 1051 PAGERVSRPEAAVPGYQHPSEAMNAHTPQFFIYKIDSSNREQRLEDKGD---------TP 1101

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
            + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 1102 LELGDDCSLALVWRNNERLQEFVLVASKELGCAEDPGSAGEAARAGHFTLDQCLNLFTRP 1161

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPI 750
            E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+
Sbjct: 1162 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPV 1220

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFD 803
             + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FD
Sbjct: 1221 RNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFD 1280

Query: 804  DSHISPINEDDVKSAAAYVLFYRR 827
            DS ++ ++E  V +  AYVLFYRR
Sbjct: 1281 DSTVTTVDESQVVTRYAYVLFYRR 1304


>gi|312596875|ref|NP_001186091.1| ubiquitin carboxyl-terminal hydrolase 19 isoform 3 [Homo sapiens]
          Length = 1372

 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 586 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 645

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 646 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 705

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 706 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 765

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 766 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVHVK-PENLRLAE 823

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +   +L K + V L++  R Q
Sbjct: 824 VIKNRFHRVFL--PSHSLDTVSPSDTLLCFELLSSELAKERVVVLEVQQRPQ 873



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 136/264 (51%), Gaps = 27/264 (10%)

Query: 581  PSGEAHSNSSSNIAK-EDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 1051 PAGERVSRPEAAVPGYQHPSEAMNAHTPQFFIYKIDSSNREQRLEDKGD---------TP 1101

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
            + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 1102 LELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 1161

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPI 750
            E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+
Sbjct: 1162 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPV 1220

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFD 803
             + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FD
Sbjct: 1221 RNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFD 1280

Query: 804  DSHISPINEDDVKSAAAYVLFYRR 827
            DS ++ ++E  V +  AYVLFYRR
Sbjct: 1281 DSTVTTVDESQVVTRYAYVLFYRR 1304


>gi|410351351|gb|JAA42279.1| ubiquitin specific peptidase 19 [Pan troglodytes]
          Length = 1386

 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 600 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 659

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 660 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 719

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 720 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 779

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 780 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVHVK-PENLRLAE 837

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +   +L K + V L++  R Q
Sbjct: 838 VIKNRFHRVFL--PSHSLDTVSPSDMLLCFELLSSELAKERVVVLEVQQRPQ 887



 Score =  152 bits (385), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 136/264 (51%), Gaps = 27/264 (10%)

Query: 581  PSGEAHSNSSSNIAK-EDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 1065 PAGERVSRPEAAVPGYQHPSEAMNAHTPLFFIYKIDSSNREQRLEDKGD---------TP 1115

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
            + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 1116 LELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 1175

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPI 750
            E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+
Sbjct: 1176 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPV 1234

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFD 803
             + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FD
Sbjct: 1235 RNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFD 1294

Query: 804  DSHISPINEDDVKSAAAYVLFYRR 827
            DS ++ ++E  V +  AYVLFYRR
Sbjct: 1295 DSTVTTVDESQVVTRYAYVLFYRR 1318


>gi|410225088|gb|JAA09763.1| ubiquitin specific peptidase 19 [Pan troglodytes]
 gi|410351345|gb|JAA42276.1| ubiquitin specific peptidase 19 [Pan troglodytes]
          Length = 1384

 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 598 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 657

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 658 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 717

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 718 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 777

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 778 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVHVK-PENLRLAE 835

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +   +L K + V L++  R Q
Sbjct: 836 VIKNRFHRVFL--PSHSLDTVSPSDMLLCFELLSSELAKERVVVLEVQQRPQ 885



 Score =  152 bits (385), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 136/264 (51%), Gaps = 27/264 (10%)

Query: 581  PSGEAHSNSSSNIAK-EDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 1063 PAGERVSRPEAAVPGYQHPSEAMNAHTPLFFIYKIDSSNREQRLEDKGD---------TP 1113

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
            + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 1114 LELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 1173

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPI 750
            E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+
Sbjct: 1174 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPV 1232

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFD 803
             + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FD
Sbjct: 1233 RNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFD 1292

Query: 804  DSHISPINEDDVKSAAAYVLFYRR 827
            DS ++ ++E  V +  AYVLFYRR
Sbjct: 1293 DSTVTTVDESQVVTRYAYVLFYRR 1316


>gi|332817139|ref|XP_003309900.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19 [Pan
           troglodytes]
          Length = 1372

 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 586 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 645

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 646 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 705

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 706 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 765

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 766 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVHVK-PENLRLAE 823

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +   +L K + V L++  R Q
Sbjct: 824 VIKNRFHRVFL--PSHSLDTVSPSDMLLCFELLSSELAKERVVVLEVQQRPQ 873



 Score =  152 bits (384), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 136/264 (51%), Gaps = 27/264 (10%)

Query: 581  PSGEAHSNSSSNIAK-EDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 1051 PAGERVSRPEAAVPGYQHPSEAMNAHTPLFFIYKIDSSNREQRLEDKGD---------TP 1101

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
            + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 1102 LELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 1161

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPI 750
            E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+
Sbjct: 1162 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPV 1220

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFD 803
             + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FD
Sbjct: 1221 RNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFD 1280

Query: 804  DSHISPINEDDVKSAAAYVLFYRR 827
            DS ++ ++E  V +  AYVLFYRR
Sbjct: 1281 DSTVTTVDESQVVTRYAYVLFYRR 1304


>gi|332215894|ref|XP_003257077.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19 isoform 1
           [Nomascus leucogenys]
          Length = 1384

 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 598 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 657

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 658 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 717

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 718 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 777

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 778 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVHVK-PENLRLAE 835

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +   +L K + V L++  R Q
Sbjct: 836 VIKNRFHRVFL--PSHSLDTVSPSDMLLCFELLSSELAKERVVVLEVQQRPQ 885



 Score =  152 bits (385), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 82/199 (41%), Positives = 113/199 (56%), Gaps = 17/199 (8%)

Query: 645  DWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLREEPLVP 697
            D S  L+ + N    E +L   K        G   + AR    +L  CL  F R E L P
Sbjct: 1119 DCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRPEVLAP 1178

Query: 698  EDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPIHDFNL 755
            E+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+ + +L
Sbjct: 1179 EEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPVRNLDL 1237

Query: 756  TKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFDDSHIS 808
            +K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FDDS ++
Sbjct: 1238 SKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFDDSTVT 1297

Query: 809  PINEDDVKSAAAYVLFYRR 827
             ++E  V +  AYVLFYRR
Sbjct: 1298 TVDESQVVTRYAYVLFYRR 1316


>gi|410225092|gb|JAA09765.1| ubiquitin specific peptidase 19 [Pan troglodytes]
 gi|410351349|gb|JAA42278.1| ubiquitin specific peptidase 19 [Pan troglodytes]
          Length = 1382

 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 596 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 655

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 656 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 715

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 716 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 775

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 776 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVHVK-PENLRLAE 833

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +   +L K + V L++  R Q
Sbjct: 834 VIKNRFHRVFL--PSHSLDTVSPSDMLLCFELLSSELAKERVVVLEVQQRPQ 883



 Score =  152 bits (384), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 136/264 (51%), Gaps = 27/264 (10%)

Query: 581  PSGEAHSNSSSNIAK-EDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 1061 PAGERVSRPEAAVPGYQHPSEAMNAHTPLFFIYKIDSSNREQRLEDKGD---------TP 1111

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
            + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 1112 LELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 1171

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPI 750
            E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+
Sbjct: 1172 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPV 1230

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFD 803
             + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FD
Sbjct: 1231 RNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFD 1290

Query: 804  DSHISPINEDDVKSAAAYVLFYRR 827
            DS ++ ++E  V +  AYVLFYRR
Sbjct: 1291 DSTVTTVDESQVVTRYAYVLFYRR 1314


>gi|410263404|gb|JAA19668.1| ubiquitin specific peptidase 19 [Pan troglodytes]
 gi|410296340|gb|JAA26770.1| ubiquitin specific peptidase 19 [Pan troglodytes]
          Length = 1382

 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 596 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 655

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 656 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 715

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 716 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 775

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 776 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVHVK-PENLRLAE 833

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +   +L K + V L++  R Q
Sbjct: 834 VIKNRFHRVFL--PSHSLDTVSPSDMLLCFELLSSELAKERVVVLEVQQRPQ 883



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 136/264 (51%), Gaps = 27/264 (10%)

Query: 581  PSGEAHSNSSSNIAK-EDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 1061 PAGERVSRPEAAVPGYQHPSEAMNAHTPLFFIYKIDSSNREQRLEDKGD---------TP 1111

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
            + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 1112 LELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 1171

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPI 750
            E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+
Sbjct: 1172 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPV 1230

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFD 803
             + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FD
Sbjct: 1231 RNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFD 1290

Query: 804  DSHISPINEDDVKSAAAYVLFYRR 827
            DS ++ ++E  V +  AYVLFYRR
Sbjct: 1291 DSTVTTVDESQVVTRYAYVLFYRR 1314


>gi|410263406|gb|JAA19669.1| ubiquitin specific peptidase 19 [Pan troglodytes]
 gi|410296342|gb|JAA26771.1| ubiquitin specific peptidase 19 [Pan troglodytes]
          Length = 1386

 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 600 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 659

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 660 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 719

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 720 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 779

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 780 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVHVK-PENLRLAE 837

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +   +L K + V L++  R Q
Sbjct: 838 VIKNRFHRVFL--PSHSLDTVSPSDMLLCFELLSSELAKERVVVLEVQQRPQ 887



 Score =  152 bits (384), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 136/264 (51%), Gaps = 27/264 (10%)

Query: 581  PSGEAHSNSSSNIAK-EDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 1065 PAGERVSRPEAAVPGYQHPSEAMNAHTPLFFIYKIDSSNREQRLEDKGD---------TP 1115

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
            + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 1116 LELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 1175

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPI 750
            E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+
Sbjct: 1176 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPV 1234

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFD 803
             + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FD
Sbjct: 1235 RNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFD 1294

Query: 804  DSHISPINEDDVKSAAAYVLFYRR 827
            DS ++ ++E  V +  AYVLFYRR
Sbjct: 1295 DSTVTTVDESQVVTRYAYVLFYRR 1318


>gi|332817137|ref|XP_003309899.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19 [Pan
           troglodytes]
 gi|410263400|gb|JAA19666.1| ubiquitin specific peptidase 19 [Pan troglodytes]
 gi|410296336|gb|JAA26768.1| ubiquitin specific peptidase 19 [Pan troglodytes]
          Length = 1384

 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 598 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 657

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 658 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 717

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 718 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 777

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 778 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVHVK-PENLRLAE 835

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +   +L K + V L++  R Q
Sbjct: 836 VIKNRFHRVFL--PSHSLDTVSPSDMLLCFELLSSELAKERVVVLEVQQRPQ 885



 Score =  152 bits (385), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 136/264 (51%), Gaps = 27/264 (10%)

Query: 581  PSGEAHSNSSSNIAK-EDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 1063 PAGERVSRPEAAVPGYQHPSEAMNAHTPLFFIYKIDSSNREQRLEDKGD---------TP 1113

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
            + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 1114 LELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 1173

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPI 750
            E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+
Sbjct: 1174 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPV 1232

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFD 803
             + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FD
Sbjct: 1233 RNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFD 1292

Query: 804  DSHISPINEDDVKSAAAYVLFYRR 827
            DS ++ ++E  V +  AYVLFYRR
Sbjct: 1293 DSTVTTVDESQVVTRYAYVLFYRR 1316


>gi|332215896|ref|XP_003257078.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19 isoform 2
           [Nomascus leucogenys]
          Length = 1372

 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 586 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 645

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 646 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 705

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 706 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 765

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 766 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVHVK-PENLRLAE 823

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +   +L K + V L++  R Q
Sbjct: 824 VIKNRFHRVFL--PSHSLDTVSPSDMLLCFELLSSELAKERVVVLEVQQRPQ 873



 Score =  152 bits (384), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 82/199 (41%), Positives = 113/199 (56%), Gaps = 17/199 (8%)

Query: 645  DWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLREEPLVP 697
            D S  L+ + N    E +L   K        G   + AR    +L  CL  F R E L P
Sbjct: 1107 DCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRPEVLAP 1166

Query: 698  EDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPIHDFNL 755
            E+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+ + +L
Sbjct: 1167 EEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPVRNLDL 1225

Query: 756  TKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFDDSHIS 808
            +K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FDDS ++
Sbjct: 1226 SKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFDDSTVT 1285

Query: 809  PINEDDVKSAAAYVLFYRR 827
             ++E  V +  AYVLFYRR
Sbjct: 1286 TVDESQVVTRYAYVLFYRR 1304


>gi|312596873|ref|NP_001186090.1| ubiquitin carboxyl-terminal hydrolase 19 isoform 2 [Homo sapiens]
          Length = 1384

 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 598 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 657

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 658 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 717

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 718 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 777

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 778 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVHVK-PENLRLAE 835

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +   +L K + V L++  R Q
Sbjct: 836 VIKNRFHRVFL--PSHSLDTVSPSDTLLCFELLSSELAKERVVVLEVQQRPQ 885



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 136/264 (51%), Gaps = 27/264 (10%)

Query: 581  PSGEAHSNSSSNIAK-EDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 1063 PAGERVSRPEAAVPGYQHPSEAMNAHTPQFFIYKIDSSNREQRLEDKGD---------TP 1113

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
            + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 1114 LELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 1173

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPI 750
            E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+
Sbjct: 1174 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPV 1232

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFD 803
             + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FD
Sbjct: 1233 RNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFD 1292

Query: 804  DSHISPINEDDVKSAAAYVLFYRR 827
            DS ++ ++E  V +  AYVLFYRR
Sbjct: 1293 DSTVTTVDESQVVTRYAYVLFYRR 1316


>gi|332215898|ref|XP_003257079.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19 isoform 3
           [Nomascus leucogenys]
          Length = 1419

 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 596 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 655

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 656 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 715

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 716 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 775

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 776 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVHVK-PENLRLAE 833

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +   +L K + V L++  R Q
Sbjct: 834 VIKNRFHRVFL--PSHSLDTVSPSDMLLCFELLSSELAKERVVVLEVQQRPQ 883



 Score =  152 bits (385), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 82/199 (41%), Positives = 113/199 (56%), Gaps = 17/199 (8%)

Query: 645  DWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLREEPLVP 697
            D S  L+ + N    E +L   K        G   + AR    +L  CL  F R E L P
Sbjct: 1117 DCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRPEVLAP 1176

Query: 698  EDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPIHDFNL 755
            E+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+ + +L
Sbjct: 1177 EEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPVRNLDL 1235

Query: 756  TKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFDDSHIS 808
            +K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FDDS ++
Sbjct: 1236 SKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFDDSTVT 1295

Query: 809  PINEDDVKSAAAYVLFYRR 827
             ++E  V +  AYVLFYRR
Sbjct: 1296 TVDESQVVTRYAYVLFYRR 1314


>gi|397495156|ref|XP_003818426.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19 isoform 1 [Pan
           paniscus]
          Length = 1419

 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 596 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 655

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 656 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 715

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 716 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 775

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 776 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVHVK-PENLRLAE 833

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +   +L K + V L++  R Q
Sbjct: 834 VIKNRFHRVFL--PSHSLDTVSPSDMLLCFELLSSELAKERVVVLEVQQRPQ 883



 Score =  152 bits (385), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 136/264 (51%), Gaps = 27/264 (10%)

Query: 581  PSGEAHSNSSSNIAK-EDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 1061 PAGERVSRPEAAVPGYQHPSEAMNAHTPLFFIYKIDSSNREQRLEDKGD---------TP 1111

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
            + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 1112 LELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 1171

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPI 750
            E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+
Sbjct: 1172 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPV 1230

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFD 803
             + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FD
Sbjct: 1231 RNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFD 1290

Query: 804  DSHISPINEDDVKSAAAYVLFYRR 827
            DS ++ ++E  V +  AYVLFYRR
Sbjct: 1291 DSTVTTVDESQVVTRYAYVLFYRR 1314


>gi|384483897|gb|EIE76077.1| hypothetical protein RO3G_00781 [Rhizopus delemar RA 99-880]
          Length = 1037

 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 155/550 (28%), Positives = 242/550 (44%), Gaps = 98/550 (17%)

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYG-GGPTLARKVISSGLSQTELAVEVYPLRLQLLV 119
           ++D+L+       +P+  W  L  WYG     + R VI    S   L VE+YP   +L +
Sbjct: 84  LMDSLILDESVFAVPEAAWKDLAEWYGVDSEPIERLVIKK--SDGSLTVELYPPIFKLFI 141

Query: 120 MPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDA- 178
           +     ++   S + T+ E                           + +ND+  T+ ++ 
Sbjct: 142 VSDVTLASFNRSPRFTLSET--------------------------STINDLLLTIRESL 175

Query: 179 NIQMDQDILVEVL-DNVNG-TNCKSSIQDNGFAEKKASSVLVEPSKS---SLSIAGGWSA 233
           ++  + ++ + +L D  N  T   +S+Q+    +    SV++  S     ++ I G    
Sbjct: 176 DLSQNAELQIWLLSDEPNSPTIASNSLQNATLIDTNNQSVILSRSGQFNIAVVIKGDARF 235

Query: 234 SKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGAS-------VGLTGLLNLGNTCF 286
              T   HS   S S   +   +  N+L +S   +   S        G+ GL NLGNTCF
Sbjct: 236 PAETFIKHSDSSSISSTSSIFANGFNSLTASSTESTPTSGLYPKFARGVCGLHNLGNTCF 295

Query: 287 MNSAIQCLVHTPEFARYF-----REDYRREINWQNPLGM-----------VELL------ 324
           MNSA+QCL +TP   ++F     +     ++   NPLGM           +E L      
Sbjct: 296 MNSALQCLSNTPNLTKWFLGMGKKTRVLEKLITDNPLGMNGQVAESYGELIEKLWSGNAQ 355

Query: 325 -------AFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVC 377
                   + +DGLHEDLNR+  KPYI+  D DG  D+E+A+  W  H ARNDS+IVD+ 
Sbjct: 356 SYTPRDFKYTIDGLHEDLNRIIKKPYIELPDFDGMKDKEIAERSWNYHRARNDSVIVDLF 415

Query: 378 QGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPK 437
           QGQ+KSTL+C  C  VSVTFDPFMYLSLPL        TV     D +       +T+ K
Sbjct: 416 QGQFKSTLICAECKNVSVTFDPFMYLSLPLPIERKCKKTVVYVPYDPTQRMQRVVLTLNK 475

Query: 438 HGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYR--- 494
                 L + +  I S+K +  L V EI +H I +      + ++ I + D +  Y+   
Sbjct: 476 DADIAQLQKEVAKIMSVKDASTLLVVEIFSHKIYKVFSHYEV-VARIGNSDLIYVYQLPG 534

Query: 495 -VPKLVKKAVFLQLIHRLQEQEPGAAQ----------------------TTSQWKAYGTP 531
            VP + KK      ++   E +   A+                      ++ Q + +G P
Sbjct: 535 PVPSISKKKTVSYRLYNHNEDDLDTAEAEDNNQLVVFPVYCATVESHDTSSGQPQQFGNP 594

Query: 532 LVSSISRDDV 541
            V ++SR D 
Sbjct: 595 FVVAVSRSDA 604



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 49/107 (45%), Positives = 73/107 (68%), Gaps = 5/107 (4%)

Query: 676  RTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYS 735
            + + L+L  CL+ F +EE L  ED+WYCP+CK+ + A KK DLW +PE+LV+HLKRFS+S
Sbjct: 904  KKKQLTLSDCLDEFTKEEELSEEDLWYCPKCKKHQMAIKKFDLWHMPEILVVHLKRFSHS 963

Query: 736  RSMKHKLETFVNFPIHDFNLTKYV-----ANKNSSRRQLYELYALTN 777
            R+ + K++T ++FPI + +LT  V        N   R +Y+LYA+ N
Sbjct: 964  RTWRDKIDTLIDFPIEELDLTDRVLSVDKETVNEENRLIYDLYAVDN 1010


>gi|119585361|gb|EAW64957.1| ubiquitin specific peptidase 19, isoform CRA_b [Homo sapiens]
          Length = 1283

 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 497 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 556

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 557 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 616

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 617 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 676

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 677 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVHVK-PENLRLAE 734

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +   +L K + V L++  R Q
Sbjct: 735 VIKNRFHRVFL--PSHSLDTVSPSDTLLCFELLSSELAKERVVVLEVQQRPQ 784



 Score =  154 bits (388), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 136/264 (51%), Gaps = 27/264 (10%)

Query: 581  PSGEAHSNSSSNIAK-EDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 962  PAGERVSRPEAAVPGYQHPSEAMNAHTPQFFIYKIDSSNREQRLEDKGD---------TP 1012

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
            + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 1013 LELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 1072

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPI 750
            E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+
Sbjct: 1073 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPV 1131

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFD 803
             + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FD
Sbjct: 1132 RNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFD 1191

Query: 804  DSHISPINEDDVKSAAAYVLFYRR 827
            DS ++ ++E  V +  AYVLFYRR
Sbjct: 1192 DSTVTTVDESQVVTRYAYVLFYRR 1215


>gi|332817141|ref|XP_003309901.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19 [Pan
           troglodytes]
          Length = 1419

 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 596 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 655

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 656 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 715

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 716 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 775

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 776 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVHVK-PENLRLAE 833

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +   +L K + V L++  R Q
Sbjct: 834 VIKNRFHRVFL--PSHSLDTVSPSDMLLCFELLSSELAKERVVVLEVQQRPQ 883



 Score =  152 bits (385), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 136/264 (51%), Gaps = 27/264 (10%)

Query: 581  PSGEAHSNSSSNIAK-EDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 1061 PAGERVSRPEAAVPGYQHPSEAMNAHTPLFFIYKIDSSNREQRLEDKGD---------TP 1111

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
            + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 1112 LELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 1171

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPI 750
            E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+
Sbjct: 1172 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPV 1230

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFD 803
             + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FD
Sbjct: 1231 RNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFD 1290

Query: 804  DSHISPINEDDVKSAAAYVLFYRR 827
            DS ++ ++E  V +  AYVLFYRR
Sbjct: 1291 DSTVTTVDESQVVTRYAYVLFYRR 1314


>gi|410263402|gb|JAA19667.1| ubiquitin specific peptidase 19 [Pan troglodytes]
 gi|410296338|gb|JAA26769.1| ubiquitin specific peptidase 19 [Pan troglodytes]
          Length = 1421

 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 598 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 657

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 658 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 717

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 718 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 777

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 778 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVHVK-PENLRLAE 835

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +   +L K + V L++  R Q
Sbjct: 836 VIKNRFHRVFL--PSHSLDTVSPSDMLLCFELLSSELAKERVVVLEVQQRPQ 885



 Score =  152 bits (385), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 136/264 (51%), Gaps = 27/264 (10%)

Query: 581  PSGEAHSNSSSNIAK-EDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 1063 PAGERVSRPEAAVPGYQHPSEAMNAHTPLFFIYKIDSSNREQRLEDKGD---------TP 1113

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
            + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 1114 LELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 1173

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPI 750
            E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+
Sbjct: 1174 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPV 1232

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFD 803
             + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FD
Sbjct: 1233 RNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFD 1292

Query: 804  DSHISPINEDDVKSAAAYVLFYRR 827
            DS ++ ++E  V +  AYVLFYRR
Sbjct: 1293 DSTVTTVDESQVVTRYAYVLFYRR 1316


>gi|410225090|gb|JAA09764.1| ubiquitin specific peptidase 19 [Pan troglodytes]
 gi|410351347|gb|JAA42277.1| ubiquitin specific peptidase 19 [Pan troglodytes]
          Length = 1421

 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 598 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 657

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 658 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 717

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 718 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 777

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 778 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVHVK-PENLRLAE 835

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +   +L K + V L++  R Q
Sbjct: 836 VIKNRFHRVFL--PSHSLDTVSPSDMLLCFELLSSELAKERVVVLEVQQRPQ 885



 Score =  152 bits (385), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 136/264 (51%), Gaps = 27/264 (10%)

Query: 581  PSGEAHSNSSSNIAK-EDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 1063 PAGERVSRPEAAVPGYQHPSEAMNAHTPLFFIYKIDSSNREQRLEDKGD---------TP 1113

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
            + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 1114 LELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 1173

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPI 750
            E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+
Sbjct: 1174 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPV 1232

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFD 803
             + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FD
Sbjct: 1233 RNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFD 1292

Query: 804  DSHISPINEDDVKSAAAYVLFYRR 827
            DS ++ ++E  V +  AYVLFYRR
Sbjct: 1293 DSTVTTVDESQVVTRYAYVLFYRR 1316


>gi|148744351|gb|AAI42661.1| USP19 protein [Homo sapiens]
          Length = 1447

 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 661 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 720

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 721 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 780

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 781 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 840

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 841 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVHVK-PENLRLAE 898

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +   +L K + V L++  R Q
Sbjct: 899 VIKNRFHRVFL--PSHSLDTVSPSDTLLCFELLSSELAKERVVVLEVQQRPQ 948



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 136/264 (51%), Gaps = 27/264 (10%)

Query: 581  PSGEAHSNSSSNIAK-EDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 1126 PAGERVSRPEAAVPGYQHPSEAMNAHTPQFFIYKIDSSNREQRLEDKGD---------TP 1176

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
            + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 1177 LELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 1236

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPI 750
            E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+
Sbjct: 1237 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPV 1295

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFD 803
             + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FD
Sbjct: 1296 RNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFD 1355

Query: 804  DSHISPINEDDVKSAAAYVLFYRR 827
            DS ++ ++E  V +  AYVLFYRR
Sbjct: 1356 DSTVTTVDESQVVTRYAYVLFYRR 1379


>gi|348584974|ref|XP_003478247.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 31-like [Cavia
           porcellus]
          Length = 1192

 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 152/564 (26%), Positives = 241/564 (42%), Gaps = 88/564 (15%)

Query: 322 ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQY 381
           E L +LLD +HEDLN        +S     +P  E              + + ++ Q QY
Sbjct: 71  EFLLWLLDRVHEDLNHA----VKQSGQPPLKPPSETDMMPEGPSFPVCSTFVQELFQAQY 126

Query: 382 KSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHG-- 439
           +S+L CP C K S TFDPF+ +SLP+    TR + VTV      +      V VP  G  
Sbjct: 127 RSSLTCPHCQKQSNTFDPFLCISLPIPLPHTRPLYVTVVYQGKCSHCMRIGVAVPLSGTV 186

Query: 440 -RCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKL 498
            R R+ + +   I     ++++ + E+      R   D    L T+ + D + A+  P++
Sbjct: 187 ARLREAVSMETKI----PTDQIVLTEMYYDGFHRSFCD-TDDLETVHESDCIFAFETPEI 241

Query: 499 VKKAVFLQLI-----------------HRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDV 541
            +    L                    HRL      AAQTT++      P   + S   V
Sbjct: 242 FRPEGILSQRGIHLNNNLNHLKFGLDHHRLS----SAAQTTAKQGKVDQPATRAASDKIV 297

Query: 542 ISSGKIQSTVQ---RMLSPF------------LKKESLMHADSFDPSSMVTTVDPSGEAH 586
           +       T Q   R   PF            L+KE L     F   ++   V P     
Sbjct: 298 LLVCNRACTGQQGKRFGLPFVLHLEKTVAWDVLQKEILEKMKYFLRPTVCIQVCPF---- 353

Query: 587 SNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDW 646
                        S + V++  +   L  E       +VE       P  +  + + V+W
Sbjct: 354 -------------SLRVVSVVGITYLLPQEEQPLCHPTVERALKSCGPGGTAHVKLVVEW 400

Query: 647 SQKLLEKYNTHFLENLLEVFKNGPVTKKARTEP--LSLYTCLEAFLREEPLVPEDMWYCP 704
            ++  +    +  +  +   ++  + K+   +P   +L  C + + +EE L P+D W CP
Sbjct: 401 DKETKDFLFINTEDEYIPDSESVRLQKERHHQPQTCTLSQCFQLYTKEERLAPDDAWRCP 460

Query: 705 QCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNS 764
            CK+ +Q S  L LW LP+VL+IHLKRF      + KL+  V FP++  ++T +V  ++ 
Sbjct: 461 HCKQLQQGSITLSLWTLPDVLIIHLKRFRQEGDKRMKLQNMVKFPLNGLDMTPHVVKRSQ 520

Query: 765 S-----------RRQ----------LYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFD 803
           S           RR           +Y+LYA+ NH+G M  GHYTA+ K   +  WY FD
Sbjct: 521 SSWSLPSHWSPWRRPYGLGRDPEDYIYDLYAVCNHHGTMQGGHYTAYCKNSVDGLWYCFD 580

Query: 804 DSHISPINEDDVKSAAAYVLFYRR 827
           DS +  ++ED+V +  AY+LFY+R
Sbjct: 581 DSDVQQLSEDEVCTQTAYILFYQR 604


>gi|426340514|ref|XP_004034174.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19 isoform 1
           [Gorilla gorilla gorilla]
          Length = 1384

 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 598 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 657

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 658 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 717

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 718 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 777

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 778 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVHVK-PENLRLAE 835

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +   +L K + V L++  R Q
Sbjct: 836 VIKNRFHRVFL--PSHSLDTVSPSDVLLCFELLSSELAKERVVVLEVQQRPQ 885



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 136/264 (51%), Gaps = 27/264 (10%)

Query: 581  PSGEAHSNSSSNIAK-EDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 1063 PAGERVSRPEAAVPGYQHPSEAMNAHTPQFFIYKIDSSNREQRLEDKGD---------TP 1113

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
            + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 1114 LELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 1173

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPI 750
            E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+
Sbjct: 1174 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPV 1232

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFD 803
             + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FD
Sbjct: 1233 RNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFD 1292

Query: 804  DSHISPINEDDVKSAAAYVLFYRR 827
            DS ++ ++E  V +  AYVLFYRR
Sbjct: 1293 DSTVTTVDESQVVTRYAYVLFYRR 1316


>gi|148685303|gb|EDL17250.1| mCG67204 [Mus musculus]
          Length = 1211

 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 152/608 (25%), Positives = 252/608 (41%), Gaps = 111/608 (18%)

Query: 290 AIQCLVHTPEFARYFREDYRR---EINWQNPLGMVELLAFLLDGLHEDLNRVKHKPYIKS 346
           A+  L +TP+ +R F+    +   +    +     E L +LLD +HEDLN        +S
Sbjct: 58  ALWTLEYTPQHSRDFKSIVSKNALQYRGNSQHDAQEFLLWLLDRVHEDLNHA----VKQS 113

Query: 347 KDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLP 406
                +P  E  D           + + ++ Q QY+S+L CP C K S TFDPF+ +SLP
Sbjct: 114 GQPPLKPPSET-DMMPEGPFPVCSTFVQELFQAQYRSSLTCPHCQKQSNTFDPFLCISLP 172

Query: 407 LQATTTRTMTVTVFTSDGSALPSTYTVTVPKHG---RCRDLIQVLGNICSLKQSEELKVA 463
           +    TR + VTV      +      V VP  G   R R+ + +   I     ++++ + 
Sbjct: 173 IPLPHTRPLYVTVVYQGKCSHCMRIGVAVPLSGTVARLREAVSMETKI----PTDQIVLT 228

Query: 464 EIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLI--------------- 508
           E+      R   D    L T+ + D + A+  P++ +    L                  
Sbjct: 229 EMYYDGFHRSFSD-TDDLETVHESDCIFAFETPEIFRPEGILSQRGIHLNNNLNHLKFGL 287

Query: 509 --HRLQEQEPGAAQ------------------------TTSQWKAYGTPLVSSISRDDVI 542
             HRL    P AA+                        T  Q K +G P V  +  +  +
Sbjct: 288 DHHRLSSPAPTAAKQGRVDLPTRVASDKIVLLVCNRACTGQQGKRFGLPFV--LHLEKTV 345

Query: 543 SSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSK 602
           +   +Q  +   +  FL+    +    F                             S +
Sbjct: 346 AWDLLQKEILEKMKYFLRPTVSIQVCPF-----------------------------SLR 376

Query: 603 AVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENL 662
            V++  +   L  E       +VE       P  +  + + V+W ++  +    +  +  
Sbjct: 377 VVSVVGITYLLPQEEQPLCHPTVERALKSCGPGGTAHVKLVVEWDKETKDFLFVNTEDEY 436

Query: 663 LEVFKNGPVTKKARTEP--LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWR 720
           +   ++  + K+   +P   +L  C + + +EE L P+D W CP CK+ +Q S  L LW 
Sbjct: 437 IPDAESVRLQKEQHHQPQTCTLSQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWT 496

Query: 721 LPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSS-----------RRQ- 768
           LP+VL+IHLKRF      + KL+  V FP+   ++T +V  ++ S           RR  
Sbjct: 497 LPDVLIIHLKRFRQEGDRRMKLQNMVKFPLTGLDMTPHVVKRSQSSWSLPSHWSPWRRPY 556

Query: 769 ---------LYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAA 819
                    +Y+LYA+ NH+G M  GHYTA+ K   +  WY FDDS +  ++ED+V +  
Sbjct: 557 GLGRDPEDYIYDLYAVCNHHGTMQGGHYTAYCKNSVDGLWYCFDDSDVQQLSEDEVCTQT 616

Query: 820 AYVLFYRR 827
           AY+LFY+R
Sbjct: 617 AYILFYQR 624


>gi|148745123|gb|AAI42728.1| USP19 protein [Homo sapiens]
          Length = 1449

 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 663 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 722

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 723 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 782

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 783 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 842

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 843 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVHVK-PENLRLAE 900

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +   +L K + V L++  R Q
Sbjct: 901 VIKNRFHRVFL--PSHSLDTVSPSDTLLCFELLSSELAKERVVVLEVQQRPQ 950



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 136/264 (51%), Gaps = 27/264 (10%)

Query: 581  PSGEAHSNSSSNIAK-EDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 1128 PAGERVSRPEAAVPGYQHPSEAMNAHTPQFFIYKIDSSNREQRLEDKGD---------TP 1178

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
            + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 1179 LELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 1238

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPI 750
            E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+
Sbjct: 1239 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPV 1297

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFD 803
             + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FD
Sbjct: 1298 RNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFD 1357

Query: 804  DSHISPINEDDVKSAAAYVLFYRR 827
            DS ++ ++E  V +  AYVLFYRR
Sbjct: 1358 DSTVTTVDESQVVTRYAYVLFYRR 1381


>gi|431913411|gb|ELK15086.1| Ubiquitin carboxyl-terminal hydrolase 19 [Pteropus alecto]
          Length = 1394

 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 113/292 (38%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 539 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 598

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 599 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 658

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 659 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 718

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + +  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 719 PL-PQKQKVLPIFYFAREPHSKPIKFLVSVSKENSSASEVLDSLSQSVHVK-PENLRLAE 776

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +   +L K + V L++  R Q
Sbjct: 777 VIKNRFHRVFL--PSHSLDTVSPSDMLLCFELLSQELAKERVVVLEVQQRPQ 826



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/264 (35%), Positives = 136/264 (51%), Gaps = 27/264 (10%)

Query: 581  PSGEAHSNSSSNIAK-EDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 1005 PAGERVSRPEAAVPGYQHPSEAMNSHTPQFFIYKIDASNREQRLEDKGD---------TP 1055

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
            + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 1056 LELGDDCSLALVWRNNERLPEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 1115

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPI 750
            E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+
Sbjct: 1116 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPV 1174

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFD 803
             + +L+K+   +   +   Y+LYA+ +HYGGM  GHYTA  +L ++         W  FD
Sbjct: 1175 RNLDLSKFCIGQKEEQLPSYDLYAVISHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFD 1234

Query: 804  DSHISPINEDDVKSAAAYVLFYRR 827
            DS ++ ++E  V +  AYVLFYRR
Sbjct: 1235 DSTVTTVDESQVVTRYAYVLFYRR 1258


>gi|312596871|ref|NP_001186089.1| ubiquitin carboxyl-terminal hydrolase 19 isoform 1 [Homo sapiens]
          Length = 1419

 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 596 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 655

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 656 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 715

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 716 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 775

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 776 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVHVK-PENLRLAE 833

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +   +L K + V L++  R Q
Sbjct: 834 VIKNRFHRVFL--PSHSLDTVSPSDTLLCFELLSSELAKERVVVLEVQQRPQ 883



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 136/264 (51%), Gaps = 27/264 (10%)

Query: 581  PSGEAHSNSSSNIAK-EDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 1061 PAGERVSRPEAAVPGYQHPSEAMNAHTPQFFIYKIDSSNREQRLEDKGD---------TP 1111

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
            + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 1112 LELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 1171

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPI 750
            E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+
Sbjct: 1172 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPV 1230

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFD 803
             + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FD
Sbjct: 1231 RNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFD 1290

Query: 804  DSHISPINEDDVKSAAAYVLFYRR 827
            DS ++ ++E  V +  AYVLFYRR
Sbjct: 1291 DSTVTTVDESQVVTRYAYVLFYRR 1314


>gi|426340516|ref|XP_004034175.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19 isoform 2
           [Gorilla gorilla gorilla]
          Length = 1372

 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 586 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 645

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 646 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 705

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 706 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 765

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 766 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVHVK-PENLRLAE 823

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +   +L K + V L++  R Q
Sbjct: 824 VIKNRFHRVFL--PSHSLDTVSPSDVLLCFELLSSELAKERVVVLEVQQRPQ 873



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 136/264 (51%), Gaps = 27/264 (10%)

Query: 581  PSGEAHSNSSSNIAK-EDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 1051 PAGERVSRPEAAVPGYQHPSEAMNAHTPQFFIYKIDSSNREQRLEDKGD---------TP 1101

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
            + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 1102 LELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 1161

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPI 750
            E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+
Sbjct: 1162 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPV 1220

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFD 803
             + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FD
Sbjct: 1221 RNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFD 1280

Query: 804  DSHISPINEDDVKSAAAYVLFYRR 827
            DS ++ ++E  V +  AYVLFYRR
Sbjct: 1281 DSTVTTVDESQVVTRYAYVLFYRR 1304


>gi|355727922|gb|AES09355.1| ubiquitin specific peptidase 19 [Mustela putorius furo]
          Length = 1009

 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 113/292 (38%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 261 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 320

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 321 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 380

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+ L +
Sbjct: 381 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLSLPV 440

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V++ K +    +++  L     +K  E L++AE
Sbjct: 441 PL-PQKQKVLPVFYFAREPHSKPIKFLVSISKENSSASEVLDSLSQSVHVK-PENLRLAE 498

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +  P+L K + V L++  R Q
Sbjct: 499 VIKNRFHRVFL--PSHSLDTVSPSDTLLCFELLSPELAKERVVVLEVQQRPQ 548



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 94/264 (35%), Positives = 135/264 (51%), Gaps = 27/264 (10%)

Query: 581 PSGEAHSNSSSNI-AKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
           P+GE  S   + +   +  S +     P   +  +D SN    L  +GD  + +      
Sbjct: 726 PAGERVSRPEAAVPGYQHPSEATNAHTPQFFIYKIDASNREQRLEDKGDSPLELGE---- 781

Query: 640 IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
                D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 782 -----DCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 836

Query: 693 EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPI 750
           E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+
Sbjct: 837 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPV 895

Query: 751 HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFD 803
            + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FD
Sbjct: 896 RNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFD 955

Query: 804 DSHISPINEDDVKSAAAYVLFYRR 827
           DS ++ ++E  V +  AYVLFYRR
Sbjct: 956 DSTVTTVDESQVVTRYAYVLFYRR 979


>gi|52078392|gb|AAH82241.1| USP19 protein, partial [Homo sapiens]
          Length = 1179

 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 393 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 452

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 453 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 512

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 513 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 572

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 573 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVHVK-PENLRLAE 630

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +   +L K + V L++  R Q
Sbjct: 631 VIKNRFHRVFL--PSHSLDTVSPSDTLLCFELLSSELAKERVVVLEVQQRPQ 680



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 93/263 (35%), Positives = 135/263 (51%), Gaps = 25/263 (9%)

Query: 581  PSGEAHSNSSSNI-AKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 858  PAGERVSRPEAAVPGYQHPSEAMNAHTPQFFIYKIDSSNREQRLEDKGD---------TP 908

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
            + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 909  LELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 968

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM-KHKLETFVNFPIH 751
            E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+   + + K+   V FP+ 
Sbjct: 969  EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSFRSFIWRDKINDLVEFPVR 1028

Query: 752  DFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFDD 804
            + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FDD
Sbjct: 1029 NLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFDD 1088

Query: 805  SHISPINEDDVKSAAAYVLFYRR 827
            S ++ ++E  V +  AYVLFYRR
Sbjct: 1089 STVTTVDESQVVTRYAYVLFYRR 1111


>gi|332817143|ref|XP_001160324.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19 isoform 2 [Pan
           troglodytes]
          Length = 1318

 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 495 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 554

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 555 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 614

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 615 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 674

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 675 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVHVK-PENLRLAE 732

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +   +L K + V L++  R Q
Sbjct: 733 VIKNRFHRVFL--PSHSLDTVSPSDMLLCFELLSSELAKERVVVLEVQQRPQ 782



 Score =  152 bits (384), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 136/264 (51%), Gaps = 27/264 (10%)

Query: 581  PSGEAHSNSSSNI-AKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 960  PAGERVSRPEAAVPGYQHPSEAMNAHTPLFFIYKIDSSNREQRLEDKGD---------TP 1010

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
            + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 1011 LELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 1070

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPI 750
            E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+
Sbjct: 1071 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPV 1129

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFD 803
             + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FD
Sbjct: 1130 RNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFD 1189

Query: 804  DSHISPINEDDVKSAAAYVLFYRR 827
            DS ++ ++E  V +  AYVLFYRR
Sbjct: 1190 DSTVTTVDESQVVTRYAYVLFYRR 1213


>gi|194378288|dbj|BAG57894.1| unnamed protein product [Homo sapiens]
          Length = 1419

 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 596 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 655

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 656 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 715

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 716 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 775

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 776 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVHVK-PENLRLAE 833

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +   +L K + V L++  R Q
Sbjct: 834 VIKNRFHRVFL--PSHSLDTVSPSDTLLCFELLSSELAKERVVVLEVQQRPQ 883



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 136/264 (51%), Gaps = 27/264 (10%)

Query: 581  PSGEAHSNSSSNIAK-EDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 1061 PAGERVSRPEAAVPGYQHPSEAMNAHTPQFFIYKIDSSNREQRLEDKGD---------TP 1111

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
            + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 1112 LELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 1171

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPI 750
            E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+
Sbjct: 1172 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPV 1230

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFD 803
             + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FD
Sbjct: 1231 RNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFD 1290

Query: 804  DSHISPINEDDVKSAAAYVLFYRR 827
            DS ++ ++E  V +  AYVLFYRR
Sbjct: 1291 DSTVTTVDESQVVTRYAYVLFYRR 1314


>gi|119585359|gb|EAW64955.1| ubiquitin specific peptidase 19, isoform CRA_a [Homo sapiens]
 gi|119585360|gb|EAW64956.1| ubiquitin specific peptidase 19, isoform CRA_a [Homo sapiens]
          Length = 1318

 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 495 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 554

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 555 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 614

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 615 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 674

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 675 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVHVK-PENLRLAE 732

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +   +L K + V L++  R Q
Sbjct: 733 VIKNRFHRVFL--PSHSLDTVSPSDTLLCFELLSSELAKERVVVLEVQQRPQ 782



 Score =  154 bits (388), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 136/264 (51%), Gaps = 27/264 (10%)

Query: 581  PSGEAHSNSSSNI-AKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 960  PAGERVSRPEAAVPGYQHPSEAMNAHTPQFFIYKIDSSNREQRLEDKGD---------TP 1010

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
            + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 1011 LELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 1070

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPI 750
            E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+
Sbjct: 1071 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPV 1129

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFD 803
             + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FD
Sbjct: 1130 RNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFD 1189

Query: 804  DSHISPINEDDVKSAAAYVLFYRR 827
            DS ++ ++E  V +  AYVLFYRR
Sbjct: 1190 DSTVTTVDESQVVTRYAYVLFYRR 1213


>gi|397495158|ref|XP_003818427.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19 isoform 2 [Pan
           paniscus]
          Length = 1318

 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 495 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 554

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 555 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 614

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 615 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 674

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 675 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVHVK-PENLRLAE 732

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +   +L K + V L++  R Q
Sbjct: 733 VIKNRFHRVFL--PSHSLDTVSPSDMLLCFELLSSELAKERVVVLEVQQRPQ 782



 Score =  152 bits (384), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 136/264 (51%), Gaps = 27/264 (10%)

Query: 581  PSGEAHSNSSSNI-AKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 960  PAGERVSRPEAAVPGYQHPSEAMNAHTPLFFIYKIDSSNREQRLEDKGD---------TP 1010

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
            + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 1011 LELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 1070

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPI 750
            E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+
Sbjct: 1071 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPV 1129

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFD 803
             + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FD
Sbjct: 1130 RNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFD 1189

Query: 804  DSHISPINEDDVKSAAAYVLFYRR 827
            DS ++ ++E  V +  AYVLFYRR
Sbjct: 1190 DSTVTTVDESQVVTRYAYVLFYRR 1213


>gi|57529246|ref|NP_006668.1| ubiquitin carboxyl-terminal hydrolase 19 isoform 4 [Homo sapiens]
 gi|152031724|sp|O94966.2|UBP19_HUMAN RecName: Full=Ubiquitin carboxyl-terminal hydrolase 19; AltName:
           Full=Deubiquitinating enzyme 19; AltName: Full=Ubiquitin
           thioesterase 19; AltName:
           Full=Ubiquitin-specific-processing protease 19; AltName:
           Full=Zinc finger MYND domain-containing protein 9
 gi|148921559|gb|AAI46753.1| Ubiquitin specific peptidase 19 [Homo sapiens]
 gi|168269530|dbj|BAG09892.1| ubiquitin carboxyl-terminal hydrolase 19 [synthetic construct]
          Length = 1318

 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 495 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 554

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 555 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 614

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 615 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 674

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 675 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVHVK-PENLRLAE 732

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +   +L K + V L++  R Q
Sbjct: 733 VIKNRFHRVFL--PSHSLDTVSPSDTLLCFELLSSELAKERVVVLEVQQRPQ 782



 Score =  154 bits (388), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 136/264 (51%), Gaps = 27/264 (10%)

Query: 581  PSGEAHSNSSSNI-AKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 960  PAGERVSRPEAAVPGYQHPSEAMNAHTPQFFIYKIDSSNREQRLEDKGD---------TP 1010

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
            + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 1011 LELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 1070

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPI 750
            E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+
Sbjct: 1071 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPV 1129

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFD 803
             + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FD
Sbjct: 1130 RNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFD 1189

Query: 804  DSHISPINEDDVKSAAAYVLFYRR 827
            DS ++ ++E  V +  AYVLFYRR
Sbjct: 1190 DSTVTTVDESQVVTRYAYVLFYRR 1213


>gi|74179058|dbj|BAE42739.1| unnamed protein product [Mus musculus]
          Length = 1322

 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/292 (38%), Positives = 153/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 536 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 595

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 596 RALWKGTHQAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 655

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE V +E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 656 TVDSDGRPDEVVTEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 715

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + +  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 716 PL-PQKQKVLPIFYFAREPHSKPIKFLVSVSKENSSASEVLDSLSQSVHVK-PENLRLAE 773

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL  +   D L  + +  P+L K + V L++  R Q
Sbjct: 774 VIKNRFHRVFL--PSHSLDAVSPTDVLLCFELLSPELAKERVVVLEVQQRPQ 823



 Score =  153 bits (387), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 105/332 (31%), Positives = 162/332 (48%), Gaps = 40/332 (12%)

Query: 505  LQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESL 564
            LQL+  + E + GA +          P  S +S  ++++SG I+        P L  E +
Sbjct: 954  LQLVTPVAEGDTGAHRVWPPADRGPVPSTSGLS-SEMLASGPIEGC------PLLAGERV 1006

Query: 565  MHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLS 624
               ++  P          G  HS+ S N              P   +  +D SN    L 
Sbjct: 1007 SRPEAAVP----------GYQHSSESVN-----------THTPQFFIYKIDASNREQRLE 1045

Query: 625  VEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYT 684
             +G+  + +    +  +V+ +   + L+++     + L      G   + AR    +L  
Sbjct: 1046 DKGETPLELGDECSLALVWRN--NERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQ 1103

Query: 685  CLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKL 742
            CL  F R E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+
Sbjct: 1104 CLNLFTRPEVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKI 1162

Query: 743  ETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR---- 798
               V FP+ + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++      
Sbjct: 1163 NDLVEFPVRNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRS 1222

Query: 799  ---WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
               W  FDDS ++ ++E  V +  AYVLFYRR
Sbjct: 1223 DVGWRLFDDSTVTTVDESQVVTRYAYVLFYRR 1254


>gi|332215900|ref|XP_003257080.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19 isoform 4
           [Nomascus leucogenys]
          Length = 1318

 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 495 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 554

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 555 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 614

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 615 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 674

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 675 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVHVK-PENLRLAE 732

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +   +L K + V L++  R Q
Sbjct: 733 VIKNRFHRVFL--PSHSLDTVSPSDMLLCFELLSSELAKERVVVLEVQQRPQ 782



 Score =  152 bits (383), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 75/168 (44%), Positives = 103/168 (61%), Gaps = 10/168 (5%)

Query: 669  GPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIH 728
            G   + AR    +L  CL  F R E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ 
Sbjct: 1047 GSAGEAARAGHFTLDQCLNLFTRPEVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQ 1106

Query: 729  LKRFSYSRSM--KHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGH 786
            LKRFS+ RS   + K+   V FP+ + +L+K+   +   +   Y+LYA+ NHYGGM  GH
Sbjct: 1107 LKRFSF-RSFIWRDKINDLVEFPVRNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGH 1165

Query: 787  YTAHIKLLDENR-------WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            YTA  +L ++         W  FDDS ++ ++E  V +  AYVLFYRR
Sbjct: 1166 YTACARLPNDRSSQRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRR 1213


>gi|426340518|ref|XP_004034176.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19 isoform 3
           [Gorilla gorilla gorilla]
          Length = 1419

 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 596 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 655

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 656 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 715

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 716 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 775

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 776 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVHVK-PENLRLAE 833

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +   +L K + V L++  R Q
Sbjct: 834 VIKNRFHRVFL--PSHSLDTVSPSDVLLCFELLSSELAKERVVVLEVQQRPQ 883



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 136/264 (51%), Gaps = 27/264 (10%)

Query: 581  PSGEAHSNSSSNIAK-EDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 1061 PAGERVSRPEAAVPGYQHPSEAMNAHTPQFFIYKIDSSNREQRLEDKGD---------TP 1111

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
            + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 1112 LELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 1171

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPI 750
            E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+
Sbjct: 1172 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPV 1230

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFD 803
             + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FD
Sbjct: 1231 RNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFD 1290

Query: 804  DSHISPINEDDVKSAAAYVLFYRR 827
            DS ++ ++E  V +  AYVLFYRR
Sbjct: 1291 DSTVTTVDESQVVTRYAYVLFYRR 1314


>gi|4240271|dbj|BAA74914.1| KIAA0891 protein [Homo sapiens]
          Length = 1371

 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 548 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 607

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 608 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 667

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 668 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 727

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 728 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVHVK-PENLRLAE 785

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +   +L K + V L++  R Q
Sbjct: 786 VIKNRFHRVFL--PSHSLDTVSPSDTLLCFELLSSELAKERVVVLEVQQRPQ 835



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 136/264 (51%), Gaps = 27/264 (10%)

Query: 581  PSGEAHSNSSSNI-AKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 1013 PAGERVSRPEAAVPGYQHPSEAMNAHTPQFFIYKIDSSNREQRLEDKGD---------TP 1063

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
            + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 1064 LELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 1123

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPI 750
            E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+
Sbjct: 1124 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPV 1182

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFD 803
             + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FD
Sbjct: 1183 RNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFD 1242

Query: 804  DSHISPINEDDVKSAAAYVLFYRR 827
            DS ++ ++E  V +  AYVLFYRR
Sbjct: 1243 DSTVTTVDESQVVTRYAYVLFYRR 1266


>gi|395733810|ref|XP_002813806.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19 [Pongo abelii]
          Length = 1411

 Score =  180 bits (457), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 113/292 (38%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 588 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 647

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 648 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 707

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 708 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 767

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V++ K +    +++  L     +K  E L++AE
Sbjct: 768 PL-PQKQKVLPVFYFAREPHSKPIKFLVSISKENSTASEVLDSLSQNVHVK-PENLRLAE 825

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +   +L K + V L++  R Q
Sbjct: 826 VIKNRFHRVFL--PSHSLDTVSPSDMLLCFELLSSELAKERVVVLEVQQRPQ 875



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 136/264 (51%), Gaps = 27/264 (10%)

Query: 581  PSGEAHSNSSSNIAK-EDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 1053 PAGERVSRPEAAVPGYQHPSEAMNAHTPQFFIYKIDSSNREQRLEDKGD---------TP 1103

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
            + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 1104 LELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 1163

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPI 750
            E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+
Sbjct: 1164 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPV 1222

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFD 803
             + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FD
Sbjct: 1223 RNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFD 1282

Query: 804  DSHISPINEDDVKSAAAYVLFYRR 827
            DS ++ ++E  V +  AYVLFYRR
Sbjct: 1283 DSTVTTVDESQVVTRYAYVLFYRR 1306


>gi|405967141|gb|EKC32341.1| Ubiquitin carboxyl-terminal hydrolase 32 [Crassostrea gigas]
          Length = 1526

 Score =  180 bits (457), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 157/521 (30%), Positives = 219/521 (42%), Gaps = 154/521 (29%)

Query: 37  RPSGIDNSDLVN-------DATAEDPGAGPEIVDTLL-EGRDYILLPQEVWNQLHSWYGG 88
           +P  IDNS+L+          TAE    G    DT+L  G+D+ L+P+ +W  L +WYGG
Sbjct: 536 KPGPIDNSNLITPNNSKVVSLTAE---GGRLRRDTMLVRGKDFELVPEVIWRALSTWYGG 592

Query: 89  GPTLARKVISSGLSQTELAVEVYPLRLQLL------------------------------ 118
              L R VISS  +     +E+YP+ ++LL                              
Sbjct: 593 NIALPRTVISSKNNNGNPELELYPITVKLLRHQIVAQRPAPTSFTGVMSGIGGMALSMTN 652

Query: 119 ------VMPRGECS-TIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKH--ALMN 169
                  +PR   + T   SK+ TI +++   C+      E I +W   G++     L+ 
Sbjct: 653 YVSSAPPIPRRYVAFTATFSKQHTIQQIYEFLCTKVRFIREDIRLWKI-GNKDDIMTLLE 711

Query: 170 DMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAG 229
           D   T++D  I+ +Q                              S+L+E     L    
Sbjct: 712 DESMTVEDCVIEENQ------------------------------SILIEVRNKDL---- 737

Query: 230 GWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNS 289
                            T P   S    + T     V T+    G TGL NLGNTCFMN+
Sbjct: 738 -----------------TWPEEISQLAKNKTCRKEQVPTQK---GATGLNNLGNTCFMNA 777

Query: 290 AIQCLVHTPEFARYFRED-YRREINWQNPLGMV--------------------------- 321
           A+QC+ +T    +YF    +  E+N  NPLGM                            
Sbjct: 778 AVQCVSNTWPLTQYFIGGLHLFELNRSNPLGMKGHIAQRYGELVKDLWSGTSKTIAPLKL 837

Query: 322 --------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEY 361
                               ELL+FLLDGLHEDLNRV  KPY++ KD+DGR DE VA+E 
Sbjct: 838 RWTIGKYAPRFNGFQQHDSQELLSFLLDGLHEDLNRVHVKPYVELKDSDGREDEIVAEEA 897

Query: 362 WANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFT 421
           W NH+ RN SIIVD+  GQ KS + C  C  +SV FDPF YLSLPL   +   + V V  
Sbjct: 898 WENHLRRNQSIIVDLFHGQLKSQVRCKECGLLSVRFDPFNYLSLPLPMDSCIHLEVIVTR 957

Query: 422 SDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKV 462
            DGS +P  Y + +    + + L + L  + S+   + L V
Sbjct: 958 LDGS-VPIKYGIRLNMDEKYKALKKELSRLTSIPPDQVLFV 997



 Score = 50.4 bits (119), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 3/82 (3%)

Query: 746  VNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDS 805
            +N P     LT+ + N  S  +  Y+L +++ H G +G GHY  + K  ++ +WY ++DS
Sbjct: 1411 LNSPCMKCQLTRNIPNDESPIK--YDLSSMSCHTGILGGGHYVCYAKNPNQ-KWYCYNDS 1467

Query: 806  HISPINEDDVKSAAAYVLFYRR 827
                 + + +   +AY+LFY R
Sbjct: 1468 SCKECSVEQMDCNSAYILFYER 1489



 Score = 48.9 bits (115), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 13/126 (10%)

Query: 644  VDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYC 703
            +DW    L       LE L E   +   +++ +TEP++L TCL+AF          +W  
Sbjct: 1248 IDWEPTALHLRYQTALERLYEDHDSVEDSRRKQTEPINLDTCLQAFT---------IWRL 1298

Query: 704  --PQCKERR--QASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYV 759
              P  +E R  +AS         +  +++LKRF +      K    VNFP+ DF+ + Y+
Sbjct: 1299 TLPGLQETRYMEASFHTGKCDCSKCKIVNLKRFQFLNGRWVKSHKIVNFPVEDFDPSNYL 1358

Query: 760  ANKNSS 765
            A + SS
Sbjct: 1359 APRVSS 1364


>gi|326679111|ref|XP_689922.5| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19 [Danio rerio]
          Length = 1526

 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 110/291 (37%), Positives = 149/291 (51%), Gaps = 55/291 (18%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLGM------------ 320
           G TGL+NLGNTCFMNS IQ L +T E   YF +  +  EIN  NPLG             
Sbjct: 677 GFTGLVNLGNTCFMNSVIQSLSNTRELRDYFHDRGFESEINCNNPLGTGGRLAIGFAVLL 736

Query: 321 -----------------------------------VELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 737 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 796

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGR DE VA+E W  H  RNDS IVD+ QGQYKS LVCP+C+KVS+TFDPF+YL +
Sbjct: 797 TVDSDGRQDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPMCSKVSITFDPFLYLPV 856

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKH-GRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + +TV  F  +    P  + V+V K      ++++ +     +K  E L++ E
Sbjct: 857 PL-PQKQKVLTVFYFAKEPHKKPVKFLVSVSKESSSTAEVLESISRSVRIK-PENLRLTE 914

Query: 465 IQNHSIQRFLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +      R    P  SL T+   D L  + +    L+K + V L++  R Q
Sbjct: 915 VVKGRFHRIF-SPSQSLDTVSSSDLLFCFEMLSKDLIKERVVLLKVQQRPQ 964



 Score =  152 bits (383), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 85/217 (39%), Positives = 123/217 (56%), Gaps = 16/217 (7%)

Query: 623  LSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKN-GPVTKKARTEPLS 681
            L  +GD  + +P   T  +V   W     +K         LE  ++ G  T+ +R    +
Sbjct: 1190 LEEKGDAVLELPDECTLELV---WKNNERQKEYVLVRSKDLEFDEDPGSATETSRAGHFT 1246

Query: 682  LYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--K 739
            L  CL  F + E L PE+ WYCP+C++ R+ASK+L LWRLP VL+I LKRFS+ RS   +
Sbjct: 1247 LEQCLNLFTKPEVLAPEEAWYCPKCQQHREASKQLLLWRLPNVLIIQLKRFSF-RSFIWR 1305

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRRQ--LYELYALTNHYGGMGSGHYTAHIKL---- 793
             K+   V+FP+ + +L+K+        +Q  +Y+LYA+ NHYGGM  GHYTA+ +L    
Sbjct: 1306 DKINDMVDFPVRNLDLSKFCIGHKGDIQQPPIYDLYAVINHYGGMIGGHYTAYARLPSDK 1365

Query: 794  ---LDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
               L +  W  FDDS ++ + E  V +  AYVLFYRR
Sbjct: 1366 NSQLSDVGWRLFDDSTVTTVEESQVVTRYAYVLFYRR 1402


>gi|426340520|ref|XP_004034177.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19 isoform 4
           [Gorilla gorilla gorilla]
          Length = 1318

 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 154/292 (52%), Gaps = 57/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 495 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 554

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 555 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 614

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 615 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 674

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAE 464
           PL     + + V  F  +  + P  + V+V K +    +++  L     +K  E L++AE
Sbjct: 675 PL-PQKQKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVHVK-PENLRLAE 732

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           +  +   R FL  P  SL T+   D L  + +   +L K + V L++  R Q
Sbjct: 733 VIKNRFHRVFL--PSHSLDTVSPSDVLLCFELLSSELAKERVVVLEVQQRPQ 782



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 136/264 (51%), Gaps = 27/264 (10%)

Query: 581  PSGEAHSNSSSNI-AKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 960  PAGERVSRPEAAVPGYQHPSEAMNAHTPQFFIYKIDSSNREQRLEDKGD---------TP 1010

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
            + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 1011 LELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 1070

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPI 750
            E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+
Sbjct: 1071 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPV 1129

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFD 803
             + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FD
Sbjct: 1130 RNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFD 1189

Query: 804  DSHISPINEDDVKSAAAYVLFYRR 827
            DS ++ ++E  V +  AYVLFYRR
Sbjct: 1190 DSTVTTVDESQVVTRYAYVLFYRR 1213


>gi|392565514|gb|EIW58691.1| cysteine proteinase [Trametes versicolor FP-101664 SS1]
          Length = 1086

 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 150/522 (28%), Positives = 222/522 (42%), Gaps = 88/522 (16%)

Query: 60  EIVDTLLEGRDYILLPQEVWNQLHSWYGGGPT---LARKVISSGLSQTELAVEVYPLRLQ 116
           ++   L+E  D   +P+EVWN+L  WY  G     L RKVI+ GL Q E  +E+ P   +
Sbjct: 117 QVTSDLIEHVDCEFVPEEVWNKLLEWYVYGEPRYPLPRKVIARGLMQ-EPVLELRPPSFK 175

Query: 117 LLVM----------PRGECSTIRISKKETIGELHRRACSIFYLNLEQICIW--------- 157
           + ++          P  E +     K   +      A S       Q  +W         
Sbjct: 176 VHMLTPTSIPGQSSPVKEVTVSSTDKIRAVRHAFVAAVSPQKAASGQFRVWKTTSDASMD 235

Query: 158 ------DYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEK 211
                 D       +L+ D ++T+ D  +   +  +VE+++        S +     +  
Sbjct: 236 QLLFPVDTLRTCGASLLEDDEKTVGDELVDTSEVFVVELMNREKWILDASEVAPPPNSAP 295

Query: 212 KASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASA--RDSDNTLG--SSGVT 267
             S+    P  +      G      T     +   T     SA      NTL   S+   
Sbjct: 296 PPSASPPPPPPTQPGPLFGSGTDFFTQLQKKASPVTDATTTSAFQPSPSNTLTKPSTCPK 355

Query: 268 TRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM------ 320
            +   +G  GL N+GNTCFMNSAIQCL H  E   YF    Y+ E+N+ NPLGM      
Sbjct: 356 VQHDPLGTRGLGNMGNTCFMNSAIQCLAHNTELVDYFLTGAYQEELNYDNPLGMHGAVAQ 415

Query: 321 -------------------------------------------VELLAFLLDGLHEDLNR 337
                                                       EL+AFLLDGLHEDLNR
Sbjct: 416 AFGALMSRIWDPESTMSSYTPREFKQTLQRFAPQFSGYQQHDSQELVAFLLDGLHEDLNR 475

Query: 338 VKHKPYIKSKDADGRPDEEV---ADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVS 394
           V  KPY++  D +G  D+E+   A+  W  ++ +NDS++VD+ QGQY+STLVCP C+KVS
Sbjct: 476 VLKKPYVEKPDWEGGGDKELVELANTSWEGYMKQNDSVVVDLFQGQYQSTLVCPECSKVS 535

Query: 395 VTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSL 454
           +TFDPFMYL+LPL        TV     D         V + +H   +D+  +LG     
Sbjct: 536 ITFDPFMYLTLPLPVQKKWHHTVLYIPWDLEKPHVRVPVELNRHSSFKDVRTLLGRWMG- 594

Query: 455 KQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVP 496
              + L   E+ +H   + LDD ++    + D+D +  + +P
Sbjct: 595 ADPDNLLTLEVFSHQFYKNLDDTVVC-EDMADNDVIVCFELP 635



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 73/201 (36%), Positives = 114/201 (56%), Gaps = 22/201 (10%)

Query: 646  WSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQ 705
            W   L   ++  F+   L   +    T+K +   ++L  CL+ F +EE L  +D+WYCP 
Sbjct: 860  WEYALWNHWD-EFVHPKLAASRKAASTQKQKG--ITLQDCLDEFTKEEKLGADDLWYCPS 916

Query: 706  CKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANK--N 763
            CK+ +QA+K+ DLW+LP+VLV+HLKRFS SR ++ K++TF++FPI   +LT+ V  +   
Sbjct: 917  CKKHQQATKRFDLWKLPDVLVVHLKRFSDSRMLRDKIDTFIDFPIEGLDLTEMVGERLVG 976

Query: 764  SSRRQ-----------------LYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSH 806
            S  R+                  Y+L+ +  H GG G GHY A+       +WY+FDDS+
Sbjct: 977  SRLREQGADVEALGLEGLDEPLQYDLFGVDEHLGGSGGGHYRAYALNHVTGKWYHFDDSY 1036

Query: 807  ISPINEDDVKSAAAYVLFYRR 827
            ++    +   +  AY+LFYRR
Sbjct: 1037 VTESRPEAAVNENAYLLFYRR 1057


>gi|384494264|gb|EIE84755.1| hypothetical protein RO3G_09465 [Rhizopus delemar RA 99-880]
          Length = 1034

 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 124/376 (32%), Positives = 167/376 (44%), Gaps = 71/376 (18%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV----------- 321
           G+ GL NLGNTCFMNSA+QCL +TP+  ++F  D Y+ E+N  NPLGM            
Sbjct: 299 GVCGLQNLGNTCFMNSALQCLSNTPQLTKWFLADNYKNELNRDNPLGMKGQVAEAYGELI 358

Query: 322 ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                               ELLAFLLDGLHEDLNR+  KPYI+
Sbjct: 359 ERLWGGHSHSFAPRDFKYTIGKFNSSFYGYQQHDTQELLAFLLDGLHEDLNRIVKKPYIE 418

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
             D DG  DEE+A   W  H ARNDS+IVD+ QGQ+KS L+C  C  VSVTFDPFMYLSL
Sbjct: 419 LPDFDGMKDEEIAQRSWDYHRARNDSVIVDLFQGQFKSKLICSECKNVSVTFDPFMYLSL 478

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
           PL        TV     D +       VT+ K      L + +  + S+     L V E+
Sbjct: 479 PLPIKKKSKTTVVYVPYDPTQRIQRMIVTLNKDASIAHLQKEVARMMSVDDPSTLLVVEL 538

Query: 466 QNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLV--KKAVFLQLIHRLQEQ--------- 514
            ++ I +        ++TI   D +  Y++P  +  KK     L     E+         
Sbjct: 539 FSNKIYKIFPQ-YEPVATIGGSDIIYIYQLPGRLPSKKKTSTYLFASSDEEASKSEDENE 597

Query: 515 -----------EPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKES 563
                      E   A  ++Q + +G P V  I R    S   +   + + +  +   + 
Sbjct: 598 LIVFPVYCATVEKNDALVSAQPQQFGEPFVIGIPRKYATSPDLLYRLLSQHVERYTHFKL 657

Query: 564 LMHADSFDPSSMVTTV 579
               D  +P    TTV
Sbjct: 658 FEEVDGEEPVEYETTV 673



 Score =  133 bits (334), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 56/124 (45%), Positives = 86/124 (69%), Gaps = 5/124 (4%)

Query: 676  RTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYS 735
            + + ++L  CL+ F +EE L  ED+WYCP+CK+ + A KK DLWR+PE++V+HLKRFS+S
Sbjct: 908  KNKQVTLSDCLDEFTKEEELSEEDLWYCPKCKKHQMAIKKFDLWRMPEIVVVHLKRFSHS 967

Query: 736  RSMKHKLETFVNFPIHDFNLTKYVANK-----NSSRRQLYELYALTNHYGGMGSGHYTAH 790
            R+ + K++  ++FPI   +LT  V +      N   R +Y+LYA+  HYGG+G GH  A+
Sbjct: 968  RTWRDKIDVLIDFPIEGLDLTDRVLSVDKEILNEENRLIYDLYAVDKHYGGLGGGHCKAY 1027

Query: 791  IKLL 794
            I+L+
Sbjct: 1028 IELV 1031


>gi|301783509|ref|XP_002927172.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 31-like, partial
           [Ailuropoda melanoleuca]
          Length = 1228

 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 154/610 (25%), Positives = 248/610 (40%), Gaps = 115/610 (18%)

Query: 290 AIQCLVHTPEFARYFREDYRR---EINWQNPLGMVELLAFLLDGLHEDLNRVKHKPYIKS 346
           A+  L +TP+ +R F+    +   +    +     E L +LLD +HEDLN        +S
Sbjct: 74  ALWTLEYTPQHSRDFKSIVSKNALQYRGNSQHDAQEFLLWLLDRVHEDLNHA----VKQS 129

Query: 347 KDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLP 406
                +P  E              + + ++ Q QY+S+L CP C K S TFDPF+ +SLP
Sbjct: 130 GQPPLKPPSETDMMPEGPSFPVCSTFVQELFQAQYRSSLTCPHCQKQSNTFDPFLCISLP 189

Query: 407 LQATTTRTMTVTVFTSDGSALPSTYTVTVPKHG---RCRDLIQVLGNICSLKQSEELKVA 463
           +    TR + VTV      +      V VP  G   R R+ + +   I     ++++ + 
Sbjct: 190 IPLPHTRPLYVTVVYQGKCSHCMRIGVAVPLSGTVARLREAVSMETKI----PTDQIVLT 245

Query: 464 EIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQ----------------L 507
           E+      R   D    L T+ + D + A+  P++ +    L                 L
Sbjct: 246 EMYYDGFHRSFCD-TDDLETVHESDCIFAFETPEIFRPEGILSQRGIHLNSNLNHLKFAL 304

Query: 508 IHRLQEQEPGAAQ------------------------TTSQWKAYGTPLVSSISRDDVIS 543
            HRL   +  A Q                        T  Q K +G P V  +  +  I+
Sbjct: 305 DHRLSSMQAAAKQGKIDLPPTRAENDKIVLLVCNRACTGQQGKRFGLPFV--LHLEKTIA 362

Query: 544 SGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKA 603
              +Q  +   +  FL+    +    F                             S + 
Sbjct: 363 WDLLQKEILEKMKYFLRPTVCIQVCPF-----------------------------SLRV 393

Query: 604 VTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLL 663
           V++  +   L  E       +VE       P  +  + + V+W +   E  +  F+    
Sbjct: 394 VSVVGITYLLPQEEKPLCHPTVERALKSCGPGGTAHVKLVVEWDK---ETKDFLFVNTED 450

Query: 664 EVFKNGPVTKKAR-----TEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDL 718
           E   +    +  R      +  +L  C + + +EE L P+D W CP CK+ +Q S  L L
Sbjct: 451 EYIPDAESVRLQRERHHQPQTCTLSQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSL 510

Query: 719 WRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSS-----------RR 767
           W LP+VL+IHLKRF      + KL+  V FP+   ++T +V  ++ S           RR
Sbjct: 511 WTLPDVLIIHLKRFRQEGDRRVKLQNMVKFPLTGLDMTPHVVKRSQSSWSLPSHWSPWRR 570

Query: 768 Q----------LYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKS 817
                      +Y+LYA+ NH+G M  GHYTA+ K   +  WY FDDS +  ++ED+V +
Sbjct: 571 PYGLGRDPEDYVYDLYAVCNHHGTMQGGHYTAYCKNSVDGLWYCFDDSDVQQLSEDEVCT 630

Query: 818 AAAYVLFYRR 827
             AY+LFY+R
Sbjct: 631 QTAYILFYQR 640


>gi|431894059|gb|ELK03865.1| Ubiquitin carboxyl-terminal hydrolase 43 [Pteropus alecto]
          Length = 1417

 Score =  179 bits (453), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 163/655 (24%), Positives = 275/655 (41%), Gaps = 145/655 (22%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHT---PEF---ARYFREDYRREIN-------------- 313
           G  GL N GNTCFMN+ +QCL +T    EF    RY     R E+               
Sbjct: 97  GTQGLKNHGNTCFMNAVVQCLSNTDLLAEFLALGRYRAAPGRAEVTEQLAALVRALWTRE 156

Query: 314 --------WQNPLG-------------MVELLAFLLDGLHEDLNRVKHKPYI-KSKDADG 351
                   ++N +               +E L +LLD +HEDL      P   K +    
Sbjct: 157 YTPQLSAEFKNAVSKYGSQFRGNSQHDALEFLLWLLDRVHEDLEGSTRAPGSEKLQPETS 216

Query: 352 RPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATT 411
           +  E +     +  ++   S +    Q QY+S+L CP C K S TFDPF+ +SLP+    
Sbjct: 217 KTSENLLSP--SAQLSLGQSFVQSHFQAQYRSSLTCPHCLKQSNTFDPFLCVSLPIPLRQ 274

Query: 412 TRTMTVT-VFTSD-------GSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVA 463
           TR +++T VF S        G A+P   TV        R ++   G +      +E+ + 
Sbjct: 275 TRFLSITLVFPSKSQQFLRVGLAVPILSTVAA-----LRKMVAEEGRV----PVDEVILV 325

Query: 464 EIQNHSIQR-FLDDPLISLSTIKDDDHLAAYRVPKLVKKAV------FLQLIHRLQEQEP 516
           E+    +QR F D+    L+TI + D++ A+  P    + +       L +  RL  +E 
Sbjct: 326 ELYPSGLQRSFFDEE--DLNTITEGDNVYAFLAPPPTGQEISSACPPGLSVSPRLAARES 383

Query: 517 ---------------------GAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRML 555
                                G+ Q  S+   +G P +  +  D  IS  ++Q  +   +
Sbjct: 384 QRLSLPLHSENKVLILFCNLVGSGQQASR---FGPPFL--VREDRTISWVQLQQCILSKV 438

Query: 556 SPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVD 615
              +K E+ +     +P S+ +                        +++    LP Q   
Sbjct: 439 QYLMKNEAPIQ----NPGSLFSI-------------------RVVGQSLAYGYLPPQ--- 472

Query: 616 ESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEK-YNTHFLENLLEVFKNGPVTKK 674
            S      +++    +R P     + + ++W   + E  + +   E + +        + 
Sbjct: 473 HSQPLCHWAIDRALHLRRPGGPPHVKLAIEWDSCVKESLFGSLQEERVQDADSVWQQQQA 532

Query: 675 ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            +    +L  C + + +EE L  +D W CP CK  +Q   KL LW LP++L+IHLKRF  
Sbjct: 533 HQQHSCTLDECFQFYTKEEQLAQDDAWKCPHCKVLQQGMVKLSLWTLPDILIIHLKRFCQ 592

Query: 735 SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQ----------------------LYEL 772
               ++KL T V FP+   N+  +VA +++  +                        Y+L
Sbjct: 593 VGERRNKLSTLVKFPLCGLNMAPHVAQRSAGPKPEPGSWTSWKQPACLPTSYPLDFQYDL 652

Query: 773 YALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           YA+ NH+G +  GHYTA+ +   + +WY++DDS +  + ED+V +  AY+LFY++
Sbjct: 653 YAVCNHHGSLQGGHYTAYCRNSLDGQWYSYDDSTVESLLEDEVITRGAYILFYQK 707


>gi|351710270|gb|EHB13189.1| Ubiquitin carboxyl-terminal hydrolase 31, partial [Heterocephalus
           glaber]
          Length = 1188

 Score =  179 bits (453), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 157/599 (26%), Positives = 253/599 (42%), Gaps = 91/599 (15%)

Query: 290 AIQCLVHTPEFARYFREDYRR---EINWQNPLGMVELLAFLLDGLHEDLNRVKHKPYIKS 346
           A+  L +TP+ +R F+    +   +    +     E L +LLD +HEDLN        +S
Sbjct: 33  ALWTLEYTPQHSRDFKSIVSKNALQYRGNSQHDAQEFLLWLLDRVHEDLNHA----VKQS 88

Query: 347 KDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLP 406
                +P  E              + + ++ Q QY+S+L CP C K S TFDPF+ +SLP
Sbjct: 89  GQPPLKPPSETDMMPEGPSFPVCSTFVQELFQAQYRSSLTCPHCQKQSNTFDPFLCISLP 148

Query: 407 LQATTTRTMTVTVFTSDGSALPSTYTVTVPKHG---RCRDLIQVLGNICSLKQSEELKVA 463
           +    TR + VTV      +      V VP  G   R R+ + +   I     ++++ + 
Sbjct: 149 IPLPHTRPLYVTVVYQGKCSHCMRIGVAVPLSGTVARLREAVSMETKI----PTDQIVLT 204

Query: 464 EIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLI--------------- 508
           E+      R   D    L T+ + D + A+  P++ +    L                  
Sbjct: 205 EMYYDGFHRSFCD-TDDLETVHESDCIFAFETPEIFRPEGILSQRGIHLNNNLNHLKFGL 263

Query: 509 --HRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQ---RMLSPF----- 558
             HRL      A QTT++      P   + S   V+       T Q   R   PF     
Sbjct: 264 DHHRLS----SATQTTAKQGKMDQPTTRAGSDKIVLLVCNRACTGQQGKRFGLPFVLHLE 319

Query: 559 -------LKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPL 611
                  L+KE L     F   ++   V P                  S + V++  +  
Sbjct: 320 KTIAWDLLQKEILEKMKYFLRPTVCIQVCPF-----------------SLRVVSVVGITY 362

Query: 612 QLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPV 671
            L  E       +VE       P  +  + + V+W ++  +    +  +  +   ++  +
Sbjct: 363 LLPQEEQPLCHPTVERALKSCGPGGTAHVKLVVEWDKETKDFLFVNTEDEYIPDSESVRL 422

Query: 672 TKKARTEP--LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHL 729
            K+   +P   +L  C + + +EE L P+D W CP CK+ +Q S  L LW LP+VL+IHL
Sbjct: 423 QKERHHQPQTCTLSQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHL 482

Query: 730 KRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSS-----------RRQ---------- 768
           KRF      + KL+  V FP+   ++T +V  ++ S           RR           
Sbjct: 483 KRFRQEGDKRMKLQNMVKFPLTGLDMTPHVVKRSQSSWSLPSHWSPWRRPYGLGRDPEDY 542

Query: 769 LYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           +Y+LYA+ NH+G M  GHYTA+ K   +  WY FDDS +  ++ED+V +  AY+LFY+R
Sbjct: 543 IYDLYAVCNHHGTMQGGHYTAYCKNSVDGFWYCFDDSDVQQLSEDEVCTQTAYILFYQR 601


>gi|440797358|gb|ELR18446.1| ubiquitin carboxylterminal hydrolase 9, putative [Acanthamoeba
           castellanii str. Neff]
          Length = 539

 Score =  178 bits (452), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 160/562 (28%), Positives = 253/562 (45%), Gaps = 107/562 (19%)

Query: 322 ELLAFLLDGLHEDLNRVKHKP-YIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQ 380
           E +A+LLDGLHED+NR K  P   ++ D D       A   WA H AR+DS +VD+  GQ
Sbjct: 28  EFMAYLLDGLHEDVNRAKKHPAQSEATDVDL---GAAARREWAVHKARHDSRVVDLFHGQ 84

Query: 381 YKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPST---YTVTVPK 437
             S L C  C + S  F+PF++LSLP+ +   R+  V V  +    +  T   Y V V K
Sbjct: 85  LDSALRCRQCQRESHRFEPFVFLSLPVPSKYQRSFEVVVVPTLSRGVAGTATLYGVKVVK 144

Query: 438 HGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRV-- 495
            G   DL++ L  +C L  +  L+VAE++ H I   L      L  + + D L A+ V  
Sbjct: 145 AGTVADLVRELSAVCGLPPAT-LQVAEVRAHRIWNVLPA-AKPLQELAESDVLYAFEVAP 202

Query: 496 ------PKLVKKAVF---------------------------------LQLIHRLQEQEP 516
                 P  V                                      +Q++HR+     
Sbjct: 203 QPTALAPSPVGALGGPPPAPPAAGPPPPPPSGAAGPRPPHQKPQLPADVQVLHRVVTTTT 262

Query: 517 GAAQTTSQWKAY------GTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSF 570
              +   Q +        G P V S +    +++ ++ + + R++ PF    +   A + 
Sbjct: 263 TDGEAAPQPQRAPVPSLTGCPFVYSFAGAKEVTNAQLGAGLARLVDPFTAAAAPAPAPTG 322

Query: 571 DPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPN--LPLQLVDESNVCFDLSVEGD 628
            P  ++  V+  G A  N  +      A       +P+   PL+L    N    ++V+ D
Sbjct: 323 RPY-VLRVVNKQGTACGNCPA------AKKCAGCRVPDDGEPLEL----NARCAIAVDWD 371

Query: 629 KTIRIPSSSTSI-VVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLE 687
               IP+    +  V    +Q   E       E  LEV +          E ++L  CL+
Sbjct: 372 ----IPAGPEELHPVLAALNQAPSEH------EASLEVSRE--------EEKIALGDCLQ 413

Query: 688 AFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF-SYSRSMKHKLETFV 746
           ++ REE L  ++MW+CPQC  ++ A+ +  +WR PE LV+HLKRF    RS + KL+ FV
Sbjct: 414 SYTREELLGEDNMWHCPQCDAKQPAATQTQVWRFPEYLVVHLKRFPPVMRSWRDKLDMFV 473

Query: 747 NFPIHDFNLTKY-VANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDS 805
           +FP+ +++L++Y  +++ ++    Y+LYA+ NH    G  HYTAH +    +RW      
Sbjct: 474 DFPL-EWDLSEYERSHEQAASGPHYQLYAVVNHSEETGVAHYTAHTRDAG-DRW------ 525

Query: 806 HISPINEDDVKSAAAYVLFYRR 827
                    V+S  AY+L YRR
Sbjct: 526 ---------VRSPHAYLLSYRR 538


>gi|145519321|ref|XP_001445527.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124412982|emb|CAK78130.1| unnamed protein product [Paramecium tetraurelia]
          Length = 973

 Score =  178 bits (452), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 141/475 (29%), Positives = 217/475 (45%), Gaps = 96/475 (20%)

Query: 63  DTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEV--------YPLR 114
           + L E  DYI++ +++W    ++Y G P + R    +G+ +T +AV +        YP  
Sbjct: 103 ENLQENIDYIIVDKDIWQFFTTYYHGTP-IVRMSNGTGIEKT-VAVNLLKFKSTLLYPSV 160

Query: 115 LQLLVMPRGECSTI--------RISKKETIGELHRRACSIFYLNL---EQICIWDYYGHR 163
           ++ + M R +  T         R  K +    L ++    F  N    + + IW Y+  +
Sbjct: 161 IRQIAMDRVQKQTFEKLNLQVDRSMKLKDYYNLLQKTVPTFTGNFAKDDNVRIWRYHSDQ 220

Query: 164 K---HALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEP 220
           K    AL  D+ + +  A+++M+ ++  +   +    +   +I+D G  +     +  + 
Sbjct: 221 KDIQKALFADIQKQV--ASLEMNDEMSFDFNGDYIHYSIYETIEDVGILDNHLIIIEFKD 278

Query: 221 SKSSLSIAGGWSASKGTSRN-HSSEISTSPNL-ASARDSDN------TLGSSGVTTRGAS 272
                 I       +G   N    +I   P   A A+D +N        GS   T +G +
Sbjct: 279 EIKPWCIRNKAVQVEGKCENCQILKILNHPWCNAKAKDYNNHSMRCEKFGSDDDTIKGLT 338

Query: 273 ------VGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM----- 320
                  GL GL NLGNTCFMNS  QC+ +T     YF  + Y  EIN  NP+G      
Sbjct: 339 QQPNSIAGLAGLSNLGNTCFMNSGTQCISNTVPLTEYFLSNQYFDEINMDNPIGTKGQLV 398

Query: 321 ------------------------------------------VELLAFLLDGLHEDLNRV 338
                                                      EL+ F+LDG+HEDLNRV
Sbjct: 399 KRVGSLLKKLWYGEKSVVTPTNYKKAVGQFQPMFKGYHQHDSSELITFVLDGIHEDLNRV 458

Query: 339 KHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFD 398
           K KPY+++KD+DGR D  VA E W NH+ARN SIIVD+  GQYKSTL CP C ++S+TFD
Sbjct: 459 KKKPYVETKDSDGRTDFVVAKESWINHLARNQSIIVDLMYGQYKSTLKCPKCARLSITFD 518

Query: 399 PFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVP----KHGRCRDLIQVLG 449
           P++ + L + +   RT++   F    S   ST+ V +P    K+   ++  QVLG
Sbjct: 519 PYLMVQLGIPSQKKRTISFKYF---DSFFNSTFKV-IPFDKNKNLTLKEYYQVLG 569



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 68/164 (41%), Positives = 100/164 (60%), Gaps = 17/164 (10%)

Query: 680 LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYS-RSM 738
           +SL  CL    + E L  E+ W+C  C+E  QA K + +++ P++L+  LKRF  S R  
Sbjct: 793 VSLADCLSFSQQPEQLNSENTWFCKVCQEHVQAYKSMQIYKAPQILIFTLKRFKASNRMF 852

Query: 739 KHKLETFVNFPIHDFNLTKYVAN----------------KNSSRRQLYELYALTNHYGGM 782
           K KLETFV+FPI+  ++T Y+ N                +N+ +R +Y+LYA++NH+GG+
Sbjct: 853 KQKLETFVDFPINGLDMTDYLINSKTPQEYENETEDDNGENNKQRVIYDLYAVSNHFGGL 912

Query: 783 GSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYR 826
           G GHYTA  K     +WYNFDDSH+  I+E  V + +AYVL Y+
Sbjct: 913 GGGHYTACAKNKYTKKWYNFDDSHVGEISEQQVITKSAYVLCYQ 956


>gi|388855753|emb|CCF50741.1| related to UBP12-ubiquitin C-terminal hydrolase [Ustilago hordei]
          Length = 1422

 Score =  177 bits (450), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/286 (38%), Positives = 148/286 (51%), Gaps = 57/286 (19%)

Query: 268 TRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM------ 320
           T G S GL GL NLGNTCFMNSA+QCL +T E  +YF    Y++E+N  NPLGM      
Sbjct: 529 TIGPSRGLRGLNNLGNTCFMNSALQCLSNTYELQQYFVSGAYKQELNTDNPLGMGGAIAD 588

Query: 321 -----------------------------------------VELLAFLLDGLHEDLNRVK 339
                                                     ELLAFLLDGLHEDLNR+ 
Sbjct: 589 AFGNLITNIWNGQGGSFWPREFKFALSRFAPQFSGYAQHDSQELLAFLLDGLHEDLNRIL 648

Query: 340 HKPYIKSKDADGRPDEEV---ADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVT 396
            KPYI++ D +G  ++++   A   W  + ARNDS+IVD+ QGQY+STLVCP CNK+S+ 
Sbjct: 649 KKPYIEAPDWEGGDEKDLVAFAKRQWDIYKARNDSVIVDLFQGQYRSTLVCPECNKISIK 708

Query: 397 FDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQ 456
           FDPFMYL+LP+         V     D S    ++ V +P       L Q +     + +
Sbjct: 709 FDPFMYLTLPIPNKKMWRGQVYFVPQDPSKPMQSFQVQLPAGTTVGKLRQKVAAQFGV-E 767

Query: 457 SEELKVAEIQNHSIQRFLDD--PLISLSTIKDDDHLAAYRVPKLVK 500
           ++ L   E+ +H I +++DD  PLI    IKD D +  + VP   K
Sbjct: 768 TKRLICGEVWHHRIYKWIDDYEPLID---IKDGDFVYFWEVPAAPK 810



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 83/218 (38%), Positives = 116/218 (53%), Gaps = 41/218 (18%)

Query: 647  SQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQC 706
            S +L  +Y     + + E    GPV    R + LS+  C++ F +EE L  +D WYCP C
Sbjct: 1096 SGQLWGEYKEVIDKAIREKDNAGPV----RPKTLSIEDCMDEFTKEEQLGEDDPWYCPSC 1151

Query: 707  KERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSR 766
            KE RQA+KK DLW+ P++LV+HLKRFS  R  + KL   V+FP+   +LT  V    + R
Sbjct: 1152 KEFRQATKKFDLWKAPDILVVHLKRFSAGRHSRDKLNMLVDFPLEGLDLTDRVEGTQALR 1211

Query: 767  R------------------------------------QLYELYALTNHYGGMGSGHYTAH 790
            R                                     +Y+LYA+ NH+GG+G GHYTA 
Sbjct: 1212 RVQAEAKESGEELSESMLGSGILRPLEDNDDAVAVDAPIYDLYAVDNHFGGLGGGHYTAF 1271

Query: 791  IKLLDENRWYNFDDSHISPI-NEDDVKSAAAYVLFYRR 827
             K   + +WY FDD  + P+ N + VKS++AY+LFYRR
Sbjct: 1272 AKSPADGKWYEFDDLSVRPVANAETVKSSSAYLLFYRR 1309



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 7/85 (8%)

Query: 38  PSGIDNSDLVN-DATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGG-GPTLARK 95
           P  IDNSDL++ D+T       P+I + +    DY +LP+E WN L  WYG  GP  AR+
Sbjct: 279 PGPIDNSDLLDEDSTPAFAQLRPQINEHI----DYEMLPEEGWNLLVGWYGSKGPVFARQ 334

Query: 96  VISSGLSQTELAVEVYPLRLQLLVM 120
           VI  G S  + +VE YP  L+LL +
Sbjct: 335 VI-HGFSPGQESVEFYPPTLRLLKL 358


>gi|389616163|ref|NP_001254505.1| ubiquitin carboxyl-terminal hydrolase 43 isoform 2 [Homo sapiens]
 gi|219521674|gb|AAI71759.1| USP43 protein [Homo sapiens]
 gi|223460464|gb|AAI36369.1| USP43 protein [Homo sapiens]
          Length = 1118

 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 163/654 (24%), Positives = 267/654 (40%), Gaps = 148/654 (22%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLV-------------------------------------- 295
           G  GL N GNTCFMN+ +QCL                                       
Sbjct: 99  GAQGLKNHGNTCFMNAVVQCLSNTDLLAEFLALGRYRAAPGRAEVTEQLAALVRALWTRE 158

Query: 296 HTPEFARYFR---EDYRREINWQNPLGMVELLAFLLDGLHEDLNRVKHKPYIKSKDADGR 352
           +TP+ +  F+     Y  +    +    +E L +LLD +HEDL      P  +    +  
Sbjct: 159 YTPQLSAEFKNAVSKYGSQFQGNSQHDALEFLLWLLDRVHEDLEGSSRGPVSEKLPPEAT 218

Query: 353 PDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTT 412
              E      A  +    S +    Q QY+S+L CP C K S TFDPF+ +SLP+    T
Sbjct: 219 KTSENCLSPSA-QLPLGQSFVQSHFQAQYRSSLTCPHCLKQSNTFDPFLCVSLPIPLRQT 277

Query: 413 RTMTVT-VFTSD-------GSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAE 464
           R ++VT VF S        G A+P   TV        R ++   G +     ++E+ + E
Sbjct: 278 RFLSVTLVFPSKSQRFLRVGLAVPILSTVAA-----LRKMVAEEGGV----PADEVILVE 328

Query: 465 IQNHSIQR-FLDDPLISLSTIKDDDHLAAYRVPK------LVKKAVFLQLIHRLQEQEP- 516
           +     QR F D+    L+TI + D++ A++VP       L    + L    RL  +E  
Sbjct: 329 LYPSGFQRSFFDE--EDLNTIAEGDNVYAFQVPPSPSQGTLSAHPLGLSASPRLAAREGQ 386

Query: 517 --------------------GAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLS 556
                               G+ Q  S+   +G P +  I  D  +S  ++Q ++   + 
Sbjct: 387 RFSLSLHSESKVLILFCNLVGSGQQASR---FGPPFL--IREDRAVSWAQLQQSILSKVR 441

Query: 557 PFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDE 616
             +K E+ +                      N  S  +      S A +     L   D 
Sbjct: 442 HLMKSEAPVQ---------------------NLGSLFSIRVVGLSVACSY----LSPKDS 476

Query: 617 SNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEK-YNTHFLENLLEVFKNGPVTKKA 675
             +C   +V+    +R P     + + V+W   + E+ + +   E   +        +  
Sbjct: 477 RPLCH-WAVDRVLHLRRPGGPPHVKLAVEWDSSVKERLFGSLQEERAQDADSVWQQQQAH 535

Query: 676 RTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYS 735
           +    +L  C + + +EE L  +D W CP C+  +Q   KL LW LP++L+IHLKRF   
Sbjct: 536 QQHSCTLDECFQFYTKEEQLAQDDAWKCPHCQVLQQGMVKLSLWTLPDILIIHLKRFCQV 595

Query: 736 RSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQ----------------------LYELY 773
              ++KL T V FP+   N+  +VA +++S                         LY+LY
Sbjct: 596 GERRNKLSTLVKFPLSGLNMAPHVAQRSTSPEAGLGPWPSWKQPDCLPTSYPLDFLYDLY 655

Query: 774 ALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           A+ NH+G +      A+ +   + +WY++DDS + P+ ED+V +  AY+LFY++
Sbjct: 656 AVCNHHGNL-----QAYCRNSLDGQWYSYDDSTVEPLREDEVNTRGAYILFYQK 704


>gi|301111055|ref|XP_002904607.1| ubiquitin-specific protease, putative [Phytophthora infestans
           T30-4]
 gi|262095924|gb|EEY53976.1| ubiquitin-specific protease, putative [Phytophthora infestans
           T30-4]
          Length = 901

 Score =  177 bits (448), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 112/314 (35%), Positives = 148/314 (47%), Gaps = 64/314 (20%)

Query: 231 WSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSA 290
           W   KG  R+          L +    D+ L       RG      GL NLGNTCFMNSA
Sbjct: 282 WKYHKGVCRS---------TLTAEEKEDDILQGLQAERRGK----MGLRNLGNTCFMNSA 328

Query: 291 IQCLVHTPEFARYFRED-YRREINWQNPLGM----------------------------- 320
           +QCL H     RYF  + Y++++N  NPLG                              
Sbjct: 329 LQCLSHVELLTRYFLSNRYKKDLNRDNPLGTGGNLAEEYDGLLKELWFGTVPSTSPANLK 388

Query: 321 ------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEE-VADEY 361
                              ELLA+++DGLHEDLNRVKHKPY +  ++DG  D+  VA E 
Sbjct: 389 RAISRFAPQFSGFQQHDAQELLAYIIDGLHEDLNRVKHKPYTEVNESDGSQDDAAVAKEA 448

Query: 362 WANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFT 421
           W  H+ RNDSI VD  QGQ+KST+VCP+CNKVS+TFDPF  + L L     R + V    
Sbjct: 449 WQRHLLRNDSIFVDHVQGQFKSTVVCPICNKVSITFDPFNCIQLELPQQQNRQIEVIFVP 508

Query: 422 SDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISL 481
           S+ +   + Y V VPK G    L + L  +C +  S  L  A+I      R + D    +
Sbjct: 509 SESAKSMTRYLVDVPKKGSVLVLKRALSKLCGVSPS-SLLAADIYQSMTYRIIGD-TERV 566

Query: 482 STIKDDDHLAAYRV 495
              ++DD +  Y+V
Sbjct: 567 HRFREDDRILMYQV 580



 Score =  145 bits (366), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 69/155 (44%), Positives = 101/155 (65%), Gaps = 7/155 (4%)

Query: 680 LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRS-M 738
           +SL  C   F++ E L   ++WYC +C E RQA K +++WRLP+VLV+ LKRF Y    +
Sbjct: 731 ISLDDCFRNFVKPETLDQANLWYCSKCNEHRQARKTMEMWRLPDVLVLSLKRFEYRNEIL 790

Query: 739 KHKLETFVNFPIHDFNLTKYVANKNSSRRQL-YELYALTNHYGGMGSGHYTAHIK-LLDE 796
           + KL+ +V+FP+   +++ Y   K+  +  L Y+L+A++NHYG MG GHYTA  K   DE
Sbjct: 791 RDKLDVYVDFPLEGLDMSPYCLEKSDDKDHLSYDLFAVSNHYGSMGFGHYTAFAKSWQDE 850

Query: 797 NR----WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
                 WY+FDDS ++P   + VKS AAY+LFY+R
Sbjct: 851 GEMYPGWYSFDDSLVAPAMPNQVKSNAAYILFYKR 885



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 55/117 (47%), Gaps = 16/117 (13%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDL--VNDATAEDPGAG 58
           WW+ W ++V  D   +             A  + +  PS I+N  L  V   T+ D   G
Sbjct: 91  WWERWCEFVGYDDKQDI-----------PATGAGNPAPSRINNLPLLHVGSDTSLDELMG 139

Query: 59  PEIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSG---LSQTELAVEVYP 112
             +   L E   Y+LLPQEVW+ L  WY GGPT+AR V+  G   L      V+VYP
Sbjct: 140 GPLRPQLKENYHYVLLPQEVWDALLIWYSGGPTIARFVVQVGDPELGNAFNRVQVYP 196


>gi|291393657|ref|XP_002713460.1| PREDICTED: ubiquitin thioesterase 19 isoform 1 [Oryctolagus
           cuniculus]
          Length = 1322

 Score =  176 bits (446), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 116/296 (39%), Positives = 154/296 (52%), Gaps = 65/296 (21%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 536 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 595

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 596 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 655

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 656 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 715

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQS-----EEL 460
           PL     + + V  F  +  + P  + V+V      ++       + SL QS     E L
Sbjct: 716 PL-PQKQKVLPVFYFAREPHSKPVKFLVSV-----SKESSSASEVLDSLSQSVHVKPENL 769

Query: 461 KVAEIQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           ++AE+  +   R FL  P  SL T+   D L  + +  P+L K + V L++  R Q
Sbjct: 770 RLAEVIKNRFHRVFL--PSHSLDTVSPSDVLLCFELLSPELAKERVVVLEVQQRPQ 823



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 136/264 (51%), Gaps = 27/264 (10%)

Query: 581  PSGEAHSNSSSNIAK-EDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 1001 PAGERVSRPEAAVPGYQHPSEAMNAHTPQFFIYKIDASNREQRLEDKGD---------TP 1051

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
            + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 1052 LELGDDCSLALVWRNNERLPEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 1111

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPI 750
            E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+
Sbjct: 1112 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPV 1170

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFD 803
             + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FD
Sbjct: 1171 RNLDLSKFCIGQKEEQLPNYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFD 1230

Query: 804  DSHISPINEDDVKSAAAYVLFYRR 827
            DS ++ ++E  V +  AYVLFYRR
Sbjct: 1231 DSTVTTVDESQVVTRYAYVLFYRR 1254


>gi|320165140|gb|EFW42039.1| NY-REN-60 antigen [Capsaspora owczarzaki ATCC 30864]
          Length = 2127

 Score =  176 bits (445), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 106/279 (37%), Positives = 141/279 (50%), Gaps = 62/279 (22%)

Query: 274  GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV----------- 321
            GLTGL NLGNTCF+NSA+QC+ +T    +YF    +  E N  NP+GM            
Sbjct: 1234 GLTGLHNLGNTCFLNSALQCVNNTQPLTQYFLNGLHTYEFNVNNPIGMKGEVAKQYAALV 1293

Query: 322  ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                                E LAFLLDGLHEDLNRV  KPY++
Sbjct: 1294 QQVWAGTSTSVSPAKLRSTIAKYEPRFSSFQQHDAQEFLAFLLDGLHEDLNRVLSKPYVE 1353

Query: 346  SKDA-DGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLS 404
             KD  DG PDE VA ++W NH  RN SIIVD+  GQ KS + C  CN +SV+FDPF +LS
Sbjct: 1354 LKDCEDGTPDEIVAAQWWDNHFKRNRSIIVDLFHGQLKSQVRCQTCNHISVSFDPFTFLS 1413

Query: 405  LPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAE 464
            LPL       M   +  +DGS  PS Y +T+    +   L   L  + ++++ E + +AE
Sbjct: 1414 LPLPVEHDIFMETVLLRADGSP-PSRYGITLDSGNQYSHLKASLAKLANIEEVESIALAE 1472

Query: 465  IQNHSIQRFLDD-----PLISLSTIKDDDHLAAYRVPKL 498
            + N ++ RFL+D     P+       +   L AY VP +
Sbjct: 1473 VSNSAVLRFLNDSDEIRPI-------NRGQLVAYHVPGI 1504



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 59/82 (71%)

Query: 673  KKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF 732
            K+++ E +SL  CL+AF +EE L   D+WYCP+CK+ R+ASKK+D+++LP +LVIHLKRF
Sbjct: 1842 KRSQDETISLDDCLKAFTKEEDLGANDLWYCPKCKDFRKASKKMDIFKLPPILVIHLKRF 1901

Query: 733  SYSRSMKHKLETFVNFPIHDFN 754
             +      K +  V FP H+F+
Sbjct: 1902 QFVSGRWSKSQKLVQFPEHNFD 1923



 Score = 66.6 bits (161), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 39/58 (67%), Gaps = 1/58 (1%)

Query: 770  YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            Y+LYA++NH G +G GHY A+ K     +WY F+DS   P  ++ + S AAYVLFY+R
Sbjct: 2033 YDLYAVSNHMGALGGGHYIANAKH-SNGKWYTFNDSICKPAAQESIHSPAAYVLFYQR 2089



 Score = 40.4 bits (93), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 58  GPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQL 117
           GP +   L++ R ++ L +++WN   SWY     +AR +++    Q  + V++YP+ +Q 
Sbjct: 869 GPLLKPGLVKNRQFVYLTEKIWNLFSSWYTCPTEVARPIVADPSGQG-VRVDLYPISIQF 927

Query: 118 L 118
            
Sbjct: 928 F 928


>gi|291393659|ref|XP_002713461.1| PREDICTED: ubiquitin thioesterase 19 isoform 2 [Oryctolagus
           cuniculus]
          Length = 1360

 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 116/296 (39%), Positives = 154/296 (52%), Gaps = 65/296 (21%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G TGL+NLGNTCFMNS IQ L +T E   +F +  +  EIN+ NPLG             
Sbjct: 537 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 596

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+++KPY +
Sbjct: 597 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 656

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGRPDE VA+E W  H  RNDS IVD+ QGQYKS LVCPVC KVS+TFDPF+YL +
Sbjct: 657 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 716

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQS-----EEL 460
           PL     + + V  F  +  + P  + V+V      ++       + SL QS     E L
Sbjct: 717 PL-PQKQKVLPVFYFAREPHSKPVKFLVSV-----SKESSSASEVLDSLSQSVHVKPENL 770

Query: 461 KVAEIQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQLIHRLQ 512
           ++AE+  +   R FL  P  SL T+   D L  + +  P+L K + V L++  R Q
Sbjct: 771 RLAEVIKNRFHRVFL--PSHSLDTVSPSDVLLCFELLSPELAKERVVVLEVQQRPQ 824



 Score =  153 bits (386), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 93/263 (35%), Positives = 135/263 (51%), Gaps = 25/263 (9%)

Query: 581  PSGEAHSNSSSNIAK-EDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 1002 PAGERVSRPEAAVPGYQHPSEAMNAHTPQFFIYKIDASNREQRLEDKGD---------TP 1052

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
            + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 1053 LELGDDCSLALVWRNNERLPEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 1112

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM-KHKLETFVNFPIH 751
            E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+   + + K+   V FP+ 
Sbjct: 1113 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSFRSFIWRDKINDLVEFPVR 1172

Query: 752  DFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFDD 804
            + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FDD
Sbjct: 1173 NLDLSKFCIGQKEEQLPNYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFDD 1232

Query: 805  SHISPINEDDVKSAAAYVLFYRR 827
            S ++ ++E  V +  AYVLFYRR
Sbjct: 1233 STVTTVDESQVVTRYAYVLFYRR 1255


>gi|224613346|gb|ACN60252.1| Ubiquitin carboxyl-terminal hydrolase 4 [Salmo salar]
          Length = 647

 Score =  175 bits (444), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 102/260 (39%), Positives = 145/260 (55%), Gaps = 20/260 (7%)

Query: 297 TPEFARYFREDYRREINWQNPLGMVELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEE 356
            P+F+ Y ++D +            ELLAFL+DGLHEDLNRVK KPY+  +DA GR DE 
Sbjct: 43  APQFSGYQQQDSQ------------ELLAFLMDGLHEDLNRVKKKPYLALQDAGGRKDEI 90

Query: 357 VADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMT 416
           VA E W NH  RNDSIIVD+  G +KSTLVCP C KVSVTFDPF YL+LPL     RTM 
Sbjct: 91  VAKEAWTNHRLRNDSIIVDIFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPMKKDRTME 150

Query: 417 VTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFL-- 474
           V +   D  + P+ Y V VPK G   DL   L  +  +  +E + VA++ NH   +    
Sbjct: 151 VFLVRIDPQSRPTQYRVVVPKLGSVTDLCSALSRLSGIP-AENMVVADVYNHRFHKIYRR 209

Query: 475 DDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVS 534
           DD    L+ I + D +  Y V +   +++ L +  R +  +     T +    +G PL+ 
Sbjct: 210 DD---GLNQIMEKDDIFVYEVTEEDAESMNLPVYFRERHSKHTGGSTGTML--FGQPLLI 264

Query: 535 SISRDDVISSGKIQSTVQRM 554
           ++ R ++ +    +  ++R+
Sbjct: 265 TVPRQNLAADMLYEKVLERI 284



 Score =  155 bits (392), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 89/200 (44%), Positives = 127/200 (63%), Gaps = 20/200 (10%)

Query: 637 STSIVVYVDW---SQKLL------EKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLE 687
           +T   V +DW   S+KL       E Y  H  E++L+  K     KKA    ++L  C+E
Sbjct: 428 NTHSTVAIDWDSDSKKLCYDDQEAEAYEKH--ESMLQAPK-----KKAT---VALRECIE 477

Query: 688 AFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVN 747
            F   E L   D WYCP CK+ +QA+KK DLW LP +LV+HLKRFSY+R  + KL+T V+
Sbjct: 478 LFTTMETLGEHDPWYCPTCKKHQQATKKFDLWSLPRILVVHLKRFSYNRCWRDKLDTVVD 537

Query: 748 FPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHI 807
           FP+ D N++++V +  +    +Y+L A++NHYGGMG GHYTA+ K   + +W+ FDDS +
Sbjct: 538 FPVRDLNMSEFVCDPKAG-PYVYDLIAVSNHYGGMGGGHYTAYGKNKADGKWHYFDDSSV 596

Query: 808 SPINEDDVKSAAAYVLFYRR 827
           S  +ED + + AAYVLFY+R
Sbjct: 597 SAASEDQIVTKAAYVLFYQR 616


>gi|167533999|ref|XP_001748678.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772919|gb|EDQ86565.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1627

 Score =  175 bits (444), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 138/475 (29%), Positives = 215/475 (45%), Gaps = 121/475 (25%)

Query: 38  PSGIDNSDLVNDA----TAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLA 93
           P  IDN  L   A    T  D GA   +   +   +D++++  E W  L +WYGGGP ++
Sbjct: 431 PGRIDNESLCLSAHRRSTRSDWGA--RLRPDVSVKKDFVIVSAEAWTALSAWYGGGPVIS 488

Query: 94  RKVISSGLSQTELAVEVYPLRLQLLVMPRGECSTIR------------------ISKKET 135
           R ++++  + + L VE++P+ ++++     +   +                   ISK ET
Sbjct: 489 RPLVANRQTAS-LEVELFPINVKVMHYAPVKAGRLALASDNDEKLSVTLLFYTDISKMET 547

Query: 136 IGEL------HRRACSIFYLNLEQIC-IWDYYGHRKHALMNDMDRTLDDANIQMDQDILV 188
           +  +      H+R  +    N +    +WD+   +   L+++ D T+++A I     +L+
Sbjct: 548 LESVTNTILRHKRDMTFERSNTKAAARLWDFKNPKHPILLSETDLTVEEAQITDGHTLLL 607

Query: 189 EVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTS 248
           EV +                A+    S ++  ++S+L+           S + + +++  
Sbjct: 608 EVCN----------------ADLSWPSEMLAVARSNLN-----------SADDAHDVAMD 640

Query: 249 PNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDY 308
           P   S  D    L S G+T         GL NLGNTC+MN+A+QCL HT     YF E Y
Sbjct: 641 P---STVDRHTLLKSDGIT---------GLSNLGNTCYMNAALQCLNHTSPLKAYF-EHY 687

Query: 309 RR--EINWQNPLGMV--------------------------------------------- 321
               E+N  N LG                                               
Sbjct: 688 HHLAELNMDNVLGYQGIIAKRYGDLILQLSEGRRSVAPVKFRAAVQKYAERFSGNQQHDS 747

Query: 322 -ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQ 380
            ELLAF+LD LHEDLNRV  KPY++ KD++GRPD  VA E+W NH+ARN SI+VD+  GQ
Sbjct: 748 QELLAFVLDALHEDLNRVTEKPYVERKDSEGRPDAVVAAEHWQNHVARNRSIMVDLFHGQ 807

Query: 381 YKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTV 435
            +S + C  C   SVTFDP    +LPL +  + T+   +   DGSA P  Y + +
Sbjct: 808 LRSEMRCKECGFASVTFDPASSWTLPLPSEGSSTVETLLHRLDGSA-PVKYALQM 861



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 71/127 (55%), Gaps = 4/127 (3%)

Query: 641  VVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTK-KARTE-PLSLYTCLEAFLREEPLVPE 698
            +V +DW  K    Y     E   +  K+  V + ++R E P+++  CL++F++ E +  +
Sbjct: 1215 LVALDWDSKAFHLYYQSQAE--YQSLKDESVRELRSRAEEPVTMADCLKSFIKAEDMTKD 1272

Query: 699  DMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKY 758
            D WYC  CKE R A KKLD+W +P  LV+HLKRF     +  K    V  P+H+F+   Y
Sbjct: 1273 DTWYCSNCKEHRDAVKKLDIWSIPPFLVVHLKRFQQVNGLWRKSNKVVQVPLHNFDPWPY 1332

Query: 759  VANKNSS 765
             A+ +++
Sbjct: 1333 SAHHHAT 1339



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 3/67 (4%)

Query: 762  KNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDV--KSAA 819
            K+ +  +LY+LYA+  H G +G GHY A+ +     +WY FDDS    + E +V  +S A
Sbjct: 1507 KDVNSPRLYDLYAIVLHMGILGGGHYVAYAR-GKSGKWYLFDDSSCREVPESEVEKQSKA 1565

Query: 820  AYVLFYR 826
            AY+LFYR
Sbjct: 1566 AYLLFYR 1572


>gi|384247322|gb|EIE20809.1| peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, partial
           [Coccomyxa subellipsoidea C-169]
          Length = 380

 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 105/262 (40%), Positives = 132/262 (50%), Gaps = 68/262 (25%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLG------------- 319
           GL GL NLGNTCFMNS++QCL H     R F    Y+R++N  NPLG             
Sbjct: 1   GLAGLSNLGNTCFMNSSVQCLAHAAPLVRVFLTGAYKRDLNPDNPLGNKGELAEAFGSLM 60

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               ELLAFLLDGLHEDLNRV+ KPY++
Sbjct: 61  KLLWQGGVGSVSPKGFKAALARFAPQFGGYSQQDSQELLAFLLDGLHEDLNRVRQKPYVE 120

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
             DA+GRPD+ VA E W N+  RNDS++VD  QG YKSTLVCP C+  SV FDPFMYLSL
Sbjct: 121 EADAEGRPDKVVAAEAWDNYRKRNDSVVVDHFQGLYKSTLVCPQCSFSSVKFDPFMYLSL 180

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKH---------GRCRDLIQVLGNICSLKQ 456
           PL ++ TRT+ +T+           Y    P+          GRC++ ++    +  L  
Sbjct: 181 PLPSSKTRTLYITL----------IYAFLQPEQLDAADSWYCGRCKEHVRAEKKL-DLWS 229

Query: 457 SEELKVAEIQNHSIQRFLDDPL 478
             EL V  ++  S  R   D L
Sbjct: 230 LPELLVVHLKRFSYSRHSRDKL 251



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 74/144 (51%), Positives = 105/144 (72%), Gaps = 2/144 (1%)

Query: 684 TCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLE 743
           T + AFL+ E L   D WYC +CKE  +A KKLDLW LPE+LV+HLKRFSYSR  + KL+
Sbjct: 193 TLIYAFLQPEQLDAADSWYCGRCKEHVRAEKKLDLWSLPELLVVHLKRFSYSRHSRDKLD 252

Query: 744 TFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFD 803
             V+FP+   +L+ ++  +      +Y+LYA++NH+GG+G GHYTA+ + +D++ W+ FD
Sbjct: 253 APVHFPLSALDLSSFLL-REQDVAPVYDLYAVSNHFGGLGGGHYTAYCR-MDDDGWHCFD 310

Query: 804 DSHISPINEDDVKSAAAYVLFYRR 827
           DSH+SP +E  V+S AAY+LFYRR
Sbjct: 311 DSHVSPADESSVQSKAAYLLFYRR 334


>gi|348511390|ref|XP_003443227.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 43-like
           [Oreochromis niloticus]
          Length = 1205

 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 173/648 (26%), Positives = 288/648 (44%), Gaps = 130/648 (20%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFR-EDYRREINWQNPLGMV----------- 321
           G+ GL N GNTCFMN+ +QCL +T   A Y   E Y+ +++     G+V           
Sbjct: 125 GVLGLKNHGNTCFMNAVVQCLSNTDLLAEYLGLERYKMDMSQTRMNGVVKSDETRLVRGE 184

Query: 322 ------------------------------------------ELLAFL---LDGLHEDLN 336
                                                     + L FL   LD +HED+ 
Sbjct: 185 VTEHLASLIRALWTLEYTPQLSVDFKATVSKYGSQFRGNSQHDALEFLLWLLDRVHEDVI 244

Query: 337 RVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVT 396
              H    K+K A G+P   +   +   H            Q QYKS+L CP C K S T
Sbjct: 245 LASHNNNNKTK-APGKP--RIQHSFVQEHF-----------QAQYKSSLTCPHCLKQSNT 290

Query: 397 FDPFMYLSLPLQATTTRTMTVT-VFTSDGSALPSTYTVTVPKHGRC---RDLIQVLGNIC 452
           FDPF+ +SLP+    TR + V  VF++ G        + VP  G     R L+   G I 
Sbjct: 291 FDPFLCISLPIPLRQTRPLCVVLVFSTKGQRYLRV-GLAVPLFGSVAFLRRLVADEGKI- 348

Query: 453 SLKQSEELKVAEIQNHSIQR-FLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRL 511
                +++ + E+ +   QR F D+    L++I ++D + A++ P L  +    ++    
Sbjct: 349 ---SPDQVILTEVYSTGFQRSFFDED--DLTSIAENDVIYAFQAPPLYIRGGSARISGPE 403

Query: 512 QEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESL-MHADSF 570
            ++ P +   +S++   G P+   +   +   +G  Q  V R   PFL +E   +  D  
Sbjct: 404 GQRLPPSGTLSSEFLNQGAPVKILLLVCNAAGAG--QQAV-RFGPPFLMREDRSISWDQL 460

Query: 571 DPS--SMVTTVDPSGEAHSNSSS--NIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVE 626
             S  S +  +  +G    N+    NI     S   +   P        +    +  +V 
Sbjct: 461 QQSILSKLYYLMINGAQAQNTRVLFNIRVVGGSVFYSYLSPQ-------DGQPLYHPAV- 512

Query: 627 GDKTIRIPSSSTS--IVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYT 684
            D+ +++  S     + + ++W  ++ +    +  E   EV K+    +  + + +  Y+
Sbjct: 513 -DRALKLCGSGGPPHVKLIIEWEHRIKDCLFGNIKE---EVVKDAESVRNQQQQHVQQYS 568

Query: 685 -----CLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
                C + + +EE L P+D W CP CK+ +Q   K+ LW LP++L++HLKRF      +
Sbjct: 569 CTLDECFQLYTKEEQLAPDDAWKCPHCKQLQQGMVKMSLWTLPDILILHLKRFRQVGERR 628

Query: 740 HKLETFVNFPIHDFNLTKYVANKN-------------SSRRQ-------LYELYALTNHY 779
           +KL TFV+FP+   ++T +V +++              SRR        LY+LYA+ NH+
Sbjct: 629 NKLTTFVHFPLVGLDMTPHVVHRSHGAHQHPPQPGWKQSRRPDLAPPDYLYDLYAVCNHH 688

Query: 780 GGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           GGM  GHYTA+ +   + +WY++DDS   P+ E +V +  AY+LFY+R
Sbjct: 689 GGMHGGHYTAYCRNSVDGQWYSYDDSSAEPVPEAEVCTRGAYILFYQR 736


>gi|307103883|gb|EFN52140.1| hypothetical protein CHLNCDRAFT_139272 [Chlorella variabilis]
          Length = 1046

 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 97/233 (41%), Positives = 119/233 (51%), Gaps = 53/233 (22%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHT-PEFARYFREDYRREINWQNPLGM-------- 320
           G + GL GL NLGNTCFMNS++QCL H+ P    +    Y+R++N  NPL +        
Sbjct: 251 GRARGLAGLGNLGNTCFMNSSLQCLAHSLPLMQTFLTGAYKRDLNKDNPLSLGGKLALAF 310

Query: 321 ---------------------------------------VELLAFLLDGLHEDLNRVKHK 341
                                                   ELLAFLLDGLHEDLNR+  K
Sbjct: 311 GALMDKLWRGGVGHVSPKLFKWQLAKFCPQFSGYAQEDSQELLAFLLDGLHEDLNRITDK 370

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
           PYI+ KD+DGRPDEEVA E WAN+  RNDS+IVD  QG Y+S L CP C   SV      
Sbjct: 371 PYIEDKDSDGRPDEEVAAEAWANYRRRNDSVIVDAFQGLYRSVLTCPQCEYQSVK----- 425

Query: 402 YLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSL 454
           YLSLPL ++  R +T T    DG+  P TY + VPK      L   +  +  L
Sbjct: 426 YLSLPLPSSKMRGVTFTAVFVDGTVAPRTYGIEVPKSATVGQLYAGIAELLGL 478



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 87/213 (40%), Positives = 129/213 (60%), Gaps = 16/213 (7%)

Query: 631 IRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKAR--TEPLSLYTCLEA 688
           + +P     +++  +W     + Y+ H L +  +      + +K R   + ++L  CLE 
Sbjct: 739 LEVPEDGQPLLLVAEWQDAAGQLYDPHPLLDAEKDASALALAEKQRDGGKSVTLAECLET 798

Query: 689 FLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNF 748
           FL+ E L  ED WYC +CK+  QA KKLDLW LP+VLV+HLKRFSYSR  + KL+T V+F
Sbjct: 799 FLQPEQLDAEDRWYCGKCKQHVQADKKLDLWSLPDVLVVHLKRFSYSRYSRDKLDTLVDF 858

Query: 749 PIHDFNLTKYVANK-------------NSSRRQLYELYALTNHYGGMGSGHYTAHIKLLD 795
           P+ D ++T Y+ ++             + +R   Y+LYA++NHYGGMG GHYTA+ ++  
Sbjct: 859 PLRDLDMTPYLRSRQQHAHPAQQQQQSDPARSTRYDLYAVSNHYGGMGGGHYTAYCRMPG 918

Query: 796 -ENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
               W+ FDD H+  + E  VK++AAYVLFYRR
Sbjct: 919 ASGGWHTFDDGHVGRMEESGVKTSAAYVLFYRR 951


>gi|74183361|dbj|BAE36566.1| unnamed protein product [Mus musculus]
          Length = 306

 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 103/215 (47%), Positives = 137/215 (63%), Gaps = 14/215 (6%)

Query: 615 DESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF-KNGPVTK 673
           D S++ FD     D+ +R+   S    + +DW   L ++Y   F EN  E F K+  V  
Sbjct: 55  DTSHIRFD-----DRQLRLDERS---FLALDWDPDLKKRY---FDENAAEDFEKHESVEY 103

Query: 674 KARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF 732
           K    P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VLV+HLKRF
Sbjct: 104 KPPKRPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRF 163

Query: 733 SYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIK 792
           SYSR M+ KL+T V+FPI D ++++++ N N+   + Y L A++NHYGGMG GHYTA  K
Sbjct: 164 SYSRYMRDKLDTLVDFPISDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGGHYTAFAK 222

Query: 793 LLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             D+ +WY FDDS +S  +ED + S AAYVLFY+R
Sbjct: 223 NKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 257


>gi|254571443|ref|XP_002492831.1| Ubiquitin carboxyl-terminal hydrolase [Komagataella pastoris GS115]
 gi|238032629|emb|CAY70652.1| Ubiquitin carboxyl-terminal hydrolase [Komagataella pastoris GS115]
          Length = 1146

 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 164/566 (28%), Positives = 236/566 (41%), Gaps = 139/566 (24%)

Query: 67  EGRDYI---LLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYP--LRLQLL 118
           +G D++   +LP  V+ QL SWYG   G   + R VI+      EL +EVYP   RL L+
Sbjct: 98  DGEDFVEYEILPYTVFQQLVSWYGLFSGLQPIQRIVIAR--KDGELELEVYPCYFRLHLM 155

Query: 119 VMPRG--ECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLD 176
              R   + +   +S+  TI +L   A   F        +W                 +D
Sbjct: 156 DNERNSLDINNFILSRYSTIRDLKYHATERFNTEFYHSRLW----------------LVD 199

Query: 177 DANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSK---SSLSIAGGWSA 233
           D NI                +N   +I  + F + K   +LVE  +    +L  AG    
Sbjct: 200 DPNI----------------SNLPLTITVSSFEKIKFKKLLVEKIEDFDKTLEEAG---- 239

Query: 234 SKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGA--SVGLTGLLNLGNTCFMNSAI 291
                      +++   +   +   ++   S +T + A  S GL GL NLGNTC+MNSA+
Sbjct: 240 -----------LNSCHLVVEYKLKKDSEWPSDITCKPAKLSTGLVGLTNLGNTCYMNSAL 288

Query: 292 QCLVHTPEFARYFRED-YRREINWQNPLG------------------------------- 319
           QCL+H PE + YF  D Y+ EIN  NPLG                               
Sbjct: 289 QCLMHIPELSNYFLYDFYKEEINVDNPLGNGGRLAIAFGSLIHTTLGPKKQIVTYATPKD 348

Query: 320 -------------------MVELLAFLLDGLHEDLNRVKHKPYIKSKD------ADGRPD 354
                                ELLAFLLDGLHEDLNR+  KPY+   +       D    
Sbjct: 349 FKLTLGRFNSMFLGYHQQDSQELLAFLLDGLHEDLNRILKKPYLDKPELKDHLVQDKEAV 408

Query: 355 EEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRT 414
            ++A++ W+ H  RNDSII D+  G YKSTLVCPVC K+S+TFDPF  L+LPL       
Sbjct: 409 RQLAEDCWSQHKMRNDSIITDLFVGLYKSTLVCPVCQKISITFDPFNDLTLPLPVDKKWY 468

Query: 415 MTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFL 474
             +  F   G   P    V + K      L   + +   +  + +L  A+I N    +  
Sbjct: 469 HQIIFFPETG--YPKALDVELDKSSTFDHLKNYVSSKLQVPIN-DLIGADIFNSQFYKNF 525

Query: 475 D--DPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQ-----WKA 527
           +  DP ++   I D        +     K VF Q+ H+  +       T S       K 
Sbjct: 526 EANDPDLNYLPISD--------LISSGDKTVFYQVKHKPGDLVVPVFNTLSDDGGRYAKP 577

Query: 528 YGTPLVSSISRDDVISSGKIQSTVQR 553
           +G P + +IS D+  S G I+  ++R
Sbjct: 578 FGLPFLITISEDESFSFGSIRDKLER 603



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 64/164 (39%), Positives = 109/164 (66%), Gaps = 1/164 (0%)

Query: 664  EVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPE 723
            E+ +N  + ++   + ++L  CL+ F + E L   D+WYCP CK+ RQA+K +++W+ P+
Sbjct: 853  ELIQNKKLIEEKLNKNIALQECLDIFSKPELLGENDLWYCPNCKDHRQATKTIEIWKTPD 912

Query: 724  VLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMG 783
            +L IHLKRF   RS   K++  V+FPI   ++++YV N  +   ++Y+L+A+ NH+GG+G
Sbjct: 913  ILTIHLKRFENQRSFSDKIDAVVDFPIEALDMSEYVVNPETG-DEIYDLFAVDNHFGGLG 971

Query: 784  SGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             GHYT+++K   +++WY FDD+ +S    +     +AY+LFYRR
Sbjct: 972  GGHYTSYVKNHIDHKWYYFDDARVSAAEPEQAIKGSAYLLFYRR 1015


>gi|328353160|emb|CCA39558.1| ubiquitin carboxyl-terminal hydrolase 4/11/15 [Komagataella
           pastoris CBS 7435]
          Length = 1202

 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 164/566 (28%), Positives = 236/566 (41%), Gaps = 139/566 (24%)

Query: 67  EGRDYI---LLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYP--LRLQLL 118
           +G D++   +LP  V+ QL SWYG   G   + R VI+      EL +EVYP   RL L+
Sbjct: 98  DGEDFVEYEILPYTVFQQLVSWYGLFSGLQPIQRIVIAR--KDGELELEVYPCYFRLHLM 155

Query: 119 VMPRG--ECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLD 176
              R   + +   +S+  TI +L   A   F        +W                 +D
Sbjct: 156 DNERNSLDINNFILSRYSTIRDLKYHATERFNTEFYHSRLW----------------LVD 199

Query: 177 DANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSK---SSLSIAGGWSA 233
           D NI                +N   +I  + F + K   +LVE  +    +L  AG    
Sbjct: 200 DPNI----------------SNLPLTITVSSFEKIKFKKLLVEKIEDFDKTLEEAG---- 239

Query: 234 SKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGA--SVGLTGLLNLGNTCFMNSAI 291
                      +++   +   +   ++   S +T + A  S GL GL NLGNTC+MNSA+
Sbjct: 240 -----------LNSCHLVVEYKLKKDSEWPSDITCKPAKLSTGLVGLTNLGNTCYMNSAL 288

Query: 292 QCLVHTPEFARYFRED-YRREINWQNPLG------------------------------- 319
           QCL+H PE + YF  D Y+ EIN  NPLG                               
Sbjct: 289 QCLMHIPELSNYFLYDFYKEEINVDNPLGNGGRLAIAFGSLIHTTLGPKKQIVTYATPKD 348

Query: 320 -------------------MVELLAFLLDGLHEDLNRVKHKPYIKSKD------ADGRPD 354
                                ELLAFLLDGLHEDLNR+  KPY+   +       D    
Sbjct: 349 FKLTLGRFNSMFLGYHQQDSQELLAFLLDGLHEDLNRILKKPYLDKPELKDHLVQDKEAV 408

Query: 355 EEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRT 414
            ++A++ W+ H  RNDSII D+  G YKSTLVCPVC K+S+TFDPF  L+LPL       
Sbjct: 409 RQLAEDCWSQHKMRNDSIITDLFVGLYKSTLVCPVCQKISITFDPFNDLTLPLPVDKKWY 468

Query: 415 MTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFL 474
             +  F   G   P    V + K      L   + +   +  + +L  A+I N    +  
Sbjct: 469 HQIIFFPETG--YPKALDVELDKSSTFDHLKNYVSSKLQVPIN-DLIGADIFNSQFYKNF 525

Query: 475 D--DPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQ-----WKA 527
           +  DP ++   I D        +     K VF Q+ H+  +       T S       K 
Sbjct: 526 EANDPDLNYLPISD--------LISSGDKTVFYQVKHKPGDLVVPVFNTLSDDGGRYAKP 577

Query: 528 YGTPLVSSISRDDVISSGKIQSTVQR 553
           +G P + +IS D+  S G I+  ++R
Sbjct: 578 FGLPFLITISEDESFSFGSIRDKLER 603



 Score =  156 bits (394), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 64/164 (39%), Positives = 109/164 (66%), Gaps = 1/164 (0%)

Query: 664  EVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPE 723
            E+ +N  + ++   + ++L  CL+ F + E L   D+WYCP CK+ RQA+K +++W+ P+
Sbjct: 853  ELIQNKKLIEEKLNKNIALQECLDIFSKPELLGENDLWYCPNCKDHRQATKTIEIWKTPD 912

Query: 724  VLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMG 783
            +L IHLKRF   RS   K++  V+FPI   ++++YV N  +   ++Y+L+A+ NH+GG+G
Sbjct: 913  ILTIHLKRFENQRSFSDKIDAVVDFPIEALDMSEYVVNPETG-DEIYDLFAVDNHFGGLG 971

Query: 784  SGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             GHYT+++K   +++WY FDD+ +S    +     +AY+LFYRR
Sbjct: 972  GGHYTSYVKNHIDHKWYYFDDARVSAAEPEQAIKGSAYLLFYRR 1015


>gi|47208151|emb|CAF93184.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1677

 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 113/306 (36%), Positives = 158/306 (51%), Gaps = 71/306 (23%)

Query: 274  GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLG------------- 319
            G TGL+NLGNTCFMNS IQ L +T E   YF +  +  EIN  NPLG             
Sbjct: 722  GFTGLVNLGNTCFMNSVIQSLSNTRELRDYFLDRAFEGEINCSNPLGTGGRLAIGFAVLL 781

Query: 320  ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                                E +AFLLDGLHEDLNR+++KPY +
Sbjct: 782  RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 841

Query: 346  SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
            + D+DGR DE VADE W  H  RNDS IVD+ QGQ+KS LVCP+C+KVS+TFDPF+YL +
Sbjct: 842  TVDSDGRLDEVVADEAWQRHKMRNDSFIVDLFQGQFKSKLVCPMCSKVSITFDPFLYLPV 901

Query: 406  PLQATTTRTMTVTVFTSDGSALP--------------STYTVTVPK-HGRCRDLIQVLGN 450
            PL     + ++V  F  +    P                ++V+V K +    ++++ +  
Sbjct: 902  PL-PQKQKVLSVYYFAKEPHKKPIKASLPCIASVLLRKRFSVSVSKENSHTAEVLESISR 960

Query: 451  ICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PKLVK-KAVFLQ 506
               +K +E L++AE+  +  QR FL  P  SL T+   D L  + +   ++ K K V L+
Sbjct: 961  SVRVK-AENLRLAEVGKNRFQRMFL--PSHSLDTVSSSDMLFCFELLSKEMAKEKVVLLR 1017

Query: 507  LIHRLQ 512
            +  +LQ
Sbjct: 1018 VQQKLQ 1023



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/216 (35%), Positives = 111/216 (51%), Gaps = 60/216 (27%)

Query: 671  VTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLK 730
            +++ AR    +L  CL  F + E L PE+ WYCP+C++ R+ASK+L LWRLP VL+I LK
Sbjct: 1344 LSETARAGHFTLEQCLNLFTKPEVLAPEEAWYCPKCQQHREASKQLLLWRLPNVLIIQLK 1403

Query: 731  RFSYSRSM--KHKLETFVNFPIH------------DF---NLTKY-VANKNSSRRQLYEL 772
            RFS+ RS   + K+   V+FPI             DF   +L+++ +  K+  ++ +Y+L
Sbjct: 1404 RFSF-RSFIWRDKINDMVDFPIRQLVPWPLLDGRFDFRNLDLSRFCIGMKDEMQQPVYDL 1462

Query: 773  YALTNHYGGMGSGHYTAHIKLL-DENR--------------------------------- 798
            YA+ NHYGGM  GHYTA+ +L  D+N                                  
Sbjct: 1463 YAVINHYGGMIGGHYTAYARLPSDKNSQRSDVGQCAPPAPAPSPPPPAVLLRGGPRSPAV 1522

Query: 799  -------WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
                   W  FDDS ++ + E  V +  AYVLFYRR
Sbjct: 1523 PRFFPAGWRLFDDSTVTMVEESQVVTRYAYVLFYRR 1558


>gi|320163863|gb|EFW40762.1| ubiquitin specific protease 41 [Capsaspora owczarzaki ATCC 30864]
          Length = 1177

 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 128/416 (30%), Positives = 188/416 (45%), Gaps = 88/416 (21%)

Query: 165 HALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSS 224
           H  +N++D  L D   ++ +    ++L        +  I DN F E +A+S L   +   
Sbjct: 321 HEKLNNLDEALVDFK-RLQKAFPAKLLYQTKSATLEKRIHDNPFREPEATSGLSSLTSKL 379

Query: 225 LSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNT 284
            S+A             SS +   P     R             +    GLTGL NLGNT
Sbjct: 380 ASVA-------------SSYLRPVPPPPLGR------------LQKTVPGLTGLQNLGNT 414

Query: 285 CFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV---------------------- 321
           CFMNS +QCL    E   YF  D +R+ IN Q+ LGM                       
Sbjct: 415 CFMNSVLQCLSAARELRDYFLSDAFRQHINKQSTLGMQGQMAEAYSEFSKHLWSGEYQYI 474

Query: 322 -------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEE 356
                                    E ++F LDGLHED+N +  KPY++  D + RPDE 
Sbjct: 475 APHQLKQVSNKFATMFSGFGQHDSQEFMSFFLDGLHEDVNLIGKKPYLE--DVERRPDES 532

Query: 357 ---VADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTR 413
              +AD  W  H  R++S IVD+ QGQYKST+VCP C++VSV FDPFMYLSLP+    TR
Sbjct: 533 DASMADRAWGQHKLRDNSHIVDLFQGQYKSTVVCPECDRVSVKFDPFMYLSLPIPTLQTR 592

Query: 414 TMTVTVFTSDGSALPSTY----TVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHS 469
            M V V  ++ +A P        VTVP  G    +++ +  +  +  + +L + E   + 
Sbjct: 593 KMGVLVSLAETAARPQAQLVRCCVTVPLTGTVLAILEAIAAMLGVSSARKLVLCEYDRYR 652

Query: 470 IQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFL----QLIHRLQEQEPGAAQT 521
           ++R  D+   ++  I D   L AY +P L +    L    +L++  +E E   A++
Sbjct: 653 LRRVFDE-REAVQRIYDYQDLVAYELPSLAELPAHLIEAGRLVNARREHEAEVAKS 707



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/182 (34%), Positives = 102/182 (56%), Gaps = 32/182 (17%)

Query: 678  EPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRS 737
            E ++L  CL  F +EE L  ++ WYC +C++ +QA+K + LWRLP++L++ LKRFS+SR 
Sbjct: 989  EKITLQKCLSLFTKEEKLGVDEAWYCSKCQKHQQATKSMTLWRLPKLLIVQLKRFSFSRI 1048

Query: 738  MKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL--- 794
             + KL + V FP+ + +L+ YV         +Y+L+A++NHYG    GHYTA  K     
Sbjct: 1049 YRDKLNSLVEFPLTNLDLSDYVQGAEHDHTPVYDLFAVSNHYGMAFGGHYTAFTKYSRRG 1108

Query: 795  -----------------------------DENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
                                          +++W+ FDDSH+S  + ++++++ AYVL Y
Sbjct: 1109 EYVVPRENHDLVASRGAGTVPSDPLPAHEHDDQWFEFDDSHVSRKSANEIQTSNAYVLVY 1168

Query: 826  RR 827
            RR
Sbjct: 1169 RR 1170


>gi|427794179|gb|JAA62541.1| Putative ubiquitin c-terminal hydrolase, partial [Rhipicephalus
           pulchellus]
          Length = 1130

 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 100/270 (37%), Positives = 142/270 (52%), Gaps = 51/270 (18%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGM------------ 320
           G TGL NLGNTCFMN+ +QCL +T EF  YF    ++ E+N  NPLGM            
Sbjct: 400 GYTGLDNLGNTCFMNAVLQCLANTREFRDYFLSATFQGELNRDNPLGMHGELAVAFAVLV 459

Query: 321 -----------------------------------VELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+ +KPY++
Sbjct: 460 SWLWSGKQRSFAPDRLKRLISIKASQFTGFAQHDAQEFMAFLLDGLHEDLNRIHNKPYVE 519

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
             +++GRPD  VADE W+N+  RNDSI+VD+ QGQYKST++CP C+KVS++FDPF+YL++
Sbjct: 520 RVESNGRPDSVVADESWSNYKLRNDSIVVDLFQGQYKSTVICPKCHKVSISFDPFLYLTV 579

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
           PL     R   V  F  D  ++P    V +    + +DL + +     +   + L++ E+
Sbjct: 580 PL-PKRQRVFVVHFFALDPQSVPVKLRVRLNHDAKIQDLKEEIFKKTKV-SPKNLRLLEV 637

Query: 466 QNHSIQRFLDDPLISLSTIKDDDHLAAYRV 495
            N  I +       SL  +   D + A+ V
Sbjct: 638 YNRRIYKVYGREE-SLVGVTPKDQIFAFEV 666



 Score =  145 bits (367), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 69/158 (43%), Positives = 103/158 (65%), Gaps = 10/158 (6%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM- 738
            ++L  CL  F   E L P++ WYCP C+E RQA+K+  LWRLP VLVI LKRFS++RS+ 
Sbjct: 899  ITLDQCLRLFTEPEVLDPQEAWYCPGCREHRQATKEFSLWRLPVVLVIQLKRFSFTRSIF 958

Query: 739  KHKLETFVNFPIHDFNLTKYVANKNSS--RRQLYELYALTNHYGGMGSGHYTAHIKLLD- 795
            + K++  V+FP++  +++ Y     +S     +Y+L+A+TNH+GGM  GHYTA  + +D 
Sbjct: 959  RDKIDKMVDFPVYGLDMSPYYCGPGTSDGNPPIYDLFAVTNHHGGMLGGHYTAFARCIDP 1018

Query: 796  ------ENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
                  E  W  FDDS +  +++  V +A+AY+LFYRR
Sbjct: 1019 VDTRLSEIGWRLFDDSRVVDVSDPRVVTASAYMLFYRR 1056


>gi|427794181|gb|JAA62542.1| Putative ubiquitin c-terminal hydrolase, partial [Rhipicephalus
           pulchellus]
          Length = 1119

 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 100/270 (37%), Positives = 142/270 (52%), Gaps = 51/270 (18%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGM------------ 320
           G TGL NLGNTCFMN+ +QCL +T EF  YF    ++ E+N  NPLGM            
Sbjct: 389 GYTGLDNLGNTCFMNAVLQCLANTREFRDYFLSATFQGELNRDNPLGMHGELAVAFAVLV 448

Query: 321 -----------------------------------VELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+ +KPY++
Sbjct: 449 SWLWSGKQRSFAPDRLKRLISIKASQFTGFAQHDAQEFMAFLLDGLHEDLNRIHNKPYVE 508

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
             +++GRPD  VADE W+N+  RNDSI+VD+ QGQYKST++CP C+KVS++FDPF+YL++
Sbjct: 509 RVESNGRPDSVVADESWSNYKLRNDSIVVDLFQGQYKSTVICPKCHKVSISFDPFLYLTV 568

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
           PL     R   V  F  D  ++P    V +    + +DL + +     +   + L++ E+
Sbjct: 569 PL-PKRQRVFVVHFFALDPQSVPVKLRVRLNHDAKIQDLKEEIFKKTKV-SPKNLRLLEV 626

Query: 466 QNHSIQRFLDDPLISLSTIKDDDHLAAYRV 495
            N  I +       SL  +   D + A+ V
Sbjct: 627 YNRRIYKVYGREE-SLVGVTPKDQIFAFEV 655



 Score =  145 bits (367), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 69/158 (43%), Positives = 103/158 (65%), Gaps = 10/158 (6%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM- 738
            ++L  CL  F   E L P++ WYCP C+E RQA+K+  LWRLP VLVI LKRFS++RS+ 
Sbjct: 888  ITLDQCLRLFTEPEVLDPQEAWYCPGCREHRQATKEFSLWRLPVVLVIQLKRFSFTRSIF 947

Query: 739  KHKLETFVNFPIHDFNLTKYVANKNSS--RRQLYELYALTNHYGGMGSGHYTAHIKLLD- 795
            + K++  V+FP++  +++ Y     +S     +Y+L+A+TNH+GGM  GHYTA  + +D 
Sbjct: 948  RDKIDKMVDFPVYGLDMSPYYCGPGTSDGNPPIYDLFAVTNHHGGMLGGHYTAFARCIDP 1007

Query: 796  ------ENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
                  E  W  FDDS +  +++  V +A+AY+LFYRR
Sbjct: 1008 VDTRLSEIGWRLFDDSRVVDVSDPRVVTASAYMLFYRR 1045


>gi|427794621|gb|JAA62762.1| Putative ubiquitin c-terminal hydrolase, partial [Rhipicephalus
           pulchellus]
          Length = 1124

 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 100/270 (37%), Positives = 142/270 (52%), Gaps = 51/270 (18%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGM------------ 320
           G TGL NLGNTCFMN+ +QCL +T EF  YF    ++ E+N  NPLGM            
Sbjct: 394 GYTGLDNLGNTCFMNAVLQCLANTREFRDYFLSATFQGELNRDNPLGMHGELAVAFAVLV 453

Query: 321 -----------------------------------VELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AFLLDGLHEDLNR+ +KPY++
Sbjct: 454 SWLWSGKQRSFAPDRLKRLISIKASQFTGFAQHDAQEFMAFLLDGLHEDLNRIHNKPYVE 513

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
             +++GRPD  VADE W+N+  RNDSI+VD+ QGQYKST++CP C+KVS++FDPF+YL++
Sbjct: 514 RVESNGRPDSVVADESWSNYKLRNDSIVVDLFQGQYKSTVICPKCHKVSISFDPFLYLTV 573

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
           PL     R   V  F  D  ++P    V +    + +DL + +     +   + L++ E+
Sbjct: 574 PL-PKRQRVFVVHFFALDPQSVPVKLRVRLNHDAKIQDLKEEIFKKTKV-SPKNLRLLEV 631

Query: 466 QNHSIQRFLDDPLISLSTIKDDDHLAAYRV 495
            N  I +       SL  +   D + A+ V
Sbjct: 632 YNRRIYKVYGREE-SLVGVTPKDQIFAFEV 660



 Score =  145 bits (367), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 69/158 (43%), Positives = 103/158 (65%), Gaps = 10/158 (6%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM- 738
            ++L  CL  F   E L P++ WYCP C+E RQA+K+  LWRLP VLVI LKRFS++RS+ 
Sbjct: 893  ITLDQCLRLFTEPEVLDPQEAWYCPGCREHRQATKEFSLWRLPVVLVIQLKRFSFTRSIF 952

Query: 739  KHKLETFVNFPIHDFNLTKYVANKNSS--RRQLYELYALTNHYGGMGSGHYTAHIKLLD- 795
            + K++  V+FP++  +++ Y     +S     +Y+L+A+TNH+GGM  GHYTA  + +D 
Sbjct: 953  RDKIDKMVDFPVYGLDMSPYYCGPGTSDGNPPIYDLFAVTNHHGGMLGGHYTAFARCIDP 1012

Query: 796  ------ENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
                  E  W  FDDS +  +++  V +A+AY+LFYRR
Sbjct: 1013 VDTRLSEIGWRLFDDSRVVDVSDPRVVTASAYMLFYRR 1050


>gi|260799513|ref|XP_002594740.1| hypothetical protein BRAFLDRAFT_224157 [Branchiostoma floridae]
 gi|229279976|gb|EEN50751.1| hypothetical protein BRAFLDRAFT_224157 [Branchiostoma floridae]
          Length = 915

 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 113/342 (33%), Positives = 169/342 (49%), Gaps = 53/342 (15%)

Query: 213 ASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGAS 272
           A SV  EP +   +                +++S  P       +  + G++G   +   
Sbjct: 126 AGSVSQEPVRQPAATTATKKPPPPPPAPPPTKLSQKPTCLVPPVTHGSWGAAGDVEKTCE 185

Query: 273 VGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLG------------ 319
            G TGL NLGNTCFMN+ +Q L +T E   + + + ++ ++N +N LG            
Sbjct: 186 PGFTGLDNLGNTCFMNATLQALANTRELRDFCQSNKFKEDLNTENVLGSGGKLAIAFACV 245

Query: 320 -----------------------------------MVELLAFLLDGLHEDLNRVKHKPYI 344
                                                E LAFLLDGLHEDLNR++ KPY 
Sbjct: 246 LRTLWSGTRTSYAPSRLKSIIATKAHQFTGFAQHDAQEFLAFLLDGLHEDLNRIQDKPYT 305

Query: 345 KSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLS 404
            + ++DGRPD EVADE W  ++ RNDS +VD+ QGQ+KSTLVCPVC+KVSVTFDPF YLS
Sbjct: 306 TTVESDGRPDAEVADEAWRIYMKRNDSFMVDLFQGQFKSTLVCPVCSKVSVTFDPFAYLS 365

Query: 405 LPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAE 464
           +PL     RT++V   + + +  P  ++V +       DL   +G     K ++ L+V E
Sbjct: 366 VPL-PKKQRTISVYFQSRNPANKPVLFSVPLAVDAAVEDLKLAIGRRTETK-AQNLRVFE 423

Query: 465 IQNHSIQRFLDDPLISLSTIKDDDHLAAYRV--PKLVKKAVF 504
           +    I  F  +   +LS ++ +DH+    V   + V++AV+
Sbjct: 424 VYKSGIH-FWYNRGDTLSNVQANDHIMVCEVLDQQQVREAVY 464



 Score =  139 bits (351), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 64/158 (40%), Positives = 97/158 (61%), Gaps = 9/158 (5%)

Query: 679 PLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM 738
           P++L  CL+ F   E L PE+ WYCP CK+ R+A+K++ LWRLP  L+I LKRFS+   +
Sbjct: 753 PITLQQCLQLFTEPETLAPEEAWYCPSCKQHREATKQMSLWRLPHTLIIQLKRFSFRNLI 812

Query: 739 -KHKLETFVNFPIHDFNLTKYVANK--NSSRRQLYELYALTNHYGGMGSGHYTAHIKLLD 795
            + K+   V FP+   +++ Y  +         +Y+LYA  +H+GG+  GHYTA+ +L D
Sbjct: 813 WRDKITKMVQFPLTSLDMSGYCGSDIGPGEAPPIYDLYATVDHHGGLLGGHYTAYAQLPD 872

Query: 796 EN------RWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            +       W  FDDSH+  ++E +V   +AY+LFYRR
Sbjct: 873 TSGSSNAIGWRLFDDSHVRAVHETEVMRPSAYLLFYRR 910


>gi|395331753|gb|EJF64133.1| cysteine proteinase [Dichomitus squalens LYAD-421 SS1]
          Length = 1301

 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 103/276 (37%), Positives = 138/276 (50%), Gaps = 55/276 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM------------ 320
           G  GL N+GNTCFMNSA+QCLVHTPE   YF    Y+ E+N  NPLGM            
Sbjct: 405 GTLGLGNMGNTCFMNSALQCLVHTPELVDYFLTGVYQEELNPDNPLGMHSAIAQAFGAML 464

Query: 321 -------------------------------------VELLAFLLDGLHEDLNRVKHKPY 343
                                                 EL+AFLLDGLHEDLNRV  KPY
Sbjct: 465 TRIWDNESTLSSYTPREFKQTLQRFAPQFSGYQQHDSQELVAFLLDGLHEDLNRVLKKPY 524

Query: 344 IKSKDADGRPDEEV---ADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPF 400
           ++  D +G  D+E+   A+  W  ++ RNDS++VD+ QGQY+STLVCP CNKVS+TFDPF
Sbjct: 525 VEKPDWEGGGDKELVELANLSWEGYMKRNDSVVVDLFQGQYQSTLVCPECNKVSITFDPF 584

Query: 401 MYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEEL 460
           MYL+LPL         +     D         + + +    + + Q+LG   +    E L
Sbjct: 585 MYLTLPLPVQKKWQHDILYVPWDLEKPHVKIPIEITRDASFKAVRQLLGRWMN-SNPENL 643

Query: 461 KVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVP 496
              EI NH   + LDD  + +  + + D +  + +P
Sbjct: 644 LTLEIFNHRFYKNLDD-TVGVDDMSEQDTIVCFELP 678



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/267 (33%), Positives = 143/267 (53%), Gaps = 32/267 (11%)

Query: 581  PSGEAHSNSSSNIAKEDASSSKAVTLPN-LPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
            P G  +++ SSN  + D    +A T  + + L+  D   + FD  V   KT      S  
Sbjct: 849  PYGVGYNSYSSNPGRYDTWEQRAATAKDGVLLRQHDAFYLEFDNPV---KTYYFGDESNH 905

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPED 699
                  W   L  K++      L+   K     KK   + ++L  CL+ F +EE L  +D
Sbjct: 906  ------WEYALWNKFDEFVHPELVASRKAASTHKK---KGITLQDCLDEFTKEEKLGEDD 956

Query: 700  MWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYV 759
            +WYCP+CK+ +QA+K+ DLW++P++LV+HLKRFS SR ++ K++TFV+FP+   +LT  V
Sbjct: 957  LWYCPRCKKHQQATKRFDLWKVPDILVVHLKRFSNSRMLRDKIDTFVDFPLEGLDLTSMV 1016

Query: 760  ANKNSSRR-------------------QLYELYALTNHYGGMGSGHYTAHIKLLDENRWY 800
              ++  +R                    +Y+L+A+  H GG+G GHY A+       +WY
Sbjct: 1017 GERSVGKRLQETGVDVESLGLHDLEEPLVYDLFAVDEHLGGLGGGHYRAYALNHATGKWY 1076

Query: 801  NFDDSHISPINEDDVKSAAAYVLFYRR 827
            +FDDS+++P   +   ++ AY+LFYRR
Sbjct: 1077 HFDDSYVTPARPEQAVNSNAYLLFYRR 1103


>gi|406606361|emb|CCH42352.1| putative ubiquitin carboxyl-terminal hydrolase 12 [Wickerhamomyces
            ciferrii]
          Length = 1327

 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 77/162 (47%), Positives = 113/162 (69%), Gaps = 5/162 (3%)

Query: 671  VTKKAR----TEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLV 726
            V KK R     E +SL +CL+ F + E L  ED+WYC  CKE RQASK++ +W  P++L 
Sbjct: 1009 VAKKRRIDTKNESISLDSCLKTFSKPEVLGEEDLWYCSDCKEHRQASKQISIWSTPDILT 1068

Query: 727  IHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANK-NSSRRQLYELYALTNHYGGMGSG 785
            IHLKRF+  RS   K+   VNFPI  F+++ Y+++  NS+   +Y+L+A+ NH+GG+  G
Sbjct: 1069 IHLKRFTSQRSFSDKISKVVNFPIEGFDVSPYISSPVNSNEETIYDLFAVDNHWGGISGG 1128

Query: 786  HYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            HYT+ +K   +N+WYN++DSH+SP + +D+ SA AY+LFYRR
Sbjct: 1129 HYTSKVKNFVDNQWYNYNDSHVSPTSVEDLISAEAYLLFYRR 1170



 Score =  149 bits (375), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 93/263 (35%), Positives = 124/263 (47%), Gaps = 59/263 (22%)

Query: 272 SVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM---------- 320
           S G  GL NLGN+C+MNSA+QCLVH PE  +YF  D +  E+N  NPLG           
Sbjct: 367 SNGCIGLTNLGNSCYMNSALQCLVHIPELTQYFLFDCFENELNPDNPLGFNGDIAKSFGR 426

Query: 321 ----------------------------------------VELLAFLLDGLHEDLNRV-- 338
                                                    E  A+LLDGLHEDLNR+  
Sbjct: 427 LIHLLFDKKSFRNSAIAPRDFKNIIGRYNSMFHGYLQQDSQEFFAYLLDGLHEDLNRIIN 486

Query: 339 ---KHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSV 395
                KP + SK+A     + +A++ W  H  RNDS+I+D+  G YKSTLVCP C+KVS+
Sbjct: 487 KPATEKPELNSKNATIEEVQTLAEQSWVQHKLRNDSVIIDLFVGLYKSTLVCPDCSKVSI 546

Query: 396 TFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLK 455
           TFDPF  L+LPL   T  +  + +F   G     ++ V +PK      L Q +    SL 
Sbjct: 547 TFDPFSDLTLPLPTETFWSFKILLFLDKGPM--KSFEVELPKGASYNKLKQYVAEKLSLN 604

Query: 456 QSEELKVAEIQNHSIQRFLDDPL 478
            +  L   +I N       +DP+
Sbjct: 605 VN-YLAAMDIFNGQFYMNFEDPV 626


>gi|281342720|gb|EFB18304.1| hypothetical protein PANDA_016924 [Ailuropoda melanoleuca]
          Length = 1225

 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 154/615 (25%), Positives = 248/615 (40%), Gaps = 120/615 (19%)

Query: 290 AIQCLVHTPEFARYFREDYRR---EINWQNPLGMVELLAFLLDGLHEDLNRVKHKPYIKS 346
           A+  L +TP+ +R F+    +   +    +     E L +LLD +HEDLN        +S
Sbjct: 66  ALWTLEYTPQHSRDFKSIVSKNALQYRGNSQHDAQEFLLWLLDRVHEDLNHA----VKQS 121

Query: 347 KDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLP 406
                +P  E              + + ++ Q QY+S+L CP C K S TFDPF+ +SLP
Sbjct: 122 GQPPLKPPSETDMMPEGPSFPVCSTFVQELFQAQYRSSLTCPHCQKQSNTFDPFLCISLP 181

Query: 407 LQATTTRTMTVTVFTSDGSALPSTYTVTVPKHG---RCRDLIQVLGNICSLKQSEELKVA 463
           +    TR + VTV      +      V VP  G   R R+ + +   I     ++++ + 
Sbjct: 182 IPLPHTRPLYVTVVYQGKCSHCMRIGVAVPLSGTVARLREAVSMETKI----PTDQIVLT 237

Query: 464 EIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQ----------------L 507
           E+      R   D    L T+ + D + A+  P++ +    L                 L
Sbjct: 238 EMYYDGFHRSFCD-TDDLETVHESDCIFAFETPEIFRPEGILSQRGIHLNSNLNHLKFAL 296

Query: 508 IHRLQEQEPGAAQ------------------------TTSQWKAYGTPLVSSISRDDVIS 543
            HRL   +  A Q                        T  Q K +G P V  +  +  I+
Sbjct: 297 DHRLSSMQAAAKQGKIDLPPTRAENDKIVLLVCNRACTGQQGKRFGLPFV--LHLEKTIA 354

Query: 544 SGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKA 603
              +Q  +   +  FL+    +    F                             S + 
Sbjct: 355 WDLLQKEILEKMKYFLRPTVCIQVCPF-----------------------------SLRV 385

Query: 604 VTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLL 663
           V++  +   L  E       +VE       P  +  + + V+W +   E  +  F+    
Sbjct: 386 VSVVGITYLLPQEEKPLCHPTVERALKSCGPGGTAHVKLVVEWDK---ETKDFLFVNTED 442

Query: 664 EVFKNGPVTKKAR-----TEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDL 718
           E   +    +  R      +  +L  C + + +EE L P+D W CP CK+ +Q S  L L
Sbjct: 443 EYIPDAESVRLQRERHHQPQTCTLSQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSL 502

Query: 719 WRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSS-----------RR 767
           W LP+VL+IHLKRF      + KL+  V FP+   ++T +V  ++ S           RR
Sbjct: 503 WTLPDVLIIHLKRFRQEGDRRVKLQNMVKFPLTGLDMTPHVVKRSQSSWSLPSHWSPWRR 562

Query: 768 Q----------LYELYALTNHYGGMGSGHYT-----AHIKLLDENRWYNFDDSHISPINE 812
                      +Y+LYA+ NH+G M  GHYT     A+ K   +  WY FDDS +  ++E
Sbjct: 563 PYGLGRDPEDYVYDLYAVCNHHGTMQGGHYTGSFLAAYCKNSVDGLWYCFDDSDVQQLSE 622

Query: 813 DDVKSAAAYVLFYRR 827
           D+V +  AY+LFY+R
Sbjct: 623 DEVCTQTAYILFYQR 637


>gi|375152326|gb|AFA36621.1| putative ubiquitin carboxyl terminal hydrolase, partial [Lolium
           perenne]
          Length = 150

 Score =  173 bits (438), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 82/128 (64%), Positives = 109/128 (85%), Gaps = 5/128 (3%)

Query: 703 CPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANK 762
           CP CKE RQASKKLDLWRLPE+LV+HLKRFSYSR MK+KL+TFVNFPIH  +++KY   K
Sbjct: 1   CPSCKEHRQASKKLDLWRLPEILVVHLKRFSYSRYMKNKLDTFVNFPIHHLDMSKYA--K 58

Query: 763 NSSRRQ---LYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAA 819
           ++SR     +YELY++ NHYGG+G GHY+A+ KL++E+ WY+FDDSH+S +NE++ +++A
Sbjct: 59  HTSRGDQPPIYELYSVINHYGGLGGGHYSAYAKLVEEDNWYHFDDSHVSSVNEEETRTSA 118

Query: 820 AYVLFYRR 827
           AY+LFYRR
Sbjct: 119 AYLLFYRR 126


>gi|409081365|gb|EKM81724.1| hypothetical protein AGABI1DRAFT_118809 [Agaricus bisporus var.
           burnettii JB137-S8]
          Length = 1253

 Score =  173 bits (438), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 113/348 (32%), Positives = 170/348 (48%), Gaps = 72/348 (20%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM------------ 320
           G  GL N+GNTCFMNSA+QCLVHT E + YF    +  E+N  NPLGM            
Sbjct: 343 GTLGLSNMGNTCFMNSALQCLVHTKELSDYFLSGVFEDELNADNPLGMGGAIAEAFGSLL 402

Query: 321 -------------------------------------VELLAFLLDGLHEDLNRVKHKPY 343
                                                 EL+AFLLDGLHEDLNR+  KPY
Sbjct: 403 HRIWADSGPSTSYSPREFKQVLQKFAPQFSGYQQHDSQELVAFLLDGLHEDLNRILKKPY 462

Query: 344 IKSKDADGRPDEEV---ADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPF 400
           ++  D +G  + E+   A + W  ++ RNDS+IVD+ QGQY+STLVCP C KVS+TFDPF
Sbjct: 463 VEKPDWEGGGNLELVQLAKKSWDGYLLRNDSVIVDLFQGQYQSTLVCPECGKVSITFDPF 522

Query: 401 MYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEEL 460
           MYL+LP+ A    + T+     D +       + + +    +D+  +LG   ++ + + L
Sbjct: 523 MYLTLPIPAEKKWSHTIYYIPFDPAQSHLKIPIEINRDASFKDVRNLLGRWLNV-EGDNL 581

Query: 461 KVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEP---- 516
              EI NH   + LDD ++ +  + ++D +  Y +P   +++       + Q ++P    
Sbjct: 582 LTLEIFNHRFYKNLDDSVM-VGDMTENDVIVCYGLPCNAQQS----RTFKRQPEDPLILP 636

Query: 517 -------GAAQ--TTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRML 555
                  GA Q   +S+   +G P V ++S D+      + + V   L
Sbjct: 637 VFLCDAKGAGQWAYSSRVSLFGYPTVVAVSPDEATDVNALYTVVMERL 684



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 72/176 (40%), Positives = 106/176 (60%), Gaps = 19/176 (10%)

Query: 671  VTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLK 730
              K+ + + LSL  CL+ F +EE L  +D+WYCPQCK+ +QA+K+ DLW+ P+VLV+HLK
Sbjct: 861  AAKEKKNKGLSLQDCLDEFTKEEELGEDDLWYCPQCKKHQQATKRFDLWKAPDVLVVHLK 920

Query: 731  RFSYSRSMKHKLETFVNFPIHDFNLTKYVANK-------------------NSSRRQLYE 771
            RFS SR+++ K++ F++FPI D NL   V  +                   N     +Y+
Sbjct: 921  RFSNSRTLRDKIDAFIDFPIQDLNLEDMVRERRVAKALQAEGVNIEELNLTNLDEPLIYD 980

Query: 772  LYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            L+ +  H GG+G GHY A++       WY+FDDS + P   +D  +A AY+LFYRR
Sbjct: 981  LFGVDEHMGGLGGGHYRAYVLNHANEEWYHFDDSFVRPAKAEDAVNADAYLLFYRR 1036



 Score = 42.7 bits (99), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 6/108 (5%)

Query: 22  SLLEHFNSAGSSASKRPSGIDNSDL--VNDATAEDPGAGPEIVDTLLEGRDYILLPQEVW 79
           S  + +  A +    +   +   DL  V++A   DP     +   L++G D   +P +VW
Sbjct: 69  SWWKRWRKACTGEEDKEGAVTEQDLGPVDNAPLLDPDGN--LKQGLIDGLDVEFVPHDVW 126

Query: 80  NQLHSWYGGG-PTLARKVISSGLSQTELAVEVYPLRLQLLVMPRGECS 126
             L  WYG    +L R+V+  G ++ E  +E++P R ++L + R  C+
Sbjct: 127 RCLAIWYGEPLHSLPRRVVPRGAAK-EPTLELHPPRFRVLPLARPRCA 173


>gi|326430318|gb|EGD75888.1| hypothetical protein PTSG_11617 [Salpingoeca sp. ATCC 50818]
          Length = 1046

 Score =  172 bits (437), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 171/628 (27%), Positives = 271/628 (43%), Gaps = 110/628 (17%)

Query: 24  LEHFNSAGSSASKRPSG-IDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQL 82
            E +      + K P G IDNS L ++      G  P     L EG +  +L +E W QL
Sbjct: 58  FETWKRFAEGSQKEPPGPIDNSALFDEH-----GVKP----FLAEGYNVHILDEETWRQL 108

Query: 83  HSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQLLVMPRGECSTIRISKKETIGEL 139
            +WYG       + RK +   + + +  V++  LR+  ++    +   + +S+     +L
Sbjct: 109 VAWYGLVHPKQEVKRKTV---MREDKCVVDLAYLRVTAVLNGAEKGVVVDVSRTADFDQL 165

Query: 140 HRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNC 199
           H  A     +  +       +  R    +      +  A++   Q + VE   + +GT  
Sbjct: 166 HELAKQRLGIPADTTTRLRNFHLRMRGEVLSGKAKVGSASLYQKQMVCVETQAD-DGTWP 224

Query: 200 KSSIQDNGFAEKKASSVLVEPSKSS-----------LSIAGGWSASKGTSRNHSSEISTS 248
             +I+ +  AE   S+  V  S +            L+     +AS G+ R   +  + S
Sbjct: 225 SDAIEADSDAESATSATPVNGSGAEDDMDDDDALGPLTSPSAGAASVGSKRGALASTAPS 284

Query: 249 PNLASARDSDNTLGSSGV---------TTRGASV-------------GLTGLLNLGNTCF 286
            +  ++  +      +G+         T  GA+              G TGL NLGNTCF
Sbjct: 285 SSSFASSSTRGIGAGAGLASLPSASSSTGYGATSHALGSPVAGQPRQGRTGLTNLGNTCF 344

Query: 287 MNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM------------------------- 320
           MNSA+QCL HT    RYF E  Y+ ++N  NP+G                          
Sbjct: 345 MNSALQCLSHTLPLTRYFLEGPYKEDLNPDNPIGCGGRLAMAYRELIAQLWQGSARVITP 404

Query: 321 ----------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVA 358
                                  EL +FLLDGLHEDLNR++ KPY++ K+A+G  D E A
Sbjct: 405 REFKFAIGRFAPQFVGYQQHDSQELTSFLLDGLHEDLNRIRDKPYVEMKEAEGE-DAEAA 463

Query: 359 DEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVT 418
              W  H  RNDSIIVD+  GQ KSTLVCP CNKVS+TFDPFMYL +PL    T+   VT
Sbjct: 464 ALAWHRHKLRNDSIIVDLFHGQLKSTLVCPDCNKVSITFDPFMYLQVPLPENETKVFPVT 523

Query: 419 VFTSDGSALPSTYTVTVPK-HGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDP 477
           V   D +  P  Y V +PK  G    + Q L  +  +  S +  V ++    + + LD  
Sbjct: 524 VSFKDPNRPPKRYGVKLPKTTGTISMMCQELEKMTGVSAS-KFVVTDVYAGKVWKVLDFH 582

Query: 478 LISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSIS 537
             + S+I+  D L A+ + +     V    ++  ++         +  +    P   SI+
Sbjct: 583 EKT-SSIRTSDSLIAHELEETPADDVVALPVYFFRK------TAYNHMEKLRPPAAISIA 635

Query: 538 RDDVISSGKIQSTVQRMLSPFLKKESLM 565
           R+   +  K+ +T + ++ P+++  + M
Sbjct: 636 RN--TTGTKLAATARALVRPYVRTSAPM 661



 Score =  152 bits (384), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 84/243 (34%), Positives = 138/243 (56%), Gaps = 10/243 (4%)

Query: 587 SNSSSNIAKEDASSSKAVTLPNLPLQLVDE-SNVCFDLSVEGDKTIRIPSSSTSIVVYVD 645
           SNS+      D +  +   LP++ L + ++ +     L+ E    I + S    +++ V 
Sbjct: 743 SNSAEGEHSGDGADEEESGLPSMQLMMANKYAQTTKRLAPEA--KIELSSDLNDVLLIVI 800

Query: 646 WSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQ 705
              K ++  +  + E+   V +   VT  A    + L  CL+ +  +E L  ++MW CP 
Sbjct: 801 DDYKAVDFGDLLYPEDDASVGQGDEVTNGA----VPLTQCLDYYTSKERLTHDNMWRCPV 856

Query: 706 CKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSS 765
           CKE ++A K++++W+LP+ LVIHLKRFSY+   + KL+T V+FP+   +L  YV +    
Sbjct: 857 CKEPKEAEKQMEVWKLPDTLVIHLKRFSYNSWWRDKLDTLVDFPLEGLDLGPYVLDPQQH 916

Query: 766 RRQLYELYALTNHYGGMGSGHYTAHIKLLDEN-RWYNFDDSHISPINEDDVKSAAAYVLF 824
              +Y+LY ++NH GG+G GHYTA+   LD N RWY FDDS++  I   ++ S ++Y LF
Sbjct: 917 DSAVYDLYGVSNHMGGLGGGHYTAYC--LDTNGRWYEFDDSYVGEIAPKNIVSTSSYFLF 974

Query: 825 YRR 827
           Y+R
Sbjct: 975 YQR 977


>gi|395756437|ref|XP_002834134.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 32-like, partial
           [Pongo abelii]
          Length = 381

 Score =  172 bits (437), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 104/272 (38%), Positives = 143/272 (52%), Gaps = 54/272 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV----------- 321
           G TGL NLGNTCFMNS+IQC+ +T    +YF    +  E+N  NP+GM            
Sbjct: 30  GATGLSNLGNTCFMNSSIQCVSNTQPLTQYFISGRHLYELNRTNPIGMKGHMAKCYGDLV 89

Query: 322 ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                               ELLAFLLDGLHEDLNRV  KPY++
Sbjct: 90  QELWSGTQKSVAPLKLQWTIAKYAPRFNGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVE 149

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
            KD+DGRPD EVA E W NH+ RN SI+VD+  GQ +S + C  C  +SV FDPF +LSL
Sbjct: 150 LKDSDGRPDWEVAAEAWDNHLGRNRSIVVDLFHGQLRSQVKCKTCGHISVRFDPFNFLSL 209

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
           PL   +   + +TV   DG+  P  Y + +    +   L + L ++C+L  SE++ +AE+
Sbjct: 210 PLPMDSDMHLEITVIKLDGTT-PVRYGLRLNTDEKYTGLKKQLSDLCAL-NSEQILLAEV 267

Query: 466 QNHSIQRF-LDDPLISLSTIKDDDHLAAYRVP 496
            + +I+ F  D+  + LS       L A+ +P
Sbjct: 268 HDSNIKNFPQDNQKVGLSV---SGFLCAFEIP 296


>gi|405970379|gb|EKC35288.1| Ubiquitin carboxyl-terminal hydrolase 19 [Crassostrea gigas]
          Length = 1310

 Score =  172 bits (435), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 100/248 (40%), Positives = 125/248 (50%), Gaps = 50/248 (20%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM------------ 320
           G+TGL NLGNTCFMNS +Q L +T EF  YF E  ++ +IN  NPLGM            
Sbjct: 391 GMTGLDNLGNTCFMNSVLQALSNTTEFRDYFLESRFQNDINTDNPLGMGGKLAVSYAVLL 450

Query: 321 -----------------------------------VELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +AF LDGLHEDLNR+K KPY +
Sbjct: 451 RTLWSGKHYSYAPSKLKSLVGQKASQFNGFAQHDAQEFMAFFLDGLHEDLNRIKKKPYTE 510

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + D+DGR DE VADE W  +  RNDS IVD+ QGQYKS L CPVC K+S+TFDPF+YLSL
Sbjct: 511 TVDSDGRSDEVVADEAWEMYKKRNDSFIVDLFQGQYKSKLTCPVCGKISITFDPFLYLSL 570

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
           PL     R + V     +    P    + +PK      L +       +K S  ++V E 
Sbjct: 571 PL-PKKKRMLPVIFMWKEPYKKPLQLVLRLPKECTTEALKEEAAKKTGVKPS-AMRVFET 628

Query: 466 QNHSIQRF 473
               I +F
Sbjct: 629 YKGKIYKF 636



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 73/197 (37%), Positives = 112/197 (56%), Gaps = 15/197 (7%)

Query: 644  VDWSQKLLEKYNTHFLENLLEV-FKNGPVTKKARTEP---LSLYTCLEAFLREEPLVPED 699
            +DW  K  EKY+++ L    E+ +   P      TE    +++  C++ F   E L PE+
Sbjct: 992  IDW--KNHEKYDSYVLVQTKELEYTEDPTLTAQYTEETGNVNIQQCMDLFTEPEILSPEE 1049

Query: 700  MWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM-KHKLETFVNFPIHDFNLTKY 758
             WYCP CKE R+A+K++ +WRLP  L+I LKRFS+   + + K++  V FP+   +L+ Y
Sbjct: 1050 AWYCPSCKEHREATKQMSIWRLPHTLIIQLKRFSFRNFIWRDKIDKMVEFPVRGLDLSPY 1109

Query: 759  VANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLD-------ENRWYNFDDSHISPIN 811
                      +Y+LYA+ NHYGG+  GHYT+ ++  D       E  W   DDS ++ I+
Sbjct: 1110 TKIGADKSPPVYDLYAVVNHYGGILGGHYTSFVRTPDARDPTKNELDWRLCDDSRVNNIS 1169

Query: 812  -EDDVKSAAAYVLFYRR 827
             E +V S  AY+LFYR+
Sbjct: 1170 GERNVVSRGAYLLFYRK 1186


>gi|157120281|ref|XP_001653586.1| ubiquitin specific protease [Aedes aegypti]
 gi|108883099|gb|EAT47324.1| AAEL001540-PA [Aedes aegypti]
          Length = 904

 Score =  172 bits (435), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 153/578 (26%), Positives = 248/578 (42%), Gaps = 79/578 (13%)

Query: 298 PEFARYFR---EDYRREINWQNPLGMVELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPD 354
           PE++  F+   + Y  +          E L +LLD +HEDLN    + Y   K+  GR D
Sbjct: 62  PEYSSSFKAVVDRYGSQFRSSTQHDAQEFLFWLLDKVHEDLNTATKRKYKAIKNNYGRSD 121

Query: 355 EEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRT 414
           E +A E  ANHI  N S +  V Q Q++S+L CP C+K S TFDPF  +S+ L   T + 
Sbjct: 122 EVIAAETLANHIRCNSSFVQAVFQAQFRSSLTCPRCHKQSNTFDPFHCISVQLPQLTLQP 181

Query: 415 MTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFL 474
           + V V  +          + VP HG    +++   +  +    + + +AE+      R  
Sbjct: 182 VFVRVIYASQQPKQVQLGLGVP-HGSPVMVLREQLHADTGIAVDRMILAEVCEGGFSRVY 240

Query: 475 DDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVS 534
            D  + +S+I DD  +     P + +    + L      ++ G+ +     + +GTP   
Sbjct: 241 CDSHL-VSSIGDDGSVYCIESPPVAEGMTQIVLCITNGRRDVGSGEV----RRFGTPFCI 295

Query: 535 SISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIA 594
            ++RD  +S  ++Q  + + +S  LK E    +        +   DPS +A +   SN+ 
Sbjct: 296 VVNRD--VSYVELQKLLLKEMSSILKSEVFAFSTPMQEMFKMRLQDPSCDADTYLESNVE 353

Query: 595 KEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKY 654
               +    + L  LP    D       L +E     R  S  T   V  +   ++ EK 
Sbjct: 354 HPLFTEMIDLALSVLP---TDAGPAHVKLLIEWTNPERFFSDMTDPFVEHESVSQMKEKI 410

Query: 655 NTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASK 714
                                 +  L+L  CLE + + E L  ED W CP C++     K
Sbjct: 411 --------------------PGSSSLTLEQCLEHYTKAETLSAEDAWRCPHCQKYLPVVK 450

Query: 715 KLDLWRLPEVLVIHLKRFSYSR---SMKHKLETFVNFPIHDFNLTKYVA----------- 760
            L LW LP+++VIH KRF   +       KL T V FP+  F+++ ++A           
Sbjct: 451 TLGLWSLPDIMVIHFKRFRQQQLRGPQAAKLTTLVKFPLTGFDMSPHLARDSNAEASSVS 510

Query: 761 -------------------------NKNS-SRRQLYELYALTNHYGG-MGSGHYTAHIKL 793
                                    N+NS      Y+LYA+  H G  + +GHYTA  K 
Sbjct: 511 NGTEDNWSPWRKTINRYTKHSSNHYNQNSLPMDNRYDLYAVCYHQGDTLETGHYTAACKN 570

Query: 794 LDENRWYNFDDSHISPI-NE---DDVKSAAAYVLFYRR 827
             +++WY FDD  ++ + NE   +++ +  AY+LFY+R
Sbjct: 571 PYDHQWYKFDDQRVAQVPNERIQEEIVNNEAYILFYQR 608


>gi|302687378|ref|XP_003033369.1| hypothetical protein SCHCODRAFT_76094 [Schizophyllum commune H4-8]
 gi|300107063|gb|EFI98466.1| hypothetical protein SCHCODRAFT_76094 [Schizophyllum commune H4-8]
          Length = 1137

 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 162/570 (28%), Positives = 250/570 (43%), Gaps = 138/570 (24%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAE-DPGAGP 59
           W+Q W   V       TG+        + AG    K  + +    LV+ AT +  PG   
Sbjct: 18  WYQRWRRAV-------TGE-------VDKAGPVEEKDLAPVSAQSLVDSATGKLRPG--- 60

Query: 60  EIVDTLLEGRDYILLPQEVWNQLHSWYG--GGPTLARKVISSGLSQTELAVEVYPLRLQL 117
                L+E  D   L    + Q   WYG        R+VI  G  + E ++E+YP  + +
Sbjct: 61  -----LVEHEDVEYLTPAAYAQFVQWYGQPDATPPTRRVILRG-ERGETSLELYPPSITV 114

Query: 118 LVMPRGECSTIR------ISKKETIGELHRRACS-------------IFYLNL----EQI 154
             M +      R      +S   T+ +L   A               ++ L+     +++
Sbjct: 115 SSMSKLRSVNARPPHELSVSSTTTLRDLREAALRRVSQADPTTTTYRVWRLDSVPAGKKV 174

Query: 155 CIWDYYGHRKHA----LMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAE 210
           C+ ++  H   +    L+   DRT+++  ++ D  ++VE+                    
Sbjct: 175 CV-EFSAHDVSSYDGKLVEASDRTVEEEGLE-DAKLVVEL-------------------- 212

Query: 211 KKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRG 270
           ++  S LV   K+    + G  +  G    +S++ S+S +L   + +      +  +++ 
Sbjct: 213 QEYDSWLVPEEKNE---SEGMFSQGGFFDRYSAQSSSSSSLMKPKTTLGPFTRASTSSKP 269

Query: 271 A-SVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM-------- 320
           A   G TGL NLGNTCFMNSA+QCL H  E   YF    +++E+N  NPLGM        
Sbjct: 270 AREPGTTGLTNLGNTCFMNSALQCLAHQEELTEYFLSGVFKQELNPDNPLGMHGAIAEAF 329

Query: 321 ----------------------------------------VELLAFLLDGLHEDLNRVKH 340
                                                    EL+AFLLDGLHEDLNRV  
Sbjct: 330 GDLLQHIWARSSASSYSPRDFKMQLQRFAPQFSGYQQHDSQELVAFLLDGLHEDLNRVLK 389

Query: 341 KPYIKSKDADGRPDEEVAD---EYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTF 397
           KPY++  D +G  D E+A    + W  ++ RNDS+IVD+ QGQY+STLVCP C KVS+TF
Sbjct: 390 KPYVEKPDWEGGGDLELAQLAKKSWDGYMLRNDSVIVDLFQGQYQSTLVCPECQKVSITF 449

Query: 398 DPFMYLSLPL--QATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLK 455
           DPFMYL+LPL  Q+    T+    + SD   L     + +  +   RD+  ++G    + 
Sbjct: 450 DPFMYLTLPLPIQSKWKHTIIYVPYDSDKPHL--RVPMEISSNSSFRDVRTIIGRWMDVP 507

Query: 456 QSEELKVAEIQNHSIQRFLDD--PLISLST 483
             + L   E+ NH   + LDD  P+  +ST
Sbjct: 508 -PDNLLTMELFNHKFYKSLDDHTPVTDMST 536



 Score =  155 bits (393), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 72/175 (41%), Positives = 111/175 (63%), Gaps = 20/175 (11%)

Query: 672 TKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKR 731
           ++K R  P++L  CL+ F +EE L  +D+WYCPQCK+ +QA+K+ DLW+ P++LV+HLKR
Sbjct: 776 SRKPRG-PITLQDCLDEFTKEEQLGEDDLWYCPQCKKHQQATKRFDLWKTPDILVVHLKR 834

Query: 732 FSYSRSMKHKLETFVNFPIHDFNLT-----KYVANK--------------NSSRRQLYEL 772
           FS SR+++ K++ FV+FPI   +L      + VAN+              N+    LY+L
Sbjct: 835 FSNSRALRDKIDAFVDFPIEGLDLAGMAGERKVANRLKEEGVDASELNLGNAEEPLLYDL 894

Query: 773 YALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           +A+  H GG+G GHY A+    +  +WY+FDDS ++     D  ++ AY+LFYRR
Sbjct: 895 FAVDEHMGGLGGGHYRAYALNHETKKWYHFDDSFVTEAEAKDSVNSNAYLLFYRR 949


>gi|281206178|gb|EFA80367.1| peptidase C19 family protein [Polysphondylium pallidum PN500]
          Length = 499

 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 114/304 (37%), Positives = 148/304 (48%), Gaps = 76/304 (25%)

Query: 264 SGVTTRGASV----GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPL 318
           S  T+ G  +    G+ GL NLGNTCFMNS++QCL HT  F  YF    Y  +IN  NPL
Sbjct: 181 SNTTSNGKEIVMHKGVCGLSNLGNTCFMNSSVQCLAHTIPFVEYFLSGRYTSDINKVNPL 240

Query: 319 GMV----------------------------------------------ELLAFLLDGLH 332
           GM                                               +LL+FLLDGLH
Sbjct: 241 GMKGQIVEIFGKLMRDMWSGASYVVPKNLKWAIGKYAPQFSGISQQDSQDLLSFLLDGLH 300

Query: 333 EDLNRVKHKPYIKSKD-ADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCN 391
           EDLN+V  KPYI+ KD  + R D  VA+E W NH  RN S++V++ QGQYKSTLVC  C+
Sbjct: 301 EDLNKVIKKPYIEEKDDKETRDDSVVANEQWENHCKRNQSVVVNLFQGQYKSTLVCNQCS 360

Query: 392 KVSVTFDPFMYLSLPLQATTTRTMTVTVFTS----------------DGSALPSTYTVTV 435
           KVS+TFDPFM+++LP+   T R   + +F                  + S  P  Y + +
Sbjct: 361 KVSITFDPFMFVTLPIPVPTERLFEILLFRCKPTGPVGPDSTGVYCLNNSMAPIHYCLRL 420

Query: 436 PKHGRCRDLIQVLGNICSLKQSEE---LKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAA 492
            K    RD +Q L    S     E   L +AEI  + I  FL D   +LS I+D D +  
Sbjct: 421 NK----RDFVQTLRIELSKASGIETPCLALAEIFRNRIYTFLSDQK-NLSFIRDRDVIIG 475

Query: 493 YRVP 496
           Y +P
Sbjct: 476 YELP 479


>gi|226487496|emb|CAX74618.1| ubiquitin thiolesterase [Schistosoma japonicum]
          Length = 933

 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 141/482 (29%), Positives = 205/482 (42%), Gaps = 131/482 (27%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           WW  W  +V+            L+        ++ + P  +DNSD++ D          +
Sbjct: 56  WWAKWEVFVD------------LVSKSGIVDETSEEYPGKVDNSDILCDG---------K 94

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYGGGPT----LARKVISSGLSQTELAVEVYPLRLQ 116
           + + LL   D  L+P++VW     +YG   T      R+ I +  S     +E+YP    
Sbjct: 95  LKENLLLENDITLVPKDVWKLFVDFYGCVHTETSLFERRAIQAPKSA---EIEIYPPHYS 151

Query: 117 LLVMPRGECSTI----RISKKETIGEL------HRRACSIFYLNLEQICIWDYYGHRKHA 166
             +       T+       K +TI EL      H +      L+L       +    +  
Sbjct: 152 FYLNSPNSNPTLLTEGTYCKFQTIRELKLLVAQHLKMAPGLTLHL-----LIHNEQNEFE 206

Query: 167 LMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLS 226
            + D D T+++AN++ ++ I V+ L+  NG   +S I  +    K   SV   P    +S
Sbjct: 207 ELEDEDATIEEANLEREKVIYVQ-LEPKNGI--RSEIYVDNSRAKSIDSVKSRPELQMVS 263

Query: 227 IAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCF 286
           + G                 ++P L                      G+ GL NLGNTCF
Sbjct: 264 LHG-----------------SNPPLVP--------------------GVCGLNNLGNTCF 286

Query: 287 MNSAIQCLVHTPEFARYFRE-DYRREINWQNPLGMV------------------------ 321
           MNSA+QC+ + P    YF    ++ E+N +NPLG                          
Sbjct: 287 MNSALQCMSNVPALTSYFLSGKWKSELNIRNPLGSQGRIAIAYADLIKQLWSGTRAYAVP 346

Query: 322 -----------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVA 358
                                  ELL FLLDGLHEDLNR+  KPYI+ KD+DGRPD EVA
Sbjct: 347 REFKIEIARIARQFSGYAQHDTHELLVFLLDGLHEDLNRIHSKPYIEVKDSDGRPDIEVA 406

Query: 359 DEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVT 418
           +E W  + +RNDSIIVD+  GQ KST++CP C + SVTFDPF  L LP+Q      + V 
Sbjct: 407 NEAWQYYKSRNDSIIVDLFHGQLKSTVICPTCQRKSVTFDPFASLILPIQEVYKYLVRVY 466

Query: 419 VF 420
           V+
Sbjct: 467 VW 468



 Score =  133 bits (335), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 66/158 (41%), Positives = 90/158 (56%), Gaps = 2/158 (1%)

Query: 670 PVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHL 729
           PVT+  +T  L L  C E F   E L   D+WYC +CK  + A+KK DLW+LP+VLV+ L
Sbjct: 709 PVTRLNQT--LQLSDCFERFTDVEQLGSRDLWYCNRCKAEKPATKKFDLWKLPDVLVVQL 766

Query: 730 KRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTA 789
           KRF        K++T + FP+   NLT  V  K    + +Y+L A++NH G +G GHYTA
Sbjct: 767 KRFRSHLRFHDKIDTLLEFPLTGLNLTSRVLEKKPDEKFIYDLVAVSNHMGYLGGGHYTA 826

Query: 790 HIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
                  N WY FDDS     +   + +++AYVL Y R
Sbjct: 827 FALNAQTNLWYFFDDSSTRECDPSKIVTSSAYVLVYVR 864


>gi|66809747|ref|XP_638597.1| peptidase C19 family protein [Dictyostelium discoideum AX4]
 gi|60467205|gb|EAL65239.1| peptidase C19 family protein [Dictyostelium discoideum AX4]
          Length = 1089

 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 117/320 (36%), Positives = 152/320 (47%), Gaps = 71/320 (22%)

Query: 260 TLGSSGVTTRGASVG-LTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNP 317
           T   +G T    S G + GL NLGNTCFMNS+IQCL HT     YF    Y  +IN  NP
Sbjct: 386 TFEQNGSTKELISNGKVCGLSNLGNTCFMNSSIQCLAHTGPLVEYFLSGRYLGDINKTNP 445

Query: 318 LGMV----------------------------------------------ELLAFLLDGL 331
           LGM                                               ELL+FLLDGL
Sbjct: 446 LGMKGQIADIYGKLMKDMWSGSSCVAPKHLKWIIGKYAPQFSGISQQDSQELLSFLLDGL 505

Query: 332 HEDLNRVKHKPYIKSKDADGRPDEE--VADEYWANHIARNDSIIVDVCQGQYKSTLVCPV 389
           HEDLN+V  KPY + KD    P E+  VA+E W NHI RN SIIV++ QGQYKSTLVC  
Sbjct: 506 HEDLNKVIKKPYQEEKDEPKEPREDIVVANEQWDNHIKRNQSIIVNLFQGQYKSTLVCAK 565

Query: 390 CNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTS-------------------DGSALPST 430
           C+KVS+TFDP+M+++LP+   T R   V +F                     + +  P  
Sbjct: 566 CSKVSITFDPYMFVTLPIPVPTERLFDVLLFRRKPQMGSEALGPDPNGIYCLNNAMSPIK 625

Query: 431 YTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHL 490
           Y + +PK      L   L  I  + +S  + +AE   + I  FL+D   +L +IKD D  
Sbjct: 626 YCLKLPKREDVETLRVELSKIVGI-ESSCIALAETFKNRIYTFLNDQK-NLISIKDKDVT 683

Query: 491 AAYRVPKLVKKAVFLQLIHR 510
            AY +P        + ++HR
Sbjct: 684 IAYELPHAGDDISRIHVMHR 703



 Score =  139 bits (351), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 68/148 (45%), Positives = 102/148 (68%), Gaps = 4/148 (2%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQAS-KKLDLWRLPEVLVIHLKRFSYSRSM 738
            ++L  CL+ + + E L   D WYCPQCK   + S KKL+LW  P++LV+HLKRF Y    
Sbjct: 922  ITLNDCLQLYTKSEKLGTNDTWYCPQCKAHIEGSMKKLELWSAPKILVVHLKRFHYVHGH 981

Query: 739  KH-KLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDEN 797
            +H K+  FV+FP+ + +++++V NK S+   +Y+LYA++NH GGMGSGHYT+ IK  +++
Sbjct: 982  RHEKINAFVDFPLDNLDISQWVLNK-SNPPPIYQLYAVSNHMGGMGSGHYTSCIK-NNKD 1039

Query: 798  RWYNFDDSHISPINEDDVKSAAAYVLFY 825
            +WY   DS    I++  VK++ AYVLFY
Sbjct: 1040 QWYLISDSSYHAIDKSKVKTSDAYVLFY 1067



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 8/81 (9%)

Query: 35  SKRPSGIDNSDLV--NDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTL 92
           S +P  IDN +++  ND+  E     P +   + E  DY ++P  VW  L SWY GGP +
Sbjct: 102 SAKPESIDNREIIEGNDSEGE-----PIVSKRVTEKEDYEIIPNRVWKLLVSWYQGGPEI 156

Query: 93  ARKVISSGLSQTELAVEVYPL 113
            RKV+  G+ + EL VEV PL
Sbjct: 157 KRKVVELGV-RNELYVEVRPL 176


>gi|226487492|emb|CAX74616.1| ubiquitin thiolesterase [Schistosoma japonicum]
 gi|226487494|emb|CAX74617.1| ubiquitin thiolesterase [Schistosoma japonicum]
          Length = 919

 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 141/482 (29%), Positives = 205/482 (42%), Gaps = 131/482 (27%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
           WW  W  +V+            L+        ++ + P  +DNSD++ D          +
Sbjct: 42  WWAKWEVFVD------------LVSKSGIVDETSEEYPGKVDNSDILCDG---------K 80

Query: 61  IVDTLLEGRDYILLPQEVWNQLHSWYGGGPT----LARKVISSGLSQTELAVEVYPLRLQ 116
           + + LL   D  L+P++VW     +YG   T      R+ I +  S     +E+YP    
Sbjct: 81  LKENLLLENDITLVPKDVWKLFVDFYGCVHTETSLFERRAIQAPKSA---EIEIYPPHYS 137

Query: 117 LLVMPRGECSTI----RISKKETIGEL------HRRACSIFYLNLEQICIWDYYGHRKHA 166
             +       T+       K +TI EL      H +      L+L       +    +  
Sbjct: 138 FYLNSPNSNPTLLTEGTYCKFQTIRELKLLVAQHLKMAPGLTLHL-----LIHNEQNEFE 192

Query: 167 LMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLS 226
            + D D T+++AN++ ++ I V+ L+  NG   +S I  +    K   SV   P    +S
Sbjct: 193 ELEDEDATIEEANLEREKVIYVQ-LEPKNGI--RSEIYVDNSRAKSIDSVKSRPELQMVS 249

Query: 227 IAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCF 286
           + G                 ++P L                      G+ GL NLGNTCF
Sbjct: 250 LHG-----------------SNPPLVP--------------------GVCGLNNLGNTCF 272

Query: 287 MNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG-------------------------- 319
           MNSA+QC+ + P    YF    ++ E+N +NPLG                          
Sbjct: 273 MNSALQCMSNVPALTSYFLSGKWKSELNIRNPLGSQGRIAIAYADLIKQLWSGTRAYAVP 332

Query: 320 ---------------------MVELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVA 358
                                  ELL FLLDGLHEDLNR+  KPYI+ KD+DGRPD EVA
Sbjct: 333 REFKIEIARIARQFSGYAQHDTHELLVFLLDGLHEDLNRIHSKPYIEVKDSDGRPDIEVA 392

Query: 359 DEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVT 418
           +E W  + +RNDSIIVD+  GQ KST++CP C + SVTFDPF  L LP+Q      + V 
Sbjct: 393 NEAWQYYKSRNDSIIVDLFHGQLKSTVICPTCQRKSVTFDPFASLILPIQEVYKYLVRVY 452

Query: 419 VF 420
           V+
Sbjct: 453 VW 454



 Score =  133 bits (335), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 66/158 (41%), Positives = 90/158 (56%), Gaps = 2/158 (1%)

Query: 670 PVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHL 729
           PVT+  +T  L L  C E F   E L   D+WYC +CK  + A+KK DLW+LP+VLV+ L
Sbjct: 695 PVTRLNQT--LQLSDCFERFTDVEQLGSRDLWYCNRCKAEKPATKKFDLWKLPDVLVVQL 752

Query: 730 KRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTA 789
           KRF        K++T + FP+   NLT  V  K    + +Y+L A++NH G +G GHYTA
Sbjct: 753 KRFRSHLRFHDKIDTLLEFPLTGLNLTSRVLEKKPDEKFIYDLVAVSNHMGYLGGGHYTA 812

Query: 790 HIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
                  N WY FDDS     +   + +++AYVL Y R
Sbjct: 813 FALNAQTNLWYFFDDSSTRECDPSKIVTSSAYVLVYVR 850


>gi|281207388|gb|EFA81571.1| hypothetical protein PPL_05562 [Polysphondylium pallidum PN500]
          Length = 1086

 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 124/363 (34%), Positives = 174/363 (47%), Gaps = 74/363 (20%)

Query: 216 VLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGL 275
           ++++P  S++S     SA+ G +R  +       N  S   S+    S  +    +  GL
Sbjct: 395 MIMDPRASAMS----QSANGGANRQPNGANGHLENGNSNISSEQQSHSKEIVMHKSVCGL 450

Query: 276 TGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV------------- 321
           +   NLGNTCFMNS++QCL HT  FA YF    Y  +IN  NPLGM              
Sbjct: 451 S---NLGNTCFMNSSVQCLAHTTPFAEYFLSGRYTLDINKVNPLGMKGQIAEIFGKLMRD 507

Query: 322 ---------------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKD 348
                                            ELL+FLLDGLHEDLN+V  KPYI+ K+
Sbjct: 508 MWSGDTCVVPKNLKWAIGKYAPQFSGISQQDSQELLSFLLDGLHEDLNKVLKKPYIEEKE 567

Query: 349 ADGRPDEE--VADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLP 406
               P E+  VA E W NH+ RN S++V++ QGQYKSTLVC  C+KVS+TFDPFM+++LP
Sbjct: 568 ESKEPREDALVASEQWENHLKRNQSVVVNLFQGQYKSTLVCSQCSKVSITFDPFMFVTLP 627

Query: 407 LQATTTRTMTVTVFTS--------DGSALPSTYTVTVPKHGRC-----RDLIQVLG---N 450
           +   T R   V +F          D + +    +   P H  C     R+ +Q L    +
Sbjct: 628 IPVPTERLFEVLLFRCKPVGQLGPDSTGVYCLNSAMAPIH-YCLRLHKREFVQTLRIELS 686

Query: 451 ICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHR 510
             S  ++  L +AEI  + I  FL D   +LS IKD D +  Y +P        L ++ R
Sbjct: 687 KVSGIETPCLALAEIFRNRIYTFLSDQK-NLSFIKDRDVIIGYELPVAGDDVSRLHVMQR 745

Query: 511 LQE 513
            ++
Sbjct: 746 KKQ 748



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/187 (37%), Positives = 103/187 (55%), Gaps = 27/187 (14%)

Query: 642  VYVDWSQKLLEKY--NTHFLENLLEVFKNGPVTKKART-EPLSLYTCLEAFLREEPLVPE 698
            V +DW  ++  KY  +   +EN   V ++  V  KA     ++L  C   F R E L P 
Sbjct: 917  VTIDWRPEIF-KYLDDNDNIENTQLVKQDQSVAIKASMGSDINLNDCFSLFTRNEKLGPN 975

Query: 699  DMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKY 758
            D W+CPQCK                   IH++RF +    + K+  FV+FP+ + +L+K+
Sbjct: 976  DTWFCPQCK-------------------IHIERFQFLHRHE-KINAFVDFPLDNLDLSKW 1015

Query: 759  VANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSA 818
            V NK S    +Y+LYA++NH GGMG+GHYTA +K  + +RW+   DS    I+E  VK++
Sbjct: 1016 VLNK-SGVPPIYQLYAVSNHMGGMGAGHYTACVK--NRDRWFLISDSSYHLIDESAVKTS 1072

Query: 819  AAYVLFY 825
             AYVLFY
Sbjct: 1073 EAYVLFY 1079



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 49/81 (60%), Gaps = 4/81 (4%)

Query: 37  RPSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKV 96
           +P  I+N DL++    ED   G  I ++ LEG D+ ++PQ +W+ L SWY GGP + R V
Sbjct: 163 KPETINNRDLID---REDSEGGHIIAESRLEGEDFEIIPQRIWDILVSWYAGGPEIKRTV 219

Query: 97  ISSGLSQTELAVEVYPLRLQL 117
           I  G+   +L VEV P+ + +
Sbjct: 220 IEMGVRNEKL-VEVRPIVIMI 239


>gi|355568242|gb|EHH24523.1| Ubiquitin carboxyl-terminal hydrolase 43 [Macaca mulatta]
          Length = 1140

 Score =  171 bits (433), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 158/621 (25%), Positives = 270/621 (43%), Gaps = 129/621 (20%)

Query: 277 GLLNLGNTCFMNSAIQCLVHT---PEF---ARYFREDYRREINWQNPLGMVELLAFLLDG 330
           GL N GNTCFMN+ +QCL +T    EF    RY     R E+         E LA L+  
Sbjct: 165 GLKNHGNTCFMNAVVQCLSNTDLLAEFLALGRYRAAPGRAEV--------TEQLAALVRA 216

Query: 331 LHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSI-----IVDVCQGQYKSTL 385
           L       ++ P + ++  +     +   ++  N  +++D++     ++D      + + 
Sbjct: 217 LWTR----EYTPQLSAEFKNA--VSKYGSQFQGN--SQHDALEFLLWLLDRVHEDLEGSS 268

Query: 386 VCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTV--------FTSDGSALPSTYTVTVPK 437
             PV  K S TFDPF+ +SLP+    TR ++VT+        F   G A+P   TV V  
Sbjct: 269 RGPVLEK-SNTFDPFLCVSLPIPLRQTRFLSVTLVFPSKSQRFLRVGLAVPILSTVAV-- 325

Query: 438 HGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTIKDDDHLAAYRVP 496
               R ++   G +     ++E+ + E+     QR F D+    L+TI + D++ A++VP
Sbjct: 326 ---LRRMVAEEGGV----PADEVILVELYPSGFQRSFFDEE--DLNTIAEGDNVYAFQVP 376

Query: 497 K------LVKKAVFLQLIHRLQEQEP---------------------GAAQTTSQWKAYG 529
                  L    + L +  RL  +E                      G+ Q  S+   +G
Sbjct: 377 PSPSQGTLSAHPLALSVSPRLAAREGQRFSLSLHSESKVLILFCNLVGSGQQASR---FG 433

Query: 530 TPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNS 589
            P +  I  D  +S  ++Q ++   +   +K E+ +                      N 
Sbjct: 434 PPFL--IREDRAVSWAQLQQSILSKVRHLMKSEAPVQ---------------------NL 470

Query: 590 SSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQK 649
            S  +      S A +     L   D   +C   +V+    +R P     + + V+W   
Sbjct: 471 GSLFSIRVVGLSVACSY----LSPKDSRPLC-HWAVDRALHLRRPGGPPHVKLAVEWDSS 525

Query: 650 LLEKYNTHFLENLLEVFKN-GPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKE 708
           + E+   +  E   +   +     +  +    +L  C + + +EE L  +D W CP C+ 
Sbjct: 526 VKERLFGNLQEERAQDADSVWQQQQAHQQHSCTLDECFQFYTKEEQLAQDDAWKCPHCQV 585

Query: 709 RRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQ 768
            +Q   KL LW LP++L+IHLKRF      ++KL T V FP+   N+  +VA +++S   
Sbjct: 586 LQQGMVKLSLWTLPDILIIHLKRFCQVGERRNKLSTLVKFPLSGLNMAPHVAQRSTSPEA 645

Query: 769 ----------------------LYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSH 806
                                 LY+LYA+ NH+G +  GHYTA+ +   + +WY++DDS 
Sbjct: 646 GLGPWPSWKPPGCLPTSCPLDFLYDLYAVCNHHGNLQGGHYTAYCRNSLDGQWYSYDDST 705

Query: 807 ISPINEDDVKSAAAYVLFYRR 827
           + P+ ED+V +  AY+LFY++
Sbjct: 706 VEPLREDEVNTRGAYILFYQK 726


>gi|321260831|ref|XP_003195135.1| ubiquitin carboxyl-terminal hydrolase 12 [Cryptococcus gattii
           WM276]
 gi|317461608|gb|ADV23348.1| Ubiquitin carboxyl-terminal hydrolase 12, putative [Cryptococcus
           gattii WM276]
          Length = 1416

 Score =  171 bits (433), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 135/483 (27%), Positives = 210/483 (43%), Gaps = 102/483 (21%)

Query: 67  EGRDYILLPQEVWNQLHSWYG--GGPTLARKVISSGLSQTELAVEVYPLRLQLLVM---- 120
           E  DY+ +P+  W ++  W+G   GP+L R  +          +E+ P  L+L ++    
Sbjct: 211 ENEDYVFVPEAGWQKVLEWFGPYDGPSLPRYCVPPD------NIEIIPGNLRLFIVFPAD 264

Query: 121 -------PRGECSTIRISKKET-IGELHRRACSIFYLNLEQICIWDYYGHR----KHALM 168
                  P     ++ ++   T I      A S+    ++   +   +  R    + +  
Sbjct: 265 TIATTNQPDESIQSVLLAPSTTPIKTFESFAVSVCNQEIDPSKLAGQWATRLWKIEKSGE 324

Query: 169 NDMDRTLDDANIQMDQDILVEV-LDNVNGTNCKSSIQDNGFAEKKASSVLVE----PSKS 223
           ND +  L   ++++    L+    + ++ +N + ++ +      K+  V +E    P  S
Sbjct: 325 ND-ESLLKSGSLEITPKALISTKCELIDTSNAEENLAEAILGSSKSQIVAIEFGKIPEGS 383

Query: 224 SLSIAGGWSASKGTSR------NHSSEISTSPNLASARDSDNTLGSS---GVTTRGASV- 273
           S  +   W+    + +      N  + + + P   S      T  +S    + TR  +  
Sbjct: 384 STPV---WNVEVNSDKQAIEKSNKPAPLFSKPAFFSGSGKAATESASTTDAIQTRSQTKE 440

Query: 274 ----GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV------- 321
               GL GL NLGNTCFMNSA+QCL +T E ++YF    Y  E+N  NPLGM        
Sbjct: 441 RKGKGLVGLQNLGNTCFMNSAVQCLSNTKELSQYFLSGVYTDELNRDNPLGMQGQIAEAF 500

Query: 322 -------------------------------------------ELLAFLLDGLHEDLNRV 338
                                                      E +AFLLDGLHEDLNR+
Sbjct: 501 GQVVENLWAPSSSMHSSYSPRQLKWTTSRFAPQFAGYGQHDTQEFIAFLLDGLHEDLNRI 560

Query: 339 KHKPYIKSKD-ADGRPDEEVAD---EYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVS 394
             KPYI+  D   G  D+E+A+   E W  +  RNDS+IVD+ QGQ KSTLVCP C+K S
Sbjct: 561 LKKPYIEKPDWKPGGGDKELAELGKECWDGYKKRNDSVIVDLFQGQLKSTLVCPECHKES 620

Query: 395 VTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSL 454
           +TFDPFMYL++PL     R   VT    D    P    + +P++     +   LG++   
Sbjct: 621 ITFDPFMYLTVPLPIAQNRQFKVTFVPRDTEKPPVNVKLLIPQNASFAQVKDKLGSLFDC 680

Query: 455 KQS 457
           K S
Sbjct: 681 KGS 683



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/176 (39%), Positives = 106/176 (60%), Gaps = 19/176 (10%)

Query: 671  VTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLK 730
            + KK   + + +  CL+ F +EE L  +D+WYCP CK+ + A+KKL++++ P++LVI +K
Sbjct: 1055 LAKKREGKQIGIEDCLDEFSKEETLGQDDLWYCPVCKKHQAATKKLEIYKAPDILVICIK 1114

Query: 731  RFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRR-------------------QLYE 771
            RF  SR M  KL+  V+FPI   +L   +  +  ++                     LY+
Sbjct: 1115 RFGSSRRMGDKLDNLVHFPIDGLDLEDRIGERQVAKTLKLSGEDVEAYGIEDDGEPLLYD 1174

Query: 772  LYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            LYA+ NH+GGMG GHYTA  +   +N+WYN+DDS +S  +   V+S AAY+LFYRR
Sbjct: 1175 LYAVDNHFGGMGGGHYTAFCRNQVDNQWYNYDDSRVSKADVSSVQSRAAYLLFYRR 1230


>gi|324501191|gb|ADY40532.1| Ubiquitin carboxyl-terminal hydrolase 19 [Ascaris suum]
          Length = 1051

 Score =  171 bits (433), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 97/270 (35%), Positives = 138/270 (51%), Gaps = 51/270 (18%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDY-RREINWQNPLGMV----------- 321
           G TGL N+GNTCFMN+ +Q LV+  E   +F  DY +++IN  NPLG             
Sbjct: 336 GFTGLRNIGNTCFMNATLQMLVNCKELQIFFTGDYYKKDINATNPLGFGGRLAEVFAEFM 395

Query: 322 ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E L+FLLDGLHEDLNRV+ KPY  
Sbjct: 396 KQMWSGMNRAFEPTKVKELVAEKAPQFANFAQHDAHEFLSFLLDGLHEDLNRVRSKPYTT 455

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + +A+GRPD EV++E WANH+ RNDS+ VD+  GQ KS L CP C++VS+TFDPF+YL++
Sbjct: 456 TVEANGRPDIEVSNEAWANHLLRNDSVFVDLFHGQLKSRLQCPRCDQVSITFDPFVYLAV 515

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
           P      R+  V  +  D    P  + +     G   +++  +  +  +  ++ L++ E+
Sbjct: 516 PF-PKEKRSSVVYFWPLDPCLKPIKFAIRYSADGTVSEMLDAVSQLVHVP-TKSLRLIEV 573

Query: 466 QNHSIQRFLDDPLISLSTIKDDDHLAAYRV 495
            NH I R    P  S S I   D L  ++V
Sbjct: 574 CNHRIARVF-QPNFSTSQISSTDPLYVFQV 602



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/159 (38%), Positives = 91/159 (57%), Gaps = 12/159 (7%)

Query: 681  SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM-- 738
            SLY  L  F   E L PE+ WYC +CKE  +A+K+L L+RLP +L+I LKRF Y+ S+  
Sbjct: 874  SLYDMLTMFSETERLKPEESWYCNKCKEHVEATKRLQLYRLPPILIIQLKRFVYTTSIMS 933

Query: 739  ---KHKLETFVNFPIHDFNLTKYVANKN-SSRRQLYELYALTNHYGGMGSGHYTAHIKL- 793
               + K +  V +PI D +L+ +++    + +   Y+L  +  H G    GHY +  +L 
Sbjct: 934  MHRRSKDDRPVRYPISDLDLSDFLSETAPNGQTTKYDLTGVVCHSGSSYFGHYISMGRLE 993

Query: 794  -LD----ENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             LD    E  W NFDDS +S I    V++  AY+LFY++
Sbjct: 994  SLDGKTTEIDWRNFDDSMVSRITPSRVQNDDAYLLFYKQ 1032


>gi|392565614|gb|EIW58791.1| cysteine proteinase [Trametes versicolor FP-101664 SS1]
          Length = 1313

 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 103/276 (37%), Positives = 138/276 (50%), Gaps = 55/276 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM------------ 320
           G  GL N+GNTCFMNSAIQCL H  E   YF    Y+ E+N  NPLGM            
Sbjct: 401 GTLGLGNMGNTCFMNSAIQCLAHNTELVDYFLTGVYQEELNPDNPLGMHGAVAQAFGALM 460

Query: 321 -------------------------------------VELLAFLLDGLHEDLNRVKHKPY 343
                                                 EL+AFLLDGLHEDLNRV  KPY
Sbjct: 461 SRIWDPESTMSSYTPREFKQTLQRFAPQFSGYQQHDSQELVAFLLDGLHEDLNRVLKKPY 520

Query: 344 IKSKDADGRPDEEV---ADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPF 400
           ++  D +G  D+E+   A+  W  ++ RNDS++VD+ QGQY+STLVCP C+KVS+TFDPF
Sbjct: 521 VEKPDWEGGGDKELVELANTSWEGYMKRNDSVVVDLFQGQYQSTLVCPECSKVSITFDPF 580

Query: 401 MYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEEL 460
           MYL+LPL        TV     D         V + +H   +D+ Q+LG        + L
Sbjct: 581 MYLTLPLPVQKKWHHTVLYIPWDLEKPHVRVPVELNRHSSFKDVRQLLGRWMG-ADPDNL 639

Query: 461 KVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVP 496
              E+ +H   + LDD ++    + D+D +  + +P
Sbjct: 640 LTLEVFSHQFYKNLDDTVV-CEDMADNDVIVCFELP 674



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/201 (36%), Positives = 115/201 (57%), Gaps = 22/201 (10%)

Query: 646  WSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQ 705
            W   L   ++  F+   L   +    T+K +   ++L  CL+ F +EE L  +D+WYCP 
Sbjct: 900  WEYALWNHWD-EFVHPELAASRKAASTQKQKG--ITLQDCLDEFTKEEKLGADDLWYCPS 956

Query: 706  CKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANK--N 763
            CK+ +QA+K+ DLW+LP+VLV+HLKRFS SR ++ K++TFV+FPI   +LT+ V  +   
Sbjct: 957  CKKHQQATKRFDLWKLPDVLVVHLKRFSNSRMLRDKIDTFVDFPIEGLDLTEMVGERLVG 1016

Query: 764  SSRRQ-----------------LYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSH 806
            S  R+                  Y+L+ +  H GG+G GHY A+       +WY+FDDS+
Sbjct: 1017 SRLREQGADVEALGLDDLDEPLQYDLFGVDEHLGGLGGGHYRAYALNHLTGKWYHFDDSY 1076

Query: 807  ISPINEDDVKSAAAYVLFYRR 827
            ++    +   +  AY+LFYRR
Sbjct: 1077 VTESRPEAAVNGNAYLLFYRR 1097


>gi|157817029|ref|NP_001101018.1| ubiquitin carboxyl-terminal hydrolase 31 [Rattus norvegicus]
 gi|149068029|gb|EDM17581.1| ubiquitin specific protease 31 (predicted) [Rattus norvegicus]
          Length = 1089

 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 132/524 (25%), Positives = 220/524 (41%), Gaps = 103/524 (19%)

Query: 371 SIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPST 430
           + + ++ Q QY+S+L CP C K S TFDPF+ +SLP+    TR + VTV      +    
Sbjct: 13  TFVQELFQAQYRSSLTCPHCQKQSNTFDPFLCISLPIPLPHTRPLYVTVVYQGKCSHCMR 72

Query: 431 YTVTVPKHG---RCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDD 487
             V VP  G   R R+ + +   I     ++++ + E+      R   D    L T+ + 
Sbjct: 73  IGVAVPLSGTVARLREAVSMETKI----PTDQIVLTEMYYDGFHRSFSD-TDDLETVHES 127

Query: 488 DHLAAYRVPKLVKKAVFLQLI-----------------HRLQEQEPGAAQ---------- 520
           D + A+  P++ +    L                    HRL    P AA+          
Sbjct: 128 DCIFAFETPEIFRPEGILSQRGIHLNNNLNHLKFGLDHHRLSSSTPTAAKQGRVDLPSRV 187

Query: 521 --------------TTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMH 566
                         T  Q K +G P V  +  +  ++   +Q  +   +  FL+    + 
Sbjct: 188 ASDKIVLLVCNRACTGQQGKRFGLPFV--LHLEKTVAWDLLQKEILEKMKYFLRPTVSVQ 245

Query: 567 ADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVE 626
              F                             S + V++  +   L  E       +VE
Sbjct: 246 VCPF-----------------------------SLRVVSVVGITYLLPQEEQPLCHPTVE 276

Query: 627 GDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEP--LSLYT 684
                  P  +  + + V+W ++  +    +  +  +   ++  + K+   +P   +L  
Sbjct: 277 RALKSCGPGGTAHVKLVVEWDKETKDFLFVNTEDEYIPDAESVRLQKEQHHQPQTCTLSQ 336

Query: 685 CLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLET 744
           C + + +EE L P+D W CP CK+ +Q S  L LW LP+VL+IHLKRF      + KL+ 
Sbjct: 337 CFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRFRQEGDRRMKLQN 396

Query: 745 FVNFPIHDFNLTKYVANKNSS-----------RRQ----------LYELYALTNHYGGMG 783
            V FP+   ++T +V  ++ S           RR           +Y+LYA+ NH+G M 
Sbjct: 397 MVKFPLTGLDMTPHVVKRSQSSWSLPSHWSPWRRPYGLGRDPEDYIYDLYAVCNHHGTMQ 456

Query: 784 SGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            GHYTA+ K   +  WY FDDS +  ++ED+V +  AY+LFY+R
Sbjct: 457 GGHYTAYCKNSVDGLWYCFDDSDVQQLSEDEVCTQTAYILFYQR 500


>gi|308460004|ref|XP_003092311.1| CRE-CYK-3 protein [Caenorhabditis remanei]
 gi|308253579|gb|EFO97531.1| CRE-CYK-3 protein [Caenorhabditis remanei]
          Length = 1168

 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 213/898 (23%), Positives = 342/898 (38%), Gaps = 175/898 (19%)

Query: 34   ASKRPSGIDNSDL-----------VNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQL 82
            A K P  IDNS +           V   +AE     P++V +     DYI +P  +W   
Sbjct: 338  ADKSPMPIDNSGIKGTREDSWTSRVACISAESARLKPDLVPS-----DYIRVPVPLWRAW 392

Query: 83   HSWYGGGPTL----ARKVISSGLSQ-TELAVEVYPLRLQLLVMPR-----GECSTIR--- 129
              W+G   T+     RK +     +  + A+E+YPL + LL   R     G  +T R   
Sbjct: 393  LRWHGCALTVDSQFTRKYLDGEFFEDNKPALELYPLEILLLGHDRKKSHDGSETTPRSLT 452

Query: 130  ------ISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMD 183
                  +S+  T+ EL     +   L      +W      +       +  LDD N  + 
Sbjct: 453  PWACAQVSRSMTVDELLSLCKTELRLGDGDARLWQVVKENEEG-----NVLLDDGNQNLH 507

Query: 184  QDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSS 243
            Q  L   L      N     +     E +     V P +   S+ G    +  T  + ++
Sbjct: 508  Q--LYTSLGKTKKVN-----KMKLLLEVRERGTGVWPEELRASLTGKQITAASTLSSSNA 560

Query: 244  EISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVH------- 296
            ++S  P                        G  GL+N GN C+ N+ IQCL         
Sbjct: 561  QLSGRP------------------------GAVGLVNYGNFCYRNAGIQCLARVSPLTQY 596

Query: 297  -----------------------TPEFARYFRE------------DYRREINWQNPL--- 318
                                   T E+A+  RE            D+   I   + +   
Sbjct: 597  FLEDEHLEDIKKANTRRKDAIETTIEYAKLLREMWAAKKKNIAPNDFNDAIRMNSDMFEC 656

Query: 319  ----GMVELLAFLLDGLHEDL---NRVKHKPYIK------SKDADGRPDEEVADEYWANH 365
                   E +AFLLD LH  +   N+  H P         ++D     DEE A+  W  +
Sbjct: 657  SEQHDCQEFVAFLLDQLHTSMYEANKTLHPPPPDEDKKEVTRDLKDETDEEKAERSWTEY 716

Query: 366  IARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGS 425
              +NDS++ ++  GQ +S L+C  C   S  F+PF  LSLP+         V V   DG 
Sbjct: 717  EKQNDSLVTELFTGQLRSRLICRTCQSSSSVFEPFTSLSLPIGFEDVDLYQVIVVHRDGR 776

Query: 426  ALPSTYTVTV---PKHGRCRDLIQVLGNI------CSLKQSEELKVAEIQNHSIQRFLDD 476
             +P  Y   +    K G  R+++     I           S+   ++   NH      D+
Sbjct: 777  -IPRRYGFRLSRDSKIGHLREVVAASSGISMSHITIQCMSSKGTLMSRSPNHKSSNLRDE 835

Query: 477  PLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHR-LQ-EQEPGAAQTTSQW--KAYGTPL 532
                LS+      L A  +P+   +  +   +HR LQ   EP    +T+ +    +G PL
Sbjct: 836  --YPLSSFPSGARLYALELPESTGENEWRVAMHRKLQYNHEPHILGSTAGFIVSRFGLPL 893

Query: 533  VSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSN 592
            +  +  D+ ++  K+   V   +  F++       +SF   +     DP  +  S     
Sbjct: 894  I--VGLDEHVTGKKLYEDVMYQMHRFMEHS----VNSFSSRAH----DPCEDDASGFPFT 943

Query: 593  IAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDK-TIRIPSSSTSIVVYVDWSQKLL 651
            +   D +       P L          C    +  D+  + IP++     + VDW    L
Sbjct: 944  LCLVDQNYEWCGQCPAL--------RFCRGCPIRPDEGKVFIPANCP---IAVDWLPIAL 992

Query: 652  EKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQ 711
                 H  E   E   +   T      P SL  C+E F   E L  +    C +C+++  
Sbjct: 993  YLRYNHSQEQACEDDPSVAETWSRHFAPSSLEHCIEKFSCPETL--DAAIQCDRCEKKTM 1050

Query: 712  ASKKLDLWRLPEVLVIHLKRFSYSRSMKH--KLETFVNFPIHDFNLTKYVANKNSSRRQL 769
              K + +W+LP+ L+IHLKRF + R      K +  VNFP+  F+   +V   + +    
Sbjct: 1051 RDKVMTIWKLPKYLIIHLKRFEFLREQGRMGKCKRTVNFPLKHFDPAPFVDKPDGN---T 1107

Query: 770  YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            YE  AL NHYG +  GH+ A+ K  +E++W   +D  +  ++E++V    AY+LFY R
Sbjct: 1108 YECIALANHYGQLSCGHFIAYAK-SNEDKWLLLNDCSVREVSEEEVDKQGAYLLFYER 1164


>gi|327533544|pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its
           Ubiquitin- Like Domain
 gi|327533545|pdb|2Y6E|B Chain B, Ubiquitin Specific Protease 4 Is Inhibited By Its
           Ubiquitin- Like Domain
 gi|327533546|pdb|2Y6E|C Chain C, Ubiquitin Specific Protease 4 Is Inhibited By Its
           Ubiquitin- Like Domain
 gi|327533547|pdb|2Y6E|D Chain D, Ubiquitin Specific Protease 4 Is Inhibited By Its
           Ubiquitin- Like Domain
 gi|327533548|pdb|2Y6E|E Chain E, Ubiquitin Specific Protease 4 Is Inhibited By Its
           Ubiquitin- Like Domain
 gi|327533549|pdb|2Y6E|F Chain F, Ubiquitin Specific Protease 4 Is Inhibited By Its
           Ubiquitin- Like Domain
          Length = 367

 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 95/190 (50%), Positives = 106/190 (55%), Gaps = 48/190 (25%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV----------- 321
           GL GL NLGNT FMNSA+QCL +T     YF +++Y  EIN  NPLGM            
Sbjct: 7   GLCGLGNLGNTXFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELI 66

Query: 322 ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                               ELLAFLLDGLHEDLNRVK KPY++
Sbjct: 67  KQMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLE 126

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
            KDA+GRPD  VA E W NH  RNDS+IVD   G +KSTLVCP C KVSVTFDPF YL+L
Sbjct: 127 LKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTL 186

Query: 406 PLQATTTRTM 415
           PL     R M
Sbjct: 187 PLPLKKDRVM 196



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 79/161 (49%), Positives = 111/161 (68%), Gaps = 3/161 (1%)

Query: 669 GPVTK--KARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLV 726
           GP+ +  K +   ++L  C+E F   E L   D WYCP CK+ +QA+KK DLW LP++LV
Sbjct: 198 GPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILV 257

Query: 727 IHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGH 786
           +HLKRFSY+R  + KL+T V FPI   N++++V N  S+R  +Y+L A++NHYG MG GH
Sbjct: 258 VHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNL-SARPYVYDLIAVSNHYGAMGVGH 316

Query: 787 YTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           YTA+ K     +WY FDDS++S  +ED + + AAYVLFY+R
Sbjct: 317 YTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQR 357


>gi|432871632|ref|XP_004072009.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 43-like [Oryzias
           latipes]
          Length = 1187

 Score =  170 bits (430), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 164/638 (25%), Positives = 289/638 (45%), Gaps = 110/638 (17%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFR-EDYRREINWQNPLGMV----------- 321
           G+ GL N GNTCFMN+ +QCL +T   A Y   E Y+ +++     G+V           
Sbjct: 116 GVLGLKNHGNTCFMNAVVQCLSNTDLLAEYLGLERYKMDLSQSRINGVVRSGEPRRVSGE 175

Query: 322 --ELLAFLLDGL----HEDLNRVKHKPYIKSKDADGRP--------------DEEVADEY 361
             E LA L+  L    +     V  K  +    +  R               D    D  
Sbjct: 176 VTEQLASLVRALWTLEYTPQQSVDFKTVVSKYGSQFRGNSQHDALEFLLWLLDRVHEDVI 235

Query: 362 WANHIARND-----------SIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQAT 410
            A H   N            S + +  Q QYKS+L CP C K S TFDPF+ +SLP+   
Sbjct: 236 LAPHNNNNKVKAPEKPGSSHSFVQEHFQAQYKSSLTCPHCLKQSNTFDPFLCISLPIPLR 295

Query: 411 TTRTMTVT-VFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQ--SEELKVA---- 463
            TR + VT VF+S G            ++ R    + + G++  L++  +EE K++    
Sbjct: 296 QTRPLCVTLVFSSKGQ-----------RYLRVGLAVPLFGSVACLRRMVAEEGKLSLDQV 344

Query: 464 ---EIQNHSIQR-FLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAA 519
              E+ +   QR F D+    L++I ++D + A++ P L  +    ++     ++ P + 
Sbjct: 345 ILTEVYSTGFQRSFFDED--DLTSIAENDVIYAFQAPPLYIRGGSARISEFKGQRLPPSG 402

Query: 520 QTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVT-- 577
             +S++   G  +   +   +   +G+ Q+T  R   PFL +E    +      S+++  
Sbjct: 403 TLSSEFLNQGVAVKILLLVCNAAGAGQ-QTT--RFGPPFLMREDQSISWEQLQQSILSKL 459

Query: 578 ---TVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIP 634
               ++ +   ++    NI     ++  +   P        ++   +  +VE    +   
Sbjct: 460 YYLMINGAQAQNARVLFNIRVVGGAAFYSYLSPQ-------DARPLYHPAVERALKLCGS 512

Query: 635 SSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTC-----LEAF 689
                + + ++W  ++ +    +  E   EV K+    +  +   +  ++C      + +
Sbjct: 513 GGPPHVKLIIEWEHRIKDCLFGNIHE---EVVKDAESVRNLQQHHVQQHSCTLDECFQLY 569

Query: 690 LREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFP 749
            +EE L P+D W CP CK+ +Q   K+ LW LP++L++HLKRF      ++KL TFV+FP
Sbjct: 570 TKEEQLAPDDAWKCPHCKQLQQGMVKMSLWTLPDILILHLKRFRQVGERRNKLTTFVHFP 629

Query: 750 IHDFNLTKYVANKNS-------------SRRQ-------LYELYALTNHYGGMGSGHYTA 789
           +   ++T ++ ++N+             SRR        LY+LYA+ NH+GGM  GHYTA
Sbjct: 630 LAGLDMTPHMVHRNNGPQEPLLQPGWNQSRRPDLTPPDFLYDLYAVCNHHGGMHGGHYTA 689

Query: 790 HIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             +   + +WY++DDS   P+ E +V +  AY+LFY++
Sbjct: 690 FCRNSVDGQWYSYDDSSAEPVPEAEVCTRGAYILFYQK 727


>gi|119610761|gb|EAW90355.1| hCG1991532, isoform CRA_b [Homo sapiens]
          Length = 1406

 Score =  170 bits (430), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 102/253 (40%), Positives = 134/253 (52%), Gaps = 54/253 (21%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF---REDYRREINWQNPLGMV--------- 321
           G TGL NLGNTCFMNS+IQC+ +T    +YF   R  Y  E+N  NP+GM          
Sbjct: 530 GATGLSNLGNTCFMNSSIQCVSNTQPLTQYFISGRHLY--ELNRTNPIGMKGHMAKCYGD 587

Query: 322 --------------------------------------ELLAFLLDGLHEDLNRVKHKPY 343
                                                 ELLAFLLDGLHEDLNRV  KPY
Sbjct: 588 LVQELWSGTQKSVAPLKLRRTIAKYAPKFDGFQQQDSQELLAFLLDGLHEDLNRVHEKPY 647

Query: 344 IKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYL 403
           ++ KD+DGRPD EVA E W NH+ RN SIIVD+  GQ +S + C  C  +SV FDPF +L
Sbjct: 648 VELKDSDGRPDWEVAAEAWDNHLRRNRSIIVDLFHGQLRSQVKCKTCGHISVRFDPFNFL 707

Query: 404 SLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVA 463
           SLPL   +   + +TV   DG+  P  Y + +    +   L + L ++C L  SE++ +A
Sbjct: 708 SLPLPMDSYMDLEITVIKLDGTT-PVRYGLRLNMDEKYTGLKKQLRDLCGLN-SEQILLA 765

Query: 464 EIQNHSIQRFLDD 476
           E+ + +I+ F  D
Sbjct: 766 EVHDSNIKNFPQD 778



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 72/125 (57%), Gaps = 2/125 (1%)

Query: 642  VYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
            + VDW    L  +Y T   E +++  ++   +++A+ EP++L +CL AF  EE L   +M
Sbjct: 993  IAVDWHPTALHLRYQTS-QERVVDKHESVEQSRRAQAEPINLDSCLRAFTSEEELGESEM 1051

Query: 701  WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
            +YC +CK    A+KKLDLWRLP  L+IHLKRF +      K +  V F    F+ + ++ 
Sbjct: 1052 YYCSKCKTHCLATKKLDLWRLPPFLIIHLKRFQFVNDQWIKSQKIVRFLRESFDPSAFLV 1111

Query: 761  NKNSS 765
             ++ +
Sbjct: 1112 PRDPA 1116



 Score = 48.1 bits (113), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 1/61 (1%)

Query: 767  RQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYR 826
            + +Y LYA++ H G +  GHY  + K  +  +WY ++DS    ++ D++ + +AY+LFY 
Sbjct: 1309 KPIYNLYAISCHSGILSGGHYITYAKNPN-CKWYCYNDSSCEELHPDEIDTDSAYILFYE 1367

Query: 827  R 827
            +
Sbjct: 1368 Q 1368


>gi|109638751|ref|NP_004496.2| ubiquitin carboxyl-terminal hydrolase 6 [Homo sapiens]
 gi|50403738|sp|P35125.2|UBP6_HUMAN RecName: Full=Ubiquitin carboxyl-terminal hydrolase 6; AltName:
           Full=Deubiquitinating enzyme 6; AltName:
           Full=Proto-oncogene TRE-2; AltName: Full=Ubiquitin
           thioesterase 6; AltName:
           Full=Ubiquitin-specific-processing protease 6
 gi|24474450|gb|AAN38838.1| ubiquitin-specific protease USP6 [Homo sapiens]
          Length = 1406

 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 102/253 (40%), Positives = 134/253 (52%), Gaps = 54/253 (21%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF---REDYRREINWQNPLGMV--------- 321
           G TGL NLGNTCFMNS+IQC+ +T    +YF   R  Y  E+N  NP+GM          
Sbjct: 530 GATGLSNLGNTCFMNSSIQCVSNTQPLTQYFISGRHLY--ELNRTNPIGMKGHMAKCYGD 587

Query: 322 --------------------------------------ELLAFLLDGLHEDLNRVKHKPY 343
                                                 ELLAFLLDGLHEDLNRV  KPY
Sbjct: 588 LVQELWSGTQKSVAPLKLRRTIAKYAPKFDGFQQQDSQELLAFLLDGLHEDLNRVHEKPY 647

Query: 344 IKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYL 403
           ++ KD+DGRPD EVA E W NH+ RN SIIVD+  GQ +S + C  C  +SV FDPF +L
Sbjct: 648 VELKDSDGRPDWEVAAEAWDNHLRRNRSIIVDLFHGQLRSQVKCKTCGHISVRFDPFNFL 707

Query: 404 SLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVA 463
           SLPL   +   + +TV   DG+  P  Y + +    +   L + L ++C L  SE++ +A
Sbjct: 708 SLPLPMDSYMDLEITVIKLDGTT-PVRYGLRLNMDEKYTGLKKQLRDLCGLN-SEQILLA 765

Query: 464 EIQNHSIQRFLDD 476
           E+ + +I+ F  D
Sbjct: 766 EVHDSNIKNFPQD 778



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 72/125 (57%), Gaps = 2/125 (1%)

Query: 642  VYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
            + VDW    L  +Y T   E +++  ++   +++A+ EP++L +CL AF  EE L   +M
Sbjct: 993  IAVDWHPTALHLRYQTS-QERVVDKHESVEQSRRAQAEPINLDSCLRAFTSEEELGESEM 1051

Query: 701  WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
            +YC +CK    A+KKLDLWRLP  L+IHLKRF +      K +  V F    F+ + ++ 
Sbjct: 1052 YYCSKCKTHCLATKKLDLWRLPPFLIIHLKRFQFVNDQWIKSQKIVRFLRESFDPSAFLV 1111

Query: 761  NKNSS 765
             ++ +
Sbjct: 1112 PRDPA 1116



 Score = 48.1 bits (113), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 1/61 (1%)

Query: 767  RQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYR 826
            + +Y LYA++ H G +  GHY  + K  +  +WY ++DS    ++ D++ + +AY+LFY 
Sbjct: 1309 KPIYNLYAISCHSGILSGGHYITYAKNPN-CKWYCYNDSSCEELHPDEIDTDSAYILFYE 1367

Query: 827  R 827
            +
Sbjct: 1368 Q 1368


>gi|37334|emb|CAA45111.1| oncogene [Homo sapiens]
          Length = 1089

 Score =  169 bits (428), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 102/253 (40%), Positives = 134/253 (52%), Gaps = 54/253 (21%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF---REDYRREINWQNPLGMV--------- 321
           G TGL NLGNTCFMNS+IQC+ +T    +YF   R  Y  E+N  NP+GM          
Sbjct: 213 GATGLSNLGNTCFMNSSIQCVSNTQPLTQYFISGRHLY--ELNRTNPIGMKGHMAKCYGD 270

Query: 322 --------------------------------------ELLAFLLDGLHEDLNRVKHKPY 343
                                                 ELLAFLLDGLHEDLNRV  KPY
Sbjct: 271 LVQELWSGTQKSVAPLKLRRTIAKYAPKFDGFQQQDSQELLAFLLDGLHEDLNRVHEKPY 330

Query: 344 IKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYL 403
           ++ KD+DGRPD EVA E W NH+ RN SIIVD+  GQ +S + C  C  +SV FDPF +L
Sbjct: 331 VELKDSDGRPDWEVAAEAWDNHLRRNRSIIVDLFHGQLRSQVKCKTCGHISVRFDPFNFL 390

Query: 404 SLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVA 463
           SLPL   +   + +TV   DG+  P  Y + +    +   L + L ++C L  SE++ +A
Sbjct: 391 SLPLPMDSYMDLEITVIKLDGTT-PVRYGLRLNMDEKYTGLKKQLRDLCGLN-SEQILLA 448

Query: 464 EIQNHSIQRFLDD 476
           E+ + +I+ F  D
Sbjct: 449 EVHDSNIKNFPQD 461



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 72/125 (57%), Gaps = 2/125 (1%)

Query: 642 VYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
           + VDW    L  +Y T   E +++  ++   +++A+ EP++L +CL AF  EE L   +M
Sbjct: 676 IAVDWHPTALHLRYQTS-QERVVDKHESVEQSRRAQAEPINLDSCLRAFTSEEELGESEM 734

Query: 701 WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
           +YC +CK    A+KKLDLWRLP  L+IHLKRF +      K +  V F    F+ + ++ 
Sbjct: 735 YYCSKCKTHCLATKKLDLWRLPPFLIIHLKRFQFVNDQWIKSQKIVRFLRESFDPSAFLV 794

Query: 761 NKNSS 765
            ++ +
Sbjct: 795 PRDPA 799



 Score = 48.5 bits (114), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 1/61 (1%)

Query: 767  RQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYR 826
            + +Y LYA++ H G +  GHY  + K  +  +WY ++DS    ++ D++ + +AY+LFY 
Sbjct: 992  KPIYNLYAISCHSGILSGGHYITYAKNPN-CKWYCYNDSSCEELHPDEIDTDSAYILFYE 1050

Query: 827  R 827
            +
Sbjct: 1051 Q 1051


>gi|119610762|gb|EAW90356.1| hCG1991532, isoform CRA_c [Homo sapiens]
          Length = 1089

 Score =  169 bits (428), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 102/253 (40%), Positives = 134/253 (52%), Gaps = 54/253 (21%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF---REDYRREINWQNPLGMV--------- 321
           G TGL NLGNTCFMNS+IQC+ +T    +YF   R  Y  E+N  NP+GM          
Sbjct: 213 GATGLSNLGNTCFMNSSIQCVSNTQPLTQYFISGRHLY--ELNRTNPIGMKGHMAKCYGD 270

Query: 322 --------------------------------------ELLAFLLDGLHEDLNRVKHKPY 343
                                                 ELLAFLLDGLHEDLNRV  KPY
Sbjct: 271 LVQELWSGTQKSVAPLKLRRTIAKYAPKFDGFQQQDSQELLAFLLDGLHEDLNRVHEKPY 330

Query: 344 IKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYL 403
           ++ KD+DGRPD EVA E W NH+ RN SIIVD+  GQ +S + C  C  +SV FDPF +L
Sbjct: 331 VELKDSDGRPDWEVAAEAWDNHLRRNRSIIVDLFHGQLRSQVKCKTCGHISVRFDPFNFL 390

Query: 404 SLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVA 463
           SLPL   +   + +TV   DG+  P  Y + +    +   L + L ++C L  SE++ +A
Sbjct: 391 SLPLPMDSYMDLEITVIKLDGTT-PVRYGLRLNMDEKYTGLKKQLRDLCGLN-SEQILLA 448

Query: 464 EIQNHSIQRFLDD 476
           E+ + +I+ F  D
Sbjct: 449 EVHDSNIKNFPQD 461



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 72/125 (57%), Gaps = 2/125 (1%)

Query: 642 VYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
           + VDW    L  +Y T   E +++  ++   +++A+ EP++L +CL AF  EE L   +M
Sbjct: 676 IAVDWHPTALHLRYQTS-QERVVDKHESVEQSRRAQAEPINLDSCLRAFTSEEELGESEM 734

Query: 701 WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
           +YC +CK    A+KKLDLWRLP  L+IHLKRF +      K +  V F    F+ + ++ 
Sbjct: 735 YYCSKCKTHCLATKKLDLWRLPPFLIIHLKRFQFVNDQWIKSQKIVRFLRESFDPSAFLV 794

Query: 761 NKNSS 765
            ++ +
Sbjct: 795 PRDPA 799



 Score = 48.5 bits (114), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 1/61 (1%)

Query: 767  RQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYR 826
            + +Y LYA++ H G +  GHY  + K  +  +WY ++DS    ++ D++ + +AY+LFY 
Sbjct: 992  KPIYNLYAISCHSGILSGGHYITYAKNPN-CKWYCYNDSSCEELHPDEIDTDSAYILFYE 1050

Query: 827  R 827
            +
Sbjct: 1051 Q 1051


>gi|325182386|emb|CCA16839.1| ubiquitinspecific protease putative [Albugo laibachii Nc14]
          Length = 1031

 Score =  169 bits (427), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 103/281 (36%), Positives = 143/281 (50%), Gaps = 58/281 (20%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGM------------ 320
           G  GL NLGNTCF+NSA+QCL H      YF    +++++N  NPLG             
Sbjct: 383 GKVGLRNLGNTCFLNSALQCLSHMHVLTNYFLSTRFQQDLNRDNPLGTGGELALVYNDLI 442

Query: 321 -----------------------------------VELLAFLLDGLHEDLNRVKHKPYIK 345
                                               ELLA++LDGLHEDLNR+K KPY +
Sbjct: 443 RELWFGSTSQLSPIALKRAIARFAPQFSGYQQQDAQELLAYMLDGLHEDLNRIKQKPYTE 502

Query: 346 SKDADGR-PDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLS 404
            +++DG+  D  VADE W  H+ RNDSI VD  QGQ+KST+VCPVC+KVS+TFDP+  + 
Sbjct: 503 VQESDGKLEDAIVADEAWRRHLLRNDSIFVDHIQGQFKSTVVCPVCSKVSITFDPYNCIQ 562

Query: 405 LPLQATTTRTMTVTVFTSDG-------SALPSTYTVTVPKHGRCRDLIQVLGNICSLKQS 457
           L L   TTR + V V + D        +   + Y V V K    + L Q +  +C +  S
Sbjct: 563 LELPTQTTRILDVIVVSDDAAQENELHACHFTRYAVQVIKKQCAQALCQEVSEVCGIAAS 622

Query: 458 EELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKL 498
             L +A++   +I R + D    +S+I D D + AY +  +
Sbjct: 623 -RLVLADVYQSTIFRLIRDT-DRISSISDGDRIVAYEMSSI 661



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 62/174 (35%), Positives = 105/174 (60%), Gaps = 14/174 (8%)

Query: 668  NGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVI 727
            +G  +  +  E ++L  C + F++ E L   ++WYC  CK  RQA K++++W++P++L++
Sbjct: 855  HGSKSLGSNNETITLDACFKNFIKPETLDDANLWYCASCKAHRQAHKRIEIWKVPDILIL 914

Query: 728  HLKRFSY-SRSMKHKLETFVNFPIHDFNLTKYV-------ANKNSSRRQLYELYALTNHY 779
             LKRF Y + +++ KL   V FP+ + N+  Y        A  + +R   Y+L+A++NH+
Sbjct: 915  SLKRFEYRNETLRDKLSVDVEFPLENLNMRPYCLQALDPNAANHFNRSLDYDLFAVSNHF 974

Query: 780  GGMGSGHYTAHIKLLDENR------WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            GGM  GHYTA  K   ++R      WY FDD  +  ++ D +KS +AY+LFY+R
Sbjct: 975  GGMSFGHYTACAKNSWQSRGEDPPCWYYFDDGVVEMMSNDRIKSNSAYILFYQR 1028



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 62/135 (45%), Gaps = 24/135 (17%)

Query: 1   WWQHWIDYVNQD-----------QPNNTGDGS---SLLEHFNSAGSSASKRPSGIDNSDL 46
           WWQ W   V+             +P+   D S   + +E        A   PS IDN  L
Sbjct: 80  WWQKWCRIVDFKPRQLILSSFYMEPSAESDSSYHENRMEDGEMGEMDAHTVPS-IDNVVL 138

Query: 47  V---NDATAE-DPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGL- 101
           +   +DA    D   G  +   L E RD++L PQEVW+    WYGGGPT+AR V+S  + 
Sbjct: 139 LRGMDDANRNLDDLVGAPLRTNLEEYRDFVLAPQEVWDAFCCWYGGGPTIARFVVSKSVR 198

Query: 102 ----SQTELAVEVYP 112
               S T   V++YP
Sbjct: 199 DQDKSTTINRVQIYP 213


>gi|358057420|dbj|GAA96769.1| hypothetical protein E5Q_03440 [Mixia osmundae IAM 14324]
          Length = 2025

 Score =  169 bits (427), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 101/224 (45%), Positives = 119/224 (53%), Gaps = 62/224 (27%)

Query: 250  NLASARDSD--NTLGSSGVTTR---------GASVGLTGLLNLGNTCFMNSAIQCLVHTP 298
             + S+RDS    T    G+T R         G S GLTGL NLGNTCFMNSA+QCL +TP
Sbjct: 1194 GMTSSRDSSPAGTEEKLGITARLLRSHAASTGRSRGLTGLGNLGNTCFMNSALQCLSNTP 1253

Query: 299  EFARYFRED-YRREINWQNPLGM------------------------------------- 320
            E  RYF    Y+ E+N  NPLGM                                     
Sbjct: 1254 ELQRYFTSGAYKSELNPDNPLGMNGEVAEAFGQLMQRIWTGGSNSYTPREFKAMIGRFRP 1313

Query: 321  ----------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEV---ADEYWANHIA 367
                       ELLAFLLDGLHEDLNR+K KPY++  D  G  DEE+   A   W  + +
Sbjct: 1314 VFLGWQQQDSQELLAFLLDGLHEDLNRIKKKPYVEQPDWTGGDDEELMNLAKTSWDQYKS 1373

Query: 368  RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATT 411
            RNDSIIVD+ QGQY S +VCP C KVS+TFDPFMYL+L L + T
Sbjct: 1374 RNDSIIVDLFQGQYTSKVVCPDCAKVSITFDPFMYLTLQLPSKT 1417



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 83/215 (38%), Positives = 123/215 (57%), Gaps = 29/215 (13%)

Query: 642  VYVDWSQKLLEKY----------NTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLR 691
            + VDW  +  + Y           T  L  L  V++            L++  CL+ F R
Sbjct: 1706 LLVDWDDEAYDAYFGDAPTPNLSETAQLNALFTVYQEPESGDADSKTGLTIDKCLKDFTR 1765

Query: 692  EEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIH 751
             E L  ++ WYC +CK+ +QA KK+DLW+ P+VLVIHLKRFS  R  + K+  FV+FPI 
Sbjct: 1766 AEQLTEDNAWYCSRCKKHQQAEKKIDLWKTPDVLVIHLKRFSNVRYSRDKITDFVDFPIE 1825

Query: 752  DFNLTKYVANKNSSRR------------------QLYELYALTNHYGGMGSGHYTAHIKL 793
              +L ++V  + ++ R                   LY+L+A+ NHYGGMG GHYTA+ + 
Sbjct: 1826 GLDLEQHVLGRKTAERLRAEKGADYAIDEALDEPLLYDLFAVDNHYGGMGGGHYTAYAQN 1885

Query: 794  LDENRWYNFDDSHISPIN-EDDVKSAAAYVLFYRR 827
            +++ +WYN+DDSH+SP+   + VK+ AAY+LFYRR
Sbjct: 1886 VEDGKWYNYDDSHVSPVGAANAVKTQAAYLLFYRR 1920


>gi|348681733|gb|EGZ21549.1| hypothetical protein PHYSODRAFT_299232 [Phytophthora sojae]
          Length = 1696

 Score =  168 bits (426), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 181/672 (26%), Positives = 281/672 (41%), Gaps = 165/672 (24%)

Query: 1    WWQHWIDYVNQDQPNNTGDGSSLLEHF--NSA----------------------GSSASK 36
            WW+ W DYVN D  N +  GS  +     N+A                      G+S   
Sbjct: 482  WWRKWCDYVNMDPRNGSPYGSLPVPRIPPNTAVEMAQNIRGNIALRAARFSGDSGASRPP 541

Query: 37   RPSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKV 96
            RP  I N  L+  + +        +   L+   DY ++P  V+  L SWY GGP L R +
Sbjct: 542  RPGPIANWGLLMQSGSR------RLKQKLVLAHDYYMIPSPVYAVLFSWYNGGPDLVRSI 595

Query: 97   IS-SGLSQTELAVEVYPLRLQLL--------VMPRGECSTIRISKKETIGELHRRACSIF 147
            +     S+ EL +E++PL L++         VM  GE   I +S+  T   L    C   
Sbjct: 596  VEVPTKSEPELQLELFPLVLRVARVDPANGSVMRSGE--EILLSELSTPASLLEATCRAL 653

Query: 148  YLN--LEQICIWDYYGHR--KHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSI 203
             L   +++  +W Y+  +  +H +    +  L+   +  D   L+EV D+ +G+   S  
Sbjct: 654  LLQKLIDKARLW-YFNEKTPEHKIRLRDEYPLELRKLTQDSVFLLEVQDD-DGSWPLSQT 711

Query: 204  QDNGFAEKKASSVLVEPSKSSLSI----AGGWSASKGTSRNH----SSEISTSPNLASA- 254
             D       +S+ + +P++ + ++    A G S+ K   ++     +S+I +  NL    
Sbjct: 712  SDT-ITSSPSSNGVRQPTQGNGNVNESDAAGASSRKRQLQHRPSLRTSDICSRGNLGETL 770

Query: 255  --RDS-----------DNTLGSSGVTTRGA-----SVGLTGLLNLGNTCFMNSAIQCLVH 296
              RD            D  L S  V  R +       GL GL NLGNTC+M+SA+QCL H
Sbjct: 771  AHRDPGSDAGSPTIEVDPVLASPVVRKRFSKDAFTGPGLVGLDNLGNTCYMSSALQCLSH 830

Query: 297  TPEFARYFR-EDYRREINWQNPLG--------MVELLAFLLDG----------------- 330
            T     YF+ E Y ++IN +N  G          ELL  L                    
Sbjct: 831  TRLLVEYFKNEAYLKDINLRNRDGTNGKLTAAFGELLRVLWTSDRKRFAPNEFKKVLAKC 890

Query: 331  ----------------------LHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIAR 368
                                  L EDLNRV  KPY +  D+DGRPD  VA+E+W NH  R
Sbjct: 891  NPQFAGSDQHDAQELLACLLSSLSEDLNRVVKKPYTEQPDSDGRPDALVAEEWWQNHQKR 950

Query: 369  NDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVT-VFTSDGSAL 427
              S+IV +  GQYKS L C +C   S  F+PF +L L L  +++R++ +T +F +D   +
Sbjct: 951  EFSVIVALFTGQYKSLLECSICRYESARFEPFTFLQLSLPESSSRSIVLTIIFRTD--RV 1008

Query: 428  PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEE--------------------------LK 461
            P  ++V V      + + + +     LK++E+                          + 
Sbjct: 1009 PLRFSVRVQNGDTVQQMKEQVAAF--LKKTEKENTDPTPPDEEASSADGSTSEGDWMGVV 1066

Query: 462  VAEIQN-HSIQRFLDDPLISLSTIKDDDHLAAYRV--------PKLVKKAVFLQLIHRLQ 512
            +A   N H+++  LDD L  L+ I + D L A+ +        P+LV           L 
Sbjct: 1067 IARTSNAHTVELLLDDKL-PLTQIHEKDQLTAFELDRDEDLLPPRLVSPGA-TNRAEALT 1124

Query: 513  EQEPGAAQTTSQ 524
            EQ P     T++
Sbjct: 1125 EQTPDDVDKTNE 1136



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 80/148 (54%), Gaps = 9/148 (6%)

Query: 631  IRIPSSSTSI------VVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYT 684
            + IPS+ T I       V +DW  + L++       + ++   +    ++   +PL+L  
Sbjct: 1375 VLIPSAQTVIPLAAEETVAIDWDIRTLKEEYDPIQASKMDFDASVQQHQRQDNQPLNLAH 1434

Query: 685  CLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLET 744
            C+E F  +E  +PE   YC  CK  R A+KK+DLWRLP +LVIHLKRF +++  + KL  
Sbjct: 1435 CMEMFTAKE-TIPEA--YCGHCKTLRPATKKMDLWRLPPLLVIHLKRFCFTQVSRRKLHH 1491

Query: 745  FVNFPIHDFNLTKYVANKNSSRRQLYEL 772
             V+FP+       +VA K  +R +L  L
Sbjct: 1492 LVDFPLKGLQFDDFVARKREARGRLSGL 1519



 Score = 66.2 bits (160), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 39/59 (66%)

Query: 769  LYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            LY+LYA+ NH G +G GHY A+I    + +W  F+D     I+E +V S+ AY+LFYRR
Sbjct: 1580 LYDLYAVVNHVGALGGGHYFAYILSDHDGKWKCFNDHQCKDIDEKEVVSSMAYILFYRR 1638


>gi|332848886|ref|XP_001138469.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 32 [Pan
           troglodytes]
          Length = 604

 Score =  168 bits (426), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 105/274 (38%), Positives = 141/274 (51%), Gaps = 58/274 (21%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF---REDYRREINWQNPLGMV--------- 321
           G TGL NLGNTCFMNS+IQC+ +T    +YF   R  Y  E+N  NP+GM          
Sbjct: 158 GATGLSNLGNTCFMNSSIQCVSNTQPLTQYFISGRHLY--ELNRTNPIGMKGHMAKCYGD 215

Query: 322 --------------------------------------ELLAFLLDGLHEDLNRVKHKPY 343
                                                 ELLAFLLDGLHEDLNRV  KPY
Sbjct: 216 LVQELWSGTQKNVAPLKLRWTIAKYAPRFNGFQQQDSQELLAFLLDGLHEDLNRVHEKPY 275

Query: 344 IKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYL 403
           ++ KD+DGRPD EVA E W N + RN SI+VD+  GQ +S + C  C  +SV FDPF +L
Sbjct: 276 VELKDSDGRPDWEVAAEAWDNQLRRNRSIVVDLFHGQLRSQVKCKTCGHISVRFDPFNFL 335

Query: 404 SLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVA 463
           SLPL   +   + +TV   DG+  P  Y + +    +   L + L ++C L  SE++ +A
Sbjct: 336 SLPLPMDSYMQLEITVIKLDGTT-PVRYGLRLNMDEKYTGLKKQLSDLCGLN-SEQILLA 393

Query: 464 EIQNHSIQRF-LDDPLISLSTIKDDDHLAAYRVP 496
           E+   +I+ F  D+  + LS       L A+ +P
Sbjct: 394 EVHGSNIKNFPQDNQKVRLSV---SGFLCAFEIP 424


>gi|328869101|gb|EGG17479.1| peptidase C19 family protein [Dictyostelium fasciculatum]
          Length = 1075

 Score =  168 bits (426), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 114/302 (37%), Positives = 142/302 (47%), Gaps = 67/302 (22%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV----------- 321
           G  GL NLGNTCFMNS++QCL HT  F  YF    Y  +IN  NPLGM            
Sbjct: 400 GACGLTNLGNTCFMNSSLQCLAHTTPFVEYFLTGKYIGDINKVNPLGMKGQIAEHFGKLM 459

Query: 322 -----------------------------------ELLAFLLDGLHEDLNRVKHKPYIKS 346
                                              ELL+FLLDGLHEDLN+V  KPYI+ 
Sbjct: 460 KDMWSGQTNVAPKNLKWIIGKYAPQFSGISQQDSQELLSFLLDGLHEDLNKVLKKPYIEE 519

Query: 347 KD--ADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLS 404
           K+   + R D  VA E W N++ RN S++V++ QGQYKSTL C  C KVSVTFD FMY++
Sbjct: 520 KEDTNEVREDSVVASEQWDNYLKRNQSVVVNLFQGQYKSTLNCSRCPKVSVTFDTFMYVT 579

Query: 405 LPLQATTTRTMTVTVFTSDGSAL----------------PSTYTVTVPKHGRCRDLIQVL 448
           LP+   T R   V +F    +                  P  Y + + K      L   L
Sbjct: 580 LPIPVPTERVFEVLLFRCKPTGTVGPDPKGIYCLNNAMDPVRYCLKLNKRDYINSLRNEL 639

Query: 449 GNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLI 508
              C +  +  L +AEI N+ I  FL D   +LS IKD D   AY +P        L +I
Sbjct: 640 SKTCGV-DTPCLALAEIYNNRINTFLSDQK-NLSFIKDRDITIAYELPVAGDSYSRLHVI 697

Query: 509 HR 510
           HR
Sbjct: 698 HR 699



 Score =  151 bits (381), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 80/187 (42%), Positives = 119/187 (63%), Gaps = 8/187 (4%)

Query: 642  VYVDWSQKLLEKY--NTHFLENLLEVFKNGPVT-KKARTEPLSLYTCLEAFLREEPLVPE 698
            V +DW  ++  KY  ++  LE    V  +  VT KK     ++L  CL  F ++E L P 
Sbjct: 872  VTIDWRPEIF-KYLCDSEILEGSPFVKDDASVTIKKDMRSEINLNDCLSLFTKKEKLGPN 930

Query: 699  DMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKY 758
            D W+CPQCK+  +  KKL+LW LP++L+IHLKRF +    + K+ ++V+FP+ +F+L+K+
Sbjct: 931  DTWFCPQCKQHNEGDKKLELWSLPKILIIHLKRFHFHHRHE-KILSYVDFPLDNFDLSKW 989

Query: 759  VANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSA 818
            V +K +    +Y+LYA++NH GGMG+GHYTA IK  + ++WY   DS    I E  VK+ 
Sbjct: 990  VLSK-TDIPPIYQLYAVSNHMGGMGAGHYTASIK--NRDQWYMISDSSYHKIEEHQVKTT 1046

Query: 819  AAYVLFY 825
             AYVLFY
Sbjct: 1047 EAYVLFY 1053



 Score = 49.7 bits (117), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 3/65 (4%)

Query: 37  RPSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKV 96
           +P  I+N D++    + D    P + +  +E  DY ++ Q +W  L  WYGGGP + R V
Sbjct: 160 KPESINNKDII---ASMDSEKEPILAENKVERDDYEIINQRIWELLVQWYGGGPAIKRSV 216

Query: 97  ISSGL 101
           +  GL
Sbjct: 217 VVLGL 221


>gi|410050929|ref|XP_003952996.1| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal
           hydrolase 6 [Pan troglodytes]
          Length = 1406

 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 107/274 (39%), Positives = 141/274 (51%), Gaps = 58/274 (21%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF---REDYRREINWQNPLGMV--------- 321
           G TGL NLGNTCFMNS+IQC+ +T    +YF   R  Y  E+N  NP+GM          
Sbjct: 530 GATGLSNLGNTCFMNSSIQCVSNTQPLTQYFISGRHLY--ELNRTNPIGMKGHMAKCYGD 587

Query: 322 --------------------------------------ELLAFLLDGLHEDLNRVKHKPY 343
                                                 ELLAFLLDGLHEDLNRV  KPY
Sbjct: 588 LVQELWSGTQKSVAPLKLRRTIAKYAPRFDGFQQQDSQELLAFLLDGLHEDLNRVHEKPY 647

Query: 344 IKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYL 403
           ++ KD+DGRPD EVA E W NH+ RN SIIVD+  GQ +S + C  C  +SV FDPF +L
Sbjct: 648 VELKDSDGRPDWEVAAEAWDNHLRRNRSIIVDLFHGQLRSQVKCKTCGHISVRFDPFNFL 707

Query: 404 SLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVA 463
           SLPL   +   + +TV   DG   P  Y + +        L + L ++C L  SE++ +A
Sbjct: 708 SLPLPMDSYMDLEITVIKLDG-ITPVRYGLRLNMDEEYTGLKKQLRDLCGLN-SEQILLA 765

Query: 464 EIQNHSIQRF-LDDPLISLSTIKDDDHLAAYRVP 496
           E+ + +I+ F  D+  + LS       L A+ +P
Sbjct: 766 EVHDSNIKNFPQDNQKVQLSV---SGFLCAFEIP 796



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 72/125 (57%), Gaps = 2/125 (1%)

Query: 642  VYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
            + VDW    L  +Y T   E +++  ++   +++A+ EP++L +CL AF  EE L   +M
Sbjct: 993  IAVDWHPTALHLRYQTS-QERVVDKHESVEQSRRAQAEPINLDSCLRAFTSEEELGESEM 1051

Query: 701  WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
            +YC +CK    A+KKLDLWRLP  L+IHLKRF +      K +  V F    F+ + ++ 
Sbjct: 1052 YYCSKCKTHCLATKKLDLWRLPPFLIIHLKRFQFVNDXWIKSQKIVKFLQESFDPSAFLV 1111

Query: 761  NKNSS 765
             ++ +
Sbjct: 1112 PRDPA 1116



 Score = 48.5 bits (114), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 1/61 (1%)

Query: 767  RQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYR 826
            + +Y LYA++ H G +  GHY  + K  +  +WY ++DS    ++ D++ + +AY+LFY 
Sbjct: 1309 KPIYNLYAISCHSGILSGGHYITYAKNPN-CKWYCYNDSSCEELHPDEIDTDSAYILFYE 1367

Query: 827  R 827
            +
Sbjct: 1368 Q 1368


>gi|342319397|gb|EGU11346.1| Ubiquitin carboxyl-terminal hydrolase [Rhodotorula glutinis ATCC
           204091]
          Length = 1438

 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 148/499 (29%), Positives = 203/499 (40%), Gaps = 114/499 (22%)

Query: 68  GRDYILLPQEVWNQLHSWYG-GGPTLARKVISSGLSQTELAVEVYP--LRLQLLVM---- 120
           G D  ++P E W  L SWYG  G +  R V++     +E  +E YP    L LLV     
Sbjct: 211 GVDVEVVPGEAWGYLTSWYGLVGTSFERDVVAPAGPGSE-TIEFYPPVFHLYLLVPTSSP 269

Query: 121 PRGECS--------TIRISKKETIGELHRRACSIFYLNLEQICIW-------DYYGHRKH 165
           P    +        T+  +       L   A   F L    + +W       +   H   
Sbjct: 270 PNASVTLPSLPTPPTVSYASSGVFSTLVEDAALAFELP-RPVRLWRLPPISDELSAHEGA 328

Query: 166 ALMN-----------------DMDRTLDDANIQMDQDILVEVLDNVNGT---NCKSSIQD 205
           A +                  D D TL DA +  D+  L     N +GT   + ++ +  
Sbjct: 329 AYVFTDKLRETGVELLDPNQIDDDTTLQDALLTDDETHLAVEQQNEDGTWMVDAEALMTA 388

Query: 206 NGFAEKKASSVLVEP----------SKSSLSI-AGGWSAS---KGTSRNHSSEISTSPNL 251
              AE  A      P           KS + I +GGWS+      T    + +       
Sbjct: 389 LAAAETDAPPSEAAPPLPEEDKSATKKSGIGIFSGGWSSGLHKPKTPGLGAGKEKEKEKP 448

Query: 252 ASARDSDNTLGSSGVTTRGASV-----GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE 306
                      + G  TR  S      GL GL NLGNTCFMNSAIQC+ +T E   YF  
Sbjct: 449 KGGNGGGILGAAMGALTRSKSTKQGQRGLVGLQNLGNTCFMNSAIQCMSNTKELQEYFLS 508

Query: 307 D-YRREINWQNPLGM--------------------------------------------- 320
             Y  E+N +NPLGM                                             
Sbjct: 509 GVYHSELNRENPLGMRGQVAEAFGQLIERLWNGTGSSVAPREFKQALARFAPQFSGYGQQ 568

Query: 321 --VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEV---ADEYWANHIARNDSIIVD 375
              ELLAFLLDG HEDLNR+K KP  ++ D +G  D+E+   A   W  + +RNDS+IVD
Sbjct: 569 DSQELLAFLLDGTHEDLNRIKKKPATEAPDWEGGGDKEMVELAKTCWEQYRSRNDSVIVD 628

Query: 376 VCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTV 435
           + QGQY+ST+VCP C+KVS+TFDPFMY++  L  T   +  + V   D +       + V
Sbjct: 629 LFQGQYRSTVVCPDCDKVSITFDPFMYVTTNLPVTKKWSGRIIVVPLDAARGTLAVDLEV 688

Query: 436 PKHGRCRDLIQVLGNICSL 454
           PK G  + L   +G +  +
Sbjct: 689 PKSGSIKTLKAAVGQLVDI 707



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 72/165 (43%), Positives = 108/165 (65%), Gaps = 17/165 (10%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            ++L  CL  F +EE L  +DMWYC +CKE +QA+KK++LW++P+VLV  LKRFS  R  +
Sbjct: 1091 ITLSDCLTEFTKEERLGEDDMWYCSRCKEFKQATKKVELWKVPDVLVFALKRFSSGRWSR 1150

Query: 740  HKLETFVNFPIHD-FNLTKYVANKNSSRR----------------QLYELYALTNHYGGM 782
             K++  V+FP+ D  ++ ++V      +R                 +Y+LYA++NH+GG+
Sbjct: 1151 EKIDDLVDFPVLDGLDMEQFVQGDKVEQRLAQQMPDAPAISEPDSLVYDLYAVSNHFGGL 1210

Query: 783  GSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            G GHYTA  K  +  +WY+FDDS ++ IN + VKS+AAY+LFYRR
Sbjct: 1211 GGGHYTAFAKNPENGKWYDFDDSRVTEINPERVKSSAAYLLFYRR 1255


>gi|330791239|ref|XP_003283701.1| hypothetical protein DICPUDRAFT_26301 [Dictyostelium purpureum]
 gi|325086324|gb|EGC39715.1| hypothetical protein DICPUDRAFT_26301 [Dictyostelium purpureum]
          Length = 1003

 Score =  167 bits (424), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/302 (36%), Positives = 145/302 (48%), Gaps = 68/302 (22%)

Query: 275 LTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLGMV------------ 321
           + GL NLGNTCFMNS++QCL HT     YF    Y  +IN  NPLGM             
Sbjct: 331 ICGLSNLGNTCFMNSSLQCLAHTIPLTEYFLSGKYACDINKTNPLGMKGQIAEIYGKLMK 390

Query: 322 -----------------------------------ELLAFLLDGLHEDLNRVKHKPYIKS 346
                                              E L+FLLDGLHEDLN+V  KPY + 
Sbjct: 391 DMWTGSSNCVAPKHLKWIIGKYAPQFSGMSQQDSQEFLSFLLDGLHEDLNKVLKKPYTEE 450

Query: 347 KD--ADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLS 404
           K+   + R D  VA E+W NHI RN SIIV++ QGQYKSTL C  C+KVS+TFDP+MY++
Sbjct: 451 KEESKEQREDAVVAAEHWENHIKRNQSIIVNLFQGQYKSTLTCSKCSKVSITFDPYMYVT 510

Query: 405 LPLQATTTRTMTVTVFTS----------------DGSALPSTYTVTVPKHGRCRDLIQVL 448
           LP+   T R   V +F                  + +  P  Y + +PK      L   L
Sbjct: 511 LPIPVPTERLFDVILFRRKPIEQLGPDPNGIYCLNNAMAPIKYCLKLPKREDVETLRVEL 570

Query: 449 GNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLI 508
             I  + +S  + +AE   + I  FL+D   SL +IKD +   AY +P   +    + ++
Sbjct: 571 SKITGI-ESSCIALAETLKNRIYTFLNDQK-SLLSIKDKEVTIAYELPHAGEDISRIHVM 628

Query: 509 HR 510
           HR
Sbjct: 629 HR 630



 Score =  142 bits (358), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 70/149 (46%), Positives = 103/149 (69%), Gaps = 5/149 (3%)

Query: 680 LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY-SRSM 738
           ++LY CL  F + E L   D WYCP CK   +A+KKL+LW  P++LVIHLKRF Y S + 
Sbjct: 847 ITLYDCLSIFTKNEELKKNDTWYCPDCKAHIEATKKLELWSAPKILVIHLKRFQYTSYTH 906

Query: 739 KH-KLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDEN 797
           +H K+  +V+FP+ + +++K V NK S    +Y+LYA++NH G MGSGHYT+ +K  +++
Sbjct: 907 RHEKINYYVDFPLDNLDISKLVLNK-SYPPPVYQLYAISNHMGVMGSGHYTSCVK--NKD 963

Query: 798 RWYNFDDSHISPINEDDVKSAAAYVLFYR 826
           +WY   DS   PI++  +KS+ AYVLFY+
Sbjct: 964 QWYLISDSSYRPIDKLKIKSSDAYVLFYQ 992


>gi|159488883|ref|XP_001702430.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158271098|gb|EDO96925.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 347

 Score =  167 bits (424), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 81/165 (49%), Positives = 108/165 (65%), Gaps = 12/165 (7%)

Query: 674 KARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFS 733
           ++R  P++L  C+  FL+ E L   D WYCP+CKE   A KKLDLW LPEVLV+HLKRFS
Sbjct: 184 ESRRRPVALEDCMRVFLQPERLDESDAWYCPRCKEHVCADKKLDLWSLPEVLVVHLKRFS 243

Query: 734 YSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKL 793
           Y+R  ++KL+T V+FP+H  +L  YV  +      LY+ +A++NH+G MG GHYTA+ KL
Sbjct: 244 YTRYSRNKLDTRVDFPLHGLDLGSYVL-RAQGVAPLYDCFAVSNHFGSMGGGHYTAYAKL 302

Query: 794 L-----------DENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
                           WY FDDSH+S +  + V+S+AAYVLFYRR
Sbjct: 303 PGPPPGTAAGADGAEAWYCFDDSHVSAVEPEAVRSSAAYVLFYRR 347



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 83/192 (43%), Positives = 101/192 (52%), Gaps = 48/192 (25%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHT-PEFARYFREDYRREINWQNPLGMV----------- 321
           GL GL NLGNTCFMNS++QCL H  P    +    Y +++N  NPLGM            
Sbjct: 1   GLAGLSNLGNTCFMNSSLQCLAHAVPLMQAFLGGTYIKDLNRTNPLGMKGELAEAFGMLL 60

Query: 322 ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E LAFLLDGLHED NR+K KPY +
Sbjct: 61  QQLWRGGVSSVSPRSFKAKIGRFAPQFSGYAQHDSQEFLAFLLDGLHEDTNRIKTKPYFE 120

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           +KD  GRPDEE+A E W+ + ARN+S++VD  QG  KS L CP C   SV FDPFMYLSL
Sbjct: 121 TKDEPGRPDEELATEAWSQYRARNNSLVVDHFQGLLKSGLDCPKCAYHSVKFDPFMYLSL 180

Query: 406 PLQATTTRTMTV 417
           PL  +  R + +
Sbjct: 181 PLPESRRRPVAL 192


>gi|302850164|ref|XP_002956610.1| hypothetical protein VOLCADRAFT_67166 [Volvox carteri f.
           nagariensis]
 gi|300258137|gb|EFJ42377.1| hypothetical protein VOLCADRAFT_67166 [Volvox carteri f.
           nagariensis]
          Length = 656

 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 96/229 (41%), Positives = 120/229 (52%), Gaps = 48/229 (20%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV----------- 321
           GL GL NLGNTCFM+S++QCL H     R F    Y +++N  NPLGM            
Sbjct: 1   GLAGLTNLGNTCFMSSSLQCLAHAVPLMRAFLGGGYLQDLNRSNPLGMKGELAEAFGGLM 60

Query: 322 ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E LAFLLDGLHED NR+K+KPYI+
Sbjct: 61  EQLWRGGLSAVTPRSFKAKIGRFAPQFSGYAQHDSQEFLAFLLDGLHEDTNRIKNKPYIE 120

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
            KD  GRPDE VA E W+N+ ARNDS++VD  QG +KST+ CP C   SV FDPFMYLSL
Sbjct: 121 EKDLHGRPDEAVAAEAWSNYRARNDSLVVDHFQGLFKSTVDCPQCGFNSVKFDPFMYLSL 180

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSL 454
           PL  +  R + V +  +DGS LPS   + +       DL++   +   L
Sbjct: 181 PLPESRRRVVEVVLVHTDGSELPSRMALELASGATLGDLLRATASTAGL 229



 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 83/169 (49%), Positives = 108/169 (63%), Gaps = 17/169 (10%)

Query: 675 ARTEPLSLYTCLEAFLREEPLVPEDMW--YCPQCKERRQASKKLDLWRLPEVLVIHLKRF 732
           A  +P+SL  C+  FL+ E L   D W  YCP+CK    A KKLDLW LPEVLV+HLKRF
Sbjct: 441 AGPQPVSLDACMTTFLQPERLAESDAWWAYCPRCKSHVCADKKLDLWSLPEVLVVHLKRF 500

Query: 733 SYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIK 792
           SY+R  ++KL+T V+FP+H  +L  YV    S    +Y+L+A++NHYG MG GHYTA+ K
Sbjct: 501 SYTRYSRNKLDTPVDFPLHGLDLGPYVLRPQSV-PPVYDLFAVSNHYGSMGGGHYTAYAK 559

Query: 793 LLDE--------------NRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           L                 +RWY FDDS +S ++ + V+S AAYVLFYRR
Sbjct: 560 LPSPPQDAQTQEAATHSGDRWYCFDDSRVSSVDPEGVRSPAAYVLFYRR 608


>gi|134113753|ref|XP_774461.1| hypothetical protein CNBG1070 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50257099|gb|EAL19814.1| hypothetical protein CNBG1070 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 1487

 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 134/489 (27%), Positives = 208/489 (42%), Gaps = 114/489 (23%)

Query: 67  EGRDYILLPQEVWNQLHSWYG--GGPTLARKVISSGLSQTELAVEVYPLRLQLLVMPRGE 124
           E  DY+ +P+  W ++  W+G   GP+L R  +          +E+ P  L+L ++   +
Sbjct: 280 ENEDYVFVPETGWQKVLEWFGPYDGPSLPRYCVPPD------NIEIIPANLRLFIVLPAD 333

Query: 125 CSTIRISKKETIGEL------------HRRACSIFYLNLEQICIWDYYGHR----KHALM 168
             T      E+I  +               A S+    +++  +   +  R    + +  
Sbjct: 334 AITTAGQPDESIQSVLLAPSTTPIKTFESFAVSVCNQEIDRSKLAGQWATRLWKIEKSGE 393

Query: 169 NDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIA 228
           ND +  L   ++++    L+        T C+  + D   AE+  +  ++  SKS +   
Sbjct: 394 ND-ESLLKSGSLEITPKALIS-------TKCQ--LIDTSSAEENLAEAILGSSKSQIIAI 443

Query: 229 GGWSASKGTS-----------------RNHSSEISTSPNLASARD---SDNTLGSSGVTT 268
                 +G+S                  N  + + + P   S      S++   +  + T
Sbjct: 444 EFGKIPEGSSTPVWNVEVNNDKQAIEKSNKPAPLFSKPAFFSGSGKAASESASTTDAIQT 503

Query: 269 RGAS-----VGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV- 321
           R  +      GL GL NLGNTCFMNSA+QCL +T E ++YF    Y  E+N  NPLGM  
Sbjct: 504 RSQTRERKGKGLVGLQNLGNTCFMNSAVQCLSNTKELSQYFLSGVYTEELNRDNPLGMQG 563

Query: 322 -------------------------------------------------ELLAFLLDGLH 332
                                                            E +AFLLDGLH
Sbjct: 564 QIAEAFGQVVENLWAPTSSMHSSYSPRQLKWTTSRFAPQFAGYGQHDTQEFIAFLLDGLH 623

Query: 333 EDLNRVKHKPYIKSKD-ADGRPDEEVAD---EYWANHIARNDSIIVDVCQGQYKSTLVCP 388
           EDLNR+  KPYI+  D   G  D+E+A+   E W  +  RNDS+IVD+ QGQ KSTLVCP
Sbjct: 624 EDLNRILKKPYIEKPDWKPGGGDKELAELGKECWDGYKKRNDSVIVDLFQGQLKSTLVCP 683

Query: 389 VCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVL 448
            C+K S+TFDPFMYL++PL     R   +T    D    P    + +P++     +   +
Sbjct: 684 ECHKESITFDPFMYLTVPLPIAQNRQFKITFVPRDTEKPPVNVKLLIPQNASFAQVKDKI 743

Query: 449 GNICSLKQS 457
           G++   K S
Sbjct: 744 GSLFDCKGS 752



 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 71/187 (37%), Positives = 112/187 (59%), Gaps = 19/187 (10%)

Query: 660  ENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLW 719
            E++++   +  + KK   + + +  CL+ F +EE L  +D+WYCP CK+ + A+KKL+++
Sbjct: 1114 EDVIDPAISKELVKKREGKHIGIEDCLDEFSKEETLGQDDLWYCPVCKKHQAATKKLEIY 1173

Query: 720  RLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRR------------ 767
            + P++LVI +KRF  SR M  KL+  V+FPI   +L   +  +  ++             
Sbjct: 1174 KAPDILVICIKRFGSSRRMGDKLDNLVHFPIDGLDLEDRIGERQVAKTLKLNGEDVEGYG 1233

Query: 768  -------QLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAA 820
                    LY+LYA+ NH+GGMG GHYTA  +   +N+WYN+DDS +S  +   V+S AA
Sbjct: 1234 IEDDGEPLLYDLYAVDNHFGGMGGGHYTAFCRNQVDNQWYNYDDSRVSKADVSSVQSRAA 1293

Query: 821  YVLFYRR 827
            Y+LFYRR
Sbjct: 1294 YLLFYRR 1300


>gi|37330|emb|CAA45108.1| oncogene [Homo sapiens]
 gi|119610760|gb|EAW90354.1| hCG1991532, isoform CRA_a [Homo sapiens]
 gi|222080034|dbj|BAH16658.1| ubiquitin specific peptidase 6-short [Homo sapiens]
          Length = 786

 Score =  167 bits (422), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 100/248 (40%), Positives = 132/248 (53%), Gaps = 54/248 (21%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF---REDYRREINWQNPLGMV--------- 321
           G TGL NLGNTCFMNS+IQC+ +T    +YF   R  Y  E+N  NP+GM          
Sbjct: 530 GATGLSNLGNTCFMNSSIQCVSNTQPLTQYFISGRHLY--ELNRTNPIGMKGHMAKCYGD 587

Query: 322 --------------------------------------ELLAFLLDGLHEDLNRVKHKPY 343
                                                 ELLAFLLDGLHEDLNRV  KPY
Sbjct: 588 LVQELWSGTQKSVAPLKLRRTIAKYAPKFDGFQQQDSQELLAFLLDGLHEDLNRVHEKPY 647

Query: 344 IKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYL 403
           ++ KD+DGRPD EVA E W NH+ RN SIIVD+  GQ +S + C  C  +SV FDPF +L
Sbjct: 648 VELKDSDGRPDWEVAAEAWDNHLRRNRSIIVDLFHGQLRSQVKCKTCGHISVRFDPFNFL 707

Query: 404 SLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVA 463
           SLPL   +   + +TV   DG+  P  Y + +    +   L + L ++C L  SE++ +A
Sbjct: 708 SLPLPMDSYMDLEITVIKLDGTT-PVRYGLRLNMDEKYTGLKKQLRDLCGL-NSEQILLA 765

Query: 464 EIQNHSIQ 471
           E+ + +I+
Sbjct: 766 EVHDSNIK 773


>gi|432845632|ref|XP_004065833.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 43-like [Oryzias
           latipes]
          Length = 1184

 Score =  167 bits (422), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 157/635 (24%), Positives = 269/635 (42%), Gaps = 96/635 (15%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFR-EDYRREI---------NWQNPLGMVEL 323
           G+ GL N GNTCFMN+ +QCL +T   A Y   E Y+ +I           + P  +   
Sbjct: 120 GVLGLKNHGNTCFMNAVVQCLSNTDLLAEYLGLEQYKSDICQGRVNGEERGEEPQAVRGE 179

Query: 324 LAFLLDGLHEDLNRVKHKPYIK---------------------------------SKDAD 350
           +   L  L   L  +++ P +                                   +DA+
Sbjct: 180 VTEQLAALIRALWTLEYTPQLSVDFKSIVAKYSSQFRGNSQHDALEFLLWLLDRVHEDAN 239

Query: 351 GRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQAT 410
             PD                S + +  Q QY+S+L CP C K S TFDPF+ +SLP+   
Sbjct: 240 TNPDNGNNRNPSTQQPRSRHSFVQEHFQAQYRSSLTCPHCLKQSNTFDPFLCISLPIPLR 299

Query: 411 TTRTMTVT-VFTSDGSALPSTYTVTVPKHGRC---RDLIQVLGNICSLKQSEELKVAEIQ 466
            TR + VT VF++ G        + VP  G     R +    GNI      +++ +AE+ 
Sbjct: 300 QTRALCVTLVFSAKGQRY-VRVGLAVPLFGSISTLRTMTAAEGNIA----PDQVILAELY 354

Query: 467 NHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWK 526
           +   QR   D    L+ I D D + A++ P +  +         + ++ P + + +S++ 
Sbjct: 355 STGFQRSFSDE-DELTMIADSDVVYAFQAPPVSNRGGLTPHSDFIGQKLPQSGRLSSEYL 413

Query: 527 AYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHA-DSFDPSSMVTTVDPSGEA 585
            + +     +   + + SG+      R   PFL  E    + D    S +         A
Sbjct: 414 NHSSSSKVILLMCNTVGSGQ---HAARFGPPFLMVEDRTVSWDQLTQSILSNLYYLMANA 470

Query: 586 HSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRI--PSSSTSIVVY 643
             + ++ +  +      +     L  Q  D   +C       D+ +++  P     + + 
Sbjct: 471 SQSQTAGVLFKIRVVGSSAAYSYLSPQ--DSRPLCHPAV---DRALKLCGPGGPLHVKLV 525

Query: 644 VDWSQKLLEKYNTHFLENLL---EVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
           ++W +   E       E ++   E  +N    +  +    +L  C + + +EE L P+D 
Sbjct: 526 IEWERSTKEHLFGSIQEEVVQDAESVRNQ-QQQHLQQHSCTLDECFQLYTKEEQLAPDDA 584

Query: 701 WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
           W CP CK+ +Q   K++LW LP++L++HLKRF      ++KL T V FP+   ++  +V 
Sbjct: 585 WKCPHCKQLQQGMVKMNLWTLPDILILHLKRFRQVGERRNKLSTLVGFPLTGLDMAPHVV 644

Query: 761 NKNSS----------------------------RRQLYELYALTNHYGGMGSGHYTAHIK 792
            ++ S                            R  LY+LYA+ NH+GGM  GHYTA+ +
Sbjct: 645 KRSQSMKNLHQGSSQTNRRPSSGQHQRSDIMLARDYLYDLYAVCNHHGGMHGGHYTAYCR 704

Query: 793 LLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
              +  WY++DDS +  + E++V +  AY+LFY+R
Sbjct: 705 NSVDALWYSYDDSSVDLVPEEEVCTKGAYILFYQR 739


>gi|74190269|dbj|BAE37232.1| unnamed protein product [Mus musculus]
          Length = 199

 Score =  166 bits (420), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 75/155 (48%), Positives = 108/155 (69%), Gaps = 1/155 (0%)

Query: 673 KKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF 732
           +K +   ++L  C+E F   E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRF
Sbjct: 5   QKKKKAAVALRECIELFTTMETLGEHDPWYCPTCKKHQQATKKFDLWSLPKILVVHLKRF 64

Query: 733 SYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIK 792
           SY+R  + KL+T V FP+   N++++V ++ S+R  +Y+L A++NHYG MG GHYTA+ K
Sbjct: 65  SYNRYWRDKLDTVVEFPVRALNMSEFVCDR-SARPYVYDLIAVSNHYGAMGVGHYTAYAK 123

Query: 793 LLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
                +WY FDDS +S  +ED + + AAYVLFY+R
Sbjct: 124 NRLNGKWYYFDDSSVSLASEDQIVTKAAYVLFYQR 158


>gi|241594842|ref|XP_002404393.1| ubiquitin specific protease, putative [Ixodes scapularis]
 gi|215500387|gb|EEC09881.1| ubiquitin specific protease, putative [Ixodes scapularis]
          Length = 1583

 Score =  166 bits (420), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 116/295 (39%), Positives = 150/295 (50%), Gaps = 58/295 (19%)

Query: 265 GVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV-- 321
           G T +GA    TGL NLGNTCFMN+A+QC+ +T    +YF  E +  E+N  NPLGM   
Sbjct: 669 GPTEKGA----TGLNNLGNTCFMNAALQCVSNTRPLTQYFIGEKHLYELNRLNPLGMKGH 724

Query: 322 ---------------------------------------------ELLAFLLDGLHEDLN 336
                                                        ELLAFLLDGLHEDLN
Sbjct: 725 IAKRYGDLVHDLWSGTSKTVAPLKLRWTIGKYAPRFNGFQQHDSQELLAFLLDGLHEDLN 784

Query: 337 RVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVT 396
           RV+ KPY++ KD+ GRPD+EVA E W NH  RN S++VD+  GQ +ST+ C VC+  SV 
Sbjct: 785 RVQEKPYVELKDSAGRPDDEVAREAWENHALRNRSVVVDLFHGQLQSTVTCKVCSHTSVR 844

Query: 397 FDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQ 456
           FDPF +LSLPL   +   + V V   DGSA P  Y + +    R   + + LG +C L  
Sbjct: 845 FDPFNFLSLPLPMESCVHVEVVVVRLDGSA-PIRYGLQLNPDERYATVKRHLGALCGLAP 903

Query: 457 SEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQ-LIHR 510
           +  L +AE+    ++  L D     +T      L AY VP     AVF + L HR
Sbjct: 904 AHML-LAEVCGAVVRALLPDERRVQATALGAG-LFAYEVPG--DAAVFEEDLAHR 954



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 770  YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            Y++YAL  H G +G GHY ++      NRWY ++DS    +  D + S +AY+LFY R
Sbjct: 1490 YQMYALACHTGILGGGHYVSY-ACNPNNRWYCYNDSSCKEVQLDQIDSDSAYMLFYER 1546



 Score = 53.1 bits (126), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 6/87 (6%)

Query: 36  KRPSGIDNSDLVNDATAED---PGAGPEIVDT--LLEGRDYILLPQEVWNQLHSWYGGGP 90
           +RP  IDN+ L+   T +     G G  +     L +GRD+  +P+ VW  L  WYGG P
Sbjct: 461 QRPPSIDNTGLIVPNTVKAMVLTGEGGRLQRQVPLCQGRDFEAVPEAVWRALFQWYGGSP 520

Query: 91  TLARKVISSGLSQTELAVEVYPLRLQL 117
            L R+V+      +   +E+YP+ L+L
Sbjct: 521 ALPRQVVRPTPGASP-ELELYPITLRL 546


>gi|405121660|gb|AFR96428.1| ubiquitin carboxyl-terminal hydrolase 12 [Cryptococcus neoformans
           var. grubii H99]
          Length = 1418

 Score =  166 bits (420), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 130/483 (26%), Positives = 210/483 (43%), Gaps = 102/483 (21%)

Query: 67  EGRDYILLPQEVWNQLHSWYG--GGPTLARKVISSGLSQTELAVEVYPLRLQLLVMPRGE 124
           E  DY+ +P+  W ++  W+G   GP+L R  +          +E+ P  L+L ++   +
Sbjct: 211 ENEDYVFVPETGWKKVLEWFGPYDGPSLPRYCVPPD------NIEIIPANLRLFIVLPAD 264

Query: 125 CSTIRISKKETIGEL------------HRRACSIFYLNLEQICIWDYYGHR----KHALM 168
             T      E+I  +               A S+    +++  +   +  R    + +  
Sbjct: 265 AITTAGQPDESIQSVLLAPSTTPIKTFESFAVSVCNQEIDRSSLAGQWATRLWKIEKSGE 324

Query: 169 NDMDRTLDDANIQMDQDILVEV-LDNVNGTNCKSSIQDNGFAEKKASSVLVE----PSKS 223
           ND +  L   ++++  + L+      ++ ++ + ++ +      K+  + +E    P  S
Sbjct: 325 ND-ESLLKSGSLEITPNALISTKCQLIDTSSAEENLAEAILGSSKSQVIAIEFGKIPEGS 383

Query: 224 SLSIAGGWSASKGTSR------NHSSEISTSPNLASARD---SDNTLGSSGVTTRGAS-- 272
           S  +   W+      +      +  + + + P   S      S++   +  V TR  +  
Sbjct: 384 STPV---WNVDVNNDKQAIEKSDKPAPLFSKPAFFSGSGKAASESASSTDAVQTRSQTRE 440

Query: 273 ---VGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV------- 321
               GL GL NLGNTCFMNSA+QCL +T E ++YF    Y  E+N  NPLGM        
Sbjct: 441 RKGKGLVGLQNLGNTCFMNSAVQCLSNTKELSQYFLSGVYTDELNRDNPLGMQGQIAEAF 500

Query: 322 -------------------------------------------ELLAFLLDGLHEDLNRV 338
                                                      E +AFLLDGLHEDLNR+
Sbjct: 501 GQVVENLWAPSSSMHSSYSPRQLKWTTSRFAPQFAGYGQHDTQEFIAFLLDGLHEDLNRI 560

Query: 339 KHKPYIKSKD-ADGRPDEEVAD---EYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVS 394
             KPYI+  D   G  ++E+A+   E W  +  RNDS+IVD+ QGQ KSTLVCP C+K S
Sbjct: 561 LKKPYIEKPDWKPGGGNKELAELGKECWDGYKKRNDSVIVDLFQGQLKSTLVCPECHKES 620

Query: 395 VTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSL 454
           +TFDPFMYL++PL     R   VT    D    P    + +P++     +   +G++   
Sbjct: 621 ITFDPFMYLTVPLPIAQNRQFKVTFVPRDTEKPPVNVKLLIPQNASFAQVKDKIGSLFDC 680

Query: 455 KQS 457
           K S
Sbjct: 681 KGS 683



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 78/214 (36%), Positives = 116/214 (54%), Gaps = 35/214 (16%)

Query: 642  VYVDWSQKLLEKYNTHFLENLLEVFKNGPV---------TKKARTEPLSLYTCLEAFLRE 692
            ++ +WS          F E L +  K G V          KK   + + +  CL+ F +E
Sbjct: 1025 IFCEWS-------GADFAEWLNDNVKGGDVIDPAISKDLAKKREGKHIGIEDCLDEFSKE 1077

Query: 693  EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHD 752
            E L  +D+WYCP CK+ + A+KKL++++ P++LVI +KRF  SR M  KL+  V+FPI  
Sbjct: 1078 ETLGQDDLWYCPVCKKHQAATKKLEIYKAPDILVICIKRFGSSRRMGDKLDNLVHFPIDG 1137

Query: 753  FNLTKYVANK-------------------NSSRRQLYELYALTNHYGGMGSGHYTAHIKL 793
             +L   +  +                   +     LY+LYA+ NH+GGMG GHYTA  + 
Sbjct: 1138 LDLEDRIGERQVVKTLKLNGEDVEAYGIEDDGEPLLYDLYAVDNHFGGMGGGHYTAFCRN 1197

Query: 794  LDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
              +N+WYN+DDS +S  +   V+S AAY+LFYRR
Sbjct: 1198 QVDNQWYNYDDSRVSKADVSSVQSRAAYLLFYRR 1231


>gi|145482423|ref|XP_001427234.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124394314|emb|CAK59836.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1041

 Score =  165 bits (418), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 129/455 (28%), Positives = 195/455 (42%), Gaps = 106/455 (23%)

Query: 64  TLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLV---- 119
            L E +DYI++ Q++ N L+  Y G P + R  +  G    ++ V ++     L++    
Sbjct: 123 NLQEDKDYIVISQQIQNYLNQNYRG-PQIVRNSVGQG-KDKKVVVNLFKFNAALILPNTI 180

Query: 120 -------MPRGECSTIRISKKETIGELH---RRACSIF---YLNLEQICIWDYYGHRK-- 164
                  + + E   ++  +   + + +   ++    F   Y N   + IW Y       
Sbjct: 181 IQIAQDNLTQFEKEYLQADENCVLKDFYALIQKTVHTFRGNYNNQNGVRIWRYKNQNDPH 240

Query: 165 HALMNDMDRTLDDANIQMDQ--DILVEVLDNVNGTNCKS-SIQDNGFAEKKASSVLVEPS 221
            AL  ++ + + D +   DQ  D   + ++N      KS  + DN         V++E  
Sbjct: 241 KALFAEIRKQVQDLDFNDDQVFDFSGDPIENSADITLKSLKLTDNDL-------VVIEFQ 293

Query: 222 KS---------SLSIAGGWSASKGTSRNH-----------------SSEISTSPNLASAR 255
           +S         S+ I G   +    S  H                 + E    P      
Sbjct: 294 QSFKPWCIRHPSVPIEGKCESCGSISELHFPCKCKKVAYCSEKCKVNDERYHLPKCDPCG 353

Query: 256 DSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINW 314
             D  + +  ++ +    G+ GL NLGNTCFMNS  QCL +T + + YF    Y  EIN 
Sbjct: 354 SDDEQVKNMNISEQSVK-GVAGLGNLGNTCFMNSGTQCLSNTYQLSEYFITNKYFDEINE 412

Query: 315 QNPLGM-----------------------------------------------VELLAFL 327
            NPLG                                                 EL+ FL
Sbjct: 413 DNPLGTNGQLVRKYASLIKKLWCGDKNIVIPTSFKKAVGQFQPMFKGFQQHDSSELITFL 472

Query: 328 LDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVC 387
           LDGLHEDLNRVK KPY++SKD  G+PD EVA E W NH+ARN SIIVD+  GQYKSTL C
Sbjct: 473 LDGLHEDLNRVKKKPYVESKDNQGKPDFEVAKESWQNHLARNQSIIVDLMHGQYKSTLKC 532

Query: 388 PVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTS 422
           P C+++S+TFDPF+   L + +   +++ +    S
Sbjct: 533 PTCSQISITFDPFLTCGLSIPSKKLKSIQIKAIKS 567



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 64/175 (36%), Positives = 102/175 (58%), Gaps = 25/175 (14%)

Query: 678  EPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRS 737
            + ++L  CL+   + E L  ++ WYC  CKE  QA K + +++  ++L+  LKRF  S  
Sbjct: 853  QKVTLQECLKQSEQPEQLAEDNAWYCKICKEHVQAFKSMQIYKASDILIFTLKRFKASSG 912

Query: 738  M-KHKLETFVNFPIHDFNLTKYVANKN------------------------SSRRQLYEL 772
              K KLETFV+FP+   +LT+++ NKN                          ++ +Y+L
Sbjct: 913  FFKQKLETFVDFPVKGLDLTEFILNKNRPLDYDKETQQKEMIEEEFPEKRDDHKKLIYDL 972

Query: 773  YALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            +A++NH+GGMG GHYTA  K     +WYNFDD+ ++ ++ED + + +AYVLFY+R
Sbjct: 973  FAVSNHFGGMGGGHYTAFGKNHLNGKWYNFDDAQVNEVDEDQIITKSAYVLFYKR 1027


>gi|443702950|gb|ELU00773.1| hypothetical protein CAPTEDRAFT_224225 [Capitella teleta]
          Length = 1175

 Score =  165 bits (418), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 117/341 (34%), Positives = 151/341 (44%), Gaps = 85/341 (24%)

Query: 188 VEVLDNVNGTNCKSSIQDNGFAEKKASSVLVE--PSKSSLSIAGGWSASKGTSRNHSSEI 245
           V V+D++   +CK  ++DN      A  V V+    ++S S A    AS         E+
Sbjct: 258 VNVVDSLITDDCKFKVKDNVIELTLAKKVAVKWGALEASQSKAALIPASDHWVSPTKQEL 317

Query: 246 STSPNLASARDSD-----------------NTLGSSGVTTRGASV--------------- 273
           STS      R S+                 N +G   V  +   +               
Sbjct: 318 STSEKSKVERSSEKAAHWLNSQSTKTASRMNIVGEKDVVQKPTCMVSPLSKEDYKTGHVT 377

Query: 274 --GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLG----------- 319
             G TGL NLGNTCFMN+ +Q L +  E   YF    ++ EIN  N LG           
Sbjct: 378 MPGFTGLDNLGNTCFMNAPLQVLANMGELRDYFLNGQFQSEINQHNVLGSGGKLAVHFAY 437

Query: 320 ------------------------------------MVELLAFLLDGLHEDLNRVKHKPY 343
                                                 E +AFLLDGLHEDLNRV  KPY
Sbjct: 438 LMRNIWSGSHRSFAPTKLKALVGSKWNQFMGYAQHDAQEFMAFLLDGLHEDLNRVIEKPY 497

Query: 344 IKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYL 403
            +  D+DGRPDE VADE W  H  RNDS IVD+ QGQYKS LVCPVC+KVS+TFDPFM L
Sbjct: 498 TEQVDSDGRPDETVADEAWDVHKRRNDSFIVDLFQGQYKSKLVCPVCSKVSITFDPFMIL 557

Query: 404 SLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDL 444
            +PL     R + VT F+ +    P+ + + + K  +   L
Sbjct: 558 PVPL-PKKQRLLPVTFFSLEPRKKPTKFILKLSKDAKIEQL 597



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 68/158 (43%), Positives = 96/158 (60%), Gaps = 10/158 (6%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRS-M 738
            ++L  CL  F   E L PE  W+CP CKE R+A+K+L +WRLP  LVI LKRFS+    +
Sbjct: 910  ITLDQCLSLFTEPEVLSPEYTWFCPGCKEHREATKQLSIWRLPNTLVIQLKRFSFRNFLL 969

Query: 739  KHKLETFVNFPIHDFNLTK-YVANKNSSR-RQLYELYALTNHYGGMGSGHYTAHIKLLDE 796
            + K++  +NFP    +L+K Y+ N+ S+    +Y+L+ + NH+GG+  GHYTA+ +  D 
Sbjct: 970  RDKIDKQINFPARGLDLSKYYIGNRPSNEPPPIYDLFGVVNHHGGIMGGHYTAYARCPDP 1029

Query: 797  N-------RWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
                     W  FDDS +S   E  V + AAYVLFYRR
Sbjct: 1030 QDAKRSLIDWRLFDDSIVSSSAESQVVTRAAYVLFYRR 1067


>gi|403357853|gb|EJY78563.1| Ubiquitin carboxyl-terminal hydrolase [Oxytricha trifallax]
          Length = 1249

 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 144/498 (28%), Positives = 206/498 (41%), Gaps = 133/498 (26%)

Query: 38  PSGIDNSDLVNDATA------EDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGPT 91
           P  I N  L+ + +       ED      I D  +EG DY L+P+ VW  L   +GG   
Sbjct: 20  PGKITNESLLKNQSEYLREDDEDDPTNFVIRDDCMEGIDYKLIPRRVWKVLEQRFGGYAI 79

Query: 92  LARKVISSGLSQT----------------ELAVEVYPLRLQLLVMPRGECSTIRISKK-- 133
           + RK   +   +                 ++++E +PL + + + P  E +  RI KK  
Sbjct: 80  IRRKDPDTYNRKYTIKFPHFPILILPPAGQISLESFPLPMPIYMEP--EDTFERIQKKIN 137

Query: 134 ----ETIGELHRR------ACSIFYL---------------------------------- 149
               +  GE  R        C   Y                                   
Sbjct: 138 RIVNKMFGENERHIPIRVWKCDQSYQVYQKFKRFVDQYDLDKPSLLLKIQESEGQPQVDK 197

Query: 150 NLEQICIWDYYGHRKHALMN----DMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQD 205
           N+E+    ++ G +  +++     DMDR   D  I+ DQD+ V    N  G       +D
Sbjct: 198 NIEENSGIEFPGQQLDSILQKTYKDMDRG--DQGIRSDQDLFVVEQANQAGQFIFRFNKD 255

Query: 206 NGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSG 265
            G   K  +  +    KS   I    S    + R +  +           D++N +  S 
Sbjct: 256 PGTYGKCENCYMTGQLKSKC-ICKKVSYCNESCRKNDEKYHLP-----KCDAENEVDFSK 309

Query: 266 VTTRGAS---VGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV 321
           +     S    G+ GL NLGNTCFMNSA+QCL +T    +YF E  +  EIN  NPLG  
Sbjct: 310 LAFEKQSDSRNGVVGLYNLGNTCFMNSALQCLSNTWALTKYFLEKHFIGEINEDNPLGTK 369

Query: 322 -----------------------------------------------ELLAFLLDGLHED 334
                                                          E L FLLD LHED
Sbjct: 370 GHLVFQYAKLLNELWNKGSDTFTPNQLKNVIGKQNAMFQGNAQHDSQEFLNFLLDTLHED 429

Query: 335 LNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVS 394
           LNRV+ KPY++++D++ RPDE VA E+W  H+ RN SIIVD+ QGQY+STL CP CN++S
Sbjct: 430 LNRVQKKPYVETQDSNNRPDEVVAKEFWDGHLQRNMSIIVDLFQGQYRSTLKCPNCNRIS 489

Query: 395 VTFDPFMYLSLPLQATTT 412
           V+FDP+M + LP+    T
Sbjct: 490 VSFDPYMSIPLPIPLNFT 507



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 63/158 (39%), Positives = 103/158 (65%), Gaps = 4/158 (2%)

Query: 674  KARTEPLS-LYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF 732
            K++++P   +  CLE F   E L  ++ WYC +CK+  QASK ++++ +P V++  L+RF
Sbjct: 947  KSKSKPTQQIQDCLEYFRHTEKLDKDNSWYCNKCKDHVQASKTIEIYSVPPVIIFCLQRF 1006

Query: 733  -SYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQL-YELYALTNHYGGMGSGHYTAH 790
             S++   K KLE  + FPI+D +++ +V +K      L Y+LYA++NHYG +  GHYTA+
Sbjct: 1007 KSHNIYFKDKLEDKIVFPINDLDMSPFVVSKEQKNSSLLYDLYAVSNHYGSLSFGHYTAY 1066

Query: 791  IKLLDENRWYNFDDSHISPIN-EDDVKSAAAYVLFYRR 827
             K  +  RWY+++DS++S  +   +V S AAYVL+Y R
Sbjct: 1067 AKNHETGRWYDYNDSNVSECHSSSEVVSGAAYVLYYVR 1104


>gi|401881283|gb|EJT45585.1| ubiquitin carboxyl-terminal hydrolase 12 [Trichosporon asahii var.
           asahii CBS 2479]
          Length = 1328

 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 120/352 (34%), Positives = 154/352 (43%), Gaps = 86/352 (24%)

Query: 167 LMNDMDRTLDDANIQMDQDILVEVLDN--VNGTNCKSSIQDNGFAEKKASSVLVEPSKSS 224
           +M+  DRTL D       DI++EV  +      +   +   NG A +K   +  +P+  S
Sbjct: 317 MMSGNDRTLADGGFADGDDIVLEVSSSSSAGAVDWPLTADANGNATEKLQPLFGKPAFYS 376

Query: 225 LSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNT 284
            + A G S S   + N     S S                   TR    GL GL NLGNT
Sbjct: 377 GNSAAGSSTSSLAAFNKPQTRSQS------------------RTRSGH-GLVGLNNLGNT 417

Query: 285 CFMNSAIQCLVHTPEFARYFRED-------------YRREINWQNPLGM----------- 320
           CFM SA QCL +T   A YF  +             YR E+N  NPLGM           
Sbjct: 418 CFMASATQCLSNTSVLADYFLCEFSLGALKLISAGVYREELNPDNPLGMHGQVAEAFGET 477

Query: 321 -------------------------------------VELLAFLLDGLHEDLNRVKHKPY 343
                                                 E LAFLLDGLHEDLNR+K KPY
Sbjct: 478 LEALWTSPAHSSFSPRRLKSTCSRFAPQFAGYGQHDTQEFLAFLLDGLHEDLNRIKKKPY 537

Query: 344 IKSKD-ADGRPDEEVAD---EYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDP 399
           I+  D   G  D E+A+   E W  +  RNDS+IVD+ QGQ +STLVCP C+K S+T DP
Sbjct: 538 IEKPDWKPGGGDRELAELGKECWEGYKKRNDSVIVDLFQGQLQSTLVCPECHKESITMDP 597

Query: 400 FMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNI 451
           FMYL++P+  T TRT     F  D    P    + VP +     + + LG +
Sbjct: 598 FMYLTVPMPITQTRTFKCIYFPKDTDLAPVNVQLLVPANASFSTVKEKLGQL 649



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 74/213 (34%), Positives = 125/213 (58%), Gaps = 26/213 (12%)

Query: 641  VVYVDWSQKLLEKYNTHFLENLL---EVFKNGPVTK----KARTEPLSLYTCLEAFLREE 693
             ++V W     E++     E LL   E+  +  + K    K R   ++L  CL+ F +EE
Sbjct: 953  ALFVQWKNSKFEEFFEPRREQLLRGLELVVDPAIAKDAEKKGRGRAITLDDCLDEFSKEE 1012

Query: 694  PLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDF 753
             L  +D+WYCP CK+ + A+KKL++++ P++LVI +KRF  +R+++ KL+  V+FP    
Sbjct: 1013 TLGQDDLWYCPVCKKHQPATKKLEIYKAPDILVICIKRFGSARTLRDKLDHMVSFPNEGL 1072

Query: 754  NLTKYVANK-------------------NSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
            +L + +  +                   +S+   +Y+LYA+ NH+GG+G GHYTA  +  
Sbjct: 1073 DLDERIGERRITQSLHLTPEEAKHYGIEHSTEPFIYDLYAVDNHFGGLGGGHYTAFCRNK 1132

Query: 795  DENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            D+++WYN+DDS +S  + + V+S AAY+LFY+R
Sbjct: 1133 DDHQWYNYDDSRVSKASAEGVQSRAAYLLFYKR 1165


>gi|429863441|gb|ELA37892.1| ubiquitin carboxyl-terminal hydrolase [Colletotrichum gloeosporioides
            Nara gc5]
          Length = 1628

 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 70/157 (44%), Positives = 110/157 (70%), Gaps = 1/157 (0%)

Query: 672  TKKART-EPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLK 730
            T+ AR  + ++L  CL+ F + E L  +DMWYCP+CKE R+ASKK DLW+ P++L++HLK
Sbjct: 1234 TRMARKKQGITLEECLDEFEKAEVLSEQDMWYCPRCKEHRRASKKFDLWKTPDILIVHLK 1293

Query: 731  RFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAH 790
            RFS S   + KL+  V+FPI   +L K V  + + + ++Y+L A+ +H+GG+G GHYTA+
Sbjct: 1294 RFSSSGWRRDKLDVLVDFPIEGLDLHKRVLCQETGKEEIYDLIAVDDHFGGLGGGHYTAY 1353

Query: 791  IKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             +   + +WYN++D+ +S  + + V + AAY+LFYRR
Sbjct: 1354 GRNFVDGQWYNYNDTSVSKTSPESVITKAAYLLFYRR 1390



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/271 (32%), Positives = 122/271 (45%), Gaps = 60/271 (22%)

Query: 238 SRNHSSEISTSPNLASARDSDN----TLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQC 293
           SR  +S ++T     S R+S      T G +     G  +G  GL NLGNTC+MNSA+QC
Sbjct: 542 SRGSASSLTTQGKGTSGRNSPAPGPVTRGRTQQKKPGRGLGAVGLQNLGNTCYMNSALQC 601

Query: 294 LVHTPEFARYF-REDYRREINWQNPLG--------------------------------- 319
           +    E  +YF   +Y +EIN  N LG                                 
Sbjct: 602 VRSVEELTKYFLTGEYEKEINKANALGYKGQVAMAYGNLLKEIYAESRGAVSPRDFKNTV 661

Query: 320 --------------MVELLAFLLDGLHEDLNRVKHKPYIKSKDA------DGRPDEEVAD 359
                           E L FLLD L EDL+R+K KPYI+  D+      D     ++A+
Sbjct: 662 GRARSTFQGWGQQDTQEFLGFLLDALQEDLSRIKKKPYIEKPDSTDEMIGDEAAIRKMAE 721

Query: 360 EYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTV 419
           E W     R+DS++ D+  G YKSTL CPVC+K+S+TFDPF  L+LPL      + TV  
Sbjct: 722 EVWDITRKRDDSVVADLFTGLYKSTLKCPVCDKISITFDPFSNLTLPLPVEDMWSRTVKF 781

Query: 420 FTSDGSALPSTYTVTVPKHGRCRDLIQVLGN 450
              + +  P    V + KH     L + + +
Sbjct: 782 LPLNDA--PVQIEVELSKHSAIEGLKKAISD 810


>gi|320582331|gb|EFW96548.1| Ubiquitin carboxyl-terminal hydrolase [Ogataea parapolymorpha DL-1]
          Length = 1127

 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 73/173 (42%), Positives = 114/173 (65%), Gaps = 2/173 (1%)

Query: 655 NTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASK 714
           N   LEN  EV +N  +  ++R + +SL  C+E F   E L   D+WYCP CKE RQA+K
Sbjct: 811 NPEILENA-EVEENKRLMAESRRKNISLDNCMEMFSNPEVLGENDLWYCPNCKEHRQATK 869

Query: 715 KLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYA 774
           K+++W +P++L IHLKRF  ++S   K++  V FPI   +++KYV + ++    +Y+L+A
Sbjct: 870 KIEIWSVPDILTIHLKRFENTKSFSDKIDAVVEFPIEGLDMSKYVVD-STGEEMIYDLFA 928

Query: 775 LTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           + NH+GG+G GHYTA+ K   + +WY FDDS +S ++  +    +AY+LFYR+
Sbjct: 929 VDNHFGGLGGGHYTAYAKNFVDGKWYYFDDSRVSVVDPTESIRGSAYLLFYRK 981



 Score =  159 bits (403), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 122/387 (31%), Positives = 170/387 (43%), Gaps = 80/387 (20%)

Query: 236 GTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
           G+ R     IS    L   +  D T      +T     GL GL NLGNTC+MNSA+QCLV
Sbjct: 221 GSIRLEDLNISERNILIEIQQEDGTYPMDTSSTVTLGSGLVGLNNLGNTCYMNSALQCLV 280

Query: 296 HTPEFARYFREDY-RREINWQNPL-----------GMV---------------------- 321
           H PE   YF  DY  +EIN  NPL           G+V                      
Sbjct: 281 HIPELTNYFLYDYYEKEINRDNPLGNDGKVASAYAGLVKHLFDKRFAGPSSSFSPRDFKY 340

Query: 322 ------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVAD---- 359
                             EL+AFLLDGLHEDLNR+  KPY++  +    PD++V D    
Sbjct: 341 TIGYYNSMFADYHQQDSQELIAFLLDGLHEDLNRILKKPYVEKPEL---PDDKVNDLEEV 397

Query: 360 -----EYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRT 414
                + W +H  RN+S+++D+  G YKSTLVCP C K+S+TFDP+  L+LPL       
Sbjct: 398 RKLAQKCWDSHKLRNNSVVIDLFVGLYKSTLVCPSCGKISITFDPYNDLTLPLPVHKKWI 457

Query: 415 MTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFL 474
             V V   +G   P +  V +PK     DL   + +   +  +E L V   Q+   + F 
Sbjct: 458 GKVNVLLEEG--YPKSLEVELPKSATFADLKVYVADKVKVPINELLAVEVFQSQVYKNF- 514

Query: 475 DDPLISLSTIKDDD--HLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTS---QWKAYG 529
                     KD D  +L    +     +  F Q+ HR  +       T S     K +G
Sbjct: 515 --------EAKDSDTRYLPISDLIGQNDEIWFHQIKHRPGDLIVPVFNTLSDSRNTKPFG 566

Query: 530 TPLVSSISRDDVISSGKIQSTVQRMLS 556
            P   +++ D+  S GKI+  +++  S
Sbjct: 567 IPFFITVTEDECYSFGKIRRKLEQRYS 593


>gi|164429141|ref|XP_956165.2| hypothetical protein NCU00480 [Neurospora crassa OR74A]
 gi|157072425|gb|EAA26929.2| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 1754

 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 82/198 (41%), Positives = 121/198 (61%), Gaps = 15/198 (7%)

Query: 642  VYVDWSQKLLEKYNTHFLE-----NLLEVFKNGPVTKKARTEPL------SLYTCLEAFL 690
            + VDW +   + ++T F       N +E   +  +  K R   L      SL  CL  F 
Sbjct: 1299 IVVDWYE---DAFDTVFSPANRTYNKIETLNDPSLGAKKRQRELRKKHGISLDDCLAEFE 1355

Query: 691  REEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPI 750
            +EE L  +D WYCP+CKE R+ASKK DLW+ P++LV+HLKRFS     + KL+  V+FPI
Sbjct: 1356 KEEILSEQDTWYCPRCKEHRRASKKFDLWKTPDILVVHLKRFSSVGWRRDKLDVLVDFPI 1415

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPI 810
               +LT+ V +K   ++++Y+L A+ +H+GG+G GHYTA  K   +++WY F+DS +S +
Sbjct: 1416 EGLDLTERVIDKEDGKQEIYDLIAVDDHWGGLGGGHYTAFAKNFVDDQWYEFNDSSVSKV 1475

Query: 811  NE-DDVKSAAAYVLFYRR 827
             +   V S AAY+LFYRR
Sbjct: 1476 TDTSKVVSPAAYLLFYRR 1493



 Score =  135 bits (340), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 81/206 (39%), Positives = 105/206 (50%), Gaps = 55/206 (26%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPL---------- 318
           G + G  GL NLGNTC+MNSA+QCL    E  +YF   + ++EIN  NPL          
Sbjct: 672 GRTPGCVGLQNLGNTCYMNSALQCLRSVEELTKYFLTHEAKKEINPDNPLSHNGDVAMAY 731

Query: 319 ----------------------GMV----------------ELLAFLLDGLHEDLNRVKH 340
                                 G+V                E L FLLDGL EDLNR+K 
Sbjct: 732 MRLLDEIYKNPAPNSVAPRHFKGIVGRYAPAFSGYGQQDSQEFLGFLLDGLQEDLNRIKK 791

Query: 341 KPYIKSKDAD----GRPD--EEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVS 394
           KPYI+  D+     G P   +E+A++ W     R+DSII D+  G YKSTL CPVC+K+S
Sbjct: 792 KPYIEKPDSTDDMIGNPAAIKEMAEKVWDITKKRDDSIIADLFTGLYKSTLHCPVCDKIS 851

Query: 395 VTFDPFMYLSLPLQATTTRTMTVTVF 420
           +TFDPF  L+LPL  +   + TV  +
Sbjct: 852 ITFDPFNNLTLPLPMSNVWSRTVKYY 877


>gi|355754069|gb|EHH58034.1| hypothetical protein EGM_07801, partial [Macaca fascicularis]
          Length = 500

 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 105/274 (38%), Positives = 142/274 (51%), Gaps = 59/274 (21%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF---REDYRREINWQNPLGMV--------- 321
           G TGL NLGNTCFMNS+IQC+ +T    +YF   R  Y  E+N  NP+GM          
Sbjct: 149 GATGLSNLGNTCFMNSSIQCVSNTQPLTQYFISGRHLY--ELNRTNPIGMKGHMAKCYGD 206

Query: 322 --------------------------------------ELLAFLLDGLHEDLNRVKHKPY 343
                                                 ELLAFLLDGLHEDLNRV  KPY
Sbjct: 207 LVQELWSGTQKNVAPLKLRWTIAKYAPRFNGFQQQDSQELLAFLLDGLHEDLNRVHEKPY 266

Query: 344 IKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYL 403
           ++ KD+DGRPD EVA E + NH+ RN SI+VD+  GQ +S + C  C  +SV FDPF +L
Sbjct: 267 VELKDSDGRPDWEVAAEVY-NHLRRNRSIVVDLFHGQLRSQVKCKTCGHISVRFDPFNFL 325

Query: 404 SLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVA 463
           SLPL   +   + +TV   DG+  P  Y + +    +   L + L ++C L  SE++ +A
Sbjct: 326 SLPLPMDSYMHLEITVIKLDGTT-PVRYGLRLNMDEKYTGLKKQLSDLCGLN-SEQILLA 383

Query: 464 EIQNHSIQRF-LDDPLISLSTIKDDDHLAAYRVP 496
           E+   +I+ F  D+  + LS       L A+ +P
Sbjct: 384 EVHGSNIKNFPQDNQKVRLSV---SGFLCAFEIP 414


>gi|349604082|gb|AEP99732.1| Ubiquitin carboxyl-terminal hydrolase 4-like protein, partial
           [Equus caballus]
          Length = 431

 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 84/205 (40%), Positives = 127/205 (61%), Gaps = 5/205 (2%)

Query: 623 LSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSL 682
           L+ +G K +++ S ST   + +DW  +    Y         E   +    +K +   ++L
Sbjct: 190 LAADG-KLLKLNSRST---LAIDWDSETRSLYYDEQESEAYEKHVSMLQPQKKKKMAVAL 245

Query: 683 YTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKL 742
             C+E F   E L   D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+R  + KL
Sbjct: 246 RDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKL 305

Query: 743 ETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNF 802
           +T V FP+   N++++V +  S+R  +Y+L A++NHYG MG GHYTA+ K     +WY F
Sbjct: 306 DTVVEFPVRGLNMSEFVCDL-SARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYF 364

Query: 803 DDSHISPINEDDVKSAAAYVLFYRR 827
           DDS++S  +E+ + + AAYVLFY+R
Sbjct: 365 DDSNVSLASEEQIVTKAAYVLFYQR 389


>gi|170582208|ref|XP_001896026.1| Ubiquitin carboxyl-terminal hydrolase family protein [Brugia
           malayi]
 gi|158596854|gb|EDP35126.1| Ubiquitin carboxyl-terminal hydrolase family protein [Brugia
           malayi]
          Length = 968

 Score =  164 bits (414), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 102/292 (34%), Positives = 146/292 (50%), Gaps = 58/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDY-RREINWQNPLGMV----------- 321
           G TGL N+GNTCFMNS +Q LV+  E   YF   Y +R+IN  NPLG             
Sbjct: 268 GFTGLRNIGNTCFMNSTLQMLVNCKELQVYFSGGYYKRDINIMNPLGFGGRLAEVFAEFM 327

Query: 322 ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E L+F+LDGLHEDLNRV+ KP   
Sbjct: 328 KQMWNGMNRAYEPTKIKELVAEKATQFANFAQHDAHEFLSFVLDGLHEDLNRVRVKPTTN 387

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + +A+GRPD EV+ E W NH+ RNDSI VD+  GQ KS L CP CN++S+TFDPF YL++
Sbjct: 388 TIEAEGRPDIEVSREAWHNHLLRNDSIFVDLFHGQLKSRLQCPKCNQISITFDPFAYLAV 447

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
           P      R+ TV  +  D    P    V     G+  +++  L  + ++   + +++ E+
Sbjct: 448 PF-PKEKRSSTVYFWPLDPCLKPVRIIVRYNADGKISEVLDALSRLVNV-NPKSMRIIEV 505

Query: 466 QNHSIQRFLDDPLISLSTIKDDDHLAAYRV-------PKLVKKAVFLQLIHR 510
            NH I R   +P  S++ I   D +  ++V         +V+ AV  +L++R
Sbjct: 506 NNHRIVRVY-NPDDSVNNILTTDIIYVFQVHDPYDCNDDIVEFAVVQRLLYR 556



 Score = 99.4 bits (246), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 91/159 (57%), Gaps = 12/159 (7%)

Query: 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM-- 738
           SLY  L  F   E L PE+ WYC +CKE  +A+K+L L+RLP +L+I LKRF Y+ S+  
Sbjct: 794 SLYDMLAMFSETERLKPEESWYCSKCKEHVEATKQLVLYRLPPILIIQLKRFIYTTSLMT 853

Query: 739 ---KHKLETFVNFPIHDFNLTKYVANKNSSRRQL-YELYALTNHYGGMGSGHYTAHIKLL 794
              + K +  V +P+ + +L +++++   S ++  Y+L  +  H G    GHY +  +LL
Sbjct: 854 VHRRSKDDRPVRYPLDNLDLAQFLSDTAPSGQETKYDLTGVVCHSGSSYFGHYISLGRLL 913

Query: 795 D------ENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
                  E  W NFDDS ++      V++  AY+LFY++
Sbjct: 914 SIDGKTIEIDWRNFDDSIVTRAQLSRVQNDDAYLLFYKQ 952


>gi|145546913|ref|XP_001459139.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124426962|emb|CAK91742.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1025

 Score =  164 bits (414), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 87/197 (44%), Positives = 104/197 (52%), Gaps = 48/197 (24%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGM------------ 320
           G+ GL NLGNTCFMNS  QCL +T     YF    Y  EIN  NPLG             
Sbjct: 371 GIAGLSNLGNTCFMNSGTQCLSNTYPLKEYFISNKYFEEINEDNPLGTNGQLVRKFGSLL 430

Query: 321 -----------------------------------VELLAFLLDGLHEDLNRVKHKPYIK 345
                                               EL+ FLLDGLHEDLNRVK KPY++
Sbjct: 431 KKLWCGDKNVVIPTSFKKAVGQFQPMFKGFQQHDSSELITFLLDGLHEDLNRVKKKPYVE 490

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           SKD  GRPD EVA E W NH+ARN SIIVD+  GQYKSTL CP C ++S+TFDPF+ + L
Sbjct: 491 SKDYQGRPDVEVAKESWENHLARNQSIIVDLMHGQYKSTLKCPTCQQISITFDPFLTVGL 550

Query: 406 PLQATTTRTMTVTVFTS 422
            +     +++ + V  S
Sbjct: 551 GIPNKKQKSIQIKVIKS 567



 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 72/162 (44%), Positives = 103/162 (63%), Gaps = 11/162 (6%)

Query: 677  TEP-LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYS 735
            T+P +SL  CL    + E L  ++ WYC  CKE  QA K + +++  ++L+  LKRF  S
Sbjct: 847  TQPKVSLQDCLRFSEQPEQLAEDNAWYCKVCKEHVQAYKSMQIYKASDILIFTLKRFKAS 906

Query: 736  RSM-KHKLETFVNFPIHDFNLTKYVANKNS---------SRRQLYELYALTNHYGGMGSG 785
                K KLETFV FP+   +LT+++ NKN           ++ +Y+LYA++NH+GGMG G
Sbjct: 907  HGFFKQKLETFVEFPVQGLDLTEFILNKNKPNENQIQEEQKKLIYDLYAVSNHFGGMGGG 966

Query: 786  HYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            HYTA+ K  +  +WY+FDDS  S INED + S +AYVLFY+R
Sbjct: 967  HYTAYAKNHENGKWYDFDDSQASEINEDQIVSQSAYVLFYKR 1008


>gi|336470026|gb|EGO58188.1| hypothetical protein NEUTE1DRAFT_122471 [Neurospora tetrasperma FGSC
            2508]
          Length = 1744

 Score =  164 bits (414), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 72/149 (48%), Positives = 104/149 (69%), Gaps = 1/149 (0%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            +SL  CL  F +EE L  +D WYCP+CKE R+ASKK DLW+ P++LV+HLKRFS     +
Sbjct: 1335 ISLDDCLAEFEKEEILSEQDTWYCPRCKEHRRASKKFDLWKTPDILVVHLKRFSSVGWRR 1394

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRW 799
             KL+  V+FPI   +LT+ V +K   ++++Y+L A+ +H+GG+G GHYTA  K   +++W
Sbjct: 1395 DKLDVLVDFPIEGLDLTERVIDKEDGKQEIYDLIAVDDHWGGLGGGHYTAFAKNFVDDQW 1454

Query: 800  YNFDDSHISPINE-DDVKSAAAYVLFYRR 827
            Y F+DS +S + +   V S AAY+LFYRR
Sbjct: 1455 YEFNDSSVSKVTDTSKVVSPAAYLLFYRR 1483



 Score =  135 bits (341), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 81/206 (39%), Positives = 105/206 (50%), Gaps = 55/206 (26%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPL---------- 318
           G + G  GL NLGNTC+MNSA+QCL    E  +YF   + ++EIN  NPL          
Sbjct: 662 GRTPGCVGLQNLGNTCYMNSALQCLRSVEELTKYFLTHEAKKEINPDNPLSHNGDVAMAY 721

Query: 319 ----------------------GMV----------------ELLAFLLDGLHEDLNRVKH 340
                                 G+V                E L FLLDGL EDLNR+K 
Sbjct: 722 MRLLDEIYKNPAPNSVAPRHFKGIVGRYAPAFSGYGQQDSQEFLGFLLDGLQEDLNRIKK 781

Query: 341 KPYIKSKDAD----GRPD--EEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVS 394
           KPYI+  D+     G P   +E+A++ W     R+DSII D+  G YKSTL CPVC+K+S
Sbjct: 782 KPYIEKPDSTDDMIGNPAAIKEMAEKVWDITKKRDDSIIADLFTGLYKSTLHCPVCDKIS 841

Query: 395 VTFDPFMYLSLPLQATTTRTMTVTVF 420
           +TFDPF  L+LPL  +   + TV  +
Sbjct: 842 ITFDPFNNLTLPLPMSNVWSRTVKYY 867


>gi|380094149|emb|CCC08366.1| unnamed protein product [Sordaria macrospora k-hell]
          Length = 1414

 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 82/198 (41%), Positives = 121/198 (61%), Gaps = 15/198 (7%)

Query: 642  VYVDWSQKLLEKYNTHFLE-----NLLEVFKNGPVTKKARTEPL------SLYTCLEAFL 690
            + VDW +   + ++T F       N +E   +  +  K R   L      SL  CL  F 
Sbjct: 959  IVVDWYE---DAFDTVFSPANRTYNKIEALNDPSLGAKKRQRELRKKNGISLDDCLAEFE 1015

Query: 691  REEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPI 750
            +EE L  +D WYCP+CKE R+ASKK DLW+ P++LV+HLKRFS     + KL+  V+FPI
Sbjct: 1016 KEEILSEQDTWYCPRCKEHRRASKKFDLWKTPDILVVHLKRFSSVGWRRDKLDVLVDFPI 1075

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPI 810
               +LT+ V +K   ++++Y+L A+ +H+GG+G GHYTA  K   +++WY F+DS +S +
Sbjct: 1076 EGLDLTERVIDKEDGKQEIYDLIAVDDHWGGLGGGHYTAFAKNFLDDQWYEFNDSSVSKV 1135

Query: 811  NE-DDVKSAAAYVLFYRR 827
             +   V S AAY+LFYRR
Sbjct: 1136 TDTSKVVSPAAYLLFYRR 1153



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/235 (37%), Positives = 117/235 (49%), Gaps = 59/235 (25%)

Query: 245 ISTSPNLASARDS---DNTLGSSGVTTR-GASVGLTGLLNLGNTCFMNSAIQCLVHTPEF 300
           ++ +   AS R+S    + L    V  R G + G  GL NLGNTC+MNSA+QCL    E 
Sbjct: 305 VAQARGAASGRNSPAPQSVLNRGRVQPRSGRTPGCVGLQNLGNTCYMNSALQCLRSVEEL 364

Query: 301 ARYF-REDYRREINWQNPL---GMV----------------------------------- 321
            +YF   + ++EIN +NPL   G V                                   
Sbjct: 365 TKYFLTHEAKKEINAENPLSHNGDVALAYMRLLDEIYKNPAPNSVAPRHFKSIVGRYASA 424

Query: 322 ----------ELLAFLLDGLHEDLNRVKHKPYIKSKDAD----GRPD--EEVADEYWANH 365
                     E L FLLDGL EDLNR+K KPYI+  D+     G P   +E+AD+ W   
Sbjct: 425 FSGYGQQDSQEFLGFLLDGLQEDLNRIKKKPYIEKPDSTDDMIGNPAAIKEMADKVWDIT 484

Query: 366 IARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVF 420
             R+DSII D+  G YKSTL CPVC+K+S+TFDPF  L+LPL  +   + TV  +
Sbjct: 485 KKRDDSIIADLFTGMYKSTLHCPVCDKISITFDPFNNLTLPLPMSNVWSRTVKYY 539


>gi|270008551|gb|EFA04999.1| hypothetical protein TcasGA2_TC015078 [Tribolium castaneum]
          Length = 1682

 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 155/515 (30%), Positives = 224/515 (43%), Gaps = 77/515 (14%)

Query: 38   PSGIDNSDLVNDA-----TAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTL 92
            P  IDNS+LV +      T    G   +    L++ RD+ L+P  +W  L  WYGG   L
Sbjct: 511  PGPIDNSNLVAEPLHKVRTLTGEGGRLKRDTPLVQHRDFELVPDSLWKALAHWYGGPLPL 570

Query: 93   ARKVISSGLSQTELAVEVYPLRLQLLVMPRGECSTIRISKKETIGELHRRACSIFYLNLE 152
             R+VI    S  ++ +E+YPL L +  M + +      S    +G     A     LN  
Sbjct: 571  PRQVILPPGS-CDVELELYPLNLSIW-MHQSQAVGSAASWSSVVGGYGAAA-----LNTA 623

Query: 153  QICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKK 212
             I        R++         L  AN++   + L   L           ++D      +
Sbjct: 624  GITTSPISSPRRYLAHTAAFSRL--ANVRQVIEFLCLRLS--------LRVEDVRLWHIR 673

Query: 213  ASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLAS-ARDSDNTLGSSGVTTRGA 271
             ++ L+E   ++L         K      + +++    L +       TL +    T   
Sbjct: 674  DTTTLLEDENATLQDLSVIDGDKILLEVRNKDLTWPEELGALVAGGQTTLSAERRPTICL 733

Query: 272  SVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDYRR-EINWQNPLG---MV------ 321
              G TGL NLGNTCFMN+A+Q + +T     YF+ D +  E+N  NPLG   MV      
Sbjct: 734  PPGATGLHNLGNTCFMNAALQAVSNTRPLTLYFQRDGQLCELNSVNPLGTKGMVARRYAE 793

Query: 322  --------------------------------------ELLAFLLDGLHEDLNRVKHKPY 343
                                                  ELLA+LLD LHEDLNRV  K Y
Sbjct: 794  LCRELWAGSTRSVAPLKLRYCVTKHAPHLGGGGQHDSQELLAWLLDALHEDLNRVARKQY 853

Query: 344  IKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYL 403
             + KD+ GRPDE VA+E W  H+AR+ SII D+  GQ KS + C  C   SV FDPF  L
Sbjct: 854  SELKDSGGRPDEVVAEEAWVQHLARDHSIITDLFYGQLKSKVTCQTCGHESVRFDPFNLL 913

Query: 404  SLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVA 463
            SLPL   +     V V   +G   P  Y + +    +  +L Q L  +C++K +E L +A
Sbjct: 914  SLPLPMESYTLCEVLVVRLNGET-PIKYGLRLNSEAKYIELKQQLERLCNIK-TERLLLA 971

Query: 464  EIQNHSIQRFL-DDPLISLSTIKDDDHLAAYRVPK 497
            E+    I++ L DD  I+  T  +   L AY +P+
Sbjct: 972  ELAYSQIRQVLNDDVRINPGTATE---LYAYELPE 1003



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 114/265 (43%), Gaps = 28/265 (10%)

Query: 504  FLQLIHR--LQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISS--GKIQSTVQRMLSPFL 559
            +L  +HR  ++++    +Q  S+   +G+PL+     +    S    +   V R LSP  
Sbjct: 1086 YLIALHRKCVRQETYFLSQQKSKPSLFGSPLLLGFRPNSTCQSLYEAVWGQVTRFLSPLP 1145

Query: 560  KKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNV 619
            + +   HA   D S                   +  E   + KAV        +   +  
Sbjct: 1146 QSDQTNHATDCDDS-------------------LGYEFPFTLKAVLQGGQICAICHWTQF 1186

Query: 620  CFDLSVEGDKTIRIPSSS---TSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKAR 676
            C   ++     + +         + + +DW    L        E L    ++    +K  
Sbjct: 1187 CRGCTLPCSNDLVVDHCRGNLNGMCIAIDWDPTALHLRYQSNREKLWIEDESVSRCQKLH 1246

Query: 677  TEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSR 736
            TEP+ L  CL+AF  EE L  E  ++C  C++++ A+KKL +WRLP +L+IHLKRF    
Sbjct: 1247 TEPIDLDNCLKAFTSEERL--ETKYHCSNCQDKQPATKKLQIWRLPPILIIHLKRFDCVN 1304

Query: 737  SMKHKLETFVNFPIHDFNLTKYVAN 761
            +   K +  VNFP  DF+ T Y+A+
Sbjct: 1305 NKWVKTQKVVNFPFKDFDPTAYLAS 1329


>gi|336268250|ref|XP_003348890.1| hypothetical protein SMAC_01914 [Sordaria macrospora k-hell]
          Length = 1413

 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 82/198 (41%), Positives = 121/198 (61%), Gaps = 15/198 (7%)

Query: 642  VYVDWSQKLLEKYNTHFLE-----NLLEVFKNGPVTKKARTEPL------SLYTCLEAFL 690
            + VDW +   + ++T F       N +E   +  +  K R   L      SL  CL  F 
Sbjct: 958  IVVDWYE---DAFDTVFSPANRTYNKIEALNDPSLGAKKRQRELRKKNGISLDDCLAEFE 1014

Query: 691  REEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPI 750
            +EE L  +D WYCP+CKE R+ASKK DLW+ P++LV+HLKRFS     + KL+  V+FPI
Sbjct: 1015 KEEILSEQDTWYCPRCKEHRRASKKFDLWKTPDILVVHLKRFSSVGWRRDKLDVLVDFPI 1074

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPI 810
               +LT+ V +K   ++++Y+L A+ +H+GG+G GHYTA  K   +++WY F+DS +S +
Sbjct: 1075 EGLDLTERVIDKEDGKQEIYDLIAVDDHWGGLGGGHYTAFAKNFLDDQWYEFNDSSVSKV 1134

Query: 811  NE-DDVKSAAAYVLFYRR 827
             +   V S AAY+LFYRR
Sbjct: 1135 TDTSKVVSPAAYLLFYRR 1152



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/235 (37%), Positives = 117/235 (49%), Gaps = 59/235 (25%)

Query: 245 ISTSPNLASARDS---DNTLGSSGVTTR-GASVGLTGLLNLGNTCFMNSAIQCLVHTPEF 300
           ++ +   AS R+S    + L    V  R G + G  GL NLGNTC+MNSA+QCL    E 
Sbjct: 304 VAQARGAASGRNSPAPQSVLNRGRVQPRSGRTPGCVGLQNLGNTCYMNSALQCLRSVEEL 363

Query: 301 ARYF-REDYRREINWQNPL---GMV----------------------------------- 321
            +YF   + ++EIN +NPL   G V                                   
Sbjct: 364 TKYFLTHEAKKEINAENPLSHNGDVALAYMRLLDEIYKNPAPNSVAPRHFKSIVGRYASA 423

Query: 322 ----------ELLAFLLDGLHEDLNRVKHKPYIKSKDAD----GRPD--EEVADEYWANH 365
                     E L FLLDGL EDLNR+K KPYI+  D+     G P   +E+AD+ W   
Sbjct: 424 FSGYGQQDSQEFLGFLLDGLQEDLNRIKKKPYIEKPDSTDDMIGNPAAIKEMADKVWDIT 483

Query: 366 IARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVF 420
             R+DSII D+  G YKSTL CPVC+K+S+TFDPF  L+LPL  +   + TV  +
Sbjct: 484 KKRDDSIIADLFTGMYKSTLHCPVCDKISITFDPFNNLTLPLPMSNVWSRTVKYY 538


>gi|320588013|gb|EFX00488.1| ubiquitin c-terminal hydrolase [Grosmannia clavigera kw1407]
          Length = 1698

 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 73/153 (47%), Positives = 108/153 (70%), Gaps = 1/153 (0%)

Query: 676  RTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYS 735
            R   L+L  CL+ F REE L   D WYCP+CKE R+ASKK DLW+ P+VLV+HLKRFS S
Sbjct: 1290 RKHGLTLDECLDEFEREEILSENDTWYCPRCKEHRRASKKFDLWKTPDVLVVHLKRFSSS 1349

Query: 736  RSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLD 795
               + KL+T V+FP+   +LTK V ++ + +++ Y+L  + +H+GG+G GHYTA  +   
Sbjct: 1350 GWRRDKLDTRVDFPVVGLDLTKRVLDRQTGKQETYDLIGVDDHWGGLGGGHYTAFARNFI 1409

Query: 796  ENRWYNFDDSHISPINEDD-VKSAAAYVLFYRR 827
            + +WY ++DS +S +++ + V SA+AY+LFYRR
Sbjct: 1410 DGQWYEYNDSSVSKVSDPNRVVSASAYLLFYRR 1442



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/218 (37%), Positives = 103/218 (47%), Gaps = 62/218 (28%)

Query: 252 ASARDSDNTLGSSGVTTRGAS-------VGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF 304
           ++A    N+    G  TRG +       +G  GL NLGNTC+MNSA+QC+    E  +YF
Sbjct: 540 SAASSGRNSPNQQGAFTRGRAKQKSGRVMGCVGLSNLGNTCYMNSALQCVRSVEELTKYF 599

Query: 305 R-EDYRREINWQNPLG-------------------------------------------- 319
              +   EIN  NPLG                                            
Sbjct: 600 LVHESDVEINQVNPLGHGGNVAKAYSYLLDEIYKDNAPSSISPRGFKSTIGRYAPAFSGY 659

Query: 320 ----MVELLAFLLDGLHEDLNRVKHKPYIKSKDAD----GRPD--EEVADEYWANHIARN 369
                 E L FLLDGL EDL+RVK KPYI   D+     G P    E+A++ W     R+
Sbjct: 660 GQQDSQEFLGFLLDGLQEDLSRVKKKPYIAKPDSTDEMIGNPAAIREMAEQVWDITKKRD 719

Query: 370 DSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPL 407
           DS+I D+  G YKSTL+CPVC KVS+TFDPF  L+LPL
Sbjct: 720 DSVIADLFTGMYKSTLICPVCQKVSITFDPFTNLTLPL 757


>gi|145516118|ref|XP_001443953.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124411353|emb|CAK76556.1| unnamed protein product [Paramecium tetraurelia]
          Length = 992

 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 140/495 (28%), Positives = 208/495 (42%), Gaps = 113/495 (22%)

Query: 65  LLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTEL------AVEVYPLRLQLL 118
           L E  DY+++ +E+W    S+Y     +     S    Q  +       V +YP  ++ +
Sbjct: 113 LQENVDYVVIDKEIWEFFTSYYSNTAIIRSSNGSGKDKQVAVNLLRIKCVLLYPSIIKQI 172

Query: 119 VMPRGECSTI--------RISKKETIGELHRRACSIFYLNLEQ---ICIWDYYGHRK--- 164
              R +  T         R  K +    L +R    F  N  +   + IW Y   +K   
Sbjct: 173 SQDRMQRQTFDSEVLQVDRNMKFKDYQNLIQRTVHTFSGNFAKDNNVRIWRYVTDQKDAY 232

Query: 165 HALMNDMDRTLDDANIQMDQ--DILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSK 222
            AL ND+++ + +   Q D   D   E+L +        +I+D G  +        +   
Sbjct: 233 KALFNDINKQVGELESQDDMCFDFNGELLTHQQY----DTIEDIGIIDTNLIVFEFKDDY 288

Query: 223 SSLSIAGGWSASKGTSRN-HSSEISTSP------------------NLASAR----DSDN 259
               I       +G   N H  ++ + P                  N  SAR     SD+
Sbjct: 289 KPWCIRNQAVQIEGKCENCHVFKVLSFPCICRKVSYCKEECRQKDYNYHSARCEKHGSDD 348

Query: 260 TLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPL 318
               S   ++ ++ G+ GL NLGNTCFMNS  QC+ ++     YF ++ Y  EIN  NPL
Sbjct: 349 ESVKSLTLSQTSAKGIVGLSNLGNTCFMNSGTQCISNSYPLVEYFLKNLYFDEINMDNPL 408

Query: 319 GM-----------------------------------------------VELLAFLLDGL 331
           G                                                 EL+ F+LDG+
Sbjct: 409 GTQGQLVKKVGSLIKKMWCGDRQTITPTNYKKAVGQFQPMFKGFHQHDSSELITFVLDGI 468

Query: 332 HEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCN 391
           HEDLNRVK KPY+++KD DGR D  VA E W NH+ARN S+IVD+  GQYKSTL CP C 
Sbjct: 469 HEDLNRVKKKPYVETKDYDGRSDFVVAKESWLNHLARNQSVIVDLMHGQYKSTLKCPTCQ 528

Query: 392 KVSVTFDPFMYLSLPLQATTTRTMTVT----VFTSDGSALPSTYTVTVPKHGRCRDLIQV 447
           + S+TFDP++ + L + +   RT+       +F      LP     ++P     +D +++
Sbjct: 529 QFSITFDPYLMVQLGIPSQKKRTIQFKFYKDLFQYQFINLPFDKNKSIP----LKDYLKI 584

Query: 448 LGNICSLKQSEELKV 462
           LG        EELKV
Sbjct: 585 LG--------EELKV 591



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 98/163 (60%), Gaps = 17/163 (10%)

Query: 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYS-RSMK 739
           +L  CL+     E L  E+ WYC  CKE  QA K + +++ P++L+  LKRF  S R  K
Sbjct: 811 TLQDCLQFSQMPEQLNAENTWYCKVCKEHVQAFKSMQIYKAPQILIFTLKRFKASNRLFK 870

Query: 740 HKLETFVNFPIHDFNLTKYVANKNS----------------SRRQLYELYALTNHYGGMG 783
            KLET V+FPI++ ++T ++ N  +                 ++ +Y+LYA++NH+GG+G
Sbjct: 871 QKLETLVDFPINNLDMTDFIINSKTPLEYENENETNNGENNKQKVIYDLYAVSNHFGGLG 930

Query: 784 SGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYR 826
            GHYTA  K    N+WYNFDDS +S I+E  + S +AYVL Y+
Sbjct: 931 GGHYTALAKNKFTNKWYNFDDSMVSEISESSIVSKSAYVLCYQ 973


>gi|119614762|gb|EAW94356.1| ubiquitin specific peptidase 32, isoform CRA_a [Homo sapiens]
          Length = 982

 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 105/274 (38%), Positives = 142/274 (51%), Gaps = 59/274 (21%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF---REDYRREINWQNPLGMV--------- 321
           G TGL NLGNTCFMNS+IQC+ +T    +YF   R  Y  E+N  NP+GM          
Sbjct: 111 GATGLSNLGNTCFMNSSIQCVSNTQPLTQYFISGRHLY--ELNRTNPIGMKGHMAKCYGD 168

Query: 322 --------------------------------------ELLAFLLDGLHEDLNRVKHKPY 343
                                                 ELLAFLLDGLHEDLNRV  KPY
Sbjct: 169 LVQELWSGTQKNVAPLKLRWTIAKYAPRFNGFQQQDAQELLAFLLDGLHEDLNRVHEKPY 228

Query: 344 IKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYL 403
           ++ KD+DGRPD EVA E + NH+ RN SI+VD+  GQ +S + C  C  +SV FDPF +L
Sbjct: 229 VELKDSDGRPDWEVAAEVY-NHLRRNRSIVVDLFHGQLRSQVKCKTCGHISVRFDPFNFL 287

Query: 404 SLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVA 463
           SLPL   +   + +TV   DG+  P  Y + +    +   L + L ++C L  SE++ +A
Sbjct: 288 SLPLPMDSYMHLEITVIKLDGTT-PVRYGLRLNMDEKYTGLKKQLSDLCGL-NSEQILLA 345

Query: 464 EIQNHSIQRF-LDDPLISLSTIKDDDHLAAYRVP 496
           E+   +I+ F  D+  + LS       L A+ +P
Sbjct: 346 EVHGSNIKNFPQDNQKVRLSV---SGFLCAFEIP 376



 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 74/125 (59%), Gaps = 2/125 (1%)

Query: 642 VYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
           + VDW    L  +Y T   E +++  ++   +++A+ EP++L +CL AF  EE L   +M
Sbjct: 573 IAVDWDPTALHLRYQTS-QERVVDEHESVEQSRRAQAEPINLDSCLRAFTSEEELGENEM 631

Query: 701 WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
           +YC +CK    A+KKLDLWRLP +L+IHLKRF +      K +  V FP   F+ + ++ 
Sbjct: 632 YYCSKCKTHCLATKKLDLWRLPPILIIHLKRFQFVNGRWIKSQKIVKFPRESFDPSAFLV 691

Query: 761 NKNSS 765
            ++ +
Sbjct: 692 PRDPA 696



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 39/61 (63%), Gaps = 1/61 (1%)

Query: 767 RQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYR 826
           + +Y LYA++ H G +G GHY  + K  +  +WY ++DS    ++ D++ + +AY+LFY 
Sbjct: 885 KPIYNLYAISCHSGILGGGHYVTYAKNPN-CKWYCYNDSSCKELHPDEIDTDSAYILFYE 943

Query: 827 R 827
           +
Sbjct: 944 Q 944


>gi|380471969|emb|CCF47017.1| ubiquitin carboxyl-terminal hydrolase, partial [Colletotrichum
            higginsianum]
          Length = 1676

 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 69/157 (43%), Positives = 111/157 (70%), Gaps = 1/157 (0%)

Query: 672  TKKART-EPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLK 730
            +++AR  + ++L  CL+ F + E L  +DMWYCP+CKE R+ASKK DLW+ P++LV+HLK
Sbjct: 1273 SRQARKKQGITLEECLDEFEKAEVLSEQDMWYCPRCKEHRRASKKFDLWKTPDILVVHLK 1332

Query: 731  RFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAH 790
            RFS +   + KL+  V+FPI   +L K V  + + + ++Y+L A+ +H+GG+G GHYTA+
Sbjct: 1333 RFSSAGWRRDKLDILVDFPIEGLDLHKRVLCQETGKEEIYDLIAVDDHFGGLGGGHYTAY 1392

Query: 791  IKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             +   + +WYN++D+ +S  + + V + AAY+LFYRR
Sbjct: 1393 GRNFVDGQWYNYNDTSVSKTSPESVVTRAAYLLFYRR 1429



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/205 (36%), Positives = 99/205 (48%), Gaps = 54/205 (26%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLG--------- 319
           G  +G  GL NLGNTC+MNSA+QC+    E  +YF  D Y+ E+N  NPLG         
Sbjct: 618 GRGLGAVGLQNLGNTCYMNSALQCVRSVEELTKYFLTDEYKVELNKANPLGYKGQVAMAY 677

Query: 320 --------------------------------------MVELLAFLLDGLHEDLNRVKHK 341
                                                   E L FLLD L EDL+R+K K
Sbjct: 678 GGLLKEIYAESRGAVSPRDFKNTVGRARSTFQGWGQQDTQEFLGFLLDALQEDLSRIKKK 737

Query: 342 PYIKSKDADGR--PDEE----VADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSV 395
           PYI+  D+      +EE    +A+E W     R+DS++ D+  G YKSTL CP C+K+S+
Sbjct: 738 PYIEKPDSTDEMIGNEEAIRKMAEEVWDITRKRDDSVVADLFTGLYKSTLKCPTCDKISI 797

Query: 396 TFDPFMYLSLPLQATTTRTMTVTVF 420
           TFDPF  L+LPL      + TV  +
Sbjct: 798 TFDPFNNLTLPLPMEDMWSRTVKFY 822


>gi|189238385|ref|XP_001811202.1| PREDICTED: similar to ubiquitin specific protease [Tribolium
            castaneum]
          Length = 1533

 Score =  163 bits (412), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 155/515 (30%), Positives = 224/515 (43%), Gaps = 77/515 (14%)

Query: 38   PSGIDNSDLVNDA-----TAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTL 92
            P  IDNS+LV +      T    G   +    L++ RD+ L+P  +W  L  WYGG   L
Sbjct: 511  PGPIDNSNLVAEPLHKVRTLTGEGGRLKRDTPLVQHRDFELVPDSLWKALAHWYGGPLPL 570

Query: 93   ARKVISSGLSQTELAVEVYPLRLQLLVMPRGECSTIRISKKETIGELHRRACSIFYLNLE 152
             R+VI    S  ++ +E+YPL L +  M + +      S    +G     A     LN  
Sbjct: 571  PRQVILPPGS-CDVELELYPLNLSIW-MHQSQAVGSAASWSSVVGGYGAAA-----LNTA 623

Query: 153  QICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKK 212
             I        R++         L  AN++   + L   L           ++D      +
Sbjct: 624  GITTSPISSPRRYLAHTAAFSRL--ANVRQVIEFLCLRL--------SLRVEDVRLWHIR 673

Query: 213  ASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLAS-ARDSDNTLGSSGVTTRGA 271
             ++ L+E   ++L         K      + +++    L +       TL +    T   
Sbjct: 674  DTTTLLEDENATLQDLSVIDGDKILLEVRNKDLTWPEELGALVAGGQTTLSAERRPTICL 733

Query: 272  SVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDYRR-EINWQNPLG---MV------ 321
              G TGL NLGNTCFMN+A+Q + +T     YF+ D +  E+N  NPLG   MV      
Sbjct: 734  PPGATGLHNLGNTCFMNAALQAVSNTRPLTLYFQRDGQLCELNSVNPLGTKGMVARRYAE 793

Query: 322  --------------------------------------ELLAFLLDGLHEDLNRVKHKPY 343
                                                  ELLA+LLD LHEDLNRV  K Y
Sbjct: 794  LCRELWAGSTRSVAPLKLRYCVTKHAPHLGGGGQHDSQELLAWLLDALHEDLNRVARKQY 853

Query: 344  IKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYL 403
             + KD+ GRPDE VA+E W  H+AR+ SII D+  GQ KS + C  C   SV FDPF  L
Sbjct: 854  SELKDSGGRPDEVVAEEAWVQHLARDHSIITDLFYGQLKSKVTCQTCGHESVRFDPFNLL 913

Query: 404  SLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVA 463
            SLPL   +     V V   +G   P  Y + +    +  +L Q L  +C++K +E L +A
Sbjct: 914  SLPLPMESYTLCEVLVVRLNGET-PIKYGLRLNSEAKYIELKQQLERLCNIK-TERLLLA 971

Query: 464  EIQNHSIQRFL-DDPLISLSTIKDDDHLAAYRVPK 497
            E+    I++ L DD  I+  T  +   L AY +P+
Sbjct: 972  ELAYSQIRQVLNDDVRINPGTATE---LYAYELPE 1003



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 114/265 (43%), Gaps = 28/265 (10%)

Query: 504  FLQLIHR--LQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISS--GKIQSTVQRMLSPFL 559
            +L  +HR  ++++    +Q  S+   +G+PL+     +    S    +   V R LSP  
Sbjct: 1094 YLIALHRKCVRQETYFLSQQKSKPSLFGSPLLLGFRPNSTCQSLYEAVWGQVTRFLSPLP 1153

Query: 560  KKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNV 619
            + +   HA   D S                   +  E   + KAV        +   +  
Sbjct: 1154 QSDQTNHATDCDDS-------------------LGYEFPFTLKAVLQGGQICAICHWTQF 1194

Query: 620  CFDLSVEGDKTIRIPSSS---TSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKAR 676
            C   ++     + +         + + +DW    L        E L    ++    +K  
Sbjct: 1195 CRGCTLPCSNDLVVDHCRGNLNGMCIAIDWDPTALHLRYQSNREKLWIEDESVSRCQKLH 1254

Query: 677  TEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSR 736
            TEP+ L  CL+AF  EE L  E  ++C  C++++ A+KKL +WRLP +L+IHLKRF    
Sbjct: 1255 TEPIDLDNCLKAFTSEERL--ETKYHCSNCQDKQPATKKLQIWRLPPILIIHLKRFDCVN 1312

Query: 737  SMKHKLETFVNFPIHDFNLTKYVAN 761
            +   K +  VNFP  DF+ T Y+A+
Sbjct: 1313 NKWVKTQKVVNFPFKDFDPTAYLAS 1337



 Score = 45.8 bits (107), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 770  YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPI-NEDDVKSAAAYVLFYRR 827
            Y+LYA+ +H G +  GHY ++    + N WY ++DS    +  E  + +++AY+LFY R
Sbjct: 1437 YQLYAVVSHSGMLNGGHYISYACNPNGN-WYCYNDSSCREVLTEPKIDTSSAYILFYER 1494


>gi|297271916|ref|XP_002800319.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 43-like [Macaca
           mulatta]
          Length = 1081

 Score =  163 bits (412), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 154/649 (23%), Positives = 257/649 (39%), Gaps = 175/649 (26%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLV-------------------------------------- 295
           G  GL N GNTCFMN+ +QCL                                       
Sbjct: 99  GAQGLKNHGNTCFMNAVVQCLSNTDLLAEFLALGRYRAAPGRAEVTEQLAALVRALWTRE 158

Query: 296 HTPEFARYFR---EDYRREINWQNPLGMVELLAFLLDGLHEDLNRVKHKPYIKSKDADGR 352
           +TP+ +  F+     Y  +    +    +E L +LLD +HEDL      P ++    +  
Sbjct: 159 YTPQLSAEFKNAVSKYGSQFQGNSQHDALEFLLWLLDRVHEDLEGSSRGPVLEKLPPEAN 218

Query: 353 PDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTT 412
              E      A  +   +S +    Q QY+S+L CP C K S TFDPF+ +SLP+    T
Sbjct: 219 KTSENCLSPSA-QLPLGESFVQSHFQAQYRSSLTCPHCLKQSNTFDPFLCVSLPIPLRQT 277

Query: 413 RTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR 472
           R ++V       +A P                               + + E+     QR
Sbjct: 278 RYVSV-------AACP-------------------------------VILVELYPSGFQR 299

Query: 473 -FLDDPLISLSTIKDDDHLAAYRVPK------LVKKAVFLQLIHRLQEQEP--------- 516
            F D+    L+TI + D++ A++VP       L    + L +  RL  +E          
Sbjct: 300 SFFDE--EDLNTIAEGDNVYAFQVPPSPSQGTLSAHPLALSVSPRLAAREGQRFSLSLHS 357

Query: 517 ------------GAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESL 564
                       G+ Q  S+   +G P +  I  D  +S  ++Q ++   +   +K E+ 
Sbjct: 358 ESKVLILFCNLVGSGQQASR---FGPPFL--IREDRAVSWAQLQQSILSKVRHLMKSEAP 412

Query: 565 MHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLS 624
           +                      N  S  +      S A +     L   D   +C   +
Sbjct: 413 VQ---------------------NLGSLFSIRVVGLSVACSY----LSPKDSRPLCH-WA 446

Query: 625 VEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLE----VFKNGPVTKKARTEPL 680
           V+    +R P     + + V+W   + E+   +  E   +    V++     +  +    
Sbjct: 447 VDRALHLRRPGGPPHVKLAVEWDSSVKERLFGNLQEERAQDADSVWQQ---QQAHQQHSC 503

Query: 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKH 740
           +L  C + + +EE L  +D W CP C+  +Q   KL LW LP++L+IHLKRF      ++
Sbjct: 504 TLDECFQFYTKEEQLAQDDAWKCPHCQVLQQGMVKLSLWTLPDILIIHLKRFCQVGERRN 563

Query: 741 KLETFVNFPIHDFNLTKYVANKNSSRRQ----------------------LYELYALTNH 778
           KL T V FP+   N+  +VA +++S                         LY+LYA+ NH
Sbjct: 564 KLSTLVKFPLSGLNMAPHVAQRSTSPEAGLGPWPSWKPPGCLPTSCPLDFLYDLYAVCNH 623

Query: 779 YGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           +G +      A+ +   + +WY++DDS + P+ ED+V +  AY+LFY++
Sbjct: 624 HGNL-----QAYCRNSLDGQWYSYDDSTVEPLREDEVNTRGAYILFYQK 667


>gi|402591058|gb|EJW84988.1| ubiquitin carboxyl-terminal hydrolase, partial [Wuchereria
           bancrofti]
          Length = 963

 Score =  163 bits (412), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 102/292 (34%), Positives = 146/292 (50%), Gaps = 58/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDY-RREINWQNPLGMV----------- 321
           G TGL N+GNTCFMNS +Q LV+  E   YF   Y +R+IN  NPLG             
Sbjct: 263 GFTGLRNIGNTCFMNSTLQMLVNCKELQVYFSGGYYKRDINVMNPLGFGGRLAEVFAEFM 322

Query: 322 ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E L+F+LDGLHEDLNRV+ KP   
Sbjct: 323 KQMWNGMNRAYEPTKIKELVAEKATQFANFAQHDAHEFLSFVLDGLHEDLNRVRVKPTTN 382

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + +A+GRPD EV+ E W NH+ RNDSI VD+  GQ KS L CP CN++S+TFDPF YL++
Sbjct: 383 TIEAEGRPDIEVSREAWRNHLLRNDSIFVDLFHGQLKSRLQCPKCNQISITFDPFAYLAV 442

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
           P      R+ TV  +  D    P    V     G+  +++  L  + ++   + +++ E+
Sbjct: 443 PF-PKEKRSSTVYFWPLDPCLKPVRIMVRYNADGKISEVLDALSRLVNV-NPKSMRIIEV 500

Query: 466 QNHSIQRFLDDPLISLSTIKDDDHLAAYRV-------PKLVKKAVFLQLIHR 510
            NH I R   +P  S++ I   D +  ++V         +V+ AV  +L++R
Sbjct: 501 NNHRIVRAY-NPDDSVNNILTTDIIYVFQVHDPYDCNDDIVEFAVVQRLLYR 551



 Score =  102 bits (254), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 58/159 (36%), Positives = 92/159 (57%), Gaps = 12/159 (7%)

Query: 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM-- 738
           SLY  L  F   E L PE+ WYC +CKE  +A+K+L L+RLP +L+I LKRF Y+ S+  
Sbjct: 789 SLYDMLAMFSETERLKPEESWYCSKCKEHVEATKQLVLYRLPPILIIQLKRFIYTTSLMT 848

Query: 739 ---KHKLETFVNFPIHDFNLTKYVANKNSSRRQL-YELYALTNHYGGMGSGHYTAHIKLL 794
              + K +  V +P+ + +L +++++   SR++  Y+L  +  H G    GHY +  +LL
Sbjct: 849 VHRRSKDDRPVRYPLDNLDLAQFLSDTAPSRQETKYDLTGVVCHSGSSYFGHYISLGRLL 908

Query: 795 D------ENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
                  E  W NFDDS ++      V++  AY+LFY++
Sbjct: 909 SIDGKTTEIDWRNFDDSIVTRAQLSRVQNDDAYLLFYKQ 947


>gi|310798441|gb|EFQ33334.1| ubiquitin carboxyl-terminal hydrolase [Glomerella graminicola M1.001]
          Length = 1490

 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 67/152 (44%), Positives = 107/152 (70%)

Query: 676  RTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYS 735
            + + ++L  CL+ F + E L  +DMWYCP+CKE R+ASKK DLW+ P++LV+HLKRFS +
Sbjct: 1095 KKQGITLDECLDEFEKAEVLSEQDMWYCPRCKEHRRASKKFDLWKTPDILVVHLKRFSSA 1154

Query: 736  RSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLD 795
               + KL+  V+FPI   +L K V  + + + ++Y+L A+ +H+GG+G GHYTA+ +   
Sbjct: 1155 GWRRDKLDVLVDFPIEGLDLHKRVLCQETGKEEIYDLIAVDDHFGGLGGGHYTAYGRNFV 1214

Query: 796  ENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            + +WYN++D+ +S  + + V + AAY+LFYRR
Sbjct: 1215 DGQWYNYNDTSVSKTSPESVVTRAAYLLFYRR 1246



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 106/223 (47%), Gaps = 56/223 (25%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLG--------- 319
           G  +G  GL NLGNTC+MNSA+QC+    E  +YF  D Y+ E+N  NPLG         
Sbjct: 438 GRGLGAVGLQNLGNTCYMNSALQCVRSVEELTKYFLTDQYKEELNKANPLGYKGQVAMAY 497

Query: 320 --------------------------------------MVELLAFLLDGLHEDLNRVKHK 341
                                                   E L FLLD L EDL+R+K K
Sbjct: 498 GGLLKEIYAESRGAVSPRDFKNTVGRARSTFQGWGQQDTQEFLGFLLDALQEDLSRIKKK 557

Query: 342 PYIKSKDADGR--PDEE----VADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSV 395
           PYI+  D+      +EE    +A+E W     R+DS++ D+  G YKSTL CP C+K+S+
Sbjct: 558 PYIEKPDSTDEMIGNEEAIRKMAEEVWDITRKRDDSVVADLFTGLYKSTLKCPTCDKISI 617

Query: 396 TFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKH 438
           TFDPF  L+LPL      + TV  +  + +  P    V + KH
Sbjct: 618 TFDPFNNLTLPLPMEDMWSRTVKFYPLNDA--PVQIEVELSKH 658


>gi|119610427|gb|EAW90021.1| hCG57025, isoform CRA_a [Homo sapiens]
          Length = 891

 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 133/505 (26%), Positives = 222/505 (43%), Gaps = 101/505 (20%)

Query: 382 KSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVT-VFTSD-------GSALPSTYTV 433
           +S+L CP C K S TFDPF+ +SLP+    TR ++VT VF S        G A+P   TV
Sbjct: 15  RSSLTCPHCLKQSNTFDPFLCVSLPIPLRQTRFLSVTLVFPSKSQRFLRVGLAVPILSTV 74

Query: 434 TVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTIKDDDHLAA 492
                   R ++   G +     ++E+ + E+     QR F D+    L+TI + D++ A
Sbjct: 75  AA-----LRKMVAEEGGV----PADEVILVELYPSGFQRSFFDE--EDLNTIAEGDNVYA 123

Query: 493 YRVPK------LVKKAVFLQLIHRLQEQEP---------------------GAAQTTSQW 525
           ++VP       L    + L    RL  +E                      G+ Q  S+ 
Sbjct: 124 FQVPPSPSQGTLSAHPLGLSASPRLAAREGQRFSLSLHSESKVLILFCNLVGSGQQASR- 182

Query: 526 KAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEA 585
             +G P +  I  D  +S  ++Q ++   +   +K E+ +                    
Sbjct: 183 --FGPPFL--IREDRAVSWAQLQQSILSKVRHLMKSEAPVQ------------------- 219

Query: 586 HSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVD 645
             N  S  +      S A +     L   D   +C   +V+    +R P     + + V+
Sbjct: 220 --NLGSLFSIRVVGLSVACSY----LSPKDSRPLC-HWAVDRVLHLRRPGGPPHVKLAVE 272

Query: 646 WSQKLLEK-YNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCP 704
           W   + E+ + +   E   +        +  +    +L  C + + +EE L  +D W CP
Sbjct: 273 WDSSVKERLFGSLQEERAQDADSVWQQQQAHQQHSCTLDECFQFYTKEEQLAQDDAWKCP 332

Query: 705 QCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNS 764
            C+  +Q   KL LW LP++L+IHLKRF      ++KL T V FP+   N+  +VA +++
Sbjct: 333 HCQVLQQGMVKLSLWTLPDILIIHLKRFCQVGERRNKLSTLVKFPLSGLNMAPHVAQRST 392

Query: 765 SRRQ----------------------LYELYALTNHYGGMGSGHYTAHIKLLDENRWYNF 802
           S                         LY+LYA+ NH+G +  GHYTA+ +   + +WY++
Sbjct: 393 SPEAGLGPWPSWKQPDCLPTSYPLDFLYDLYAVCNHHGNLQGGHYTAYCRNSLDGQWYSY 452

Query: 803 DDSHISPINEDDVKSAAAYVLFYRR 827
           DDS + P+ ED+V +  AY+LFY++
Sbjct: 453 DDSTVEPLREDEVNTRGAYILFYQK 477


>gi|58269838|ref|XP_572075.1| ubiquitin carboxyl-terminal hydrolase 12 [Cryptococcus neoformans
           var. neoformans JEC21]
 gi|57228311|gb|AAW44768.1| ubiquitin carboxyl-terminal hydrolase 12, putative [Cryptococcus
           neoformans var. neoformans JEC21]
          Length = 1490

 Score =  162 bits (410), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 93/239 (38%), Positives = 120/239 (50%), Gaps = 55/239 (23%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV----------- 321
           GL GL NLGNTCFMNSA+QCL +T E ++YF    Y  E+N  NPLGM            
Sbjct: 514 GLVGLQNLGNTCFMNSAVQCLSNTKELSQYFLSGVYTEELNRDNPLGMQGQIAEAFGQVV 573

Query: 322 ---------------------------------------ELLAFLLDGLHEDLNRVKHKP 342
                                                  E +AFLLDGLHEDLNR+  KP
Sbjct: 574 ENLWAPTSSMHSSYSPRQLKWTTSRFAPQFAGYGQHDTQEFIAFLLDGLHEDLNRILKKP 633

Query: 343 YIKSKD-ADGRPDEEVAD---EYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFD 398
           YI+  D   G  D+E+A+   E W  +  RNDS+IVD+ QGQ KSTLVCP C+K S+TFD
Sbjct: 634 YIEKPDWKPGGGDKELAELGKECWDGYKKRNDSVIVDLFQGQLKSTLVCPECHKESITFD 693

Query: 399 PFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQS 457
           PFMYL++PL     R   +T    D    P    + +P++     +   +G++   K S
Sbjct: 694 PFMYLTVPLPIAQNRQFKITFVPRDTEKPPVNVKLLIPQNASFAQVKDKIGSLFDCKGS 752



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/207 (35%), Positives = 120/207 (57%), Gaps = 21/207 (10%)

Query: 642  VYVDWSQKLLEKYNTHFL--ENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPED 699
            ++ +WS     ++    +  E++++   +  + KK   + + +  CL+ F +EE L  +D
Sbjct: 1094 IFCEWSGADFAEWLNDNVKGEDVIDPAISKELVKKREGKHIGIEDCLDEFSKEETLGQDD 1153

Query: 700  MWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYV 759
            +WYCP CK+ + A+KKL++++ P++LVI +KRF  SR M  KL+  V+FPI   +L   +
Sbjct: 1154 LWYCPVCKKHQAATKKLEIYKAPDILVICIKRFGSSRRMGDKLDNLVHFPIDGLDLEDRI 1213

Query: 760  ANKNSSRR-------------------QLYELYALTNHYGGMGSGHYTAHIKLLDENRWY 800
              +  ++                     LY+LYA+ NH+GGMG GHYTA  +   +N+WY
Sbjct: 1214 GERQVAKTLKLNGEDVEGYGIEDDGEPLLYDLYAVDNHFGGMGGGHYTAFCRNQVDNQWY 1273

Query: 801  NFDDSHISPINEDDVKSAAAYVLFYRR 827
            N+DDS +S  +   V+S AAY+LFYRR
Sbjct: 1274 NYDDSRVSKADVSSVQSRAAYLLFYRR 1300


>gi|393906038|gb|EJD74155.1| ubiquitin carboxyl-terminal hydrolase [Loa loa]
          Length = 1029

 Score =  162 bits (410), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 101/292 (34%), Positives = 147/292 (50%), Gaps = 58/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDY-RREINWQNPLGMV----------- 321
           G TGL N+GNTCFMNS++Q LV+  E   YF   Y +++IN  NPLG             
Sbjct: 327 GFTGLRNIGNTCFMNSSLQMLVNCKELQIYFSGGYYKKDINVMNPLGFGGRLAEVFAEFM 386

Query: 322 ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E L+F+LDGLHEDLNRV+ KP   
Sbjct: 387 KQMWNGMNRAYEPTKIKELVAEKATQFANFAQHDAHEFLSFVLDGLHEDLNRVRVKPTTN 446

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + +A+GRPD EV+ E W NH+ RNDSI VD+  GQ KS L CP CN++S+TFDPF YL++
Sbjct: 447 TIEAEGRPDIEVSREAWHNHLLRNDSIFVDLFHGQLKSRLQCPKCNQISITFDPFAYLAV 506

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
           P      R+ TV  +  D    P    V     G+  +++  L  + ++   + +++ E+
Sbjct: 507 PF-PKEKRSSTVYFWPLDPCLKPVRIVVRYNADGKISEVLDALSRLVNV-NPKSMRMVEV 564

Query: 466 QNHSIQRFLDDPLISLSTIKDDDHLAAYRV-------PKLVKKAVFLQLIHR 510
            NH I R   +P  S++ I   D +  ++V         +V+ AV  +L++R
Sbjct: 565 NNHRIVRAY-NPDDSVNNILTTDTIYVFQVHDPYDCNDDIVEFAVVQRLLYR 615



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 91/159 (57%), Gaps = 12/159 (7%)

Query: 681  SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM-- 738
            SLY  L  F   E L PE+ WYC +CKE  +A+K+L L+RLP +L+I LKRF Y+ S+  
Sbjct: 855  SLYDMLAMFSETERLKPEESWYCSRCKEHVEATKQLILYRLPPILIIQLKRFIYTTSLMT 914

Query: 739  ---KHKLETFVNFPIHDFNLTKYVANKNSSRRQL-YELYALTNHYGGMGSGHYTAHIKLL 794
               + K +  V +P+ + +L +++++   S ++  Y+L  +  H G    GHY +  +LL
Sbjct: 915  IHRRSKDDRPVRYPLDNLDLAQFLSDTAPSGQETKYDLTGVVCHSGSSYFGHYISLARLL 974

Query: 795  D------ENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
                   E  W NFDDS ++      V++  AY+LFY++
Sbjct: 975  SIDGKTTEIDWRNFDDSIVTRAQHSRVQNDDAYLLFYKQ 1013


>gi|171686156|ref|XP_001908019.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943039|emb|CAP68692.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1516

 Score =  162 bits (409), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 69/149 (46%), Positives = 103/149 (69%), Gaps = 1/149 (0%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            ++L  CL  F +EE L  +D WYCP+CKE R+ASKK DLW+ P++LV+HLKRFS     +
Sbjct: 1102 ITLEDCLNEFEKEEILSEQDTWYCPRCKEHRRASKKFDLWKTPDILVVHLKRFSSVGYRR 1161

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRW 799
             KL+  V+FP+   +LT  V +K   ++++Y+L A+ +H+GG+G GHYTA  K  ++  W
Sbjct: 1162 EKLDILVDFPVEGLDLTSRVIDKEDGKQEIYDLIAVDDHWGGLGGGHYTAKAKNFNDGSW 1221

Query: 800  YNFDDSHISPINE-DDVKSAAAYVLFYRR 827
            Y ++D+ +S  ++   V SAAAY+LFYRR
Sbjct: 1222 YEYNDTGVSKCSDPQKVVSAAAYLLFYRR 1250



 Score =  126 bits (316), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 100/325 (30%), Positives = 141/325 (43%), Gaps = 81/325 (24%)

Query: 231 WSASKG---TSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASV-------GLTGLLN 280
           +S S G   T+RN S+ +  +    S R S      S   TRG +        G  GL N
Sbjct: 389 YSGSNGKNLTTRNSSTAVVQARANVSGRSSPAL---SAPLTRGRAQQKSGRTHGCVGLQN 445

Query: 281 LGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPL---GMV--------------- 321
           LGNTC+MNSA+QCL    E  +YF   + ++EIN  NPL   G V               
Sbjct: 446 LGNTCYMNSALQCLRAVEELTKYFLTHEAKKEINTDNPLAHGGDVALSYGRLLEEIYKDP 505

Query: 322 ------------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADG 351
                                         E L +LLDGL EDLNR+  KPYI+  D+  
Sbjct: 506 TPNSVAPRQFKSVIGRYAPAFSGYGQQDSQEFLGWLLDGLQEDLNRILRKPYIEKPDST- 564

Query: 352 RPDE---------EVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMY 402
             DE         E+A + W     R+DS+I D+  G YKSTLVCP CNK+S+TFDPF  
Sbjct: 565 --DEMINNPAAIREMALQVWDITKRRDDSVISDLFTGLYKSTLVCPECNKISITFDPFTN 622

Query: 403 LSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKV 462
           L+LPL    + +  +  +  + +  P    V + K+   + L Q +     +     +  
Sbjct: 623 LTLPLPMANSWSREIRFYPLNDA--PVNIVVDIDKNSSIKGLKQFISQRVGVPVDRLMAS 680

Query: 463 AEIQNHSIQRFLDDPLISLSTIKDD 487
            E      + + D     ++T+ DD
Sbjct: 681 EEFSGKFFKHYDD-----MATVSDD 700


>gi|312077696|ref|XP_003141417.1| hypothetical protein LOAG_05832 [Loa loa]
          Length = 967

 Score =  162 bits (409), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 101/292 (34%), Positives = 147/292 (50%), Gaps = 58/292 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDY-RREINWQNPLGMV----------- 321
           G TGL N+GNTCFMNS++Q LV+  E   YF   Y +++IN  NPLG             
Sbjct: 265 GFTGLRNIGNTCFMNSSLQMLVNCKELQIYFSGGYYKKDINVMNPLGFGGRLAEVFAEFM 324

Query: 322 ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E L+F+LDGLHEDLNRV+ KP   
Sbjct: 325 KQMWNGMNRAYEPTKIKELVAEKATQFANFAQHDAHEFLSFVLDGLHEDLNRVRVKPTTN 384

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + +A+GRPD EV+ E W NH+ RNDSI VD+  GQ KS L CP CN++S+TFDPF YL++
Sbjct: 385 TIEAEGRPDIEVSREAWHNHLLRNDSIFVDLFHGQLKSRLQCPKCNQISITFDPFAYLAV 444

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
           P      R+ TV  +  D    P    V     G+  +++  L  + ++   + +++ E+
Sbjct: 445 PF-PKEKRSSTVYFWPLDPCLKPVRIVVRYNADGKISEVLDALSRLVNV-NPKSMRMVEV 502

Query: 466 QNHSIQRFLDDPLISLSTIKDDDHLAAYRV-------PKLVKKAVFLQLIHR 510
            NH I R   +P  S++ I   D +  ++V         +V+ AV  +L++R
Sbjct: 503 NNHRIVRAY-NPDDSVNNILTTDTIYVFQVHDPYDCNDDIVEFAVVQRLLYR 553



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 91/159 (57%), Gaps = 12/159 (7%)

Query: 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM-- 738
           SLY  L  F   E L PE+ WYC +CKE  +A+K+L L+RLP +L+I LKRF Y+ S+  
Sbjct: 793 SLYDMLAMFSETERLKPEESWYCSRCKEHVEATKQLILYRLPPILIIQLKRFIYTTSLMT 852

Query: 739 ---KHKLETFVNFPIHDFNLTKYVANKNSSRRQL-YELYALTNHYGGMGSGHYTAHIKLL 794
              + K +  V +P+ + +L +++++   S ++  Y+L  +  H G    GHY +  +LL
Sbjct: 853 IHRRSKDDRPVRYPLDNLDLAQFLSDTAPSGQETKYDLTGVVCHSGSSYFGHYISLARLL 912

Query: 795 D------ENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
                  E  W NFDDS ++      V++  AY+LFY++
Sbjct: 913 SIDGKTTEIDWRNFDDSIVTRAQHSRVQNDDAYLLFYKQ 951


>gi|326681008|ref|XP_002667650.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like [Danio
           rerio]
          Length = 673

 Score =  162 bits (409), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 77/146 (52%), Positives = 111/146 (76%), Gaps = 1/146 (0%)

Query: 682 LYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHK 741
           L  C++ F  +E L  +D WYCP CK+ +QA+K+LDLW LP VLV+HLKRFSYSR M+ K
Sbjct: 477 LRDCIQLFTTKEKLGADDPWYCPSCKQHQQATKQLDLWSLPPVLVVHLKRFSYSRYMRDK 536

Query: 742 LETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYN 801
           L+T V FP+ D ++++++ N ++    LY+L A++NHYGGMG GHYTA+ K +++ +WY+
Sbjct: 537 LDTLVEFPLRDLDMSEFLINPHAG-VCLYDLIAVSNHYGGMGGGHYTAYAKNVEDGQWYS 595

Query: 802 FDDSHISPINEDDVKSAAAYVLFYRR 827
           FDDS +SP +E+ + S AAYVLFY+R
Sbjct: 596 FDDSSVSPASEEQIVSKAAYVLFYQR 621



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 105/260 (40%), Gaps = 62/260 (23%)

Query: 63  DTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVMPR 122
           D L++  DYILLP + W +L SWYG                  L     P+  QL V P 
Sbjct: 81  DHLIDELDYILLPADGWRRLISWYG------------------LKEGQQPIARQLAVHP- 121

Query: 123 GECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTLDDANIQ 181
                        +  + R    +F +  E +  +W+ Y       +N    T+ DA + 
Sbjct: 122 ------------AVASIEREMRKLFSIPDEKETRLWNRYMSNTFEPLNKPHSTIQDAGLY 169

Query: 182 MDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNH 241
             Q +++E   N +G+  + S      A   ++   + PS  S                 
Sbjct: 170 QGQVLVIEQ-QNEDGSWPRGSSSLKSSAAALSALPKISPSSLS----------------- 211

Query: 242 SSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFA 301
                       +    N   SSGV  + A  GL GL NLGNTCFMNSA QCL + P   
Sbjct: 212 ---------ANHSSSFSNRNSSSGVCEQRA--GLCGLSNLGNTCFMNSATQCLSNVPPLT 260

Query: 302 RYF-REDYRREINWQNPLGM 320
           ++F  E Y++E+N  NPLGM
Sbjct: 261 QFFLTEQYQQELNQDNPLGM 280


>gi|74186201|dbj|BAE42896.1| unnamed protein product [Mus musculus]
          Length = 296

 Score =  162 bits (409), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 85/205 (41%), Positives = 121/205 (59%), Gaps = 7/205 (3%)

Query: 627 GDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF-KNGPVTKKARTEPLSLYTC 685
            D+T       T   + +DW   +  +Y   + E   E + K+  V    +  P  L  C
Sbjct: 62  SDRTTSPEEMQTQPYIAMDWEPDMKRRY---YDEVEAEGYVKHDCVGYMLKKSPAQLKEC 118

Query: 686 LEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETF 745
           ++ F   E L  E+ WYC  CK+ + A+KKLDLW LPEVL+IHLKRFS+S+  + KL+  
Sbjct: 119 IKLFTTVETLEKENPWYCSSCKQHQLATKKLDLWMLPEVLIIHLKRFSFSKISREKLDNL 178

Query: 746 VNFPIHDFNLTKYVAN-KNSSRRQL--YELYALTNHYGGMGSGHYTAHIKLLDENRWYNF 802
           V FPI D + +++V   KN S   L  Y+L A++NHYGGM  GHYT      D  +W+ F
Sbjct: 179 VQFPIRDLDFSEFVIKPKNESSPDLYKYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYF 238

Query: 803 DDSHISPINEDDVKSAAAYVLFYRR 827
           DD+ +SP+NE+ ++S AAYVLFY+R
Sbjct: 239 DDNSVSPVNENQIESKAAYVLFYQR 263


>gi|354507974|ref|XP_003516029.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 11-like, partial
           [Cricetulus griseus]
          Length = 340

 Score =  162 bits (409), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 83/194 (42%), Positives = 121/194 (62%), Gaps = 7/194 (3%)

Query: 638 TSIVVYVDWSQKLLEKYNTHFLENLLEVF-KNGPVTKKARTEPLSLYTCLEAFLREEPLV 696
           T   + +DW  ++  +Y   + E   E + K+  V    +  P+ L  C++ F   E L 
Sbjct: 117 TQPYIAMDWEPEMKRRY---YDEVEAEGYVKHDCVGYMLKKSPVQLQECIKLFTTVETLE 173

Query: 697 PEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLT 756
            E+ WYC  CK+ + A+KKLDLW LPEVL+IHLKRFS+S+  + KL+T V FPI D + +
Sbjct: 174 KENPWYCSSCKQHQLATKKLDLWMLPEVLIIHLKRFSFSKFSREKLDTLVQFPIRDLDFS 233

Query: 757 KYVAN-KNSSRRQL--YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINED 813
           ++V   KN S   +  Y+L A++NHYGGM  GHYT      D  +W+ FDD+ +SP+NE+
Sbjct: 234 EFVIKPKNESTPDMYKYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYFDDNSVSPVNEN 293

Query: 814 DVKSAAAYVLFYRR 827
            ++S AAYVLFY+R
Sbjct: 294 QIESKAAYVLFYQR 307


>gi|145547132|ref|XP_001459248.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124427072|emb|CAK91851.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1050

 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 86/197 (43%), Positives = 105/197 (53%), Gaps = 48/197 (24%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGM------------ 320
           G+ GL NLGNTCFMNS  QCL +T + + YF    Y  EIN  NPLG             
Sbjct: 380 GIAGLANLGNTCFMNSGTQCLSNTYQLSEYFITNKYFDEINEDNPLGTKGQLVRKYASLI 439

Query: 321 -----------------------------------VELLAFLLDGLHEDLNRVKHKPYIK 345
                                               EL+ FLLDGLHEDLNRVK KPY++
Sbjct: 440 KKLWCGHKNIVIPTSFKKAVGQFQPMFKGFQQHDSSELITFLLDGLHEDLNRVKKKPYVE 499

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           SKD  G+PD EVA E W NH+ARN SIIVD+  GQYKSTL CP C+++S+TFDPF+   L
Sbjct: 500 SKDNQGKPDFEVAKESWDNHLARNQSIIVDLMHGQYKSTLKCPTCSQISITFDPFLTCGL 559

Query: 406 PLQATTTRTMTVTVFTS 422
            +     +++ V    S
Sbjct: 560 SIPNKKQKSIQVKFIKS 576



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 65/173 (37%), Positives = 98/173 (56%), Gaps = 25/173 (14%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM- 738
            ++L  CL    + E L  ++ WYC  CKE  QA K + +++  ++L+  LKRF  S    
Sbjct: 864  VTLQECLRQSEQPEQLAEDNAWYCKVCKEHVQAYKSMQIYKASDILIFTLKRFKASSGFF 923

Query: 739  KHKLETFVNFPIHDFNLTKYVANKN------------------------SSRRQLYELYA 774
            K KLETFV FP+   +LT ++ NKN                         +++ +Y+L+A
Sbjct: 924  KQKLETFVEFPVRGLDLTDFILNKNRPLDYEQEVKDQEKIEEEFQEQNEGNKKLIYDLFA 983

Query: 775  LTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            ++NH+GGMG GHYTA  K     +WYNFDD+ +  ++ED V + +AYVLFY+R
Sbjct: 984  VSNHFGGMGGGHYTAFGKNHLNGKWYNFDDAQVGEVDEDQVVTKSAYVLFYKR 1036


>gi|328724654|ref|XP_003248213.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 32-like isoform 2
            [Acyrthosiphon pisum]
          Length = 1445

 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/277 (38%), Positives = 134/277 (48%), Gaps = 60/277 (21%)

Query: 271  ASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV-------- 321
            A  G TGL NLGNTCFMN+A+QC+ +T    +YF  D +  E+N  NPLGM         
Sbjct: 744  AEKGATGLNNLGNTCFMNAALQCVSNTRLLTQYFINDMHLYELNRSNPLGMKGCIAKRYG 803

Query: 322  ---------------------------------------ELLAFLLDGLHEDLNRVKHKP 342
                                                   ELLAFLLDGLHEDLNRV  KP
Sbjct: 804  DLIHEIWRGTAKTIAPLKLRWTIGKYAPRFNGFQQHDSQELLAFLLDGLHEDLNRVHGKP 863

Query: 343  YIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMY 402
            Y +  D++GRPD  VA+E W NHI RN SI+VD+  GQ KS + C  C   SV FDPF Y
Sbjct: 864  YSELTDSEGRPDVTVAEEAWENHIVRNKSIVVDLFHGQLKSKVTCKKCGHESVRFDPFNY 923

Query: 403  LSLPLQATTTRTMTVTVFTSDGSALPSTYTVTV---PKHGRCRDLIQVLGNICSLKQSEE 459
            LSLPL   +   + V V   DG+ +P  Y + +    KH   +  +  L  I     +  
Sbjct: 924  LSLPLPMESYVCLQVIVIKLDGT-VPVKYGLRMNADDKHSVVKSKLSSLSGI----SANN 978

Query: 460  LKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVP 496
            LK+AEI    I+  + D       +K    L AY +P
Sbjct: 979  LKLAEIIGAQIKNIIVDE----QKVKPGSLLYAYELP 1011



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 40/87 (45%), Positives = 56/87 (64%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            + TEP+SL +CL AF +EE L   + +YC  C++ + ASKKL +WRLP +L++HLKRF Y
Sbjct: 1280 SHTEPISLESCLAAFTKEEQLSEAEKYYCSTCQDHQLASKKLQIWRLPPILIVHLKRFQY 1339

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVAN 761
                  K    V FP  DF+ T Y+A+
Sbjct: 1340 LNGKWVKSHKVVKFPYKDFDPTDYLAS 1366



 Score = 63.5 bits (153), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 51/94 (54%), Gaps = 4/94 (4%)

Query: 37  RPSGIDNSDLVNDATAEDP---GAGPEIV-DTLLEGRDYILLPQEVWNQLHSWYGGGPTL 92
           +P  I+NS LV+  T +     G G ++  + LL GRD+ L+P  +W  L  WY G P L
Sbjct: 506 KPGPINNSGLVSVPTTKVTSLTGEGGQLKRNMLLRGRDFQLVPNSLWKALVQWYRGSPAL 565

Query: 93  ARKVISSGLSQTELAVEVYPLRLQLLVMPRGECS 126
            R+VI S     E  +E+YPL L+LL    G  S
Sbjct: 566 PRQVIQSNRGSGETELELYPLNLRLLKHHNGTLS 599


>gi|344235361|gb|EGV91464.1| Ubiquitin carboxyl-terminal hydrolase 11 [Cricetulus griseus]
          Length = 342

 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 83/194 (42%), Positives = 121/194 (62%), Gaps = 7/194 (3%)

Query: 638 TSIVVYVDWSQKLLEKYNTHFLENLLEVF-KNGPVTKKARTEPLSLYTCLEAFLREEPLV 696
           T   + +DW  ++  +Y   + E   E + K+  V    +  P+ L  C++ F   E L 
Sbjct: 119 TQPYIAMDWEPEMKRRY---YDEVEAEGYVKHDCVGYMLKKSPVQLQECIKLFTTVETLE 175

Query: 697 PEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLT 756
            E+ WYC  CK+ + A+KKLDLW LPEVL+IHLKRFS+S+  + KL+T V FPI D + +
Sbjct: 176 KENPWYCSSCKQHQLATKKLDLWMLPEVLIIHLKRFSFSKFSREKLDTLVQFPIRDLDFS 235

Query: 757 KYVAN-KNSSRRQL--YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINED 813
           ++V   KN S   +  Y+L A++NHYGGM  GHYT      D  +W+ FDD+ +SP+NE+
Sbjct: 236 EFVIKPKNESTPDMYKYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYFDDNSVSPVNEN 295

Query: 814 DVKSAAAYVLFYRR 827
            ++S AAYVLFY+R
Sbjct: 296 QIESKAAYVLFYQR 309


>gi|395517798|ref|XP_003763060.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 11-like, partial
           [Sarcophilus harrisii]
          Length = 265

 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 80/190 (42%), Positives = 117/190 (61%), Gaps = 7/190 (3%)

Query: 642 VYVDWSQKLLEKY-NTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
           + +DW   + ++Y N    E  ++    G V +KA   P+ L  C+E F   E L  E+ 
Sbjct: 42  IAIDWEPDMKKRYYNEVEAEGYVKHDCMGYVLRKA---PVRLQECIELFTTVETLEEENP 98

Query: 701 WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
           WYCP CK  + A+KKLDLW LPE L+IHLKRFSY++  + KL+T V FPI D + ++++ 
Sbjct: 99  WYCPTCKRHQLATKKLDLWSLPEALIIHLKRFSYTKFSREKLDTLVEFPIRDLDFSEFII 158

Query: 761 NKNSSRRQL---YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKS 817
              +    +   Y+L A++NHYGG+  GHYT   +  D  +W+ FDDS +SP++E  ++S
Sbjct: 159 KPRTEADPIPCKYDLIAVSNHYGGLRDGHYTTFARNKDSGQWHYFDDSSVSPVSESQIES 218

Query: 818 AAAYVLFYRR 827
            AAYVLFY R
Sbjct: 219 KAAYVLFYHR 228


>gi|212527418|ref|XP_002143866.1| ubiquitin hydrolase, putative [Talaromyces marneffei ATCC 18224]
 gi|210073264|gb|EEA27351.1| ubiquitin hydrolase, putative [Talaromyces marneffei ATCC 18224]
          Length = 1448

 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 80/153 (52%), Positives = 104/153 (67%), Gaps = 1/153 (0%)

Query: 676  RTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYS 735
            R + LSL  CL+ F REE L   D WYCP+CKE R+ASKK +LW+ P++LVIHLKRFS S
Sbjct: 1101 RKKGLSLDQCLDEFGREEILSENDAWYCPRCKEHRRASKKFELWKTPDILVIHLKRFSAS 1160

Query: 736  RSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLD 795
            R  + K++  V+FPI   +L   VA+      Q+Y+L+A+ NHYGG+G GHYTA+ K   
Sbjct: 1161 RGFRDKIDELVDFPIEGLDLNGRVASTEPGESQIYDLFAVDNHYGGLGGGHYTAYAKNFL 1220

Query: 796  ENRWYNFDDSHISP-INEDDVKSAAAYVLFYRR 827
             N W  ++DSH+S  IN   V S AAY+LFYRR
Sbjct: 1221 TNEWNEYNDSHVSKSINPAKVISTAAYLLFYRR 1253



 Score =  126 bits (317), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 94/289 (32%), Positives = 126/289 (43%), Gaps = 64/289 (22%)

Query: 265 GVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDY-RREINWQNPL---GM 320
           G    G   G TG  NLGNTC+M SA+QC+    E   YF  DY ++++N  NPL   G 
Sbjct: 468 GRKKDGRPKGNTGFTNLGNTCYMASALQCVRSVEELTLYFLNDYYKKDLNPSNPLSHNGD 527

Query: 321 V--------------------------------------------ELLAFLLDGLHEDLN 336
           V                                            E + FLLDGL EDLN
Sbjct: 528 VAKAYANLLRAVYEDSPASFSPKHFKHTIGRYGPAFSGYGQQDSQEFVLFLLDGLQEDLN 587

Query: 337 RVKHKPYIKSKDADGRPDEEV---------ADEYWANHIARNDSIIVDVCQGQYKSTLVC 387
           R++ KPYI+  D+    DE V         AD  W  + ARNDS+I D+  G YKSTL C
Sbjct: 588 RIQKKPYIEKPDS---TDEMVHDPAALRAFADRCWEIYKARNDSVITDLFAGMYKSTLHC 644

Query: 388 PVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQV 447
           PVC+KVS+ FDPF  L+L L      T  +  F       P    V + K+   + L ++
Sbjct: 645 PVCDKVSIIFDPFNNLTLQLPVENLWTKDIFFFPL--HKPPVLIDVEIDKNASIKALKEL 702

Query: 448 LGNICSLKQSEELKVAEIQNHSIQRFLDD-PLISLSTIKDDDHLAAYRV 495
           +        S  L +AE+  +   R  D+   I+ S I   D +  + V
Sbjct: 703 VAKKTGTDPS-RLIMAEVYRNKFYRLFDNTSTIADSNITGSDDIGIFEV 750


>gi|426196599|gb|EKV46527.1| hypothetical protein AGABI2DRAFT_178845 [Agaricus bisporus var.
            bisporus H97]
          Length = 1277

 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 72/176 (40%), Positives = 106/176 (60%), Gaps = 19/176 (10%)

Query: 671  VTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLK 730
              K+ + + LSL  CL+ F +EE L  +D+WYCPQCK+ +QA+K+ DLW+ P+VLV+HLK
Sbjct: 885  AAKEKKNKGLSLQDCLDEFTKEEELGEDDLWYCPQCKKHQQATKRFDLWKAPDVLVVHLK 944

Query: 731  RFSYSRSMKHKLETFVNFPIHDFNLTKYVANK-------------------NSSRRQLYE 771
            RFS SR+++ K++ F++FPI D NL   V  +                   N     +Y+
Sbjct: 945  RFSNSRTLRDKIDAFIDFPIQDLNLEDMVRERRVAKALQAEGVNIEELNLTNLDEPLIYD 1004

Query: 772  LYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            L+ +  H GG+G GHY A++       WY+FDDS + P   +D  +A AY+LFYRR
Sbjct: 1005 LFGVDEHMGGLGGGHYRAYVLNHANEEWYHFDDSFVRPAKAEDAVNADAYLLFYRR 1060



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 150/348 (43%), Gaps = 110/348 (31%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM------------ 320
           G  GL N+GNTCFMNSA+QCLVHT E + YF    +  E+N  NPLGM            
Sbjct: 405 GTLGLSNMGNTCFMNSALQCLVHTKELSDYFLSGVFEDELNADNPLGMGGAIAEAFGSLL 464

Query: 321 -------------------------------------VELLAFLLDGLHEDLNRVKHKPY 343
                                                 EL+AFLLDGLHEDLNR+  KPY
Sbjct: 465 HRIWADSGPSTSYSPREFKQVLQKFAPQFSGYQQHDSQELVAFLLDGLHEDLNRILKKPY 524

Query: 344 IKSKDADGRPDEEV---ADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPF 400
           ++  D +G  + E+   A + W  ++ RNDS+IVD+ QGQY+STLVCP C K+ +  +  
Sbjct: 525 VEKPDWEGGGNLELVQLAKKSWDGYLLRNDSVIVDLFQGQYQSTLVCPECGKIPIEIN-- 582

Query: 401 MYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEEL 460
                                               +    +D+  +LG   ++ + + L
Sbjct: 583 ------------------------------------RDASFKDVRNLLGRWLNV-EGDNL 605

Query: 461 KVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEP---- 516
              EI NH   + LDD ++ +  + ++D +  Y +P   +++       + Q ++P    
Sbjct: 606 LTLEIFNHRFYKNLDDSVM-VGDMTENDVIVCYGLPCNAQQS----RTFKRQPEDPLILP 660

Query: 517 -------GAAQ--TTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRML 555
                  GA Q   +S+   +G P V ++S D+      + + V   L
Sbjct: 661 VFLCDAKGAGQWAYSSRVSLFGYPTVVAVSPDEATDVNALYTVVMERL 708



 Score = 42.4 bits (98), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 6/108 (5%)

Query: 22  SLLEHFNSAGSSASKRPSGIDNSDL--VNDATAEDPGAGPEIVDTLLEGRDYILLPQEVW 79
           S  + +  A +    +   +   DL  V++A   DP     +   L++G D   +P +VW
Sbjct: 131 SWWKRWRKACTGEEDKEGAVTEQDLGPVDNAPLLDPDGN--LKQGLIDGLDVEFVPHDVW 188

Query: 80  NQLHSWYGGG-PTLARKVISSGLSQTELAVEVYPLRLQLLVMPRGECS 126
             L  WYG    +L R+V+  G ++ E  +E++P R ++L + R  C+
Sbjct: 189 RCLAIWYGEPLHSLPRRVVPRGAAK-EPTLELHPPRFRVLPLARPRCA 235


>gi|325179592|emb|CCA13990.1| ubiquitinspecific protease putative [Albugo laibachii Nc14]
          Length = 1806

 Score =  161 bits (407), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 169/640 (26%), Positives = 263/640 (41%), Gaps = 157/640 (24%)

Query: 1    WWQHWIDYVNQDQPNNTGDGS--------------------SLLEH-FNSAGSSASKRPS 39
            WW+ W  Y   +  N T  G                     S+L+H F S  S   +RP 
Sbjct: 607  WWRKWCYYTEMNVMNGTRYGPLAIPKLPQSAENRHVKEHEVSMLDHEFRSTHSC--RRPG 664

Query: 40   GIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWY-GGGPTLARKVIS 98
             I + +++  + +        + + +  GRD  L+P  V+  L  WY GGGP + R +I 
Sbjct: 665  PIASWNILKRSGSR------RLNERIAVGRDVFLVPSTVYAMLAMWYSGGGPDVKRSIIP 718

Query: 99   SGLSQTE----LAVEVYPLRLQLLVMPRGECSTIRISKKETI------GELHRRACSI-- 146
                 TE    L +E++PL L++  +     S +   ++ T+      G L   +C +  
Sbjct: 719  VKNDDTEPTEILELELFPLVLRVARVELTTGSVVMSGEEVTLSFLSSYGSLLEASCKVLL 778

Query: 147  FYLNLEQICIWDYYGHRKHA--------LMND--MDRTLDDANIQM-----DQDILVEVL 191
            +   +E+  +W  Y H +H         L  D   DRT+   N  +      Q +L+  +
Sbjct: 779  YMKKIEKARLW--YFHEQHPTHRFPLWQLERDHGQDRTITSVNEYLFHALTQQCVLLLEI 836

Query: 192  DNVNGTNCKSSIQDNGFAEKKASSVLVEPS--------KSSLSIAGGWSAS-KGTSRNHS 242
             + +G+   S +     A  K  + L  P+        KS   IA   +AS K   R+ +
Sbjct: 837  QDSDGSWPLSQVD----ATTKPPAALPTPTQKPAVTNAKSDPGIATSQNASDKSHIRSGA 892

Query: 243  SEISTSPNLAS--------------------ARDSDNTLGSSGVTTRG------ASVGLT 276
             ++    N  +                     R+   +L    +T R          GL 
Sbjct: 893  FDLCARSNFEAFIGAPHRDPNSSDTDSQSSSLREEPYSLALDPITQRRFLTDAFVGDGLI 952

Query: 277  GLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLG---------------- 319
            GL NLGNTC+M SA+QCL HT     Y R+  Y  +IN +N  G                
Sbjct: 953  GLENLGNTCYMGSALQCLSHTRLLVEYLRKQAYLSDINDRNRDGHQGRLATAFGELIRVL 1012

Query: 320  ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                                E LAFLL GL EDLNRV  KPY +
Sbjct: 1013 WSRQNGKKRHFAPAAFKRTISKLQPQFQGSEQHDAQEFLAFLLSGLSEDLNRVVVKPYAE 1072

Query: 346  SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
             KD+DGR D  VA+E+W NH+ R  S++V +  GQYKS L C +C+  S  F+PF +L L
Sbjct: 1073 LKDSDGRSDAVVANEWWDNHLKREVSVVVALFTGQYKSLLECELCHYESARFEPFTFLQL 1132

Query: 406  PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICS-------LKQSE 458
             L  +++R++ V VF ++    P   +V V K      L+Q +  + S        +Q++
Sbjct: 1133 SLPESSSRSIVVIVFFNNDHP-PLRCSVRVSKKSFVLQLLQQVAILVSKQGKNIQKQQAD 1191

Query: 459  ELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKL 498
               +A+I +      L D    +S I+++D L  + V  L
Sbjct: 1192 NFVLAKITSSHTVDMLVDERNPVSMIQENDSLTVFEVDPL 1231



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/93 (45%), Positives = 60/93 (64%), Gaps = 4/93 (4%)

Query: 679  PLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM 738
            PL+L  CL  F  +E +   +  YC +CK  R A+K +D WRLP +LVIHLKRF Y++  
Sbjct: 1514 PLTLDQCLNIFTAQEHI---NEAYCGRCKALRPANKTMDFWRLPPILVIHLKRFCYTQVS 1570

Query: 739  KHKLETFVNFPIHDFNLTKYVANKNSSRRQLYE 771
            + KL  FV+FP+   ++TK+VA +   +R LYE
Sbjct: 1571 RRKLYHFVDFPLTGLDMTKFVAKRRRPKR-LYE 1602



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 43/72 (59%)

Query: 756  TKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDV 815
            T  V  +  +   LY+LYA+ NH G + +GHY A+I+   + RW  F+D     I+  +V
Sbjct: 1679 TATVLTQTRNESFLYDLYAVVNHVGALATGHYFAYIRSEIDGRWKCFNDHQCKDIDAKEV 1738

Query: 816  KSAAAYVLFYRR 827
             S++AY+LFY R
Sbjct: 1739 ISSSAYILFYIR 1750


>gi|328724652|ref|XP_003248212.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 32-like isoform 1
            [Acyrthosiphon pisum]
          Length = 1554

 Score =  161 bits (407), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 106/277 (38%), Positives = 134/277 (48%), Gaps = 60/277 (21%)

Query: 271  ASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV-------- 321
            A  G TGL NLGNTCFMN+A+QC+ +T    +YF  D +  E+N  NPLGM         
Sbjct: 744  AEKGATGLNNLGNTCFMNAALQCVSNTRLLTQYFINDMHLYELNRSNPLGMKGCIAKRYG 803

Query: 322  ---------------------------------------ELLAFLLDGLHEDLNRVKHKP 342
                                                   ELLAFLLDGLHEDLNRV  KP
Sbjct: 804  DLIHEIWRGTAKTIAPLKLRWTIGKYAPRFNGFQQHDSQELLAFLLDGLHEDLNRVHGKP 863

Query: 343  YIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMY 402
            Y +  D++GRPD  VA+E W NHI RN SI+VD+  GQ KS + C  C   SV FDPF Y
Sbjct: 864  YSELTDSEGRPDVTVAEEAWENHIVRNKSIVVDLFHGQLKSKVTCKKCGHESVRFDPFNY 923

Query: 403  LSLPLQATTTRTMTVTVFTSDGSALPSTYTVTV---PKHGRCRDLIQVLGNICSLKQSEE 459
            LSLPL   +   + V V   DG+ +P  Y + +    KH   +  +  L  I     +  
Sbjct: 924  LSLPLPMESYVCLQVIVIKLDGT-VPVKYGLRMNADDKHSVVKSKLSSLSGI----SANN 978

Query: 460  LKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVP 496
            LK+AEI    I+  + D       +K    L AY +P
Sbjct: 979  LKLAEIIGAQIKNIIVDE----QKVKPGSLLYAYELP 1011



 Score = 89.4 bits (220), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 40/87 (45%), Positives = 56/87 (64%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            + TEP+SL +CL AF +EE L   + +YC  C++ + ASKKL +WRLP +L++HLKRF Y
Sbjct: 1280 SHTEPISLESCLAAFTKEEQLSEAEKYYCSTCQDHQLASKKLQIWRLPPILIVHLKRFQY 1339

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVAN 761
                  K    V FP  DF+ T Y+A+
Sbjct: 1340 LNGKWVKSHKVVKFPYKDFDPTDYLAS 1366



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 51/94 (54%), Gaps = 4/94 (4%)

Query: 37  RPSGIDNSDLVNDATAEDP---GAGPEIV-DTLLEGRDYILLPQEVWNQLHSWYGGGPTL 92
           +P  I+NS LV+  T +     G G ++  + LL GRD+ L+P  +W  L  WY G P L
Sbjct: 506 KPGPINNSGLVSVPTTKVTSLTGEGGQLKRNMLLRGRDFQLVPNSLWKALVQWYRGSPAL 565

Query: 93  ARKVISSGLSQTELAVEVYPLRLQLLVMPRGECS 126
            R+VI S     E  +E+YPL L+LL    G  S
Sbjct: 566 PRQVIQSNRGSGETELELYPLNLRLLKHHNGTLS 599



 Score = 46.2 bits (108), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 3/78 (3%)

Query: 750  IHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISP 809
            + DF+  K V   N    + Y LYA+  H G +G GHY ++       +WY ++DS    
Sbjct: 1442 LQDFHQHKLVGEFNPLDLK-YNLYAVVCHSGILGGGHYVSY-ACNPNGKWYCYNDSSCKE 1499

Query: 810  INEDDVKSAAAYVLFYRR 827
            +   ++ ++ AY+LFY R
Sbjct: 1500 VT-GEIDTSGAYMLFYER 1516


>gi|367027774|ref|XP_003663171.1| hypothetical protein MYCTH_2304715 [Myceliophthora thermophila ATCC
            42464]
 gi|347010440|gb|AEO57926.1| hypothetical protein MYCTH_2304715 [Myceliophthora thermophila ATCC
            42464]
          Length = 1536

 Score =  161 bits (407), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/149 (46%), Positives = 103/149 (69%), Gaps = 1/149 (0%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            ++L  CL+ F +EE L  +D WYCP+CKE R+ASKK DLW+ P++L++HLKRFS S   +
Sbjct: 1097 IALDDCLDEFEKEEILSEQDTWYCPRCKEHRRASKKFDLWKTPDILIVHLKRFSSSGWRR 1156

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRW 799
             KL+  V+FP+   +LTK V NK   + ++++L A+ +H+GG+G GHYTA  K   +  W
Sbjct: 1157 DKLDILVDFPVEGLDLTKRVINKEEGKEEVFDLIAVDDHWGGLGGGHYTAFAKNFIDGEW 1216

Query: 800  YNFDDSHISPINEDD-VKSAAAYVLFYRR 827
            Y ++DS +S   +   V ++AAY+LFYRR
Sbjct: 1217 YEYNDSSVSKQKDTSRVVTSAAYLLFYRR 1245



 Score =  140 bits (352), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 137/475 (28%), Positives = 197/475 (41%), Gaps = 118/475 (24%)

Query: 158 DYYGHRKHALMN---DMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKAS 214
           +Y G +  AL+    D    LD+   Q+D+D  V    N  G     +++D   A + +S
Sbjct: 334 NYNGRKNLALVGLAVDQTLVLDE---QIDRDAFVS---NYRG----GTVKDRALAARSSS 383

Query: 215 SVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVG 274
           + LV              A +G   N S   S +P  A  R              G ++G
Sbjct: 384 TGLV--------------AQRG---NASGRSSPAPQGALTR-------GRAQQKPGRTLG 419

Query: 275 LTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPL---GMV--------- 321
             GL NLGNTC+MNSA+QC+    E  +YF   + ++EIN  NPL   G V         
Sbjct: 420 CVGLQNLGNTCYMNSALQCVRSVEELTKYFLTHEAQKEINPDNPLSHNGEVAAAYGRLLE 479

Query: 322 ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E L FLLDGL EDLNR+K KPYI+
Sbjct: 480 EIYRDPAPGSIAPRHFKAVIGRYASAFSGYGQQDSQEFLGFLLDGLQEDLNRIKKKPYIE 539

Query: 346 SKDAD----GRPD--EEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDP 399
             D+       P+   E+A + W     R+DS+I D+  G YKSTLVCPVC+KVS+TFDP
Sbjct: 540 KPDSTDDMINNPEAVREMAAKVWDITKKRDDSVIADLFTGMYKSTLVCPVCDKVSITFDP 599

Query: 400 FMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEE 459
           F  L+LPL      + +V  F  +   +P    V + K+   R L Q +     +  +E 
Sbjct: 600 FNNLTLPLPVANVWSRSVKFFPLND--VPVEIVVDLDKNSSIRALKQYIAVRVGVP-AER 656

Query: 460 LKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAA 519
           L   E  +    +F DD       I+  D                + ++H ++       
Sbjct: 657 LFAGEEFHSKFFKFYDDGSAVSDEIQSSD----------------VAVVHEIEAAPTNVY 700

Query: 520 QTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSS 574
               Q    G   ++S S+D+  SS      ++RML P L +      D  DPS+
Sbjct: 701 GPKKQLALNGR--LASPSQDEDDSSPVEDPRLERMLVPVLHR-----IDPSDPSA 748


>gi|367049500|ref|XP_003655129.1| hypothetical protein THITE_2151181 [Thielavia terrestris NRRL 8126]
 gi|347002393|gb|AEO68793.1| hypothetical protein THITE_2151181 [Thielavia terrestris NRRL 8126]
          Length = 1703

 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 68/149 (45%), Positives = 106/149 (71%), Gaps = 1/149 (0%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            ++L  CL+ F +EE L  +D WYCP+CKE R+ASKK DLW+ P++LV+HLKRFS +   +
Sbjct: 1291 IALDDCLDEFEKEEILSEQDTWYCPRCKEHRRASKKFDLWKTPDILVVHLKRFSSTGWRR 1350

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRW 799
             KL+  V+FP+   +LT+ V +K   ++++Y+L A+ +H+GG+G GHYTA  K   + +W
Sbjct: 1351 DKLDILVDFPVEGLDLTRRVIDKEDGKQEVYDLIAVDDHWGGLGGGHYTAFAKNFVDGQW 1410

Query: 800  YNFDDSHISPINEDD-VKSAAAYVLFYRR 827
            Y ++D+ +S + +   V S+AAY+LFYRR
Sbjct: 1411 YEYNDAQVSKLTDTSRVVSSAAYLLFYRR 1439



 Score =  135 bits (341), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 97/305 (31%), Positives = 139/305 (45%), Gaps = 60/305 (19%)

Query: 233 ASKGTSRNHSSEI--STSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSA 290
           AS+G+S + +++   +TS   + A     T G S   + G ++G  GL NLGNTC+MNSA
Sbjct: 564 ASRGSSTSLAAQTRGNTSGRSSPAFQGPQTRGRSQHKS-GRTIGCVGLQNLGNTCYMNSA 622

Query: 291 IQCLVHTPEFARYF-REDYRREINWQNPL------------------------------- 318
           +QC+    E  +YF   +  +EIN  NPL                               
Sbjct: 623 LQCVRSVEELTKYFLTHEAHKEINPDNPLSHNGDVAAAYGRLLEEIYKDPAPLSVAPRHF 682

Query: 319 -GMV----------------ELLAFLLDGLHEDLNRVKHKPYIKSKDA------DGRPDE 355
            G++                E L FLLDGL EDLNR+K KPYI+  D+      +     
Sbjct: 683 KGIIGRYAPAFSGYGQQDSQEFLGFLLDGLQEDLNRIKKKPYIEKPDSTDDMINNPAAVR 742

Query: 356 EVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTM 415
           E+A + W     R+DS+I D+  G YKST+VCPVC+KVS+TFDPF  L+LPL      + 
Sbjct: 743 EMAAKVWDITKKRDDSVIADLFTGMYKSTVVCPVCDKVSITFDPFNNLTLPLPVANVWSR 802

Query: 416 TVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLD 475
            V  F  + +  P    V + K+   R L Q +     +         E Q    + + D
Sbjct: 803 PVKYFPLNDA--PVMIVVDLDKNSSIRALKQFIAARVGVPPERLFAAEEFQAKFFKLYDD 860

Query: 476 DPLIS 480
              +S
Sbjct: 861 GAAVS 865


>gi|344258660|gb|EGW14764.1| Ubiquitin carboxyl-terminal hydrolase 11 [Cricetulus griseus]
          Length = 447

 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 83/194 (42%), Positives = 121/194 (62%), Gaps = 7/194 (3%)

Query: 638 TSIVVYVDWSQKLLEKYNTHFLENLLEVF-KNGPVTKKARTEPLSLYTCLEAFLREEPLV 696
           T   + +DW  ++  +Y   + E   E + K+  V    +  P+ L  C++ F   E L 
Sbjct: 224 TQPYIAMDWEPEMKRRY---YDEVEAEGYVKHDCVGYMLKKSPVQLQECIKLFTTVETLE 280

Query: 697 PEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLT 756
            E+ WYC  CK+ + A+KKLDLW LPEVL+IHLKRFS+S+  + KL+T V FPI D + +
Sbjct: 281 KENPWYCSSCKQHQLATKKLDLWMLPEVLIIHLKRFSFSKFSREKLDTLVQFPIRDLDFS 340

Query: 757 KYVAN-KNSSRRQL--YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINED 813
           ++V   KN S   +  Y+L A++NHYGGM  GHYT      D  +W+ FDD+ +SP+NE+
Sbjct: 341 EFVIKPKNESTPDMYKYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYFDDNSVSPVNEN 400

Query: 814 DVKSAAAYVLFYRR 827
            ++S AAYVLFY+R
Sbjct: 401 QIESKAAYVLFYQR 414


>gi|385303118|gb|EIF47212.1| ubiquitin carboxyl-terminal hydrolase [Dekkera bruxellensis AWRI1499]
          Length = 1196

 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 67/148 (45%), Positives = 103/148 (69%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            ++L  CL+ F R E L   D+WYCP C++ +QA+KK+++W +P+VL IHLKRF  SRS  
Sbjct: 1002 ITLDDCLQLFSRPEILGENDLWYCPHCQKHQQATKKIEIWSVPDVLAIHLKRFESSRSFS 1061

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRW 799
             K++  V FPI   +++KYVA++ + +  +Y+L A+ NH+GG+G GHYTA+++   +  W
Sbjct: 1062 DKIDATVEFPIEGLDMSKYVASEKTHQAMVYDLCAVDNHFGGIGGGHYTAYVRNFVDGEW 1121

Query: 800  YNFDDSHISPINEDDVKSAAAYVLFYRR 827
            Y +DDS +SP +  D    +AY+LFYRR
Sbjct: 1122 YYYDDSRVSPADPLDAIRGSAYLLFYRR 1149



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 106/356 (29%), Positives = 156/356 (43%), Gaps = 83/356 (23%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARY------------------------------ 303
           G  GL+NLGNTC+MNSA+QC+ H PE   Y                              
Sbjct: 338 GKVGLVNLGNTCYMNSALQCIAHVPELTYYFLYGFYKKEINRENPLGKKGKLAEAYASLI 397

Query: 304 ---------------FRE-----DYRREINWQNPL-------GMVELLAFLLDGLHEDLN 336
                          +RE     D+R  I   N +          E L FLLDGLHEDLN
Sbjct: 398 RHLFDKRMLNNXGSGYRESFSPRDFRYTIGVFNSMFSDYRQQDSQEFLTFLLDGLHEDLN 457

Query: 337 RVKHKPYIKSKD-ADGRPD--EEV---ADEYWANHIARNDSIIVDVCQGQYKSTLVCPVC 390
           RV  KPYI+  +  +G+ +  EEV   AD+ W  H  RNDS+I+D+  GQYKSTL+CP C
Sbjct: 458 RVLKKPYIEKPELPEGKFENKEEVCKLADDCWIAHKRRNDSVIIDLFVGQYKSTLICPEC 517

Query: 391 NKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGN 450
              S+TFDP+  L+LPL  T   T  + +    G   P    V +P+     DL   +  
Sbjct: 518 QHXSLTFDPYNDLTLPLPITRKWTHKLKILPEXGX--PYLXEVELPRSATFYDLKAYVSK 575

Query: 451 ICSLKQSEELKVAEIQNHSIQRFLDD-------PLISLSTIKDDDHLAAYRV---PKLVK 500
           + +   +E + +   Q+   + + D+       P+  L  I  +D +  Y +   P    
Sbjct: 576 MTTFPMNELICIEVFQSQVYKNYEDEDADTQYLPIYEL--INPEDDIWFYHIKNGPGDAV 633

Query: 501 KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLS 556
             VF  +   ++    G A      KA+G P   +++ ++  S G I+  ++   S
Sbjct: 634 VPVFSTIGPSVEXARTGKA------KAFGIPFFITLTEEERNSYGAIRLKLEERYS 683


>gi|50546843|ref|XP_500891.1| YALI0B14597p [Yarrowia lipolytica]
 gi|49646757|emb|CAG83142.1| YALI0B14597p [Yarrowia lipolytica CLIB122]
          Length = 1449

 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 84/218 (38%), Positives = 128/218 (58%), Gaps = 14/218 (6%)

Query: 624  SVEGDKTIRIPSSSTSIVVYV-----DW----SQKLLEKYNTHFLENLLEVFKNGPVTKK 674
            SV+G  ++  P + +  V +      DW    + K L  Y++       +V       + 
Sbjct: 1036 SVDGHASLPSPPAPSHFVTHTEGIVCDWQGDTAAKYLHDYDSLATSLETKVDPKLEAVRA 1095

Query: 675  ARTEP----LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLK 730
            AR +     + L  CL+ F   E L  +D+WYCP CK+ RQA+KK++LW+ PE+LVIHLK
Sbjct: 1096 ARADKSNQGIDLSECLDLFSASEVLSDDDLWYCPVCKDFRQATKKIELWKCPEILVIHLK 1155

Query: 731  RFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQL-YELYALTNHYGGMGSGHYTA 789
            RFS SR+ + K+   V+FPI   +LT+ V    +S   L Y+L  + NH GG+G GHYTA
Sbjct: 1156 RFSSSRNFRDKISEVVHFPIEGLDLTERVGEAKASDSPLIYDLIGVDNHMGGLGGGHYTA 1215

Query: 790  HIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
              K   + +WY+++DS +SPI+E+ + +A AY+LFY+R
Sbjct: 1216 FAKNFVDGKWYHYNDSSVSPISENQLVTANAYLLFYKR 1253



 Score =  144 bits (364), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/258 (36%), Positives = 123/258 (47%), Gaps = 57/258 (22%)

Query: 248 SPNLA-SARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE 306
           +PNL  SA+++   +  S   T G ++G TGL NLGNTC+MNSA+QCLVH PE   YF  
Sbjct: 496 TPNLIISAKEARGYIEDS--LTAGPTMGTTGLSNLGNTCYMNSALQCLVHVPEVVEYFLS 553

Query: 307 DY-RREINWQNPLGM--------------------------------------------- 320
            Y   EIN  NP+G                                              
Sbjct: 554 GYYESEINKDNPIGKNGDVALAFAELVRRVYLDKSSTYAPRQFKSIVGEYGPQFAGYGQQ 613

Query: 321 --VELLAFLLDGLHEDLNRVKHKPYIKSKDAD----GRPDE--EVADEYWANHIARNDSI 372
              E LA+LLD LHEDLNR+  KP     + D    G P E   VA E W  H  RNDS 
Sbjct: 614 DSQEFLAYLLDSLHEDLNRILQKPATTKPELDPERAGDPLEVARVAVESWDVHRLRNDSP 673

Query: 373 IVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYT 432
           I+D+  G YKST+VCPV  + S+TFDPF  L+LPL    + +        D S  P    
Sbjct: 674 ILDLFTGMYKSTVVCPVSQQASITFDPFSDLTLPLPVDDSWSKDFIFVPYDTSQQPCIIP 733

Query: 433 VTVPKHGRCRDLIQVLGN 450
           + + KH R ++L Q++ +
Sbjct: 734 IELKKHSRFQELRQLVAS 751


>gi|402086482|gb|EJT81380.1| ubiquitin specific peptidase 11 [Gaeumannomyces graminis var. tritici
            R3-111a-1]
          Length = 1532

 Score =  160 bits (405), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 67/153 (43%), Positives = 109/153 (71%), Gaps = 1/153 (0%)

Query: 676  RTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYS 735
            R   ++L  CL+ F ++E L  +DMWYCP+CKE R+A KK DLW+ P++LV+HLKRFS S
Sbjct: 1140 RKNGITLDDCLDEFEKQEILSEQDMWYCPRCKEHRRAKKKFDLWKTPDILVVHLKRFSSS 1199

Query: 736  RSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLD 795
               + KL+  V+FPI   +LT+ V ++ ++++++Y+L A+ +H+GG+G GHYTA  K   
Sbjct: 1200 GWRRDKLDILVDFPIEGLDLTRRVIDRQTNKQEIYDLIAIDDHWGGLGGGHYTAFAKNFI 1259

Query: 796  ENRWYNFDDSHISPINE-DDVKSAAAYVLFYRR 827
            +N WY+++DS ++   +   + +++AY+LFYRR
Sbjct: 1260 DNEWYDYNDSSVTKQKDLSRMVTSSAYLLFYRR 1292



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 84/218 (38%), Positives = 106/218 (48%), Gaps = 65/218 (29%)

Query: 252 ASARDSDNTLGSSGVTTRGAS-------VGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF 304
           AS R S   +G    TTRG +        G  GL NLGNTC+MNSA+QC+    E  +YF
Sbjct: 437 ASGRSSPAPIGP---TTRGRAKLKSGRTTGCVGLSNLGNTCYMNSALQCVRSVEELTKYF 493

Query: 305 R-EDYRREINWQNPLG------MV------------------------------------ 321
              +  +EIN  NPL       MV                                    
Sbjct: 494 LVGEAEKEINTDNPLAHNGDVAMVYYSLLKEMYKDSASASFSPRQFKNVIGRYAPAFSGY 553

Query: 322 ------ELLAFLLDGLHEDLNRVKHKPYIKSKDAD----GRPD--EEVADEYWANHIARN 369
                 E + FLLD L EDL+R+K KPYI+  D+       PD  +E+AD+ W     R+
Sbjct: 554 GQQDSQEFVGFLLDALQEDLSRIKKKPYIEKPDSTDDMINNPDAIKEMADKVWDITKKRD 613

Query: 370 DSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPL 407
           DS+I D+  G YKSTLVCP C+KVS+TFDPF  L+LPL
Sbjct: 614 DSVIADLFTGMYKSTLVCPFCDKVSITFDPFNNLTLPL 651


>gi|392579018|gb|EIW72145.1| hypothetical protein TREMEDRAFT_36466 [Tremella mesenterica DSM 1558]
          Length = 1317

 Score =  160 bits (405), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 76/206 (36%), Positives = 123/206 (59%), Gaps = 20/206 (9%)

Query: 642  VYVDWSQKLLEKY-NTHFL-ENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPED 699
            ++ +W+ K   +Y +T F  E +++        K+   + + +  CL+ F +EE L  +D
Sbjct: 953  IFCEWTHKRFNEYFDTAFKPEEIIDPQIQKEAEKRKAGKNIGIEDCLDEFSKEETLGQDD 1012

Query: 700  MWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYV 759
            +WYCPQCK+ + A+KKL++++ P++LVI +KRF  SR +  KL+  V+FPI   +L + +
Sbjct: 1013 LWYCPQCKKHQAATKKLEIYKAPDILVICIKRFGNSRRLSDKLDHMVHFPIDGLDLEERI 1072

Query: 760  ANKNSSRR------------------QLYELYALTNHYGGMGSGHYTAHIKLLDENRWYN 801
                 ++R                   +Y+LYA+ NH+GGMG GHYTA  +   + +WYN
Sbjct: 1073 GECQVAKRLDLSTEQAKEYGMRVDEPMIYDLYAVDNHFGGMGGGHYTAFCRNRVDGKWYN 1132

Query: 802  FDDSHISPINEDDVKSAAAYVLFYRR 827
            +DD+ +SP NE  V+S AAY+LFYRR
Sbjct: 1133 YDDTRVSPANEAAVQSRAAYLLFYRR 1158



 Score =  156 bits (394), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 93/243 (38%), Positives = 120/243 (49%), Gaps = 60/243 (24%)

Query: 269 RGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM------- 320
           R    GL GL NLGNTCFMNSA+QCL +T E ++YF    YR E+N  NPLGM       
Sbjct: 392 RSKGKGLVGLHNLGNTCFMNSAVQCLSNTQELSQYFLSGVYRDELNPDNPLGMHGQVAEA 451

Query: 321 ------------------------------------------VELLAFLLDGLHEDLNRV 338
                                                      E +AFLLDGLHEDLNR+
Sbjct: 452 FGGVIEALWTLSGPHASFSPRQLKSTTSRFAPQFAGYGQHDTQEFIAFLLDGLHEDLNRI 511

Query: 339 KHKPYIKSKDADGRPD------EEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNK 392
           K KPYI+    D +P        E+  E W  +  RNDS+IVD+ QGQ +STLVCP C+K
Sbjct: 512 KKKPYIEK--PDWKPGGGNVQLAELGKECWEGYKQRNDSVIVDLFQGQLQSTLVCPECHK 569

Query: 393 VSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNI- 451
            S+T DPFMYL++PL    TR + +     D    P    + +P++     + + LG + 
Sbjct: 570 ESITMDPFMYLTVPLPIAQTRQIKLLFIPRDVEQSPINIRLLIPQNASFMQVKEKLGQLV 629

Query: 452 -CS 453
            CS
Sbjct: 630 KCS 632


>gi|346971145|gb|EGY14597.1| ubiquitin carboxyl-terminal hydrolase [Verticillium dahliae VdLs.17]
          Length = 1451

 Score =  160 bits (404), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 68/152 (44%), Positives = 103/152 (67%)

Query: 676  RTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYS 735
            R++ ++L  CL+ F + E L  +D WYCP+CKE R+ASKK DLW+ P++LV+HLKRFS S
Sbjct: 1069 RSKGITLEECLDEFEKAEILSEQDTWYCPRCKEHRRASKKFDLWKTPDILVVHLKRFSSS 1128

Query: 736  RSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLD 795
               + KL+  V+FPI   +L   V ++   + ++Y+L A+  H+GG+G GHYTA  K   
Sbjct: 1129 GYRRDKLDVLVDFPIEGLDLRTRVLHQEDGKEEVYDLCAVDEHFGGLGGGHYTAWAKNFV 1188

Query: 796  ENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            +N+WY+F+D+ +S    +   + AAY+LFYRR
Sbjct: 1189 DNQWYHFNDTSVSAGKAESSVTKAAYLLFYRR 1220



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/272 (36%), Positives = 128/272 (47%), Gaps = 59/272 (21%)

Query: 221 SKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLN 280
           +KS  S   G   +   S N+S   S +P   SAR    T G +     G SVG  GL N
Sbjct: 359 AKSIASRGVGNGKTTQASGNNSGRNSPAP---SARSGPITRGRTQQKRSGRSVGAVGLQN 415

Query: 281 LGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLG-------------------- 319
           LGNTC+MNSA+QC+    E  +YF   +Y +E+N  NPLG                    
Sbjct: 416 LGNTCYMNSALQCVRSVEELTKYFLTSEYEKELNRDNPLGYDGQVAITYGQLLKEIYRDS 475

Query: 320 ---------------------------MVELLAFLLDGLHEDLNRVKHKPYIKSKDADGR 352
                                        E L FLLDGL EDL+R+K KPYI+  D+   
Sbjct: 476 RGAVSPREFKVTIGRCRSAFSGWGQQDTQEFLGFLLDGLQEDLSRIKKKPYIEKPDSTDE 535

Query: 353 --PDEE----VADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLP 406
              +EE    +A+E W     R+DS+I D+  G YKSTL CPVC+KVS+TFDPF  L+LP
Sbjct: 536 MIGNEEAIRKMAEEVWDITRKRDDSVIADLFTGMYKSTLKCPVCDKVSITFDPFNNLTLP 595

Query: 407 LQATTTRTMTVTVFTSDGSALPSTYTVTVPKH 438
           L      + +V  F  +    P    V +PKH
Sbjct: 596 LPIEDLWSASVKFFPLNDR--PVLVEVELPKH 625


>gi|302410611|ref|XP_003003139.1| ubiquitin carboxyl-terminal hydrolase [Verticillium albo-atrum
            VaMs.102]
 gi|261358163|gb|EEY20591.1| ubiquitin carboxyl-terminal hydrolase [Verticillium albo-atrum
            VaMs.102]
          Length = 1870

 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 68/152 (44%), Positives = 103/152 (67%)

Query: 676  RTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYS 735
            R++ ++L  CL+ F + E L  +D WYCP+CKE R+ASKK DLW+ P++LV+HLKRFS S
Sbjct: 1488 RSKGITLEECLDEFEKAEILSEQDTWYCPRCKEHRRASKKFDLWKTPDILVVHLKRFSSS 1547

Query: 736  RSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLD 795
               + KL+  V+FPI   +L   V ++   + ++Y+L A+  H+GG+G GHYTA  K   
Sbjct: 1548 GYRRDKLDVLVDFPIEGLDLRTRVLHQEDGKEEMYDLCAVDEHFGGLGGGHYTAWAKNFV 1607

Query: 796  ENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            +N+WY+F+D+ +S    +   + AAY+LFYRR
Sbjct: 1608 DNQWYHFNDTSVSAGKAESSVTKAAYLLFYRR 1639



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/310 (32%), Positives = 142/310 (45%), Gaps = 59/310 (19%)

Query: 221  SKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLN 280
            +KS  S   G   +  +S N+S   S +P   SAR    T G +     G SVG  GL N
Sbjct: 777  AKSIASRGVGNGKTTQSSGNNSGRNSPAP---SARSGPITRGRTQQKRSGRSVGAVGLQN 833

Query: 281  LGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLG-------------------- 319
            LGNTC+MNSA+QC+    E  +YF   +Y +E+N  NPLG                    
Sbjct: 834  LGNTCYMNSALQCVRSVEELTKYFLTSEYEKELNRDNPLGYDGQVAITYGQLLKEIYRDS 893

Query: 320  ---------------------------MVELLAFLLDGLHEDLNRVKHKPYIKSKDADGR 352
                                         E L FLLDGL EDL+R+K KPYI+  D+   
Sbjct: 894  RGAVSPREFKVTIGRCRSAFSGWGQQDTQEFLGFLLDGLQEDLSRIKKKPYIEKPDSTDE 953

Query: 353  --PDEE----VADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLP 406
               +EE    +A+E W     R+DS+I D+  G YKSTL CPVC+KVS+TFDPF  L+LP
Sbjct: 954  MIGNEEAIRKMAEEVWDITRKRDDSVIADLFTGMYKSTLKCPVCDKVSITFDPFNNLTLP 1013

Query: 407  LQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQ 466
            L      + +V  F  +    P    V +PKH     L + + +   +  +  +   E +
Sbjct: 1014 LPIEDLWSASVKFFPLNDR--PVLVEVELPKHSAVELLKKAISDRTGVPVNRLIGAEEFK 1071

Query: 467  NHSIQRFLDD 476
                + + D+
Sbjct: 1072 GKFFKIYSDN 1081


>gi|406696920|gb|EKD00191.1| ubiquitin carboxyl-terminal hydrolase 12 [Trichosporon asahii var.
           asahii CBS 8904]
          Length = 1329

 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 119/353 (33%), Positives = 155/353 (43%), Gaps = 87/353 (24%)

Query: 167 LMNDMDRTLDDANIQMDQDILVEVLDN--VNGTNCKSSIQDNGFAEKKASSVLVEPSKSS 224
           +M+  D+TL D       DI++EV  +      +   +   NG A +K   +  +P+  S
Sbjct: 317 MMSGNDKTLADGGFADGDDIVLEVSSSSSAGAVDWPLTADANGNATEKLQPLFGKPAFYS 376

Query: 225 LSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNT 284
            + A G S S   + N     S S                   TR    GL GL NLGNT
Sbjct: 377 GNSAAGSSTSSLAAFNKPQTRSQS------------------RTRSGH-GLVGLNNLGNT 417

Query: 285 CFMNSAIQCLVHTPEFARYFRED-------------YRREINWQNPLGM----------- 320
           CFM SA QCL +T   A YF  +             YR E+N  NPLGM           
Sbjct: 418 CFMASATQCLSNTSVLADYFLCEFSLGALKLISAGVYREELNPDNPLGMHGQVAEAFGET 477

Query: 321 -------------------------------------VELLAFLLDGLHEDLNRVKHKPY 343
                                                 E LAFLLDGLHEDLNR+K KPY
Sbjct: 478 LEALWTSPAHSSFSPRRLKSTCSRFAPQFAGYGQHDTQEFLAFLLDGLHEDLNRIKKKPY 537

Query: 344 IKSKD-ADGRPDEEVAD---EYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDP 399
           I+  D   G  D E+A+   E W  +  RNDS+IVD+ QGQ +STLVCP C+K S+T DP
Sbjct: 538 IEKPDWKPGGGDRELAELGKECWEGYKKRNDSVIVDLFQGQLQSTLVCPECHKESITMDP 597

Query: 400 FMYLSLPLQATTTRTMTVTVFTSDGSALP-STYTVTVPKHGRCRDLIQVLGNI 451
           FMYL++P+  T TRT     F  D    P +   + VP +     + + LG +
Sbjct: 598 FMYLTVPMPITQTRTFKCIYFPKDTDLAPVNVQLLVVPANASFSTVKEKLGQL 650



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 75/213 (35%), Positives = 125/213 (58%), Gaps = 26/213 (12%)

Query: 641  VVYVDWSQKLLEKYNTHFLENLL---EVFKNGPVTK----KARTEPLSLYTCLEAFLREE 693
             ++V W     E++     E LL   E+  +  + K    K R   ++L  CL+ F +EE
Sbjct: 954  ALFVQWKNSKFEEFFEPRREQLLRGLELVVDPAIAKDAEKKGRGRAITLDDCLDEFSKEE 1013

Query: 694  PLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDF 753
             L  +D+WYCP CK+ + A+KKL++++ P++LVI +KRF  +R+++ KL+  V+FP    
Sbjct: 1014 TLGQDDLWYCPVCKKHQPATKKLEIYKAPDILVICIKRFGSARTLRDKLDHMVSFPNEGL 1073

Query: 754  NL-------------------TKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
            +L                    K+   ++S+   +Y+LYA+ NH+GG+G GHYTA  +  
Sbjct: 1074 DLDERIGERRITQSLHLTPEEAKHYGIEHSTEPFIYDLYAVDNHFGGLGGGHYTAFCRNK 1133

Query: 795  DENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            D+++WYN+DDS +S  + + V+S AAY+LFY+R
Sbjct: 1134 DDHQWYNYDDSRVSKASAEGVQSRAAYLLFYKR 1166


>gi|320166287|gb|EFW43186.1| ubiquitin specific peptidase 11 [Capsaspora owczarzaki ATCC 30864]
          Length = 1643

 Score =  159 bits (403), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 97/270 (35%), Positives = 133/270 (49%), Gaps = 53/270 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV----------- 321
           GL GL NLGNTCFMNS +QCL +      YF  + +   IN  NPLG+            
Sbjct: 434 GLAGLRNLGNTCFMNSGLQCLSNIAPLTSYFVSNAFVDHINRDNPLGLKGKMADEYGALI 493

Query: 322 ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E LAFLLDGLHEDLNRV  KPY++
Sbjct: 494 RELWSGKFDCVAPNSFKKALGSFATQFAGYSQQDSQEFLAFLLDGLHEDLNRVLKKPYVE 553

Query: 346 SKDADGRPD-EEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLS 404
             ++    + EEVA E W  H+ RN S++VD+ QGQ+KST++C  CNKVS+TFDPFMY+S
Sbjct: 554 KVESTSTDNLEEVAQEAWRRHLLRNQSVVVDLFQGQFKSTVICTTCNKVSITFDPFMYVS 613

Query: 405 LPLQATTTRTMTVTVFTSDGSALPST-YTVTVPKHGRCRDLIQVLGNICSLKQSEELKVA 463
           +P+  +  R + VT F    + LP     VTVPK      L   +G +  +  S  + V 
Sbjct: 614 VPVPVSNERVI-VTHFVPRDTQLPVVRMNVTVPKTANLPILRAKMGEMLKVPSSSLVVVD 672

Query: 464 EIQNHSIQRFLDDPLISLSTIKDDDHLAAY 493
             +++  +   DD  + +  I + D +  Y
Sbjct: 673 HFKSYVFRVLADD--MDVREISESDEIVVY 700



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 68/152 (44%), Positives = 97/152 (63%), Gaps = 4/152 (2%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            L+L  C  AF  EE L P D W+CP CK+ + A+K+  LW+LP+V+V+HLKRF YS+S +
Sbjct: 1181 LTLEKCFAAFTTEENLGPNDHWFCPNCKDLQPAAKQFHLWKLPDVVVVHLKRFQYSKSWR 1240

Query: 740  HKLETFVNFPIHDFNLTKYVANK----NSSRRQLYELYALTNHYGGMGSGHYTAHIKLLD 795
             K+E  +++P+   NL  +VA +    N     LY+L  + NH+GGM  GHYTA      
Sbjct: 1241 DKIEANIHYPMRGLNLAPFVAAEAQLHNEPDTMLYDLVGVVNHFGGMSGGHYTAFALHAP 1300

Query: 796  ENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             N+WYN++DSH S     +V ++ AYVLFY+R
Sbjct: 1301 TNQWYNYNDSHCSKAQPHEVVNSEAYVLFYQR 1332


>gi|408388251|gb|EKJ67937.1| hypothetical protein FPSE_11748 [Fusarium pseudograminearum CS3096]
          Length = 1673

 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 77/156 (49%), Positives = 108/156 (69%), Gaps = 1/156 (0%)

Query: 673  KKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF 732
            K  RT+ ++L  CL+ F R E L  +DMWYCP+CKE R+ASKK DLW+ P++LV HLKRF
Sbjct: 1300 KHRRTQGITLDECLDEFERAEVLSEQDMWYCPRCKEHRRASKKFDLWKSPDILVAHLKRF 1359

Query: 733  SYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIK 792
            S S   + KL+  V+FPI   +LT  V  K   + ++Y+L A+ +HYGG+G GHYTA+ K
Sbjct: 1360 SSSGYRRDKLDVMVDFPIEGLDLTSRVIQKEDGKDEIYDLIAVDDHYGGLGGGHYTAYAK 1419

Query: 793  LLDENRWYNFDDSHISPINED-DVKSAAAYVLFYRR 827
               + RWYN++DS  SP+++     ++AAY+LFYRR
Sbjct: 1420 NFVDGRWYNYNDSSASPVSDPASCITSAAYLLFYRR 1455



 Score =  135 bits (340), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/275 (33%), Positives = 125/275 (45%), Gaps = 64/275 (23%)

Query: 236 GTSRNHSSEISTSPNLASARDSD-NTLGSSGVTTRGA-------SVGLTGLLNLGNTCFM 287
           G S  +   I T   +AS+  S  ++    GV TRG        S+G+ GL NLGNTC+M
Sbjct: 601 GKSPPNGLAIPTRSGMASSNASGRSSPAPGGVLTRGRMGKKSGRSIGVVGLQNLGNTCYM 660

Query: 288 NSAIQCLVHTPEFARYFRED-YRREINWQNPLGM-------------------------- 320
           NSA+QC+    E  +YF  D +  E+N  NPLG                           
Sbjct: 661 NSALQCVRSVEELTKYFLTDEFVDEVNKTNPLGYNGKVATTYGHLLKEIYSENRGSVTPR 720

Query: 321 ---------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDAD----GRPD- 354
                                 E L FLLD L EDL+RVK KPYI+  D+       P+ 
Sbjct: 721 DFKNTIGRCRSTFSGYGQQDSQEFLGFLLDALQEDLSRVKKKPYIEKPDSTDDMINNPEA 780

Query: 355 -EEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTR 413
            +E+AD+ W     R+DS+I D+  G YKSTL CP C K+S+TFDPF  L+LP+      
Sbjct: 781 IKEMADKVWDITRCRDDSVIADLFTGLYKSTLKCPECGKISITFDPFNNLTLPIPVEDVW 840

Query: 414 TMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVL 448
           T  +     + +  P    V +PKH     L Q +
Sbjct: 841 TAKIKFLPLNDA--PVMIEVELPKHSAIEQLKQFI 873


>gi|46125069|ref|XP_387088.1| hypothetical protein FG06912.1 [Gibberella zeae PH-1]
          Length = 1618

 Score =  159 bits (402), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 77/156 (49%), Positives = 108/156 (69%), Gaps = 1/156 (0%)

Query: 673  KKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF 732
            K  RT+ ++L  CL+ F R E L  +DMWYCP+CKE R+ASKK DLW+ P++LV HLKRF
Sbjct: 1245 KHRRTQGITLDECLDEFERAEVLSEQDMWYCPRCKEHRRASKKFDLWKSPDILVAHLKRF 1304

Query: 733  SYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIK 792
            S S   + KL+  V+FPI   +LT  V  K   + ++Y+L A+ +HYGG+G GHYTA+ K
Sbjct: 1305 SSSGYRRDKLDVMVDFPIEGLDLTSRVIQKEDGKDEIYDLIAVDDHYGGLGGGHYTAYAK 1364

Query: 793  LLDENRWYNFDDSHISPINED-DVKSAAAYVLFYRR 827
               + RWYN++DS  SP+++     ++AAY+LFYRR
Sbjct: 1365 NFVDGRWYNYNDSSASPVSDPASCITSAAYLLFYRR 1400



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/275 (33%), Positives = 125/275 (45%), Gaps = 64/275 (23%)

Query: 236 GTSRNHSSEISTSPNLASARDSD-NTLGSSGVTTRGA-------SVGLTGLLNLGNTCFM 287
           G S  +   I T   +AS+  S  ++    GV TRG        S+G+ GL NLGNTC+M
Sbjct: 546 GKSPPNGLAIPTRSGMASSNVSGRSSPAPGGVLTRGRMGKKSGRSIGVVGLQNLGNTCYM 605

Query: 288 NSAIQCLVHTPEFARYFRED-YRREINWQNPLGM-------------------------- 320
           NSA+QC+    E  +YF  D +  E+N  NPLG                           
Sbjct: 606 NSALQCVRSVEELTKYFLTDEFVDEVNKTNPLGYNGKVATTYGHLLKEIYSENRGSVTPR 665

Query: 321 ---------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDAD----GRPD- 354
                                 E L FLLD L EDL+RVK KPYI+  D+       P+ 
Sbjct: 666 DFKNTIGRCRSTFSGYGQQDSQEFLGFLLDALQEDLSRVKKKPYIEKPDSTDDMINNPEA 725

Query: 355 -EEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTR 413
            +E+AD+ W     R+DS+I D+  G YKSTL CP C K+S+TFDPF  L+LP+      
Sbjct: 726 IKEMADKVWDITRCRDDSVIADLFTGLYKSTLKCPECGKISITFDPFNNLTLPIPVEDVW 785

Query: 414 TMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVL 448
           T  +     + +  P    V +PKH     L Q +
Sbjct: 786 TAKIKFLPLNDA--PVMIEVELPKHSAIEQLKQFI 818


>gi|350290282|gb|EGZ71496.1| UCH-domain-containing protein [Neurospora tetrasperma FGSC 2509]
          Length = 1747

 Score =  158 bits (400), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/150 (48%), Positives = 104/150 (69%), Gaps = 2/150 (1%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            +SL  CL  F +EE L  +D WYCP+CKE R+ASKK DLW+ P++LV+HLKRFS     +
Sbjct: 1337 ISLDDCLAEFEKEEILSEQDTWYCPRCKEHRRASKKFDLWKTPDILVVHLKRFSSVGWRR 1396

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRW 799
             KL+  V+FPI   +LT+ V +K   ++++Y+L A+ +H+GG+G GHYTA  K   +++W
Sbjct: 1397 DKLDVLVDFPIEGLDLTERVIDKEDGKQEIYDLIAVDDHWGGLGGGHYTAFAKNFVDDQW 1456

Query: 800  YNFD-DSHISPINE-DDVKSAAAYVLFYRR 827
            Y F+ DS +S + +   V S AAY+LFYRR
Sbjct: 1457 YEFNVDSSVSKVTDTSKVVSPAAYLLFYRR 1486



 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 81/206 (39%), Positives = 105/206 (50%), Gaps = 55/206 (26%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPL---------- 318
           G + G  GL NLGNTC+MNSA+QCL    E  +YF   + ++EIN  NPL          
Sbjct: 664 GRTPGCVGLQNLGNTCYMNSALQCLRSVEELTKYFLTHEAKKEINPDNPLSHNGDVAMAY 723

Query: 319 ----------------------GMV----------------ELLAFLLDGLHEDLNRVKH 340
                                 G+V                E L FLLDGL EDLNR+K 
Sbjct: 724 MRLLDEIYKNPAPNSVAPRHFKGIVGRYAPAFSGYGQQDSQEFLGFLLDGLQEDLNRIKK 783

Query: 341 KPYIKSKDAD----GRPD--EEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVS 394
           KPYI+  D+     G P   +E+A++ W     R+DSII D+  G YKSTL CPVC+K+S
Sbjct: 784 KPYIEKPDSTDDMIGNPAAIKEMAEKVWDITKKRDDSIIADLFTGLYKSTLHCPVCDKIS 843

Query: 395 VTFDPFMYLSLPLQATTTRTMTVTVF 420
           +TFDPF  L+LPL  +   + TV  +
Sbjct: 844 ITFDPFNNLTLPLPMSNVWSRTVKYY 869


>gi|116207694|ref|XP_001229656.1| hypothetical protein CHGG_03140 [Chaetomium globosum CBS 148.51]
 gi|88183737|gb|EAQ91205.1| hypothetical protein CHGG_03140 [Chaetomium globosum CBS 148.51]
          Length = 1550

 Score =  158 bits (400), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 68/149 (45%), Positives = 103/149 (69%), Gaps = 1/149 (0%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            ++L  CL+ F +EE L  +D WYCP+CKE R+ASKK DLW+ P++LV+HLKRFS S   +
Sbjct: 1121 IALDDCLDEFEKEEILSEQDTWYCPRCKEHRRASKKFDLWKTPDILVVHLKRFSSSGWRR 1180

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRW 799
             KL+  V+FP+   +LTK V +K   + ++Y+L A+ +H+GG+G GHYTA  K   +  W
Sbjct: 1181 DKLDILVDFPVEALDLTKRVIDKEDGKEEIYDLIAVDDHWGGLGGGHYTAFAKNFVDGEW 1240

Query: 800  YNFDDSHISPINED-DVKSAAAYVLFYRR 827
            Y ++D+ ++   +   V ++AAY+LFYRR
Sbjct: 1241 YEYNDATVTKQRDTARVVTSAAYLLFYRR 1269



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 106/328 (32%), Positives = 142/328 (43%), Gaps = 106/328 (32%)

Query: 158 DYYGHRKHALMN---DMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKAS 214
           +Y G +  AL+    D    LD+   Q+D+D  V        T   ++I+D GF  K  S
Sbjct: 355 NYNGRKSLALVGLAVDQTLVLDE---QIDRDAHVS-------TYRGTAIKDKGFTNKDTS 404

Query: 215 SVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGAS-- 272
           + L+              A +G+    SS                     GV TRG +  
Sbjct: 405 NSLI--------------ALRGSGSGRSSP-----------------APQGVLTRGRTQQ 433

Query: 273 -----VGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPL-------- 318
                +G  GL NLGNTC+MNSA+QC+    E  +YF   +  +EIN  NPL        
Sbjct: 434 KSGRTLGCVGLQNLGNTCYMNSALQCVRSVEELTKYFLTHEAHKEINPDNPLSHNGDVAA 493

Query: 319 ------------------------GMV----------------ELLAFLLDGLHEDLNRV 338
                                   G++                E L FLLDGL EDLNR+
Sbjct: 494 AYGRLLEEIYKDPAPGSIAPRNFKGIIGRYAPAFSGYGQQDSQEFLGFLLDGLQEDLNRI 553

Query: 339 KHKPYIKSKDA------DGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNK 392
           K KPYI+  D+      +     E+A + W     R+DS+I D+  G YKSTLVCPVC+K
Sbjct: 554 KKKPYIEKPDSTDDMVNNPAAVREMAAKVWDITKKRDDSVIADLFTGMYKSTLVCPVCDK 613

Query: 393 VSVTFDPFMYLSLPLQATTTRTMTVTVF 420
           VS+TFDPF  L+LPL      T T+  F
Sbjct: 614 VSITFDPFNNLTLPLPVANVWTHTIKFF 641


>gi|242783696|ref|XP_002480238.1| ubiquitin C-terminal hydrolase, putative [Talaromyces stipitatus ATCC
            10500]
 gi|218720385|gb|EED19804.1| ubiquitin C-terminal hydrolase, putative [Talaromyces stipitatus ATCC
            10500]
          Length = 1638

 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 79/153 (51%), Positives = 103/153 (67%), Gaps = 1/153 (0%)

Query: 676  RTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYS 735
            R + LSL  CL+ F REE L   D WYCP+CKE R+ASKK +LW+ P++LVIHLKRFS S
Sbjct: 1288 RKKGLSLDQCLDEFGREEILSENDAWYCPRCKEHRRASKKFELWKTPDILVIHLKRFSAS 1347

Query: 736  RSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLD 795
            R  + K++  V+FPI   +L   VA+       +Y+L+A+ NHYGG+G GHYTA+ K   
Sbjct: 1348 RGFRDKIDELVDFPIEGLDLNGRVASAEPDESLIYDLFAVDNHYGGLGGGHYTAYAKNFL 1407

Query: 796  ENRWYNFDDSHIS-PINEDDVKSAAAYVLFYRR 827
             N W  ++DSH+S  IN   V S AAY+LFYRR
Sbjct: 1408 TNEWNEYNDSHVSKAINPAKVVSTAAYLLFYRR 1440



 Score =  126 bits (316), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 102/326 (31%), Positives = 142/326 (43%), Gaps = 64/326 (19%)

Query: 225 LSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNT 284
           L+I G   A  G ++  S  I+T+    S R +  +    G    G   G TG  NLGNT
Sbjct: 621 LAIPGANRA--GANKVKSKAITTT----SGRTTPVSEPIRGRKKDGRPKGNTGFTNLGNT 674

Query: 285 CFMNSAIQCLVHTPEFARYFREDY-RREINWQNPL---GMV------------------- 321
           C+M SA+QC+    E   YF  DY ++++N  NPL   G V                   
Sbjct: 675 CYMASALQCVRSVEELTLYFLNDYYKKDLNPSNPLSHNGDVAKAYANLLHAVYDESPASF 734

Query: 322 -------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDA------D 350
                                    E + FLLDGL EDLNR++ KPYI+  D+      D
Sbjct: 735 SPKHFKHTIGRYGPAFSGYGQQDSQEFVLFLLDGLQEDLNRIQKKPYIEKPDSTDEMVHD 794

Query: 351 GRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQAT 410
               +  AD  W  + ARNDS+I D+  G YKSTL CPVC+KVS+ FDPF  L+L L   
Sbjct: 795 AVALKGFADRCWEIYKARNDSVITDLFAGMYKSTLHCPVCDKVSIIFDPFNNLTLQLPIE 854

Query: 411 TTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSI 470
              T  +  F       P    V + K+   + L +++         ++L +AEI     
Sbjct: 855 NLWTKDIFFFPL--HKPPVLIDVEIDKNASIKALKELVAQKTGT-DPQKLVMAEIYKSKF 911

Query: 471 QRFLDDP-LISLSTIKDDDHLAAYRV 495
            R  D+   I+ S I   D +  + V
Sbjct: 912 YRLFDNTGTIADSNISAGDDIGIFEV 937


>gi|341897552|gb|EGT53487.1| hypothetical protein CAEBREN_19011 [Caenorhabditis brenneri]
          Length = 902

 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 132/405 (32%), Positives = 185/405 (45%), Gaps = 100/405 (24%)

Query: 65  LLEGRDYILLPQEVWNQLHSWYG-GGPT---LARKVISSGLSQTELAVEVYPLRLQL-LV 119
           L E  DY  +P +V+ +L ++Y    P    + R+V+    S   L +EVYP  + + L 
Sbjct: 95  LAEQVDYTPVPSKVFKRLETFYQVEDPRRDYITRQVVPKNGS---LCLEVYPRIVHVALA 151

Query: 120 MPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLD--- 176
             R   + + +   +T+  L  R  +   L   Q         R + + +D    +D   
Sbjct: 152 RNRDMKADVTLKSDDTMASLRERVITELNLEANQNV-------RFYVMSSDNPELIDTTQ 204

Query: 177 --DANIQMDQDILVEVLDNVNGTNCKSSIQDNG---FAEKKASSVLVEPSKSSLSIAGGW 231
             D+     Q +LV+V             ++NG   F  K A    V+P   +L      
Sbjct: 205 SIDSYFDTVQKVLVDV-------------EENGEFFFRGKNA----VQPQSKTLYGNQAS 247

Query: 232 SASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAI 291
           S+S  +   HS  +S S N AS         + GV TR  + G  GL NLGNTCFM SA 
Sbjct: 248 SSSSSSLGGHS--VSNSYNTASP--------THGVVTR-TTPGACGLSNLGNTCFMASAF 296

Query: 292 QCLVHTPEFARYF-REDYRREINWQNPLGMV----------------------------- 321
           QCL + P    YF  E+Y +++N +NPLG                               
Sbjct: 297 QCLSNIPPLRDYFINEEYLQDLNEENPLGTHGNLAVAVGDLMKGMWSGEYASINPRKFKG 356

Query: 322 ------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGR-PDEEVADEYW 362
                             EL+A++LDGLHEDLNR+K KPYI+  D D + P+ E A + W
Sbjct: 357 IIGQFAPRFNGYSQQDAHELMAYVLDGLHEDLNRIKKKPYIEDNDEDAKLPEAEYAAKSW 416

Query: 363 ANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPL 407
             +  RNDSIIVD   GQ +STL+CPVC K+S+ FDPF YLSLPL
Sbjct: 417 QVYKMRNDSIIVDTLHGQLRSTLICPVCQKISIKFDPFGYLSLPL 461



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 64/149 (42%), Positives = 95/149 (63%), Gaps = 5/149 (3%)

Query: 682 LYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHK 741
           L   L  F ++E L  +D WYCPQCK+  +ASK+LDLW+LPE+L++HLKRF Y++  + K
Sbjct: 702 LEETLNWFTKKEQLGEQDSWYCPQCKKHERASKQLDLWKLPEILILHLKRFQYTKWSREK 761

Query: 742 LETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDE-NRWY 800
           L   V  P+   +LT  VAN N     +Y+L A++ HYG +  GHYTA I   D+  +W+
Sbjct: 762 LTWDVVIPVRGLDLTAKVANPNHE-AAVYDLIAVSRHYGSLSGGHYTA-IGFNDKAQKWF 819

Query: 801 NFDD--SHISPINEDDVKSAAAYVLFYRR 827
           +F+D  S++S    +  +S+  Y+L YRR
Sbjct: 820 DFNDSSSNVSSPPNEPYESSDPYILVYRR 848


>gi|406868122|gb|EKD21159.1| ubiquitin carboxyl-terminal hydrolase [Marssonina brunnea f. sp.
            'multigermtubi' MB_m1]
          Length = 1506

 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 65/155 (41%), Positives = 107/155 (69%), Gaps = 1/155 (0%)

Query: 674  KARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFS 733
            K +   ++L  CL+ F +EE L   D WYCP+CKE ++ASKK +LW+ P++L++HLKRFS
Sbjct: 1108 KRKKNGITLEDCLDEFGKEEILSESDTWYCPRCKEHKRASKKFELWKTPDILIMHLKRFS 1167

Query: 734  YSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKL 793
             S   + KL+  V+FP+ D +L+  V      ++++Y+L+A+ +H+GG+G GHYTA  K 
Sbjct: 1168 SSGWRRDKLDVLVDFPLTDLDLSSRVIESEDGKQEIYDLFAVDDHWGGLGGGHYTAFAKN 1227

Query: 794  LDENRWYNFDDSHISPINE-DDVKSAAAYVLFYRR 827
             D+ +WY ++DS ++ + +   + S++AY+LFYRR
Sbjct: 1228 YDDQQWYEYNDSSVTKVTDLSRIVSSSAYLLFYRR 1262



 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 95/300 (31%), Positives = 130/300 (43%), Gaps = 66/300 (22%)

Query: 259 NTLGSSGVTTRGAS--------VGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDY-R 309
           N+   SG  TRG +         G  GL NLGNTC+MNSA+QC+    E  +YF   + +
Sbjct: 433 NSPALSGPITRGRAQKSGSRKPPGTIGLANLGNTCYMNSALQCVRSVEELTKYFLTGHGK 492

Query: 310 REINWQNPLG------------------------------------------------MV 321
            EIN  NPLG                                                  
Sbjct: 493 EEINPHNPLGNNGNVARAYGDLLAQFYNDSGSSAVRPVNFKNTIGKYAPSFSGYGQQDSQ 552

Query: 322 ELLAFLLDGLHEDLNRVKHKPYIKSKDAD----GRPD--EEVADEYWANHIARNDSIIVD 375
           E L FLLDGL EDL+RV  KPYI+  D+       P+   E+A + W     R+DS+I D
Sbjct: 553 EFLGFLLDGLQEDLSRVLKKPYIEKPDSTDEMVNNPEAIREMAAKVWDITKQRDDSVIAD 612

Query: 376 VCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTV 435
           +  G YKSTLVCP CNK+S+TFDPF  L+L L   +  +  V  F  +    P   T+ +
Sbjct: 613 LFTGMYKSTLVCPSCNKISITFDPFNNLTLQLPIESRWSHQVYYFPLNDK--PILVTIDI 670

Query: 436 PKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRV 495
            K+     L   +     +  ++ L V E        F  D  ++   I  +DH+A Y +
Sbjct: 671 DKNASIGSLKDFVSKRVGVP-ADRLFVCEEYKSKFYTFYKDLAVASEKIGTNDHVAVYEL 729


>gi|321478478|gb|EFX89435.1| hypothetical protein DAPPUDRAFT_310510 [Daphnia pulex]
          Length = 936

 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 107/304 (35%), Positives = 149/304 (49%), Gaps = 69/304 (22%)

Query: 252 ASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRR 310
           AS   +  +L  S  +      G TGL NLGNTC+MN+ +Q L +T     YF +  ++ 
Sbjct: 213 ASQETNSISLSPSADSVMSFKAGYTGLGNLGNTCYMNAVLQALANTTPLKNYFLDKKFQA 272

Query: 311 EINWQNPLGM-----------------------------------------------VEL 323
           +IN  NPLG                                                 E 
Sbjct: 273 DINRDNPLGFGGSLAIAFAIILRQLWSGQRDSIEPSHLKSLLANRASQFSGYAQHDAQEF 332

Query: 324 LAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKS 383
           +AFLLDGLHEDLNRVK KP     +++GRPD  VADE W  +  RNDS+I D+ QGQ+KS
Sbjct: 333 MAFLLDGLHEDLNRVKTKPLTTPVESNGRPDHIVADEAWQVYKMRNDSVIDDLFQGQFKS 392

Query: 384 TLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHG---- 439
           TLVCP C  +SVTFDPF+YL+LPL  + +   TVTV+  DG  +  +  +T  K G    
Sbjct: 393 TLVCPACQNISVTFDPFLYLALPLPPSKS-CFTVTVYF-DG--VDESVELTGTKRGAVKV 448

Query: 440 --------RCRDLIQVLGNICSLK---QSEELKVAEIQNHSIQRFLDD--PLISLSTIKD 486
                   R + L + L  +C+ +      E+++ ++++  I+R+L D  PL SL     
Sbjct: 449 SLWLDPSQRVQQLKEELKRVCAGRFRHPDSEIELVQVRDGLIRRWLVDAAPLSSLQNTNH 508

Query: 487 DDHL 490
            D L
Sbjct: 509 SDAL 512



 Score =  132 bits (333), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 123/224 (54%), Gaps = 28/224 (12%)

Query: 627 GDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHF---------LENLLEVFKNGPVTKKART 677
           GDK +   +  + I + +DW     E+   H           E+L +  +N   +    T
Sbjct: 695 GDKPLDFDADESPIFLSLDWRND--ERSPNHCSVTVKSPTDYEDLSQ--ENSDPSADGDT 750

Query: 678 EP----LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFS 733
            P    L+L+ CL+ F++ E L  E+ WYCP+CKE R+A+K++ +WRLPE+L I LKRFS
Sbjct: 751 SPNQRRLTLHHCLQQFMQSEVLSKEEAWYCPKCKEHREATKQMSVWRLPEILTIQLKRFS 810

Query: 734 YSRSM-KHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIK 792
           +   M + K++  V+FP+   +L+ Y+++  +    +Y+LYA+ NHYGG+  GHYT+  +
Sbjct: 811 FRNLMWRDKIDQKVHFPVEQLDLSPYLSSI-TEHGAVYDLYAVVNHYGGILYGHYTSFAR 869

Query: 793 L---------LDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
                      D   W   DD  +  I E+ V ++AAY+L Y+R
Sbjct: 870 CPAATSDKSQKDVVGWRCMDDRQVRDICEESVVTSAAYLLLYQR 913


>gi|313228437|emb|CBY23588.1| unnamed protein product [Oikopleura dioica]
          Length = 820

 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 140/467 (29%), Positives = 198/467 (42%), Gaps = 125/467 (26%)

Query: 60  EIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLA----RKVISSGLSQTELAVEVYPLRL 115
           ++ + L E +DY ++P+ V+ +L+ W+G          RKVI  G     L VEVY +++
Sbjct: 74  KLKENLKEEQDYTMVPENVYEKLNEWHGVSSNRNYENDRKVIKVGKFTVRLMVEVYKVKI 133

Query: 116 QLLVMPRGE--CSTIRISKKETIGELHR---RACSI---------FYLNLEQICIWDYYG 161
           Q+++   G   CS  +  KK T+ +  R   +A  I          Y    Q  +W    
Sbjct: 134 QIILKFSGNDTCSESK-GKKYTLKDFTRFQSKADMIRDILAMNNDLYPRQGQTRVWSRES 192

Query: 162 HR---KHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLV 218
            +   +H     + ++L +  +  +  IL E   N +G    S  QD   AEK      V
Sbjct: 193 QQEKWRHLNEESLSQSLYELGLHSNGHILCE-FQNDDG----SWPQD---AEK------V 238

Query: 219 EPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGL 278
           E  KS  SI     +S+G                         G  G+   G        
Sbjct: 239 ENKKSLASIV----SSRG-------------------------GKCGLVNLG-------- 261

Query: 279 LNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM----------------- 320
               NTCFMNS IQCL      A YF  D ++ EIN  NPLG                  
Sbjct: 262 ----NTCFMNSGIQCLAAVVPLANYFLGDVWKDEINTVNPLGTNGKLSTAFARLVKNMWG 317

Query: 321 ------------------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDAD 350
                                          EL++ +LD LHED NRV +KPYI+  +A+
Sbjct: 318 GAESSVAPSEVKRECGQINTQFSGYGQNDSQELMSTILDALHEDQNRVINKPYIEKAEAN 377

Query: 351 GRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQAT 410
           GR DEEVA E W NH +RN S+IVD   GQ+KST+ CP C +VSVTFDPF  LS+PL   
Sbjct: 378 GRHDEEVAQESWENHTSRNASVIVDNFHGQFKSTVRCPKCGRVSVTFDPFCTLSVPLPEA 437

Query: 411 TTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQS 457
            T+ + + +  +D  + P      + +     DLI  L    + K S
Sbjct: 438 ATKFLPLVLVQADNISQPLRIQKAIKRKMTIADLISELDEFKTQKDS 484



 Score =  133 bits (335), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 69/175 (39%), Positives = 99/175 (56%), Gaps = 13/175 (7%)

Query: 665 VFKNG-----PVTKKARTEP-------LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQA 712
           V+KNG     P  K   TE        + +  CL  F  EE L   + WYCP CKE +QA
Sbjct: 630 VWKNGEVVNSPSPKDIETEDKANADKGIDINQCLNLFTIEEKLREGEEWYCPHCKEHQQA 689

Query: 713 SKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYEL 772
            K + +W+LP VL++HLKRF Y+R  + K+   V+FP    +++ Y+    + + + Y L
Sbjct: 690 FKHMQIWKLPPVLILHLKRFHYNRIFRDKVCDMVHFPTRGLDMSPYLLGPGAGKAR-YNL 748

Query: 773 YALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            A++NH G +G GHYTA++     N W NF+DS +S   ED   S++AYVL Y R
Sbjct: 749 LAVSNHMGRLGGGHYTANVLHTPTNNWLNFNDSFVSNATEDQSVSSSAYVLVYVR 803


>gi|349603229|gb|AEP99128.1| Ubiquitin carboxyl-terminal hydrolase 15-like protein, partial
           [Equus caballus]
          Length = 438

 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 132/444 (29%), Positives = 204/444 (45%), Gaps = 68/444 (15%)

Query: 428 PSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF--LDDPLISLSTIK 485
           P  Y V VPK G   DL   L  +  +  ++++ V +I NH   R   +D+ L S+   +
Sbjct: 6   PMQYKVVVPKIGNILDLCTALSALSGVP-ADKMIVTDIYNHRFHRIFAMDENLTSIME-R 63

Query: 486 DDDHLAAYRVPKLVK-KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISS 544
           DD ++    + +    + V + +  R + +       T     +G P + ++ R++  + 
Sbjct: 64  DDIYVFEININRTEDTEHVVIPVCLREKFRHSSYTHHTGS-SLFGQPFLMAVPRNN--TE 120

Query: 545 GKIQSTVQRMLSPFLK--------------------------------KESLMHADSFDP 572
            K+ + +   +  ++K                                  S M  D  D 
Sbjct: 121 DKLYNLLLLRMCRYVKISTETEETEGSLHCCKDQNINGNGPNGIHEEGSPSEMETDEPDD 180

Query: 573 SSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEG----- 627
            S      PS   +S S  ++  ++ S +   T      QL       F           
Sbjct: 181 ESSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTCKGQLTGHKKRLFTFQFNNLGNTD 240

Query: 628 --------------DKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF-KNGPVT 672
                         D+ +R+   S    + +DW   L ++Y   F EN  E F K+  V 
Sbjct: 241 INYIKDDTRHIRFDDRQLRLDERS---FLALDWDPDLKKRY---FDENAAEDFEKHESVE 294

Query: 673 KKARTEPL-SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKR 731
            K   +P   L  C+E F  +E L  ED WYCP CKE +QA+KKLDLW LP VLV+HLKR
Sbjct: 295 YKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKR 354

Query: 732 FSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHI 791
           FSYSR M+ KL+T V+FPI+D ++++++ N N+   + Y L A++NHYGGMG GHYTA  
Sbjct: 355 FSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGGHYTAFA 413

Query: 792 KLLDENRWYNFDDSHISPINEDDV 815
           K  D+ +WY FDDS +S  +ED +
Sbjct: 414 KNKDDGKWYYFDDSSVSTASEDQI 437


>gi|255716176|ref|XP_002554369.1| KLTH0F03674p [Lachancea thermotolerans]
 gi|238935752|emb|CAR23932.1| KLTH0F03674p [Lachancea thermotolerans CBS 6340]
          Length = 1198

 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 113/350 (32%), Positives = 166/350 (47%), Gaps = 86/350 (24%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV----------- 321
           G TGL NLGN+C+MNSA+QCLVH PE   YF    Y  ++N QNPLG             
Sbjct: 332 GTTGLSNLGNSCYMNSALQCLVHIPELKDYFLYGGYEEDVNTQNPLGYKGLVAQAFAALI 391

Query: 322 ---------------------------------------ELLAFLLDGLHEDLNRVKHKP 342
                                                  E LAFLLDGLHEDLNR+  KP
Sbjct: 392 KSLFDERSSSAFAFSPREFKSIIGQQNSMFAGFLQQDSQEFLAFLLDGLHEDLNRIIEKP 451

Query: 343 YIKSKDADGRPDEEV---------ADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKV 393
           +++  +    PDE+V         A + W  H  RNDS+I+D+  G YKSTL CPVC+K 
Sbjct: 452 FVEKPEL--SPDEDVNNREVIHRLASKTWDKHKLRNDSVILDLFVGLYKSTLTCPVCDKT 509

Query: 394 SVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICS 453
           SVTFDP+  L+LPL   +  T  V +F +   + P    V +PK    +DL   +  + +
Sbjct: 510 SVTFDPYSDLTLPLPVESIWTSKVRIFPN--FSPPCILEVELPKGSTYQDLKNYVAEVAN 567

Query: 454 LKQSEELKVAEIQNHSI----------QRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAV 503
           +  +++L  AEI NH+            ++L  P+  L  I   D +A Y VP+     V
Sbjct: 568 M-NADDLIGAEIFNHAFYNNYESEGSSAKYL--PIEDL--ISQSDVVAFYEVPRKPDDLV 622

Query: 504 FLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQR 553
            + +++ + EQ    A      +++G P   ++S  ++   G I+  +++
Sbjct: 623 -IPVLNSVLEQGFKTA------RSFGFPFFIALSETELHCYGMIRKKLEQ 665



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/148 (45%), Positives = 96/148 (64%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            +SL+ CL+ F + E L   D WYCP C+E RQA+K++ LW  P++L IHLKRF    S  
Sbjct: 903  ISLFDCLKLFSKPEVLSAADSWYCPTCREHRQATKQIQLWNSPDILTIHLKRFESRHSFS 962

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRW 799
             K+   V+FPI   N++ ++  +++ +  LY+L A+ NHYGG+G GHYTA  K   + +W
Sbjct: 963  DKISDVVDFPICGLNMSDHLVCEDAEQNNLYDLVAVDNHYGGLGGGHYTAFAKNPVDGKW 1022

Query: 800  YNFDDSHISPINEDDVKSAAAYVLFYRR 827
            Y FDDS +S  + +   S AAY+LFYRR
Sbjct: 1023 YYFDDSRVSETDPETSVSGAAYLLFYRR 1050


>gi|313247032|emb|CBY35868.1| unnamed protein product [Oikopleura dioica]
          Length = 816

 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 140/467 (29%), Positives = 198/467 (42%), Gaps = 125/467 (26%)

Query: 60  EIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLA----RKVISSGLSQTELAVEVYPLRL 115
           ++ + L E +DY ++P+ V+ +L+ W+G          RKVI  G     L VEVY +++
Sbjct: 74  KLKENLKEEQDYTMVPENVYEKLNEWHGVSSNRNYENDRKVIKVGKFTVRLMVEVYKVKI 133

Query: 116 QLLVMPRGE--CSTIRISKKETIGELHR---RACSI---------FYLNLEQICIWDYYG 161
           Q+++   G   CS  +  KK T+ +  R   +A  I          Y    Q  +W    
Sbjct: 134 QIILKFSGNDTCSESK-GKKYTLKDFTRFQSKADMIRDILAMNNDLYPRQGQTRVWSRES 192

Query: 162 HR---KHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLV 218
            +   +H     + ++L +  +  +  IL E   N +G    S  QD   AEK      V
Sbjct: 193 QQEKWRHLNEESLSQSLYELGLHSNGHILCE-FQNDDG----SWPQD---AEK------V 238

Query: 219 EPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGL 278
           E  KS  SI     +S+G                         G  G+   G        
Sbjct: 239 ENKKSLASIV----SSRG-------------------------GKCGLVNLG-------- 261

Query: 279 LNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM----------------- 320
               NTCFMNS IQCL      A YF  D ++ EIN  NPLG                  
Sbjct: 262 ----NTCFMNSGIQCLAAVVPLANYFLGDVWKDEINTVNPLGTNGKLSTAFARLVKNMWG 317

Query: 321 ------------------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDAD 350
                                          EL++ +LD LHED NRV +KPYI+  +A+
Sbjct: 318 GAESSVAPSKVKRECGQINTQFSGYGQNDSQELMSTILDALHEDQNRVINKPYIEKAEAN 377

Query: 351 GRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQAT 410
           GR DEEVA E W NH +RN S+IVD   GQ+KST+ CP C +VSVTFDPF  LS+PL   
Sbjct: 378 GRHDEEVAQESWENHTSRNASVIVDNFHGQFKSTVRCPKCGRVSVTFDPFCTLSVPLPEA 437

Query: 411 TTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQS 457
            T+ + + +  +D  + P      + +     DLI  L    + K S
Sbjct: 438 ATKFLPLVLVQADNISQPLRIQKAIKRKMTIADLISELDEFKTQKDS 484



 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 61/143 (42%), Positives = 88/143 (61%), Gaps = 1/143 (0%)

Query: 685 CLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLET 744
           CL  F  EE L   + WYCP CKE +QA K + +W+LP VL++HLKRF Y+R  + K+  
Sbjct: 658 CLNLFTIEEKLREGEEWYCPHCKEHQQAFKHMQIWKLPPVLILHLKRFHYNRIFRDKVCD 717

Query: 745 FVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDD 804
            V+FP    +++ Y+    + + + Y L A++NH G +G GHYTA++     N W NF+D
Sbjct: 718 MVHFPTRGLDMSPYLLGPGAGKAR-YNLLAVSNHMGRLGGGHYTANVLHTPTNNWLNFND 776

Query: 805 SHISPINEDDVKSAAAYVLFYRR 827
           S +S   ED   S++AYVL Y R
Sbjct: 777 SFVSNATEDQSVSSSAYVLVYVR 799


>gi|42406407|gb|AAH65909.1| USP19 protein, partial [Homo sapiens]
          Length = 784

 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 101/262 (38%), Positives = 146/262 (55%), Gaps = 23/262 (8%)

Query: 258 DNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTP--EFARYFREDYRREINWQ 315
           +N LG+ G    G +V L  L    +  F  S ++ +V +   +F  Y + D +      
Sbjct: 3   NNPLGTGGRLAIGFAVLLRALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQ------ 56

Query: 316 NPLGMVELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVD 375
                 E +AFLLDGLHEDLNR+++KPY ++ D+DGRPDE VA+E W  H  RNDS IVD
Sbjct: 57  ------EFMAFLLDGLHEDLNRIQNKPYTETVDSDGRPDEVVAEEAWQRHKMRNDSFIVD 110

Query: 376 VCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTV 435
           + QGQYKS LVCPVC KVS+TFDPF+YL +PL     + + V  F  +  + P  + V+V
Sbjct: 111 LFQGQYKSKLVCPVCAKVSITFDPFLYLPVPL-PQKQKVLPVFYFAREPHSKPIKFLVSV 169

Query: 436 PK-HGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTIKDDDHLAAY 493
            K +    +++  L     +K  E L++AE+  +   R FL  P  SL T+   D L  +
Sbjct: 170 SKENSTASEVLDSLSQSVHVK-PENLRLAEVIKNRFHRVFL--PSHSLDTVSPSDTLLCF 226

Query: 494 RV--PKLVK-KAVFLQLIHRLQ 512
            +   +L K + V L++  R Q
Sbjct: 227 ELLSSELAKERVVVLEVQQRPQ 248



 Score =  152 bits (384), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 93/263 (35%), Positives = 135/263 (51%), Gaps = 25/263 (9%)

Query: 581 PSGEAHSNSSSNI-AKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
           P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 426 PAGERVSRPEAAVPGYQHPSEAMNAHTPQFFIYKIDSSNREQRLEDKGD---------TP 476

Query: 640 IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
           + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 477 LELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 536

Query: 693 EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM-KHKLETFVNFPIH 751
           E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+   + + K+   V FP+ 
Sbjct: 537 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSFRSFIWRDKINDLVEFPVR 596

Query: 752 DFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFDD 804
           + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FDD
Sbjct: 597 NLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFDD 656

Query: 805 SHISPINEDDVKSAAAYVLFYRR 827
           S ++ ++E  V +  AYVLFYRR
Sbjct: 657 STVTTVDESQVVTRYAYVLFYRR 679


>gi|363756064|ref|XP_003648248.1| hypothetical protein Ecym_8140 [Eremothecium cymbalariae
           DBVPG#7215]
 gi|356891448|gb|AET41431.1| Hypothetical protein Ecym_8140 [Eremothecium cymbalariae
           DBVPG#7215]
          Length = 1264

 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/290 (36%), Positives = 138/290 (47%), Gaps = 67/290 (23%)

Query: 272 SVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV--------- 321
           S G  GL NLGNTC+MNSA+QCLVH PEF  YF  + Y +EIN  NPLG           
Sbjct: 345 SNGTVGLGNLGNTCYMNSALQCLVHIPEFKDYFLYNAYEKEINVDNPLGHKGHIAWAFGT 404

Query: 322 -----------------------------------------ELLAFLLDGLHEDLNRVKH 340
                                                    E LAFLLDGLHEDLNR+  
Sbjct: 405 LIQSLFGKRNNLISSYSPRHFKTTIGHLNSMFAGYQQQDSQEFLAFLLDGLHEDLNRIVD 464

Query: 341 KPYIKSKDADGRPD-------EEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKV 393
           KPY++  + +   D       +++AD+ W  H  RNDS+I+D+  G YKSTL+CP C KV
Sbjct: 465 KPYVEKPELNPTDDVTEFETIKKLADDTWLKHKLRNDSVILDLFVGLYKSTLICPTCKKV 524

Query: 394 SVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICS 453
           S TFDP+  L+LPL   +T +  V +F    S+ P T+ V + K     DL + +   C+
Sbjct: 525 STTFDPYNDLTLPLPVDSTWSNKVLIFPH--SSPPYTFEVELNKTDTYCDLKKYVAR-CT 581

Query: 454 LKQSEELKVAEIQNHSI------QRFLDDPLISLSTIKDDDHLAAYRVPK 497
              + +L  AE+ NH         R     L     I D D +  Y VP+
Sbjct: 582 GMNTADLLGAEVFNHQFYNNYEASRADSQYLPIHELISDSDVVVFYEVPR 631



 Score =  144 bits (362), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 67/148 (45%), Positives = 99/148 (66%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            ++L+ CL  F   E L   D WYCP CKE RQA+K+++LW  P++L+IHLKRF   RS  
Sbjct: 937  ITLHDCLTLFSTPEVLGATDSWYCPSCKEHRQATKQIELWNTPDILLIHLKRFENQRSFS 996

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRW 799
             K+   V+FPI D +++ Y+  K+  +  +Y+L A+ NHYGG+G GHYTA++K   +N+W
Sbjct: 997  DKIGDIVHFPITDLDMSPYLVYKDDKKGTIYDLIAVDNHYGGLGGGHYTAYVKNFLDNKW 1056

Query: 800  YNFDDSHISPINEDDVKSAAAYVLFYRR 827
            Y FDDS ++    +   + +AY+LFYRR
Sbjct: 1057 YYFDDSRVNETVPERSIAGSAYLLFYRR 1084


>gi|71997161|ref|NP_001022992.1| Protein CYK-3, isoform b [Caenorhabditis elegans]
 gi|351062914|emb|CCD70948.1| Protein CYK-3, isoform b [Caenorhabditis elegans]
          Length = 1178

 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 206/907 (22%), Positives = 346/907 (38%), Gaps = 182/907 (20%)

Query: 34   ASKRPSGIDNSDL-----------VNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQL 82
            A K P+ IDNS +           V   +AE     P+++ +     DYI +P  +W   
Sbjct: 337  ADKNPNPIDNSGIKGTREDSWTSKVACISAESARLKPDLIPS-----DYIRVPVPLWRAW 391

Query: 83   HSWYGGGPTL----ARKVISSGLSQ-TELAVEVYPLRLQLLVMPRGEC------------ 125
              W+G   T+     RK +     +  + A+E+YPL + LL   R +             
Sbjct: 392  LRWHGCALTVDSQFTRKYLDGEFFEDNKPALELYPLEILLLGHDRKKSQDGTENTPRSLT 451

Query: 126  --STIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMD 183
              +  ++S+  T+ EL     +   L      +W      +       +  LDD    + 
Sbjct: 452  SWACAQVSRSMTVDELLALCKTELRLGDGDARLWQVVKENEEG-----NVLLDDGAQNLH 506

Query: 184  QDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSS 243
            Q  L   L      N    + +     ++ + V  E  ++SLS     +AS  +S    S
Sbjct: 507  Q--LYSSLGKTKKVNKMKLLLE---VRERGTGVWPEELRASLSGKQITAASTLSSNAQLS 561

Query: 244  EISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVH------- 296
            + S  P                        G  GL+N GN C+ N+ IQCL         
Sbjct: 562  DSSGRP------------------------GAVGLVNYGNFCYRNAGIQCLARVSPLTQY 597

Query: 297  -----------------------TPEFARYFRE------------DYRREINWQNPL--- 318
                                   T E+A+  RE            D+   I   + +   
Sbjct: 598  FLDEDNLDAIKRGNLRRGDAAETTIEYAKLLREMWAAKKKNIAPNDFNDAIRLSSDMFEC 657

Query: 319  ----GMVELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVAD--------------- 359
                   E +AFLLD LH  +       +   ++++G    +++D               
Sbjct: 658  SEQHDCQEFVAFLLDQLHTSMYESNKSLHPSPEESEGTDSNKLSDSSKKKEADKEEADEE 717

Query: 360  ---EYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMT 416
                 W  +  +N+S++  +  GQ +S L+C  C   S  F+PF  LSLP+         
Sbjct: 718  KAERSWTEYEKQNESLVTQLFTGQLRSRLICRTCQSSSSVFEPFTSLSLPIGFEDVDLYQ 777

Query: 417  VTVFTSDGSALPSTYTVTV---PKHGRCRDLIQVLGNI------CSLKQSEELKVAEIQN 467
            V V   DG  +P  Y   +    K G  R+++ V   I           S+   ++   N
Sbjct: 778  VIVVHRDGR-IPRRYGFRLSRDSKVGNLREVVAVSSGISMSHLTIQCMSSKGTLMSRSPN 836

Query: 468  HSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHR-LQ-EQEPGAAQTTSQW 525
            H      D+  + LS+      L A  +P+   +  +   +HR LQ   EP    +T+ +
Sbjct: 837  HRSSNLRDE--LPLSSFPSGARLYALELPESTGEDQWRVAMHRKLQYNHEPYILGSTAGF 894

Query: 526  --KAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSG 583
                +G PL+  +  D+ ++  K+   V   +  F++     H+ +   SS     DP  
Sbjct: 895  IVSRFGLPLI--VGLDEEVTGKKLYEDVMYQMHRFME-----HSVN---SSSSRAHDPCE 944

Query: 584  EAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKT-IRIPSSSTSIVV 642
            + +S     +   D +       P L          C    +  D++ + IP++     +
Sbjct: 945  DENSGYPFTLCLVDPNYEWCGQCPAL--------RFCRGCPIRPDESKVFIPANCP---I 993

Query: 643  YVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWY 702
             VDW    L     H  E   E   +   T      P SL  C+E F   E L  +    
Sbjct: 994  AVDWLPIALYLRYNHSQEQACEDDPSVAETWSRHFAPSSLEHCIEKFSCPETL--DAAIQ 1051

Query: 703  CPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKH--KLETFVNFPIHDFNLTKYVA 760
            C +C+++    K + +W+LP+ L+IHLKRF + R      K +  VNFP+  F+   +V 
Sbjct: 1052 CDRCEKKTMRDKVMTIWKLPKYLIIHLKRFEFLREQGRMGKCKRTVNFPLKHFDPAPFVD 1111

Query: 761  NKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAA 820
              + +    YE  AL NHYG +  GH+ A+ K  +E++W   +D  +  ++E++V    A
Sbjct: 1112 KPDGN---TYECIALANHYGQLSCGHFIAYAK-SNEDKWLLLNDCSVREVSEEEVDKQGA 1167

Query: 821  YVLFYRR 827
            Y+LFY R
Sbjct: 1168 YLLFYER 1174


>gi|432105653|gb|ELK31847.1| Ubiquitin carboxyl-terminal hydrolase 43 [Myotis davidii]
          Length = 996

 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 151/593 (25%), Positives = 253/593 (42%), Gaps = 121/593 (20%)

Query: 321 VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARN------DSIIV 374
           +E L +LLD +HED       P  +    +G    E       NH++ +       S + 
Sbjct: 24  LEFLLWLLDRVHEDSEGSSRGPGSQQLQPEGSKASE-------NHLSPSAQLSLGQSFVQ 76

Query: 375 DVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVT-VFTSD-------GSA 426
              Q QY+S+L CP C K S TFDPF+ +SL +    TR ++VT VF S        G A
Sbjct: 77  SHFQAQYRSSLTCPHCLKQSNTFDPFLCVSLSIPLRQTRFLSVTLVFPSQSQRFLRVGLA 136

Query: 427 LPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTIK 485
           +P   TV        R ++   G++      EE+ + E+    +QR F D+    L+TI 
Sbjct: 137 VPILGTVAA-----LRKMVAQEGSV----PVEEVILVELCPSGLQRSFFDE--DDLNTIA 185

Query: 486 DDDHLAAYRVPK------LVKKAVFLQLIHRLQEQEP---------------------GA 518
           + D++ A+  P       L   +  L +  RL  +                       G+
Sbjct: 186 EGDNVYAFPAPPPPGQGTLAAPSPGLSVSPRLAARAGERLSLPAHRENKVLILFCNLVGS 245

Query: 519 AQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTT 578
            Q  S+   +G P +  I  D  IS G++Q  +   +   +K E+L   +   P   +  
Sbjct: 246 GQQASR---FGPPFL--IREDRTISWGQLQQCILSKVRHLMKGEALGQQNP-GPLFAIRV 299

Query: 579 VDPS-------------------GEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNV 619
           V  S                       S   +++A  D S +  +    L L     S+ 
Sbjct: 300 VGQSLALSYLSPQDSRPLCHWAVDRPRSRMQTHLAHRDVSETWKLDAGQLELFPGGLSSP 359

Query: 620 CF-DLSVEGDKTIRIPSSSTSIVVYVDW----SQKLLEKYNTHFLENLLEVFKNGPVTKK 674
            F D        +R P     I + V+W     ++L        +++   V++     + 
Sbjct: 360 VFCDYRA---LHLRRPGGPPHIKLAVEWDSCAKERLFGSLQEARVQDADSVWRQ---QQA 413

Query: 675 ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            +    +L  C + + +EE L  +D W CP C+  +Q   KL LW LP++L++HLKRF  
Sbjct: 414 HQQHSCTLDECFQFYTKEEQLAQDDAWKCPHCQALQQGVVKLSLWTLPDILIVHLKRFCQ 473

Query: 735 SRSMKHKLETFVNFPIHDFNLTKYVANKNS--------SRRQ------------LYELYA 774
               ++KL T V FP+   N+  +VA +++        S +Q            LY+LYA
Sbjct: 474 VGGRRNKLSTLVKFPLCGLNMAPHVAQRSTGAAPGPWPSWKQPACLPTSYPLDFLYDLYA 533

Query: 775 LTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           + NH+G +      A+ +   + +WY++DDS + P+ E++V +  AY+LFY++
Sbjct: 534 VCNHHGSL-----QAYCRNSLDGQWYSYDDSMVEPLPEEEVITRGAYILFYQK 581


>gi|390596584|gb|EIN05985.1| cysteine proteinase [Punctularia strigosozonata HHB-11173 SS5]
          Length = 1280

 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 77/201 (38%), Positives = 115/201 (57%), Gaps = 24/201 (11%)

Query: 646  WSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQ 705
            W Q    ++  HF+   L+   +    KK     +S+Y CL  F +EE L  +D+WYCPQ
Sbjct: 922  WDQSTWNQWG-HFVHPELQDASDDSGKKKD----ISIYDCLNEFTKEEQLGEDDLWYCPQ 976

Query: 706  CKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSS 765
            CK+ +QA+KK DLW  P++LV+HLKRFS SR ++ K++ FV+FP++  +L   V  +  +
Sbjct: 977  CKKHQQATKKFDLWNAPDILVVHLKRFSNSRMLRDKIDAFVDFPVNGLSLEGMVQEREVA 1036

Query: 766  RR-------------------QLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSH 806
            +                     LY+LYA+  H GG+G GHY A+    + N WY+FDDS 
Sbjct: 1037 KHLQAQGVDVASVGLAELDEPLLYDLYAVDEHIGGLGGGHYRAYALNHENNEWYHFDDSF 1096

Query: 807  ISPINEDDVKSAAAYVLFYRR 827
            +SP    +  +A AY+LFY+R
Sbjct: 1097 VSPAKAHESVNANAYLLFYKR 1117



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/268 (32%), Positives = 135/268 (50%), Gaps = 28/268 (10%)

Query: 297 TPEFARYFREDYRREINWQNPLGMVELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEE 356
            P+F+ Y + D +            EL+AFLLDGLHEDLNR+  KPY++  D +G  + E
Sbjct: 499 APQFSGYQQHDSQ------------ELVAFLLDGLHEDLNRILKKPYVEKPDWEGGGELE 546

Query: 357 V---ADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTR 413
           +   A + W  ++ RNDS+IVD+ QGQY+STLVCP C KVS+TFDPFMYL+LPL      
Sbjct: 547 LVQLAKKSWDGYLQRNDSVIVDLFQGQYRSTLVCPECQKVSITFDPFMYLTLPLPIKKKW 606

Query: 414 TMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF 473
             T+    +D S       V +      ++L  +LG       ++ L + E  +H   R 
Sbjct: 607 KHTIFYVPADLSKRHVRVPVEIGADASFKELRALLGRWMEADPNKLLTLEEF-SHRWYRV 665

Query: 474 LDDPLISLSTIKDDDHLAAYRVP----------KLVKKAVFLQLIHRLQEQEPGAAQTTS 523
           LDD +I    +  +D++  + +P          K  +   F+  +H    + P    + +
Sbjct: 666 LDDNVI-CGEMAQNDNIWCFELPCVSYYNRPSSKRPEDGPFIIPVHFKAAKPPTRYGSHA 724

Query: 524 QWKAYGTPLVSSISRDDVISSGKIQSTV 551
           Q + +G P +  I +    S  KI+  V
Sbjct: 725 Q-ELFGMPTIVVIDKTTATSKEKIEEAV 751



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 146/339 (43%), Gaps = 58/339 (17%)

Query: 41  IDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGP-TLARKVISS 99
           +DNS LVN A         E++ + +EG D   +P + W QL  WYG     L RKVI+ 
Sbjct: 145 VDNSHLVNQAG--------ELISSTVEGVDVTYVPSDSWAQLVRWYGEATHPLPRKVIAR 196

Query: 100 GLSQTELAVEVYPLRLQLLVMPRGECST-----------IRISKKETIGELHRRACSIFY 148
           G++Q E ++E++P R++ + +   + +            I +S  +T+ +L   A   F 
Sbjct: 197 GIAQ-EPSLELHPPRIRAMRLVAADDAATQDLADTPLRYITLSSTDTLEDLLNAAIHAFS 255

Query: 149 LNLEQIC----IWDYYGHRKHAL----------------MNDMDRTLDDANIQMDQDILV 188
                      +W     R   +                +    ++LD+A +Q D   ++
Sbjct: 256 PPPSSSPPASRLWSVPAPRTDPVEGGYSASRLLQVGGLQIQPSRKSLDEALVQSDDLFIL 315

Query: 189 EVLDNVNGTNCKSSIQ--DNGFAEKKASSV-----LVEPSKSSLSIAGGWSASK----GT 237
           E+ +N      ++ +   + G AE +  ++     L +P +   +     + +K     T
Sbjct: 316 ELQENGRWLVDEALVPTIEPGTAETETVALEQPAPLFKPEEDFFTRVAKQAVNKILGDVT 375

Query: 238 SRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHT 297
            R +SS     P+ A          +S   T+    G  GL NLGNTCFMNSA+QCL HT
Sbjct: 376 QRTNSSAAENVPSKAVV-----ATNTSTRATKLKPPGTIGLGNLGNTCFMNSALQCLAHT 430

Query: 298 PEFARYFRED-YRREINWQNPLGMVELLAFLLDGLHEDL 335
            E   YF    Y  E+N  NPLGM   +A     L E +
Sbjct: 431 RELVEYFLNGVYEEELNPDNPLGMGGAIAQAFGALLERM 469


>gi|392868885|gb|EAS30236.2| ubiquitin C-terminal hydrolase [Coccidioides immitis RS]
          Length = 1527

 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 70/149 (46%), Positives = 100/149 (67%), Gaps = 2/149 (1%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            +SL  CL+ F REE L   D WYCP+CKE R+ASKK +LW +P++LV+HLKRFS +R  +
Sbjct: 1165 ISLAECLDEFGREEILSENDAWYCPRCKEHRRASKKFELWTVPDILVMHLKRFSANRGFR 1224

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRW 799
             KL+  V+FP+ + ++T      N  +  +Y+L A+ NHYG +G GHYTA+ K   +  W
Sbjct: 1225 DKLDVLVDFPL-ELDMTGRAQAPNDGKSMMYDLIAVDNHYGTLGGGHYTAYAKSFADGNW 1283

Query: 800  YNFDDSHISPINEDD-VKSAAAYVLFYRR 827
            Y ++DSH S  ++   V + AAY+LFYRR
Sbjct: 1284 YEYNDSHTSRKSDPSVVVTKAAYLLFYRR 1312



 Score =  138 bits (347), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/292 (33%), Positives = 135/292 (46%), Gaps = 65/292 (22%)

Query: 266 VTTRG------ASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPL 318
           V TRG       + G+TGL NLGNTC+MNSA+QC+    E  +YF   +Y++++N  NPL
Sbjct: 494 VVTRGRKRKDSKTRGVTGLSNLGNTCYMNSALQCVRSVEELTQYFLANEYKKDLNPSNPL 553

Query: 319 ---GMV---------------------------------------------ELLAFLLDG 330
              G V                                             E L FLLDG
Sbjct: 554 SHNGDVARTYANLLHQMFDENAPDSISPRNFKLTIGRYGPSFSGYGQQDSQEFLLFLLDG 613

Query: 331 LHEDLNRVKHKPYIKSKDA------DGRPDEEVADEYWANHIARNDSIIVDVCQGQYKST 384
           L EDLNR+  KPYI+  D+      D    +E AD  W  + ARNDS+I D+  G YKST
Sbjct: 614 LQEDLNRIHKKPYIEKPDSTDDMVHDKAALQEFADRNWEIYKARNDSVITDLFAGMYKST 673

Query: 385 LVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDL 444
           +VCP C+KVS+ FDPF  L+L L      +  V  F + G   P    V + K+   + L
Sbjct: 674 VVCPACDKVSIIFDPFSNLTLQLPIENVWSKYVYFFPAHGE--PLLIDVEIDKNASIKAL 731

Query: 445 IQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV 495
            + +    +      L +AEI    I + F +   IS  +I   D++A Y +
Sbjct: 732 KEYVAKKVN-SDPRRLVMAEIYTQKIYKLFSNTSAISDCSIGQSDNIAMYEL 782


>gi|164656707|ref|XP_001729481.1| hypothetical protein MGL_3516 [Malassezia globosa CBS 7966]
 gi|159103372|gb|EDP42267.1| hypothetical protein MGL_3516 [Malassezia globosa CBS 7966]
          Length = 1232

 Score =  157 bits (397), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 107/294 (36%), Positives = 146/294 (49%), Gaps = 62/294 (21%)

Query: 265 GVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDYRR-EINWQNPLGM--- 320
           G T R    GL GL NLGNTCFMNSA+QCL +T E  +YF    +  E+N  NPLGM   
Sbjct: 396 GSTAR--PCGLRGLANLGNTCFMNSALQCLSNTHELQQYFLNGVQMDELNTDNPLGMGGT 453

Query: 321 ---------------------------------------------VELLAFLLDGLHEDL 335
                                                         ELLAFLLDGLHEDL
Sbjct: 454 LAMAYGRLVSALWSESASGAVVPREFKTTLARFAPQFMGYAQQDSQELLAFLLDGLHEDL 513

Query: 336 NRVKHKPYIKSKDADGRPDEEV---ADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNK 392
           NR+  KPYI++ D  G  D ++   A + W  + ARNDS+IVD+ QGQY+STLVCP C+K
Sbjct: 514 NRIHKKPYIEAPDWIGGSDADMVRFAQQQWDLYKARNDSVIVDLFQGQYRSTLVCPTCHK 573

Query: 393 VSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNIC 452
           VSV FDPFMYL+LP+  T      V V     +       V +P      +L   + ++ 
Sbjct: 574 VSVKFDPFMYLTLPIPNTRKWRGRVYVVPQHAAQPLVQVDVQLPATATVAELRTKVADLL 633

Query: 453 SLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLA------AYRVPKLVK 500
           S+  +  L + E+ ++ + R+L+     +S I   D++       A+ +PK +K
Sbjct: 634 SMDPA-CLLMGEVWSYHVYRWLEA-FEPVSDISASDYIYLWEVADAFTMPKPMK 685



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 78/186 (41%), Positives = 107/186 (57%), Gaps = 32/186 (17%)

Query: 674  KARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFS 733
            K R   L L  CL+ F R E L   D+WYCP C++ RQA+KK DLW++P++LV+HLKRFS
Sbjct: 929  KRRAPKLRLDDCLDEFTRAEQLGENDLWYCPACRDFRQATKKFDLWKVPDILVVHLKRFS 988

Query: 734  YSRSMKHKLETFVNFPIHDFNLTKYVAN----------KNSSRRQL-------------- 769
              R  + KL+ ++ FP+   +L   V            +  S+ QL              
Sbjct: 989  AGRGTRDKLDNWIEFPLEHLDLRDRVVGTRLWHSLRMERAPSQMQLKEGLIVSHDTHDDD 1048

Query: 770  -------YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDD-VKSAAAY 821
                   Y+LYA+ NH+GG+G GHYTA  K   +  WYNFDDS + P+++ D VKS+AAY
Sbjct: 1049 VLADEPVYDLYAVDNHFGGLGGGHYTAFAKNPADGHWYNFDDSCVRPVSDPDMVKSSAAY 1108

Query: 822  VLFYRR 827
            +LFYRR
Sbjct: 1109 LLFYRR 1114


>gi|119190871|ref|XP_001246042.1| hypothetical protein CIMG_05483 [Coccidioides immitis RS]
          Length = 1671

 Score =  157 bits (397), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 70/149 (46%), Positives = 100/149 (67%), Gaps = 2/149 (1%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            +SL  CL+ F REE L   D WYCP+CKE R+ASKK +LW +P++LV+HLKRFS +R  +
Sbjct: 1309 ISLAECLDEFGREEILSENDAWYCPRCKEHRRASKKFELWTVPDILVMHLKRFSANRGFR 1368

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRW 799
             KL+  V+FP+ + ++T      N  +  +Y+L A+ NHYG +G GHYTA+ K   +  W
Sbjct: 1369 DKLDVLVDFPL-ELDMTGRAQAPNDGKSMMYDLIAVDNHYGTLGGGHYTAYAKSFADGNW 1427

Query: 800  YNFDDSHISPINEDD-VKSAAAYVLFYRR 827
            Y ++DSH S  ++   V + AAY+LFYRR
Sbjct: 1428 YEYNDSHTSRKSDPSVVVTKAAYLLFYRR 1456



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/292 (33%), Positives = 135/292 (46%), Gaps = 65/292 (22%)

Query: 266 VTTRG------ASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPL 318
           V TRG       + G+TGL NLGNTC+MNSA+QC+    E  +YF   +Y++++N  NPL
Sbjct: 638 VVTRGRKRKDSKTRGVTGLSNLGNTCYMNSALQCVRSVEELTQYFLANEYKKDLNPSNPL 697

Query: 319 ---GMV---------------------------------------------ELLAFLLDG 330
              G V                                             E L FLLDG
Sbjct: 698 SHNGDVARTYANLLHQMFDENAPDSISPRNFKLTIGRYGPSFSGYGQQDSQEFLLFLLDG 757

Query: 331 LHEDLNRVKHKPYIKSKDA------DGRPDEEVADEYWANHIARNDSIIVDVCQGQYKST 384
           L EDLNR+  KPYI+  D+      D    +E AD  W  + ARNDS+I D+  G YKST
Sbjct: 758 LQEDLNRIHKKPYIEKPDSTDDMVHDKAALQEFADRNWEIYKARNDSVITDLFAGMYKST 817

Query: 385 LVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDL 444
           +VCP C+KVS+ FDPF  L+L L      +  V  F + G   P    V + K+   + L
Sbjct: 818 VVCPACDKVSIIFDPFSNLTLQLPIENVWSKYVYFFPAHGE--PLLIDVEIDKNASIKAL 875

Query: 445 IQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV 495
            + +    +      L +AEI    I + F +   IS  +I   D++A Y +
Sbjct: 876 KEYVAKKVN-SDPRRLVMAEIYTQKIYKLFSNTSAISDCSIGQSDNIAMYEL 926


>gi|7511085|pir||T29010 hypothetical protein ZK328.1 - Caenorhabditis elegans
          Length = 1041

 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 198/850 (23%), Positives = 340/850 (40%), Gaps = 130/850 (15%)

Query: 34   ASKRPSGIDNSDL-----------VNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQL 82
            A K P+ IDNS +           V   +AE     P+++ +     DYI +P  +W   
Sbjct: 262  ADKNPNPIDNSGIKGTREDSWTSKVACISAESARLKPDLIPS-----DYIRVPVPLWRAW 316

Query: 83   HSWYGGGPTL----ARKVISSGLSQ-TELAVEVYPLRLQLLVMPRGEC------------ 125
              W+G   T+     RK +     +  + A+E+YPL + LL   R +             
Sbjct: 317  LRWHGCALTVDSQFTRKYLDGEFFEDNKPALELYPLEILLLGHDRKKSQDGTENTPRSLT 376

Query: 126  --STIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMD 183
              +  ++S+  T+ EL     +   L      +W      +       +  LDD    + 
Sbjct: 377  SWACAQVSRSMTVDELLALCKTELRLGDGDARLWQVVKENEEG-----NVLLDDGAQNLH 431

Query: 184  QDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSS 243
            Q  L   L      N    + +     ++ + V  E  ++SLS   G   +  ++ + ++
Sbjct: 432  Q--LYSSLGKTKKVNKMKLLLE---VRERGTGVWPEELRASLS---GKQITAASTLSSNA 483

Query: 244  EISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARY 303
            ++S  P                        G  GL+N GN C+ N+ IQCL       +Y
Sbjct: 484  QLSGRP------------------------GAVGLVNYGNFCYRNAGIQCLARVSPLTQY 519

Query: 304  F----------REDYRREINWQNPLGMVELLAFLLDGLHEDLNRVKHKPYIKSKDADGRP 353
            F          R + RR    +  +   +LL  +     +++    +    K +      
Sbjct: 520  FLDEDNLDAIKRGNLRRGDAAETTIEYAKLLREMWAAKKKNI--APNDLIKKKEADKEEA 577

Query: 354  DEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTR 413
            DEE A+  W  +  +N+S++  +  GQ +S L+C  C   S  F+PF  LSLP+      
Sbjct: 578  DEEKAERSWTEYEKQNESLVTQLFTGQLRSRLICRTCQSSSSVFEPFTSLSLPIGFEDVD 637

Query: 414  TMTVTVFTSDGSALPSTYTVTV---PKHGRCRDLIQVLGNI------CSLKQSEELKVAE 464
               V V   DG  +P  Y   +    K G  R+++ V   I           S+   ++ 
Sbjct: 638  LYQVIVVHRDGR-IPRRYGFRLSRDSKVGNLREVVAVSSGISMSHLTIQCMSSKGTLMSR 696

Query: 465  IQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHR-LQ-EQEPGAAQTT 522
              NH      D+  + LS+      L A  +P+   +  +   +HR LQ   EP    +T
Sbjct: 697  SPNHRSSNLRDE--LPLSSFPSGARLYALELPESTGEDQWRVAMHRKLQYNHEPYILGST 754

Query: 523  SQW--KAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVD 580
            + +    +G PL+  +  D+ ++  K+   V   +  F++     H+ +   SS     D
Sbjct: 755  AGFIVSRFGLPLI--VGLDEEVTGKKLYEDVMYQMHRFME-----HSVN---SSSSRAHD 804

Query: 581  PSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKT-IRIPSSSTS 639
            P  + +S     +   D +       P L          C    +  D++ + IP++   
Sbjct: 805  PCEDENSGYPFTLCLVDPNYEWCGQCPAL--------RFCRGCPIRPDESKVFIPANCP- 855

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPED 699
              + VDW    L     H  E   E   +   T      P SL  C+E F   E L  + 
Sbjct: 856  --IAVDWLPIALYLRYNHSQEQACEDDPSVAETWSRHFAPSSLEHCIEKFSCPETL--DA 911

Query: 700  MWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKH--KLETFVNFPIHDFNLTK 757
               C +C+++    K + +W+LP+ L+IHLKRF + R      K +  VNFP+  F+   
Sbjct: 912  AIQCDRCEKKTMRDKVMTIWKLPKYLIIHLKRFEFLREQGRMGKCKRTVNFPLKHFDPAP 971

Query: 758  YVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKS 817
            +V   + +    YE  AL NHYG +  GH+ A+ K  +E++W   +D  +  ++E++V  
Sbjct: 972  FVDKPDGN---TYECIALANHYGQLSCGHFIAYAK-SNEDKWLLLNDCSVREVSEEEVDK 1027

Query: 818  AAAYVLFYRR 827
              AY+LFY R
Sbjct: 1028 QGAYLLFYER 1037


>gi|302308992|ref|NP_986174.2| AFR627Cp [Ashbya gossypii ATCC 10895]
 gi|299790892|gb|AAS53998.2| AFR627Cp [Ashbya gossypii ATCC 10895]
 gi|374109406|gb|AEY98312.1| FAFR627Cp [Ashbya gossypii FDAG1]
          Length = 1287

 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 102/291 (35%), Positives = 140/291 (48%), Gaps = 67/291 (23%)

Query: 271 ASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLG---------- 319
           +S G  GL NLGNTC+MNSA+QCL+H PEF  YF  + Y +E+N +NPLG          
Sbjct: 341 SSKGTIGLSNLGNTCYMNSALQCLLHIPEFKDYFLYNGYEKEVNIENPLGHKGHIAWAFA 400

Query: 320 -MV---------------------------------------ELLAFLLDGLHEDLNRVK 339
            MV                                       E LAFLLDGLHEDLNR+ 
Sbjct: 401 SMVQALFGKRHSAATSYSPRNFKNTIGHLNSMFSGYQQQDSQEFLAFLLDGLHEDLNRII 460

Query: 340 HKPYIKSKD-------ADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNK 392
            KPY++  +       A+ +  +++AD+ W  H  RNDS+I D+  G YKSTL+CPVC K
Sbjct: 461 EKPYVEKPELTSTDDTAEFKVIKKLADDTWGKHKLRNDSVITDLFVGLYKSTLICPVCKK 520

Query: 393 VSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNIC 452
            SVTFDP+  L+LPL   +T +  V +F  +    P +  V + K    + L + +   C
Sbjct: 521 TSVTFDPYNDLTLPLPVNSTWSNKVLIFPHNSH--PYSLEVELKKTDTYQQLKEYVAK-C 577

Query: 453 SLKQSEELKVAEIQNHSIQRFLDDP------LISLSTIKDDDHLAAYRVPK 497
           +      L  AE+ NH      + P      L     I D D +  Y +P+
Sbjct: 578 ANVDPANLFGAEVFNHQFYNNYEAPNSESQYLPIHELIGDSDVVVFYEIPR 628



 Score =  142 bits (358), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 69/148 (46%), Positives = 99/148 (66%), Gaps = 1/148 (0%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            ++L+ CL  F   E L   D W+CP CKE RQA+K+++LW  P++L+IHLKRF   RS  
Sbjct: 962  ITLHDCLTLFSTPEVLGATDSWFCPNCKEHRQATKQIELWNAPDILLIHLKRFENQRSFS 1021

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRW 799
             K+   V+FPI D ++T Y+  KN  +  +Y+L A+ NHYGG+G GHYTA++K +D  +W
Sbjct: 1022 DKIADTVHFPITDLDMTPYLVYKNEDKGDIYDLIAVDNHYGGLGGGHYTAYVKNID-GKW 1080

Query: 800  YNFDDSHISPINEDDVKSAAAYVLFYRR 827
            Y FDDS +S    +   + +AY+LFYRR
Sbjct: 1081 YYFDDSRVSETLPERSIAGSAYLLFYRR 1108


>gi|440639022|gb|ELR08941.1| hypothetical protein GMDG_03608 [Geomyces destructans 20631-21]
          Length = 1523

 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 69/149 (46%), Positives = 101/149 (67%), Gaps = 1/149 (0%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            L L  CL+ F +EE L   D WYCP+CKE R+ASKKL+LWR P+++V HLKRFS +   +
Sbjct: 1106 LFLDECLDEFGKEEILSEMDTWYCPRCKEHRRASKKLELWRTPDIMVFHLKRFSSTAMRR 1165

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRW 799
             KL+  V FPI   +++  V  +   ++ +Y+L+A+ NHYG +G GHYTA+ K   +  W
Sbjct: 1166 DKLDIQVTFPIDGLDMSTRVLEREDGKKDIYDLFAVDNHYGSLGGGHYTAYAKSFVDGAW 1225

Query: 800  YNFDDSHISPINEDD-VKSAAAYVLFYRR 827
            Y+++DS +S + +   V S+AAY+LFYRR
Sbjct: 1226 YDYNDSAVSKLKDPSHVISSAAYLLFYRR 1254



 Score =  133 bits (334), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 93/281 (33%), Positives = 128/281 (45%), Gaps = 58/281 (20%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM-------- 320
           G +VG  GL NLGNTC+MNSA+QC+    E  +YF  D   +E+N +NPLG         
Sbjct: 439 GKTVGTVGLANLGNTCYMNSALQCIRSVEELTKYFLADEAEKELNTENPLGKGGNVALVY 498

Query: 321 ----------------------------------------VELLAFLLDGLHEDLNRVKH 340
                                                    E L  LLD L EDLNRVK 
Sbjct: 499 NALLRELYKEPPPSSITPRQFKNTFGRYFGSFSGYGQQDSQEFLGILLDALQEDLNRVKK 558

Query: 341 KPYIKSKDA-DGRPD-----EEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVS 394
           KPYI+  D+ D   D     +++A E W     R+DS+I D+  G YKSTLVCP C KVS
Sbjct: 559 KPYIEKPDSTDEMVDNPAALKKMAKEVWDITKRRDDSVIGDLFTGMYKSTLVCPDCAKVS 618

Query: 395 VTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSL 454
           +TFDPF  +++ L   +T    V  F  +    P    V + K G  + L   + +   +
Sbjct: 619 ITFDPFSTVTMQLPIESTWGHEVFFFPLNDK--PVRVAVDMDKQGSIKGLKTFVSSRVGV 676

Query: 455 KQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRV 495
              E L +AE  N+ I R L+D       I+ +D +  + +
Sbjct: 677 A-VERLFIAEEFNNQIYRILEDTKSVSEDIQANDRIMVFEL 716


>gi|341879705|gb|EGT35640.1| hypothetical protein CAEBREN_07724 [Caenorhabditis brenneri]
          Length = 1172

 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 214/900 (23%), Positives = 347/900 (38%), Gaps = 177/900 (19%)

Query: 34   ASKRPSGIDNSDL-----------VNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQL 82
            + K P+ IDNS +           V   +AE     P++V +     DYI +P  +W   
Sbjct: 338  SGKNPNPIDNSGIKGTREDSWTSKVACISAESARLKPDLVPS-----DYIRVPVPLWKAW 392

Query: 83   HSWYGGGPTL----ARKVISSGLSQ-TELAVEVYPLRLQLLVMPR-----GECSTIR--- 129
              W+G   T+     RK +     +  + A+E+YPL + LL   R     G  +T R   
Sbjct: 393  LRWHGCALTIDSQFTRKYLDGDFFEDNKPALELYPLEILLLGHDRKKSHDGTETTPRSLT 452

Query: 130  ------ISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMD 183
                  +S+  T+ EL     +   L      +W      +       +  LDD    + 
Sbjct: 453  PWACAQVSRSMTVDELLSLCKTELRLGDGDARLWQVIKENEEG-----NVLLDDGRQNLH 507

Query: 184  QDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSS 243
            Q  L   L      N    + +     ++ + V  E  ++SLS     +AS  +S N  +
Sbjct: 508  Q--LYTALGKTKKVNKMKLLLE---VRERGTGVWPEELRASLSGKQITAASTLSSSN--A 560

Query: 244  EISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVH------- 296
            ++S  P                        G  GL+N GN C+ N+ IQCL         
Sbjct: 561  QLSGRP------------------------GAVGLVNYGNFCYRNAGIQCLARVSPLTQY 596

Query: 297  -----------------------TPEFARYFRE------------DYRREINWQNPL--- 318
                                   T E+A+  RE            D+   I   + +   
Sbjct: 597  LLEDDHLEEIKKANTRRRDAVETTIEYAKLLREMWAAKKKNIAPNDFNDAIRMNSDMFEC 656

Query: 319  ----GMVELLAFLLDGLHEDL---NRVKHKPYIKSKDADGRPDEEVADEY---------W 362
                   E +AFL+D LH  +   N+ +H P +  +       EE   E          W
Sbjct: 657  SEQHDCQEFVAFLIDQLHTSMYEANKARH-PELSVQKKKESSKEEEEKEETDEEKAERSW 715

Query: 363  ANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTS 422
              +  +NDS++ D+  GQ +S L+C  C   S  F+PF  LSLP+         V V   
Sbjct: 716  TEYEKQNDSLVTDLFTGQLRSRLICKTCQSSSSVFEPFTSLSLPIGFEDVDLYQVIVVHR 775

Query: 423  DGSALPSTYTVTVPKHGRCRDLIQVLGNICSLK------QSEELKVAEIQNHSIQRF--L 474
            DG  +P  Y   + +  +  +L +V+ +   +       Q    K   +   + QR   L
Sbjct: 776  DGR-IPRRYGFRLSRDSKIGNLREVVASASGISKDHITIQCMSSKGTLMSRSATQRSSNL 834

Query: 475  DDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHR-LQ-EQEPGAAQTTSQW--KAYGT 530
             D L  LS+      L A  +P+   +  +   +HR LQ   EP    +T+ +    +G 
Sbjct: 835  KDEL-PLSSFPSGARLYALELPESTGEDEWRVAMHRKLQYNHEPHILGSTAGFIVSRFGL 893

Query: 531  PLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSS 590
            PL+  +  D+ +S  K+   V   +  F++       +SF   +     DP  +  S   
Sbjct: 894  PLI--VGLDENVSGRKLYEDVMYQMHRFMEHS----VNSFSSRAH----DPCEDDASGFP 943

Query: 591  SNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKT-IRIPSSSTSIVVYVDWSQK 649
              +   D +       P L          C    +  D+  + IP +     + VDW   
Sbjct: 944  FTLCLVDQNYEWCGQCPAL--------RFCRGCPIRPDENKVFIPPNCP---IAVDWLPI 992

Query: 650  LLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKER 709
             L     H  E   E   +   T      P SL  CLE F   E L  +    C +C+++
Sbjct: 993  ALYLRYNHSQEQACEDDPSVEETWSRHFAPSSLEHCLEKFSCPETL--DAAIQCDRCEKK 1050

Query: 710  RQASKKLDLWRLPEVLVIHLKRFSYSRSMKH--KLETFVNFPIHDFNLTKYVANKNSSRR 767
                K + +W+LP+ ++IHLKRF + R      K +  VNFP+  F+   +V   + +  
Sbjct: 1051 TMRDKVMTIWKLPKYIIIHLKRFEFLREQGRMGKCKRTVNFPLQHFDPAPFVDKPDGN-- 1108

Query: 768  QLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
              YE  AL NHYG +  GH+ A+ K  +E++W   +D  +  ++E++V    AY+LFY R
Sbjct: 1109 -TYECIALANHYGQLSCGHFIAYAK-SNEDKWLLLNDCSVREVSEEEVDKQGAYLLFYER 1166


>gi|358365870|dbj|GAA82492.1| ubiquitin carboxyl-terminal hydrolase [Aspergillus kawachii IFO 4308]
          Length = 1663

 Score =  156 bits (395), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 71/149 (47%), Positives = 105/149 (70%), Gaps = 1/149 (0%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            ++LY CL+ F +EE L   D WYCP+CKE R+ASKK +LW+ P++LV+HLKRFS SR  +
Sbjct: 1283 VTLYECLDEFNKEEVLSENDAWYCPRCKEHRRASKKFELWKTPDILVMHLKRFSASRGFR 1342

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRW 799
             KL+  V+FP+   ++T  V +    + Q+Y+L+A+ NHYGG+G GHYTA+ K     +W
Sbjct: 1343 DKLDVLVDFPVEGLDMTGRVESPEEGKSQIYDLFAVDNHYGGLGGGHYTAYAKNFFTGQW 1402

Query: 800  YNFDDSHIS-PINEDDVKSAAAYVLFYRR 827
              ++DS +S PI+   V +++AY+LFYRR
Sbjct: 1403 NEYNDSSVSRPIDPQSVVTSSAYLLFYRR 1431



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 151/584 (25%), Positives = 231/584 (39%), Gaps = 139/584 (23%)

Query: 41  IDNSDLV------NDATAEDPGAGPEIVDTLLE-GRDYILLPQEVWNQLHSWYG---GGP 90
           +DNSD+V      N    ++ G     +   LE G D+ ++PQ  W+ +  WYG     P
Sbjct: 399 VDNSDIVLVTDPANTGFKDEEGEPFVPLRPGLELGEDFEIIPQGGWDLIMQWYGLAEQSP 458

Query: 91  TLARKVISSGL--SQTELAVEVYPLRLQLLVMPRGECST-IRISKKETIGELH------- 140
            + R V ++     Q  L  E+ P    +L +      T I+  K++T+  +        
Sbjct: 459 AIVRYVHNTAAVGDQENLQYEINPPIFTILKLTNPSAGTSIKTMKEKTMAPVRTLASRHT 518

Query: 141 ------RRACSIFYLNLE-QICIWDYYGH----------------------RKHALMNDM 171
                 + A  + ++++  ++ +W   G                           + N  
Sbjct: 519 NFQKWLKNAKELAHIDMSTKVRVWRILGGLGSATASAAATPAASRSASPAPSASLIANAG 578

Query: 172 DRTLDDANIQM------DQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLV------- 218
              + D N  +       +++L E  D  N  N    +   G A   +S ++V       
Sbjct: 579 SNLVLDLNTFLSLSEGSQREVLDEPKDQTNNPNYNGKMT-LGVAGLNSSEIIVLEEKLPG 637

Query: 219 -------EPSKSSLSIAGGWSASKGTSRNHS-SEISTSPNLASARDSDNTLGSSGVTTRG 270
                  E SK +L+  G      GT +N + +++ +     S R S  +    G    G
Sbjct: 638 TSGDWVSEASKQTLNRLG---VPSGTLKNGAPAKVKSKSPATSGRSSPVSEPIRGRRKDG 694

Query: 271 ASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPL---GMV----- 321
              G TGL NLGNTC+MNSA+QC+    E   YF  D Y++++N  NPL   G V     
Sbjct: 695 KPRGCTGLSNLGNTCYMNSALQCVRSVEELTYYFLNDVYKKDLNPSNPLAHNGDVAKAYA 754

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   E L FLLDGL EDLNR+  K
Sbjct: 755 NMLRQMYDEAGQSSFAPRQLKHTIGRYGPAFSGYGQQDSQEFLLFLLDGLQEDLNRIMKK 814

Query: 342 PYIKSKDADGRPDE---------EVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNK 392
           PYI+  D+    DE         E AD+ W  + ARNDS+I D+  G YKSTLVCP C+K
Sbjct: 815 PYIEKPDST---DEMVHNKEALAEFADKCWDIYKARNDSVITDLFAGMYKSTLVCPACDK 871

Query: 393 VSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNIC 452
           VS+ FDPF  L+L L         +  F  +    P    V + K+   + L + +    
Sbjct: 872 VSIIFDPFNNLTLQLPIENLWGKEIFYFPLNKK--PVLVDVEIDKNASVKALKEQVAKKM 929

Query: 453 SLKQSEELKVAEIQNHSIQRFLDD-PLISLSTIKDDDHLAAYRV 495
                E L +AEI  +   +  D+   I+   I  +D +  Y V
Sbjct: 930 GT-DPERLVMAEIYKNKFYKMFDNTSSIAECQISGNDDIGIYEV 972


>gi|25150771|ref|NP_498311.2| Protein CYK-3, isoform a [Caenorhabditis elegans]
 gi|18766553|gb|AAL79016.1|AF469173_1 ubiquitin c-terminal hydrolase [Caenorhabditis elegans]
 gi|351062913|emb|CCD70947.1| Protein CYK-3, isoform a [Caenorhabditis elegans]
          Length = 1175

 Score =  156 bits (395), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 202/907 (22%), Positives = 346/907 (38%), Gaps = 185/907 (20%)

Query: 34   ASKRPSGIDNSDL-----------VNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQL 82
            A K P+ IDNS +           V   +AE     P+++ +     DYI +P  +W   
Sbjct: 337  ADKNPNPIDNSGIKGTREDSWTSKVACISAESARLKPDLIPS-----DYIRVPVPLWRAW 391

Query: 83   HSWYGGGPTL----ARKVISSGLSQ-TELAVEVYPLRLQLLVMPRGEC------------ 125
              W+G   T+     RK +     +  + A+E+YPL + LL   R +             
Sbjct: 392  LRWHGCALTVDSQFTRKYLDGEFFEDNKPALELYPLEILLLGHDRKKSQDGTENTPRSLT 451

Query: 126  --STIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMD 183
              +  ++S+  T+ EL     +   L      +W      +       +  LDD    + 
Sbjct: 452  SWACAQVSRSMTVDELLALCKTELRLGDGDARLWQVVKENEEG-----NVLLDDGAQNLH 506

Query: 184  QDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSS 243
            Q  L   L      N    + +     ++ + V  E  ++SLS   G   +  ++ + ++
Sbjct: 507  Q--LYSSLGKTKKVNKMKLLLE---VRERGTGVWPEELRASLS---GKQITAASTLSSNA 558

Query: 244  EISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARY 303
            ++S  P                        G  GL+N GN C+ N+ IQCL       +Y
Sbjct: 559  QLSGRP------------------------GAVGLVNYGNFCYRNAGIQCLARVSPLTQY 594

Query: 304  F----------REDYRREINWQNPLGMVELL----------------------------- 324
            F          R + RR    +  +   +LL                             
Sbjct: 595  FLDEDNLDAIKRGNLRRGDAAETTIEYAKLLREMWAAKKKNIAPNDFNDAIRLSSDMFEC 654

Query: 325  ----------AFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVAD--------------- 359
                      AFLLD LH  +       +   ++++G    +++D               
Sbjct: 655  SEQHDCQEFVAFLLDQLHTSMYESNKSLHPSPEESEGTDSNKLSDSSKKKEADKEEADEE 714

Query: 360  ---EYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMT 416
                 W  +  +N+S++  +  GQ +S L+C  C   S  F+PF  LSLP+         
Sbjct: 715  KAERSWTEYEKQNESLVTQLFTGQLRSRLICRTCQSSSSVFEPFTSLSLPIGFEDVDLYQ 774

Query: 417  VTVFTSDGSALPSTYTVTV---PKHGRCRDLIQVLGNI------CSLKQSEELKVAEIQN 467
            V V   DG  +P  Y   +    K G  R+++ V   I           S+   ++   N
Sbjct: 775  VIVVHRDGR-IPRRYGFRLSRDSKVGNLREVVAVSSGISMSHLTIQCMSSKGTLMSRSPN 833

Query: 468  HSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHR-LQ-EQEPGAAQTTSQW 525
            H      D+  + LS+      L A  +P+   +  +   +HR LQ   EP    +T+ +
Sbjct: 834  HRSSNLRDE--LPLSSFPSGARLYALELPESTGEDQWRVAMHRKLQYNHEPYILGSTAGF 891

Query: 526  --KAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSG 583
                +G PL+  +  D+ ++  K+   V   +  F++     H+ +   SS     DP  
Sbjct: 892  IVSRFGLPLI--VGLDEEVTGKKLYEDVMYQMHRFME-----HSVN---SSSSRAHDPCE 941

Query: 584  EAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKT-IRIPSSSTSIVV 642
            + +S     +   D +       P L          C    +  D++ + IP++     +
Sbjct: 942  DENSGYPFTLCLVDPNYEWCGQCPAL--------RFCRGCPIRPDESKVFIPANCP---I 990

Query: 643  YVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWY 702
             VDW    L     H  E   E   +   T      P SL  C+E F   E L  +    
Sbjct: 991  AVDWLPIALYLRYNHSQEQACEDDPSVAETWSRHFAPSSLEHCIEKFSCPETL--DAAIQ 1048

Query: 703  CPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKH--KLETFVNFPIHDFNLTKYVA 760
            C +C+++    K + +W+LP+ L+IHLKRF + R      K +  VNFP+  F+   +V 
Sbjct: 1049 CDRCEKKTMRDKVMTIWKLPKYLIIHLKRFEFLREQGRMGKCKRTVNFPLKHFDPAPFVD 1108

Query: 761  NKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAA 820
              + +    YE  AL NHYG +  GH+ A+ K  +E++W   +D  +  ++E++V    A
Sbjct: 1109 KPDGN---TYECIALANHYGQLSCGHFIAYAK-SNEDKWLLLNDCSVREVSEEEVDKQGA 1164

Query: 821  YVLFYRR 827
            Y+LFY R
Sbjct: 1165 YLLFYER 1171


>gi|303315325|ref|XP_003067670.1| Ubiquitin carboxyl-terminal hydrolase family protein [Coccidioides
            posadasii C735 delta SOWgp]
 gi|240107340|gb|EER25525.1| Ubiquitin carboxyl-terminal hydrolase family protein [Coccidioides
            posadasii C735 delta SOWgp]
          Length = 1527

 Score =  156 bits (394), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 69/149 (46%), Positives = 100/149 (67%), Gaps = 2/149 (1%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            +SL  CL+ F REE L   D WYCP+CKE R+ASKK +LW +P++LV+HLKRFS +R  +
Sbjct: 1165 ISLAECLDEFGREEILSENDAWYCPRCKEHRRASKKFELWTVPDILVMHLKRFSANRGFR 1224

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRW 799
             KL+  V+FP+ + +++      N  +  +Y+L A+ NHYG +G GHYTA+ K   +  W
Sbjct: 1225 DKLDVLVDFPL-ELDMSGRAQAPNDGKSMMYDLIAVDNHYGTLGGGHYTAYAKSFADGNW 1283

Query: 800  YNFDDSHISPINEDD-VKSAAAYVLFYRR 827
            Y ++DSH S  ++   V + AAY+LFYRR
Sbjct: 1284 YEYNDSHTSRKSDPSVVVTKAAYLLFYRR 1312



 Score =  139 bits (349), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 95/282 (33%), Positives = 132/282 (46%), Gaps = 59/282 (20%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPL---GMV---- 321
           G + G+TGL NLGNTC+MNSA+QC+    E  +YF   +Y++++N  NPL   G V    
Sbjct: 504 GKTRGVTGLSNLGNTCYMNSALQCVRSVEELTQYFLANEYKKDLNPSNPLSHNGDVARTY 563

Query: 322 -----------------------------------------ELLAFLLDGLHEDLNRVKH 340
                                                    E L FLLDGL EDLNR+  
Sbjct: 564 ANLLHQMFDENAPDSISPRSFKLTIGRYGPAFSGYGQQDSQEFLLFLLDGLQEDLNRIHK 623

Query: 341 KPYIKSKDA------DGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVS 394
           KPYI+  D+      D    +E AD  W  + ARNDS+I D+  G YKST+VCP C+KVS
Sbjct: 624 KPYIEKPDSTDDMVHDKAALQEFADRNWEIYKARNDSVITDLFAGMYKSTVVCPACDKVS 683

Query: 395 VTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSL 454
           + FDPF  L+L L      +  V  F + G   P    V + K+   + L + +    + 
Sbjct: 684 IIFDPFSNLTLQLPIENVWSKYVYFFPAHGE--PLLIDVEIDKNASIKALKEYVAKKVN- 740

Query: 455 KQSEELKVAEIQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV 495
                L +AEI    I + F +   IS  +I   D++A Y +
Sbjct: 741 SDPRRLVMAEIYTQKIYKLFSNTSAISDCSIGQSDNIAMYEL 782


>gi|320035500|gb|EFW17441.1| ubiquitin C-terminal hydrolase [Coccidioides posadasii str. Silveira]
          Length = 1527

 Score =  156 bits (394), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 69/149 (46%), Positives = 100/149 (67%), Gaps = 2/149 (1%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            +SL  CL+ F REE L   D WYCP+CKE R+ASKK +LW +P++LV+HLKRFS +R  +
Sbjct: 1165 ISLAECLDEFGREEILSENDAWYCPRCKEHRRASKKFELWTVPDILVMHLKRFSANRGFR 1224

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRW 799
             KL+  V+FP+ + +++      N  +  +Y+L A+ NHYG +G GHYTA+ K   +  W
Sbjct: 1225 DKLDVLVDFPL-ELDMSGRAQAPNDGKSMMYDLIAVDNHYGTLGGGHYTAYAKSFADGNW 1283

Query: 800  YNFDDSHISPINEDD-VKSAAAYVLFYRR 827
            Y ++DSH S  ++   V + AAY+LFYRR
Sbjct: 1284 YEYNDSHTSRKSDPSVVVTKAAYLLFYRR 1312



 Score =  139 bits (349), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 95/282 (33%), Positives = 132/282 (46%), Gaps = 59/282 (20%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPL---GMV---- 321
           G + G+TGL NLGNTC+MNSA+QC+    E  +YF   +Y++++N  NPL   G V    
Sbjct: 504 GKTRGVTGLSNLGNTCYMNSALQCVRSVEELTQYFLANEYKKDLNPSNPLSHNGDVARTY 563

Query: 322 -----------------------------------------ELLAFLLDGLHEDLNRVKH 340
                                                    E L FLLDGL EDLNR+  
Sbjct: 564 ANLLHQMFDENAPDSISPRSFKLTIGRYGPAFSGYGQQDSQEFLLFLLDGLQEDLNRIHK 623

Query: 341 KPYIKSKDA------DGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVS 394
           KPYI+  D+      D    +E AD  W  + ARNDS+I D+  G YKST+VCP C+KVS
Sbjct: 624 KPYIEKPDSTDDMVHDKAALQEFADRNWEIYKARNDSVITDLFAGMYKSTVVCPACDKVS 683

Query: 395 VTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSL 454
           + FDPF  L+L L      +  V  F + G   P    V + K+   + L + +    + 
Sbjct: 684 IIFDPFSNLTLQLPIENVWSKYVYFFPAHGE--PLLIDVEIDKNASIKALKEYVAKKVN- 740

Query: 455 KQSEELKVAEIQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV 495
                L +AEI    I + F +   IS  +I   D++A Y +
Sbjct: 741 SDPRRLVMAEIYTQKIYKLFSNTSAISDCSIGQSDNIAMYEL 782


>gi|317027427|ref|XP_001399282.2| ubiquitin carboxyl-terminal hydrolase [Aspergillus niger CBS 513.88]
          Length = 1644

 Score =  156 bits (394), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 71/149 (47%), Positives = 104/149 (69%), Gaps = 1/149 (0%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            ++LY CL+ F +EE L   D WYCP+CKE R+ASKK +LW+ P++LV+HLKRFS SR  +
Sbjct: 1264 VTLYECLDEFNKEEVLSENDAWYCPRCKEHRRASKKFELWKTPDILVMHLKRFSASRGFR 1323

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRW 799
             KL+  V+FP+   ++T  V      + Q+Y+L+A+ NHYGG+G GHYTA+ K     +W
Sbjct: 1324 DKLDVLVDFPVEGLDMTGRVEAPEEGKSQIYDLFAVDNHYGGLGGGHYTAYAKNFFTGQW 1383

Query: 800  YNFDDSHIS-PINEDDVKSAAAYVLFYRR 827
              ++DS +S PI+   V +++AY+LFYRR
Sbjct: 1384 NEYNDSSVSRPIDPQSVVTSSAYLLFYRR 1412



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 151/584 (25%), Positives = 230/584 (39%), Gaps = 139/584 (23%)

Query: 41  IDNSDLV------NDATAEDPGAGPEIVDTLLE-GRDYILLPQEVWNQLHSWYG---GGP 90
           +DNSD+V      N    ++ G     +   LE G D+ ++PQ  W+ +  WYG     P
Sbjct: 380 VDNSDIVLVTDPANTGFKDEEGEPFVPLRPGLELGEDFEIIPQGGWDLIMQWYGLAEQSP 439

Query: 91  TLARKVISSGL--SQTELAVEVYPLRLQLLVMPRGECST-IRISKKETIGELH------- 140
            + R V ++     Q  L  E+ P    +L +      T I+  K++T+  +        
Sbjct: 440 AIVRYVHNTAAVGDQENLQYEINPPIFTILKLTNPSAGTSIKTMKEKTMAPVRTLASRHT 499

Query: 141 ------RRACSIFYLNLE-QICIWDYYGH----------------------RKHALMNDM 171
                 + A  +  +++  ++ +W   G                           + N  
Sbjct: 500 NFQKWLKNAKELAQIDMSTKVRVWRILGGLGSATASAAATPAASRSASPAPSASLIANAG 559

Query: 172 DRTLDDANIQM------DQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLV------- 218
              + D N  +       +++L E  D  N  N    +   G A   +S ++V       
Sbjct: 560 SNLVLDLNTFLSLSEGSQREVLDEPKDQTNNPNYNGKMT-LGVAGLNSSEIIVLEEKLPG 618

Query: 219 -------EPSKSSLSIAGGWSASKGTSRNHS-SEISTSPNLASARDSDNTLGSSGVTTRG 270
                  E SK +L+  G      G+ +N + +++ T     S R S  +    G    G
Sbjct: 619 TSGEWVSEASKQTLNRLG---VPSGSLKNGAPAKVKTKSPATSGRSSPVSEPIRGRRKDG 675

Query: 271 ASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPL---GMV----- 321
              G TGL NLGNTC+MNSA+QC+    E   YF  D Y++++N  NPL   G V     
Sbjct: 676 KPRGCTGLSNLGNTCYMNSALQCVRSVEELTYYFLNDVYKKDLNPSNPLAHNGDVAKAYA 735

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   E L FLLDGL EDLNR+  K
Sbjct: 736 NMLRQMYDEAGQSSFAPRQLKHTIGRYGPAFSGYGQQDSQEFLLFLLDGLQEDLNRIMKK 795

Query: 342 PYIKSKDADGRPDE---------EVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNK 392
           PYI+  D+    DE         E AD+ W  + ARNDS+I D+  G YKSTLVCP C+K
Sbjct: 796 PYIEKPDST---DEMVHNKEALAEFADKCWDIYKARNDSVITDLFAGMYKSTLVCPACDK 852

Query: 393 VSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNIC 452
           VS+ FDPF  L+L L         +  F  +    P    V + K+   + L + +    
Sbjct: 853 VSIIFDPFNNLTLQLPIENLWGKEIFYFPLNKK--PVLVDVEIDKNASVKALKEQVAKKM 910

Query: 453 SLKQSEELKVAEIQNHSIQRFLDD-PLISLSTIKDDDHLAAYRV 495
                E L +AEI  +   +  D+   I+   I  +D +  Y V
Sbjct: 911 GT-DPERLVMAEIYKNKFYKMFDNTSSIAECQISGNDDIGIYEV 953


>gi|350634283|gb|EHA22645.1| hypothetical protein ASPNIDRAFT_175538 [Aspergillus niger ATCC 1015]
          Length = 1574

 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 71/149 (47%), Positives = 104/149 (69%), Gaps = 1/149 (0%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            ++LY CL+ F +EE L   D WYCP+CKE R+ASKK +LW+ P++LV+HLKRFS SR  +
Sbjct: 1194 VTLYECLDEFNKEEVLSENDAWYCPRCKEHRRASKKFELWKTPDILVMHLKRFSASRGFR 1253

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRW 799
             KL+  V+FP+   ++T  V      + Q+Y+L+A+ NHYGG+G GHYTA+ K     +W
Sbjct: 1254 DKLDVLVDFPVEGLDMTGRVEAPEEGKSQIYDLFAVDNHYGGLGGGHYTAYAKNFFTGQW 1313

Query: 800  YNFDDSHIS-PINEDDVKSAAAYVLFYRR 827
              ++DS +S PI+   V +++AY+LFYRR
Sbjct: 1314 NEYNDSSVSRPIDPQSVVTSSAYLLFYRR 1342



 Score =  134 bits (336), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 151/584 (25%), Positives = 230/584 (39%), Gaps = 139/584 (23%)

Query: 41  IDNSDLV------NDATAEDPGAGPEIVDTLLE-GRDYILLPQEVWNQLHSWYG---GGP 90
           +DNSD+V      N    ++ G     +   LE G D+ ++PQ  W+ +  WYG     P
Sbjct: 293 VDNSDIVLVTDPANTGFKDEEGEPFVPLRPGLELGEDFEIIPQGGWDLIMQWYGLAEQSP 352

Query: 91  TLARKVISSGL--SQTELAVEVYPLRLQLLVMPRGECST-IRISKKETIGELH------- 140
            + R V ++     Q  L  E+ P    +L +      T I+  K++T+  +        
Sbjct: 353 AIVRYVHNTAAVGDQENLQYEINPPIFTILKLTNPSAGTSIKTMKEKTMAPVRTLASRHT 412

Query: 141 ------RRACSIFYLNLE-QICIWDYYGH----------------------RKHALMNDM 171
                 + A  +  +++  ++ +W   G                           + N  
Sbjct: 413 NFQKWLKNAKELAQIDMSTKVRVWRILGGLGSATASAAATPAASRSASPAPSASLIANAG 472

Query: 172 DRTLDDANIQM------DQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLV------- 218
              + D N  +       +++L E  D  N  N    +   G A   +S ++V       
Sbjct: 473 SNLVLDLNTFLSLSEGSQREVLDEPKDQTNNPNYNGKMT-LGVAGLNSSEIIVLEEKLPG 531

Query: 219 -------EPSKSSLSIAGGWSASKGTSRNHS-SEISTSPNLASARDSDNTLGSSGVTTRG 270
                  E SK +L+  G      G+ +N + +++ T     S R S  +    G    G
Sbjct: 532 TSGEWVSEASKQTLNRLG---VPSGSLKNGAPAKVKTKSPATSGRSSPVSEPIRGRRKDG 588

Query: 271 ASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPL---GMV----- 321
              G TGL NLGNTC+MNSA+QC+    E   YF  D Y++++N  NPL   G V     
Sbjct: 589 KPRGCTGLSNLGNTCYMNSALQCVRSVEELTYYFLNDVYKKDLNPSNPLAHNGDVAKAYA 648

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   E L FLLDGL EDLNR+  K
Sbjct: 649 NMLRQMYDEAGQSSFAPRQLKHTIGRYGPAFSGYGQQDSQEFLLFLLDGLQEDLNRIMKK 708

Query: 342 PYIKSKDADGRPDE---------EVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNK 392
           PYI+  D+    DE         E AD+ W  + ARNDS+I D+  G YKSTLVCP C+K
Sbjct: 709 PYIEKPDST---DEMVHNKEALAEFADKCWDIYKARNDSVITDLFAGMYKSTLVCPACDK 765

Query: 393 VSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNIC 452
           VS+ FDPF  L+L L         +  F  +    P    V + K+   + L + +    
Sbjct: 766 VSIIFDPFNNLTLQLPIENLWGKEIFYFPLNKK--PVLVDVEIDKNASVKALKEQVAKKM 823

Query: 453 SLKQSEELKVAEIQNHSIQRFLDD-PLISLSTIKDDDHLAAYRV 495
                E L +AEI  +   +  D+   I+   I  +D +  Y V
Sbjct: 824 GT-DPERLVMAEIYKNKFYKMFDNTSSIAECQISGNDDIGIYEV 866


>gi|134056184|emb|CAK96359.1| unnamed protein product [Aspergillus niger]
          Length = 1661

 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 71/149 (47%), Positives = 104/149 (69%), Gaps = 1/149 (0%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            ++LY CL+ F +EE L   D WYCP+CKE R+ASKK +LW+ P++LV+HLKRFS SR  +
Sbjct: 1281 VTLYECLDEFNKEEVLSENDAWYCPRCKEHRRASKKFELWKTPDILVMHLKRFSASRGFR 1340

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRW 799
             KL+  V+FP+   ++T  V      + Q+Y+L+A+ NHYGG+G GHYTA+ K     +W
Sbjct: 1341 DKLDVLVDFPVEGLDMTGRVEAPEEGKSQIYDLFAVDNHYGGLGGGHYTAYAKNFFTGQW 1400

Query: 800  YNFDDSHIS-PINEDDVKSAAAYVLFYRR 827
              ++DS +S PI+   V +++AY+LFYRR
Sbjct: 1401 NEYNDSSVSRPIDPQSVVTSSAYLLFYRR 1429



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 151/584 (25%), Positives = 230/584 (39%), Gaps = 139/584 (23%)

Query: 41  IDNSDLV------NDATAEDPGAGPEIVDTLLE-GRDYILLPQEVWNQLHSWYG---GGP 90
           +DNSD+V      N    ++ G     +   LE G D+ ++PQ  W+ +  WYG     P
Sbjct: 397 VDNSDIVLVTDPANTGFKDEEGEPFVPLRPGLELGEDFEIIPQGGWDLIMQWYGLAEQSP 456

Query: 91  TLARKVISSGL--SQTELAVEVYPLRLQLLVMPRGECST-IRISKKETIGELH------- 140
            + R V ++     Q  L  E+ P    +L +      T I+  K++T+  +        
Sbjct: 457 AIVRYVHNTAAVGDQENLQYEINPPIFTILKLTNPSAGTSIKTMKEKTMAPVRTLASRHT 516

Query: 141 ------RRACSIFYLNLE-QICIWDYYGH----------------------RKHALMNDM 171
                 + A  +  +++  ++ +W   G                           + N  
Sbjct: 517 NFQKWLKNAKELAQIDMSTKVRVWRILGGLGSATASAAATPAASRSASPAPSASLIANAG 576

Query: 172 DRTLDDANIQM------DQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLV------- 218
              + D N  +       +++L E  D  N  N    +   G A   +S ++V       
Sbjct: 577 SNLVLDLNTFLSLSEGSQREVLDEPKDQTNNPNYNGKMT-LGVAGLNSSEIIVLEEKLPG 635

Query: 219 -------EPSKSSLSIAGGWSASKGTSRNHS-SEISTSPNLASARDSDNTLGSSGVTTRG 270
                  E SK +L+  G      G+ +N + +++ T     S R S  +    G    G
Sbjct: 636 TSGEWVSEASKQTLNRLG---VPSGSLKNGAPAKVKTKSPATSGRSSPVSEPIRGRRKDG 692

Query: 271 ASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPL---GMV----- 321
              G TGL NLGNTC+MNSA+QC+    E   YF  D Y++++N  NPL   G V     
Sbjct: 693 KPRGCTGLSNLGNTCYMNSALQCVRSVEELTYYFLNDVYKKDLNPSNPLAHNGDVAKAYA 752

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   E L FLLDGL EDLNR+  K
Sbjct: 753 NMLRQMYDEAGQSSFAPRQLKHTIGRYGPAFSGYGQQDSQEFLLFLLDGLQEDLNRIMKK 812

Query: 342 PYIKSKDADGRPDE---------EVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNK 392
           PYI+  D+    DE         E AD+ W  + ARNDS+I D+  G YKSTLVCP C+K
Sbjct: 813 PYIEKPDST---DEMVHNKEALAEFADKCWDIYKARNDSVITDLFAGMYKSTLVCPACDK 869

Query: 393 VSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNIC 452
           VS+ FDPF  L+L L         +  F  +    P    V + K+   + L + +    
Sbjct: 870 VSIIFDPFNNLTLQLPIENLWGKEIFYFPLNKK--PVLVDVEIDKNASVKALKEQVAKKM 927

Query: 453 SLKQSEELKVAEIQNHSIQRFLDD-PLISLSTIKDDDHLAAYRV 495
                E L +AEI  +   +  D+   I+   I  +D +  Y V
Sbjct: 928 GT-DPERLVMAEIYKNKFYKMFDNTSSIAECQISGNDDIGIYEV 970


>gi|342865976|gb|EGU71977.1| hypothetical protein FOXB_17538 [Fusarium oxysporum Fo5176]
          Length = 1647

 Score =  155 bits (393), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 75/149 (50%), Positives = 104/149 (69%), Gaps = 1/149 (0%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            +SL  CL+ F R E L  +DMWYCP+CKE R+ASKK DLW+ P++LV HLKRFS S   +
Sbjct: 1263 ISLEECLDEFERAEVLSEQDMWYCPRCKEHRRASKKFDLWKSPDILVAHLKRFSNSGWRR 1322

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRW 799
             KL+  V+FPI   +LT  V  K   + ++Y+L A+ +HYGG+G GHYTA+ K   + RW
Sbjct: 1323 DKLDVMVDFPIEGLDLTSRVIQKEDGKDEIYDLIAVDDHYGGLGGGHYTAYAKNFVDGRW 1382

Query: 800  YNFDDSHISPINEDDV-KSAAAYVLFYRR 827
            YN++DS  SP+++     ++AAY+LFYRR
Sbjct: 1383 YNYNDSSASPVSDPSTCITSAAYLLFYRR 1411



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/243 (34%), Positives = 112/243 (46%), Gaps = 57/243 (23%)

Query: 260 TLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPL 318
           T G +G    G S+G+ GL NLGNTC+MNSA+QC+    E  +YF   +Y  E+N  N L
Sbjct: 598 TRGRTGKKP-GRSIGVVGLQNLGNTCYMNSALQCVRSVEELTKYFLTNEYLDEVNKTNLL 656

Query: 319 GM-----------------------------------------------VELLAFLLDGL 331
           G                                                 E L FLLD L
Sbjct: 657 GYNGKVAITYGNLLKEIYTEGRGSVTPRDFKNTIGRCRSTFSGYGQQDSQEFLGFLLDAL 716

Query: 332 HEDLNRVKHKPYIKSKDAD----GRPD--EEVADEYWANHIARNDSIIVDVCQGQYKSTL 385
            EDL+RVK KPYI+  D+       P+  +E+AD+ W     R+DS+I D+  G YKSTL
Sbjct: 717 QEDLSRVKKKPYIEKPDSTDDMINNPEAIKEMADKVWDITRLRDDSVIADLFTGLYKSTL 776

Query: 386 VCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLI 445
            CP C K+S+TFDPF  L+LP+         V     +   +P  + V +PKH     L 
Sbjct: 777 KCPECGKISITFDPFNNLTLPIPVEDVWMAKVKFLPLND--VPVMFEVELPKHSAIEQLK 834

Query: 446 QVL 448
           Q L
Sbjct: 835 QFL 837


>gi|198466499|ref|XP_001354019.2| GA20997 [Drosophila pseudoobscura pseudoobscura]
 gi|198150628|gb|EAL29756.2| GA20997 [Drosophila pseudoobscura pseudoobscura]
          Length = 1775

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 112/305 (36%), Positives = 148/305 (48%), Gaps = 62/305 (20%)

Query: 250  NLASARDSDNTLGSSGVTTRGA--------SVGLTGLLNLGNTCFMNSAIQCLVHTPEFA 301
            +LASA+    T G+ G   R          + G TGL NLGNTCFMN+A+Q L +T   A
Sbjct: 705  SLASAQSGQGTGGAPGDRRRLTRSSIMSVHAPGATGLHNLGNTCFMNAALQVLFNTQPLA 764

Query: 302  RYF-REDYRREINWQNPLGM---------------------------------------- 320
            +YF RE +R E+N  N LG                                         
Sbjct: 765  QYFQREMHRFELNAANKLGTRGQLAMRYAELLKEVWTATTRSVAPLKLRFCVNKHAPQFA 824

Query: 321  -------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSII 373
                    ELL +LLD LHEDLNRV  KPY + KD++GRPD+ VA E W+ H ARN SII
Sbjct: 825  GGGQHDTQELLEWLLDALHEDLNRVMEKPYSELKDSNGRPDKIVAAEAWSQHHARNQSII 884

Query: 374  VDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTV 433
            +D+  GQ KS + C  C   SV FDPF  LSLPL       + V V   DGS +P  Y +
Sbjct: 885  IDLFYGQLKSKVSCLGCGHESVRFDPFSLLSLPLPVENYVYLEVLVILLDGS-VPIKYGL 943

Query: 434  TVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFL-DDPLISLSTIKDDDHLAA 492
             +    +  DL   L  +C L+ S  L V E+ N  I++ + D+  +   T K+   L  
Sbjct: 944  RLNSECKYGDLKHKLATLCPLQPSLML-VCELWNSQIRQLVGDEDKLRTQTAKE---LYV 999

Query: 493  YRVPK 497
            Y++P+
Sbjct: 1000 YQLPE 1004



 Score = 84.3 bits (207), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 66/122 (54%), Gaps = 2/122 (1%)

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPED 699
              + +DW    L       LE L    +   + ++ + EP+ L  CL AF  EE L  E 
Sbjct: 1427 FTIAIDWDPTALHLRYQSTLERLWVDHETIAICRREQVEPVDLNHCLRAFTSEEKL--EQ 1484

Query: 700  MWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYV 759
             +YC  CK ++ A+KKL +W+LP +L++HLKRF+       K +  V+FP  +F+ T Y+
Sbjct: 1485 WYYCSHCKGKKPATKKLQIWKLPPILIVHLKRFNCVNGKWVKSQKVVHFPFDEFDPTPYL 1544

Query: 760  AN 761
            A+
Sbjct: 1545 AS 1546



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 8/89 (8%)

Query: 37  RPSGIDNSDLV------NDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGP 90
           RP  IDNS+L+      N  T    G   +    +++  D+ L+P+ +W  L+ WYG   
Sbjct: 485 RPGAIDNSNLITANPYRNVRTLTGEGGHLKRDTPIVQSHDFELVPKSLWKALNRWYGDNL 544

Query: 91  TLARKVISSGLSQTELAVEVYPLRLQLLV 119
            L R+VI      T++ +E+YPL L++L+
Sbjct: 545 PLPRQVIQP--PNTDVELELYPLNLRILL 571



 Score = 43.5 bits (101), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 770  YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDV-KSAAAYVLFYRR 827
            Y+LYA+ +H G +  GHY ++        WY ++DS    I++  V   +AAY+LFY R
Sbjct: 1676 YKLYAVVSHSGMLNGGHYISYAS-NSSGSWYCYNDSSCREISQKPVIDPSAAYLLFYER 1733


>gi|341889009|gb|EGT44944.1| hypothetical protein CAEBREN_17498 [Caenorhabditis brenneri]
          Length = 1056

 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/289 (33%), Positives = 139/289 (48%), Gaps = 51/289 (17%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLG------------- 319
           G TGL N+GNTCFMN+ +Q LV+  E   +F RE Y+ EIN  NPLG             
Sbjct: 453 GYTGLRNIGNTCFMNAILQMLVNNVELREFFLREHYQSEINESNPLGSEGRLARAFADFM 512

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E L+FLLDGLHED+NRVK KP   
Sbjct: 513 QQMWSGRHKAIEPIQIKNIVAEKASQFANFAQHDAHEFLSFLLDGLHEDVNRVKKKPLTG 572

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + ++ GR D +V++E W NHI RNDSI VD+  GQ KS + CP C++VS+TFDPF+YL +
Sbjct: 573 TVESHGRHDLDVSNEAWRNHILRNDSIFVDLFHGQLKSHVQCPNCDRVSITFDPFVYLPV 632

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
           P      ++ ++  +  +  A P   TV+    G   D +  +  +  +  S  L+  E 
Sbjct: 633 PF-PKRKKSTSLIFWPLENQAKPYKLTVSYSTEGTVADFLSAVSEVVKVP-SRNLRACEA 690

Query: 466 QNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQ 514
             H   R     +  +S I   D+L  ++V    +    + ++H LQ +
Sbjct: 691 LCHRFDRIYTSDM-KVSDIISPDYLFVFQVHDESECNESVVILHVLQRE 738



 Score = 41.6 bits (96), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 13/91 (14%)

Query: 746  VNFPIHDFNLTKYVA----NKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDEN---- 797
            V +P+   +++ +++    N NS+   +Y+L  +  H G    GHY +  +L D +    
Sbjct: 944  VEYPLESLDMSPFLSDTSPNHNST---IYDLTGVVCHNGSSYFGHYVSMGRLADFDSSKT 1000

Query: 798  --RWYNFDDSHISPINEDDVKSAAAYVLFYR 826
               W  FDDS ++  +  ++++  AY+LFY+
Sbjct: 1001 KIEWRQFDDSMVTRQSTGNLQTDDAYLLFYK 1031


>gi|195435576|ref|XP_002065756.1| GK19705 [Drosophila willistoni]
 gi|194161841|gb|EDW76742.1| GK19705 [Drosophila willistoni]
          Length = 1771

 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/275 (38%), Positives = 139/275 (50%), Gaps = 54/275 (19%)

Query: 272  SVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGM---------- 320
            + G TGL NLGNTCFMN+A+Q L +T   A+YF R+ +R E+N  N LG           
Sbjct: 737  AAGATGLHNLGNTCFMNAALQVLFNTQPLAQYFQRQMHRFELNQTNKLGTRGQLAMRYSE 796

Query: 321  -------------------------------------VELLAFLLDGLHEDLNRVKHKPY 343
                                                  ELL +LLD LHEDLNRV  KPY
Sbjct: 797  LLKEVWTATTRSVAPLKLRFCVNKHAPQFAGGGQHDSQELLEWLLDALHEDLNRVTEKPY 856

Query: 344  IKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYL 403
             + KD++GRPD+ VA E W+ H ARN SII+D+  GQ KS + C  C   SV FDPF  L
Sbjct: 857  SELKDSNGRPDKIVAAEAWSQHHARNQSIIIDLFYGQLKSKVSCLGCGHESVRFDPFSLL 916

Query: 404  SLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVA 463
            SLPL       + V V   DGS +P  Y + +    +  DL Q L  +C+L+ S  L V 
Sbjct: 917  SLPLPVENYVYLEVLVILLDGS-VPIKYGLRLNSECKYIDLKQKLATLCALQPSLML-VC 974

Query: 464  EIQNHSIQRFL-DDPLISLSTIKDDDHLAAYRVPK 497
            E+ N  I++ L D+  +   + KD   L  Y++P+
Sbjct: 975  ELWNSQIRQVLNDEEKLRTQSAKD---LYVYQLPE 1006



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 2/122 (1%)

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPED 699
              + +DW    L       LE L    +   + ++ + EP+ L  CL AF  EE L  E 
Sbjct: 1437 FTIAIDWDPTALHLRYQSTLERLWVDHETIAICRREQVEPVDLNHCLRAFTSEEKL--EQ 1494

Query: 700  MWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYV 759
             ++C  CK ++ A+KKL +W+LP +L++HLKRF+       K +  V+FP  DF+   Y+
Sbjct: 1495 WYHCSHCKGKKPATKKLQIWKLPPILIVHLKRFNCVNGKWVKSQKVVHFPFDDFDPAPYL 1554

Query: 760  AN 761
            A+
Sbjct: 1555 AS 1556



 Score = 51.2 bits (121), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 37  RPSGIDNSDLV------NDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGP 90
           RP  IDN +L+      N  T    G   +    L++  D+ L+P+ +W  L+ WYG   
Sbjct: 485 RPGPIDNGNLITTNPYRNVRTLTGEGGHLKRDTPLVQSHDFELVPKSLWKALNRWYGDNL 544

Query: 91  TLARKVISSGLSQTELAVEVYPLRLQLLV 119
            L R+VI    S+ EL  E+YPL L++L+
Sbjct: 545 PLPRQVIQPVNSEVEL--ELYPLNLRILL 571



 Score = 44.7 bits (104), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 770  YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINED-DVKSAAAYVLFYRR 827
            Y+LYA+ +H G +  GHY ++    +   WY ++DS    I++  ++  +AAY+LFY R
Sbjct: 1673 YKLYAVVSHSGMLNGGHYISYASNAN-GSWYCYNDSSCREISQQPNIDPSAAYLLFYER 1730


>gi|196005611|ref|XP_002112672.1| hypothetical protein TRIADDRAFT_56945 [Trichoplax adhaerens]
 gi|190584713|gb|EDV24782.1| hypothetical protein TRIADDRAFT_56945 [Trichoplax adhaerens]
          Length = 930

 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 86/209 (41%), Positives = 109/209 (52%), Gaps = 49/209 (23%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLG------------- 319
           G+TGL NLGNTCFMNS +QC+ +T     +F E D R EIN+ NPLG             
Sbjct: 369 GMTGLNNLGNTCFMNSILQCMSNTRPLRDFFLECDLRNEINYDNPLGSKGAIVAAFAVLI 428

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E +A+LLDGLHEDLNRV++KP  +
Sbjct: 429 RTLWCGKYHSYSPSKLKSLVAAKATQFMGYAQQDAQEFMAYLLDGLHEDLNRVRNKPLTQ 488

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
             +  GRPDEEVA+E W  H  RNDS+IVD   GQ+KS L+CP C+K S TFDPFM L L
Sbjct: 489 VVEGAGRPDEEVANEAWMVHRKRNDSLIVDYFFGQFKSVLICPECDKKSTTFDPFMVLPL 548

Query: 406 PLQATTTRTMTVTVFTS-DGSALPSTYTV 433
           P+ A       + V  +  G+ +  T+ V
Sbjct: 549 PIPAVKVPIKVIPVINNFPGTGIQKTFMV 577



 Score = 44.7 bits (104), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 24/34 (70%)

Query: 760 ANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKL 793
           A+ NS+   +Y+LYA+ NHYGG+  GHYTA  + 
Sbjct: 868 ASTNSNESYIYDLYAVVNHYGGLMGGHYTAFARF 901


>gi|322707063|gb|EFY98642.1| ubiquitin carboxyl-terminal hydrolase, putative [Metarhizium
            anisopliae ARSEF 23]
          Length = 1568

 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 77/166 (46%), Positives = 112/166 (67%), Gaps = 3/166 (1%)

Query: 663  LEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLP 722
            L++ +   VT+K R   ++L  CL+ F R E L  +DMWYCP+CKE R+ASKK DLW+ P
Sbjct: 1224 LKITQRRRVTRKTRG--ITLEECLDEFERAEILSEQDMWYCPRCKEHRRASKKFDLWKTP 1281

Query: 723  EVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGM 782
            ++LV HLKRFS S   + KL+  V+FPI   +LT  V  K   + ++Y+L  + +HYGG+
Sbjct: 1282 DILVAHLKRFSSSGWRRDKLDVLVDFPIEGLDLTSRVIQKEDGKAEIYDLIGVDDHYGGL 1341

Query: 783  GSGHYTAHIKLLDENRWYNFDDSHISPINED-DVKSAAAYVLFYRR 827
            G GHYTA+ K   + RWYN++DS +  +++   V ++AAY+LFYRR
Sbjct: 1342 GGGHYTAYAKNFVDGRWYNYNDSSVHVVSDPTSVITSAAYLLFYRR 1387



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/233 (35%), Positives = 108/233 (46%), Gaps = 56/233 (24%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGM-------- 320
           G S+G  GL NLGNTC+MNSA+QC+    E  +YF  E Y  EIN  N LG         
Sbjct: 574 GRSIGAVGLHNLGNTCYMNSALQCVRSVEELTKYFLTESYFTEINKTNVLGFEGRVAIAY 633

Query: 321 ---------------------------------------VELLAFLLDGLHEDLNRVKHK 341
                                                   E L FLLD L EDL+R+K K
Sbjct: 634 GNLLREVYEEGRGSVSPRDFKSTVGRCRPTFSGWSQQDSQEFLGFLLDALQEDLSRIKKK 693

Query: 342 PYIKSKDAD----GRPD--EEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSV 395
           PYI+  D+       P+  +E+AD+ W     R+DS+I D+  G YKSTL CP C K+S+
Sbjct: 694 PYIEKPDSTDDMINNPEAIKEMADKVWDITCRRDDSVIADLFTGLYKSTLKCPECGKISI 753

Query: 396 TFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVL 448
           TFDPF  L+LPL      + +V  F  +   +P    V + +H     L Q +
Sbjct: 754 TFDPFNNLTLPLPLENMWSKSVKFFPLND--VPVKIEVELSRHSSMESLKQFI 804


>gi|268571845|ref|XP_002641164.1| C. briggsae CBR-CYK-3 protein [Caenorhabditis briggsae]
          Length = 1168

 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 163/644 (25%), Positives = 256/644 (39%), Gaps = 106/644 (16%)

Query: 259  NTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVH---------------------- 296
            +TL SS     G   G  GL+N GN C+ N+ IQCL                        
Sbjct: 552  STLSSSNAQLSGRP-GAVGLVNYGNFCYRNAGIQCLARVSPLTQYLLEDEHLDELKKANT 610

Query: 297  --------TPEFARYFRE------------DYRREINWQNPL-------GMVELLAFLLD 329
                    T E+A+  RE            D+   I   + +          E +AFLLD
Sbjct: 611  KRRDAVETTIEYAKLLREMWAAKKKNIAPNDFNDAIRMNSDMFECSEQHDCQEFVAFLLD 670

Query: 330  GLHEDL---NRVKHKPYIKSKDADGR-------PDEEVADEYWANHIARNDSIIVDVCQG 379
             LH  +   N+  H P                  DEE A+  W  +  +N+S++  +  G
Sbjct: 671  QLHTSMYEANKTLHPPPPAKDPKKEEENHEIEETDEEKAERSWTEYEKQNESLVTQLFTG 730

Query: 380  QYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTV---P 436
            Q +S LVC  C   S  F+PF  LSLP+         V V   DG  +P  Y   +    
Sbjct: 731  QLRSRLVCRTCQSSSSVFEPFTSLSLPIGFEDVDLYQVIVVHRDGR-IPRRYGFRLSRDS 789

Query: 437  KHGRCRDLIQVLGNI------CSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHL 490
            K G  R+++     I           S+   ++   NH      D+  + LS+      L
Sbjct: 790  KIGHLREVVAASSGISMSHITIQCMSSKGTLMSRSPNHRSSNLRDE--LPLSSFPSGARL 847

Query: 491  AAYRVPKLVKKAVFLQLIHR-LQ-EQEPGAAQTTSQW--KAYGTPLVSSISRDDVISSGK 546
             A  +P+   +  +   +HR LQ   EP    +T+ +    +G PL+  +  D+ ++  K
Sbjct: 848  YALELPESTGEDEWRVAMHRKLQYNHEPHILGSTAGFIVSRFGLPLI--VGLDEHVTGKK 905

Query: 547  IQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTL 606
            +   V   +  F++       +SF   +     DP  +  S     +   D +       
Sbjct: 906  LYEDVMYQMHRFMEHS----VNSFSSRAH----DPCEDDASGFPFTLCLVDQNYEWCGQC 957

Query: 607  PNLPLQLVDESNVCFDLSVE-GDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEV 665
            P L          C    +   D  + IP++S    + VDW    L     H  E   E 
Sbjct: 958  PAL--------RFCRGCPIRPDDNKVFIPANSP---IAVDWFPIALYLRYNHSEEQACED 1006

Query: 666  FKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVL 725
              +   T      P SL  C+E F   E L  +    C +C+++    K + +W+LP+ L
Sbjct: 1007 DPSVAETWSRHFAPSSLEHCIEKFSCPETL--DAAIQCDRCEKKTTRDKVMTIWKLPKYL 1064

Query: 726  VIHLKRFSYSRSMKH--KLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMG 783
            +IHLKRF + R      K +  VNFP+  F+   +V   + +    YE  AL NHYG + 
Sbjct: 1065 IIHLKRFEFLREQGRMGKCKRTVNFPLKHFDPAPFVDKPDGN---TYECIALANHYGQLS 1121

Query: 784  SGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             GH+ A+ K  +E++W   +D  +  ++E++V    AY+LFY R
Sbjct: 1122 CGHFIAYAK-SNEDKWLLLNDCSVREVSEEEVDKQGAYLLFYER 1164


>gi|340522027|gb|EGR52260.1| predicted protein [Trichoderma reesei QM6a]
          Length = 1658

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/149 (49%), Positives = 105/149 (70%), Gaps = 1/149 (0%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            ++L  CL+ F R E L  +DMWYCP+CKE R+ASKK DLW+ P+ LV HLKRFS S   +
Sbjct: 1314 ITLDECLDEFERAEVLSEQDMWYCPRCKEHRRASKKFDLWKSPDYLVAHLKRFSSSGWRR 1373

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRW 799
             KL+  V+FPI   +LT  V  K   ++++Y+L A+ +HYGG+G GHYTA+ K   + RW
Sbjct: 1374 DKLDVLVDFPIEGLDLTSRVIQKEEGKQEIYDLIAVDDHYGGLGGGHYTAYAKNFVDGRW 1433

Query: 800  YNFDDSHISPINE-DDVKSAAAYVLFYRR 827
            YN++DS +S +++   V ++AAY+LFYRR
Sbjct: 1434 YNYNDSSVSAVSDPSSVVTSAAYLLFYRR 1462



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/255 (36%), Positives = 120/255 (47%), Gaps = 68/255 (26%)

Query: 263 SSGVTTRGA--------SVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREIN 313
           S G TTRG         SVG  GL NLGNTC+MNSA+QC+    E  +YF  D Y  E+N
Sbjct: 612 SEGPTTRGRIQKKRNGRSVGAVGLHNLGNTCYMNSALQCVRSVEELTKYFLTDAYVSELN 671

Query: 314 WQNPLGM-----------------------------------------------VELLAF 326
             NPLG                                                 E L F
Sbjct: 672 KTNPLGYNGKVAMAYGSLLREIYDEGRGSVSPRDFKNTVGRCRSTFAGWGQQDSQEFLGF 731

Query: 327 LLDGLHEDLNRVKHKPYIKSKDAD----GRPD--EEVADEYWANHIARNDSIIVDVCQGQ 380
           LLD L EDL+R+K KPYI+  D+       P+  +E+AD+ W     R+DS+I D+  G 
Sbjct: 732 LLDALQEDLSRIKKKPYIEKPDSTDDMINNPEAIKEMADKVWDITRKRDDSVIADLFTGM 791

Query: 381 YKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGR 440
           YKSTL CP C K+S+TFDPF  L+LPL      + TV  F  +   +P  + V +PKH  
Sbjct: 792 YKSTLKCPECGKISITFDPFNNLTLPLPVENMWSKTVKFFPLND--VPVMFEVELPKHSS 849

Query: 441 CRDLIQVLGNICSLK 455
               I+ L +  S++
Sbjct: 850 ----IEALKSFLSIR 860


>gi|327288428|ref|XP_003228928.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like [Anolis
            carolinensis]
          Length = 1066

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 69/151 (45%), Positives = 100/151 (66%), Gaps = 1/151 (0%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A T   +L  C   F +EE L   + +YC  CK RR + KK+++W+LP VL++HLKRFSY
Sbjct: 905  ASTSKCTLQECFRLFSKEEKLTDNNRFYCSHCKTRRDSLKKIEIWKLPPVLLVHLKRFSY 964

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
                K KL+T V+FP+   ++++YV    S+ ++ Y L+A++NHYGG+  GHYTA+ K  
Sbjct: 965  DGRWKQKLQTSVDFPLESLDVSQYVIGPKSNSKR-YNLFAVSNHYGGLDGGHYTAYCKNA 1023

Query: 795  DENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
             + RWY FDD  +S I+   VKS+AAY+LFY
Sbjct: 1024 TKQRWYKFDDHEVSEISTSSVKSSAAYILFY 1054



 Score =  123 bits (308), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/194 (38%), Positives = 95/194 (48%), Gaps = 48/194 (24%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------- 321
           G    LTGL NLGNTC+MNS +QCL + P  A YF R  Y+ +IN  N LG         
Sbjct: 719 GMGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNYYQVDINRSNFLGHKGEVAEEF 778

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELL FL+D LHEDLN+  ++
Sbjct: 779 GIIMKALWAGQYRYISPKDFKMTIGKINDQFAGYSQQDSQELLLFLMDDLHEDLNKADNR 838

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
              K ++ D   D + AD  W  H   N+SIIV + QGQ+KST+ C  C+K S TF+ FM
Sbjct: 839 KRYKEENNDDLDDPKAADLAWHKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFM 898

Query: 402 YLSLPLQATTTRTM 415
           YLSLPL +T+  T+
Sbjct: 899 YLSLPLASTSKCTL 912


>gi|195128583|ref|XP_002008742.1| GI11648 [Drosophila mojavensis]
 gi|193920351|gb|EDW19218.1| GI11648 [Drosophila mojavensis]
          Length = 1765

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/273 (38%), Positives = 136/273 (49%), Gaps = 54/273 (19%)

Query: 274  GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGM------------ 320
            G TGL NLGNTCFMN+A+Q L +T   A+YF R+ +R E+N  N LG             
Sbjct: 734  GATGLHNLGNTCFMNAALQVLFNTQPLAQYFHRQMHRFELNAANKLGTRGQLAMRYAELL 793

Query: 321  -----------------------------------VELLAFLLDGLHEDLNRVKHKPYIK 345
                                                ELL +LLD LHEDLNRV  KPY +
Sbjct: 794  KEVWTATTRSVAPLKLRFCVNKHAPQFAGGGQHDSQELLEWLLDALHEDLNRVMEKPYSE 853

Query: 346  SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
             KD+DGRPD+ VA E WA H ARN SII+D+  GQ KS + C  C   SV FDPF  LSL
Sbjct: 854  LKDSDGRPDKIVAAEAWAQHHARNQSIIIDLFYGQLKSKVSCLGCGHESVRFDPFSLLSL 913

Query: 406  PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
            PL       + V V   DGS +P  Y + +    +  DL   L  +C L+ S  L V EI
Sbjct: 914  PLPVENYVYLEVLVILLDGS-VPIKYGLRLNSECKYGDLKHKLATLCPLQPSLML-VCEI 971

Query: 466  QNHSIQRFL-DDPLISLSTIKDDDHLAAYRVPK 497
             N  I++ + D+  +   + KD   L  Y++P+
Sbjct: 972  WNSQIRQVVGDEEKLRTQSSKD---LYVYQLPE 1001



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 86/174 (49%), Gaps = 9/174 (5%)

Query: 588  NSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWS 647
            NS +N       ++K  +LPNL  +   E    +  S+    T +     T   + +DW 
Sbjct: 1388 NSMANNVGTPQMNAKCPSLPNLEAKRTTE----YTTSLSYTPTTKYFEDFT---IAIDWD 1440

Query: 648  QKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCK 707
               L       LE L    +   + ++ + EP+ L  CL AF  EE L  E  ++C  CK
Sbjct: 1441 PTALHLRYQSTLERLWVDHETIAICRREQVEPVDLNHCLRAFTSEEKL--EQWYHCSHCK 1498

Query: 708  ERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVAN 761
             ++ A+KKL +W+LP +L++HLKRF+       K +  V+FP  DF+ T Y+A+
Sbjct: 1499 GKKPATKKLQIWKLPPILIVHLKRFNCVNGKWVKSQKVVHFPFDDFDPTPYLAS 1552



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 8/89 (8%)

Query: 37  RPSGIDNSDLV------NDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGP 90
           RP  IDN++L+      N  T    G   +    L++  D+ L+P+ +W  L+ WYG   
Sbjct: 481 RPGPIDNNNLITTNPYRNVRTLTGEGGHLKRDTPLVQNHDFELVPKSLWKALNRWYGDNL 540

Query: 91  TLARKVISSGLSQTELAVEVYPLRLQLLV 119
            L R+VI    S+ EL  E+YPL L++L+
Sbjct: 541 PLPRQVIQPPNSEVEL--ELYPLNLRILL 567



 Score = 43.9 bits (102), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 770  YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINED-DVKSAAAYVLFYRR 827
            Y+LYA+ +H G +  GHY ++        WY ++DS    I++  ++  +AAY+LFY R
Sbjct: 1669 YKLYAVVSHSGMLNGGHYISYASNT-TGSWYCYNDSSCREISQKPNIDPSAAYLLFYER 1726


>gi|156044997|ref|XP_001589054.1| hypothetical protein SS1G_09687 [Sclerotinia sclerotiorum 1980]
 gi|154694082|gb|EDN93820.1| hypothetical protein SS1G_09687 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1538

 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 77/203 (37%), Positives = 117/203 (57%), Gaps = 17/203 (8%)

Query: 642  VYVDWSQK----LLEKYNTHFLENLLEVFKNGPV--------TKKAR----TEPLSLYTC 685
            + VDW+      L   YN          + N PV         +KAR     + ++L  C
Sbjct: 1063 LVVDWNDDAWDTLFGAYNDKEESRGRPTYTNLPVLHDPELVSKRKARDTRKKQGVTLEDC 1122

Query: 686  LEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETF 745
            L+ F +EE L   D WYCP+CKE R+ASKK ++WR P++L++HLKRFS S   + KL+  
Sbjct: 1123 LDEFGKEEILSEMDTWYCPRCKEHRRASKKFEIWRTPDILIMHLKRFSSSGMRRDKLDIL 1182

Query: 746  VNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDS 805
            V+FPI   +L+  V  +   + ++Y+L A+ +H+GGMG GHYTA  K   + +WY ++D+
Sbjct: 1183 VDFPIDGLDLSSRVIERQDGKEEIYDLIAVDDHWGGMGGGHYTAFAKNFVDGKWYEYNDA 1242

Query: 806  HISPINE-DDVKSAAAYVLFYRR 827
             +S   + D + +  AY+LFYRR
Sbjct: 1243 SVSQTQDLDKLVTRGAYLLFYRR 1265



 Score =  136 bits (343), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 108/326 (33%), Positives = 145/326 (44%), Gaps = 89/326 (27%)

Query: 175 LDDANIQMDQDILV-EVLDNVNG--TNCKSSIQD--NGFAEKKASSVLVEPSKSSLSIAG 229
           LD   +  DQ I+V E+++  +G  +N K S     NG   K  SS +V           
Sbjct: 380 LDFCGLGDDQAIVVDELMEGKDGYVSNTKPSPNGKLNGAGRKGNSSFIV----------- 428

Query: 230 GWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNS 289
                  +S+N+S   S +P+      S N    +G T      G  GL NLGNTC+MNS
Sbjct: 429 -------SSQNNSGRNSPAPSSGYNLRSSNRRSKNGRTP-----GTVGLSNLGNTCYMNS 476

Query: 290 AIQCLVHTPEFARYF-REDYRREINWQNPLGM---------------------------- 320
           A+QC+    E  +YF    Y+ E+N  NPLG                             
Sbjct: 477 ALQCVRSVEELTKYFLNASYKAELNGDNPLGHGGAVAESYADLLRDIYKEPPPISVQPRY 536

Query: 321 --------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDAD----GRPD-- 354
                                E + FLLDGL EDL+RVK KPYI+  D+     G P+  
Sbjct: 537 FKNTVSRFATQFSGYGQQDSQEFIGFLLDGLQEDLSRVKKKPYIEKPDSTDEMIGNPEAI 596

Query: 355 EEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPF--MYLSLPLQATTT 412
            E+A + W     R+DS+I D+  G YKSTLVCP C+KVS+TFDPF  M L LP++   T
Sbjct: 597 REMATKVWDITKQRDDSVIADLFTGMYKSTLVCPHCDKVSITFDPFNNMTLQLPIENMWT 656

Query: 413 RTMTVTVFTSDGSALPSTYTVTVPKH 438
           RT+            P +  V + KH
Sbjct: 657 RTVAFFPLND----RPVSIAVEIDKH 678


>gi|308469287|ref|XP_003096882.1| hypothetical protein CRE_24714 [Caenorhabditis remanei]
 gi|308241297|gb|EFO85249.1| hypothetical protein CRE_24714 [Caenorhabditis remanei]
          Length = 901

 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 131/401 (32%), Positives = 184/401 (45%), Gaps = 90/401 (22%)

Query: 65  LLEGRDYILLPQEVWNQLHSWYG----GGPTLARKVISSGLSQTELAVEVYPLRLQL-LV 119
           L E  DY  +P+ ++ +L S+YG        + R VI       +L+VEVYP  + + L 
Sbjct: 96  LAEQIDYTAVPEHLFKRLVSFYGVEDERRDYIRRTVIKKN---GQLSVEVYPRIVHIALA 152

Query: 120 MPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDAN 179
             R   + + +  ++T+  L  RA  I  L+L +     +Y      +MND    L D +
Sbjct: 153 RNRDIKADLVLKPEDTMISLRERA--IMELSLNESDKIRFY------VMNDETPELIDTS 204

Query: 180 IQMDQ--DILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGT 237
             +D   D + +VL +V         +   F  K  + V  +P  S  S +     S G 
Sbjct: 205 QSIDSYFDTVQKVLVDVE--------EQGEFFYKAQNPVQQQPKLSFASQSSSSLGSNGN 256

Query: 238 SRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHT 297
             +++    +S              S+G+  R  + G  GL NLGNTCFM SA QCL + 
Sbjct: 257 GLSNAYSAQSS--------------STGIANR-TTPGACGLSNLGNTCFMASAFQCLSNM 301

Query: 298 PEFARYFRED-YRREINWQNPLGMV----------------------------------- 321
           P    YF  D Y  ++N +NPLG                                     
Sbjct: 302 PPLRDYFLNDSYLSDLNVENPLGTHGHLAAAVGELMKGMWSGEFASINPRKFKGIIGQFA 361

Query: 322 ------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGR-PDEEVADEYWANHIAR 368
                       EL+A++LDGLHEDLNR+K KPYI+  D D + P+ E A + W  +  R
Sbjct: 362 PRFNGYSQQDAHELMAYVLDGLHEDLNRIKKKPYIEDSDEDAKLPEAEYAAKSWEIYKMR 421

Query: 369 NDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQA 409
           NDSIIVD   GQ KSTL+CPVC K+S+ FDPF YLSLPL A
Sbjct: 422 NDSIIVDTLHGQLKSTLICPVCEKISIKFDPFGYLSLPLPA 462



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 65/149 (43%), Positives = 96/149 (64%), Gaps = 5/149 (3%)

Query: 682 LYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHK 741
           L   LE F ++E L  +D WYCPQCK+  +A+K+LDLW+LPE+L++HLKRF Y++  + K
Sbjct: 699 LEETLEWFTKKEQLGEQDSWYCPQCKKHERATKQLDLWKLPEILILHLKRFQYTKWSREK 758

Query: 742 LETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-WY 800
           L   V  P+   +LT  VAN N   + +Y+L A++ HYG +  GHYTA I   D+ R W+
Sbjct: 759 LTWEVVIPVRGLDLTDKVANPNHE-KAIYDLIAVSRHYGSLSGGHYTA-IGFNDKARKWF 816

Query: 801 NFDDSHISPINE--DDVKSAAAYVLFYRR 827
           +F+DS  S  +   +  +S+  Y+L YRR
Sbjct: 817 DFNDSSASSTSSPTEPYESSDPYILVYRR 845


>gi|298712288|emb|CBJ26739.1| similar to ubiquitin specific peptidase 15 [Ectocarpus siliculosus]
          Length = 1360

 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 89/225 (39%), Positives = 114/225 (50%), Gaps = 52/225 (23%)

Query: 268 TRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFR-EDYRREINWQNPLGM------ 320
           TRGA     GL NLGNTCFMNS +QCL+ T   + YFR + ++RE+N  NPLGM      
Sbjct: 538 TRGA----VGLSNLGNTCFMNSMLQCLLATESLSTYFRSQHWKREVNEDNPLGMGGKMAA 593

Query: 321 -----------------------------------------VELLAFLLDGLHEDLNRVK 339
                                                     EL++FLLDG+HEDLNRV 
Sbjct: 594 AYAGLNDDAWSGEYSVVVPNTVKKVVSQYAPMFAGYQQHDASELMSFLLDGIHEDLNRVH 653

Query: 340 HKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDP 399
            KPY+++ D+ GR D  VA+E W  ++ RNDS++VD C G  +S + CP CN  SVTFDP
Sbjct: 654 KKPYMETVDSAGRADRVVAEESWRRYLMRNDSVMVDTCTGLLRSHVTCPECNLSSVTFDP 713

Query: 400 FMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDL 444
           +  LSLPL   T   + V        + P    VT+ K    RDL
Sbjct: 714 YTSLSLPLPFDTAVMVKVLFHPLPYGSRPMEVAVTLQKDNTVRDL 758



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/189 (36%), Positives = 107/189 (56%), Gaps = 15/189 (7%)

Query: 654  YNTHFL--ENLLEVFKNGPVTKKART-----EPLSLYTCLEAFLREEPLVPEDMWYCPQC 706
            Y  H L  ++ LE     P  +KA       + + + +C E F   E L   ++WYC +C
Sbjct: 1156 YEPHSLVDKDELEATDTHPSVRKAEEAQNERQSVPIDSCFEKFTECEELGQSELWYCSRC 1215

Query: 707  KERRQASKKLDLWRLPEVLVIHLKRFSYSRSM----KHKLETFVNFPIHDFNLTKYVANK 762
            K  RQASKKLD++  P+VL++ LKRF ++       + KL+T V+FPI   +LT+ +   
Sbjct: 1216 KTHRQASKKLDVYSAPDVLIVVLKRFLFTPGALTVYRQKLDTHVSFPIEGLDLTRNIQRA 1275

Query: 763  NS----SRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSA 818
                      +Y+L+A++ H G + +GHYTA  +  ++ +WY+F+DSH+SP   D   S+
Sbjct: 1276 GGPIFKEAPPVYDLFAVSEHSGSLRAGHYTAIAQNSEDKKWYSFNDSHVSPTTPDKGPSS 1335

Query: 819  AAYVLFYRR 827
              YVLFYRR
Sbjct: 1336 EPYVLFYRR 1344



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 62/120 (51%), Gaps = 21/120 (17%)

Query: 38  PSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVI 97
           P  IDN  L         G G E+ +TL+EG DY+LL    +  L +WYGGGP   R V+
Sbjct: 126 PGPIDNRTL---------GEGRELRETLMEGEDYVLLHNRAYELLEAWYGGGPRFKRWVV 176

Query: 98  SSG-LSQTELAVEVYPLRLQLLV-MPRGECSTIRISKKETIGELHRRACSIFYLNLEQIC 155
           S G  ++T+L VE++P+R  +   +P G      +S      +L+ RA +     + QIC
Sbjct: 177 SLGDDARTQLTVELFPVRFMVYTCLPDGRADEDSVSV-----QLYSRAKT-----MRQIC 226


>gi|543824|sp|Q01988.1|UBP11_CANFA RecName: Full=Ubiquitin carboxyl-terminal hydrolase 11; AltName:
           Full=Deubiquitinating enzyme 11; AltName: Full=Ubiquitin
           thioesterase 11; AltName:
           Full=Ubiquitin-specific-processing protease 11
 gi|164026|gb|AAA30875.1| mucin c-terminus, partial [Canis lupus familiaris]
          Length = 445

 Score =  154 bits (388), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 81/190 (42%), Positives = 119/190 (62%), Gaps = 7/190 (3%)

Query: 642 VYVDWSQKLLEKYNTHF-LENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
           + +DW  ++ ++Y      E  ++    G V KKA   P+ L  C+E F   E L  E+ 
Sbjct: 225 IAIDWEPEMKKRYYDEVEAEGYVKHDCVGYVLKKA---PVRLQECIELFTTVETLEKENP 281

Query: 701 WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
           W+CP CK+ + A+KKLDLW LPE L+IHLKRFSY++  + KL+T V FPI D + +++V 
Sbjct: 282 WFCPTCKQHQLATKKLDLWMLPETLIIHLKRFSYTKFSREKLDTLVEFPIRDLDFSEFVI 341

Query: 761 N-KNSSRRQL--YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKS 817
             +N S  +L  Y+L A++NHYGG+  GHYT      D  +   FDD+ +SP+ E+ ++S
Sbjct: 342 KPQNESAPELYKYDLIAVSNHYGGLRDGHYTTFACNKDSGQSDYFDDNSVSPVTENQIES 401

Query: 818 AAAYVLFYRR 827
            AAYVLFY+R
Sbjct: 402 KAAYVLFYQR 411


>gi|449474137|ref|XP_004176996.1| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal
           hydrolase 19 [Taeniopygia guttata]
          Length = 855

 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 85/224 (37%), Positives = 131/224 (58%), Gaps = 13/224 (5%)

Query: 614 VDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTK 673
           +D +N    L  +GD T+ +    +  +V+ +   + L+++     + L  V   G  ++
Sbjct: 559 IDSANREHKLEDKGDTTLDLTDDCSLXLVWKN--NERLKEFVLVESKELECVEDPGSASE 616

Query: 674 KARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFS 733
            AR    +L  CL  F + E L PE+ WYCP+CK+ R+ASK+L LWRLP VL+I LKRFS
Sbjct: 617 AARAGHFTLEQCLNLFTKPEVLAPEEAWYCPKCKQHREASKQLMLWRLPNVLIIQLKRFS 676

Query: 734 YSRSM--KHKLETFVNFPIHDFNLTKY-VANKNSSRRQLYELYALTNHYGGMGSGHYTAH 790
           + RS   + K+   V+FP+   +L+K+ +  K   +  +Y+LYA+ NHYGGM  GHYTA+
Sbjct: 677 F-RSFIWRDKINDMVDFPVRSLDLSKFCIGRKGEQQLPVYDLYAVINHYGGMIGGHYTAY 735

Query: 791 IKLLDENR-------WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            +L ++         W  FDDS ++ ++E  V +  AYVLFYRR
Sbjct: 736 ARLPNDKNSQRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRR 779



 Score =  145 bits (366), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 65/116 (56%), Positives = 85/116 (73%), Gaps = 1/116 (0%)

Query: 322 ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQY 381
           E +AFLLDGLHEDLNR+++KPY ++ D+DGRPDE VA+E W  H  RNDS IVD+ QGQY
Sbjct: 263 EFMAFLLDGLHEDLNRIQNKPYTETVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQY 322

Query: 382 KSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPK 437
           KS LVCP+C+KVS+TFDPF+YL +PL     + +TV  F  +    P  + V++ K
Sbjct: 323 KSKLVCPMCSKVSITFDPFLYLPVPL-PQKQKVLTVYYFAKEPHKKPIKFLVSISK 377


>gi|355753758|gb|EHH57723.1| Ubiquitin carboxyl-terminal hydrolase 43 [Macaca fascicularis]
          Length = 1062

 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 129/499 (25%), Positives = 218/499 (43%), Gaps = 102/499 (20%)

Query: 388 PVCNKVSVTFDPFMYLSLPLQATTTRTMTVTV--------FTSDGSALPSTYTVTVPKHG 439
           PV  K S TFDPF+ +SLP+    TR ++VT+        F   G A+P   TV V    
Sbjct: 193 PVLEK-SNTFDPFLCVSLPIPLRQTRFLSVTLVFPSKSQRFLRVGLAVPILSTVAV---- 247

Query: 440 RCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTIKDDDHLAAYRVPK- 497
             R ++   G +     ++E+ + E+     QR F D+    L+TI + D++ A++VP  
Sbjct: 248 -LRRMVAEEGGV----PADEVILVELYPSGFQRSFFDEE--DLNTIAEGDNVYAFQVPPS 300

Query: 498 -----LVKKAVFLQLIHRLQEQEP---------------------GAAQTTSQWKAYGTP 531
                L    + L +  RL  +E                      G+ Q  S+   +G P
Sbjct: 301 PSQGTLSAHPLALSVSPRLAAREGQRFSLSLHSESKVLILFCNLVGSGQQASR---FGPP 357

Query: 532 LVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSS 591
            +  I  D  +S  ++Q ++   +   +K E+ +                      N  S
Sbjct: 358 FL--IREDRAVSWAQLQQSILSKVRHLMKSEAPVQ---------------------NLGS 394

Query: 592 NIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLL 651
             +      S A +     L   D   +C   +V+    +R P     + + V+W   + 
Sbjct: 395 LFSIRVVGLSVACSY----LSPKDSRPLC-HWAVDRALHLRRPGGPPHVKLAVEWDSSVK 449

Query: 652 EKYNTHFLENLLEVFKN-GPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERR 710
           E+   +  E   +   +     +  +    +L  C + + +EE L  +D W CP C+  +
Sbjct: 450 ERLFGNLQEERAQDADSVWQQQQAHQQHSCTLDECFQFYTKEEQLAQDDAWKCPHCQVLQ 509

Query: 711 QASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQ-- 768
           Q   KL LW LP++L+IHLKRF      ++KL T V FP+   N+  +VA +++S     
Sbjct: 510 QGMVKLSLWTLPDILIIHLKRFCQVGERRNKLSTLVKFPLSGLNMAPHVAQRSTSPEAGL 569

Query: 769 --------------------LYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHIS 808
                               LY+LYA+ NH+G +  GHYTA+ +   + +WY++DDS + 
Sbjct: 570 GPWPSWKPPGCLPTSCPLDFLYDLYAVCNHHGNLQGGHYTAYCRNSLDGQWYSYDDSTVE 629

Query: 809 PINEDDVKSAAAYVLFYRR 827
           P+ ED+V +  AY+LFY++
Sbjct: 630 PLREDEVNTRGAYILFYQK 648


>gi|156380826|ref|XP_001631968.1| predicted protein [Nematostella vectensis]
 gi|156219017|gb|EDO39905.1| predicted protein [Nematostella vectensis]
          Length = 1526

 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 101/272 (37%), Positives = 133/272 (48%), Gaps = 52/272 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV----------- 321
           G TGL NLGNTCFMNSA+QCL +T    ++F    +  E+N  NPLGM            
Sbjct: 654 GATGLSNLGNTCFMNSALQCLSNTQPLTQFFTAKCHYYELNRTNPLGMKGHIARRYGDLV 713

Query: 322 ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E L+FLLDGLHEDLNRV  KPY++
Sbjct: 714 EDLWSGSSRSLAPLKLRWTIGRYAPRFNGFQQHDAQEFLSFLLDGLHEDLNRVHDKPYVE 773

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
            KD+DGR DE VA E W NHI RN SIIVD+ QGQ KS + C  C  VS  FDPF +LSL
Sbjct: 774 LKDSDGRLDEIVAQEAWDNHIKRNQSIIVDLFQGQLKSQVRCVECGYVSARFDPFTFLSL 833

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
           PL    +  + + V    G A P  Y + +    + + + + L  +C +  ++ L V E+
Sbjct: 834 PLPMDNSIFIEIVVVPLSG-ATPVKYGLLLNNDDKYKAVRKELAKLCVINVAQLLLV-EV 891

Query: 466 QNHSIQRFLDDPLISLSTIKDDDHLAAYRVPK 497
              +++    D     S +     L AY VP+
Sbjct: 892 YGATVKSLPTDSQKIRSAL--GGILYAYEVPE 921



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 72/126 (57%)

Query: 637  STSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLV 696
            ++S  + ++W    L       LE   E  ++   +++ +TEP+ LY CL AF  EE L 
Sbjct: 1136 NSSSYIAIEWDPTTLHLRYQSSLEKNCEEHESVERSRRLQTEPIDLYECLRAFTNEEELG 1195

Query: 697  PEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLT 756
             E++WYC +CK+ R A KKL++W LP +LVIHLKRF Y      K    VN+P+  F+ +
Sbjct: 1196 DEELWYCNKCKKHRLAVKKLEIWSLPPILVIHLKRFQYVNGHWVKSNKIVNYPMAGFDPS 1255

Query: 757  KYVANK 762
             ++  +
Sbjct: 1256 AFLVPR 1261



 Score = 53.1 bits (126), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 38  PSGIDNSDLVNDATAED---PGAGPEIVDTLLEGR--DYILLPQEVWNQLHSWYGGGPTL 92
           P  IDN+ L+   T +     G G  +  ++  GR  D+ +LP+ VW  L +WYGGGP L
Sbjct: 453 PGQIDNTSLIEPETRKVMILTGEGGRLKRSVPLGRVRDFEILPEPVWRALLTWYGGGPAL 512

Query: 93  ARKVISSGLSQTELAVEVYPLRLQL 117
            R V+          +E++PL L++
Sbjct: 513 PRTVVVPLNGDCTPELELFPLNLKI 537



 Score = 46.2 bits (108), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 757  KYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVK 816
            +Y A+  S +  +Y LYA++ H G +G GHY ++    +  +WY ++DS     + + + 
Sbjct: 1420 RYRASSMSFKTPVYRLYAMSCHSGVLGGGHYISYSHNPN-GKWYCYNDSSCKECDVNKMH 1478

Query: 817  SAAAYVLFYRR 827
              + Y+LFY++
Sbjct: 1479 VDSPYLLFYQQ 1489


>gi|403335950|gb|EJY67162.1| Ubiquitin carboxyl-terminal hydrolase [Oxytricha trifallax]
          Length = 1162

 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 78/182 (42%), Positives = 106/182 (58%), Gaps = 48/182 (26%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM------------ 320
           G+TGL NLGNTCFMNS +QCL +T E  +YF  + ++++IN  NPLGM            
Sbjct: 528 GVTGLQNLGNTCFMNSGLQCLSNTIELTKYFCNNMHKQDINKDNPLGMKGQLALTYGELI 587

Query: 321 -----------------------------------VELLAFLLDGLHEDLNRVKHKPYIK 345
                                               EL+ +++D +HEDLNRVK KPY++
Sbjct: 588 KEMWMSGSARTAPHELKKVVGKRVTKFSGFGQQDSCELINYVIDLMHEDLNRVKKKPYVE 647

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
            +D++GRPD+EVA E+W   IARN SIIVD+  GQYKST+ C  C  +S+TFDPF+ LS+
Sbjct: 648 MQDSNGRPDQEVAQEHWDAFIARNRSIIVDLMYGQYKSTVQCQECGFISITFDPFLTLSV 707

Query: 406 PL 407
           P+
Sbjct: 708 PI 709



 Score =  139 bits (349), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 102/173 (58%), Gaps = 18/173 (10%)

Query: 673  KKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF 732
            +K + + ++L TCL+A+ REE L  +D WYC +CKE+R   KKL+L++LP++L+I LKRF
Sbjct: 988  QKKKKDLITLDTCLKAYSREELLTGQDQWYCKECKEQRDIHKKLELYKLPKILIIQLKRF 1047

Query: 733  SYSRSM------------------KHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYA 774
               R                    + K+   V+FP+   +L  ++ + ++     Y+LYA
Sbjct: 1048 QSKRGAGNSKQGGFMAMAMAQVLHQEKVSELVDFPVEGLDLRPFIIDDSTDTPIYYDLYA 1107

Query: 775  LTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            ++NHYG +  GHYTA+      N+W+ F+DSH+S     +V +  AY+LFYRR
Sbjct: 1108 VSNHYGSLNGGHYTAYAFNSMYNKWFEFNDSHVSQATPQEVVTQGAYLLFYRR 1160


>gi|349579011|dbj|GAA24174.1| K7_Ubp12p [Saccharomyces cerevisiae Kyokai no. 7]
          Length = 1254

 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 72/153 (47%), Positives = 104/153 (67%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A+   ++L  CL+ F + E L   D WYCP CKE RQA+K++ LW  P++L+IHLKRF  
Sbjct: 957  AKERTITLDDCLQLFSKPEILGLTDSWYCPTCKEHRQATKQIQLWNTPDILLIHLKRFES 1016

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
             RS   K++  VNFPI D +L++YV  K+  R  +Y+LYA+ NHYGG+G GHYTA++K  
Sbjct: 1017 QRSFSDKIDATVNFPITDLDLSRYVVYKDDPRGLIYDLYAVDNHYGGLGGGHYTAYVKNF 1076

Query: 795  DENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             +N+WY FDDS ++    ++  + +AY+LFY R
Sbjct: 1077 ADNKWYYFDDSRVTETAPENCIAGSAYLLFYIR 1109



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 107/349 (30%), Positives = 149/349 (42%), Gaps = 82/349 (23%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPL---GMV-------- 321
           G TGL+NLGNTC+MNSA+QCLVH P+   YF  D Y  EIN +NPL   G V        
Sbjct: 362 GTTGLVNLGNTCYMNSALQCLVHIPQLRDYFLYDGYEDEINEENPLGYHGYVARAFSDLV 421

Query: 322 ------------------------------------------ELLAFLLDGLHEDLNRVK 339
                                                     E LAFLLD LHEDLNR+ 
Sbjct: 422 QKLFQNRMSIMQRNAAFPPSMFKSTIGHFNSMFSGYMQQDSQEFLAFLLDSLHEDLNRII 481

Query: 340 HKPYIKSKDADGRPD-------EEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNK 392
            K Y +        D       +++AD+ W  H+ RN S+I D+  G YKSTL CP C  
Sbjct: 482 KKEYTEKPSLSPGDDVNDWNVVKKLADDTWEMHLKRNCSVITDLFVGMYKSTLYCPECQN 541

Query: 393 VSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNIC 452
           VS+TFDP+  ++LPL   T    T+ +F  +    P    V + K     DL   +G + 
Sbjct: 542 VSITFDPYNDVTLPLPVDTVWDKTIKIFPMNSP--PLLLEVELSKSSTYMDLKNYVGKMS 599

Query: 453 SLKQ---------SEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAV 503
            L           S ++ V      S  +FL   L  L  IK  D +  Y +P      V
Sbjct: 600 GLDPNTLFGCEIFSNQIYVNYESTESNAQFL--TLQEL--IKPADDVIFYELPVANDNEV 655

Query: 504 FLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQ 552
            + +++   E+    A        +G P   ++  D++ + G I+  +Q
Sbjct: 656 IVPVLNTRIEKGYKNAM------LFGVPFFITLKEDELNNPGAIRMKLQ 698


>gi|156370210|ref|XP_001628364.1| predicted protein [Nematostella vectensis]
 gi|156215339|gb|EDO36301.1| predicted protein [Nematostella vectensis]
          Length = 409

 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 68/162 (41%), Positives = 102/162 (62%), Gaps = 2/162 (1%)

Query: 664 EVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPE 723
           E F N  +     +   SL  C++ F R E +  +DMWYCP+CK+ R ASK+L +WRLP 
Sbjct: 239 ETFSNLTLPLPGNSNHCSLRDCIKLFTRAERMSGDDMWYCPRCKQHRVASKQLQIWRLPP 298

Query: 724 VLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMG 783
           +L++HLKRF Y    + KL+T V+FP+   +++ Y+     ++R  Y LY ++NHYG M 
Sbjct: 299 ILIVHLKRFQYDGMWRQKLQTAVSFPVDGLDMSGYIT--GPTKRPAYHLYGVSNHYGTMH 356

Query: 784 SGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
            GHYTA  K     RW+ FDD  ++ ++ +D+ S+AAY+LFY
Sbjct: 357 GGHYTAFCKNAHNQRWFKFDDQVVTEMSANDIVSSAAYLLFY 398



 Score =  109 bits (273), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 90/170 (52%), Gaps = 39/170 (22%)

Query: 280 NLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLG------------------- 319
           NLGNTC+MNS +QCL +T   A YF    +R +IN +NPLG                   
Sbjct: 84  NLGNTCYMNSVLQCLFNTAPLAAYFVSGAFRDDINKENPLGTSGMYLDFYFITSINFSFY 143

Query: 320 ------------------MVELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEY 361
                               E LA ++D LHED+ +++HKPY+K+ D +  P  E A+  
Sbjct: 144 LTSSPEFFTTFEGVCQQDFQEFLALMMDKLHEDVCQIRHKPYLKAPDDNIDP-AEAANIT 202

Query: 362 WANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATT 411
           W NH  RN+S+++++  G +KST+ C VC K SVT++ F  L+LPL   +
Sbjct: 203 WDNHRKRNESLMLNLFDGMFKSTVRCLVCAKDSVTYETFSNLTLPLPGNS 252


>gi|145520625|ref|XP_001446168.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124413645|emb|CAK78771.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1160

 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 90/266 (33%), Positives = 133/266 (50%), Gaps = 52/266 (19%)

Query: 268 TRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGM------ 320
            + ++ G+ GL NLGNTCFMNS++QCL +  E   Y     + +++N +NPLG       
Sbjct: 548 VKNSAKGICGLSNLGNTCFMNSSLQCLSNVTELTEYMIYNTFLQDLNEKNPLGTGGRLAC 607

Query: 321 -----------------------------------------VELLAFLLDGLHEDLNRVK 339
                                                     ELL++LLDGLHEDLNR+K
Sbjct: 608 NYAELLKELYESTSTSVAPWNVKKIIGQQAPQFNGYSQQDSQELLSYLLDGLHEDLNRIK 667

Query: 340 HKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDP 399
            KPYI   +  G+ D+E AD YW NH  RNDS I D+  GQ+KS + CP CN VS+TFDP
Sbjct: 668 KKPYIPDVEYKGQSDQEFADLYWDNHKKRNDSKITDLFTGQFKSRVECPECNFVSITFDP 727

Query: 400 FMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEE 459
           F+ +SLP+ +         +   D    P     T+       ++I+++  + ++K +E 
Sbjct: 728 FVTISLPIPSKEFVQFQFYLIFRDSKQTPLKIQQTLQSTQTAGEIIEIISKLKNIK-AEY 786

Query: 460 LKVAEIQNHSIQRFLDDPLISLSTIK 485
           LK   +Q+ +I   +D+ + S  TIK
Sbjct: 787 LKFYSLQDSAI---IDNGISSEQTIK 809



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 103/164 (62%), Gaps = 11/164 (6%)

Query: 674  KARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFS 733
            ++  + ++L  CL  F  EE L   + WYC +CK+ ++A K++ +++ P+++++HLKRF 
Sbjct: 994  QSSMQAITLNDCLNQFCSEEVLGAGNEWYCSKCKKHQKAKKQMQIYKAPQIMIMHLKRFR 1053

Query: 734  YSRSMKH----------KLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMG 783
             SR  +           K+  +V+FP+ +FN+  ++  K S +  +Y+L+A++NHYGGMG
Sbjct: 1054 SSRVTQFYGTYSVGGVTKIVQYVDFPVENFNIQPFILEKESQQPYVYDLFAVSNHYGGMG 1113

Query: 784  SGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             GHYTA+ K    N W++F+DS +  +    V + AAYVLFYRR
Sbjct: 1114 GGHYTAYAKNPMYNAWFDFNDSQVKELRSSPV-TDAAYVLFYRR 1156


>gi|29476902|gb|AAH48269.1| USP19 protein, partial [Homo sapiens]
          Length = 436

 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 136/264 (51%), Gaps = 27/264 (10%)

Query: 581 PSGEAHSNSSSNIAK-EDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTS 639
           P+GE  S   + +   +  S +     P   +  +D SN    L  +GD         T 
Sbjct: 115 PAGERVSRPEAAVPGYQHPSEAMNAHTPQFFIYKIDSSNREQRLEDKGD---------TP 165

Query: 640 IVVYVDWSQKLLEKYNTHFLENLLEVFKN-------GPVTKKARTEPLSLYTCLEAFLRE 692
           + +  D S  L+ + N    E +L   K        G   + AR    +L  CL  F R 
Sbjct: 166 LELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGEAARAGHFTLDQCLNLFTRP 225

Query: 693 EPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPI 750
           E L PE+ WYCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+
Sbjct: 226 EVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPV 284

Query: 751 HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-------WYNFD 803
            + +L+K+   +   +   Y+LYA+ NHYGGM  GHYTA  +L ++         W  FD
Sbjct: 285 RNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFD 344

Query: 804 DSHISPINEDDVKSAAAYVLFYRR 827
           DS ++ ++E  V +  AYVLFYRR
Sbjct: 345 DSTVTTVDESQVVTRYAYVLFYRR 368


>gi|403361870|gb|EJY80649.1| Ubiquitin carboxyl-terminal hydrolase [Oxytricha trifallax]
          Length = 1163

 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 78/182 (42%), Positives = 106/182 (58%), Gaps = 48/182 (26%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM------------ 320
           G+TGL NLGNTCFMNS +QCL +T E  +YF  + ++++IN  NPLGM            
Sbjct: 529 GVTGLQNLGNTCFMNSGLQCLSNTIELTKYFCNNMHKQDINKDNPLGMKGQLALTYGELI 588

Query: 321 -----------------------------------VELLAFLLDGLHEDLNRVKHKPYIK 345
                                               EL+ +++D +HEDLNRVK KPY++
Sbjct: 589 KEMWMSGSARTAPHELKKVVGKRVTKFSGFGQQDSCELINYVIDLMHEDLNRVKKKPYVE 648

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
            +D++GRPD+EVA E+W   IARN SIIVD+  GQYKST+ C  C  +S+TFDPF+ LS+
Sbjct: 649 MQDSNGRPDQEVAQEHWDAFIARNRSIIVDLMYGQYKSTVQCQECGFISITFDPFLTLSV 708

Query: 406 PL 407
           P+
Sbjct: 709 PI 710



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 102/173 (58%), Gaps = 18/173 (10%)

Query: 673  KKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF 732
            +K + + ++L TCL+A+ REE L  +D WYC +CKE+R   KKL+L++LP++L+I LKRF
Sbjct: 989  QKKKKDLITLDTCLKAYSREELLTGQDQWYCKECKEQRDIHKKLELYKLPKILIIQLKRF 1048

Query: 733  SYSRSM------------------KHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYA 774
               R                    + K+   V+FP+   +L  ++ + ++     Y+LYA
Sbjct: 1049 QSKRGAGNSKQGGFMAMAMAQVLHQEKVSELVDFPVEGLDLRPFIIDDSTDTPIYYDLYA 1108

Query: 775  LTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            ++NHYG +  GHYTA+      N+W+ F+DSH+S     +V +  AY+LFYRR
Sbjct: 1109 VSNHYGSLNGGHYTAYAFNSMYNKWFEFNDSHVSQATPQEVVTQGAYLLFYRR 1161


>gi|71002130|ref|XP_755746.1| ubiquitin C-terminal hydrolase [Aspergillus fumigatus Af293]
 gi|66853384|gb|EAL93708.1| ubiquitin C-terminal hydrolase, putative [Aspergillus fumigatus
            Af293]
 gi|159129801|gb|EDP54915.1| ubiquitin C-terminal hydrolase, putative [Aspergillus fumigatus
            A1163]
          Length = 1694

 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 72/165 (43%), Positives = 109/165 (66%), Gaps = 1/165 (0%)

Query: 664  EVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPE 723
            E+ K   + +  +   ++LY CL+ F +EE L   D WYCP+CKE R+ASKK +LW+ P+
Sbjct: 1292 ELAKRRDLRRSRKKRGVTLYECLDEFNKEEILSENDAWYCPRCKEHRRASKKFELWKTPD 1351

Query: 724  VLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMG 783
            +LV+HLKRFS SR  + KL+  V+FP+   +++  V +    +  +Y+L+A+ NHYGG+G
Sbjct: 1352 ILVMHLKRFSASRGFRDKLDVLVDFPVEGLDMSGRVESPEEGKSLIYDLFAVDNHYGGLG 1411

Query: 784  SGHYTAHIKLLDENRWYNFDDSHIS-PINEDDVKSAAAYVLFYRR 827
             GHYTA+ K     +W  ++DS +S PI+   V + AAY+LFYRR
Sbjct: 1412 GGHYTAYAKNFMSGQWNEYNDSSVSRPIDPQSVVTPAAYLLFYRR 1456



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/240 (36%), Positives = 109/240 (45%), Gaps = 67/240 (27%)

Query: 224 SLSIAGGWSAS-KGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLG 282
           S S+  G  A  K  S N+S   S +P     R  D           G   G TGL NLG
Sbjct: 634 SGSVKNGAPAKLKNKSPNNSGRSSPAPEPIRGRRKD-----------GKPRGCTGLSNLG 682

Query: 283 NTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLG---------------------- 319
           NTC+MNSA+QC+    E   YF  D Y++++N  NPL                       
Sbjct: 683 NTCYMNSALQCVRSVEELTYYFLNDVYKKDLNPSNPLAHNGDIAKAYANLLRMLYDEAGQ 742

Query: 320 --------------------------MVELLAFLLDGLHEDLNRVKHKPYIKSKDA---- 349
                                       E L FLLDGL EDLNR++ KPYI+  D+    
Sbjct: 743 SSFAPRQFKHTIGRYGPAFSGYGQQDSQEFLLFLLDGLQEDLNRIQKKPYIEKPDSTDDM 802

Query: 350 --DGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPL 407
             D    +E A + W  + ARNDS+I D+  G YKSTLVCPVC KVS+ FDPF  L+L L
Sbjct: 803 VHDKVALKEFASKCWDIYKARNDSVITDLFAGMYKSTLVCPVCEKVSIIFDPFNNLTLQL 862


>gi|392298462|gb|EIW09559.1| Ubp12p [Saccharomyces cerevisiae CEN.PK113-7D]
          Length = 1254

 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 72/153 (47%), Positives = 104/153 (67%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A+   ++L  CL+ F + E L   D WYCP CKE RQA+K++ LW  P++L+IHLKRF  
Sbjct: 957  AKERTITLDDCLQLFSKPEILGLTDSWYCPTCKEHRQATKQIQLWNTPDILLIHLKRFES 1016

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
             RS   K++  VNFPI D +L++YV  K+  R  +Y+LYA+ NHYGG+G GHYTA++K  
Sbjct: 1017 QRSFSDKIDATVNFPITDLDLSRYVVYKDDPRGLIYDLYAVDNHYGGLGGGHYTAYVKNF 1076

Query: 795  DENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             +N+WY FDDS ++    ++  + +AY+LFY R
Sbjct: 1077 ADNKWYYFDDSRVTETAPENSIAGSAYLLFYIR 1109



 Score =  135 bits (340), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 107/349 (30%), Positives = 149/349 (42%), Gaps = 82/349 (23%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPL---GMV-------- 321
           G TGL+NLGNTC+MNSA+QCLVH P+   YF  D Y  EIN +NPL   G V        
Sbjct: 362 GTTGLVNLGNTCYMNSALQCLVHIPQLRDYFLYDGYEDEINEENPLGYHGYVARAFSDLV 421

Query: 322 ------------------------------------------ELLAFLLDGLHEDLNRVK 339
                                                     E LAFLLD LHEDLNR+ 
Sbjct: 422 QKLFQNRMSIMQRNAAFPPSMFKSTIGHFNSMFSGYMQQDSQEFLAFLLDSLHEDLNRII 481

Query: 340 HKPYIKSKDADGRPD-------EEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNK 392
            K Y +        D       +++AD+ W  H+ RN S+I D+  G YKSTL CP C  
Sbjct: 482 KKEYTEKPSLSPGDDVNDWNVVKKLADDTWEMHLKRNCSVITDLFVGMYKSTLYCPECQN 541

Query: 393 VSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNIC 452
           VS+TFDP+  ++LPL   T    T+ +F  +    P    V + K     DL   +G + 
Sbjct: 542 VSITFDPYNDVTLPLPVDTVWDKTIKIFPMNSP--PLLLEVELSKSSTYMDLKNYVGKMS 599

Query: 453 SLKQ---------SEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAV 503
            L           S ++ V      S  +FL   L  L  IK  D +  Y +P      V
Sbjct: 600 GLDPNTLFGCEIFSNQIYVNYESTESNAQFL--TLQEL--IKPADDVIFYELPVTNDNEV 655

Query: 504 FLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQ 552
            + +++   E+    A        +G P   ++  D++ + G I+  +Q
Sbjct: 656 IVPVLNTRIEKGYKNAM------LFGVPFFITLKEDELNNPGAIRMKLQ 698


>gi|151944937|gb|EDN63192.1| ubiquitin carboxyl-terminal hydrolase [Saccharomyces cerevisiae
            YJM789]
 gi|190409319|gb|EDV12584.1| ubiquitin carboxyl-terminal hydrolase 12 [Saccharomyces cerevisiae
            RM11-1a]
          Length = 1254

 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 72/153 (47%), Positives = 104/153 (67%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A+   ++L  CL+ F + E L   D WYCP CKE RQA+K++ LW  P++L+IHLKRF  
Sbjct: 957  AKERTITLDDCLQLFSKPEILGLTDSWYCPTCKEHRQATKQIQLWNTPDILLIHLKRFES 1016

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
             RS   K++  VNFPI D +L++YV  K+  R  +Y+LYA+ NHYGG+G GHYTA++K  
Sbjct: 1017 QRSFSDKIDATVNFPITDLDLSRYVVYKDDPRGLIYDLYAVDNHYGGLGGGHYTAYVKNF 1076

Query: 795  DENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             +N+WY FDDS ++    ++  + +AY+LFY R
Sbjct: 1077 ADNKWYYFDDSRVTETAPENSIAGSAYLLFYIR 1109



 Score =  135 bits (340), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 107/349 (30%), Positives = 149/349 (42%), Gaps = 82/349 (23%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPL---GMV-------- 321
           G TGL+NLGNTC+MNSA+QCLVH P+   YF  D Y  EIN +NPL   G V        
Sbjct: 362 GTTGLVNLGNTCYMNSALQCLVHIPQLRDYFLYDGYEDEINEENPLGYHGYVARAFSDLV 421

Query: 322 ------------------------------------------ELLAFLLDGLHEDLNRVK 339
                                                     E LAFLLD LHEDLNR+ 
Sbjct: 422 QKLFQNRMSIMQRNAAFPPSMFKSTIGHFNSMFSGYMQQDSQEFLAFLLDSLHEDLNRII 481

Query: 340 HKPYIKSKDADGRPD-------EEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNK 392
            K Y +        D       +++AD+ W  H+ RN S+I D+  G YKSTL CP C  
Sbjct: 482 KKEYTEKPSLSPGDDVNDWNVVKKLADDTWEMHLKRNCSVITDLFVGMYKSTLYCPECQN 541

Query: 393 VSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNIC 452
           VS+TFDP+  ++LPL   T    T+ +F  +    P    V + K     DL   +G + 
Sbjct: 542 VSITFDPYNDVTLPLPVDTVWDKTIKIFPMNSP--PLLLEVELSKSSTYMDLKNYVGKMS 599

Query: 453 SLKQ---------SEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAV 503
            L           S ++ V      S  +FL   L  L  IK  D +  Y +P      V
Sbjct: 600 GLDPNTLFGCEIFSNQIYVNYESTESNAQFL--TLQEL--IKPADDVIFYELPVTNDNEV 655

Query: 504 FLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQ 552
            + +++   E+    A        +G P   ++  D++ + G I+  +Q
Sbjct: 656 IVPVLNTRIEKGYKNAM------LFGVPFFITLKEDELNNPGAIRMKLQ 698


>gi|195379442|ref|XP_002048488.1| GJ11329 [Drosophila virilis]
 gi|194155646|gb|EDW70830.1| GJ11329 [Drosophila virilis]
          Length = 1765

 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 100/251 (39%), Positives = 125/251 (49%), Gaps = 50/251 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGM------------ 320
           G TGL NLGNTCFMN+A+Q L +T   A+YF R+ +R E+N  N LG             
Sbjct: 733 GATGLHNLGNTCFMNAALQVLFNTQPLAQYFHRQMHRFELNAANKLGTRGQLAMRYAELL 792

Query: 321 -----------------------------------VELLAFLLDGLHEDLNRVKHKPYIK 345
                                               ELL +LLD LHEDLNRV  KPY +
Sbjct: 793 KEVWTATTRSVAPLKLRFCVNKHAPQFAGGGQHDSQELLEWLLDALHEDLNRVMEKPYSE 852

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
            KD++GRPD+ VA E W+ H ARN SII+D+  GQ KS + C  C   SV FDPF  LSL
Sbjct: 853 LKDSNGRPDKIVAAEAWSQHHARNQSIIIDLFYGQLKSKVSCLCCGHESVRFDPFSLLSL 912

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
           PL       + V V   DGS +P  Y V +    +  DL   L  +C L+ S  L V E+
Sbjct: 913 PLPVENYVYLEVLVILLDGS-VPIKYGVRLNSECKYGDLKHKLATLCPLQPSLML-VCEL 970

Query: 466 QNHSIQRFLDD 476
            N  I++ L D
Sbjct: 971 WNSQIRQVLAD 981



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 66/122 (54%), Gaps = 2/122 (1%)

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPED 699
              + +DW    L       LE L    +   + ++ + EP+ L  CL AF  EE L  E 
Sbjct: 1427 FTIAIDWDPTALHLRYQSTLERLWVDHETIAICRREQVEPVDLNHCLRAFTSEEKL--EQ 1484

Query: 700  MWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYV 759
             ++C  CK ++ A+KKL +W+LP +L++HLKRF+       K +  V+FP  DF+ T Y+
Sbjct: 1485 WYHCSHCKGKKPATKKLQIWKLPPILIVHLKRFNCVNGKWVKSQKVVHFPFDDFDPTPYL 1544

Query: 760  AN 761
            A+
Sbjct: 1545 AS 1546



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 8/92 (8%)

Query: 34  ASKRPSGIDNSDLV------NDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYG 87
             +RP  IDNS+L+      N  T    G   +    L++  D+ L+P+ +W  ++ WYG
Sbjct: 478 GQQRPGPIDNSNLITTNPYRNVRTLTGEGGHLKRDTPLVQNHDFELVPKSLWKAVNRWYG 537

Query: 88  GGPTLARKVISSGLSQTELAVEVYPLRLQLLV 119
               L R+VI    S+ EL  E+YPL L++L+
Sbjct: 538 DNLPLPRQVIQPPNSEVEL--ELYPLNLRILL 567



 Score = 43.9 bits (102), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 770  YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINED-DVKSAAAYVLFYRR 827
            Y+LYA+ +H G +  GHY ++        WY ++DS    I++  ++  +AAY+LFY R
Sbjct: 1667 YKLYAVVSHSGMLNGGHYISYAS-NTTGSWYCYNDSSCREISQKPNIDPSAAYLLFYER 1724


>gi|256271357|gb|EEU06422.1| Ubp12p [Saccharomyces cerevisiae JAY291]
          Length = 1254

 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 72/153 (47%), Positives = 104/153 (67%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A+   ++L  CL+ F + E L   D WYCP CKE RQA+K++ LW  P++L+IHLKRF  
Sbjct: 957  AKERTITLDDCLQLFSKPEILGLTDSWYCPTCKEHRQATKQIQLWNTPDILLIHLKRFES 1016

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
             RS   K++  VNFPI D +L++YV  K+  R  +Y+LYA+ NHYGG+G GHYTA++K  
Sbjct: 1017 QRSFSDKIDATVNFPITDLDLSRYVVYKDDPRGLIYDLYAVDNHYGGLGGGHYTAYVKNF 1076

Query: 795  DENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             +N+WY FDDS ++    ++  + +AY+LFY R
Sbjct: 1077 ADNKWYYFDDSRVTETAPENSIAGSAYLLFYIR 1109



 Score =  135 bits (340), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 107/349 (30%), Positives = 149/349 (42%), Gaps = 82/349 (23%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPL---GMV-------- 321
           G TGL+NLGNTC+MNSA+QCLVH P+   YF  D Y  EIN +NPL   G V        
Sbjct: 362 GTTGLVNLGNTCYMNSALQCLVHIPQLRDYFLYDGYEDEINEENPLGYHGYVARAFSDLV 421

Query: 322 ------------------------------------------ELLAFLLDGLHEDLNRVK 339
                                                     E LAFLLD LHEDLNR+ 
Sbjct: 422 QKLFQNRMSIMQRNAAFPPSMFKSTIGHFNSMFSGYMQQDSQEFLAFLLDSLHEDLNRII 481

Query: 340 HKPYIKSKDADGRPD-------EEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNK 392
            K Y +        D       +++AD+ W  H+ RN S+I D+  G YKSTL CP C  
Sbjct: 482 KKEYTEKPSLSPGDDVNDWNVVKKLADDTWEMHLKRNCSVITDLFVGMYKSTLYCPECQN 541

Query: 393 VSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNIC 452
           VS+TFDP+  ++LPL   T    T+ +F  +    P    V + K     DL   +G + 
Sbjct: 542 VSITFDPYNDVTLPLPVDTVWDKTIKIFPMNSP--PLLLEVELSKSSTYMDLKNYVGKMS 599

Query: 453 SLKQ---------SEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAV 503
            L           S ++ V      S  +FL   L  L  IK  D +  Y +P      V
Sbjct: 600 GLDPNTLFGCEIFSNQIYVNYESTESNAQFL--TLQEL--IKPADDVIFYELPVTNDNEV 655

Query: 504 FLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQ 552
            + +++   E+    A        +G P   ++  D++ + G I+  +Q
Sbjct: 656 IVPVLNTRIEKGYKNAM------LFGVPFFITLKEDELNNPGAIRMKLQ 698


>gi|290771039|emb|CAY80589.2| Ubp12p [Saccharomyces cerevisiae EC1118]
          Length = 1254

 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 72/153 (47%), Positives = 104/153 (67%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A+   ++L  CL+ F + E L   D WYCP CKE RQA+K++ LW  P++L+IHLKRF  
Sbjct: 957  AKERTITLDDCLQLFSKPEILGLTDSWYCPTCKEHRQATKQIQLWNTPDILLIHLKRFES 1016

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
             RS   K++  VNFPI D +L++YV  K+  R  +Y+LYA+ NHYGG+G GHYTA++K  
Sbjct: 1017 QRSFSDKIDATVNFPITDLDLSRYVVYKDDPRGLIYDLYAVDNHYGGLGGGHYTAYVKNF 1076

Query: 795  DENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             +N+WY FDDS ++    ++  + +AY+LFY R
Sbjct: 1077 ADNKWYYFDDSRVTETAPENSIAGSAYLLFYIR 1109



 Score =  135 bits (340), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 107/349 (30%), Positives = 149/349 (42%), Gaps = 82/349 (23%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPL---GMV-------- 321
           G TGL+NLGNTC+MNSA+QCLVH P+   YF  D Y  EIN +NPL   G V        
Sbjct: 362 GTTGLVNLGNTCYMNSALQCLVHIPQLRDYFLYDGYEDEINEENPLGYHGYVARAFSDLV 421

Query: 322 ------------------------------------------ELLAFLLDGLHEDLNRVK 339
                                                     E LAFLLD LHEDLNR+ 
Sbjct: 422 QKLFQNRMSIMQRNAAFPPSMFKSTIGHFNSMFSGYMQQDSQEFLAFLLDSLHEDLNRII 481

Query: 340 HKPYIKSKDADGRPD-------EEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNK 392
            K Y +        D       +++AD+ W  H+ RN S+I D+  G YKSTL CP C  
Sbjct: 482 KKEYTEKPSLSPGDDVNDWNVVKKLADDTWEMHLKRNCSVITDLFVGMYKSTLYCPECQN 541

Query: 393 VSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNIC 452
           VS+TFDP+  ++LPL   T    T+ +F  +    P    V + K     DL   +G + 
Sbjct: 542 VSITFDPYNDVTLPLPVDTVWDKTIKIFPMNSP--PLLLEVELSKSSTYMDLKNYVGKMS 599

Query: 453 SLKQ---------SEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAV 503
            L           S ++ V      S  +FL   L  L  IK  D +  Y +P      V
Sbjct: 600 GLDPNTLFGCEIFSNQIYVNYESTESNAQFL--TLQEL--IKPADDVIFYELPVTNDNEV 655

Query: 504 FLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQ 552
            + +++   E+    A        +G P   ++  D++ + G I+  +Q
Sbjct: 656 IVPVLNTRIEKGYKNAM------LFGVPFFITLKEDELNNPGAIRMKLQ 698


>gi|6322264|ref|NP_012338.1| Ubp12p [Saccharomyces cerevisiae S288c]
 gi|731045|sp|P39538.1|UBP12_YEAST RecName: Full=Ubiquitin carboxyl-terminal hydrolase 12; AltName:
            Full=Deubiquitinating enzyme 12; AltName: Full=Ubiquitin
            thioesterase 12; AltName:
            Full=Ubiquitin-specific-processing protease 12
 gi|547597|emb|CAA54762.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|1008413|emb|CAA89492.1| UBP12 [Saccharomyces cerevisiae]
 gi|285812713|tpg|DAA08611.1| TPA: Ubp12p [Saccharomyces cerevisiae S288c]
          Length = 1254

 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 72/153 (47%), Positives = 104/153 (67%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A+   ++L  CL+ F + E L   D WYCP CKE RQA+K++ LW  P++L+IHLKRF  
Sbjct: 957  AKERTITLDDCLQLFSKPEILGLTDSWYCPTCKEHRQATKQIQLWNTPDILLIHLKRFES 1016

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
             RS   K++  VNFPI D +L++YV  K+  R  +Y+LYA+ NHYGG+G GHYTA++K  
Sbjct: 1017 QRSFSDKIDATVNFPITDLDLSRYVVYKDDPRGLIYDLYAVDNHYGGLGGGHYTAYVKNF 1076

Query: 795  DENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             +N+WY FDDS ++    ++  + +AY+LFY R
Sbjct: 1077 ADNKWYYFDDSRVTETAPENSIAGSAYLLFYIR 1109



 Score =  135 bits (340), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 107/349 (30%), Positives = 149/349 (42%), Gaps = 82/349 (23%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPL---GMV-------- 321
           G TGL+NLGNTC+MNSA+QCLVH P+   YF  D Y  EIN +NPL   G V        
Sbjct: 362 GTTGLVNLGNTCYMNSALQCLVHIPQLRDYFLYDGYEDEINEENPLGYHGYVARAFSDLV 421

Query: 322 ------------------------------------------ELLAFLLDGLHEDLNRVK 339
                                                     E LAFLLD LHEDLNR+ 
Sbjct: 422 QKLFQNRMSIMQRNAAFPPSMFKSTIGHFNSMFSGYMQQDSQEFLAFLLDSLHEDLNRII 481

Query: 340 HKPYIKSKDADGRPD-------EEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNK 392
            K Y +        D       +++AD+ W  H+ RN S+I D+  G YKSTL CP C  
Sbjct: 482 KKEYTEKPSLSPGDDVNDWNVVKKLADDTWEMHLKRNCSVITDLFVGMYKSTLYCPECQN 541

Query: 393 VSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNIC 452
           VS+TFDP+  ++LPL   T    T+ +F  +    P    V + K     DL   +G + 
Sbjct: 542 VSITFDPYNDVTLPLPVDTVWDKTIKIFPMNSP--PLLLEVELSKSSTYMDLKNYVGKMS 599

Query: 453 SLKQ---------SEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAV 503
            L           S ++ V      S  +FL   L  L  IK  D +  Y +P      V
Sbjct: 600 GLDPNTLFGCEIFSNQIYVNYESTESNAQFL--TLQEL--IKPADDVIFYELPVTNDNEV 655

Query: 504 FLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQ 552
            + +++   E+    A        +G P   ++  D++ + G I+  +Q
Sbjct: 656 IVPVLNTRIEKGYKNAM------LFGVPFFITLKEDELNNPGAIRMKLQ 698


>gi|322698985|gb|EFY90750.1| ubiquitin carboxyl-terminal hydrolase [Metarhizium acridum CQMa 102]
          Length = 1602

 Score =  153 bits (386), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 76/166 (45%), Positives = 112/166 (67%), Gaps = 3/166 (1%)

Query: 663  LEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLP 722
            L++ +   VT+K R   ++L  CL+ F R E L  +DMWYCP+CKE R+ASKK DLW+ P
Sbjct: 1255 LKITQRRRVTRKTRG--ITLEECLDEFERAEILSEQDMWYCPRCKEHRRASKKFDLWKTP 1312

Query: 723  EVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGM 782
            ++LV HLKRFS S   + KL+  V+FPI   +LT  V  K   + ++Y+L  + +HYGG+
Sbjct: 1313 DILVAHLKRFSSSGWRRDKLDVLVDFPIEGLDLTSRVIQKEDGKAEIYDLIGVDDHYGGL 1372

Query: 783  GSGHYTAHIKLLDENRWYNFDDSHISPINE-DDVKSAAAYVLFYRR 827
            G GHYTA+ K   + +WYN++DS +  +++   V ++AAY+LFYRR
Sbjct: 1373 GGGHYTAYAKNFVDGQWYNYNDSSVHVVSDPTSVITSAAYLLFYRR 1418



 Score =  129 bits (324), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 82/233 (35%), Positives = 108/233 (46%), Gaps = 56/233 (24%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGM-------- 320
           G S+G  GL NLGNTC+MNSA+QC+    E  +YF  E Y  EIN  N LG         
Sbjct: 590 GRSIGAVGLHNLGNTCYMNSALQCVRSVEELTKYFLTESYFTEINKTNVLGFEGRVAIAY 649

Query: 321 ---------------------------------------VELLAFLLDGLHEDLNRVKHK 341
                                                   E L FLLD L EDL+R+K K
Sbjct: 650 GNLLREVYEEGRGSVSPRDFKSTVGRCRPTFSGWSQQDSQEFLGFLLDALQEDLSRIKKK 709

Query: 342 PYIKSKDAD----GRPD--EEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSV 395
           PYI+  D+       P+  +E+AD+ W     R+DS+I D+  G YKSTL CP C K+S+
Sbjct: 710 PYIEKPDSTDDMINNPEAIKEMADKVWDITCRRDDSVIADLFTGLYKSTLKCPECGKISI 769

Query: 396 TFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVL 448
           TFDPF  L+LPL      + +V  F  +   +P    V + +H     L Q +
Sbjct: 770 TFDPFNNLTLPLPLENMWSKSVKFFPLND--VPVKIEVELSRHSSIESLKQFI 820


>gi|119481685|ref|XP_001260871.1| ubiquitin carboxyl-terminal hydrolase, putative [Neosartorya fischeri
            NRRL 181]
 gi|119409025|gb|EAW18974.1| ubiquitin carboxyl-terminal hydrolase, putative [Neosartorya fischeri
            NRRL 181]
          Length = 1658

 Score =  153 bits (386), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 72/165 (43%), Positives = 108/165 (65%), Gaps = 1/165 (0%)

Query: 664  EVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPE 723
            E+ K   + +  +   ++LY CL+ F +EE L   D WYCP+CKE R+ASKK +LW+ P+
Sbjct: 1253 ELAKRRDLRRSRKKRGVTLYECLDEFNKEEILSENDAWYCPRCKEHRRASKKFELWKTPD 1312

Query: 724  VLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMG 783
            +LV+HLKRFS SR  + KL+  V+FP+   +++  V +    +  +Y+L+A+ NHYGG+G
Sbjct: 1313 ILVMHLKRFSASRGFRDKLDVLVDFPVEGLDMSGRVESPEEGKSLIYDLFAVDNHYGGLG 1372

Query: 784  SGHYTAHIKLLDENRWYNFDDSHIS-PINEDDVKSAAAYVLFYRR 827
             GHYTA+ K      W  ++DS +S PI+   V + AAY+LFYRR
Sbjct: 1373 GGHYTAYAKNFMSGEWNEYNDSSVSRPIDPQSVVTPAAYLLFYRR 1417



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 142/516 (27%), Positives = 205/516 (39%), Gaps = 149/516 (28%)

Query: 26  HFNSAGSSASKRPSG-IDNSDLVNDATAEDPG-------AGPEIVD---TLLEGRDYILL 74
           H + A  SA++   G +DNSDLV      DP        AG   V     L  G D+ ++
Sbjct: 345 HADKADKSAAEGEIGPVDNSDLV---LVTDPAITGFHDEAGEPFVPLRPGLQMGEDFEIV 401

Query: 75  PQEVWNQLHSWYG---GGPTLAR---KVISSGLSQTELAVEVYPLRLQLLVMPRGECSTI 128
           PQE W+ +  WYG     P + R     +  G +Q  +  E++P    +L +      T 
Sbjct: 402 PQEGWDLIMRWYGLASQSPAIVRYAHNTVEEGDAQN-IQYELHPPIFTVLKLANPAAGTT 460

Query: 129 -------RISKKETIGELH-------RRACSIFYLNLE-QICIWDYYGH-----RKHALM 168
                   +S  + +   H       ++   +  +++  ++ +W   G         A+ 
Sbjct: 461 PQSLREKNMSPAKVLSSRHTNFQKWLKQVKGLANIDMSTKVRVWRILGGLGSATASAAIT 520

Query: 169 NDMDRTLDDA-----------NIQMDQDILV--------EVLDNVNGT------NCKSSI 203
               R+   A           N+ +D +  +        E++DNV         N +S++
Sbjct: 521 PAASRSASPAPTASLVANAGNNLVLDLNTFLSLSDGAQRELVDNVKDQTNNPNFNGRSTL 580

Query: 204 QDNGFA--------EKKASSVLVEPSKSSLSIAGGWSAS---------KGTSRNHSSEIS 246
              G +        E+       E SK +L   G  S S         K  S  +S   S
Sbjct: 581 DRVGLSTSDVVVLEERVGGEWASEASKKTLDRLGVPSGSVKNGAPAKLKNKSPTNSGRSS 640

Query: 247 TSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE 306
            +P     R  D           G   G TGL NLGNTC+MNSA+QC+    E   YF  
Sbjct: 641 PAPEPIRGRRKD-----------GKPRGCTGLSNLGNTCYMNSALQCVRSVEELTYYFLN 689

Query: 307 D-YRREINWQNPLG---------------------------------------------- 319
           D Y+R++N  NPL                                               
Sbjct: 690 DVYKRDLNPSNPLAHNGDIAKAYANLLRMLYDEAGQSSFAPRQFKHTIGRYGPAFSGYGQ 749

Query: 320 --MVELLAFLLDGLHEDLNRVKHKPYIKSKDA------DGRPDEEVADEYWANHIARNDS 371
               E L FLLDGL EDLNR++ KPYI+  D+      D    +E A++ W  + ARNDS
Sbjct: 750 QDSQEFLLFLLDGLQEDLNRIQKKPYIEKPDSTDDMVHDKEALKEFANKCWDIYKARNDS 809

Query: 372 IIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPL 407
           +I D+  G YKSTLVCPVC KVS+ FDPF  L+L L
Sbjct: 810 VITDLFAGMYKSTLVCPVCEKVSIIFDPFNNLTLQL 845


>gi|323354353|gb|EGA86192.1| Ubp12p [Saccharomyces cerevisiae VL3]
          Length = 1257

 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 72/153 (47%), Positives = 104/153 (67%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A+   ++L  CL+ F + E L   D WYCP CKE RQA+K++ LW  P++L+IHLKRF  
Sbjct: 957  AKERTITLDDCLQLFSKPEILGLTDSWYCPTCKEHRQATKQIQLWNTPDILLIHLKRFES 1016

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
             RS   K++  VNFPI D +L++YV  K+  R  +Y+LYA+ NHYGG+G GHYTA++K  
Sbjct: 1017 QRSFSDKIDATVNFPITDLDLSRYVVYKDDPRGLIYDLYAVDNHYGGLGGGHYTAYVKNF 1076

Query: 795  DENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             +N+WY FDDS ++    ++  + +AY+LFY R
Sbjct: 1077 ADNKWYYFDDSRVTETAPENSIAGSAYLLFYIR 1109



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 107/349 (30%), Positives = 149/349 (42%), Gaps = 82/349 (23%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPL---GMV-------- 321
           G TGL+NLGNTC+MNSA+QCLVH P+   YF  D Y  EIN +NPL   G V        
Sbjct: 362 GTTGLVNLGNTCYMNSALQCLVHIPQLRDYFLYDGYEDEINEENPLGYHGYVARAFSDLV 421

Query: 322 ------------------------------------------ELLAFLLDGLHEDLNRVK 339
                                                     E LAFLLD LHEDLNR+ 
Sbjct: 422 QKLFQNRMSIMQRNAAFPPSMFKSTIGHFNSMFSGYMQQDSQEFLAFLLDSLHEDLNRII 481

Query: 340 HKPYIKSKDADGRPD-------EEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNK 392
            K Y +        D       +++AD+ W  H+ RN S+I D+  G YKSTL CP C  
Sbjct: 482 KKEYTEKPSLSPGDDVNDWNVVKKLADDTWEMHLKRNCSVITDLFVGMYKSTLYCPECQN 541

Query: 393 VSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNIC 452
           VS+TFDP+  ++LPL   T    T+ +F  +    P    V + K     DL   +G + 
Sbjct: 542 VSITFDPYNDVTLPLPVDTVWDKTIKIFPMNSP--PLLLEVELSKSSTYMDLKNYVGKMS 599

Query: 453 SLKQ---------SEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAV 503
            L           S ++ V      S  +FL   L  L  IK  D +  Y +P      V
Sbjct: 600 GLDPNTLFGCEIFSNQIYVNYESTESNAQFL--TLQEL--IKPADDVIFYELPVTNDNEV 655

Query: 504 FLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQ 552
            + +++   E+    A        +G P   ++  D++ + G I+  +Q
Sbjct: 656 IVPVLNTRIEKGYKNAM------LFGVPFFITLKEDELNNPGAIRMKLQ 698


>gi|358387112|gb|EHK24707.1| hypothetical protein TRIVIDRAFT_112293, partial [Trichoderma virens
            Gv29-8]
          Length = 1572

 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 72/149 (48%), Positives = 104/149 (69%), Gaps = 1/149 (0%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            ++L  CL+ F R E L  +DMWYCP+CKE R+ASKK DLW+ P+ L+ HLKRFS S   +
Sbjct: 1225 ITLEECLDEFERAEVLSEQDMWYCPRCKEHRRASKKFDLWKSPDYLICHLKRFSSSGWRR 1284

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRW 799
             KL+  V+FPI   +L+  V  K   + ++Y+L A+ +HYGG+G GHYTA+ K   + RW
Sbjct: 1285 DKLDVLVDFPIEGLDLSSRVIQKEDGKEEIYDLIAVDDHYGGLGGGHYTAYAKNFVDGRW 1344

Query: 800  YNFDDSHISPINE-DDVKSAAAYVLFYRR 827
            YN++DS +S +++   V ++AAY+LFYRR
Sbjct: 1345 YNYNDSSVSAVSDPSSVVTSAAYLLFYRR 1373



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 87/247 (35%), Positives = 113/247 (45%), Gaps = 56/247 (22%)

Query: 256 DSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINW 314
           D   T G       G S+G  GL NLGNTC+MNSA+QCL    E ++YF    +  E+N 
Sbjct: 526 DGPATRGRMQKKRNGRSLGAVGLQNLGNTCYMNSALQCLRAIEELSKYFMTGTFSAELNK 585

Query: 315 QNPLGM-----------------------------------------------VELLAFL 327
            NPLG                                                 E L FL
Sbjct: 586 TNPLGYNGRVAMAYNGLLRDIYDEGRGSVVPRDFKSTVGRVRSTFAGWGQQDSQEFLGFL 645

Query: 328 LDGLHEDLNRVKHKPYIKSKDA------DGRPDEEVADEYWANHIARNDSIIVDVCQGQY 381
           LD L EDL+R+K+KPYI+  D+      +    +E+AD+ W     R+DS+I D+  G Y
Sbjct: 646 LDALQEDLSRIKNKPYIEKPDSTDDMINNPAAIKEMADKVWDITRQRDDSVIFDLFTGMY 705

Query: 382 KSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRC 441
           KSTL CPVC K+S+TFDPF  L+LPL        TVT F  +   +P  + V + KH   
Sbjct: 706 KSTLKCPVCGKISITFDPFNNLTLPLPVENMWAKTVTFFPLND--VPVKFEVELSKHSSI 763

Query: 442 RDLIQVL 448
             L   L
Sbjct: 764 ETLKSFL 770


>gi|291225440|ref|XP_002732713.1| PREDICTED: ubiquitin specific protease 8-like [Saccoglossus
            kowalevskii]
          Length = 1150

 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 66/145 (45%), Positives = 100/145 (68%), Gaps = 2/145 (1%)

Query: 681  SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKH 740
            SLY C++ F + E +   D W+CP+CK  R+A+K++++W+LP +L+IHLKRFSY    +H
Sbjct: 995  SLYDCVKNFTKLEKVGGADKWFCPKCKVHREANKRIEIWKLPHILLIHLKRFSYEGVWRH 1054

Query: 741  KLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWY 800
            KL+T V+FPI++ +++ +V      +R  Y LYA++NHYG M  GHYTA  K     +WY
Sbjct: 1055 KLQTDVDFPINNLDMSSHVI--GPKKRSSYNLYAVSNHYGTMDGGHYTAFCKNAIRQKWY 1112

Query: 801  NFDDSHISPINEDDVKSAAAYVLFY 825
             FDD+ +  +   +VKS+AAY+LFY
Sbjct: 1113 KFDDTEVYEMPTRNVKSSAAYILFY 1137



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/244 (36%), Positives = 116/244 (47%), Gaps = 72/244 (29%)

Query: 212 KASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGA 271
           ++S  L+ PS+ ++ I              +S++S     A  R+ +   G+ G      
Sbjct: 769 RSSKPLIRPSRPNVEI-------------RTSDVSA----AQVRNLNPVFGNQGR----- 806

Query: 272 SVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLGM---------- 320
              LTGL NLGNTCFMNS IQ L ++   A YF E  Y+  IN +N LG           
Sbjct: 807 --ALTGLKNLGNTCFMNSIIQSLANSTPLATYFIEGSYKYHINRENKLGRGGKVAEEFAV 864

Query: 321 -------------------------------------VELLAFLLDGLHEDLNRVKHKPY 343
                                                 E L FLLDGLHEDLNRVKH+ Y
Sbjct: 865 VINAIWSGHYRSISPRDFKLTVSKFVPQFAGYEQQDSQEFLLFLLDGLHEDLNRVKHRKY 924

Query: 344 IKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYL 403
           I+ KD     D++ A   W NH   N+SI+V++ QGQ+KSTL C  C K SVT+D FMYL
Sbjct: 925 IEEKDNTHLTDDQAAQLAWNNHKRLNESIMVELFQGQFKSTLQCLFCQKKSVTYDAFMYL 984

Query: 404 SLPL 407
           SLPL
Sbjct: 985 SLPL 988


>gi|118362868|ref|XP_001014765.1| Ubiquitin carboxyl-terminal hydrolase family protein [Tetrahymena
           thermophila]
 gi|89296426|gb|EAR94414.1| Ubiquitin carboxyl-terminal hydrolase family protein [Tetrahymena
           thermophila SB210]
          Length = 1271

 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 84/209 (40%), Positives = 114/209 (54%), Gaps = 50/209 (23%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV----------- 321
           GL GL NLGNTCFMNSA+QC+ +T     YF ++ Y +EIN QN LG             
Sbjct: 573 GLCGLQNLGNTCFMNSALQCMSNTIPLTIYFLKKIYLQEINEQNVLGTQGKLAKQYAKFI 632

Query: 322 ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E L+++LDGLHEDLNRVK K Y +
Sbjct: 633 KNLWTGNQRTFSPIALKMAVARLQSMFSGYQQHDSQEFLSYILDGLHEDLNRVKVKKYTE 692

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           S D++GRPD+ VA E W NH+ RN SIIVD+ QGQ+KS + CP C+K S+TFDPF+  SL
Sbjct: 693 SIDSNGRPDQVVAKESWLNHLKRNQSIIVDLMQGQFKSKVTCPDCSKESITFDPFLTCSL 752

Query: 406 PLQATTTRTMTVTVFTSDG--SALPSTYT 432
           P+     + +++ +  ++   +A+   YT
Sbjct: 753 PIPNKEIKVISMYLIFANNRKTAIEVKYT 781



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 57/85 (67%), Gaps = 1/85 (1%)

Query: 681  SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM-K 739
            ++Y CL+ F + E L  ++ WYCP+CK+ ++A K++ ++R P++L++HLKRF  S  + K
Sbjct: 1042 NIYDCLKLFEQPERLGEDNEWYCPECKKHQKAQKQIVIYRAPDILILHLKRFKGSSGLFK 1101

Query: 740  HKLETFVNFPIHDFNLTKYVANKNS 764
             KL   V+FPI   ++T +V  K +
Sbjct: 1102 SKLTKVVDFPIQGLDMTDFVIEKET 1126



 Score = 76.3 bits (186), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 34/67 (50%), Positives = 48/67 (71%), Gaps = 3/67 (4%)

Query: 761  NKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAA 820
            NKN  +R  Y+LYA+TNHYG +G GHYTA+ +  + NRW+ FDDS +  +  D + S A+
Sbjct: 1206 NKND-KRLFYDLYAITNHYGSLGFGHYTAYAQ--NNNRWFCFDDSCVRDVTPDQLVSEAS 1262

Query: 821  YVLFYRR 827
            Y+LFY+R
Sbjct: 1263 YILFYKR 1269


>gi|194751941|ref|XP_001958282.1| GF23599 [Drosophila ananassae]
 gi|190625564|gb|EDV41088.1| GF23599 [Drosophila ananassae]
          Length = 1748

 Score =  152 bits (385), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 104/273 (38%), Positives = 137/273 (50%), Gaps = 54/273 (19%)

Query: 274  GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGM------------ 320
            G TGL NLGNTCFMN+A+Q L +T   A+YF RE +R E+N  N LG             
Sbjct: 738  GATGLHNLGNTCFMNAALQVLFNTQPLAQYFQREMHRFELNATNKLGTRGQLAMRYAELL 797

Query: 321  -----------------------------------VELLAFLLDGLHEDLNRVKHKPYIK 345
                                                ELL +LLD LHEDLNRV  KPY +
Sbjct: 798  KEVWTATTRSVAPLKLRFCVNKHAPQFAGGGQHDSQELLEWLLDALHEDLNRVTEKPYSE 857

Query: 346  SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
             KD++GRPD+ VA E W+ H ARN SII+D+  GQ KS + C  C   SV FDPF  LSL
Sbjct: 858  LKDSNGRPDKIVAAEAWSQHHARNQSIIIDLFYGQLKSKVSCLGCGHESVRFDPFSLLSL 917

Query: 406  PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
            PL       + V V   DGS +P  Y + +    +  DL   L  +C+L+ S  L + E+
Sbjct: 918  PLPVENYVYLEVLVILLDGS-VPIKYGLRLNSECKYADLKNKLATLCNLQPSLML-ICEL 975

Query: 466  QNHSIQRFL-DDPLISLSTIKDDDHLAAYRVPK 497
             N  I++ L D+  +   + KD   L  Y++P+
Sbjct: 976  WNSQIRQVLADEEKLRPQSAKD---LYIYQLPE 1005



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 89/174 (51%), Gaps = 9/174 (5%)

Query: 588  NSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWS 647
            N++S+       ++K  +LPNL ++   E    +  S+    T +     T   + +DW 
Sbjct: 1376 NAASSNTTTPKMNAKFPSLPNLEVKRTPE----YTASLSYTPTTKYFEDFT---IAIDWD 1428

Query: 648  QKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCK 707
               L       LE L    +   ++++ + EP+ L  CL AF  EE L  E  ++C  CK
Sbjct: 1429 PTALHLRYQSTLERLWVDHETIAISRREQVEPVDLNHCLRAFTSEEKL--EQWYHCSHCK 1486

Query: 708  ERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVAN 761
             ++ A+KKL +W+LP +L++HLKRF+       K +  V+FP  DF+ T Y+A+
Sbjct: 1487 GKKPATKKLQIWKLPPILIVHLKRFNCVNGKWVKSQKVVHFPFDDFDPTPYLAS 1540



 Score = 49.7 bits (117), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 8/89 (8%)

Query: 37  RPSGIDNSDLV------NDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGP 90
           RP  IDNS+L+      N  T    G   +    L +  D+ L+P+ +W  L+ WYG   
Sbjct: 489 RPGPIDNSNLITANPYRNVRTLTGEGGHLKRDTPLAQNHDFELIPKSLWKALNRWYGDNL 548

Query: 91  TLARKVISSGLSQTELAVEVYPLRLQLLV 119
            L R+VI    S  +L  E+YPL L++L+
Sbjct: 549 PLPRQVIQPPNSDVDL--ELYPLNLRILL 575



 Score = 42.4 bits (98), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 770  YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDD-VKSAAAYVLFYRR 827
            Y LYA+ +H G +  GHY ++        WY ++DS    I++   +  +AAY+LFY R
Sbjct: 1650 YRLYAVVSHSGMLNGGHYISYASNAS-GSWYCYNDSSCREISQKPMIDPSAAYLLFYER 1707


>gi|365764875|gb|EHN06393.1| Ubp12p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
          Length = 1254

 Score =  152 bits (385), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 72/153 (47%), Positives = 104/153 (67%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A+   ++L  CL+ F + E L   D WYCP CKE RQA+K++ LW  P++L+IHLKRF  
Sbjct: 957  AKERTITLDDCLQLFSKPEILGLTDSWYCPTCKEHRQATKQIQLWNTPDILLIHLKRFES 1016

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
             RS   K++  VNFPI D +L++YV  K+  R  +Y+LYA+ NHYGG+G GHYTA++K  
Sbjct: 1017 QRSFSDKIDATVNFPITDLDLSRYVVYKDDPRGLIYDLYAVDNHYGGLGGGHYTAYVKNF 1076

Query: 795  DENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             +N+WY FDDS ++    ++  + +AY+LFY R
Sbjct: 1077 ADNKWYYFDDSRVTETVPENSIAGSAYLLFYIR 1109



 Score =  135 bits (340), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 107/349 (30%), Positives = 149/349 (42%), Gaps = 82/349 (23%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPL---GMV-------- 321
           G TGL+NLGNTC+MNSA+QCLVH P+   YF  D Y  EIN +NPL   G V        
Sbjct: 362 GTTGLVNLGNTCYMNSALQCLVHIPQLRDYFLYDGYEDEINEENPLGYHGYVARAFSDLV 421

Query: 322 ------------------------------------------ELLAFLLDGLHEDLNRVK 339
                                                     E LAFLLD LHEDLNR+ 
Sbjct: 422 QKLFQNRMSIMQRNAAFPPSMFKSTIGHFNSMFSGYMQQDSQEFLAFLLDSLHEDLNRII 481

Query: 340 HKPYIKSKDADGRPD-------EEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNK 392
            K Y +        D       +++AD+ W  H+ RN S+I D+  G YKSTL CP C  
Sbjct: 482 KKEYTEKPSLSPGDDVNDWNVVKKLADDTWEMHLKRNCSVITDLFVGMYKSTLYCPECQN 541

Query: 393 VSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNIC 452
           VS+TFDP+  ++LPL   T    T+ +F  +    P    V + K     DL   +G + 
Sbjct: 542 VSITFDPYNDVTLPLPVDTVWDKTIKIFPMNSP--PLLLEVELSKSSTYMDLKNYVGKMS 599

Query: 453 SLKQ---------SEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAV 503
            L           S ++ V      S  +FL   L  L  IK  D +  Y +P      V
Sbjct: 600 GLDPNTLFGCEIFSNQIYVNYESTESNAQFL--TLQEL--IKPADDVIFYELPVTNDNEV 655

Query: 504 FLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQ 552
            + +++   E+    A        +G P   ++  D++ + G I+  +Q
Sbjct: 656 IVPVLNTRIEKGYKNAM------LFGVPFFITLKEDELNNPGAIRMKLQ 698


>gi|50304791|ref|XP_452351.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641484|emb|CAH01202.1| KLLA0C03476p [Kluyveromyces lactis]
          Length = 1252

 Score =  152 bits (384), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 115/352 (32%), Positives = 156/352 (44%), Gaps = 73/352 (20%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------- 321
            A  G+ GL NLGNTC+MNSA+QCL+H PE   YF  + Y REIN  NPLG         
Sbjct: 333 NAPSGIMGLSNLGNTCYMNSALQCLLHIPELNEYFLYKGYEREININNPLGHKGDVAHAF 392

Query: 322 -------------------------------------------ELLAFLLDGLHEDLNRV 338
                                                      E LAFLLDGLHEDLNRV
Sbjct: 393 GHLLYSLFAPSYGQSTFYAPRNFKNTIGHYNSLFAGYGQQDSQEFLAFLLDGLHEDLNRV 452

Query: 339 KHKPYIKSKD--ADGRPDEE-----VADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCN 391
             KPY+   +   DG+ D+      +A   W     RNDS+I+D+  G YKSTLVCP CN
Sbjct: 453 IEKPYVNKPEFPNDGQIDDTDQIVLLAANMWDYIKKRNDSVIMDLFVGLYKSTLVCPNCN 512

Query: 392 KVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNI 451
            VS+TFDP+  L+LPL      +  VT+F  +    P T  V + K     DL   +   
Sbjct: 513 HVSITFDPYNDLTLPLPIENYWSTKVTIFPQNSP--PCTLEVELSKTSSYNDLKAYVAQH 570

Query: 452 CSLKQSEELKVAEIQNHSIQRFLD-----DPLISLSTIKDDDHLAAYRVPKLVKKAVFLQ 506
            ++  + +L  AEI NH      +     D L     I + D +  Y V +     V   
Sbjct: 571 ANM-HANDLIGAEIFNHQFYNNYESNVEADYLPISELISESDTVIFYEVHRGQDDLVVPI 629

Query: 507 LIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPF 558
           L  R +E      +T    + +G P   ++S+ +  S G I+  +++    F
Sbjct: 630 LNTRFEE----GFKTP---RLFGYPFFIALSQAEQFSYGAIRKKIEKCYQNF 674



 Score =  140 bits (352), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 72/172 (41%), Positives = 109/172 (63%), Gaps = 5/172 (2%)

Query: 658  FLENLL--EVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKK 715
             LENL   EV K    T+K+    ++L +CL  F + E L   D WYCP CK+  QASK+
Sbjct: 881  ILENLSLSEVRKTRAQTEKSS---ITLDSCLRLFSQPEILGSADSWYCPNCKQHTQASKQ 937

Query: 716  LDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYAL 775
            ++LW  P++L+IHLKRF   RS   K++  V FPI   +++ Y++ K      +Y+L A+
Sbjct: 938  IELWNTPDILLIHLKRFENQRSFSDKIDATVKFPIEGLDMSPYLSYKKEGENDVYDLIAV 997

Query: 776  TNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             NHYGG+G GHYTA+ +   + +WY FDDS ++ ++ ++  + +AY+LFYRR
Sbjct: 998  DNHYGGLGGGHYTAYCRNFIDGKWYYFDDSRVNEVSPENSIAGSAYLLFYRR 1049


>gi|432851662|ref|XP_004067022.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like [Oryzias
            latipes]
          Length = 1074

 Score =  152 bits (384), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 69/151 (45%), Positives = 99/151 (65%), Gaps = 1/151 (0%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A T   SL  CL  F +EE L   +  +C  CK  R ++KKL++W++P +L++HLKRFSY
Sbjct: 922  ASTSKCSLQDCLRLFSKEEKLTDNNKVFCRHCKAHRDSTKKLEIWKVPPILLVHLKRFSY 981

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
                K KL+T V+FP+ + +LT+YV     + ++ Y LY ++NHYGG+  GHYTA+ K  
Sbjct: 982  EGRWKQKLQTTVDFPLDNLDLTQYVIGPKQTLKRYY-LYGVSNHYGGLDGGHYTAYCKNA 1040

Query: 795  DENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
             + RWY FDD  +S I+   VKS+AAY+LFY
Sbjct: 1041 TKQRWYKFDDHEVSEISTSSVKSSAAYILFY 1071



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/206 (38%), Positives = 101/206 (49%), Gaps = 48/206 (23%)

Query: 254 ARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDYRRE-I 312
           AR S   + S   T  G    LTGL NLGNTC+MNS +QCL +TP  A YF  +Y  E I
Sbjct: 720 ARPSAAKIRSLNPTFGGMGASLTGLRNLGNTCYMNSILQCLCNTPAMAEYFNSNYYLEDI 779

Query: 313 NWQNPLGMV-----------------------------------------------ELLA 325
           N  N LG                                                 ELL 
Sbjct: 780 NRSNILGHKGEFAEEFGVIMKALWAGLYKCISPRDFKITIGKINDQFAGYDQQDSQELLL 839

Query: 326 FLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTL 385
           FL+DGLHEDLN+  +K   K ++ D   D+  AD  W+ H   N+SIIV + QGQ+KST+
Sbjct: 840 FLMDGLHEDLNKADNKKRYKEEENDHLDDQTAADLAWSKHKLLNESIIVALFQGQFKSTV 899

Query: 386 VCPVCNKVSVTFDPFMYLSLPLQATT 411
            C  C++ S TF+ FMYLSLPL +T+
Sbjct: 900 QCSTCHRKSRTFETFMYLSLPLASTS 925


>gi|121716260|ref|XP_001275739.1| ubiquitin carboxyl-terminal hydrolase, putative [Aspergillus clavatus
            NRRL 1]
 gi|119403896|gb|EAW14313.1| ubiquitin carboxyl-terminal hydrolase, putative [Aspergillus clavatus
            NRRL 1]
          Length = 1480

 Score =  152 bits (384), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 73/157 (46%), Positives = 105/157 (66%), Gaps = 3/157 (1%)

Query: 672  TKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKR 731
            T+K R   ++LY CL+ F +EE L   D WYCP+CKE R+ASKK +LW+ P++LV+HLKR
Sbjct: 1086 TRKKRG--VTLYECLDEFNKEEILSENDAWYCPRCKEHRRASKKFELWKTPDILVMHLKR 1143

Query: 732  FSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHI 791
            FS SR  + KL+  V+FP+   +++  V      +  +Y+L+A+ NHYGG+G GHYTA+ 
Sbjct: 1144 FSASRGFRDKLDVLVDFPVEGLDMSGRVEAPEEGKSLIYDLFAVDNHYGGLGGGHYTAYA 1203

Query: 792  KLLDENRWYNFDDSHIS-PINEDDVKSAAAYVLFYRR 827
            K      W  ++DS +S PI+   V + AAY+LFYRR
Sbjct: 1204 KNFMSGEWNEYNDSSVSRPIDPQSVVTPAAYLLFYRR 1240



 Score =  126 bits (316), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 94/302 (31%), Positives = 132/302 (43%), Gaps = 65/302 (21%)

Query: 253 SARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRRE 311
           S R S     + G    G   G TGL NLGNTC+MNSA+QC+    E   YF  D Y+++
Sbjct: 443 SGRSSPIPEPARGRRKDGKPRGCTGLSNLGNTCYMNSALQCVRSVEELTYYFLNDVYKKD 502

Query: 312 INWQNPLG--------------MV----------------------------------EL 323
           +N  NPL               M+                                  E 
Sbjct: 503 LNPSNPLAHNGDVAKAYANLLRMIYDEAGQSSFAPRQLKHTIGRYGPAFSGYGQQDSQEF 562

Query: 324 LAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEV---------ADEYWANHIARNDSIIV 374
           L FLLDGL EDLNR++ KPYI+  D+    DE V         A + W  + ARNDS+I 
Sbjct: 563 LLFLLDGLQEDLNRIQKKPYIEKPDST---DEMVHNKDALRDFATKCWEIYKARNDSVIT 619

Query: 375 DVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVT 434
           D+  G YKSTL+CP C KVS+ FDPF  L+L L      +  +  F       P    V 
Sbjct: 620 DLFAGMYKSTLICPTCEKVSIIFDPFNNLTLQLPIENLWSKEIFYFPR--HRKPVIIDVE 677

Query: 435 VPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPL-ISLSTIKDDDHLAAY 493
           + K+   + L +++         + L +AEI      +  D+   I+  +I + D +A +
Sbjct: 678 IDKNSSIKALKELVAKKMG-SDPQRLVMAEIYKFKFYKMFDNNTSIAEYSIGEGDDIAIF 736

Query: 494 RV 495
            +
Sbjct: 737 EL 738


>gi|400599105|gb|EJP66809.1| ubiquitin carboxyl-terminal hydrolase [Beauveria bassiana ARSEF 2860]
          Length = 1565

 Score =  152 bits (384), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 73/153 (47%), Positives = 105/153 (68%), Gaps = 1/153 (0%)

Query: 676  RTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYS 735
            +++ ++L  CL+ F R E L   DMWYCP+CKE R+ASKK DLW+ P  LV HLKRFS S
Sbjct: 1260 KSKGITLDECLDEFERAEILSEHDMWYCPRCKEHRRASKKFDLWKTPNYLVTHLKRFSSS 1319

Query: 736  RSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLD 795
               + KL+  V+FPI + +LT  V  K   + ++Y+L A+ NHYGG+G GHYTA+ K   
Sbjct: 1320 GWRRDKLDVLVDFPIEELDLTARVVEKEDGKSEVYDLIAVDNHYGGLGGGHYTAYAKNFV 1379

Query: 796  ENRWYNFDDSHISPI-NEDDVKSAAAYVLFYRR 827
            + +WYN++DS +S + N   + ++AAY+LFY+R
Sbjct: 1380 DGKWYNYNDSSVSVVSNTQSIITSAAYLLFYKR 1412



 Score =  135 bits (340), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 95/259 (36%), Positives = 119/259 (45%), Gaps = 70/259 (27%)

Query: 243 SEISTSPNLASARDSDNTLGSSGVTTRGA---------SVGLTGLLNLGNTCFMNSAIQC 293
           S +S+ PN  SAR S    G  G+ TRG          SVG+ GL NLGNTC+MNSA+QC
Sbjct: 565 SALSSKPN--SARSSP---GPEGIMTRGRAGRKKKLGRSVGVVGLQNLGNTCYMNSALQC 619

Query: 294 LVHTPEFARYFRED-YRREINWQNPLGM-------------------------------- 320
                E  ++F  D Y  EIN  N LG                                 
Sbjct: 620 FRSVEELTKFFITDAYLDEINKTNLLGYNGKMAMAYGGLLHDIYREGRGSVSPRDFKSTV 679

Query: 321 ---------------VELLAFLLDGLHEDLNRVKHKPYIKSKDA------DGRPDEEVAD 359
                           E L FLLD L EDL+RV +KPYI+  D+      D     E+A 
Sbjct: 680 GRCRSTFSGWGQQDSQEFLGFLLDALQEDLSRVGNKPYIEKPDSTDEMINDPEAIRELAA 739

Query: 360 EYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTV 419
           + W     R+DS+I D+  G YKSTL CP C+K+S+TFDPF  L LPL   T  + TV  
Sbjct: 740 KVWDITRQRDDSVIADLFTGMYKSTLKCPECDKISITFDPFNTLPLPLPLETVWSTTVKF 799

Query: 420 FTSDGSALPSTYTVTVPKH 438
           F  +   +P    V +PKH
Sbjct: 800 FPLND--VPVNIDVELPKH 816


>gi|47211965|emb|CAF96184.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 365

 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 82/174 (47%), Positives = 118/174 (67%), Gaps = 6/174 (3%)

Query: 644 VDWSQKLLEKYNTHFLENLLEVF-KNGPVTKKARTEPL-SLYTCLEAFLREEPLVPEDMW 701
           +DW     +KY   F E ++E F K+  +  K + +    L  C+E F  +E L  ED W
Sbjct: 98  LDWEPDTKKKY---FDETVVEDFDKHESMEYKPQKKAFFKLKDCIELFTTKEKLGAEDPW 154

Query: 702 YCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVAN 761
           YCP CK+ +QA+KKLDLW LP VLV+HLKRFSYSR M+ KL++ V+FP+ D ++++++ N
Sbjct: 155 YCPNCKQHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDSLVDFPLRDLDMSEFLIN 214

Query: 762 KNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDV 815
            N+   + Y+L A++NHYGGMG GHYTA+ K  D+ +WY FDDS +SP +ED +
Sbjct: 215 PNAGPCR-YDLIAVSNHYGGMGGGHYTAYAKNKDDGKWYYFDDSSVSPASEDQI 267


>gi|410912832|ref|XP_003969893.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like [Takifugu
            rubripes]
          Length = 1082

 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 70/151 (46%), Positives = 98/151 (64%), Gaps = 1/151 (0%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A T   SL  CL  F +EE L   +  +C  CK  R ++KKL++W++P +L++HLKRFSY
Sbjct: 930  ASTSKCSLQDCLRLFSKEEKLTDNNKVFCRHCKAHRDSTKKLEIWKVPPILLVHLKRFSY 989

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
                K KL+T V+FP+   +L +YV     S ++ Y LYA++NHYGG+  GHYTA+ K  
Sbjct: 990  EGRWKQKLQTSVDFPLDSLDLAQYVIGPKQSLKR-YSLYAVSNHYGGLDGGHYTAYCKSA 1048

Query: 795  DENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
             + RWY FDD  +S I+   VKS+AAY+LFY
Sbjct: 1049 LKQRWYKFDDHEVSDISTSSVKSSAAYILFY 1079



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/206 (36%), Positives = 98/206 (47%), Gaps = 48/206 (23%)

Query: 254 ARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDYRRE-I 312
           AR S   + S   +  G    LTGL NLGNTC+MNS +QCL + P    YF  +Y  + I
Sbjct: 728 ARPSAAKIRSLNPSFGGLGASLTGLRNLGNTCYMNSVLQCLCNAPALTEYFNNNYYMDDI 787

Query: 313 NWQNPLGMV-----------------------------------------------ELLA 325
           N  N LG                                                 ELL 
Sbjct: 788 NRSNILGHKGDVAEEFGVIMKALWSGLYKCISPRDFKITIGKINEQFSGYEQQDSQELLL 847

Query: 326 FLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTL 385
           FL+DGLHEDLN+  ++   K ++ D   D+  AD  W  H   N+SIIV + QGQ+KST+
Sbjct: 848 FLMDGLHEDLNKADNRKRYKEEENDHLDDQTAADVAWRKHKLLNESIIVALFQGQFKSTV 907

Query: 386 VCPVCNKVSVTFDPFMYLSLPLQATT 411
            C  C++ S TF+ FMYLSLPL +T+
Sbjct: 908 QCLTCHRKSRTFETFMYLSLPLASTS 933


>gi|432092399|gb|ELK25014.1| Ubiquitin carboxyl-terminal hydrolase 19 [Myotis davidii]
          Length = 1229

 Score =  152 bits (383), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 86/196 (43%), Positives = 119/196 (60%), Gaps = 9/196 (4%)

Query: 322 ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQY 381
           E +AFLLDGLHEDLNR+++KPY ++ D+DGRPDE VA+E W  H  RNDS IVD+ QGQY
Sbjct: 554 EFMAFLLDGLHEDLNRIQNKPYTETVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQY 613

Query: 382 KSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPK-HGR 440
           KS LVCPVC KVS+TFDPF+YL +PL     + + V  F  +  + P  + V+V K +  
Sbjct: 614 KSKLVCPVCAKVSITFDPFLYLPVPL-PQKQKVLPVFFFAREPHSKPIKFLVSVSKENSS 672

Query: 441 CRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTIKDDDHLAAYRV--PK 497
             +++  L     +   E L++ E+      R FL  P  SL T+   D L  + +  P+
Sbjct: 673 ASEVLDALSQRVHVP-PENLRLTEVMKSRFHRMFL--PSHSLDTVSPSDLLLCFELLSPE 729

Query: 498 LVK-KAVFLQLIHRLQ 512
           L K + V L++  R Q
Sbjct: 730 LAKEQVVVLEVQQRPQ 745



 Score =  115 bits (289), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 58/138 (42%), Positives = 84/138 (60%), Gaps = 14/138 (10%)

Query: 700  MWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM--KHKLETFVNFPIHDFNLTK 757
            + YCPQCK+ R+ASK+L LWRLP VL++ LKRFS+ RS   + K+   V FP+ + +L+K
Sbjct: 1028 LKYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSF-RSFIWRDKINDLVEFPVRNLDLSK 1086

Query: 758  YVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR--------WYNFDDSHISP 809
            +   +   +   Y+LYA+ NHYGGM    ++     L  +R        W  FDDS ++ 
Sbjct: 1087 FCIGQKEEQLPSYDLYAVINHYGGM---IFSTACARLPNDRSSQRSDVGWRLFDDSTVTT 1143

Query: 810  INEDDVKSAAAYVLFYRR 827
            ++E  V +  AYVLFYRR
Sbjct: 1144 VDESQVVTRYAYVLFYRR 1161


>gi|195078736|ref|XP_001997241.1| GH17697 [Drosophila grimshawi]
 gi|193906143|gb|EDW05010.1| GH17697 [Drosophila grimshawi]
          Length = 1065

 Score =  152 bits (383), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 99/251 (39%), Positives = 125/251 (49%), Gaps = 50/251 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGM------------ 320
           G TGL NLGNTCFMN+A+Q L +T   A+YF R+ +R E+N  N LG             
Sbjct: 35  GATGLHNLGNTCFMNAALQVLFNTQPLAQYFHRQMHRFELNAANKLGTRGQLAMRYSELL 94

Query: 321 -----------------------------------VELLAFLLDGLHEDLNRVKHKPYIK 345
                                               ELL +LLD LHEDLNRV  KPY +
Sbjct: 95  KEVWTATTRSVAPLKLRFCVNKHAPQFSGGGQHDSQELLEWLLDALHEDLNRVMEKPYSE 154

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
            KD++GRPD+ VA E W+ H ARN SII+D+  GQ KS + C  C   SV FDPF  LSL
Sbjct: 155 LKDSNGRPDKIVAAEAWSQHHARNQSIIIDLFYGQLKSKVSCLSCGHESVRFDPFSLLSL 214

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
           PL       + V V   DGS +P  Y + +    +  DL   L  +C L+ S  L V E+
Sbjct: 215 PLPVENYVYLEVLVILLDGS-VPIKYGLRLNSECKYADLKHKLATLCPLQPSLML-VCEL 272

Query: 466 QNHSIQRFLDD 476
            N  I++ L D
Sbjct: 273 WNSQIRQVLAD 283



 Score = 84.3 bits (207), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 66/122 (54%), Gaps = 2/122 (1%)

Query: 640 IVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPED 699
             + +DW    L       LE L    +   + ++ + EP+ L  CL AF  EE L  E 
Sbjct: 732 FTIAIDWDPTALHLRYQSTLERLWVDHETIAICRREQVEPVDLNHCLRAFTSEEKL--EQ 789

Query: 700 MWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYV 759
            ++C  CK ++ A+KKL +W+LP +L++HLKRF+       K +  V+FP  DF+ T Y+
Sbjct: 790 WYHCSHCKGKKPATKKLQIWKLPPILIVHLKRFNCVNGKWVKSQKVVHFPFDDFDPTPYL 849

Query: 760 AN 761
           A+
Sbjct: 850 AS 851



 Score = 43.9 bits (102), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 770  YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINED-DVKSAAAYVLFYRR 827
            Y+LYA+ +H G +  GHY ++        WY ++DS    I++  ++  +AAY+LFY R
Sbjct: 968  YKLYAVVSHSGMLNGGHYISYAANTT-GSWYCYNDSSCREISQKPNIDPSAAYLLFYER 1025


>gi|195020247|ref|XP_001985155.1| GH14664 [Drosophila grimshawi]
 gi|193898637|gb|EDV97503.1| GH14664 [Drosophila grimshawi]
          Length = 1764

 Score =  152 bits (383), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/251 (39%), Positives = 125/251 (49%), Gaps = 50/251 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGM------------ 320
           G TGL NLGNTCFMN+A+Q L +T   A+YF R+ +R E+N  N LG             
Sbjct: 735 GATGLHNLGNTCFMNAALQVLFNTQPLAQYFHRQMHRFELNAANKLGTRGQLAMRYSELL 794

Query: 321 -----------------------------------VELLAFLLDGLHEDLNRVKHKPYIK 345
                                               ELL +LLD LHEDLNRV  KPY +
Sbjct: 795 KEVWTATTRSVAPLKLRFCVNKHAPQFSGGGQHDSQELLEWLLDALHEDLNRVMEKPYSE 854

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
            KD++GRPD+ VA E W+ H ARN SII+D+  GQ KS + C  C   SV FDPF  LSL
Sbjct: 855 LKDSNGRPDKIVAAEAWSQHHARNQSIIIDLFYGQLKSKVSCLSCGHESVRFDPFSLLSL 914

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
           PL       + V V   DGS +P  Y + +    +  DL   L  +C L+ S  L V E+
Sbjct: 915 PLPVENYVYLEVLVILLDGS-VPIKYGLRLNSECKYADLKHKLATLCPLQPSLML-VCEL 972

Query: 466 QNHSIQRFLDD 476
            N  I++ L D
Sbjct: 973 WNSQIRQVLAD 983



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 66/122 (54%), Gaps = 2/122 (1%)

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPED 699
              + +DW    L       LE L    +   + ++ + EP+ L  CL AF  EE L  E 
Sbjct: 1431 FTIAIDWDPTALHLRYQSTLERLWVDHETIAICRREQVEPVDLNHCLRAFTSEEKL--EQ 1488

Query: 700  MWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYV 759
             ++C  CK ++ A+KKL +W+LP +L++HLKRF+       K +  V+FP  DF+ T Y+
Sbjct: 1489 WYHCSHCKGKKPATKKLQIWKLPPILIVHLKRFNCVNGKWVKSQKVVHFPFDDFDPTPYL 1548

Query: 760  AN 761
            A+
Sbjct: 1549 AS 1550



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 8/92 (8%)

Query: 34  ASKRPSGIDNSDLV------NDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYG 87
             +RPS IDNS+L+      N  T    G   +    L++  D+ L+P+ +W  L+ WYG
Sbjct: 477 GQQRPSPIDNSNLITPNPYRNVRTLTGEGGHLKRDTPLVQNHDFELVPKSLWKALNRWYG 536

Query: 88  GGPTLARKVISSGLSQTELAVEVYPLRLQLLV 119
               L R+VI    S+ EL  E+YPL L++L+
Sbjct: 537 DNLPLPRQVIQPPNSEVEL--ELYPLNLRILL 566



 Score = 43.9 bits (102), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 770  YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINED-DVKSAAAYVLFYRR 827
            Y+LYA+ +H G +  GHY ++        WY ++DS    I++  ++  +AAY+LFY R
Sbjct: 1667 YKLYAVVSHSGMLNGGHYISYAA-NTTGSWYCYNDSSCREISQKPNIDPSAAYLLFYER 1724


>gi|19075499|ref|NP_587999.1| ubiquitin C-terminal hydrolase Ubp1 [Schizosaccharomyces pombe
           972h-]
 gi|24638334|sp|Q9USM5.1|UBP1_SCHPO RecName: Full=Probable ubiquitin carboxyl-terminal hydrolase 1;
           AltName: Full=Deubiquitinating enzyme 1; AltName:
           Full=Ubiquitin thioesterase 1; AltName:
           Full=Ubiquitin-specific-processing protease 1
 gi|5748692|emb|CAB53084.1| ubiquitin C-terminal hydrolase Ubp1 [Schizosaccharomyces pombe]
          Length = 849

 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 103/345 (29%), Positives = 155/345 (44%), Gaps = 71/345 (20%)

Query: 268 TRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV----- 321
           T    +GL GL NLGN+C+MNSA+QC++HT E  +YF  D Y ++IN+ NPLGM+     
Sbjct: 271 TINKEIGLCGLYNLGNSCYMNSALQCMIHTHELTKYFLSDSYEKDINYNNPLGMMGKVAL 330

Query: 322 -------------------------------------------ELLAFLLDGLHEDLNRV 338
                                                      E +AF LDGLHEDLNR+
Sbjct: 331 SYASLLKMIHHTADMHSVSPSSFKFIIGEFNTYFSGYRQQDSQEFIAFFLDGLHEDLNRI 390

Query: 339 KHKPYIKSKDA-DGRP--DEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSV 395
           + KPY +  D  D  P   + VA++ W  H  RNDSIIV + QG YKSTL C +C + S 
Sbjct: 391 QIKPYFERPDLFDEHPLHVQRVANQCWDIHTKRNDSIIVQLFQGMYKSTLECSICYQKST 450

Query: 396 TFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTY-------TVTVPKHGRCRDLIQVL 448
            FDPFMYL+LPL  +      V      G+  P          +  +    +  + +Q +
Sbjct: 451 AFDPFMYLTLPLPTSAKWRHKVVYVPPFGTQSPVELYLELLMESTVIQMKFQATEKLQKM 510

Query: 449 GNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLI 508
           G  C      EL   +I    + + L +       I   DH+  Y         + + ++
Sbjct: 511 GLECG-----ELTACDIYRGKVYKVLKNKDKISKKIHKWDHVVLYGS---TANGLTIPIV 562

Query: 509 HRLQEQE-PGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQ 552
           H  +    PG+ Q+      +G PL  ++   +V+++  ++  V+
Sbjct: 563 HGCKRPAMPGSYQSND---VFGFPLQLNVRSRNVLTNDLVKEIVE 604



 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 98/159 (61%), Gaps = 10/159 (6%)

Query: 678 EPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFS---Y 734
           E ++L  CL  F + E L  +D WYCP CK  R A+K+L++WRLP++LVIHL RFS    
Sbjct: 688 ESITLEDCLLEFSKPEQLDLQDSWYCPGCKAFRPATKRLEIWRLPKILVIHLNRFSGHGG 747

Query: 735 SRSMKHKLETFVNFPIHDFNLTKYVAN-------KNSSRRQLYELYALTNHYGGMGSGHY 787
               + K    V +P+ D NL ++++         +S +  LY+LYA+ NH+G M +GHY
Sbjct: 748 DLRRRRKRRDLVVYPVFDLNLKQFLSPFIKDHEWLSSQKSMLYDLYAVDNHHGFMSNGHY 807

Query: 788 TAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYR 826
           TA+ +      ++ FDD+ I  I+ +D+ +++AYVLFYR
Sbjct: 808 TAYARDASSQTFFKFDDTAICEIDPEDIVTSSAYVLFYR 846


>gi|403214829|emb|CCK69329.1| hypothetical protein KNAG_0C02180 [Kazachstania naganishii CBS
           8797]
          Length = 1231

 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 147/564 (26%), Positives = 228/564 (40%), Gaps = 144/564 (25%)

Query: 71  YILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYP-LRLQLLVMPRGEC- 125
           YI +P+E++N    WYG   G   ++  +++   + T +     P  +LQ L+ P  +  
Sbjct: 129 YISIPEEIFNSFVEWYGLSEGSQPVSTVLVTDSTNGTLITEYNKPCFKLQYLINPDQKSR 188

Query: 126 -----------STIRISKKETIGELHRRACSIFY-------LNLEQICIWDYYGHRKHAL 167
                      + +  SK  +IG+   +A   F+       ++  ++ +W          
Sbjct: 189 VFDNHHPGPLYTCVSASKLSSIGDALEQALGNFFKIETHLTVDNSKVNVW---------- 238

Query: 168 MNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEK-KASSVLVEPSKSSLS 226
              + + L +  I + +  L+            + +Q   + EK K +  ++  S   L 
Sbjct: 239 ---LVKNLSEEEITLSEPYLI------------NPMQFLFYPEKIKVTDDILSKSLRELD 283

Query: 227 IAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCF 286
           I  G    +   R+      T  + AS     N L  S         G  GL NLGNTC+
Sbjct: 284 ILNGIFIIETKRRSRK----TKQHWASNYFHYNKLNRS--------TGTIGLSNLGNTCY 331

Query: 287 MNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------------------------ 321
           MNS +QCLVH P+   YF    + +EIN  NPLG                          
Sbjct: 332 MNSGLQCLVHIPQIRDYFVYNGFEKEINVNNPLGFQGHMARSFHGLIQSLFGDSIAPFPS 391

Query: 322 ---------------------------ELLAFLLDGLHEDLNRVKHKPYIKS---KDADG 351
                                      E LAFLLD LHEDLNR+  KPY++    K  D 
Sbjct: 392 YVSPTHFKSTLVHFNSMFSGFQQQDSQEFLAFLLDSLHEDLNRIVEKPYVEKPSLKPGDD 451

Query: 352 RPD----EEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPL 407
             D    +++A+E W +H+ RNDSII D+  G YKSTL CP C+ VS+TFDP+  L+LPL
Sbjct: 452 INDFDTIKKLANETWKSHLMRNDSIITDIFVGMYKSTLECPECSNVSITFDPYNDLTLPL 511

Query: 408 QATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQN 467
              ++    V +F S     P    V +PK    +DL + +   C    ++ L   E+ N
Sbjct: 512 PINSSWNAQVRIFPS--KLPPCMIEVELPKASTYQDLKEYVAK-CLGMNAQNLYGCEVFN 568

Query: 468 HSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPG---------- 517
           H      + P    ST +   +L  Y +       VF +L+      EPG          
Sbjct: 569 HQFYNNFESP---DSTAQ---YLPIYELISESDIVVFYELV-----SEPGDLIIPVLNAI 617

Query: 518 AAQTTSQWKAYGTPLVSSISRDDV 541
           + + ++    +G P   +I   DV
Sbjct: 618 SNKESNNDSLFGVPFFITIKAADV 641



 Score =  145 bits (366), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 69/147 (46%), Positives = 99/147 (67%)

Query: 681  SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKH 740
            +L  CL  F ++E L   D WYCP CKE RQA+KK++LW  P+V +IHLKRF  +RS   
Sbjct: 894  TLKDCLNLFSKKEVLGMSDSWYCPNCKEHRQATKKIELWNTPDVFLIHLKRFENTRSFSD 953

Query: 741  KLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWY 800
            K++  + FPI D ++++Y+  K+  R  +Y+L A+ NHYGGMG GHYTA++K L +  WY
Sbjct: 954  KIDATILFPIEDLDMSEYLVYKDDPRGSVYDLIAVDNHYGGMGGGHYTAYVKNLTDQNWY 1013

Query: 801  NFDDSHISPINEDDVKSAAAYVLFYRR 827
             FDDS +S  + +   + +AY+LFY R
Sbjct: 1014 YFDDSRVSKTSPEKSIAGSAYLLFYLR 1040


>gi|115384454|ref|XP_001208774.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114196466|gb|EAU38166.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1407

 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/153 (45%), Positives = 104/153 (67%), Gaps = 1/153 (0%)

Query: 676  RTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYS 735
            R + ++LY CL+ F +EE L   D WYCP+CKE R+ASKK +LW+ P++LV+HLKRFS S
Sbjct: 1026 RKKGITLYECLDEFNKEEILSENDAWYCPRCKEHRRASKKFELWKTPDILVMHLKRFSAS 1085

Query: 736  RSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLD 795
            R  + KL+  V+FP+   +++  V         +Y+L+A+ NHYGG+G GHYTA+ K   
Sbjct: 1086 RGFRDKLDVLVDFPVEGLDMSGRVEAPEEGESLIYDLFAVDNHYGGLGGGHYTAYAKNFM 1145

Query: 796  ENRWYNFDDSHIS-PINEDDVKSAAAYVLFYRR 827
              +W  ++DS +S PI+   V +++AY+LFYRR
Sbjct: 1146 TGQWNEYNDSSVSRPIDPQSVVTSSAYLLFYRR 1178



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 105/221 (47%), Gaps = 55/221 (24%)

Query: 242 SSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFA 301
           SS++      +S R S       G    G   G TGL NLGNTC+MNSA+QC+    E  
Sbjct: 392 SSKLKNKSPTSSGRSSPVLEPIRGRRKDGKPRGCTGLSNLGNTCYMNSALQCVRSVEELT 451

Query: 302 RYFRED-YRREINWQNPLG--------------MV------------------------- 321
            YF  D Y++++N  NPL               M+                         
Sbjct: 452 YYFLNDVYKQDLNPSNPLAHNGEVAKAYANLLRMIYDENGQSSFAPRQLKNTIGRYGPAF 511

Query: 322 ---------ELLAFLLDGLHEDLNRVKHKPYIKSKDA------DGRPDEEVADEYWANHI 366
                    E L FLLDGL EDLNR++ KPYI+  D+      +    EE A++ W  + 
Sbjct: 512 SGYGQQDSQEFLLFLLDGLQEDLNRIQKKPYIEKPDSTDEMVHNRAALEEFANKCWDIYK 571

Query: 367 ARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPL 407
           ARNDS+I D+  G YKSTLVCP C KVS+ FDPF  L+L L
Sbjct: 572 ARNDSVITDLFAGMYKSTLVCPECKKVSIIFDPFNNLTLQL 612


>gi|145508285|ref|XP_001440092.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124407298|emb|CAK72695.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1029

 Score =  151 bits (381), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 134/553 (24%), Positives = 229/553 (41%), Gaps = 127/553 (22%)

Query: 1   WWQHWIDYVNQDQPNNTGDG------SSLLEHFNSAGSSASKR----PSGIDNSDL--VN 48
           W+Q W  YV  + P    D       + L +  N    S ++     P  ID+S L  V 
Sbjct: 157 WFQKWRQYVRNEDPLVLEDPILGLNVAKLRQILNLNEDSINEEIVVAPGPIDSSRLLQVQ 216

Query: 49  DATAEDPGAGPEIVDTLL-----EGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQ 103
                DP    + ++ +L     EG D+  +  +V+      YG    + +++I     Q
Sbjct: 217 WNLLPDPTESKQYLNYVLRNDLREGVDFFHVSAKVFRFFEKIYGA--IMVKRLIVKQEDQ 274

Query: 104 TELAVEVYPLRLQLLVMP-RGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDY--- 159
               V++ P  +++++M  + + S++ ++  E + EL R+  ++   N  QI  W +   
Sbjct: 275 DRAIVDLVPRVVEIIIMENQQQESSLSVNGFEQVKELTRK-INVIKGNKNQIRWWKFKDL 333

Query: 160 --------------YGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQD 205
                         +     A+  D+   +DD N+   QD+L+  +    G    + +  
Sbjct: 334 QSQLDWMALIQKGAFLKNIKAIELDLKTKIDDLNL-TTQDVLICEIKQDKGMQLTAEVNV 392

Query: 206 NGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSG 265
           +   E+  S +                            IS  P + S            
Sbjct: 393 DQQKEQNVSELY-----------------------KKFGISNIPKIVSE----------- 418

Query: 266 VTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV--- 321
                   G+TGL NLGNTCFMN+A+QCL +T EF  Y   + + + +N  N LG     
Sbjct: 419 -----CKRGMTGLQNLGNTCFMNAALQCLSNTYEFTEYMVYNHFAKHLNPNNVLGTKGFL 473

Query: 322 --------------------------------------------ELLAFLLDGLHEDLNR 337
                                                       E L++LLDGLHEDLNR
Sbjct: 474 AASYAELMKSIWFANYQSVSAIELKKVIGKCAPQFYGYGQQDSHEFLSYLLDGLHEDLNR 533

Query: 338 VKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTF 397
           V +KP +   +     D++ ++++W N+  RN S I ++  GQYKSTLVCP+CN++S TF
Sbjct: 534 VLNKPIVSDIEITNESDQQASEKFWTNYTLRNQSRIQELMVGQYKSTLVCPLCNRISKTF 593

Query: 398 DPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQS 457
           DPFM LSLP+       +++    +D   +PS  ++ +       D+++ L  + ++   
Sbjct: 594 DPFMSLSLPVPNFQIYAVSLYFLYADNEIMPSKISLQLGGDMTGLDILKQLEKLTNVSH- 652

Query: 458 EELKVAEIQNHSI 470
           E + +  I++H I
Sbjct: 653 ERMNMLLIKDHRI 665



 Score =  109 bits (273), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 70/208 (33%), Positives = 109/208 (52%), Gaps = 15/208 (7%)

Query: 631  IRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFL 690
            I IP S+ SI V +  S  L++       +   E+  N   T++ + E   L  C  AF 
Sbjct: 816  IDIPGSNLSIEVII--SDYLVKNTLNLKFQRCQEIPPNPIKTQQGKKE-CDLDDCFTAFT 872

Query: 691  REEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFS----------YSRSMKH 740
            REE L   D WYC +CK+  QASKK+++++ P++L+IHLKRF           +  +   
Sbjct: 873  REEILGKGDEWYCNKCKKHVQASKKMEIYKAPQILIIHLKRFRTNKVTMVGNVFINNQTQ 932

Query: 741  KLETFVNFPIHDFNLTKYVANKNSSRRQL-YELYALTNHYGGMGSGHYTAHIKLLDENRW 799
            K+   V FP+        ++ +    +   Y+LYA+ NHYG    GHYTA+      N+W
Sbjct: 933  KITQLVKFPLELNLNNLVLSKQAGDNQDYTYDLYAVDNHYGSSAGGHYTAYAYNSVLNKW 992

Query: 800  YNFDDSHISPINEDDVKSAAAYVLFYRR 827
             +++DS+   I+  +V   +AY+LFYRR
Sbjct: 993  IDYNDSNTRTIS-TNVVCESAYLLFYRR 1019


>gi|348541545|ref|XP_003458247.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 [Oreochromis
            niloticus]
          Length = 1082

 Score =  151 bits (381), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 69/151 (45%), Positives = 98/151 (64%), Gaps = 1/151 (0%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A T   SL  CL  F +EE L   +  +C  CK  R ++KKL++W++P +L++HLKRFSY
Sbjct: 930  ASTSKCSLQDCLRLFSKEEKLTDNNKVFCRHCKAHRDSTKKLEIWKVPPILLVHLKRFSY 989

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
                K KL+T V+FP+ + +L +YV     S ++ Y LY ++NHYGG+  GHYTA+ K  
Sbjct: 990  EGRWKQKLQTSVDFPLDNLDLAQYVIGPKQSLKR-YNLYGVSNHYGGLDGGHYTAYCKNA 1048

Query: 795  DENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
             + RWY FDD  +S I+   VKS+AAY+LFY
Sbjct: 1049 AKQRWYKFDDHEVSDISTSSVKSSAAYILFY 1079



 Score =  128 bits (321), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/211 (36%), Positives = 103/211 (48%), Gaps = 55/211 (26%)

Query: 249 PNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED- 307
           P+ A  R+ + T G       G    LTGL NLGNTC+MNS +QCL +TP  A YF  + 
Sbjct: 730 PSAAKIRNLNPTFG-------GLGASLTGLRNLGNTCYMNSILQCLCNTPALAEYFNNNC 782

Query: 308 YRREINWQNPLGMV---------------------------------------------- 321
           Y  +IN  N LG                                                
Sbjct: 783 YLEDINRHNILGHKGEVAEEFGVIMKALWAGLYKCISPRDFKITIGKINEQFAGYDQQDS 842

Query: 322 -ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQ 380
            ELL FL+DGLHEDLN+  ++   K ++ D   D+  AD  W+ H   N+SIIV + QGQ
Sbjct: 843 QELLLFLMDGLHEDLNKADNRKRYKEEENDHLDDQTGADLAWSKHKLLNESIIVALFQGQ 902

Query: 381 YKSTLVCPVCNKVSVTFDPFMYLSLPLQATT 411
           +KST+ C  C++ S TF+ FMYLSLPL +T+
Sbjct: 903 FKSTVQCLTCHRKSRTFETFMYLSLPLASTS 933


>gi|346324794|gb|EGX94391.1| ubiquitin C-terminal hydrolase, putative [Cordyceps militaris CM01]
          Length = 1524

 Score =  151 bits (381), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 75/157 (47%), Positives = 109/157 (69%), Gaps = 3/157 (1%)

Query: 672  TKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKR 731
            T+K+R   ++L  CL+ F R E L   DMWYCP+CKE R+ASKK DLW+ P+ LV HLKR
Sbjct: 1226 TRKSRG--ITLDECLDEFERAEILSENDMWYCPRCKEHRRASKKFDLWKTPDYLVTHLKR 1283

Query: 732  FSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHI 791
            FS S   + KL+  V+FPI + +LT  V  K   + ++Y+L A+ +HYGG+G GHYTA+ 
Sbjct: 1284 FSSSGWRRDKLDVLVDFPIEELDLTARVIEKEDGKSEVYDLIAVDDHYGGLGGGHYTAYA 1343

Query: 792  KLLDENRWYNFDDSHISPINE-DDVKSAAAYVLFYRR 827
            K   + +WYN++DS +S +++   V ++AAY+LFY+R
Sbjct: 1344 KNFVDGKWYNYNDSSVSLVSDPQSVITSAAYLLFYKR 1380



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/302 (34%), Positives = 137/302 (45%), Gaps = 75/302 (24%)

Query: 217 LVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGA----- 271
           ++EP + S+S   G   ++ +S   S  +S    ++SAR S    G  GV TRG      
Sbjct: 512 VIEPPRISVSTYKGQQTTQKSSSAGSVFLS---KMSSARSSP---GPEGVMTRGRAGKKK 565

Query: 272 ----SVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGM------ 320
               SVG+ GL NLGNTC+MNSA+QC+    E  ++F    Y  EIN  N LG       
Sbjct: 566 TLGRSVGVVGLHNLGNTCYMNSALQCVRSVEELTKFFITGAYVAEINKTNLLGYNGKIAS 625

Query: 321 -----------------------------------------VELLAFLLDGLHEDLNRVK 339
                                                     E L FLLD L EDL+R+K
Sbjct: 626 TYGGLLRDIYQEGRGSVSPRDFKSTVGRCRSTFSGWGQQDSQEFLGFLLDALQEDLSRIK 685

Query: 340 HKPYIKSKDA------DGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKV 393
           +KPYI+  D+      D     E+A + W     R+DS+I D+  G YKSTL CP C K+
Sbjct: 686 NKPYIEKPDSTDEMIDDPEAIREMAAKVWEITRLRDDSVIADLFTGMYKSTLKCPECGKI 745

Query: 394 SVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICS 453
           S+TFDPF  L LPL   T  + TV  F  +   +P    V +PKH      I+ L    S
Sbjct: 746 SITFDPFNTLPLPLPLETVWSKTVKFFPLND--VPVNIDVELPKHSS----IEALKAYLS 799

Query: 454 LK 455
           L+
Sbjct: 800 LR 801


>gi|238490478|ref|XP_002376476.1| ubiquitin C-terminal hydrolase, putative [Aspergillus flavus
            NRRL3357]
 gi|220696889|gb|EED53230.1| ubiquitin C-terminal hydrolase, putative [Aspergillus flavus
            NRRL3357]
          Length = 1431

 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 74/157 (47%), Positives = 105/157 (66%), Gaps = 3/157 (1%)

Query: 672  TKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKR 731
            T+K R   +SL  CL+ F +EE L   D WYCP+CKE R+ASKK  LWR P++LV+HLKR
Sbjct: 1041 TRKKRG--VSLEECLDEFNKEEILSENDAWYCPRCKEHRRASKKFQLWRTPDILVMHLKR 1098

Query: 732  FSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHI 791
            FS SR  + KL+  V+FP+   +++  V      +  +Y+L+A+ NHYGG+G GHYTA+ 
Sbjct: 1099 FSASRGFRDKLDVLVDFPVEGLDMSGRVEAPEEGKSLVYDLFAVDNHYGGLGGGHYTAYA 1158

Query: 792  KLLDENRWYNFDDSHIS-PINEDDVKSAAAYVLFYRR 827
            K     +W  ++DS +S PI+   V ++AAY+LFYRR
Sbjct: 1159 KNFFTGQWNEYNDSSVSRPIDPQSVVTSAAYLLFYRR 1195



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 109/335 (32%), Positives = 147/335 (43%), Gaps = 65/335 (19%)

Query: 219 EPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGL 278
           E SK +L+  G  S S       SS++      AS R S       G    G   G TGL
Sbjct: 405 EASKQTLNRLGVPSGS--LKNGASSKLKNKSPTASGRSSPVPEPVRGRRKDGKPRGCTGL 462

Query: 279 LNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLG--------------MV-- 321
            NLGNTC+MNSA+QC+    E   YF  D Y++++N  NPL               M+  
Sbjct: 463 SNLGNTCYMNSALQCVRSVEELTYYFLNDVYKQDLNPSNPLAHNGDVAKAYANLLRMIYD 522

Query: 322 --------------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDA 349
                                           E L FLLDGL EDLNR+  KPYI+  D+
Sbjct: 523 EAGQSSFAPRQLKHTIGRYGPAFSGYGQQDSQEFLLFLLDGLQEDLNRILKKPYIEKPDS 582

Query: 350 ------DGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPF--M 401
                 D     E AD+ W  + ARNDS+I D+  G YKSTLVCP C+KVS+ FDPF  +
Sbjct: 583 TDEMVHDKAALTEFADKCWDIYKARNDSVITDLFAGMYKSTLVCPACDKVSIIFDPFNNL 642

Query: 402 YLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELK 461
            L LP++    +     VF       P  + V + K+   + L +++         E L 
Sbjct: 643 TLQLPIENLWGK----EVFYFGLQKKPVRFDVEIDKNSSVKSLKELVAKKQGT-DPERLI 697

Query: 462 VAEIQNHSIQRFLDD-PLISLSTIKDDDHLAAYRV 495
           +AEI      R  D+   I+   I  +D +A + V
Sbjct: 698 MAEIFKRKFYRMFDNTSSIAECQISGNDEIAFFEV 732


>gi|321467443|gb|EFX78433.1| hypothetical protein DAPPUDRAFT_225412 [Daphnia pulex]
          Length = 1555

 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/242 (39%), Positives = 121/242 (50%), Gaps = 52/242 (21%)

Query: 262 GSSGVTTRGA---SVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNP 317
           G SG   R A     G TGL NLGNTCFMN+++QC+ +T    +YF    +  E+N  NP
Sbjct: 659 GQSGDKYRQALPSEKGATGLNNLGNTCFMNASLQCVSNTQALTQYFTSSMHLLELNRDNP 718

Query: 318 LGMV-----------------------------------------------ELLAFLLDG 330
           LGM                                                ELLAFLLDG
Sbjct: 719 LGMKGNIAKDYGDLIRDIWKGRSRTIAPLRLRWTIGKYAPRFNGYQQHDAQELLAFLLDG 778

Query: 331 LHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVC 390
           LHEDLNRV  KPY++  D++GRPD  VA E W NH+ RN SI+V++  GQ KS + C VC
Sbjct: 779 LHEDLNRVHDKPYVELSDSEGRPDIVVAQEAWENHLLRNRSIVVELFHGQLKSKVTCGVC 838

Query: 391 NKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGN 450
            + SV FDPF YLSLPL   +   + V V   DGS +P  Y + +P       L + L  
Sbjct: 839 QRESVRFDPFNYLSLPLPLESYVHVEVVVVRLDGS-VPVKYGLRLPMDATYLLLKERLAA 897

Query: 451 IC 452
           +C
Sbjct: 898 LC 899



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/123 (39%), Positives = 73/123 (59%), Gaps = 8/123 (6%)

Query: 642  VYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKA---RTEPLSLYTCLEAFLREEPLVP 697
            + VDW    L  +Y T    +L +VF   P   KA   +TEP+SL  CL+AF REE L  
Sbjct: 1231 IAVDWEPTALHLRYQT----SLEKVFDEDPSVAKAVHQQTEPVSLEQCLQAFTREEQLSG 1286

Query: 698  EDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTK 757
            ++ +YCP+C   + A+KKL +WRLP +L++HLKRF +      K    V FP ++ + T+
Sbjct: 1287 DEKYYCPKCATHQPATKKLQIWRLPPILIVHLKRFQFVNHRWIKSHKAVQFPHNNLDFTE 1346

Query: 758  YVA 760
            ++A
Sbjct: 1347 FLA 1349



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 59/104 (56%), Gaps = 7/104 (6%)

Query: 1   WWQHWIDYV-NQDQPNNTGDGSSLLEHFNS-AGSSASK--RPSGIDNSDLVNDATAEDP- 55
           WW+ W DYV NQD+   +   S+ L++ +S +GS  +   RP  IDN+ LV  +T +   
Sbjct: 406 WWKQWSDYVTNQDESIKSVPSSASLKNNSSDSGSDLNTVVRPRAIDNTCLVATSTIKATV 465

Query: 56  --GAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVI 97
             G G  +   L + +DY ++P+ +W  L SWYGG P L R+ +
Sbjct: 466 LTGEGGRLRRDLEKAKDYEVVPEAIWKALSSWYGGSPALPRQAV 509



 Score = 47.4 bits (111), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 7/99 (7%)

Query: 735  SRSMKHKLET--FVNFPIHDFNLTKYVANK----NSSRRQLYELYALTNHYGGMGSGHYT 788
            + S + +LE+   +  P+HD +L  +  ++     +     Y LYA   H G MG GHY 
Sbjct: 1408 NESTRKRLESTSLMTHPVHDEDLIDFHQHRLLPGYNKLDITYSLYAAVCHSGIMGGGHYI 1467

Query: 789  AHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            ++ K  +  +W+ ++DS     + + ++   AY+LF+ R
Sbjct: 1468 SYAKNPN-GKWFYYNDSTCKESSANQIEGQTAYMLFFER 1505


>gi|391865595|gb|EIT74874.1| ubiquitin carbon terminal hydrolase [Aspergillus oryzae 3.042]
          Length = 1431

 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 74/157 (47%), Positives = 105/157 (66%), Gaps = 3/157 (1%)

Query: 672  TKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKR 731
            T+K R   +SL  CL+ F +EE L   D WYCP+CKE R+ASKK  LWR P++LV+HLKR
Sbjct: 1041 TRKKRG--VSLEECLDEFNKEEILSENDAWYCPRCKEHRRASKKFQLWRTPDILVMHLKR 1098

Query: 732  FSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHI 791
            FS SR  + KL+  V+FP+   +++  V      +  +Y+L+A+ NHYGG+G GHYTA+ 
Sbjct: 1099 FSASRGFRDKLDVLVDFPVEGLDMSGRVEAPEEGKSLVYDLFAVDNHYGGLGGGHYTAYA 1158

Query: 792  KLLDENRWYNFDDSHIS-PINEDDVKSAAAYVLFYRR 827
            K     +W  ++DS +S PI+   V ++AAY+LFYRR
Sbjct: 1159 KNFFTGQWNEYNDSSVSRPIDPQSVVTSAAYLLFYRR 1195



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 109/335 (32%), Positives = 147/335 (43%), Gaps = 65/335 (19%)

Query: 219 EPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGL 278
           E SK +L+  G  S S       SS++      AS R S       G    G   G TGL
Sbjct: 405 EASKQTLNRLGVPSGS--LKNGASSKLKNKSPTASGRSSPVPEPVRGRRKDGKPRGCTGL 462

Query: 279 LNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLG--------------MV-- 321
            NLGNTC+MNSA+QC+    E   YF  D Y++++N  NPL               M+  
Sbjct: 463 SNLGNTCYMNSALQCVRSVEELTYYFLNDVYKQDLNPSNPLAHNGDVAKAYANLLRMIYD 522

Query: 322 --------------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDA 349
                                           E L FLLDGL EDLNR+  KPYI+  D+
Sbjct: 523 EAGQSSFAPRQLKHTIGRYGPAFSGYGQQDSQEFLLFLLDGLQEDLNRILKKPYIEKPDS 582

Query: 350 ------DGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPF--M 401
                 D     E AD+ W  + ARNDS+I D+  G YKSTLVCP C+KVS+ FDPF  +
Sbjct: 583 TDEMVHDKAALTEFADKCWDIYKARNDSVITDLFAGMYKSTLVCPACDKVSIIFDPFNNL 642

Query: 402 YLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELK 461
            L LP++    +     VF       P  + V + K+   + L +++         E L 
Sbjct: 643 TLQLPIENLWGK----EVFYFGLQKKPVRFDVEIDKNSSVKSLKELVAKKQGT-DPERLI 697

Query: 462 VAEIQNHSIQRFLDD-PLISLSTIKDDDHLAAYRV 495
           +AEI      R  D+   I+   I  +D +A + V
Sbjct: 698 MAEIFKRKFYRMFDNTSSIAECQISGNDEIAFFEV 732


>gi|410080616|ref|XP_003957888.1| hypothetical protein KAFR_0F01560 [Kazachstania africana CBS 2517]
 gi|372464475|emb|CCF58753.1| hypothetical protein KAFR_0F01560 [Kazachstania africana CBS 2517]
          Length = 1171

 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 71/148 (47%), Positives = 100/148 (67%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            ++L  CL  F + E L   D WYCP CKE RQASK++ LW  P+VL+IHLKRF   RS  
Sbjct: 872  ITLNDCLNLFSKREVLGLNDSWYCPHCKEHRQASKRIQLWNTPDVLLIHLKRFENQRSFS 931

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRW 799
             K++  VNFPI + +++ Y+ +K+  R  +Y+LYA+ NHYGG+G GHYTA++K   +N+W
Sbjct: 932  DKIDATVNFPIENLDMSPYLVHKDDPRGTVYDLYAVDNHYGGLGGGHYTAYVKNFIDNKW 991

Query: 800  YNFDDSHISPINEDDVKSAAAYVLFYRR 827
            Y FDDS +   + +   S +AY+LFY R
Sbjct: 992  YYFDDSRVYETDPEKSVSGSAYLLFYLR 1019



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 107/354 (30%), Positives = 162/354 (45%), Gaps = 86/354 (24%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINW------------------ 314
           G  GL NLGNTC+MNSA+QCLVH P+   YF    Y  E+N                   
Sbjct: 321 GTMGLSNLGNTCYMNSALQCLVHIPQLRDYFLYSAYEAELNTDNLIGYKGYVAKAFSSLV 380

Query: 315 QNPLGMV-----------------------------------ELLAFLLDGLHEDLNRVK 339
           QN  G                                     E LAFLLD LHEDLNR+ 
Sbjct: 381 QNLFGDTITKQGTNSSFGPNHFKSTVGHFNSMFSGYLQQDSQEFLAFLLDSLHEDLNRII 440

Query: 340 HKPYIKS---KDADGRPDEEV----ADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNK 392
           +KP  +    K+ D   D  V    ADE W  H+ RNDS+I D+  G YKSTL CP C  
Sbjct: 441 NKPSTEKPSLKEGDDYNDPAVIKSLADETWKMHLLRNDSVITDLFVGMYKSTLECPECTN 500

Query: 393 VSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNIC 452
           VS+TFDP+  L+LPL   +T +  V +F  +    P    + + K+   +DL   +   C
Sbjct: 501 VSITFDPYSDLTLPLPVDSTWSSKVRIFPQNSP--PCILEIELSKNSTYQDLKNYVAK-C 557

Query: 453 SLKQSEELKVAEIQNH----------SIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKA 502
           +   SE+L   E+ ++          S  +FL  PL  L  I + D +  Y +P+  +  
Sbjct: 558 AQMDSEDLYGCEVFSYQFYNNFESAESNSQFL--PLKDL--ISESDVVVFYELPRTAEDD 613

Query: 503 VFLQLIH-RLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRML 555
           V + +++ R++E   G  ++      +G P    +S++++ +   I++ ++++ 
Sbjct: 614 VIVPILNTRIEE---GFNKS----HLFGVPFFIVLSQEELNNPTLIRNKLEKLF 660


>gi|268531894|ref|XP_002631075.1| Hypothetical protein CBG02847 [Caenorhabditis briggsae]
          Length = 1130

 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/270 (33%), Positives = 132/270 (48%), Gaps = 51/270 (18%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLG------------M 320
           G TGL N+GNTCFMN+ +Q LV+  E   +F R+ Y+ EIN  NPLG            M
Sbjct: 413 GYTGLRNIGNTCFMNAILQMLVNNVELREFFLRDHYKMEINESNPLGSEGRLARAFADFM 472

Query: 321 V-----------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
           V                                   E L+FLLDGLHED+NRVK KP   
Sbjct: 473 VQMWNGRHKAIEPVHIKNIVSEKASQFANFAQHDAHEFLSFLLDGLHEDVNRVKKKPLTG 532

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + ++ GR D +V++E W NHI RNDSI VD+  GQ KS + CP C++VS+TFDPF+YL +
Sbjct: 533 TVESHGRHDLDVSNEAWRNHILRNDSIFVDLFHGQLKSHVQCPNCDRVSITFDPFVYLPV 592

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
           P      ++ ++  +  +  A P   TV+    G   D +  +  +  +  +  L+  E 
Sbjct: 593 PF-PKNKKSTSLYFWPVENQAKPFKLTVSYSAEGTVADFLSAVSEMIKVP-TRNLRACEA 650

Query: 466 QNHSIQRFLDDPLISLSTIKDDDHLAAYRV 495
             H   +     +  +S I   D+L  ++ 
Sbjct: 651 LCHRFDKIYTSDM-KVSDIISPDYLFVFQT 679



 Score = 93.6 bits (231), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 14/159 (8%)

Query: 682  LYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY------- 734
            L   L  F   E L PE+ WYC  CKE  +A+K+L L+RLP VL+I LKRF Y       
Sbjct: 942  LTQMLSLFSETERLKPEESWYCSTCKEHVEATKRLQLYRLPPVLIIQLKRFVYTAFTHQT 1001

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQ-LYELYALTNHYGGMGSGHYTAHIKL 793
            S   + K +  V +P+   +++ +++  + S    +Y+L  +  H G    GHY +  +L
Sbjct: 1002 SVHRRSKDDRTVEYPLESLDMSPFLSETSPSHNSTMYDLTGVVCHSGSSYFGHYISLGRL 1061

Query: 794  LDEN------RWYNFDDSHISPINEDDVKSAAAYVLFYR 826
             D +       W  FDDS +  +    V++  AY+LFY+
Sbjct: 1062 ADFDSSKTKIEWRKFDDSMVDRVPSGHVQTNEAYLLFYK 1100


>gi|426233324|ref|XP_004010667.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform 2 [Ovis
           aries]
          Length = 1009

 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 67/151 (44%), Positives = 101/151 (66%), Gaps = 1/151 (0%)

Query: 675 ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
           A T   +L  CL  F +EE L   + +YC  C+ RR + KK+++W+LP VL++HLKRFSY
Sbjct: 848 ASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSY 907

Query: 735 SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
               K KL+T V+FP+ + +L++YV    ++ ++ Y L++++NHYGG+  GHYTA+ K  
Sbjct: 908 DGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKK-YNLFSVSNHYGGLDGGHYTAYCKNA 966

Query: 795 DENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
              RW+ FDD  +S I+   VKS+AAY+LFY
Sbjct: 967 ARQRWFKFDDHEVSDISISSVKSSAAYILFY 997



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/194 (38%), Positives = 98/194 (50%), Gaps = 48/194 (24%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------- 321
           G+   LTGL NLGNTC+MNS +QCL +TP  A YF R  Y+ +IN  N LG         
Sbjct: 662 GSGPALTGLRNLGNTCYMNSILQCLCNTPHLADYFNRNCYQDDINRSNLLGHKGEVAEEF 721

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELL FL+DGLHEDLN+  ++
Sbjct: 722 GIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNR 781

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
              K ++ D   D + A+  W  H   N+SIIV + QGQ+KST+ C  C+K S TF+ FM
Sbjct: 782 KRHKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFM 841

Query: 402 YLSLPLQATTTRTM 415
           YLSLPL +T+  T+
Sbjct: 842 YLSLPLASTSKCTL 855


>gi|317145396|ref|XP_001820749.2| ubiquitin carboxyl-terminal hydrolase [Aspergillus oryzae RIB40]
          Length = 1791

 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 74/157 (47%), Positives = 105/157 (66%), Gaps = 3/157 (1%)

Query: 672  TKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKR 731
            T+K R   +SL  CL+ F +EE L   D WYCP+CKE R+ASKK  LWR P++LV+HLKR
Sbjct: 1401 TRKKRG--VSLEECLDEFNKEEILSENDAWYCPRCKEHRRASKKFQLWRTPDILVMHLKR 1458

Query: 732  FSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHI 791
            FS SR  + KL+  V+FP+   +++  V      +  +Y+L+A+ NHYGG+G GHYTA+ 
Sbjct: 1459 FSASRGFRDKLDVLVDFPVEGLDMSGRVEAPEEGKSLVYDLFAVDNHYGGLGGGHYTAYA 1518

Query: 792  KLLDENRWYNFDDSHIS-PINEDDVKSAAAYVLFYRR 827
            K     +W  ++DS +S PI+   V ++AAY+LFYRR
Sbjct: 1519 KNFFTGQWNEYNDSSVSRPIDPQSVVTSAAYLLFYRR 1555



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 109/335 (32%), Positives = 147/335 (43%), Gaps = 65/335 (19%)

Query: 219  EPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGL 278
            E SK +L+  G  S S       SS++      AS R S       G    G   G TGL
Sbjct: 765  EASKQTLNRLGVPSGS--LKNGASSKLKNKSPTASGRSSPVPEPVRGRRKDGKPRGCTGL 822

Query: 279  LNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLG--------------MV-- 321
             NLGNTC+MNSA+QC+    E   YF  D Y++++N  NPL               M+  
Sbjct: 823  SNLGNTCYMNSALQCVRSVEELTYYFLNDVYKQDLNPSNPLAHNGDVAKAYANLLRMIYD 882

Query: 322  --------------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDA 349
                                            E L FLLDGL EDLNR+  KPYI+  D+
Sbjct: 883  EAGQSSFAPRQLKHTIGRYGPAFSGYGQQDSQEFLLFLLDGLQEDLNRILKKPYIEKPDS 942

Query: 350  ------DGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPF--M 401
                  D     E AD+ W  + ARNDS+I D+  G YKSTLVCP C+KVS+ FDPF  +
Sbjct: 943  TDEMVHDKAALTEFADKCWDIYKARNDSVITDLFAGMYKSTLVCPACDKVSIIFDPFNNL 1002

Query: 402  YLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELK 461
             L LP++    +     VF       P  + V + K+   + L +++         E L 
Sbjct: 1003 TLQLPIENLWGK----EVFYFGLQKKPVRFDVEIDKNSSVKSLKELVAKKQGT-DPERLI 1057

Query: 462  VAEIQNHSIQRFLDD-PLISLSTIKDDDHLAAYRV 495
            +AEI      R  D+   I+   I  +D +A + V
Sbjct: 1058 MAEIFKRKFYRMFDNTSFIAECQISGNDEIAFFEV 1092


>gi|426233322|ref|XP_004010666.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform 1 [Ovis
            aries]
          Length = 1086

 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 67/151 (44%), Positives = 101/151 (66%), Gaps = 1/151 (0%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A T   +L  CL  F +EE L   + +YC  C+ RR + KK+++W+LP VL++HLKRFSY
Sbjct: 925  ASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSY 984

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
                K KL+T V+FP+ + +L++YV    ++ ++ Y L++++NHYGG+  GHYTA+ K  
Sbjct: 985  DGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKK-YNLFSVSNHYGGLDGGHYTAYCKNA 1043

Query: 795  DENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
               RW+ FDD  +S I+   VKS+AAY+LFY
Sbjct: 1044 ARQRWFKFDDHEVSDISISSVKSSAAYILFY 1074



 Score =  127 bits (319), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/194 (38%), Positives = 98/194 (50%), Gaps = 48/194 (24%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------- 321
           G+   LTGL NLGNTC+MNS +QCL +TP  A YF R  Y+ +IN  N LG         
Sbjct: 739 GSGPALTGLRNLGNTCYMNSILQCLCNTPHLADYFNRNCYQDDINRSNLLGHKGEVAEEF 798

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELL FL+DGLHEDLN+  ++
Sbjct: 799 GIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNR 858

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
              K ++ D   D + A+  W  H   N+SIIV + QGQ+KST+ C  C+K S TF+ FM
Sbjct: 859 KRHKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFM 918

Query: 402 YLSLPLQATTTRTM 415
           YLSLPL +T+  T+
Sbjct: 919 YLSLPLASTSKCTL 932


>gi|403365930|gb|EJY82756.1| Ubiquitin carboxyl-terminal hydrolase [Oxytricha trifallax]
          Length = 828

 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 66/158 (41%), Positives = 101/158 (63%), Gaps = 1/158 (0%)

Query: 670 PVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHL 729
           P+    +    +L  C+E F REE L  +D W CP+CK  ++ASKK+D+W+LP +L++HL
Sbjct: 393 PIPSGYKGRNPTLEECVEEFTREEILDGDDKWKCPKCKINQRASKKIDIWKLPSILIVHL 452

Query: 730 KRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTA 789
           KRF +      K+  +V+FP+H+ NLT YV+ K    + +Y+L+A++NH G +G GHY A
Sbjct: 453 KRFEFHEKRYGKINDYVDFPLHNLNLTPYVS-KLQREKPIYDLFAVSNHEGYLGGGHYYA 511

Query: 790 HIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             K      WY+FDD  +  I+++ V SA AY+LFY +
Sbjct: 512 FTKHRQNQLWYSFDDDIVKRISDEKVTSAGAYILFYSK 549



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 96/220 (43%), Gaps = 71/220 (32%)

Query: 259 NTLGSSGVTTRG---ASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINW 314
           N LG +  TT        GL G+ N+GNTCF+N+AIQCL        +F  D + + IN 
Sbjct: 175 NKLGVAFSTTEANLAMDAGLCGIYNMGNTCFLNTAIQCLSAVQPLTDFFLGDLHEQTINK 234

Query: 315 QNPLGMV-----------------------------------------ELLAFLLDGLHE 333
            NP+G                                           E LA+LLD LHE
Sbjct: 235 TNPMGTSGEISIYFANLLKDIWRGKEEKIYPQKLLKKLNEFAPHQDAQEFLAYLLDCLHE 294

Query: 334 DLNR------------VKHKPYIKS-----------KDADGRPDEE---VADEYWANHIA 367
           DLNR            + HK  I+S           ++  G  +E    +A + W +H+ 
Sbjct: 295 DLNRADKFNNLKKQKEIDHKKKIQSLTLGKQETEQQENFAGYSEERQELIAYDAWKDHLF 354

Query: 368 RNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPL 407
            N SIIVD+ QGQ KS L C  C  +S+ FD FMYLS+P+
Sbjct: 355 NNRSIIVDLFQGQLKSALKCLTCQHMSIKFDSFMYLSVPI 394


>gi|402874297|ref|XP_003900978.1| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase
            8 [Papio anubis]
          Length = 1109

 Score =  150 bits (378), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 67/151 (44%), Positives = 101/151 (66%), Gaps = 1/151 (0%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A T   +L  CL  F +EE L   + +YC  C+ RR + KK+++W+LP VL++HLKRFSY
Sbjct: 948  ASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSY 1007

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
                K KL+T V+FP+ + +L++YV    ++ ++ Y L++++NHYGG+  GHYTA+ K  
Sbjct: 1008 DGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKK-YNLFSVSNHYGGLDGGHYTAYCKNA 1066

Query: 795  DENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
               RW+ FDD  +S I+   VKS+AAY+LFY
Sbjct: 1067 ARQRWFKFDDHEVSDISISSVKSSAAYILFY 1097



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/194 (37%), Positives = 97/194 (50%), Gaps = 48/194 (24%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------- 321
           G+   LTGL NLGNTC+MNS +QCL + P  A YF R  Y+ +IN  N LG         
Sbjct: 762 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEF 821

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELL FL+DGLHEDLN+  ++
Sbjct: 822 GIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNR 881

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
              K ++ +   D + A+  W  H   N+SIIV + QGQ+KST+ C  C+K S TF+ FM
Sbjct: 882 KRYKEENNEHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFM 941

Query: 402 YLSLPLQATTTRTM 415
           YLSLPL +T+  T+
Sbjct: 942 YLSLPLASTSKCTL 955


>gi|83768610|dbj|BAE58747.1| unnamed protein product [Aspergillus oryzae RIB40]
          Length = 1168

 Score =  150 bits (378), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 74/157 (47%), Positives = 105/157 (66%), Gaps = 3/157 (1%)

Query: 672  TKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKR 731
            T+K R   +SL  CL+ F +EE L   D WYCP+CKE R+ASKK  LWR P++LV+HLKR
Sbjct: 1004 TRKKRG--VSLEECLDEFNKEEILSENDAWYCPRCKEHRRASKKFQLWRTPDILVMHLKR 1061

Query: 732  FSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHI 791
            FS SR  + KL+  V+FP+   +++  V      +  +Y+L+A+ NHYGG+G GHYTA+ 
Sbjct: 1062 FSASRGFRDKLDVLVDFPVEGLDMSGRVEAPEEGKSLVYDLFAVDNHYGGLGGGHYTAYA 1121

Query: 792  KLLDENRWYNFDDSHIS-PINEDDVKSAAAYVLFYRR 827
            K     +W  ++DS +S PI+   V ++AAY+LFYRR
Sbjct: 1122 KNFFTGQWNEYNDSSVSRPIDPQSVVTSAAYLLFYRR 1158



 Score =  139 bits (350), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 109/335 (32%), Positives = 147/335 (43%), Gaps = 65/335 (19%)

Query: 219 EPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGL 278
           E SK +L+  G  S S       SS++      AS R S       G    G   G TGL
Sbjct: 368 EASKQTLNRLGVPSGS--LKNGASSKLKNKSPTASGRSSPVPEPVRGRRKDGKPRGCTGL 425

Query: 279 LNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLG--------------MV-- 321
            NLGNTC+MNSA+QC+    E   YF  D Y++++N  NPL               M+  
Sbjct: 426 SNLGNTCYMNSALQCVRSVEELTYYFLNDVYKQDLNPSNPLAHNGDVAKAYANLLRMIYD 485

Query: 322 --------------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDA 349
                                           E L FLLDGL EDLNR+  KPYI+  D+
Sbjct: 486 EAGQSSFAPRQLKHTIGRYGPAFSGYGQQDSQEFLLFLLDGLQEDLNRILKKPYIEKPDS 545

Query: 350 ------DGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPF--M 401
                 D     E AD+ W  + ARNDS+I D+  G YKSTLVCP C+KVS+ FDPF  +
Sbjct: 546 TDEMVHDKAALTEFADKCWDIYKARNDSVITDLFAGMYKSTLVCPACDKVSIIFDPFNNL 605

Query: 402 YLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELK 461
            L LP++    +     VF       P  + V + K+   + L +++         E L 
Sbjct: 606 TLQLPIENLWGK----EVFYFGLQKKPVRFDVEIDKNSSVKSLKELVAKKQGT-DPERLI 660

Query: 462 VAEIQNHSIQRFLDD-PLISLSTIKDDDHLAAYRV 495
           +AEI      R  D+   I+   I  +D +A + V
Sbjct: 661 MAEIFKRKFYRMFDNTSFIAECQISGNDEIAFFEV 695


>gi|194034734|ref|XP_001927765.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 [Sus scrofa]
          Length = 1117

 Score =  150 bits (378), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 67/151 (44%), Positives = 100/151 (66%), Gaps = 1/151 (0%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A T   +L  CL  F +EE L   + +YC  C+ RR + KK+++W+LP VL++HLKRFSY
Sbjct: 956  ASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSY 1015

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
                K KL+T V+FP+ + +L +YV    ++ ++ Y L++++NHYGG+  GHYTA+ K  
Sbjct: 1016 DGRWKQKLQTSVDFPLENLDLAQYVIGPKNNLKK-YNLFSVSNHYGGLDGGHYTAYCKNA 1074

Query: 795  DENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
               RW+ FDD  +S I+   VKS+AAY+LFY
Sbjct: 1075 ARQRWFKFDDHEVSDISISSVKSSAAYILFY 1105



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/194 (38%), Positives = 97/194 (50%), Gaps = 48/194 (24%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------- 321
           G+   LTGL NLGNTC+MNS +QCL + P  A YF R  Y+ +IN  N LG         
Sbjct: 770 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQEDINRSNLLGHKGEVAEEF 829

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELL FL+DGLHEDLN+  ++
Sbjct: 830 GIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNR 889

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
              K ++ D   D + A+  W  H   N+SIIV + QGQ+KST+ C  C+K S TF+ FM
Sbjct: 890 KRHKEENNDHLDDFKAAEYAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFM 949

Query: 402 YLSLPLQATTTRTM 415
           YLSLPL +T+  T+
Sbjct: 950 YLSLPLASTSKCTL 963


>gi|115497674|ref|NP_001069594.1| ubiquitin carboxyl-terminal hydrolase 8 [Bos taurus]
 gi|113911783|gb|AAI22572.1| Ubiquitin specific peptidase 8 [Bos taurus]
 gi|296483106|tpg|DAA25221.1| TPA: ubiquitin specific peptidase 8 [Bos taurus]
          Length = 1085

 Score =  150 bits (378), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 67/151 (44%), Positives = 101/151 (66%), Gaps = 1/151 (0%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A T   +L  CL  F +EE L   + +YC  C+ RR + KK+++W+LP VL++HLKRFSY
Sbjct: 924  ASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSY 983

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
                K KL+T V+FP+ + +L++YV    ++ ++ Y L++++NHYGG+  GHYTA+ K  
Sbjct: 984  DGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKK-YNLFSVSNHYGGLDGGHYTAYCKNA 1042

Query: 795  DENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
               RW+ FDD  +S I+   VKS+AAY+LFY
Sbjct: 1043 ARQRWFKFDDHEVSDISISSVKSSAAYILFY 1073



 Score =  127 bits (319), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/194 (38%), Positives = 98/194 (50%), Gaps = 48/194 (24%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------- 321
           G+   LTGL NLGNTC+MNS +QCL +TP  A YF R  Y+ +IN  N LG         
Sbjct: 738 GSGPALTGLRNLGNTCYMNSILQCLCNTPHLADYFNRNCYQDDINRSNLLGHKGEVAEEF 797

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELL FL+DGLHEDLN+  ++
Sbjct: 798 GIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNR 857

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
              K ++ D   D + A+  W  H   N+SIIV + QGQ+KST+ C  C+K S TF+ FM
Sbjct: 858 KRHKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFM 917

Query: 402 YLSLPLQATTTRTM 415
           YLSLPL +T+  T+
Sbjct: 918 YLSLPLASTSKCTL 931


>gi|403345866|gb|EJY72314.1| Ubiquitin carboxyl-terminal hydrolase [Oxytricha trifallax]
          Length = 1225

 Score =  150 bits (378), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 90/277 (32%), Positives = 131/277 (47%), Gaps = 49/277 (17%)

Query: 269 RGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM------- 320
           R +  GL GL NLGNTCFMNS IQCL +T    +Y     Y   IN +N LG        
Sbjct: 588 RESRGGLVGLQNLGNTCFMNSVIQCLANTEPLVKYLVYGCYEDHINKRNTLGTRGRLASV 647

Query: 321 ----------------------------------------VELLAFLLDGLHEDLNRVKH 340
                                                    E+L+FLL+ LHEDLN V  
Sbjct: 648 FSDLLTEMYIGTNSYVAPWDVKNVISRRAIQFQGFAQHDSQEMLSFLLETLHEDLNDVSA 707

Query: 341 KPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPF 400
           KPY++ KD DGR D+ ++ EYW     R  S+ VD+  GQ KS + C VCNK+S++FDPF
Sbjct: 708 KPYVEYKDFDGRKDDIISTEYWEGFKKREKSLFVDLFYGQLKSRVQCTVCNKISISFDPF 767

Query: 401 MYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQ-VLGNICSLKQSEE 459
             LS+P+  T  + +T+  F          +T+ V +    R++ Q +L N     Q +E
Sbjct: 768 NMLSVPIPQTKEQKVTIKYFPYKFEEEHKEFTLVVGEQFNLREIRQKILENQSPESQCKE 827

Query: 460 LKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVP 496
           L + +++N S    LD+   + + ++  +   A+  P
Sbjct: 828 LFLTKVKNKSAIYLLDNDRATRNNLEKGEEFCAFENP 864



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 68/163 (41%), Positives = 102/163 (62%), Gaps = 4/163 (2%)

Query: 669  GPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIH 728
            G   +  +   +S+Y C+  F +EE L   D WYC QCK+ + A KK++L+R PE L+IH
Sbjct: 1059 GASNQVMKKSGISIYDCISWFSQEETLTGNDKWYCSQCKQHQNALKKMELYRAPEFLIIH 1118

Query: 729  LKRFSYSRS---MKHKLETFVNFPIHDFNLTKYVANKNSSRRQ-LYELYALTNHYGGMGS 784
            LKRFS+ R+      K++  ++FP+   +L  Y    +S++ Q +Y+LYA++NHYG +  
Sbjct: 1119 LKRFSHQRASFFSSRKIQELIDFPVEGLDLRNYCLQSSSNKEQYIYDLYAVSNHYGSLNG 1178

Query: 785  GHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            GHYTA  +     RWY FDDS +S I+   + + A+YVLFYRR
Sbjct: 1179 GHYTAFAQNPINKRWYEFDDSDVSRIDSSKIATKASYVLFYRR 1221


>gi|366998069|ref|XP_003683771.1| hypothetical protein TPHA_0A02540 [Tetrapisispora phaffii CBS 4417]
 gi|357522066|emb|CCE61337.1| hypothetical protein TPHA_0A02540 [Tetrapisispora phaffii CBS 4417]
          Length = 1286

 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 164/369 (44%), Gaps = 80/369 (21%)

Query: 273 VGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFR-EDYRREINWQNPLGMV---------- 321
           VG  GL NLGNTC+MNSA+QCL H P    YF+   Y+ EIN  NPLG            
Sbjct: 395 VGNVGLNNLGNTCYMNSALQCLAHIPPIRDYFKFGAYKNEINLDNPLGFQGNIANAFSAL 454

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   E LAFLLDGLHEDLNR+K K
Sbjct: 455 VQNLYKNQFIPSASYAPSQFKLTIGHYNQMFSGYFQQDSQEFLAFLLDGLHEDLNRIKDK 514

Query: 342 PYI-KSKDADGRPDEE------VADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVS 394
           PY+ K   ADG    +      +A +    H+ RNDSII+D+  G YKSTL CPVCN VS
Sbjct: 515 PYVEKPSLADGSDVNDYNIIARLAADTLEAHLKRNDSIIIDLFVGLYKSTLKCPVCNHVS 574

Query: 395 VTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSL 454
           +TFDP+  L+LP+   +     V +F  +    P    V + K    ++L + + NI ++
Sbjct: 575 ITFDPYCDLTLPIPVESVWNFKVKIFPQNSP--PCIMEVELKKTSTYQELKEYVSNIVNI 632

Query: 455 KQSEELKVAEIQNHSIQRFLDD--------PLISLSTIKDDDHLAAYRVPKLVKKAVFLQ 506
              + L   EI NH +  + +         P+  L  I D D +  Y +     K +   
Sbjct: 633 -AFDSLYGCEIYNHQVFNYFESLTSSSRYLPIKEL--ISDLDDIIFYELIVDPDKHMVFP 689

Query: 507 LIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQ---RMLSPFLKKES 563
           +++ L +       T      +G P    + ++D+ + G I+ +++     LS       
Sbjct: 690 VLNTLID------GTYKSPMLFGVPFFIVLRKEDLNNPGAIRKSLEISFSKLSGGFGSFP 743

Query: 564 LMHADSFDP 572
           ++ +  FDP
Sbjct: 744 ILLSKQFDP 752



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/165 (43%), Positives = 107/165 (64%)

Query: 663  LEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLP 722
            +E+ K   + +    + ++L   L  F R E L   D WYCP+CK  RQASK++ LW  P
Sbjct: 945  VELEKTRELGQDKEEKNITLEDSLNLFERAEVLGINDSWYCPKCKHHRQASKQIQLWSTP 1004

Query: 723  EVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGM 782
            ++L IHLKRF    S   K++  V+FPI+  +L+K++ +K++S+  +Y+L A+ NHYGG+
Sbjct: 1005 DILTIHLKRFETQGSFSDKIDDVVDFPINGLDLSKHILDKSTSQLNIYDLIAVDNHYGGL 1064

Query: 783  GSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            G GHYTA+IK L +N+WY FDDS +S    +   + +AY+LFY R
Sbjct: 1065 GGGHYTAYIKNLIDNKWYYFDDSRVSETVPERSVAGSAYLLFYMR 1109


>gi|149691949|ref|XP_001501973.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform 1 [Equus
            caballus]
          Length = 1117

 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 67/151 (44%), Positives = 100/151 (66%), Gaps = 1/151 (0%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A T   +L  CL  F +EE L   + +YC  C+ RR + KK+++W+LP VL++HLKRFSY
Sbjct: 956  ASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSY 1015

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
                K KL+T V+FP+ + +L++YV    ++ ++ Y L++++NHYGG+  GHYTA+ K  
Sbjct: 1016 DGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKK-YNLFSVSNHYGGLDGGHYTAYCKNA 1074

Query: 795  DENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
               RW+ FDD  +S I    VKS+AAY+LFY
Sbjct: 1075 ARQRWFKFDDHEVSDIAVSSVKSSAAYILFY 1105



 Score =  125 bits (314), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/194 (38%), Positives = 97/194 (50%), Gaps = 48/194 (24%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------- 321
           G+   LTGL NLGNTC+MNS +QCL + P  A YF R  Y+ +IN  N LG         
Sbjct: 770 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEF 829

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELL FL+DGLHEDLN+  ++
Sbjct: 830 GIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNR 889

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
              K ++ D   D + A+  W  H   N+SIIV + QGQ+KST+ C  C+K S TF+ FM
Sbjct: 890 KRHKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFM 949

Query: 402 YLSLPLQATTTRTM 415
           YLSLPL +T+  T+
Sbjct: 950 YLSLPLASTSKCTL 963


>gi|338716960|ref|XP_003363554.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 [Equus caballus]
          Length = 1011

 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 67/151 (44%), Positives = 100/151 (66%), Gaps = 1/151 (0%)

Query: 675 ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
           A T   +L  CL  F +EE L   + +YC  C+ RR + KK+++W+LP VL++HLKRFSY
Sbjct: 850 ASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSY 909

Query: 735 SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
               K KL+T V+FP+ + +L++YV    ++ ++ Y L++++NHYGG+  GHYTA+ K  
Sbjct: 910 DGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKK-YNLFSVSNHYGGLDGGHYTAYCKNA 968

Query: 795 DENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
              RW+ FDD  +S I    VKS+AAY+LFY
Sbjct: 969 ARQRWFKFDDHEVSDIAVSSVKSSAAYILFY 999



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/194 (38%), Positives = 97/194 (50%), Gaps = 48/194 (24%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------- 321
           G+   LTGL NLGNTC+MNS +QCL + P  A YF R  Y+ +IN  N LG         
Sbjct: 664 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEF 723

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELL FL+DGLHEDLN+  ++
Sbjct: 724 GIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNR 783

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
              K ++ D   D + A+  W  H   N+SIIV + QGQ+KST+ C  C+K S TF+ FM
Sbjct: 784 KRHKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFM 843

Query: 402 YLSLPLQATTTRTM 415
           YLSLPL +T+  T+
Sbjct: 844 YLSLPLASTSKCTL 857


>gi|403346439|gb|EJY72618.1| Ubiquitin carboxyl-terminal hydrolase [Oxytricha trifallax]
          Length = 1418

 Score =  149 bits (377), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 90/277 (32%), Positives = 131/277 (47%), Gaps = 49/277 (17%)

Query: 269  RGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM------- 320
            R +  GL GL NLGNTCFMNS IQCL +T    +Y     Y   IN +N LG        
Sbjct: 781  RESRGGLVGLQNLGNTCFMNSVIQCLANTEPLVKYLVYGCYEDHINKRNTLGTRGRLASV 840

Query: 321  ----------------------------------------VELLAFLLDGLHEDLNRVKH 340
                                                     E+L+FLL+ LHEDLN V  
Sbjct: 841  FSDLLTEMYIGTNSYVAPWDVKNVISRRAIQFQGFAQHDSQEMLSFLLETLHEDLNDVSA 900

Query: 341  KPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPF 400
            KPY++ KD DGR D+ ++ EYW     R  S+ VD+  GQ KS + C VCNK+S++FDPF
Sbjct: 901  KPYVEYKDFDGRKDDIISTEYWEGFKKREKSLFVDLFYGQLKSRVQCTVCNKISISFDPF 960

Query: 401  MYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQ-VLGNICSLKQSEE 459
              LS+P+  T  + +T+  F          +T+ V +    R++ Q +L N     Q +E
Sbjct: 961  NMLSVPIPQTKEQKVTIKYFPYKFEEEHKEFTLVVGEQFNLREIRQKILENQSPESQCKE 1020

Query: 460  LKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVP 496
            L + +++N S    LD+   + + ++  +   A+  P
Sbjct: 1021 LFLTKVKNKSAIYLLDNDRATRNNLEKGEEFCAFENP 1057



 Score =  149 bits (376), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 68/163 (41%), Positives = 102/163 (62%), Gaps = 4/163 (2%)

Query: 669  GPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIH 728
            G   +  +   +S+Y C+  F +EE L   D WYC QCK+ + A KK++L+R PE L+IH
Sbjct: 1252 GASNQVMKKSGISIYDCISWFSQEETLTGNDKWYCSQCKQHQNALKKMELYRAPEFLIIH 1311

Query: 729  LKRFSYSRS---MKHKLETFVNFPIHDFNLTKYVANKNSSRRQ-LYELYALTNHYGGMGS 784
            LKRFS+ R+      K++  ++FP+   +L  Y    +S++ Q +Y+LYA++NHYG +  
Sbjct: 1312 LKRFSHQRASFFSSRKIQELIDFPVEGLDLRNYCLQSSSNKEQYIYDLYAVSNHYGSLNG 1371

Query: 785  GHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            GHYTA  +     RWY FDDS +S I+   + + A+YVLFYRR
Sbjct: 1372 GHYTAFAQNPINKRWYEFDDSDVSRIDSSKIATKASYVLFYRR 1414


>gi|378731406|gb|EHY57865.1| ubiquitin thiolesterase [Exophiala dermatitidis NIH/UT8656]
          Length = 1511

 Score =  149 bits (377), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 159/569 (27%), Positives = 238/569 (41%), Gaps = 126/569 (22%)

Query: 41  IDNSDL---VNDATAEDPGAGPEIVD---TLLEGRDYILLPQEVWNQLHSWYG---GGPT 91
           IDNSD+   + ++T     AG   V     L  G DY +LPQE W+ + SWYG     P 
Sbjct: 169 IDNSDIAMVIEESTRLLDEAGEPYVPLRPGLTMGEDYEVLPQEAWDLIVSWYGVAKDSPI 228

Query: 92  LARKV--ISSGLSQTELAVEVYPLRLQLLVMPRGECSTIR-----------ISKKETIGE 138
           + R     S   +   +  E+ P     L +P    +  +            SKKE I E
Sbjct: 229 ITRYAHDWSEPDALPNVTWELSPPIFSFLKVPSEHTTQTQREKDLPPQRLLASKKENINE 288

Query: 139 LHRRACSIFYL-NLEQICIWDYYGHRKHA----------------------LMNDMDRTL 175
             +    +  + N  ++ +W   G  K +                      + +  D+ L
Sbjct: 289 WLKEGKRLLGIDNNTKVRVWRVLGGLKSSGNSGVLTPAASRSASPAPGAEIIASAGDKML 348

Query: 176 DDAN----IQM-DQDILVEVLDNVNGT--NCKSSIQDNGFAEKKASSVLVEPSKSSLSIA 228
            D N    +Q+ +Q  L+   D+      N KS++   G    +   +++E  KS     
Sbjct: 349 LDVNTFVHLQIGEQRELLNAPDHTANPKYNGKSTLSTVGLGRDEV--IVLEEQKSG---K 403

Query: 229 GGWSASKGTSRNHSSEISTSP-NLASARDSDNTLGSSGVTTRGASV------GLTGLLNL 281
             W  S+    +    + T+P NLAS   S  +  + G+ TRG         G+TGL NL
Sbjct: 404 DEW-PSENPKLSLGKALKTAPKNLAS---SGRSSPAPGMMTRGRQKRDGRPRGITGLSNL 459

Query: 282 GNTCFMNSAIQCLVHTPEFARYFREDY-RREINWQNPLG--------------------- 319
           GNTC+MNSA+QCL    E  +YF  DY ++++N +N LG                     
Sbjct: 460 GNTCYMNSALQCLRSVEELTQYFLHDYWKQDLNVENALGHHGEVAKAYANLLHQIYDENA 519

Query: 320 --------------------------MVELLAFLLDGLHEDLNRVKHKPYIKSKDA---- 349
                                       E L FLLDGL EDLNR+  KPYI+  D+    
Sbjct: 520 SSTNPSRFKAIIGKYGPSFSGYQQQDSQEFLLFLLDGLQEDLNRIHKKPYIEKPDSTDDM 579

Query: 350 --DGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPL 407
             D    +E AD+ W  + ARNDS++ D+  G YKSTL CPVC+KVS+ FDPF  L+L L
Sbjct: 580 VHDTAALKEFADKNWEIYKARNDSVVTDLFAGMYKSTLTCPVCHKVSIIFDPFNNLTLQL 639

Query: 408 QATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQN 467
                    +  F       P    V + KH   + L + + +   +   + L VAE   
Sbjct: 640 PIENNWQKEILYFPL--HKRPIRIDVDIDKHSSIKGLKEFVASRTHV-DVDRLLVAEAYK 696

Query: 468 HSIQRFLDDP-LISLSTIKDDDHLAAYRV 495
           + I +  D+  +IS + I+  D +  Y +
Sbjct: 697 NKIYKIFDNNIIISEANIQAGDIICVYEL 725



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 67/149 (44%), Positives = 102/149 (68%), Gaps = 1/149 (0%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            +SL  CL  F + E L  ++ WYCP+CKE R+A K  +LW+ P++LV+HLKRFS +R+ +
Sbjct: 1123 ISLEDCLNEFGKPETLSEQNAWYCPRCKEHRRAEKMFELWKAPDILVMHLKRFSSNRNFR 1182

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRW 799
             KLE  V++P+   +L+  V ++   +  +Y+L A+ NHYGG+G GHYTA+ K    N W
Sbjct: 1183 DKLEVKVDYPVEGLDLSAMVRDQQDGKSLIYDLIAVDNHYGGLGGGHYTAYAKNFVNNMW 1242

Query: 800  YNFDDSHISPINED-DVKSAAAYVLFYRR 827
            Y F+DSH++  ++   V ++AAY+LFYRR
Sbjct: 1243 YEFNDSHVTQKSDPRSVVTSAAYLLFYRR 1271


>gi|403160479|ref|XP_003320979.2| hypothetical protein PGTG_02021 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|375170264|gb|EFP76560.2| hypothetical protein PGTG_02021 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1235

 Score =  149 bits (377), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 72/178 (40%), Positives = 106/178 (59%), Gaps = 22/178 (12%)

Query: 670  PVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHL 729
            P+  K     +SL  CL+AFL+EE +  +D W CP+CK RR+A+K+L L +LP +L+IHL
Sbjct: 1058 PIPNKRGISKVSLTQCLDAFLKEEIMEKDDAWNCPKCKTRRKATKRLSLAKLPPILLIHL 1117

Query: 730  KRFSYSRSMKHKLETFVNFPIHDFNLTKY--------------------VANKNSSRRQL 769
            KRFS+      KLETFV +P++  +L+ Y                    VA ++S    +
Sbjct: 1118 KRFSFKGPFSDKLETFVQYPLYGLDLSSYVPPPLSPAALSNELKPVYEDVATRSSPESNI 1177

Query: 770  YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            Y+LYA+ NH+G + SGHYTA  +   +  WYN  DS +S  +E  VK+ +AY+L +RR
Sbjct: 1178 YDLYAVCNHFGSLSSGHYTAFAR--SQKDWYNIGDSRVSKTDEKSVKARSAYLLCFRR 1233



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 72/154 (46%), Gaps = 39/154 (25%)

Query: 293  CLVHTPEFARYFRE-DYRREINWQNPLG--------MVELLAFLLDGLHEDLNRVKHKPY 343
            CL  T   AR+F++  Y+R IN  NPLG        + EL+  L    +  ++ +  K  
Sbjct: 906  CLSATIPLARFFKDGSYKRCINRTNPLGTQGLLAESVAELVRVLWGAQYTFVSPITFKDA 965

Query: 344  I----------KSKDADGRPDE----------EVADEYWANHIA----------RNDSII 373
            I            +DA G P++          E A E     IA          R++S+I
Sbjct: 966  ICRFAPKFRGSDQQDAQGSPNKPPPLEMTPEREAALETLPTQIASAKEWEIYKRRDNSVI 1025

Query: 374  VDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPL 407
            V++ QGQY+S L C  CN  S T++ FMYLSLP+
Sbjct: 1026 VELFQGQYRSRLQCLTCNTTSTTYNTFMYLSLPI 1059


>gi|367012327|ref|XP_003680664.1| hypothetical protein TDEL_0C05640 [Torulaspora delbrueckii]
 gi|359748323|emb|CCE91453.1| hypothetical protein TDEL_0C05640 [Torulaspora delbrueckii]
          Length = 1178

 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 108/365 (29%), Positives = 178/365 (48%), Gaps = 56/365 (15%)

Query: 490  LAAYRVPKLVKKAVFLQ---LIHRLQEQEPGA--AQTTSQWKA-----YG-----TPLVS 534
            L AY VP+      F     L + + +  PG+  +  TS W       YG     T ++ 
Sbjct: 679  LLAYAVPEDSNVNEFFSIGILQNHVVDIGPGSNPSGETSFWAPTSRLDYGRAKNLTEMLD 738

Query: 535  SISRDDVISSGKIQSTVQRMLSPFLKKESLMHAD-SFDPSSMVTTVDPSGEAHSNSSSNI 593
            +ISRD +         ++ M  P  +   ++HA    D       +D  G++ S +  NI
Sbjct: 739  NISRD-IYDYPNFVHNIEAMNEPSNESSYMLHARRQSDDEKSDPDIDAEGDSRSLNDENI 797

Query: 594  AKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWS-QKLLE 652
              E  S++                         GD+++R    S   V+  +WS  ++ E
Sbjct: 798  IVETDSNTDT-----------------------GDRSLRNNIISPRDVIICEWSASRVGE 834

Query: 653  KYN----------THFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWY 702
             +N             + N +E  K     ++ R   +SL+ CL+ F ++E L   D WY
Sbjct: 835  VFNEDTQINWNKPAKLVNNEVEARKKEAEGQEKRA--ISLHDCLKLFSKKEVLSMNDSWY 892

Query: 703  CPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANK 762
            CP CK+ RQA+K++ LW  P+VL+IHLKRF   RS   K++  V+FPI   ++T+++ ++
Sbjct: 893  CPTCKDHRQATKQIQLWSTPDVLLIHLKRFENQRSFSDKIDDTVHFPIKSLDMTEHLVHE 952

Query: 763  NSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYV 822
            +  R  +Y+L A+ NH+GG+G GHYTA++K  D  +W+ FDDS ++    +   + +AY+
Sbjct: 953  D-PRGSIYDLIAVDNHFGGLGGGHYTAYVKTND--KWFYFDDSRVTETKPESSIAGSAYL 1009

Query: 823  LFYRR 827
            LFY R
Sbjct: 1010 LFYLR 1014



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 95/263 (36%), Positives = 120/263 (45%), Gaps = 63/263 (23%)

Query: 268 TRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLG------- 319
           T   S G+TGL NLGNTC+MNSA+QCLVH PE   YF  D +  EIN  NPLG       
Sbjct: 294 TLQPSQGITGLTNLGNTCYMNSALQCLVHIPELRDYFLYDGFTSEINSDNPLGYQGNIAK 353

Query: 320 ----------------------------MV-----------------ELLAFLLDGLHED 334
                                       M+                 E LAFLLDGLHED
Sbjct: 354 AFSLLVKSLFGASYGSASSQAFSPNNFKMIMGHCNTMFSGYMQQDSQEFLAFLLDGLHED 413

Query: 335 LNRVKHKPYIKSKDADGRPD-------EEVADEYWANHIARNDSIIVDVCQGQYKSTLVC 387
           LNRV  KPYI+        D       +++A++ W  H+ RNDSI+ D+    Y+STL C
Sbjct: 414 LNRVHDKPYIEKPSLSPNSDVTDRDTIKKLAEDTWKMHLLRNDSIVTDLFVALYESTLEC 473

Query: 388 PVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQV 447
           P C  VS+TFDP+  L+LPL   TT    V +F  +    P    V + K    ++L   
Sbjct: 474 PECRNVSITFDPYNDLTLPLPVNTTWHSKVKIFPQNSP--PCILEVEMKKSASYQELKDY 531

Query: 448 LGNICSLKQSEELKVAEIQNHSI 470
           +     +  S  L   EI NH  
Sbjct: 532 VAEYARI-DSRYLYGCEIFNHQF 553


>gi|195354286|ref|XP_002043629.1| GM19676 [Drosophila sechellia]
 gi|194127797|gb|EDW49840.1| GM19676 [Drosophila sechellia]
          Length = 1760

 Score =  149 bits (375), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 104/273 (38%), Positives = 133/273 (48%), Gaps = 54/273 (19%)

Query: 274  GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV----------- 321
            G TGL NLGNTCFMN+A+Q L +T   A+YF RE +R E+N  N LG             
Sbjct: 739  GATGLHNLGNTCFMNAALQVLFNTQPLAQYFQREMHRFEVNAANKLGTKGQLAMRYAELL 798

Query: 322  ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                                ELL +LLD LHEDLNRV  KPY +
Sbjct: 799  KEVWTATTRSVAPLKLRFCVNKYAPQFAGGGQHDSQELLEWLLDALHEDLNRVMEKPYSE 858

Query: 346  SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
             KD++GRPD+ VA E W+ H ARN SII+D+  GQ KS + C  C   SV FDPF  LSL
Sbjct: 859  LKDSNGRPDKIVAAEAWSQHHARNQSIIIDLFYGQLKSKVSCLGCGHESVRFDPFSLLSL 918

Query: 406  PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
            PL         V V   DGS +P  Y   +    +   L   L  +CSL  +  L V E+
Sbjct: 919  PLPVENYVYFEVLVILLDGS-VPIKYGFRLNSDCKYSHLKHKLSTMCSLPPNLML-VCEL 976

Query: 466  QNHSIQRFL-DDPLISLSTIKDDDHLAAYRVPK 497
             N  I++ L DD  +   + K+   L  Y++P+
Sbjct: 977  WNSQIRQVLNDDEKLRTQSAKE---LYVYQLPE 1006



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 68/122 (55%), Gaps = 2/122 (1%)

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPED 699
              + +DW    L       LE L    +   ++++ + EP+ L  CL AF  EE L  E 
Sbjct: 1429 FTIAIDWDPTALHLRYQSTLERLWVDHETIAISRREQVEPVDLNHCLRAFTSEEKL--EQ 1486

Query: 700  MWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYV 759
             ++C  CK +++A+KKL +W+LP +L++HLKRF+       K +  V+FP  DF+ T Y+
Sbjct: 1487 WYHCSHCKGKKRATKKLQIWKLPPILIVHLKRFNCVNGKWVKSQKVVHFPFDDFDPTPYL 1546

Query: 760  AN 761
            A+
Sbjct: 1547 AS 1548



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 37  RPSGIDNSDLV------NDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGP 90
           RP  IDNS+L+      N  T    G   +    L++  D+ L+P+ +W  L+ WYG   
Sbjct: 490 RPGPIDNSNLITANPFRNVRTLTGEGGHLKRDTPLVQNHDFELVPKSLWKALNRWYGDNL 549

Query: 91  TLARKVISSGLSQTELAVEVYPLRLQLLV 119
            L R+VI    S  EL  E+YPL L++L+
Sbjct: 550 PLPRQVIQPPNSDVEL--ELYPLNLRILL 576



 Score = 42.7 bits (99), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 770  YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDV-KSAAAYVLFYRR 827
            Y LYA+ +H G +  GHY ++        WY ++DS    I++  V   +AAY+LFY R
Sbjct: 1662 YRLYAVVSHSGMLNGGHYISYASNA-TGSWYCYNDSSCREISQKPVIDPSAAYLLFYER 1719


>gi|340508522|gb|EGR34211.1| ubiquitin specific peptidase 8, putative [Ichthyophthirius
           multifiliis]
          Length = 547

 Score =  149 bits (375), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 63/154 (40%), Positives = 104/154 (67%), Gaps = 1/154 (0%)

Query: 674 KARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFS 733
           K+  E ++L  C++ F +EE L   + WYC +CK+ R+++K++DLW+LP +L+IHLKRF 
Sbjct: 264 KSHNEIINLSECIQEFTKEEYLDQNEWWYCFKCKKNRKSTKQIDLWKLPNILIIHLKRFR 323

Query: 734 YSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKL 793
           + +++K K++ FV+FPI +F+L  Y   +   +  +Y+L+A++NH G + SGHYTA+ K 
Sbjct: 324 FDKNIKAKIKNFVDFPIQNFDLQPYTIGRQRDQP-IYDLFAISNHEGNLSSGHYTAYAKN 382

Query: 794 LDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
                WY FDD ++    ++ +KS  AYVLFY +
Sbjct: 383 RANQNWYLFDDCNVQQCLKEQIKSEKAYVLFYSK 416



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/194 (39%), Positives = 98/194 (50%), Gaps = 48/194 (24%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREIN------------------- 313
           GL GL NLGNTC++N+A+QCL +TP    YF  + + +EIN                   
Sbjct: 79  GLVGLYNLGNTCYINAALQCLSNTPPLCDYFLSQLHEKEINPNAFLGSNGQITSQFGKLI 138

Query: 314 ---WQ------------NPLGMV-------------ELLAFLLDGLHEDLNRVKHKPYIK 345
              WQ            N +G               E LAFLLD LHEDLNRV  KPYIK
Sbjct: 139 LDLWQTDQNFIEPIDFINEIGQFAEQFADGTQQDSHEFLAFLLDILHEDLNRVIKKPYIK 198

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
            KD +    EE + E W  ++ RN SIIVD+ QGQ KSTL C VC  VS  F+ F +LS+
Sbjct: 199 EKDYNCEKHEEYSKESWKEYLMRNKSIIVDLFQGQTKSTLKCLVCGSVSHKFEAFQFLSV 258

Query: 406 PLQATTTRTMTVTV 419
           P+ A  +    + +
Sbjct: 259 PVPANKSHNEIINL 272


>gi|195496105|ref|XP_002095552.1| GE19632 [Drosophila yakuba]
 gi|194181653|gb|EDW95264.1| GE19632 [Drosophila yakuba]
          Length = 1758

 Score =  149 bits (375), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 104/273 (38%), Positives = 133/273 (48%), Gaps = 54/273 (19%)

Query: 274  GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV----------- 321
            G TGL NLGNTCFMN+A+Q L +T   A+YF RE +R E+N  N LG             
Sbjct: 739  GATGLHNLGNTCFMNAALQVLFNTQPLAQYFQREMHRFEVNAANKLGTKGQLAMRYAELL 798

Query: 322  ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                                ELL +LLD LHEDLNRV  KPY +
Sbjct: 799  KEVWTATTRSVAPLKLRFCVNKYAPQFAGGGQHDSQELLEWLLDALHEDLNRVMEKPYSE 858

Query: 346  SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
             KD++GRPD+ VA E W+ H ARN SII+D+  GQ KS + C  C   SV FDPF  LSL
Sbjct: 859  LKDSNGRPDKIVAAEAWSQHHARNQSIIIDLFYGQLKSKVSCLGCGHESVRFDPFSLLSL 918

Query: 406  PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
            PL         V V   DGS +P  Y   +    +   L   L  +CSL  +  L V E+
Sbjct: 919  PLPVENYVYFEVLVILLDGS-VPIKYGFRLNSDCKYSHLKHKLSTMCSLPPNLML-VCEL 976

Query: 466  QNHSIQRFL-DDPLISLSTIKDDDHLAAYRVPK 497
             N  I++ L DD  +   + K+   L  Y++P+
Sbjct: 977  WNSQIRQVLADDEKLRTQSAKE---LYVYQLPE 1006



 Score = 84.3 bits (207), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 67/122 (54%), Gaps = 2/122 (1%)

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPED 699
              + +DW    L       LE L    +   ++++ + EP+ L  CL AF  EE L  E 
Sbjct: 1427 FTIAIDWDPTALHLRYQSTLERLWVDHETIAISRREQVEPVDLNHCLRAFTSEEKL--EQ 1484

Query: 700  MWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYV 759
             ++C  CK ++ A+KKL +W+LP +L++HLKRF+       K +  V+FP  DF+ T Y+
Sbjct: 1485 WYHCSHCKGKKPATKKLQIWKLPPILIVHLKRFNCVNGKWVKSQKVVHFPFDDFDPTPYL 1544

Query: 760  AN 761
            A+
Sbjct: 1545 AS 1546



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 37  RPSGIDNSDLV------NDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGP 90
           RP  IDN++L+      N  T    G   +    L++  D+ L+P+ +W  L+ WYG   
Sbjct: 490 RPGPIDNNNLITVNPFRNVRTLTGEGGHLKRDLPLVQNHDFELVPKSLWKALNRWYGDNL 549

Query: 91  TLARKVISSGLSQTELAVEVYPLRLQLLV 119
            L R+VI    S  EL  E+YPL L++L+
Sbjct: 550 PLPRQVIQPPNSDVEL--ELYPLNLRILL 576



 Score = 42.7 bits (99), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 770  YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDV-KSAAAYVLFYRR 827
            Y LYA+ +H G +  GHY ++        WY ++DS    I++  V   +AAY+LFY R
Sbjct: 1660 YRLYAVVSHSGMLNGGHYISYASNA-TGSWYCYNDSSCREISQKPVIDPSAAYLLFYER 1717


>gi|17541074|ref|NP_501035.1| Protein H34C03.2 [Caenorhabditis elegans]
 gi|351050439|emb|CCD65007.1| Protein H34C03.2 [Caenorhabditis elegans]
          Length = 900

 Score =  149 bits (375), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 87/210 (41%), Positives = 108/210 (51%), Gaps = 53/210 (25%)

Query: 264 SGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV- 321
           +GV TR  + G  GL NLGNTCFM SA QCL + P    YF  + Y+ +IN  NPLG   
Sbjct: 264 TGVVTR-TTPGACGLSNLGNTCFMASAFQCLSNMPPLREYFLANTYQNDINEDNPLGTHG 322

Query: 322 ----------------------------------------------ELLAFLLDGLHEDL 335
                                                         EL+A++LDGLHEDL
Sbjct: 323 HLAMAVGELMKGMWSGDYASINPRKFKSIIGQFAPRFNGYSQQDAHELMAYVLDGLHEDL 382

Query: 336 NRVKHKPYIKSKDADGR-PDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVS 394
           NR+K KPYI+  D D + P+ E A + W  +  RNDSIIVD   GQ KSTL+CPVC K+S
Sbjct: 383 NRIKKKPYIEDSDEDAKLPEAEYAAKSWEVYKMRNDSIIVDTLHGQLKSTLICPVCEKIS 442

Query: 395 VTFDPFMYLSLPL---QATTTRTMTVTVFT 421
           + FDPF YLSLPL   +    +T+ V   T
Sbjct: 443 IKFDPFGYLSLPLPPKEQIVKQTVIVMFLT 472



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/148 (41%), Positives = 92/148 (62%), Gaps = 3/148 (2%)

Query: 682 LYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHK 741
           L   L+ F  +E L  +D WYCPQCK+  +A+K+L LW+LPE+L++HLKRF Y++  + K
Sbjct: 700 LQETLDWFTTKEQLGEQDSWYCPQCKKHERATKQLALWKLPEILILHLKRFQYTKWSREK 759

Query: 742 LETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYN 801
           L   V  P+   +LT  VAN N   + +Y+L A++ HYG +  GHYTA      E +W++
Sbjct: 760 LTWEVVIPVRGLDLTDKVANPNHE-KAIYDLIAVSRHYGSLSGGHYTAIGYNDREQKWFD 818

Query: 802 FDDSHISPI--NEDDVKSAAAYVLFYRR 827
           F+DS  +P     +  +S+  Y+L YRR
Sbjct: 819 FNDSSANPTYPPAEPYESSDPYILVYRR 846


>gi|145483917|ref|XP_001427981.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124395064|emb|CAK60583.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1032

 Score =  149 bits (375), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 131/542 (24%), Positives = 232/542 (42%), Gaps = 103/542 (19%)

Query: 1   WWQHWIDYVNQDQPNNTGDG------SSLLEHFNSAGSSASKR----PSGIDNSDLVNDA 50
           W+Q W  YV  + P    D       + L +  N    S ++     P  ID+S L+   
Sbjct: 157 WFQKWRLYVKNEDPIVIEDPIMGLDVTKLRQLLNLNEDSINEETEVIPGPIDSSRLIQIK 216

Query: 51  --TAEDPGAGPEIVDTLL-----EGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQ 103
                DP    + ++ +L     EG D++ +  +V+      YG      +++I     Q
Sbjct: 217 WNLLPDPTQSKQYLNYVLRNDLREGVDFVHVSAKVFKFFEKIYGAFA--VKRLIVKQDEQ 274

Query: 104 TELAVEVYPLRLQLLVMPRG-ECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGH 162
             + V++ P  ++++++    E S++ ++  E + EL R+   I  +  E I  W +   
Sbjct: 275 DRILVDLIPRVVEIIILENQLEESSLSVNGFEQVQELTRKIRVIKGIGNE-IKWWKF--- 330

Query: 163 RKHALMNDMDRTLDDANIQMDQDILVE---VLDNVNGTNCKSSIQDNGFAEKKASSVLVE 219
                         D   QMD   +++    + ++ G +    I+ +         ++ E
Sbjct: 331 -------------KDLQSQMDWMSMIQKGTFIKSIKGKDLDLKIKIDDLNLTTQDILICE 377

Query: 220 PSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGV--TTRGASVGLTG 277
             +        W  +   +     E + S   A         G S +      +  G+TG
Sbjct: 378 IKQ-----GKSWQLTAEINSLQQKEQNVSELYAK-------FGISNIPRCLSDSRRGMTG 425

Query: 278 LLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV--------------- 321
           L NLGNTCFMN+A+QCL +T EF  Y   + + + +N  N LG                 
Sbjct: 426 LQNLGNTCFMNAALQCLSNTYEFTEYMVYNHFAQHLNPNNVLGTKGFLAASYAELMKSMW 485

Query: 322 --------------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDA 349
                                           E L++LLDGLHEDLNRV +KP +   + 
Sbjct: 486 FSNYSSVSAIDLKKVIGKFAPQFYGYGQQDSHEFLSYLLDGLHEDLNRVLNKPIVTDIEI 545

Query: 350 DGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQA 409
               D++ ++++W N+  RN S I ++  GQYKSTLVCP+C+++S TFDPFM LSLP+ +
Sbjct: 546 TNESDQQASEKFWINYTLRNQSKIQELMVGQYKSTLVCPICSRISKTFDPFMSLSLPIPS 605

Query: 410 TTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHS 469
            ++ + ++     D   +P+  ++ +       D+++ L N+ S+   + + +  I+ H 
Sbjct: 606 FSSFSSSLYFIYDDSETMPAKISLQLSSDMTGLDILKQLENLLSISH-KRMNMLLIKEHQ 664

Query: 470 IQ 471
           IQ
Sbjct: 665 IQ 666



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 66/174 (37%), Positives = 102/174 (58%), Gaps = 14/174 (8%)

Query: 666  FKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVL 725
            F       + R     L  CL+AF +EE L   D WYC +CK+  QASKK+++++ P++L
Sbjct: 851  FTTNDTKSQVRKGEYDLDDCLKAFTKEEILGKGDEWYCNRCKKHVQASKKMEIYKAPQIL 910

Query: 726  VIHLKRFSYSR----------SMKHKLETFVNFPIHDFNLTKYVANKNS--SRRQLYELY 773
            +IHLKRF  +R          +   K+ + V FP H+ NL  +V +K +  +   +Y+LY
Sbjct: 911  IIHLKRFKTNRISNLGNFYFSNGTQKISSMVQFP-HELNLNNFVLSKQAGDNLNYIYDLY 969

Query: 774  ALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             + NHYGG+G GHYTA+      N+W +++DS+ +     +V S +AY+LFYRR
Sbjct: 970  GVDNHYGGLGGGHYTAYAFNSVLNKWIDYNDSN-ARTTSSNVVSESAYLLFYRR 1022


>gi|349603765|gb|AEP99510.1| Ubiquitin carboxyl-terminal hydrolase 8-like protein, partial
           [Equus caballus]
          Length = 394

 Score =  149 bits (375), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 67/151 (44%), Positives = 100/151 (66%), Gaps = 1/151 (0%)

Query: 675 ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
           A T   +L  CL  F +EE L   + +YC  C+ RR + KK+++W+LP VL++HLKRFSY
Sbjct: 233 ASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSY 292

Query: 735 SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
               K KL+T V+FP+ + +L++YV    ++ ++ Y L++++NHYGG+  GHYTA+ K  
Sbjct: 293 DGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKK-YNLFSVSNHYGGLDGGHYTAYCKNA 351

Query: 795 DENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
              RW+ FDD  +S I    VKS+AAY+LFY
Sbjct: 352 ARQRWFKFDDHEVSDIAVSSVKSSAAYILFY 382



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/194 (38%), Positives = 97/194 (50%), Gaps = 48/194 (24%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------- 321
           G+   LTGL NLGNTC+MNS +QCL + P  A YF R  Y+ +IN  N LG         
Sbjct: 47  GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEF 106

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELL FL+DGLHEDLN+  ++
Sbjct: 107 GIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNR 166

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
              K ++ D   D + A+  W  H   N+SIIV + QGQ+KST+ C  C+K S TF+ FM
Sbjct: 167 KRHKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFM 226

Query: 402 YLSLPLQATTTRTM 415
           YLSLPL +T+  T+
Sbjct: 227 YLSLPLASTSKCTL 240


>gi|442633506|ref|NP_001262076.1| CG8334, isoform D [Drosophila melanogaster]
 gi|440216036|gb|AGB94769.1| CG8334, isoform D [Drosophila melanogaster]
          Length = 1693

 Score =  149 bits (375), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 104/273 (38%), Positives = 133/273 (48%), Gaps = 54/273 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV----------- 321
           G TGL NLGNTCFMN+A+Q L +T   A+YF RE +R E+N  N LG             
Sbjct: 675 GATGLHNLGNTCFMNAALQVLFNTQPLAQYFQREMHRFEVNAANKLGTKGQLAMRYAELL 734

Query: 322 ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                               ELL +LLD LHEDLNRV  KPY +
Sbjct: 735 KEVWTATTRSVAPLKLRFCVNKYAPQFAGGGQHDSQELLEWLLDALHEDLNRVMEKPYSE 794

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
            KD++GRPD+ VA E W+ H ARN SII+D+  GQ KS + C  C   SV FDPF  LSL
Sbjct: 795 LKDSNGRPDKIVAAEAWSQHHARNQSIIIDLFYGQLKSKVSCLGCGHESVRFDPFSLLSL 854

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
           PL         V V   DGS +P  Y   +    +   L   L  +CSL  +  L V E+
Sbjct: 855 PLPVENYIYFEVLVILLDGS-VPIKYGFRLNSDCKYSHLKHKLSTMCSLPPNLML-VCEL 912

Query: 466 QNHSIQRFL-DDPLISLSTIKDDDHLAAYRVPK 497
            N  I++ L DD  +   + K+   L  Y++P+
Sbjct: 913 WNSQIRQVLNDDEKLRTQSAKE---LYVYQLPE 942



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 67/122 (54%), Gaps = 2/122 (1%)

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPED 699
              + +DW    L       LE L    +   ++++ + EP+ L  CL AF  EE L  E 
Sbjct: 1362 FTIAIDWDPTALHLRYQSTLERLWVDHETIAISRREQVEPVDLNHCLRAFTSEEKL--EQ 1419

Query: 700  MWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYV 759
             ++C  CK ++ A+KKL +W+LP +L++HLKRF+       K +  V+FP  DF+ T Y+
Sbjct: 1420 WYHCSHCKGKKPATKKLQIWKLPPILIVHLKRFNCVNGKWVKSQKVVHFPFDDFDPTPYL 1479

Query: 760  AN 761
            A+
Sbjct: 1480 AS 1481



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 37  RPSGIDNSDLV------NDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGP 90
           RP  IDNS+L+      N  T    G   +    L++  D+ L+P+ +W  L+ WYG   
Sbjct: 426 RPGPIDNSNLITANPFRNVRTLTGEGGHLKRDTPLVQNHDFELVPKSLWKALNRWYGDNL 485

Query: 91  TLARKVISSGLSQTELAVEVYPLRLQLLV 119
            L R+VI    S  EL  E+YPL L++L+
Sbjct: 486 PLPRQVIQPPNSDVEL--ELYPLNLRILL 512



 Score = 42.7 bits (99), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 770  YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDV-KSAAAYVLFYRR 827
            Y LYA+ +H G +  GHY ++        WY ++DS    I++  V   +AAY+LFY R
Sbjct: 1595 YRLYAVVSHSGMLNGGHYISYASNA-TGSWYCYNDSSCREISQKPVIDPSAAYLLFYER 1652


>gi|442633504|ref|NP_001262075.1| CG8334, isoform C [Drosophila melanogaster]
 gi|440216035|gb|AGB94768.1| CG8334, isoform C [Drosophila melanogaster]
          Length = 1696

 Score =  149 bits (375), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 104/273 (38%), Positives = 133/273 (48%), Gaps = 54/273 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV----------- 321
           G TGL NLGNTCFMN+A+Q L +T   A+YF RE +R E+N  N LG             
Sbjct: 675 GATGLHNLGNTCFMNAALQVLFNTQPLAQYFQREMHRFEVNAANKLGTKGQLAMRYAELL 734

Query: 322 ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                               ELL +LLD LHEDLNRV  KPY +
Sbjct: 735 KEVWTATTRSVAPLKLRFCVNKYAPQFAGGGQHDSQELLEWLLDALHEDLNRVMEKPYSE 794

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
            KD++GRPD+ VA E W+ H ARN SII+D+  GQ KS + C  C   SV FDPF  LSL
Sbjct: 795 LKDSNGRPDKIVAAEAWSQHHARNQSIIIDLFYGQLKSKVSCLGCGHESVRFDPFSLLSL 854

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
           PL         V V   DGS +P  Y   +    +   L   L  +CSL  +  L V E+
Sbjct: 855 PLPVENYIYFEVLVILLDGS-VPIKYGFRLNSDCKYSHLKHKLSTMCSLPPNLML-VCEL 912

Query: 466 QNHSIQRFL-DDPLISLSTIKDDDHLAAYRVPK 497
            N  I++ L DD  +   + K+   L  Y++P+
Sbjct: 913 WNSQIRQVLNDDEKLRTQSAKE---LYVYQLPE 942



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 67/122 (54%), Gaps = 2/122 (1%)

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPED 699
              + +DW    L       LE L    +   ++++ + EP+ L  CL AF  EE L  E 
Sbjct: 1365 FTIAIDWDPTALHLRYQSTLERLWVDHETIAISRREQVEPVDLNHCLRAFTSEEKL--EQ 1422

Query: 700  MWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYV 759
             ++C  CK ++ A+KKL +W+LP +L++HLKRF+       K +  V+FP  DF+ T Y+
Sbjct: 1423 WYHCSHCKGKKPATKKLQIWKLPPILIVHLKRFNCVNGKWVKSQKVVHFPFDDFDPTPYL 1482

Query: 760  AN 761
            A+
Sbjct: 1483 AS 1484



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 37  RPSGIDNSDLV------NDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGP 90
           RP  IDNS+L+      N  T    G   +    L++  D+ L+P+ +W  L+ WYG   
Sbjct: 426 RPGPIDNSNLITANPFRNVRTLTGEGGHLKRDTPLVQNHDFELVPKSLWKALNRWYGDNL 485

Query: 91  TLARKVISSGLSQTELAVEVYPLRLQLLV 119
            L R+VI    S  EL  E+YPL L++L+
Sbjct: 486 PLPRQVIQPPNSDVEL--ELYPLNLRILL 512



 Score = 42.7 bits (99), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 770  YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDV-KSAAAYVLFYRR 827
            Y LYA+ +H G +  GHY ++        WY ++DS    I++  V   +AAY+LFY R
Sbjct: 1598 YRLYAVVSHSGMLNGGHYISYASNA-TGSWYCYNDSSCREISQKPVIDPSAAYLLFYER 1655


>gi|440480617|gb|ELQ61272.1| ubiquitin carboxyl-terminal hydrolase 15 [Magnaporthe oryzae P131]
          Length = 2841

 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 65/153 (42%), Positives = 103/153 (67%), Gaps = 1/153 (0%)

Query: 676  RTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYS 735
            R   +SL  CL+ F ++E L  +D WYCP+CKE  +ASKK DLW+ P++LV+HLKRFS S
Sbjct: 2443 RKNGISLDDCLDEFEKQEVLSEQDTWYCPRCKEHVRASKKFDLWKTPDILVVHLKRFSSS 2502

Query: 736  RSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLD 795
               + KL+  V+FPI   +L++ V ++ + + ++++L  + +H+GG+G GHYTA  K   
Sbjct: 2503 GWRRDKLDILVDFPIEGLDLSRRVIDQQTGKEEVFDLIGIDDHWGGLGGGHYTAFAKNFI 2562

Query: 796  ENRWYNFDDSHISP-INEDDVKSAAAYVLFYRR 827
            +  WY ++DS +S   N   + +++AY+LFYRR
Sbjct: 2563 DGEWYEYNDSSVSKQTNLARMVTSSAYLLFYRR 2595



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 84/225 (37%), Positives = 114/225 (50%), Gaps = 64/225 (28%)

Query: 245  ISTSPNLASARDSDNTLGSSGVTTRGAS-------VGLTGLLNLGNTCFMNSAIQCLVHT 297
            ++ +PN A+A  S     + G +TRG +       VG  GL NLGNTC+MNSA+QC+   
Sbjct: 1726 LTVAPNSANA--SGRNSPTPGPSTRGRTKAKSGRTVGCVGLGNLGNTCYMNSALQCVRSV 1783

Query: 298  PEFARYFR-EDYRREINWQNPLG------MV----------------------------- 321
             E  +YF   +  +EIN  NPL       MV                             
Sbjct: 1784 EELTKYFLVGEAEKEINTDNPLAHNGDVAMVYYKLLKDIYQVNAPPSISPRQFKNTIGRY 1843

Query: 322  -------------ELLAFLLDGLHEDLNRVKHKPYIKSKDA------DGRPDEEVADEYW 362
                         E + FLLDGL EDL+RVK KPYI+  D+      + +  +E+AD+ W
Sbjct: 1844 APAFSGYGQQDSQEFVGFLLDGLQEDLSRVKKKPYIEKPDSTDDMINNPQAIKEMADKVW 1903

Query: 363  ANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPL 407
                 R+DS+I D+  G YKSTLVCP+C+K+S+TFDPF  L+LPL
Sbjct: 1904 DITKKRDDSVIADLFTGMYKSTLVCPICHKISITFDPFNNLTLPL 1948


>gi|440467717|gb|ELQ36916.1| ubiquitin carboxyl-terminal hydrolase 15 [Magnaporthe oryzae Y34]
          Length = 2855

 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 65/153 (42%), Positives = 103/153 (67%), Gaps = 1/153 (0%)

Query: 676  RTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYS 735
            R   +SL  CL+ F ++E L  +D WYCP+CKE  +ASKK DLW+ P++LV+HLKRFS S
Sbjct: 2457 RKNGISLDDCLDEFEKQEVLSEQDTWYCPRCKEHVRASKKFDLWKTPDILVVHLKRFSSS 2516

Query: 736  RSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLD 795
               + KL+  V+FPI   +L++ V ++ + + ++++L  + +H+GG+G GHYTA  K   
Sbjct: 2517 GWRRDKLDILVDFPIEGLDLSRRVIDQQTGKEEVFDLIGIDDHWGGLGGGHYTAFAKNFI 2576

Query: 796  ENRWYNFDDSHISP-INEDDVKSAAAYVLFYRR 827
            +  WY ++DS +S   N   + +++AY+LFYRR
Sbjct: 2577 DGEWYEYNDSSVSKQTNLARMVTSSAYLLFYRR 2609



 Score =  133 bits (334), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 84/225 (37%), Positives = 114/225 (50%), Gaps = 64/225 (28%)

Query: 245  ISTSPNLASARDSDNTLGSSGVTTRGAS-------VGLTGLLNLGNTCFMNSAIQCLVHT 297
            ++ +PN A+A  S     + G +TRG +       VG  GL NLGNTC+MNSA+QC+   
Sbjct: 1740 LTVAPNSANA--SGRNSPTPGPSTRGRTKAKSGRTVGCVGLGNLGNTCYMNSALQCVRSV 1797

Query: 298  PEFARYFR-EDYRREINWQNPLG------MV----------------------------- 321
             E  +YF   +  +EIN  NPL       MV                             
Sbjct: 1798 EELTKYFLVGEAEKEINTDNPLAHNGDVAMVYYKLLKDIYQVNAPPSISPRQFKNTIGRY 1857

Query: 322  -------------ELLAFLLDGLHEDLNRVKHKPYIKSKDA------DGRPDEEVADEYW 362
                         E + FLLDGL EDL+RVK KPYI+  D+      + +  +E+AD+ W
Sbjct: 1858 APAFSGYGQQDSQEFVGFLLDGLQEDLSRVKKKPYIEKPDSTDDMINNPQAIKEMADKVW 1917

Query: 363  ANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPL 407
                 R+DS+I D+  G YKSTLVCP+C+K+S+TFDPF  L+LPL
Sbjct: 1918 DITKKRDDSVIADLFTGMYKSTLVCPICHKISITFDPFNNLTLPL 1962


>gi|194874431|ref|XP_001973398.1| GG16065 [Drosophila erecta]
 gi|190655181|gb|EDV52424.1| GG16065 [Drosophila erecta]
          Length = 1760

 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 104/273 (38%), Positives = 133/273 (48%), Gaps = 54/273 (19%)

Query: 274  GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV----------- 321
            G TGL NLGNTCFMN+A+Q L +T   A+YF RE +R E+N  N LG             
Sbjct: 737  GATGLHNLGNTCFMNAALQVLFNTQPLAQYFQREMHRFEVNAANKLGTKGQLAMRYAELL 796

Query: 322  ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                                ELL +LLD LHEDLNRV  KPY +
Sbjct: 797  KEVWTATTRSVAPLKLRFCVNKYAPQFAGGGQHDSQELLEWLLDALHEDLNRVMEKPYSE 856

Query: 346  SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
             KD++GRPD+ VA E W+ H ARN SII+D+  GQ KS + C  C   SV FDPF  LSL
Sbjct: 857  LKDSNGRPDKIVAAEAWSQHHARNQSIIIDLFYGQLKSKVSCLGCGHESVRFDPFSLLSL 916

Query: 406  PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
            PL         V V   DGS +P  Y   +    +   L   L  +CSL  +  L V E+
Sbjct: 917  PLPVENFIYFEVLVILLDGS-VPIKYGFRLNSDCKYSHLKHKLSTMCSLPPNLML-VCEL 974

Query: 466  QNHSIQRFL-DDPLISLSTIKDDDHLAAYRVPK 497
             N  I++ L DD  +   + K+   L  Y++P+
Sbjct: 975  WNSQIRQVLADDEKLRTQSAKE---LYVYQLPE 1004



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 67/122 (54%), Gaps = 2/122 (1%)

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPED 699
              + +DW    L       LE L    +   ++++ + EP+ L  CL AF  EE L  E 
Sbjct: 1429 FTIAIDWDPTALHLRYQSTLERLWVDHETIAISRREQVEPVDLNHCLRAFTSEEKL--EQ 1486

Query: 700  MWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYV 759
             ++C  CK ++ A+KKL +W+LP +L++HLKRF+       K +  V+FP  DF+ T Y+
Sbjct: 1487 WYHCSHCKGKKPATKKLQIWKLPPILIVHLKRFNCVNGKWVKSQKVVHFPFDDFDPTPYL 1546

Query: 760  AN 761
            A+
Sbjct: 1547 AS 1548



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 37  RPSGIDNSDLV------NDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGP 90
           RP  IDNS+L+      N  T    G   +    L++  D+ L+P+ +W  L+ WYG   
Sbjct: 490 RPGPIDNSNLITANPFRNVRTLTGEGGHLKRDTPLVQNHDFELVPKSLWKALNRWYGDNL 549

Query: 91  TLARKVISSGLSQTELAVEVYPLRLQLLV 119
            L R+VI    S  EL  E+YPL L++L+
Sbjct: 550 PLPRQVIQPPNSDVEL--ELYPLNLRILL 576



 Score = 42.7 bits (99), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 770  YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDV-KSAAAYVLFYRR 827
            Y LYA+ +H G +  GHY ++        WY ++DS    I++  V   +AAY+LFY R
Sbjct: 1662 YRLYAVVSHSGMLNGGHYISYASNA-TGSWYCYNDSSCREISQKPVIDPSAAYLLFYER 1719


>gi|442633502|ref|NP_001262074.1| CG8334, isoform B [Drosophila melanogaster]
 gi|440216034|gb|AGB94767.1| CG8334, isoform B [Drosophila melanogaster]
          Length = 1715

 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 104/273 (38%), Positives = 133/273 (48%), Gaps = 54/273 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV----------- 321
           G TGL NLGNTCFMN+A+Q L +T   A+YF RE +R E+N  N LG             
Sbjct: 675 GATGLHNLGNTCFMNAALQVLFNTQPLAQYFQREMHRFEVNAANKLGTKGQLAMRYAELL 734

Query: 322 ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                               ELL +LLD LHEDLNRV  KPY +
Sbjct: 735 KEVWTATTRSVAPLKLRFCVNKYAPQFAGGGQHDSQELLEWLLDALHEDLNRVMEKPYSE 794

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
            KD++GRPD+ VA E W+ H ARN SII+D+  GQ KS + C  C   SV FDPF  LSL
Sbjct: 795 LKDSNGRPDKIVAAEAWSQHHARNQSIIIDLFYGQLKSKVSCLGCGHESVRFDPFSLLSL 854

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
           PL         V V   DGS +P  Y   +    +   L   L  +CSL  +  L V E+
Sbjct: 855 PLPVENYIYFEVLVILLDGS-VPIKYGFRLNSDCKYSHLKHKLSTMCSLPPNLML-VCEL 912

Query: 466 QNHSIQRFL-DDPLISLSTIKDDDHLAAYRVPK 497
            N  I++ L DD  +   + K+   L  Y++P+
Sbjct: 913 WNSQIRQVLNDDEKLRTQSAKE---LYVYQLPE 942



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 67/122 (54%), Gaps = 2/122 (1%)

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPED 699
              + +DW    L       LE L    +   ++++ + EP+ L  CL AF  EE L  E 
Sbjct: 1384 FTIAIDWDPTALHLRYQSTLERLWVDHETIAISRREQVEPVDLNHCLRAFTSEEKL--EQ 1441

Query: 700  MWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYV 759
             ++C  CK ++ A+KKL +W+LP +L++HLKRF+       K +  V+FP  DF+ T Y+
Sbjct: 1442 WYHCSHCKGKKPATKKLQIWKLPPILIVHLKRFNCVNGKWVKSQKVVHFPFDDFDPTPYL 1501

Query: 760  AN 761
            A+
Sbjct: 1502 AS 1503



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 37  RPSGIDNSDLV------NDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGP 90
           RP  IDNS+L+      N  T    G   +    L++  D+ L+P+ +W  L+ WYG   
Sbjct: 426 RPGPIDNSNLITANPFRNVRTLTGEGGHLKRDTPLVQNHDFELVPKSLWKALNRWYGDNL 485

Query: 91  TLARKVISSGLSQTELAVEVYPLRLQLLV 119
            L R+VI    S  EL  E+YPL L++L+
Sbjct: 486 PLPRQVIQPPNSDVEL--ELYPLNLRILL 512



 Score = 42.7 bits (99), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 770  YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDV-KSAAAYVLFYRR 827
            Y LYA+ +H G +  GHY ++        WY ++DS    I++  V   +AAY+LFY R
Sbjct: 1617 YRLYAVVSHSGMLNGGHYISYASNA-TGSWYCYNDSSCREISQKPVIDPSAAYLLFYER 1674


>gi|340506944|gb|EGR32981.1| ubiquitin carboxyl-terminal hydrolase family protein, putative
           [Ichthyophthirius multifiliis]
          Length = 778

 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 82/231 (35%), Positives = 117/231 (50%), Gaps = 50/231 (21%)

Query: 269 RGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------ 321
           + A+ G+ GL+NLGNTCFMNSA+QCL +T    ++F  + Y++EIN  NPLG        
Sbjct: 142 QNAAKGICGLVNLGNTCFMNSALQCLSNTKILTQFFFNKTYKQEINHTNPLGTQGKLAKK 201

Query: 322 -----------------------------------------ELLAFLLDGLHEDLNRVKH 340
                                                    E L+F+LDGLHEDLNRVK+
Sbjct: 202 YSQLLKALWIKKSKIFNPIGIKLVISDLQYMFSGNQQHDSQEFLSFILDGLHEDLNRVKN 261

Query: 341 KPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPF 400
           K      ++DGR D  V+ E+W NHI RN SIIVD+ QGQ+KS + CP C   SVTFDPF
Sbjct: 262 KVNTYPINSDGRNDNIVSFEFWLNHIKRNQSIIVDLMQGQFKSKVTCPQCMYESVTFDPF 321

Query: 401 MYLSLPLQATTTRTMTVTVFTSDGSALPS--TYTVTVPKHGRCRDLIQVLG 449
           +  SLP+     + +++ +  ++         Y     ++ +  +LI  + 
Sbjct: 322 LSCSLPIPYKNIKFISIHILFANNRQFSCEDKYYYDAQQNEKVENLIDFIS 372



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/183 (36%), Positives = 105/183 (57%), Gaps = 32/183 (17%)

Query: 674 KARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFS 733
           K  TE +++Y CL+ F + E L   + WYC  C++ ++A+K++ ++R P++L+ HLKRF 
Sbjct: 596 KQETE-VNIYDCLKLFEQPEKLQKNNEWYCHMCQKFQKATKQMTIYRAPDILIFHLKRFK 654

Query: 734 YSR-SMKHKLETFVNFPIHDFNLTKYVANKNS---------SRRQ--------------- 768
            S  ++K K+   ++FP+ + N+T YV  K S         S+ Q               
Sbjct: 655 TSAGTIKSKITKLIDFPLKNLNMTPYVIEKESPYVNYQNQQSQEQNLFQKSSFTLYDQYD 714

Query: 769 ----LYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLF 824
               +Y+LYA+TNHYG +G GHYTA+ K  +E  WY FDDS++  IN   + S  +Y+LF
Sbjct: 715 KENLIYDLYAVTNHYGSLGFGHYTAYAK--NEGFWYRFDDSNVEKINNSIICSEESYILF 772

Query: 825 YRR 827
           Y R
Sbjct: 773 YER 775


>gi|50292819|ref|XP_448842.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528155|emb|CAG61812.1| unnamed protein product [Candida glabrata]
          Length = 1147

 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/296 (33%), Positives = 131/296 (44%), Gaps = 69/296 (23%)

Query: 273 VGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPL---GMV------- 321
            G+ GL NLGNTC+MNS +QCLVH P+   YF    Y +EIN  NPL   G V       
Sbjct: 286 TGIVGLSNLGNTCYMNSGLQCLVHIPKLRDYFFYGGYEQEINLDNPLGYNGTVATAFGNL 345

Query: 322 ------------------------------------------ELLAFLLDGLHEDLNRVK 339
                                                     E LAFLLD LHEDLNR+ 
Sbjct: 346 IQNLYSYHWNQQQYQSYSPNRFKMTLGQANSMFAGYMQQDSQEFLAFLLDSLHEDLNRIH 405

Query: 340 HKPYIKSKD-------ADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNK 392
            KPYI+          AD    +++A + W  H+ARNDS+I D+  G YKSTL CP C  
Sbjct: 406 DKPYIEKPTLETSEELADENAVKQLAKKTWDAHLARNDSVINDLFVGMYKSTLKCPTCKN 465

Query: 393 VSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNIC 452
           +S+TFDP+  L+LPL  +T     V +F     + P    V +PK     DL   +    
Sbjct: 466 ISITFDPYNDLTLPLPISTVWNKKVKIFPQ--KSPPCILEVELPKSATYNDLKDYVATYS 523

Query: 453 SLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLI 508
           ++  S  L   EI NH   R  + P      I D ++L    +       +F ++I
Sbjct: 524 NIDSS-SLFGCEIFNHQFYRNFESP------ISDSNYLPVQELISETDDIIFYEII 572



 Score =  143 bits (360), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 81/199 (40%), Positives = 120/199 (60%), Gaps = 12/199 (6%)

Query: 637 STSIVVYVDWSQKLLEKYNTH----------FLENLLEVFKNGPVTKKARTEPLSLYTCL 686
           S+SI+V  +W+QK +++  T            LEN  E+         A    ++L +CL
Sbjct: 794 SSSILV-CEWTQKSIDEVFTDDKPIDWEHPALLENK-ELLLAQKQRNSASPNIITLDSCL 851

Query: 687 EAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFV 746
           + F + E L   D WYCP+CKE RQA+K+L+LW  PE+L+IHLKRF   RS   K++  V
Sbjct: 852 KLFSKPEVLGINDSWYCPKCKEHRQATKQLELWNTPEILLIHLKRFENQRSFSDKIDAVV 911

Query: 747 NFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSH 806
           +FPI   ++T YV +       +Y+L+A+ NHYGG+G GHYT+++K   +NRWY FDDS 
Sbjct: 912 DFPIEGLDMTPYVVDSVVEDGCIYDLFAVDNHYGGLGGGHYTSYVKNNIDNRWYYFDDSR 971

Query: 807 ISPINEDDVKSAAAYVLFY 825
           +S  +     + +AY+LFY
Sbjct: 972 VSSTDPKKSVAGSAYLLFY 990


>gi|389625819|ref|XP_003710563.1| ubiquitin specific peptidase 11 [Magnaporthe oryzae 70-15]
 gi|351650092|gb|EHA57951.1| ubiquitin specific peptidase 11 [Magnaporthe oryzae 70-15]
          Length = 1515

 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/153 (41%), Positives = 102/153 (66%), Gaps = 1/153 (0%)

Query: 676  RTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYS 735
            R   +SL  CL+ F ++E L  +D WYCP+CKE  +ASKK DLW+ P++LV+HLKRFS S
Sbjct: 1117 RKNGISLDDCLDEFEKQEVLSEQDTWYCPRCKEHVRASKKFDLWKTPDILVVHLKRFSSS 1176

Query: 736  RSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLD 795
               + KL+  V+FPI   +L++ V ++ + + ++++L  + +H+GG+G GHYTA  K   
Sbjct: 1177 GWRRDKLDILVDFPIEGLDLSRRVIDQQTGKEEVFDLIGIDDHWGGLGGGHYTAFAKNFI 1236

Query: 796  ENRWYNFDDSHISPINE-DDVKSAAAYVLFYRR 827
            +  WY ++DS +S       + +++AY+LFYRR
Sbjct: 1237 DGEWYEYNDSSVSKQTHLARMVTSSAYLLFYRR 1269



 Score =  133 bits (335), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 84/225 (37%), Positives = 114/225 (50%), Gaps = 64/225 (28%)

Query: 245 ISTSPNLASARDSDNTLGSSGVTTRGAS-------VGLTGLLNLGNTCFMNSAIQCLVHT 297
           ++ +PN A+A  S     + G +TRG +       VG  GL NLGNTC+MNSA+QC+   
Sbjct: 403 LTVAPNSANA--SGRNSPTPGPSTRGRTKAKSGRTVGCVGLGNLGNTCYMNSALQCVRSV 460

Query: 298 PEFARYFR-EDYRREINWQNPLG------MV----------------------------- 321
            E  +YF   +  +EIN  NPL       MV                             
Sbjct: 461 EELTKYFLVGEAEKEINTDNPLAHNGDVAMVYYKLLKDIYQVNAPPSISPRQFKNTIGRY 520

Query: 322 -------------ELLAFLLDGLHEDLNRVKHKPYIKSKDA------DGRPDEEVADEYW 362
                        E + FLLDGL EDL+RVK KPYI+  D+      + +  +E+AD+ W
Sbjct: 521 APAFSGYGQQDSQEFVGFLLDGLQEDLSRVKKKPYIEKPDSTDDMINNPQAIKEMADKVW 580

Query: 363 ANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPL 407
                R+DS+I D+  G YKSTLVCP+C+K+S+TFDPF  L+LPL
Sbjct: 581 DITKKRDDSVIADLFTGMYKSTLVCPICHKISITFDPFNNLTLPL 625


>gi|442633508|ref|NP_001262077.1| CG8334, isoform E [Drosophila melanogaster]
 gi|440216037|gb|AGB94770.1| CG8334, isoform E [Drosophila melanogaster]
          Length = 1712

 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 104/273 (38%), Positives = 133/273 (48%), Gaps = 54/273 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV----------- 321
           G TGL NLGNTCFMN+A+Q L +T   A+YF RE +R E+N  N LG             
Sbjct: 675 GATGLHNLGNTCFMNAALQVLFNTQPLAQYFQREMHRFEVNAANKLGTKGQLAMRYAELL 734

Query: 322 ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                               ELL +LLD LHEDLNRV  KPY +
Sbjct: 735 KEVWTATTRSVAPLKLRFCVNKYAPQFAGGGQHDSQELLEWLLDALHEDLNRVMEKPYSE 794

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
            KD++GRPD+ VA E W+ H ARN SII+D+  GQ KS + C  C   SV FDPF  LSL
Sbjct: 795 LKDSNGRPDKIVAAEAWSQHHARNQSIIIDLFYGQLKSKVSCLGCGHESVRFDPFSLLSL 854

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
           PL         V V   DGS +P  Y   +    +   L   L  +CSL  +  L V E+
Sbjct: 855 PLPVENYIYFEVLVILLDGS-VPIKYGFRLNSDCKYSHLKHKLSTMCSLPPNLML-VCEL 912

Query: 466 QNHSIQRFL-DDPLISLSTIKDDDHLAAYRVPK 497
            N  I++ L DD  +   + K+   L  Y++P+
Sbjct: 913 WNSQIRQVLNDDEKLRTQSAKE---LYVYQLPE 942



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 67/122 (54%), Gaps = 2/122 (1%)

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPED 699
              + +DW    L       LE L    +   ++++ + EP+ L  CL AF  EE L  E 
Sbjct: 1381 FTIAIDWDPTALHLRYQSTLERLWVDHETIAISRREQVEPVDLNHCLRAFTSEEKL--EQ 1438

Query: 700  MWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYV 759
             ++C  CK ++ A+KKL +W+LP +L++HLKRF+       K +  V+FP  DF+ T Y+
Sbjct: 1439 WYHCSHCKGKKPATKKLQIWKLPPILIVHLKRFNCVNGKWVKSQKVVHFPFDDFDPTPYL 1498

Query: 760  AN 761
            A+
Sbjct: 1499 AS 1500



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 37  RPSGIDNSDLV------NDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGP 90
           RP  IDNS+L+      N  T    G   +    L++  D+ L+P+ +W  L+ WYG   
Sbjct: 426 RPGPIDNSNLITANPFRNVRTLTGEGGHLKRDTPLVQNHDFELVPKSLWKALNRWYGDNL 485

Query: 91  TLARKVISSGLSQTELAVEVYPLRLQLLV 119
            L R+VI    S  EL  E+YPL L++L+
Sbjct: 486 PLPRQVIQPPNSDVEL--ELYPLNLRILL 512



 Score = 42.7 bits (99), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 770  YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDV-KSAAAYVLFYRR 827
            Y LYA+ +H G +  GHY ++        WY ++DS    I++  V   +AAY+LFY R
Sbjct: 1614 YRLYAVVSHSGMLNGGHYISYASNAT-GSWYCYNDSSCREISQKPVIDPSAAYLLFYER 1671


>gi|24667051|ref|NP_649153.1| CG8334, isoform A [Drosophila melanogaster]
 gi|23093095|gb|AAF49100.3| CG8334, isoform A [Drosophila melanogaster]
          Length = 1736

 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 104/273 (38%), Positives = 133/273 (48%), Gaps = 54/273 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV----------- 321
           G TGL NLGNTCFMN+A+Q L +T   A+YF RE +R E+N  N LG             
Sbjct: 675 GATGLHNLGNTCFMNAALQVLFNTQPLAQYFQREMHRFEVNAANKLGTKGQLAMRYAELL 734

Query: 322 ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                               ELL +LLD LHEDLNRV  KPY +
Sbjct: 735 KEVWTATTRSVAPLKLRFCVNKYAPQFAGGGQHDSQELLEWLLDALHEDLNRVMEKPYSE 794

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
            KD++GRPD+ VA E W+ H ARN SII+D+  GQ KS + C  C   SV FDPF  LSL
Sbjct: 795 LKDSNGRPDKIVAAEAWSQHHARNQSIIIDLFYGQLKSKVSCLGCGHESVRFDPFSLLSL 854

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
           PL         V V   DGS +P  Y   +    +   L   L  +CSL  +  L V E+
Sbjct: 855 PLPVENYIYFEVLVILLDGS-VPIKYGFRLNSDCKYSHLKHKLSTMCSLPPNLML-VCEL 912

Query: 466 QNHSIQRFL-DDPLISLSTIKDDDHLAAYRVPK 497
            N  I++ L DD  +   + K+   L  Y++P+
Sbjct: 913 WNSQIRQVLNDDEKLRTQSAKE---LYVYQLPE 942



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 67/122 (54%), Gaps = 2/122 (1%)

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPED 699
              + +DW    L       LE L    +   ++++ + EP+ L  CL AF  EE L  E 
Sbjct: 1405 FTIAIDWDPTALHLRYQSTLERLWVDHETIAISRREQVEPVDLNHCLRAFTSEEKL--EQ 1462

Query: 700  MWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYV 759
             ++C  CK ++ A+KKL +W+LP +L++HLKRF+       K +  V+FP  DF+ T Y+
Sbjct: 1463 WYHCSHCKGKKPATKKLQIWKLPPILIVHLKRFNCVNGKWVKSQKVVHFPFDDFDPTPYL 1522

Query: 760  AN 761
            A+
Sbjct: 1523 AS 1524



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 37  RPSGIDNSDLV------NDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGP 90
           RP  IDNS+L+      N  T    G   +    L++  D+ L+P+ +W  L+ WYG   
Sbjct: 426 RPGPIDNSNLITANPFRNVRTLTGEGGHLKRDTPLVQNHDFELVPKSLWKALNRWYGDNL 485

Query: 91  TLARKVISSGLSQTELAVEVYPLRLQLLV 119
            L R+VI    S  EL  E+YPL L++L+
Sbjct: 486 PLPRQVIQPPNSDVEL--ELYPLNLRILL 512



 Score = 42.7 bits (99), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 770  YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDV-KSAAAYVLFYRR 827
            Y LYA+ +H G +  GHY ++        WY ++DS    I++  V   +AAY+LFY R
Sbjct: 1638 YRLYAVVSHSGMLNGGHYISYASNA-TGSWYCYNDSSCREISQKPVIDPSAAYLLFYER 1695


>gi|392891842|ref|NP_001254304.1| Protein F07A11.4, isoform a [Caenorhabditis elegans]
 gi|3875534|emb|CAA91317.1| Protein F07A11.4, isoform a [Caenorhabditis elegans]
          Length = 1095

 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 96/291 (32%), Positives = 136/291 (46%), Gaps = 55/291 (18%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLG------------- 319
           G TGL N+GNTCFMN+ +Q LV+  E   YF R  Y+ EIN  NPLG             
Sbjct: 421 GYTGLRNIGNTCFMNAVLQMLVNNIELREYFLRNHYQPEINETNPLGSEGRLAKAFADFM 480

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E L+FLLDGLHED+NRVK KP   
Sbjct: 481 HQMWSGHQKAIEPTQIKNIVAEKASQFANFAQHDAHEFLSFLLDGLHEDVNRVKKKPLTG 540

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + ++ GR D +V++E W NHI RNDSI VD+  GQ KS + CP C++VS+TFDPF+YL +
Sbjct: 541 TVESHGRHDLDVSNEAWKNHILRNDSIFVDLFHGQLKSHVQCPNCDRVSITFDPFVYLPV 600

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
           P       T  +  +  +    P   TV+    G   D + V+     +  +  L+  E 
Sbjct: 601 PFPKNKQST-DLIFWPLENQTKPYKLTVSYSTEGTVADFLSVVSETVRVP-TRNLRACEA 658

Query: 466 QNHSIQRF--LDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQ 514
             H   +   LD   + +S I   D L  ++    ++    + ++H LQ +
Sbjct: 659 ICHKFDKIYSLD---MKVSDIVSPDRLFVFQTHDEMEFNEEIVILHVLQRE 706



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 84/159 (52%), Gaps = 14/159 (8%)

Query: 682  LYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY------- 734
            L   L+ F   E L PE+ WYC  CKE  +A+KKL L+RLP VL+I LKRF Y       
Sbjct: 910  LTQMLDLFSETERLKPEESWYCSTCKENVEATKKLQLYRLPPVLIIQLKRFVYTAFTYQS 969

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNS-SRRQLYELYALTNHYGGMGSGHYTAHIKL 793
            S + + K    V +P+   +++ ++A  +      +Y+L  +  H G    GHY +  +L
Sbjct: 970  SMARRSKDTRSVEYPLESLDMSPFLAETSPHPNSTMYDLTGVVCHSGNSYFGHYISMGRL 1029

Query: 794  LDEN------RWYNFDDSHISPINEDDVKSAAAYVLFYR 826
             D +       W NFDDS ++  +   +++  AY+LFY+
Sbjct: 1030 ADFDSSKTKIEWRNFDDSTVARQSTSTLQTEDAYLLFYK 1068


>gi|298706544|emb|CBJ29514.1| similar to Ubiquitin carboxyl-terminal hydrolase 15 (Ubiquitin
            thiolesterase 15) (Ubiquitin-specific processing protease
            15) (Deubiquitinating enzyme 15) (Unph-2) (Unph4) isoform
            11 [Ectocarpus siliculosus]
          Length = 1972

 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/302 (32%), Positives = 137/302 (45%), Gaps = 86/302 (28%)

Query: 274  GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV----------- 321
            G  GL+N+GNTC++NSA+QCL HTP    Y   D +  E+N  NPLG             
Sbjct: 999  GACGLVNVGNTCYLNSAVQCLSHTPLVRAYLLSDMWAAEVNKYNPLGTQGKLVEDFASLL 1058

Query: 322  ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                                E LA +LD LHED+NRV  KPY+ 
Sbjct: 1059 KSLWSQEYLCIFPSKFKRGLIKYKPQFAGNEQQDSQEFLAEMLDALHEDVNRVIDKPYVA 1118

Query: 346  SKDA-----DGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPF 400
            + D       GR D+++ADE W  H+ RN S+IVD+ QGQ K    C VCNK SVTFDPF
Sbjct: 1119 APDDDDDAESGRSDQDLADEAWDRHVQRNRSVIVDLFQGQLKMECRCTVCNKKSVTFDPF 1178

Query: 401  MYLSLPLQATTTRTMTVTVF---------------------TSDGSA---------LPST 430
            MYLS+P+     + + V +                       SDG           +P  
Sbjct: 1179 MYLSVPIPVRNEKMVAVVMLPRIRTRYLVRSSGLNGEDGAMASDGGGAQFSNPRQLVPVQ 1238

Query: 431  YTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHL 490
            Y + +P+ G   DL + L ++C +  +  + VA +Q + I+   D  L  L+ ++DD  +
Sbjct: 1239 YGMMLPRLGELSDLKRALSDLCGIP-TVSIVVAILQQNQIKVMQDKEL--LTELRDDTWV 1295

Query: 491  AA 492
             A
Sbjct: 1296 VA 1297



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 96/170 (56%), Gaps = 22/170 (12%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            L+L  CL+A+ REE    ED WYC  C+  R+   K+DLW++P+VLVIH+KRF  S   +
Sbjct: 1790 LTLEQCLDAYTREETFEEEDSWYCSSCQAHRRGVMKIDLWKMPDVLVIHMKRFHCSARWR 1849

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRRQ--------LYELYALTNHYGGMGSGHYTAHI 791
             K+ T V FP    +++ +V++ ++ R Q        +Y+L+ + NH GGM  GHYTA+ 
Sbjct: 1850 EKIRTLVLFPHSGLDMSGFVSSNSAHRNQAGGGQAGMVYDLFGVVNHMGGMTGGHYTAYC 1909

Query: 792  KLLD--------------ENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            +                 E+ W NFDD  +  +  D + S AAYVLFYRR
Sbjct: 1910 RSSPCSKDGVEEVTGWGLEHPWLNFDDEFVEEMAPDKIVSDAAYVLFYRR 1959



 Score = 59.3 bits (142), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 58/122 (47%), Gaps = 32/122 (26%)

Query: 21  SSLLEHFNSAG------SSASKRPSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILL 74
           S  +E    AG      ++ ++RP  IDNS L         GA  E+   L  G DY++L
Sbjct: 419 SPAMERLAGAGKERAVPTTLARRPHEIDNSSLQG-------GAEWEVAPNLDLGEDYVML 471

Query: 75  PQEVWNQLHSWYGGGPTLARKV--ISSGL-----------------SQTELAVEVYPLRL 115
           P+ +W+ +  WYGGGP  AR+V  +SS L                 S   LAV++YPL L
Sbjct: 472 PKSLWDVMVDWYGGGPVFARQVVNVSSNLELPEKARGGGDDAEAEPSTARLAVDLYPLAL 531

Query: 116 QL 117
            +
Sbjct: 532 HV 533


>gi|405973454|gb|EKC38169.1| Ubiquitin carboxyl-terminal hydrolase 31 [Crassostrea gigas]
          Length = 1256

 Score =  148 bits (373), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 75/174 (43%), Positives = 105/174 (60%), Gaps = 10/174 (5%)

Query: 664 EVFKNGPVTKKART---EPL--SLYTCLEAFLREEPLVPEDMWYCPQC-KERRQASKKLD 717
           +V    P  KK R    +PL  SL  CL+ F R+E L  +D W CP C K+++ A+K + 
Sbjct: 579 DVIHEDPSVKKVRATQQQPLKVSLEECLQLFTRDEKLSGDDAWECPHCHKQQKGATKTIG 638

Query: 718 LWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA----NKNSSRRQLYELY 773
           LW LP+VLVIHLKRF      + KL T V+FP+ D +++ +V     N       +YEL 
Sbjct: 639 LWSLPDVLVIHLKRFRQVGLRRTKLSTLVDFPVRDLDMSPHVVRRHYNDGDGTEMVYELS 698

Query: 774 ALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            + NHYG M  GHYTA  K   + +WY FDDS + P+ E +VK+++AY+LFY+R
Sbjct: 699 GVLNHYGNMQGGHYTAFCKNPVDGKWYEFDDSKVKPMAEAEVKTSSAYLLFYQR 752



 Score = 85.9 bits (211), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 145/365 (39%), Gaps = 97/365 (26%)

Query: 198 NCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS----KGTSRNHSSEISTSPNLAS 253
           N  S I+++  AEK      VE    S    GGW+ S     GTS    +  STS +L  
Sbjct: 85  NLMSRIKNSSSAEK----TTVE----SGGPKGGWTPSMPRRSGTSNGKQTSDSTSRSL-- 134

Query: 254 ARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-----REDY 308
                  L     +      G  G+ NLGNTCFMN+ IQCL +T  F+RYF     ++D 
Sbjct: 135 -------LNRPTNSVWSVVPGTVGIPNLGNTCFMNAVIQCLSNTDWFSRYFITKQYKDDM 187

Query: 309 RR----------------------EINWQNPLGMV------------------------- 321
           +                       E  W N L  +                         
Sbjct: 188 KSKPFSKKFAIQKSDVAEQLGKLLECLWHNSLSGIGDVSSGFKSIVGKNNSQYKGTEQHD 247

Query: 322 --ELLAFLLDGLHEDL----------NRVKHKPYIK--SKDADGR-------PDEEVADE 360
             E   +LLD L+ED+           RV     +K  S D DG+          E++DE
Sbjct: 248 SQEFFLWLLDRLNEDIFTSYKKKEKTKRVVFPTLVKNSSIDRDGKYRYLPPLSTSEISDE 307

Query: 361 YWANHIARNDS--IIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVT 418
             A  + + +S  ++ ++ Q  Y+S+L CP C K+S TF+ ++ LSLPL   T+R + V 
Sbjct: 308 TAAKEVMQQNSGCMLYNLFQALYRSSLQCPKCQKLSNTFESYLCLSLPLPVRTSRPVYVI 367

Query: 419 VFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDD-P 477
               D   +     +T+  H   R+L   + +   +  S  +     ++    R+ DD P
Sbjct: 368 YVARDIEPMQIKIGLTLNVHDTIRELRDSIASSMKISPSRIVLCQIFEDGFKSRYCDDQP 427

Query: 478 LISLS 482
           L  +S
Sbjct: 428 LTDIS 432


>gi|392891844|ref|NP_001254305.1| Protein F07A11.4, isoform b [Caenorhabditis elegans]
 gi|387912084|emb|CCH63799.1| Protein F07A11.4, isoform b [Caenorhabditis elegans]
          Length = 948

 Score =  148 bits (373), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/291 (32%), Positives = 136/291 (46%), Gaps = 55/291 (18%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLG------------- 319
           G TGL N+GNTCFMN+ +Q LV+  E   YF R  Y+ EIN  NPLG             
Sbjct: 234 GYTGLRNIGNTCFMNAVLQMLVNNIELREYFLRNHYQPEINETNPLGSEGRLAKAFADFM 293

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E L+FLLDGLHED+NRVK KP   
Sbjct: 294 HQMWSGHQKAIEPTQIKNIVAEKASQFANFAQHDAHEFLSFLLDGLHEDVNRVKKKPLTG 353

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           + ++ GR D +V++E W NHI RNDSI VD+  GQ KS + CP C++VS+TFDPF+YL +
Sbjct: 354 TVESHGRHDLDVSNEAWKNHILRNDSIFVDLFHGQLKSHVQCPNCDRVSITFDPFVYLPV 413

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
           P       T  +  +  +    P   TV+    G   D + V+     +  +  L+  E 
Sbjct: 414 PFPKNKQST-DLIFWPLENQTKPYKLTVSYSTEGTVADFLSVVSETVRVP-TRNLRACEA 471

Query: 466 QNHSIQRF--LDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQ 514
             H   +   LD   + +S I   D L  ++    ++    + ++H LQ +
Sbjct: 472 ICHKFDKIYSLD---MKVSDIVSPDRLFVFQTHDEMEFNEEIVILHVLQRE 519



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 84/159 (52%), Gaps = 14/159 (8%)

Query: 682 LYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY------- 734
           L   L+ F   E L PE+ WYC  CKE  +A+KKL L+RLP VL+I LKRF Y       
Sbjct: 763 LTQMLDLFSETERLKPEESWYCSTCKENVEATKKLQLYRLPPVLIIQLKRFVYTAFTYQS 822

Query: 735 SRSMKHKLETFVNFPIHDFNLTKYVANKNS-SRRQLYELYALTNHYGGMGSGHYTAHIKL 793
           S + + K    V +P+   +++ ++A  +      +Y+L  +  H G    GHY +  +L
Sbjct: 823 SMARRSKDTRSVEYPLESLDMSPFLAETSPHPNSTMYDLTGVVCHSGNSYFGHYISMGRL 882

Query: 794 LDEN------RWYNFDDSHISPINEDDVKSAAAYVLFYR 826
            D +       W NFDDS ++  +   +++  AY+LFY+
Sbjct: 883 ADFDSSKTKIEWRNFDDSTVARQSTSTLQTEDAYLLFYK 921


>gi|68064087|ref|XP_674038.1| ubiquitin carboxyl-terminal hydrolase [Plasmodium berghei strain
           ANKA]
 gi|56492316|emb|CAH96632.1| ubiquitin carboxyl-terminal hydrolase 2, putative [Plasmodium
           berghei]
          Length = 611

 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 86/213 (40%), Positives = 110/213 (51%), Gaps = 52/213 (24%)

Query: 247 TSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE 306
           TS N++ + D D    S  ++    + G  GL+NLGNTCF+NS++QCL    +F  YF  
Sbjct: 203 TSNNISGSVDDDIINNSKSISYIFENGGDRGLINLGNTCFLNSSLQCLSKILKFTNYFLS 262

Query: 307 -DYRREINWQNPLGM--------------------------------------------- 320
             +   IN+ NP+G                                              
Sbjct: 263 GSFWDHINYCNPVGQHGRLAKAYYETLLEMWKINKKGKPYAPKALKQAISEKRDEFYGYQ 322

Query: 321 ----VELLAFLLDGLHEDLNRVKHKPYIKSKDADG--RPDEEVADEYWANHIARNDSIIV 374
                ELLAFLLDGLHEDLN ++ KPY + K   G  RPD EVA+  W  H   N+SIIV
Sbjct: 323 QHDSQELLAFLLDGLHEDLNLIQKKPYYEEKLQGGLDRPDIEVAEASWKRHKEINNSIIV 382

Query: 375 DVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPL 407
           D+ QGQY+S L CP CNK+S+TFDPFMYLS+PL
Sbjct: 383 DLFQGQYRSRLQCPQCNKLSITFDPFMYLSIPL 415


>gi|156847043|ref|XP_001646407.1| hypothetical protein Kpol_2001p54 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156117083|gb|EDO18549.1| hypothetical protein Kpol_2001p54 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 1223

 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/348 (30%), Positives = 157/348 (45%), Gaps = 79/348 (22%)

Query: 272 SVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV--------- 321
           S G  GL NLGNTC+MNSA+QCLVH P+   YF  + + +EIN  NPLG           
Sbjct: 338 SRGNIGLNNLGNTCYMNSALQCLVHIPQLRDYFLYKVFEKEINLDNPLGYQGHVARSFAI 397

Query: 322 -----------------------------------------ELLAFLLDGLHEDLNRVKH 340
                                                    E +AFLLDGLHEDLNR+ +
Sbjct: 398 LIQNLFKDELLPSLSYSPTTFKSTVGHFNSMFSGYLQQDSQEFIAFLLDGLHEDLNRITN 457

Query: 341 KPYIKS---KDADGRPDEEV----ADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKV 393
           KP ++    K  D   ++EV    AD+ W +H+ RNDSII D+  G YKSTL CP C+ +
Sbjct: 458 KPVVEKPSLKPEDDVSNQEVIKKLADDTWNSHLLRNDSIITDIFVGLYKSTLHCPECDNL 517

Query: 394 SVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICS 453
           SVTFDP+  L+LPL   T     + +F  +    P    + + K    ++L + + N+  
Sbjct: 518 SVTFDPYNDLTLPLPVDTKWNTKIKLFPQNSP--PCIIEIEMEKTSTYQELKEYIANLVK 575

Query: 454 LKQSEELKVAEIQNHSIQRFLDD--------PLISLSTIKDDDHLAAYRVPKLVKKAVFL 505
           +  S +L   EI NH      D         PL  L  I D D +  Y +       + +
Sbjct: 576 MNPS-DLYGFEIFNHQFYNSFDSDKSNSNYLPLKEL--ISDADDIIFYEIKSSSPADMVV 632

Query: 506 QLIH-RLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQ 552
            +I+ +L+E            + +G P   ++  D++ +   I+  ++
Sbjct: 633 PVINTKLEEGFKNP-------RLFGVPFFVTLKEDELNNPAAIRKVIE 673



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 67/148 (45%), Positives = 97/148 (65%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            ++L  CL  F ++E L   D WYCP CKE RQA+K+L LW  P++L+IHLKRF    S  
Sbjct: 909  ITLDDCLNLFAKKEVLGMNDSWYCPTCKEHRQATKQLQLWSTPDILLIHLKRFENQSSFS 968

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRW 799
             K++  V FPI D +L+ YV N + S+  +Y+L ++ NHYGG+G GHYTA++K   + +W
Sbjct: 969  DKIDDTVYFPITDLDLSPYVVNNDESKSTIYDLVSVDNHYGGLGGGHYTAYVKNFVDKKW 1028

Query: 800  YNFDDSHISPINEDDVKSAAAYVLFYRR 827
            Y FDDS ++    +   + +AY+LFY R
Sbjct: 1029 YYFDDSRVTETVPERSIAGSAYLLFYMR 1056


>gi|328857175|gb|EGG06293.1| ubiquitin C-terminal hydrolase [Melampsora larici-populina 98AG31]
          Length = 1423

 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 71/187 (37%), Positives = 109/187 (58%), Gaps = 32/187 (17%)

Query: 673  KKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF 732
            KK+  + L++  C + F + E L  EDMWYCP+C++  QA K + +W++P++LV+H KRF
Sbjct: 1070 KKSDKKQLTIEDCFKDFSKPERLGEEDMWYCPRCQKHVQAIKTMQIWKVPDILVVHFKRF 1129

Query: 733  SYSRSM---KHKLETFVNFPIHDFNLTKYVANKNSSRR---------------------- 767
            S +R+      K++ FV FPI   +L+  V     +RR                      
Sbjct: 1130 SNARTAYGRSTKVDAFVEFPIEGLDLSDEVEGIKVARRLKAQAVERKLNGHKVQEGMMVE 1189

Query: 768  ------QLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINE-DDVKSAAA 820
                   +Y+L+A+ NH+GG+G GHYTA  K   + +W+NFDDSH+S ++  + VKS+AA
Sbjct: 1190 EEEEESLIYDLFAVDNHFGGLGGGHYTAFAKNATDGKWHNFDDSHVSEVDSAEKVKSSAA 1249

Query: 821  YVLFYRR 827
            Y+LFYRR
Sbjct: 1250 YLLFYRR 1256



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 100/280 (35%), Positives = 127/280 (45%), Gaps = 55/280 (19%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM-------- 320
           G   GL GL NLGNTCFMNSA+QC+ + PE  +YF    Y  E+N  NPLGM        
Sbjct: 502 GMVRGLVGLSNLGNTCFMNSALQCMSNCPELKQYFLSRVYINELNRVNPLGMGGKVAETF 561

Query: 321 ----------------------------------------VELLAFLLDGLHEDLNRVKH 340
                                                    ELL FLLD LHEDLNRV  
Sbjct: 562 GQLIEKLWNSTPHSSIAPREFKSIVGRFNSLFLGYGQQDSQELLTFLLDALHEDLNRVLK 621

Query: 341 KPYIKSKD-ADGRPDEEV---ADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVT 396
           KP+ +  D  DG  D E+   A+  W  +  RNDS+IVD+ QGQYKSTLVCP C KV++ 
Sbjct: 622 KPFDEIPDFKDGDGDLELIKLAETCWNLYRRRNDSVIVDLFQGQYKSTLVCPDCQKVAIK 681

Query: 397 FDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQ 456
           FD  MYL+L L     +  TV     D +         +PK    R + Q +G I     
Sbjct: 682 FDEIMYLTLQLPVNKKQRGTVFFIPLDHTKPRLKVVYELPKDSTIRQVKQHIGKILGY-D 740

Query: 457 SEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVP 496
            E++ V E  +    +   DP   L  I + D +  +  P
Sbjct: 741 PEKMAVIEDWSAKPWKIWQDP-DQLDAILERDVINIFETP 779


>gi|401625179|gb|EJS43200.1| ubp12p [Saccharomyces arboricola H-6]
          Length = 1259

 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 72/154 (46%), Positives = 104/154 (67%), Gaps = 2/154 (1%)

Query: 674  KARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFS 733
            K RT  ++L  CL+ F + E L   D WYCP CKE RQA+K++ LW  P++L+IHLKRF 
Sbjct: 963  KERT--ITLDDCLQLFSKPEILGLNDSWYCPTCKEHRQATKQIQLWNTPDILLIHLKRFE 1020

Query: 734  YSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKL 793
              RS   K++  VNFPI + +L+K+   K+  R  +Y+LYA+ NHYGG+G GHYTA++K 
Sbjct: 1021 SQRSFSDKIDATVNFPITNLDLSKHTVYKDDLRGSIYDLYAVDNHYGGLGGGHYTAYVKN 1080

Query: 794  LDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
              +N+WY FDDS ++    ++  + +AY+LFY R
Sbjct: 1081 FVDNKWYYFDDSRVTETVPENSVAGSAYLLFYIR 1114



 Score =  144 bits (362), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 107/354 (30%), Positives = 157/354 (44%), Gaps = 82/354 (23%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPL---GMV---- 321
           G + G TGL+NLGN+C+MNSA+QCLVH P+   YF  + Y +EIN +NPL   G V    
Sbjct: 359 GPASGTTGLVNLGNSCYMNSALQCLVHVPQLRDYFLYNGYEKEINEENPLGYHGYVAKAF 418

Query: 322 ----------------------------------------------ELLAFLLDGLHEDL 335
                                                         E LAFLLD LHEDL
Sbjct: 419 SNLVQKLFQNKLSTMQRNGAFPPTMFKSTVGHFNSMFSGYMQQDSQEFLAFLLDSLHEDL 478

Query: 336 NRVKHKPYIKSKDADGRPD-------EEVADEYWANHIARNDSIIVDVCQGQYKSTLVCP 388
           NR+  K YI+        D       +++A E W  H+ RN SII D+  G YKSTL CP
Sbjct: 479 NRIMKKEYIEKPSLSADDDVNDWNVIKKLASETWEMHLKRNCSIITDLFVGMYKSTLYCP 538

Query: 389 VCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVL 448
            C  +S+TFDP+  ++LPL   T  + TV +F  +    P    V + K     DL + +
Sbjct: 539 ECKNISITFDPYNDVTLPLPVNTVWSKTVKIFPMNSP--PLLLEVELSKSSMYMDLKEYV 596

Query: 449 GNICSLKQ---------SEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLV 499
           G I  L           S ++ V      S  +FL   L  L  IK  D +  Y +P   
Sbjct: 597 GKISGLDPNTLFGCEVFSNQIYVNYESTESNAQFL--TLQEL--IKPADDVVFYELPVTD 652

Query: 500 KKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQR 553
              + + +++   E+    A        +G P   ++++++  + G I++ +Q+
Sbjct: 653 NNDIIVPVVNTRIEKGYRNAM------LFGVPFFITLTKEETHNPGAIRTKLQK 700


>gi|118364914|ref|XP_001015678.1| Ubiquitin carboxyl-terminal hydrolase family protein [Tetrahymena
            thermophila]
 gi|89297445|gb|EAR95433.1| Ubiquitin carboxyl-terminal hydrolase family protein [Tetrahymena
            thermophila SB210]
          Length = 1196

 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 82/232 (35%), Positives = 136/232 (58%), Gaps = 15/232 (6%)

Query: 611  LQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWS-QKLLEKYNTHFLENLLEVFKNG 669
            L+    +++ + + +  + TI   SS +    +   + Q+ L + N      L E+    
Sbjct: 957  LKFSSNNSLQYQIKINEEITIDFDSSKSLFSEFEQIAKQERLIEINIGLYTQLNEIENIN 1016

Query: 670  PVTKKARTEP-LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIH 728
             VT K +++   +LY CL+ F ++E L   + WYC  CK+ +QASK+++++  P++L+IH
Sbjct: 1017 AVTDKTKSKAEYNLYDCLDLFTQKEVLDKGNEWYCNVCKQHKQASKRMEIFDTPKILIIH 1076

Query: 729  LKRFSYSR----------SMKHKLETFVNFPIHDFNLTKYVAN---KNSSRRQLYELYAL 775
            +KRF  SR          S   KL+ F+NFPI+  NL+KYV +   K ++   LY+L+A+
Sbjct: 1077 IKRFRTSRVSSIGNFYFQSGGQKLDDFINFPINGLNLSKYVLSHQYKQTNEPLLYDLFAV 1136

Query: 776  TNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            +NHYG M  GHYTA+ K    N+W++F+DS +S  +  ++ S AAYVLFY+R
Sbjct: 1137 SNHYGSMSGGHYTAYAKNPIYNKWFDFNDSSVSESSTKEIVSKAAYVLFYKR 1188



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/209 (37%), Positives = 113/209 (54%), Gaps = 49/209 (23%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV----------- 321
           G+ GL NLGNTCFMNSA+QCL +  + + +  +D +  ++N  NPLG             
Sbjct: 571 GVCGLQNLGNTCFMNSALQCLSNVQDLSEFMIQDKFIHDLNKDNPLGTGGYLAASYAELI 630

Query: 322 ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                               ELL++LLDG+HEDLNRVK KP + 
Sbjct: 631 KDMWRGSDSYSSPWDLKKIIGRFAPQFSGYSQQDSHELLSYLLDGIHEDLNRVKKKPLVN 690

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
             ++DG+ D EVA + W N+  RN SIIVD+  GQ+KST+ CP CNK+SVTFDP+M +S+
Sbjct: 691 QIESDGQNDLEVALKSWENYQKRNRSIIVDLMVGQFKSTINCPTCNKISVTFDPYMAISV 750

Query: 406 PLQATTTRTMTVTV-FTSDGSALPSTYTV 433
           P+ +    ++ V + F  + S + + Y +
Sbjct: 751 PVPSIAFLSINVYIQFKDEVSLIQTNYNM 779


>gi|70953824|ref|XP_745989.1| ubiquitin carboxyl-terminal hydrolase 2 [Plasmodium chabaudi
           chabaudi]
 gi|56526478|emb|CAH79598.1| ubiquitin carboxyl-terminal hydrolase 2, putative [Plasmodium
           chabaudi chabaudi]
          Length = 751

 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 90/224 (40%), Positives = 114/224 (50%), Gaps = 53/224 (23%)

Query: 237 TSRNHSSEIS-TSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
           T  N  SE + TS NL+ + D+D       +     + G  GL+NLGNTCF+NS++QCL 
Sbjct: 246 TYDNEYSEYNMTSNNLSGSVDNDTPNNPKSINYIFENGGDRGLINLGNTCFLNSSLQCLS 305

Query: 296 HTPEFARYFRED-YRREINWQNPLGM---------------------------------- 320
              +F  YF    +   IN+ NP+G                                   
Sbjct: 306 KILKFTNYFLSGTFWDHINYCNPVGQHGRLAKAYYETLLEMWKINKKGKPYAPKALKQAI 365

Query: 321 ---------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADG--RPDEEVADEYWA 363
                           ELLAFLLDGLHEDLN ++ KPY + K   G  RPD EVA+  W 
Sbjct: 366 SEKRDEFYGYQQHDSQELLAFLLDGLHEDLNLIQKKPYYEEKLQGGLDRPDIEVAEASWK 425

Query: 364 NHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPL 407
            H   N+SIIVD+ QGQY+S L CP CNK+S+TFDPFMYLS+PL
Sbjct: 426 RHKEINNSIIVDLFQGQYRSRLQCPQCNKLSITFDPFMYLSIPL 469


>gi|365760061|gb|EHN01808.1| Ubp12p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
          Length = 1104

 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 69/153 (45%), Positives = 104/153 (67%)

Query: 675 ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
           A+   ++L  CL+ F + E L   D WYCP CKE RQA+K++ LW  P++L++HLKRF  
Sbjct: 808 AKERIITLDDCLQLFSKPEILGLNDSWYCPTCKEHRQATKQIQLWNTPDILLVHLKRFES 867

Query: 735 SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
            RS   K++  VNFP+   +L+K+V +K+  R  +Y+LYA+ NHYGG+G GHYTA++K  
Sbjct: 868 QRSFSDKIDATVNFPVTALDLSKHVVHKDDPRGSIYDLYAVDNHYGGLGGGHYTAYVKNF 927

Query: 795 DENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            +++WY FDDS ++    ++  S +AY+LFY R
Sbjct: 928 ADSKWYYFDDSRVTETVPENSISGSAYLLFYIR 960



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 104/348 (29%), Positives = 151/348 (43%), Gaps = 78/348 (22%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPL---GMV-------- 321
           G TGL+NLGNTC+MNSA+QCLVH PE   YF  + Y  EIN +NPL   G V        
Sbjct: 211 GTTGLVNLGNTCYMNSALQCLVHIPELRDYFLYNGYESEINEENPLGYHGYVARAFSDLV 270

Query: 322 ------------------------------------------ELLAFLLDGLHEDLNRVK 339
                                                     E LAFLLD LHEDLNR+ 
Sbjct: 271 QKLFHNKLSSMQRNAAFPPSMFKSTVGHFNSMFSGYMQQDSQEFLAFLLDSLHEDLNRII 330

Query: 340 HKPYIKSKDADGRPDEEV---------ADEYWANHIARNDSIIVDVCQGQYKSTLVCPVC 390
            K YI+       PD++V         AD+ W  H+ RN S+I D+  G YKSTL CP C
Sbjct: 331 KKAYIEKPSL--SPDDDVNDWNVVKKLADDTWEMHLKRNCSVITDLFVGLYKSTLYCPEC 388

Query: 391 NKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGN 450
             VS+TFDP+  ++LPL   T  + TV +F  +    P    V + K     DL   +G 
Sbjct: 389 KNVSITFDPYNDVTLPLPVDTVWSKTVKIFPMNSP--PLLLEVELSKSSTYMDLKNYVGK 446

Query: 451 ICSLKQSEELKVAEIQNHSIQRF----LDDPLISLST-IKDDDHLAAYRVPKLVKKAVFL 505
              L  +         N     +     +   ++L   IK  D +  Y +P      + +
Sbjct: 447 TSGLDPNTLFGCEIFSNQIYLNYEATESNAQFLTLQELIKPADDVIFYELPVTDNNEIIV 506

Query: 506 QLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQR 553
            +++  +E+    A        +G P   ++S+++  + G ++  +Q+
Sbjct: 507 AVVNTRKEKGYRNAM------LFGVPFFITLSKEERSNPGAVRMKLQK 548


>gi|448510992|ref|XP_003866441.1| Ubp12 protein [Candida orthopsilosis Co 90-125]
 gi|380350779|emb|CCG21001.1| Ubp12 protein [Candida orthopsilosis Co 90-125]
          Length = 1293

 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 118/385 (30%), Positives = 174/385 (45%), Gaps = 91/385 (23%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM------------ 320
           G  GL NLGNTC+MNSA+QCL+H PE  +YF  + Y++E+N  NPLG             
Sbjct: 330 GHMGLSNLGNTCYMNSALQCLLHVPEINQYFFHNIYQKELNVDNPLGYNGDVANAFGSLL 389

Query: 321 -------------------------------------VELLAFLLDGLHEDLNRVKHKPY 343
                                                 ELL++LLD LHEDLNR++ KPY
Sbjct: 390 KQAFDPAKTSSSMSPRDFKYTIGRYSSMFSGYLQQDSQELLSWLLDALHEDLNRIQKKPY 449

Query: 344 IKS---KDADGRPDEEVA---DEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTF 397
            +    KD +    E +A   +  W  H  RNDS+I D+  G Y+S LVCP C K S+TF
Sbjct: 450 CEKPELKDDEVDDKEAIARLSETCWNQHKQRNDSVITDLFTGLYESILVCPDCGKTSITF 509

Query: 398 DPFMYLSLPLQATTTRTMTVTVFTSDGSALPS---TYTVTVPKHGRCRDLIQVLGNICSL 454
           DPF  L+LPL        T T+    G  LP+      V +       DL+  L N  S+
Sbjct: 510 DPFNDLTLPLPINKKWYHTFTIVDFSGK-LPNRIMKLEVELKTTSNYDDLVNYLSNFLSV 568

Query: 455 KQSEELKVAEIQNHSI------QRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLI 508
             + +L + E+  H I       R  +  L     IKD D +  Y +P   +  V + + 
Sbjct: 569 A-TGDLFLYEVFQHGIYADFQKNRIKNKFLPITEIIKDGDDVVVYIIPHDSEIDVIIPVF 627

Query: 509 HRLQEQEPGAAQTTSQWKAY-GTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHA 567
           + ++ ++     T+ + + Y G PL  ++++D + S G I+   Q++L            
Sbjct: 628 NVVENED-----TSYRMENYFGVPLFITLTKDQLNSFGCIR---QKLL------------ 667

Query: 568 DSFDPSSMVTTVDPSGEAHSNSSSN 592
              + +S++T VD  GE      SN
Sbjct: 668 ---EAASILTYVDVVGEYEKIKQSN 689



 Score =  135 bits (340), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 126/222 (56%), Gaps = 11/222 (4%)

Query: 617  SNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQ----KLLEKYNTHFLENLLEVFKNGPVT 672
            SN+   L    D+ +     S + V+  DW +    KL    +    E++ E+       
Sbjct: 924  SNINSPLETNFDEEVHTTLVSRNSVLLCDWDKEVYLKLFGDSSLTSWESIPELKNQQLAE 983

Query: 673  KKARTE-----PLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVI 727
             KAR E      ++L  CL++F   E L   D+WYCP C + ++A+K + +W   ++L I
Sbjct: 984  NKARFERQRKSKVTLADCLKSFSTPEVLGEHDLWYCPSCNDHKRATKSIQIWSTGDILTI 1043

Query: 728  HLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQ-LYELYALTNHYGGMGSGH 786
            HLKRF  +R+   K++  V+FPI   ++  YVAN     +  +Y+L A+ NHYGG+G GH
Sbjct: 1044 HLKRFHSARAFSDKIDIVVDFPIEGLDIAPYVANPTLQEKDCIYDLIAVDNHYGGLGGGH 1103

Query: 787  YTAHIKLLDENRWYNFDDSHISPINE-DDVKSAAAYVLFYRR 827
            YTA +K   +++WY F+DS ++ IN  +++ S+AAY+LFYRR
Sbjct: 1104 YTASVKNFKDDKWYYFNDSRVTEINNPEELVSSAAYLLFYRR 1145


>gi|82539196|ref|XP_724005.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
 gi|23478499|gb|EAA15570.1| similar to ubiquitin specific protease 11-related [Plasmodium
           yoelii yoelii]
          Length = 1098

 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 89/224 (39%), Positives = 114/224 (50%), Gaps = 53/224 (23%)

Query: 237 TSRNHSSEIS-TSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV 295
           T  N  SE + TS N++ + D D       ++    + G  GL+NLGNTCF+NS++QCL 
Sbjct: 125 TYDNEYSEYNMTSNNISGSVDDDTINNPKSISYIFENGGDRGLINLGNTCFLNSSLQCLS 184

Query: 296 HTPEFARYFRED-YRREINWQNPLGM---------------------------------- 320
              +F  YF    +   IN+ NP+G                                   
Sbjct: 185 KILKFTNYFLSGTFWDHINYCNPVGQHGRLAKAYYETLLEMWKINKKGKPYAPKVLKQAI 244

Query: 321 ---------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADG--RPDEEVADEYWA 363
                           ELLAFLLDGLHEDLN ++ KPY + K   G  RPD EVA+  W 
Sbjct: 245 SEKRDEFYGYQQHDSQELLAFLLDGLHEDLNLIQKKPYYEEKLQGGLDRPDIEVAEASWK 304

Query: 364 NHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPL 407
            H   N+SIIVD+ QGQY+S L CP CNK+S+TFDPFMYLS+PL
Sbjct: 305 RHKEINNSIIVDLFQGQYRSRLQCPQCNKLSITFDPFMYLSIPL 348



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 64/161 (39%), Positives = 99/161 (61%), Gaps = 14/161 (8%)

Query: 678  EPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYS-R 736
            E  S+ TCL+ F  EE L  ++ WYC  CK   QA KKLDL+R+P VL++HLKRF+ S R
Sbjct: 907  EKYSVDTCLKLFSEEEHLDEDNTWYCSNCKLHVQAYKKLDLFRMPIVLILHLKRFNNSNR 966

Query: 737  SMKHKLETFVNFPIHD---FNLTKYVANKNSSRRQ--------LYELYALTNHYGGMGSG 785
             ++ K++++V +P  +    ++T Y+        +        LYEL  +  H GG+G G
Sbjct: 967  WLRTKIDSYVYYPHKENEYLDMTPYILPDGLKHMKSFDPNYLPLYELIGVNCHTGGLGGG 1026

Query: 786  HYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYR 826
            HY A++KL    +WYNF+D++++ INE  + +  AY+LFY+
Sbjct: 1027 HYFAYVKL--NGQWYNFNDTYVTTINESQINTKNAYLLFYQ 1065


>gi|403361735|gb|EJY80573.1| Ubiquitin carboxyl-terminal hydrolase [Oxytricha trifallax]
          Length = 1076

 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 85/237 (35%), Positives = 133/237 (56%), Gaps = 17/237 (7%)

Query: 601  SKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLE 660
            S+ +TL +  +++  ESN+ F    EG K          ++  + W+ K+ +++   F  
Sbjct: 815  SRKMTLQDFMMKIGIESNISF--YTEGYK-----RGKNDVIFEIVWNPKIEKQFFDAFQT 867

Query: 661  NLL---EVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLD 717
             +    +   + P T+K  +  ++L  CLE F R E L  ++MWYC +CKE  QA+K L 
Sbjct: 868  AVSFPGQKQLSQPTTQKDESSAITLQDCLEEFERPEMLDQDNMWYCNKCKEHVQATKSLK 927

Query: 718  LWRLPEVLVIHLKRFSYSRSMKH------KLETFVNFPIHDFNLTKYVA-NKNSSRRQLY 770
            L+RLP VLVI+LKRF + + M        KL+T V+FP+   +L  ++  N    +  +Y
Sbjct: 928  LFRLPLVLVINLKRFKHGKRMSMYGGGNGKLQTLVDFPLQGLDLQPHIIRNGPDGQEYIY 987

Query: 771  ELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            +L+ ++NH+GG G GHYTA+     EN+WY+ DDS     N + V S +AY LFYRR
Sbjct: 988  DLFGVSNHFGGCGGGHYTAYALNWMENQWYSLDDSSCQKTNPNRVVSDSAYNLFYRR 1044



 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/208 (37%), Positives = 105/208 (50%), Gaps = 49/208 (23%)

Query: 249 PNLASARDSDNTLGSSGVT-TRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-RE 306
           P+ ++  D++   G  G   +  A  G  GL NLGNTC+MNS++QCL +  E  RYF  E
Sbjct: 344 PSCSAMADAELQKGVQGFQRSSRARDGKVGLGNLGNTCYMNSSLQCLSNCYELTRYFLDE 403

Query: 307 DYRREINWQNPLGMV--------------------------------------------- 321
            ++ ++N  NPLG                                               
Sbjct: 404 RFKEDLNVDNPLGTSGRLVQAYAKLLNEMWNQEDSVVRPHMFKRILGEYAQQFQGFGQHD 463

Query: 322 --ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQG 379
             E +  +LD L EDL R   KPY++  +A  R D+  A E W  H+ RN+S+IVD+  G
Sbjct: 464 SQECINSILDLLSEDLYRKPKKPYVEQTEAGDRSDDVAAQEAWLKHLVRNESVIVDLFHG 523

Query: 380 QYKSTLVCPVCNKVSVTFDPFMYLSLPL 407
           QYKSTLVC +C++VSVTFDPFM LSLP+
Sbjct: 524 QYKSTLVCSICSRVSVTFDPFMTLSLPI 551


>gi|148234990|ref|NP_001080551.1| ubiquitin specific peptidase 8 [Xenopus laevis]
 gi|27697056|gb|AAH43910.1| Usp8-prov protein [Xenopus laevis]
          Length = 1063

 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 64/149 (42%), Positives = 100/149 (67%), Gaps = 2/149 (1%)

Query: 677  TEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSR 736
            T   SL  C++AF +EE L   + + C  CK +R A+KK+++W+LP +L++HLKRFS+  
Sbjct: 905  TSKCSLKDCIKAFAKEEKLTDSNRFDCSNCKTQRVATKKIEIWKLPPILLVHLKRFSFEG 964

Query: 737  SMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDE 796
              + KL+ +V+FP+   +L+ YV    SS++  Y L+ ++NHYGG+  GHYTA+ K   +
Sbjct: 965  RWRQKLQAYVDFPLESLDLSPYVIGPKSSKK--YNLFGVSNHYGGLDGGHYTAYCKNALK 1022

Query: 797  NRWYNFDDSHISPINEDDVKSAAAYVLFY 825
             RW+ FDD  +S I+   VK++AAY+LFY
Sbjct: 1023 QRWFKFDDHDVSDISVSSVKTSAAYMLFY 1051



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/190 (39%), Positives = 96/190 (50%), Gaps = 48/190 (25%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV------- 321
           GA   LTGL NLGNTC+MNS +QCL +TP  A YF ++ Y+ +IN  N LG         
Sbjct: 717 GAGPALTGLRNLGNTCYMNSILQCLCNTPHLAEYFNKNCYQADINRSNLLGHKGEVAEEF 776

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELL FL+DGLHEDLN+  ++
Sbjct: 777 GCIMKALWTGQYKCISPKDFKITIGKINEQFAGYSHQDSQELLLFLMDGLHEDLNKADNR 836

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
              K ++ D   D + AD  W  H   N+SIIV + QGQ+KST+ C  C K S TF+ FM
Sbjct: 837 KRQKEENNDHLSDSQAADSAWYKHKQLNESIIVSLFQGQFKSTVQCLTCQKKSRTFEAFM 896

Query: 402 YLSLPLQATT 411
           YLSLPL +T+
Sbjct: 897 YLSLPLPSTS 906


>gi|348669636|gb|EGZ09458.1| hypothetical protein PHYSODRAFT_318199 [Phytophthora sojae]
          Length = 263

 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 70/158 (44%), Positives = 101/158 (63%), Gaps = 8/158 (5%)

Query: 678 EPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRS 737
           E +SL  C   F++ E L   ++WYC  CKE RQA K +++WRLP+VLV+ LKRF Y   
Sbjct: 86  EGISLDDCFRNFVKPETLDQSNLWYCSTCKEHRQARKTMEMWRLPDVLVLSLKRFEYRNE 145

Query: 738 -MKHKLETFVNFPIHDFNLTKYVANKNSSRRQL-YELYALTNHYGGMGSGHYTAHIKLLD 795
            ++ KL+ +V+FP+   +++ Y   K+S +  L Y+L+A++NHYG MG GHYTA  K   
Sbjct: 146 ILRDKLDVYVDFPLEGLDMSPYCLEKSSEKDHLSYDLFAVSNHYGSMGFGHYTAFAKSWK 205

Query: 796 ENR------WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           +        WY+FDDS ++P     VKS AAY+LFY+R
Sbjct: 206 DGDGEMFPGWYSFDDSLVTPAMPSQVKSNAAYILFYKR 243


>gi|347840834|emb|CCD55406.1| similar to ubiquitin carboxyl-terminal hydrolase [Botryotinia
            fuckeliana]
          Length = 1694

 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 138/498 (27%), Positives = 208/498 (41%), Gaps = 125/498 (25%)

Query: 176  DDANIQMDQDILVEVLDN-VNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS 234
            DD  I +D+  LVE  D  V+ T    + + NG   K  SS++V              +S
Sbjct: 540  DDQAIVIDE--LVEGKDGFVSNTRASPNGKANGVGRKNNSSIIV--------------SS 583

Query: 235  KGTSRNHSSEISTSPNLAS-ARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQC 293
            +  S  +S   S+S NL S  R S N          G + G  GL NLGNTC+MNSA+QC
Sbjct: 584  QNNSGRNSPAPSSSYNLRSFNRKSKN----------GRTPGTVGLGNLGNTCYMNSALQC 633

Query: 294  LVHTPEFARYFRED-YRREINWQNPLG--------------------------------- 319
            +    E  +YF  D Y+ E+N  NPLG                                 
Sbjct: 634  VRSVEELTKYFVHDVYKAELNSDNPLGHGGCVAKAYADLLKEIYKEPAPVSVQPRNFKNT 693

Query: 320  ---------------MVELLAFLLDGLHEDLNRVKHKPYIKSKDAD----GRPD--EEVA 358
                             E + FLLDGL EDL+RV+ KPYI+  D+     G P+   E+A
Sbjct: 694  VSRFATQFSGYGQQDSQEFIGFLLDGLQEDLSRVRKKPYIEKPDSTDEMIGNPEAIREMA 753

Query: 359  DEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPF--MYLSLPLQATTTRTMT 416
             + W     R+DS+I D+  G YKSTLVCP C+KVS+TFDPF  M L LP+++  TR + 
Sbjct: 754  TKVWDITKQRDDSVIADLFTGMYKSTLVCPHCDKVSITFDPFNNMTLQLPIESIWTRIVN 813

Query: 417  VTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDD 476
                       P +  V   KH     L +++     +  +E +   E+      ++  D
Sbjct: 814  FFPLNDK----PVSVVVETDKHASVGTLKRIISQKVGVP-AERIFSCEVYEGKFYKWYLD 868

Query: 477  PLISLSTIKDDDHLAAY--------RVPK------------------------LVKKAVF 504
              ++   I+    +A +         +PK                           + + 
Sbjct: 869  HEVASEAIEGAKDIANFYELETTPTNLPKDSGNKHTGFGKNNSTDNENLPWDSPEAEKLL 928

Query: 505  LQLIHRLQEQEP-GAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKKES 563
            + + HR  ++E  G   T+  W+   TP    ++R++  S   I+  +   +S F    S
Sbjct: 929  VPVFHRRPKRERFGKKPTSGSWELTLTPHFIVVNRNEARSEEAIKRKLLEKVSTFTTWPS 988

Query: 564  LMHADSFDPSSMVTTVDP 581
            +   D +DPSS   ++DP
Sbjct: 989  I--NDEYDPSSASESIDP 1004



 Score =  140 bits (352), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 68/153 (44%), Positives = 101/153 (66%), Gaps = 1/153 (0%)

Query: 676  RTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYS 735
            R + ++L  CL+ F +EE L   D WYCP+CKE R+ASKK ++WR P++L++HLKRFS S
Sbjct: 1292 RKQGITLEDCLDEFGKEEILSEMDTWYCPRCKEHRRASKKFEIWRTPDILIMHLKRFSAS 1351

Query: 736  RSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLD 795
               ++KL   V+FPI   +L+  V      + ++Y+L A+ +HYGGMG GHYTA  K   
Sbjct: 1352 GFQRNKLVDHVDFPIEGLDLSSRVIESQDGKEEIYDLIAVDDHYGGMGGGHYTAFAKNFS 1411

Query: 796  ENRWYNFDDSHISPI-NEDDVKSAAAYVLFYRR 827
            + +WY ++DS +S   N + + +  AY+LFYRR
Sbjct: 1412 DQKWYEYNDSSVSETKNLNSMVTKNAYLLFYRR 1444


>gi|47225944|emb|CAG04318.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 850

 Score =  146 bits (368), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 116/221 (52%), Gaps = 31/221 (14%)

Query: 634 PSSSTSIVVYVDWSQK----LLEKYNTHFLENLLEVFKNGPVTKKARTEP--LSLYTCLE 687
           P     + + V+W ++    L ++    ++ +   V +     K+   +P   SL  C +
Sbjct: 104 PGGPPHVKIVVEWDKETKDYLFKRTEDEYIPDAESVRQ----VKEQHQQPQTCSLAQCFQ 159

Query: 688 AFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVN 747
            + +EE L P+D W CP CK+ +Q S KL LW LP++L++HLKRF      + K++  V 
Sbjct: 160 LYTKEEQLAPDDAWRCPHCKQLQQGSIKLSLWTLPDILILHLKRFRQDGDRRMKIQNMVK 219

Query: 748 FPIHDFNLTKYVANKNSS-----------RRQ----------LYELYALTNHYGGMGSGH 786
           FP+   ++  ++  ++ S           RR           LY+LYA+ NH+G M  GH
Sbjct: 220 FPLIGMDMAPHMVKRSQSSWSLPSHWSPWRRPYGMSRDPEDYLYDLYAVCNHHGTMQGGH 279

Query: 787 YTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           YTAH K   + +WY FDDS + PI+EDDV     Y+LFY+R
Sbjct: 280 YTAHCKNSIDGQWYCFDDSDVHPISEDDVCKQTGYILFYQR 320


>gi|195591649|ref|XP_002085551.1| GD14834 [Drosophila simulans]
 gi|194197560|gb|EDX11136.1| GD14834 [Drosophila simulans]
          Length = 1760

 Score =  146 bits (368), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 103/273 (37%), Positives = 132/273 (48%), Gaps = 54/273 (19%)

Query: 274  GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV----------- 321
            G TGL NLGNTCFMN+A+Q L +T   A+YF RE +R E+N  N LG             
Sbjct: 739  GATGLHNLGNTCFMNAALQVLFNTQPLAQYFQREMHRFEVNAANKLGTKGQLAMRYAELL 798

Query: 322  ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                                ELL +LLD LHEDLN V  KPY +
Sbjct: 799  KEVWTATTRSVAPLKLRFCVNKYAPQFAGGGQHDSQELLEWLLDALHEDLNGVMEKPYSE 858

Query: 346  SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
             KD++GRPD+ VA E W+ H ARN SII+D+  GQ KS + C  C   SV FDPF  LSL
Sbjct: 859  LKDSNGRPDKIVAAEAWSQHHARNQSIIIDLFYGQLKSKVSCLGCGHESVRFDPFSLLSL 918

Query: 406  PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
            PL         V V   DGS +P  Y   +    +   L   L  +CSL  +  L V E+
Sbjct: 919  PLPVENYVYFEVLVILLDGS-VPIKYGFRLNSDCKYSHLKHKLSTMCSLPPNLML-VCEL 976

Query: 466  QNHSIQRFL-DDPLISLSTIKDDDHLAAYRVPK 497
             N  I++ L DD  +   + K+   L  Y++P+
Sbjct: 977  WNSQIRQVLNDDEKLRTQSAKE---LYVYQLPE 1006



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 68/122 (55%), Gaps = 2/122 (1%)

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPED 699
              + +DW    L       LE L    +   ++++ + EP+ L  CL AF  EE L  E 
Sbjct: 1429 FTIAIDWDPTALHLRYQSTLERLWVDHETIAISRREQVEPVDLNHCLRAFTSEEKL--EQ 1486

Query: 700  MWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYV 759
             ++C  CK +++A+KKL +W+LP +L++HLKRF+       K +  V+FP  DF+ T Y+
Sbjct: 1487 WYHCSHCKGKKRATKKLQIWKLPPILIVHLKRFNCVNGKWVKSQKVVHFPFDDFDPTPYM 1546

Query: 760  AN 761
            A+
Sbjct: 1547 AS 1548



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 37  RPSGIDNSDLV------NDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGP 90
           RP  IDNS+L+      N  T    G   +    L++  D+ L+P+ +W  L+ WYG   
Sbjct: 490 RPGPIDNSNLITANPFRNVRTLTGEGGHLKRDTPLVQNHDFELVPKSLWKALNRWYGDNL 549

Query: 91  TLARKVISSGLSQTELAVEVYPLRLQLLV 119
            L R+VI    S  EL  E+YPL L++L+
Sbjct: 550 PLPRQVIQPPNSDVEL--ELYPLNLRILL 576



 Score = 42.7 bits (99), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 770  YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDV-KSAAAYVLFYRR 827
            Y LYA+ +H G +  GHY ++        WY ++DS    I++  V   +AAY+LFY R
Sbjct: 1662 YRLYAVVSHSGMLNGGHYISYASNA-TGSWYCYNDSSCREISQKPVIDPSAAYLLFYER 1719


>gi|326675880|ref|XP_693811.5| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 [Danio rerio]
          Length = 1067

 Score =  145 bits (367), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 64/145 (44%), Positives = 96/145 (66%), Gaps = 1/145 (0%)

Query: 681  SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKH 740
            SL  CL+ F +EE L   + +YC  CK  R A K++ +W+LP +L++HLKRF Y    + 
Sbjct: 921  SLQDCLKLFHKEERLTDGNRFYCRHCKTHRDAIKRMQIWKLPPILLVHLKRFKYEGRWRE 980

Query: 741  KLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWY 800
            KL+T V+FP+ + +L++YV    ++ ++ Y LYA++NHYGGM  GHYTA+ K   + RW+
Sbjct: 981  KLQTLVDFPLDNLDLSQYVIGPKNNLKK-YNLYAVSNHYGGMDGGHYTAYCKNPMKQRWF 1039

Query: 801  NFDDSHISPINEDDVKSAAAYVLFY 825
             FDD  +S I+   V+S AAY+ FY
Sbjct: 1040 KFDDHEVSEISSSTVRSPAAYIFFY 1064



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/213 (35%), Positives = 100/213 (46%), Gaps = 55/213 (25%)

Query: 247 TSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-R 305
           T P+ A  R+ +   G  G         LTGL NLGNTC+MNS +QCL +T   A YF R
Sbjct: 713 TRPSAAKIRNLNPVFGGQGPL-------LTGLRNLGNTCYMNSILQCLCNTVAMADYFNR 765

Query: 306 EDYRREINWQNPLG----------------------MV---------------------- 321
             Y+ +IN  N LG                      M+                      
Sbjct: 766 NYYQDDINRANILGHKGEVAEEFSVVMKALWLGQYKMISPLDFKGTICKINSRFSSYEHQ 825

Query: 322 ---ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQ 378
              ELL FL+DGLHEDLN+   +   K ++ +   D   AD  W+ H   N+SIIV + Q
Sbjct: 826 DSQELLLFLMDGLHEDLNKADKRRGYKEEEIEHLDDVSAADLAWSKHKQLNESIIVALFQ 885

Query: 379 GQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATT 411
           GQ+KST+ C  C   S TF+ FMYL+L + A++
Sbjct: 886 GQFKSTVQCMSCQHKSRTFETFMYLTLEMTASS 918


>gi|67540368|ref|XP_663958.1| hypothetical protein AN6354.2 [Aspergillus nidulans FGSC A4]
 gi|40739548|gb|EAA58738.1| hypothetical protein AN6354.2 [Aspergillus nidulans FGSC A4]
 gi|259479427|tpe|CBF69639.1| TPA: ubiquitin C-terminal hydrolase, putative (AFU_orthologue;
            AFUA_2G14130) [Aspergillus nidulans FGSC A4]
          Length = 1418

 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 68/149 (45%), Positives = 101/149 (67%), Gaps = 1/149 (0%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            ++L  CL+ F +EE L   D WYCP+CKE R+A KK +LW+ P++LV+HLKRFS SR  +
Sbjct: 1040 VTLNECLDEFNKEEILSENDAWYCPRCKEHRRARKKFELWKTPDILVMHLKRFSASRGFR 1099

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRW 799
             KL+  V+FP+   +LT  V      +  +Y+L+A+ NHYGG+G GHYTA+ K     +W
Sbjct: 1100 DKLDVMVDFPVEGLDLTGRVEAPEEGKSLVYDLFAVDNHYGGLGGGHYTAYAKNFMTGQW 1159

Query: 800  YNFDDSHIS-PINEDDVKSAAAYVLFYRR 827
              ++DS +S PI+  +  +++AY+LFYRR
Sbjct: 1160 NEYNDSSVSRPIDPQNAVTSSAYLLFYRR 1188



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/282 (32%), Positives = 128/282 (45%), Gaps = 59/282 (20%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPL---GMV---- 321
           G   G TGL NLGNTC+MNSA+QC+    E   YF  D Y++++N  NPL   G V    
Sbjct: 454 GKPRGNTGLSNLGNTCYMNSALQCVRSVEELTYYFLNDVYKKDLNPSNPLAHNGDVAKAY 513

Query: 322 -----------------------------------------ELLAFLLDGLHEDLNRVKH 340
                                                    E L FLLDGL EDLNR++ 
Sbjct: 514 ANLLRNIYDEAGHGSFAPRQLKNTIGRYGPAFSGYGQQDSQEFLLFLLDGLQEDLNRIQK 573

Query: 341 KPYIKSKDA------DGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVS 394
           KPYI+  D+      +    +E AD+ W  + ARNDS+I D+  G YKSTLVCPVC+KVS
Sbjct: 574 KPYIEKPDSTDEMVHNKEALKEFADKCWDIYKARNDSVITDLFAGMYKSTLVCPVCDKVS 633

Query: 395 VTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSL 454
           + FDPF  L+L L      + ++  F       P    V + K+   + L + +      
Sbjct: 634 IIFDPFNNLTLQLPIENLWSKSIFYFPL--HKKPIIIDVEIDKNSSIKALKEFIAKKAG- 690

Query: 455 KQSEELKVAEIQNHSIQRFLDD-PLISLSTIKDDDHLAAYRV 495
              E L ++EI      +  D+   I+   I D D +  + +
Sbjct: 691 SDPERLVMSEIYKSKFYKMFDNVSSIADCQIGDSDEIGMFEL 732


>gi|302915887|ref|XP_003051754.1| hypothetical protein NECHADRAFT_38413 [Nectria haematococca mpVI
           77-13-4]
 gi|256732693|gb|EEU46041.1| hypothetical protein NECHADRAFT_38413 [Nectria haematococca mpVI
           77-13-4]
          Length = 1585

 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 142/517 (27%), Positives = 201/517 (38%), Gaps = 114/517 (22%)

Query: 41  IDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVI 97
           +DNSD++ +   +  G    ++       ++ L P++ W  +  WYG   G   + R  I
Sbjct: 249 VDNSDIIQEVLKDPSGGNFTLLKPGFGLDEFTLFPEDAWKMVVEWYGVKEGQEAIVRTAI 308

Query: 98  SSGL--SQTELAVEVYPL-----RLQLLVMP--------RGECSTIRISK---------- 132
           ++     ++ +  E +P      RL   V P              +RIS+          
Sbjct: 309 NTAAPGDESNILYEFHPPLFTVHRLWSQVSPLPIEQSLKANNPPPLRISRSRKYHAQTFI 368

Query: 133 ---KETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDAN-------IQM 182
              K   G    R   +F +   Q         R     +  DR  ++ N       + +
Sbjct: 369 KELKTATGVPLDRKIRLFMVPQIQQEAGPSEPSRALTPPDSPDRADEEPNPADSWSKLLL 428

Query: 183 DQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSL----SIAGGW-SASKGT 237
           D     EV D    +  +    D  +  K   ++    +  +L    +I   W S   G 
Sbjct: 429 DTPSFAEVRDLKVKSTLEDRTTDPNYNGKTTLAIFDLVTDQTLVIDEAIDKSWVSTYTGQ 488

Query: 238 SRNHSSEISTSPNLASARDSDNTLGSS-----GVTTRGA-------SVGLTGLLNLGNTC 285
            R +   I   P   S   S N  G S     G  TRG        SVG  GL NLGNTC
Sbjct: 489 GRANEKSI---PTRGSGLASSNASGRSSPALGGPLTRGRMGKKSGRSVGAVGLQNLGNTC 545

Query: 286 FMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGM------------------------ 320
           +MNSA+QC+    E  +YF  +DY  E+N  NPLG                         
Sbjct: 546 YMNSALQCVRSVEELTKYFLTDDYVDEVNKTNPLGYNGKVAMTYGNLLKEIYTEGRSSVV 605

Query: 321 -----------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDA------DG 351
                                   E L FLLDGL EDL+RVK KPYI+  D+      + 
Sbjct: 606 PRDFKTTIGRCRPTFSGWGQQDSQEFLGFLLDGLQEDLSRVKKKPYIEKPDSTDDMINNP 665

Query: 352 RPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATT 411
              +E+AD+ W     R+DS+I D+  G YKSTL CP C K+S+TFDPF  L+LPL    
Sbjct: 666 AAIKEMADQVWDITRRRDDSVIADLFTGMYKSTLKCPECGKISITFDPFNNLTLPLPVED 725

Query: 412 TRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVL 448
               TVT      S  P +  V +PKH     L Q +
Sbjct: 726 VWHGTVTFLPL--SDAPVSIEVELPKHSAIEQLKQFV 760



 Score =  144 bits (362), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 74/149 (49%), Positives = 105/149 (70%), Gaps = 1/149 (0%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            ++L  CL+ F R E L  +DMWYCP+CKE R+ASKK DLW+ P++LV HLKRFS S   +
Sbjct: 1204 ITLEECLDEFERAEILSEQDMWYCPRCKEHRRASKKFDLWKSPDILVAHLKRFSSSGYRR 1263

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRW 799
             KL+  V+FPI   +LT  V  K   + ++Y+L A+ +HYGG+G GHYTA+ K   + RW
Sbjct: 1264 DKLDVLVDFPIEGLDLTSRVIQKEEGKDEIYDLIAVDDHYGGLGGGHYTAYAKNFVDGRW 1323

Query: 800  YNFDDSHISPINEDDV-KSAAAYVLFYRR 827
            YN++DS +SP+++     ++AAY+LFYRR
Sbjct: 1324 YNYNDSSVSPVSDPSACITSAAYLLFYRR 1352


>gi|145523073|ref|XP_001447375.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124414886|emb|CAK79978.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1010

 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 82/210 (39%), Positives = 107/210 (50%), Gaps = 48/210 (22%)

Query: 256 DSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINW 314
           DSD+           +  G  GL NLGNTCFMNS IQC+ +T     Y   + Y+++IN 
Sbjct: 314 DSDDETMDKLQRNENSMDGKVGLKNLGNTCFMNSGIQCIGNTFPIREYLLSNQYKQDINE 373

Query: 315 QNPLGMV-----------------------------------------------ELLAFL 327
            N LG                                                 EL+ +L
Sbjct: 374 LNTLGTKGELASKYAHLLRRMWYADRTPIPPFSLKRAIGKFQPQFQGFQQHDSQELITYL 433

Query: 328 LDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVC 387
           LDGL+EDL R+K KPY++ KD DGRPD EVA E W     RNDSIIVD   GQYKSTL C
Sbjct: 434 LDGLNEDLCRIKQKPYVERKDYDGRPDFEVAKESWEQFKLRNDSIIVDNLYGQYKSTLRC 493

Query: 388 PVCNKVSVTFDPFMYLSLPLQATTTRTMTV 417
           PVCNK+S+TFDP++ +++ +   TT+ + +
Sbjct: 494 PVCNKISITFDPYLMVNVSIPQNTTKKLEI 523



 Score =  143 bits (361), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 76/178 (42%), Positives = 106/178 (59%), Gaps = 20/178 (11%)

Query: 670  PVTKKARTEP-LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIH 728
            P   K  TE  + L  CL+     E L  E+ WYC QCK+  +A K +++++ P++L+ H
Sbjct: 831  PTNIKVGTEKSMKLGECLKFSEEPEQLDEENTWYCNQCKDHVRAFKVMEIYKTPKILIFH 890

Query: 729  LKRFSYS-RSMKHKLETFVNFPIHDFNLTKYVANKN--------------SSRRQLYELY 773
            LKRF  S +  K KLET ++FPI DF++ ++V N +               +    Y+LY
Sbjct: 891  LKRFKNSNKFFKSKLETLIDFPIQDFDIREFVQNHHLPSEFHTEDPENPKFNNPIYYDLY 950

Query: 774  ALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKS----AAAYVLFYRR 827
            A++NH+GG+G GHYTA  K   +N WYNFDDS + PI ED V S    +AAYVLFYRR
Sbjct: 951  AISNHFGGLGGGHYTAFAKNYYDNTWYNFDDSSVYPIKEDSVNSTLITSAAYVLFYRR 1008


>gi|170050063|ref|XP_001870989.1| ubiquitin specific protease [Culex quinquefasciatus]
 gi|167871652|gb|EDS35035.1| ubiquitin specific protease [Culex quinquefasciatus]
          Length = 1755

 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 104/274 (37%), Positives = 131/274 (47%), Gaps = 53/274 (19%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV----------- 321
           G TGL NLGNTCFMN+A+Q L +T   A+YF +  +  E+N  N LG             
Sbjct: 697 GATGLHNLGNTCFMNAALQVLFNTQPLAQYFAKRMHLYELNVNNKLGTKGQLAMRYAELL 756

Query: 322 ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                               ELL +LLD LHEDLNRV  KPY +
Sbjct: 757 REVWTASQRSIAPLKLRFCVTKHAPQFSGGGQHDSQELLDWLLDSLHEDLNRVMEKPYSE 816

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
            KD+DGR D  VA E W+ H ARN SIIVD+  GQ KS + C  C + SV FDPF  LSL
Sbjct: 817 LKDSDGRADVVVAAEAWSQHHARNQSIIVDLFYGQLKSKVTCSGCGRDSVRFDPFSLLSL 876

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
           PL         V V   DGS +P  Y + +    +  DL + LG +C L + E L + E+
Sbjct: 877 PLPVENYTYCEVLVSLLDGS-VPVKYGLRLNSEQKYWDLKKALGEMCGL-EPELLLICEL 934

Query: 466 QNHSIQRFL-DDPLISLSTIKDDDHLAAYRVPKL 498
            N  I+  L ++  I  ST      L  Y +PK 
Sbjct: 935 SNSQIRCILPNEQKIKPSTACSP--LYVYELPKF 966



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 75/126 (59%), Gaps = 2/126 (1%)

Query: 636  SSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPL 695
            ++TSI + +DW    L        E L    ++  + ++ +TEP+ L  CL AF  EE L
Sbjct: 1373 NTTSIQIAIDWDPTALHLRYQSTRERLWTEHESVAICRRQQTEPVDLDHCLRAFTSEEKL 1432

Query: 696  VPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNL 755
              E  ++C  CK+++ A+KKL +W+LP +L++HLKRF++  +   K +  VNFP  DF+ 
Sbjct: 1433 --EQYYHCSHCKQKKPATKKLQIWKLPPILIVHLKRFNFVNNKWVKSQKVVNFPYEDFDP 1490

Query: 756  TKYVAN 761
            T Y+A+
Sbjct: 1491 TPYLAS 1496



 Score = 50.4 bits (119), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 67/183 (36%), Gaps = 73/183 (39%)

Query: 1   WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDL--VNDATAED---- 54
           WWQHW  Y    QP+ T    S   H   A S A+ R + +  S +  V++A   D    
Sbjct: 361 WWQHWQQYT---QPSVT----SSCVHCKVASSYANSRSNAVGGSGMPGVDEAVICDESFT 413

Query: 55  --------------------------------PGAGPEIVD------------------- 63
                                           PG  P ++D                   
Sbjct: 414 SNSTESMGDLLNTGGDSSSLGSGSSGISCGRQPGGPPGVIDNGNLIAPVMYKQIPTLTGE 473

Query: 64  --------TLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRL 115
                   TL++ RD+ L+P  +W  L  WY G   L R+VI   LS  E+ +E+YPL L
Sbjct: 474 GGRLKRDLTLVQHRDFELVPDSLWKALSQWYDGPLPLPRQVIQP-LSSAEVELELYPLNL 532

Query: 116 QLL 118
           ++L
Sbjct: 533 RIL 535


>gi|308510440|ref|XP_003117403.1| hypothetical protein CRE_02121 [Caenorhabditis remanei]
 gi|308242317|gb|EFO86269.1| hypothetical protein CRE_02121 [Caenorhabditis remanei]
          Length = 1140

 Score =  145 bits (366), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/294 (31%), Positives = 138/294 (46%), Gaps = 60/294 (20%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLG------------- 319
           G TGL N+GNTCFMN+ +Q LV+  E   +F R+ Y+ EIN  NPLG             
Sbjct: 422 GHTGLRNIGNTCFMNAILQMLVNNIELREFFLRDHYQSEINESNPLGSEGRLARAFADFM 481

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E L+FLLDGLHED+NRVK KP   
Sbjct: 482 HQMWSGRHKAIEPIQIKNIVAEKASQFANFAQHDAHEFLSFLLDGLHEDVNRVKKKPLTG 541

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNK------VSVTFDP 399
           + ++ GR D +V++E W NHI RNDSI VD+  GQ KS + CP C++      VS+TFDP
Sbjct: 542 TVESHGRHDLDVSNEAWKNHILRNDSIFVDLFHGQLKSHVQCPNCDRVSFFFSVSITFDP 601

Query: 400 FMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEE 459
           F+YL +P      ++ ++  +  +  A P   TV+    G   D +  +  +  +  S  
Sbjct: 602 FVYLPVPF-PKRKKSTSLIFWPLENQAKPYKLTVSYSTEGTVADFLSAVSEVVRVP-SRN 659

Query: 460 LKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRV---PKLVKKAVFLQLIHR 510
           L+  E   H   R     +  +S I   D+L  ++     +  ++ V L ++ R
Sbjct: 660 LRACEALCHRFDRIYTSDM-KVSDIISPDYLFVFQTHDESECNEEVVVLHVVQR 712



 Score = 89.4 bits (220), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 83/162 (51%), Gaps = 20/162 (12%)

Query: 682  LYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY------- 734
            L   L  F   E L PE+ WYC  CKE  +A+K+L L+RLP VL+I LKRF Y       
Sbjct: 955  LTQMLGLFSETERLKPEESWYCSTCKEHVEATKRLQLYRLPPVLIIQLKRFVYTAFTHQA 1014

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVA----NKNSSRRQLYELYALTNHYGGMGSGHYTAH 790
            S   + K E  V +P+   +++ +++    N NS+   +Y+L  +  H G    GHY + 
Sbjct: 1015 SMHRRSKDERTVEYPLESLDMSPFLSDTSPNHNST---IYDLTGVVCHNGSSYFGHYVSL 1071

Query: 791  IKLLDEN------RWYNFDDSHISPINEDDVKSAAAYVLFYR 826
             +L D +       W  FDDS +       +++  AY+LFY+
Sbjct: 1072 GRLPDFDSSKTKIEWRKFDDSMVQRQPSGHLQTDDAYLLFYK 1113


>gi|323450041|gb|EGB05925.1| hypothetical protein AURANDRAFT_38275 [Aureococcus anophagefferens]
          Length = 581

 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 84/254 (33%), Positives = 131/254 (51%), Gaps = 18/254 (7%)

Query: 249 PNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLV--HTPEFARYFRE 306
           P      + DN LG+ G   R  +  +  + +      + +A++  +  H P+F+ Y ++
Sbjct: 29  PTFLDEINEDNPLGAGGQIARAYADFVRDVWSGKFAVVVPTALKRSIGTHAPQFSGYQQQ 88

Query: 307 DYRREINWQNPLGMVELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHI 366
           D +            EL+ ++LDGLHEDLNR+K KPY ++ +++GRPD EV+ E W+   
Sbjct: 89  DSQ------------ELMNYVLDGLHEDLNRIKRKPYTETLESNGRPDAEVSRESWSRFQ 136

Query: 367 ARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSA 426
            RN S+IVD C GQ KS + CP CN  S+TFDP++ LSLPL A  TR + VT+       
Sbjct: 137 MRNKSVIVDTCYGQLKSHITCPNCNHESITFDPYLSLSLPLPAAKTRRVAVTLLKLPLGT 196

Query: 427 LPSTYTVTVPKH---GRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLST 483
            P    V VP     G  +D +  L      +   +L + ++  H + R   D   S+  
Sbjct: 197 RPLKLVVAVPARETVGALKDALVALAYGADARSGGDLDLCDVWGHRVYRTFADAF-SVEH 255

Query: 484 IKDDDHLAAYRVPK 497
           IK +D L A+ + +
Sbjct: 256 IKPNDELVAFELDR 269



 Score =  129 bits (324), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 62/153 (40%), Positives = 93/153 (60%), Gaps = 5/153 (3%)

Query: 680 LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM- 738
           + +  C       E L   + WYC +CK+  +A KKLDLW +P+VL++HLKRF Y+++  
Sbjct: 423 IDVLDCFRKLAEREQLGETEQWYCAKCKQHSRAFKKLDLWSVPDVLILHLKRFQYAQNTY 482

Query: 739 ---KHKLETFVNFPIHDFNLTKYV-ANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
              + KL+  V+FP+ D +L+  V   K+  R  LY+LYA++ H GG+G GHYTA     
Sbjct: 483 FVHRQKLDDLVSFPLRDLDLSSQVLGAKDDPRGCLYDLYAVSEHSGGLGGGHYTATAIDD 542

Query: 795 DENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
               WY+++DS +S  +   V S+ AYVLFY+R
Sbjct: 543 ATQVWYHYNDSLVSRADPSTVVSSQAYVLFYKR 575


>gi|358399567|gb|EHK48904.1| hypothetical protein TRIATDRAFT_289756 [Trichoderma atroviride IMI
            206040]
          Length = 1555

 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 74/153 (48%), Positives = 103/153 (67%), Gaps = 1/153 (0%)

Query: 676  RTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYS 735
            R+  ++L  CL+ F R E L  +DMWYCP+CKE R+ASKK DLW+ P+ L+ HLKRFS S
Sbjct: 1210 RSRGITLEECLDEFERAEVLSEQDMWYCPRCKEHRRASKKFDLWKTPDYLIAHLKRFSSS 1269

Query: 736  RSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLD 795
               + KL+  V+FPI   +LT  V  K   + ++Y+L A+ +HYGG+G GHYTA+ K   
Sbjct: 1270 GWRRDKLDVLVDFPIEGLDLTSRVIQKEDGKEEIYDLIAVDDHYGGLGGGHYTAYAKNFV 1329

Query: 796  ENRWYNFDD-SHISPINEDDVKSAAAYVLFYRR 827
            + RWYN++D S  S  +   V ++AAY+LFYRR
Sbjct: 1330 DGRWYNYNDSSVSSVSDPSSVVTSAAYLLFYRR 1362



 Score =  139 bits (351), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 88/243 (36%), Positives = 112/243 (46%), Gaps = 56/243 (23%)

Query: 256 DSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINW 314
           D   T G       G S+G  GL NLGNTC+MNSA+QC+    E  +YF  E Y  E+N 
Sbjct: 528 DGPATRGRMQKKKNGRSLGAVGLHNLGNTCYMNSALQCVRSVEELTKYFLTEAYASELNK 587

Query: 315 QNPLGM-----------------------------------------------VELLAFL 327
            NPLG                                                 E L FL
Sbjct: 588 SNPLGYNGKVATAYNGLLREIYDEGRGSVSPRDFKNTVGRCRTTFAGWGQQDSQEFLGFL 647

Query: 328 LDGLHEDLNRVKHKPYIKSKDAD----GRPD--EEVADEYWANHIARNDSIIVDVCQGQY 381
           LD L EDL+R+K KPYI+  D+       P+  +E+AD+ W     R+DSII D+  G Y
Sbjct: 648 LDALQEDLSRIKKKPYIEKPDSTDDMINNPEAIKEMADKVWDITRKRDDSIIADLFTGMY 707

Query: 382 KSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRC 441
           KSTL CP C K+S+TFDPF  L+LPL      + TV  F  +   +P  + V +PKH   
Sbjct: 708 KSTLKCPECGKISITFDPFNNLTLPLPVENMWSKTVKFFPLND--VPVQFEVELPKHSSI 765

Query: 442 RDL 444
             L
Sbjct: 766 ESL 768


>gi|149247252|ref|XP_001528040.1| hypothetical protein LELG_00560 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146447994|gb|EDK42382.1| hypothetical protein LELG_00560 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 1442

 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 106/346 (30%), Positives = 154/346 (44%), Gaps = 79/346 (22%)

Query: 273 VGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM----------- 320
           VG  G  NLGNTC+MNSA+QCL+H PE  +YF    YR+E+N  NPLG            
Sbjct: 399 VGRMGFSNLGNTCYMNSALQCLLHVPEVNKYFHYGVYRKELNVDNPLGYHGNIANSFGTL 458

Query: 321 --------------------------------------VELLAFLLDGLHEDLNRVKHKP 342
                                                  E L++LLD LHEDLNR+K KP
Sbjct: 459 LKSAFDPLKHTSSILPRDFKLTIGRYSSVFSGYLQQDSQEFLSWLLDALHEDLNRIKAKP 518

Query: 343 YIKSKDADGRPDEEV---------ADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKV 393
           Y +  + +   D+E+         AD  W  H+ RNDS+I D+  G Y+STLVCP CNK 
Sbjct: 519 YCEKPELN---DDEISDWNAIVRLADTCWKQHLQRNDSVITDLFTGLYQSTLVCPDCNKT 575

Query: 394 SVTFDPFMYLSLPLQATTTRTMTVTVFT-SDGSALPSTYT---VTVPKHGRCRDLIQVLG 449
           S+TFDPF  L+LPL  +     T T+   S    LP+      V + K      L+  L 
Sbjct: 576 SITFDPFNDLTLPLPISKKWYHTFTIVDLSSLRLLPTRVMRLEVELQKTSNYDALVAYLA 635

Query: 450 NICSLKQSEELKVAEIQNHSIQRFLDD-------PLISLSTIKDDDHLAAYRVPKLVKKA 502
               +  S        QN     F  D       P+  +  I+D D +  Y +P  V+  
Sbjct: 636 KYLKVPLSFLFIYELFQNSIYADFQADYNKNKFMPIGDI--IRDADDILVYIIPHDVEND 693

Query: 503 VFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQ 548
           + L + + +++++    +       +G PL  ++ + ++ S G I+
Sbjct: 694 IILPVYNAVEDED----KLYQMVHYFGLPLFVTLDKSNLASFGTIK 735



 Score =  129 bits (324), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 64/166 (38%), Positives = 109/166 (65%), Gaps = 2/166 (1%)

Query: 664  EVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPE 723
            E+ +N    ++ R   +SL  CL+ F   E L   D+WYCP+CK  ++A+K + LW   +
Sbjct: 1103 ELEQNKAKFERQRKSRISLAECLKYFSTPELLGEHDLWYCPRCKAHKRATKTIQLWSAGD 1162

Query: 724  VLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQ-LYELYALTNHYGGM 782
            +L IHLKRF  +R+   K++  ++FPI   +++ +V+N    +   +Y+L A+ NHYGG+
Sbjct: 1163 ILTIHLKRFHSARAFSDKIDVVIDFPILGLDISDFVSNPTIKKEDCVYDLIAVDNHYGGL 1222

Query: 783  GSGHYTAHIKLLDENRWYNFDDSHISPINE-DDVKSAAAYVLFYRR 827
            G GHYTA +K   +++WY F+DS ++ I++ ++V ++AAY+LFYR+
Sbjct: 1223 GGGHYTASVKNFCDDKWYYFNDSRVTEISDPEEVITSAAYLLFYRK 1268


>gi|443714551|gb|ELU06915.1| hypothetical protein CAPTEDRAFT_166013 [Capitella teleta]
          Length = 981

 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 61/156 (39%), Positives = 102/156 (65%), Gaps = 5/156 (3%)

Query: 670 PVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHL 729
           P+ +  R   +SL+ CL  F + E +  E  W CPQCK +R+A+K++ +W+LP +L+IHL
Sbjct: 821 PIAQGTR---VSLHECLSLFSKRESMTGESRWDCPQCKCKREATKRIVVWKLPPILIIHL 877

Query: 730 KRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTA 789
           KRF Y    + K+ T V++P+   ++ +YVA     +  ++ LYA++NHYG +  GHYTA
Sbjct: 878 KRFYYRGMWRDKITTHVDYPLEGLDMGRYVA--GPKKPPVFNLYAVSNHYGTLDGGHYTA 935

Query: 790 HIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
            +K    ++WY +DD+ +  +++ DV+S+A Y+LFY
Sbjct: 936 SVKNAKNHKWYKYDDTEVYEVSKSDVQSSAGYILFY 971



 Score =  126 bits (317), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 110/226 (48%), Gaps = 55/226 (24%)

Query: 234 SKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQC 293
           SK   +  + +I T  + A  R+ + T GS        + GL GL N+GNTC+MNS IQC
Sbjct: 608 SKPRPKADTLQIRTDVSAAKVRNLNPTWGS-------VAPGLCGLRNIGNTCYMNSIIQC 660

Query: 294 LVHTPEFARYFRED-YRREINWQNPLGM-------------------------------- 320
           L +T     YF  D Y ++IN +N  G                                 
Sbjct: 661 LSNTIPLTVYFLSDIYVQDINKENVFGKGGVIAEEYSVVNKGLWSGQYKSINPRDLWSTL 720

Query: 321 ---------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANH 365
                           ELL FL+DGLHEDLN+VK +P +  ++ +G  D++ A   W  H
Sbjct: 721 GRFYSLFASHEHQDSQELLLFLMDGLHEDLNKVKKRPQLPEQNNNGVSDQQAASTAWYMH 780

Query: 366 IARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATT 411
              N+SIIV++ QGQ+KST+ C  C+K SVTFD F+ LSLP+   T
Sbjct: 781 KQINESIIVELFQGQFKSTVTCMTCSKESVTFDAFVNLSLPIAQGT 826


>gi|340369302|ref|XP_003383187.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19-like
           [Amphimedon queenslandica]
          Length = 1041

 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/269 (35%), Positives = 131/269 (48%), Gaps = 51/269 (18%)

Query: 276 TGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLG-----------MV-- 321
           TG+ NLGNTCFM+S +QCL +T E   +F  E YR +IN  NPLG           M+  
Sbjct: 412 TGIANLGNTCFMSSILQCLSNTVEVRDFFLGEKYRTDINKDNPLGCQGQLAECFYTMIDK 471

Query: 322 ----------------------------------ELLAFLLDGLHEDLNRVKHKPYIKSK 347
                                             E   F LDGLHEDLNR+K KP     
Sbjct: 472 LWSGKMAYISPRKIKDLIGSRRDEFSGYAQQDAHEFTTFFLDGLHEDLNRIKSKPVTAQI 531

Query: 348 DADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPL 407
           ++DGRPD  V++E W+N+  RNDS IVD+  GQ+KS LVCP C+K SVTFDPF  LS+PL
Sbjct: 532 ESDGRPDSVVSEESWSNYKKRNDSFIVDLFGGQFKSLLVCPDCSKESVTFDPFSSLSVPL 591

Query: 408 QATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAE-IQ 466
              +  T++V   + D    P    V++        +   +    S+   + L+V E I+
Sbjct: 592 PVKSV-TLSVIFISKDPLTPPKEVVVSLSSESTLELVKASVATKTSVTM-KNLRVFEVIK 649

Query: 467 NHSIQRFLDDPLISLSTIKDDDHLAAYRV 495
           N  +     +    LS +KD+D +    V
Sbjct: 650 NGRLVNMAVNHKKKLSEMKDNDFIVICEV 678



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/158 (38%), Positives = 98/158 (62%), Gaps = 10/158 (6%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSR-SM 738
            + L  CL+ F   E L  E+ WYCP+CKE R+A+K+L + RLP +L+IHLKRFS+S  + 
Sbjct: 881  IRLKDCLQLFTEPETLPKENAWYCPRCKEHREATKRLSVSRLPHILIIHLKRFSFSDLTR 940

Query: 739  KHKLETFVNFPIHDFNLTKYVANKNSSRR-------QLYELYALTNHYGGMGSGHYTAHI 791
            + K++  V FP+   +++ Y+    SS          LY+LYA  NHYG + +GHY A++
Sbjct: 941  RTKIDKHVEFPLTGLDMSPYIHTDPSSYTAATNGTPALYDLYATVNHYGAVFAGHYVANV 1000

Query: 792  --KLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
              +  D+  W  +DD +++ I+++ +   + Y+LFYRR
Sbjct: 1001 LSQNGDKRDWLRYDDENVTRISKNYISDNSTYLLFYRR 1038


>gi|313242252|emb|CBY34415.1| unnamed protein product [Oikopleura dioica]
          Length = 927

 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/224 (39%), Positives = 109/224 (48%), Gaps = 49/224 (21%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVH-TPEFARYFREDYRREINWQNPLG------------- 319
           G TGL NLGNTC+MNS IQ L    P   ++  + YR +IN +N LG             
Sbjct: 583 GYTGLKNLGNTCYMNSIIQSLGSLAPLVEKFLTDKYRADINKKNFLGHKGLVAEHFAVVA 642

Query: 320 ----------------------------------MVELLAFLLDGLHEDLNRVKHKPYIK 345
                                               ELL FLLDGLHEDLN+VK + YI+
Sbjct: 643 KGLWHGGFKNFQPRMFKEALASCNPIFGNYKQQDAQELLIFLLDGLHEDLNKVKDRRYIE 702

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
            KDADGRPD+ VADE W NH   N SIIVD+ QGQ+K+T+ C  C   SV FD FM+LSL
Sbjct: 703 EKDADGRPDQLVADESWENHTRLNKSIIVDLFQGQFKATIKCLSCKFTSVKFDAFMFLSL 762

Query: 406 PLQATTTRTMTVTV-FTSDGSALPSTYTVTVPKHGRCRDLIQVL 448
           P+  +   T+   +        L      T PK  R RD  + L
Sbjct: 763 PIPTSGKATLESCLNLFQQTEKLTGDDRWTCPKCKRARDAERTL 806



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/146 (37%), Positives = 79/146 (54%), Gaps = 5/146 (3%)

Query: 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKH 740
           +L +CL  F + E L  +D W CP+CK  R A + L LWR+P +L+IHLKRF      K 
Sbjct: 771 TLESCLNLFQQTEKLTGDDRWTCPKCKRARDAERTLRLWRMPTLLIIHLKRFKSDGRWKS 830

Query: 741 KLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGG-MGSGHYTAHIKLLDENRW 799
           K+ T +++P   F+L      K   ++  Y L A+T+H G    SGHY A  +      W
Sbjct: 831 KVSTNISYPTTGFDLKPQTLGK--KKQPPYNLIAVTHHIGASTDSGHYVASCR--RAKGW 886

Query: 800 YNFDDSHISPINEDDVKSAAAYVLFY 825
              DD+ ++ I+E    S  AY+LFY
Sbjct: 887 VKADDAEVTAISESKAISPTAYILFY 912


>gi|301111474|ref|XP_002904816.1| ubiquitin-specific protease, putative [Phytophthora infestans T30-4]
 gi|262095146|gb|EEY53198.1| ubiquitin-specific protease, putative [Phytophthora infestans T30-4]
          Length = 1769

 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/251 (36%), Positives = 120/251 (47%), Gaps = 53/251 (21%)

Query: 269  RGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV------ 321
            R  S G  GL NLGNTC+MNSA+QCL +T   A YF    Y  +IN  + LG+       
Sbjct: 956  RMRSGGSVGLANLGNTCYMNSALQCLTNTKLLAEYFLSGMYLEDINRTSTLGLQGKLAEV 1015

Query: 322  -----------------------------------------ELLAFLLDGLHEDLNRVKH 340
                                                     ELLAFLL GL EDLNR++ 
Sbjct: 1016 YGKLAEDMWCVKQKSISPRNFKKSIGKFNEVFRGNDQQDAQELLAFLLSGLSEDLNRIQD 1075

Query: 341  KPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPF 400
            KPYI+  D+DGR D ++ADE+W NH+ R  SIIV +  GQYKS L C VC   S  F+PF
Sbjct: 1076 KPYIEQPDSDGRYDADLADEWWRNHLRREVSIIVALFTGQYKSLLTCSVCGFKSARFEPF 1135

Query: 401  MYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEEL 460
             +L +PL      T+TV +  ++G   P   +V +       DL   L  +C     EE 
Sbjct: 1136 TFLQVPLPEPKHNTVTVQLMLANG-VTPMKVSVRLSISATIFDLKHELMKMC----REEF 1190

Query: 461  KVAEIQNHSIQ 471
             +A++    I+
Sbjct: 1191 DLADVTESDIK 1201



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 70/124 (56%), Gaps = 11/124 (8%)

Query: 641  VVYVDWSQKLLEKYNT----HFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLV 696
             + +DW   + +   T      +EN   V +N  + K     P+ L  CL+AF  EE + 
Sbjct: 1480 AIAIDWDLSVFQDRETMDTMKHVENHESVARNEAIDKG----PVPLKHCLDAFTSEEKI- 1534

Query: 697  PEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLT 756
                 YC  C++ ++ +KKL++WRLP V+V+HLKRF Y+++ + KL + V FPIHD +L 
Sbjct: 1535 --SEGYCSSCRKHQEMTKKLEIWRLPPVMVVHLKRFQYTQTYRRKLASLVEFPIHDLDLQ 1592

Query: 757  KYVA 760
              VA
Sbjct: 1593 CCVA 1596


>gi|221481696|gb|EEE20072.1| ubiquitin carboxyl-terminal hydrolase, putative [Toxoplasma gondii
           GT1]
          Length = 1171

 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/196 (42%), Positives = 102/196 (52%), Gaps = 50/196 (25%)

Query: 262 GSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLGM 320
           G   +    AS G+ GL NLGNTCF+NSA+QCL      + YF    +  +IN +N +G 
Sbjct: 341 GPENIDEMFASGGICGLSNLGNTCFLNSAVQCLSKVLPLSYYFLSGKFVADINEENVMGT 400

Query: 321 V-----------------------------------------------ELLAFLLDGLHE 333
                                                           EL+AFLLDGLHE
Sbjct: 401 QGRLARAYHATLRDMWFGGESSLAPRDLKAAVGRVREEFLGYNQQDSQELIAFLLDGLHE 460

Query: 334 DLNRVKHKPYIKSKDADG--RPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCN 391
           DLNR+K KPY +SK   G  +PD +VA+  W  H   NDS+IVD+ QGQY+S L CP C 
Sbjct: 461 DLNRIKKKPYYESKIEGGPEKPDAQVAELSWQRHKEINDSVIVDLFQGQYRSRLECPACR 520

Query: 392 KVSVTFDPFMYLSLPL 407
           KVSVTFDPFMYLSLP+
Sbjct: 521 KVSVTFDPFMYLSLPV 536



 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 67/154 (43%), Positives = 92/154 (59%), Gaps = 14/154 (9%)

Query: 685  CLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF-SYSRSMKHKLE 743
            CL  F  +E L  E+MWYC  CKE  QA KKLDLW++P++L++HLKRF +  R  + K+ 
Sbjct: 976  CLRLFSEQERLDVENMWYCSSCKEHVQAYKKLDLWKMPKILILHLKRFHNIGRFTRSKIG 1035

Query: 744  TFVNFPIHD---FNLTKYVA--------NKNSSRRQLYELYALTNHYGGMGSGHYTAHIK 792
            T V FP       ++T Y+          K+     LYEL A+  H G +G GHY A+ K
Sbjct: 1036 TKVTFPYKAGDYLDMTPYILPESLEMMHAKDQGLAPLYELVAVNVHSGELGGGHYFAYAK 1095

Query: 793  LLDENRWYNFDDSHISPINEDDVKSAAAYVLFYR 826
            L    RWY+F+DS + P++ED   S+ AY+LFYR
Sbjct: 1096 L--RGRWYDFNDSWVQPVSEDSCHSSDAYMLFYR 1127


>gi|403351484|gb|EJY75236.1| Ubiquitin carboxyl-terminal hydrolase [Oxytricha trifallax]
          Length = 697

 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 77/190 (40%), Positives = 103/190 (54%), Gaps = 48/190 (25%)

Query: 266 VTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDY-RREINWQNPLGMV--- 321
           + ++ A +GLTGL NL N+C+MNS+IQCL HT     YF   Y + E+N++NPLG     
Sbjct: 348 IKSQHARMGLTGLKNLRNSCYMNSSIQCLSHTIGLTNYFLNGYFKNELNFKNPLGAQGQL 407

Query: 322 --------------------------------------------ELLAFLLDGLHEDLNR 337
                                                       ELL F+LDGLHEDLNR
Sbjct: 408 AISFAKLLKQLWYDDKHSLAPWQFKKTIGKFAKAFNNYEQQDSQELLNFILDGLHEDLNR 467

Query: 338 VKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTF 397
           V+ KP +   + +G  DE  A+  W N + RN SIIVD+  GQ+KST+ CP C+KVS+TF
Sbjct: 468 VQEKPIVPQIECEGFNDELDANLSWQNFLKRNQSIIVDLMHGQFKSTVRCPDCDKVSITF 527

Query: 398 DPFMYLSLPL 407
           DP+M +SLP+
Sbjct: 528 DPYMSISLPI 537


>gi|237832289|ref|XP_002365442.1| ubiquitin carboxyl-terminal hydrolase, putative [Toxoplasma gondii
           ME49]
 gi|211963106|gb|EEA98301.1| ubiquitin carboxyl-terminal hydrolase, putative [Toxoplasma gondii
           ME49]
          Length = 1100

 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/196 (42%), Positives = 102/196 (52%), Gaps = 50/196 (25%)

Query: 262 GSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLGM 320
           G   +    AS G+ GL NLGNTCF+NSA+QCL      + YF    +  +IN +N +G 
Sbjct: 341 GPENIDEMFASGGICGLSNLGNTCFLNSAVQCLSKVLPLSYYFLSGKFVADINEENVMGT 400

Query: 321 V-----------------------------------------------ELLAFLLDGLHE 333
                                                           EL+AFLLDGLHE
Sbjct: 401 QGRLARAYHATLRDMWFGGESSLAPRDLKAAVGRVREEFLGYNQQDSQELIAFLLDGLHE 460

Query: 334 DLNRVKHKPYIKSKDADG--RPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCN 391
           DLNR+K KPY +SK   G  +PD +VA+  W  H   NDS+IVD+ QGQY+S L CP C 
Sbjct: 461 DLNRIKKKPYYESKIEGGPEKPDAQVAELSWQRHKEINDSVIVDLFQGQYRSRLECPACR 520

Query: 392 KVSVTFDPFMYLSLPL 407
           KVSVTFDPFMYLSLP+
Sbjct: 521 KVSVTFDPFMYLSLPV 536



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/127 (41%), Positives = 71/127 (55%), Gaps = 14/127 (11%)

Query: 685  CLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF-SYSRSMKHKLE 743
            CL  F  +E L  E+MWYC  CKE  QA KKLDLW++P++L++HLKRF +  R  + K+ 
Sbjct: 976  CLRLFSEQERLDVENMWYCSSCKEHVQAYKKLDLWKMPKILILHLKRFHNIGRFTRSKIG 1035

Query: 744  TFVNFPIHD---FNLTKYVA--------NKNSSRRQLYELYALTNHYGGMGSGHYTAHIK 792
            T V FP       ++T Y+          K+     LYEL A+  H G +G GHY A+ K
Sbjct: 1036 TKVTFPYKAGDYLDMTPYILPESLEMMHAKDQGLAPLYELVAVNVHSGELGGGHYFAYAK 1095

Query: 793  LLDENRW 799
            L    RW
Sbjct: 1096 L--RGRW 1100


>gi|396479609|ref|XP_003840796.1| hypothetical protein LEMA_P104480.1 [Leptosphaeria maculans JN3]
 gi|312217369|emb|CBX97317.1| hypothetical protein LEMA_P104480.1 [Leptosphaeria maculans JN3]
          Length = 2352

 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 111/362 (30%), Positives = 161/362 (44%), Gaps = 93/362 (25%)

Query: 174  TLDDANIQMDQDILVEVLDN----VNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAG 229
            TL+DA I  DQ I++E  D     ++ TN  ++I                 SK+S  I  
Sbjct: 1252 TLEDAGITQDQIIVLEEHDERGEYISDTNTMATI-----------------SKTSSQITK 1294

Query: 230  GWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNS 289
            G  ++  + RN      TS  L   R           T  G   G  GL NLGNTC+MNS
Sbjct: 1295 GLPSNPNSGRN----TPTSGALTRGR-----------TRSGKVRGHVGLTNLGNTCYMNS 1339

Query: 290  AIQCLVHTPEFARYF-REDYRREINWQNPLG----------------------------- 319
            A+QCL    E + YF    ++ EIN  NP+G                             
Sbjct: 1340 ALQCLRSVEELSMYFLNNKWKEEINVDNPIGHKGAIAKVYANLLSQIYDTGNTSSFAPKN 1399

Query: 320  -------------------MVELLAFLLDGLHEDLNRVKHKPYIKSKDADGR----PD-- 354
                                 E +++L+D LHEDLNRV+ KPY ++ D+D      P+  
Sbjct: 1400 FKQTLGRANGLFSGYGQQDSQEFVSWLVDALHEDLNRVRVKPYRENPDSDDNTFKDPNAV 1459

Query: 355  EEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRT 414
             ++ + Y  NH ARNDS+ +D+  G YK+T+VCP C+KVS+TFDP+  L+L L    T T
Sbjct: 1460 RQLGETYRENHRARNDSVAMDLFSGFYKNTMVCPECDKVSITFDPYSQLTLQLPIEQTWT 1519

Query: 415  MTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFL 474
             T+T     G   P    V + K+   + L + +G       ++ +  +E+ +H   R L
Sbjct: 1520 HTITYVPLLGR--PYQLEVDIDKNATIKTLKEYVGKRGGGVPAKRIMASEVYSHKFYRHL 1577

Query: 475  DD 476
            DD
Sbjct: 1578 DD 1579



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 96/153 (62%), Gaps = 2/153 (1%)

Query: 676  RTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYS 735
            R   ++L  C     + E L  ++ WYC +CKE R+A+K L++W +P++L+IHLKRFS  
Sbjct: 1982 RKHGITLEECFTETSKSEVLSEDNAWYCSRCKELRRATKTLEIWTVPDILIIHLKRFSGH 2041

Query: 736  RSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLD 795
            RS + K+E  ++FP+   +LT  V     S+   Y+L+A+ NHYGG+G GHYTA  +   
Sbjct: 2042 RSFRDKIEELIDFPVEGLDLTGKVGFPE-SKDLTYDLFAVDNHYGGLGGGHYTATAQNFF 2100

Query: 796  ENRWYNFDDSHISPINE-DDVKSAAAYVLFYRR 827
            + +WY+++DS +S         S AAY+LFYRR
Sbjct: 2101 DKQWYDYNDSIVSKCESGQKAVSRAAYLLFYRR 2133


>gi|221502235|gb|EEE27973.1| ubiquitin carboxyl-terminal hydrolase, putative [Toxoplasma gondii
           VEG]
          Length = 1100

 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/196 (42%), Positives = 102/196 (52%), Gaps = 50/196 (25%)

Query: 262 GSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLGM 320
           G   +    AS G+ GL NLGNTCF+NSA+QCL      + YF    +  +IN +N +G 
Sbjct: 341 GPENIDEMFASGGICGLSNLGNTCFLNSAVQCLSKVLPLSYYFLSGKFVADINEENVMGT 400

Query: 321 V-----------------------------------------------ELLAFLLDGLHE 333
                                                           EL+AFLLDGLHE
Sbjct: 401 QGRLARAYHATLRDMWFGGESSLAPRDLKAAVGRVREEFLGYNQQDSQELIAFLLDGLHE 460

Query: 334 DLNRVKHKPYIKSKDADG--RPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCN 391
           DLNR+K KPY +SK   G  +PD +VA+  W  H   NDS+IVD+ QGQY+S L CP C 
Sbjct: 461 DLNRIKKKPYYESKIEGGPEKPDAQVAELSWQRHKEINDSVIVDLFQGQYRSRLECPACR 520

Query: 392 KVSVTFDPFMYLSLPL 407
           KVSVTFDPFMYLSLP+
Sbjct: 521 KVSVTFDPFMYLSLPV 536



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/127 (41%), Positives = 71/127 (55%), Gaps = 14/127 (11%)

Query: 685  CLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF-SYSRSMKHKLE 743
            CL  F  +E L  E+MWYC  CKE  QA KKLDLW++P++L++HLKRF +  R  + K+ 
Sbjct: 976  CLRLFSEQERLDVENMWYCSSCKEHVQAYKKLDLWKMPKILILHLKRFHNIGRFTRSKIG 1035

Query: 744  TFVNFPIHD---FNLTKYVA--------NKNSSRRQLYELYALTNHYGGMGSGHYTAHIK 792
            T V FP       ++T Y+          K+     LYEL A+  H G +G GHY A+ K
Sbjct: 1036 TKVTFPYKAGDYLDMTPYILPESLEMMHAKDQGLAPLYELVAVNVHSGELGGGHYFAYAK 1095

Query: 793  LLDENRW 799
            L    RW
Sbjct: 1096 L--RGRW 1100


>gi|403345455|gb|EJY72093.1| Ubiquitin carboxyl-terminal hydrolase [Oxytricha trifallax]
          Length = 1076

 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 84/237 (35%), Positives = 133/237 (56%), Gaps = 17/237 (7%)

Query: 601  SKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLE 660
            S+ +TL +  +++  E+N+ F    EG K          ++  + W+ K+ +++   F  
Sbjct: 815  SRNMTLQDFMMKIGIENNISF--YTEGYK-----RGKNDVIFEIVWNPKIEKQFFDAFQT 867

Query: 661  NLL---EVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLD 717
             +    +   + P T+K  +  ++L  CLE F R E L  ++MWYC +CKE  QA+K L 
Sbjct: 868  AVSFPGQKQLSQPTTQKDESSAITLQDCLEEFERPEMLDQDNMWYCNKCKEHVQATKSLK 927

Query: 718  LWRLPEVLVIHLKRFSYSRSMKH------KLETFVNFPIHDFNLTKYVA-NKNSSRRQLY 770
            L+RLP VLVI+LKRF + + M        KL+T V+FP+   +L  ++  N    +  +Y
Sbjct: 928  LFRLPLVLVINLKRFKHGKRMSMYGAGNGKLQTLVDFPLQGLDLQPHIIRNGPDGQEYIY 987

Query: 771  ELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            +L+ ++NH+GG G GHYTA+     EN+WY+ DDS     N + V S +AY LFYRR
Sbjct: 988  DLFGVSNHFGGCGGGHYTAYALNWMENQWYSLDDSSCQKTNPNRVVSDSAYNLFYRR 1044



 Score =  133 bits (334), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 78/215 (36%), Positives = 106/215 (49%), Gaps = 49/215 (22%)

Query: 249 PNLASARDSDNTLGSSGVT-TRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-RE 306
           P+ ++  D++   G  G   +  A  G  GL NLGNTC+MNS++QCL +  E  RYF  E
Sbjct: 344 PSCSAMADAELQKGVQGFQRSSRARDGKVGLGNLGNTCYMNSSLQCLSNCYELTRYFLDE 403

Query: 307 DYRREINWQNPLGMV--------------------------------------------- 321
            ++ ++N  NPLG                                               
Sbjct: 404 RFKEDLNVDNPLGTSGRLVQAYAKLLNEMWNQEDSVVRPHMFKRILGEYAQQFQGFGQHD 463

Query: 322 --ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQG 379
             E +  +LD L EDL R   KPY++  +A  R D+  A E W  H+ RN+S+IVD+  G
Sbjct: 464 SQECINSILDLLSEDLYRKPKKPYVEQTEAGDRSDDVAAQEAWLKHLVRNESVIVDLFHG 523

Query: 380 QYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRT 414
           QYKSTLVC +C++VSVTFDPFM LSLP+     R 
Sbjct: 524 QYKSTLVCSICSRVSVTFDPFMTLSLPIPGKKERV 558


>gi|295673879|ref|XP_002797485.1| ubiquitin carboxyl-terminal hydrolase [Paracoccidioides sp. 'lutzii'
            Pb01]
 gi|226280135|gb|EEH35701.1| ubiquitin carboxyl-terminal hydrolase [Paracoccidioides sp. 'lutzii'
            Pb01]
          Length = 1516

 Score =  144 bits (364), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 72/149 (48%), Positives = 100/149 (67%), Gaps = 2/149 (1%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            +SL  CL+ F +EE L   D WYCP+CKE R+ASKK +LW+ P++LV+HLKRFS +R  +
Sbjct: 1167 VSLDECLDEFGKEEILSENDAWYCPRCKEHRRASKKFELWKCPDILVMHLKRFSANRGFR 1226

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRW 799
             K++  V+FP H+ ++T  V      +   YEL A+ NHYGG+G GHYTA  K   +  W
Sbjct: 1227 DKIDALVDFP-HELDMTGRVQMPEEGKSLQYELIAVDNHYGGLGGGHYTAFAKNFFDGCW 1285

Query: 800  YNFDDSHIS-PINEDDVKSAAAYVLFYRR 827
            Y ++DSH+S   N   V ++AAY+LFYRR
Sbjct: 1286 YEYNDSHVSKKTNPSAVVTSAAYLLFYRR 1314



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/264 (33%), Positives = 128/264 (48%), Gaps = 62/264 (23%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPL---GMV---- 321
           G S G+TGL NLGN+C+MNSA+QC+    E  +YF +D YR+++N  NPL   G V    
Sbjct: 510 GRSRGVTGLSNLGNSCYMNSALQCVRSVEELTQYFLQDEYRKDLNPGNPLSHDGNVAKAY 569

Query: 322 -----------------------------------------ELLAFLLDGLHEDLNRVKH 340
                                                    E + FLLDGL EDLNR++ 
Sbjct: 570 ANLLHQLFDENGTSSFAPRQFKQTIGRYGPSFSGYGQQDSQEFVLFLLDGLQEDLNRIQK 629

Query: 341 KPYIKSKDA------DGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVS 394
           KPYI+  D+      D    ++ A + W  + ARNDS+I D+  G YKST+VCPVC+KVS
Sbjct: 630 KPYIEKPDSTDDMVNDNAALQQFASKCWDIYKARNDSVITDLFAGMYKSTVVCPVCDKVS 689

Query: 395 VTFDPF--MYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNIC 452
           + FDPF  + L LP++   ++ +      S     P    V + K+   + L + +G   
Sbjct: 690 IIFDPFSNLTLQLPIENLWSKELFFFPLYS----RPVRLDVDIDKNSSVKALKEYVGEKV 745

Query: 453 SLKQSEELKVAEIQNHSIQRFLDD 476
           ++  S  L +AEI      +  D+
Sbjct: 746 NVDTS-RLVMAEIYKQKFYKMFDN 768


>gi|347965501|ref|XP_321947.5| AGAP001209-PA [Anopheles gambiae str. PEST]
 gi|333470482|gb|EAA01803.6| AGAP001209-PA [Anopheles gambiae str. PEST]
          Length = 1958

 Score =  144 bits (364), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 106/294 (36%), Positives = 143/294 (48%), Gaps = 62/294 (21%)

Query: 262  GSSGVTTRG--ASV------GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREI 312
            GS+ +  RG  AS+      G TGL NLGNTCFMN+A+Q L +T    +YF ++ +  E+
Sbjct: 791  GSTSMDRRGTVASIQSQHPPGATGLHNLGNTCFMNAALQVLFNTQPLTQYFIQKKHLYEL 850

Query: 313  NWQNPLGMV-----------------------------------------------ELLA 325
            N  N +G                                                 ELL 
Sbjct: 851  NTSNKMGTKGQLVLRYAELLRDVWTASTRSIAPLKLRFCVTKHAPQFSGGGQHDSQELLD 910

Query: 326  FLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTL 385
            +LLD LHEDLNRV  KPY + KD+DGR D  VA E W+ H ARN SIIVD+  GQ KS +
Sbjct: 911  WLLDSLHEDLNRVMEKPYTELKDSDGRSDVIVATEAWSQHHARNQSIIVDLFYGQLKSKV 970

Query: 386  VCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLI 445
             C  C + SV FDPF  LSLPL         V V   DGS +P  Y + +    +  DL 
Sbjct: 971  TCQGCGRDSVRFDPFSLLSLPLPVENYTYCEVLVMLLDGS-VPVKYGLRLNSEMKYWDLK 1029

Query: 446  QVLGNICSLKQSEELKVAEIQNHSIQRFL-DDPLISLSTIKDDDHLAAYRVPKL 498
            + L  +C L + +++ + E+ N  I+  L ++  I  ST  +   L AY +PK+
Sbjct: 1030 KHLSELCGL-EPDQMLICELSNSQIRLVLPNEHRIKPSTACE---LYAYELPKV 1079



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/123 (39%), Positives = 72/123 (58%), Gaps = 2/123 (1%)

Query: 639  SIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPE 698
            SI + +DW    L        E L  V ++  V +K +TEP+ L  CL AF  EE L  E
Sbjct: 1552 SIQIAIDWDPTALHLRYQSTRERLWTVHESVAVCRKQQTEPVDLDHCLRAFTSEEKL--E 1609

Query: 699  DMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKY 758
              ++C  CK+++ A+KKL +W+LP +L++HLKRF+Y      K +  VNFP  DF+ T Y
Sbjct: 1610 QWYHCSHCKQKKPATKKLQIWKLPPILIVHLKRFNYVNGKWVKSQKVVNFPYEDFDPTPY 1669

Query: 759  VAN 761
            +A+
Sbjct: 1670 LAS 1672



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 6/91 (6%)

Query: 34  ASKRPSGIDNSDLVNDATAED----PGAGPEIVD--TLLEGRDYILLPQEVWNQLHSWYG 87
           A   P  IDNS L+     +      G G  +    TL++ RD+ L+P  +W  L  WYG
Sbjct: 554 AGSAPGTIDNSCLIAPNIYKQIPTLTGEGGRLKRDLTLVQHRDFELVPDSLWKALAQWYG 613

Query: 88  GGPTLARKVISSGLSQTELAVEVYPLRLQLL 118
           G   L R+VI    +  ++ +E+YPL L++L
Sbjct: 614 GPLPLPRQVIQPHSNAGDVELELYPLNLRIL 644


>gi|225684566|gb|EEH22850.1| sorting nexin-41 [Paracoccidioides brasiliensis Pb03]
          Length = 2088

 Score =  144 bits (364), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 72/149 (48%), Positives = 100/149 (67%), Gaps = 2/149 (1%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            +SL  CL+ F +EE L   D WYCP+CKE R+ASKK +LW+ P++LV+HLKRFS +R  +
Sbjct: 1739 VSLDECLDEFGKEEILSENDAWYCPRCKEHRRASKKFELWKCPDILVMHLKRFSANRGFR 1798

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRW 799
             K++  V+FP H+ ++T  V      +   YEL A+ NHYGG+G GHYTA  K   +  W
Sbjct: 1799 DKIDALVDFP-HELDMTGRVQMPEEGKSLQYELIAVDNHYGGLGGGHYTAFAKNFFDGCW 1857

Query: 800  YNFDDSHIS-PINEDDVKSAAAYVLFYRR 827
            Y ++DSH+S   N   V ++AAY+LFYRR
Sbjct: 1858 YEYNDSHVSKKTNPSAVVTSAAYLLFYRR 1886



 Score = 56.6 bits (135), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 135/342 (39%), Gaps = 76/342 (22%)

Query: 41   IDNSDLVNDATAEDPG------AGPEIVD---TLLEGRDYILLPQEVWNQLHSWYG---G 88
            +DNSDLV      DP       AG   V     L  G D+ +LP++ W  +  WYG    
Sbjct: 917  VDNSDLV---LVTDPSLSYKDEAGELFVPLRPGLQIGEDFEVLPEDAWEMIMKWYGLSRD 973

Query: 89   GPTLARKVISSGLSQTE-LAVEVYPLRLQLLVMPRGECSTIRISKKE------TIGELH- 140
             P + R    +    TE +  E+ P    +L +P    S  +I++ +      T+   H 
Sbjct: 974  SPAIVRFAHDTATGTTENVQYELNPPIFTILKLPNPSQSQAQIAQDKARAPVKTLASRHT 1033

Query: 141  ------RRACSIFYLNLE-QICIWDYY-----------------------------GHRK 164
                  R   S+  + +  ++ +W                                 +  
Sbjct: 1034 PFQQWLRNVKSLASIEMSTKVRVWRILEGLNSTATSGIITPAASRSTSPAPGATLTANAG 1093

Query: 165  HALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSS 224
            ++L+ D+++ +  A ++  Q  L+E+ D         S+  +  A      V+V   +  
Sbjct: 1094 NSLVLDVNKFV--ALVEGSQRELLEMKDQTANPKYNGSLTLH-LAGLGGDDVIVLEEQVG 1150

Query: 225  LSIAGGWSAS-KGTSRNH---SSEISTSPNLASARDSDNTLGSS----GVTTRGA----- 271
                G W A   G + NH   S+  + S N A A+    +  +S    G  TRG      
Sbjct: 1151 GPGGGEWVADCAGKNTNHLSVSAIKAGSQNKAKAKAPATSGRASSPAVGPVTRGRQRKDG 1210

Query: 272  -SVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDYRREI 312
             S G+TGL NLGN+C+MNSA+QC+    E  +YF   Y+  +
Sbjct: 1211 RSRGVTGLSNLGNSCYMNSALQCVRSVEELTQYFLRMYKSTV 1252



 Score = 48.9 bits (115), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 7/98 (7%)

Query: 381  YKSTLVCPVCNKVSVTFDPF--MYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKH 438
            YKST+VCPVC+KVS+ FDPF  + L LP++   ++ +      S     P    V + K+
Sbjct: 1248 YKSTVVCPVCDKVSIIFDPFSNLTLQLPIENLWSKELFFFPLYS----RPVRLDVDIDKN 1303

Query: 439  GRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDD 476
               + L + +G   ++  +  L +AEI      +  D+
Sbjct: 1304 SSVKALKEYVGEKVNV-DTNRLVMAEIYKQKFYKMFDN 1340


>gi|226286902|gb|EEH42415.1| ubiquitin carboxyl-terminal hydrolase [Paracoccidioides brasiliensis
            Pb18]
          Length = 1516

 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 72/149 (48%), Positives = 100/149 (67%), Gaps = 2/149 (1%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            +SL  CL+ F +EE L   D WYCP+CKE R+ASKK +LW+ P++LV+HLKRFS +R  +
Sbjct: 1167 VSLDECLDEFGKEEILSENDAWYCPRCKEHRRASKKFELWKCPDILVMHLKRFSANRGFR 1226

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRW 799
             K++  V+FP H+ ++T  V      +   YEL A+ NHYGG+G GHYTA  K   +  W
Sbjct: 1227 DKIDALVDFP-HELDMTGRVQMPEEGKSLQYELIAVDNHYGGLGGGHYTAFAKNFFDGCW 1285

Query: 800  YNFDDSHIS-PINEDDVKSAAAYVLFYRR 827
            Y ++DSH+S   N   V ++AAY+LFYRR
Sbjct: 1286 YEYNDSHVSKKTNPSAVVTSAAYLLFYRR 1314



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 148/563 (26%), Positives = 233/563 (41%), Gaps = 138/563 (24%)

Query: 41  IDNSDLVNDATAEDPG------AGPEIVD---TLLEGRDYILLPQEVWNQLHSWYG---G 88
           +DNSDLV      DP       AG   V     L  G D+ +LP++ W  +  WYG    
Sbjct: 217 VDNSDLV---LVTDPSLSYKDEAGELFVPLRPGLQIGEDFEVLPEDAWEMIMKWYGLSRD 273

Query: 89  GPTLARKVISSGLSQTE-LAVEVYPLRLQLLVMPRGECSTIRISKKE------TIGELH- 140
            P + R    +    TE +  E+ P    +L +P    S  +I++ +      T+   H 
Sbjct: 274 SPAIVRFAHDTATGTTENVQYELNPPIFTILKLPNPSQSQAQIAQDKARAPVKTLASRHT 333

Query: 141 ------RRACSIFYLNLE-QICIWDYY-----------------------------GHRK 164
                 R   S+  + +  ++ +W                                 +  
Sbjct: 334 PFQQWLRNVKSLASIEMSTKVRVWRILEGLNSTATSGIITPAASRSTSPAPGATLTANAG 393

Query: 165 HALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSS 224
           ++L+ D+++ +  A ++  Q  L+E+ D         S+  +  A      V+V   +  
Sbjct: 394 NSLVLDVNKFV--ALVEGSQRELLEMKDQTANPKYNGSLTLH-LAGLGGDDVIVLEEQVG 450

Query: 225 LSIAGGWSAS-KGTSRNH---SSEISTSPNLASARDSDNTLGSS----GVTTRGA----- 271
               G W A   G + NH   S+  + S N A A+    +  +S    G  TRG      
Sbjct: 451 GPGGGEWVADCAGKNTNHLSVSAIKAGSQNKAKAKAPATSGRASSPAVGPVTRGRQRKDG 510

Query: 272 -SVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPL---GMV----- 321
            S G+TGL NLGN+C+MNSA+QC+    E  +YF +D YR+++N  NPL   G V     
Sbjct: 511 RSRGVTGLSNLGNSCYMNSALQCVRSVEELTQYFLQDEYRKDLNPGNPLSHDGNVAKAYA 570

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   E + FLLDGL EDLNR++ K
Sbjct: 571 NLLHQLFDENGTSSFAPRQFKQTIGRYGPSFSGYGQQDSQEFVLFLLDGLQEDLNRIQKK 630

Query: 342 PYIKSKDA------DGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSV 395
           PYI+  D+      D    +  A + W  + ARNDS+I D+  G YKST+VCPVC+KVS+
Sbjct: 631 PYIEKPDSTDDMVNDNAALQRFARKCWDIYKARNDSVITDLFAGMYKSTVVCPVCDKVSI 690

Query: 396 TFDPF--MYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICS 453
            FDPF  + L LP++   ++ +      S     P    V + K+   + L + +G   +
Sbjct: 691 IFDPFSNLTLQLPIENLWSKELFFFPLYS----RPVRLDVDIDKNSSVKALKEYVGEKVN 746

Query: 454 LKQSEELKVAEIQNHSIQRFLDD 476
           +  +  L +AEI      +  D+
Sbjct: 747 V-DTNRLVMAEIYKQKFYKMFDN 768


>gi|241949097|ref|XP_002417271.1| deubiquitinating enzyme 12, putative; ubiquitin carboxyl-terminal
           hydrolase 12, putative; ubiquitin thiolesterase 12,
           putative; ubiquitin-specific processing protease 12,
           putative; ubiquitin-specific protease, putative [Candida
           dubliniensis CD36]
 gi|223640609|emb|CAX44887.1| deubiquitinating enzyme 12, putative [Candida dubliniensis CD36]
          Length = 1309

 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 114/397 (28%), Positives = 179/397 (45%), Gaps = 90/397 (22%)

Query: 227 IAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCF 286
           +A  +     T   H +E  T   + S  ++   +   G        G  GL N+GNTC+
Sbjct: 285 MANTYHIMVETKEKHQTEFPTDQFILSHSNAYEEVAQGG--------GHLGLSNMGNTCY 336

Query: 287 MNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM------------------------- 320
           MNSA+QCL+H PE   YF  + Y++E+N+ NPLG                          
Sbjct: 337 MNSALQCLLHVPEINYYFFYNIYKKELNFDNPLGYHGDVANAFGSLLKQAFDHVKNGSSI 396

Query: 321 ------------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDA------D 350
                                    ELL++LLD LHEDLNR+  KPY +  +       D
Sbjct: 397 SPREFKSTIGRYSSMFSGYLQQDSQELLSWLLDALHEDLNRIHKKPYCEKPELKDDEIDD 456

Query: 351 GRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQAT 410
            +   ++A+  W  H ARNDS+I+D+  G Y+STL+CP C K S+TFDPF  L+LPL  +
Sbjct: 457 PQAINKLANTCWNQHKARNDSVIIDLFTGLYQSTLICPDCGKKSITFDPFNDLTLPLPIS 516

Query: 411 TT--RTMTVTVFTSDGSALPS---TYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
                T T+   +++G  +P       V + K     DL+  L N  ++  S EL + EI
Sbjct: 517 KKWYHTFTIVDLSNEG-VIPERIMKLEVELNKTSNFDDLLGYLSNFLNIP-STELFIYEI 574

Query: 466 QNHSI----------QRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQE 515
             ++I           +FL  P+  +  I+D D +  Y VP      + + + + +++  
Sbjct: 575 FQNAIYSDFQLDYNKNKFL--PISDI--IRDTDDVIVYIVPHNPAVDIIVPVFNAVED-- 628

Query: 516 PGAAQTTSQWKAYGTPLVSSISRD-DVISSGKIQSTV 551
             A  +      +G PL   ++++ DV S G I+  +
Sbjct: 629 --ADSSYQMVNFFGIPLFVVMNKEVDVNSFGFIRKKL 663



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/290 (32%), Positives = 161/290 (55%), Gaps = 22/290 (7%)

Query: 559  LKKESLMHADSFDPSSMVTTVD----PSGEAHSNSSSNIAK-EDASSSKAVTLPNLPLQL 613
            LK++S + A+   P   V   +    PS +  + S +N+    D++S+  +  P+   + 
Sbjct: 854  LKQQSAVPAEMVPPPLPVRNNNGGHIPSSDEETESEANLGSLFDSTSNLPLPPPSTYSES 913

Query: 614  VDESNVCFDLSVEGDKTIRIPSSSTSI----VVYVDWSQKLLEK----------YNTHFL 659
               SNV   +    + +    +S+T I    V+  DW +++ ++           N   L
Sbjct: 914  TKPSNVNSPMESNFESSSAELNSTTLISKDTVLLCDWDKEIFQRCFGDKELQAWENISNL 973

Query: 660  ENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLW 719
             N  E+ KN    ++ R   ++L  CL++F   E L   D+WYCP+C E ++A+K + LW
Sbjct: 974  PNP-ELEKNRAHFERQRKAKITLSDCLKSFSTPEILGEHDLWYCPRCTEHKRATKTIQLW 1032

Query: 720  RLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKN-SSRRQLYELYALTNH 778
               ++L IHLKRF  +R+   K++  V+FPI + +++ YVAN +  +   LY+L A+ NH
Sbjct: 1033 STGDILTIHLKRFHSARAFSDKIDVLVDFPIEELDISSYVANTDLKAEDCLYDLIAVDNH 1092

Query: 779  YGGMGSGHYTAHIKLLDENRWYNFDDSHISPINE-DDVKSAAAYVLFYRR 827
            YGG+G GHYTA +K   +++WY F+DS ++ IN  ++V + +AY+LFYRR
Sbjct: 1093 YGGLGGGHYTASVKNFRDDKWYYFNDSRVTEINNPEEVVANSAYLLFYRR 1142


>gi|348502218|ref|XP_003438666.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 31-like
           [Oreochromis niloticus]
          Length = 1312

 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 117/221 (52%), Gaps = 31/221 (14%)

Query: 634 PSSSTSIVVYVDWSQK----LLEKYNTHFLENLLEVFKNGPVTKKARTEP--LSLYTCLE 687
           P     + + V+W ++    L ++    ++ +   V +     K+   +P   +L  C +
Sbjct: 519 PGGPPHVKIVVEWDKETKDYLFKRTEDEYIPDAESVRQ----VKEQHLQPQTCTLAQCFQ 574

Query: 688 AFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVN 747
            + +EE L P+D W CP CK+ +Q S KL LW LP++L++HLKRF      + K++  V 
Sbjct: 575 LYTKEEQLAPDDAWRCPHCKQLQQGSIKLSLWTLPDILILHLKRFRQDGDRRMKMQNMVK 634

Query: 748 FPIHDFNLTKYVANKNSS-----------RRQ----------LYELYALTNHYGGMGSGH 786
           FP+   ++  ++  ++ S           RR           LY+LYA+ NH+G M  GH
Sbjct: 635 FPLTGMDMAPHMVKRSQSSWSLPSHWSPWRRPYGMGRDPEDYLYDLYAVCNHHGTMQGGH 694

Query: 787 YTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           YTAH K   + +WY FDDS + P++ED+V    AY+LFY+R
Sbjct: 695 YTAHCKNSIDGQWYCFDDSDVHPMSEDEVCKQTAYILFYQR 735



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 99/221 (44%), Gaps = 22/221 (9%)

Query: 290 AIQCLVHTPEFARYFREDYRR---EINWQNPLGMVELLAFLLDGLHEDLN-------RVK 339
           A+    +TP+ +R F+    +   +    +     E L +LLD +HEDLN       R+ 
Sbjct: 165 ALWTFEYTPQHSRDFKNVVSKSALQFKGNSQHDAQEFLLWLLDRVHEDLNQIVPLDSRLP 224

Query: 340 HKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDP 399
            KP +         +EE   E   + +    S + ++ Q QY+S+L CP C K S TFDP
Sbjct: 225 RKPPV---------EEETVPE--GSPLPAPGSFVQELFQAQYRSSLTCPHCQKQSNTFDP 273

Query: 400 FMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEE 459
           F+ +SLP+    TR + VTV      +      V VP  G    L Q +     +  +++
Sbjct: 274 FLCISLPIPVPHTRPLYVTVVYQGKCSHCMRVGVAVPLSGTVSRLRQAVAQETKIP-AQQ 332

Query: 460 LKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVK 500
           + + E+      R   D    L  I++ D + A+  P+L +
Sbjct: 333 IVLTEMYYDGFHRSFCDDDDDLEIIQESDSIFAFETPELFR 373



 Score = 45.1 bits (105), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 22/31 (70%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF 304
           G+ GL N GNTCFMN+ +QCL +T  FA Y 
Sbjct: 86  GVAGLKNHGNTCFMNAILQCLSNTELFAEYL 116


>gi|315051290|ref|XP_003175019.1| protein kinase subdomain-containing protein [Arthroderma gypseum CBS
            118893]
 gi|311340334|gb|EFQ99536.1| protein kinase subdomain-containing protein [Arthroderma gypseum CBS
            118893]
          Length = 1686

 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/197 (39%), Positives = 121/197 (61%), Gaps = 11/197 (5%)

Query: 632  RIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLR 691
            R+P      V+ +DW++   E Y+  F+ +  ++       KK R   ++L  CL+ F R
Sbjct: 1271 RLPYVKPGDVIVLDWNE---ETYDGVFVTSKRQLRSR----KKKRG--ITLDECLDEFGR 1321

Query: 692  EEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIH 751
            EE L   D WYCP+CKE R+ASKK +LW+ P++LV+HLKRFS +R  + K++  V FP+ 
Sbjct: 1322 EEILSENDAWYCPRCKEHRRASKKFELWKAPDILVMHLKRFSANRIFRDKIDAVVEFPL- 1380

Query: 752  DFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHIS-PI 810
            + +++  V         +Y+L A+ NHYGG+G GHYTA+ +   +  WY F+DSH++   
Sbjct: 1381 ELDMSGRVQMVEEGESMMYDLIAVDNHYGGLGGGHYTAYARNFVDGLWYEFNDSHVTMKR 1440

Query: 811  NEDDVKSAAAYVLFYRR 827
            +   V ++AAY+LFYRR
Sbjct: 1441 DPSSVVTSAAYLLFYRR 1457



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 116/383 (30%), Positives = 169/383 (44%), Gaps = 77/383 (20%)

Query: 184 QDILVEVLDNVNGT--NCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGW-SASKGTSRN 240
           Q  LV+V D    T  N K+SI   G     + +V+V   +      G W S +  +S N
Sbjct: 564 QRELVDVKDQTANTKYNGKASIHVIGLG---SDNVIVLEEQVGGPAGGEWLSETSRSSNN 620

Query: 241 HSSEISTSPNL------ASARDSDNTLGSSGVTTRG------ASVGLTGLLNLGNTCFMN 288
            +    T  N+       S+  S  T  +  + TRG       + G+TGL NLGNTC+MN
Sbjct: 621 LTVGAGTKANVQNRLKNKSSSGSGRTSPAPSIVTRGRRRKDGKARGVTGLSNLGNTCYMN 680

Query: 289 SAIQCLVHTPEFARYF-REDYRREINWQNPL---GMV----------------------- 321
           SA+QC+    E + YF   +Y++++N  NPL   G V                       
Sbjct: 681 SALQCVRSVEELSHYFLMGEYKKDLNPSNPLSHNGDVAKAYANLLHQIFDVQGSASFAPR 740

Query: 322 ----------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDA------DGRP 353
                                 E L FLLDGL EDLNR++ KPYI+  D+      D   
Sbjct: 741 NFKVTIGRYGPSFSGYGQQDSQEFLLFLLDGLQEDLNRIQKKPYIEKPDSTDEMVHDKAA 800

Query: 354 DEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTR 413
            +  AD  W  + ARNDS+I D+  G YKST+VCP C+KVS+ FDPF  L+L +    + 
Sbjct: 801 LQRFADRCWEIYKARNDSVITDLFSGMYKSTVVCPDCDKVSIIFDPFNNLTLQIPIENSW 860

Query: 414 TMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF 473
           +  +  F       P    V + K+   + + Q +    ++  +E L +AEI      + 
Sbjct: 861 SHKIMFFPL--HKPPVNIDVDMDKNSGIKAVKQFIAQKMNV-DAERLVMAEIYKSKFYKL 917

Query: 474 LD-DPLISLSTIKDDDHLAAYRV 495
            D    I+   I D D +A Y +
Sbjct: 918 FDHSQSIADHQISDADTIAMYEL 940


>gi|384494007|gb|EIE84498.1| hypothetical protein RO3G_09208 [Rhizopus delemar RA 99-880]
          Length = 837

 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 73/161 (45%), Positives = 106/161 (65%), Gaps = 9/161 (5%)

Query: 676 RTEP--LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFS 733
           RT P  ++LY CL+ F++EE L  +D W+CP+CK+  +ASK L + +LP+VL+IHLKRFS
Sbjct: 673 RTSPATVNLYQCLDYFVKEETLDDDDAWHCPRCKKLCRASKSLTISKLPDVLLIHLKRFS 732

Query: 734 YSRSMKHKLETFVNFPIHDFNLTKYV------ANKNSSRRQL-YELYALTNHYGGMGSGH 786
           +     +KLET V+ PI   +L+KYV       ++ S +    Y+LYA++NHYG +  GH
Sbjct: 733 FDGPFNNKLETMVDSPIRGLDLSKYVPSSMFPPDQPSEKSTFSYDLYAVSNHYGSLTGGH 792

Query: 787 YTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           YTA ++    N W+NFDD+ +S  +E  + S AAY LFY R
Sbjct: 793 YTACVRNGYRNEWHNFDDTRLSVCDESKIMSRAAYNLFYVR 833



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/204 (35%), Positives = 98/204 (48%), Gaps = 54/204 (26%)

Query: 271 ASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM--------- 320
            ++G TGL NLGNTC+MNS IQCL  T  FARYF    Y++ IN +N LG          
Sbjct: 479 GAIGGTGLKNLGNTCYMNSIIQCLSGTIPFARYFISGLYKQHINKENFLGTGGVLANEFA 538

Query: 321 --------------------------------------VELLAFLLDGLHEDLNRVKHKP 342
                                                  E L FLLDGLHED N +K +P
Sbjct: 539 TLLRSMWGANCNFISPVQFREAITQFSPQFKGSEQHDSQEFLNFLLDGLHEDCNLIKKRP 598

Query: 343 Y--IKSKDADGR----PDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVT 396
               +S + + R    PD + +   W  ++ RN S++V + QGQY+S L C  C+  S T
Sbjct: 599 SQPPESPEEEARFERLPDWKASAVAWEKYLERNSSVVVSLFQGQYRSRLTCLTCHTTSTT 658

Query: 397 FDPFMYLSLPLQATTTRTMTVTVF 420
           ++ FM LSLP+ AT T   TV ++
Sbjct: 659 YNSFMSLSLPIPATRTSPATVNLY 682


>gi|323449693|gb|EGB05579.1| hypothetical protein AURANDRAFT_38431 [Aureococcus anophagefferens]
          Length = 812

 Score =  144 bits (362), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/274 (34%), Positives = 130/274 (47%), Gaps = 56/274 (20%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARY-FREDYRREINWQNPLG----MV------- 321
           G TGL+NLGNTCFMNSA+QCL HTP    Y   E +  EIN  NPLG    MV       
Sbjct: 84  GATGLVNLGNTCFMNSALQCLSHTPLLRAYVLSEQFAAEINRANPLGSQGRMVDEFANVL 143

Query: 322 ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                               E L  +LD LHED+NRV  KPY++
Sbjct: 144 RMLWSDRYRSVAPSKFKRALARAKPQFAGNDQQDSQEFLNEMLDVLHEDVNRVVEKPYVE 203

Query: 346 SKDADGRPD---EEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMY 402
             D D       E  A + W  ++ RN S+IVD+ QGQ KS   C  C K SV F+PFM+
Sbjct: 204 EPDDDDVAKLTYEVAARDAWDRYLLRNRSVIVDLFQGQLKSEKQCCACGKKSVKFEPFMH 263

Query: 403 LSLPLQATTTRTMTVTVFT---SDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEE 459
           LS+PL +T  + +          +     + + V+VP+ G   DL   L  +  + ++ +
Sbjct: 264 LSVPLPSTQEKRLKHAASKKRPGEKQLRAAIFGVSVPRLGEVGDLKSALSEVTGVPRA-D 322

Query: 460 LKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAY 493
           + V ++  H   R L+D    L+ ++DDD + AY
Sbjct: 323 IAVGDVYRHRFARILEDDE-PLAAVRDDDVVVAY 355



 Score =  132 bits (332), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 64/152 (42%), Positives = 94/152 (61%), Gaps = 4/152 (2%)

Query: 680 LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
           + L  CL+AF +EE L   D W CPQCKE R A+ K++ W+LP++LVIH+KRF  S   +
Sbjct: 643 IPLSHCLDAFSKEETLSEADAWICPQCKEPRSATSKIEPWKLPDILVIHVKRFLCSAKWR 702

Query: 740 HKLETFVNFPIHDFNLTKYVANKNSSRRQ---LYELYALTNHYGGMGSGHYTAHIKL-LD 795
            K+ T V FP+   ++  +V  +  S ++    Y+L+A+TNH GGM  GHYT++++    
Sbjct: 703 EKIRTKVLFPLSALDMAPWVHEEARSLQRGAMTYDLFAVTNHLGGMTGGHYTSYVRADGG 762

Query: 796 ENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           + RW + DD  +       V + AAYVLFYRR
Sbjct: 763 DYRWLHVDDDVVEEAGPKSVVTDAAYVLFYRR 794


>gi|261195686|ref|XP_002624247.1| ubiquitin C-terminal hydrolase [Ajellomyces dermatitidis SLH14081]
 gi|239588119|gb|EEQ70762.1| ubiquitin C-terminal hydrolase [Ajellomyces dermatitidis SLH14081]
          Length = 1730

 Score =  144 bits (362), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 69/149 (46%), Positives = 102/149 (68%), Gaps = 2/149 (1%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            +SL  CL+ F +EE L   D WYCP+CKE R+ASKK +LW+ P++LV+HLKRFS +R  +
Sbjct: 1351 ISLDECLDEFGKEEILSENDAWYCPRCKEHRRASKKFELWKCPDILVMHLKRFSANRGFR 1410

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRW 799
             K++  V+FP+ + ++T  V      +  +Y+L A+ NHYGG+G GHYTA+ K    + W
Sbjct: 1411 DKIDALVDFPL-ELDMTGRVQMPEEGKSLIYDLIAVDNHYGGLGGGHYTAYAKNFINDTW 1469

Query: 800  YNFDDSHISPINED-DVKSAAAYVLFYRR 827
            Y ++DSH++  N    V ++AAY+LFYRR
Sbjct: 1470 YEYNDSHVTKKNNPASVVTSAAYLLFYRR 1498



 Score =  133 bits (335), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 86/262 (32%), Positives = 125/262 (47%), Gaps = 58/262 (22%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPL---GMV---- 321
           G   G+TGL NLGN+C+MNSA+QC+    E   YF +D YR+++N  NPL   G V    
Sbjct: 690 GRPRGVTGLSNLGNSCYMNSALQCVRSVEELTHYFLDDEYRKDLNPGNPLSHDGNVAKAY 749

Query: 322 -----------------------------------------ELLAFLLDGLHEDLNRVKH 340
                                                    E + FLLDGL EDLNR++ 
Sbjct: 750 ANLLHQLFDENGTSSFAPRQFKQTIGRYGPSFSGYGQQDSQEFVLFLLDGLQEDLNRIQK 809

Query: 341 KPYIKSKDA------DGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVS 394
           KPYI+  D+      +    +E A++ W  + ARNDS+I D+  G YKST+VCPVC+KVS
Sbjct: 810 KPYIEKPDSTDDMVSNSAALQEFANKCWEIYKARNDSVITDLFAGMYKSTVVCPVCDKVS 869

Query: 395 VTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSL 454
           + FDPF  L+L L      +  +  F     + P    V + K+   + L + +G    +
Sbjct: 870 IIFDPFSNLTLQLPIENLWSKEIFFFPL--HSRPVRVDVDIDKNASVKALKEYVGRRVGV 927

Query: 455 KQSEELKVAEIQNHSIQRFLDD 476
             +  L +AEI  H   +  ++
Sbjct: 928 -DTNRLVMAEIYKHKFYKMFEN 948


>gi|344300518|gb|EGW30839.1| hypothetical protein SPAPADRAFT_52038 [Spathaspora passalidarum
           NRRL Y-27907]
          Length = 1287

 Score =  144 bits (362), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 106/364 (29%), Positives = 168/364 (46%), Gaps = 76/364 (20%)

Query: 263 SSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM- 320
           ++G  +   S G  GL NLGNTC+MNSA+QCL+H PE   YF  + Y++E+N  NPLG  
Sbjct: 324 AAGAASTSTSGGHLGLSNLGNTCYMNSALQCLLHVPEINFYFYYNIYKQELNVNNPLGYH 383

Query: 321 -------------------------------------------------VELLAFLLDGL 331
                                                             E L++LLD L
Sbjct: 384 GNVANSFGSLLKQAFDKRGSGSGSISPRDFKSTIGRYSSMFSGYLQQDSQEFLSWLLDAL 443

Query: 332 HEDLNRVKHKPYIKSKDA------DGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTL 385
           HEDLNR+  KPY +  +       D +   E++   W  H+ARNDS+I D+  G Y+STL
Sbjct: 444 HEDLNRIHEKPYCEKPELNDDEINDSKAIIELSKTCWNQHLARNDSVITDLFTGLYQSTL 503

Query: 386 VCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVF------TSDGSALPSTYTVTVPKHG 439
           VCP C+K S+TFDPF  L+LPL  +     T T+       T  G+ +     V + K  
Sbjct: 504 VCPDCSKTSITFDPFNDLTLPLPISKKWYHTFTIVDLSPAETKTGTRI-MKLEVELNKTS 562

Query: 440 RCRDLIQVLGNICSLKQSEELKVAEIQNHS----IQR-FLDDPLISLS-TIKDDDHLAAY 493
              DL+  LGN      +  L + EI ++S     QR ++ +    +   I+D+D +  Y
Sbjct: 563 NFDDLLNYLGNFLKTPTT-NLFIYEIFHNSFYSDFQRDYIKNRFHPIGDIIRDNDEIIVY 621

Query: 494 RVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRD-DVISSGKIQSTVQ 552
            +P   +  + + + + ++  +     T      +G PL   ++++ + IS G+++  + 
Sbjct: 622 IIPHDPESDIIVPVFNAVENADKSYKVTN----IFGIPLFVVLNKEKEAISFGQVRKKLV 677

Query: 553 RMLS 556
            + S
Sbjct: 678 EVAS 681



 Score =  134 bits (336), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 66/165 (40%), Positives = 109/165 (66%), Gaps = 2/165 (1%)

Query: 664  EVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPE 723
            E+ +N    ++ R   +SLY C+ +F   E L   D+WYCP+CKE ++A+K + +W   +
Sbjct: 978  ELEQNRAHFERQRKAKISLYDCVRSFGTPEVLGEHDLWYCPRCKEHKRATKTIQIWSTGD 1037

Query: 724  VLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMG 783
            +L IHLKRF  +R+   K++  ++FPI+  +++ YV++   +   +Y+L A+ NHYGG+G
Sbjct: 1038 ILTIHLKRFHSARAFSDKIDILIDFPINGLDISSYVSDPIQT-DCVYDLIAVDNHYGGLG 1096

Query: 784  SGHYTAHIKLLDENRWYNFDDSHISPINE-DDVKSAAAYVLFYRR 827
             GHYTA +K   +N WY F+DS ++ I+  ++V + AAY+LFYRR
Sbjct: 1097 GGHYTASVKNFRDNNWYYFNDSRVTRIDSAEEVITNAAYLLFYRR 1141


>gi|194219144|ref|XP_001498764.2| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal
           hydrolase 31 [Equus caballus]
          Length = 1317

 Score =  144 bits (362), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 67/168 (39%), Positives = 97/168 (57%), Gaps = 21/168 (12%)

Query: 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKH 740
           +L  C + + +EE L P+D W CP CK+ +Q S  L LW LP+VL+IHLKRF      + 
Sbjct: 562 TLSQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRFRQEGDRRM 621

Query: 741 KLETFVNFPIHDFNLTKYVANKNSS-----------RRQ----------LYELYALTNHY 779
           KL+  V FP+   ++T +V  ++ S           RR           +Y+LYA+ NH+
Sbjct: 622 KLQNMVKFPLTGLDMTPHVVKRSQSSWSLPSHWSPWRRPYGLGRDPEDYIYDLYAVCNHH 681

Query: 780 GGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           G M  GHYTAH K   +  WY FDDS + P++E++V +  AY+LFY+R
Sbjct: 682 GTMQGGHYTAHCKNSVDGLWYCFDDSDVQPLSEEEVCTQTAYILFYQR 729



 Score = 70.5 bits (171), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 97/222 (43%), Gaps = 15/222 (6%)

Query: 290 AIQCLVHTPEFARYFREDYRR---EINWQNPLGMVELLAFLLDGLHEDLNRVKHKPYIKS 346
           A+  L +TP+ +R F+    +   +    +     E L +LLD +HEDLN        +S
Sbjct: 161 ALWTLEYTPQHSRDFKSIVSKNALQYRGNSQHDAQEFLLWLLDRVHEDLNHA----VKQS 216

Query: 347 KDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLP 406
                +P  E              + + ++ Q QY+S+L CP C K S TFDPF+ +SLP
Sbjct: 217 GQPPLKPPSETDMMPEGPSFPVCSTFVQELFQAQYRSSLTCPHCQKQSNTFDPFLCISLP 276

Query: 407 LQATTTRTMTVTVFTSDGSALPSTYTVTVPKHG---RCRDLIQVLGNICSLKQSEELKVA 463
           +    TR + VTV      +      V VP  G   R R+ + V   I     ++++ + 
Sbjct: 277 IPLPHTRPLYVTVVYQGKCSHCMRIGVAVPLSGTVARLREAVSVETKI----PTDQIVLT 332

Query: 464 EIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFL 505
           E+      R   D    L T+ + D + A+  P++ +    L
Sbjct: 333 EMYYDGFHRSFCD-TDDLETVHESDCIFAFETPEIFRPEGIL 373


>gi|327349181|gb|EGE78038.1| ubiquitin carboxyl-terminal hydrolase [Ajellomyces dermatitidis ATCC
            18188]
          Length = 1730

 Score =  144 bits (362), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 69/149 (46%), Positives = 102/149 (68%), Gaps = 2/149 (1%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            +SL  CL+ F +EE L   D WYCP+CKE R+ASKK +LW+ P++LV+HLKRFS +R  +
Sbjct: 1351 ISLDECLDEFGKEEILSENDAWYCPRCKEHRRASKKFELWKCPDILVMHLKRFSANRGFR 1410

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRW 799
             K++  V+FP+ + ++T  V      +  +Y+L A+ NHYGG+G GHYTA+ K    + W
Sbjct: 1411 DKIDALVDFPL-ELDMTGRVQMPEEGKSLIYDLIAVDNHYGGLGGGHYTAYAKNFINDTW 1469

Query: 800  YNFDDSHISPINED-DVKSAAAYVLFYRR 827
            Y ++DSH++  N    V ++AAY+LFYRR
Sbjct: 1470 YEYNDSHVTKKNNPASVVTSAAYLLFYRR 1498



 Score =  133 bits (335), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 86/262 (32%), Positives = 125/262 (47%), Gaps = 58/262 (22%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPL---GMV---- 321
           G   G+TGL NLGN+C+MNSA+QC+    E   YF +D YR+++N  NPL   G V    
Sbjct: 690 GRPRGVTGLSNLGNSCYMNSALQCVRSVEELTHYFLDDEYRKDLNPGNPLSHDGNVAKAY 749

Query: 322 -----------------------------------------ELLAFLLDGLHEDLNRVKH 340
                                                    E + FLLDGL EDLNR++ 
Sbjct: 750 ANLLHQLFDENGTSSFAPRQFKQTIGRYGPSFSGYGQQDSQEFVLFLLDGLQEDLNRIQK 809

Query: 341 KPYIKSKDA------DGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVS 394
           KPYI+  D+      +    +E A++ W  + ARNDS+I D+  G YKST+VCPVC+KVS
Sbjct: 810 KPYIEKPDSTDDMVSNSAALQEFANKCWEIYKARNDSVITDLFAGMYKSTVVCPVCDKVS 869

Query: 395 VTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSL 454
           + FDPF  L+L L      +  +  F     + P    V + K+   + L + +G    +
Sbjct: 870 IIFDPFSNLTLQLPIENLWSKEIFFFPL--HSRPVRVDVDIDKNASVKALKEYVGRRVGV 927

Query: 455 KQSEELKVAEIQNHSIQRFLDD 476
             +  L +AEI  H   +  ++
Sbjct: 928 -DTNRLVMAEIYKHKFYKMFEN 948


>gi|239610392|gb|EEQ87379.1| ubiquitin C-terminal hydrolase [Ajellomyces dermatitidis ER-3]
          Length = 1750

 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 69/149 (46%), Positives = 102/149 (68%), Gaps = 2/149 (1%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            +SL  CL+ F +EE L   D WYCP+CKE R+ASKK +LW+ P++LV+HLKRFS +R  +
Sbjct: 1371 ISLDECLDEFGKEEILSENDAWYCPRCKEHRRASKKFELWKCPDILVMHLKRFSANRGFR 1430

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRW 799
             K++  V+FP+ + ++T  V      +  +Y+L A+ NHYGG+G GHYTA+ K    + W
Sbjct: 1431 DKIDALVDFPL-ELDMTGRVQMPEEGKSLIYDLIAVDNHYGGLGGGHYTAYAKNFINDTW 1489

Query: 800  YNFDDSHISPINED-DVKSAAAYVLFYRR 827
            Y ++DSH++  N    V ++AAY+LFYRR
Sbjct: 1490 YEYNDSHVTKKNNPASVVTSAAYLLFYRR 1518



 Score =  133 bits (335), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 86/262 (32%), Positives = 125/262 (47%), Gaps = 58/262 (22%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPL---GMV---- 321
           G   G+TGL NLGN+C+MNSA+QC+    E   YF +D YR+++N  NPL   G V    
Sbjct: 710 GRPRGVTGLSNLGNSCYMNSALQCVRSVEELTHYFLDDEYRKDLNPGNPLSHDGNVAKAY 769

Query: 322 -----------------------------------------ELLAFLLDGLHEDLNRVKH 340
                                                    E + FLLDGL EDLNR++ 
Sbjct: 770 ANLLHQLFDENGTSSFAPRQFKQTIGRYGPSFSGYGQQDSQEFVLFLLDGLQEDLNRIQK 829

Query: 341 KPYIKSKDA------DGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVS 394
           KPYI+  D+      +    +E A++ W  + ARNDS+I D+  G YKST+VCPVC+KVS
Sbjct: 830 KPYIEKPDSTDDMVSNSAALQEFANKCWEIYKARNDSVITDLFAGMYKSTVVCPVCDKVS 889

Query: 395 VTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSL 454
           + FDPF  L+L L      +  +  F     + P    V + K+   + L + +G    +
Sbjct: 890 IIFDPFSNLTLQLPIENLWSKEIFFFPL--HSRPVRVDVDIDKNASVKALKEYVGRRVGV 947

Query: 455 KQSEELKVAEIQNHSIQRFLDD 476
             +  L +AEI  H   +  ++
Sbjct: 948 -DTNRLVMAEIYKHKFYKMFEN 968


>gi|68474276|ref|XP_718847.1| potential ubiquitin-specific protease [Candida albicans SC5314]
 gi|46440639|gb|EAK99943.1| potential ubiquitin-specific protease [Candida albicans SC5314]
          Length = 1372

 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 106/349 (30%), Positives = 161/349 (46%), Gaps = 70/349 (20%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM------------ 320
           G  GL N+GNTC+MNSA+QCL+H PE   YF  + Y++E+N+ NPLG             
Sbjct: 325 GHLGLSNMGNTCYMNSALQCLLHVPEINYYFFYNIYKKELNFDNPLGYHGDVANAFGSLL 384

Query: 321 -------------------------------------VELLAFLLDGLHEDLNRVKHKPY 343
                                                 ELL++LLD LHEDLNR+  KPY
Sbjct: 385 KQAFDHVKNSSSISPREFKSTIGRYSSMFSGYLQQDSQELLSWLLDALHEDLNRIHQKPY 444

Query: 344 IKSKDA------DGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTF 397
            +  +       D +   ++A+  W  H ARNDS+I+D+  G Y+STL+CP C K S+TF
Sbjct: 445 CEKPELKDDEIDDPQAITKLANTCWNQHKARNDSVIIDLFTGLYQSTLICPDCGKKSITF 504

Query: 398 DPFMYLSLPLQATTTRTMTVTVFT-SDGSALPS---TYTVTVPKHGRCRDLIQVLGNICS 453
           DPF  L+LPL  +     T T+   S+   +P       V + K     DL+  L N  +
Sbjct: 505 DPFNDLTLPLPISKKWYHTFTIVDLSNQGVIPERIMKLEVELNKTSNFDDLLSYLSNFLN 564

Query: 454 LKQSEELKVAEIQNHSIQRF-LD---DPLISLS-TIKDDDHLAAYRVPKLVKKAVFLQLI 508
           +  +E       QN     F LD   +  + +S  I+D D +  Y VP      + + + 
Sbjct: 565 VPSTELFAYEIFQNAIYSDFQLDYTKNKFLPISDIIRDTDDVIVYIVPHNPAVDIIVPVF 624

Query: 509 HRLQEQEPGAAQTTSQWKAYGTPLVSSISRD-DVISSGKIQSTVQRMLS 556
           + +++    A  +      +G PL   ++++ DV S G I+  +   +S
Sbjct: 625 NAVED----ADSSYQMVNFFGIPLFVVMNKEVDVNSFGFIRKKLLETVS 669



 Score =  136 bits (343), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 77/203 (37%), Positives = 121/203 (59%), Gaps = 13/203 (6%)

Query: 637  STSIVVYVDWSQKLLEK----------YNTHFLENLLEVFKNGPVTKKARTEPLSLYTCL 686
            S   V+  DW +++ +K           N   L N  E+ KN    ++ R   ++L  CL
Sbjct: 960  SKDTVLLCDWDKEIYQKCFGDKELQAWENISNLPNP-ELEKNRAHFERQRKAKITLSDCL 1018

Query: 687  EAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFV 746
            ++F   E L   D+WYCP+C E ++A+K + LW   ++L IHLKRF  +R+   K++  V
Sbjct: 1019 KSFSTPEILGEHDLWYCPRCTEHKRATKTIQLWSTGDILTIHLKRFHSARAFSDKIDVLV 1078

Query: 747  NFPIHDFNLTKYVANKNSSRRQ-LYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDS 805
            +FPI   +++ YVAN + +    LY+L A+ NHYGG+G GHYTA +K   +++WY F+DS
Sbjct: 1079 DFPIEGLDISSYVANTDLTPEDCLYDLIAVDNHYGGLGGGHYTASVKNFRDDKWYYFNDS 1138

Query: 806  HISPINE-DDVKSAAAYVLFYRR 827
             ++ IN   +V + +AY+LFYRR
Sbjct: 1139 RVTEINNPQEVVANSAYLLFYRR 1161


>gi|68474445|ref|XP_718762.1| potential ubiquitin-specific protease [Candida albicans SC5314]
 gi|46440549|gb|EAK99854.1| potential ubiquitin-specific protease [Candida albicans SC5314]
          Length = 1354

 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 106/349 (30%), Positives = 161/349 (46%), Gaps = 70/349 (20%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM------------ 320
           G  GL N+GNTC+MNSA+QCL+H PE   YF  + Y++E+N+ NPLG             
Sbjct: 325 GHLGLSNMGNTCYMNSALQCLLHVPEINYYFFYNIYKKELNFDNPLGYHGDVANAFGSLL 384

Query: 321 -------------------------------------VELLAFLLDGLHEDLNRVKHKPY 343
                                                 ELL++LLD LHEDLNR+  KPY
Sbjct: 385 KQAFDHVKNSSSISPREFKSTIGRYSSMFSGYLQQDSQELLSWLLDALHEDLNRIHQKPY 444

Query: 344 IKSKDA------DGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTF 397
            +  +       D +   ++A+  W  H ARNDS+I+D+  G Y+STL+CP C K S+TF
Sbjct: 445 CEKPELKDDEIDDPQAITKLANTCWNQHKARNDSVIIDLFTGLYQSTLICPDCGKKSITF 504

Query: 398 DPFMYLSLPLQATTTRTMTVTVFT-SDGSALPS---TYTVTVPKHGRCRDLIQVLGNICS 453
           DPF  L+LPL  +     T T+   S+   +P       V + K     DL+  L N  +
Sbjct: 505 DPFNDLTLPLPISKKWYHTFTIVDLSNQGVIPERIMKLEVELNKTSNFDDLLSYLSNFLN 564

Query: 454 LKQSEELKVAEIQNHSIQRF-LD---DPLISLS-TIKDDDHLAAYRVPKLVKKAVFLQLI 508
           +  +E       QN     F LD   +  + +S  I+D D +  Y VP      + + + 
Sbjct: 565 VPSTELFAYEIFQNAIYSDFQLDYTKNKFLPISDIIRDTDDVIVYIVPHNPAVDIIVPVF 624

Query: 509 HRLQEQEPGAAQTTSQWKAYGTPLVSSISRD-DVISSGKIQSTVQRMLS 556
           + +++    A  +      +G PL   ++++ DV S G I+  +   +S
Sbjct: 625 NAVED----ADSSYQMVNFFGIPLFVVMNKEVDVNSFGFIRKKLLETVS 669



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 77/203 (37%), Positives = 121/203 (59%), Gaps = 13/203 (6%)

Query: 637  STSIVVYVDWSQKLLEK----------YNTHFLENLLEVFKNGPVTKKARTEPLSLYTCL 686
            S   V+  DW +++ +K           N   L N  E+ KN    ++ R   ++L  CL
Sbjct: 960  SKDTVLLCDWDKEIYQKCFGDKELQAWENISNLPNP-ELEKNRAHFERQRKAKITLSDCL 1018

Query: 687  EAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFV 746
            ++F   E L   D+WYCP+C E ++A+K + LW   ++L IHLKRF  +R+   K++  V
Sbjct: 1019 KSFSTPEILGEHDLWYCPRCTEHKRATKTIQLWSTGDILTIHLKRFHSARAFSDKIDVLV 1078

Query: 747  NFPIHDFNLTKYVANKNSSRRQ-LYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDS 805
            +FPI   +++ YVAN + +    LY+L A+ NHYGG+G GHYTA +K   +++WY F+DS
Sbjct: 1079 DFPIEGLDISSYVANTDLTPEDCLYDLIAVDNHYGGLGGGHYTASVKNFRDDKWYYFNDS 1138

Query: 806  HISPINE-DDVKSAAAYVLFYRR 827
             ++ IN   +V + +AY+LFYRR
Sbjct: 1139 RVTEINNPQEVVANSAYLLFYRR 1161


>gi|453085067|gb|EMF13110.1| UCH-domain-containing protein [Mycosphaerella populorum SO2202]
          Length = 1550

 Score =  143 bits (361), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 103/342 (30%), Positives = 156/342 (45%), Gaps = 78/342 (22%)

Query: 224 SLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASV------GLTG 277
           +LSI      SK ++ N+S   S +P               G+TTRG ++      G  G
Sbjct: 466 ALSIVKSNLNSKASTANNSRATSPAP--------------GGMTTRGRALKNGKTRGTVG 511

Query: 278 LLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGM---------------- 320
           L NLGNTC+MNSA+QC+    E A YF  + Y+++IN  NPLG                 
Sbjct: 512 LQNLGNTCYMNSALQCIRSVEELAIYFYTKKYKKDINNGNPLGYHGAMANAYQTVIQGIY 571

Query: 321 --------------------------------VELLAFLLDGLHEDLNRVKHKPYIKSKD 348
                                            E L+FL+D +HEDLNR+  KPY+++ D
Sbjct: 572 GNNTGGSFSPRDFKNTLGRHQPMFSGYGQQDSQEFLSFLVDAIHEDLNRIDKKPYVENPD 631

Query: 349 ADGR----PD--EEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMY 402
           +D      P+   E+ + Y  NH  RNDSI +D+  G YK+ + CP CNKVSVTFDP+  
Sbjct: 632 SDDSKVHDPEYIRELGETYQKNHKLRNDSIAMDLFGGFYKNKMECPDCNKVSVTFDPYSL 691

Query: 403 LSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKV 462
           +++ L         +T     G   P  + + + K+   + L +VL        +  + +
Sbjct: 692 VTVQLPMEIAFQHDITYIPLHGR--PLLHHIDIDKNSPIKALKEVLAKKHPGADASRMWM 749

Query: 463 AEIQNHSIQRFLDDP-LISLSTIKDDDHLAAYRVPKLVKKAV 503
            E+ NH I +  DD  +I+ S I  +DHL  + + +  + A 
Sbjct: 750 VEVYNHKIYKVYDDSTVIAESGILANDHLFIFELEQTPRNAA 791



 Score =  143 bits (361), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 68/149 (45%), Positives = 102/149 (68%), Gaps = 1/149 (0%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            ++L  C +   R E L  ++ WYC +CKE R+A+K L++W LP++LV+HLKRF  +RS +
Sbjct: 1207 VNLDECFDVTSRSEVLSEDNAWYCNRCKELRRATKTLEIWTLPDILVVHLKRFGGNRSFR 1266

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRW 799
             K++  V++PI   ++T  V  K   +  +Y+L+A+ NHYGG+G GHYTA  K   + +W
Sbjct: 1267 DKVDLLVDYPIQGLDMTDRVGVKEDGKEYIYDLFAVDNHYGGLGGGHYTAMAKNFYDGQW 1326

Query: 800  YNFDDSHISPI-NEDDVKSAAAYVLFYRR 827
            Y+++DS    I NED+V SAAAY+LFYRR
Sbjct: 1327 YDYNDSSTHKISNEDNVHSAAAYLLFYRR 1355


>gi|326537233|emb|CCA61015.1| ubiquitin specific peptidase 31 [Equus caballus]
          Length = 1356

 Score =  143 bits (361), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 67/168 (39%), Positives = 97/168 (57%), Gaps = 21/168 (12%)

Query: 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKH 740
           +L  C + + +EE L P+D W CP CK+ +Q S  L LW LP+VL+IHLKRF      + 
Sbjct: 601 TLSQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRFRQEGDRRM 660

Query: 741 KLETFVNFPIHDFNLTKYVANKNSS-----------RRQ----------LYELYALTNHY 779
           KL+  V FP+   ++T +V  ++ S           RR           +Y+LYA+ NH+
Sbjct: 661 KLQNMVKFPLTGLDMTPHVVKRSQSSWSLPSHWSPWRRPYGLGRDPEDYIYDLYAVCNHH 720

Query: 780 GGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           G M  GHYTAH K   +  WY FDDS + P++E++V +  AY+LFY+R
Sbjct: 721 GTMQGGHYTAHCKNSVDGLWYCFDDSDVQPLSEEEVCTQTAYILFYQR 768



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 108/298 (36%), Gaps = 75/298 (25%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDYRREI--------------------N 313
           G+ GL N GNTCFMN+ +QCL +T  FA Y      R                       
Sbjct: 124 GVAGLRNHGNTCFMNATLQCLSNTELFAEYLALGQYRAARPEPPPEPEPEPEPEPPAGRG 183

Query: 314 WQNPLGMVELLAFLLDGL------------------------------------------ 331
            Q P  + E LA L+  L                                          
Sbjct: 184 AQGPGEVTEQLAHLVRALWTLEYTPQHSRDFKSIVSKNALQYRGNSQHDAQEFLLWLLDR 243

Query: 332 -HEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVC 390
            HEDLN        +S     +P  E              + + ++ Q QY+S+L CP C
Sbjct: 244 VHEDLNHA----VKQSGQPPLKPPSETDMMPEGPSFPVCSTFVQELFQAQYRSSLTCPHC 299

Query: 391 NKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHG---RCRDLIQV 447
            K S TFDPF+ +SLP+    TR + VTV      +      V VP  G   R R+ + V
Sbjct: 300 QKQSNTFDPFLCISLPIPLPHTRPLYVTVVYQGKCSHCMRIGVAVPLSGTVARLREAVSV 359

Query: 448 LGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFL 505
              I     ++++ + E+      R   D    L T+ + D + A+  P++ +    L
Sbjct: 360 ETKI----PTDQIVLTEMYYDGFHRSFCD-TDDLETVHESDCIFAFETPEIFRPEGIL 412


>gi|37747599|gb|AAH58994.1| Usp32 protein, partial [Mus musculus]
          Length = 846

 Score =  143 bits (361), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 79/176 (44%), Positives = 109/176 (61%), Gaps = 6/176 (3%)

Query: 322 ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQY 381
           ELLAFLLDGLHEDLNRV  KPY++ KD+DGRPD EVA E W NH+ RN SI+VD+  GQ 
Sbjct: 70  ELLAFLLDGLHEDLNRVHEKPYVELKDSDGRPDWEVAAEAWDNHLRRNRSIVVDLFHGQL 129

Query: 382 KSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRC 441
           +S + C  C  +SV FDPF +LSLPL   +   + +TV   DG+  P  Y + +    + 
Sbjct: 130 RSQVKCKTCGHISVRFDPFNFLSLPLPMDSYMHLEITVIKLDGTT-PIRYGLRLNMDEKY 188

Query: 442 RDLIQVLGNICSLKQSEELKVAEIQNHSIQRF-LDDPLISLSTIKDDDHLAAYRVP 496
             L + L ++C LK SE++  AE+ + +I+ F  D+  + LS       L A+ +P
Sbjct: 189 TGLKKQLSDLCGLK-SEQILFAEVHSSNIKNFPQDNQKVRLSV---SGFLCAFEIP 240



 Score = 90.5 bits (223), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 75/129 (58%), Gaps = 2/129 (1%)

Query: 641 VVYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPED 699
            + VDW    L  +Y T   E ++E  ++   +++A+ EP++L +CL AF  EE L   +
Sbjct: 436 CIAVDWDPTALHLRYQTS-QERVVEEHESVEQSRRAQAEPINLDSCLRAFTSEEELGENE 494

Query: 700 MWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYV 759
           M+YC +CK    A+KKLDLWRLP +L+IHLKRF +      K +  V FP   F+ + ++
Sbjct: 495 MYYCSKCKTHCLATKKLDLWRLPPILIIHLKRFQFVNGRWIKSQKIVKFPRESFDPSAFL 554

Query: 760 ANKNSSRRQ 768
             ++ +  Q
Sbjct: 555 VPRDPTLCQ 563



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 39/61 (63%), Gaps = 1/61 (1%)

Query: 767 RQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYR 826
           + +Y LYA++ H G +G GHY  + K  +  +WY ++DS    ++ D++ + +AY+LFY 
Sbjct: 749 KPIYNLYAISCHSGILGGGHYVTYAKNPN-CKWYCYNDSSCKELHPDEIDTDSAYILFYE 807

Query: 827 R 827
           +
Sbjct: 808 Q 808


>gi|157125302|ref|XP_001654280.1| ubiquitin specific protease [Aedes aegypti]
 gi|108873655|gb|EAT37880.1| AAEL010184-PA [Aedes aegypti]
          Length = 1801

 Score =  143 bits (361), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 102/274 (37%), Positives = 131/274 (47%), Gaps = 54/274 (19%)

Query: 274  GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV----------- 321
            G TGL NLGNTCFMN+A+Q L +T    +YF R+ +  E+N  N LG             
Sbjct: 751  GATGLHNLGNTCFMNAALQVLFNTQPLTQYFIRQMHMYELNMANKLGTKGQLAMRYAELL 810

Query: 322  ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                                ELL +LLD LHEDLNRV  KPY +
Sbjct: 811  REVWTASQRSIAPLKLRFCVTKHAPQFSGGGQHDSQELLDWLLDALHEDLNRVMEKPYSE 870

Query: 346  SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
             KD+DGR D  VA E W  H ARN SIIVD+  GQ KS + C  C + SV FDPF  LSL
Sbjct: 871  LKDSDGRADVVVAAEAWNQHHARNQSIIVDLFYGQLKSKVTCTGCGRDSVRFDPFSLLSL 930

Query: 406  PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEI 465
            PL         V V   DGS +P  Y + +    +  DL + L ++C+L   E + + E+
Sbjct: 931  PLPVENYTYCEVLVTMLDGS-VPVKYGLRLNSEMKYWDLKKQLSDLCAL-DPELMLICEL 988

Query: 466  QNHSIQRFL-DDPLISLSTIKDDDHLAAYRVPKL 498
             N  I+  L ++  I  ST  +   L  Y +PK 
Sbjct: 989  SNSQIRCILVNEKKIEPSTACE---LYVYELPKF 1019



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 82/142 (57%), Gaps = 6/142 (4%)

Query: 624  SVEGDKTIRIPS----SSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEP 679
            S++G ++   PS    ++ +I + +DW    L        E L    ++  + +K +TEP
Sbjct: 1419 SLDGMQSSPTPSMRSINTNNIQIAIDWDPTALHLRYQSTRERLWTEHESVAICRKQQTEP 1478

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            + L  CL AF  EE L  E  ++C  CK+++ A+KKL +W+LP VL++HLKRF++  +  
Sbjct: 1479 VDLDHCLRAFTSEEKL--EQWYHCSHCKQKKPATKKLQIWKLPPVLIVHLKRFNFVNNKW 1536

Query: 740  HKLETFVNFPIHDFNLTKYVAN 761
             K +  VNFP  +F+ T Y+A+
Sbjct: 1537 VKSQKVVNFPYDEFDPTPYLAS 1558



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 1/55 (1%)

Query: 64  TLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLL 118
           TL++ RD+ L+P  +W  L  WYGG   L R+VI   LS  ++ +E+YPL L++L
Sbjct: 538 TLVQHRDFELVPDSLWKALSQWYGGPLPLPRQVIQP-LSTGDVELELYPLNLRIL 591


>gi|238878907|gb|EEQ42545.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 1362

 Score =  143 bits (361), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 106/349 (30%), Positives = 161/349 (46%), Gaps = 70/349 (20%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM------------ 320
           G  GL N+GNTC+MNSA+QCL+H PE   YF  + Y++E+N+ NPLG             
Sbjct: 325 GHLGLSNMGNTCYMNSALQCLLHVPEINYYFFYNIYKKELNFDNPLGYHGDVANAFGSLL 384

Query: 321 -------------------------------------VELLAFLLDGLHEDLNRVKHKPY 343
                                                 ELL++LLD LHEDLNR+  KPY
Sbjct: 385 KQAFDHVKNSSSISPREFKSTIGRYSSMFSGYLQQDSQELLSWLLDALHEDLNRIHQKPY 444

Query: 344 IKSKDA------DGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTF 397
            +  +       D +   ++A+  W  H ARNDS+I+D+  G Y+STL+CP C K S+TF
Sbjct: 445 CEKPELKDDEIDDPQAITKLANTCWNQHKARNDSVIIDLFTGLYQSTLICPDCGKKSITF 504

Query: 398 DPFMYLSLPLQATTTRTMTVTVFT-SDGSALPS---TYTVTVPKHGRCRDLIQVLGNICS 453
           DPF  L+LPL  +     T T+   S+   +P       V + K     DL+  L N  +
Sbjct: 505 DPFNDLTLPLPISKKWYHTFTIVDLSNQGVIPERIMKLEVELNKTSNFDDLLSYLSNFLN 564

Query: 454 LKQSEELKVAEIQNHSIQRF-LD---DPLISLS-TIKDDDHLAAYRVPKLVKKAVFLQLI 508
           +  +E       QN     F LD   +  + +S  I+D D +  Y VP      + + + 
Sbjct: 565 VPSTELFAYEIFQNAIYSDFQLDYTKNKFLPISDIIRDTDDVIVYIVPHNPAVDIIVPVF 624

Query: 509 HRLQEQEPGAAQTTSQWKAYGTPLVSSISRD-DVISSGKIQSTVQRMLS 556
           + +++    A  +      +G PL   ++++ DV S G I+  +   +S
Sbjct: 625 NAVED----ADSSYQMVNFFGIPLFVVMNKEVDVNSFGFIRKKLLETVS 669



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 77/203 (37%), Positives = 121/203 (59%), Gaps = 13/203 (6%)

Query: 637  STSIVVYVDWSQKLLEK----------YNTHFLENLLEVFKNGPVTKKARTEPLSLYTCL 686
            S   V+  DW +++ +K           N   L N  E+ KN    ++ R   ++L  CL
Sbjct: 960  SKDTVLLCDWDKEIYQKCFGDKELQAWENISNLPNP-ELEKNRAHFERQRKAKITLSDCL 1018

Query: 687  EAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFV 746
            ++F   E L   D+WYCP+C E ++A+K + LW   ++L IHLKRF  +R+   K++  V
Sbjct: 1019 KSFSTPEILGEHDLWYCPRCTEHKRATKTIQLWSTGDILTIHLKRFHSARAFSDKIDVLV 1078

Query: 747  NFPIHDFNLTKYVANKNSSRRQ-LYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDS 805
            +FPI   +++ YVAN + +    LY+L A+ NHYGG+G GHYTA +K   +++WY F+DS
Sbjct: 1079 DFPIEGLDISSYVANTDLTPEDCLYDLIAVDNHYGGLGGGHYTASVKNFRDDKWYYFNDS 1138

Query: 806  HISPINE-DDVKSAAAYVLFYRR 827
             ++ IN   +V + +AY+LFYRR
Sbjct: 1139 RVTEINNPQEVVANSAYLLFYRR 1161


>gi|387219077|gb|AFJ69247.1| ubiquitinspecific protease [Nannochloropsis gaditana CCMP526]
          Length = 879

 Score =  143 bits (360), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 85/225 (37%), Positives = 106/225 (47%), Gaps = 51/225 (22%)

Query: 275 LTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------------ 321
           L GL NLGNTCF+N+ +QCL HTP    YF    Y R++N  N LG              
Sbjct: 40  LVGLHNLGNTCFLNAPLQCLSHTPILTEYFLSRAYLRDVNLHNILGTQGRCAQLYATLLQ 99

Query: 322 -------------------------------------ELLAFLLDGLHEDLNRVKHKPYI 344
                                                ELLAFLL  L EDLNRVK K YI
Sbjct: 100 ELWAETGGVPRSVNPRAIRDLIGAQGLFTGHDQHDAQELLAFLLSTLSEDLNRVKKKSYI 159

Query: 345 KSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLS 404
           +  D+DGRPD E+AD +W NH  R  S++  +  GQYK+T  CP CN VS  F+PF  L 
Sbjct: 160 EQPDSDGRPDHELADIWWHNHFKRELSLVAALFTGQYKTTTACPTCNYVSARFEPFTVLQ 219

Query: 405 LPLQATTTRTMTVTVFTSDGS-ALPSTYTVTVPKHGRCRDLIQVL 448
           LPL   T R ++V    +D     P   +V V K G   D+ + +
Sbjct: 220 LPLPEETHRNISVLYVPADQEIQTPVHLSVQVSKQGSMADVKEAV 264



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 96/197 (48%), Gaps = 44/197 (22%)

Query: 673 KKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQ-ASKKLDLWRLPEVLVIHLKR 731
           ++   E LSL  CL+  +REE L   D  YC +CK  +  A +K +LWRLP +L+IHLKR
Sbjct: 620 RREEAEGLSLQACLDVCMREEALA--DEVYCSRCKAHQSGARRKEELWRLPPLLIIHLKR 677

Query: 732 FSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQL---------------------- 769
           F +++  + KL   V FP+ D +L  Y+A+  ++                          
Sbjct: 678 FQFTQQSRRKLNARVRFPLDDLDLAPYLASAATAGAGHAGKEHVSKASHSSSSLNAPPPT 737

Query: 770 -------------------YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPI 810
                              Y LYA+ +H G + +GHY + I++    +WY F+D+ +  +
Sbjct: 738 PSLASAGSSCCLSSASSSRYTLYAIIHHVGALQAGHYVSTIRVNQGGKWYCFNDARVEEV 797

Query: 811 NEDDVKSAAAYVLFYRR 827
             +++ + +AY+LFY R
Sbjct: 798 PAEELVNPSAYILFYIR 814


>gi|254580861|ref|XP_002496416.1| ZYRO0C17908p [Zygosaccharomyces rouxii]
 gi|186703867|emb|CAQ43553.1| Ubiquitin carboxyl-terminal hydrolase 12 [Zygosaccharomyces rouxii]
 gi|238939307|emb|CAR27483.1| ZYRO0C17908p [Zygosaccharomyces rouxii]
          Length = 1204

 Score =  143 bits (360), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 68/155 (43%), Positives = 104/155 (67%)

Query: 673  KKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF 732
            ++   + ++L+ CL+ F + E L   D WYCP CKE RQA+K++ LW  P+VL+IHLKRF
Sbjct: 873  QQEEEKKITLHDCLKLFSKREVLGMNDSWYCPSCKEHRQATKQIQLWDTPDVLLIHLKRF 932

Query: 733  SYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIK 792
               RS   K++  V+FPI   +++ Y+ NK   R  +Y+L A+ NHYGG+G GHYTA+ K
Sbjct: 933  ENLRSFSDKIDEVVHFPITGLDMSPYLVNKGDPRGTIYDLVAVDNHYGGLGGGHYTAYAK 992

Query: 793  LLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
             +D+++WY FDDS ++    +   +++AY+LFY R
Sbjct: 993  NVDDSKWYYFDDSRVTETTPERGIASSAYLLFYVR 1027



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/354 (29%), Positives = 152/354 (42%), Gaps = 79/354 (22%)

Query: 272 SVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPL-----------G 319
           S G+TGL NLGNTC+MNSA+QCLVH PE   YF  + +  EIN  NPL           G
Sbjct: 289 SSGITGLYNLGNTCYMNSALQCLVHIPELRDYFLYNCFEDEINCNNPLGYQGYVARAFSG 348

Query: 320 MV--------------------------------------------ELLAFLLDGLHEDL 335
           +V                                            E + FLLDGLHEDL
Sbjct: 349 LVQNLFGCKTLSSGSTLTPAYSPTGFKSTIGHFNSMFSGYMQQDSQEFITFLLDGLHEDL 408

Query: 336 NRVKHKPYIKSKDADGRPD-------EEVADEYWANHIARNDSIIVDVCQGQYKSTLVCP 388
           NR+  KPYI+        D       + +A++ W  H+ RNDS+I D+  G Y+STL CP
Sbjct: 409 NRIVDKPYIEKPSLSPEDDSNDFNVIKRLAEDTWKLHLQRNDSVITDLFVGLYESTLQCP 468

Query: 389 VCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVL 448
            CN VS+TFDP+  L+LPL   T     V VF  +    P    V + K    ++L + +
Sbjct: 469 ECNNVSITFDPYNDLTLPLPVNTVWHCKVKVFPQNSP--PCVLEVEMGKSSTYQNLKEYV 526

Query: 449 GNICSLKQSEELKVAEIQNHSIQRFLDDP------LISLSTIKDDDHLAAYRVPKLVKKA 502
               ++ +   L   EI +H      + P      L     I + D +  Y +       
Sbjct: 527 AKYANI-EPRNLYGCEIFSHQFYNNYESPESNSQFLPIQELISESDDVIFYEIVASQNDT 585

Query: 503 VFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLS 556
           +   L  R++E            + +G P    +S ++ ++ G I+  +++  S
Sbjct: 586 IVPILNSRIEE-------GFKNPRLFGVPFFIVLSPEERVNPGAIRYKLEKYFS 632


>gi|301620627|ref|XP_002939670.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 [Xenopus
            (Silurana) tropicalis]
          Length = 1059

 Score =  143 bits (360), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 62/149 (41%), Positives = 100/149 (67%), Gaps = 2/149 (1%)

Query: 677  TEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSR 736
            T   SL  C++AF +EE L   + + C  CK +R A+KK+++W+LP +L++HLKRFS+  
Sbjct: 901  TSKCSLQDCIKAFAKEEKLTDSNRFDCSNCKTQRVATKKIEIWKLPPILLVHLKRFSFEG 960

Query: 737  SMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDE 796
              + KL+++V+FP+   +L++YV    + +   Y L+ ++NHYGG+  GHYTA+ K   +
Sbjct: 961  RWRQKLQSYVDFPLESLDLSQYVIGPKNVK--TYNLFGVSNHYGGLDGGHYTAYCKNALK 1018

Query: 797  NRWYNFDDSHISPINEDDVKSAAAYVLFY 825
             RW+ FDD  +S I+   VK++AAY+LFY
Sbjct: 1019 QRWFKFDDHDVSEISVSSVKTSAAYMLFY 1047



 Score =  122 bits (306), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 74/191 (38%), Positives = 93/191 (48%), Gaps = 49/191 (25%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV------- 321
           GA   LTGL NLGNTC+MNS +QCL +TP    YF  + Y+  IN  N LG         
Sbjct: 712 GAGPALTGLRNLGNTCYMNSILQCLCNTPHLIEYFNNNFYQAHINRSNLLGHKGEVAEEF 771

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNR-VKH 340
                                                   ELL FL+DGLHEDLN+   +
Sbjct: 772 GCIMRALWTGQYKYISPKDFKITIGKINEQFAGYTHQDSQELLLFLMDGLHEDLNKKADN 831

Query: 341 KPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPF 400
           +   K ++ D   D + AD  W  H   N+SIIV + QGQ+KST+ C  C K S TF+ F
Sbjct: 832 RKRQKEENNDHLSDSQAADSAWYKHKQLNESIIVALFQGQFKSTVQCLTCQKKSRTFEAF 891

Query: 401 MYLSLPLQATT 411
           MYLSLPL +T+
Sbjct: 892 MYLSLPLPSTS 902


>gi|301126059|ref|XP_002909821.1| ubiquitin-specific protease, putative [Phytophthora infestans
           T30-4]
 gi|262103690|gb|EEY61742.1| ubiquitin-specific protease, putative [Phytophthora infestans
           T30-4]
          Length = 258

 Score =  143 bits (360), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 69/155 (44%), Positives = 101/155 (65%), Gaps = 7/155 (4%)

Query: 680 LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRS-M 738
           +SL  C   F++ E L   ++WYC +C E RQA K +++WRLP+VLV+ LKRF Y    +
Sbjct: 88  ISLDDCFRNFVKPETLDQANLWYCSKCNEHRQARKTMEMWRLPDVLVLSLKRFEYRNEIL 147

Query: 739 KHKLETFVNFPIHDFNLTKYVANKNSSRRQL-YELYALTNHYGGMGSGHYTAHIK-LLDE 796
           + KL+ +V+FP+   +++ Y   K+  +  L Y+L+A++NHYG MG GHYTA  K   DE
Sbjct: 148 RDKLDVYVDFPLEGLDMSPYCLEKSDDKDHLSYDLFAVSNHYGSMGFGHYTAFAKSWKDE 207

Query: 797 NR----WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
                 WY+FDDS ++P   + VKS AAY+LFY+R
Sbjct: 208 GEMYPGWYSFDDSLVAPAMPNQVKSNAAYILFYKR 242


>gi|340503315|gb|EGR29915.1| ubiquitin carboxyl-terminal hydrolase family protein, putative
           [Ichthyophthirius multifiliis]
          Length = 752

 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 82/241 (34%), Positives = 113/241 (46%), Gaps = 52/241 (21%)

Query: 241 HSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEF 300
           HS     +       D+DN      ++ RG    + GL NLGNTCFMNSA+QC+ +T   
Sbjct: 100 HSRVCDLADQDTEEEDNDNPYQFQQLSVRG----ICGLNNLGNTCFMNSALQCMSNTEYL 155

Query: 301 ARYFREDY-RREINWQNPLGM--------------------------------------- 320
             YF + Y + EIN  NPLG                                        
Sbjct: 156 TYYFLKKYFKNEINLTNPLGTNGKLVKQYSQFIKNLWISTENVFQPLGIKRAIASLQNMF 215

Query: 321 --------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSI 372
                    E L+F+LDGLHEDLNR+K K + +  D++G  D  V+ + W NH+ RN SI
Sbjct: 216 AGYQQHDSQEFLSFILDGLHEDLNRIKQKAFTEQIDSNGEYDNIVSKKSWINHLKRNQSI 275

Query: 373 IVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYT 432
           IVD+ QGQ+KS + CP C K SVTFDPF+  +LP+     + + +     +  A+    T
Sbjct: 276 IVDIMQGQFKSKVKCPECGKKSVTFDPFLTCTLPIPHQQLKNIDLYYIFVNNRAVSCAET 335

Query: 433 V 433
            
Sbjct: 336 F 336



 Score =  136 bits (342), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 105/164 (64%), Gaps = 12/164 (7%)

Query: 674 KARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFS 733
           + ++E  ++Y C   F  +E L  ++ WYC  CK+ ++A+KK+ ++R P++L+IHLKRF 
Sbjct: 590 QQQSEKTTIYDCFNLFQLKEQLGEDNEWYCSNCKKHQRATKKMKIYRSPQILIIHLKRFK 649

Query: 734 YSRSMK---HKLETFVNFPIHDFNLTKYVANK-------NSSRRQLYELYALTNHYGGMG 783
            +  +     KL   ++FP+ + ++T YV  K        ++ + LY LY + NH+GG+G
Sbjct: 650 NNAGIMWKGGKLTKIIDFPLENLDITDYVIEKEPPSYYYQNNGKLLYNLYGVVNHFGGIG 709

Query: 784 SGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            GHYTA+   L+E+ WY FDDS ++ +N+ D+ + A+Y+LFY++
Sbjct: 710 GGHYTAYC--LNEDNWYCFDDSSVNKVNKKDICTEASYILFYKK 751


>gi|145529976|ref|XP_001450771.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124418393|emb|CAK83374.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1153

 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 76/209 (36%), Positives = 104/209 (49%), Gaps = 48/209 (22%)

Query: 268 TRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGM------ 320
            + ++ G+ GL NLGNTCFMNS++QCL +  E   Y     Y  ++N +NPLG       
Sbjct: 541 VKNSAKGICGLSNLGNTCFMNSSLQCLSNVTELTEYMIYNTYLEDLNEKNPLGTGGRLAC 600

Query: 321 -----------------------------------------VELLAFLLDGLHEDLNRVK 339
                                                     ELL++LLDGLHED+NR+K
Sbjct: 601 NYAELLKELYESTSTSVAPWNVKKVIGQQAPQFNGYSQQDSQELLSYLLDGLHEDMNRIK 660

Query: 340 HKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDP 399
            KPYI   +  G+ D+E AD YW NH  RNDS I ++  GQ+KS + CP CN VS+TFDP
Sbjct: 661 KKPYIPEVEYKGQSDQEFADIYWDNHKKRNDSKITELFTGQFKSRVECPECNFVSITFDP 720

Query: 400 FMYLSLPLQATTTRTMTVTVFTSDGSALP 428
           F+ +SLP+ +         +   D +  P
Sbjct: 721 FVTISLPIPSKEYVQFQFYLIFRDSNQTP 749



 Score =  106 bits (264), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 107/169 (63%), Gaps = 13/169 (7%)

Query: 669  GPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIH 728
            GP   ++  + +SL  CL  F +EE L   + WYC +CK+ ++A K++ +++ P+++++H
Sbjct: 984  GP--NQSLQQTISLNDCLNQFCQEEVLGAGNEWYCSKCKKHQKAKKQMQIYKAPQIMILH 1041

Query: 729  LKRFSYSRSMKH----------KLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNH 778
            LKRF  +R  +           K+  FV+FP+ +F++  ++  K S +  +Y+L+A++NH
Sbjct: 1042 LKRFRSTRVTQFYGTYSVGGVTKIVQFVDFPLENFDIQPFILEKESQQPYVYDLFAISNH 1101

Query: 779  YGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            YGGMG GHYTA+ K    N W++F+DS +  +  + V + AAYVLFYRR
Sbjct: 1102 YGGMGGGHYTAYAKNPMYNAWFDFNDSQVKELRSNPV-TDAAYVLFYRR 1149


>gi|149408831|ref|XP_001507996.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform 1
            [Ornithorhynchus anatinus]
          Length = 1116

 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 71/151 (47%), Positives = 100/151 (66%), Gaps = 1/151 (0%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A T   SL  CL  F +EE L   + +YC  CK RR + KK+++W+LP VL++HLKRFSY
Sbjct: 955  ASTSKCSLQDCLRLFSKEEKLTDNNRFYCSHCKTRRDSLKKIEIWKLPPVLLVHLKRFSY 1014

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
                K KL+T V+FP+   +L++YV    SS ++ Y L++++NHYGG+  GHYTA+ K  
Sbjct: 1015 EGRWKQKLQTSVDFPLESLDLSQYVIGSKSSLKR-YNLFSVSNHYGGLDGGHYTAYCKNA 1073

Query: 795  DENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
               RW+ FDD  +S I+   VKS+AAY+LFY
Sbjct: 1074 ARQRWFKFDDHEVSDISVSSVKSSAAYILFY 1104



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/190 (38%), Positives = 94/190 (49%), Gaps = 48/190 (25%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------- 321
           GA   LTGL NLGNTC+MNS +QCL + P  A YF R  Y+ +IN  N LG         
Sbjct: 769 GAGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNFYQEDINRSNLLGHKGEVAEEF 828

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELL FL+DGLHEDLN+  ++
Sbjct: 829 GIIMKALWTGQYRYISPKDFKITIGKINDQFSGYSQQDSQELLLFLMDGLHEDLNKADNR 888

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
              K ++ D   D   A+  W  H   N+SIIV + QGQ+KST+ C  C+K S TF+ FM
Sbjct: 889 KRHKEENNDHLDDCRAAELAWHKHKQLNESIIVALFQGQFKSTVQCLTCHKRSRTFEAFM 948

Query: 402 YLSLPLQATT 411
           YLSLPL +T+
Sbjct: 949 YLSLPLASTS 958


>gi|150864435|ref|XP_001383247.2| hypothetical protein PICST_69820 [Scheffersomyces stipitis CBS 6054]
 gi|149385691|gb|ABN65218.2| peptidase C19, ubiquitin C-terminal hydrolase 2 [Scheffersomyces
            stipitis CBS 6054]
          Length = 1340

 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 76/198 (38%), Positives = 120/198 (60%), Gaps = 15/198 (7%)

Query: 641  VVYVDWSQKLLEKYNTHFLENLL----------EVFKNGPVTKKARTEPLSLYTCLEAFL 690
            ++  DW   + E+    F+EN            E+ KN    ++ R   +SLY CL++F 
Sbjct: 952  ILLCDWDYPIFEQC---FVENQTWENIPVLPNPELEKNRAKIERQRKSKISLYDCLKSFS 1008

Query: 691  REEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPI 750
              E L   D+WYCP+CK+ ++A+K + +W   ++L IHLKRF  +R+   K+E  V+FPI
Sbjct: 1009 TPEILGEHDLWYCPRCKDHKRATKTIQVWSTGDILTIHLKRFHSARAFSDKIEMVVDFPI 1068

Query: 751  HDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPI 810
               +++ Y+AN   +   LY+L A+ NHYGG+G GHYTA +K   +  WY F+DS ++ I
Sbjct: 1069 EGLDMSSYIANP-EAENSLYDLIAVDNHYGGLGGGHYTASVKNFRDGNWYYFNDSRVTSI 1127

Query: 811  NE-DDVKSAAAYVLFYRR 827
            N  ++V ++AAY+LFYR+
Sbjct: 1128 NNPEEVITSAAYLLFYRK 1145



 Score =  139 bits (350), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 109/355 (30%), Positives = 162/355 (45%), Gaps = 81/355 (22%)

Query: 272 SVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLG----------- 319
           S G  GL NLGNTC+MNSA+QCL+H  E   YF  + Y+RE+N+ NPLG           
Sbjct: 319 SSGHLGLSNLGNTCYMNSALQCLLHVAEVNYYFLYNLYKRELNFDNPLGNHGDIANAFGN 378

Query: 320 ---------------------------------------MVELLAFLLDGLHEDLNRVKH 340
                                                    E L++LLD LHEDLNR+  
Sbjct: 379 LLKQAFDPSSSKDSSITPREFKSTIGRYSSMFSGYMQQDSQEFLSWLLDALHEDLNRIHK 438

Query: 341 KPYIKSKDADGRPDEEVADEY---------WANHIARNDSIIVDVCQGQYKSTLVCPVCN 391
           KPY +  +     DEE+ D           W  H  RNDS+I D+  G Y+STL+CP C+
Sbjct: 439 KPYCEKPELK---DEEINDPKAIIKLSETCWNQHKMRNDSVITDLFTGLYQSTLLCPDCS 495

Query: 392 KVSVTFDPFMYLSLPLQATTTRTMTVTVFT-SDGSALPST----YTVTVPKHGRCRDLIQ 446
           K S+TFDPF  L+LPL  +     T T+   SDG  L  T      V + K     DL+ 
Sbjct: 496 KTSITFDPFNDLTLPLPISKKWYHTFTIVDLSDGGILRGTRIMKLEVELNKTSNFDDLLT 555

Query: 447 VLGNICSLKQSEELKVAEIQNHSIQRF-LD---DPLISLSTI-KDDDHLAAYRVPKLVKK 501
            L +   ++ +        +N     F LD   +  + +S I +D D +  Y VP   + 
Sbjct: 556 YLSDFLKVETTHLFLYEIFRNSFYSDFQLDYNRNKFMPISDIVRDSDEVHVYYVPYNPET 615

Query: 502 AVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRD-DVISSGKIQSTVQRML 555
            + + + + +++ +     T    + +G PL  +++++ DV S G I+   Q++L
Sbjct: 616 DIIIPVYNTVEDPDKSYKVT----ETFGIPLFVTLNKESDVYSFGTIR---QKLL 663


>gi|363737748|ref|XP_413830.3| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform 2 [Gallus
            gallus]
          Length = 1125

 Score =  142 bits (359), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 71/152 (46%), Positives = 102/152 (67%), Gaps = 3/152 (1%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A T   +L  CL  F +EE L   + +YC  CK RR + KK+++W+LP VL++HLKRFSY
Sbjct: 964  ASTSKCTLQECLRLFSKEEKLTDNNRFYCSHCKTRRDSLKKIEIWKLPPVLLVHLKRFSY 1023

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYV-ANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKL 793
                K KL+T V+FP+   +L++YV   KN+ +R  Y L++++NHYGG+  GHYTA+ K 
Sbjct: 1024 DGRWKQKLQTSVDFPLETLDLSQYVIGPKNNLKR--YNLFSVSNHYGGLDGGHYTAYCKN 1081

Query: 794  LDENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
              + RW+ FDD  +S I+   VKS+AAY+LFY
Sbjct: 1082 ASKQRWFKFDDHEVSEISASSVKSSAAYILFY 1113



 Score =  125 bits (315), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 73/194 (37%), Positives = 98/194 (50%), Gaps = 48/194 (24%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV------- 321
           G+   LTGL NLGNTC+MNS +QCL + P  A YF ++ Y+ +IN  N LG         
Sbjct: 778 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLAEYFNKNLYQDDINRSNFLGHKGEVAEEF 837

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELL FL+DGLHEDLN+  ++
Sbjct: 838 GVIMKALWTGQYKYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNR 897

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
              K ++ D   D + A+  W  H   N+SIIV + QGQ+KST+ C  C+K S TF+ FM
Sbjct: 898 KRYKEENNDHLDDLKAAELAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFM 957

Query: 402 YLSLPLQATTTRTM 415
           YLSLPL +T+  T+
Sbjct: 958 YLSLPLASTSKCTL 971


>gi|449268039|gb|EMC78912.1| Ubiquitin carboxyl-terminal hydrolase 8 [Columba livia]
          Length = 1110

 Score =  142 bits (359), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 71/152 (46%), Positives = 102/152 (67%), Gaps = 3/152 (1%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A T   +L  CL  F +EE L   + +YC  CK RR + KK+++W+LP VL++HLKRFSY
Sbjct: 949  ASTSKCTLQECLRLFSKEEKLTDNNRFYCSHCKTRRDSLKKIEIWKLPPVLLVHLKRFSY 1008

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYV-ANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKL 793
                K KL+T V+FP+   +L++YV   KN+ +R  Y L++++NHYGG+  GHYTA+ K 
Sbjct: 1009 DGRWKQKLQTSVDFPLETLDLSQYVIGPKNNLKR--YNLFSVSNHYGGLDGGHYTAYCKN 1066

Query: 794  LDENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
              + RW+ FDD  +S I+   VKS+AAY+LFY
Sbjct: 1067 ASKQRWFKFDDHEVSEISASSVKSSAAYILFY 1098



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/194 (38%), Positives = 96/194 (49%), Gaps = 48/194 (24%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------- 321
           G+   LTGL NLGNTC+MNS +QCL + P  A YF R  Y+ +IN  N LG         
Sbjct: 763 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNLYQDDINRSNFLGHKGEVAEEF 822

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELL FL+DGLHEDLN+  ++
Sbjct: 823 GVIMKALWTGQYKYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNR 882

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
              K ++ D   D   A+  W  H   N+SIIV + QGQ+KST+ C  C+K S TF+ FM
Sbjct: 883 KRYKEENNDHLDDLRAAELAWHKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFM 942

Query: 402 YLSLPLQATTTRTM 415
           YLSLPL +T+  T+
Sbjct: 943 YLSLPLASTSKCTL 956


>gi|363737746|ref|XP_003641901.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform 1 [Gallus
            gallus]
          Length = 1116

 Score =  142 bits (359), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 71/152 (46%), Positives = 102/152 (67%), Gaps = 3/152 (1%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A T   +L  CL  F +EE L   + +YC  CK RR + KK+++W+LP VL++HLKRFSY
Sbjct: 955  ASTSKCTLQECLRLFSKEEKLTDNNRFYCSHCKTRRDSLKKIEIWKLPPVLLVHLKRFSY 1014

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYV-ANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKL 793
                K KL+T V+FP+   +L++YV   KN+ +R  Y L++++NHYGG+  GHYTA+ K 
Sbjct: 1015 DGRWKQKLQTSVDFPLETLDLSQYVIGPKNNLKR--YNLFSVSNHYGGLDGGHYTAYCKN 1072

Query: 794  LDENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
              + RW+ FDD  +S I+   VKS+AAY+LFY
Sbjct: 1073 ASKQRWFKFDDHEVSEISASSVKSSAAYILFY 1104



 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 73/194 (37%), Positives = 98/194 (50%), Gaps = 48/194 (24%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV------- 321
           G+   LTGL NLGNTC+MNS +QCL + P  A YF ++ Y+ +IN  N LG         
Sbjct: 769 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLAEYFNKNLYQDDINRSNFLGHKGEVAEEF 828

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELL FL+DGLHEDLN+  ++
Sbjct: 829 GVIMKALWTGQYKYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNR 888

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
              K ++ D   D + A+  W  H   N+SIIV + QGQ+KST+ C  C+K S TF+ FM
Sbjct: 889 KRYKEENNDHLDDLKAAELAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFM 948

Query: 402 YLSLPLQATTTRTM 415
           YLSLPL +T+  T+
Sbjct: 949 YLSLPLASTSKCTL 962


>gi|154282199|ref|XP_001541912.1| hypothetical protein HCAG_04010 [Ajellomyces capsulatus NAm1]
 gi|150412091|gb|EDN07479.1| hypothetical protein HCAG_04010 [Ajellomyces capsulatus NAm1]
          Length = 1549

 Score =  142 bits (359), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 72/157 (45%), Positives = 105/157 (66%), Gaps = 4/157 (2%)

Query: 672  TKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKR 731
            T+K R   +SL  CL+ F +EE L   D WYCP+C+E R+ASKK +LW+ P++LV+HLKR
Sbjct: 1163 TRKKRG--ISLGECLDEFGKEEILSENDAWYCPRCREHRRASKKFELWKCPDILVMHLKR 1220

Query: 732  FSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHI 791
            FS +R  + K++  V+FP+ + +++  V      +   YEL A+ NHYGG+G GHYTA+ 
Sbjct: 1221 FSANRGFRDKIDALVDFPL-ELDMSGRVQMPEEGKSLQYELIAVDNHYGGLGGGHYTAYA 1279

Query: 792  KLLDENRWYNFDDSHISPINED-DVKSAAAYVLFYRR 827
            K   +  WY ++DSH+S  N    V ++AAY+LFYRR
Sbjct: 1280 KNFFDGCWYEYNDSHVSKKNNPASVVTSAAYLLFYRR 1316



 Score =  135 bits (341), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 87/262 (33%), Positives = 127/262 (48%), Gaps = 58/262 (22%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPL---GMV---- 321
           G S G+TGL NLGN+C+MNSA+QC+    E  +YF +D YR+++N  NPL   G V    
Sbjct: 511 GRSPGVTGLSNLGNSCYMNSALQCVRSVEELTQYFLQDEYRKDLNPGNPLSHDGNVAKAY 570

Query: 322 -----------------------------------------ELLAFLLDGLHEDLNRVKH 340
                                                    E + FLLDGL EDLNR++ 
Sbjct: 571 ANLLHQLYDDNGTSSFAPRQFKQTIGRYGPSFSGYGQQDSQEFVLFLLDGLQEDLNRIQK 630

Query: 341 KPYIKSKDA------DGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVS 394
           KPYI+  D+      +    +E A++ W  + ARNDS+I D+  G YKST+VCPVC+KVS
Sbjct: 631 KPYIEKPDSTDDMVGNNAALQEFANKCWEIYKARNDSVITDLFAGMYKSTVVCPVCDKVS 690

Query: 395 VTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSL 454
           + FDPF  L+L L      +  +  F     + P    V + K+   + L + +G    +
Sbjct: 691 IIFDPFSNLTLQLPIENLWSKEIFFFPL--HSRPIRVAVDIDKNASIKALKEYVGQRVGV 748

Query: 455 KQSEELKVAEIQNHSIQRFLDD 476
             +  L +AEI  H   +  ++
Sbjct: 749 P-TNRLVMAEIYKHKFYKMFEN 769


>gi|255730030|ref|XP_002549940.1| hypothetical protein CTRG_04237 [Candida tropicalis MYA-3404]
 gi|240133009|gb|EER32566.1| hypothetical protein CTRG_04237 [Candida tropicalis MYA-3404]
          Length = 1324

 Score =  142 bits (358), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 108/352 (30%), Positives = 161/352 (45%), Gaps = 84/352 (23%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM-------- 320
           G   G  GL NLGNTC+MNSA+QCL+H PE   YF  + Y++E+N  NPLG         
Sbjct: 310 GQGGGHLGLNNLGNTCYMNSALQCLLHVPEINYYFFYNIYKKELNTDNPLGYHGDVANAF 369

Query: 321 -----------------------------------------VELLAFLLDGLHEDLNRVK 339
                                                     ELL++LLD LHEDLNR++
Sbjct: 370 GSLLKQAFDHAKNSSSIAPREFKSTIGRYSSMFSGYLQQDSQELLSWLLDALHEDLNRIQ 429

Query: 340 HKPYIKSKDADGRPDE--------EVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCN 391
            KPY +  +   + DE         +AD  W  H ARNDS+I+D+  G Y+STL+CP C 
Sbjct: 430 QKPYCEKPEL--KDDEINNPQAIMRLADTCWNQHKARNDSVIIDLFTGLYQSTLICPDCG 487

Query: 392 KVSVTFDPFMYLSLPLQATTTRTMTVTVFT-SDGSALPS---TYTVTVPKHGRCRDLIQV 447
           K S+TFDPF  L+LPL  +     T T+   S+   +P       V + K     DL+  
Sbjct: 488 KTSITFDPFNDLTLPLPISKKWYHTFTIVDLSNPGVIPKRIMKLEVELNKTSNFDDLLGY 547

Query: 448 LGNICSLKQSEELKVAEIQN---------HSIQRFLDDPLISLSTIKDDDHLAAYRVPKL 498
           L N   +   +       QN         +S  +F+  P+  +  I+D D +  Y +P  
Sbjct: 548 LSNFLKVASKDLFLYELFQNAIYSDFQLDYSKNKFM--PISDI--IRDTDDVVVYVIPHN 603

Query: 499 VKKAVFLQLIHRLQEQEPGAAQTTSQW-KAYGTPLVSSISRD-DVISSGKIQ 548
            +  V + + + +++     A T+ Q    +G PL   ++++ D+ S G I+
Sbjct: 604 PETDVIVPVFNAVED-----ADTSYQMANFFGIPLFVVLNKEVDLNSFGFIR 650



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 69/179 (38%), Positives = 111/179 (62%), Gaps = 16/179 (8%)

Query: 651  LEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERR 710
            LEK   HF              ++ R   ++L  CL++F   E L   D+WYCP CK+ +
Sbjct: 972  LEKSKAHF--------------ERQRKAKITLQDCLKSFSTPEVLGEHDLWYCPNCKDHK 1017

Query: 711  QASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKN-SSRRQL 769
            +A+K + LW   ++L IHLKRF  +R+   K++  V+FPI   ++++YVAN + +    +
Sbjct: 1018 RATKTIQLWSTGDILTIHLKRFHSARAFSDKIDVLVDFPIEGLDMSQYVANPSITVDDSI 1077

Query: 770  YELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPI-NEDDVKSAAAYVLFYRR 827
            Y+L A+ NHYGG+G GHYTA +K   +++WY F+DS ++ I N ++V + +AY+LFYR+
Sbjct: 1078 YDLIAVDNHYGGLGGGHYTASVKNFRDHKWYYFNDSRVTEIPNPEEVVANSAYLLFYRK 1136


>gi|340959623|gb|EGS20804.1| ubiquitin carboxyl-terminal hydrolase-like protein [Chaetomium
            thermophilum var. thermophilum DSM 1495]
          Length = 2887

 Score =  142 bits (358), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 80/200 (40%), Positives = 121/200 (60%), Gaps = 14/200 (7%)

Query: 642  VYVDWSQKLLE-KYNTHFLENLLEVFKNGPV--------TKKARTE----PLSLYTCLEA 688
            + V+W++  LE  + +         F N PV         +KARTE     ++L  CL+ 
Sbjct: 2371 IMVEWTESSLEWVFGSEESSQGARTFVNLPVLDDPTLDAKRKARTERKRRGITLDDCLDE 2430

Query: 689  FLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNF 748
            F  EE L   D WYCP+CKE  +A+KK DLW+ P++LV+HLKRFS     + KL+  V+F
Sbjct: 2431 FESEEVLSENDCWYCPRCKEHVRATKKFDLWKTPDILVVHLKRFSSHGWRRDKLDILVDF 2490

Query: 749  PIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHIS 808
            PI   +LT+ V ++   ++ +Y+L A+ NHYGG+G GHYTA+ K   + +WY ++D+ +S
Sbjct: 2491 PIEGLDLTRRVIDQEPGKQYIYDLIAVDNHYGGLGGGHYTAYAKNFFDGQWYEYNDASVS 2550

Query: 809  PINE-DDVKSAAAYVLFYRR 827
              ++   + S AAY+LFYRR
Sbjct: 2551 KTHDLSRMVSPAAYLLFYRR 2570



 Score =  136 bits (342), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 92/274 (33%), Positives = 124/274 (45%), Gaps = 58/274 (21%)

Query: 270  GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLG--------- 319
            G ++G  GL NLGNTC+MNSA+QCL    E  +YF   + ++EIN  NPL          
Sbjct: 1756 GRTMGCVGLQNLGNTCYMNSALQCLRSVEELTKYFLTHEAKKEINPDNPLSHNGDVAMAY 1815

Query: 320  ---------------------------------------MVELLAFLLDGLHEDLNRVKH 340
                                                     E L FLLDGL EDLNR+K 
Sbjct: 1816 SRLLDEIYKDPTPASVAPRHFKSIIGRYAPAFSGYGQQDTQEFLGFLLDGLQEDLNRIKK 1875

Query: 341  KPYIKSKDA------DGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVS 394
            KPYI+  D+      +    +E+AD+ W     R+DS+I D+  G YKSTLVCP C+KVS
Sbjct: 1876 KPYIEKPDSTDDMINNPAAIKEMADKVWDITKKRDDSVIADLFTGMYKSTLVCPQCDKVS 1935

Query: 395  VTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSL 454
            +TFDPF  L+LPL  +   T  V  +  + +  P    V + K+   R L Q +     +
Sbjct: 1936 ITFDPFNNLTLPLPISNVWTHKVKYYPLNDA--PVEINVDMDKNSTIRALKQFISARVGV 1993

Query: 455  KQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDD 488
               E L   E       +F +D  I    I+  D
Sbjct: 1994 P-VERLFAGEEFQSKFFKFYEDRGIVAEVIQKSD 2026


>gi|410895963|ref|XP_003961469.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 31-like [Takifugu
           rubripes]
          Length = 1304

 Score =  142 bits (358), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 115/221 (52%), Gaps = 31/221 (14%)

Query: 634 PSSSTSIVVYVDWSQK----LLEKYNTHFLENLLEVFKNGPVTKKARTEP--LSLYTCLE 687
           P     + + V+W ++    L ++    ++ +   V       K+   +P   SL  C +
Sbjct: 518 PGGPPHVKIVVEWDKETKDYLFKRTEDEYIPDAESVRH----VKEQHQQPQTCSLAQCFQ 573

Query: 688 AFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVN 747
            + +EE L P+D W CP CK+ +Q S KL LW LP++L++HLKRF      + K++  V 
Sbjct: 574 LYTKEEQLAPDDAWRCPHCKQLQQGSIKLSLWTLPDILILHLKRFRQDGDRRMKIQNMVK 633

Query: 748 FPIHDFNLTKYVANKNSS-----------RRQ----------LYELYALTNHYGGMGSGH 786
           FP+   ++  ++  ++ S           RR           LY+LYA+ NH+G M  GH
Sbjct: 634 FPLIGMDMAPHMVKRSQSSWSLPSHWSPWRRPYGMSRDPEDYLYDLYAVCNHHGTMQGGH 693

Query: 787 YTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           YTAH K   + +WY FDDS + P++ED+V     Y+LFY+R
Sbjct: 694 YTAHCKNSIDGQWYCFDDSDVHPMSEDEVCKQTGYILFYQR 734



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 100/214 (46%), Gaps = 9/214 (4%)

Query: 290 AIQCLVHTPEFARYFREDYRR---EINWQNPLGMVELLAFLLDGLHEDLNRVKHKPYIKS 346
           A+    +TP+ +R F+    +   +    +     E L +LLD +HEDLN + H P I+ 
Sbjct: 164 ALWTFEYTPQHSRDFKNMVSKSAIQFKGNSQHDAQEFLLWLLDRVHEDLNHIVH-PDIRP 222

Query: 347 KDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLP 406
           +    +P  E  +    + +    S + ++ Q QY+S+L CP C K S TFDPF+ +SLP
Sbjct: 223 Q----KPPVEEQNAPEGSPLPAPGSFVQELFQAQYRSSLTCPHCQKQSNTFDPFLCISLP 278

Query: 407 LQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQ 466
           +    TR + VTV      +      V VP  G    L + +     +  ++++ + E+ 
Sbjct: 279 IPVPHTRPLYVTVVYQGKCSNCMRVGVAVPLSGTMSRLRKAVAQETKIP-AQQIVLTEMY 337

Query: 467 NHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVK 500
                R   D    L  I++ D + A+  P+L +
Sbjct: 338 YDGFHRSFCDDDEDLDVIQESDSIFAFETPELFR 371



 Score = 45.1 bits (105), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 25/37 (67%), Gaps = 1/37 (2%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFR-EDYR 309
           G+ GL N GNTCFMN+ +QCL +T  FA Y   E +R
Sbjct: 86  GVAGLKNHGNTCFMNAILQCLSNTELFAEYLALEQFR 122


>gi|326926643|ref|XP_003209508.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like [Meleagris
            gallopavo]
          Length = 1124

 Score =  142 bits (358), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 71/152 (46%), Positives = 102/152 (67%), Gaps = 3/152 (1%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A T   +L  CL  F +EE L   + +YC  CK RR + KK+++W+LP VL++HLKRFSY
Sbjct: 963  ASTSKCTLQECLRLFSKEEKLTDNNRFYCSHCKTRRDSLKKIEIWKLPPVLLVHLKRFSY 1022

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYV-ANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKL 793
                K KL+T V+FP+   +L++YV   KN+ +R  Y L++++NHYGG+  GHYTA+ K 
Sbjct: 1023 DGRWKQKLQTSVDFPLETLDLSQYVIGPKNNLKR--YNLFSVSNHYGGLDGGHYTAYCKN 1080

Query: 794  LDENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
              + RW+ FDD  +S I+   VKS+AAY+LFY
Sbjct: 1081 ASKQRWFKFDDHEVSEISASSVKSSAAYILFY 1112



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/194 (38%), Positives = 95/194 (48%), Gaps = 48/194 (24%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------- 321
           G+   LTGL NLGNTC+MNS +QCL + P  A YF R  Y  +IN  N LG         
Sbjct: 777 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLAEYFNRNLYHDDINRSNFLGHKGEVAEEF 836

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELL FL+DGLHEDLN+  ++
Sbjct: 837 GVIMKALWTGQYKYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNR 896

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
              K ++ D   D   A+  W  H   N+SIIV + QGQ+KST+ C  C+K S TF+ FM
Sbjct: 897 KRYKEENNDHLDDLRAAELAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFM 956

Query: 402 YLSLPLQATTTRTM 415
           YLSLPL +T+  T+
Sbjct: 957 YLSLPLASTSKCTL 970


>gi|145502154|ref|XP_001437056.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124404203|emb|CAK69659.1| unnamed protein product [Paramecium tetraurelia]
          Length = 946

 Score =  142 bits (358), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 81/210 (38%), Positives = 106/210 (50%), Gaps = 48/210 (22%)

Query: 256 DSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINW 314
           DSD+           +  G  GL NLGNTCFMNS IQC+ +T     Y   + Y+++IN 
Sbjct: 314 DSDDETMDKLQRIEKSMDGKVGLQNLGNTCFMNSGIQCIGNTFPIREYLLSNQYKQDINE 373

Query: 315 QNPLGMV-----------------------------------------------ELLAFL 327
            N LG                                                 EL+ +L
Sbjct: 374 LNTLGTKGELAQKFAHLLRRMWYAERTPIPPFSLKRAIGKFQPQFQGFQQHDSQELITYL 433

Query: 328 LDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVC 387
           LDGL+EDL R+K KPY++ KD DGRPD EVA E W     RNDSIIVD   GQYKSTL C
Sbjct: 434 LDGLNEDLCRIKQKPYVERKDYDGRPDFEVAKESWEQFKLRNDSIIVDNLYGQYKSTLRC 493

Query: 388 PVCNKVSVTFDPFMYLSLPLQATTTRTMTV 417
           P CNK+S+TFDP++ +++ +   TT+ + +
Sbjct: 494 PNCNKISITFDPYLMVNVSIPQNTTKKLEI 523



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 57/88 (64%), Gaps = 1/88 (1%)

Query: 675 ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
           A  + + L  CL+   + E L  E+ WYC QCK+  +A K +++++ P++L+ HLKRF  
Sbjct: 836 ATEKSMKLTECLKFSEQPEQLDEENTWYCNQCKDHVRAFKVMEIYKTPKILIFHLKRFKN 895

Query: 735 S-RSMKHKLETFVNFPIHDFNLTKYVAN 761
           S +  K KLET ++FPI +F++ ++V N
Sbjct: 896 SNKFFKSKLETLIDFPIENFDIREFVQN 923


>gi|401406492|ref|XP_003882695.1| Ubiquitin carboxyl-terminal hydrolase, related [Neospora caninum
           Liverpool]
 gi|325117111|emb|CBZ52663.1| Ubiquitin carboxyl-terminal hydrolase, related [Neospora caninum
           Liverpool]
          Length = 1108

 Score =  142 bits (358), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 81/187 (43%), Positives = 99/187 (52%), Gaps = 50/187 (26%)

Query: 271 ASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV-------- 321
           AS G+ GL NLGNTCF+NSA+QCL      + YF    +  +IN +N +G          
Sbjct: 324 ASGGVCGLANLGNTCFLNSAVQCLSKVLPLSYYFLSGRFVADINEENVMGTQGRLARAYH 383

Query: 322 ---------------------------------------ELLAFLLDGLHEDLNRVKHKP 342
                                                  EL+AFLLDGLHEDLNR+K KP
Sbjct: 384 ATLRDMWFGGDSPLAPRDLKAAVGRVREEFLGYNQQDSQELIAFLLDGLHEDLNRIKKKP 443

Query: 343 YIKSKDADG--RPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPF 400
           Y +SK   G  + D EVA+  W  H   NDS+IVD+ QGQY+S L CP C K+SVTFDPF
Sbjct: 444 YYESKIEGGPEKSDAEVAELSWQRHKEINDSVIVDLFQGQYRSRLECPACGKISVTFDPF 503

Query: 401 MYLSLPL 407
           MYLSLP+
Sbjct: 504 MYLSLPV 510



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 71/170 (41%), Positives = 99/170 (58%), Gaps = 17/170 (10%)

Query: 669  GPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIH 728
            GPV  +  T+   +  CL  F  +E L  E+MWYC  CKE  QA KKLDLW++P++L++H
Sbjct: 938  GPVEVQPNTD---ISDCLRLFSEQERLDIENMWYCSSCKEHVQAYKKLDLWKMPKILILH 994

Query: 729  LKRF-SYSRSMKHKLETFVNFPIHD---FNLTKYVA--------NKNSSRRQLYELYALT 776
            LKRF + SR  + K+ T V FP       ++T Y+          K+     LYEL A+ 
Sbjct: 995  LKRFHNISRFTRSKIGTKVTFPYKAGDYLDMTPYILPESLEMMHAKDQGFAPLYELVAVN 1054

Query: 777  NHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYR 826
             H G +G GHY A+ KL    RWY+F+DS +  ++ED   S+ AY+LFYR
Sbjct: 1055 VHSGELGGGHYFAYAKL--RGRWYDFNDSWVQSVSEDSCHSSDAYMLFYR 1102


>gi|145537628|ref|XP_001454525.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124422291|emb|CAK87128.1| unnamed protein product [Paramecium tetraurelia]
          Length = 472

 Score =  142 bits (358), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 78/189 (41%), Positives = 105/189 (55%), Gaps = 49/189 (25%)

Query: 269 RGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPL---GMV--- 321
           +  S GL GL NLGNTC++N+AIQCL +T     YF+++ +  E+N +NPL   G +   
Sbjct: 45  QNKSCGLIGLQNLGNTCYINAAIQCLSNTQPLTEYFQQNLHNHELNIENPLSSRGQITNA 104

Query: 322 ------------------------------------------ELLAFLLDGLHEDLNRVK 339
                                                     ELLAFLLD LHEDLNRVK
Sbjct: 105 YARLICSLWKESYQKSINPIELISMIQLWNPFFVMNSQQDSHELLAFLLDMLHEDLNRVK 164

Query: 340 HKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDP 399
           HKPYI+ K  D +P+++ A++ W++++ RN SIIVD+ QGQ  + L C VCN  S  F+ 
Sbjct: 165 HKPYIEEKTYDQQPNQQQANKAWSDYLKRNRSIIVDLFQGQSINMLQCMVCNTKSYKFET 224

Query: 400 FMYLSLPLQ 408
           FMYLSLP+Q
Sbjct: 225 FMYLSLPIQ 233



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 59/146 (40%), Positives = 95/146 (65%), Gaps = 4/146 (2%)

Query: 682 LYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHK 741
           L  C+  +LREE L   + W+C +CK  +++ K + LW+LP +LVIHLKRF ++ + + K
Sbjct: 238 LIQCISEYLREEELDEANQWHCSKCKSVKKSKKGIKLWKLPNILVIHLKRFKFTANYRCK 297

Query: 742 LETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYN 801
           L   +NFP+++ +L+ Y   + ++    Y+LY + NH G + SGHYT++ K  D  +WYN
Sbjct: 298 LRWLINFPMYNLDLSNYSEQEQAT----YDLYGVINHSGTLHSGHYTSNCKNKDTQKWYN 353

Query: 802 FDDSHISPINEDDVKSAAAYVLFYRR 827
           FDD+ I  I E +V ++ AY+LFY +
Sbjct: 354 FDDTRIKEIMEKEVLTSDAYLLFYYK 379


>gi|325183266|emb|CCA17724.1| ubiquitinspecific protease putative [Albugo laibachii Nc14]
 gi|325183912|emb|CCA18370.1| ubiquitinspecific protease putative [Albugo laibachii Nc14]
          Length = 1801

 Score =  142 bits (358), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 93/281 (33%), Positives = 134/281 (47%), Gaps = 56/281 (19%)

Query: 269  RGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV------ 321
            R  S G  GL NLGNTC+MNSA+QCL +T   A YF    Y  +IN  + LG+       
Sbjct: 1034 RMRSGGSVGLCNLGNTCYMNSALQCLCNTQLLAEYFLSGMYLDDINRTSTLGLQGKLAQV 1093

Query: 322  -----------------------------------------ELLAFLLDGLHEDLNRVKH 340
                                                     ELLAFLL GL EDLNR+  
Sbjct: 1094 YGKLAEDMWCAKQKSISPRHFKKTIGKFNDAFRGNDQQDAQELLAFLLSGLSEDLNRITE 1153

Query: 341  KPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPF 400
            KPY+   D+DGR D ++ADE+W NH+ R  SIIV +  GQYKS L C  C   S  F+PF
Sbjct: 1154 KPYVDQPDSDGRYDSDLADEWWRNHLRREVSIIVALFTGQYKSLLTCMDCGFKSARFEPF 1213

Query: 401  MYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLK----- 455
             +L +PL   T  T+T+ +  S+G   P+  ++ +       DL + + ++C+ +     
Sbjct: 1214 TFLQVPLPEPTHTTVTLVLVLSNGMQ-PTKISIRLEIAATVFDLKKEIVHLCTTELDVAN 1272

Query: 456  -QSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRV 495
                ++K++E     I  +  D    +  I+  DHL A+++
Sbjct: 1273 VTESDIKISEYSGSMIISYKADSR-RIGQIRSIDHLMAFQL 1312



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/248 (31%), Positives = 117/248 (47%), Gaps = 58/248 (23%)

Query: 633  IPSSSTSI------VVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTE--PLSLYT 684
            IP +S  I       + VDW   + +  +   LE +  +  +G + +    +  P+ L  
Sbjct: 1520 IPCTSRPIDLVEEEAIAVDWDLTMFQDRSN--LERMKRMDDHGSIARNDAIDKGPVPLTR 1577

Query: 685  CLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLET 744
            CL+ F  EE L+ E   YC  C +  + +KKL++WRLP V+VIHLKRF Y+++ + KL +
Sbjct: 1578 CLQDFTAEE-LIHEG--YCSSCCKHLEMTKKLEIWRLPPVMVIHLKRFQYTQTYRRKLLS 1634

Query: 745  FVNFPIHDFNLTKYVA-------------------------------------------N 761
             V FPI + +L   VA                                           N
Sbjct: 1635 LVEFPIAELDLGPCVAPHVEFPERYPMKKDTEEPVNETEMNEEARLRAVNRSHRGYTNTN 1694

Query: 762  KNSSR--RQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAA 819
             + SR    LY+LY + NH+G +G GHYTA  K   + +WY +DD  +  + E  + S+A
Sbjct: 1695 LDQSRCLETLYDLYGVVNHHGALGGGHYTAFAKNFRDEQWYYYDDERVRVVEESKIVSSA 1754

Query: 820  AYVLFYRR 827
            AY+LFY R
Sbjct: 1755 AYLLFYIR 1762



 Score = 53.1 bits (126), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 9/65 (13%)

Query: 37  RPSGIDNSDLVNDATAEDPGAGPEIV---DTLLEGRDYILLPQEVWNQLHSWYGGGPTLA 93
           RP+ IDNSDL+++A +      P ++   D +  G D+ ++P+++WN L  WY GGP L 
Sbjct: 923 RPAKIDNSDLLDNAQS------PPVLKAKDQIHLGVDFEVIPEQLWNALKLWYSGGPELP 976

Query: 94  RKVIS 98
            KVI+
Sbjct: 977 CKVIT 981


>gi|145532773|ref|XP_001452142.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124419819|emb|CAK84745.1| unnamed protein product [Paramecium tetraurelia]
          Length = 342

 Score =  142 bits (358), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 77/184 (41%), Positives = 96/184 (52%), Gaps = 48/184 (26%)

Query: 287 MNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM------------------------- 320
           MNS  QCL +T +  +YF  + Y  EIN  NPLG                          
Sbjct: 1   MNSGTQCLSNTYQLTQYFLSNKYFEEINEDNPLGTKGQLVRKFGSLLKKLWCGDKNIVIP 60

Query: 321 ----------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVA 358
                                  EL+ FLLDGLHEDLNRVK KPY++SKD  GRPD EVA
Sbjct: 61  TSFKKAVGQFQPMFKGYQQHDSSELITFLLDGLHEDLNRVKKKPYVESKDHQGRPDVEVA 120

Query: 359 DEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVT 418
            E W NH+ARN SIIVD+  GQYKSTL CP C ++S+TFDPF+ + L +     +++ + 
Sbjct: 121 KEGWENHLARNQSIIVDLMHGQYKSTLKCPNCQQISITFDPFLTVGLGIPNRKQKSIQIK 180

Query: 419 VFTS 422
           V  S
Sbjct: 181 VIKS 184


>gi|118344206|ref|NP_001071926.1| zinc finger protein [Ciona intestinalis]
 gi|92081556|dbj|BAE93325.1| zinc finger protein [Ciona intestinalis]
          Length = 1145

 Score =  142 bits (358), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 65/154 (42%), Positives = 97/154 (62%), Gaps = 9/154 (5%)

Query: 682 LYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM-KH 740
           L  CL  F   E L  ++ WYCPQCK+ RQA KK+ LW LP+VL+I LKRFS+   + + 
Sbjct: 835 LLECLSLFTEPEILTQDEAWYCPQCKKHRQAMKKMSLWDLPDVLIIQLKRFSFKNYLWRD 894

Query: 741 KLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENR-- 798
           K+  F++ P+ +F++T Y  N  +S+   Y+L+A+ NH+GG+  GHYT +++L D N   
Sbjct: 895 KINMFIDLPVSNFDMTSYCNNPKTSKSLCYDLFAVINHHGGILGGHYTTNVRLPDVNNTS 954

Query: 799 -----WYNFDDSHISPINEDDVKSAAAYVLFYRR 827
                W   DD H++ +N + V + AAYV+FY R
Sbjct: 955 ESVVDWRLCDDRHVTKLN-NKVVTEAAYVMFYHR 987



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 107/360 (29%), Positives = 164/360 (45%), Gaps = 65/360 (18%)

Query: 177 DANIQMDQDILVEVLDNVNGTNCKSSI--QDNGFAEKKASSVLVEPSKSSLSIAGGW--- 231
           D  ++  +  +V    N +   C+  I  +++    K   S  + P K S SI   +   
Sbjct: 264 DVKVEFYEMAVVVKFRNSSSDFCRKHIVLENSLLQWKTQLSFSIIPDKCSFSIMDTFVQL 323

Query: 232 SASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAI 291
           +  K T+ +  + +  S +L S     NT+G +   ++   +G TGL+NLGNTCFMNS I
Sbjct: 324 TMQKKTTDHLETLLHESGHLVSP----NTVGDTKKISQ-PGLGYTGLINLGNTCFMNSVI 378

Query: 292 QCLVHTPEFARYF-REDYRREINWQNPLGMV----------------------------- 321
           Q L +TPE   YF  E +   IN +NPLG+                              
Sbjct: 379 QALANTPELRNYFLDEKFHCHINTKNPLGVGGKMAKAFYVVMRKLWGCSNKAFSPHEFRD 438

Query: 322 ------------------ELLAFLLDGLHEDLNRVKHKPYIK-SKDADGRPDEEVADEYW 362
                             E +AFLLD LHEDLN  ++   I+ + +  G  +E +A E W
Sbjct: 439 VVGLKGSRFTDGMQHDAHEFMAFLLDMLHEDLNTARNSTSIQPTSEVKGISEEMMAFEAW 498

Query: 363 ANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTS 422
            ++++R+ S I++   G  KS L C VC   SV FDPF++LS+PL     +  +V  F  
Sbjct: 499 KSYLSRSGSFIIENFHGLLKSQLKCLVCKTKSVKFDPFLFLSVPL-PKKVQPFSVFFFRK 557

Query: 423 DGSALPSTYTVTVPKHG-RCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFL--DDPLI 479
           D S  P   TV+V   G +  D++  +G I +      L   E+ N+++ RF     PLI
Sbjct: 558 DVSE-PIKITVSVHSDGAKMSDVLSQVG-IHTGTNINHLVSYEVNNNALCRFFVPTSPLI 615


>gi|47220072|emb|CAG12220.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 890

 Score =  142 bits (358), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 70/213 (32%), Positives = 115/213 (53%), Gaps = 27/213 (12%)

Query: 640 IVVYVDWSQK----LLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPL 695
           + + V+W ++    L       ++ +   V+++    +  + +  +L  CL+ + +EE L
Sbjct: 109 VKIVVEWDKETKDYLFGHTEDEYIPDAESVYRH--REQHHQPQACTLAQCLQLYTKEEQL 166

Query: 696 VPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNL 755
            P+D W CP CK+ +Q   KL LW LP+VL++HLKRF      + K++  V FP+   ++
Sbjct: 167 APDDAWRCPHCKQLQQGRIKLSLWTLPDVLILHLKRFRQEGERRVKMQNMVRFPLMGMDM 226

Query: 756 TKYVANKNSS-----------RRQ----------LYELYALTNHYGGMGSGHYTAHIKLL 794
             +V  ++ S           RR           LY+LYA+ NH+G M  GHYTA+ K  
Sbjct: 227 APHVVKRSQSSWSLPSHWSPWRRPYGLGRNPNDYLYDLYAVCNHHGNMHGGHYTAYCKNS 286

Query: 795 DENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            + +WY FDDS +SP+ ++DV    AY+LFY+R
Sbjct: 287 IDGQWYCFDDSEVSPVADEDVCQQTAYILFYQR 319


>gi|327264818|ref|XP_003217208.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 43-like [Anolis
           carolinensis]
          Length = 990

 Score =  142 bits (357), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 62/162 (38%), Positives = 95/162 (58%), Gaps = 15/162 (9%)

Query: 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKH 740
           +L  C + + +EE L P+D W CP C+  +Q   KL LW LP++L+IHLKRF      +H
Sbjct: 426 TLDECFQLYTKEEQLAPDDAWRCPHCQVLQQGMVKLSLWTLPDILIIHLKRFRQVGEQRH 485

Query: 741 KLETFVNFPIHDFNLTKYVANKNSSRRQ---------------LYELYALTNHYGGMGSG 785
           KL T V FP++  ++  +VA ++   +                LY+LYA+ NH+G M  G
Sbjct: 486 KLSTLVRFPLYGLDMAPHVAKRSRGSKWGPWKQPTPESNQCNFLYDLYAVCNHHGSMQGG 545

Query: 786 HYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           HYTA+ +   +  WY++DDS +  + ED+V +  AY+LFY+R
Sbjct: 546 HYTAYCRNALDGHWYSYDDSTVEAVLEDEVSTRGAYILFYQR 587



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 92/192 (47%), Gaps = 19/192 (9%)

Query: 321 VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRP---DEEVADEYWANHIA---RNDSIIV 374
           +E L +LLD +HEDL  V     +K     G+P    EE +    A   A   +  S + 
Sbjct: 55  LEFLLWLLDRMHEDLCSVSLNQKVK---VSGKPLLGQEESSSGGGAQAAAQPSKGQSFVQ 111

Query: 375 DVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVT 434
           +  Q QY+S+L CP C K S TFDPF+ +SLP+    TR + VT+     S       +T
Sbjct: 112 NHFQAQYRSSLTCPHCLKQSNTFDPFLCISLPIPLRQTRPLNVTLVFQSKSQRFVRVGLT 171

Query: 435 VPKH---GRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQ-RFLDDPLISLSTIKDDDHL 490
           VP      + R+++   G +      +++ +AE+     Q  F DD    L+TI D D +
Sbjct: 172 VPLFSTVAKLREMVAEEGKL----SPDQVILAELGPSGFQCSFSDDE--DLNTIADGDSI 225

Query: 491 AAYRVPKLVKKA 502
            A++ P    KA
Sbjct: 226 YAFQAPLSFSKA 237


>gi|340503880|gb|EGR30389.1| ubiquitin carboxyl-terminal hydrolase family protein, putative
           [Ichthyophthirius multifiliis]
          Length = 1095

 Score =  142 bits (357), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 74/182 (40%), Positives = 102/182 (56%), Gaps = 40/182 (21%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGM------------ 320
           GL GL NLGNTC+MNSA+QCL +T     YF  + Y++EIN  NPLG             
Sbjct: 440 GLCGLNNLGNTCYMNSALQCLSNTEPLTHYFLNKYYKKEINKDNPLGTKGKLKLWIGTDR 499

Query: 321 --------------------------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGRP- 353
                                      E L+F+LDGLHEDLNRVK+K Y +  D++G   
Sbjct: 500 VFYPSAIKNAVSQVQNIFSGYQQHDSQEFLSFVLDGLHEDLNRVKNKSYTEKIDSNGEEF 559

Query: 354 DEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTR 413
           D  ++ + W NH+ RN S+IVD+ QGQ+KS ++CP C+K S+TFDPF+  +LP+     +
Sbjct: 560 DNIISKKSWINHLKRNQSLIVDLMQGQFKSKVICPDCSKQSITFDPFLTCTLPIPHQQIK 619

Query: 414 TM 415
            +
Sbjct: 620 VL 621



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 95/195 (48%), Gaps = 45/195 (23%)

Query: 676  RTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYS 735
            + E +S+Y C   F + E L   + WYC  CK  ++A+K++ ++R+P +L+IHLKRF  +
Sbjct: 902  QKENISIYECFNQFQQSEKLEENNEWYCSDCKAHKRATKQMTIYRVPNILIIHLKRFKMT 961

Query: 736  RSM-KHKLETFVNFPIHDFNLTKYVANK-------------------------------- 762
              +   KL   V FP+   ++T YV  K                                
Sbjct: 962  GGIWNQKLTKLVTFPVEGLDITDYVVKKELPSYYYENHTDLNDDEEIKNLYVKPDFQENL 1021

Query: 763  ----------NSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINE 812
                        + R L++LYA  NH+GG+G GHYTA    L+   WY FDD  +  I++
Sbjct: 1022 FQKGQIDIEGEDNSRLLFDLYAAVNHFGGLGGGHYTAFA--LNNGEWYCFDDQSVQKIDQ 1079

Query: 813  DDVKSAAAYVLFYRR 827
             DV S ++Y+LFY++
Sbjct: 1080 KDVCSESSYILFYKK 1094


>gi|354546306|emb|CCE43036.1| hypothetical protein CPAR2_206790 [Candida parapsilosis]
          Length = 1322

 Score =  142 bits (357), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 101/320 (31%), Positives = 161/320 (50%), Gaps = 33/320 (10%)

Query: 529  GTPLVSSISRDD--------VISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVD 580
             TP V  + RD+        ++  G    +V     PF +    M        S +T  D
Sbjct: 850  NTPQVIPLGRDEWSDSNDAVIVVDGVKSESVSDAGEPFEQDSRPMLPPRNQQYSHLTLSD 909

Query: 581  PSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSI 640
               E    SSS I  +    S   +  N PL    E+N   + + E  KT+   +S    
Sbjct: 910  TESEGMFGSSSFIPPQGGPDSTKPSNVNSPL----ETNFATEEAGEEHKTLVCKNS---- 961

Query: 641  VVYVDWSQKLLEKYNTHFLENLL------------EVFKNGPVTKKARTEPLSLYTCLEA 688
            V+  DW +++  K    F +  L            ++ +N    ++ R   +SL  CL++
Sbjct: 962  VLLCDWDKEIYAKL---FGDASLTTWDSPPQLVNQQLAENKAKFERQRKSKISLADCLKS 1018

Query: 689  FLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNF 748
            F   E L   D+WYCP CK+ ++A+K + +W   ++L IHLKRF  +R+   K++  V+F
Sbjct: 1019 FSTPEVLGEHDLWYCPSCKDHKRATKSIQIWSTGDILTIHLKRFHSARAFSDKIDVVVDF 1078

Query: 749  PIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHIS 808
            PI   ++  YVAN    +  +Y+L A+ NHYGG+G GHYTA +K   +++WY F+DS ++
Sbjct: 1079 PIEGLDIGPYVANP-QEKDCIYDLIAVDNHYGGLGGGHYTASVKNFKDDKWYYFNDSRVT 1137

Query: 809  PINE-DDVKSAAAYVLFYRR 827
             IN  +++ S+AAY+LFYRR
Sbjct: 1138 EINNPEELVSSAAYLLFYRR 1157



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/291 (33%), Positives = 131/291 (45%), Gaps = 72/291 (24%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGM------------ 320
           G  GL NLGNTC+MNSA+QCL+H PE  +YF  + Y++E+N  NPLG             
Sbjct: 336 GHMGLSNLGNTCYMNSALQCLLHVPEINQYFFHNIYQKELNADNPLGYNGDVANAFGSLL 395

Query: 321 -------------------------------------VELLAFLLDGLHEDLNRVKHKPY 343
                                                 ELL++LLD LHEDLNR+  KPY
Sbjct: 396 KQAFDPAKTSSSISPRDFKHTIGRYSSMFSGYLQQDSQELLSWLLDALHEDLNRILQKPY 455

Query: 344 IKSKDADGRPDEEVADE---------YWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVS 394
            +  +     D+EV D+          W  H  RNDS+I D+  G Y+S LVCP C K S
Sbjct: 456 CEKPELK---DDEVDDKDAIAKLSETCWNQHKQRNDSVITDLFTGLYESILVCPDCGKTS 512

Query: 395 VTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYT---VTVPKHGRCRDLIQVLGNI 451
           +TFDPF  L+LPL        T T+    G+ L S      V +       DLI  L + 
Sbjct: 513 ITFDPFNDLTLPLPINKKWYHTFTIVDLAGNKLESRIMRLEVELKTSSNYDDLINYLSSF 572

Query: 452 CSLKQSEELKVAEIQNHSI------QRFLDDPLISLSTIKDDDHLAAYRVP 496
            ++ + ++L + E+  H I       R  +  L     IKD D +  Y +P
Sbjct: 573 LNIDK-DDLFLYEVFQHGIYADFQKNRIKNKFLPITEVIKDGDDVVVYIIP 622


>gi|149515015|ref|XP_001519648.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15, partial
           [Ornithorhynchus anatinus]
          Length = 401

 Score =  142 bits (357), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/161 (46%), Positives = 104/161 (64%), Gaps = 9/161 (5%)

Query: 628 DKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF-KNGPVTKKARTEPL-SLYTC 685
           D+ +R+   S    + +DW  +L ++Y   F +N  E F K+  V  K   +P   L  C
Sbjct: 248 DRQLRLDERS---FLALDWDPELKKRY---FDDNAAEDFEKHESVEYKPPKKPFVKLKDC 301

Query: 686 LEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETF 745
           +E F  +E L  ED WYCP CKE +QA+KKLDLW LP VLV+HLKRFSYSR M+ KL+T 
Sbjct: 302 IELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTL 361

Query: 746 VNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGH 786
           V+FPI D ++++++ N N+   + Y L A++NHYGGMG GH
Sbjct: 362 VDFPITDLDMSEFLINPNAGPCR-YNLIAVSNHYGGMGGGH 401


>gi|118398123|ref|XP_001031391.1| Ubiquitin carboxyl-terminal hydrolase family protein [Tetrahymena
           thermophila]
 gi|89285719|gb|EAR83728.1| Ubiquitin carboxyl-terminal hydrolase family protein [Tetrahymena
           thermophila SB210]
          Length = 1654

 Score =  142 bits (357), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/217 (36%), Positives = 110/217 (50%), Gaps = 53/217 (24%)

Query: 262 GSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGM 320
           G  G + +    GL GL NLGNTCFMNSA+QCL +  E   +    +Y  ++N  NPLG 
Sbjct: 496 GQKGFSGKK---GLCGLQNLGNTCFMNSALQCLSNVEELTTFMVNNEYVNDLNPDNPLGA 552

Query: 321 -----------------------------------------------VELLAFLLDGLHE 333
                                                           ELL++LLDGLHE
Sbjct: 553 NGHLAVSYADLVRDIWQGGDSSVSPHYLKKVIGKFAPQFYGYSQQDSQELLSYLLDGLHE 612

Query: 334 DLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCP--VCN 391
           DLNR+K KP +++ D  G  D+E++ E++ N+  RNDS+I D+  GQ+KSTLVCP   C 
Sbjct: 613 DLNRIKKKPVVEAIDYSGGKDQEMSLEFFKNYKKRNDSVISDLMVGQFKSTLVCPDKNCG 672

Query: 392 KVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALP 428
           K+S+TFDPF+ LS+P+   T   ++  +   D    P
Sbjct: 673 KISITFDPFLTLSVPIPRVTKEDVSFYIIFKDPRKTP 709



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 62/166 (37%), Positives = 101/166 (60%), Gaps = 11/166 (6%)

Query: 666  FKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVL 725
            F++   +K+  +    LY C++AF+++E L   + WYC +CK    A+K+++++  P++L
Sbjct: 998  FESQKTSKEVSSGSADLYDCIDAFVKKEQLEKGNEWYCSKCKRHVLATKQMEIYNTPKIL 1057

Query: 726  VIHLKRFS----------YSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYAL 775
            +IHLKRF           Y  S   K+   ++FPI + ++TKYV   N  + Q+Y+L+A+
Sbjct: 1058 IIHLKRFKSGNVRNFGRYYFESGGKKINDLIDFPIENLDMTKYVLGSNG-KPQIYDLFAV 1116

Query: 776  TNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAY 821
            + HYGGMG GHYTA  +     RWYNF+DSH+S  + +    +AAY
Sbjct: 1117 SQHYGGMGGGHYTACAQNFLNKRWYNFNDSHVSQSSAEQAVCSAAY 1162


>gi|444323878|ref|XP_004182579.1| hypothetical protein TBLA_0J00600 [Tetrapisispora blattae CBS 6284]
 gi|387515627|emb|CCH63060.1| hypothetical protein TBLA_0J00600 [Tetrapisispora blattae CBS 6284]
          Length = 1462

 Score =  142 bits (357), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 72/169 (42%), Positives = 105/169 (62%), Gaps = 6/169 (3%)

Query: 665  VFKNGPVTKK------ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDL 718
            V KN  + KK       + + + L  CL  F + E L  +D WYCP CK+ RQA+K+++L
Sbjct: 1049 VLKNTELEKKREEQIFEKEKTILLDDCLRLFSKPEILGLQDSWYCPTCKDHRQATKQIEL 1108

Query: 719  WRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNH 778
            W  P++L+IHLKRF   RS   K++  VNFPI D +LT ++   +  +  +Y+L A+ NH
Sbjct: 1109 WNTPDILLIHLKRFENQRSFSDKIDAVVNFPITDLDLTPHIVCTDQEKSNIYDLIAVDNH 1168

Query: 779  YGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            YGG+G GHYTA++K   + +WY FDDS +S  +     S +AY+LFY R
Sbjct: 1169 YGGLGGGHYTAYVKNFVDQKWYYFDDSRVSLADPQRSISGSAYLLFYVR 1217



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 123/256 (48%), Gaps = 36/256 (14%)

Query: 322 ELLAFLLDGLHEDLNRVKHKPYIK-------SKDADGRPDEEVADEYWANHIARNDSIIV 374
           E LAF+LDGLHEDLNR+  KP+++       S   D +  +++AD+ W  H+ RNDSI+ 
Sbjct: 520 EFLAFILDGLHEDLNRILKKPFVEKPSLPENSNYKDYKVIKKLADDTWEAHLKRNDSIVT 579

Query: 375 DVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVT 434
           D+  G YKSTL CP C+ VSVTFDP+  L+LPL   T     + +F S+    P +  V 
Sbjct: 580 DLFVGMYKSTLQCPDCHNVSVTFDPYNDLTLPLPVETIWNKVIKIFPSNSP--PCSLEVE 637

Query: 435 VPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNH---------SIQRFLDDPLISLSTIK 485
           + K     DL + +     +  S+        N          S  +FL  PL  L  I 
Sbjct: 638 LEKTSTYNDLKEYISRNTGIAASDLFGFEIFSNTFYSNYEAPGSNGQFL--PLQEL--IA 693

Query: 486 DDDHLAAYRVPKLVKKAVFLQLIHRLQE--QEPGAAQTTSQWKAYGTPLVSSISRDDVIS 543
           D D +  Y +P      V   L  ++ +  + P         + +G P   +++ ++  +
Sbjct: 694 DSDDVIFYEIPDRENNIVIPILNMKIDKGFRSP---------RLFGVPFFITLTNEEASN 744

Query: 544 SGKIQSTVQR---MLS 556
            G ++  +++   MLS
Sbjct: 745 PGFVRYIIEKYYTMLS 760



 Score = 69.3 bits (168), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 29/49 (59%), Positives = 37/49 (75%), Gaps = 1/49 (2%)

Query: 272 SVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLG 319
           S G  GL+NLGNTC+MNSA+QCL+H P+F  YF    Y++EIN  NP+G
Sbjct: 410 STGTLGLVNLGNTCYMNSALQCLIHLPKFNEYFLLNGYQKEINLDNPIG 458


>gi|348685710|gb|EGZ25525.1| hypothetical protein PHYSODRAFT_484843 [Phytophthora sojae]
          Length = 1784

 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/289 (33%), Positives = 132/289 (45%), Gaps = 56/289 (19%)

Query: 269  RGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV------ 321
            R  S G  GL NLGNTC+MNSA+QCL +T   A YF    Y  +IN  + LG+       
Sbjct: 969  RMRSGGSVGLANLGNTCYMNSALQCLTNTKLLAEYFLSGMYLEDINRTSTLGLQGKLAEV 1028

Query: 322  -----------------------------------------ELLAFLLDGLHEDLNRVKH 340
                                                     ELLAFLL GL EDLNR++ 
Sbjct: 1029 YGKLAEDMWCVKQKSISPRNFKKSIGKFNEVFRGNDQQDAQELLAFLLSGLSEDLNRIQD 1088

Query: 341  KPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPF 400
            KPYI+  D+DGR D ++ADE+W NH+ R  SIIV +  GQYKS L C +C   S  F+PF
Sbjct: 1089 KPYIEQPDSDGRYDADLADEWWRNHLRREVSIIVALFTGQYKSLLTCSICGFKSARFEPF 1148

Query: 401  MYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLK----- 455
             +L +PL      T+TV +  + G   P   +V +       DL   L  +C  +     
Sbjct: 1149 TFLQVPLPEPKHNTVTVQLVLASG-VTPMKVSVRLSISATIFDLKHELMKMCHDEFGLPD 1207

Query: 456  -QSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAV 503
                ++K+ E     I  F  D    +  I+  D L A+++  L  + V
Sbjct: 1208 VAESDIKLCEFSGSMILSFKADNR-RVGQIRSIDRLIAFQLEPLDSETV 1255



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 71/124 (57%), Gaps = 11/124 (8%)

Query: 641  VVYVDWSQKLLEKYNT----HFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLV 696
             + +DW   + +   T      +EN   V +N  + K     P+ L  CL+AF  EE + 
Sbjct: 1493 AIAIDWDLSVFQDRETMDKMKHVENHDSVARNEAIDKG----PVPLRHCLDAFTSEEKI- 1547

Query: 697  PEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLT 756
                 YC  C++ ++ +KKL++WRLP V+V+HLKRF Y+++ + KL + V FPIHD +L+
Sbjct: 1548 --SEGYCSSCRQHQEMTKKLEIWRLPPVMVVHLKRFQYTQTYRRKLGSLVEFPIHDLDLS 1605

Query: 757  KYVA 760
              VA
Sbjct: 1606 CCVA 1609



 Score = 44.7 bits (104), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 37/65 (56%)

Query: 763  NSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYV 822
            +S R    +  A+ N    +G GHYTA+ K   +++WY +DD  +  + E  V S +AY+
Sbjct: 1679 DSQRAAAAQAAAVRNRVRALGGGHYTAYAKNFVDDQWYYYDDERVRVVEEQQVVSPSAYL 1738

Query: 823  LFYRR 827
            LFY R
Sbjct: 1739 LFYLR 1743


>gi|145542422|ref|XP_001456898.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124424712|emb|CAK89501.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1029

 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 121/245 (49%), Gaps = 48/245 (19%)

Query: 251 LASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YR 309
           +   +D  + +  + + T  + +GLTG  NLGNTC+MNSA+QCL +T E +RYF ++ ++
Sbjct: 316 VCEKQDDTDEILVNLLPTPQSKLGLTGFRNLGNTCYMNSALQCLSNTTELSRYFLDNSFK 375

Query: 310 REINWQNPLGM-----------------------------------------------VE 322
            +IN QN LG                                                 E
Sbjct: 376 FDINTQNALGTKGEFASLFSYLLKRLWFDKQTTISPFQFKRLVGKLSPNFAGNAQHDAQE 435

Query: 323 LLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYK 382
            + F LD L+EDLNRVK KPY++  D + RPD+EV+ E W     RNDS+IVD   GQY+
Sbjct: 436 FITFTLDLLNEDLNRVKVKPYVEIPDNNNRPDDEVSQEQWECFKKRNDSLIVDQLYGQYR 495

Query: 383 STLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCR 442
           S L CP CNK+S+TFDP++ +++ +     + +   +   +   L    T       R +
Sbjct: 496 SKLQCPNCNKISITFDPYLMVNVTIPQEKKKVLEFYIIDPENFWLSQPVTHYYEPELRLK 555

Query: 443 DLIQV 447
           +++Q 
Sbjct: 556 EVLQF 560



 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/148 (40%), Positives = 91/148 (61%), Gaps = 7/148 (4%)

Query: 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM-K 739
           +L  CLE   + E L  ++ WYC  CK+  QA K L +++  ++L+ HLKRF  S  + K
Sbjct: 798 TLEHCLEYSTKPEQLQVDNSWYCSGCKDHVQAYKTLQIYKTSKILIFHLKRFKDSYKLFK 857

Query: 740 HKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRW 799
            KL+T + +P    ++T +V +++++   LYELYA+ NH G  GSGHYTA  K  +   W
Sbjct: 858 SKLQTNIIYP-EKLDMTNFVLHQDNNN--LYELYAICNHIGESGSGHYTAFCK--NNGDW 912

Query: 800 YNFDDSHISPINEDDVKSAAAYVLFYRR 827
           Y FDDS ++    +++ +  AYVLFYRR
Sbjct: 913 YKFDDSIVTK-ETNNIVTPNAYVLFYRR 939


>gi|443918707|gb|ELU39101.1| ubiquitin-specific protease [Rhizoctonia solani AG-1 IA]
          Length = 275

 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 61/136 (44%), Positives = 91/136 (66%), Gaps = 5/136 (3%)

Query: 692 EEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIH 751
           EE L  ED+WYCP+CK+ +QA+K+ +LW +P + V+ LKRFS +R+M+ K++  V FPI 
Sbjct: 9   EEQLGEEDLWYCPRCKKHQQATKRFELWSVPNIFVVRLKRFSNARAMQDKIDALVEFPIS 68

Query: 752 DFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPIN 811
             +L+  V     S   +Y+L+A+  H GG+G GHY A+ K L +  WY+FDDS++S  +
Sbjct: 69  GLDLSSRVGESGQSDECVYDLFAVDEHMGGLGGGHYRAYAKNLSDGEWYHFDDSYVSKSS 128

Query: 812 EDDVKSAAAYVLFYRR 827
                +A AY+LFYRR
Sbjct: 129 -----NANAYLLFYRR 139


>gi|345559926|gb|EGX43057.1| hypothetical protein AOL_s00215g843 [Arthrobotrys oligospora ATCC
            24927]
          Length = 1829

 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 58/143 (40%), Positives = 92/143 (64%), Gaps = 1/143 (0%)

Query: 685  CLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLET 744
            C + F REE L  ++ WYCP+CKE R A K + +WR+P+++ +  KRFS +RS + K++ 
Sbjct: 1088 CFDEFGREEILNDDNQWYCPRCKEHRNAKKSMQIWRVPDIIALQFKRFSSTRSFRDKIDA 1147

Query: 745  FVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDD 804
             ++FPI   +LT  V  ++  +  +Y+L A+ NH+GG+G GHYTA+ +   + +WY FDD
Sbjct: 1148 AIDFPIEGLDLTGRVL-ESDGKSLIYDLIAVDNHFGGLGGGHYTANARNWVDKKWYYFDD 1206

Query: 805  SHISPINEDDVKSAAAYVLFYRR 827
            S         +  +AAY++FYRR
Sbjct: 1207 SSARQTPASSINGSAAYLVFYRR 1229



 Score =  122 bits (306), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 132/291 (45%), Gaps = 62/291 (21%)

Query: 266 VTTR--GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPL---- 318
           V TR  G + G  G  NLGNTC+MNSA+QC+    E +RYF E  ++RE+N +NP+    
Sbjct: 416 VMTRRDGRAAGAVGFSNLGNTCYMNSALQCIKSVEELSRYFIEGLHKRELNPRNPISSGG 475

Query: 319 ----------GMV----------------------------------ELLAFLLDGLHED 334
                     G V                                  E +++LLD LHED
Sbjct: 476 RIATMYAQLVGQVYGQTAGSTVAPREFKGAVGKHNTIFSGYGQQDSQEFVSYLLDILHED 535

Query: 335 LNRVKHKPYIKSKDAD----GRPDE--EVADEYWANHIARNDSIIVDVCQGQYKSTLVCP 388
           LNR+  KP ++  D+     G P    ++A+E W  +  RNDS+I+D+  G YKST+ CP
Sbjct: 536 LNRIHQKPVVEFPDSTDEMIGNPAAIAKLAEENWELYRKRNDSVIIDLFAGMYKSTVTCP 595

Query: 389 VCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTV----PKHGRCRDL 444
           +C K S+ FDP++   LPL      T ++T   +  +       VTV     K    + L
Sbjct: 596 ICEKTSIKFDPWLSCQLPLPVENLWTKSITFVPAAKTISKYEKLVTVHVEMEKFATIKQL 655

Query: 445 IQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRV 495
              +G    +   ++L V+E+  +   +  +D       I  +D +  Y V
Sbjct: 656 KDYVGTRVGVG-IKKLVVSEVFRNKFYKHHEDNKTVSEAIMPNDQIYVYEV 705


>gi|296811975|ref|XP_002846325.1| ubiquitin carboxyl-terminal hydrolase 12 [Arthroderma otae CBS
            113480]
 gi|238841581|gb|EEQ31243.1| ubiquitin carboxyl-terminal hydrolase 12 [Arthroderma otae CBS
            113480]
          Length = 1633

 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/200 (40%), Positives = 122/200 (61%), Gaps = 15/200 (7%)

Query: 632  RIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLR 691
            R+P      V+ +DWS+   E Y+  F+    ++       KK R   ++L  CL+ F R
Sbjct: 1201 RLPYVRPGDVIVLDWSE---ETYDAIFVTTKRQLRSR----KKKRG--ITLDECLDEFGR 1251

Query: 692  EEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIH 751
            EE L   D WYCP+CKE R+ASKK +LW+ P++LV+HLKRFS +R  + K++  V+FP+ 
Sbjct: 1252 EEILSENDAWYCPRCKEHRRASKKFELWKSPDILVMHLKRFSANRIFRDKIDAVVDFPL- 1310

Query: 752  DFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFD--DSHISP 809
            + ++T  +         +Y+L A+ NHYGG+G GHYTA+ +   +  WY F+  DSH++ 
Sbjct: 1311 ELDMTGRIQMPGEGESMIYDLIAVDNHYGGLGGGHYTAYARNFVDGLWYEFNGVDSHVT- 1369

Query: 810  INED--DVKSAAAYVLFYRR 827
            +  D   V ++AAY+LFYRR
Sbjct: 1370 MKRDPASVVTSAAYLLFYRR 1389



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/282 (32%), Positives = 132/282 (46%), Gaps = 59/282 (20%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFR-EDYRREINWQNPL---GMV---- 321
           G + G+TGL NLGNTC+MNSA+QC+    E + YF   +Y++++N  NPL   G V    
Sbjct: 615 GKARGVTGLSNLGNTCYMNSALQCVRSVEELSHYFLLGEYKKDLNPNNPLSHNGEVAKAY 674

Query: 322 -----------------------------------------ELLAFLLDGLHEDLNRVKH 340
                                                    E L FLLDGL EDLNR++ 
Sbjct: 675 ANLLQQIFDAQGSASFAPRNFKVTIGRYGPSFSGYGQQDSQEFLLFLLDGLQEDLNRIQK 734

Query: 341 KPYIKSKDA------DGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVS 394
           KPYI+  D+      D    +  AD  W  + ARNDS+I D+  G YKST+VCP C+KVS
Sbjct: 735 KPYIEKPDSTDEMVHDKAALQRFADRCWEIYKARNDSVITDLFSGMYKSTVVCPTCDKVS 794

Query: 395 VTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSL 454
           + FDPF  L+L +    T +  +  F       P    V + K+   + + Q +G   ++
Sbjct: 795 IIFDPFNNLTLQIPIENTWSHKIMFFPL--HKPPVNVEVDIDKNSSIKTVKQYVGQKMNV 852

Query: 455 KQSEELKVAEIQNHSIQRFLD-DPLISLSTIKDDDHLAAYRV 495
              + L +AEI  +   +  D    I+   I + D +A Y +
Sbjct: 853 -DPDRLVMAEIYKNKFYKLFDHSQSIADHQIGEGDTIAMYEL 893


>gi|432924288|ref|XP_004080558.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 31-like [Oryzias
           latipes]
          Length = 1302

 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/168 (38%), Positives = 96/168 (57%), Gaps = 21/168 (12%)

Query: 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKH 740
           SL  C + + +EE L P+D W CP CK+ +Q S KL LW LP++L++HLKRF      + 
Sbjct: 567 SLAQCFQLYTKEEQLAPDDAWRCPHCKQLQQGSIKLSLWTLPDILILHLKRFRQDGDRRM 626

Query: 741 KLETFVNFPIHDFNLTKYVANKNSS-----------RRQ----------LYELYALTNHY 779
           K++  V FP+   ++  ++  ++ S           RR           LY+LYA+ NH+
Sbjct: 627 KMQNTVKFPLTGMDMAPHIVKRSQSSWSLPSHWSPWRRPYGLGRDPEDYLYDLYAVCNHH 686

Query: 780 GGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           G M  GHYTA  K   + +WY FDDS + P++ED+V    AY+LFY+R
Sbjct: 687 GTMQGGHYTAFCKNSIDGQWYCFDDSDVHPLSEDEVCKQTAYILFYQR 734



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 100/214 (46%), Gaps = 7/214 (3%)

Query: 290 AIQCLVHTPEFARYFREDYRR---EINWQNPLGMVELLAFLLDGLHEDLNRVKHKPYIKS 346
           A+    +TP+ +R F+    +   +    +     E L +LLD +HEDLN++ H    +S
Sbjct: 163 ALWTFEYTPQHSRDFKNVVSKSALQFRGNSQHDAQEFLLWLLDRVHEDLNQIVHP---ES 219

Query: 347 KDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLP 406
           +     P EE       + +    S + ++ Q QY+S+L CP C K S TFDPF+ +SLP
Sbjct: 220 RPPRKPPVEEEEAVPEGSPLPAPGSFVQELFQAQYRSSLTCPHCQKQSNTFDPFLCISLP 279

Query: 407 LQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQ 466
           +    TR + VTV      +      V VP  G    L Q +     +  ++++ + E+ 
Sbjct: 280 IPVPHTRPLYVTVVYQGKCSHCMRVGVAVPLSGTVSRLRQAVAQETKIP-AQQIVLTEMY 338

Query: 467 NHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVK 500
           +    R   D    L  I++ D + A+  P+L +
Sbjct: 339 SDGFHRSFCDDDEDLEIIQEGDSIFAFETPELFR 372



 Score = 45.1 bits (105), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 22/31 (70%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF 304
           G+ GL N GNTCFMN+ +QCL +T  FA Y 
Sbjct: 85  GVAGLKNHGNTCFMNAILQCLSNTELFAEYL 115


>gi|395503240|ref|XP_003755978.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform 1
            [Sarcophilus harrisii]
          Length = 1100

 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 70/152 (46%), Positives = 102/152 (67%), Gaps = 3/152 (1%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A T   +L  CL  F +EE L   + +YC  CK RR + KK+++W+LP VL++HLKRFSY
Sbjct: 939  ASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCKTRRDSMKKIEIWKLPPVLLVHLKRFSY 998

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYV-ANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKL 793
                K KL+T V+FP+ + +L++YV   KN+ +R  Y L++++NHYGG+  GHYTA+ K 
Sbjct: 999  DGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKR--YNLFSVSNHYGGLDGGHYTAYCKN 1056

Query: 794  LDENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
                RW+ FDD  +S I+   V+S+AAY+LFY
Sbjct: 1057 AARQRWFKFDDHEVSDISVSSVRSSAAYILFY 1088



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/194 (38%), Positives = 97/194 (50%), Gaps = 48/194 (24%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------- 321
           G+   LTGL NLGNTC+MNS +QCL + P  A YF R  Y+ +IN  N LG         
Sbjct: 753 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNFYQDDINRSNLLGHKGEVAEEF 812

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELL FL+DGLHEDLN+  ++
Sbjct: 813 GIIMKALWTGQYRYISPKDFKITIGKINDQFSGYSQQDSQELLLFLMDGLHEDLNKADNR 872

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
              K ++ D   D + A+  W  H   N+SIIV + QGQ+KST+ C  C+K S TF+ FM
Sbjct: 873 KRHKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFM 932

Query: 402 YLSLPLQATTTRTM 415
           YLSLPL +T+  T+
Sbjct: 933 YLSLPLASTSKCTL 946


>gi|145513238|ref|XP_001442530.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124409883|emb|CAK75133.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1036

 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 128/494 (25%), Positives = 214/494 (43%), Gaps = 103/494 (20%)

Query: 1   WWQHWIDYVNQ---DQPN---NTGDGSSLLEH-FNSAG----SSASKRPSGIDNSDLVN- 48
           W+  W  YV     + PN   N      +LE+ FN +           P  I+   L+  
Sbjct: 168 WFNKWKSYVTDTALELPNENLNIEKEIEVLENIFNVSNDLDIEEQITAPGPINGFQLIQA 227

Query: 49  DATAEDPGAGPE------IVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLS 102
            +T E    GP+      + + + EG D+IL+  ++     + YGG     +++I     
Sbjct: 228 QSTLELDPFGPKSYTNYILKENIREGADFILVGHKILEYFKNIYGGFEI--KRLIVEHSQ 285

Query: 103 QTELAVEVYPLRLQLLVMPRGECSTIRI---SKKETIGELHRRACSIFYLNLEQICIWDY 159
             +  V++ P  +Q +++P  E   IR+   +  + I +L ++   I  LN E +  W +
Sbjct: 286 THQKYVDLVPRMIQYIILPNEEKHRIRLITANSSDLILDLCKKVNRILKLNNE-VRWWKF 344

Query: 160 Y-GHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLV 218
                +   + ++ R       ++ + I  +VL+        + I +  F+   +S + +
Sbjct: 345 NDSQSQQDFIKNLQRR------ELYKQISAKVLEKT------TMIDEINFS---SSDLFI 389

Query: 219 EPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGL 278
                 +     W  S+  +++ SS   +  N++      N           +  G+TGL
Sbjct: 390 ----CEIKYGRDWQMSEIDTKSMSS-FKSKINISDVPKIIN----------DSRKGVTGL 434

Query: 279 LNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV---------------- 321
            NLGNTCFMN+A+QCL +T E   Y    ++ + +N  NPLG                  
Sbjct: 435 QNLGNTCFMNAALQCLSNTYELTEYMVSNEFFQHLNCDNPLGTKGALATAYAELMKIMWY 494

Query: 322 -------------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDAD 350
                                          E L++LLDGLHEDLN+V  KP++K  +  
Sbjct: 495 GNNSAVSAYDLKRVIGKFAPQFYGYGQQDSHEFLSYLLDGLHEDLNKVLVKPFVKEVEIT 554

Query: 351 GRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQAT 410
              D E +  +W N+I RN S I  +  GQYKSTLVCP C++VS TFDP+M LSLP+ + 
Sbjct: 555 DETDFEASRIFWNNYILRNQSKIQQLMVGQYKSTLVCPNCHRVSKTFDPYMSLSLPIPSY 614

Query: 411 TTRTMTVTVFTSDG 424
           T   +++     +G
Sbjct: 615 TLIQLSMYFIYQNG 628



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/175 (37%), Positives = 99/175 (56%), Gaps = 17/175 (9%)

Query: 668  NGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVI 727
            N    ++ R    +L  CL +F +EE L   D WYC +CK+  QA+K+++++R P++L+I
Sbjct: 854  NNEQNRQLRKGEYTLEDCLRSFAKEEVLGKGDEWYCNRCKQHVQATKQMEIYRAPQLLII 913

Query: 728  HLKRFS------------YSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQL---YEL 772
            HLKRF             +      K+ T V+FP    NL  +V +K +    +   YEL
Sbjct: 914  HLKRFRSGNNRISSYGGFFYSGGSQKITTMVHFP-KKLNLNPFVLSKVNDSDPIDYNYEL 972

Query: 773  YALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            Y + NH+GG+G GHYTA       N+W +++DS  + +   +V+S AAYVLFYRR
Sbjct: 973  YGVDNHFGGLGGGHYTACAYNQLINKWVDYNDSS-ARLTSAEVESEAAYVLFYRR 1026


>gi|395503242|ref|XP_003755979.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform 2
            [Sarcophilus harrisii]
          Length = 1069

 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 70/152 (46%), Positives = 102/152 (67%), Gaps = 3/152 (1%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A T   +L  CL  F +EE L   + +YC  CK RR + KK+++W+LP VL++HLKRFSY
Sbjct: 908  ASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCKTRRDSMKKIEIWKLPPVLLVHLKRFSY 967

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYV-ANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKL 793
                K KL+T V+FP+ + +L++YV   KN+ +R  Y L++++NHYGG+  GHYTA+ K 
Sbjct: 968  DGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKR--YNLFSVSNHYGGLDGGHYTAYCKN 1025

Query: 794  LDENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
                RW+ FDD  +S I+   V+S+AAY+LFY
Sbjct: 1026 AARQRWFKFDDHEVSDISVSSVRSSAAYILFY 1057



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/194 (38%), Positives = 97/194 (50%), Gaps = 48/194 (24%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------- 321
           G+   LTGL NLGNTC+MNS +QCL + P  A YF R  Y+ +IN  N LG         
Sbjct: 722 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNFYQDDINRSNLLGHKGEVAEEF 781

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELL FL+DGLHEDLN+  ++
Sbjct: 782 GIIMKALWTGQYRYISPKDFKITIGKINDQFSGYSQQDSQELLLFLMDGLHEDLNKADNR 841

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
              K ++ D   D + A+  W  H   N+SIIV + QGQ+KST+ C  C+K S TF+ FM
Sbjct: 842 KRHKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFM 901

Query: 402 YLSLPLQATTTRTM 415
           YLSLPL +T+  T+
Sbjct: 902 YLSLPLASTSKCTL 915


>gi|449471131|ref|XP_002197001.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 [Taeniopygia
            guttata]
          Length = 1087

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 68/151 (45%), Positives = 101/151 (66%), Gaps = 1/151 (0%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A +   +L  CL  F +EE L   + +YC  CK RR + KK+++W+LP VL++HLKRFSY
Sbjct: 926  ASSSKCTLQECLRLFSKEEKLTDNNRFYCSHCKTRRDSLKKIEIWKLPPVLLVHLKRFSY 985

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
                K KL+T V+FP+   +L++YV    +S ++ Y L++++NHYGG+  GHYTA+ K  
Sbjct: 986  DGRWKQKLQTSVDFPLETLDLSQYVIGPKTSLKR-YNLFSVSNHYGGLDGGHYTAYCKNA 1044

Query: 795  DENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
             + RW+ FDD  +S I+   VKS+AAY+LFY
Sbjct: 1045 SKQRWFKFDDHEVSEISASSVKSSAAYILFY 1075



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/194 (37%), Positives = 96/194 (49%), Gaps = 48/194 (24%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------- 321
           G+   LTGL NLGNTC+MNS +QCL + P  A YF R  Y+ +IN  N LG         
Sbjct: 740 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLAEYFNRNLYQADINRSNFLGHKGEVAEEF 799

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELL FL+DGLHEDLN+  ++
Sbjct: 800 GVIMKALWAGQYKYISPKDFKITIGKINDQFSGYSQQDSQELLLFLMDGLHEDLNKADNR 859

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
              K ++ D   D   A+  W  H   N+SIIV + QGQ+KST+ C  C+K S TF+ FM
Sbjct: 860 KRYKEENNDHLDDSSAAEIAWHKHKQLNESIIVALFQGQFKSTVQCLTCHKRSRTFEAFM 919

Query: 402 YLSLPLQATTTRTM 415
           YLSLPL +++  T+
Sbjct: 920 YLSLPLASSSKCTL 933


>gi|357618136|gb|EHJ71230.1| putative ubiquitin specific protease [Danaus plexippus]
          Length = 1397

 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 156/567 (27%), Positives = 220/567 (38%), Gaps = 162/567 (28%)

Query: 34  ASKRPSGIDNSDLVNDATAEDPGAGPEIVD------------TLLEGRDYILLPQEVWNQ 81
           A+  P  +DNS L+        G GP +              TL + RD+ L+P  +W+ 
Sbjct: 249 AAPHPGPVDNSPLLG-------GGGPAVRALTGEGGTLRRDVTLAQHRDFELVPDALWHA 301

Query: 82  LHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQL---LVMPRGECS------------ 126
           L  WYG    L R+VI    +  EL  E+YPL++++   +  P+ + S            
Sbjct: 302 LALWYGAADPLPRQVIRPLHADVEL--ELYPLQMRIYRHVPGPQMDVSASGATTLGLLGA 359

Query: 127 -----------------------TIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHR 163
                                  T   S+  TI ++    C    L  E + +W      
Sbjct: 360 GAAGAGVGAGALYAAPPDRQLAYTAAFSRLATIKQVTEFLCGALGLAREDVRLWAL--GT 417

Query: 164 KHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKS 223
              L++D   TL    +     +L+EV +            D  + E+  +  L   S  
Sbjct: 418 GALLLDDERPTLQALRLDERSKLLLEVRN-----------PDLTWPEEIGA--LGAQSAC 464

Query: 224 SLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGN 283
            ++ A  W+  +        E  T+P L  A                     TGL NLGN
Sbjct: 465 GVTGAARWAERR--------ETLTAPQLPGA---------------------TGLHNLGN 495

Query: 284 TCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLG----------------------- 319
           TC+MN+A+Q + +T   ARYF    +  E+N  NPLG                       
Sbjct: 496 TCYMNAALQSVWNTGPLARYFNSGLHLYEVNSANPLGTGGSLALRFGELCKEVWSSSARS 555

Query: 320 ------------------------MVELLAFLLDGLHEDLNR-----VKHKPYIKSKDAD 350
                                     ELLA+LLD LHEDLNR         P   ++ A 
Sbjct: 556 IAPVRLRWCVSRYARDLAGGGQHDAQELLAWLLDALHEDLNRASPPAPAPSPAPPNQPAG 615

Query: 351 GRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQAT 410
            R D E A E WA H  RNDSII ++  GQ KS + C VC   SV FD F  LSLPL   
Sbjct: 616 PRADRESAAEAWAAHTVRNDSIISELFYGQLKSKVRCSVCASESVRFDTFNMLSLPLPME 675

Query: 411 TTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSI 470
           +     V V   DGS +P+ Y V V   G   DL + L  +C L     L VA +   +I
Sbjct: 676 SYVCAIVRVVLLDGS-VPTKYGVRVNSEGTYMDLKEKLSELCGLSPDLMLLVA-LSGATI 733

Query: 471 QRFLD-DPLISLSTIKDDDHLAAYRVP 496
            R L+ D  +S +  ++   L AY +P
Sbjct: 734 GRVLESDNKVSAAIARE---LVAYELP 757



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 2/122 (1%)

Query: 640  IVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPED 699
            +++ +DW    L        E +     +      A ++P+ L +CL AF  EE L  E 
Sbjct: 1085 VMLAIDWDPTALHLRYQSTREKVFVEHGSVQACLSAGSQPVDLASCLRAFTSEERL--EA 1142

Query: 700  MWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYV 759
             ++C  C   + A+KKL +WRLP VL+IHLKRF Y  +   K    V+FP  DF+ T Y+
Sbjct: 1143 RYHCGPCSALQPATKKLQMWRLPPVLIIHLKRFQYVNNKWIKSHKVVDFPFEDFDPTPYL 1202

Query: 760  AN 761
            A+
Sbjct: 1203 AS 1204



 Score = 48.5 bits (114), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 8/96 (8%)

Query: 739  KHKLET--FVNFPIHDFNLTKYVANKNSSRRQL----YELYALTNHYGGMGSGHYTAHIK 792
            + +LE+   +  P+ D NL  Y  ++    R +    Y LYA+ +H G +  GHY ++I+
Sbjct: 1269 RRRLESTSLITTPVVDDNLMDYHQHRLLPERDVFDLKYRLYAVVSHSGQLSGGHYVSYIR 1328

Query: 793  LLDENRWYNFDDSHISPINE-DDVKSAAAYVLFYRR 827
                  W  ++DS    +     + +AAAY+LFY R
Sbjct: 1329 -HSSGSWLCYNDSSCRELGSAPTLDAAAAYLLFYER 1363


>gi|258565055|ref|XP_002583272.1| hypothetical protein UREG_06239 [Uncinocarpus reesii 1704]
 gi|237906973|gb|EEP81374.1| hypothetical protein UREG_06239 [Uncinocarpus reesii 1704]
          Length = 1102

 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/330 (32%), Positives = 154/330 (46%), Gaps = 64/330 (19%)

Query: 224 SLSIAGGWSASKGTSRNHSSEISTSPNLASARDSD-NTLGSSGVTTR-GASVGLTGLLNL 281
           S  +A   + +KG  +N   +I T+   AS R S  +T+ S G   + G + G+TGL NL
Sbjct: 455 SSRLAALTTTAKGGPQN---KIKTAAATASGRASPVSTVASRGRKRKDGKTRGVTGLSNL 511

Query: 282 GNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPL---GMV---------------- 321
           GNTC+MNSA+QC+    E  +YF   +Y++++N  NPL   G V                
Sbjct: 512 GNTCYMNSALQCVRSVEELTQYFLSNEYKKDLNPSNPLAHNGEVAKAYANLLHQMFDENA 571

Query: 322 -----------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDA--- 349
                                        E + FLLDGL EDLNR+  KPYI+  D+   
Sbjct: 572 AASIAPRNFKHTVSKYGPSFSGYGQHDSQEFVLFLLDGLQEDLNRIHKKPYIEKPDSTDD 631

Query: 350 ---DGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLP 406
              D    E  AD  W  + ARNDS+I D+  G YKSTLVCPVC+KVS+ FDPF  L+L 
Sbjct: 632 MVSDKAALERFADRNWEIYKARNDSVITDLFAGMYKSTLVCPVCDKVSIIFDPFSNLTLQ 691

Query: 407 LQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQ 466
           L      +  +    + G ++     V + K+     L + +    +      L +AE+ 
Sbjct: 692 LPIENIWSRKIQYHPARGESI--ELEVDIDKNASVMALKEYVAKRVNT-DPRRLVMAEVF 748

Query: 467 NHSIQR-FLDDPLISLSTIKDDDHLAAYRV 495
           +  I + F + P IS   I   D +A Y +
Sbjct: 749 SRKIYKLFTNTPAISECNIGTSDVIAMYEL 778


>gi|365982984|ref|XP_003668325.1| hypothetical protein NDAI_0B00480 [Naumovozyma dairenensis CBS 421]
 gi|343767092|emb|CCD23082.1| hypothetical protein NDAI_0B00480 [Naumovozyma dairenensis CBS 421]
          Length = 1253

 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/148 (45%), Positives = 99/148 (66%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            ++L  CL+ F + E L   D WYCP CKE RQA+K+++LW  P++L+IHLKRF   RS  
Sbjct: 939  ITLDDCLKLFSKPEILSSNDSWYCPHCKEHRQATKQIELWNTPDILLIHLKRFENQRSFS 998

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRW 799
             K+   V FPI DF++++++  K   R  +Y+L A+ NHYGG+G GHYTA+ K  ++N+W
Sbjct: 999  DKIVDTVFFPITDFDISEHLVYKEDPRGNVYDLIAVDNHYGGLGGGHYTAYAKNANDNKW 1058

Query: 800  YNFDDSHISPINEDDVKSAAAYVLFYRR 827
            Y FDDS +S    +   + +AY+LFY R
Sbjct: 1059 YYFDDSRVSVTAPEKSIAGSAYLLFYVR 1086



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/269 (32%), Positives = 117/269 (43%), Gaps = 63/269 (23%)

Query: 245 ISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF 304
           I T P   S+    N L  + + +   ++GLT   NLGNTC+MNSA+QC+ H P F  YF
Sbjct: 302 IETKPKQKSSHWPSNFLIYNNLQSSPGTIGLT---NLGNTCYMNSALQCITHIPIFRDYF 358

Query: 305 -REDYRREINWQNPLGMV------------------------------------------ 321
               +++E+N  NPLG                                            
Sbjct: 359 LYGTFQKEVNEGNPLGYQGYMARAFSDLIQSLFGDNITSTTAYSPSYFKSTLGHFNSMFS 418

Query: 322 --------ELLAFLLDGLHEDLNRVKHKPYIKSKDA-------DGRPDEEVADEYWANHI 366
                   E LAFLLD LHEDLNR+  KPY++           D    + +AD+ W  H+
Sbjct: 419 GYLQQDSQEFLAFLLDSLHEDLNRIDKKPYVEKPSLPLTANLNDFDVVKRLADDTWKAHL 478

Query: 367 ARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSA 426
            RNDS+I D+    YKSTL CP C   SVTFDP+  L+LPL   +     V +F  +   
Sbjct: 479 LRNDSVITDLFVAMYKSTLKCPECQNTSVTFDPYNDLTLPLPVASIWHTKVKIFPLNSP- 537

Query: 427 LPSTYTVTVPKHGRCRDLIQVLGNICSLK 455
            P T  V + K     DL   +     +K
Sbjct: 538 -PCTLEVELAKTSTYLDLKSYISECTGIK 565


>gi|145532775|ref|XP_001452143.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124419820|emb|CAK84746.1| unnamed protein product [Paramecium tetraurelia]
          Length = 251

 Score =  141 bits (355), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 67/159 (42%), Positives = 99/159 (62%), Gaps = 11/159 (6%)

Query: 680 LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSM- 738
           ++L  CL    + E L  ++ WYC  CK+  QA K + +++  ++L+  LKRF  S    
Sbjct: 77  VTLQECLRFSEQPEQLAEDNAWYCKVCKDHVQAYKSMQIYKASDILIFTLKRFKASHGFF 136

Query: 739 KHKLETFVNFPIHDFNLTKYVANKN----------SSRRQLYELYALTNHYGGMGSGHYT 788
           K KLETFV FP+   +LT+++ N+N            ++ +Y+LYA++NH+GGMG GHYT
Sbjct: 137 KQKLETFVEFPVRGLDLTEFIINQNKPHENFQIEEEQKKLIYDLYAVSNHFGGMGGGHYT 196

Query: 789 AHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           A+ K     +WYNFDDS +S + ED V S +AYVLFY+R
Sbjct: 197 AYAKNHFNGQWYNFDDSQVSELEEDQVVSKSAYVLFYKR 235


>gi|260944048|ref|XP_002616322.1| hypothetical protein CLUG_03563 [Clavispora lusitaniae ATCC 42720]
 gi|238849971|gb|EEQ39435.1| hypothetical protein CLUG_03563 [Clavispora lusitaniae ATCC 42720]
          Length = 1210

 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 120/421 (28%), Positives = 183/421 (43%), Gaps = 80/421 (19%)

Query: 252 ASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRR 310
           A A  S ++   + +TT G ++GL+   NLGNTC+MNSA+QCLVH PE   YF  D + +
Sbjct: 289 AVASTSLSSFDMNKITTTGGNLGLS---NLGNTCYMNSALQCLVHVPEINFYFFYDLFEK 345

Query: 311 EINWQNPLG--------------------------------------------------M 320
           E+N  NPLG                                                   
Sbjct: 346 ELNRSNPLGNSGDVAVAFSNLLHKLFDYPGSSTSSVTPREFKYTIGRYSSMFHGYQQQDS 405

Query: 321 VELLAFLLDGLHEDLNRVKHKPYIKS---KDADGRPDEEVAD---EYWANHIARNDSIIV 374
            E L++LLD LHEDLNR+  KPY +    KD D    + + D   E W  H  RNDS+IV
Sbjct: 406 QEFLSWLLDALHEDLNRIYDKPYCEKPELKDEDVENPQAIVDLAKECWNLHKKRNDSVIV 465

Query: 375 DVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPS---TY 431
           D+  G Y+STL+CPVC K SVTFDPF  L+LPL          T+    GS L S     
Sbjct: 466 DLFTGMYQSTLLCPVCYKKSVTFDPFNDLTLPLPVNKKWYHEFTIVDLSGSYLDSFIMKL 525

Query: 432 TVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDD-------PLISLSTI 484
            V + K     DL+  L     + +         +N   + F +D       P+  +  I
Sbjct: 526 EVELSKSSTYEDLVAYLSKHLGVPRDFLFLFEIFRNFFYKDFQEDNYQQSFLPINEI--I 583

Query: 485 KDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISS 544
            DDD +  Y +P      + + +I+  ++++     T    + +G PL   +++    S 
Sbjct: 584 GDDDAIFVYIIPYTPDDRI-IPVINVAKDEDRSYDIT----EPFGIPLFIVLNKQSECSR 638

Query: 545 GKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAV 604
               S +++ +S    + S  ++      + +   + S E  + +S    +E   SS ++
Sbjct: 639 ---LSQIEKKVSLIANRLSTANSSEIKSQATIVGGEASDEVMTEASETSQEEAKESSASI 695

Query: 605 T 605
           T
Sbjct: 696 T 696



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/150 (44%), Positives = 101/150 (67%), Gaps = 2/150 (1%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            +SLY CL  F   E L  +D+WYCP+CKE R+A+K + +W   ++L  HLKRF  +RS+ 
Sbjct: 919  ISLYDCLRNFSTPEVLGDQDLWYCPRCKEHRRATKTIQVWSTGDILTFHLKRFQSARSLS 978

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRRQL-YELYALTNHYGGMGSGHYTAHIKLLDENR 798
             K+   V+FPI   ++T YV +   S++ L Y+L A+ NHYGG+G GHYTA +K   +N+
Sbjct: 979  DKINMVVDFPIEGLDMTDYVTSSQISKQPLIYDLIAVDNHYGGLGGGHYTASVKNFRDNK 1038

Query: 799  WYNFDDSHISPINE-DDVKSAAAYVLFYRR 827
            WY F+DS ++P+ +  +  + AAY+LFY++
Sbjct: 1039 WYYFNDSRVTPLEDPKECVTGAAYLLFYKK 1068


>gi|157817586|ref|NP_001099972.1| ubiquitin carboxyl-terminal hydrolase 8 [Rattus norvegicus]
 gi|149023197|gb|EDL80091.1| ubiquitin specific protease 8 (predicted) [Rattus norvegicus]
          Length = 1081

 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/151 (45%), Positives = 101/151 (66%), Gaps = 1/151 (0%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A T   +L  CL  F +EE L   + +YC  C+ RR + KK+++W+LP VL++HLKRFSY
Sbjct: 920  ASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSY 979

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
                K KL+T V+FP+ + +L++YV    SS ++ Y L++++NHYGG+  GHYTA+ K  
Sbjct: 980  DGRWKQKLQTSVDFPLENLDLSQYVIGPKSSLKK-YNLFSVSNHYGGLDGGHYTAYCKNA 1038

Query: 795  DENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
               RW+ FDD  +S I+   V+S+AAY+LFY
Sbjct: 1039 ARQRWFKFDDHEVSDISVSSVRSSAAYILFY 1069



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/194 (38%), Positives = 97/194 (50%), Gaps = 48/194 (24%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------- 321
           G+   LTGL NLGNTC+MNS +QCL + P  A YF R  Y+ +IN  N LG         
Sbjct: 734 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEF 793

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELL FL+DGLHEDLN+  ++
Sbjct: 794 GIIMKALWTGQYRYISPKDFKVTIGKINDQFAGSSQQDSQELLLFLMDGLHEDLNKADNR 853

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
              K ++ D   D + A+  W  H   N+SIIV + QGQ+KST+ C  C+K S TF+ FM
Sbjct: 854 KRHKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFM 913

Query: 402 YLSLPLQATTTRTM 415
           YLSLPL +T+  T+
Sbjct: 914 YLSLPLASTSKCTL 927


>gi|297846186|ref|XP_002890974.1| hypothetical protein ARALYDRAFT_336304 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297336816|gb|EFH67233.1| hypothetical protein ARALYDRAFT_336304 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 310

 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/273 (35%), Positives = 142/273 (52%), Gaps = 31/273 (11%)

Query: 323 LLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYK 382
           +L+ LLDGLH+DLN+++ + YI++K ++G    EVA E W N+  + DS+IVD   GQ  
Sbjct: 1   MLSSLLDGLHKDLNKLQQETYIEAKYSEGLLINEVAVEAWKNYKDQIDSLIVDAFHGQSS 60

Query: 383 STLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCR 442
           ST++C  C K S  FDPF  L LPL     R++ VTVF  +GS LP  YTV V K+G   
Sbjct: 61  STMICQDCGKTSFKFDPFKSLLLPL--VGFRSIMVTVFDGNGSNLPIPYTVIVAKNGVFN 118

Query: 443 DLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKA 502
           DL + + ++C L   E L+++++  +  + +  +PL  LSTI+D D+L  YR   LV K 
Sbjct: 119 DLSKAISDVCLLNSQERLELSQVDEY--KSYFVNPLDLLSTIEDTDYLVGYRF-NLVNKG 175

Query: 503 VFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPF---- 558
             L  +     +E      T Q               + +S   I + V+ ++SP     
Sbjct: 176 RELFKLEVYHGEEDTCNTYTLQ--------------KETLSGIDIDACVKILMSPLRRGH 221

Query: 559 ----LKKESLMHAD----SFDPSSMVTTVDPSG 583
               L   SL+ AD    SF+P    + V PS 
Sbjct: 222 DDSELPSFSLLLADFRASSFEPLESYSLVTPSA 254


>gi|344248888|gb|EGW04992.1| Ubiquitin carboxyl-terminal hydrolase 8 [Cricetulus griseus]
          Length = 1075

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 69/151 (45%), Positives = 101/151 (66%), Gaps = 1/151 (0%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A T   +L  CL  F +EE L   + +YC  C+ RR + KK+++W+LP VL++HLKRFSY
Sbjct: 914  ASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSY 973

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
                K KL+T V+FP+ + +L++YV    SS ++ Y L++++NHYGG+  GHYTA+ K  
Sbjct: 974  DGRWKQKLQTSVDFPLENLDLSQYVIGPKSSLKK-YNLFSVSNHYGGLDGGHYTAYCKNA 1032

Query: 795  DENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
               RW+ FDD  +S I+   VKS+AAY+LFY
Sbjct: 1033 ARQRWFKFDDHEVSDISVSSVKSSAAYILFY 1063



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/194 (38%), Positives = 97/194 (50%), Gaps = 48/194 (24%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------- 321
           G+   LTGL NLGNTC+MNS +QCL + P  A YF R  Y+ +IN  N LG         
Sbjct: 728 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEF 787

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELL FL+DGLHEDLN+  ++
Sbjct: 788 GIIMKALWTGQYRYISPKDFKVTIGKINDQFAGSSQQDSQELLLFLMDGLHEDLNKADNR 847

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
              K ++ D   D + A+  W  H   N+SIIV + QGQ+KST+ C  C+K S TF+ FM
Sbjct: 848 KRHKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFM 907

Query: 402 YLSLPLQATTTRTM 415
           YLSLPL +T+  T+
Sbjct: 908 YLSLPLASTSKCTL 921


>gi|354471265|ref|XP_003497863.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 [Cricetulus
            griseus]
          Length = 1079

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 69/151 (45%), Positives = 101/151 (66%), Gaps = 1/151 (0%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A T   +L  CL  F +EE L   + +YC  C+ RR + KK+++W+LP VL++HLKRFSY
Sbjct: 918  ASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSY 977

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
                K KL+T V+FP+ + +L++YV    SS ++ Y L++++NHYGG+  GHYTA+ K  
Sbjct: 978  DGRWKQKLQTSVDFPLENLDLSQYVIGPKSSLKK-YNLFSVSNHYGGLDGGHYTAYCKNA 1036

Query: 795  DENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
               RW+ FDD  +S I+   VKS+AAY+LFY
Sbjct: 1037 ARQRWFKFDDHEVSDISVSSVKSSAAYILFY 1067



 Score =  125 bits (315), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 108/224 (48%), Gaps = 48/224 (21%)

Query: 240 NHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPE 299
           N  ++ S  P    +R S + + +      G+   LTGL NLGNTC+MNS +QCL + P 
Sbjct: 702 NRENKKSCRPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPH 761

Query: 300 FARYF-REDYRREINWQNPLGMV------------------------------------- 321
            A YF R  Y+ +IN  N LG                                       
Sbjct: 762 LADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKVTIGKINDQ 821

Query: 322 ----------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDS 371
                     ELL FL+DGLHEDLN+  ++   K ++ D   D + A+  W  H   N+S
Sbjct: 822 FAGSSQQDSQELLLFLMDGLHEDLNKADNRKRHKEENNDHLDDFKAAEHAWQKHKQLNES 881

Query: 372 IIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTM 415
           IIV + QGQ+KST+ C  C+K S TF+ FMYLSLPL +T+  T+
Sbjct: 882 IIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTL 925


>gi|452843512|gb|EME45447.1| hypothetical protein DOTSEDRAFT_52723 [Dothistroma septosporum
           NZE10]
          Length = 1548

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 118/412 (28%), Positives = 189/412 (45%), Gaps = 78/412 (18%)

Query: 198 NCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSAS---KG--TSRNHSSEISTSPNLA 252
           N K+++   G    +A+++L+E  + +   AGG  +S   KG  T  N+ +  +     +
Sbjct: 423 NGKATMDLTGLGAVQAATILLE--EQTGGPAGGEFSSDSKKGLKTIFNNLNRKNNGSKPS 480

Query: 253 SARDSDNTLGSSGVTTRGASV------GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-R 305
           S   S  T  + G+ TRG +       G+ GL NLGNTC+MNSA+QC+    E A YF  
Sbjct: 481 STTASGATSPTPGMITRGRTRKDGRTRGVVGLTNLGNTCYMNSALQCIRSVEELAVYFLS 540

Query: 306 EDYRREINWQNPLGM--------------------------------------------- 320
           ++Y++EIN  NPLG                                              
Sbjct: 541 KEYKKEINNDNPLGHHGAMANAYFTVLAGVYGDNSGSAYTPREFKSKLGSIQPLFSGYGQ 600

Query: 321 ---VELLAFLLDGLHEDLNRVKHKPYIKSKDADGR----PD--EEVADEYWANHIARNDS 371
               E L+FL+D LHEDLNR+  KPYI++ D+D      P+   E+ + Y ANH  RNDS
Sbjct: 601 QDSQEFLSFLVDALHEDLNRIIKKPYIENPDSDDAKVHDPEYIHELGETYRANHQKRNDS 660

Query: 372 IIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTY 431
           +  D+  G YK+T+ CP C KVSVTFDP+  L++ L        T+T     G   P  +
Sbjct: 661 VATDLFGGFYKNTMECPNCEKVSVTFDPYSLLTVQLPMDHAFQHTITFIPLHGK--PINH 718

Query: 432 TVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLSTIKDDDHL 490
            + + K+   + L + +    +   S  L +AE+ +H I + F D+  ++ + I  +D++
Sbjct: 719 EIDIDKNSTIKILKESIAKKHNTDAS-RLWMAEVYSHKIYKVFADNITLAGANIVANDYI 777

Query: 491 AAYRVPKLV------KKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSI 536
             + +          KK+       +  +  P     +SQ  A+  P+ S +
Sbjct: 778 FIFELEHASTNAPSGKKSYTPYGTAKDVDVVPTEGMVSSQADAFAVPIFSRV 829



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/150 (41%), Positives = 96/150 (64%), Gaps = 2/150 (1%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            + L  C     + E L  ++ WYC +CKE R+A+K L +W LP++LV+H+KRF  +RS +
Sbjct: 1204 IDLEDCFVETGKREILSEDNAWYCNRCKEMRRAAKTLQIWTLPDILVVHMKRFGGTRSFR 1263

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRW 799
             K++  V++P+   ++   V  K   +  +Y+L+A+ NHYGG+G GHYTA  K   +  W
Sbjct: 1264 DKIDVLVDYPVEGLDMNDKVGLKEDGKDYVYDLFAVDNHYGGLGGGHYTAMAKNFHDGEW 1323

Query: 800  YNFDDSHISPI--NEDDVKSAAAYVLFYRR 827
            Y+++DS  S I  +   +KSAAAY+LFYRR
Sbjct: 1324 YDYNDSATSKISSSAAKLKSAAAYLLFYRR 1353


>gi|432868805|ref|XP_004071642.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 31-like [Oryzias
           latipes]
          Length = 1284

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 116/211 (54%), Gaps = 23/211 (10%)

Query: 640 IVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEP--LSLYTCLEAFLREEPLVP 697
           + + V+W ++  +    H  E  +   ++  + ++   +P   +L  C + + +EE L P
Sbjct: 520 VKIVVEWDKETKDYLFGHTEEEYVPDAESVYLHREQHHQPQACTLAQCFQLYTKEEQLAP 579

Query: 698 EDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTK 757
           +D W CP CK+ +Q   KL LW LP+VL++HLKRF      + K++  + FP+ + ++  
Sbjct: 580 DDAWRCPHCKQLQQGRIKLSLWTLPDVLILHLKRFRQEGDRRVKMQNMIRFPLMEMDMAP 639

Query: 758 YVANKNSS-----------RRQ----------LYELYALTNHYGGMGSGHYTAHIKLLDE 796
           +V  ++ S           RR           LY+LYA+ NH+G M  GHYTA+ K   +
Sbjct: 640 HVVKRSQSSWSLPSHWSPWRRSYGLGRNPDDYLYDLYAVCNHHGNMHGGHYTAYCKNSID 699

Query: 797 NRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            +WY FDDS +SPI +++V   +AY+LFY+R
Sbjct: 700 GQWYCFDDSEVSPIADEEVCQQSAYILFYQR 730



 Score = 83.2 bits (204), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 117/298 (39%), Gaps = 86/298 (28%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRRE-------------INWQNPLG 319
           G++GL N GNTCFMN+ +QCL +T  FA Y   E YR E             +  + PLG
Sbjct: 87  GVSGLKNHGNTCFMNAILQCLSNTELFAEYLVLEQYRGEDLDENRPKTNGVHLQRKGPLG 146

Query: 320 ----------------------------------------------MVELLAFLLDGLHE 333
                                                           E L +LLD +HE
Sbjct: 147 KGEVTEQLSGLVRALWTFEYTPQHSRDFKNAVSKNATQFKGNAQHDAQEFLLWLLDRVHE 206

Query: 334 DLNRVK--HKPYIKSK-DADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVC 390
           DLN V    +P +K   + D +  E  +    A       S + ++ Q QY+S+L CP C
Sbjct: 207 DLNSVNPISRPAMKPPIEEDDQSMEGPSPPLSAG------SFVQELFQAQYRSSLTCPHC 260

Query: 391 NKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSD--------GSALPSTYTVTVPKHGRCR 442
            K S TFDPF+ +SLP+    TR + VTV            G A+P   TV      R R
Sbjct: 261 QKQSNTFDPFLCISLPIPLPHTRPLYVTVVYQGKYSHCMRIGVAVPLKSTVY-----RLR 315

Query: 443 DLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVK 500
           D +     I      ++  + E+      R   D    L  I++ D + A+  P+  +
Sbjct: 316 DAVSRETKI----PMDQFVLTEMYYDGFHRSFCDDDDDLDIIQESDSIFAFETPETFR 369


>gi|389584168|dbj|GAB66901.1| ubiquitin carboxyl-terminal hydrolase 2 [Plasmodium cynomolgi
           strain B]
          Length = 1359

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/354 (29%), Positives = 154/354 (43%), Gaps = 85/354 (24%)

Query: 199 CKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSD 258
           C ++  D G+  +++S    E  +  +    G+S+ +      SS  + +          
Sbjct: 244 CLTNESDYGYTRRESSFRRSEKEEDCMR---GYSSGRTGGYGSSSSTAHAQGYTQGYTQG 300

Query: 259 NTLGSSGVTTRGAS--------------VGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF 304
            T G +   T+G S               G  GL+NLGNTCF+NS++QCL    +F+ YF
Sbjct: 301 CTQGYTQGQTQGHSHESMVKQISYIFQHGGDRGLINLGNTCFLNSSLQCLAKIKKFSNYF 360

Query: 305 RED-YRREINWQNPLGM------------------------------------------- 320
               +   IN+ NP+G                                            
Sbjct: 361 LSGTFWNHINYSNPVGQHGRLAKAYYETLIELWKIDKRSEPYAPKALKQAISEKRDEFYG 420

Query: 321 ------VELLAFLLDGLHEDLNRVKHKPYIKSKDADG--RPDEEVADEYWANHIARNDSI 372
                  ELLAFLLDGLHEDLN ++ KPY + K   G  +PD +VA+  W  H   N+SI
Sbjct: 421 YQQHDSQELLAFLLDGLHEDLNLIQKKPYYEEKLQGGLDKPDIDVAEASWNRHKEINNSI 480

Query: 373 IVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYT 432
           IVD+ QGQY+S L CP C KVS+ FDPFMYLS+PL       +   V  +  + +   ++
Sbjct: 481 IVDLFQGQYRSRLQCPKCKKVSIAFDPFMYLSIPLPPKKNHRIWFHVILNRDAPIGMRFS 540

Query: 433 ----------------VTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSI 470
                           +T+ K+ + +    +L N C +K S+E    E +N+ I
Sbjct: 541 CAFNGSQEVLKLKIFFLTIIKNLKVKRKNILLHNKCIIKNSKESSPHEGRNNHI 594



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 98/161 (60%), Gaps = 14/161 (8%)

Query: 678  EPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYS-R 736
            E   + TCL+ F  EE L   + WYC  CK   QA KKLDL+R+P +L++HLKRF+ + R
Sbjct: 1168 ERYGIDTCLKLFSEEEHLDENNTWYCGNCKLHVQAYKKLDLFRMPIILILHLKRFNNTNR 1227

Query: 737  SMKHKLETFVNFPIHD---FNLTKYVAN---KNSSRRQ-----LYELYALTNHYGGMGSG 785
             ++ K++++V +P  +    N++ Y+     K+ ++       LYEL  +  H GG+  G
Sbjct: 1228 WLRTKIDSYVYYPHKENEHLNMSPYILEDGLKHMTKMDPHYSPLYELIGVNCHTGGLCGG 1287

Query: 786  HYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYR 826
            HY A++KL    +WYNF+D+ ++ I+E  V +  AY+LFY+
Sbjct: 1288 HYFAYVKL--NGQWYNFNDTFVTTIDESQVNTKNAYLLFYQ 1326


>gi|126277553|ref|XP_001370028.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 [Monodelphis
            domestica]
          Length = 1102

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 70/152 (46%), Positives = 101/152 (66%), Gaps = 3/152 (1%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A T   +L  CL  F +EE L   + +YC  CK RR + KK+++W+LP VL++HLKRFSY
Sbjct: 941  ASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCKTRRDSMKKIEIWKLPPVLLVHLKRFSY 1000

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYV-ANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKL 793
                K KL+T V+FP+   +L++YV   KN+ +R  Y L++++NHYGG+  GHYTA+ K 
Sbjct: 1001 DGRWKQKLQTSVDFPLESLDLSQYVIGPKNNLKR--YNLFSVSNHYGGLDGGHYTAYCKN 1058

Query: 794  LDENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
                RW+ FDD  +S I+   V+S+AAY+LFY
Sbjct: 1059 AARQRWFKFDDHEVSDISVSSVRSSAAYILFY 1090



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/194 (38%), Positives = 97/194 (50%), Gaps = 48/194 (24%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------- 321
           G+   LTGL NLGNTC+MNS +QCL + P  A YF R  Y+ +IN  N LG         
Sbjct: 755 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNFYQDDINRSNLLGHKGEVAEEF 814

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELL FL+DGLHEDLN+  ++
Sbjct: 815 GIIMKALWTGQYRYISPKDFKITIGKINDQFSGYSQQDSQELLLFLMDGLHEDLNKADNR 874

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
              K ++ D   D + A+  W  H   N+SIIV + QGQ+KST+ C  C+K S TF+ FM
Sbjct: 875 KRHKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFM 934

Query: 402 YLSLPLQATTTRTM 415
           YLSLPL +T+  T+
Sbjct: 935 YLSLPLASTSKCTL 948


>gi|324501057|gb|ADY40477.1| Ubiquitin carboxyl-terminal hydrolase 32 [Ascaris suum]
          Length = 1248

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 145/559 (25%), Positives = 231/559 (41%), Gaps = 148/559 (26%)

Query: 33  SASKRPSGIDNSDLV-----NDATAEDP---GAGPEIVDTLLEGRDYILLPQEVWNQLHS 84
           S SK P  I+NS +V     ND  ++ P   G G  +   L EG+D+ +L   +W  L  
Sbjct: 335 SRSKVPP-INNSAIVASKAKNDWASKVPSLSGEGAPLRPGLQEGKDFEVLAPCLWRSLLR 393

Query: 85  WYGG----GPTLARKVISSGL------SQTELAVEVYPLRLQLL---------------- 118
           W+G     G +L R+V+ S        + +   VE+YPL L +L                
Sbjct: 394 WHGSAAREGVSLPRRVVPSSYVDPSSRTPSLPTVELYPLTLLILRHSTASGGWLQSAFEW 453

Query: 119 ------VMPRGECSTIRISKKETIGELHRRACSIFYL-NLEQICIW--DYYGHRKHALMN 169
                  M +    ++ +S+  T+GE+     +   + ++E   +W  +  G +   L++
Sbjct: 454 NASVKSSMRQSPWCSVCMSRSNTVGEVLSLLINQLRISDMESARLWAIEIDGKKSRKLLD 513

Query: 170 DMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAG 229
               TL D  I     +L+E+ +            D  + E+           S L I G
Sbjct: 514 KDSLTLHDLKIVSFAQLLLELRN-----------ADMSWPEEV----------SRLEIGG 552

Query: 230 GWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNS 289
           G                         DS+++ G    + +G    +TG+ N+GNTC+MNS
Sbjct: 553 G-------------------------DSESSEGEDPPSGKG----VTGIYNMGNTCYMNS 583

Query: 290 AIQCLVHTPEFARYF-----REDYR---------------------------------RE 311
           AIQCL +T     YF     ++D +                                 R+
Sbjct: 584 AIQCLSNTKPLTEYFIEGRHKQDMKKLSSTKGTVALEYGSVVAELWSGKKRNIAPIKLRD 643

Query: 312 INWQNPLGMV---------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYW 362
               N  G+          E L+ LLD LHEDLNRV +KPY++  D++GRPD  VA E W
Sbjct: 644 AISANAGGVFAERTQHDCQEFLSILLDLLHEDLNRVVNKPYVELTDSNGRPDVVVAKEAW 703

Query: 363 ANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTS 422
             H+ R  SIIVD+  GQ +S L C VC  +S  FD F  L LP+       + V V   
Sbjct: 704 DAHMRREQSIIVDLFTGQLRSLLTCTVCESLSSRFDAFTCLQLPIPIDHLLLIPVVVVKR 763

Query: 423 DGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQN-----HSIQRFLDDP 477
           DG  +P+ Y + +  + +       LG +CSL+ +   +V  +        ++ + ++D 
Sbjct: 764 DGH-VPTRYGLRLDGNTKIGHFKNELGKLCSLRPN-SFRVLCLNRTGQLMRNVSKSVEDD 821

Query: 478 LISLSTIKDDDHLAAYRVP 496
              +S   +D    A+ +P
Sbjct: 822 ATPISVYPNDALFYAFELP 840



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/194 (33%), Positives = 104/194 (53%), Gaps = 14/194 (7%)

Query: 640  IVVYVDWSQKLLEKYNTHFLENLL----EVFKNGPVTKKARTEPLSLYTCLEAFLREEPL 695
            + V VDW    L     H +E L      V +   V  +A     SL +CL  F R E L
Sbjct: 1060 VAVAVDWKPTALYLRYQHSVELLCCDDESVLRAWEVHYRA----CSLISCLSDFTRPELL 1115

Query: 696  VPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLET--FVNFPIHDF 753
              ++  YC +C  +    K L +WRLP +L+IH KRF Y  + +  +++   V+FP+ D 
Sbjct: 1116 --DEPIYCKKCNLKTPTKKSLSIWRLPRILIIHFKRFVYVDAERRWMKSSKVVDFPLWDL 1173

Query: 754  NLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINED 813
            +L+++V ++++     Y  +A+ NHYG M SGHY A+ +  + ++WY F+DS    + E 
Sbjct: 1174 DLSQWVLDQDAFDSAKYNCFAIANHYGAMASGHYVAYAR--NRDQWYAFNDSRCQAVKES 1231

Query: 814  DVKSAAAYVLFYRR 827
             +   +AY+LFY R
Sbjct: 1232 QIDKKSAYLLFYER 1245


>gi|189517300|ref|XP_692912.3| PREDICTED: ubiquitin carboxyl-terminal hydrolase 31 [Danio rerio]
          Length = 1295

 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 114/217 (52%), Gaps = 23/217 (10%)

Query: 634 PSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEP--LSLYTCLEAFLR 691
           P     + + V+W ++  E    H  E  +   ++  + ++   +P   +L  C + + +
Sbjct: 519 PGGPPHVKIVVEWDKETKEYLFGHTEEEYIPDAESVYLHREQHHQPQACTLAQCFQLYTK 578

Query: 692 EEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIH 751
           EE L P+D W CP C++ +Q   KL LW LP+VL++HLKRF      + K++  V FP+ 
Sbjct: 579 EEQLAPDDAWRCPHCRQLQQGRIKLSLWTLPDVLILHLKRFRQEGDRRVKMQNMVRFPLL 638

Query: 752 DFNLTKYVANKNSS-----------RRQ----------LYELYALTNHYGGMGSGHYTAH 790
             ++  +V  ++ S           RR           LY+LYA+ NH+G M  GHYTA+
Sbjct: 639 GMDMAPHVVKRSQSSWSLPSHWSPWRRPYGLGRNPDDYLYDLYAVCNHHGNMHGGHYTAY 698

Query: 791 IKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            K   + +WY FDDS + P+ ++DV    AY+LFY+R
Sbjct: 699 CKNSIDGQWYCFDDSEVQPVADEDVCQQTAYILFYQR 735



 Score = 73.6 bits (179), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 115/258 (44%), Gaps = 36/258 (13%)

Query: 257 SDNTLGSSGVTTRG-ASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDYRREI--- 312
           ++  +G  G   RG  +  L+GL+          A+    +TP+ +R F+    R     
Sbjct: 136 TNGVVGRKGAQDRGEVTEQLSGLVR---------ALWTFEYTPQHSRDFKNAVSRSAMQY 186

Query: 313 --NWQNPLGMVELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARND 370
             N Q+     E L +LLD +HEDLN + H P I+        +++ A E  +  ++   
Sbjct: 187 RGNAQH--DAQEFLLWLLDRVHEDLNHLVH-PNIRGSVKPPTEEDDAALEGPSPPLSAG- 242

Query: 371 SIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSD------- 423
           S + ++ Q QY+S+L CP C K S TFDPF+ +SLP+    TR + VTV           
Sbjct: 243 SFVQELFQAQYRSSLTCPHCQKQSNTFDPFLCISLPIPLPHTRPLYVTVVYQGKYSHCMR 302

Query: 424 -GSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLS 482
            G A+P   TV+     R R+ +     I      ++  + E+      R   D    L 
Sbjct: 303 IGVAVPLNSTVS-----RLREAVSRETKI----PPDQFVLTEMYYDGFHRSFCDDDDDLD 353

Query: 483 TIKDDDHLAAYRVPKLVK 500
            I++ D + A+  P+  +
Sbjct: 354 IIQESDSVFAFETPETFR 371



 Score = 47.4 bits (111), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 265 GVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFR-EDYR 309
           G  +R    G+ GL N GNTCFMN+ +QCL +T  FA Y   E YR
Sbjct: 80  GFLSRDKIPGVAGLKNHGNTCFMNAILQCLSNTELFAEYLALEQYR 125


>gi|190347982|gb|EDK40358.2| hypothetical protein PGUG_04456 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1169

 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 102/341 (29%), Positives = 152/341 (44%), Gaps = 72/341 (21%)

Query: 280 NLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV----------------- 321
           NLGNTC+MNSA+QCL+H PE   YF  D + +E+N  N LG                   
Sbjct: 344 NLGNTCYMNSALQCLLHVPEVNNYFFLDIHNKELNTTNALGFKGEVAMAFASLLHKAFDP 403

Query: 322 --------------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKD- 348
                                           E L++LLD LHEDLNR+ +KPY +  + 
Sbjct: 404 TSSVSSVSPRDFKYTIGHYSSMFSGYQQQDSQEFLSWLLDALHEDLNRILNKPYSEKPEL 463

Query: 349 -----ADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYL 403
                 + R   E+A++ W  H  RNDS+IVD+  G Y+STLVCP C K S+TFDPF  L
Sbjct: 464 SDDDIGNQRAIMELAEKCWMQHKQRNDSVIVDLFTGLYQSTLVCPDCGKTSITFDPFSDL 523

Query: 404 SLPLQATTTRTMTVTVF-TSDGSALP--STYTVTVPKHGRCRDLIQVLGNICSLKQSEEL 460
           +LPL        T+TV   SD S+     T  +++PK      L+  L     L +    
Sbjct: 524 TLPLPIEKKWFHTITVVDMSDKSSSNKIKTLEISLPKSSTFDSLVSYLSEFFHLPR-HYF 582

Query: 461 KVAEIQNHSIQRFLDDPLISLSTI-------KDDDHLAAYRVPKLVKKAVFLQLIHRLQE 513
            V E+ N +I +   +    L          +DDDH   Y +P    + + + +   L++
Sbjct: 583 FVFELYNDAIIKNFQEEYQQLKFFPINELLAEDDDHY-VYIIPHDPSRDIIVPVFSTLED 641

Query: 514 QEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRM 554
            +P          A+G PL   +  ++ +    +QS ++ +
Sbjct: 642 SDPSYKMV----HAFGIPLFLVLDENERLDYAVVQSKIEEL 678



 Score =  135 bits (341), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 69/157 (43%), Positives = 105/157 (66%), Gaps = 5/157 (3%)

Query: 673  KKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF 732
            +K R   +SL  CL++F   E L   D+WYCP+CK+ ++A+K + +W   ++L IHLKRF
Sbjct: 909  EKQRRTTVSLVDCLQSFSTPEVLGEFDLWYCPRCKDHKRATKTIQIWSTGDILTIHLKRF 968

Query: 733  SYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIK 792
              +RS   K++  V+FPI   +++ +VA  + S   +Y+L A+ NHYGG+G GHYTA +K
Sbjct: 969  QSARSFSDKIDLTVDFPIEGLDMSNFVAGGDESL--IYDLIAVDNHYGGLGGGHYTASVK 1026

Query: 793  LLDENRWYNFDDSHISPINEDDVK--SAAAYVLFYRR 827
               + +WY F+DSH+SPI ED  +  + AAY+LFYR+
Sbjct: 1027 NFRDGKWYYFNDSHVSPI-EDPTQCITGAAYLLFYRK 1062


>gi|167377770|ref|XP_001734533.1| ubiquitin carboxyl-terminal hydrolase [Entamoeba dispar SAW760]
 gi|165903900|gb|EDR29290.1| ubiquitin carboxyl-terminal hydrolase, putative [Entamoeba dispar
           SAW760]
          Length = 891

 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 77/214 (35%), Positives = 113/214 (52%), Gaps = 51/214 (23%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV----------- 321
           G+ GL NLGNTC+MNSAIQCL+HT    ++F +ED+++EIN  NPLG             
Sbjct: 273 GVCGLHNLGNTCYMNSAIQCLIHTIPLVQFFQKEDWKKEININNPLGTSGKLVEQWYQLL 332

Query: 322 -----------------------------------ELLAFLLDGLHEDLNRVKHKPYIKS 346
                                              EL+A+L+DG+HEDLNRV  KPYI++
Sbjct: 333 IKYWSGYSTITPREFKYAIGEFAPQFSGYQQHDSQELVAYLIDGIHEDLNRVLKKPYIET 392

Query: 347 KDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLP 406
            D +  PD E A   W  +  RNDSII D+   Q KS ++C VC+ +++ FDP+++LSL 
Sbjct: 393 PDYNNEPDNEWAIAEWNRYKQRNDSIITDLFAAQLKSKVICDVCHNINMRFDPYVFLSL- 451

Query: 407 LQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGR 440
             A   +  +V+++  D     +T T+ +   G+
Sbjct: 452 --AIPNKQNSVSIYVCD-KKYQNTKTIKLNIKGK 482



 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 63/156 (40%), Positives = 96/156 (61%), Gaps = 11/156 (7%)

Query: 678 EPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF----S 733
           +P++L  C E F  EE +   +  YC +CKE + + KK+DLW   ++L+IHLKRF     
Sbjct: 703 DPVTLEECFETFEAEELMDENNKVYCSKCKEHQLSHKKVDLWSTNQILIIHLKRFGNSCG 762

Query: 734 YSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKL 793
           YSR    K+ TFV+FPI   +LT++V + + +   +Y LY +TNH G +G GHY A  ++
Sbjct: 763 YSRD---KITTFVDFPIESLDLTRFVKHYDPTTPPIYNLYGVTNHMGSLGGGHYVASARV 819

Query: 794 LDENRWYNFDDSHISPI--NEDDVKSAAAYVLFYRR 827
             +  WY+F+DS  S I   ++++ S  AYVL+Y R
Sbjct: 820 GKD--WYDFNDSSTSKIEGTKENIVSKNAYVLYYIR 853


>gi|397477926|ref|XP_003810314.1| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal
           hydrolase 6 [Pan paniscus]
          Length = 1328

 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/176 (44%), Positives = 107/176 (60%), Gaps = 6/176 (3%)

Query: 322 ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQY 381
           ELLAFLLDGLHEDLNRV  KPY++ KD+DGRPD EVA E W NH+ RN SIIVD+  GQ 
Sbjct: 548 ELLAFLLDGLHEDLNRVHEKPYVELKDSDGRPDWEVAAEAWDNHLRRNRSIIVDLFHGQL 607

Query: 382 KSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRC 441
           +S + C  C  +SV FDPF + SLPL   +   + +TV   DG   P  Y + +    + 
Sbjct: 608 RSQVKCKTCGHISVRFDPFNFXSLPLPMDSYMDLEITVIKLDG-ITPVRYGLRLNMDEKY 666

Query: 442 RDLIQVLGNICSLKQSEELKVAEIQNHSIQRF-LDDPLISLSTIKDDDHLAAYRVP 496
             L + L ++C L  SE++ +AE+ + +I+ F  D+  + LS       L A+ +P
Sbjct: 667 TGLKKQLRDLCGLN-SEQILLAEVHDSNIKNFPQDNQKVQLSV---SGFLCAFEIP 718



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 72/125 (57%), Gaps = 2/125 (1%)

Query: 642  VYVDWSQKLLE-KYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDM 700
            + VDW    L  +Y T   E +++  ++   +++A+ EP++L +CL AF  EE L   +M
Sbjct: 915  IAVDWHPTALHLRYQTS-QERVVDKHESVEQSRRAQAEPINLDSCLRAFTSEEELGESEM 973

Query: 701  WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760
            +YC +CK    A+KKLDLWRLP  L+IHLKRF +      K +  V F    F+ + ++ 
Sbjct: 974  YYCSKCKTHCLATKKLDLWRLPPFLIIHLKRFQFVNDXWIKSQKIVKFLRESFDPSAFLV 1033

Query: 761  NKNSS 765
             ++ +
Sbjct: 1034 PRDPA 1038



 Score = 48.5 bits (114), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 1/61 (1%)

Query: 767  RQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYR 826
            + +Y LYA++ H G +  GHY  + K  +  +WY ++DS    ++ D++ + +AY+LFY 
Sbjct: 1231 KPIYNLYAISCHSGILSGGHYITYAKNPN-CKWYCYNDSSCEELHPDEIDTDSAYILFYE 1289

Query: 827  R 827
            +
Sbjct: 1290 Q 1290


>gi|366997123|ref|XP_003678324.1| hypothetical protein NCAS_0I03140 [Naumovozyma castellii CBS 4309]
 gi|342304195|emb|CCC71982.1| hypothetical protein NCAS_0I03140 [Naumovozyma castellii CBS 4309]
          Length = 1201

 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 104/351 (29%), Positives = 160/351 (45%), Gaps = 82/351 (23%)

Query: 272 SVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV--------- 321
           S+ +TGL+NLGNTC+MNSA+QC+ H P F  YF    Y +E+N  NPLG           
Sbjct: 317 SLEITGLVNLGNTCYMNSALQCITHIPVFREYFLYSGYEKELNTDNPLGYQGHVAEAFSE 376

Query: 322 -----------------------------------------ELLAFLLDGLHEDLNRVKH 340
                                                    E LAFLLD LHEDLNR+  
Sbjct: 377 LIRCLFGDKLVQFSAYAPNHFKATIGHFNSMFSGYLQQDSQEFLAFLLDSLHEDLNRIDK 436

Query: 341 KPYIKSKDA-------DGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKV 393
           KPY++           D R  +++AD+ W  H+ RNDS+I D+  G YKSTL CP C  +
Sbjct: 437 KPYVEKPSLPSTADLNDFRIVKKLADDTWKAHLLRNDSVITDLFVGLYKSTLECPECQNI 496

Query: 394 SVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICS 453
           S+TFDP+  L+LPL   +     + +F  +  A P    V +PK     +L   +   C+
Sbjct: 497 SITFDPYNDLTLPLPVKSMWHSHIKIFPLN--APPCILEVELPKSSSYEELKNYVA-TCA 553

Query: 454 LKQSEELKVAEIQNH----------SIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAV 503
                 L   EI N+          S  +FL  PL  L  I ++D++  Y +  +    +
Sbjct: 554 EIDPANLFGCEIFNNQFYTNYESPESNSKFL--PLQEL--IAENDNVVFYEL-SINPNDI 608

Query: 504 FLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRM 554
            + +++   E+E      +++   +G P   ++  ++V +   I+  +Q+M
Sbjct: 609 VVPVLNTKFEKE------STRPTYFGIPFFLTLHENEVANPTLIRYKLQQM 653



 Score =  139 bits (349), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 67/154 (43%), Positives = 101/154 (65%)

Query: 674  KARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFS 733
            + + + ++L  CL  F + E L   D WYCP CKE RQA+K++ LW  P+VL+IHLKRF 
Sbjct: 890  EEKNKEITLNDCLNLFSKPEILSLNDSWYCPTCKEHRQATKQIQLWNAPDVLLIHLKRFE 949

Query: 734  YSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKL 793
              +S   K++  V FPI DF++++++  K+  R  +Y+L A+ NHYGG+G GHYTA+ K 
Sbjct: 950  NQQSFSDKIDDVVQFPITDFDISEHLVYKDDPRGNVYDLIAVDNHYGGLGGGHYTAYAKN 1009

Query: 794  LDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
              + +WY FDDS ++    ++  + AAY+LFY R
Sbjct: 1010 STDGKWYYFDDSRVTETVAENSITGAAYLLFYLR 1043


>gi|146415514|ref|XP_001483727.1| hypothetical protein PGUG_04456 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1169

 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 102/341 (29%), Positives = 152/341 (44%), Gaps = 72/341 (21%)

Query: 280 NLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV----------------- 321
           NLGNTC+MNSA+QCL+H PE   YF  D + +E+N  N LG                   
Sbjct: 344 NLGNTCYMNSALQCLLHVPEVNNYFFLDIHNKELNTTNALGFKGEVAMAFASLLHKAFDP 403

Query: 322 --------------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKD- 348
                                           E L++LLD LHEDLNR+ +KPY +  + 
Sbjct: 404 TSLVSSVSPRDFKYTIGHYSSMFLGYQQQDSQEFLSWLLDALHEDLNRILNKPYSEKPEL 463

Query: 349 -----ADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYL 403
                 + R   E+A++ W  H  RNDS+IVD+  G Y+STLVCP C K S+TFDPF  L
Sbjct: 464 SDDDIGNQRAIMELAEKCWMQHKQRNDSVIVDLFTGLYQSTLVCPDCGKTSITFDPFSDL 523

Query: 404 SLPLQATTTRTMTVTVF-TSDGSALP--STYTVTVPKHGRCRDLIQVLGNICSLKQSEEL 460
           +LPL        T+TV   SD  +L    T  +++PK      L+  L     L +    
Sbjct: 524 TLPLPIEKKWFHTITVVDMSDKLSLNKIKTLEISLPKSSTFDSLVLYLSEFFHLPR-HYF 582

Query: 461 KVAEIQNHSIQRFLDDPLISLSTI-------KDDDHLAAYRVPKLVKKAVFLQLIHRLQE 513
            V E+ N +I +   +    L          +DDDH   Y +P    + + + +   L++
Sbjct: 583 FVFELYNDAIIKNFQEEYQQLKFFPINELLAEDDDHY-VYIIPHDPSRDIIVPVFSTLED 641

Query: 514 QEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRM 554
            +P          A+G PL   +  ++ +    +QS ++ +
Sbjct: 642 SDPSYKMV----HAFGIPLFLVLDENERLDYAVVQSKIEEL 678



 Score =  133 bits (334), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 104/157 (66%), Gaps = 5/157 (3%)

Query: 673  KKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF 732
            +K R   + L  CL++F   E L   D+WYCP+CK+ ++A+K + +W   ++L IHLKRF
Sbjct: 909  EKQRRTTVLLVDCLQSFSTPEVLGEFDLWYCPRCKDHKRATKTIQIWSTGDILTIHLKRF 968

Query: 733  SYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIK 792
              +RS   K++  V+FPI   +++ +VA  + S   +Y+L A+ NHYGG+G GHYTA +K
Sbjct: 969  QSARSFSDKIDLTVDFPIEGLDMSNFVAGGDESL--IYDLIAVDNHYGGLGGGHYTASVK 1026

Query: 793  LLDENRWYNFDDSHISPINEDDVK--SAAAYVLFYRR 827
               + +WY F+DSH+SPI ED  +  + AAY+LFYR+
Sbjct: 1027 NFRDGKWYYFNDSHVSPI-EDPTQCITGAAYLLFYRK 1062


>gi|74218724|dbj|BAE25218.1| unnamed protein product [Mus musculus]
          Length = 988

 Score =  140 bits (352), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 67/151 (44%), Positives = 101/151 (66%), Gaps = 1/151 (0%)

Query: 675 ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
           A T   +L  CL  F +EE L   + +YC  C+ RR + KK+++W+LP VL++HLKRFSY
Sbjct: 827 ASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSY 886

Query: 735 SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
               K KL+T V+FP+ + +L++YV    +S ++ Y L++++NHYGG+  GHYTA+ K  
Sbjct: 887 DGRWKQKLQTSVDFPLENLDLSQYVIGPKNSLKK-YNLFSVSNHYGGLDGGHYTAYCKNA 945

Query: 795 DENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
              RW+ FDD  +S I+   V+S+AAY+LFY
Sbjct: 946 ARQRWFKFDDHEVSDISVSSVRSSAAYILFY 976



 Score =  122 bits (306), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 72/194 (37%), Positives = 96/194 (49%), Gaps = 48/194 (24%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------- 321
           G+   LTGL NLGNTC+MNS +QCL + P  A YF R  Y+ +IN  N LG         
Sbjct: 641 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEF 700

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELL FL+DGLHEDLN+  ++
Sbjct: 701 GIIMKALWTGQYRYISPKDFKVTIGKINDQFAGSSQQDSQELLLFLMDGLHEDLNKADNR 760

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
              K ++ +   D + A+  W  H   N+SIIV + QGQ+KST+ C  C + S TF+ FM
Sbjct: 761 KRHKEENNEHLDDLQAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCRRRSRTFEAFM 820

Query: 402 YLSLPLQATTTRTM 415
           YLSLPL +T+  T+
Sbjct: 821 YLSLPLASTSKCTL 834


>gi|11414862|dbj|BAB18534.1| deubiquitinating enzyme UBPY [Mus musculus]
          Length = 1080

 Score =  140 bits (352), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 67/151 (44%), Positives = 101/151 (66%), Gaps = 1/151 (0%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A T   +L  CL  F +EE L   + +YC  C+ RR + KK+++W+LP VL++HLKRFSY
Sbjct: 919  ASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSY 978

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
                K KL+T V+FP+ + +L++YV    +S ++ Y L++++NHYGG+  GHYTA+ K  
Sbjct: 979  DGRWKQKLQTSVDFPLENLDLSQYVIGPKNSLKK-YNLFSVSNHYGGLDGGHYTAYCKNA 1037

Query: 795  DENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
               RW+ FDD  +S I+   V+S+AAY+LFY
Sbjct: 1038 ARQRWFKFDDHEVSDISVSSVRSSAAYILFY 1068



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/194 (34%), Positives = 90/194 (46%), Gaps = 48/194 (24%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------- 321
           G+   LTGL NLGNTC+MNS +QCL + P  A YF R  Y+ +IN  N LG         
Sbjct: 733 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEF 792

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELL  L+DGLHEDLN+  ++
Sbjct: 793 GIIMKALWTGQYRYISPKDFKVTIGKINDQFAGSSQQDSQELLLSLMDGLHEDLNKADNR 852

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
              K ++ +   +          H   N+SII  + QGQ+K+T+ C  C + S TF+ FM
Sbjct: 853 KRHKEENNEHLDEPAGGRARLQKHKQLNESIIRLLFQGQFKATVQCLTCRRRSRTFEAFM 912

Query: 402 YLSLPLQATTTRTM 415
           YLSLPL +T+  T+
Sbjct: 913 YLSLPLASTSKCTL 926


>gi|407929035|gb|EKG21874.1| Peptidase C19 ubiquitin carboxyl-terminal hydrolase 2 [Macrophomina
            phaseolina MS6]
          Length = 1470

 Score =  140 bits (352), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 59/148 (39%), Positives = 98/148 (66%), Gaps = 1/148 (0%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            ++L  C     + E L  E+ WYC +CKE R+ASK L++W  P++LV+HLKRF  +R  +
Sbjct: 1117 ITLEDCFAETAKTEILSEENAWYCNRCKELRRASKTLEIWTAPDILVVHLKRFGANRGFR 1176

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRW 799
             K++  V+FPI   ++T+ V   +  +  +Y+L+A+ NH+GG+G GHYTA  K   + +W
Sbjct: 1177 DKVDILVDFPIEGLDITERVG-LSEGKPLVYDLFAVDNHFGGLGGGHYTAVAKNFYDGQW 1235

Query: 800  YNFDDSHISPINEDDVKSAAAYVLFYRR 827
            Y+++DS +S  +   + +++AY+LFYRR
Sbjct: 1236 YDYNDSMVSKKSPSSIVNSSAYLLFYRR 1263



 Score =  139 bits (349), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 150/551 (27%), Positives = 224/551 (40%), Gaps = 135/551 (24%)

Query: 68  GRDYILLPQEVWNQLHSWYGGGPTL------ARKVISSGLSQTELAVEVYPLRLQLLVM- 120
           G DY + P+E WN +  WYG  P +      AR     G +   +  E+YP  L +  + 
Sbjct: 175 GEDYEVFPEEAWNLMVEWYGVKPGVPPIIRYARDTAPPGSTLQNVQYEIYPPFLTIRKLR 234

Query: 121 -----------PRGECSTIRI--SKKETIGELHRRACSIFYLNLE-QICIW--------- 157
                           + +R+  S+ E   +  +RA     + +  ++ IW         
Sbjct: 235 NDSEPMSAQKIKDNSSNAVRLLSSRSEKFQDFLKRAKEAAGIPMSTKVQIWRVLEPIQAG 294

Query: 158 --DYYGHRKHALMNDMDRTLDDANI-------------QMDQDILVEVLDNVNGTNCKSS 202
                 +R   L     R    A                M +    E++D+ + TN   +
Sbjct: 295 VTGQQANRAEVLTPATSRNSSPARTPPTPLLIDVATFTAMAEGTQREMVDHKDETN---N 351

Query: 203 IQDNGFAEKKASSVLVEPSKSSLSI--------AGGWSAS---KGTSRNHSSEISTS--P 249
            + NG A+      LV  S S L I        AGG   S   +  +  H   +STS  P
Sbjct: 352 PKYNGSAKMD----LVGLSTSQLIILEEQIGGPAGGEFVSDNARKVASKHGVSLSTSKIP 407

Query: 250 NLA--SARDSDNTLG--SSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF- 304
           +    S R S    G  + G T  G + G  GL NLGNTC+MNSA+QC+    E   YF 
Sbjct: 408 DSKGDSGRSSPAPGGPMTRGRTKNGRTRGTVGLSNLGNTCYMNSALQCIRSVEELTAYFL 467

Query: 305 REDYRREINWQNPLG--------------------------------------------- 319
           +  ++ E+N  NPLG                                             
Sbjct: 468 QSKFKEELNVDNPLGHGGSIAKAYAGLLAAIYGEDATTSFAPKNFKFALGRAQPMFSGYG 527

Query: 320 ---MVELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEE------VADEYWANHIARND 370
                E L+FL+DGLHEDLNR+  KPYI++ D+D    ++      + ++Y   H ARND
Sbjct: 528 QQDSQEFLSFLVDGLHEDLNRIIKKPYIENPDSDDNTHKDPEAIKALGEKYREIHRARND 587

Query: 371 SIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPST 430
           SI +D+  G YK+T+VCP C+KVS+TFDP+  L+L L        TVT     G   P  
Sbjct: 588 SIAMDLFNGFYKNTMVCPECDKVSITFDPYSSLTLQLPIEKNWQHTVTFMPLVGR--PVQ 645

Query: 431 YTVTVPKHGRCRDLIQVLGNICSLKQS-----EELKVAEIQNHSI-QRFLDDPLISLSTI 484
             V V  +   R +  V   I +  +        + ++EI +H   + F D   I  S+I
Sbjct: 646 IDVDVDPN---RPISAVKEYIAARYREHSVDPRRIMMSEIYSHKFYKHFEDRQSIVESSI 702

Query: 485 KDDDHLAAYRV 495
           ++ D + AY +
Sbjct: 703 QERDEIIAYEL 713


>gi|405968000|gb|EKC33109.1| Ubiquitin carboxyl-terminal hydrolase 8 [Crassostrea gigas]
          Length = 1129

 Score =  140 bits (352), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 63/145 (43%), Positives = 90/145 (62%), Gaps = 1/145 (0%)

Query: 681  SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKH 740
            SL  CL+ FL+EE L     W CP+CK  R A KK+D+WRLP +L+I L RF Y    + 
Sbjct: 972  SLGECLKLFLKEERLTGSSRWRCPRCKVDRDAVKKIDIWRLPRILLIGLNRFVYKGQWRE 1031

Query: 741  KLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWY 800
            K+ +FV+FP  + +L  Y+    S +   Y LYA +NH G +  GHYTA+ +     +W+
Sbjct: 1032 KINSFVDFPTRNLDLNPYLEGPKSIKSS-YRLYATSNHSGTLDGGHYTAYCRNPCTEKWF 1090

Query: 801  NFDDSHISPINEDDVKSAAAYVLFY 825
             +DD H+S + E DV+S+ AYVL+Y
Sbjct: 1091 KYDDDHVSEMKESDVRSSLAYVLYY 1115



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/159 (42%), Positives = 87/159 (54%), Gaps = 25/159 (15%)

Query: 274 GLTGLLNLGNTCFMNSAIQ--CLVHTPEFARYFR----------------EDYRREINWQ 315
            LTGL NLGNTC+MNS IQ   L +  E A  F                  D++  +   
Sbjct: 807 ALTGLRNLGNTCYMNSTIQESQLGYYGEIADDFSVIIRALWSGQYKCITPRDFKYVVGKH 866

Query: 316 NP--LGMVE-----LLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIAR 368
           NP   G  +      L FL+DGLHE LNRVK +P I  +D D   D + A+  W +H   
Sbjct: 867 NPDFAGTTQQDSHDFLTFLMDGLHEGLNRVKKRPEIPEQDNDKMGDSQAAELAWKHHQLC 926

Query: 369 NDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPL 407
           N+SIIV++ QGQ KSTL+C  C K+SV F  FM+L+LP+
Sbjct: 927 NESIIVELFQGQLKSTLMCLHCQKMSVNFQAFMFLTLPI 965


>gi|242211549|ref|XP_002471612.1| predicted protein [Postia placenta Mad-698-R]
 gi|220729288|gb|EED83165.1| predicted protein [Postia placenta Mad-698-R]
          Length = 1026

 Score =  140 bits (352), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 73/170 (42%), Positives = 97/170 (57%), Gaps = 19/170 (11%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
             R   +SLY CL+AF++EE +   D W CP CK  R+A+K L L RLP VL+IHLKRFS 
Sbjct: 856  GRGSKVSLYQCLDAFVKEEVMEKSDAWNCPHCKALRKATKNLSLSRLPPVLLIHLKRFSS 915

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYV-------------ANKNSSRRQL----YELYALTN 777
                  K+ETFV++PI   +LT Y+              +++  R Q+    Y+LY +TN
Sbjct: 916  KGHFTDKIETFVDYPIRSLDLTNYMPPPLPPGVDMGLQPSRDDPRAQVPPYRYDLYGVTN 975

Query: 778  HYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            H+G + SGHYTA I       W   DDS IS  +  DV    AY+LFY+R
Sbjct: 976  HFGTLSSGHYTAFIS--SRGGWLYCDDSRISQADTKDVVGKPAYMLFYKR 1023



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 92/188 (48%), Gaps = 53/188 (28%)

Query: 273 VGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV---------- 321
           +G +GL NLGNTC+MNS IQCL  T  F+R+F +  ++  +N  NP+G            
Sbjct: 666 IGTSGLKNLGNTCYMNSTIQCLSATVPFSRFFTDGRWKSAVNMMNPMGTKGNLANAFANI 725

Query: 322 -------------------------------------ELLAFLLDGLHEDLNRVKHKPYI 344
                                                E L FLLDGLHEDLNRV  KP I
Sbjct: 726 LRDMWQGEMQCLSPVTFRRSLCMYAPQFGGTEQHDSQEFLNFLLDGLHEDLNRVLQKPQI 785

Query: 345 KS-----KDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDP 399
           ++      + +  P +   ++ W     RNDS++VD  QGQ+++ L C  C+K S T++ 
Sbjct: 786 ETTPEREAELERLPTQIAREQEWQIWRMRNDSLVVDFFQGQFRNRLECLTCHKTSTTYNT 845

Query: 400 FMYLSLPL 407
           FMYL+LP+
Sbjct: 846 FMYLTLPI 853


>gi|74137217|dbj|BAE21996.1| unnamed protein product [Mus musculus]
          Length = 1080

 Score =  140 bits (352), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 67/151 (44%), Positives = 101/151 (66%), Gaps = 1/151 (0%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A T   +L  CL  F +EE L   + +YC  C+ RR + KK+++W+LP VL++HLKRFSY
Sbjct: 919  ASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSY 978

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
                K KL+T V+FP+ + +L++YV    +S ++ Y L++++NHYGG+  GHYTA+ K  
Sbjct: 979  DGRWKQKLQTSVDFPLENLDLSQYVIGPKNSLKK-YNLFSVSNHYGGLDGGHYTAYCKNA 1037

Query: 795  DENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
               RW+ FDD  +S I+   V+S+AAY+LFY
Sbjct: 1038 ARQRWFKFDDHEVSDISVSSVRSSAAYILFY 1068



 Score =  122 bits (306), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 72/194 (37%), Positives = 96/194 (49%), Gaps = 48/194 (24%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------- 321
           G+   LTGL NLGNTC+MNS +QCL + P  A YF R  Y+ +IN  N LG         
Sbjct: 733 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEF 792

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELL FL+DGLHEDLN+  ++
Sbjct: 793 GIIMKALWTGQYRYISPKDFKVTIGKINDQFAGSSQQDSQELLLFLMDGLHEDLNKADNR 852

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
              K ++ +   D + A+  W  H   N+SIIV + QGQ+KST+ C  C + S TF+ FM
Sbjct: 853 KRHKEENNEHLDDLQAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCRRRSRTFEAFM 912

Query: 402 YLSLPLQATTTRTM 415
           YLSLPL +T+  T+
Sbjct: 913 YLSLPLASTSKCTL 926


>gi|31981044|ref|NP_062703.2| ubiquitin carboxyl-terminal hydrolase 8 isoform 2 [Mus musculus]
 gi|44888442|sp|Q80U87.2|UBP8_MOUSE RecName: Full=Ubiquitin carboxyl-terminal hydrolase 8; AltName:
            Full=Deubiquitinating enzyme 8; AltName: Full=Ubiquitin
            isopeptidase Y; Short=mUBPy; AltName: Full=Ubiquitin
            thioesterase 8; AltName:
            Full=Ubiquitin-specific-processing protease 8
 gi|29747898|gb|AAH50947.1| Ubiquitin specific peptidase 8 [Mus musculus]
 gi|38181867|gb|AAH61465.1| Ubiquitin specific peptidase 8 [Mus musculus]
 gi|42490777|gb|AAH66126.1| Ubiquitin specific peptidase 8 [Mus musculus]
          Length = 1080

 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 67/151 (44%), Positives = 101/151 (66%), Gaps = 1/151 (0%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A T   +L  CL  F +EE L   + +YC  C+ RR + KK+++W+LP VL++HLKRFSY
Sbjct: 919  ASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSY 978

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
                K KL+T V+FP+ + +L++YV    +S ++ Y L++++NHYGG+  GHYTA+ K  
Sbjct: 979  DGRWKQKLQTSVDFPLENLDLSQYVIGPKNSLKK-YNLFSVSNHYGGLDGGHYTAYCKNA 1037

Query: 795  DENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
               RW+ FDD  +S I+   V+S+AAY+LFY
Sbjct: 1038 ARQRWFKFDDHEVSDISVSSVRSSAAYILFY 1068



 Score =  122 bits (306), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 72/194 (37%), Positives = 96/194 (49%), Gaps = 48/194 (24%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------- 321
           G+   LTGL NLGNTC+MNS +QCL + P  A YF R  Y+ +IN  N LG         
Sbjct: 733 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEF 792

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELL FL+DGLHEDLN+  ++
Sbjct: 793 GIIMKALWTGQYRYISPKDFKVTIGKINDQFAGSSQQDSQELLLFLMDGLHEDLNKADNR 852

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
              K ++ +   D + A+  W  H   N+SIIV + QGQ+KST+ C  C + S TF+ FM
Sbjct: 853 KRHKEENNEHLDDLQAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCRRRSRTFEAFM 912

Query: 402 YLSLPLQATTTRTM 415
           YLSLPL +T+  T+
Sbjct: 913 YLSLPLASTSKCTL 926


>gi|148696216|gb|EDL28163.1| ubiquitin specific peptidase 8, isoform CRA_a [Mus musculus]
          Length = 1108

 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 67/151 (44%), Positives = 101/151 (66%), Gaps = 1/151 (0%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A T   +L  CL  F +EE L   + +YC  C+ RR + KK+++W+LP VL++HLKRFSY
Sbjct: 947  ASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSY 1006

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
                K KL+T V+FP+ + +L++YV    +S ++ Y L++++NHYGG+  GHYTA+ K  
Sbjct: 1007 DGRWKQKLQTSVDFPLENLDLSQYVIGPKNSLKK-YNLFSVSNHYGGLDGGHYTAYCKNA 1065

Query: 795  DENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
               RW+ FDD  +S I+   V+S+AAY+LFY
Sbjct: 1066 ARQRWFKFDDHEVSDISVSSVRSSAAYILFY 1096



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 72/194 (37%), Positives = 96/194 (49%), Gaps = 48/194 (24%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------- 321
           G+   LTGL NLGNTC+MNS +QCL + P  A YF R  Y+ +IN  N LG         
Sbjct: 761 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEF 820

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELL FL+DGLHEDLN+  ++
Sbjct: 821 GIIMKALWTGQYRYISPKDFKVTIGKINDQFAGSSQQDSQELLLFLMDGLHEDLNKADNR 880

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
              K ++ +   D + A+  W  H   N+SIIV + QGQ+KST+ C  C + S TF+ FM
Sbjct: 881 KRHKEENNEHLDDLQAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCRRRSRTFEAFM 940

Query: 402 YLSLPLQATTTRTM 415
           YLSLPL +T+  T+
Sbjct: 941 YLSLPLASTSKCTL 954


>gi|452984513|gb|EME84270.1| hypothetical protein MYCFIDRAFT_214678 [Pseudocercospora fijiensis
           CIRAD86]
          Length = 1694

 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 99/311 (31%), Positives = 147/311 (47%), Gaps = 64/311 (20%)

Query: 252 ASARDSDNTLGSSGVTTRG------ASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF- 304
           AS   S  T  + G+ TRG       + G+TGL NLGNTC+MNSA+QC+    E A YF 
Sbjct: 626 ASTTASGRTSPAPGMVTRGRARKDGKTRGVTGLTNLGNTCYMNSALQCIRSVEELAIYFL 685

Query: 305 REDYRREINWQNPLGM-------------------------------------------- 320
            + ++ +IN  NPLG                                             
Sbjct: 686 TKKFKSDINDDNPLGYHGAMAHAYANVLEGIYGSGSTSTFSPNEFKRKLGTYQPMFSGYG 745

Query: 321 ----VELLAFLLDGLHEDLNRVKHKPYIKSKDAD-GRPDE-----EVADEYWANHIARND 370
                E L+FL+D LHEDLNR++ KPYI++ D+D  R  +     E+ + Y  NH  RND
Sbjct: 746 QQDSQEFLSFLVDALHEDLNRIRKKPYIENPDSDDARVHDAEYIVELGEIYRNNHRQRND 805

Query: 371 SIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPST 430
           SI +D+  G YK+T+ CP C+KVSVTFDP+  +++ L    T    +T     G   P  
Sbjct: 806 SIAMDLFSGFYKNTMECPTCDKVSVTFDPYSLVTVQLPMEITLQHNITYVPLHGK--PVI 863

Query: 431 YTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDP-LISLSTIKDDDH 489
           + + V K+   + L   L    +   +  + +AE+ NH I +  DD   I+ + I+ +D 
Sbjct: 864 HELDVDKNWTIKALKDHLAKKHAGASANAMWMAEVYNHQIFKVFDDASTIAETNIQSNDF 923

Query: 490 LAAYRVPKLVK 500
           +  Y + +  K
Sbjct: 924 IWIYELEQAPK 934



 Score =  125 bits (315), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 60/149 (40%), Positives = 95/149 (63%), Gaps = 1/149 (0%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            + L  C +   R E L   + WYC +CKE RQA+K L++W LP++LV+HLKRF  +RS +
Sbjct: 1362 VDLDDCFDVTRRREILSEGNEWYCNRCKEMRQAAKTLEIWTLPDILVVHLKRFGGNRSFR 1421

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRW 799
             K++  V++P+   ++   V  K   +   Y+L+A+  H+GG+G GHYTA++K   +  W
Sbjct: 1422 DKIDLLVDYPVEGLDMNDKVGLKEGDKDYTYDLFAVDLHFGGLGGGHYTAYVKNFFDGEW 1481

Query: 800  YNFDDSHISPINED-DVKSAAAYVLFYRR 827
            Y+ +DS +  +     ++SAAAY+LFYRR
Sbjct: 1482 YDCNDSSVYKLGSTHKIQSAAAYLLFYRR 1510


>gi|28972047|dbj|BAC65477.1| mKIAA0055 protein [Mus musculus]
          Length = 1108

 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 67/151 (44%), Positives = 101/151 (66%), Gaps = 1/151 (0%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A T   +L  CL  F +EE L   + +YC  C+ RR + KK+++W+LP VL++HLKRFSY
Sbjct: 947  ASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSY 1006

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
                K KL+T V+FP+ + +L++YV    +S ++ Y L++++NHYGG+  GHYTA+ K  
Sbjct: 1007 DGRWKQKLQTSVDFPLENLDLSQYVIGPKNSLKK-YNLFSVSNHYGGLDGGHYTAYCKNA 1065

Query: 795  DENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
               RW+ FDD  +S I+   V+S+AAY+LFY
Sbjct: 1066 ARQRWFKFDDHEVSDISVSSVRSSAAYILFY 1096



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 72/194 (37%), Positives = 96/194 (49%), Gaps = 48/194 (24%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------- 321
           G+   LTGL NLGNTC+MNS +QCL + P  A YF R  Y+ +IN  N LG         
Sbjct: 761 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEF 820

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELL FL+DGLHEDLN+  ++
Sbjct: 821 GIIMKALWTGQYRYISPKDFKVTIGKINDQFAGSSQQDSQELLLFLMDGLHEDLNKADNR 880

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
              K ++ +   D + A+  W  H   N+SIIV + QGQ+KST+ C  C + S TF+ FM
Sbjct: 881 KRHKEENNEHLDDLQAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCRRRSRTFEAFM 940

Query: 402 YLSLPLQATTTRTM 415
           YLSLPL +T+  T+
Sbjct: 941 YLSLPLASTSKCTL 954


>gi|148696218|gb|EDL28165.1| ubiquitin specific peptidase 8, isoform CRA_c [Mus musculus]
          Length = 1080

 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 67/151 (44%), Positives = 101/151 (66%), Gaps = 1/151 (0%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A T   +L  CL  F +EE L   + +YC  C+ RR + KK+++W+LP VL++HLKRFSY
Sbjct: 919  ASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSY 978

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
                K KL+T V+FP+ + +L++YV    +S ++ Y L++++NHYGG+  GHYTA+ K  
Sbjct: 979  DGRWKQKLQTSVDFPLENLDLSQYVIGPKNSLKK-YNLFSVSNHYGGLDGGHYTAYCKNA 1037

Query: 795  DENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
               RW+ FDD  +S I+   V+S+AAY+LFY
Sbjct: 1038 ARQRWFKFDDHEVSDISVSSVRSSAAYILFY 1068



 Score =  122 bits (306), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 72/194 (37%), Positives = 96/194 (49%), Gaps = 48/194 (24%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------- 321
           G+   LTGL NLGNTC+MNS +QCL + P  A YF R  Y+ +IN  N LG         
Sbjct: 733 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEF 792

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELL FL+DGLHEDLN+  ++
Sbjct: 793 GIIMKALWTGQYRYISPKDFKVTIGKINDQFAGSSQQDSQELLLFLMDGLHEDLNKADNR 852

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
              K ++ +   D + A+  W  H   N+SIIV + QGQ+KST+ C  C + S TF+ FM
Sbjct: 853 KRHKEENNEHLDDLQAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCRRRSRTFEAFM 912

Query: 402 YLSLPLQATTTRTM 415
           YLSLPL +T+  T+
Sbjct: 913 YLSLPLASTSKCTL 926


>gi|357588457|ref|NP_001239509.1| ubiquitin carboxyl-terminal hydrolase 8 isoform 1 [Mus musculus]
          Length = 1091

 Score =  139 bits (351), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 67/151 (44%), Positives = 101/151 (66%), Gaps = 1/151 (0%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A T   +L  CL  F +EE L   + +YC  C+ RR + KK+++W+LP VL++HLKRFSY
Sbjct: 930  ASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSY 989

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
                K KL+T V+FP+ + +L++YV    +S ++ Y L++++NHYGG+  GHYTA+ K  
Sbjct: 990  DGRWKQKLQTSVDFPLENLDLSQYVIGPKNSLKK-YNLFSVSNHYGGLDGGHYTAYCKNA 1048

Query: 795  DENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
               RW+ FDD  +S I+   V+S+AAY+LFY
Sbjct: 1049 ARQRWFKFDDHEVSDISVSSVRSSAAYILFY 1079



 Score =  122 bits (306), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 72/194 (37%), Positives = 96/194 (49%), Gaps = 48/194 (24%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------- 321
           G+   LTGL NLGNTC+MNS +QCL + P  A YF R  Y+ +IN  N LG         
Sbjct: 744 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEF 803

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELL FL+DGLHEDLN+  ++
Sbjct: 804 GIIMKALWTGQYRYISPKDFKVTIGKINDQFAGSSQQDSQELLLFLMDGLHEDLNKADNR 863

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
              K ++ +   D + A+  W  H   N+SIIV + QGQ+KST+ C  C + S TF+ FM
Sbjct: 864 KRHKEENNEHLDDLQAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCRRRSRTFEAFM 923

Query: 402 YLSLPLQATTTRTM 415
           YLSLPL +T+  T+
Sbjct: 924 YLSLPLASTSKCTL 937


>gi|148696217|gb|EDL28164.1| ubiquitin specific peptidase 8, isoform CRA_b [Mus musculus]
          Length = 1119

 Score =  139 bits (351), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 67/151 (44%), Positives = 101/151 (66%), Gaps = 1/151 (0%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A T   +L  CL  F +EE L   + +YC  C+ RR + KK+++W+LP VL++HLKRFSY
Sbjct: 958  ASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSY 1017

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
                K KL+T V+FP+ + +L++YV    +S ++ Y L++++NHYGG+  GHYTA+ K  
Sbjct: 1018 DGRWKQKLQTSVDFPLENLDLSQYVIGPKNSLKK-YNLFSVSNHYGGLDGGHYTAYCKNA 1076

Query: 795  DENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
               RW+ FDD  +S I+   V+S+AAY+LFY
Sbjct: 1077 ARQRWFKFDDHEVSDISVSSVRSSAAYILFY 1107



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 72/194 (37%), Positives = 96/194 (49%), Gaps = 48/194 (24%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------- 321
           G+   LTGL NLGNTC+MNS +QCL + P  A YF R  Y+ +IN  N LG         
Sbjct: 772 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEF 831

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELL FL+DGLHEDLN+  ++
Sbjct: 832 GIIMKALWTGQYRYISPKDFKVTIGKINDQFAGSSQQDSQELLLFLMDGLHEDLNKADNR 891

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
              K ++ +   D + A+  W  H   N+SIIV + QGQ+KST+ C  C + S TF+ FM
Sbjct: 892 KRHKEENNEHLDDLQAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCRRRSRTFEAFM 951

Query: 402 YLSLPLQATTTRTM 415
           YLSLPL +T+  T+
Sbjct: 952 YLSLPLASTSKCTL 965


>gi|5058999|gb|AAD38869.1|AF057146_1 putative deubiquitinating enzyme UBPY [Mus musculus]
          Length = 1080

 Score =  139 bits (351), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 67/151 (44%), Positives = 101/151 (66%), Gaps = 1/151 (0%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A T   +L  CL  F +EE L   + +YC  C+ RR + KK+++W+LP VL++HLKRFSY
Sbjct: 919  ASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSY 978

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
                K KL+T V+FP+ + +L++YV    +S ++ Y L++++NHYGG+  GHYTA+ K  
Sbjct: 979  DGRWKQKLQTSVDFPLENLDLSQYVIGPKNSLKK-YNLFSVSNHYGGLDGGHYTAYCKNA 1037

Query: 795  DENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
               RW+ FDD  +S I+   V+S+AAY+LFY
Sbjct: 1038 ARQRWFKFDDHEVSDISVSSVRSSAAYILFY 1068



 Score =  122 bits (306), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 72/194 (37%), Positives = 96/194 (49%), Gaps = 48/194 (24%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------- 321
           G+   LTGL NLGNTC+MNS +QCL + P  A YF R  Y+ +IN  N LG         
Sbjct: 733 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEF 792

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELL FL+DGLHEDLN+  ++
Sbjct: 793 GIIMKALWTGQYRYISPKDFKVTIGKINDQFAGSSQQDSQELLLFLMDGLHEDLNKADNR 852

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
              K ++ +   D + A+  W  H   N+SIIV + QGQ+KST+ C  C + S TF+ FM
Sbjct: 853 KRHKEENNEHLDDLQAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCRRRSRTFEAFM 912

Query: 402 YLSLPLQATTTRTM 415
           YLSLPL +T+  T+
Sbjct: 913 YLSLPLASTSKCTL 926


>gi|395326677|gb|EJF59084.1| cysteine proteinase [Dichomitus squalens LYAD-421 SS1]
          Length = 1201

 Score =  139 bits (351), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 70/170 (41%), Positives = 97/170 (57%), Gaps = 19/170 (11%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
             R   ++L  C++AF++EE +   D W CP CK  R+A+K+L L RLP VL+IHLKRFS 
Sbjct: 1031 GRASKVTLQHCIDAFVKEEVMEKSDAWNCPHCKALRKATKQLSLSRLPPVLLIHLKRFSA 1090

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVA-------------NKNSSRRQL----YELYALTN 777
                  K+ETFV FP+   +LT Y+              + +  R QL    Y+LYA+TN
Sbjct: 1091 KGPFTDKIETFVEFPLKGLDLTNYMPPPLPPGAIGVPPLSPDDPRCQLPPYRYDLYAVTN 1150

Query: 778  HYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            H+G + +GHYTA I       W   DDS ++P +  DV    AY+LFY+R
Sbjct: 1151 HFGTLSTGHYTAFIA--SRGGWLYCDDSRVTPADAKDVVGKPAYILFYKR 1198



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/200 (34%), Positives = 99/200 (49%), Gaps = 55/200 (27%)

Query: 273  VGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPLGMV---------- 321
            +G +GL NLGNTC+MNS IQCL  T  F+R+F +  ++  +N  NP+G            
Sbjct: 841  IGTSGLKNLGNTCYMNSTIQCLSATVPFSRFFTDGRWKSAVNMVNPMGTKGVLALAFANI 900

Query: 322  -------------------------------------ELLAFLLDGLHEDLNRVKHKPYI 344
                                                 E L+FLLDGLHEDLNR+  K  I
Sbjct: 901  LRDMWQGEGGTLSPVTFRRSICSHAPQFSGSEQHDSQEFLSFLLDGLHEDLNRILQKRNI 960

Query: 345  KS-----KDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDP 399
            +S      + +  P +  +++ W  +  R+DS+IVD  QGQY++ + C  C+K S T++ 
Sbjct: 961  ESTPEREAELEKLPTQIASEQEWQIYRMRDDSLIVDFFQGQYRNRMECLTCHKTSTTYNT 1020

Query: 400  FMYLSLPLQATTTRTMTVTV 419
            FMYL+LP+   T R   VT+
Sbjct: 1021 FMYLTLPIP--TGRASKVTL 1038


>gi|20071587|gb|AAH27052.1| Usp8 protein, partial [Mus musculus]
          Length = 673

 Score =  139 bits (351), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 67/151 (44%), Positives = 101/151 (66%), Gaps = 1/151 (0%)

Query: 675 ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
           A T   +L  CL  F +EE L   + +YC  C+ RR + KK+++W+LP VL++HLKRFSY
Sbjct: 512 ASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSY 571

Query: 735 SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
               K KL+T V+FP+ + +L++YV    +S ++ Y L++++NHYGG+  GHYTA+ K  
Sbjct: 572 DGRWKQKLQTSVDFPLENLDLSQYVIGPKNSLKK-YNLFSVSNHYGGLDGGHYTAYCKNA 630

Query: 795 DENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
              RW+ FDD  +S I+   V+S+AAY+LFY
Sbjct: 631 ARQRWFKFDDHEVSDISVSSVRSSAAYILFY 661



 Score =  122 bits (306), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 72/194 (37%), Positives = 96/194 (49%), Gaps = 48/194 (24%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------- 321
           G+   LTGL NLGNTC+MNS +QCL + P  A YF R  Y+ +IN  N LG         
Sbjct: 326 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEF 385

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELL FL+DGLHEDLN+  ++
Sbjct: 386 GIIMKALWTGQYRYISPKDFKVTIGKINDQFAGSSQQDSQELLLFLMDGLHEDLNKADNR 445

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
              K ++ +   D + A+  W  H   N+SIIV + QGQ+KST+ C  C + S TF+ FM
Sbjct: 446 KRHKEENNEHLDDLQAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCRRRSRTFEAFM 505

Query: 402 YLSLPLQATTTRTM 415
           YLSLPL +T+  T+
Sbjct: 506 YLSLPLASTSKCTL 519


>gi|145533913|ref|XP_001452701.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124420400|emb|CAK85304.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1035

 Score =  139 bits (351), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 126/497 (25%), Positives = 208/497 (41%), Gaps = 109/497 (21%)

Query: 1   WWQHWIDYVNQ---DQPNNTGDGSSLLEHFNSAGSSAS--------KRPSGIDNSDLVND 49
           W+  W  YV     + PN   +    +E   +  + +S          P  I+   L+  
Sbjct: 168 WFNKWKSYVTDTPIELPNENLNMEKEVEALENLFNVSSDLDIEEQINAPGPINGFSLIQA 227

Query: 50  ATA-EDPGAGPE------IVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLS 102
            +A E    GP+      + + + EG D+IL+  +++    + YGG     ++VI     
Sbjct: 228 QSALELDPFGPKSYTNYILKENIREGADFILVGHKIFEYFKNIYGGFEI--KRVIVEHSQ 285

Query: 103 QTELAVEVYPLRLQLLVMPRGECSTIRI---SKKETIGELHRRACSIFYLNLEQICIWDY 159
             +  V++ P  +Q +++P  E    R+   +  + + +L ++   +  LN E +  W +
Sbjct: 286 THQKYVDLVPRMIQFIILPNEEKHRSRLITANSSDLVLDLCKKVSRVLKLNNE-VRWWKF 344

Query: 160 YGHRKHALMNDMDRTLDDANI--QMDQDILVE--VLDNVNGTNCKSSIQDNGFAEKKASS 215
              +      D  + L    +  Q+   +L +  ++D +N T+    I +  +      S
Sbjct: 345 NDFQSQE---DFIKKLQKRELYKQVSAKVLEKTMMIDEINFTSSDLFICEVRYGRDWQIS 401

Query: 216 VLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGL 275
              E  K  LS           S      +S  P + +                 +  G+
Sbjct: 402 ---EIDKKKLS-----------SFKRKMNVSDVPKIMN----------------DSRKGV 431

Query: 276 TGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------------- 321
           TGL NLGNTCFMN+A+QCL +T E   Y    ++ + +N  NPLG               
Sbjct: 432 TGLQNLGNTCFMNAALQCLSNTYELTEYMVSNEFYQHLNCDNPLGTKGVLATAYAELMKI 491

Query: 322 ----------------------------------ELLAFLLDGLHEDLNRVKHKPYIKSK 347
                                             E L++LLDGLHEDLNRV +KP++   
Sbjct: 492 MWYGNNSAVSAYDLKRVIGKFAPQFYGYGQQDSHEFLSYLLDGLHEDLNRVLNKPFVSEV 551

Query: 348 DADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPL 407
           +     D E +  +W N+I RN S I  +  GQYKSTLVCP C++VS TFDP+M LSLP+
Sbjct: 552 EITDETDFEASRIFWNNYILRNQSKIQQLMVGQYKSTLVCPYCHRVSKTFDPYMSLSLPI 611

Query: 408 QATTTRTMTVTVFTSDG 424
            + T   +++     +G
Sbjct: 612 PSYTLIQLSLYFIYQNG 628



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 100/171 (58%), Gaps = 17/171 (9%)

Query: 672  TKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKR 731
             ++ R    +L  CL +F +EE L   + WYC +CK+  QA+K+++++R P++L++HLKR
Sbjct: 857  NRQLRKGEYTLEDCLRSFAKEEILGKGNEWYCNKCKQHVQATKQMEIYRAPQLLIVHLKR 916

Query: 732  FS------------YSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQL---YELYALT 776
            F             +      K+ T V+FP  + NL  +V +K +   ++   YELY + 
Sbjct: 917  FRSGNNRISNYGGFFYSGGSQKITTMVHFP-KNLNLNPFVLSKVNDNDRIDYNYELYGVD 975

Query: 777  NHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            NH+GG+G GHYTA       N+W +++DS  + +   +V+S AAYVLFYRR
Sbjct: 976  NHFGGLGGGHYTACAYNSLINKWVDYNDSS-ARLTSANVESEAAYVLFYRR 1025


>gi|351715023|gb|EHB17942.1| Ubiquitin carboxyl-terminal hydrolase 8 [Heterocephalus glaber]
          Length = 1106

 Score =  139 bits (350), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 68/151 (45%), Positives = 100/151 (66%), Gaps = 1/151 (0%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A T   +L  CL  F +EE L   + +YC  C+ RR + KK+++W+LP VL++HLKRFSY
Sbjct: 945  ASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSY 1004

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
                K KL+T V+FP+ + +L++YV     S ++ Y L++++NHYGG+  GHYTA+ K  
Sbjct: 1005 DGRWKQKLQTSVDFPLENLDLSQYVIGPKHSLKK-YSLFSVSNHYGGLDGGHYTAYCKNA 1063

Query: 795  DENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
               RW+ FDD  +S I+   VKS+AAY+LFY
Sbjct: 1064 ARQRWFKFDDHEVSDISVSSVKSSAAYILFY 1094



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/194 (37%), Positives = 97/194 (50%), Gaps = 48/194 (24%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------- 321
           G+   LTGL NLGNTC+MNS +QCL + P  A YF R  Y+ +IN  N LG         
Sbjct: 759 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNYYQDDINRSNLLGHKGEVAEEF 818

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELL FL+DGLHEDLN+  ++
Sbjct: 819 GIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNR 878

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
              K ++ D   D + A+  W  H   N+SIIV + QGQ+KST+ C  C++ S TF+ FM
Sbjct: 879 KRHKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHRKSRTFEAFM 938

Query: 402 YLSLPLQATTTRTM 415
           YLSLPL +T+  T+
Sbjct: 939 YLSLPLASTSKCTL 952


>gi|301604786|ref|XP_002932037.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 31-like [Xenopus
           (Silurana) tropicalis]
          Length = 1220

 Score =  139 bits (350), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 73/217 (33%), Positives = 114/217 (52%), Gaps = 23/217 (10%)

Query: 634 PSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEP--LSLYTCLEAFLR 691
           P  +  + + V+W ++  E       E  +   ++  + ++   +P   +L  C   + +
Sbjct: 474 PGGAAHVKLVVEWDRETKEYLFGSTEEEYVPDAESVRLQREIHHQPQCCTLAQCFHLYTK 533

Query: 692 EEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIH 751
           EE L P + W CP CK+ +Q S KL LW LP+VL++HLKRF      + KL+  V FP+ 
Sbjct: 534 EEQLAPGNAWRCPHCKQLQQGSIKLSLWTLPDVLILHLKRFRQDGDRRLKLQNMVRFPLT 593

Query: 752 DFNLTKYVANKNSS-----------RRQ----------LYELYALTNHYGGMGSGHYTAH 790
             ++T +V  ++ S           RR           +Y+LYA+ NH+G M  GHYTA+
Sbjct: 594 GLDMTPHVVKRSQSSWSLPSHWSPWRRPYSLGRDPEDFIYDLYAVCNHHGTMQGGHYTAY 653

Query: 791 IKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            K   +  WY FDDS + P+ EDDV +  AY+LFY+R
Sbjct: 654 CKNSVDGLWYCFDDSDVQPLPEDDVCAPTAYILFYQR 690



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 114/279 (40%), Gaps = 68/279 (24%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLV-------------------------------------- 295
           GL+GL N GNTCFMN+ +QCL                                       
Sbjct: 67  GLSGLKNHGNTCFMNAVLQCLSNTDLFAEFLGLEQYKEAPESPLASPGGTHDRGEVTEQL 126

Query: 296 -----------HTPEFARYFREDYRR---EINWQNPLGMVELLAFLLDGLHEDLNRV-KH 340
                      +TP+ +R F+    R   +    +     E L +LLD +HEDLN V KH
Sbjct: 127 AKLLRSLWTLEYTPQHSREFKAIVSRNALQYRGTSQHDAQEFLLWLLDRVHEDLNVVVKH 186

Query: 341 KPYIKSKDADGRP--DEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFD 398
           KP         RP  +E++  E        + + + ++ Q QY+S+L CP C K S TFD
Sbjct: 187 KP---------RPPLEEDLTGE--GPTFPSSGTFVQELFQAQYRSSLTCPHCQKQSNTFD 235

Query: 399 PFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSE 458
           PF+ +SLP+    TR + VTV      +      V +P  G    L + +     +   +
Sbjct: 236 PFLCISLPIPLPHTRPLYVTVVYQGKCSHCMRIGVGIPLSGNVGRLREAISQETKIP-FD 294

Query: 459 ELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPK 497
           ++ + E+      R   D    L TI + D L A+  P+
Sbjct: 295 QIVITEMYFDGFHRSFFD-TDDLDTIHESDCLFAFETPE 332


>gi|119576240|gb|EAW55836.1| ubiquitin specific peptidase 31, isoform CRA_b [Homo sapiens]
          Length = 909

 Score =  139 bits (350), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 96/168 (57%), Gaps = 21/168 (12%)

Query: 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKH 740
           +L  C + + +EE L P+D W CP CK+ +Q S  L LW LP+VL+IHLKRF      + 
Sbjct: 154 TLSQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRFRQEGDRRM 213

Query: 741 KLETFVNFPIHDFNLTKYVANKNSS-----------RRQ----------LYELYALTNHY 779
           KL+  V FP+   ++T +V  ++ S           RR           +Y+LYA+ NH+
Sbjct: 214 KLQNMVKFPLTGLDMTPHVVKRSQSSWSLPSHWSPWRRPYGLGRDPEDYIYDLYAVCNHH 273

Query: 780 GGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           G M  GHYTA+ K   +  WY FDDS +  ++ED+V +  AY+LFY+R
Sbjct: 274 GTMQGGHYTAYCKNSVDGLWYCFDDSDVQQLSEDEVCTQTAYILFYQR 321


>gi|426383722|ref|XP_004058427.1| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal
           hydrolase 6 [Gorilla gorilla gorilla]
          Length = 1326

 Score =  139 bits (350), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 76/176 (43%), Positives = 108/176 (61%), Gaps = 6/176 (3%)

Query: 322 ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQY 381
           ELLAFLLD LHEDLNRV  KPY++ K++DGRPD EVA E W NH+ RN SI+VD+  GQ 
Sbjct: 578 ELLAFLLDALHEDLNRVHEKPYVELKESDGRPDWEVAAEAWDNHLRRNRSIVVDLFHGQL 637

Query: 382 KSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRC 441
           +S + C  C  +SV FDPF +LSLPL   +   + +TV   DG+  P  Y + +    + 
Sbjct: 638 RSQVKCKTCGHISVRFDPFNFLSLPLPMDSYMDLEITVIKLDGTT-PVRYGLRLNMDEKY 696

Query: 442 RDLIQVLGNICSLKQSEELKVAEIQNHSIQRF-LDDPLISLSTIKDDDHLAAYRVP 496
             L + L ++C L  SE++ +AE+ + +I+ F  D+  + LS       L A+ +P
Sbjct: 697 TGLKKQLRDLCGLN-SEQILLAEVHDSNIKNFPQDNQKVQLSV---SGFLCAFEIP 748



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 74/130 (56%), Gaps = 14/130 (10%)

Query: 648  QKLLEK----YNTHFLENLLEV-FKNGPV---------TKKARTEPLSLYTCLEAFLREE 693
            QK  +K     N +F++N+ +V F N  V         +++A+ EP++L +CL AF  EE
Sbjct: 926  QKFFKKSYGHINRNFIQNVTDVTFGNKRVVDKHESVEQSRRAQAEPINLDSCLRAFTTEE 985

Query: 694  PLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDF 753
             L   +M+YC +CK    A+KKLDLWRLP  L+IHLKRF +      K +  V FP   F
Sbjct: 986  ELGESEMYYCSKCKTHCLATKKLDLWRLPPFLIIHLKRFQFVNDQWIKSQKIVKFPRESF 1045

Query: 754  NLTKYVANKN 763
            + + ++  ++
Sbjct: 1046 DPSAFLVPRD 1055


>gi|355779959|gb|EHH64435.1| Ubiquitin carboxyl-terminal hydrolase 31, partial [Macaca
           fascicularis]
          Length = 946

 Score =  139 bits (350), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 96/168 (57%), Gaps = 21/168 (12%)

Query: 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKH 740
           +L  C + + +EE L P+D W CP CK+ +Q S  L LW LP+VL+IHLKRF      + 
Sbjct: 189 TLSQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRFRQEGDRRM 248

Query: 741 KLETFVNFPIHDFNLTKYVANKNSS-----------RRQ----------LYELYALTNHY 779
           KL+  V FP+   ++T +V  ++ S           RR           +Y+LYA+ NH+
Sbjct: 249 KLQNMVKFPLTGLDMTPHVVKRSQSSWSLPSHWSPWRRPYGLGRDPEDYIYDLYAVCNHH 308

Query: 780 GGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           G M  GHYTA+ K   +  WY FDDS +  ++ED+V +  AY+LFY+R
Sbjct: 309 GTMQGGHYTAYCKNSVDGLWYCFDDSDVQQLSEDEVCTQTAYILFYQR 356


>gi|118399164|ref|XP_001031908.1| Ubiquitin carboxyl-terminal hydrolase family protein [Tetrahymena
           thermophila]
 gi|89286243|gb|EAR84245.1| Ubiquitin carboxyl-terminal hydrolase family protein [Tetrahymena
           thermophila SB210]
          Length = 680

 Score =  139 bits (350), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 58/153 (37%), Positives = 103/153 (67%), Gaps = 3/153 (1%)

Query: 677 TEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSR 736
           +E  SL  C++ F +EE L   ++W+CP+CK+ ++++KK+DLW++P +L+IHLKRF +++
Sbjct: 302 SESFSLQRCIQEFTKEEKLERGELWFCPKCKKHQESTKKIDLWKMPNILIIHLKRFEFNK 361

Query: 737 SMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDE 796
             + KL   ++FPI +F+++   A K      +Y+L+A++NH G + SGHYT++ K   +
Sbjct: 362 DRRCKLSNKIDFPIKNFDISSLTAGKQRD-IPIYDLFAVSNHGGTLSSGHYTSYAKNRID 420

Query: 797 NRWYNFDDSHISPIN--EDDVKSAAAYVLFYRR 827
             WY F+D+ +  +   ED + S+ +YVLFY +
Sbjct: 421 QNWYFFNDTQVQYVEDPEDKLSSSQSYVLFYSK 453



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/227 (37%), Positives = 103/227 (45%), Gaps = 71/227 (31%)

Query: 249 PNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED- 307
           PN    +D   T    G+       GL GL NLGNTCFMNSA+QCL + P    YF    
Sbjct: 60  PNKIHKQD---TRFQQGIIEVDEISGLVGLSNLGNTCFMNSALQCLSNVPPLCDYFLSKL 116

Query: 308 YRREINWQNPLG------------MV---------------------------------- 321
           + +EIN+ + LG            M+                                  
Sbjct: 117 HEKEINYDSFLGSQGKITQQFAELMIDMWNTSDSYIIPQKFLRAIGNFGPQFADGSQQDS 176

Query: 322 -ELLAFLLDGLHE--------------------DLNRVKHKPYIKSKDADGRPDEEVADE 360
            E LAFL+D LHE                    DLNRVK KPYI+ KD +G   E+ A E
Sbjct: 177 HEFLAFLMDILHEVSQLTNQLQQNKQNFFEIYKDLNRVKQKPYIEGKDYNGNDYEKYAKE 236

Query: 361 YWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPL 407
            W  ++ RN SIIVD+ QGQ KSTL C  CN VS  F+ FMYLS+P+
Sbjct: 237 CWKEYLMRNRSIIVDLFQGQTKSTLRCLKCNTVSHKFETFMYLSVPI 283


>gi|123446292|ref|XP_001311898.1| Clan CA, family C19, ubiquitin hydrolase-like cysteine peptidase
           [Trichomonas vaginalis G3]
 gi|121893725|gb|EAX98968.1| Clan CA, family C19, ubiquitin hydrolase-like cysteine peptidase
           [Trichomonas vaginalis G3]
          Length = 1201

 Score =  139 bits (350), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 84/258 (32%), Positives = 118/258 (45%), Gaps = 57/258 (22%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHT-PEFARYFREDYRREINWQNPLGMV----------- 321
           G  G  NLGNTCF NS IQCL+H+ P       E ++++IN  NPLG             
Sbjct: 443 GKVGFQNLGNTCFFNSGIQCLMHSKPLVKMLLGESWKQDINEINPLGTKGRLVRAFQKLL 502

Query: 322 ------------------------------------ELLAFLLDGLHEDLNRVKHKPYIK 345
                                               EL+ F+LDG+HEDLNR + KP I 
Sbjct: 503 EEVWSGNSRVLAPSELKQVIGEFSSRFAGWGQQDSHELITFMLDGIHEDLNRCRVKPQID 562

Query: 346 SKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL 405
           +   DG  D E AD  W NH+ RNDSII D+   Q +S  +CP C K  V FDP+ +LSL
Sbjct: 563 TVIGDGINDAETADLAWTNHMKRNDSIIHDIFYAQLRSRCICPKCGKTIVVFDPYSHLSL 622

Query: 406 PLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGN---------ICSLKQ 456
           P+     + + VT    + S    T ++ VP   + +D    +           ICSL  
Sbjct: 623 PISNPKIKQVKVTFVPYNFSEKYETLSLNVPIIPKQKDYEDAISKAISRDVKVVICSLST 682

Query: 457 SEELKVAEIQNHSIQRFL 474
           ++ LK+  I+ +S+  ++
Sbjct: 683 AKSLKLGIIEGYSVCNYI 700



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 64/152 (42%), Positives = 93/152 (61%), Gaps = 6/152 (3%)

Query: 680  LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 739
            ++L  C E F  EE L  ++ W CP C++   A+KK+DLW +P+ LVIHLKRFS      
Sbjct: 885  VTLDKCFEYFCTEEVLDEDNEWRCPNCEQFVCATKKMDLWSVPKCLVIHLKRFSAGEYYS 944

Query: 740  HKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAH--IKLLDEN 797
            HK E +V++P    ++ KY+   +    + Y+LYA++ H G +G GHYTAH  +  LD+N
Sbjct: 945  HKDERYVDYP-DVIDIGKYIVGPHPGCTK-YQLYAVSEHMGSLGGGHYTAHAVVSPLDKN 1002

Query: 798  --RWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
               WY+F+DS  S        +A+AYVLFY+R
Sbjct: 1003 TGEWYSFNDSSASESTAASAHNASAYVLFYQR 1034


>gi|348509398|ref|XP_003442236.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 31-like
           [Oreochromis niloticus]
          Length = 1384

 Score =  139 bits (350), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 70/211 (33%), Positives = 113/211 (53%), Gaps = 23/211 (10%)

Query: 640 IVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEP--LSLYTCLEAFLREEPLVP 697
           + + V+W ++  +    H  E  +   ++  + ++   +P   +L  C + + +EE L P
Sbjct: 613 VKIVVEWDKETKDYLFGHTEEEYIPDAESVYLHREQHHQPQACTLAQCFQLYTKEEQLAP 672

Query: 698 EDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTK 757
           +D W CP CK+ +Q   KL LW LP+VL++HLKRF      + K++  V FP+   ++  
Sbjct: 673 DDAWRCPHCKQLQQGRIKLSLWTLPDVLILHLKRFRQEGDRRVKMQNMVRFPLMGMDMAP 732

Query: 758 YVANKNSS-----------RRQ----------LYELYALTNHYGGMGSGHYTAHIKLLDE 796
           +V  ++ S           RR           LY+LYA+ NH+G M  GHYTA+ K   +
Sbjct: 733 HVVKRSQSSWSLPSHWSPWRRSYGLGRNPDDYLYDLYAVCNHHGNMHGGHYTAYCKNSID 792

Query: 797 NRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            +WY FDDS ++ I +DDV    AY+LFY+R
Sbjct: 793 GQWYCFDDSEVTAIADDDVCQQTAYILFYQR 823



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 123/314 (39%), Gaps = 88/314 (28%)

Query: 258 DNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRRE----- 311
           D  LG  G  +R    G++GL N GNTCFMN+ +QCL +T  FA Y   E Y+ E     
Sbjct: 166 DGDLG--GFLSRERVPGVSGLKNHGNTCFMNAILQCLSNTELFAEYLVLEHYKGEEEDEE 223

Query: 312 --------INWQNPLGMVEL---------------------------------------- 323
                   +  + PL   E+                                        
Sbjct: 224 QPKTNGVHLQKKGPLAKGEVTEQLSGLVRALWTFEYTPQHSRDFKNVVSKNATQFKGNAQ 283

Query: 324 ------LAFLLDGLHEDLNRV--KHKPYIKSK-DADGRPDEEVADEYWANHIARNDSIIV 374
                 L +LLD +HEDLN V    +P IK   + D +  E  +    A       S + 
Sbjct: 284 HDAQEFLLWLLDRVHEDLNTVNPNSRPAIKPPIEEDDQSIEGPSPPLSAG------SFVQ 337

Query: 375 DVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSD--------GSA 426
           ++ Q QY+S+L CP C K S TFDPF+ +SLP+    TR + VTV            G A
Sbjct: 338 ELFQAQYRSSLTCPHCQKQSNTFDPFLCISLPIPLPHTRPLYVTVVYQGKYSHCMRIGVA 397

Query: 427 LPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKD 486
           +P   TV      R RD +     I      ++  + E+      R   D    L  I++
Sbjct: 398 VPLNSTVY-----RLRDAVSRETKI----PMDQFVLTEMYYDGFHRSFCDDDDDLDIIQE 448

Query: 487 DDHLAAYRVPKLVK 500
            D + A+  P+  +
Sbjct: 449 SDSIFAFETPETFR 462


>gi|344256918|gb|EGW13022.1| Ubiquitin carboxyl-terminal hydrolase 31 [Cricetulus griseus]
          Length = 1019

 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 96/168 (57%), Gaps = 21/168 (12%)

Query: 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKH 740
           +L  C + + +EE L P+D W CP CK+ +Q S  L LW LP+VL+IHLKRF      + 
Sbjct: 263 TLSQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRFRQEGDRRM 322

Query: 741 KLETFVNFPIHDFNLTKYVANKNSS-----------RRQ----------LYELYALTNHY 779
           KL+  V FP+   ++T +V  ++ S           RR           +Y+LYA+ NH+
Sbjct: 323 KLQNMVKFPLTGLDMTPHVVKRSQSSWSLPSHWSPWRRPYGLGRDPEDYIYDLYAVCNHH 382

Query: 780 GGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           G M  GHYTA+ K   +  WY FDDS +  ++ED+V +  AY+LFY+R
Sbjct: 383 GTMQGGHYTAYCKNSVDGLWYCFDDSDVQQLSEDEVCTQTAYILFYQR 430


>gi|154303378|ref|XP_001552096.1| hypothetical protein BC1G_09260 [Botryotinia fuckeliana B05.10]
          Length = 535

 Score =  139 bits (349), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 68/153 (44%), Positives = 101/153 (66%), Gaps = 1/153 (0%)

Query: 676 RTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYS 735
           R + ++L  CL+ F +EE L   D WYCP+CKE R+ASKK ++WR P++L++HLKRFS S
Sbjct: 133 RKQGITLEDCLDEFGKEEILSEMDTWYCPRCKEHRRASKKFEIWRTPDILIMHLKRFSAS 192

Query: 736 RSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLD 795
              ++KL   V+FPI   +L+  V      + ++Y+L A+ +HYGGMG GHYTA  K   
Sbjct: 193 GFQRNKLVDHVDFPIEGLDLSSRVIESQDGKEEIYDLIAVDDHYGGMGGGHYTAFAKNFS 252

Query: 796 ENRWYNFDDSHISPI-NEDDVKSAAAYVLFYRR 827
           + +WY ++DS +S   N + + +  AY+LFYRR
Sbjct: 253 DQKWYEYNDSSVSETKNLNSMVTKNAYLLFYRR 285


>gi|441615298|ref|XP_004088287.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 [Nomascus
           leucogenys]
          Length = 1011

 Score =  139 bits (349), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 67/151 (44%), Positives = 101/151 (66%), Gaps = 1/151 (0%)

Query: 675 ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
           A T   +L  CL  F +EE L   + +YC  C+ RR + KK+++W+LP VL++HLKRFSY
Sbjct: 850 ASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSY 909

Query: 735 SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
               K KL+T V+FP+ + +L++YV    ++ ++ Y L++++NHYGG+  GHYTA+ K  
Sbjct: 910 DGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKK-YNLFSVSNHYGGLDGGHYTAYCKNA 968

Query: 795 DENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
              RW+ FDD  +S I+   VKS+AAY+LFY
Sbjct: 969 ARQRWFKFDDHEVSDISVSSVKSSAAYILFY 999



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/194 (38%), Positives = 97/194 (50%), Gaps = 48/194 (24%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------- 321
           G+   LTGL NLGNTC+MNS +QCL + P  A YF R  Y+ +IN  N LG         
Sbjct: 664 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEF 723

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELL FL+DGLHEDLN+  ++
Sbjct: 724 GIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNR 783

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
              K ++ D   D + A+  W  H   N+SIIV + QGQ+KST+ C  C+K S TF+ FM
Sbjct: 784 KRHKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFM 843

Query: 402 YLSLPLQATTTRTM 415
           YLSLPL +T+  T+
Sbjct: 844 YLSLPLASTSKCTL 857


>gi|194383128|dbj|BAG59120.1| unnamed protein product [Homo sapiens]
          Length = 1012

 Score =  139 bits (349), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 67/151 (44%), Positives = 101/151 (66%), Gaps = 1/151 (0%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A T   +L  CL  F +EE L   + +YC  C+ RR + KK+++W+LP VL++HLKRFSY
Sbjct: 851  ASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSY 910

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
                K KL+T V+FP+ + +L++YV    ++ ++ Y L++++NHYGG+  GHYTA+ K  
Sbjct: 911  DGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKK-YNLFSVSNHYGGLDGGHYTAYCKNA 969

Query: 795  DENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
               RW+ FDD  +S I+   VKS+AAY+LFY
Sbjct: 970  ARQRWFKFDDHEVSDISVSSVKSSAAYILFY 1000



 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 74/194 (38%), Positives = 97/194 (50%), Gaps = 48/194 (24%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------- 321
           G+   LTGL NLGNTC+MNS +QCL + P  A YF R  Y+ +IN  N LG         
Sbjct: 665 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEF 724

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELL FL+DGLHEDLN+  ++
Sbjct: 725 GIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNR 784

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
              K ++ D   D + A+  W  H   N+SIIV + QGQ+KST+ C  C+K S TF+ FM
Sbjct: 785 KRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFM 844

Query: 402 YLSLPLQATTTRTM 415
           YLSLPL +T+  T+
Sbjct: 845 YLSLPLASTSKCTL 858


>gi|403274278|ref|XP_003928908.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform 2 [Saimiri
            boliviensis boliviensis]
          Length = 1012

 Score =  139 bits (349), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 67/151 (44%), Positives = 101/151 (66%), Gaps = 1/151 (0%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A T   +L  CL  F +EE L   + +YC  C+ RR + KK+++W+LP VL++HLKRFSY
Sbjct: 851  ASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSY 910

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
                K KL+T V+FP+ + +L++YV    ++ ++ Y L++++NHYGG+  GHYTA+ K  
Sbjct: 911  DGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKK-YNLFSVSNHYGGLDGGHYTAYCKNA 969

Query: 795  DENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
               RW+ FDD  +S I+   VKS+AAY+LFY
Sbjct: 970  ARQRWFKFDDHEVSDISVSSVKSSAAYILFY 1000



 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 74/194 (38%), Positives = 97/194 (50%), Gaps = 48/194 (24%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------- 321
           G+   LTGL NLGNTC+MNS +QCL + P  A YF R  Y+ +IN  N LG         
Sbjct: 665 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEF 724

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELL FL+DGLHEDLN+  ++
Sbjct: 725 GIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNR 784

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
              K ++ D   D + A+  W  H   N+SIIV + QGQ+KST+ C  C+K S TF+ FM
Sbjct: 785 KRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFM 844

Query: 402 YLSLPLQATTTRTM 415
           YLSLPL +T+  T+
Sbjct: 845 YLSLPLASTSKCTL 858


>gi|449666470|ref|XP_002164031.2| PREDICTED: uncharacterized protein LOC100201504 [Hydra
           magnipapillata]
          Length = 995

 Score =  139 bits (349), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 62/145 (42%), Positives = 92/145 (63%), Gaps = 1/145 (0%)

Query: 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKH 740
           +L  C++ F + E +   D W C  CK  R+ASK +++W+LP VL+I LKRF +     +
Sbjct: 841 TLENCIQTFTKAEKIGGNDSWKCSNCKRYREASKTIEIWKLPPVLIIQLKRFHFDGRWHN 900

Query: 741 KLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWY 800
           K++T VNFP+ +FN++KY+    S   + Y LYA+ NHYG   SGHYTA+       +WY
Sbjct: 901 KIQTTVNFPMQNFNMSKYIVAPQSIHTK-YHLYAVINHYGSFESGHYTANCVNPYYEKWY 959

Query: 801 NFDDSHISPINEDDVKSAAAYVLFY 825
           NFDDS +  I+ + +K+  AY+LFY
Sbjct: 960 NFDDSIVKEIDVNSIKTNTAYLLFY 984



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/189 (38%), Positives = 94/189 (49%), Gaps = 48/189 (25%)

Query: 275 LTGLLNLGNTCFMNSAIQCLVHTPEFARYF----------------------RE------ 306
           LTGL NLGNTC+MNS IQCL  T    +YF                      RE      
Sbjct: 654 LTGLKNLGNTCYMNSVIQCLACTLPLGKYFTTGMYEKHLNLCNTNAHPGELARELAFLII 713

Query: 307 -----DYRR--EINWQNPLGMV-------------ELLAFLLDGLHEDLNRVKHKPYIKS 346
                +YR    I+++  LG               ELL F +DGLHED+N++  K  IK 
Sbjct: 714 VISAGEYRSVSPIDFKIALGKFAPDFSGFKQQDAHELLMFFMDGLHEDVNKIVKKEIIKV 773

Query: 347 KDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLP 406
           K+ D   DE  AD  W ++   NDS+IVD+ QGQ++ST+ C  CNK S TFD F  L LP
Sbjct: 774 KETDNLSDEIAADIAWKDYKLNNDSVIVDLFQGQFRSTVTCLSCNKRSKTFDAFNCLQLP 833

Query: 407 LQATTTRTM 415
           L +  + T+
Sbjct: 834 LPSNQSTTL 842


>gi|190684690|ref|NP_005145.3| ubiquitin carboxyl-terminal hydrolase 8 [Homo sapiens]
 gi|190684692|ref|NP_001122082.1| ubiquitin carboxyl-terminal hydrolase 8 [Homo sapiens]
 gi|190684694|ref|NP_001122083.1| ubiquitin carboxyl-terminal hydrolase 8 [Homo sapiens]
 gi|731046|sp|P40818.1|UBP8_HUMAN RecName: Full=Ubiquitin carboxyl-terminal hydrolase 8; AltName:
            Full=Deubiquitinating enzyme 8; AltName: Full=Ubiquitin
            isopeptidase Y; Short=hUBPy; AltName: Full=Ubiquitin
            thioesterase 8; AltName:
            Full=Ubiquitin-specific-processing protease 8
 gi|83405557|gb|AAI10591.1| Ubiquitin specific peptidase 8 [Homo sapiens]
 gi|119597805|gb|EAW77399.1| ubiquitin specific peptidase 8, isoform CRA_a [Homo sapiens]
 gi|119597806|gb|EAW77400.1| ubiquitin specific peptidase 8, isoform CRA_a [Homo sapiens]
 gi|119597807|gb|EAW77401.1| ubiquitin specific peptidase 8, isoform CRA_a [Homo sapiens]
 gi|168278493|dbj|BAG11126.1| ubiquitin carboxyl-terminal hydrolase 8 [synthetic construct]
          Length = 1118

 Score =  139 bits (349), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 67/151 (44%), Positives = 101/151 (66%), Gaps = 1/151 (0%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A T   +L  CL  F +EE L   + +YC  C+ RR + KK+++W+LP VL++HLKRFSY
Sbjct: 957  ASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSY 1016

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
                K KL+T V+FP+ + +L++YV    ++ ++ Y L++++NHYGG+  GHYTA+ K  
Sbjct: 1017 DGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKK-YNLFSVSNHYGGLDGGHYTAYCKNA 1075

Query: 795  DENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
               RW+ FDD  +S I+   VKS+AAY+LFY
Sbjct: 1076 ARQRWFKFDDHEVSDISVSSVKSSAAYILFY 1106



 Score =  126 bits (316), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 74/194 (38%), Positives = 97/194 (50%), Gaps = 48/194 (24%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------- 321
           G+   LTGL NLGNTC+MNS +QCL + P  A YF R  Y+ +IN  N LG         
Sbjct: 771 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEF 830

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELL FL+DGLHEDLN+  ++
Sbjct: 831 GIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNR 890

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
              K ++ D   D + A+  W  H   N+SIIV + QGQ+KST+ C  C+K S TF+ FM
Sbjct: 891 KRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFM 950

Query: 402 YLSLPLQATTTRTM 415
           YLSLPL +T+  T+
Sbjct: 951 YLSLPLASTSKCTL 964


>gi|332843788|ref|XP_001168540.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform 1 [Pan
            troglodytes]
          Length = 1012

 Score =  139 bits (349), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 67/151 (44%), Positives = 101/151 (66%), Gaps = 1/151 (0%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A T   +L  CL  F +EE L   + +YC  C+ RR + KK+++W+LP VL++HLKRFSY
Sbjct: 851  ASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSY 910

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
                K KL+T V+FP+ + +L++YV    ++ ++ Y L++++NHYGG+  GHYTA+ K  
Sbjct: 911  DGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKK-YNLFSVSNHYGGLDGGHYTAYCKNA 969

Query: 795  DENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
               RW+ FDD  +S I+   VKS+AAY+LFY
Sbjct: 970  ARQRWFKFDDHEVSDISVSSVKSSAAYILFY 1000



 Score =  126 bits (316), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 74/194 (38%), Positives = 97/194 (50%), Gaps = 48/194 (24%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------- 321
           G+   LTGL NLGNTC+MNS +QCL + P  A YF R  Y+ +IN  N LG         
Sbjct: 665 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEF 724

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELL FL+DGLHEDLN+  ++
Sbjct: 725 GIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNR 784

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
              K ++ D   D + A+  W  H   N+SIIV + QGQ+KST+ C  C+K S TF+ FM
Sbjct: 785 KRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFM 844

Query: 402 YLSLPLQATTTRTM 415
           YLSLPL +T+  T+
Sbjct: 845 YLSLPLASTSKCTL 858


>gi|296213995|ref|XP_002753526.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform 3
            [Callithrix jacchus]
          Length = 1012

 Score =  139 bits (349), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 67/151 (44%), Positives = 101/151 (66%), Gaps = 1/151 (0%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A T   +L  CL  F +EE L   + +YC  C+ RR + KK+++W+LP VL++HLKRFSY
Sbjct: 851  ASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSY 910

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
                K KL+T V+FP+ + +L++YV    ++ ++ Y L++++NHYGG+  GHYTA+ K  
Sbjct: 911  DGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKK-YNLFSVSNHYGGLDGGHYTAYCKNA 969

Query: 795  DENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
               RW+ FDD  +S I+   VKS+AAY+LFY
Sbjct: 970  ARQRWFKFDDHEVSDISVSSVKSSAAYILFY 1000



 Score =  125 bits (315), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 74/194 (38%), Positives = 97/194 (50%), Gaps = 48/194 (24%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------- 321
           G+   LTGL NLGNTC+MNS +QCL + P  A YF R  Y+ +IN  N LG         
Sbjct: 665 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEF 724

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELL FL+DGLHEDLN+  ++
Sbjct: 725 GIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNR 784

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
              K ++ D   D + A+  W  H   N+SIIV + QGQ+KST+ C  C+K S TF+ FM
Sbjct: 785 KRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFM 844

Query: 402 YLSLPLQATTTRTM 415
           YLSLPL +T+  T+
Sbjct: 845 YLSLPLASTSKCTL 858


>gi|332845543|ref|XP_003315066.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 31 [Pan
           troglodytes]
          Length = 1358

 Score =  139 bits (349), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 96/168 (57%), Gaps = 21/168 (12%)

Query: 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKH 740
           +L  C + + +EE L P+D W CP CK+ +Q S  L LW LP+VL+IHLKRF      + 
Sbjct: 603 TLSQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRFRQEGDRRM 662

Query: 741 KLETFVNFPIHDFNLTKYVANKNSS-----------RRQ----------LYELYALTNHY 779
           KL+  V FP+   ++T +V  ++ S           RR           +Y+LYA+ NH+
Sbjct: 663 KLQNMVKFPLTGLDMTPHVVKRSQSSWSLPSHWSPWRRPYGLGRDPEDYIYDLYAVCNHH 722

Query: 780 GGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           G M  GHYTA+ K   +  WY FDDS +  ++ED+V +  AY+LFY+R
Sbjct: 723 GTMQGGHYTAYCKNSVDGLWYCFDDSDVQQLSEDEVCTQTAYILFYQR 770



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 114/293 (38%), Gaps = 71/293 (24%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFR-EDYRR-----EINWQNPLG-------- 319
           G+ GL N GNTCFMN+ +QCL +T  FA Y     YR        + + P G        
Sbjct: 132 GVAGLRNHGNTCFMNATLQCLSNTELFAEYLALGQYRAGRPEPSPDPEQPAGRGAQGQGE 191

Query: 320 MVELLAFLL-------------------------------------------DGLHEDLN 336
           + E LA L+                                           D +HEDLN
Sbjct: 192 VTEQLAHLVRALWTLEYTPQHSRDFKTIVSKNALQYRGNSQHDAQEFLLWLLDRVHEDLN 251

Query: 337 R-VKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSV 395
             VK     +S     +P  E              + + ++ Q QY+S+L CP C K S 
Sbjct: 252 HSVK-----QSGQPPLKPPSETDMMPEGPSFPVCSTFVQELFQAQYRSSLTCPHCQKQSN 306

Query: 396 TFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHG---RCRDLIQVLGNIC 452
           TFDPF+ +SLP+    TR + VTV      +      V +P  G   R R+ + +   I 
Sbjct: 307 TFDPFLCISLPIPLPHTRPLYVTVVYQGKCSHCMRIGVAIPLSGTVARLREAVSMETKI- 365

Query: 453 SLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFL 505
               ++++ + E+      R   D    L T+ + D + A+  P++ +    L
Sbjct: 366 ---PTDQIVLTEMYYDGFHRSFCD-TDDLETVHESDCIFAFETPEIFRPEGIL 414


>gi|31873342|emb|CAD97662.1| hypothetical protein [Homo sapiens]
          Length = 1118

 Score =  139 bits (349), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 67/151 (44%), Positives = 101/151 (66%), Gaps = 1/151 (0%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A T   +L  CL  F +EE L   + +YC  C+ RR + KK+++W+LP VL++HLKRFSY
Sbjct: 957  ASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSY 1016

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
                K KL+T V+FP+ + +L++YV    ++ ++ Y L++++NHYGG+  GHYTA+ K  
Sbjct: 1017 DGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKK-YNLFSVSNHYGGLDGGHYTAYCKNA 1075

Query: 795  DENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
               RW+ FDD  +S I+   VKS+AAY+LFY
Sbjct: 1076 ARQRWFKFDDHEVSDISVSSVKSSAAYILFY 1106



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/194 (37%), Positives = 96/194 (49%), Gaps = 48/194 (24%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------- 321
           G+   LTGL NLGNTC+MNS +QCL + P  A YF R  Y+ +IN  N LG         
Sbjct: 771 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEF 830

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELL FL+DGLHEDLN+  ++
Sbjct: 831 GIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNR 890

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
              K ++ D   D + A+  W  H   N+SIIV + QGQ+KST+ C  C+K S  F+ FM
Sbjct: 891 KRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRAFEAFM 950

Query: 402 YLSLPLQATTTRTM 415
           YLSLPL +T+  T+
Sbjct: 951 YLSLPLASTSKCTL 964


>gi|332235543|ref|XP_003266963.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform 1
            [Nomascus leucogenys]
 gi|332235545|ref|XP_003266964.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform 2
            [Nomascus leucogenys]
 gi|332235547|ref|XP_003266965.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform 3
            [Nomascus leucogenys]
          Length = 1117

 Score =  139 bits (349), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 67/151 (44%), Positives = 101/151 (66%), Gaps = 1/151 (0%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A T   +L  CL  F +EE L   + +YC  C+ RR + KK+++W+LP VL++HLKRFSY
Sbjct: 956  ASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSY 1015

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
                K KL+T V+FP+ + +L++YV    ++ ++ Y L++++NHYGG+  GHYTA+ K  
Sbjct: 1016 DGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKK-YNLFSVSNHYGGLDGGHYTAYCKNA 1074

Query: 795  DENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
               RW+ FDD  +S I+   VKS+AAY+LFY
Sbjct: 1075 ARQRWFKFDDHEVSDISVSSVKSSAAYILFY 1105



 Score =  125 bits (314), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/194 (38%), Positives = 97/194 (50%), Gaps = 48/194 (24%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------- 321
           G+   LTGL NLGNTC+MNS +QCL + P  A YF R  Y+ +IN  N LG         
Sbjct: 770 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEF 829

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELL FL+DGLHEDLN+  ++
Sbjct: 830 GIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNR 889

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
              K ++ D   D + A+  W  H   N+SIIV + QGQ+KST+ C  C+K S TF+ FM
Sbjct: 890 KRHKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFM 949

Query: 402 YLSLPLQATTTRTM 415
           YLSLPL +T+  T+
Sbjct: 950 YLSLPLASTSKCTL 963


>gi|158258232|dbj|BAF85089.1| unnamed protein product [Homo sapiens]
          Length = 1118

 Score =  139 bits (349), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 67/151 (44%), Positives = 101/151 (66%), Gaps = 1/151 (0%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A T   +L  CL  F +EE L   + +YC  C+ RR + KK+++W+LP VL++HLKRFSY
Sbjct: 957  ASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSY 1016

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
                K KL+T V+FP+ + +L++YV    ++ ++ Y L++++NHYGG+  GHYTA+ K  
Sbjct: 1017 DGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKK-YNLFSVSNHYGGLDGGHYTAYCKNA 1075

Query: 795  DENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
               RW+ FDD  +S I+   VKS+AAY+LFY
Sbjct: 1076 ARQRWFKFDDHEVSDISVSSVKSSAAYILFY 1106



 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 74/194 (38%), Positives = 97/194 (50%), Gaps = 48/194 (24%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------- 321
           G+   LTGL NLGNTC+MNS +QCL + P  A YF R  Y+ +IN  N LG         
Sbjct: 771 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEF 830

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELL FL+DGLHEDLN+  ++
Sbjct: 831 GIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNR 890

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
              K ++ D   D + A+  W  H   N+SIIV + QGQ+KST+ C  C+K S TF+ FM
Sbjct: 891 KRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFM 950

Query: 402 YLSLPLQATTTRTM 415
           YLSLPL +T+  T+
Sbjct: 951 YLSLPLASTSKCTL 964


>gi|119576239|gb|EAW55835.1| ubiquitin specific peptidase 31, isoform CRA_a [Homo sapiens]
          Length = 1100

 Score =  139 bits (349), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 96/168 (57%), Gaps = 21/168 (12%)

Query: 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKH 740
           +L  C + + +EE L P+D W CP CK+ +Q S  L LW LP+VL+IHLKRF      + 
Sbjct: 345 TLSQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRFRQEGDRRM 404

Query: 741 KLETFVNFPIHDFNLTKYVANKNSS-----------RRQ----------LYELYALTNHY 779
           KL+  V FP+   ++T +V  ++ S           RR           +Y+LYA+ NH+
Sbjct: 405 KLQNMVKFPLTGLDMTPHVVKRSQSSWSLPSHWSPWRRPYGLGRDPEDYIYDLYAVCNHH 464

Query: 780 GGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           G M  GHYTA+ K   +  WY FDDS +  ++ED+V +  AY+LFY+R
Sbjct: 465 GTMQGGHYTAYCKNSVDGLWYCFDDSDVQQLSEDEVCTQTAYILFYQR 512


>gi|449303056|gb|EMC99064.1| hypothetical protein BAUCODRAFT_120356 [Baudoinia compniacensis
           UAMH 10762]
          Length = 1613

 Score =  139 bits (349), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 150/313 (47%), Gaps = 59/313 (18%)

Query: 240 NHSSEISTSPNLASARDSDNTLGSSGVTTR-GASVGLTGLLNLGNTCFMNSAIQCLVHTP 298
           ++SS   ++P    A      + + G   R G + G  GL NLGNTC+MNSA+QC+    
Sbjct: 478 SNSSRPGSAPASGRASPQPGGMITRGRARRDGRTRGTVGLSNLGNTCYMNSALQCIRSVE 537

Query: 299 EFARYFRED-YRREINWQNPLGM------------------------------------- 320
           E A YF  D Y+ EIN  NPLG                                      
Sbjct: 538 ELAIYFLADRYKAEINSNNPLGHGGVMAKKYAGVLNGIYGDNSSSTFSPSDFKRTLGSLQ 597

Query: 321 -----------VELLAFLLDGLHEDLNRVKHKPYIKSKDADGR----PDE--EVADEYWA 363
                       E L+FL+D LHEDLNR++ KPY ++ D+D +    P    E+ + Y  
Sbjct: 598 PLFSGYGQQDSQEFLSFLVDALHEDLNRIQKKPYTENPDSDDKTVRDPQAIIELGEVYRK 657

Query: 364 NHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSD 423
           NH ARNDS+ +D+  G YK+T+ CPVC KVS+TFDP+  +++ L   ++   TVT    +
Sbjct: 658 NHRARNDSVCMDLFSGFYKNTMECPVCEKVSITFDPYSLVTVQLPIESSFQHTVTFVPLN 717

Query: 424 GSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQR-FLDDPLISLS 482
           G   P  + +   ++   + L Q + +  S   ++ L +AE+    I + F +   ++  
Sbjct: 718 GP--PVNHAIDTDRNSTIKALKQSIASKHSGVSADRLWMAEVYGQRIYKVFENHQTLAEL 775

Query: 483 TIKDDDHLAAYRV 495
           +I+  D++ A+ +
Sbjct: 776 SIQGHDYIFAFEL 788



 Score =  136 bits (342), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 62/152 (40%), Positives = 101/152 (66%)

Query: 676  RTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYS 735
            R   ++L  C     + E L  ++ WYC +CKE RQA+K L++W +P++L++HLKRF  +
Sbjct: 1201 RKHGVTLEDCFVETGKREILSEDNAWYCNRCKEMRQAAKTLEIWTIPDILIVHLKRFGGN 1260

Query: 736  RSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLD 795
            RS + K++  V++PI   ++T+ +  K   +  +Y+L+A+ NHYGG+G GHYTA  K   
Sbjct: 1261 RSFRDKIDVMVDYPIDGLDMTEKIGLKEDGKEYIYDLFAVDNHYGGLGGGHYTALAKNFY 1320

Query: 796  ENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
            + +WY+++DS  S   +  ++SAAAY+LFYRR
Sbjct: 1321 DGQWYDYNDSICSKAGDAKLRSAAAYLLFYRR 1352


>gi|426379059|ref|XP_004056223.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 [Gorilla gorilla
            gorilla]
          Length = 1118

 Score =  139 bits (349), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 67/151 (44%), Positives = 101/151 (66%), Gaps = 1/151 (0%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A T   +L  CL  F +EE L   + +YC  C+ RR + KK+++W+LP VL++HLKRFSY
Sbjct: 957  ASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSY 1016

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
                K KL+T V+FP+ + +L++YV    ++ ++ Y L++++NHYGG+  GHYTA+ K  
Sbjct: 1017 DGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKK-YNLFSVSNHYGGLDGGHYTAYCKNA 1075

Query: 795  DENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
               RW+ FDD  +S I+   VKS+AAY+LFY
Sbjct: 1076 ARQRWFKFDDHEVSDISVSSVKSSAAYILFY 1106



 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 74/194 (38%), Positives = 97/194 (50%), Gaps = 48/194 (24%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------- 321
           G+   LTGL NLGNTC+MNS +QCL + P  A YF R  Y+ +IN  N LG         
Sbjct: 771 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEF 830

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELL FL+DGLHEDLN+  ++
Sbjct: 831 GIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNR 890

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
              K ++ D   D + A+  W  H   N+SIIV + QGQ+KST+ C  C+K S TF+ FM
Sbjct: 891 KRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFM 950

Query: 402 YLSLPLQATTTRTM 415
           YLSLPL +T+  T+
Sbjct: 951 YLSLPLASTSKCTL 964


>gi|395515216|ref|XP_003761802.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 31, partial
           [Sarcophilus harrisii]
          Length = 1139

 Score =  139 bits (349), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 95/168 (56%), Gaps = 21/168 (12%)

Query: 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKH 740
           +L  C + + +EE L P+D W CP CK+ +Q S  L LW LP+VL+IHLKRF      + 
Sbjct: 386 TLSQCFQLYTKEEQLAPDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRFRQEGDRRM 445

Query: 741 KLETFVNFPIHDFNLTKYVANKNSS-----------RRQ----------LYELYALTNHY 779
           KL+  V FP+   ++T +V  ++ S           RR           +Y+LYA+ NH+
Sbjct: 446 KLQNMVKFPLTGLDMTPHVVKRSQSSWSLPSHWSPWRRPYGLGRDPEDYIYDLYAVCNHH 505

Query: 780 GGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           G M  GHYTA+ K   +  WY FDDS +  ++ED+V    AY+LFY+R
Sbjct: 506 GTMQGGHYTAYCKNSVDGLWYCFDDSDVQQLSEDEVCKQTAYILFYQR 553



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 92/193 (47%), Gaps = 24/193 (12%)

Query: 322 ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRP------DEEVADEYWANHIARNDSIIVD 375
           E L +LLD +HEDLN      ++K     GRP      +++V  E  +  ++   + + +
Sbjct: 20  EFLLWLLDRVHEDLNN-----FVKQ---SGRPPLKPPLEDDVVPEGPSFPVS--STFVQE 69

Query: 376 VCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTV 435
           + Q QY+S+L CP C K S TFDPF+ +SLP+    TR + VTV      +      V V
Sbjct: 70  LFQAQYRSSLTCPHCQKQSNTFDPFLCISLPIPLPHTRPLYVTVVYQGKCSHCMRIGVAV 129

Query: 436 PKHG---RCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAA 492
           P  G   R R+ + V   I     ++++ + E+      R   D    L T+ + D + A
Sbjct: 130 PLSGTVARLREAVSVETKI----PTDQIVLTEMYYDGFHRSFCD-TDDLETVHESDCIFA 184

Query: 493 YRVPKLVKKAVFL 505
           +  P++ +    L
Sbjct: 185 FETPEIFRPEGIL 197


>gi|126334974|ref|XP_001377884.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 31 [Monodelphis
           domestica]
          Length = 1382

 Score =  139 bits (349), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 95/168 (56%), Gaps = 21/168 (12%)

Query: 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKH 740
           +L  C + + +EE L P+D W CP CK+ +Q S  L LW LP+VL+IHLKRF      + 
Sbjct: 629 TLSQCFQLYTKEEQLAPDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRFRQEGDRRM 688

Query: 741 KLETFVNFPIHDFNLTKYVANKNSS-----------RRQ----------LYELYALTNHY 779
           KL+  V FP+   ++T +V  ++ S           RR           +Y+LYA+ NH+
Sbjct: 689 KLQNMVKFPLTGLDMTPHVVKRSQSSWSLPSHWSPWRRPYGLGRDPEDYIYDLYAVCNHH 748

Query: 780 GGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           G M  GHYTA+ K   +  WY FDDS +  ++ED+V    AY+LFY+R
Sbjct: 749 GTMQGGHYTAYCKNSVDGLWYCFDDSDVQQLSEDEVCKQTAYILFYQR 796



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 106/228 (46%), Gaps = 27/228 (11%)

Query: 290 AIQCLVHTPEFARYFREDYRR---EINWQNPLGMVELLAFLLDGLHEDLNRVKHKPYIKS 346
           A+  L +TP+ +R F+    +   +    +     E L +LLD +HEDLN      ++K 
Sbjct: 228 ALWTLEYTPQHSRDFKSIVSKNALQYRGNSQHDAQEFLLWLLDRVHEDLNN-----FVKQ 282

Query: 347 KDADGRP------DEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPF 400
               GRP      +++V  E  +  ++   + + ++ Q QY+S+L CP C K S TFDPF
Sbjct: 283 ---SGRPPLKPPLEDDVVPEGPSFPVS--STFVQELFQAQYRSSLTCPHCQKQSNTFDPF 337

Query: 401 MYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHG---RCRDLIQVLGNICSLKQS 457
           + +SLP+    TR + VTV      +      V VP  G   R R+ + +   I     +
Sbjct: 338 LCISLPIPLPHTRPLYVTVVYQGKCSHCMRIGVAVPLSGTVARLREAVSMETKI----PT 393

Query: 458 EELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFL 505
           +++ + E+      R   D    L T+ + D + A+  P++ +    L
Sbjct: 394 DQIVLTEMYYDGFHRSFCD-TDDLETVHESDCIFAFETPEIFRPEGIL 440



 Score = 47.0 bits (110), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 21/37 (56%), Positives = 25/37 (67%), Gaps = 1/37 (2%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFR-EDYR 309
           G+ GL N GNTCFMN+ +QCL +T  FA Y   E YR
Sbjct: 146 GVAGLKNHGNTCFMNATLQCLSNTELFAEYLALEQYR 182


>gi|40788185|emb|CAE51935.2| ubiquitin-specific proteinase 31 [Homo sapiens]
          Length = 1352

 Score =  139 bits (349), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 96/168 (57%), Gaps = 21/168 (12%)

Query: 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKH 740
           +L  C + + +EE L P+D W CP CK+ +Q S  L LW LP+VL+IHLKRF      + 
Sbjct: 597 TLSQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRFRQEGDRRM 656

Query: 741 KLETFVNFPIHDFNLTKYVANKNSS-----------RRQ----------LYELYALTNHY 779
           KL+  V FP+   ++T +V  ++ S           RR           +Y+LYA+ NH+
Sbjct: 657 KLQNMVKFPLTGLDMTPHVVKRSQSSWSLPSHWSPWRRPYGLGRDPEDYIYDLYAVCNHH 716

Query: 780 GGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           G M  GHYTA+ K   +  WY FDDS +  ++ED+V +  AY+LFY+R
Sbjct: 717 GTMQGGHYTAYCKNSVDGLWYCFDDSDVQQLSEDEVCTQTAYILFYQR 764



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 114/293 (38%), Gaps = 71/293 (24%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFR-EDYRR-----EINWQNPLG-------- 319
           G+ GL N GNTCFMN+ +QCL +T  FA Y     YR        + + P G        
Sbjct: 126 GVAGLRNHGNTCFMNATLQCLSNTELFAEYLALGQYRAGRPEPSPDPEQPAGRGAQGQGE 185

Query: 320 MVELLAFLL-------------------------------------------DGLHEDLN 336
           + E LA L+                                           D +HEDLN
Sbjct: 186 VTEQLAHLVRALWTLEYTPQHSRDFKTIVSKNALQYRGNSQHDAQEFLLWLLDRVHEDLN 245

Query: 337 R-VKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSV 395
             VK     +S     +P  E              + + ++ Q QY+S+L CP C K S 
Sbjct: 246 HSVK-----QSGQPPLKPPSETDMMPEGPSFPVCSTFVQELFQAQYRSSLTCPHCQKQSN 300

Query: 396 TFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHG---RCRDLIQVLGNIC 452
           TFDPF+ +SLP+    TR + VTV      +      V VP  G   R R+ + +   I 
Sbjct: 301 TFDPFLCISLPIPLPHTRPLYVTVVYQGKCSHCMRIGVAVPLSGTVARLREAVSMETKI- 359

Query: 453 SLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFL 505
               ++++ + E+      R   D    L T+ + D + A+  P++ +    L
Sbjct: 360 ---PTDQIVLTEMYYDGFHRSFCD-TDDLETVHESDCIFAFETPEIFRPEGIL 408


>gi|40789062|dbj|BAA06225.2| KIAA0055 [Homo sapiens]
          Length = 1120

 Score =  139 bits (349), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 67/151 (44%), Positives = 101/151 (66%), Gaps = 1/151 (0%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A T   +L  CL  F +EE L   + +YC  C+ RR + KK+++W+LP VL++HLKRFSY
Sbjct: 959  ASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSY 1018

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
                K KL+T V+FP+ + +L++YV    ++ ++ Y L++++NHYGG+  GHYTA+ K  
Sbjct: 1019 DGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKK-YNLFSVSNHYGGLDGGHYTAYCKNA 1077

Query: 795  DENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
               RW+ FDD  +S I+   VKS+AAY+LFY
Sbjct: 1078 ARQRWFKFDDHEVSDISVSSVKSSAAYILFY 1108



 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 74/194 (38%), Positives = 97/194 (50%), Gaps = 48/194 (24%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------- 321
           G+   LTGL NLGNTC+MNS +QCL + P  A YF R  Y+ +IN  N LG         
Sbjct: 773 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEF 832

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELL FL+DGLHEDLN+  ++
Sbjct: 833 GIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNR 892

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
              K ++ D   D + A+  W  H   N+SIIV + QGQ+KST+ C  C+K S TF+ FM
Sbjct: 893 KRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFM 952

Query: 402 YLSLPLQATTTRTM 415
           YLSLPL +T+  T+
Sbjct: 953 YLSLPLASTSKCTL 966


>gi|327304122|ref|XP_003236753.1| ubiquitin C-terminal hydrolase [Trichophyton rubrum CBS 118892]
 gi|326462095|gb|EGD87548.1| ubiquitin C-terminal hydrolase [Trichophyton rubrum CBS 118892]
          Length = 1568

 Score =  139 bits (349), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 69/165 (41%), Positives = 106/165 (64%), Gaps = 2/165 (1%)

Query: 664  EVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPE 723
            EV     +  + +   ++L  CL+ F REE L   D WYCP+CKE R+ASKK +LW+ P+
Sbjct: 1164 EVTSKRQLRSRKKKRGITLDECLDEFGREEILSENDAWYCPRCKEHRRASKKFELWKAPD 1223

Query: 724  VLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMG 783
            +LV+HLKRFS +R  + K++  V+FP+ + +++  V         +Y+L A+ NHYGG+G
Sbjct: 1224 ILVMHLKRFSANRIFRDKIDAVVDFPL-ELDMSGRVQMVEEGESMVYDLIAVDNHYGGLG 1282

Query: 784  SGHYTAHIKLLDENRWYNFDDSHIS-PINEDDVKSAAAYVLFYRR 827
             GHYTA+ +   +  WY F+DSH++   +   V ++AAY+LFYRR
Sbjct: 1283 GGHYTAYARNFVDGLWYEFNDSHVTMKRDPSSVVTSAAYLLFYRR 1327



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 104/341 (30%), Positives = 154/341 (45%), Gaps = 73/341 (21%)

Query: 217 LVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRG------ 270
           L E +KSS ++  G     GT  N  + +    +  S R    T  +  + TRG      
Sbjct: 451 LSETTKSSTNLTVG----AGTKANVQNRLKNKSSSGSGR----TSPAPSIVTRGRRRKDG 502

Query: 271 ASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPL---GMV----- 321
            + G+TGL NLGNTC+MNSA+QC+    E + YF   +Y++++N  NPL   G V     
Sbjct: 503 KARGVTGLSNLGNTCYMNSALQCVRSVEELSHYFLMGEYKKDLNPNNPLSHNGDVAKAYA 562

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   E L FLLDGL EDLNR++ K
Sbjct: 563 NLLHQIFDVQGSASFAPRNFKVTIGRYGPSFSGYGQQDSQEFLLFLLDGLQEDLNRIQKK 622

Query: 342 PYIKSKDA------DGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSV 395
           PYI+  D+      D    +  AD  W  + ARNDS+I D+  G YKST+VCP C+KVS+
Sbjct: 623 PYIEKPDSTDEMVHDKVALQRFADRCWEIYKARNDSVITDLFSGMYKSTVVCPECDKVSI 682

Query: 396 TFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLK 455
            FDPF  L+L +    + +  +  F       P    V + K+   + + Q +    ++ 
Sbjct: 683 IFDPFNNLTLQIPIENSWSHKIMFFPL--HKPPVNIDVDIDKNSGIKAVKQFIAKKMNV- 739

Query: 456 QSEELKVAEIQNHSIQRFLD-DPLISLSTIKDDDHLAAYRV 495
            ++ L +AEI  H   +  D    I+   I + D +A Y +
Sbjct: 740 NADRLVMAEIYKHKFYKLFDHSQSIADHQISEGDTIAMYEL 780


>gi|291390761|ref|XP_002711890.1| PREDICTED: ubiquitin specific peptidase 31 [Oryctolagus cuniculus]
          Length = 1312

 Score =  139 bits (349), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 96/168 (57%), Gaps = 21/168 (12%)

Query: 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKH 740
           +L  C + + +EE L P+D W CP CK+ +Q S  L LW LP+VL+IHLKRF      + 
Sbjct: 557 TLSQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRFRQEGDRRM 616

Query: 741 KLETFVNFPIHDFNLTKYVANKNSS-----------RRQ----------LYELYALTNHY 779
           KL+  V FP+   ++T +V  ++ S           RR           +Y+LYA+ NH+
Sbjct: 617 KLQNMVKFPLTGLDMTPHVVKRSQSSWSLPSHWSPWRRPYGLGRDPEDYIYDLYAVCNHH 676

Query: 780 GGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           G M  GHYTA+ K   +  WY FDDS +  ++ED+V +  AY+LFY+R
Sbjct: 677 GTMQGGHYTAYCKNSVDGLWYCFDDSDVQQLSEDEVCTQTAYILFYQR 724



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 112/292 (38%), Gaps = 69/292 (23%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFR-EDYRR-----EINWQNPLG-------- 319
           G+ GL N GNTCFMN+ +QCL +T  FA Y     YR        + + P G        
Sbjct: 86  GVAGLRNHGNTCFMNATLQCLSNTELFAEYLALGQYRAGRPEPSPDPEQPAGRGAQGQGE 145

Query: 320 MVELLAFLL-------------------------------------------DGLHEDLN 336
           + E LA L+                                           D +HEDLN
Sbjct: 146 VTEQLAHLVRALWTLEYTPQHSRDFKSIVSKNALQYRGNSQHDAQEFLLWLLDRVHEDLN 205

Query: 337 RVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVT 396
                   +S     +P  E              + + ++ Q QY+S+L CP C K S T
Sbjct: 206 HA----VKQSGQPPVKPPSETDMMPEGPSFPVCSTFVQELFQAQYRSSLTCPHCQKQSNT 261

Query: 397 FDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHG---RCRDLIQVLGNICS 453
           FDPF+ +SLP+    TR + VTV      +      V VP  G   R R+ + +   I  
Sbjct: 262 FDPFLCISLPIPLPHTRPLYVTVVYQGKCSHCMRIGVAVPLSGTVARLREAVSMETKI-- 319

Query: 454 LKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFL 505
              ++++ + E+      R   D    L T+ + D + A+  P++ +    L
Sbjct: 320 --PTDQIVLTEMYYDGFHRSFCD-TDDLETVHESDCIFAFETPEIFRPEGIL 368


>gi|403274276|ref|XP_003928907.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform 1 [Saimiri
            boliviensis boliviensis]
          Length = 1118

 Score =  139 bits (349), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 67/151 (44%), Positives = 101/151 (66%), Gaps = 1/151 (0%)

Query: 675  ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSY 734
            A T   +L  CL  F +EE L   + +YC  C+ RR + KK+++W+LP VL++HLKRFSY
Sbjct: 957  ASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSY 1016

Query: 735  SRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL 794
                K KL+T V+FP+ + +L++YV    ++ ++ Y L++++NHYGG+  GHYTA+ K  
Sbjct: 1017 DGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKK-YNLFSVSNHYGGLDGGHYTAYCKNA 1075

Query: 795  DENRWYNFDDSHISPINEDDVKSAAAYVLFY 825
               RW+ FDD  +S I+   VKS+AAY+LFY
Sbjct: 1076 ARQRWFKFDDHEVSDISVSSVKSSAAYILFY 1106



 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 74/194 (38%), Positives = 97/194 (50%), Gaps = 48/194 (24%)

Query: 270 GASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYF-REDYRREINWQNPLGMV------- 321
           G+   LTGL NLGNTC+MNS +QCL + P  A YF R  Y+ +IN  N LG         
Sbjct: 771 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEF 830

Query: 322 ----------------------------------------ELLAFLLDGLHEDLNRVKHK 341
                                                   ELL FL+DGLHEDLN+  ++
Sbjct: 831 GIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNR 890

Query: 342 PYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFM 401
              K ++ D   D + A+  W  H   N+SIIV + QGQ+KST+ C  C+K S TF+ FM
Sbjct: 891 KRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFM 950

Query: 402 YLSLPLQATTTRTM 415
           YLSLPL +T+  T+
Sbjct: 951 YLSLPLASTSKCTL 964


>gi|120587027|ref|NP_065769.3| ubiquitin carboxyl-terminal hydrolase 31 [Homo sapiens]
 gi|134047944|sp|Q70CQ4.2|UBP31_HUMAN RecName: Full=Ubiquitin carboxyl-terminal hydrolase 31; AltName:
           Full=Deubiquitinating enzyme 31; AltName: Full=Ubiquitin
           thioesterase 31; AltName:
           Full=Ubiquitin-specific-processing protease 31
 gi|162318536|gb|AAI56335.1| Ubiquitin specific peptidase 31 [synthetic construct]
          Length = 1352

 Score =  139 bits (349), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 96/168 (57%), Gaps = 21/168 (12%)

Query: 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKH 740
           +L  C + + +EE L P+D W CP CK+ +Q S  L LW LP+VL+IHLKRF      + 
Sbjct: 597 TLSQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRFRQEGDRRM 656

Query: 741 KLETFVNFPIHDFNLTKYVANKNSS-----------RRQ----------LYELYALTNHY 779
           KL+  V FP+   ++T +V  ++ S           RR           +Y+LYA+ NH+
Sbjct: 657 KLQNMVKFPLTGLDMTPHVVKRSQSSWSLPSHWSPWRRPYGLGRDPEDYIYDLYAVCNHH 716

Query: 780 GGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           G M  GHYTA+ K   +  WY FDDS +  ++ED+V +  AY+LFY+R
Sbjct: 717 GTMQGGHYTAYCKNSVDGLWYCFDDSDVQQLSEDEVCTQTAYILFYQR 764



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 114/293 (38%), Gaps = 71/293 (24%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFR-EDYRR-----EINWQNPLG-------- 319
           G+ GL N GNTCFMN+ +QCL +T  FA Y     YR        + + P G        
Sbjct: 126 GVAGLRNHGNTCFMNATLQCLSNTELFAEYLALGQYRAGRPEPSPDPEQPAGRGAQGQGE 185

Query: 320 MVELLAFLL-------------------------------------------DGLHEDLN 336
           + E LA L+                                           D +HEDLN
Sbjct: 186 VTEQLAHLVRALWTLEYTPQHSRDFKTIVSKNALQYRGNSQHDAQEFLLWLLDRVHEDLN 245

Query: 337 R-VKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSV 395
             VK     +S     +P  E              + + ++ Q QY+S+L CP C K S 
Sbjct: 246 HSVK-----QSGQPPLKPPSETDMMPEGPSFPVCSTFVQELFQAQYRSSLTCPHCQKQSN 300

Query: 396 TFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHG---RCRDLIQVLGNIC 452
           TFDPF+ +SLP+    TR + VTV      +      V VP  G   R R+ + +   I 
Sbjct: 301 TFDPFLCISLPIPLPHTRPLYVTVVYQGKCSHCMRIGVAVPLSGTVARLREAVSMETKI- 359

Query: 453 SLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFL 505
               ++++ + E+      R   D    L T+ + D + A+  P++ +    L
Sbjct: 360 ---PTDQIVLTEMYYDGFHRSFCD-TDDLETVHESDCIFAFETPEIFRPEGIL 408


>gi|402907944|ref|XP_003916720.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 31 [Papio anubis]
          Length = 1336

 Score =  139 bits (349), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 96/168 (57%), Gaps = 21/168 (12%)

Query: 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKH 740
           +L  C + + +EE L P+D W CP CK+ +Q S  L LW LP+VL+IHLKRF      + 
Sbjct: 579 TLSQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRFRQEGDRRM 638

Query: 741 KLETFVNFPIHDFNLTKYVANKNSS-----------RRQ----------LYELYALTNHY 779
           KL+  V FP+   ++T +V  ++ S           RR           +Y+LYA+ NH+
Sbjct: 639 KLQNMVKFPLTGLDMTPHVVKRSQSSWSLPSHWSPWRRPYGLGRDPEDYIYDLYAVCNHH 698

Query: 780 GGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           G M  GHYTA+ K   +  WY FDDS +  ++ED+V +  AY+LFY+R
Sbjct: 699 GTMQGGHYTAYCKNSVDGLWYCFDDSDVQQLSEDEVCTQTAYILFYQR 746



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 115/293 (39%), Gaps = 72/293 (24%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFR-EDYRR-----EINWQNPLG-------- 319
           G+ GL N GNTCFMN+ +QCL +T  FA Y     YR        + + P G        
Sbjct: 109 GVAGLRNHGNTCFMNATLQCLSNTELFAEYLALGQYRAGRPEPSPDPEQPAGRGAQGQGE 168

Query: 320 MVELLAFLL-------------------------------------------DGLHEDLN 336
           + E LA L+                                           D +HEDLN
Sbjct: 169 VTEQLAHLVRALWTLEYTPQHSRDFKTIVSKNALQYRGNSQHDAQEFLLWLLDRVHEDLN 228

Query: 337 R-VKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSV 395
             VK     +S     +P  E  D           + + ++ Q QY+S+L CP C K S 
Sbjct: 229 HSVK-----QSGQPPLKPPSET-DMMPEGPFPVCSTFVQELFQAQYRSSLTCPHCQKQSN 282

Query: 396 TFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHG---RCRDLIQVLGNIC 452
           TFDPF+ +SLP+    TR + VTV      +      V VP  G   R R+ + +   I 
Sbjct: 283 TFDPFLCISLPIPLPHTRPLYVTVVYQGKCSHCMRIGVAVPLSGTVARLREAVSMETKI- 341

Query: 453 SLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFL 505
               ++++ + E+      R   D    L T+ + D + A+  P++ +    L
Sbjct: 342 ---PTDQIVLTEMYYDGFHRSFCD-TDDLETVHESDCIFAFETPEIFRPEGIL 390


>gi|297698321|ref|XP_002826274.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 31 [Pongo abelii]
          Length = 1330

 Score =  139 bits (349), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 96/168 (57%), Gaps = 21/168 (12%)

Query: 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKH 740
           +L  C + + +EE L P+D W CP CK+ +Q S  L LW LP+VL+IHLKRF      + 
Sbjct: 575 TLSQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRFRQEGDRRM 634

Query: 741 KLETFVNFPIHDFNLTKYVANKNSS-----------RRQ----------LYELYALTNHY 779
           KL+  V FP+   ++T +V  ++ S           RR           +Y+LYA+ NH+
Sbjct: 635 KLQNMVKFPLTGLDMTPHVVKRSQSSWSLPSHWSPWRRPYGLGRDPEDYIYDLYAVCNHH 694

Query: 780 GGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
           G M  GHYTA+ K   +  WY FDDS +  ++ED+V +  AY+LFY+R
Sbjct: 695 GTMQGGHYTAYCKNSVDGLWYCFDDSDVQQLSEDEVCTQTAYILFYQR 742



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 113/274 (41%), Gaps = 51/274 (18%)

Query: 274 GLTGLLNLGNTCFMNSAIQCLVHTPEFARYFR-EDYRR-----EINWQNPLG-------- 319
           G+ GL N GNTCFMN+ +QCL +T  FA Y     YR       ++ + P G        
Sbjct: 122 GVAGLRNHGNTCFMNATLQCLSNTELFAEYLALGQYRAGRPEPSLDPEQPTGGGAQGQGE 181

Query: 320 MVELLAFLLDGL---------HEDLNRVKHKPYIKSKDADGRPDEEVADEY--W------ 362
           + E LA L+  L           D   +  K  ++ +       +  A E+  W      
Sbjct: 182 VTEQLAHLVRALWTLEYTPQHSRDFKTIVSKNALQYRGN----SQHDAQEFLLWLLDRVH 237

Query: 363 --ANHIARNDS------IIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRT 414
              NH  +          + ++ Q   +S+L CP C K S TFDPF+ +SLP+    TR 
Sbjct: 238 EDLNHSVKQSGQPPLKPFVQELFQAPIRSSLACPHCQKQSNTFDPFLCISLPIPLPHTRP 297

Query: 415 MTVTVFTSDGSALPSTYTVTVPKHG---RCRDLIQVLGNICSLKQSEELKVAEIQNHSIQ 471
           + VTV      +      V VP  G   R R+ + V   I     ++++ + E+      
Sbjct: 298 LYVTVVYQGKCSHCMRIGVAVPLSGTVARLREAVSVETKI----PTDQIVLTEMYYDGFH 353

Query: 472 RFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFL 505
           R   D    L T+ + D + A+  P++ +    L
Sbjct: 354 RSFCD-TDDLETVHESDCIFAFETPEIFRPEGIL 386


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.316    0.132    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,222,777,542
Number of Sequences: 23463169
Number of extensions: 564089424
Number of successful extensions: 1599030
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5141
Number of HSP's successfully gapped in prelim test: 2701
Number of HSP's that attempted gapping in prelim test: 1569848
Number of HSP's gapped (non-prelim): 22728
length of query: 827
length of database: 8,064,228,071
effective HSP length: 151
effective length of query: 676
effective length of database: 8,816,256,848
effective search space: 5959789629248
effective search space used: 5959789629248
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 81 (35.8 bits)