Query 040385
Match_columns 827
No_of_seqs 327 out of 2233
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 07:54:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040385.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040385hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5560 UBP12 Ubiquitin C-term 100.0 4E-105 8E-110 867.9 35.9 682 36-827 67-821 (823)
2 KOG1870 Ubiquitin C-terminal h 100.0 4.6E-88 1E-92 812.9 37.1 766 1-827 21-840 (842)
3 KOG1865 Ubiquitin carboxyl-ter 100.0 8E-57 1.7E-61 492.4 18.1 142 681-827 267-409 (545)
4 COG5533 UBP5 Ubiquitin C-termi 100.0 1.5E-55 3.3E-60 445.6 17.6 285 273-827 69-413 (415)
5 cd02667 Peptidase_C19K A subfa 100.0 5.9E-53 1.3E-57 454.4 24.5 143 680-826 111-279 (279)
6 cd02663 Peptidase_C19G A subfa 100.0 5.9E-53 1.3E-57 459.2 22.1 142 681-826 148-300 (300)
7 cd02671 Peptidase_C19O A subfa 100.0 3.6E-52 7.7E-57 456.4 24.7 137 680-826 180-332 (332)
8 cd02664 Peptidase_C19H A subfa 100.0 6.8E-52 1.5E-56 455.8 21.8 144 682-826 136-327 (327)
9 cd02668 Peptidase_C19L A subfa 100.0 2.3E-51 4.9E-56 451.6 24.3 144 681-826 157-324 (324)
10 cd02660 Peptidase_C19D A subfa 100.0 5.1E-50 1.1E-54 442.0 26.0 145 679-826 175-328 (328)
11 KOG1868 Ubiquitin C-terminal h 100.0 1.3E-51 2.7E-56 472.6 13.5 293 271-827 297-645 (653)
12 cd02669 Peptidase_C19M A subfa 100.0 3.2E-49 7E-54 449.7 25.3 136 679-826 302-440 (440)
13 cd02659 peptidase_C19C A subfa 100.0 1.5E-48 3.3E-53 431.3 26.5 146 681-827 152-331 (334)
14 cd02662 Peptidase_C19F A subfa 100.0 5.1E-48 1.1E-52 406.7 23.6 122 681-826 97-240 (240)
15 cd02657 Peptidase_C19A A subfa 100.0 2.3E-48 5E-53 424.5 20.3 135 681-826 161-305 (305)
16 cd02661 Peptidase_C19E A subfa 100.0 1.2E-47 2.6E-52 418.0 23.5 141 681-826 163-304 (304)
17 cd02658 Peptidase_C19B A subfa 100.0 9E-47 1.9E-51 413.1 26.5 131 679-826 177-311 (311)
18 cd02674 Peptidase_C19R A subfa 100.0 2.4E-45 5.1E-50 384.1 21.1 147 680-826 84-230 (230)
19 cd02665 Peptidase_C19I A subfa 100.0 2.1E-41 4.6E-46 348.6 17.0 127 681-826 94-228 (228)
20 cd02673 Peptidase_C19Q A subfa 100.0 2.5E-40 5.5E-45 347.0 18.9 130 681-826 111-245 (245)
21 KOG1873 Ubiquitin-specific pro 100.0 2.1E-40 4.6E-45 368.7 6.3 149 678-827 676-876 (877)
22 cd02672 Peptidase_C19P A subfa 100.0 1.8E-38 4E-43 337.4 15.5 136 680-826 117-268 (268)
23 KOG1867 Ubiquitin-specific pro 100.0 6.9E-38 1.5E-42 354.2 15.2 144 681-827 335-483 (492)
24 cd02257 Peptidase_C19 Peptidas 100.0 6.6E-37 1.4E-41 320.8 21.3 142 681-826 100-255 (255)
25 KOG0944 Ubiquitin-specific pro 100.0 2.4E-36 5.3E-41 333.7 18.3 140 679-827 472-761 (763)
26 cd02666 Peptidase_C19J A subfa 100.0 3E-37 6.4E-42 338.1 10.6 122 680-826 189-343 (343)
27 KOG1866 Ubiquitin carboxyl-ter 100.0 3.2E-37 7E-42 342.0 1.2 146 681-827 247-433 (944)
28 COG5077 Ubiquitin carboxyl-ter 100.0 1.7E-36 3.6E-41 336.3 5.9 145 681-827 339-510 (1089)
29 PF00443 UCH: Ubiquitin carbox 100.0 1.3E-34 2.8E-39 307.6 19.8 120 701-825 143-269 (269)
30 KOG4598 Putative ubiquitin-spe 100.0 7.6E-36 1.7E-40 327.1 3.5 146 681-827 215-440 (1203)
31 cd02670 Peptidase_C19N A subfa 100.0 1.8E-31 3.9E-36 277.3 15.9 124 679-826 79-241 (241)
32 COG5207 UBP14 Isopeptidase T [ 100.0 1.5E-31 3.2E-36 286.1 14.7 145 679-827 460-748 (749)
33 KOG1864 Ubiquitin-specific pro 100.0 2.1E-30 4.7E-35 297.5 13.4 143 681-826 422-570 (587)
34 KOG1863 Ubiquitin carboxyl-ter 100.0 3.7E-30 8E-35 318.5 9.7 145 681-827 319-484 (1093)
35 PF13423 UCH_1: Ubiquitin carb 99.9 2.1E-23 4.5E-28 226.7 20.0 124 680-807 163-295 (295)
36 KOG1871 Ubiquitin-specific pro 99.9 1.1E-24 2.4E-29 229.4 8.9 121 706-827 287-418 (420)
37 KOG1872 Ubiquitin-specific pro 99.9 5.4E-23 1.2E-27 222.3 4.1 112 713-826 297-467 (473)
38 KOG2026 Spindle pole body prot 99.8 4.9E-21 1.1E-25 200.9 9.6 137 679-827 302-440 (442)
39 PF06337 DUSP: DUSP domain; I 99.7 7.1E-18 1.5E-22 152.6 6.0 85 1-97 11-98 (99)
40 smart00695 DUSP Domain in ubiq 99.6 6.6E-16 1.4E-20 135.9 6.5 71 1-98 14-85 (86)
41 PF14836 Ubiquitin_3: Ubiquiti 99.4 1E-12 2.2E-17 112.9 8.7 83 115-201 2-87 (88)
42 KOG1275 PAB-dependent poly(A) 98.8 2.1E-08 4.5E-13 116.2 10.1 124 701-825 702-860 (1118)
43 PF14533 USP7_C2: Ubiquitin-sp 98.1 7.9E-05 1.7E-09 77.0 14.6 142 400-555 3-156 (213)
44 PF15499 Peptidase_C98: Ubiqui 96.6 0.0017 3.7E-08 66.8 3.5 82 702-807 172-253 (275)
45 PF14560 Ubiquitin_2: Ubiquiti 95.7 0.071 1.5E-06 46.8 8.8 66 125-190 15-82 (87)
46 cd01796 DDI1_N DNA damage indu 95.0 0.098 2.1E-06 44.1 7.1 62 122-188 8-69 (71)
47 PTZ00044 ubiquitin; Provisiona 93.6 0.34 7.3E-06 41.1 7.7 64 122-191 9-72 (76)
48 cd01807 GDX_N ubiquitin-like d 93.3 0.4 8.7E-06 40.6 7.7 64 122-191 9-72 (74)
49 cd01799 Hoil1_N Ubiquitin-like 93.3 0.3 6.6E-06 41.6 6.8 60 123-188 12-72 (75)
50 cd01812 BAG1_N Ubiquitin-like 92.8 0.37 8E-06 40.2 6.6 61 123-189 9-69 (71)
51 cd01789 Alp11_N Ubiquitin-like 92.8 0.69 1.5E-05 40.4 8.5 64 126-189 15-79 (84)
52 cd01810 ISG15_repeat2 ISG15 ub 92.5 0.64 1.4E-05 39.3 7.7 65 121-191 6-70 (74)
53 cd01763 Sumo Small ubiquitin-r 92.3 0.95 2E-05 39.7 8.8 64 122-191 20-83 (87)
54 PF00240 ubiquitin: Ubiquitin 92.2 0.66 1.4E-05 38.4 7.4 61 124-190 6-66 (69)
55 cd01806 Nedd8 Nebb8-like ubiq 92.1 0.79 1.7E-05 38.6 7.9 63 123-191 10-72 (76)
56 cd01798 parkin_N amino-termina 91.9 0.71 1.5E-05 38.5 7.2 61 122-188 7-67 (70)
57 cd01809 Scythe_N Ubiquitin-lik 91.6 0.81 1.8E-05 38.1 7.3 61 122-188 9-69 (72)
58 cd01795 USP48_C USP ubiquitin- 91.5 0.5 1.1E-05 41.9 5.9 62 125-191 16-77 (107)
59 cd01803 Ubiquitin Ubiquitin. U 91.2 1.2 2.5E-05 37.6 7.9 64 122-191 9-72 (76)
60 cd01808 hPLIC_N Ubiquitin-like 90.9 0.94 2E-05 38.0 6.9 57 126-188 12-68 (71)
61 cd01794 DC_UbP_C dendritic cel 90.4 0.94 2E-05 38.0 6.5 60 122-187 7-66 (70)
62 cd01805 RAD23_N Ubiquitin-like 90.0 1.8 3.9E-05 36.7 8.1 63 123-191 10-74 (77)
63 cd01802 AN1_N ubiquitin-like d 89.9 2.4 5.2E-05 38.5 9.2 64 122-191 36-99 (103)
64 cd01797 NIRF_N amino-terminal 89.8 2 4.3E-05 36.9 8.1 60 127-192 15-75 (78)
65 cd01793 Fubi Fubi ubiquitin-li 89.6 1.6 3.6E-05 36.8 7.5 62 124-191 9-70 (74)
66 cd01804 midnolin_N Ubiquitin-l 89.6 1.8 3.9E-05 37.1 7.8 60 123-189 11-70 (78)
67 cd01791 Ubl5 UBL5 ubiquitin-li 89.3 2.1 4.6E-05 36.2 7.8 60 123-188 11-70 (73)
68 cd01792 ISG15_repeat1 ISG15 ub 88.8 2.2 4.9E-05 36.6 7.8 65 123-191 12-76 (80)
69 PF00789 UBX: UBX domain; Int 88.2 2.2 4.8E-05 36.7 7.4 68 120-189 13-81 (82)
70 PF11976 Rad60-SLD: Ubiquitin- 86.8 2.1 4.6E-05 35.8 6.3 60 121-186 8-68 (72)
71 cd01800 SF3a120_C Ubiquitin-li 86.6 2.4 5.3E-05 36.0 6.6 61 125-191 9-69 (76)
72 smart00213 UBQ Ubiquitin homol 86.1 2.2 4.8E-05 34.3 6.0 54 124-183 10-63 (64)
73 PF11543 UN_NPL4: Nuclear pore 85.6 1.9 4.2E-05 37.2 5.5 66 122-189 12-78 (80)
74 cd01813 UBP_N UBP ubiquitin pr 85.5 3 6.6E-05 35.4 6.6 62 124-188 10-71 (74)
75 cd01769 UBL Ubiquitin-like dom 85.5 3.9 8.5E-05 33.3 7.3 60 123-188 7-66 (69)
76 smart00166 UBX Domain present 83.9 7.6 0.00016 33.3 8.5 69 119-189 10-79 (80)
77 PF05408 Peptidase_C28: Foot-a 82.6 0.57 1.2E-05 46.2 1.1 24 273-296 31-54 (193)
78 cd01773 Faf1_like1_UBX Faf1 ik 79.5 14 0.00031 32.0 8.5 71 119-191 11-81 (82)
79 cd01767 UBX UBX (ubiquitin reg 79.2 13 0.00029 31.5 8.3 67 119-189 8-75 (77)
80 cd01771 Faf1_UBX Faf1 UBX doma 78.4 15 0.00033 31.7 8.4 71 119-191 10-80 (80)
81 cd01774 Faf1_like2_UBX Faf1 ik 77.6 14 0.0003 32.4 7.9 69 120-189 11-83 (85)
82 PF14560 Ubiquitin_2: Ubiquiti 77.1 23 0.0005 30.8 9.4 64 429-492 14-80 (87)
83 cd06406 PB1_P67 A PB1 domain i 72.4 12 0.00026 32.3 6.0 34 125-158 12-45 (80)
84 PF05408 Peptidase_C28: Foot-a 72.1 4 8.8E-05 40.4 3.5 34 777-812 129-164 (193)
85 TIGR00601 rad23 UV excision re 70.7 12 0.00025 42.3 7.3 65 122-192 9-76 (378)
86 PF11470 TUG-UBL1: GLUT4 regul 68.8 8.4 0.00018 31.9 4.2 36 121-156 4-39 (65)
87 COG3478 Predicted nucleic-acid 67.5 4.7 0.0001 32.8 2.4 36 699-734 3-40 (68)
88 PLN02560 enoyl-CoA reductase 65.9 22 0.00047 39.0 8.0 62 127-189 17-81 (308)
89 cd01768 RA RA (Ras-associating 63.9 46 0.00099 28.8 8.3 53 429-481 13-67 (87)
90 cd01760 RBD Ubiquitin-like dom 58.9 42 0.00092 28.4 6.8 66 120-190 6-71 (72)
91 PF00788 RA: Ras association ( 58.8 46 0.00099 28.8 7.5 47 114-160 4-55 (93)
92 cd01772 SAKS1_UBX SAKS1-like U 57.0 50 0.0011 28.3 7.2 67 120-189 11-78 (79)
93 KOG0010 Ubiquitin-like protein 56.9 29 0.00063 39.8 7.0 69 117-191 18-86 (493)
94 PF14533 USP7_C2: Ubiquitin-sp 56.7 36 0.00077 35.2 7.4 53 125-178 35-90 (213)
95 PF02196 RBD: Raf-like Ras-bin 56.6 71 0.0015 26.8 7.8 64 120-190 7-70 (71)
96 cd01817 RGS12_RBD Ubiquitin do 55.5 70 0.0015 27.1 7.4 65 120-191 6-70 (73)
97 PF08817 YukD: WXG100 protein 55.3 33 0.00071 29.3 5.7 63 124-188 13-78 (79)
98 cd01801 Tsc13_N Ubiquitin-like 54.2 31 0.00067 29.3 5.4 54 131-188 20-74 (77)
99 smart00314 RA Ras association 54.0 1E+02 0.0022 26.8 8.8 53 429-481 16-69 (90)
100 cd01768 RA RA (Ras-associating 52.3 53 0.0012 28.3 6.7 40 123-162 12-53 (87)
101 cd01779 Myosin_IXb_RA ubitquit 51.0 1.2E+02 0.0025 27.1 8.2 63 415-477 11-73 (105)
102 KOG1870 Ubiquitin C-terminal h 49.1 9.9 0.00021 47.6 2.1 120 679-811 481-600 (842)
103 cd01815 BMSC_UbP_N Ubiquitin-l 47.4 36 0.00078 29.0 4.6 51 132-188 19-72 (75)
104 PF00788 RA: Ras association ( 46.0 1.5E+02 0.0033 25.5 8.7 67 415-481 3-71 (93)
105 cd01791 Ubl5 UBL5 ubiquitin-li 44.7 97 0.0021 26.1 6.9 67 416-493 3-71 (73)
106 PF12436 USP7_ICP0_bdg: ICP0-b 44.6 55 0.0012 34.7 6.6 64 127-191 88-152 (249)
107 cd01770 p47_UBX p47-like ubiqu 44.2 1E+02 0.0022 26.4 7.1 62 119-183 10-72 (79)
108 KOG1769 Ubiquitin-like protein 42.9 1.7E+02 0.0038 26.3 8.2 66 114-186 22-87 (99)
109 cd00196 UBQ Ubiquitin-like pro 42.7 71 0.0015 23.9 5.6 36 122-157 6-41 (69)
110 cd01788 ElonginB Ubiquitin-lik 42.3 55 0.0012 30.1 5.1 61 126-192 14-81 (119)
111 smart00455 RBD Raf-like Ras-bi 41.3 1.3E+02 0.0028 25.2 7.0 64 120-190 6-69 (70)
112 cd01804 midnolin_N Ubiquitin-l 40.8 89 0.0019 26.6 6.2 64 416-491 3-68 (78)
113 PF02017 CIDE-N: CIDE-N domain 40.3 1.2E+02 0.0025 26.2 6.6 45 114-161 4-48 (78)
114 cd01789 Alp11_N Ubiquitin-like 40.2 1.3E+02 0.0027 26.1 7.1 31 431-461 15-45 (84)
115 PF09379 FERM_N: FERM N-termin 39.7 1.5E+02 0.0032 24.9 7.4 60 121-181 4-65 (80)
116 smart00314 RA Ras association 39.6 1.5E+02 0.0032 25.8 7.6 39 122-160 14-54 (90)
117 cd01782 AF6_RA_repeat1 Ubiquit 38.1 3.2E+02 0.007 25.1 9.3 76 405-480 11-91 (112)
118 PF12436 USP7_ICP0_bdg: ICP0-b 38.0 72 0.0016 33.8 6.3 39 123-161 189-227 (249)
119 cd01792 ISG15_repeat1 ISG15 ub 34.4 1.4E+02 0.0031 25.4 6.5 49 416-469 4-52 (80)
120 cd01790 Herp_N Homocysteine-re 33.4 1.3E+02 0.0029 25.9 6.0 52 127-184 17-72 (79)
121 cd01787 GRB7_RA RA (RAS-associ 32.7 2E+02 0.0044 25.2 6.9 60 415-478 3-63 (85)
122 KOG4495 RNA polymerase II tran 31.8 73 0.0016 28.3 4.0 54 125-182 13-66 (110)
123 cd06535 CIDE_N_CAD CIDE_N doma 31.7 1.5E+02 0.0033 25.4 5.9 31 133-163 20-50 (77)
124 cd01615 CIDE_N CIDE_N domain, 31.3 1.7E+02 0.0037 25.2 6.2 30 133-162 20-49 (78)
125 KOG2463 Predicted RNA-binding 30.0 35 0.00077 37.0 2.3 35 700-735 257-292 (376)
126 cd01805 RAD23_N Ubiquitin-like 29.8 2.2E+02 0.0047 23.7 6.8 25 430-454 12-36 (77)
127 smart00295 B41 Band 4.1 homolo 29.8 3.4E+02 0.0073 27.1 9.6 66 112-179 3-70 (207)
128 PF09855 DUF2082: Nucleic-acid 29.5 45 0.00097 27.6 2.3 34 701-734 1-36 (64)
129 cd01777 SNX27_RA Ubiquitin dom 29.0 1.1E+02 0.0025 26.8 4.8 41 114-155 3-43 (87)
130 KOG1887 Ubiquitin carboxyl-ter 28.8 25 0.00053 42.7 1.0 87 715-810 675-765 (806)
131 cd06539 CIDE_N_A CIDE_N domain 28.6 2E+02 0.0044 24.8 6.1 30 134-163 21-50 (78)
132 PF08715 Viral_protease: Papai 28.3 71 0.0015 35.2 4.3 30 273-302 100-130 (320)
133 cd01783 DAGK_delta_RA Ubiquiti 28.1 1.3E+02 0.0028 27.0 5.1 49 107-159 4-55 (97)
134 cd01799 Hoil1_N Ubiquitin-like 27.8 2.3E+02 0.005 24.0 6.5 30 430-459 14-43 (75)
135 smart00266 CAD Domains present 27.6 2.1E+02 0.0046 24.4 6.0 30 133-162 18-47 (74)
136 cd01813 UBP_N UBP ubiquitin pr 27.1 1.4E+02 0.003 25.2 5.1 34 430-463 11-44 (74)
137 PF15499 Peptidase_C98: Ubiqui 26.8 27 0.00058 36.8 0.7 30 365-394 115-144 (275)
138 cd01769 UBL Ubiquitin-like dom 26.2 2.2E+02 0.0047 22.7 6.1 55 431-492 10-66 (69)
139 KOG3751 Growth factor receptor 26.1 1.1E+02 0.0023 35.6 5.3 72 407-482 181-253 (622)
140 PF13019 Telomere_Sde2: Telome 25.9 3.3E+02 0.0072 26.9 8.0 55 416-470 2-56 (162)
141 cd01785 PDZ_GEF_RA Ubiquitin-l 25.2 2.9E+02 0.0063 23.8 6.3 37 114-151 4-40 (85)
142 PF00240 ubiquitin: Ubiquitin 24.3 1.3E+02 0.0028 24.4 4.4 30 430-459 7-36 (69)
143 cd01806 Nedd8 Nebb8-like ubiq 24.3 1.9E+02 0.004 23.9 5.4 38 417-458 3-40 (76)
144 PF00770 Peptidase_C5: Adenovi 24.3 1E+02 0.0023 30.5 4.1 32 773-804 21-53 (183)
145 PRK13798 putative OHCU decarbo 23.2 90 0.0019 31.0 3.6 29 526-557 110-138 (166)
146 smart00666 PB1 PB1 domain. Pho 22.6 2E+02 0.0044 24.2 5.4 36 122-157 9-44 (81)
147 cd01782 AF6_RA_repeat1 Ubiquit 22.4 4.7E+02 0.01 24.0 7.5 37 125-161 37-78 (112)
148 TIGR03180 UraD_2 OHCU decarbox 22.2 97 0.0021 30.5 3.6 29 526-557 105-133 (158)
149 cd01812 BAG1_N Ubiquitin-like 21.6 1.4E+02 0.0029 24.4 4.0 29 431-459 12-40 (71)
150 TIGR03164 UHCUDC OHCU decarbox 21.5 1E+02 0.0022 30.3 3.6 29 526-557 105-133 (157)
151 cd01784 rasfadin_RA Ubiquitin- 21.3 2.7E+02 0.0058 24.5 5.6 39 123-161 12-52 (87)
152 PF01473 CW_binding_1: Putativ 21.2 56 0.0012 19.8 1.1 14 790-805 3-16 (19)
153 KOG4248 Ubiquitin-like protein 21.0 1.3E+02 0.0028 37.8 5.0 61 122-189 11-71 (1143)
154 cd01803 Ubiquitin Ubiquitin. U 20.8 1.9E+02 0.0041 23.8 4.8 28 431-458 13-40 (76)
155 cd06411 PB1_p51 The PB1 domain 20.2 1.7E+02 0.0036 25.3 4.1 33 127-159 10-42 (78)
156 PF13881 Rad60-SLD_2: Ubiquiti 20.2 6.7E+02 0.015 23.1 8.5 73 113-191 3-86 (111)
No 1
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-105 Score=867.93 Aligned_cols=682 Identities=33% Similarity=0.533 Sum_probs=497.1
Q ss_pred CCCCcccCcccccccccCCCCCCccccccccCCCcEEEcCHHHHHHHHHHhc-CCCccceEEcccCCCcceeeEEEeceE
Q 040385 36 KRPSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYG-GGPTLARKVISSGLSQTELAVEVYPLR 114 (827)
Q Consensus 36 ~~pgpIdNs~L~~~~~~~~~~~~~~l~~~l~~~~Dy~~vp~~vW~~l~~wYG-ggp~i~R~Vi~~~~~~~~~~vElyP~~ 114 (827)
..||||+-.+|++- + ...|+..+.++.||.+|.+.+|.+|++||| .|+.++|.++--+. .....+|+||+.
T Consensus 67 ~~pgPi~q~~i~d~----e---~e~lk~sl~e~idysiis~~vw~llvrwyGl~gl~~pr~tvll~s-es~p~ve~yp~~ 138 (823)
T COG5560 67 GSPGPIVQGPIVDF----E---PESLKKSLREGIDYSIISGAVWQLLVRWYGLAGLITPRITVLLPS-ESAPEVESYPVV 138 (823)
T ss_pred CCCCCCCccccccc----C---hhhcchhhhcCCCeeeechHHHHHHHHHhcccccceeeEEecccc-ccCCccccccce
Confidence 56999999999972 1 457999999999999999999999999999 68899999876543 334489999999
Q ss_pred EEEEEcCC---------CCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCcccccccccccccc-ccccCCCC
Q 040385 115 LQLLVMPR---------GECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLD-DANIQMDQ 184 (827)
Q Consensus 115 l~~~~~~~---------~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~-d~~l~~~q 184 (827)
++++.+.. .+...+.+|+..|+.+|.+++..+|-++.+++|||++...+...-+-..+.-+. .+....++
T Consensus 139 f~lh~Lf~ing~~~n~gh~p~~~s~ss~~tlrdl~e~vmnaf~~psD~FRLw~v~~~~~~~r~~~~s~f~~~~~~a~~~~ 218 (823)
T COG5560 139 FKLHWLFSINGSLINLGHDPVPHSASSHGTLRDLSERVMNAFVDPSDDFRLWDVVPEIMGLRLGLDSFFRRYRVLASDGR 218 (823)
T ss_pred EEEEEEEeccchhhhcCCCcceeeccccchHHHHHHHHHHHhcCcccceeEEEecCCcccccccCHHHHhhcchhccchh
Confidence 99987654 134678999999999999999999999999999999875432211100000000 00000111
Q ss_pred e----EEEEEEecCCCCcccCCcccccccccccccccccCCcccccccCCCcccCCCCCCCCCcccCCCCCccCCCCCCC
Q 040385 185 D----ILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNT 260 (827)
Q Consensus 185 ~----il~E~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (827)
. +.+|+- .| .+..-+. ....|+.....+ ... +..
T Consensus 219 ~l~~~t~~el~--~d--------------------------~s~lll~--kit~np~wlvds--i~~----------~~n 256 (823)
T COG5560 219 VLHPLTRLELF--ED--------------------------RSVLLLS--KITRNPDWLVDS--IVD----------DHN 256 (823)
T ss_pred hhcccHHHHhc--cc--------------------------hhhhHHh--hhccCCccceee--ecc----------hhh
Confidence 0 001111 00 0000000 000011100000 000 000
Q ss_pred CCCCCccccCCCCCccCcccCCCccchhhHHHhhhCcHHHHHHHHH-hhhhhhccCCCCcHH------------------
Q 040385 261 LGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLGMV------------------ 321 (827)
Q Consensus 261 ~~~~~~~~~~~~~g~~GL~NlGNTCYmNSvLQcL~~~~~l~~~~l~-~~~~~~~~~n~~~~~------------------ 321 (827)
++. . +.-|.+||.||||||||||+||||.|+++|++||+. .|.+++|..||+|++
T Consensus 257 ~si--n----ke~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~ 330 (823)
T COG5560 257 RSI--N----KEAGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGN 330 (823)
T ss_pred hhH--H----hhccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCcc
Confidence 111 1 113999999999999999999999999999999996 699999999999987
Q ss_pred -----------------------------HHHHHHHHHHHhhhccccCCCceeccCCCCCC---cHHHHHHHHHhhhccC
Q 040385 322 -----------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRP---DEEVADEYWANHIARN 369 (827)
Q Consensus 322 -----------------------------Efl~~lLd~L~e~l~~~~~~~~~~~~~~~~~~---~~~~a~e~~~~~~~~~ 369 (827)
||++||||+|||||||+.+|||.+.++-.... .+..|+++|..|+.||
T Consensus 331 ~haf~Ps~fK~tIG~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRN 410 (823)
T COG5560 331 LHAFTPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRN 410 (823)
T ss_pred ccccChHHHHHHHhhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999987644333 3678999999999999
Q ss_pred CCceeecccceEeeeEecCCCCCeeeeecCceeEEEeCCCCccceEEEEEEcCCCCCcCeEEEEEecCCCcHHHHHHHHH
Q 040385 370 DSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLG 449 (827)
Q Consensus 370 ~s~I~~lF~G~~~s~l~C~~C~~~s~~~e~F~~LsL~lp~~~~~~~~~~~~~~~~~~~p~~~~v~~~k~~~~~~l~~~l~ 449 (827)
+|+|+|+|+|.++||+.|+.|+.+|++||||++|+||||....|..++++||.+|...| ..+++.+.+++.+|+..+.
T Consensus 411 dSiItdLFqgmyKSTL~Cp~C~~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~p--l~iel~~sSt~~~lk~lv~ 488 (823)
T COG5560 411 DSIITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQP--LKIELDASSTIRGLKKLVD 488 (823)
T ss_pred cccHHHHHHHHhhceeeccCcCceeeeecchhhccccCchhhcccccEEEECCCCCCCc--eEEEEeccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888 5677888999999999988
Q ss_pred hhcCCCCCCcEEEEEEeCCceEEeccCcccc-ccccCCCCcEEEEEccCCcccceEEEEeeeecccCcCccccccCceee
Q 040385 450 NICSLKQSEELKVAEIQNHSIQRFLDDPLIS-LSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAY 528 (827)
Q Consensus 450 ~~~~~~~~~~l~~~e~~~~~~~~~~~d~~~~-l~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (827)
+..|+...-.+.+.++|.++.++.++...+. +..|...|.+|.|+ ...+...++++|-+.+. ...+...|
T Consensus 489 ~~~gk~gc~ei~v~~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe---~~~ngi~vpvvh~~~~~------gYks~rlF 559 (823)
T COG5560 489 AEYGKLGCFEIKVMCIYYGGNYNMLEPADKVLLQDIPQTDFVYLYE---TNDNGIEVPVVHLRIEK------GYKSKRLF 559 (823)
T ss_pred HHhccCCccceeEEEEEeccchhhcchhhHHHHhhcCccceEEEee---cCCCCeEEEEEeccccc------cccchhhh
Confidence 8777766668899999999999999876664 45799999999999 44455888999985432 25677899
Q ss_pred ccce-EEEeecCCCCCHHHHHHHHHHHhCCcccccccccCCCCCCCCcccCCCCCCCCCCCCCCCcccccccCccccCCC
Q 040385 529 GTPL-VSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLP 607 (827)
Q Consensus 529 g~P~-~~~~~~~~~~s~~~i~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (827)
|.|| .+.+.. ...-.+++.+.+.+.+-...... ....-++..... . .++......++..
T Consensus 560 g~pflqlnv~~-~~~i~~kLvkE~~ell~~v~~k~----tdvd~~~~q~~l-~--------------r~es~p~~wl~l~ 619 (823)
T COG5560 560 GDPFLQLNVLI-KASIYDKLVKEFEELLVLVEMKK----TDVDLVSEQVRL-L--------------REESSPSSWLKLE 619 (823)
T ss_pred CCcceEEEeec-chhhHHHHHHHHHHHHHHHhhcc----hhhhhhhhhccc-h--------------hcccCcchhhhhh
Confidence 9996 344431 12222333222222211110000 000000000000 0 0000000000000
Q ss_pred ----CcceEEecCCCccccCCcCCCcccccCCCCCceEEEEecChhhHhhhhh-hhhhhhhhhccCCcccccCCCCCCCH
Q 040385 608 ----NLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNT-HFLENLLEVFKNGPVTKKARTEPLSL 682 (827)
Q Consensus 608 ----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~sL 682 (827)
.-....+++.+ . + .....+.+.++|....+....+ .......++ + ...+.+||
T Consensus 620 teid~kree~veeE~-----------~--~-n~nd~vvi~cew~ek~y~~lFsy~~lw~~~ei---~-----~~~rtiTL 677 (823)
T COG5560 620 TEIDTKREEQVEEEG-----------Q--M-NFNDAVVISCEWEEKRYLSLFSYDPLWTIREI---G-----AAERTITL 677 (823)
T ss_pred hhccchhhhhhhhhh-----------c--c-CCCcceEEeeeccccchhhhhcCCccchhHHh---h-----hccCCCcH
Confidence 00000000000 0 0 1123467789999877654322 111111111 0 01368999
Q ss_pred HHHHHHhhcccccCCCCCCCCccCcccceeEEEEEeeecCCeEEEEEeeeeecccccceeeeeEeccccccccccccccC
Q 040385 683 YTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANK 762 (827)
Q Consensus 683 ~dCL~~F~~~E~L~~~d~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~Ki~~~V~fPl~~Ldl~~~~~~~ 762 (827)
+|||++|.++|.|+..|.||||.||.+++|+|++.||++|.|||||||||++.+..+.|+++.|+|||.+|||+.+....
T Consensus 678 ~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmelwrlP~iLiihLkRFss~rsfrdKiddlVeyPiddldLs~~~~~~ 757 (823)
T COG5560 678 QDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLSGVEYMV 757 (823)
T ss_pred HHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhhhcCChheeeehhhhhhcccchhhhhhhhccccccccccceEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred CCCccceEEEEEEEEeecCCCcceEEEEEEeCCCCCEEEEeCCcceecCcccccCCCeEEEEeeC
Q 040385 763 NSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827 (827)
Q Consensus 763 ~~~~~~~Y~L~aVi~H~G~~~~GHY~a~~k~~~~~~W~~fnD~~V~~~~~~~v~~~~aYiLfY~R 827 (827)
++ ....|+||||.||+|++++||||||+|++.+++||+|||++|+++.+++.++++||+|||+|
T Consensus 758 ~~-p~liydlyavDNHygglsgGHYtAyarn~~n~~wy~fdDsritevdped~vtssaYvLFyrr 821 (823)
T COG5560 758 DD-PRLIYDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRR 821 (823)
T ss_pred cC-cceEEEeeeccccccccCCcceeeeeecccCCceEEecCccccccCccccccceeEEEEEEe
Confidence 55 55999999999999999999999999999999999999999999999999999999999998
No 2
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-88 Score=812.94 Aligned_cols=766 Identities=37% Similarity=0.560 Sum_probs=587.5
Q ss_pred ChHHHHHhccCCCCCCCCCCCccccccccCCCCCCCCCCcccCcccccccccCCCCCCccccccccCCCcEEEcCHHHHH
Q 040385 1 WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWN 80 (827)
Q Consensus 1 W~~~W~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgpIdNs~L~~~~~~~~~~~~~~l~~~l~~~~Dy~~vp~~vW~ 80 (827)
|+.+|++|||.... .. ....+....++|++||...+. . ... ..++|..+.++.||.++|+.+|+
T Consensus 21 ~~~~~~~~~g~~~~-~~----------~~~~~~~~~k~~~~~n~~~~~-~-~~~---~~~~~~~~~e~~~~~~~~~~~~~ 84 (842)
T KOG1870|consen 21 CLEQWQSYVGLESY-HE----------ISTIHSQAPKHGLTDNLTFLR-C-DAC---DKTLRVSLLEGLDYTISPRSVQK 84 (842)
T ss_pred hhhhccccccceee-ec----------cccccccccccccccCccchh-H-hhh---hhHHHhhhccccccccCCHHHHh
Confidence 88999999999221 11 112334558899999999997 2 111 12799999999999999999999
Q ss_pred HHHHHh-cCCCccceEEcccCCCcceeeEEEeceEEEEEEcCCCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEe
Q 040385 81 QLHSWY-GGGPTLARKVISSGLSQTELAVEVYPLRLQLLVMPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDY 159 (827)
Q Consensus 81 ~l~~wY-Gggp~i~R~Vi~~~~~~~~~~vElyP~~l~~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~ 159 (827)
.+..|| .|++++.|.|+..+.....+.+|+||..+.++............+..+|+.++.+..+..+.++.+..|+|.+
T Consensus 85 ~~~~~~~~~~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~~~ 164 (842)
T KOG1870|consen 85 LLVEWFKSGGAAILRAVFDEGEIERDDFVELYPRGLTLLKNSGNSRTSLALQADSTCPPLTSYFLESGGLPRTKFAIWAS 164 (842)
T ss_pred hccccccCCCccchhhhhcccccccCCcccccchhhhhccCCCCccceeccccccCccHHHHHHHHhcCCCcccchhhhh
Confidence 999999 5889999999998876666899999999999887775555589999999999999999999999999999999
Q ss_pred eCCcccccccccc-ccccccccCCCCeEEEEEEecCCCCcccCCcccccccccccccccccCCcccccccCCCcccCCCC
Q 040385 160 YGHRKHALMNDMD-RTLDDANIQMDQDILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTS 238 (827)
Q Consensus 160 ~~~~~~~ll~~~~-~tl~d~~l~~~q~il~E~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 238 (827)
+......++...+ .++..+.+..++.+++|+.+. + ..|++......... . +.. ....+++...+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~--~--~~~----~~~~~~~~~~s---- 229 (842)
T KOG1870|consen 165 YNEKYLSLWYKSDPGKLVPTVLFQGRKMVLEVFRK-F--ASQPSDMTLRCWMD--W--LSE----RDPDASGTKET---- 229 (842)
T ss_pred hhHhhhcccccccccccccccccccceEEeeeccc-c--ccchhhhchhhccc--c--ccc----cccccCCCccc----
Confidence 9887777776666 788999999999999999974 4 67776543221100 0 000 00001110000
Q ss_pred CCCCCcccCCCCCccCCCCCCCCCCCCccccCCCCCccCcccCCCccchhhHHHhhhCcHHHHHHHHHhhh-hhhccCCC
Q 040385 239 RNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDYR-REINWQNP 317 (827)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~GL~NlGNTCYmNSvLQcL~~~~~l~~~~l~~~~-~~~~~~n~ 317 (827)
+.+...........+|.+||.|+||||||||.+|||.+++++++||+..+. .+++..|+
T Consensus 230 --------------------~~~~~~~~~~~~~~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~ 289 (842)
T KOG1870|consen 230 --------------------RVDFPSEEISSPSERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNP 289 (842)
T ss_pred --------------------ccccccccccCCCcccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCC
Confidence 001111112234568999999999999999999999999999999997554 45898888
Q ss_pred CcHH-----------------------------------------------HHHHHHHHHHHhhhccccCCCceeccCCC
Q 040385 318 LGMV-----------------------------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDAD 350 (827)
Q Consensus 318 ~~~~-----------------------------------------------Efl~~lLd~L~e~l~~~~~~~~~~~~~~~ 350 (827)
+++. |||+||||+||++++++..+||++.++.+
T Consensus 290 ~~~~~~~~~~~~~l~~~~~s~~~~~v~~~~~~~~~~~~a~~~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~ 369 (842)
T KOG1870|consen 290 LGSAGEVASSFADLIKQLWSGNKSAVAPTSFRTSLASFASEFSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSD 369 (842)
T ss_pred CcccceechhhhhHHHHhccCCccccCchhhhhhhhhccccccCcccccchhhhhHHhhhhhHHhhccCCcCcccccccc
Confidence 8765 99999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHhhhccCCCceeecccceEeeeEecCCCCCeeeeecCceeEEEeCCCCccceEEEEEEcCCCCCcCeE
Q 040385 351 GRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPST 430 (827)
Q Consensus 351 ~~~~~~~a~e~~~~~~~~~~s~I~~lF~G~~~s~l~C~~C~~~s~~~e~F~~LsL~lp~~~~~~~~~~~~~~~~~~~p~~ 430 (827)
++++++.+.+.|+.+..++.|+|+++|+|+++++++|+.|++++++||||.+|+||+|....+...+++++.++...|.+
T Consensus 370 ~rp~~~~~~~~~~~~~~~~~s~i~d~~~~~~~S~~~c~~C~~~svt~d~f~~Lslp~p~~~~~~~~~~~~~~~~~~~p~~ 449 (842)
T KOG1870|consen 370 LRPDQEVAAEVWDYHLKRNRSVIVDLFDGTYKSTLQCPTCGKVSVTFDPFGYLSLPLPGKEIQKLEVTVPHGDGFRKPGA 449 (842)
T ss_pred cchhhhhhHHHHHhhhhhccceeeeeecceecccccCccCCCceEEeeccccccccCCCCcccceeEEEecCCCCCChhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCcHHHHHHHHHhhcCCCCCCcEEEEEEeCCceEEeccCccccccccCCCCcEEEEEccCCcccce-E--EEE
Q 040385 431 YTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAV-F--LQL 507 (827)
Q Consensus 431 ~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~d~~~~l~~i~~~d~i~~ye~~~~~~~~~-~--~~~ 507 (827)
+.+.+++++.+.+|.++|++.+++. ..++..++++.+.+++++......+..|...+.+++|+++....... + +.+
T Consensus 450 ~~~~~~~~~~~~~l~~~l~~~~~~~-~~~l~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~ 528 (842)
T KOG1870|consen 450 LGVSVAKNGRIRDLLEYLSRTVGLL-SWELKPVEILFDCFNKIFAADELKLDSIYSDEELFDYELGVLKVQGSIYAIIVV 528 (842)
T ss_pred eeeeccccchHHHHHHHHHHHhccc-hhhcccceeccchhhhhhccCccccccccCCcceEEeecccccccccceEEEEE
Confidence 9999999999999999999999998 89999999999999999997667788999999999999996322222 2 233
Q ss_pred eeeecccCcCccccccCceeeccceEEEeecCCCCCHHHHHHHHHHHhCCcccc-cccccCCCCCCCCcccCCCCCCCCC
Q 040385 508 IHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLSPFLKK-ESLMHADSFDPSSMVTTVDPSGEAH 586 (827)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~g~P~~~~~~~~~~~s~~~i~~~v~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (827)
.++.................||.|+++.++.....+..++...+....+++... ......+..+..+........+...
T Consensus 529 ~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~t~~~l~~~~~~~~s~~~~~~~~~v~~~~~~~~~~~~~e~~~~s~~ 608 (842)
T KOG1870|consen 529 RFRSRLPRSKGIRSHVSSKLFGLPLLVSVLSGAQSTEEDLLSVICHRTSRYSREPPLNVGYGVDDQSLKEVSEQSAESSS 608 (842)
T ss_pred eeccccccccCcccCCCccccCCcceeeccCCCcccccchhhHHhhcccccCCcCccccccCCCcccccccccccccccc
Confidence 333322222233455677899999999998656778888888888888877543 1111111111111110000000000
Q ss_pred CCCCCCcccccccCccccCCCCcceEEecCCCccccCCcCCCcccccCCCCCceEEEEecChhhHhhhhhhhhhhhhhhc
Q 040385 587 SNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVF 666 (827)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~ 666 (827)
+. +....+++.+....+.... .-......+.........-.+... ....++++|.+.....+..+.....+++.
T Consensus 609 ~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~w~p~~~~~~~~~~~~~~~~~~ 682 (842)
T KOG1870|consen 609 SV--SRDPSEDDNSDQDLSLECL---SEESALRFFQSLESRNKSDSEFEP-GSTSIAVDWSPSAKYKYSSSLVSQPPEVE 682 (842)
T ss_pred cc--cCCChhHhccccccchhhc---cCcccccccccccccccccccccC-CCceeecccChhhcccccccccccccccc
Confidence 00 0000000000000000000 000000000000000000000011 11238999999988877666555566666
Q ss_pred cCCcccccCCCCCCCHHHHHHHhhcccccCCCCCCCCccCcccceeEEEEEeeecCCeEEEEEeeeeecccccceeeeeE
Q 040385 667 KNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFV 746 (827)
Q Consensus 667 ~~~~~~~~~~~~~~sL~dCL~~F~~~E~L~~~d~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~Ki~~~V 746 (827)
..+....+.....++|++||+.|+.+|.|+.+++|||+.|+++++|+|++.+|+||+|||||||||+|.+....|+.+.|
T Consensus 683 ~~~~~~~~~~~~~~sL~~cl~~F~~~E~L~~~~~w~C~~Cke~~~A~Kk~~lwrlPeiLiihLKrF~~~r~~~~k~~~~v 762 (842)
T KOG1870|consen 683 PRGASRSKGSPAPNSLESCLELFSEPETLGKDDRWYCPQCKELRQATKKLDLWRLPEILIIHLKRFQYSRESSSKVKTKV 762 (842)
T ss_pred ccccccccCCCCcccHHHHHHhhcchhcCCccccccChHHHHHHHHhhhhhhhhCCceEEEEeecceeechhhhhhCccc
Confidence 65555555556699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccccccccccCCCCccceEEEEEEEEeecCCCcceEEEEEEeCCCCCEEEEeCCcceecCcccccCCCeEEEEee
Q 040385 747 NFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYR 826 (827)
Q Consensus 747 ~fPl~~Ldl~~~~~~~~~~~~~~Y~L~aVi~H~G~~~~GHY~a~~k~~~~~~W~~fnD~~V~~~~~~~v~~~~aYiLfY~ 826 (827)
+||+..||+++|+.+++. ..|+|+||++|+|++++||||||+|+..+++||.|||+.|++++++++.+++||+|||+
T Consensus 763 ~fPi~~ld~s~~~~~~~~---~~Y~l~av~nHyG~l~~GHYta~~k~~~~~~w~~fdDs~v~~~~~~~i~t~~aY~Lfy~ 839 (842)
T KOG1870|consen 763 EFPLGSLDLSEFVVNKEQ---VLYDLYAVGNHYGQLSGGHYTAYAKNVGDGKWYLFDDSSVSEVDEDEIDTEAAYVLFYR 839 (842)
T ss_pred cCCCcCCCcchhhccCcc---ceeeeeeeecccCCcCCcchhhhhhcCCCCceEEeccccCCCCChhhcccccceEEEEE
Confidence 999999999999998764 89999999999999999999999999889999999999999999999999999999999
Q ss_pred C
Q 040385 827 R 827 (827)
Q Consensus 827 R 827 (827)
|
T Consensus 840 r 840 (842)
T KOG1870|consen 840 R 840 (842)
T ss_pred e
Confidence 8
No 3
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-57 Score=492.44 Aligned_cols=142 Identities=39% Similarity=0.708 Sum_probs=135.8
Q ss_pred CHHHHHHHhhcccccCCCCCCCCccCcccceeEEEEEeeecCCeEEEEEeeeeecccccceeeeeEeccccccccccccc
Q 040385 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760 (827)
Q Consensus 681 sL~dCL~~F~~~E~L~~~d~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~Ki~~~V~fPl~~Ldl~~~~~ 760 (827)
+|.+||+.|++.|.|+++|+|.|++|++++.|.|++.|.++|.||+||||||+. ....||+.+|.|| |.|||.|||.
T Consensus 267 sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF~~--~~~gKI~K~I~fP-E~LDl~PyMS 343 (545)
T KOG1865|consen 267 SLQQALEQFTKPEKLDGENAYHCGRCKQKVPASKQLTIHRAPNVLTLHLKRFSN--GTGGKISKPVSFP-ETLDLQPYMS 343 (545)
T ss_pred hHHHHHHHhhhHHhhCCccccccchhhhhCcccceeeeecCCceEEEeeehhcc--CcccccccccCCc-cccccccccc
Confidence 799999999999999999999999999999999999999999999999999997 5678999999999 8999999999
Q ss_pred cCCCCccceEEEEEEEEeec-CCCcceEEEEEEeCCCCCEEEEeCCcceecCcccccCCCeEEEEeeC
Q 040385 761 NKNSSRRQLYELYALTNHYG-GMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827 (827)
Q Consensus 761 ~~~~~~~~~Y~L~aVi~H~G-~~~~GHY~a~~k~~~~~~W~~fnD~~V~~~~~~~v~~~~aYiLfY~R 827 (827)
.+.+ .+..|.|||||+|.| ...+|||++|||. ..|.||+|||+.|+.++.+.|.+..||||||.|
T Consensus 344 ~~~e-~s~~Y~LYavlVH~g~~~~~GHY~cYvks-~~g~Wy~~DDS~V~~~~~~~VLsq~AYmLfY~R 409 (545)
T KOG1865|consen 344 QPNE-GSTVYKLYAVLVHLGTSCHSGHYFCYVKS-QNGQWYKMDDSEVTQSSIESVLSQQAYILFYAR 409 (545)
T ss_pred CCCC-CCceEEEEEEEEeccccccCCceEEEEEc-CCCceEEccCceeeeccccceecccceEEEEEe
Confidence 6554 789999999999999 8999999999997 788999999999999999999999999999987
No 4
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-55 Score=445.55 Aligned_cols=285 Identities=33% Similarity=0.590 Sum_probs=231.9
Q ss_pred CCccCcccCCCccchhhHHHhhhCcHHHHHHHHH-hhhhhhccCCCCcHH------------------------------
Q 040385 273 VGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLGMV------------------------------ 321 (827)
Q Consensus 273 ~g~~GL~NlGNTCYmNSvLQcL~~~~~l~~~~l~-~~~~~~~~~n~~~~~------------------------------ 321 (827)
..+.||.|+|||||||++||||+.+..|...|.+ .|.+.+|.++|.|..
T Consensus 69 ~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~Hg~~sis~~nF~~ 148 (415)
T COG5533 69 LPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGCHGPKSISPRNFID 148 (415)
T ss_pred cCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccccCCCcccchHHHHH
Confidence 3578999999999999999999999999996664 577778877776532
Q ss_pred ------------------HHHHHHHHHHHhhhccccCC-CceeccCCC-----CCCcHHHHHHHHHhhhccCCCceeecc
Q 040385 322 ------------------ELLAFLLDGLHEDLNRVKHK-PYIKSKDAD-----GRPDEEVADEYWANHIARNDSIIVDVC 377 (827)
Q Consensus 322 ------------------Efl~~lLd~L~e~l~~~~~~-~~~~~~~~~-----~~~~~~~a~e~~~~~~~~~~s~I~~lF 377 (827)
||+.|+||+||||+|....+ |..+.++.. ..+-...++-.|+.|+..+.|+|.++|
T Consensus 149 i~~~~n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L~sn~S~v~~~f 228 (415)
T COG5533 149 ILSGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLRSNKSLVAKTF 228 (415)
T ss_pred HHccccccccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhhccchHHHHHHH
Confidence 99999999999999987654 444444322 122223445579999999999999999
Q ss_pred cceEeeeEecCCCCCeeeeecCceeEEEeCCCCccceEEEEEEcCCCCCcCeEEEEEecCCCcHHHHHHHHHhhcCCCCC
Q 040385 378 QGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQS 457 (827)
Q Consensus 378 ~G~~~s~l~C~~C~~~s~~~e~F~~LsL~lp~~~~~~~~~~~~~~~~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~ 457 (827)
.||++|+++|..|+++|++|.+|..|++|++...
T Consensus 229 ~gq~~srlqC~~C~~TStT~a~fs~l~vp~~~v~---------------------------------------------- 262 (415)
T COG5533 229 FGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEVV---------------------------------------------- 262 (415)
T ss_pred hhhhhhhhhhhhcCCceeEEeccceeeeccchhe----------------------------------------------
Confidence 9999999999999999999999999999987421
Q ss_pred CcEEEEEEeCCceEEeccCccccccccCCCCcEEEEEccCCcccceEEEEeeeecccCcCccccccCceeeccceEEEee
Q 040385 458 EELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSIS 537 (827)
Q Consensus 458 ~~l~~~e~~~~~~~~~~~d~~~~l~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~~~~~~ 537 (827)
T Consensus 263 -------------------------------------------------------------------------------- 262 (415)
T COG5533 263 -------------------------------------------------------------------------------- 262 (415)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCHHHHHHHHHHHhCCcccccccccCCCCCCCCcccCCCCCCCCCCCCCCCcccccccCccccCCCCcceEEecCC
Q 040385 538 RDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDES 617 (827)
Q Consensus 538 ~~~~~s~~~i~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 617 (827)
T Consensus 263 -------------------------------------------------------------------------------- 262 (415)
T COG5533 263 -------------------------------------------------------------------------------- 262 (415)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccCCcCCCcccccCCCCCceEEEEecChhhHhhhhhhhhhhhhhhccCCcccccCCCCCCCHHHHHHHhhcccccCC
Q 040385 618 NVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVP 697 (827)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~F~~~E~L~~ 697 (827)
.+.|.|||+.|+++|.|++
T Consensus 263 -------------------------------------------------------------~~~l~eC~~~f~~~e~L~g 281 (415)
T COG5533 263 -------------------------------------------------------------QLGLQECIDRFYEEEKLEG 281 (415)
T ss_pred -------------------------------------------------------------eecHHHHHHHhhhHHhhcC
Confidence 1248999999999999999
Q ss_pred CCCCCCccCcccceeEEEEEeeecCCeEEEEEeeeeecccccceeeeeE----eccccccccccccccCCCCccceEEEE
Q 040385 698 EDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFV----NFPIHDFNLTKYVANKNSSRRQLYELY 773 (827)
Q Consensus 698 ~d~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~Ki~~~V----~fPl~~Ldl~~~~~~~~~~~~~~Y~L~ 773 (827)
+|.|.|++|++++.++|++.|.++|++|||||+||...-..+.||+++- +||.+ ....+-....-.-.+.+|+|+
T Consensus 282 ~d~W~CpkC~~k~ss~K~~~I~~lP~~LII~i~RF~i~V~~~~kiD~p~gw~~~~~~e-~~v~~~f~~~~~~~P~~Y~L~ 360 (415)
T COG5533 282 KDAWRCPKCGRKESSRKRMEILVLPDVLIIHISRFHISVMGRKKIDTPQGWKNTASVE-VNVTLLFNNGIGYIPRKYSLL 360 (415)
T ss_pred cccccCchhcccccchheEEEEecCceEEEEeeeeeEEeecccccCCCcchhccCCce-ecccccccCCCCCCccceeEE
Confidence 9999999999999999999999999999999999996555566666543 33321 111111112122366899999
Q ss_pred EEEEeecCCCcceEEEEEEeCCCCCEEEEeCCcceecCc-ccccCCCeEEEEeeC
Q 040385 774 ALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINE-DDVKSAAAYVLFYRR 827 (827)
Q Consensus 774 aVi~H~G~~~~GHY~a~~k~~~~~~W~~fnD~~V~~~~~-~~v~~~~aYiLfY~R 827 (827)
||++|.|++.+|||+++++. ++.|+.|||+.|++++. -+....+||||||+|
T Consensus 361 gv~Ch~G~L~gGHY~s~v~~--~~~W~~~dDs~vr~~~~~t~~~~pSsYilFY~r 413 (415)
T COG5533 361 GVVCHNGTLNGGHYFSEVKR--SGTWNVYDDSQVRKGSRTTSGSHPSSYILFYTR 413 (415)
T ss_pred EEEeecceecCceeEEeeee--cCceEEechhheeeccceecccCCcceEEEEEe
Confidence 99999999999999999994 79999999999999974 345567899999997
No 5
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.9e-53 Score=454.40 Aligned_cols=143 Identities=36% Similarity=0.672 Sum_probs=131.0
Q ss_pred CCHHHHHHHhhcccccCCCCCCCCccCcccceeEEEEEeeecCCeEEEEEeeeeeccc-ccceeeeeEeccccccccccc
Q 040385 680 LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRS-MKHKLETFVNFPIHDFNLTKY 758 (827)
Q Consensus 680 ~sL~dCL~~F~~~E~L~~~d~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~-~~~Ki~~~V~fPl~~Ldl~~~ 758 (827)
++|++||+.|+++|.|++++.|.|++|++ |+|+..|.++|++|+||||||.++.. ...|+++.|.|| +.|||++|
T Consensus 111 ~sL~~~L~~~~~~E~l~~~~~~~C~~C~~---a~k~~~i~~~P~~Lii~LkRF~~~~~~~~~Ki~~~v~fP-~~Ldl~~~ 186 (279)
T cd02667 111 CSIESCLKQFTEVEILEGNNKFACENCTK---AKKQYLISKLPPVLVIHLKRFQQPRSANLRKVSRHVSFP-EILDLAPF 186 (279)
T ss_pred CCHHHHHHhhcCeeEecCCCcccCCccCc---eeeEeEhhhCCCeEEEEEeccccCcccCceecCceEeCC-Cccchhhc
Confidence 38999999999999999999999999988 99999999999999999999999854 678999999999 79999999
Q ss_pred cccC----CCCccceEEEEEEEEeecCCCcceEEEEEEeCC---------------------CCCEEEEeCCcceecCcc
Q 040385 759 VANK----NSSRRQLYELYALTNHYGGMGSGHYTAHIKLLD---------------------ENRWYNFDDSHISPINED 813 (827)
Q Consensus 759 ~~~~----~~~~~~~Y~L~aVi~H~G~~~~GHY~a~~k~~~---------------------~~~W~~fnD~~V~~~~~~ 813 (827)
+..+ .......|+|+|||+|.|+..+|||+||+|... ++.||+|||+.|++++.+
T Consensus 187 ~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~GHY~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~dD~~V~~v~~~ 266 (279)
T cd02667 187 CDPKCNSSEDKSSVLYRLYGVVEHSGTMRSGHYVAYVKVRPPQQRLSDLTKSKPAADEAGPGSGQWYYISDSDVREVSLE 266 (279)
T ss_pred cCccccccccCCCceEEEEEEEEEeCCCCCCEeEEEEEcCccccccccccccccccccCCCCCCcEEEEECCccEECCHH
Confidence 9762 122568999999999999889999999999743 789999999999999999
Q ss_pred cccCCCeEEEEee
Q 040385 814 DVKSAAAYVLFYR 826 (827)
Q Consensus 814 ~v~~~~aYiLfY~ 826 (827)
+|.+.+|||||||
T Consensus 267 ~v~~~~aYiLfYe 279 (279)
T cd02667 267 EVLKSEAYLLFYE 279 (279)
T ss_pred HhccCCcEEEEeC
Confidence 9999999999996
No 6
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.9e-53 Score=459.22 Aligned_cols=142 Identities=37% Similarity=0.693 Sum_probs=129.1
Q ss_pred CHHHHHHHhhcccccCCCCCCCCccCcccceeEEEEEeeecCCeEEEEEeeeeeccc--ccceeeeeEeccccccccccc
Q 040385 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRS--MKHKLETFVNFPIHDFNLTKY 758 (827)
Q Consensus 681 sL~dCL~~F~~~E~L~~~d~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~--~~~Ki~~~V~fPl~~Ldl~~~ 758 (827)
+|++||+.|+++|.|.++++|+|++|++++.|+|++.|.++|+||+||||||.++.. ...|+.+.|.|| ..|+|.++
T Consensus 148 sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp-~~L~~~~~ 226 (300)
T cd02663 148 SITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFP-LELRLFNT 226 (300)
T ss_pred CHHHHHHHhhcccccCCCCcEECCCCCCceeEEEEEEeccCCceeEEEEEeEEeecccCCceecCceEecC-cEEecccc
Confidence 689999999999999999999999999999999999999999999999999999854 368999999999 58999887
Q ss_pred cccCCCCccceEEEEEEEEeec-CCCcceEEEEEEeCCCCCEEEEeCCcceecCccccc--------CCCeEEEEee
Q 040385 759 VANKNSSRRQLYELYALTNHYG-GMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVK--------SAAAYVLFYR 826 (827)
Q Consensus 759 ~~~~~~~~~~~Y~L~aVi~H~G-~~~~GHY~a~~k~~~~~~W~~fnD~~V~~~~~~~v~--------~~~aYiLfY~ 826 (827)
...... ....|+|+|||+|.| ++++|||+||+|+ +++||+|||+.|++++.++|. +.+||||||+
T Consensus 227 ~~~~~~-~~~~Y~L~~vi~H~G~~~~~GHY~a~~k~--~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~~aYiLfY~ 300 (300)
T cd02663 227 TDDAEN-PDRLYELVAVVVHIGGGPNHGHYVSIVKS--HGGWLLFDDETVEKIDENAVEEFFGDSPNQATAYVLFYQ 300 (300)
T ss_pred ccccCC-CCeEEEEEEEEEEecCCCCCCceEEEEEC--CCcEEEEcCCceEEcCHHHHHHhcCCCCCCCceEEEEeC
Confidence 543332 567999999999999 5999999999996 899999999999999998885 6889999996
No 7
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.6e-52 Score=456.41 Aligned_cols=137 Identities=33% Similarity=0.632 Sum_probs=124.2
Q ss_pred CCHHHHHHHhhcccccCCCCCCCCccCcccceeEEEEEeeecCCeEEEEEeeeeecc------cccceeeeeEecccccc
Q 040385 680 LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSR------SMKHKLETFVNFPIHDF 753 (827)
Q Consensus 680 ~sL~dCL~~F~~~E~L~~~d~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~------~~~~Ki~~~V~fPl~~L 753 (827)
.+|++||+.|+++|.|.+++.|+|++|+.++.|+|+..|.++|+||+||||||.++. +...|+++.|.||+ .|
T Consensus 180 ~tL~~~L~~f~~~E~l~g~n~y~C~~C~~~~~a~k~~~~~~~P~vL~i~LkRF~~~~~~~~~~~~~~Ki~~~v~fp~-~L 258 (332)
T cd02671 180 KTLKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKLPEVITIHLKCFAANGSEFDCYGGLSKVNTPLLTPL-KL 258 (332)
T ss_pred CCHHHHHHHhCCcceecCCCCeeCCCCCCceeEEEEEEEecCCCEEEEEeeeeccccccccccCCceecCccccCcc-cc
Confidence 489999999999999999999999999999999999999999999999999999864 34689999999995 89
Q ss_pred ccccccccCCCCccceEEEEEEEEeec-CCCcceEEEEEEeCCCCCEEEEeCCcceecCccccc---------CCCeEEE
Q 040385 754 NLTKYVANKNSSRRQLYELYALTNHYG-GMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVK---------SAAAYVL 823 (827)
Q Consensus 754 dl~~~~~~~~~~~~~~Y~L~aVi~H~G-~~~~GHY~a~~k~~~~~~W~~fnD~~V~~~~~~~v~---------~~~aYiL 823 (827)
||.++.... ....|+|+|||+|.| ++++|||+||+| ||+|||+.|++++++++. +.+||||
T Consensus 259 ~~~~~~~~~---~~~~Y~L~~VI~H~G~~~~~GHY~a~vr------W~~fdD~~V~~~~~~~~~~~~~~~~~~~~~aYiL 329 (332)
T cd02671 259 SLEEWSTKP---KNDVYRLFAVVMHSGATISSGHYTAYVR------WLLFDDSEVKVTEEKDFLEALSPNTSSTSTPYLL 329 (332)
T ss_pred ccccccCCC---CCCeEEEEEEEEEcCCCCCCCeEEEEEE------EEEEcCcceEEccHHHHHhhcCCCCCCCCceEEE
Confidence 998876543 458999999999999 689999999999 999999999999876664 4689999
Q ss_pred Eee
Q 040385 824 FYR 826 (827)
Q Consensus 824 fY~ 826 (827)
||+
T Consensus 330 fY~ 332 (332)
T cd02671 330 FYK 332 (332)
T ss_pred EEC
Confidence 996
No 8
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.8e-52 Score=455.84 Aligned_cols=144 Identities=31% Similarity=0.570 Sum_probs=127.7
Q ss_pred HHHHHHHhhcccccCCCCCCCCccCcccceeEEEEEeeecCCeEEEEEeeeeecc--cccceeeeeEecccccccccccc
Q 040385 682 LYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSR--SMKHKLETFVNFPIHDFNLTKYV 759 (827)
Q Consensus 682 L~dCL~~F~~~E~L~~~d~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~--~~~~Ki~~~V~fPl~~Ldl~~~~ 759 (827)
|++||+.|+.+|.|++++.|+|++|++++.|+|+..|.++|+||+||||||.|+. +.+.|+.+.|.|| ..|||..++
T Consensus 136 l~~~l~~~~~~E~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp-~~ldl~~~~ 214 (327)
T cd02664 136 VQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSIN-EVLSLPVRV 214 (327)
T ss_pred HHHHHHHhcCeeEccCCCceeCCccCCccceeEEEEcccCChhhEEEeeeeEEccccCcceecCceEecC-CEEecCccc
Confidence 5688999999999999999999999999999999999999999999999999875 3468999999999 689999987
Q ss_pred ccC------------------CCCccceEEEEEEEEeec-CCCcceEEEEEEeCC--------------------CCCEE
Q 040385 760 ANK------------------NSSRRQLYELYALTNHYG-GMGSGHYTAHIKLLD--------------------ENRWY 800 (827)
Q Consensus 760 ~~~------------------~~~~~~~Y~L~aVi~H~G-~~~~GHY~a~~k~~~--------------------~~~W~ 800 (827)
... .......|+|+|||+|.| ++++|||+||+|... ++.||
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~Vi~H~G~~~~~GHY~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 294 (327)
T cd02664 215 ESKSSESPLEKKEEESGDDGELVTRQVHYRLYAVVVHSGYSSESGHYFTYARDQTDADSTGQECPEPKDAEENDESKNWY 294 (327)
T ss_pred cccccccccccccccccccccccCCCceEEEEEEEEEccCCCCCcceEEEEecCCccccccccccccccccccCCCCCEE
Confidence 421 112457899999999999 689999999999743 47999
Q ss_pred EEeCCcceecCcccccC-------CCeEEEEee
Q 040385 801 NFDDSHISPINEDDVKS-------AAAYVLFYR 826 (827)
Q Consensus 801 ~fnD~~V~~~~~~~v~~-------~~aYiLfY~ 826 (827)
+|||+.|++++.++|.+ .+||||||+
T Consensus 295 ~fnD~~V~~~~~~~v~~~~~~~~~~~aYlLfY~ 327 (327)
T cd02664 295 LFNDSRVTFSSFESVQNVTSRFPKDTPYILFYE 327 (327)
T ss_pred EEeCCceEECCHHHHHHhhCCCCCCCEEEEEeC
Confidence 99999999999999875 899999996
No 9
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.3e-51 Score=451.61 Aligned_cols=144 Identities=33% Similarity=0.697 Sum_probs=130.7
Q ss_pred CHHHHHHHhhcccccCCCCCCCCccCcccceeEEEEEeeecCCeEEEEEeeeeecc--cccceeeeeEeccccccccccc
Q 040385 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSR--SMKHKLETFVNFPIHDFNLTKY 758 (827)
Q Consensus 681 sL~dCL~~F~~~E~L~~~d~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~--~~~~Ki~~~V~fPl~~Ldl~~~ 758 (827)
+|++||+.|+.+|.|++++.|+|++|++++.|+|+..|.++|+||+|||+||.|+. +...|+++.|.|| +.|||++|
T Consensus 157 sl~~~L~~~~~~e~l~g~~~~~C~~C~~~~~a~k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~fp-~~Ldl~~~ 235 (324)
T cd02668 157 TLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFP-EILDMGEY 235 (324)
T ss_pred CHHHHHHHhhCceecCCCccccCCCCCceeeeEEEEEecCCCCeEEEEEEcceeecccCcceeCCcEEECC-CeEechhh
Confidence 68999999999999999999999999999999999999999999999999999974 4578999999999 79999999
Q ss_pred cccCCCCccceEEEEEEEEeec-CCCcceEEEEEEeCCCCCEEEEeCCcceecCcccc---------------------c
Q 040385 759 VANKNSSRRQLYELYALTNHYG-GMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDV---------------------K 816 (827)
Q Consensus 759 ~~~~~~~~~~~Y~L~aVi~H~G-~~~~GHY~a~~k~~~~~~W~~fnD~~V~~~~~~~v---------------------~ 816 (827)
+..... ....|+|+|||+|.| ++++|||+||+|+..+++||+|||+.|++++.+.+ .
T Consensus 236 ~~~~~~-~~~~Y~L~~vI~H~G~~~~~GHY~~~~k~~~~~~W~~fdD~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (324)
T cd02668 236 LAESDE-GSYVYELSGVLIHQGVSAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKLGNSEDPAKPRKSEIKKGTHS 314 (324)
T ss_pred cccccC-CCcEEEEEEEEEEcCCCCCCEeeEEEEECCCCCcEEEEECCceEEcCHHHhhcccccccccccccccCCCccc
Confidence 876543 668899999999999 68999999999986678999999999999976544 3
Q ss_pred CCCeEEEEee
Q 040385 817 SAAAYVLFYR 826 (827)
Q Consensus 817 ~~~aYiLfY~ 826 (827)
+.+|||||||
T Consensus 315 ~~~~y~l~y~ 324 (324)
T cd02668 315 SRTAYMLVYK 324 (324)
T ss_pred cCceEEEEeC
Confidence 6789999997
No 10
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.1e-50 Score=441.97 Aligned_cols=145 Identities=35% Similarity=0.712 Sum_probs=132.7
Q ss_pred CCCHHHHHHHhhcccccCCCCCCCCccCcccceeEEEEEeeecCCeEEEEEeeeeecc-cccceeeeeEecccccccccc
Q 040385 679 PLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSR-SMKHKLETFVNFPIHDFNLTK 757 (827)
Q Consensus 679 ~~sL~dCL~~F~~~E~L~~~d~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~-~~~~Ki~~~V~fPl~~Ldl~~ 757 (827)
..+|++||+.|+++|.+++.+ |+|++|+.++.+.|++.|.++|++|+||||||.++. +...|+.+.|.|| ..|||++
T Consensus 175 ~~sl~~~L~~~~~~e~~~~~~-~~C~~C~~~~~~~~~~~i~~lP~~Lii~lkRf~~~~~~~~~K~~~~v~fp-~~Ldl~~ 252 (328)
T cd02660 175 TPTLSDCLDRFTRPEKLGDFA-YKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSLNKTSRKIDTYVQFP-LELNMTP 252 (328)
T ss_pred CCCHHHHHHHhcCccccCCCC-ccCCCCCCccceEEEEEecCCCceeEEEEEeEEecCCCCCcCCCcEEeCC-CEechhh
Confidence 458999999999999998877 999999999999999999999999999999999986 5678999999999 5899999
Q ss_pred cccc--------CCCCccceEEEEEEEEeecCCCcceEEEEEEeCCCCCEEEEeCCcceecCcccccCCCeEEEEee
Q 040385 758 YVAN--------KNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYR 826 (827)
Q Consensus 758 ~~~~--------~~~~~~~~Y~L~aVi~H~G~~~~GHY~a~~k~~~~~~W~~fnD~~V~~~~~~~v~~~~aYiLfY~ 826 (827)
|+.. ........|+|+|||+|.|+.++|||+||+|. .+++||+|||+.|+++++++|...+||||||.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~~~~~~-~~~~W~~~nD~~V~~~~~~~v~~~~ayil~Y~ 328 (328)
T cd02660 253 YTSSSIGDTQDSNSLDPDYTYDLFAVVVHKGTLDTGHYTAYCRQ-GDGQWFKFDDAMITRVSEEEVLKSQAYLLFYH 328 (328)
T ss_pred hcccccccccccccCCCCceEEEEEEEEeeccCCCCcEEEEEEC-CCCcEEEEECCeeEECCHHHhcCCCcEEEEeC
Confidence 9885 12236689999999999999999999999997 44899999999999999999999999999994
No 11
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-51 Score=472.55 Aligned_cols=293 Identities=41% Similarity=0.677 Sum_probs=247.9
Q ss_pred CCCCccCcccCCCccchhhHHHhhhCcHHHHHHHHH-hhhhhhccCCC--------------------------------
Q 040385 271 ASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNP-------------------------------- 317 (827)
Q Consensus 271 ~~~g~~GL~NlGNTCYmNSvLQcL~~~~~l~~~~l~-~~~~~~~~~n~-------------------------------- 317 (827)
...|.+||.|+|||||||++||||+.|+.|+++|+. .|.+.++.++.
T Consensus 297 ~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~~~~~s~~P~~f~ 376 (653)
T KOG1868|consen 297 DVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHGHGQFSVLPRRFI 376 (653)
T ss_pred cccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccCCCceecCcHHHH
Confidence 357899999999999999999999999999977764 45555552221
Q ss_pred ---------------CcHHHHHHHHHHHHHhhhccccCCC-ceecc-----CCCCCCcHHHHHHHHHhhhccCCCceeec
Q 040385 318 ---------------LGMVELLAFLLDGLHEDLNRVKHKP-YIKSK-----DADGRPDEEVADEYWANHIARNDSIIVDV 376 (827)
Q Consensus 318 ---------------~~~~Efl~~lLd~L~e~l~~~~~~~-~~~~~-----~~~~~~~~~~a~e~~~~~~~~~~s~I~~l 376 (827)
...+||+.+++|+||++++....++ ..... ..........+...|..+....++.|.++
T Consensus 377 ~~~~~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~~~d~~i~~l 456 (653)
T KOG1868|consen 377 RVLKRYSPNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLEEEDSKIGDL 456 (653)
T ss_pred HHHhhcccccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhccccchHHHHH
Confidence 1222999999999999999976532 11111 11123345566778888888888889999
Q ss_pred ccceEeeeEecCCCCCeeeeecCceeEEEeCCCCccceEEEEEEcCCCCCcCeEEEEEecCCCcHHHHHHHHHhhcCCCC
Q 040385 377 CQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQ 456 (827)
Q Consensus 377 F~G~~~s~l~C~~C~~~s~~~e~F~~LsL~lp~~~~~~~~~~~~~~~~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~ 456 (827)
|.||+++.++|..|++.|.+|++|++|+||||.....
T Consensus 457 f~gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~------------------------------------------- 493 (653)
T KOG1868|consen 457 FVGQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFA------------------------------------------- 493 (653)
T ss_pred HHHHHHhheehhhcCCcceeeecceeeEEeccccccc-------------------------------------------
Confidence 9999999999999999999999999999999965310
Q ss_pred CCcEEEEEEeCCceEEeccCccccccccCCCCcEEEEEccCCcccceEEEEeeeecccCcCccccccCceeeccceEEEe
Q 040385 457 SEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSI 536 (827)
Q Consensus 457 ~~~l~~~e~~~~~~~~~~~d~~~~l~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~~~~~ 536 (827)
T Consensus 494 -------------------------------------------------------------------------------- 493 (653)
T KOG1868|consen 494 -------------------------------------------------------------------------------- 493 (653)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCCHHHHHHHHHHHhCCcccccccccCCCCCCCCcccCCCCCCCCCCCCCCCcccccccCccccCCCCcceEEecC
Q 040385 537 SRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDE 616 (827)
Q Consensus 537 ~~~~~~s~~~i~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 616 (827)
T Consensus 494 -------------------------------------------------------------------------------- 493 (653)
T KOG1868|consen 494 -------------------------------------------------------------------------------- 493 (653)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccCCcCCCcccccCCCCCceEEEEecChhhHhhhhhhhhhhhhhhccCCcccccCCCCCCCHHHHHHHhhcccccC
Q 040385 617 SNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLV 696 (827)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~F~~~E~L~ 696 (827)
...++|++|+..|++.|+|+
T Consensus 494 ------------------------------------------------------------~~~~~L~~C~~~ft~~ekle 513 (653)
T KOG1868|consen 494 ------------------------------------------------------------GGKVSLEDCLSLFTKEEKLE 513 (653)
T ss_pred ------------------------------------------------------------ccccchHhhhccccchhhcc
Confidence 01247999999999999999
Q ss_pred CCCCCCCccCcccceeE--EEEEeeecCCeEEEEEeeeeecccccceeeeeEeccccccccccccccCCCCccceEEEEE
Q 040385 697 PEDMWYCPQCKERRQAS--KKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYA 774 (827)
Q Consensus 697 ~~d~~~C~~C~~~~~a~--k~~~i~~lP~vLiihLkRF~~~~~~~~Ki~~~V~fPl~~Ldl~~~~~~~~~~~~~~Y~L~a 774 (827)
++++|.|++|+....++ |++.|++||++|||||+||.++++...|....|+||+..+++.++.....+ ....|+|||
T Consensus 514 ~~~~w~Cp~c~~~~~~~~lK~~~i~~lp~iLiihL~Rf~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~~~-~~~~Y~L~a 592 (653)
T KOG1868|consen 514 GDEAWLCPRCKHKESSKTLKKLTILRLPKILIIHLKRFSSDGNSFNKLSTGVDFPLREADLSPRFAEKGN-NPKSYRLYA 592 (653)
T ss_pred cccccCCccccCcccccccceeeeecCCHHHHHHHHHhccCcccccccceeeccchHhhhhchhccccCC-CccceeeEE
Confidence 99999999999999886 999999999999999999999988889999999999988999886665554 556699999
Q ss_pred EEEeecCCCcceEEEEEEeCCCCCEEEEeCCcceecCcccccCCCeEEEEeeC
Q 040385 775 LTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827 (827)
Q Consensus 775 Vi~H~G~~~~GHY~a~~k~~~~~~W~~fnD~~V~~~~~~~v~~~~aYiLfY~R 827 (827)
|++|.|++.+|||||||+....+.|+.|||+.|+.+++.++.+++||||||+|
T Consensus 593 Vv~H~Gtl~sGHYta~~~~~~~~~W~~fdDs~Vs~~~~~~~~~s~aYIlFY~~ 645 (653)
T KOG1868|consen 593 VVNHSGTLNSGHYTAYVYKNEKQRWFTFDDSEVSPISETDVGSSSAYILFYER 645 (653)
T ss_pred EEeccCcccCCceEEEEeecCCCceEEecCeeeeccccccccCCCceEEEeec
Confidence 99999999999999999876789999999999999999999999999999987
No 12
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.2e-49 Score=449.65 Aligned_cols=136 Identities=25% Similarity=0.443 Sum_probs=121.8
Q ss_pred CCCHHHHHHHhhcccccCCCCCCCCccCcccceeEEEEEeeecCCeEEEEEeeeeecccccceeeeeEeccccccccccc
Q 040385 679 PLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKY 758 (827)
Q Consensus 679 ~~sL~dCL~~F~~~E~L~~~d~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~Ki~~~V~fPl~~Ldl~~~ 758 (827)
.++|++||+.| .|+.|...+.|+|++.|++||+|||||||||.++.....|+.+.|.||++.|||++|
T Consensus 302 ~~~l~e~L~ky------------~~~~c~~~~~a~k~~~I~~LP~vLiihLKRF~~~~~~~~K~~t~V~FP~~~LDm~~y 369 (440)
T cd02669 302 QVPLKQLLKKY------------DGKTETELKDSLKRYLISRLPKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLSDY 369 (440)
T ss_pred cccHHHHHHhc------------CCccceecccceEEEEEeeCCcEEEEEEecccCCCCccccCCCEEECCCCccchhhh
Confidence 35899999765 567788888899999999999999999999999877789999999999767999999
Q ss_pred cccCC--CCccceEEEEEEEEeecCC-CcceEEEEEEeCCCCCEEEEeCCcceecCcccccCCCeEEEEee
Q 040385 759 VANKN--SSRRQLYELYALTNHYGGM-GSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYR 826 (827)
Q Consensus 759 ~~~~~--~~~~~~Y~L~aVi~H~G~~-~~GHY~a~~k~~~~~~W~~fnD~~V~~~~~~~v~~~~aYiLfY~ 826 (827)
+.... ...+..|+|+|||+|.|+. ++|||+||+|+..+|+||+|||+.|+++++++|..++||||||+
T Consensus 370 ~~~~~~~~~~~~~Y~L~avI~H~G~~~~sGHY~a~v~~~~~~~W~~fdD~~V~~v~~~~v~~~eaYll~Y~ 440 (440)
T cd02669 370 VHFDKPSLNLSTKYNLVANIVHEGTPQEDGTWRVQLRHKSTNKWFEIQDLNVKEVLPQLIFLSESYIQIWE 440 (440)
T ss_pred hCccccccCCCceEEEEEEEEEeccCCCCeeEEEEEEcCCCCeEEEEECCeeeEcCHHHhccCCceEEEeC
Confidence 96432 2256899999999999987 99999999998668999999999999999999999999999996
No 13
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.5e-48 Score=431.27 Aligned_cols=146 Identities=32% Similarity=0.672 Sum_probs=131.6
Q ss_pred CHHHHHHHhhcccccCCCCCCCCccCcccceeEEEEEeeecCCeEEEEEeeeeecc--cccceeeeeEeccccccccccc
Q 040385 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSR--SMKHKLETFVNFPIHDFNLTKY 758 (827)
Q Consensus 681 sL~dCL~~F~~~E~L~~~d~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~--~~~~Ki~~~V~fPl~~Ldl~~~ 758 (827)
+|++||+.|+.+|.+++++.|.|++|++++.+.++..|.++|++|+|||+||.++. ....|+++.|.|| ..|||++|
T Consensus 152 ~l~~~l~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~~~v~fp-~~Ldl~~~ 230 (334)
T cd02659 152 NLEESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFP-LELDMEPY 230 (334)
T ss_pred CHHHHHHHhcCeeEecCCccEecCcCCCcccEEEEEEeecCCCEEEEEeeeeEEccccCcceeCCceEeCC-ceecCccc
Confidence 58899999999999999999999999999999999999999999999999999863 4578999999999 68999999
Q ss_pred cccCC----------CCccceEEEEEEEEeecCCCcceEEEEEEeCCCCCEEEEeCCcceecCccccc------------
Q 040385 759 VANKN----------SSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVK------------ 816 (827)
Q Consensus 759 ~~~~~----------~~~~~~Y~L~aVi~H~G~~~~GHY~a~~k~~~~~~W~~fnD~~V~~~~~~~v~------------ 816 (827)
+.... ......|+|+|||+|.|+..+|||+||+|...+++||.|||+.|++++.++|.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~~vk~~~~~~W~~~nD~~V~~i~~~~v~~~~~g~~~~~~~ 310 (334)
T cd02659 231 TEKGLAKKEGDSEKKDSESYIYELHGVLVHSGDAHGGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAEEECFGGEETQKT 310 (334)
T ss_pred cccccccccccccccCCCCeeEEEEEEEEecCCCCCCCeEEEEECCCCCceEEEeCcccEECCHHHHHHHcCCCcccccc
Confidence 87542 23568899999999999999999999999866899999999999999988883
Q ss_pred ----------CCCeEEEEeeC
Q 040385 817 ----------SAAAYVLFYRR 827 (827)
Q Consensus 817 ----------~~~aYiLfY~R 827 (827)
+.+||||||+|
T Consensus 311 ~~~~~~~~~~~~~ay~l~Y~~ 331 (334)
T cd02659 311 YDSGPRAFKRTTNAYMLFYER 331 (334)
T ss_pred ccccccccccccceEEEEEEE
Confidence 35799999996
No 14
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.1e-48 Score=406.67 Aligned_cols=122 Identities=33% Similarity=0.673 Sum_probs=112.0
Q ss_pred CHHHHHHHhhcccccCCCCCCCCccCcccceeEEEEEeeecCCeEEEEEeeeeecc-cccceeeeeEecccccccccccc
Q 040385 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSR-SMKHKLETFVNFPIHDFNLTKYV 759 (827)
Q Consensus 681 sL~dCL~~F~~~E~L~~~d~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~-~~~~Ki~~~V~fPl~~Ldl~~~~ 759 (827)
+|++||+.|+.+|.+++ |.|++| +..|.++|+||+||||||.++. +...|+++.|.|| +.|
T Consensus 97 sl~~~L~~~~~~E~l~~---~~C~~C--------~~~i~~lP~vLii~LkRF~~~~~~~~~K~~~~v~fp-~~l------ 158 (240)
T cd02662 97 TLEHCLDDFLSTEIIDD---YKCDRC--------QTVIVRLPQILCIHLSRSVFDGRGTSTKNSCKVSFP-ERL------ 158 (240)
T ss_pred CHHHHHHHhcCcccccC---cCCCCC--------eEEeecCCcEEEEEEEEEEEcCCCceeeeccEEECC-Ccc------
Confidence 79999999999999964 899999 6789999999999999999987 7788999999999 466
Q ss_pred ccCCCCccceEEEEEEEEeecCCCcceEEEEEEeC--------------------CCCCEEEEeCCcceecCcccc-cCC
Q 040385 760 ANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLL--------------------DENRWYNFDDSHISPINEDDV-KSA 818 (827)
Q Consensus 760 ~~~~~~~~~~Y~L~aVi~H~G~~~~GHY~a~~k~~--------------------~~~~W~~fnD~~V~~~~~~~v-~~~ 818 (827)
....|+|+|||+|.|+..+|||+||+|.+ ..+.||+|||+.|+++++++| .++
T Consensus 159 ------~~~~Y~L~avi~H~G~~~~GHY~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~ 232 (240)
T cd02662 159 ------PKVLYRLRAVVVHYGSHSSGHYVCYRRKPLFSKDKEPGSFVRMREGPSSTSHPWWRISDTTVKEVSESEVLEQK 232 (240)
T ss_pred ------CCceEEEEEEEEEeccCCCceEEEEEeCCCcccccccccccccccccCccCCCEEEEechheEEeCHHHHhhCC
Confidence 34789999999999988999999999985 348999999999999999999 899
Q ss_pred CeEEEEee
Q 040385 819 AAYVLFYR 826 (827)
Q Consensus 819 ~aYiLfY~ 826 (827)
+||||||+
T Consensus 233 ~aY~LfYe 240 (240)
T cd02662 233 SAYMLFYE 240 (240)
T ss_pred CEEEEEeC
Confidence 99999996
No 15
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.3e-48 Score=424.49 Aligned_cols=135 Identities=31% Similarity=0.533 Sum_probs=121.2
Q ss_pred CHHHHHHHhhcccccCCCCCCCCccCcccceeEEEEEeeecCCeEEEEEeeeeeccc--ccceeeeeEeccccccccccc
Q 040385 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRS--MKHKLETFVNFPIHDFNLTKY 758 (827)
Q Consensus 681 sL~dCL~~F~~~E~L~~~d~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~--~~~Ki~~~V~fPl~~Ldl~~~ 758 (827)
+|++||+.++.+|.. ..|+.|+....++|+..|.++|++|+||||||.++.. ...|+.+.|.|| ..|||++|
T Consensus 161 ~l~~~L~~~~~~~~~-----~~~~~~~~~~~~~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fP-~~Ldl~~~ 234 (305)
T cd02657 161 YLQDGLKKGLEEEIE-----KHSPTLGRDAIYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKFP-FELDLYEL 234 (305)
T ss_pred cHHHHHHHhhhhhhh-----hcCcccCCCceEEEEEEeccCCcEEEEEEECCccccccCceeecCcEEECC-ceEecccc
Confidence 689999999987754 4799999999999999999999999999999998753 467999999999 68999999
Q ss_pred cccCCCCccceEEEEEEEEeec-CCCcceEEEEEEeCCCCCEEEEeCCcceecCcccccC-------CCeEEEEee
Q 040385 759 VANKNSSRRQLYELYALTNHYG-GMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKS-------AAAYVLFYR 826 (827)
Q Consensus 759 ~~~~~~~~~~~Y~L~aVi~H~G-~~~~GHY~a~~k~~~~~~W~~fnD~~V~~~~~~~v~~-------~~aYiLfY~ 826 (827)
+. .+..|+|+|||+|.| ++.+|||+||+|...+++||.|||+.|+++++++|.. .+|||||||
T Consensus 235 ~~-----~~~~Y~L~~vI~H~G~~~~~GHY~~~~~~~~~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~aYiL~Y~ 305 (305)
T cd02657 235 CT-----PSGYYELVAVITHQGRSADSGHYVAWVRRKNDGKWIKFDDDKVSEVTEEDILKLSGGGDWHIAYILLYK 305 (305)
T ss_pred cC-----CCCcEEEEEEEEecCCCCCCcEEEEEEEcCCCCeEEEEECCceEEeCHHHHHhhcCCCCCceEEEEEEC
Confidence 87 346899999999999 6999999999998555999999999999999999864 689999997
No 16
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.2e-47 Score=418.01 Aligned_cols=141 Identities=41% Similarity=0.706 Sum_probs=130.7
Q ss_pred CHHHHHHHhhcccccCCCCCCCCccCcccceeEEEEEeeecCCeEEEEEeeeeecccccceeeeeEeccccccccccccc
Q 040385 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760 (827)
Q Consensus 681 sL~dCL~~F~~~E~L~~~d~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~Ki~~~V~fPl~~Ldl~~~~~ 760 (827)
+|++||+.|+.+|.+++++.|+|++|++++.+.++..|.++|++|+|||+||.++ ...|+.+.|.|| +.|||.+|+.
T Consensus 163 ~l~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~iL~i~l~Rf~~~--~~~Ki~~~v~f~-~~L~l~~~~~ 239 (304)
T cd02661 163 SLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNF--RGGKINKQISFP-ETLDLSPYMS 239 (304)
T ss_pred cHHHHHHHhcCceeeCCCCCeeCCCCCCccceEEEEEEecCCcEEEEEEeccccC--CccccCCeEecC-Ceechhhccc
Confidence 5889999999999999999999999999999999999999999999999999987 567999999999 6899999998
Q ss_pred cCCCCccceEEEEEEEEeecC-CCcceEEEEEEeCCCCCEEEEeCCcceecCcccccCCCeEEEEee
Q 040385 761 NKNSSRRQLYELYALTNHYGG-MGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYR 826 (827)
Q Consensus 761 ~~~~~~~~~Y~L~aVi~H~G~-~~~GHY~a~~k~~~~~~W~~fnD~~V~~~~~~~v~~~~aYiLfY~ 826 (827)
.... ....|+|+|||+|.|. +++|||+||+|. .+++||+|||+.|++++.++|.+.+||||||-
T Consensus 240 ~~~~-~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~-~~~~W~~~nD~~V~~v~~~~v~~~~aYil~Y~ 304 (304)
T cd02661 240 QPND-GPLKYKLYAVLVHSGFSPHSGHYYCYVKS-SNGKWYNMDDSKVSPVSIETVLSQKAYILFYI 304 (304)
T ss_pred cCCC-CCceeeEEEEEEECCCCCCCcCCEEEEEC-CCCCEEEEeCCeeEECCHHHhcCCCcEEEEeC
Confidence 6543 6789999999999994 599999999997 67899999999999999999999999999993
No 17
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=9e-47 Score=413.08 Aligned_cols=131 Identities=33% Similarity=0.652 Sum_probs=118.7
Q ss_pred CCCHHHHHHHhhcccccCCCCCCCCccCcccceeEEEEEeeecCCeEEEEEeeeeec-ccccceeeeeEecccccccccc
Q 040385 679 PLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYS-RSMKHKLETFVNFPIHDFNLTK 757 (827)
Q Consensus 679 ~~sL~dCL~~F~~~E~L~~~d~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~-~~~~~Ki~~~V~fPl~~Ldl~~ 757 (827)
.++|++||+.|+.+|.++ ++|++|++++.|+|+..|.++|+||+|||+||.++ .+...|++..|.|| ..|
T Consensus 177 ~~sl~~~L~~~~~~e~i~----~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~Ki~~~v~~p-~~l---- 247 (311)
T cd02658 177 PVPLEDCLKAYFAPETIE----DFCSTCKEKTTATKTTGFKTFPDYLVINMKRFQLLENWVPKKLDVPIDVP-EEL---- 247 (311)
T ss_pred CCCHHHHHHHHcCccccc----ccccCCCCcccEEEEEEeecCCceEEEEeEEEEecCCCceEeeccccccC-CcC----
Confidence 458999999999999985 58999999999999999999999999999999995 56678999999999 455
Q ss_pred ccccCCCCccceEEEEEEEEeec-CCCcceEEEEEEeC--CCCCEEEEeCCcceecCcccccCCCeEEEEee
Q 040385 758 YVANKNSSRRQLYELYALTNHYG-GMGSGHYTAHIKLL--DENRWYNFDDSHISPINEDDVKSAAAYVLFYR 826 (827)
Q Consensus 758 ~~~~~~~~~~~~Y~L~aVi~H~G-~~~~GHY~a~~k~~--~~~~W~~fnD~~V~~~~~~~v~~~~aYiLfY~ 826 (827)
....|+|+|||+|.| ++++|||+||+|.. .+++||.|||+.|+++++.++.+..||||||+
T Consensus 248 --------~~~~Y~L~~vI~H~G~~~~~GHY~~~vk~~~~~~~~W~~fnD~~V~~~~~~~~~~~~~YilfY~ 311 (311)
T cd02658 248 --------GPGKYELIAFISHKGTSVHSGHYVAHIKKEIDGEGKWVLFNDEKVVASQDPPEMKKLGYIYFYQ 311 (311)
T ss_pred --------CCCcEEEEEEEEccCCCCCCcceEEEEeCCCCCCCCEEEecCceeEECCcccccCCcceEEEEC
Confidence 235799999999999 59999999999974 24899999999999999999999999999996
No 18
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.4e-45 Score=384.07 Aligned_cols=147 Identities=48% Similarity=0.916 Sum_probs=136.5
Q ss_pred CCHHHHHHHhhcccccCCCCCCCCccCcccceeEEEEEeeecCCeEEEEEeeeeecccccceeeeeEecccccccccccc
Q 040385 680 LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYV 759 (827)
Q Consensus 680 ~sL~dCL~~F~~~E~L~~~d~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~Ki~~~V~fPl~~Ldl~~~~ 759 (827)
.+|++||+.|+.+|.+++.+.+.|++|++++.+.++..|.++|++|+|||+||.++.+...|+++.|.||.+.|||++|+
T Consensus 84 ~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~~~~~~K~~~~v~~~~~~l~l~~~~ 163 (230)
T cd02674 84 VTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLTPYV 163 (230)
T ss_pred CCHHHHHHHhcCccccCCCCceeCCCCCCccceEEEEEEecCChhhEeEhhheecCCCCcccCCceEecccccccccccc
Confidence 38999999999999999999999999999999999999999999999999999998878899999999997789999987
Q ss_pred ccCCCCccceEEEEEEEEeecCCCcceEEEEEEeCCCCCEEEEeCCcceecCcccccCCCeEEEEee
Q 040385 760 ANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYR 826 (827)
Q Consensus 760 ~~~~~~~~~~Y~L~aVi~H~G~~~~GHY~a~~k~~~~~~W~~fnD~~V~~~~~~~v~~~~aYiLfY~ 826 (827)
.........+|+|+|||+|.|..++|||+||+|...+++||.|||+.|++++.+++...+||||||+
T Consensus 164 ~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~~~~~~~~~~W~~fnD~~V~~i~~~~~~~~~~YlL~Y~ 230 (230)
T cd02674 164 DTRSFTGPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE 230 (230)
T ss_pred CcccCCCCceEEEEEEEEeeCCCCCcEEEEEEECCCCCceEEEcCCeEEEcCHHHccCCCceEEEeC
Confidence 5444457789999999999997799999999998556999999999999999999999999999996
No 19
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.1e-41 Score=348.64 Aligned_cols=127 Identities=27% Similarity=0.412 Sum_probs=110.5
Q ss_pred CHHHHHHHhhcccccCCCCCCCCccCcccceeEEEEEeeecCCeEEEEEeeeeecccccceeeeeEeccccccccccccc
Q 040385 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760 (827)
Q Consensus 681 sL~dCL~~F~~~E~L~~~d~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~Ki~~~V~fPl~~Ldl~~~~~ 760 (827)
+|++||+.|+.+|.+++++.++ ..++.++..|.++|+||+||||||.++.....|+.+.|.||+ .|
T Consensus 94 ~L~e~L~~~~~ee~l~~~~~~~------~~~~~~~~~i~~lP~vL~i~LkRF~~~~~~~~Ki~~~v~FP~-~l------- 159 (228)
T cd02665 94 NLHECLEAAMFEGEVELLPSDH------SVKSGQERWFTELPPVLTFELSRFEFNQGRPEKIHDKLEFPQ-II------- 159 (228)
T ss_pred CHHHHHHHhhhhcccccccccc------hhhhhhhhhhhhCChhhEEEeEeeEEcCCccEECCEEEEeeC-cc-------
Confidence 6999999999999997754332 345677788999999999999999998877899999999995 55
Q ss_pred cCCCCccceEEEEEEEEeecCCCcceEEEEEEeCCCCCEEEEeCCcceecCccccc--------CCCeEEEEee
Q 040385 761 NKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVK--------SAAAYVLFYR 826 (827)
Q Consensus 761 ~~~~~~~~~Y~L~aVi~H~G~~~~GHY~a~~k~~~~~~W~~fnD~~V~~~~~~~v~--------~~~aYiLfY~ 826 (827)
....|+|+|||+|.|++++|||+||+|+..+++||+|||+.|+++++++|. ..+||||||.
T Consensus 160 -----~~~~Y~L~aVi~H~G~~~~GHY~~~i~~~~~~~W~~fdD~~V~~~~~~~v~~~~fGg~~~~~AYiLfYv 228 (228)
T cd02665 160 -----QQVPYELHAVLVHEGQANAGHYWAYIYKQSRQEWEKYNDISVTESSWEEVERDSFGGGRNPSAYCLMYI 228 (228)
T ss_pred -----CCceeEEEEEEEecCCCCCCEEEEEEEcCCCCEEEEEECCeeEEcCHHHHhhhccCCCCCCceEEEEEC
Confidence 235799999999999999999999999767899999999999999998886 3479999994
No 20
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.5e-40 Score=347.05 Aligned_cols=130 Identities=27% Similarity=0.464 Sum_probs=107.5
Q ss_pred CHHHHHHHhhcccccCCCCCCCCccCcccceeEEEEEeeecCCeEEEEEeeeeecccccceeeeeEeccccccccccccc
Q 040385 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVA 760 (827)
Q Consensus 681 sL~dCL~~F~~~E~L~~~d~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~Ki~~~V~fPl~~Ldl~~~~~ 760 (827)
+|++|++.|.+++.++ |.|++|+.. .|.|+..|.++|+||+||||||.+.. ++...+.. ..++|.+|+.
T Consensus 111 ~le~l~~~~~~~~~~e----~~C~~C~~~-~a~k~~~i~~~P~vL~i~lkRf~~~~----~~~~~~~~--~~~~~~~~~~ 179 (245)
T cd02673 111 IDELLISNFKTWSPIE----KDCSSCKCE-SAISSERIMTFPECLSINLKRYKLRI----ATSDYLKK--NEEIMKKYCG 179 (245)
T ss_pred hHHHHHHHhhcccccC----ccCCCCCCc-cceeechhhhCChhhEEeeEeeeecc----cccccccc--cccccccccC
Confidence 4678888888777653 799999975 89999999999999999999997643 22222332 3567777765
Q ss_pred cCCCCccceEEEEEEEEeec-CCCcceEEEEEEeCC-CCCEEEEeCCcceecCccccc---CCCeEEEEee
Q 040385 761 NKNSSRRQLYELYALTNHYG-GMGSGHYTAHIKLLD-ENRWYNFDDSHISPINEDDVK---SAAAYVLFYR 826 (827)
Q Consensus 761 ~~~~~~~~~Y~L~aVi~H~G-~~~~GHY~a~~k~~~-~~~W~~fnD~~V~~~~~~~v~---~~~aYiLfY~ 826 (827)
....|+|+|||+|.| ++++|||+||+|... +++||.|||+.|+++++++|. +++||||||+
T Consensus 180 -----~~~~Y~L~~VV~H~G~~~~~GHY~a~vk~~~~~~~Wy~fnD~~V~~v~~~~v~~~~~~~aYiLFY~ 245 (245)
T cd02673 180 -----TDAKYSLVAVICHLGESPYDGHYIAYTKELYNGSSWLYCSDDEIRPVSKNDVSTNARSSGYLIFYD 245 (245)
T ss_pred -----CCceEEEEEEEEECCCCCCCceEEEEEEcCCCCCeEEEeeCceeeEcCHHHHhhccCCceEEEEEC
Confidence 346799999999999 589999999999865 789999999999999999997 6799999996
No 21
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-40 Score=368.67 Aligned_cols=149 Identities=34% Similarity=0.591 Sum_probs=132.5
Q ss_pred CCCCHHHHHHHhhcccccCCCCCCCCccCccc---------------------------ceeEEEEEeeecCCeEEEEEe
Q 040385 678 EPLSLYTCLEAFLREEPLVPEDMWYCPQCKER---------------------------RQASKKLDLWRLPEVLVIHLK 730 (827)
Q Consensus 678 ~~~sL~dCL~~F~~~E~L~~~d~~~C~~C~~~---------------------------~~a~k~~~i~~lP~vLiihLk 730 (827)
.++|+++||..||+-|.|.++|+|.|+.|-+. ..|.|++.|-.+|+||+||||
T Consensus 676 ~p~Svq~CL~nFT~~E~Ls~~N~~~CEnCtk~~n~~~r~k~~~n~~~sk~s~~es~~~~t~akk~~li~~aPpVltihlK 755 (877)
T KOG1873|consen 676 EPCSVQRCLKNFTKVEILSGDNKWACENCTKNLNLQRREKRGLNEDNSKYSFNESEYRNTYAKKKVLINKAPPVLTIHLK 755 (877)
T ss_pred CCccHHHHHHhhhhhhhcccccchhhhhhhccccccchhhccCCCCcccccccchhhhhhhhheeeecccCCceeeehHh
Confidence 58999999999999999999999999999761 126889999999999999999
Q ss_pred eeeecc-cccceeeeeEeccccccccccccccCC----CCccceEEEEEEEEeecCCCcceEEEEEEeC-----------
Q 040385 731 RFSYSR-SMKHKLETFVNFPIHDFNLTKYVANKN----SSRRQLYELYALTNHYGGMGSGHYTAHIKLL----------- 794 (827)
Q Consensus 731 RF~~~~-~~~~Ki~~~V~fPl~~Ldl~~~~~~~~----~~~~~~Y~L~aVi~H~G~~~~GHY~a~~k~~----------- 794 (827)
||.... +...|++.+|+|+ +-+||.+|+.-.. ......|+|+|||.|.|+|.+||||||+|..
T Consensus 756 rf~q~~~~~~~k~~~h~~f~-E~~dL~~~~~~rc~~l~~~~s~~Yrl~gvvehsgtm~~ghyvayv~~~t~~~~~~~~~~ 834 (877)
T KOG1873|consen 756 RFFQDIRGRLSKLNKHVDFK-EFEDLLDYMDFRCSHLDEPSSFVYRLAGVVEHSGTMSYGHYVAYVRGGTFLDLSAPSNS 834 (877)
T ss_pred hhhhhhhchhhcccccchHH-HHHHHHHHhhhhccccCCcchhhhhhccceeccccccCCcchhhhhccchhhccCcccc
Confidence 999874 4478999999999 8999999987332 2245689999999999999999999999852
Q ss_pred ---------CCCCEEEEeCCcceecCcccccCCCeEEEEeeC
Q 040385 795 ---------DENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827 (827)
Q Consensus 795 ---------~~~~W~~fnD~~V~~~~~~~v~~~~aYiLfY~R 827 (827)
..|+||+..|+.|.+++.++|....||||||+|
T Consensus 835 ~~~~sd~~~~~~~Wy~iSDs~VrevS~d~vLkseAYlLFYER 876 (877)
T KOG1873|consen 835 KDFESDAGIPSGRWYYISDSIVREVSLDEVLKSEAYLLFYER 876 (877)
T ss_pred ccchhccCCCCcceEEecchheecccHHHHhhhhhhhhheec
Confidence 357999999999999999999999999999998
No 22
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.8e-38 Score=337.35 Aligned_cols=136 Identities=21% Similarity=0.311 Sum_probs=116.1
Q ss_pred CCHHHHHHHhhcccccCCCCCCCCccCcccceeEEEEEeeecCC----eEEEEEeeeeecc-------cccceeeeeEec
Q 040385 680 LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPE----VLVIHLKRFSYSR-------SMKHKLETFVNF 748 (827)
Q Consensus 680 ~sL~dCL~~F~~~E~L~~~d~~~C~~C~~~~~a~k~~~i~~lP~----vLiihLkRF~~~~-------~~~~Ki~~~V~f 748 (827)
++|.+||+.|+.+|.. +.|+|++|++++.|+|++.|+++|+ ||+||||||.+.. ....|+...|.|
T Consensus 117 ~sl~~cL~~~~~~E~~---~~~~C~~C~~~~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~~~~~~~~~~~~~~~~~~v~f 193 (268)
T cd02672 117 STFLQLLKRSLDLEKV---TKAWCDTCCKYQPLEQTTSIRHLPDILLLVLVINLSVTNGEFDDINVVLPSGKVMQNKVSP 193 (268)
T ss_pred CCHHHHHHHHhhhhhc---ccccccccCcccccEEEEEeecCCCcccceEEEEEeccChhhcccCcceeEEEecCCeecc
Confidence 3799999999999964 4688999999999999999999999 9999999999643 224588889999
Q ss_pred cccccccccccccCCCCccceEEEEEEEEeecC-CCcceEEEEEEeCC----CCCEEEEeCCcceecCcccccCCCeEEE
Q 040385 749 PIHDFNLTKYVANKNSSRRQLYELYALTNHYGG-MGSGHYTAHIKLLD----ENRWYNFDDSHISPINEDDVKSAAAYVL 823 (827)
Q Consensus 749 Pl~~Ldl~~~~~~~~~~~~~~Y~L~aVi~H~G~-~~~GHY~a~~k~~~----~~~W~~fnD~~V~~~~~~~v~~~~aYiL 823 (827)
| ..+++..+...... ....|+|+|||+|.|+ .++|||+|++|... .++||.|||..|+++++ .||||
T Consensus 194 ~-~~~~~~~~~~~~~~-~~~~Y~L~gvV~hig~~~~~GHyva~vk~~~~~~~~~~WylFND~~V~~vs~------~aYiL 265 (268)
T cd02672 194 K-AIDHDKLVKNRGQE-SIYKYELVGYVCEINDSSRGQHNVVFVIKVNEESTHGRWYLFNDFLVTPVSE------LAYIL 265 (268)
T ss_pred c-ccccchhhhccCCC-CCceEEEEEEEEEecCCCCCCcEEEEEEccCCCCCCCcEEEecCeEEEEcCc------hheee
Confidence 9 56766665544332 5578999999999994 59999999999754 68999999999999987 89999
Q ss_pred Eee
Q 040385 824 FYR 826 (827)
Q Consensus 824 fY~ 826 (827)
||+
T Consensus 266 fY~ 268 (268)
T cd02672 266 LYQ 268 (268)
T ss_pred ecC
Confidence 996
No 23
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-38 Score=354.16 Aligned_cols=144 Identities=37% Similarity=0.753 Sum_probs=132.0
Q ss_pred CHHHHHHHhhcccccCCCCCCCCccCcccceeEEEEEeeecCCeEEEEEeeeeecccccc-eeeeeEecccccccccccc
Q 040385 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKH-KLETFVNFPIHDFNLTKYV 759 (827)
Q Consensus 681 sL~dCL~~F~~~E~L~~~d~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~-Ki~~~V~fPl~~Ldl~~~~ 759 (827)
++.+|++.|..-|.++......|..|+..+.++|++.|.++|.+|.+|||||.+...... |++..|.|| ..|+|.+|+
T Consensus 335 ~~~~cl~~~~~~~~~~~~~~~~c~~c~~~~~~~kql~~~~lP~~l~~~lkRfe~~~~~~~~ki~~~v~fp-~~l~m~p~~ 413 (492)
T KOG1867|consen 335 TLLDCLDRFTRSEQLGKDSKYKCSSCKSKQESTKQLTIRKLPAVLCLHLKRFEHSATGAREKIDSYVSFP-VLLNMKPYC 413 (492)
T ss_pred hhhhhhhhhhhhhhcCcccccccCCcccccccccccccccCCceeeeeeccccccccccccccCcccccc-hhhcCCccc
Confidence 689999999999999999999999999999999999999999999999999999854433 999999999 699999998
Q ss_pred ccC---C-CCccceEEEEEEEEeecCCCcceEEEEEEeCCCCCEEEEeCCcceecCcccccCCCeEEEEeeC
Q 040385 760 ANK---N-SSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827 (827)
Q Consensus 760 ~~~---~-~~~~~~Y~L~aVi~H~G~~~~GHY~a~~k~~~~~~W~~fnD~~V~~~~~~~v~~~~aYiLfY~R 827 (827)
..+ + +..+..|+|+|||+|+|++++|||+||+|+ .+.||+|||+.|+.+++++|.+..||+|||.+
T Consensus 414 ~~~~~~~~~~~~~~Y~L~AVV~H~G~~~SGHY~aY~r~--~~~~~~~dDs~v~~~s~~eVl~~~aylLFY~~ 483 (492)
T KOG1867|consen 414 SSEKLKSQDNPDHLYELRAVVVHHGTVGSGHYVAYRRQ--SGGWFKCDDSTVTKVSEEEVLSSQAYLLFYTQ 483 (492)
T ss_pred cccccccCCCCCceEEEEEEEEeccCCCCCceEEEEEe--CCCcEEEcCeEEEEeeHHHhhhchhhheehhH
Confidence 851 1 124689999999999999999999999995 88899999999999999999999999999964
No 24
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.6e-37 Score=320.77 Aligned_cols=142 Identities=41% Similarity=0.784 Sum_probs=125.9
Q ss_pred CHHHHHHHhhcccccCCCCCCCCccCc--ccceeEEEEEeeecCCeEEEEEeeeeecc-cccceeeeeEecccccccccc
Q 040385 681 SLYTCLEAFLREEPLVPEDMWYCPQCK--ERRQASKKLDLWRLPEVLVIHLKRFSYSR-SMKHKLETFVNFPIHDFNLTK 757 (827)
Q Consensus 681 sL~dCL~~F~~~E~L~~~d~~~C~~C~--~~~~a~k~~~i~~lP~vLiihLkRF~~~~-~~~~Ki~~~V~fPl~~Ldl~~ 757 (827)
+|++||+.++..|.+.. ..|..|+ ..+.+.++..|.++|++|+|||+||.++. +...|+...|.|| +.|++..
T Consensus 100 ~l~~~l~~~~~~e~~~~---~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~k~~~~v~~~-~~l~~~~ 175 (255)
T cd02257 100 SLEDCLEKFFKEEILEG---DNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNEDGTKEKLNTKVSFP-LELDLSP 175 (255)
T ss_pred cHHHHHHHhhhhhccCC---CCcccCCCCcccceeEEEecccCCceeEEEeeceeeccccccccCCCeEeCC-CcccCcc
Confidence 79999999999998765 5788888 68889999999999999999999999986 7788999999999 7999998
Q ss_pred cccc-----CCCCccceEEEEEEEEeecC-CCcceEEEEEEeCCCCCEEEEeCCcceecCcccc-----cCCCeEEEEee
Q 040385 758 YVAN-----KNSSRRQLYELYALTNHYGG-MGSGHYTAHIKLLDENRWYNFDDSHISPINEDDV-----KSAAAYVLFYR 826 (827)
Q Consensus 758 ~~~~-----~~~~~~~~Y~L~aVi~H~G~-~~~GHY~a~~k~~~~~~W~~fnD~~V~~~~~~~v-----~~~~aYiLfY~ 826 (827)
++.. ........|+|+|||+|.|. ..+|||+||+|+...++||+|||..|++++.+++ ...+||+|||+
T Consensus 176 ~~~~~~~~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~~~~~~~~~~~~yll~Y~ 255 (255)
T cd02257 176 YLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVLEFGSLSSSAYILFYE 255 (255)
T ss_pred ccccccccccccCCCccEEEEEEEEEecCCCCCcCeEEEEeCCCCCceEEEeccccEEcCHHHhhhccCCCCceEEEEEC
Confidence 8752 22236688999999999995 5999999999986669999999999999999988 57899999996
No 25
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-36 Score=333.69 Aligned_cols=140 Identities=27% Similarity=0.609 Sum_probs=122.2
Q ss_pred CCCHHHHHHHhhcccccCCCCCCCCccCcccceeEEEEEeeecCCeEEEEEeeeeecccccceeeeeEeccccccccccc
Q 040385 679 PLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKY 758 (827)
Q Consensus 679 ~~sL~dCL~~F~~~E~L~~~d~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~Ki~~~V~fPl~~Ldl~~~ 758 (827)
.+++..||+.|+.+ ... .++|..|+.+..|+|+..+.++|++||||.+||.+.+|..+|++..|+.| +.||++.|
T Consensus 472 ~v~~~~cleaff~p-q~~---df~s~ac~~K~~a~kt~~~ksfP~yLiiqv~rf~~~dw~pkKld~~iemp-e~ldls~~ 546 (763)
T KOG0944|consen 472 KVPISACLEAFFEP-QVD---DFWSTACGEKKGATKTTRFKSFPDYLIIQVGRFTLQDWVPKKLDVSIEMP-EELDLSSY 546 (763)
T ss_pred cCCHHHHHHHhcCC-cch---hhhhHhhcCccccccccccccCCceEEEEeeEEEecCceeeeeccceecc-hhhchhhh
Confidence 35789999999999 332 27999999999999999999999999999999999999999999999999 99999999
Q ss_pred cccCCC--------------------------------------------------------------------------
Q 040385 759 VANKNS-------------------------------------------------------------------------- 764 (827)
Q Consensus 759 ~~~~~~-------------------------------------------------------------------------- 764 (827)
......
T Consensus 547 rs~g~~p~ee~lpde~~~~~~~~~d~s~i~qL~~MGFp~eac~rAly~tgN~~aEaA~NWl~~HMdDpd~~~p~vvp~~~ 626 (763)
T KOG0944|consen 547 RSKGLQPGEEALPDEAPETSEFAADRSVISQLVEMGFPEEACRRALYYTGNSGAEAASNWLMEHMDDPDIDDPFVVPGNS 626 (763)
T ss_pred hhcCCCCcccccCCcCcccCccchhHHHHHHHHHcCCCHHHHHHHHhhhcCccHHHHHHHHHHhccCcccCCceecCCCC
Confidence 875410
Q ss_pred ---------------------------------------------------------------------------Cccce
Q 040385 765 ---------------------------------------------------------------------------SRRQL 769 (827)
Q Consensus 765 ---------------------------------------------------------------------------~~~~~ 769 (827)
+++.+
T Consensus 627 ~~a~~~~~~e~~v~si~smGf~~~qa~~aL~~~n~nveravDWif~h~d~~~ed~~~~~s~~~~~~~~~~~~~~~dg~~~ 706 (763)
T KOG0944|consen 627 PKADAREVDEESVASIVSMGFSRNQAIKALKATNNNVERAVDWIFSHMDIPVEDAAEGESSSAIESESTPSGTGKDGPGK 706 (763)
T ss_pred CccccCCCChhHheeeeeecCcHHHHHHHHHhcCccHHHHHHHHHhcccccccccCcCCCCCcchhhcCCcccCCCCCcc
Confidence 05678
Q ss_pred EEEEEEEEeec-CCCcceEEEEEEeCCCCCEEEEeCCcceecCcccccCCCeEEEEeeC
Q 040385 770 YELYALTNHYG-GMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827 (827)
Q Consensus 770 Y~L~aVi~H~G-~~~~GHY~a~~k~~~~~~W~~fnD~~V~~~~~~~v~~~~aYiLfY~R 827 (827)
|.|+|+|.|+| +..+|||+|++|. .|+|+.|||++|- .+. +--+..+||.||+|
T Consensus 707 Y~L~a~IsHmGts~~sGHYV~hirK--egkWVlfNDeKv~-~S~-~ppK~lgYvY~y~R 761 (763)
T KOG0944|consen 707 YALFAFISHMGTSAHSGHYVCHIRK--EGKWVLFNDEKVA-ASQ-EPPKDLGYVYLYTR 761 (763)
T ss_pred eeEEEEEecCCCCCCCcceEEEEee--cCcEEEEcchhhh-hcc-CChhhcceEEEEEe
Confidence 99999999999 8999999999996 5899999999997 333 33357799999998
No 26
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3e-37 Score=338.08 Aligned_cols=122 Identities=22% Similarity=0.372 Sum_probs=99.0
Q ss_pred CCHHHHHHHhhcccccCCCCCCCCccCcccceeEEEEEeeecCCeEEEEEeeeeecccccceeeeeEecccccccccccc
Q 040385 680 LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYV 759 (827)
Q Consensus 680 ~sL~dCL~~F~~~E~L~~~d~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~Ki~~~V~fPl~~Ldl~~~~ 759 (827)
.+|.+||+.|+.+|. |.++|+||.|||| +.+......+...+.+|| ...|+.++.
T Consensus 189 ~~L~d~L~~~~~~e~-----------------------~~~~P~vl~~qlq-~~~~~~~~~~~~dry~~~-~~~~~~~~l 243 (343)
T cd02666 189 KDLYDALDRYFDYDS-----------------------LTKLPQRSQVQAQ-LAQPLQRELISMDRYELP-SSIDDIDEL 243 (343)
T ss_pred CCHHHHHHHhcChhh-----------------------hccCCHHHHHHHh-hcccccchheeecccccc-chHHHHHHH
Confidence 489999999999886 8999999999999 544444555666667777 455665554
Q ss_pred ccCC---------------------------CCccceEEEEEEEEeecCCCcceEEEEEEeCCCCCEEEEeCCcceecCc
Q 040385 760 ANKN---------------------------SSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINE 812 (827)
Q Consensus 760 ~~~~---------------------------~~~~~~Y~L~aVi~H~G~~~~GHY~a~~k~~~~~~W~~fnD~~V~~~~~ 812 (827)
.... ......|+|+||++|.|+.++|||++|+|+..++.||+|||+.|++++.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~~~~~~~~~~~W~~~dD~~V~~v~~ 323 (343)
T cd02666 244 IREAIQSESSLVRQAQNELAELKHEIEKQFDDLKSYGYRLHAVFIHRGEASSGHYWVYIKDFEENVWRKYNDETVTVVPA 323 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceEEEEEEEeecCCCCCeEEEEEEECCCCeEEEEECCeeEEecH
Confidence 3210 1156889999999999988999999999987779999999999999998
Q ss_pred cccc------CCCeEEEEee
Q 040385 813 DDVK------SAAAYVLFYR 826 (827)
Q Consensus 813 ~~v~------~~~aYiLfY~ 826 (827)
+++. +.+||+|||.
T Consensus 324 ~ev~~~~~~~~~~pY~l~Yv 343 (343)
T cd02666 324 SEVFLFTLGNTATPYFLVYV 343 (343)
T ss_pred HHHhhcccCCCCCCEEEEeC
Confidence 8876 4689999994
No 27
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-37 Score=341.99 Aligned_cols=146 Identities=33% Similarity=0.663 Sum_probs=129.6
Q ss_pred CHHHHHHHhhcccccCCCCCCCCccCcccceeEEEEEeeecCCeEEEEEeeeeec--ccccceeeeeEeccccccccccc
Q 040385 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYS--RSMKHKLETFVNFPIHDFNLTKY 758 (827)
Q Consensus 681 sL~dCL~~F~~~E~L~~~d~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~--~~~~~Ki~~~V~fPl~~Ldl~~~ 758 (827)
+|++.|+.|.+.|.|++.|+|+|++|++++...|++.|.+||+||+||||||.|+ +....|-+..+.|| ..|||.||
T Consensus 247 nLeesLeqfv~gevlEG~nAYhCeKCdeK~~TvkRt~ik~LPsvl~IqLkRF~yD~e~~~~iK~n~~frFP-~~ldMePY 325 (944)
T KOG1866|consen 247 NLEESLEQFVKGEVLEGANAYHCEKCDEKVDTVKRTCIKKLPSVLAIQLKRFDYDWERECAIKFNDYFRFP-RELDMEPY 325 (944)
T ss_pred hHHHHHHHHHHHHHhcCcchhhhhhhhhhhHhHHHHHHhhCChhheehhhhccchhhhccccccchhcccc-hhhcCCce
Confidence 6899999999999999999999999999999999999999999999999999987 66678999999999 79999999
Q ss_pred cccCC----------------CCccceEEEEEEEEeecCCCcceEEEEEEeC---CCCCEEEEeCCcceecCcccccC--
Q 040385 759 VANKN----------------SSRRQLYELYALTNHYGGMGSGHYTAHIKLL---DENRWYNFDDSHISPINEDDVKS-- 817 (827)
Q Consensus 759 ~~~~~----------------~~~~~~Y~L~aVi~H~G~~~~GHY~a~~k~~---~~~~W~~fnD~~V~~~~~~~v~~-- 817 (827)
+...- +..+.+|+|.||++|.|...+|||.+|+|.. ..++||+|||..|++++-.++..
T Consensus 326 tvsg~a~~e~~~~~~g~~~e~s~~t~~YeLvGVlvHSGqAsaGHYySfIk~rr~~~~~kWykfnD~~Vte~~~n~me~~c 405 (944)
T KOG1866|consen 326 TVSGVAKLEGENVESGQQLEQSAGTTKYELVGVLVHSGQASAGHYYSFIKQRRGEDGNKWYKFNDGDVTECKMNEMENEC 405 (944)
T ss_pred eehhhhhhccccCCcCcccccccCcceeEEEEEEEecccccCcchhhhhhhhccCCCCceEeccCccccccchhhHHHHh
Confidence 87431 1256899999999999999999999999863 35799999999999998665531
Q ss_pred ------------------CCeEEEEeeC
Q 040385 818 ------------------AAAYVLFYRR 827 (827)
Q Consensus 818 ------------------~~aYiLfY~R 827 (827)
-+||||||+|
T Consensus 406 fGGey~q~~~~~~~rrR~WNAYmlFYer 433 (944)
T KOG1866|consen 406 FGGEYMQMMKRMSYRRRWWNAYMLFYER 433 (944)
T ss_pred hcchhhhcccccchHHHhhhhHHHHHHH
Confidence 2799999997
No 28
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-36 Score=336.30 Aligned_cols=145 Identities=30% Similarity=0.565 Sum_probs=129.9
Q ss_pred CHHHHHHHhhcccccCCCCCCCCccCcccceeEEEEEeeecCCeEEEEEeeeeec--ccccceeeeeEeccccccccccc
Q 040385 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYS--RSMKHKLETFVNFPIHDFNLTKY 758 (827)
Q Consensus 681 sL~dCL~~F~~~E~L~~~d~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~--~~~~~Ki~~~V~fPl~~Ldl~~~ 758 (827)
+|+|.++.|.+.|.|+++|.|+|++-| .+.|.|-.-+.++|+||.++||||.|+ +....||+...+|| .++||.||
T Consensus 339 nLqeSfr~yIqvE~l~GdN~Y~ae~~G-lqdAkKGViFeSlPpVlhlqLKRFeyDfe~d~mvKINDryEFP-~eiDl~pf 416 (1089)
T COG5077 339 NLQESFRRYIQVETLDGDNRYNAEKHG-LQDAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYEFP-LEIDLLPF 416 (1089)
T ss_pred hHHHHHHHhhhheeccCCccccccccc-chhhccceeeccCchHHHHHHHHhccccccCceeeecccccCc-chhccccc
Confidence 689999999999999999999998766 489999999999999999999999987 56788999999999 59999999
Q ss_pred cccCCC---CccceEEEEEEEEeecCCCcceEEEEEEeCCCCCEEEEeCCcceecCcccccC------------------
Q 040385 759 VANKNS---SRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKS------------------ 817 (827)
Q Consensus 759 ~~~~~~---~~~~~Y~L~aVi~H~G~~~~GHY~a~~k~~~~~~W~~fnD~~V~~~~~~~v~~------------------ 817 (827)
+..... ..++.|.|+||++|.|.++.|||.|+.|...+|.||+|||++|++++..+|..
T Consensus 417 ld~da~ksen~d~vY~LygVlVHsGDl~~GHyYallKpe~dg~WykfdDtrVtrat~kevleeNfGgd~~~~~k~r~~~~ 496 (1089)
T COG5077 417 LDRDADKSENSDAVYVLYGVLVHSGDLHEGHYYALLKPEKDGRWYKFDDTRVTRATEKEVLEENFGGDHPYKDKIRDHSG 496 (1089)
T ss_pred cCchhhhhcccCcEEEEEEEEEeccccCCceEEEEeccccCCCceeecceehhhHHHHHHHHHhcCCCCCCcccccCCch
Confidence 985432 24589999999999999999999999998789999999999999999888752
Q ss_pred ----CCeEEEEeeC
Q 040385 818 ----AAAYVLFYRR 827 (827)
Q Consensus 818 ----~~aYiLfY~R 827 (827)
-+||||.|-|
T Consensus 497 ~kRfmsAYmLvYlR 510 (1089)
T COG5077 497 IKRFMSAYMLVYLR 510 (1089)
T ss_pred hhhhhhhheeeeeh
Confidence 2689999976
No 29
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=1.3e-34 Score=307.58 Aligned_cols=120 Identities=36% Similarity=0.769 Sum_probs=100.4
Q ss_pred CCCccCcccceeEEEEEeeecCCeEEEEEeeeeeccc--ccceeeeeEeccccccccccccccCCC--CccceEEEEEEE
Q 040385 701 WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRS--MKHKLETFVNFPIHDFNLTKYVANKNS--SRRQLYELYALT 776 (827)
Q Consensus 701 ~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~--~~~Ki~~~V~fPl~~Ldl~~~~~~~~~--~~~~~Y~L~aVi 776 (827)
..|..|+.. +..|.++|++|+|||+||.++.. ...|+...|.||++.|||++++..... .....|+|+|||
T Consensus 143 ~~c~~c~~~-----~~~~~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~~~~~l~l~~~~~~~~~~~~~~~~Y~L~avi 217 (269)
T PF00443_consen 143 IKCSSCKNS-----QSSISSLPPILIIQLKRFEFDQETGRSKKINNPVEFPLEELDLSPYLEKNNSECQSNVKYRLVAVI 217 (269)
T ss_dssp EEETTTTCE-----EEEEEEBBSEEEEEEE-EEEESTSSEEEE--CEEB--SSEEEGGGGBSSCCCTHTSSSEEEEEEEE
T ss_pred ccccccccc-----ccccccccceeeeccccceeccccccccccccccccCchhhhhhhhhccccccccccceeeehhhh
Confidence 467777765 67789999999999999977643 478999999999779999999886542 135899999999
Q ss_pred EeecCCCcceEEEEEEeCCCCCEEEEeCCcceecCcccccC---CCeEEEEe
Q 040385 777 NHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKS---AAAYVLFY 825 (827)
Q Consensus 777 ~H~G~~~~GHY~a~~k~~~~~~W~~fnD~~V~~~~~~~v~~---~~aYiLfY 825 (827)
+|.|+.++|||+||+|+..+++|+.|||+.|++++.++|.. .+||||||
T Consensus 218 ~H~G~~~~GHY~a~v~~~~~~~W~~~dD~~v~~~~~~~v~~~~~~~~yll~Y 269 (269)
T PF00443_consen 218 VHYGSADSGHYVAYVRDSDDGKWYKFDDSRVTEVSWEEVIKSSNSTAYLLFY 269 (269)
T ss_dssp EEESSTTSEEEEEEEEETTTTEEEEEETTEEEEESHHHHCCGGSTCEEEEEE
T ss_pred ccccccccceEEEeeccccCCeEEEeeCCceEECCHHHHhhccCCceEEEeC
Confidence 99999999999999998666789999999999999999987 99999999
No 30
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-36 Score=327.12 Aligned_cols=146 Identities=35% Similarity=0.675 Sum_probs=134.3
Q ss_pred CHHHHHHHhhcccccCCCCCCCCccCcccceeEEEEEeeecCCeEEEEEeeeeec--ccccceeeeeEeccccccccccc
Q 040385 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYS--RSMKHKLETFVNFPIHDFNLTKY 758 (827)
Q Consensus 681 sL~dCL~~F~~~E~L~~~d~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~--~~~~~Ki~~~V~fPl~~Ldl~~~ 758 (827)
++++.|..|.++|.|++.|+|-|++||+++.|.|-+.|..+|=+|.||||||.|+ ...+.|++..|.|| ..|||..|
T Consensus 215 sieeal~afvqpe~ldg~nqy~ce~ck~k~dahkgl~~~~fpy~lt~~lkrfdfdy~tmhriklnd~~tfp-~~l~ln~~ 293 (1203)
T KOG4598|consen 215 SVEEALTAFVQPELLDGSNQYMCENCKSKQDAHKGLRITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMTFP-DVLDLNDY 293 (1203)
T ss_pred hHHHHHHHhcChhhcCCccHHHHhhhhhhhhhhcCceeeccceeeEEeeecccccchheeeeeecccccCc-ccccHHHh
Confidence 6899999999999999999999999999999999999999999999999999876 45688999999999 89999999
Q ss_pred cccCCC-----------------------------------------------------------------CccceEEEE
Q 040385 759 VANKNS-----------------------------------------------------------------SRRQLYELY 773 (827)
Q Consensus 759 ~~~~~~-----------------------------------------------------------------~~~~~Y~L~ 773 (827)
+..... .++..|.|+
T Consensus 294 in~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~n~~~g~~~~~~~~~~~~~~sg~~~yelf 373 (1203)
T KOG4598|consen 294 VNKEKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKRCTPGVQSPNRYQGSENVCVGQPIDHAAVDDIVKTSGDNVYELF 373 (1203)
T ss_pred hhhccCCcchhHhhhcccccccccccccccCCCCcccCcccccCcccccCccccccCCcCchhhhhhHhhcCCccHHHhh
Confidence 874310 167889999
Q ss_pred EEEEeecCCCcceEEEEEEeCCCCCEEEEeCCcceecCccccc-------------CCCeEEEEeeC
Q 040385 774 ALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVK-------------SAAAYVLFYRR 827 (827)
Q Consensus 774 aVi~H~G~~~~GHY~a~~k~~~~~~W~~fnD~~V~~~~~~~v~-------------~~~aYiLfY~R 827 (827)
||..|.|+..||||.||+|+.+.+.||.|||.+|+-++.++|. +.+||||.|||
T Consensus 374 ~imihsg~a~gghy~ayik~~d~~~w~~fnd~~v~~~t~~~i~~sfgg~~~~~~~s~tnaymlmyr~ 440 (1203)
T KOG4598|consen 374 SVMVHSGNAAGGHYFAYIKNLDQDRWYVFNDTRVDFATPLEIEKSFGGHPSGWNQSNTNAYMLMYRR 440 (1203)
T ss_pred hhheecCCCCCceeeeeecccCcCceEEecCccccccCHHHHHHhhCCCCCCccccCcchhhhhhhh
Confidence 9999999999999999999999999999999999999998885 45899999997
No 31
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=1.8e-31 Score=277.27 Aligned_cols=124 Identities=23% Similarity=0.469 Sum_probs=107.8
Q ss_pred CCCHHHHHHHhhcccccCCCCCCCCccCcccceeEEEEEeeecCCeEEEEEeeeeecccccceeeeeEeccccccccccc
Q 040385 679 PLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKY 758 (827)
Q Consensus 679 ~~sL~dCL~~F~~~E~L~~~d~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~Ki~~~V~fPl~~Ldl~~~ 758 (827)
.+||++||+.|+++|. |+++|++|+||||||.++.+...|+++.|.|| ..|||.+|
T Consensus 79 ~~tLedcLe~~~~~e~-----------------------i~~lP~vLiIhLKRF~~~~~~~~Kl~~~I~fP-~~Ldl~~~ 134 (241)
T cd02670 79 GITLEQCLEQYFNNSV-----------------------FAKAPSCLIICLKRYGKTEGKAQKMFKKILIP-DEIDIPDF 134 (241)
T ss_pred cCCHHHHHHHHhchhh-----------------------hhhCCCeEEEEEEccccCCCcceeCCcEECCC-CcCCchhh
Confidence 4699999999999996 89999999999999999887778999999999 79999999
Q ss_pred cccCC---------------------CCccceEEEEEEEEeec-CCCcceEEEEEEeCC-----------CCCEEEEeCC
Q 040385 759 VANKN---------------------SSRRQLYELYALTNHYG-GMGSGHYTAHIKLLD-----------ENRWYNFDDS 805 (827)
Q Consensus 759 ~~~~~---------------------~~~~~~Y~L~aVi~H~G-~~~~GHY~a~~k~~~-----------~~~W~~fnD~ 805 (827)
+.... ......|+|+|||+|+| ++.+|||+||+|+.. ++.||+|||+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~s~~sGHYva~vr~~~~~~~~~~~~~~~~~W~~FDD~ 214 (241)
T cd02670 135 VADDPRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGTSLETGHYVAFVRYGSYSLTETDNEAYNAQWVFFDDM 214 (241)
T ss_pred cccccccccccccccccccccccccCCCCCeEEEEEEEEEeCCCCCCCcCeEEEEECCcccccccccCCCCCeEEEecCc
Confidence 86531 12457899999999999 699999999999865 3799999999
Q ss_pred cceecCcc------cccCCCeEEEEee
Q 040385 806 HISPINED------DVKSAAAYVLFYR 826 (827)
Q Consensus 806 ~V~~~~~~------~v~~~~aYiLfY~ 826 (827)
.|+.+... .+.+++|||||||
T Consensus 215 ~v~~~~~~~~~~~~~~~~~~aYmLFYq 241 (241)
T cd02670 215 ADRDGVSNGFNIPAARLLEDPYMLFYQ 241 (241)
T ss_pred ccccccccccccchhcccCCceEEEeC
Confidence 98876432 5678999999997
No 32
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.5e-31 Score=286.11 Aligned_cols=145 Identities=23% Similarity=0.471 Sum_probs=124.9
Q ss_pred CCCHHHHHHHhhcccccCCCCCCCCccCcccceeEEEEEeeecCCeEEEEEeeeeecccccceeeeeEecccc-cccccc
Q 040385 679 PLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIH-DFNLTK 757 (827)
Q Consensus 679 ~~sL~dCL~~F~~~E~L~~~d~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~Ki~~~V~fPl~-~Ldl~~ 757 (827)
++++.+|++.|+.+.+++ |.|..||.+..|+++..|.++|++||++..||+..++...|+..++...-. -++++.
T Consensus 460 ~~di~~~v~a~f~pdtiE----~~CenCk~K~~a~~k~~~kslPk~LIlq~~R~~lqny~v~kls~pi~~~~D~m~~~~s 535 (749)
T COG5207 460 PQDIRKSVEAFFLPDTIE----WSCENCKGKKKASRKPFIKSLPKYLILQVGRYSLQNYKVEKLSDPIEMRSDDMIKLGS 535 (749)
T ss_pred hhhHHHHHHheECcccee----eehhhhcCcccccccchhhccCceeEEecceeeccceeehhccCceEEccccccchhh
Confidence 347899999999999885 999999999999999999999999999999999999999999888877621 288888
Q ss_pred ccccCCCC------------------------------------------------------------------------
Q 040385 758 YVANKNSS------------------------------------------------------------------------ 765 (827)
Q Consensus 758 ~~~~~~~~------------------------------------------------------------------------ 765 (827)
|+...++.
T Consensus 536 ~msk~~PqtEn~LPdedE~~t~Nqs~I~qL~~mGfp~~~~~rAL~~tgNqDaEsAMNWLFqHMdDPdlndP~~~~~~vPK 615 (749)
T COG5207 536 FMSKFDPQTENLLPDEDEAFTDNQSLIRQLVDMGFPEEDAARALGITGNQDAESAMNWLFQHMDDPDLNDPFVPPPNVPK 615 (749)
T ss_pred HhhccCCcccccCCccccccCchHHHHHHHHHcCCCHHHHHHHHhhccCcchHHHHHHHHhhccCcccCCCCCCCCCCCc
Confidence 88752100
Q ss_pred --------------------------------------------------------------------ccceEEEEEEEE
Q 040385 766 --------------------------------------------------------------------RRQLYELYALTN 777 (827)
Q Consensus 766 --------------------------------------------------------------------~~~~Y~L~aVi~ 777 (827)
....|.|.|||+
T Consensus 616 kDkeVdE~~~~Slle~Gln~n~~Rkal~~~n~d~~r~V~w~~N~~D~tF~EP~v~~eeqqqk~~~~~STa~PYaLtAvI~ 695 (749)
T COG5207 616 KDKEVDESKARSLLENGLNPNLCRKALMDMNTDSKRRVVWCINDDDGTFPEPEVPNEEQQQKKDLGYSTAKPYALTAVIC 695 (749)
T ss_pred ccccccHHHHHHHHHcCCCHHHHHHHHHHccCCchheEEEEEeCCCCCCCCCCCCchhhhhcccccccccCcccceeEEe
Confidence 334599999999
Q ss_pred eec-CCCcceEEEEEEeCCCC--CEEEEeCCcceecCcccccCCCeEEEEeeC
Q 040385 778 HYG-GMGSGHYTAHIKLLDEN--RWYNFDDSHISPINEDDVKSAAAYVLFYRR 827 (827)
Q Consensus 778 H~G-~~~~GHY~a~~k~~~~~--~W~~fnD~~V~~~~~~~v~~~~aYiLfY~R 827 (827)
|.| ++.+|||++|+|....+ +|+.|||+++..++.-++...+.||.||+|
T Consensus 696 HkG~s~haGHYv~fIrk~~~~K~kWvl~nDek~v~~~svE~~k~nGYiylf~R 748 (749)
T COG5207 696 HKGDSIHAGHYVWFIRKNGKDKWKWVLKNDEKTVLNSSVEVLKDNGYIYLFKR 748 (749)
T ss_pred ccCCcccccceEEEEecccCcceeEEEEccchheehhhHHHHhhCCeEEEEec
Confidence 999 99999999999975443 789999999988887778889999999998
No 33
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.1e-30 Score=297.49 Aligned_cols=143 Identities=36% Similarity=0.630 Sum_probs=122.9
Q ss_pred CHHHHHHHhhcccccCCCCCCCCccCcccceeEEEEEeeecCCeEEEEEeeeeeccc--ccceeeeeEeccccccccccc
Q 040385 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRS--MKHKLETFVNFPIHDFNLTKY 758 (827)
Q Consensus 681 sL~dCL~~F~~~E~L~~~d~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~--~~~Ki~~~V~fPl~~Ldl~~~ 758 (827)
++.+||..|..+|.|.++++++|++|...++|.|.+.+.++|.+|+||||||.+... ...|+...|.||+ .|.+...
T Consensus 422 si~~~l~~~~~~e~l~g~nky~c~~c~s~qeae~~l~~k~lp~~L~l~Lkrfk~~~~~~~~~kl~~~v~~pl-el~l~~~ 500 (587)
T KOG1864|consen 422 SITNLLKSFSSTETLSGENKYSCENCCSLQEAERRLKIKKLPYVLTLHLKRFKYSEQQNRYTKLLYRVVFPL-ELRLKDT 500 (587)
T ss_pred cHHHHHHHhcchhhccCCCcccccccCchhhHHHhccccCCcceeeeehhcccccccccccccccccccccc-ceeeccc
Confidence 688999999999999999999999999999999999999999999999999999852 2479999999996 6777555
Q ss_pred cccCCCCccceEEEEEEEEeec-CCCcceEEEEEEeCCCCCEEEEeCCcceecCccccc---CCCeEEEEee
Q 040385 759 VANKNSSRRQLYELYALTNHYG-GMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVK---SAAAYVLFYR 826 (827)
Q Consensus 759 ~~~~~~~~~~~Y~L~aVi~H~G-~~~~GHY~a~~k~~~~~~W~~fnD~~V~~~~~~~v~---~~~aYiLfY~ 826 (827)
...... ....|+|+|||+|.| ++..|||+||+|.... .|+.|||..|..++.+.|. ....|++||.
T Consensus 501 ~~~~~~-~~~~Y~L~avVvH~G~~p~~GHYia~~r~~~~-nWl~fdD~~V~~~s~~~v~~~~~~s~~~~~~~ 570 (587)
T KOG1864|consen 501 LKDDNN-PDRKYDLVAVVVHLGSTPNRGHYVAYVKSLDF-NWLLFDDDNVEPISEEPVSEFTGSSGDTLFYY 570 (587)
T ss_pred cccccC-ccceeeEEEEEEeccCCCCCcceEEEEeeCCC-CceecccccccccCcchhhhccCCCccceeee
Confidence 444332 247999999999999 9999999999996322 3999999999999988886 4567777774
No 34
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.7e-30 Score=318.48 Aligned_cols=145 Identities=31% Similarity=0.542 Sum_probs=127.4
Q ss_pred CHHHHHHHhhcccccCCCCCCCCccCcccceeEEEEEeeecCCeEEEEEeeeeec--ccccceeeeeEeccccccccccc
Q 040385 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYS--RSMKHKLETFVNFPIHDFNLTKY 758 (827)
Q Consensus 681 sL~dCL~~F~~~E~L~~~d~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~--~~~~~Ki~~~V~fPl~~Ldl~~~ 758 (827)
+|.++|+.|++.|.|.+++. +|..|...+.|.|.+.+.+||+||.|||+||.|+ .....|++....|| ..|+|.+|
T Consensus 319 nl~~sf~~y~~~E~l~gdn~-~~~~~~~~~~a~k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~Ki~d~~~fp-~~i~~d~~ 396 (1093)
T KOG1863|consen 319 NLEDSLHLYFEAEILLGDNK-YDAECHGLQDAKKGVLFDSLPPVLFIQLMRFEYDFSTGQKIKINDKFEFP-LIIDMDRY 396 (1093)
T ss_pred hHHHHHHHhhhHHHhcCCcc-ccccccchhhhhcceeeccCCchhhhhhhheeeeccCCceeehhhccCCc-cccccchh
Confidence 48899999999999999998 9999999999999999999999999999999997 56678999999999 69999999
Q ss_pred ccc--CCCC-ccceEEEEEEEEeecCCCcceEEEEEEeCCCCCEEEEeCCcceecCcccccC----------------CC
Q 040385 759 VAN--KNSS-RRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKS----------------AA 819 (827)
Q Consensus 759 ~~~--~~~~-~~~~Y~L~aVi~H~G~~~~GHY~a~~k~~~~~~W~~fnD~~V~~~~~~~v~~----------------~~ 819 (827)
+.. .... ..+.|+|+||..|.|..++|||++|++....++|++|||..|+.+++.++.. ..
T Consensus 397 ~~~~~~~~~~~~~~y~l~~v~vh~g~~~~ghy~~~i~~~~~~~w~kfdd~~v~~~~~~~~l~~~~g~~~~~~~~~~~~~~ 476 (1093)
T KOG1863|consen 397 LSRFKAEESERSAVYSLHAVLVHSGDAHSGHYVAYINPKLDGKWVKFDDLVVTVVSEKEALEQNYGTEEIELSSTADFKN 476 (1093)
T ss_pred ccccchhhhhccceeccchhhcccccccCccceeeecchhhccceeccCceeeeccHHHHHHhhCCCcchhhhcccccCC
Confidence 874 1112 2359999999999889999999999998789999999999999998766531 12
Q ss_pred eEEEEeeC
Q 040385 820 AYVLFYRR 827 (827)
Q Consensus 820 aYiLfY~R 827 (827)
||+|+|-|
T Consensus 477 ~~~lv~~~ 484 (1093)
T KOG1863|consen 477 AYMLVYIR 484 (1093)
T ss_pred cceEEEEe
Confidence 89999976
No 35
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=99.91 E-value=2.1e-23 Score=226.67 Aligned_cols=124 Identities=26% Similarity=0.474 Sum_probs=105.6
Q ss_pred CCHHHHHHHhhcccccCCCCCCCCccCcccceeEEEEEeeecCCeEEEEEeeeeecccccceeeeeEecccccccccccc
Q 040385 680 LSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYV 759 (827)
Q Consensus 680 ~sL~dCL~~F~~~E~L~~~d~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~Ki~~~V~fPl~~Ldl~~~~ 759 (827)
+++.++|+..+..|.... ..|++|++.+.+..+..|.++|+||.|.++|.........|+...+.+| ..+++..++
T Consensus 163 ~tf~~~Le~sl~~e~~~~---a~C~~C~~~~~~~~~r~i~~LPpVL~In~~~~~~~~~w~~~~~~~~~ip-~~i~~~~~~ 238 (295)
T PF13423_consen 163 VTFSQVLEHSLNREQQTR---AWCEKCNKYQPTEQRRTIRSLPPVLSINLNRYSEEEFWPKKNWLKIWIP-PSINLPHFI 238 (295)
T ss_pred chHHHHHHHHHhhccccc---ccccccccccceeeeeeccCCCcEEEEEccCCCcccccccccCCceecc-eeeeccccc
Confidence 378888888888887644 7999999999999999999999999999999998854578899999999 579998888
Q ss_pred ccCC------CCccceEEEEEEEEeec-CCCcceEEEEEEeCC--CCCEEEEeCCcc
Q 040385 760 ANKN------SSRRQLYELYALTNHYG-GMGSGHYTAHIKLLD--ENRWYNFDDSHI 807 (827)
Q Consensus 760 ~~~~------~~~~~~Y~L~aVi~H~G-~~~~GHY~a~~k~~~--~~~W~~fnD~~V 807 (827)
.... .....+|.|.|+|+|.| +..+|||+|++|... +.+||.|||-.|
T Consensus 239 ~~~~~~~~~~~~~~~~Y~L~~~V~~i~~~~~~~HlVs~vrv~~~~~~~W~lFNDflV 295 (295)
T PF13423_consen 239 ADDSQSDLEGESGIFKYELRSMVCHIGDSIESGHLVSLVRVGPSDDSQWYLFNDFLV 295 (295)
T ss_pred cccccccccCCCCceEEEEEEEEEEecCCCCCCceEEEEEcCCCCCCcEEEECcEeC
Confidence 6542 33668999999999999 699999999999753 369999999654
No 36
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.1e-24 Score=229.37 Aligned_cols=121 Identities=28% Similarity=0.495 Sum_probs=101.8
Q ss_pred CcccceeEEEEEeeecCCeEEEEEeeeeec-ccccceeeeeEecccccccccccccc-----CCCCccceEEEEEEEEee
Q 040385 706 CKERRQASKKLDLWRLPEVLVIHLKRFSYS-RSMKHKLETFVNFPIHDFNLTKYVAN-----KNSSRRQLYELYALTNHY 779 (827)
Q Consensus 706 C~~~~~a~k~~~i~~lP~vLiihLkRF~~~-~~~~~Ki~~~V~fPl~~Ldl~~~~~~-----~~~~~~~~Y~L~aVi~H~ 779 (827)
-+....|.+++.+.++|++|++|||||.|. .+...|+...++|| -.|.+..-+.. .-......|+|.||+-|+
T Consensus 287 s~~eV~~s~q~~leklp~vlilhlkrF~ye~tgg~~k~~K~i~~~-~~l~i~~~~~s~gvk~~~~~~~~~yks~~vvyht 365 (420)
T KOG1871|consen 287 SGQEVEASSQTTLEKLPPVLILHLKRFVYEKTGGARKLGKKIEYP-WTLKISKNCFSQGLKIRILIATRPYKSLAVVYHT 365 (420)
T ss_pred CCCeechhhhhhHhhcchhhhhhhhHHHHHhccchhhhchhhhcc-ceeeechhhhccccchhhhccccccceEEEEEec
Confidence 355567888999999999999999999997 56678999999999 57777665442 112245679999999999
Q ss_pred c-CCCcceEEEEEEeCCCCCEEEEeCCcceecCccccc----CCCeEEEEeeC
Q 040385 780 G-GMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVK----SAAAYVLFYRR 827 (827)
Q Consensus 780 G-~~~~GHY~a~~k~~~~~~W~~fnD~~V~~~~~~~v~----~~~aYiLfY~R 827 (827)
| +..+|||++-+-+...+.|+.+||..|..+..++|. +.+||+|.|+|
T Consensus 366 gtsatvghYl~dv~~s~~~gw~rIDD~~i~~v~q~dv~~~t~~r~~yllyY~~ 418 (420)
T KOG1871|consen 366 GTSATVGHYLEDVSRSVPSGWQRIDDALILFVAQEDVEKVTGSRTPYLLYYIE 418 (420)
T ss_pred ccccccCceEEeeeecccCceeEeccceeeeccHhhhccccCccchheeEeee
Confidence 9 899999999999878889999999999999998887 45799999986
No 37
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=5.4e-23 Score=222.32 Aligned_cols=112 Identities=34% Similarity=0.552 Sum_probs=94.1
Q ss_pred EEEEEeeecCCeEEEEEeeeeecc--cccceeeeeEeccccccccccccccCCC--------------------------
Q 040385 713 SKKLDLWRLPEVLVIHLKRFSYSR--SMKHKLETFVNFPIHDFNLTKYVANKNS-------------------------- 764 (827)
Q Consensus 713 ~k~~~i~~lP~vLiihLkRF~~~~--~~~~Ki~~~V~fPl~~Ldl~~~~~~~~~-------------------------- 764 (827)
.|.+.|.+||.+|+|+.-||.|.. +...|+-..|.||+ .||..+.|..+..
T Consensus 297 ~k~~~isrlP~ylTvq~vrf~~k~k~~~~akil~~V~fP~-~ld~~d~ct~el~~k~~~~r~k~r~~edkk~~~~~~~k~ 375 (473)
T KOG1872|consen 297 QKVMYISRLPEYLTVQEVRFFSKAKIMVVAKILNAVNFPK-DLDQQDLCTPELKKKLLCRRKKHRKVEDKKKEEDVMPKV 375 (473)
T ss_pred HHHhHhhcCcccceEEEEEEEeccccchHHHHHHhccChh-hhhHHHhhCHHhhcCccchHHHHHHHHhcCCchhhcccc
Confidence 355678999999999999999875 34568888999995 8999888874310
Q ss_pred ----------------------Cc-cceEEEEEEEEeec-CCCcceEEEEEEeCCCCCEEEEeCCcceecCcccccC---
Q 040385 765 ----------------------SR-RQLYELYALTNHYG-GMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKS--- 817 (827)
Q Consensus 765 ----------------------~~-~~~Y~L~aVi~H~G-~~~~GHY~a~~k~~~~~~W~~fnD~~V~~~~~~~v~~--- 817 (827)
.. ...|+|.|||.|.| +..+|||.|++|. ..+.|++|||..|+-+..+.+.+
T Consensus 376 ~~~~~~~~~~~~e~~~~~~~~~s~~~g~y~l~~vithkgrss~sghy~aw~r~-s~~~w~~fdd~~vs~v~~e~i~~lsg 454 (473)
T KOG1872|consen 376 KGAQERLKEVPLEGMYNKSGGKSRNSGLYDLQLVITHKGRSSKSGHYVAWNRV-SEDKWGHFDDDMVSFVLGETILSLSG 454 (473)
T ss_pred cCcCcccccccccchhccccccccccceeeeeEeeeccccccCCCcceEEEec-cCCceeeccccccccccccceeeecC
Confidence 02 56899999999999 9999999999998 56699999999999999888863
Q ss_pred ----CCeEEEEee
Q 040385 818 ----AAAYVLFYR 826 (827)
Q Consensus 818 ----~~aYiLfY~ 826 (827)
..||||.|.
T Consensus 455 ggd~~~ayvllyk 467 (473)
T KOG1872|consen 455 GGDWHSAYVLLYK 467 (473)
T ss_pred CCccchhhheeec
Confidence 469999995
No 38
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=99.84 E-value=4.9e-21 Score=200.88 Aligned_cols=137 Identities=21% Similarity=0.383 Sum_probs=110.9
Q ss_pred CCCHHHHHHHhhcccccCCCCCCCCccCcccceeEEEEEeeecCCeEEEEEeeeeecccccceeeeeEeccccccccccc
Q 040385 679 PLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKY 758 (827)
Q Consensus 679 ~~sL~dCL~~F~~~E~L~~~d~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~Ki~~~V~fPl~~Ldl~~~ 758 (827)
.+.|.+.|..|..+-.-+- .....| +++.+.++|++||+|++||.-+++..+|+.+.|+||+..+|+.+.
T Consensus 302 QV~l~~lL~Kf~g~t~~e~---------~~~~~~-~rf~l~k~P~ylifh~~rF~kNn~f~ekNpTl~~f~~~~~~~~~~ 371 (442)
T KOG2026|consen 302 QVALFDLLKKFDGETVTEV---------VTPKLA-MRFRLTKLPRYLIFHMKRFKKNNFFKEKNPTLVEFPYSEVDILHV 371 (442)
T ss_pred cchHHHHHHHhcCceeeee---------cchhhh-hheeeecCCceEEEEeeeccccCcccccCCceeeccCCccchhhh
Confidence 4578888888876543211 112234 889999999999999999999999999999999999878888776
Q ss_pred cccCCC--CccceEEEEEEEEeecCCCcceEEEEEEeCCCCCEEEEeCCcceecCcccccCCCeEEEEeeC
Q 040385 759 VANKNS--SRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827 (827)
Q Consensus 759 ~~~~~~--~~~~~Y~L~aVi~H~G~~~~GHY~a~~k~~~~~~W~~fnD~~V~~~~~~~v~~~~aYiLfY~R 827 (827)
...... ..-..|.|.|-+.|- -.-|||...+++...++||..+|-.|++..++-|.-+++||-.|+|
T Consensus 372 ~~~~~~~~~~~~~~~~~~N~i~~--~e~~~~riqi~~~~s~kW~eiqdl~v~e~~~qmi~L~Es~iQiwe~ 440 (442)
T KOG2026|consen 372 LDRLKAVNHKVTQYSLVANAIHE--DEDGNFRIQIYDNSSEKWYEIQDLHVTERLPQMIFLKESFIQIWEK 440 (442)
T ss_pred hhhcccccCccccccchhhhhcC--cccCceEEEEEeCCCcceEEecccchhhhhhHHHHHHHHHHHHHhc
Confidence 543221 122679999998886 7889999999998999999999999999999989889999988875
No 39
>PF06337 DUSP: DUSP domain; InterPro: IPR006615 Deubiquitinating enzymes (DUB) form a large family of cysteine protease that can deconjugate ubiquitin or ubiquitin-like proteins (see PDOC00271 from PROSITEDOC) from ubiquitin-conjugated proteins. All DUBs contain a catalytic domain surrounded by one or more subdomains, some of which contribute to target recognition. The ~120-residue DUSP (domain present in ubiquitin-specific proteases) domain is one of these specific subdomains. Single or tandem DUSP domains are located both N- and C-terminal to the ubiquitin carboxyl-terminal hydrolase catalytic core domain (see PDOC00750 from PROSITEDOC) []. The DUSP domain displays a tripod-like AB3 fold with a three-helix bundle and a three-stranded anti-parallel beta-sheet resembling the legs and seat of the tripod. Conserved residues are predominantly involved in hydrophobic packing interactions within the three alpha-helices. The most conserved DUSP residues, forming the PGPI motif, are flanked by two long loops that vary both in length and sequence. The PGPI motif packs against the three-helix bundle and is highly ordered []. The function of the DUSP domain is unknown but it may play a role in protein/protein interaction or substrate recognition. This domain is associated with ubiquitin carboxyl-terminal hydrolase family 2 (IPR001394 from INTERPRO, MEROPS peptidase family C19). They are a family 100 to 200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast; others include: Mammalian ubiquitin carboxyl-terminal hydrolase 4 (USP4), Mammalian ubiquitin carboxyl-terminal hydrolase 11 (USP11), Mammalian ubiquitin carboxyl-terminal hydrolase 15 (USP15), Mammalian ubiquitin carboxyl-terminal hydrolase 20 (USP20), Mammalian ubiquitin carboxyl-terminal hydrolase 32 (USP32), Vertebrate ubiquitin carboxyl-terminal hydrolase 33 (USP33), Vertebrate ubiquitin carboxyl-terminal hydrolase 48 (USP48). ; GO: 0004221 ubiquitin thiolesterase activity; PDB: 4A3O_B 3PPA_A 3LMN_A 1W6V_A 3T9L_A 4A3P_A 3PV1_A 3JYU_B.
Probab=99.71 E-value=7.1e-18 Score=152.65 Aligned_cols=85 Identities=46% Similarity=0.952 Sum_probs=54.3
Q ss_pred ChHHHHHhccCCCCCCCCCCCccccccccCCCCCCCCCCcccCcccccccccCCC---CCCccccccccCCCcEEEcCHH
Q 040385 1 WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDP---GAGPEIVDTLLEGRDYILLPQE 77 (827)
Q Consensus 1 W~~~W~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgpIdNs~L~~~~~~~~~---~~~~~l~~~l~~~~Dy~~vp~~ 77 (827)
||++|+.||+........+.. ...+||||||++|+........ .....||++|.++.||++||++
T Consensus 11 W~~~W~~~v~~~~~~~~~~~~------------~~~~pGpIdN~~L~~~~~~~~~~~~~~~~~Lk~~l~~~~Dy~~v~~~ 78 (99)
T PF06337_consen 11 WWRQWKSYVSYDNNDNESDPD------------SSPRPGPIDNSDLLDEDNSQLQFPPPENYRLKPNLQEGVDYELVPEE 78 (99)
T ss_dssp HHHHHHHHHTTTTTSTTTTT-------------GGG---SB-GGGGECCTTT---------TEE-SS--CTTTEEEEEHH
T ss_pred HHHHHHHHhCCCCcccccccc------------cCCCCCCEeCHHHhCCCCcccccchhhhhhccccccCCCCEEEECHH
Confidence 999999999887764321111 1367999999999985321000 1134899999999999999999
Q ss_pred HHHHHHHHhcCCCccceEEc
Q 040385 78 VWNQLHSWYGGGPTLARKVI 97 (827)
Q Consensus 78 vW~~l~~wYGggp~i~R~Vi 97 (827)
+|++|.+||||||+|.|.||
T Consensus 79 ~W~~l~~~Ygggp~I~R~vi 98 (99)
T PF06337_consen 79 VWDYLHSWYGGGPEIKRQVI 98 (99)
T ss_dssp HHHHHHHHH-T----EEEEE
T ss_pred HHHHHHHHcCCCCcEEEEee
Confidence 99999999999999999998
No 40
>smart00695 DUSP Domain in ubiquitin-specific proteases.
Probab=99.61 E-value=6.6e-16 Score=135.92 Aligned_cols=71 Identities=46% Similarity=1.103 Sum_probs=61.5
Q ss_pred ChHHHHHhccCCCCCCCCCCCccccccccCCCCCCCCCCcccCcccccccccCCCCCCccccccccCCCcEEEcCHHHHH
Q 040385 1 WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWN 80 (827)
Q Consensus 1 W~~~W~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgpIdNs~L~~~~~~~~~~~~~~l~~~l~~~~Dy~~vp~~vW~ 80 (827)
||++|+.|+..... ..||||||++|+.... ...||+++.++.||++||+++|+
T Consensus 14 W~~~~~~~~~~~~~---------------------~~pGpIdN~~l~~~~~------~~~lk~~l~~~~dy~~V~~~vW~ 66 (86)
T smart00695 14 WYRQWADFVEGKDG---------------------KDPGPIDNSGILCSHG------GPRLKEHLVEGEDYVLIPEELWN 66 (86)
T ss_pred HHHHHHHHhCCCCC---------------------CCCCCCCcHHhcCCCC------CcccccccccCCCEEEeCHHHHH
Confidence 99999999974332 6799999999997421 24799999999999999999999
Q ss_pred HHHHHhcCCC-ccceEEcc
Q 040385 81 QLHSWYGGGP-TLARKVIS 98 (827)
Q Consensus 81 ~l~~wYGggp-~i~R~Vi~ 98 (827)
+|.+|||||| +|.|+||.
T Consensus 67 ~l~~~YGggp~~i~R~~i~ 85 (86)
T smart00695 67 KLVSWYGGGPGPIPRKVVC 85 (86)
T ss_pred HHHHHHCCCCccceEEeec
Confidence 9999999999 69999984
No 41
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=99.40 E-value=1e-12 Score=112.94 Aligned_cols=83 Identities=25% Similarity=0.405 Sum_probs=65.3
Q ss_pred EEEEEcCC---CCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 115 LQLLVMPR---GECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 115 l~~~~~~~---~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
|++|...+ ++..+..||+.+||..+.+.+|++|+| .+++|||.++..+..++|.+++.||+|++|..||.|++|.+
T Consensus 2 ~kLC~~~~~~l~~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~r 80 (88)
T PF14836_consen 2 LKLCVPSNVDLQSVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEER 80 (88)
T ss_dssp EEEEETTE--CCEEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE-
T ss_pred ceeccCCCcccccHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEee
Confidence 67777765 456889999999999999999999999 77899999999999999999999999999999999999999
Q ss_pred ecCCCCcccC
Q 040385 192 DNVNGTNCKS 201 (827)
Q Consensus 192 ~~~~g~~~~~ 201 (827)
|. | |+||
T Consensus 81 n~-D--GtWP 87 (88)
T PF14836_consen 81 NE-D--GTWP 87 (88)
T ss_dssp -T-T--S--T
T ss_pred cc-C--CCCC
Confidence 84 7 7887
No 42
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.77 E-value=2.1e-08 Score=116.18 Aligned_cols=124 Identities=24% Similarity=0.403 Sum_probs=96.5
Q ss_pred CCCccCcccceeEEEEEeeecCCeEEEEEeeeeecc--c--ccceeeeeEecccccccccccccc----------C----
Q 040385 701 WYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSR--S--MKHKLETFVNFPIHDFNLTKYVAN----------K---- 762 (827)
Q Consensus 701 ~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~--~--~~~Ki~~~V~fPl~~Ldl~~~~~~----------~---- 762 (827)
-.|+.|++++...-+..+..||++|.|...-+.... . ...|.-..|-+| +.+.|..--.. .
T Consensus 702 ~~C~~C~k~ep~~q~~~vr~LPd~L~in~~~~~~~~~~~~a~q~~~~~~vWLP-~~~~~~~~k~~~~~v~~~s~~~~~~~ 780 (1118)
T KOG1275|consen 702 AWCETCTKPEPTSQKKNVRSLPDCLSINTCLNVHELVDFWARQNKLLEDVWLP-EWFHMIISKNKAQLVSTISDLDVSPL 780 (1118)
T ss_pred cccccccCCCCcccccccccCcceeeeeeeccchhhhhhHHHhhccccccccc-hheeEEEecccceeeeeeccccCCCC
Confidence 379999999999999999999999999998876532 2 233556778888 67766543111 0
Q ss_pred ---CCCccceEEEEEEEEeec-CCCcceEEEEEEe--------CCCCCEEEEeCCcceecCcccccC-----CCeEEEEe
Q 040385 763 ---NSSRRQLYELYALTNHYG-GMGSGHYTAHIKL--------LDENRWYNFDDSHISPINEDDVKS-----AAAYVLFY 825 (827)
Q Consensus 763 ---~~~~~~~Y~L~aVi~H~G-~~~~GHY~a~~k~--------~~~~~W~~fnD~~V~~~~~~~v~~-----~~aYiLfY 825 (827)
+...-.+|+|.|+|.|.| +-+.+|.++++|. +.+.+||.|||--|+++++++.+. +-+-||+|
T Consensus 781 ~~~d~~~~~vYeL~a~V~~I~d~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV~~ite~EAl~~~~~WKvP~Il~Y 860 (1118)
T KOG1275|consen 781 PDYDEPSAVVYELDAMVHAIGDNENEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLVSEITEEEALHFDGPWKVPAILYY 860 (1118)
T ss_pred ccccCCceEEEEeeeEEEEeccCCCccceEEEEEccCcccccCcCcceeEEEcceeeeeCChHHheEeccCccCcEEEEE
Confidence 011237899999999999 7799999999985 234699999999999999988763 46889999
No 43
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=98.06 E-value=7.9e-05 Score=76.99 Aligned_cols=142 Identities=19% Similarity=0.310 Sum_probs=87.3
Q ss_pred ceeEEEeCCCC---ccceEEEEEEcCCCCCcCeEEEEEecCCCcHHHHHHHHHhhcCCCC--CCcEEEEEEeCCceEEec
Q 040385 400 FMYLSLPLQAT---TTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQ--SEELKVAEIQNHSIQRFL 474 (827)
Q Consensus 400 F~~LsL~lp~~---~~~~~~~~~~~~~~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~--~~~l~~~e~~~~~~~~~~ 474 (827)
+++--|++|.. +.+.+.++++..... .--.+.+.++|++++.||++++.+.++++. ...+.+.++++++|++++
T Consensus 3 l~YevL~i~l~ElE~kk~~kv~w~~~~~~-~~~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~ 81 (213)
T PF14533_consen 3 LYYEVLDIPLKELENKKQFKVTWLNDGLK-EEQEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKIL 81 (213)
T ss_dssp EEEEE-SS-HHHHHSB--EEEEEE-TTS--EE-EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE
T ss_pred eEEEecCCCHHHHhCceEEEEEEECCCCc-ceeEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeec
Confidence 44444555544 344566666654432 224689999999999999999999988854 368999999999999999
Q ss_pred cCccccccccCCCCcEEEEEccCCc-----c--cceEEEEeeeecccCcCccccccCceeeccceEEEeecCCCCCHHHH
Q 040385 475 DDPLISLSTIKDDDHLAAYRVPKLV-----K--KAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKI 547 (827)
Q Consensus 475 ~d~~~~l~~i~~~d~i~~ye~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~~~~~~~~~~~s~~~i 547 (827)
. +..++..+.+...+.+-++|... . +...+++.|-..+. ...||.||++.+. ...+..++
T Consensus 82 ~-~d~~i~~l~~~~~~r~E~ip~ee~~~~~~~~~~~li~V~hf~k~~----------~~~hGiPF~f~v~--~gE~f~~t 148 (213)
T PF14533_consen 82 S-EDEPISSLNDYITLRIEEIPEEELNLDDESEGEKLIPVFHFHKDP----------SRTHGIPFLFVVK--PGETFSDT 148 (213)
T ss_dssp --TTSBGGGS--TTEEEEEE--GGGSS--TT--TEEEEEEEEESSST----------T-EEEEEEEEEEE--TT--HHHH
T ss_pred C-CCCchhhccCcceeeeecCChHHhhcccccccceEEEEEEEecCc----------cccCCCCEEEEee--CCCcHHHH
Confidence 8 57788888665667788888743 1 34677888864322 2889999999997 44477788
Q ss_pred HHHHHHHh
Q 040385 548 QSTVQRML 555 (827)
Q Consensus 548 ~~~v~~~l 555 (827)
.+++.+++
T Consensus 149 K~Rl~~rl 156 (213)
T PF14533_consen 149 KERLQKRL 156 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88887776
No 44
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=96.57 E-value=0.0017 Score=66.83 Aligned_cols=82 Identities=21% Similarity=0.483 Sum_probs=59.3
Q ss_pred CCccCcccceeEEEEEeeecCCeEEEEEeeeeecccccceeeeeEeccccccccccccccCCCCccceEEEEEEEEeecC
Q 040385 702 YCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGG 781 (827)
Q Consensus 702 ~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~Ki~~~V~fPl~~Ldl~~~~~~~~~~~~~~Y~L~aVi~H~G~ 781 (827)
-|.+|+.+. ..++|.+.++|+|+++|+ . .+-..+ |+..|.-.- ....|++.+||-..-.
T Consensus 172 pCn~C~~ks-Q~rkMvlekv~~vfmLHF---V--eGLP~n------------dl~~ysF~f---eg~~Y~Vt~VIQY~~~ 230 (275)
T PF15499_consen 172 PCNSCNSKS-QRRKMVLEKVPPVFMLHF---V--EGLPHN------------DLQHYSFHF---EGCLYQVTSVIQYQAN 230 (275)
T ss_pred CCcccCChH-HhHhhhhhcCchhhhhhh---h--ccCCcc------------CCCccceee---cCeeEEEEEEEEEecc
Confidence 599999754 567899999999999994 2 121111 222222211 4578999999987654
Q ss_pred CCcceEEEEEEeCCCCCEEEEeCCcc
Q 040385 782 MGSGHYTAHIKLLDENRWYNFDDSHI 807 (827)
Q Consensus 782 ~~~GHY~a~~k~~~~~~W~~fnD~~V 807 (827)
.-|+++++++ .+|.|..|||-+=
T Consensus 231 --~~HFvtWi~~-~dGsWLecDDLkg 253 (275)
T PF15499_consen 231 --LNHFVTWIRD-SDGSWLECDDLKG 253 (275)
T ss_pred --CceeEEEEEc-CCCCeEeeccCCC
Confidence 5799999998 7888999999753
No 45
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=95.67 E-value=0.071 Score=46.81 Aligned_cols=66 Identities=20% Similarity=0.124 Sum_probs=52.9
Q ss_pred eeEEEecccccHHHHHHHHHHHhCCCCccEEEEEee--CCccccccccccccccccccCCCCeEEEEE
Q 040385 125 CSTIRISKKETIGELHRRACSIFYLNLEQICIWDYY--GHRKHALMNDMDRTLDDANIQMDQDILVEV 190 (827)
Q Consensus 125 ~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~--~~~~~~ll~~~~~tl~d~~l~~~q~il~E~ 190 (827)
....++++..||.+|+.++-..+|++++..||..+. +......+.+.+++|..+++.+|..|.+.-
T Consensus 15 ~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D 82 (87)
T PF14560_consen 15 SVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVVD 82 (87)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEEe
Confidence 567899999999999999999999999999987662 334445567778999999999998887763
No 46
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=94.97 E-value=0.098 Score=44.06 Aligned_cols=62 Identities=8% Similarity=0.025 Sum_probs=50.6
Q ss_pred CCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEE
Q 040385 122 RGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILV 188 (827)
Q Consensus 122 ~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~ 188 (827)
......+.++..+||.+|+.++....+++.+..||| |. +..|.+...+|+++++..+..|++
T Consensus 8 ~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li-~~----Gk~L~D~~~~L~~~gi~~~~~l~l 69 (71)
T cd01796 8 SETTFSLDVDPDLELENFKALCEAESGIPASQQQLI-YN----GRELVDNKRLLALYGVKDGDLVVL 69 (71)
T ss_pred CCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEE-EC----CeEccCCcccHHHcCCCCCCEEEE
Confidence 445567889999999999999999999999999998 32 335666567899999999887765
No 47
>PTZ00044 ubiquitin; Provisional
Probab=93.60 E-value=0.34 Score=41.14 Aligned_cols=64 Identities=19% Similarity=0.255 Sum_probs=52.5
Q ss_pred CCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 122 RGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 122 ~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
+.....+.++..+||.+|+.++....+++++..||| |.+ ..|.+ +.+|.++++..+..|.+-++
T Consensus 9 ~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~-~~g----~~L~d-~~~l~~~~i~~~~~i~l~~~ 72 (76)
T PTZ00044 9 TGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLI-YSG----KQMSD-DLKLSDYKVVPGSTIHMVLQ 72 (76)
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEE-ECC----EEccC-CCcHHHcCCCCCCEEEEEEE
Confidence 445677899999999999999999999999999999 543 23553 67899999999987776655
No 48
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=93.34 E-value=0.4 Score=40.57 Aligned_cols=64 Identities=22% Similarity=0.367 Sum_probs=51.2
Q ss_pred CCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 122 RGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 122 ~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
.+....+.++..+|+.+|+++++...+++++..||+ |.+ ..|.+ +.+|.++++..+..+.+-++
T Consensus 9 ~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~-~~G----~~L~d-~~~L~~~~i~~~~~l~l~~~ 72 (74)
T cd01807 9 QGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLL-FKG----KALAD-DKRLSDYSIGPNAKLNLVVR 72 (74)
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEE-ECC----EECCC-CCCHHHCCCCCCCEEEEEEc
Confidence 345567889999999999999999999999999987 433 34655 58999999999887765443
No 49
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=93.33 E-value=0.3 Score=41.61 Aligned_cols=60 Identities=12% Similarity=0.103 Sum_probs=46.7
Q ss_pred CCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccC-CCCeEEE
Q 040385 123 GECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQ-MDQDILV 188 (827)
Q Consensus 123 ~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~-~~q~il~ 188 (827)
+....+.++...||.+|+.++....+++++..|| |.+.. |.+.+++|.++++. .|..+.+
T Consensus 12 ~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL--~~G~~----L~dD~~tL~~ygi~~~g~~~~l 72 (75)
T cd01799 12 TVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW--VIGQR----LARDQETLYSHGIRTNGDSAFL 72 (75)
T ss_pred CCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE--EcCCe----eCCCcCCHHHcCCCCCCCEEEE
Confidence 3456788899999999999999999999999898 44332 44556899999998 4455544
No 50
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=92.80 E-value=0.37 Score=40.20 Aligned_cols=61 Identities=20% Similarity=0.341 Sum_probs=48.7
Q ss_pred CCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEE
Q 040385 123 GECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVE 189 (827)
Q Consensus 123 ~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E 189 (827)
.....+.++..+|+.+|++++....+++++..||+ |.+ ..+.+ +.+|.++++..+..|.+.
T Consensus 9 g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~-~~g----~~l~d-~~~L~~~~i~~g~~l~v~ 69 (71)
T cd01812 9 GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLI-FKG----KERDD-AETLDMSGVKDGSKVMLL 69 (71)
T ss_pred CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEe-eCC----cccCc-cCcHHHcCCCCCCEEEEe
Confidence 44467788999999999999999999999999987 322 23444 678999999998877654
No 51
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=92.79 E-value=0.69 Score=40.36 Aligned_cols=64 Identities=19% Similarity=0.139 Sum_probs=52.6
Q ss_pred eEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCcc-ccccccccccccccccCCCCeEEEE
Q 040385 126 STIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRK-HALMNDMDRTLDDANIQMDQDILVE 189 (827)
Q Consensus 126 ~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~-~~ll~~~~~tl~d~~l~~~q~il~E 189 (827)
...+++...|+.+|++++-..+|+++...||..|.+... ...|.+.+++|..+++.+|..|.+.
T Consensus 15 ~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv 79 (84)
T cd01789 15 FEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI 79 (84)
T ss_pred eeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence 567799999999999999999999999999976655422 2246677889999999999988776
No 52
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=92.50 E-value=0.64 Score=39.34 Aligned_cols=65 Identities=12% Similarity=0.271 Sum_probs=52.2
Q ss_pred CCCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 121 PRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 121 ~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
.......+.++..+||.+|++++....+++.+..||+ | .+..|.+ +.+|.+++++.+..+.+-.+
T Consensus 6 ~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~-~----~G~~L~D-~~tL~~~~i~~~~tl~l~~~ 70 (74)
T cd01810 6 DKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLS-F----EGRPMED-EHPLGEYGLKPGCTVFMNLR 70 (74)
T ss_pred CCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEE-E----CCEECCC-CCCHHHcCCCCCCEEEEEEE
Confidence 4455567888999999999999999999999988886 3 2334555 58999999999988877665
No 53
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=92.31 E-value=0.95 Score=39.73 Aligned_cols=64 Identities=17% Similarity=0.277 Sum_probs=51.2
Q ss_pred CCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 122 RGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 122 ~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
......+.+.+.+++..|+++.|+..+++.+.+|++ |.+ ..|. .+.|+.++++.++..|-+-++
T Consensus 20 ~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~-f~G----~~L~-~~~T~~~l~m~d~d~I~v~l~ 83 (87)
T cd01763 20 DGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFL-FDG----QRIR-DNQTPDDLGMEDGDEIEVMLE 83 (87)
T ss_pred CCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEE-ECC----eECC-CCCCHHHcCCCCCCEEEEEEe
Confidence 456678999999999999999999999999999987 332 2343 367999999999987755444
No 54
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=92.20 E-value=0.66 Score=38.43 Aligned_cols=61 Identities=21% Similarity=0.302 Sum_probs=49.2
Q ss_pred CeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEE
Q 040385 124 ECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEV 190 (827)
Q Consensus 124 ~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~ 190 (827)
....+.++..+||.+|++++....+++++..||- | .+..| +.+.+|.++++..+..|.+-+
T Consensus 6 ~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~-~----~G~~L-~d~~tL~~~~i~~~~~I~l~~ 66 (69)
T PF00240_consen 6 KTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLI-Y----NGKEL-DDDKTLSDYGIKDGSTIHLVI 66 (69)
T ss_dssp EEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEE-E----TTEEE-STTSBTGGGTTSTTEEEEEEE
T ss_pred cEEEEEECCCCCHHHhhhhcccccccccccceee-e----eeecc-cCcCcHHHcCCCCCCEEEEEE
Confidence 3567788899999999999999999999999875 2 23455 557899999999988666543
No 55
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=92.15 E-value=0.79 Score=38.64 Aligned_cols=63 Identities=21% Similarity=0.252 Sum_probs=51.1
Q ss_pred CCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 123 GECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 123 ~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
.....+.++...|+.+|++++....+++++..||+ |.+ ..|.+ +.+|.++++..+..|-+-.+
T Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~-~~g----~~L~d-~~tl~~~~i~~g~~i~l~~~ 72 (76)
T cd01806 10 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI-YSG----KQMND-DKTAADYKLEGGSVLHLVLA 72 (76)
T ss_pred CCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEE-ECC----eEccC-CCCHHHcCCCCCCEEEEEEE
Confidence 44566788999999999999999999999999998 543 24444 67999999999987766655
No 56
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=91.91 E-value=0.71 Score=38.54 Aligned_cols=61 Identities=10% Similarity=0.208 Sum_probs=48.7
Q ss_pred CCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEE
Q 040385 122 RGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILV 188 (827)
Q Consensus 122 ~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~ 188 (827)
......+.+...+||.+|++.+....+++.++.||+ |.+ ..|.+ +.+|.++++..+..+-+
T Consensus 7 ~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li-~~G----~~L~d-~~~l~~~~i~~~stl~l 67 (70)
T cd01798 7 TGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVI-FAG----KELRN-TTTIQECDLGQQSILHA 67 (70)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEE-ECC----eECCC-CCcHHHcCCCCCCEEEE
Confidence 445567888899999999999999999999999997 332 34544 58999999998876643
No 57
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=91.58 E-value=0.81 Score=38.13 Aligned_cols=61 Identities=18% Similarity=0.294 Sum_probs=49.1
Q ss_pred CCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEE
Q 040385 122 RGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILV 188 (827)
Q Consensus 122 ~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~ 188 (827)
+.....+.++..+|+.+|++++.+..+++++..||+ |. +..|.+ +.+|.++++..+..+.+
T Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~-~~----g~~L~d-~~~L~~~~i~~~~~l~l 69 (72)
T cd01809 9 DSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLI-YS----GRVLKD-DETLSEYKVEDGHTIHL 69 (72)
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE-EC----CEECCC-cCcHHHCCCCCCCEEEE
Confidence 345577888899999999999999999999999998 32 335655 67999999998876643
No 58
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=91.47 E-value=0.5 Score=41.91 Aligned_cols=62 Identities=18% Similarity=0.154 Sum_probs=52.7
Q ss_pred eeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 125 CSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 125 ~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
...+.++..+|+.+|+..+.+.|++++.+=+||-. ++ .|.|..+||.++++.++..|.+-+.
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~d-G~----~L~DDsrTLssyGv~sgSvl~Llid 77 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSID-GK----ILSDDCATLGTLGVIPESVILLKAD 77 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeec-Cc----eeccCCccHHhcCCCCCCEEEEEec
Confidence 45677888999999999999999999998888843 33 5778899999999999998887765
No 59
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=91.17 E-value=1.2 Score=37.63 Aligned_cols=64 Identities=22% Similarity=0.311 Sum_probs=51.6
Q ss_pred CCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 122 RGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 122 ~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
+.....+.++..+|+.+|++++.+..+++++..||| |.+ ..|.+ +.+|.++++..+..|.+-++
T Consensus 9 ~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~-~~g----~~L~d-~~~L~~~~i~~~~~i~l~~~ 72 (76)
T cd01803 9 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAG----KQLED-GRTLSDYNIQKESTLHLVLR 72 (76)
T ss_pred CCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEE-ECC----EECCC-CCcHHHcCCCCCCEEEEEEE
Confidence 344567888899999999999999999999999998 432 34544 57999999999988777665
No 60
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=90.86 E-value=0.94 Score=37.96 Aligned_cols=57 Identities=19% Similarity=0.355 Sum_probs=45.5
Q ss_pred eEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEE
Q 040385 126 STIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILV 188 (827)
Q Consensus 126 ~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~ 188 (827)
..+.+...+|+.+|++.+.+..+++.+..||+ |. +..|.+ +.+|.++++..+..|.+
T Consensus 12 ~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li-~~----Gk~L~d-~~tL~~~~i~~~stl~l 68 (71)
T cd01808 12 EEIEIAEDASVKDFKEAVSKKFKANQEQLVLI-FA----GKILKD-TDTLTQHNIKDGLTVHL 68 (71)
T ss_pred EEEEECCCChHHHHHHHHHHHhCCCHHHEEEE-EC----CeEcCC-CCcHHHcCCCCCCEEEE
Confidence 47888889999999999999999998888886 22 234554 57999999998877644
No 61
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=90.40 E-value=0.94 Score=38.01 Aligned_cols=60 Identities=22% Similarity=0.336 Sum_probs=47.7
Q ss_pred CCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEE
Q 040385 122 RGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDIL 187 (827)
Q Consensus 122 ~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il 187 (827)
......+.++..+||.+|+.++....+++++..||| |.+ ..|.| +.+|.++++..+..|-
T Consensus 7 ~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li-~~G----~~L~D-~~~l~~~~i~~~~tv~ 66 (70)
T cd01794 7 TGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWF-FSG----KLLTD-KTRLQETKIQKDYVVQ 66 (70)
T ss_pred CCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEE-ECC----eECCC-CCCHHHcCCCCCCEEE
Confidence 345567888999999999999999999999999998 433 34655 6899999998776553
No 62
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=90.03 E-value=1.8 Score=36.67 Aligned_cols=63 Identities=22% Similarity=0.252 Sum_probs=50.2
Q ss_pred CCeeEEEecccccHHHHHHHHHHHhCC--CCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 123 GECSTIRISKKETIGELHRRACSIFYL--NLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 123 ~~~~~~~~Sk~~ti~~l~~~~~~~f~i--~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
.....+.++..+|+.+|++.+....++ ++++.||+ |. +..|.+ +.+|.++++..+..|++-+.
T Consensus 10 g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~-~~----G~~L~d-~~~L~~~~i~~~~~i~~~~~ 74 (77)
T cd01805 10 QQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLI-YS----GKILKD-DTTLEEYKIDEKDFVVVMVS 74 (77)
T ss_pred CCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEE-EC----CEEccC-CCCHHHcCCCCCCEEEEEEe
Confidence 345678888899999999999999999 88888886 32 345654 57999999999988877655
No 63
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=89.88 E-value=2.4 Score=38.51 Aligned_cols=64 Identities=19% Similarity=0.271 Sum_probs=52.1
Q ss_pred CCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 122 RGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 122 ~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
......+.++..+||.+|++++....+++.++.||| |. +..|.+ +.+|.++++..+..|-+-++
T Consensus 36 ~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi-~~----Gk~L~D-~~tL~dy~I~~~stL~l~~~ 99 (103)
T cd01802 36 TGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLI-WN----NMELED-EYCLNDYNISEGCTLKLVLA 99 (103)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEE-EC----CEECCC-CCcHHHcCCCCCCEEEEEEe
Confidence 355677899999999999999999999999999997 33 234545 57999999999988776655
No 64
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=89.81 E-value=2 Score=36.89 Aligned_cols=60 Identities=25% Similarity=0.352 Sum_probs=48.7
Q ss_pred EE-EecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEEe
Q 040385 127 TI-RISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLD 192 (827)
Q Consensus 127 ~~-~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~~ 192 (827)
.+ .+...+||.+|++++....+++.+.-||| |. +..|.+ +.+|.++++..+..|.+-++.
T Consensus 15 ~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi-~~----Gk~L~D-~~tL~~y~i~~~~~i~l~~~~ 75 (78)
T cd01797 15 TVDSLSRLTKVEELREKIQELFNVEPECQRLF-YR----GKQMED-GHTLFDYNVGLNDIIQLLVRQ 75 (78)
T ss_pred EeeccCCcCcHHHHHHHHHHHhCCCHHHeEEE-eC----CEECCC-CCCHHHcCCCCCCEEEEEEec
Confidence 45 36678999999999999999999999998 32 344655 689999999999988887763
No 65
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=89.62 E-value=1.6 Score=36.83 Aligned_cols=62 Identities=16% Similarity=0.278 Sum_probs=49.1
Q ss_pred CeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 124 ECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 124 ~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
...++.+...+||.+|+.++....+++.+..||+ |.+ ..|.+ +.+|.++++..+..|-+=++
T Consensus 9 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li-~~G----k~L~D-~~tL~~~~i~~~~tl~l~~~ 70 (74)
T cd01793 9 NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLL-LAG----VPLED-DATLGQCGVEELCTLEVAGR 70 (74)
T ss_pred CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEE-ECC----eECCC-CCCHHHcCCCCCCEEEEEEe
Confidence 3467788899999999999999999999999997 332 34555 58999999998877655444
No 66
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=89.62 E-value=1.8 Score=37.09 Aligned_cols=60 Identities=13% Similarity=0.242 Sum_probs=46.6
Q ss_pred CCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEE
Q 040385 123 GECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVE 189 (827)
Q Consensus 123 ~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E 189 (827)
.....+.++..+|+.+|++.+.+.++++++..||- +. +..|.+ + +|.++++.++..|.+=
T Consensus 11 G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~--~~---Gk~L~d-~-~L~~~gi~~~~~i~l~ 70 (78)
T cd01804 11 GTRFDLSVPPDETVEGLKKRISQRLKVPKERLALL--HR---ETRLSS-G-KLQDLGLGDGSKLTLV 70 (78)
T ss_pred CCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEE--EC---CcCCCC-C-cHHHcCCCCCCEEEEE
Confidence 34567888999999999999999999988877764 32 335655 3 8999999998876553
No 67
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=89.26 E-value=2.1 Score=36.22 Aligned_cols=60 Identities=18% Similarity=0.298 Sum_probs=47.9
Q ss_pred CCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEE
Q 040385 123 GECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILV 188 (827)
Q Consensus 123 ~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~ 188 (827)
+....+.++..+||.+|++++.+.++++++..||- |. +..|.+ +++|.++++.++..|.+
T Consensus 11 Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi-~~----Gk~L~D-~~tL~~ygi~~~stv~l 70 (73)
T cd01791 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLK-KW----YTIFKD-HISLGDYEIHDGMNLEL 70 (73)
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEE-eC----CcCCCC-CCCHHHcCCCCCCEEEE
Confidence 45566788899999999999999999999998884 33 345655 57999999998877654
No 68
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=88.78 E-value=2.2 Score=36.64 Aligned_cols=65 Identities=14% Similarity=0.140 Sum_probs=49.9
Q ss_pred CCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 123 GECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 123 ~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
+....+.+...+|+.+|++.+.+.++++.++.||-..+ .+..|.+ +.+|.++++..+..|.+=++
T Consensus 12 G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~---~G~~L~D-~~tL~~~gi~~gs~l~l~~~ 76 (80)
T cd01792 12 GNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLD---SREVLQD-GVPLVSQGLGPGSTVLLVVQ 76 (80)
T ss_pred CCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEecc---CCCCCCC-CCCHHHcCCCCCCEEEEEEE
Confidence 34456677889999999999999999999888883222 2235655 56999999999988876655
No 69
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=88.18 E-value=2.2 Score=36.71 Aligned_cols=68 Identities=22% Similarity=0.347 Sum_probs=51.6
Q ss_pred cCCCCeeEEEecccccHHHHHHHHHHHhCCCCcc-EEEEEeeCCccccccccccccccccccCCCCeEEEE
Q 040385 120 MPRGECSTIRISKKETIGELHRRACSIFYLNLEQ-ICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVE 189 (827)
Q Consensus 120 ~~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~-~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E 189 (827)
.+++......|.+.+|+.+|...+......+... ++|..-+... .+-.+.++||.|+++..+..|++|
T Consensus 13 lpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~--~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 13 LPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRR--ELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp ETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTE--ECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred CCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCc--CCCccccccHHHhcCCCCeEEEEE
Confidence 5777788999999999999999998887766554 8886544322 222222589999999999888887
No 70
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=86.80 E-value=2.1 Score=35.76 Aligned_cols=60 Identities=20% Similarity=0.308 Sum_probs=46.3
Q ss_pred CCCCeeEEEecccccHHHHHHHHHHHhCCCC-ccEEEEEeeCCccccccccccccccccccCCCCeE
Q 040385 121 PRGECSTIRISKKETIGELHRRACSIFYLNL-EQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDI 186 (827)
Q Consensus 121 ~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~-~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~i 186 (827)
.+.....+.+.+..++..|++..|+..+++. +.++++ |.+ ..| +.+.|+.++++..+..|
T Consensus 8 ~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~-fdG----~~L-~~~~T~~~~~ied~d~I 68 (72)
T PF11976_consen 8 QDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLI-FDG----KRL-DPNDTPEDLGIEDGDTI 68 (72)
T ss_dssp TTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEE-ETT----EEE--TTSCHHHHT-STTEEE
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEE-ECC----EEc-CCCCCHHHCCCCCCCEE
Confidence 3444678889999999999999999999999 899987 333 224 44679999999988754
No 71
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=86.59 E-value=2.4 Score=36.03 Aligned_cols=61 Identities=11% Similarity=0.126 Sum_probs=49.9
Q ss_pred eeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 125 CSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 125 ~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
...+.+...+||.+|+.++....+++++..+|+ |.+ ..|.+ +++|.++++..+..|.+-++
T Consensus 9 ~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~-~~G----~~L~d-~~tL~~~~i~~g~~l~v~~~ 69 (76)
T cd01800 9 MLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQ-YEG----IFIKD-SNSLAYYNLANGTIIHLQLK 69 (76)
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEE-ECC----EEcCC-CCcHHHcCCCCCCEEEEEEe
Confidence 356778889999999999999999999999997 433 34555 58999999999988877666
No 72
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=86.09 E-value=2.2 Score=34.26 Aligned_cols=54 Identities=31% Similarity=0.473 Sum_probs=42.4
Q ss_pred CeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCC
Q 040385 124 ECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMD 183 (827)
Q Consensus 124 ~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~ 183 (827)
....+.++...|+.+|+..+...++++++..||. +.+ ..|.+ +.+|.++++..+
T Consensus 10 ~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~-~~g----~~L~d-~~tL~~~~i~~~ 63 (64)
T smart00213 10 GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLI-YKG----KVLED-DRTLADYNIQDG 63 (64)
T ss_pred ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEE-ECC----EECCC-CCCHHHcCCcCC
Confidence 3567888999999999999999999998888876 322 33544 579999988654
No 73
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=85.64 E-value=1.9 Score=37.23 Aligned_cols=66 Identities=9% Similarity=0.182 Sum_probs=38.4
Q ss_pred CCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCcccccc-ccccccccccccCCCCeEEEE
Q 040385 122 RGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALM-NDMDRTLDDANIQMDQDILVE 189 (827)
Q Consensus 122 ~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll-~~~~~tl~d~~l~~~q~il~E 189 (827)
.+....+.++..+|+.+|++++.+.|+++.....|+ .+++....+ .+..++|.+++|..|..+++.
T Consensus 12 ~dG~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~--~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 12 KDGMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLS--KDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp SSEEEEEEE-TTSBHHHHHHHHHHHS---TTT---B--SSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred CCCCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEE--ecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 344567788999999999999999999998776654 333333334 456889999999999877653
No 74
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=85.53 E-value=3 Score=35.37 Aligned_cols=62 Identities=11% Similarity=0.107 Sum_probs=46.7
Q ss_pred CeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEE
Q 040385 124 ECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILV 188 (827)
Q Consensus 124 ~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~ 188 (827)
....+.+...+|+.+|++++....+++++.-+|-- ..-++..+.| +.+|.++++..++.|.+
T Consensus 10 ~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~--~~~~Gk~l~D-~~~L~~~~i~~g~~i~l 71 (74)
T cd01813 10 QEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLG--LKVKGKPAED-DVKISALKLKPNTKIMM 71 (74)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEe--ecccCCcCCC-CcCHHHcCCCCCCEEEE
Confidence 34567788889999999999999999998877642 1112334554 68999999998887654
No 75
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=85.51 E-value=3.9 Score=33.31 Aligned_cols=60 Identities=27% Similarity=0.398 Sum_probs=45.8
Q ss_pred CCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEE
Q 040385 123 GECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILV 188 (827)
Q Consensus 123 ~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~ 188 (827)
.....+.+....|+.+|++++.+.++++.+..+|+ +.+ ..+.+ +.+|.++++.++..|.+
T Consensus 7 ~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~-~~g----~~l~d-~~~l~~~~v~~~~~i~v 66 (69)
T cd01769 7 GKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLI-YAG----KILKD-DKTLSDYGIQDGSTLHL 66 (69)
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEE-ECC----cCCCC-cCCHHHCCCCCCCEEEE
Confidence 34456777888999999999999999998888884 322 34543 67899999988876654
No 76
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=83.92 E-value=7.6 Score=33.33 Aligned_cols=69 Identities=13% Similarity=0.223 Sum_probs=49.9
Q ss_pred EcCCCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCcccccc-ccccccccccccCCCCeEEEE
Q 040385 119 VMPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALM-NDMDRTLDDANIQMDQDILVE 189 (827)
Q Consensus 119 ~~~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll-~~~~~tl~d~~l~~~q~il~E 189 (827)
+.+++......|+..+|+.+|.+.+....+.....++|---+... .+- .++++||.|+++..+..+++|
T Consensus 10 RlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk--~l~~~d~~~tL~e~gL~p~~~l~v~ 79 (80)
T smart00166 10 RLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRR--TFTKDDYSKTLLELALLPSSTLVLE 79 (80)
T ss_pred EcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCc--CCccccccCCHHHCCCCCceEEEEe
Confidence 357778888999999999999999966565555567665433222 222 234789999999988888876
No 77
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=82.55 E-value=0.57 Score=46.18 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=16.1
Q ss_pred CCccCcccCCCccchhhHHHhhhC
Q 040385 273 VGLTGLLNLGNTCFMNSAIQCLVH 296 (827)
Q Consensus 273 ~g~~GL~NlGNTCYmNSvLQcL~~ 296 (827)
..++|+.|-+|||++||++|.+-.
T Consensus 31 ~eft~~PN~~dnCWlNaL~QL~~~ 54 (193)
T PF05408_consen 31 MEFTGLPNNHDNCWLNALLQLFRY 54 (193)
T ss_dssp -EEE----SSSTHHHHHHHHHHHH
T ss_pred eEEecCCCCCCChHHHHHHHHHHH
Confidence 346799999999999999997643
No 78
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=79.53 E-value=14 Score=32.03 Aligned_cols=71 Identities=21% Similarity=0.242 Sum_probs=51.2
Q ss_pred EcCCCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 119 VMPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 119 ~~~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
..+++.....+|...+++.+|...+-. .+.+++.+.|---+....... .+.+.||+++||.....++||.+
T Consensus 11 RlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~-~d~~~TL~e~GL~P~~~LfVq~r 81 (82)
T cd01773 11 RYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSH-LDYDITLQEAGLCPQETVFVQER 81 (82)
T ss_pred ECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCC-cccCCCHHHcCCCCCcEEEEecC
Confidence 357777788889999999999998766 455666776653222222222 35568999999999989999865
No 79
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=79.20 E-value=13 Score=31.51 Aligned_cols=67 Identities=16% Similarity=0.236 Sum_probs=47.0
Q ss_pred EcCCCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccc-cccccccccccCCCCeEEEE
Q 040385 119 VMPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMN-DMDRTLDDANIQMDQDILVE 189 (827)
Q Consensus 119 ~~~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~-~~~~tl~d~~l~~~q~il~E 189 (827)
+.+++......|+..+|+.+|.+.+...... ...++|+--+.... +-+ +.++||.|++|. +..++++
T Consensus 8 RlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~--~~~~~~~~TL~e~gL~-~s~~~~~ 75 (77)
T cd01767 8 RLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRV--LTDLDYELTLQEAGLV-NEVVFQR 75 (77)
T ss_pred EcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCcc--CCCCCccCcHHHcCCc-cceEEEE
Confidence 3577777888999999999999999765432 45677775443322 222 478899999999 4455554
No 80
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=78.35 E-value=15 Score=31.67 Aligned_cols=71 Identities=14% Similarity=0.135 Sum_probs=50.6
Q ss_pred EcCCCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 119 VMPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 119 ~~~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
.++++.....+|...+++++|+..+... +-+.+.++|---+...... -.+.+.||.|++|.....|++|.+
T Consensus 10 RlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~-~~d~~~TL~e~gL~p~~~L~Veer 80 (80)
T cd01771 10 RTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLT-QLDPNFTLLELKLYPQETLILEER 80 (80)
T ss_pred ECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCc-CCCCCCcHHHcCCCCCcEEEEEcC
Confidence 3677777888999999999999998653 4445566664333332222 135578999999998888989853
No 81
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=77.55 E-value=14 Score=32.37 Aligned_cols=69 Identities=17% Similarity=0.204 Sum_probs=47.2
Q ss_pred cCCCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCcccccc----ccccccccccccCCCCeEEEE
Q 040385 120 MPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALM----NDMDRTLDDANIQMDQDILVE 189 (827)
Q Consensus 120 ~~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll----~~~~~tl~d~~l~~~q~il~E 189 (827)
.+++.....+|...+|+.+|...+-. .+-.++.++|---+.......+ .+.+.||+|+||.....+++|
T Consensus 11 lp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V~ 83 (85)
T cd01774 11 LPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFVQ 83 (85)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEEe
Confidence 57777788899999999999999943 3334456665422222211111 356789999999988778776
No 82
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=77.08 E-value=23 Score=30.85 Aligned_cols=64 Identities=22% Similarity=0.183 Sum_probs=42.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhcCCCCCCcEEEEE-EeCCceEEeccCcccccc--ccCCCCcEEE
Q 040385 429 STYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAE-IQNHSIQRFLDDPLISLS--TIKDDDHLAA 492 (827)
Q Consensus 429 ~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e-~~~~~~~~~~~d~~~~l~--~i~~~d~i~~ 492 (827)
...+.++++..++.+|++.|+..+|+++..+.+... -.+......+.|....|. .+.++..|.+
T Consensus 14 ~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V 80 (87)
T PF14560_consen 14 RSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHV 80 (87)
T ss_dssp SEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEE
T ss_pred eeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEE
Confidence 456789999999999999999999998765544443 234445555555555554 3555555544
No 83
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=72.41 E-value=12 Score=32.27 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=30.3
Q ss_pred eeEEEecccccHHHHHHHHHHHhCCCCccEEEEE
Q 040385 125 CSTIRISKKETIGELHRRACSIFYLNLEQICIWD 158 (827)
Q Consensus 125 ~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~ 158 (827)
...+++....++.+|.+++++.|+++.+.+.|+-
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsY 45 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSY 45 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEe
Confidence 4678888999999999999999999988898873
No 84
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=72.10 E-value=4 Score=40.41 Aligned_cols=34 Identities=26% Similarity=0.436 Sum_probs=25.9
Q ss_pred Eeec--CCCcceEEEEEEeCCCCCEEEEeCCcceecCc
Q 040385 777 NHYG--GMGSGHYTAHIKLLDENRWYNFDDSHISPINE 812 (827)
Q Consensus 777 ~H~G--~~~~GHY~a~~k~~~~~~W~~fnD~~V~~~~~ 812 (827)
.|.| --+.||-+++++ ..+.||.+||+.+.+.++
T Consensus 129 f~agi~~~g~~Havfa~~--ts~gWy~iDDe~~y~~tP 164 (193)
T PF05408_consen 129 FHAGIFLKGQEHAVFACV--TSDGWYAIDDEDFYPWTP 164 (193)
T ss_dssp EEEEEEEESTTEEEEEEE--ETTCEEEEETTEEEE---
T ss_pred hhhHheecCCcceEEEEE--eeCcEEEecCCeeeeCCC
Confidence 3666 356899999998 588999999999988764
No 85
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=70.68 E-value=12 Score=42.28 Aligned_cols=65 Identities=20% Similarity=0.242 Sum_probs=51.9
Q ss_pred CCCeeEEEecccccHHHHHHHHHHHhC---CCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEEe
Q 040385 122 RGECSTIRISKKETIGELHRRACSIFY---LNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLD 192 (827)
Q Consensus 122 ~~~~~~~~~Sk~~ti~~l~~~~~~~f~---i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~~ 192 (827)
+.....+.++..+||.+|++++....+ ++.++.||+ |. +..|.| +++|.++++..+..|++=+..
T Consensus 9 ~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLI-y~----GkiL~D-d~tL~dy~I~e~~~Ivvmv~k 76 (378)
T TIGR00601 9 QQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLI-YS----GKILSD-DKTVREYKIKEKDFVVVMVSK 76 (378)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEE-EC----CEECCC-CCcHHHcCCCCCCEEEEEecc
Confidence 344567888999999999999999998 888888987 33 345655 579999999988888777663
No 86
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=68.85 E-value=8.4 Score=31.89 Aligned_cols=36 Identities=14% Similarity=0.226 Sum_probs=24.8
Q ss_pred CCCCeeEEEecccccHHHHHHHHHHHhCCCCccEEE
Q 040385 121 PRGECSTIRISKKETIGELHRRACSIFYLNLEQICI 156 (827)
Q Consensus 121 ~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~Rl 156 (827)
++.....+.++...++.++++.+|+.|+++++++.|
T Consensus 4 ~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L 39 (65)
T PF11470_consen 4 YNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDL 39 (65)
T ss_dssp TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EE
T ss_pred cCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEE
Confidence 445567888999999999999999999999886554
No 87
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=67.46 E-value=4.7 Score=32.78 Aligned_cols=36 Identities=17% Similarity=0.472 Sum_probs=28.9
Q ss_pred CCCCCccCcccceeEEEEEe--eecCCeEEEEEeeeee
Q 040385 699 DMWYCPQCKERRQASKKLDL--WRLPEVLVIHLKRFSY 734 (827)
Q Consensus 699 d~~~C~~C~~~~~a~k~~~i--~~lP~vLiihLkRF~~ 734 (827)
++|.|++|+.+.-..|.... ..+.+++=|++++|-.
T Consensus 3 ~~~kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~~ 40 (68)
T COG3478 3 NAFKCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFIV 40 (68)
T ss_pred ccccCCCcCCcchhhceeeccCCCcceeEEecccEEEE
Confidence 56889999998766666554 4788999999999975
No 88
>PLN02560 enoyl-CoA reductase
Probab=65.92 E-value=22 Score=38.99 Aligned_cols=62 Identities=10% Similarity=0.178 Sum_probs=46.3
Q ss_pred EEEecccccHHHHHHHHHHHhCC-CCccEEEEEee--CCccccccccccccccccccCCCCeEEEE
Q 040385 127 TIRISKKETIGELHRRACSIFYL-NLEQICIWDYY--GHRKHALMNDMDRTLDDANIQMDQDILVE 189 (827)
Q Consensus 127 ~~~~Sk~~ti~~l~~~~~~~f~i-~~~~~RlW~~~--~~~~~~ll~~~~~tl~d~~l~~~q~il~E 189 (827)
++.++..+|+.||++.+.+..++ +++..||+... ++.+...+++ +++|.+.++.++.+|.+-
T Consensus 17 ~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d-~ktL~d~gv~~gstLy~k 81 (308)
T PLN02560 17 GLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDD-SKSLKDYGLGDGGTVVFK 81 (308)
T ss_pred eEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCC-CCCHHhcCCCCCceEEEE
Confidence 57778889999999999999886 67888988432 2223334544 578999999988876654
No 89
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=63.91 E-value=46 Score=28.75 Aligned_cols=53 Identities=25% Similarity=0.313 Sum_probs=43.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhcCCC-CCCcEEEEEEeCC-ceEEeccCccccc
Q 040385 429 STYTVTVPKHGRCRDLIQVLGNICSLK-QSEELKVAEIQNH-SIQRFLDDPLISL 481 (827)
Q Consensus 429 ~~~~v~~~k~~~~~~l~~~l~~~~~~~-~~~~l~~~e~~~~-~~~~~~~d~~~~l 481 (827)
.-.+|.+++..+..++++.+.+..++. ++++..++|+... ...+.+.+...++
T Consensus 13 ~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~~~~er~L~~~e~pl 67 (87)
T cd01768 13 TYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGDGGLERLLLPDECPL 67 (87)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECCceEEEEeCCCCChH
Confidence 346799999999999999999999998 7889999998876 6677777655544
No 90
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=58.91 E-value=42 Score=28.37 Aligned_cols=66 Identities=20% Similarity=0.256 Sum_probs=46.1
Q ss_pred cCCCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEE
Q 040385 120 MPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEV 190 (827)
Q Consensus 120 ~~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~ 190 (827)
++++....+.+-...|+.|++.++|+..++++..+.++..-...+ ...+++ +++....+++|.+|.
T Consensus 6 LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~~~~~--~~~~~~---~d~~~L~~~El~Ve~ 71 (72)
T cd01760 6 LPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLGLDEK--KPLDLD---TDSSSLAGEELEVEP 71 (72)
T ss_pred CcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEecCCCc--CCcCch---hhhhhhcCCEEEEEe
Confidence 577777889999999999999999999999999888775532220 111111 234445567777764
No 91
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=58.78 E-value=46 Score=28.81 Aligned_cols=47 Identities=21% Similarity=0.205 Sum_probs=36.2
Q ss_pred EEEEEEcCCC---CeeEEEecccccHHHHHHHHHHHhCCC--CccEEEEEee
Q 040385 114 RLQLLVMPRG---ECSTIRISKKETIGELHRRACSIFYLN--LEQICIWDYY 160 (827)
Q Consensus 114 ~l~~~~~~~~---~~~~~~~Sk~~ti~~l~~~~~~~f~i~--~~~~RlW~~~ 160 (827)
.++|+..... .-+++.++...|..++++.+.+.|++. +.++.||.+.
T Consensus 4 ~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~ 55 (93)
T PF00788_consen 4 VLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVE 55 (93)
T ss_dssp EEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEE
T ss_pred EEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEE
Confidence 4666654332 267899999999999999999999993 4589998433
No 92
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=57.04 E-value=50 Score=28.25 Aligned_cols=67 Identities=9% Similarity=0.141 Sum_probs=45.6
Q ss_pred cCCCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCcccccc-ccccccccccccCCCCeEEEE
Q 040385 120 MPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALM-NDMDRTLDDANIQMDQDILVE 189 (827)
Q Consensus 120 ~~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll-~~~~~tl~d~~l~~~q~il~E 189 (827)
.+++......|+..+|+.+|.+.+....+.. ..+.|---+... .+- .+.++||.|++|.....++++
T Consensus 11 lp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk--~~~~~d~~~TL~elgL~Psa~L~v~ 78 (79)
T cd01772 11 LLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRK--VFTEDDMEKPLQELGLVPSAVLIVT 78 (79)
T ss_pred CCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCe--ECCcccccCCHHHCCCCCceEEEEe
Confidence 5777778889999999999999997654322 445543222211 121 245789999999987777775
No 93
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=56.88 E-value=29 Score=39.81 Aligned_cols=69 Identities=16% Similarity=0.248 Sum_probs=52.4
Q ss_pred EEEcCCCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 117 LLVMPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 117 ~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
|.+....++..+.+...+||.+|++.+.+.|+++.+..+|- | .+.+|+| +.||...+|++|-.|=+-.+
T Consensus 18 V~Vkt~~dk~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLI-f----aGrILKD-~dTL~~~gI~Dg~TvHLVik 86 (493)
T KOG0010|consen 18 VTVKTPKDKYEVNVASDSSVLQLKELIAQRFGAPPDQLVLI-Y----AGRILKD-DDTLKQYGIQDGHTVHLVIK 86 (493)
T ss_pred EEEecCCcceeEecccchHHHHHHHHHHHhcCCChhHeeee-e----cCccccC-hhhHHHcCCCCCcEEEEEec
Confidence 33333334778889999999999999999999999988764 3 3446765 67999999999976644433
No 94
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=56.74 E-value=36 Score=35.21 Aligned_cols=53 Identities=11% Similarity=0.244 Sum_probs=32.2
Q ss_pred eeEEEecccccHHHHHHHHHHHhCCCC---ccEEEEEeeCCcccccccccccccccc
Q 040385 125 CSTIRISKKETIGELHRRACSIFYLNL---EQICIWDYYGHRKHALMNDMDRTLDDA 178 (827)
Q Consensus 125 ~~~~~~Sk~~ti~~l~~~~~~~f~i~~---~~~RlW~~~~~~~~~ll~~~~~tl~d~ 178 (827)
...+.+.|..||.||++.+.+.++++. .++|+|..++..-...+. .+..+...
T Consensus 35 ~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~-~d~~i~~l 90 (213)
T PF14533_consen 35 EYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILS-EDEPISSL 90 (213)
T ss_dssp EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE--TTSBGGGS
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecC-CCCchhhc
Confidence 467889999999999999999998875 389999987765444443 34445444
No 95
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=56.60 E-value=71 Score=26.84 Aligned_cols=64 Identities=23% Similarity=0.293 Sum_probs=41.8
Q ss_pred cCCCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEE
Q 040385 120 MPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEV 190 (827)
Q Consensus 120 ~~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~ 190 (827)
++++....+.+-...|+.|.+..+|+..++.++.+.++..-. .+ .+ +++. ++....++++.+|.
T Consensus 7 LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~-~k--~l-~~~~---d~~~L~~~El~ve~ 70 (71)
T PF02196_consen 7 LPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGE-KK--PL-DWDQ---DSSSLPGEELRVEK 70 (71)
T ss_dssp ETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEE-EE--EE--TTS---BGGGGTTSEEEEEE
T ss_pred CCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCC-Cc--cc-cCCC---ceeeecCCEEEEEe
Confidence 477777888999999999999999999999999887774331 11 11 1121 22333457888875
No 96
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=55.49 E-value=70 Score=27.13 Aligned_cols=65 Identities=20% Similarity=0.334 Sum_probs=47.7
Q ss_pred cCCCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 120 MPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 120 ~~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
+++.+...+.+-...||+|++.++|+.-++..+.+-++.. +..+.- +++ +|..+..++++.+|-+
T Consensus 6 LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~-g~~k~l---~~~---qD~~~L~~~El~vE~r 70 (73)
T cd01817 6 LPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLV-GGDKPL---VLD---QDSSVLAGQEVRLEKR 70 (73)
T ss_pred CCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEe-cCCccc---ccC---CccceeeccEEEEEEe
Confidence 5777778889999999999999999999999988887765 222211 111 1344556788888865
No 97
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=55.30 E-value=33 Score=29.33 Aligned_cols=63 Identities=16% Similarity=0.203 Sum_probs=41.3
Q ss_pred CeeEEEecccccHHHHHHHHHHHhCCCCc---cEEEEEeeCCccccccccccccccccccCCCCeEEE
Q 040385 124 ECSTIRISKKETIGELHRRACSIFYLNLE---QICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILV 188 (827)
Q Consensus 124 ~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~---~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~ 188 (827)
....+.+.-..++++|+..+...++++.. ..+-|... ..++..| +.+.||.++++.+|..+.+
T Consensus 13 ~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~-~~~g~~L-~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 13 RQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLA-RAGGRPL-DPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp -EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG--GGTEEE-ETTSBCGGGT--TT-EEEE
T ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEE-ecCCccc-CCcCcHhHcCCCCCCEEEe
Confidence 56788888899999999999999998643 23468776 3455545 5588999999999986654
No 98
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=54.21 E-value=31 Score=29.31 Aligned_cols=54 Identities=20% Similarity=0.176 Sum_probs=38.9
Q ss_pred cccccHHHHHHHHHHHhCC-CCccEEEEEeeCCccccccccccccccccccCCCCeEEE
Q 040385 131 SKKETIGELHRRACSIFYL-NLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILV 188 (827)
Q Consensus 131 Sk~~ti~~l~~~~~~~f~i-~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~ 188 (827)
+...|+.+|++.+.+..+. +.+..||+... ++..|.+ +.+|.+.++.++..|++
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~---~g~~L~d-~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEP---KGKSLKD-DDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCC---CCcccCC-cccHhhcCCCCCCEEEE
Confidence 4567999999999988764 67778887432 3334544 45899999988776654
No 99
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=54.05 E-value=1e+02 Score=26.82 Aligned_cols=53 Identities=28% Similarity=0.300 Sum_probs=42.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhcCCCC-CCcEEEEEEeCCceEEeccCccccc
Q 040385 429 STYTVTVPKHGRCRDLIQVLGNICSLKQ-SEELKVAEIQNHSIQRFLDDPLISL 481 (827)
Q Consensus 429 ~~~~v~~~k~~~~~~l~~~l~~~~~~~~-~~~l~~~e~~~~~~~~~~~d~~~~l 481 (827)
.-.++.+++..++.++++.+.+..++.. .+...++|+......+.+.+...|+
T Consensus 16 ~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~~~~~er~L~~~e~Pl 69 (90)
T smart00314 16 TYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVLPDGKERVLPDDENPL 69 (90)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEeCCcEEEEeCCCCcce
Confidence 3467899999999999999999999976 5789999998666777777554444
No 100
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=52.30 E-value=53 Score=28.33 Aligned_cols=40 Identities=25% Similarity=0.387 Sum_probs=33.8
Q ss_pred CCeeEEEecccccHHHHHHHHHHHhCCC--CccEEEEEeeCC
Q 040385 123 GECSTIRISKKETIGELHRRACSIFYLN--LEQICIWDYYGH 162 (827)
Q Consensus 123 ~~~~~~~~Sk~~ti~~l~~~~~~~f~i~--~~~~RlW~~~~~ 162 (827)
..-+++.+++.+|..++.+.+.+.|++. ++++.|+.....
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~ 53 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGD 53 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECC
Confidence 4557999999999999999999999998 457888876654
No 101
>cd01779 Myosin_IXb_RA ubitquitin-like domain of Myosin_IXb_RA. Myosin_IXb_RA RasGTP binding domain from guanine nucleotide exchange factors. In some proteins the domain acts as a RasGTP effector (AF6, canoe and RalGDS, for example), but in other cases it may not bind to RasGTP at all.
Probab=51.02 E-value=1.2e+02 Score=27.06 Aligned_cols=63 Identities=16% Similarity=0.201 Sum_probs=48.5
Q ss_pred EEEEEEcCCCCCcCeEEEEEecCCCcHHHHHHHHHhhcCCCCCCcEEEEEEeCCceEEeccCc
Q 040385 415 MTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDP 477 (827)
Q Consensus 415 ~~~~~~~~~~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~d~ 477 (827)
..+.++|......++-..|+..|+++..+++.-+...+++......+++|+....-..+.-||
T Consensus 11 ~~l~IyP~~~a~~~~~C~v~a~k~sTAa~VI~~~i~~L~Ld~tk~YvLaEVkEsGgEEwvL~p 73 (105)
T cd01779 11 YHLHIYPQLIAESTISCRVTATKDSTAADVIDDVIASLQLDGTKCYVLAEVKESGGEEWVLDP 73 (105)
T ss_pred EEEEEccCCCCCCceEeEeEeccCCcHHHHHHHHHHHhCcCccccEEEEEeeccCCeeeecCc
Confidence 345556655555567778999999999999999999999999999999999877544444334
No 102
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=49.06 E-value=9.9 Score=47.59 Aligned_cols=120 Identities=14% Similarity=0.180 Sum_probs=84.8
Q ss_pred CCCHHHHHHHhhcccccCCCCCCCCccCcccceeEEEEEeeecCCeEEEEEeeeeecccccceeeeeEeccccccccccc
Q 040385 679 PLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKY 758 (827)
Q Consensus 679 ~~sL~dCL~~F~~~E~L~~~d~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~Ki~~~V~fPl~~Ldl~~~ 758 (827)
...+.+|+..|+..+.+..+...-|+.|.....-. ..... ..++|+..|+........+....+.+++.++.+-.+
T Consensus 481 ~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~ 556 (842)
T KOG1870|consen 481 VEILFDCFNKIFAADELKLDSIYSDEELFDYELGV--LKVQG--SIYAIIVVRFRSRLPRSKGIRSHVSSKLFGLPLLVS 556 (842)
T ss_pred ceeccchhhhhhccCccccccccCCcceEEeeccc--ccccc--cceEEEEEeeccccccccCcccCCCccccCCcceee
Confidence 34688999999999876667777777776543221 11111 167788888875443344666778888888888776
Q ss_pred cccCCCCccceEEEEEEEEeecCCCcceEEEEEEeCCCCCEEEEeCCcceecC
Q 040385 759 VANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPIN 811 (827)
Q Consensus 759 ~~~~~~~~~~~Y~L~aVi~H~G~~~~GHY~a~~k~~~~~~W~~fnD~~V~~~~ 811 (827)
+... .....++|..+++|.++...||+ ..+.|+..++..+....
T Consensus 557 ~~~~--~~~t~~~l~~~~~~~~s~~~~~~-------~~~v~~~~~~~~~~~~~ 600 (842)
T KOG1870|consen 557 VLSG--AQSTEEDLLSVICHRTSRYSREP-------PLNVGYGVDDQSLKEVS 600 (842)
T ss_pred ccCC--CcccccchhhHHhhcccccCCcC-------ccccccCCCcccccccc
Confidence 6653 25578999999999998888888 56788888888777654
No 103
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=47.42 E-value=36 Score=29.04 Aligned_cols=51 Identities=25% Similarity=0.246 Sum_probs=38.0
Q ss_pred ccccHHHHHHHHHHHhC--CC-CccEEEEEeeCCccccccccccccccccccCCCCeEEE
Q 040385 132 KKETIGELHRRACSIFY--LN-LEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILV 188 (827)
Q Consensus 132 k~~ti~~l~~~~~~~f~--i~-~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~ 188 (827)
-.+||.+|++++...++ +. ++..||- |.++ .|.+ ++||.++++..+..|.+
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLI-y~GK----iL~D-~~TL~dygI~~gstlhL 72 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLI-HCGR----KLKD-DQTLDFYGIQSGSTIHI 72 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEE-eCCc----CCCC-CCcHHHcCCCCCCEEEE
Confidence 35799999999999984 64 6777874 4333 3544 68999999998876643
No 104
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=46.01 E-value=1.5e+02 Score=25.47 Aligned_cols=67 Identities=22% Similarity=0.282 Sum_probs=48.5
Q ss_pred EEEEEEcCCCCCcCeEEEEEecCCCcHHHHHHHHHhhcCC-CCCCcEEEEE-EeCCceEEeccCccccc
Q 040385 415 MTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSL-KQSEELKVAE-IQNHSIQRFLDDPLISL 481 (827)
Q Consensus 415 ~~~~~~~~~~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~-~~~~~l~~~e-~~~~~~~~~~~d~~~~l 481 (827)
..+.++..++.....-.++.+++..++.++++++.+..++ .+.....+++ ...+...+.+.+...++
T Consensus 3 ~~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~er~L~~~E~pl 71 (93)
T PF00788_consen 3 GVLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEERPLDDDECPL 71 (93)
T ss_dssp EEEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEEEEETTTSBHH
T ss_pred eEEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEEEEcCCCCchH
Confidence 3466777777655556789999999999999999999998 5566777763 44556667776544443
No 105
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=44.69 E-value=97 Score=26.13 Aligned_cols=67 Identities=19% Similarity=0.243 Sum_probs=41.9
Q ss_pred EEEEEcCCCCCcCeEEEEEecCCCcHHHHHHHHHhhcCCCCCCcEEEEEEeCCceEEeccCccccc--cccCCCCcEEEE
Q 040385 416 TVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISL--STIKDDDHLAAY 493 (827)
Q Consensus 416 ~~~~~~~~~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~d~~~~l--~~i~~~d~i~~y 493 (827)
.+++....|. .+.++++.+.++.+|++.++...++++. ++-++ +.++ ++.|. ..| ..+.++..|..|
T Consensus 3 ~i~vkt~~Gk----~~~~~v~~~~TV~~LK~~I~~~~~~~~~-~qrLi--~~Gk---~L~D~-~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 3 EVVCNDRLGK----KVRVKCNPDDTIGDLKKLIAAQTGTRPE-KIVLK--KWYT---IFKDH-ISLGDYEIHDGMNLELY 71 (73)
T ss_pred EEEEECCCCC----EEEEEeCCCCcHHHHHHHHHHHhCCChH-HEEEE--eCCc---CCCCC-CCHHHcCCCCCCEEEEE
Confidence 3444444443 3566888999999999999988887654 44332 4443 45543 233 346666666655
No 106
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=44.64 E-value=55 Score=34.73 Aligned_cols=64 Identities=14% Similarity=0.156 Sum_probs=44.7
Q ss_pred EEEecccccHHHHHHHHHHHhCCCCc-cEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 127 TIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 127 ~~~~Sk~~ti~~l~~~~~~~f~i~~~-~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
.+.+++.+++.+|...+++..|++++ ++.+|.-......+.+ +.+.|+..+.|++|.-|.++..
T Consensus 88 h~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i-~~~~t~~~~el~~GdIi~fQ~~ 152 (249)
T PF12436_consen 88 HVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPI-DPNQTFEKAELQDGDIICFQRA 152 (249)
T ss_dssp EEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE---SSSBHHHTT--TTEEEEEEE-
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEc-CCCCchhhcccCCCCEEEEEec
Confidence 46789999999999999999999875 7888865444455555 6788999999999988888865
No 107
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=44.24 E-value=1e+02 Score=26.42 Aligned_cols=62 Identities=10% Similarity=0.090 Sum_probs=43.3
Q ss_pred EcCCCCeeEEEecccccHHHHHHHHHHHhCCC-CccEEEEEeeCCccccccccccccccccccCCC
Q 040385 119 VMPRGECSTIRISKKETIGELHRRACSIFYLN-LEQICIWDYYGHRKHALMNDMDRTLDDANIQMD 183 (827)
Q Consensus 119 ~~~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~-~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~ 183 (827)
+++++......|...+||.+|.+.+.....-. ...+.|.--+.. ..+.+.+.||+|++|...
T Consensus 10 RlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~---k~l~~~~~Tl~eagL~~s 72 (79)
T cd01770 10 RLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPV---KELSDESLTLKEANLLNA 72 (79)
T ss_pred ECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCC---cccCCCCCcHHHCCCcCc
Confidence 35777788889999999999999998765432 345666432222 223344889999999853
No 108
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=42.88 E-value=1.7e+02 Score=26.30 Aligned_cols=66 Identities=17% Similarity=0.331 Sum_probs=47.9
Q ss_pred EEEEEEcCCCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeE
Q 040385 114 RLQLLVMPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDI 186 (827)
Q Consensus 114 ~l~~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~i 186 (827)
.|+|.- .+.+...+.+.+...++-|++.-|+.-|++.+.+|.. |.++. + ....|..++....+..|
T Consensus 22 ~LKV~g-qd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFl-FdG~r----I-~~~~TP~~L~mEd~D~I 87 (99)
T KOG1769|consen 22 NLKVKG-QDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFL-FDGQR----I-RETHTPADLEMEDGDEI 87 (99)
T ss_pred EEEEec-CCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEE-ECCcC----c-CCCCChhhhCCcCCcEE
Confidence 344432 4456678999999999999999999999999999853 33332 2 33567777777777654
No 109
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=42.74 E-value=71 Score=23.94 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=30.5
Q ss_pred CCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEE
Q 040385 122 RGECSTIRISKKETIGELHRRACSIFYLNLEQICIW 157 (827)
Q Consensus 122 ~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW 157 (827)
+.....+.++...|+.++++.++..++++++.++|+
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~ 41 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLL 41 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEE
Confidence 344567778889999999999999999888888886
No 110
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=42.27 E-value=55 Score=30.15 Aligned_cols=61 Identities=18% Similarity=0.178 Sum_probs=45.2
Q ss_pred eEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCC-------CCeEEEEEEe
Q 040385 126 STIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQM-------DQDILVEVLD 192 (827)
Q Consensus 126 ~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~-------~q~il~E~~~ 192 (827)
.....-...|+-+|++.+--+.+.++++-||| ..+ .+|++ ++||.|+++.+ .-.+=+-++.
T Consensus 14 iF~dakes~tVlelK~~iegI~k~pp~dQrL~-kd~----qvLeD-~kTL~d~g~t~~~akaq~pA~vgLa~r~ 81 (119)
T cd01788 14 IFTDAKESTTVYELKRIVEGILKRPPEDQRLY-KDD----QLLDD-GKTLGDCGFTSQTARPQAPATVGLAFRS 81 (119)
T ss_pred EEeecCCcccHHHHHHHHHHHhcCChhHheee-cCc----eeecc-cccHHHcCccccccccCCCCeEEEEEec
Confidence 44556678899999999999999999999999 221 35544 78999999943 4455566663
No 111
>smart00455 RBD Raf-like Ras-binding domain.
Probab=41.28 E-value=1.3e+02 Score=25.18 Aligned_cols=64 Identities=19% Similarity=0.278 Sum_probs=44.0
Q ss_pred cCCCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEE
Q 040385 120 MPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEV 190 (827)
Q Consensus 120 ~~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~ 190 (827)
++++....+.+-...|+.|++..+|+..++.++.+.+... +..+. + +++. ++....++.+.+|.
T Consensus 6 LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~-g~~k~--l-dl~~---~~~~l~~~el~ve~ 69 (70)
T smart00455 6 LPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLR-GEKKP--L-DLNQ---PISSLDGQELVVEE 69 (70)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEc-CCCcc--e-ecCC---ccccccCceEEEEe
Confidence 5677777888888999999999999999999988877643 21111 1 1111 23334567777774
No 112
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=40.81 E-value=89 Score=26.58 Aligned_cols=64 Identities=14% Similarity=0.329 Sum_probs=39.7
Q ss_pred EEEEEcCCCCCcCeEEEEEecCCCcHHHHHHHHHhhcCCCCCCcEEEEEEeCCceEEeccCcccccc--ccCCCCcEE
Q 040385 416 TVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLS--TIKDDDHLA 491 (827)
Q Consensus 416 ~~~~~~~~~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~d~~~~l~--~i~~~d~i~ 491 (827)
.+++....|.. ..++++...++.+|++.+++..++... ++-++ |.++ .+.|. .|. .+.+++.|+
T Consensus 3 ~I~Vk~~~G~~----~~l~v~~~~TV~~LK~~I~~~~~~~~~-~qrL~--~~Gk---~L~d~--~L~~~gi~~~~~i~ 68 (78)
T cd01804 3 NLNIHSTTGTR----FDLSVPPDETVEGLKKRISQRLKVPKE-RLALL--HRET---RLSSG--KLQDLGLGDGSKLT 68 (78)
T ss_pred EEEEEECCCCE----EEEEECCcCHHHHHHHHHHHHhCCChH-HEEEE--ECCc---CCCCC--cHHHcCCCCCCEEE
Confidence 44455555532 678889999999999999998888653 34332 4433 34443 232 455555543
No 113
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=40.30 E-value=1.2e+02 Score=26.20 Aligned_cols=45 Identities=16% Similarity=0.148 Sum_probs=31.6
Q ss_pred EEEEEEcCCCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeC
Q 040385 114 RLQLLVMPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYG 161 (827)
Q Consensus 114 ~l~~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~ 161 (827)
-++|+........-+.. .++.||+.++|..|+++...++|-.+.+
T Consensus 4 p~kv~~~~r~~k~Gv~A---~sL~eL~~K~~~~l~~~~~~~~lvL~eD 48 (78)
T PF02017_consen 4 PFKVRNHDRSVKKGVAA---SSLEELLEKACDKLQLPEEPVRLVLEED 48 (78)
T ss_dssp EEEEEETTSSCEEEEEE---SSHHHHHHHHHHHHT-SSSTCEEEETTT
T ss_pred cEEEecCCCCceEeEEc---CCHHHHHHHHHHHhCCCCcCcEEEEeCC
Confidence 35555544444444554 5899999999999999988888876543
No 114
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=40.25 E-value=1.3e+02 Score=26.11 Aligned_cols=31 Identities=10% Similarity=0.000 Sum_probs=26.1
Q ss_pred EEEEecCCCcHHHHHHHHHhhcCCCCCCcEE
Q 040385 431 YTVTVPKHGRCRDLIQVLGNICSLKQSEELK 461 (827)
Q Consensus 431 ~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~ 461 (827)
.+.+++...++.+|++.|...+|+++..+-+
T Consensus 15 ~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL 45 (84)
T cd01789 15 FEKKYSRGLTIAELKKKLELVVGTPASSMRL 45 (84)
T ss_pred eeEecCCCCcHHHHHHHHHHHHCCCccceEE
Confidence 4567899999999999999999998765444
No 115
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=39.68 E-value=1.5e+02 Score=24.93 Aligned_cols=60 Identities=18% Similarity=0.236 Sum_probs=38.4
Q ss_pred CCCCeeEEEecccccHHHHHHHHHHHhCCCCc-cEEEEE-eeCCccccccccccccccccccC
Q 040385 121 PRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWD-YYGHRKHALMNDMDRTLDDANIQ 181 (827)
Q Consensus 121 ~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~-~~RlW~-~~~~~~~~ll~~~~~tl~d~~l~ 181 (827)
.|+...++.+.+..|..+|.+.+|..++|... -+-|.- .........| +++++|.+....
T Consensus 4 lD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL-~~~k~l~~q~~~ 65 (80)
T PF09379_consen 4 LDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWL-DLDKKLKKQLKK 65 (80)
T ss_dssp SSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE--SSSBGGGSTBT
T ss_pred cCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceec-cCcccHHHHcCC
Confidence 45566789999999999999999999999754 344443 1222222333 445566555433
No 116
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=39.63 E-value=1.5e+02 Score=25.76 Aligned_cols=39 Identities=21% Similarity=0.311 Sum_probs=32.8
Q ss_pred CCCeeEEEecccccHHHHHHHHHHHhCCCC--ccEEEEEee
Q 040385 122 RGECSTIRISKKETIGELHRRACSIFYLNL--EQICIWDYY 160 (827)
Q Consensus 122 ~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~--~~~RlW~~~ 160 (827)
+..-+++.+++..|..++++.+.+.|+++. +++.|+...
T Consensus 14 ~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~ 54 (90)
T smart00314 14 GGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVL 54 (90)
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEe
Confidence 355689999999999999999999999975 467777665
No 117
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=38.10 E-value=3.2e+02 Score=25.07 Aligned_cols=76 Identities=17% Similarity=0.180 Sum_probs=48.8
Q ss_pred EeCCCCcc-ceEEEEEEcCCCCCcCeEEEEEecCCCcHHHHHHHHHhhcCC----CCCCcEEEEEEeCCceEEeccCccc
Q 040385 405 LPLQATTT-RTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSL----KQSEELKVAEIQNHSIQRFLDDPLI 479 (827)
Q Consensus 405 L~lp~~~~-~~~~~~~~~~~~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~----~~~~~l~~~e~~~~~~~~~~~d~~~ 479 (827)
|..|.+.- ......|+..|+...-..-.|+|+...+..++++.|-+...+ .++....+.++..+.-.+-+.|...
T Consensus 11 ~s~p~e~lef~gvmrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~d~~~~s~p~FALYevh~nGe~RKL~d~E~ 90 (112)
T cd01782 11 LSYPTEDLEFHGVMRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSEKFRPDMRMLSNPTYSLYEVHENGEERRLLDDEK 90 (112)
T ss_pred ecCCCcccEEeeEEEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHHHhcccccccCCcceEEEEEecCCceEEcCCcCC
Confidence 45555542 334456666666666666789999999999999999776653 2334666666665555555554333
Q ss_pred c
Q 040385 480 S 480 (827)
Q Consensus 480 ~ 480 (827)
|
T Consensus 91 P 91 (112)
T cd01782 91 P 91 (112)
T ss_pred C
Confidence 3
No 118
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=37.97 E-value=72 Score=33.82 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=28.7
Q ss_pred CCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeC
Q 040385 123 GECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYG 161 (827)
Q Consensus 123 ~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~ 161 (827)
....++.+|+..|..+|-+++.+.++++++.+|+|..+.
T Consensus 189 ~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~~~~~ 227 (249)
T PF12436_consen 189 DPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFFTVNP 227 (249)
T ss_dssp ---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE---T
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEEecc
Confidence 346789999999999999999999999999999998764
No 119
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=34.40 E-value=1.4e+02 Score=25.37 Aligned_cols=49 Identities=12% Similarity=0.213 Sum_probs=33.1
Q ss_pred EEEEEcCCCCCcCeEEEEEecCCCcHHHHHHHHHhhcCCCCCCcEEEEEEeCCc
Q 040385 416 TVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHS 469 (827)
Q Consensus 416 ~~~~~~~~~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~ 469 (827)
.+++....|.. +.+.+....++.+|++.+++..+++ .+++-++-++.++
T Consensus 4 ~i~Vk~~~G~~----~~~~v~~~~TV~~lK~~I~~~~~i~-~~~qrL~~~~~G~ 52 (80)
T cd01792 4 DLKVKMLGGNE----FLVSLRDSMTVSELKQQIAQKIGVP-AFQQRLAHLDSRE 52 (80)
T ss_pred EEEEEeCCCCE----EEEEcCCCCcHHHHHHHHHHHhCCC-HHHEEEEeccCCC
Confidence 34444444432 5567788899999999999998885 4555555445444
No 120
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=33.36 E-value=1.3e+02 Score=25.87 Aligned_cols=52 Identities=19% Similarity=0.195 Sum_probs=34.8
Q ss_pred EEEecccccHHHHHHHHHHHhC-CC-CccEEEEEeeCCccccccccccccccccc--cCCCC
Q 040385 127 TIRISKKETIGELHRRACSIFY-LN-LEQICIWDYYGHRKHALMNDMDRTLDDAN--IQMDQ 184 (827)
Q Consensus 127 ~~~~Sk~~ti~~l~~~~~~~f~-i~-~~~~RlW~~~~~~~~~ll~~~~~tl~d~~--l~~~q 184 (827)
.+.+....||.+|++++.+.++ .+ ++.-||- | ++..|.| +.||.++. +..+.
T Consensus 17 ~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLI--y---~GKiLkD-~~tL~~~~~~~~~~~ 72 (79)
T cd01790 17 TVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLI--Y---SGKLLPD-HLKLRDVLRKQDEYH 72 (79)
T ss_pred EEecCCcChHHHHHHHHHHhcCCCCChhHeEEE--E---cCeeccc-hhhHHHHhhcccCCc
Confidence 3444678999999999999884 33 4666763 3 3346655 57888874 44443
No 121
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=32.72 E-value=2e+02 Score=25.21 Aligned_cols=60 Identities=20% Similarity=0.329 Sum_probs=49.2
Q ss_pred EEEEEEcCCCCCcCeEEEEEecCCCcHHHHHHHHHhhcCCCCCCcEEEEEEeC-CceEEeccCcc
Q 040385 415 MTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQN-HSIQRFLDDPL 478 (827)
Q Consensus 415 ~~~~~~~~~~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~-~~~~~~~~d~~ 478 (827)
..+.++..||+. ..+.+....++.++++.|.......++....++|..- ..+-|.|+|..
T Consensus 3 ~vvkv~~~Dg~s----K~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE 63 (85)
T cd01787 3 QVVKVYSEDGAS----KSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHE 63 (85)
T ss_pred eEEEEEecCCCe----eEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchH
Confidence 356778888765 5688899999999999999999999899999998754 46888888753
No 122
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=31.81 E-value=73 Score=28.30 Aligned_cols=54 Identities=19% Similarity=0.220 Sum_probs=39.7
Q ss_pred eeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCC
Q 040385 125 CSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQM 182 (827)
Q Consensus 125 ~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~ 182 (827)
...+..-..+|+-+|+..+--++.=+.++-|||..... .+| +..+||.|+|+.+
T Consensus 13 tif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~e---qlL-~D~ktL~d~gfts 66 (110)
T KOG4495|consen 13 TIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTE---QLL-DDGKTLGDCGFTS 66 (110)
T ss_pred eEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHH---HHh-hccchhhhccccc
Confidence 34455667789999999888888888899999976432 344 4467888887765
No 123
>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.
Probab=31.71 E-value=1.5e+02 Score=25.43 Aligned_cols=31 Identities=19% Similarity=0.313 Sum_probs=25.4
Q ss_pred cccHHHHHHHHHHHhCCCCccEEEEEeeCCc
Q 040385 133 KETIGELHRRACSIFYLNLEQICIWDYYGHR 163 (827)
Q Consensus 133 ~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~ 163 (827)
..++.+|+.++|..|.++...++|..+.+.+
T Consensus 20 A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT 50 (77)
T cd06535 20 AKNLKELLRKGCRLLQLPCAGSRLCLYEDGT 50 (77)
T ss_pred cCCHHHHHHHHHHHhCCCCCCcEEEEecCCc
Confidence 3589999999999999998778887665543
No 124
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=31.28 E-value=1.7e+02 Score=25.19 Aligned_cols=30 Identities=17% Similarity=0.183 Sum_probs=24.9
Q ss_pred cccHHHHHHHHHHHhCCCCccEEEEEeeCC
Q 040385 133 KETIGELHRRACSIFYLNLEQICIWDYYGH 162 (827)
Q Consensus 133 ~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~ 162 (827)
..++.+|+.++|..|+++...++|..+.+.
T Consensus 20 A~sL~eL~~K~~~~l~l~~~~~~lvL~eDG 49 (78)
T cd01615 20 ASSLEELLSKACEKLKLPSAPVTLVLEEDG 49 (78)
T ss_pred cCCHHHHHHHHHHHcCCCCCCeEEEEeCCC
Confidence 348999999999999998778888766544
No 125
>KOG2463 consensus Predicted RNA-binding protein Nob1p involved in 26S proteasome assembly [Posttranslational modification, protein turnover, chaperones]
Probab=30.02 E-value=35 Score=36.98 Aligned_cols=35 Identities=20% Similarity=0.391 Sum_probs=23.5
Q ss_pred CCCCccCcccceeEEEEEeeecCCeEEEEEe-eeeec
Q 040385 700 MWYCPQCKERRQASKKLDLWRLPEVLVIHLK-RFSYS 735 (827)
Q Consensus 700 ~~~C~~C~~~~~a~k~~~i~~lP~vLiihLk-RF~~~ 735 (827)
.-+|++|+.++-..-...+-.= --+..|+| ||.++
T Consensus 257 k~FCp~CG~~TL~K~aVsv~~d-G~~~~h~k~r~~~n 292 (376)
T KOG2463|consen 257 KDFCPSCGHKTLTKCAVSVDED-GNGQTHFKKRFQWN 292 (376)
T ss_pred hhcccccCCCeeeEEEEEecCC-CceeEEeecccccc
Confidence 3699999987433333334333 56888998 99976
No 126
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=29.81 E-value=2.2e+02 Score=23.71 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=22.4
Q ss_pred EEEEEecCCCcHHHHHHHHHhhcCC
Q 040385 430 TYTVTVPKHGRCRDLIQVLGNICSL 454 (827)
Q Consensus 430 ~~~v~~~k~~~~~~l~~~l~~~~~~ 454 (827)
.+.+.+....++.+|++.+....|+
T Consensus 12 ~~~l~v~~~~TV~~lK~~i~~~~~i 36 (77)
T cd01805 12 TFPIEVDPDDTVAELKEKIEEEKGC 36 (77)
T ss_pred EEEEEECCCCcHHHHHHHHHHhhCC
Confidence 4678889999999999999999988
No 127
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=29.77 E-value=3.4e+02 Score=27.05 Aligned_cols=66 Identities=18% Similarity=0.190 Sum_probs=43.9
Q ss_pred ceEEEEEEcCCCCeeEEEecccccHHHHHHHHHHHhCCCC-ccEEEEEeeCCccc-cccccccccccccc
Q 040385 112 PLRLQLLVMPRGECSTIRISKKETIGELHRRACSIFYLNL-EQICIWDYYGHRKH-ALMNDMDRTLDDAN 179 (827)
Q Consensus 112 P~~l~~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~-~~~RlW~~~~~~~~-~ll~~~~~tl~d~~ 179 (827)
|..++|+. .++....+.+....|+.++.+.+|+.++|.. .-+-||........ ..+ +..+++.+..
T Consensus 3 ~~~~~V~l-~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l-~~~~~l~~~~ 70 (207)
T smart00295 3 PRVLKVYL-LDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWL-DPAKTLLDQD 70 (207)
T ss_pred cEEEEEEe-cCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeC-CCccCHHHhc
Confidence 45566654 4556678899999999999999999999964 35677755543322 122 3345555543
No 128
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=29.51 E-value=45 Score=27.57 Aligned_cols=34 Identities=21% Similarity=0.512 Sum_probs=20.8
Q ss_pred CCCccCcccceeEEEEEe--eecCCeEEEEEeeeee
Q 040385 701 WYCPQCKERRQASKKLDL--WRLPEVLVIHLKRFSY 734 (827)
Q Consensus 701 ~~C~~C~~~~~a~k~~~i--~~lP~vLiihLkRF~~ 734 (827)
|.|++|+...-..+.+.. ..+-.++=|+.+||..
T Consensus 1 y~C~KCg~~~~e~~~v~~tgg~~skiFdvq~~~f~~ 36 (64)
T PF09855_consen 1 YKCPKCGNEEYESGEVRATGGGLSKIFDVQNKKFTT 36 (64)
T ss_pred CCCCCCCCcceecceEEccCCeeEEEEEecCcEEEE
Confidence 789999986544444332 2334456667777653
No 129
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=29.04 E-value=1.1e+02 Score=26.79 Aligned_cols=41 Identities=15% Similarity=0.200 Sum_probs=33.5
Q ss_pred EEEEEEcCCCCeeEEEecccccHHHHHHHHHHHhCCCCccEE
Q 040385 114 RLQLLVMPRGECSTIRISKKETIGELHRRACSIFYLNLEQIC 155 (827)
Q Consensus 114 ~l~~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~R 155 (827)
.|++. ++++....+.+-+.++..++.+.++..++++.+-++
T Consensus 3 ~L~V~-Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~ 43 (87)
T cd01777 3 ELRIA-LPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQN 43 (87)
T ss_pred EEEEE-ccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHh
Confidence 34443 567788889999999999999999999999976543
No 130
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=28.80 E-value=25 Score=42.70 Aligned_cols=87 Identities=20% Similarity=0.310 Sum_probs=54.6
Q ss_pred EEEeeecCCeEEEEEeeeeeccccccee--eeeEeccccccccccccccCCCCccceEEEEEEEEeecCCCcceEEEEEE
Q 040385 715 KLDLWRLPEVLVIHLKRFSYSRSMKHKL--ETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIK 792 (827)
Q Consensus 715 ~~~i~~lP~vLiihLkRF~~~~~~~~Ki--~~~V~fPl~~Ldl~~~~~~~~~~~~~~Y~L~aVi~H~G~~~~GHY~a~~k 792 (827)
...|.++|+|.+|.|. +......|. .+...+- .++|++..-... ......|+|.+++.-... +++|.|++.
T Consensus 675 ~h~is~~P~vftIvle---wEk~ETe~eI~~T~~aL~-teidis~~y~~g-~ep~t~yrLVSmv~~~e~--~~~~~C~Ay 747 (806)
T KOG1887|consen 675 HHILSPCPPVFTIVLE---WEKSETEKEISETTKALA-TEIDISRLYREG-LEPNTKYRLVSMVGNHEE--GEEYICFAY 747 (806)
T ss_pred hhhcCCCCCeeEeeee---hhcccchHHHHHHHHHHH-hhhhHHHHhhhc-cCcCceeEEEEEeeeccc--cceEEEeec
Confidence 3457889999999543 322222222 1222333 355665543322 226688999999966543 899999998
Q ss_pred eCCCCCEE--EEeCCcceec
Q 040385 793 LLDENRWY--NFDDSHISPI 810 (827)
Q Consensus 793 ~~~~~~W~--~fnD~~V~~~ 810 (827)
..+.|+ ..+|..+..+
T Consensus 748 --e~Nrwvs~r~~~~~~e~i 765 (806)
T KOG1887|consen 748 --EPNRWVSLRHEDSQGEVV 765 (806)
T ss_pred --cCCcchhhHHHHHHhhhc
Confidence 467777 8888876655
No 131
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=28.61 E-value=2e+02 Score=24.75 Aligned_cols=30 Identities=7% Similarity=0.022 Sum_probs=24.6
Q ss_pred ccHHHHHHHHHHHhCCCCccEEEEEeeCCc
Q 040385 134 ETIGELHRRACSIFYLNLEQICIWDYYGHR 163 (827)
Q Consensus 134 ~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~ 163 (827)
.++.+|+.++|..|+++...++|-.+.+.+
T Consensus 21 ~sL~EL~~K~~~~l~~~~~~~~lvL~eDGT 50 (78)
T cd06539 21 SSLQELISKTLDALVITSGLVTLVLEEDGT 50 (78)
T ss_pred cCHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence 489999999999999987778887665443
No 132
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=28.31 E-value=71 Score=35.17 Aligned_cols=30 Identities=27% Similarity=0.337 Sum_probs=19.3
Q ss_pred CCccCcccCCCccchhhHHHhhhCcHH-HHH
Q 040385 273 VGLTGLLNLGNTCFMNSAIQCLVHTPE-FAR 302 (827)
Q Consensus 273 ~g~~GL~NlGNTCYmNSvLQcL~~~~~-l~~ 302 (827)
.|..=|.=.-|.||+||++=.|-++.. |+-
T Consensus 100 ~g~~~Lkq~dNNCwVna~~~~LQ~~~~~f~~ 130 (320)
T PF08715_consen 100 NGFRVLKQSDNNCWVNAACLQLQALKIKFKS 130 (320)
T ss_dssp TTEEEE---TTTHHHHHHHHHHTTST--BSS
T ss_pred CCEEEEEecCCCcHHHHHHHHHHhcCCccCC
Confidence 356667777899999999877766654 443
No 133
>cd01783 DAGK_delta_RA Ubiquitin-like domain of Diacylgylcerol kinase (DAGK). DAGK_delta_RA Diacylgylcerol kinase (DAGK) phosphorylates the second messenger diacylglycerol to phosphatidic acid as part of a protein kinase C pathway. Nine mammalian DAGK isotypes have been identified, which are classified into five subgroups according to their domain architecture and the DAGK-delta and -theta isozymes, which fall into one such group, contain an RA (Ras-associated) domain. DAGKs also contain a conserved catalytic domain (DAGKc), an assesory domain (DAGKa), and an array of conserved motifs that are likely to play a role in lipid-protein and protein-protein interactions in various DAG/PA-dependent signalling pathways.
Probab=28.10 E-value=1.3e+02 Score=27.05 Aligned_cols=49 Identities=24% Similarity=0.378 Sum_probs=36.0
Q ss_pred eEEEeceEEEEEEcCCCCeeEEEecccccHHHHHHHHHHHhCCCC---ccEEEEEe
Q 040385 107 AVEVYPLRLQLLVMPRGECSTIRISKKETIGELHRRACSIFYLNL---EQICIWDY 159 (827)
Q Consensus 107 ~vElyP~~l~~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~---~~~RlW~~ 159 (827)
.|-+||=.|+. ...-.++.+++..|+.+++..+.+.||+.. ++++|=..
T Consensus 4 ~iKVY~G~L~~----~~~y~sv~V~~~tt~~dvv~eaL~kfGl~~~~~~~y~LvEV 55 (97)
T cd01783 4 VVKVYPGWLRV----GVAYVSIRVNKDTTVQDVILEVLPLFGLQAECPESFRLIEV 55 (97)
T ss_pred eEEEecCcccc----CcceEEEEecccchHHHHHHHHHHHhCcccCCccccEEEEE
Confidence 36677766653 222358899999999999999999999974 45655433
No 134
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=27.81 E-value=2.3e+02 Score=23.99 Aligned_cols=30 Identities=13% Similarity=-0.059 Sum_probs=25.0
Q ss_pred EEEEEecCCCcHHHHHHHHHhhcCCCCCCc
Q 040385 430 TYTVTVPKHGRCRDLIQVLGNICSLKQSEE 459 (827)
Q Consensus 430 ~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~ 459 (827)
...+.+....++.+|++.+....|+++..+
T Consensus 14 t~~l~v~~~~TV~~lK~kI~~~~gip~~~Q 43 (75)
T cd01799 14 TIWLTVRPDMTVAQLKDKVFLDYGFPPAVQ 43 (75)
T ss_pred eEEEEECCCCcHHHHHHHHHHHHCcCHHHE
Confidence 456788889999999999999999976543
No 135
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=27.62 E-value=2.1e+02 Score=24.37 Aligned_cols=30 Identities=13% Similarity=0.141 Sum_probs=24.9
Q ss_pred cccHHHHHHHHHHHhCCCCccEEEEEeeCC
Q 040385 133 KETIGELHRRACSIFYLNLEQICIWDYYGH 162 (827)
Q Consensus 133 ~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~ 162 (827)
..++.+|+.++|..|+++...++|..+.+.
T Consensus 18 A~sL~eL~~K~~~~l~l~~~~~~l~L~eDG 47 (74)
T smart00266 18 ASSLEELLSKVCDKLALPDSPVTLVLEEDG 47 (74)
T ss_pred cCCHHHHHHHHHHHhCCCCCCcEEEEecCC
Confidence 358999999999999999778888766543
No 136
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=27.10 E-value=1.4e+02 Score=25.16 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=28.1
Q ss_pred EEEEEecCCCcHHHHHHHHHhhcCCCCCCcEEEE
Q 040385 430 TYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVA 463 (827)
Q Consensus 430 ~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~ 463 (827)
.|.+++..+.++.+|++.+....++++..+=++.
T Consensus 11 ~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~ 44 (74)
T cd01813 11 EYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLG 44 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEe
Confidence 4778899999999999999999999876544443
No 137
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=26.79 E-value=27 Score=36.79 Aligned_cols=30 Identities=13% Similarity=0.247 Sum_probs=25.6
Q ss_pred hhccCCCceeecccceEeeeEecCCCCCee
Q 040385 365 HIARNDSIIVDVCQGQYKSTLVCPVCNKVS 394 (827)
Q Consensus 365 ~~~~~~s~I~~lF~G~~~s~l~C~~C~~~s 394 (827)
.+-+.++.|.++|.-.+.=.-.|..||+..
T Consensus 115 LLLk~d~~~E~lF~~sf~WeFeC~~Cg~~~ 144 (275)
T PF15499_consen 115 LLLKLDPWIEKLFLYSFSWEFECSQCGHKY 144 (275)
T ss_pred HHHhcchHHHhHhheeeEEEEEccccCChh
Confidence 345667889999999999999999999874
No 138
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=26.19 E-value=2.2e+02 Score=22.67 Aligned_cols=55 Identities=18% Similarity=0.246 Sum_probs=34.4
Q ss_pred EEEEecCCCcHHHHHHHHHhhcCCCCCCcEEEEEEeCCceEEeccCcccccc--ccCCCCcEEE
Q 040385 431 YTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLS--TIKDDDHLAA 492 (827)
Q Consensus 431 ~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~d~~~~l~--~i~~~d~i~~ 492 (827)
+.+.++.+.++.+|++.+++.++++... +.+ +++.+ .+.| ...+. .+.+++.|++
T Consensus 10 ~~~~~~~~~ti~~lK~~i~~~~~~~~~~-~~l--~~~g~---~l~d-~~~l~~~~v~~~~~i~v 66 (69)
T cd01769 10 FELEVSPDDTVAELKAKIAAKEGVPPEQ-QRL--IYAGK---ILKD-DKTLSDYGIQDGSTLHL 66 (69)
T ss_pred EEEEECCCChHHHHHHHHHHHHCcChHH-EEE--EECCc---CCCC-cCCHHHCCCCCCCEEEE
Confidence 4577888999999999999999986543 333 44443 3333 23332 3455555543
No 139
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=26.12 E-value=1.1e+02 Score=35.56 Aligned_cols=72 Identities=25% Similarity=0.413 Sum_probs=59.7
Q ss_pred CCCCccceEEEEEEcCCCCCcCeEEEEEecCCCcHHHHHHHHHhhcCCCCCCcEEEEEEeCC-ceEEeccCcccccc
Q 040385 407 LQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNH-SIQRFLDDPLISLS 482 (827)
Q Consensus 407 lp~~~~~~~~~~~~~~~~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~-~~~~~~~d~~~~l~ 482 (827)
++....+...|.+|..||.. ..+.|+...++.|+++.|....-...+++.-++|.+-+ .|.|.|+|....+.
T Consensus 181 lk~a~vrklvVKvfseDgas----ksL~Vder~tardV~~lL~eKnH~~~d~~W~LvEh~P~L~iER~fEDHElVVE 253 (622)
T KOG3751|consen 181 LKEAKVRKLVVKVFSEDGAS----KSLLVDERMTARDVCQLLAEKNHCADDEDWCLVEHYPHLQIERVFEDHELVVE 253 (622)
T ss_pred cccccccceeEEEEccCCce----eeEeecccccHHHHHHHHHHhhhhhcccceeeeeecchhhhhhhhhhHHHHHH
Confidence 45566778889999999975 46888999999999999998877777889999999987 68899998765443
No 140
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=25.85 E-value=3.3e+02 Score=26.87 Aligned_cols=55 Identities=25% Similarity=0.362 Sum_probs=40.9
Q ss_pred EEEEEcCCCCCcCeEEEEEecCCCcHHHHHHHHHhhcCCCCCCcEEEEEEeCCce
Q 040385 416 TVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSI 470 (827)
Q Consensus 416 ~~~~~~~~~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~ 470 (827)
.|.+-..+|...|..+.+.++...++.+|...|....++.....+++.-..+..+
T Consensus 2 ~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l 56 (162)
T PF13019_consen 2 NVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQL 56 (162)
T ss_pred eEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCee
Confidence 3555566776778888999999999999999999999887666555544444343
No 141
>cd01785 PDZ_GEF_RA Ubiquitin-like domain of PDZ_GEF_RA. PDZ_GEF_RA PDZ-GEF is a guanine nucleotide exchange factor (GEF) characterised by the presence of a PSD-95/DlgA/ZO-1 (PDZ) domain, a Ras-association (RA) domain and a region related to a cyclic nucleotide binding domain (RCBD). RA-GEF exchanges nucleotides of both Rap1 and Rap2, but is also thought to mediate cAMP-induced Ras activation. The RA domain interacts with Rap1 and also contributes to the membrane localization of RA-GEF. This domain may function in a positive feedback loop.
Probab=25.17 E-value=2.9e+02 Score=23.83 Aligned_cols=37 Identities=22% Similarity=0.195 Sum_probs=30.1
Q ss_pred EEEEEEcCCCCeeEEEecccccHHHHHHHHHHHhCCCC
Q 040385 114 RLQLLVMPRGECSTIRISKKETIGELHRRACSIFYLNL 151 (827)
Q Consensus 114 ~l~~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~ 151 (827)
.++++.. |..-+.+.++|.-|..++...+.+.|+|..
T Consensus 4 Vlkvyka-DQt~kyili~K~Tta~evv~lal~eFgi~~ 40 (85)
T cd01785 4 VLKVYKA-DQTCKYLLIYKETTAHEVVMLALQEFGITA 40 (85)
T ss_pred eEEEEec-CcceeEEEEeccccHHHHHHHHHHHhCCCC
Confidence 4566654 445578899999999999999999999974
No 142
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=24.31 E-value=1.3e+02 Score=24.41 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=26.0
Q ss_pred EEEEEecCCCcHHHHHHHHHhhcCCCCCCc
Q 040385 430 TYTVTVPKHGRCRDLIQVLGNICSLKQSEE 459 (827)
Q Consensus 430 ~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~ 459 (827)
.+.++++.+.++.+|++.++...+++....
T Consensus 7 ~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~ 36 (69)
T PF00240_consen 7 TFTLEVDPDDTVADLKQKIAEETGIPPEQQ 36 (69)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHTSTGGGE
T ss_pred EEEEEECCCCCHHHhhhhcccccccccccc
Confidence 578899999999999999999999876443
No 143
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=24.28 E-value=1.9e+02 Score=23.87 Aligned_cols=38 Identities=8% Similarity=0.167 Sum_probs=28.8
Q ss_pred EEEEcCCCCCcCeEEEEEecCCCcHHHHHHHHHhhcCCCCCC
Q 040385 417 VTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSE 458 (827)
Q Consensus 417 ~~~~~~~~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~ 458 (827)
+++...+|.. ..+++....++.+|++.++...+++..+
T Consensus 3 i~v~~~~g~~----~~~~v~~~~tv~~lK~~i~~~~g~~~~~ 40 (76)
T cd01806 3 IKVKTLTGKE----IEIDIEPTDKVERIKERVEEKEGIPPQQ 40 (76)
T ss_pred EEEEeCCCCE----EEEEECCCCCHHHHHHHHhHhhCCChhh
Confidence 4455555543 4578889999999999999999987654
No 144
>PF00770 Peptidase_C5: Adenovirus endoprotease; InterPro: IPR000855 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine aminopeptidases belong to the peptidase family C5 (adenain family, clan CE). Several adenovirus proteins are synthesised as precursors, requiring processing by a protease before the virion is assembled [, ]. Until recently, the adenovirus endopeptidase was classified as a serine protease, having been reported to be inhibited by serine protease inhibitors [, ]. However, it has since been shown to be inhibited by cysteine protease inhibitors, and the catalytic residues are believed to be His-54 and Cys-104 [, ].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1NLN_A 1AVP_A.
Probab=24.28 E-value=1e+02 Score=30.46 Aligned_cols=32 Identities=28% Similarity=0.353 Sum_probs=22.8
Q ss_pred EEEEEeec-CCCcceEEEEEEeCCCCCEEEEeC
Q 040385 773 YALTNHYG-GMGSGHYTAHIKLLDENRWYNFDD 804 (827)
Q Consensus 773 ~aVi~H~G-~~~~GHY~a~~k~~~~~~W~~fnD 804 (827)
.|+||--| ..+|=|+.|++-+|...+-|.||-
T Consensus 21 cAIVNT~~retGGvHWlA~Aw~P~s~t~YmFDP 53 (183)
T PF00770_consen 21 CAIVNTGGRETGGVHWLAFAWDPRSRTFYMFDP 53 (183)
T ss_dssp EEEEESS-TTT--S-EEEEEEETTTTEEEEE-T
T ss_pred eEEEecCCcccCceeEEEEEecCCcceEEEeCC
Confidence 57777666 566779999999999999999985
No 145
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=23.18 E-value=90 Score=30.98 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=23.8
Q ss_pred eeeccceEEEeecCCCCCHHHHHHHHHHHhCC
Q 040385 526 KAYGTPLVSSISRDDVISSGKIQSTVQRMLSP 557 (827)
Q Consensus 526 ~~~g~P~~~~~~~~~~~s~~~i~~~v~~~l~~ 557 (827)
..||+||||++. ..+..+|...+.+++..
T Consensus 110 ~kFGfpFii~v~---g~s~~~IL~~l~~Rl~n 138 (166)
T PRK13798 110 EKFGFVFLICAT---GRSADEMLAALQQRLHN 138 (166)
T ss_pred HhCCCeEEEeeC---CCCHHHHHHHHHHHhcC
Confidence 569999999995 34788899998888764
No 146
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=22.60 E-value=2e+02 Score=24.17 Aligned_cols=36 Identities=14% Similarity=0.303 Sum_probs=30.4
Q ss_pred CCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEE
Q 040385 122 RGECSTIRISKKETIGELHRRACSIFYLNLEQICIW 157 (827)
Q Consensus 122 ~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW 157 (827)
.+....+.+++..++.+|..++++.|++..+.++|.
T Consensus 9 ~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~ 44 (81)
T smart00666 9 GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLK 44 (81)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEE
Confidence 455677888889999999999999999987777774
No 147
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=22.43 E-value=4.7e+02 Score=24.05 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=31.2
Q ss_pred eeEEEecccccHHHHHHHHHHHhCCC-----CccEEEEEeeC
Q 040385 125 CSTIRISKKETIGELHRRACSIFYLN-----LEQICIWDYYG 161 (827)
Q Consensus 125 ~~~~~~Sk~~ti~~l~~~~~~~f~i~-----~~~~RlW~~~~ 161 (827)
.+.+++|...|..++++.+.+.|.++ ..++-||.+..
T Consensus 37 tK~VrVsS~~tt~eVI~~LLeKFk~d~~~~s~p~FALYevh~ 78 (112)
T cd01782 37 TKCIRVSSTATTRDVIDTLSEKFRPDMRMLSNPTYSLYEVHE 78 (112)
T ss_pred EEEEEEecCCCHHHHHHHHHHHhcccccccCCcceEEEEEec
Confidence 36789999999999999999999965 45788887764
No 148
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=22.19 E-value=97 Score=30.46 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=24.0
Q ss_pred eeeccceEEEeecCCCCCHHHHHHHHHHHhCC
Q 040385 526 KAYGTPLVSSISRDDVISSGKIQSTVQRMLSP 557 (827)
Q Consensus 526 ~~~g~P~~~~~~~~~~~s~~~i~~~v~~~l~~ 557 (827)
..||+||||++. ..+..+|...+.+++..
T Consensus 105 ~kFGfpFii~v~---g~s~~~IL~~l~~Rl~n 133 (158)
T TIGR03180 105 EKFGRIFLIRAA---GRSAEEMLDALQARLPN 133 (158)
T ss_pred HHCCCeEEEeeC---CCCHHHHHHHHHHHhCC
Confidence 569999999995 46788999988888764
No 149
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=21.65 E-value=1.4e+02 Score=24.44 Aligned_cols=29 Identities=10% Similarity=0.320 Sum_probs=24.8
Q ss_pred EEEEecCCCcHHHHHHHHHhhcCCCCCCc
Q 040385 431 YTVTVPKHGRCRDLIQVLGNICSLKQSEE 459 (827)
Q Consensus 431 ~~v~~~k~~~~~~l~~~l~~~~~~~~~~~ 459 (827)
+.++++.+.++.+|++.++..+|+++...
T Consensus 12 ~~i~v~~~~tv~~lK~~i~~~~gi~~~~q 40 (71)
T cd01812 12 HDLSISSQATFGDLKKMLAPVTGVEPRDQ 40 (71)
T ss_pred EEEEECCCCcHHHHHHHHHHhhCCChHHe
Confidence 56888999999999999999999976443
No 150
>TIGR03164 UHCUDC OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model.
Probab=21.52 E-value=1e+02 Score=30.27 Aligned_cols=29 Identities=14% Similarity=0.312 Sum_probs=23.8
Q ss_pred eeeccceEEEeecCCCCCHHHHHHHHHHHhCC
Q 040385 526 KAYGTPLVSSISRDDVISSGKIQSTVQRMLSP 557 (827)
Q Consensus 526 ~~~g~P~~~~~~~~~~~s~~~i~~~v~~~l~~ 557 (827)
..||+||||++. ..+..+|...+.+++..
T Consensus 105 ~kFGfpFvi~v~---g~~~~~Il~~l~~Rl~n 133 (157)
T TIGR03164 105 ARFGFPFIMAVK---GKTKQSILAAFEARLNN 133 (157)
T ss_pred HHCCCeeEEeeC---CCCHHHHHHHHHHHHCC
Confidence 569999999996 34788999988888764
No 151
>cd01784 rasfadin_RA Ubiquitin-like domain of Rasfadin. rasfadin_RA Rasfadin (RASSF2) belongs to a family of Ras effectors/tumor suppressors that includes RASSF1 and NORE1. RASSF2 binds directly to K-Ras in a GTP-dependent manner via its RA (RAS-associated) domain. RASSF2 promotes apoptosis and cell cycle arrest and is frequently down-regulated in lung tumor cell lines
Probab=21.32 E-value=2.7e+02 Score=24.50 Aligned_cols=39 Identities=15% Similarity=0.267 Sum_probs=33.3
Q ss_pred CCeeEEEecccccHHHHHHHHHHHhCCC--CccEEEEEeeC
Q 040385 123 GECSTIRISKKETIGELHRRACSIFYLN--LEQICIWDYYG 161 (827)
Q Consensus 123 ~~~~~~~~Sk~~ti~~l~~~~~~~f~i~--~~~~RlW~~~~ 161 (827)
++...+.+|...|..++++.+.+.|.+. ++++-||....
T Consensus 12 gs~~~v~VsS~~tt~eVI~~LL~KFkv~~~p~~FALy~vh~ 52 (87)
T cd01784 12 GSVTNVRINSTMTTPQVLKLLLNKFKIENSAEEFALYIVHT 52 (87)
T ss_pred CceeEEEEecCCCHHHHHHHHHHhccccCCHHHeEEEEEee
Confidence 5667899999999999999999999987 45788887653
No 152
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=21.24 E-value=56 Score=19.77 Aligned_cols=14 Identities=36% Similarity=1.032 Sum_probs=10.5
Q ss_pred EEEeCCCCCEEEEeCC
Q 040385 790 HIKLLDENRWYNFDDS 805 (827)
Q Consensus 790 ~~k~~~~~~W~~fnD~ 805 (827)
+++ .++.||.|++.
T Consensus 3 W~~--~~~~wYy~~~~ 16 (19)
T PF01473_consen 3 WVQ--DNGNWYYFDSD 16 (19)
T ss_dssp EEE--ETTEEEEETTT
T ss_pred CEE--ECCEEEEeCCC
Confidence 555 37899999875
No 153
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=21.00 E-value=1.3e+02 Score=37.84 Aligned_cols=61 Identities=18% Similarity=0.251 Sum_probs=47.9
Q ss_pred CCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEE
Q 040385 122 RGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVE 189 (827)
Q Consensus 122 ~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E 189 (827)
|....++.|--..||++|++.++...+|+.++=||- | .+..|.+ +++++++++ +|+.|=+-
T Consensus 11 d~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i--~---~grvl~~-~k~vq~~~v-dgk~~hlv 71 (1143)
T KOG4248|consen 11 DSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLI--Y---QGRVLQD-DKKVQEYNV-DGKVIHLV 71 (1143)
T ss_pred ccceeEEEechHHHHHHHHHHHHHhcccccccceee--e---cceeecc-chhhhhccC-CCeEEEee
Confidence 445578899999999999999999999999887864 3 2345544 789999999 78866443
No 154
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=20.83 E-value=1.9e+02 Score=23.82 Aligned_cols=28 Identities=7% Similarity=0.101 Sum_probs=23.7
Q ss_pred EEEEecCCCcHHHHHHHHHhhcCCCCCC
Q 040385 431 YTVTVPKHGRCRDLIQVLGNICSLKQSE 458 (827)
Q Consensus 431 ~~v~~~k~~~~~~l~~~l~~~~~~~~~~ 458 (827)
+.+.++...++.+|++.++..++++..+
T Consensus 13 ~~~~v~~~~tV~~lK~~i~~~~g~~~~~ 40 (76)
T cd01803 13 ITLEVEPSDTIENVKAKIQDKEGIPPDQ 40 (76)
T ss_pred EEEEECCcCcHHHHHHHHHHHhCCCHHH
Confidence 4678889999999999999999986533
No 155
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=20.22 E-value=1.7e+02 Score=25.28 Aligned_cols=33 Identities=6% Similarity=0.014 Sum_probs=29.1
Q ss_pred EEEecccccHHHHHHHHHHHhCCCCccEEEEEe
Q 040385 127 TIRISKKETIGELHRRACSIFYLNLEQICIWDY 159 (827)
Q Consensus 127 ~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~ 159 (827)
.+.+++...+.+|...+++.|.+.++.+.|+-.
T Consensus 10 ai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~ 42 (78)
T cd06411 10 ALRAPRGADVSSLRALLSQALPQQAQRGQLSYR 42 (78)
T ss_pred EEEccCCCCHHHHHHHHHHHhcCChhhcEEEec
Confidence 467788999999999999999999999998843
No 156
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=20.18 E-value=6.7e+02 Score=23.05 Aligned_cols=73 Identities=14% Similarity=0.330 Sum_probs=44.4
Q ss_pred eEEEEEEcCCCCeeEEEecccccHHHHHHHHHHHh----CC-C--CccEEEEEeeCCccccccccccccccccccCCCCe
Q 040385 113 LRLQLLVMPRGECSTIRISKKETIGELHRRACSIF----YL-N--LEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQD 185 (827)
Q Consensus 113 ~~l~~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~f----~i-~--~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~ 185 (827)
+.|++.+....+...+.++...|+.+|++++...- .. + ...+||- + .+.+|.+ +.||.++.+..+..
T Consensus 3 i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI--~---~GriL~d-~~tL~~~~~~~~~~ 76 (111)
T PF13881_consen 3 IELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLI--Y---AGRILED-NKTLSDCRLPSGET 76 (111)
T ss_dssp EEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEE--E---TTEEE-S-SSBTGGGT--TTSE
T ss_pred EEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEE--e---CCeecCC-cCcHHHhCCCCCCC
Confidence 34555555444477889999999999999998643 22 1 2467764 2 2346654 77999998876653
Q ss_pred ----EEEEEE
Q 040385 186 ----ILVEVL 191 (827)
Q Consensus 186 ----il~E~~ 191 (827)
+++-+.
T Consensus 77 ~~~~~vmHlv 86 (111)
T PF13881_consen 77 PGGPTVMHLV 86 (111)
T ss_dssp TT--EEEEEE
T ss_pred CCCCEEEEEE
Confidence 554444
Done!