Query 040385
Match_columns 827
No_of_seqs 327 out of 2233
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 12:31:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040385.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040385hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y6e_A Ubiquitin carboxyl-term 100.0 5.1E-65 1.7E-69 568.4 28.0 306 271-827 4-357 (367)
2 2gfo_A Ubiquitin carboxyl-term 100.0 3.2E-62 1.1E-66 550.8 26.3 289 271-827 58-394 (396)
3 3nhe_A Ubiquitin carboxyl-term 100.0 1.4E-59 4.9E-64 519.5 28.1 290 271-827 5-341 (348)
4 3i3t_A Ubiquitin carboxyl-term 100.0 1.6E-58 5.4E-63 512.6 24.2 288 273-827 1-349 (355)
5 1nb8_A Ubiquitin carboxyl-term 100.0 1.1E-54 3.7E-59 482.4 20.7 145 681-827 152-313 (353)
6 3mhs_A Ubiquitin carboxyl-term 100.0 5.4E-52 1.8E-56 479.0 24.1 144 681-827 320-472 (476)
7 2f1z_A Ubiquitin carboxyl-term 100.0 9.9E-52 3.4E-56 481.6 23.6 145 681-827 321-482 (522)
8 2ayn_A Ubiquitin carboxyl-term 100.0 8.6E-52 2.9E-56 467.3 21.9 140 681-827 195-392 (404)
9 1vjv_A Ubiquitin carboxyl-term 100.0 2.1E-49 7.2E-54 449.5 20.7 141 681-827 187-412 (415)
10 3ihp_A Ubiquitin carboxyl-term 100.0 7.9E-48 2.7E-52 467.7 22.3 141 679-827 545-851 (854)
11 3jyu_A Ubiquitin carboxyl-term 100.0 2.1E-35 7.2E-40 305.7 17.3 182 1-203 43-229 (231)
12 4a3p_A Ubiquitin carboxyl-term 100.0 4.2E-35 1.4E-39 300.8 17.0 178 1-202 34-216 (217)
13 2vhf_A Ubiquitin carboxyl-term 99.8 2.4E-20 8.1E-25 200.5 13.9 79 718-805 163-309 (374)
14 1w6v_A Ubiquitin carboxyl-term 99.7 1.7E-18 5.7E-23 164.7 8.2 80 1-98 58-140 (141)
15 2ylm_A Ubiquitin carboxyl-term 99.3 1.7E-10 5.7E-15 133.1 23.5 296 127-556 150-475 (530)
16 3plu_A Ubiquitin-like modifier 95.1 0.1 3.4E-06 45.1 8.9 74 108-187 15-89 (93)
17 2kjr_A CG11242; UBL, ubiquitin 94.9 0.12 4.3E-06 44.9 9.1 65 125-189 29-93 (95)
18 1wjn_A Tubulin-folding protein 94.5 0.19 6.6E-06 43.7 9.5 69 123-191 22-92 (97)
19 4dbg_A Ranbp-type and C3HC4-ty 94.2 0.17 5.9E-06 44.7 8.4 76 108-189 15-97 (105)
20 2kj6_A Tubulin folding cofacto 94.0 0.24 8.4E-06 43.2 9.0 64 125-189 28-93 (97)
21 3phx_B Ubiquitin-like protein 93.5 0.51 1.7E-05 39.0 9.9 64 122-191 13-76 (79)
22 4b6w_A Tubulin-specific chaper 93.4 0.26 8.8E-06 42.0 7.9 63 125-188 16-80 (86)
23 3v6c_B Ubiquitin; structural g 93.3 0.25 8.6E-06 42.3 7.9 63 122-190 26-88 (91)
24 3a9j_A Ubiquitin; protein comp 93.3 0.39 1.3E-05 39.1 8.8 64 122-191 9-72 (76)
25 3n3k_B Ubiquitin; hydrolase, p 93.3 0.27 9.2E-06 41.2 8.0 63 123-191 13-75 (85)
26 2bwf_A Ubiquitin-like protein 93.1 0.43 1.5E-05 39.0 8.8 62 122-189 12-73 (77)
27 4dwf_A HLA-B-associated transc 92.9 0.46 1.6E-05 40.4 9.0 63 122-191 14-76 (90)
28 2kan_A Uncharacterized protein 92.8 0.37 1.3E-05 41.7 8.3 62 125-191 26-87 (94)
29 3k9o_B Ubiquitin, UBB+1; E2-25 92.6 0.49 1.7E-05 40.8 8.8 64 122-191 10-73 (96)
30 3dbh_I NEDD8; cell cycle, acti 92.6 0.43 1.5E-05 40.3 8.3 64 122-191 21-84 (88)
31 4eew_A Large proline-rich prot 92.5 0.56 1.9E-05 39.6 8.9 60 122-188 26-85 (88)
32 3mtn_B UBA80, ubcep1, ubiquiti 92.5 0.43 1.5E-05 39.9 8.1 64 122-191 12-75 (85)
33 1wh3_A 59 kDa 2'-5'-oligoadeny 92.5 0.34 1.2E-05 40.9 7.5 63 123-191 17-79 (87)
34 1ndd_A NEDD8, protein (ubiquit 92.4 0.64 2.2E-05 37.7 9.0 64 122-191 9-72 (76)
35 1yqb_A Ubiquilin 3; structural 92.4 0.51 1.7E-05 41.3 8.7 61 125-191 33-93 (100)
36 2daf_A FLJ35834 protein; hypot 92.2 0.62 2.1E-05 41.8 9.0 76 111-192 14-89 (118)
37 1sif_A Ubiquitin; hydrophobic 92.2 0.45 1.5E-05 40.4 8.0 64 122-191 18-81 (88)
38 2klc_A Ubiquilin-1; ubiquitin- 92.2 0.61 2.1E-05 40.8 9.0 63 123-191 34-96 (101)
39 1t0y_A Tubulin folding cofacto 92.1 0.57 2E-05 42.6 9.0 66 125-190 19-85 (122)
40 1v6e_A Cytoskeleton-associated 92.1 0.44 1.5E-05 41.2 7.9 65 125-189 20-85 (95)
41 4fbj_B NEDD8; effector-HOST ta 92.1 0.44 1.5E-05 40.5 7.7 64 122-191 9-72 (88)
42 1wx7_A Ubiquilin 3; ubiquitin- 92.0 0.54 1.9E-05 41.5 8.5 60 126-191 29-88 (106)
43 1yx5_B Ubiquitin; proteasome, 91.9 0.77 2.6E-05 39.8 9.2 64 123-192 10-73 (98)
44 1v5o_A 1700011N24RIK protein; 91.8 0.46 1.6E-05 41.7 7.7 63 124-191 22-84 (102)
45 2kd0_A LRR repeats and ubiquit 91.8 0.54 1.8E-05 39.8 7.8 61 123-189 21-81 (85)
46 1j8c_A Ubiquitin-like protein 91.7 0.74 2.5E-05 42.0 9.2 63 123-191 41-103 (125)
47 2faz_A Ubiquitin-like containi 91.5 1.2 4.2E-05 36.4 9.7 59 127-191 17-76 (78)
48 2hj8_A Interferon-induced 17 k 91.5 0.85 2.9E-05 38.7 8.9 63 123-191 14-76 (88)
49 3q3f_A Ribonuclease/ubiquitin 91.4 0.76 2.6E-05 45.1 9.5 76 109-191 102-177 (189)
50 1wxv_A BAG-family molecular ch 91.4 0.57 1.9E-05 40.1 7.7 64 123-191 16-84 (92)
51 2l7r_A Ubiquitin-like protein 91.2 0.41 1.4E-05 41.2 6.6 63 123-191 27-89 (93)
52 4hcn_B Polyubiquitin, ubiquiti 91.1 0.58 2E-05 40.7 7.5 64 122-191 31-94 (98)
53 2wyq_A HHR23A, UV excision rep 90.9 1.2 4E-05 37.2 9.1 63 123-191 15-80 (85)
54 2dzi_A Ubiquitin-like protein 90.8 0.87 3E-05 37.6 8.1 61 123-189 17-77 (81)
55 3vdz_A Ubiquitin-40S ribosomal 90.8 0.99 3.4E-05 40.2 8.9 64 122-191 44-107 (111)
56 2io0_B Small ubiquitin-related 90.7 1.2 4E-05 38.3 8.9 65 121-191 13-77 (91)
57 1wy8_A NP95-like ring finger p 90.7 1.4 4.8E-05 37.2 9.5 62 124-191 19-81 (89)
58 2ojr_A Ubiquitin; lanthide-bin 90.7 1 3.5E-05 40.1 9.0 63 123-191 45-107 (111)
59 1wju_A NEDD8 ultimate buster-1 90.6 0.64 2.2E-05 40.7 7.3 60 123-188 29-88 (100)
60 2kk8_A Uncharacterized protein 90.6 0.85 2.9E-05 38.4 7.9 62 123-190 20-82 (84)
61 3m63_B Ubiquitin domain-contai 90.4 0.25 8.5E-06 43.4 4.5 62 122-189 36-97 (101)
62 3m62_B UV excision repair prot 90.3 0.55 1.9E-05 41.5 6.7 64 122-191 10-73 (106)
63 1uh6_A Ubiquitin-like 5; beta- 90.1 0.76 2.6E-05 40.2 7.2 61 123-189 38-98 (100)
64 2uyz_B Small ubiquitin-related 89.7 0.95 3.3E-05 37.3 7.4 64 122-191 12-75 (79)
65 1wx8_A Riken cDNA 4931431F19; 89.7 0.59 2E-05 40.3 6.3 63 123-191 26-88 (96)
66 1we6_A Splicing factor, putati 88.9 0.9 3.1E-05 40.4 7.1 62 124-191 41-103 (111)
67 1wyw_B Ubiquitin-like protein 88.9 1.4 4.9E-05 38.0 8.2 71 115-191 22-93 (97)
68 2fnj_B Transcription elongatio 88.3 1.5 5E-05 39.6 8.0 62 124-191 12-80 (118)
69 1we7_A SF3A1 protein; structur 88.3 1.6 5.6E-05 39.0 8.5 61 125-191 47-107 (115)
70 2io1_B Small ubiquitin-related 88.3 1.6 5.4E-05 37.7 8.0 62 122-189 16-77 (94)
71 3a4r_A Nfatc2-interacting prot 88.3 1.7 5.7E-05 36.2 7.9 56 125-186 20-75 (79)
72 3qx1_A FAS-associated factor 1 88.0 2.3 8E-05 35.7 8.8 70 120-191 14-83 (84)
73 1wm3_A Ubiquitin-like protein 88.0 1.7 5.7E-05 35.4 7.6 60 121-186 9-68 (72)
74 1v86_A DNA segment, CHR 7, way 88.0 0.77 2.6E-05 39.7 5.8 60 123-189 26-85 (95)
75 1uel_A HHR23B, UV excision rep 87.8 2.4 8.3E-05 36.3 8.9 63 123-191 10-75 (95)
76 4ajy_B Transcription elongatio 87.7 2 6.8E-05 38.7 8.4 62 124-191 12-80 (118)
77 2kdi_A Ubiquitin, vacuolar pro 87.7 2 6.9E-05 38.4 8.6 64 123-192 19-82 (114)
78 1ttn_A DC-UBP, dendritic cell- 87.6 1.2 4.1E-05 39.3 7.0 63 123-191 33-95 (106)
79 2kzr_A Ubiquitin thioesterase 86.8 0.65 2.2E-05 39.3 4.6 62 126-189 12-75 (86)
80 1wgg_A Ubiquitin carboxyl-term 86.4 1.2 4E-05 38.6 6.1 60 123-189 16-76 (96)
81 2eke_C Ubiquitin-like protein 86.4 1.8 6.2E-05 38.3 7.3 68 113-188 32-99 (106)
82 2d07_B Ubiquitin-like protein 86.2 2.7 9.1E-05 36.1 8.2 61 122-188 26-86 (93)
83 1wz0_A Ubiquitin-like protein 85.7 2.5 8.4E-05 37.2 7.8 69 113-188 25-93 (104)
84 3kyd_D Small ubiquitin-related 85.5 2.7 9.3E-05 37.6 8.1 70 113-188 39-109 (115)
85 1v2y_A 3300001G02RIK protein; 84.9 1.4 4.8E-05 38.9 5.8 65 122-191 16-95 (105)
86 3u30_A Ubiquitin, linear DI-ub 84.6 3.2 0.00011 39.7 8.9 64 122-191 29-92 (172)
87 1wf9_A NPL4 family protein; be 84.1 1 3.6E-05 39.8 4.7 66 125-191 18-94 (107)
88 3rt3_B Ubiquitin-like protein 83.5 4.4 0.00015 38.2 9.2 64 122-191 90-153 (159)
89 4a20_A Ubiquitin-like protein 83.4 5.3 0.00018 34.7 8.8 59 127-191 35-95 (98)
90 1v5t_A 8430435I17RIK protein; 83.3 1.5 5E-05 37.4 5.2 62 124-189 17-80 (90)
91 2pjh_A Protein NPL4, nuclear p 82.5 0.72 2.5E-05 38.6 2.8 65 124-189 14-78 (80)
92 2k8h_A Small ubiquitin protein 82.3 3.1 0.0001 37.0 7.0 68 113-187 27-94 (110)
93 3l0w_B Monoubiquitinated proli 81.9 5 0.00017 38.5 9.0 64 122-191 9-72 (169)
94 3rt3_B Ubiquitin-like protein 81.9 5.1 0.00018 37.6 9.0 65 122-191 11-76 (159)
95 3b08_A Polyubiquitin-C, ubiqui 81.2 5.8 0.0002 36.7 9.0 64 122-191 85-148 (152)
96 1wgd_A Homocysteine-responsive 80.9 4 0.00014 34.7 7.2 60 126-191 22-85 (93)
97 3b08_A Polyubiquitin-C, ubiqui 80.6 5.7 0.0002 36.7 8.8 63 123-191 10-72 (152)
98 2dzk_A UBX domain-containing p 78.8 7.7 0.00026 34.3 8.4 71 120-191 20-90 (109)
99 2jxx_A Nfatc2-interacting prot 78.6 6.8 0.00023 33.9 7.8 56 125-186 38-93 (97)
100 3ai5_A Yeast enhanced green fl 77.4 9.2 0.00032 40.3 9.9 81 105-191 219-305 (307)
101 2lxa_A Ubiquitin-like protein 76.5 3.9 0.00013 34.7 5.5 57 129-191 19-77 (87)
102 3pge_A SUMO-modified prolifera 76.5 5.4 0.00018 39.3 7.3 71 113-191 30-100 (200)
103 2dzm_A FAS-associated factor 1 76.4 6.4 0.00022 34.3 7.0 64 123-191 18-81 (100)
104 2cr5_A Reproduction 8; UBX dom 76.1 11 0.00039 33.2 8.7 71 119-192 29-99 (109)
105 1wia_A Hypothetical ubiquitin- 75.4 5.4 0.00018 34.0 6.3 61 123-191 17-77 (95)
106 3u30_A Ubiquitin, linear DI-ub 75.2 9.2 0.00031 36.5 8.6 64 122-191 105-168 (172)
107 3goe_A DNA repair protein RAD6 74.8 14 0.00049 30.5 8.0 61 120-186 16-77 (82)
108 3tix_A Ubiquitin-like protein 74.7 5.4 0.00019 38.9 6.6 67 113-187 58-124 (207)
109 1x1m_A Ubiquitin-like protein 74.6 5 0.00017 35.3 6.0 53 133-191 44-99 (107)
110 2kvr_A Ubiquitin carboxyl-term 71.0 4.6 0.00016 37.0 4.9 37 126-162 58-94 (130)
111 1wj4_A KIAA0794 protein; UBX d 70.3 16 0.00053 33.1 8.3 69 120-191 50-119 (124)
112 3b1l_X E3 ubiquitin-protein li 72.3 0.97 3.3E-05 36.8 0.0 61 125-191 12-72 (76)
113 2bps_A YUKD protein; ubiquitin 67.4 4.1 0.00014 34.1 3.4 67 121-188 14-80 (81)
114 3u5e_m 60S ribosomal protein L 66.6 1.2 4.1E-05 40.8 0.0 62 124-191 11-72 (128)
115 2gow_A HCG-1 protein, ubiquiti 66.0 22 0.00074 32.2 8.3 63 123-191 27-97 (125)
116 2kdb_A Homocysteine-responsive 64.2 16 0.00055 31.6 6.8 56 125-186 37-96 (99)
117 1wgh_A Ubiquitin-like 3, HCG-1 63.1 31 0.001 30.8 8.6 63 123-191 26-96 (116)
118 4b6w_A Tubulin-specific chaper 62.9 27 0.00092 29.2 7.8 62 430-492 16-80 (86)
119 2dzj_A Synaptic glycoprotein S 62.2 8.1 0.00028 32.6 4.5 58 127-188 26-85 (88)
120 3u5c_f 40S ribosomal protein S 61.4 1.7 5.8E-05 41.1 0.0 61 125-191 12-72 (152)
121 2al3_A TUG long isoform; TUG U 59.0 11 0.00039 32.0 4.7 62 121-188 17-78 (90)
122 1wgr_A Growth factor receptor- 58.8 30 0.001 30.0 7.5 65 413-481 8-73 (100)
123 3plu_A Ubiquitin-like modifier 57.3 58 0.002 27.8 8.9 71 413-494 20-92 (93)
124 1oey_A P67-PHOX, neutrophil cy 55.6 21 0.00071 29.9 5.7 35 124-158 14-48 (83)
125 3shq_A UBLCP1; phosphatase, hy 54.5 23 0.00078 37.5 7.4 65 122-189 13-77 (320)
126 1v6e_A Cytoskeleton-associated 54.3 75 0.0026 26.8 9.4 34 429-462 19-52 (95)
127 1wjn_A Tubulin-folding protein 53.8 36 0.0012 28.9 7.3 62 431-492 25-89 (97)
128 1t0y_A Tubulin folding cofacto 53.0 76 0.0026 28.2 9.6 64 429-492 18-83 (122)
129 1v5o_A 1700011N24RIK protein; 51.4 51 0.0018 28.2 8.0 56 430-491 23-80 (102)
130 1qmy_A Protease, leader protea 51.3 5.7 0.00019 36.4 1.6 23 272-294 10-32 (167)
131 4hcn_B Polyubiquitin, ubiquiti 51.0 40 0.0014 28.6 7.2 47 411-461 19-65 (98)
132 1oqy_A HHR23A, UV excision rep 50.2 23 0.0008 38.2 6.7 63 123-191 17-83 (368)
133 3mtn_B UBA80, ubcep1, ubiquiti 49.5 67 0.0023 25.9 8.2 66 415-491 4-71 (85)
134 2kjr_A CG11242; UBL, ubiquitin 49.4 67 0.0023 27.3 8.2 62 429-491 28-91 (95)
135 1se9_A Ubiquitin family; ubiqu 49.1 60 0.002 29.4 8.1 65 113-183 17-88 (126)
136 2daj_A KIAA0977 protein, COBL- 48.6 31 0.0011 28.8 5.5 63 116-181 12-75 (91)
137 2kc2_A Talin-1, F1; FERM, adhe 45.5 85 0.0029 28.4 8.5 37 120-156 18-55 (128)
138 2l76_A Nfatc2-interacting prot 45.1 62 0.0021 27.7 7.0 66 113-186 22-87 (95)
139 2kj6_A Tubulin folding cofacto 44.7 58 0.002 27.9 7.1 34 430-463 28-61 (97)
140 3k9o_B Ubiquitin, UBB+1; E2-25 40.1 88 0.003 26.0 7.6 64 417-491 4-69 (96)
141 4dbg_A Ranbp-type and C3HC4-ty 40.0 52 0.0018 28.8 6.0 86 403-495 9-99 (105)
142 1wgy_A RAP guanine nucleotide 38.6 61 0.0021 28.3 6.1 64 431-495 22-86 (104)
143 2dzi_A Ubiquitin-like protein 38.4 96 0.0033 24.7 7.3 45 414-462 7-51 (81)
144 3ivf_A Talin-1; FERM domain, c 38.3 93 0.0032 33.3 9.3 72 113-187 4-80 (371)
145 1s3s_G P47 protein; AAA ATPase 37.9 60 0.0021 29.3 6.4 65 120-188 59-124 (127)
146 3v6c_B Ubiquitin; structural g 36.3 77 0.0026 26.3 6.5 46 412-461 15-60 (91)
147 4eew_A Large proline-rich prot 36.1 66 0.0022 26.4 6.0 43 413-459 16-58 (88)
148 1yqb_A Ubiquilin 3; structural 35.7 93 0.0032 26.5 7.0 45 411-460 19-63 (100)
149 3n3k_B Ubiquitin; hydrolase, p 34.5 1.3E+02 0.0043 24.2 7.5 54 431-491 16-71 (85)
150 2ylm_A Ubiquitin carboxyl-term 34.3 35 0.0012 38.8 5.2 37 126-162 38-74 (530)
151 2dhz_A RAP guanine nucleotide 31.7 1.2E+02 0.004 27.2 7.0 65 431-495 22-92 (120)
152 3uf8_A Ubiquitin-like protein 31.5 94 0.0032 30.5 7.2 60 121-186 28-87 (209)
153 3v7o_A Minor nucleoprotein VP3 31.4 10 0.00034 37.5 0.0 65 114-186 23-87 (227)
154 3dbh_I NEDD8; cell cycle, acti 31.4 90 0.0031 25.4 6.1 43 413-459 11-53 (88)
155 2hj8_A Interferon-induced 17 k 31.0 1.1E+02 0.0039 25.0 6.7 43 415-461 5-47 (88)
156 1wh3_A 59 kDa 2'-5'-oligoadeny 30.8 1.3E+02 0.0043 24.4 6.9 44 414-461 7-50 (87)
157 2kk8_A Uncharacterized protein 30.7 88 0.003 25.7 5.9 43 415-461 11-53 (84)
158 1wx7_A Ubiquilin 3; ubiquitin- 30.3 1.6E+02 0.0054 25.2 7.7 44 413-461 16-59 (106)
159 1sif_A Ubiquitin; hydrophobic 29.7 79 0.0027 26.1 5.4 43 415-461 10-52 (88)
160 2klc_A Ubiquilin-1; ubiquitin- 29.0 1.8E+02 0.0062 24.6 7.8 56 430-492 36-93 (101)
161 1wgg_A Ubiquitin carboxyl-term 28.4 96 0.0033 26.2 5.8 53 430-490 18-73 (96)
162 3a9j_A Ubiquitin; protein comp 28.3 87 0.003 24.4 5.3 29 431-459 13-41 (76)
163 1uh6_A Ubiquitin-like 5; beta- 28.1 1.5E+02 0.005 25.6 6.9 44 414-461 28-71 (100)
164 1j8c_A Ubiquitin-like protein 27.4 3.2E+02 0.011 24.1 9.7 67 414-492 32-100 (125)
165 3phx_B Ubiquitin-like protein 26.9 1.2E+02 0.0039 24.2 5.9 41 415-459 5-45 (79)
166 1ndd_A NEDD8, protein (ubiquit 26.9 97 0.0033 24.1 5.3 29 431-459 13-41 (76)
167 2v1y_A Phosphatidylinositol-4, 26.2 2.7E+02 0.0094 24.3 8.3 66 118-183 24-97 (108)
168 2kd0_A LRR repeats and ubiquit 25.8 1E+02 0.0035 25.3 5.4 33 430-462 23-55 (85)
169 4fbj_B NEDD8; effector-HOST ta 25.6 1.1E+02 0.0036 25.3 5.5 31 431-461 13-43 (88)
170 4dwf_A HLA-B-associated transc 25.0 1.3E+02 0.0044 24.7 6.0 42 414-459 5-46 (90)
171 2cr8_A MDM4 protein; ZF-ranbp 24.8 22 0.00077 26.6 0.9 15 696-710 7-21 (53)
172 2con_A RUH-035 protein, NIN on 24.7 21 0.00071 29.6 0.8 36 699-735 29-66 (79)
173 2faz_A Ubiquitin-like containi 24.5 1.5E+02 0.0051 23.4 6.1 44 415-461 3-47 (78)
174 3vdz_A Ubiquitin-40S ribosomal 24.3 1.4E+02 0.0047 25.9 6.2 43 413-459 34-76 (111)
175 2kan_A Uncharacterized protein 23.9 2.1E+02 0.0072 23.9 7.1 32 430-461 26-57 (94)
176 1wju_A NEDD8 ultimate buster-1 23.5 2.5E+02 0.0086 24.1 7.5 39 429-470 30-68 (100)
177 2wyq_A HHR23A, UV excision rep 23.4 2.8E+02 0.0096 22.0 8.4 67 415-492 6-77 (85)
178 2ojr_A Ubiquitin; lanthide-bin 23.0 1.8E+02 0.0063 25.0 6.8 44 414-461 35-78 (111)
179 4a3p_A Ubiquitin carboxyl-term 22.9 2.1E+02 0.0073 28.0 8.0 63 429-491 140-204 (217)
180 2eel_A Cell death activator CI 22.8 2.2E+02 0.0075 24.1 6.7 45 114-161 11-55 (91)
181 3mp2_A Non-structural protein 22.7 70 0.0024 31.6 4.2 31 777-811 165-195 (211)
182 1wy8_A NP95-like ring finger p 22.3 3E+02 0.01 22.2 7.8 45 414-461 7-52 (89)
183 4ekf_A Adenain; alpha and beta 22.3 74 0.0025 30.6 4.1 32 773-804 40-72 (204)
184 3m63_B Ubiquitin domain-contai 21.9 61 0.0021 27.8 3.3 31 431-461 40-70 (101)
185 1ef1_A Moesin; membrane, FERM 21.5 4E+02 0.014 26.9 10.3 77 112-191 1-78 (294)
186 1yx5_B Ubiquitin; proteasome, 21.4 1.6E+02 0.0055 24.6 5.9 32 430-461 12-43 (98)
187 1y8x_B Ubiquitin-activating en 21.1 97 0.0033 26.7 4.3 64 125-188 6-81 (98)
188 3mp2_A Non-structural protein 20.8 41 0.0014 33.2 2.1 28 273-300 11-38 (211)
189 4gmv_A RAS-associated and plec 20.5 2.6E+02 0.0089 28.8 8.3 66 411-480 28-94 (281)
No 1
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=5.1e-65 Score=568.44 Aligned_cols=306 Identities=56% Similarity=0.979 Sum_probs=263.7
Q ss_pred CCCCccCcccCCCccchhhHHHhhhCcHHHHHHHHHh-hhhhhccCCCC-------------------------------
Q 040385 271 ASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPL------------------------------- 318 (827)
Q Consensus 271 ~~~g~~GL~NlGNTCYmNSvLQcL~~~~~l~~~~l~~-~~~~~~~~n~~------------------------------- 318 (827)
..+|++||.|+||||||||+||||+|+|+|++||+.. +..+++..+|.
T Consensus 4 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~ 83 (367)
T 2y6e_A 4 IQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFK 83 (367)
T ss_dssp CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHHH
T ss_pred CCCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHHHHH
Confidence 3589999999999999999999999999999999853 33333333332
Q ss_pred ----------------cHHHHHHHHHHHHHhhhccccCCCceeccCCCCCCcHHHHHHHHHhhhccCCCceeecccceEe
Q 040385 319 ----------------GMVELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYK 382 (827)
Q Consensus 319 ----------------~~~Efl~~lLd~L~e~l~~~~~~~~~~~~~~~~~~~~~~a~e~~~~~~~~~~s~I~~lF~G~~~ 382 (827)
..+|||.+|||.||++++++..+|+.+..+..+.++...|.+.|..+..++.++|.++|+|+++
T Consensus 84 ~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~l~ 163 (367)
T 2y6e_A 84 TQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFK 163 (367)
T ss_dssp HHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEEEE
T ss_pred HHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCccccccCcEEe
Confidence 2239999999999999999999999988888999999999999999999999999999999999
Q ss_pred eeEecCCCCCeeeeecCceeEEEeCCCCccceEEEEEEcCCCCCcCeEEEEEecCCCcHHHHHHHHHhhcCCCCCCcEEE
Q 040385 383 STLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKV 462 (827)
Q Consensus 383 s~l~C~~C~~~s~~~e~F~~LsL~lp~~~~~~~~~~~~~~~~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~ 462 (827)
++++|..|+++|.++|+|++|+||||......+.+.
T Consensus 164 s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~-------------------------------------------- 199 (367)
T 2y6e_A 164 STLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGP-------------------------------------------- 199 (367)
T ss_dssp EEEECTTTCCEEEEEEEESSEEEECCC-----------------------------------------------------
T ss_pred eeEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceee--------------------------------------------
Confidence 999999999999999999999999997642100000
Q ss_pred EEEeCCceEEeccCccccccccCCCCcEEEEEccCCcccceEEEEeeeecccCcCccccccCceeeccceEEEeecCCCC
Q 040385 463 AEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVI 542 (827)
Q Consensus 463 ~e~~~~~~~~~~~d~~~~l~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~~~~~~~~~~~ 542 (827)
+
T Consensus 200 ----------~--------------------------------------------------------------------- 200 (367)
T 2y6e_A 200 ----------M--------------------------------------------------------------------- 200 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------e---------------------------------------------------------------------
Confidence 0
Q ss_pred CHHHHHHHHHHHhCCcccccccccCCCCCCCCcccCCCCCCCCCCCCCCCcccccccCccccCCCCcceEEecCCCcccc
Q 040385 543 SSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFD 622 (827)
Q Consensus 543 s~~~i~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 622 (827)
T Consensus 201 -------------------------------------------------------------------------------- 200 (367)
T 2y6e_A 201 -------------------------------------------------------------------------------- 200 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCCCcccccCCCCCceEEEEecChhhHhhhhhhhhhhhhhhccCCcccccCCCCCCCHHHHHHHhhcccccCCCCCCC
Q 040385 623 LSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWY 702 (827)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~F~~~E~L~~~d~~~ 702 (827)
|.+. ......++|++||+.|+.+|.|+++++|+
T Consensus 201 -----------------------~~~~------------------------~~~~~~~sL~~~L~~f~~~E~l~~~~~~~ 233 (367)
T 2y6e_A 201 -----------------------LQPQ------------------------KKKKTTVALRDCIELFTTMETLGEHDPWY 233 (367)
T ss_dssp --------------------------------------------------------CEEHHHHHHHHTSCEECCC-CCEE
T ss_pred -----------------------eccc------------------------cccCCCCCHHHHHHHhcccccCCCCCCcc
Confidence 0000 00013458999999999999999999999
Q ss_pred CccCcccceeEEEEEeeecCCeEEEEEeeeeecccccceeeeeEeccccccccccccccCCCCccceEEEEEEEEeecCC
Q 040385 703 CPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGM 782 (827)
Q Consensus 703 C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~Ki~~~V~fPl~~Ldl~~~~~~~~~~~~~~Y~L~aVi~H~G~~ 782 (827)
|++|++++.|+|++.|+++|+||+||||||.++++...|+++.|.||++.|||++|+..... ....|+|+|||+|.|++
T Consensus 234 C~~C~~~~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~-~~~~Y~L~avv~H~G~~ 312 (367)
T 2y6e_A 234 CPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSA-RPYVYDLIAVSNHYGAM 312 (367)
T ss_dssp ETTTTEEECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCSSS-CCCEEEEEEEEEEECSS
T ss_pred CCCCCCCceEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhhccCCCC-CCceEEEEEEeecCCCC
Confidence 99999999999999999999999999999999987889999999999768999999987654 56899999999999999
Q ss_pred CcceEEEEEEeCCCCCEEEEeCCcceecCcccccCCCeEEEEeeC
Q 040385 783 GSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827 (827)
Q Consensus 783 ~~GHY~a~~k~~~~~~W~~fnD~~V~~~~~~~v~~~~aYiLfY~R 827 (827)
++|||+||+|+..+++||+|||+.|+++++++|.+.+||||||+|
T Consensus 313 ~~GHY~a~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r 357 (367)
T 2y6e_A 313 GVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQR 357 (367)
T ss_dssp SSCEEEEEEECTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEE
T ss_pred CCCeeeEEEEcCCCCeEEEECCCCceECCHHHcCCCCcEEEEEEE
Confidence 999999999986689999999999999999999999999999997
No 2
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=3.2e-62 Score=550.83 Aligned_cols=289 Identities=46% Similarity=0.870 Sum_probs=252.9
Q ss_pred CCCCccCcccCCCccchhhHHHhhhCcHHHHHHHHHh-hhhhhccCCC--------------------------------
Q 040385 271 ASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNP-------------------------------- 317 (827)
Q Consensus 271 ~~~g~~GL~NlGNTCYmNSvLQcL~~~~~l~~~~l~~-~~~~~~~~n~-------------------------------- 317 (827)
..+|++||.|+||||||||+||||+|+|+|++||+.. +..+++..++
T Consensus 58 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~i~P~~f~ 137 (396)
T 2gfo_A 58 SGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFK 137 (396)
T ss_dssp SSTTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCEEEECCHHHH
T ss_pred CCCCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcCCCceECHHHHH
Confidence 4689999999999999999999999999999999752 3333322222
Q ss_pred ---------------CcHHHHHHHHHHHHHhhhccccCCCceeccCCCCCCcHHHHHHHHHhhhccCCCceeecccceEe
Q 040385 318 ---------------LGMVELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYK 382 (827)
Q Consensus 318 ---------------~~~~Efl~~lLd~L~e~l~~~~~~~~~~~~~~~~~~~~~~a~e~~~~~~~~~~s~I~~lF~G~~~ 382 (827)
...+|||.+|||.||+++++...++..+..+.++..+.+.|.+.|..+..++.++|.++|+|+++
T Consensus 138 ~~l~~~~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~l~ 217 (396)
T 2gfo_A 138 ITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFK 217 (396)
T ss_dssp HHHHHHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHHHHHHCCSHHHHHHCEEEE
T ss_pred HHHHHhchhhcCCCCCChHHHHHHHHHHHHHHHhhhccccccccccccccchhhHHHHHHHHhhhccCCccchhhCcEEE
Confidence 23339999999999999998877777776677777888999999999999999999999999999
Q ss_pred eeEecCCCCCeeeeecCceeEEEeCCCCccceEEEEEEcCCCCCcCeEEEEEecCCCcHHHHHHHHHhhcCCCCCCcEEE
Q 040385 383 STLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKV 462 (827)
Q Consensus 383 s~l~C~~C~~~s~~~e~F~~LsL~lp~~~~~~~~~~~~~~~~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~ 462 (827)
++++|..|+++|.++|+|++|+|+||...
T Consensus 218 s~i~C~~C~~~s~~~e~f~~LsL~ip~~~--------------------------------------------------- 246 (396)
T 2gfo_A 218 STVQCLTCHKKSRTFEAFMYLSLPLASTS--------------------------------------------------- 246 (396)
T ss_dssp EEEEETTTCCEEEEEEEESSEEECCSCSS---------------------------------------------------
T ss_pred EEEEeCCCCceecccccceeeeecccccc---------------------------------------------------
Confidence 99999999999999999999999998531
Q ss_pred EEEeCCceEEeccCccccccccCCCCcEEEEEccCCcccceEEEEeeeecccCcCccccccCceeeccceEEEeecCCCC
Q 040385 463 AEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVI 542 (827)
Q Consensus 463 ~e~~~~~~~~~~~d~~~~l~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~~~~~~~~~~~ 542 (827)
T Consensus 247 -------------------------------------------------------------------------------- 246 (396)
T 2gfo_A 247 -------------------------------------------------------------------------------- 246 (396)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CHHHHHHHHHHHhCCcccccccccCCCCCCCCcccCCCCCCCCCCCCCCCcccccccCccccCCCCcceEEecCCCcccc
Q 040385 543 SSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFD 622 (827)
Q Consensus 543 s~~~i~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 622 (827)
T Consensus 247 -------------------------------------------------------------------------------- 246 (396)
T 2gfo_A 247 -------------------------------------------------------------------------------- 246 (396)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCCCcccccCCCCCceEEEEecChhhHhhhhhhhhhhhhhhccCCcccccCCCCCCCHHHHHHHhhcccccCCCCCCC
Q 040385 623 LSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWY 702 (827)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~F~~~E~L~~~d~~~ 702 (827)
.++|++||+.|+++|.|+++++|+
T Consensus 247 --------------------------------------------------------~~sL~~~L~~f~~~E~l~~~n~~~ 270 (396)
T 2gfo_A 247 --------------------------------------------------------KCTLQDCLRLFSKEEKLTDNNRFY 270 (396)
T ss_dssp --------------------------------------------------------EEEHHHHHHHHTSCEEECSTTCEE
T ss_pred --------------------------------------------------------cCCHHHHHHHhCCcccccCCcccc
Confidence 016899999999999999999999
Q ss_pred CccCcccceeEEEEEeeecCCeEEEEEeeeeecccccceeeeeEeccccccccccccccCCCCccceEEEEEEEEeecCC
Q 040385 703 CPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGM 782 (827)
Q Consensus 703 C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~Ki~~~V~fPl~~Ldl~~~~~~~~~~~~~~Y~L~aVi~H~G~~ 782 (827)
|++|+.++.|+|++.|+++|+||+||||||.+++....|+.+.|.||++.|||++|+..+.. ....|+|+|||+|.|++
T Consensus 271 C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~-~~~~Y~L~avv~H~G~~ 349 (396)
T 2gfo_A 271 CSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKN-NLKKYNLFSVSNHYGGL 349 (396)
T ss_dssp ETTTTEEECEEEEEEEEECCSEEEEEECCEEECSSSEEECCCEEECCSSCBCCGGGBCSCCS-SCCCBEEEEEEEEESCT
T ss_pred cCCcccccceEEEEEEecCCcEEEEEecceeccCccceecCceEecchhhccccccccCCCC-CCceEEEEEEEEecCCC
Confidence 99999999999999999999999999999999877788999999999878999999987543 45789999999999999
Q ss_pred CcceEEEEEEeCCCCCEEEEeCCcceecCcccccCCCeEEEEeeC
Q 040385 783 GSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827 (827)
Q Consensus 783 ~~GHY~a~~k~~~~~~W~~fnD~~V~~~~~~~v~~~~aYiLfY~R 827 (827)
++|||+||+|+..+++||.|||+.|+++++++|.+.+||||||+|
T Consensus 350 ~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r 394 (396)
T 2gfo_A 350 DGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFYTS 394 (396)
T ss_dssp TTCEEEEEEEETTTTEEEEEETTEEEECCHHHHSCTTEEEEEEEC
T ss_pred CCCceEEEEcCCCCCCEEEEeCCCeEECCHHHcCCCCceEEEEEE
Confidence 999999999987689999999999999999999999999999997
No 3
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=1.4e-59 Score=519.52 Aligned_cols=290 Identities=40% Similarity=0.744 Sum_probs=257.4
Q ss_pred CCCCccCcccCCCccchhhHHHhhhCcHHHHHHHHHh-hhhhhc------------------------------------
Q 040385 271 ASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREIN------------------------------------ 313 (827)
Q Consensus 271 ~~~g~~GL~NlGNTCYmNSvLQcL~~~~~l~~~~l~~-~~~~~~------------------------------------ 313 (827)
..+|++||.|+||||||||+||||+|+|+|++|+++. +....+
T Consensus 5 ~~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~p~~~~~ 84 (348)
T 3nhe_A 5 SAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFKT 84 (348)
T ss_dssp -CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSSCCTTHHHHHHHHHHHHHHTTCCTTCEECCHHHHH
T ss_pred CCCCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhccCCCcccHHHHHHHHHHHHHHcCCCCCccCHHHHHH
Confidence 3579999999999999999999999999999998752 111110
Q ss_pred ----------cCCCCcHHHHHHHHHHHHHhhhccccCCCceeccCCCCCCcHHHHHHHHHhhhccCCCceeecccceEee
Q 040385 314 ----------WQNPLGMVELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKS 383 (827)
Q Consensus 314 ----------~~n~~~~~Efl~~lLd~L~e~l~~~~~~~~~~~~~~~~~~~~~~a~e~~~~~~~~~~s~I~~lF~G~~~s 383 (827)
...+...+|||.+|||.||+++++...++.....+.++.++.+.+.+.|..+..++.++|.++|+|++++
T Consensus 85 ~l~~~~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~ 164 (348)
T 3nhe_A 85 QIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKS 164 (348)
T ss_dssp HHHHHSGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCCCHHHHHHCEEEEE
T ss_pred HHHHhhhhhCCCCccCHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHhhcCCccccccceEEEE
Confidence 1123344599999999999999998777766666666777888999999999999999999999999999
Q ss_pred eEecCCCCCeeeeecCceeEEEeCCCCccceEEEEEEcCCCCCcCeEEEEEecCCCcHHHHHHHHHhhcCCCCCCcEEEE
Q 040385 384 TLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVA 463 (827)
Q Consensus 384 ~l~C~~C~~~s~~~e~F~~LsL~lp~~~~~~~~~~~~~~~~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~ 463 (827)
+++|..|+++|.++|+|++|+||||....
T Consensus 165 ~~~C~~C~~~s~~~e~f~~LsL~i~~~~~--------------------------------------------------- 193 (348)
T 3nhe_A 165 SLTCTDCGYCSTVFDPFWDLSLPIAKRGY--------------------------------------------------- 193 (348)
T ss_dssp EEEETTTCCEEEEEEEESSEEECCCSSCS---------------------------------------------------
T ss_pred EEEcCCCCCEeeeeccceEEeeeCCCccc---------------------------------------------------
Confidence 99999999999999999999999985320
Q ss_pred EEeCCceEEeccCccccccccCCCCcEEEEEccCCcccceEEEEeeeecccCcCccccccCceeeccceEEEeecCCCCC
Q 040385 464 EIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVIS 543 (827)
Q Consensus 464 e~~~~~~~~~~~d~~~~l~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~~~~~~~~~~~s 543 (827)
T Consensus 194 -------------------------------------------------------------------------------- 193 (348)
T 3nhe_A 194 -------------------------------------------------------------------------------- 193 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHhCCcccccccccCCCCCCCCcccCCCCCCCCCCCCCCCcccccccCccccCCCCcceEEecCCCccccC
Q 040385 544 SGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFDL 623 (827)
Q Consensus 544 ~~~i~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 623 (827)
T Consensus 194 -------------------------------------------------------------------------------- 193 (348)
T 3nhe_A 194 -------------------------------------------------------------------------------- 193 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCCCcccccCCCCCceEEEEecChhhHhhhhhhhhhhhhhhccCCcccccCCCCCCCHHHHHHHhhcccccCCCCCCCC
Q 040385 624 SVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYC 703 (827)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~F~~~E~L~~~d~~~C 703 (827)
..++|++||+.|+.+|.|+++++|+|
T Consensus 194 ------------------------------------------------------~~~sl~~~L~~~~~~e~l~~~~~~~C 219 (348)
T 3nhe_A 194 ------------------------------------------------------PEVTLMDCMRLFTKEDVLDGDEKPTC 219 (348)
T ss_dssp ------------------------------------------------------SCEEHHHHHHHHHSCEEECGGGCCEE
T ss_pred ------------------------------------------------------CCCCHHHHHHHhcCceEecCCCceEC
Confidence 12379999999999999999999999
Q ss_pred ccCcccceeEEEEEeeecCCeEEEEEeeeeecccccceeeeeEeccccccccccccccCCCCccceEEEEEEEEeecCCC
Q 040385 704 PQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMG 783 (827)
Q Consensus 704 ~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~Ki~~~V~fPl~~Ldl~~~~~~~~~~~~~~Y~L~aVi~H~G~~~ 783 (827)
++|+.++.|.|++.|+++|+||+||||||.++.....|+.+.|.||++.|||++|+.... ....|+|+|||+|.|+..
T Consensus 220 ~~C~~~~~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~K~~~~v~fp~~~ldl~~~~~~~~--~~~~Y~L~avv~H~G~~~ 297 (348)
T 3nhe_A 220 CRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENT--NHAVYNLYAVSNHSGTTM 297 (348)
T ss_dssp TTTTEECCEEEEEEEEECCSEEEEEECCBCCCSSCCCBCCCCEECCSSCEECGGGBCTTC--CCCEEEEEEEEEEEECSS
T ss_pred CCCCCcccEEEEEEeecCCceEEEEEEcccccCCceeecCcceeccCCcCCHhhhcCCCC--CCCcEEEEEEEEccCCCC
Confidence 999999999999999999999999999999988888999999999987899999997654 467899999999999999
Q ss_pred cceEEEEEEeCCCCCEEEEeCCcceecCcccccCCCeEEEEeeC
Q 040385 784 SGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827 (827)
Q Consensus 784 ~GHY~a~~k~~~~~~W~~fnD~~V~~~~~~~v~~~~aYiLfY~R 827 (827)
+|||+||+|++.+++||+|||+.|+++++++|.+.+||||||+|
T Consensus 298 ~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aY~LfY~r 341 (348)
T 3nhe_A 298 GGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYEL 341 (348)
T ss_dssp CEEEEEEEECTTTCCEEEEETTEEEEECGGGTCCTTEEEEEEEE
T ss_pred CcccEEEEccCCCCcEEEEeCCCceECCHHHcCCCCceEEEEEe
Confidence 99999999987789999999999999999999999999999997
No 4
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=100.00 E-value=1.6e-58 Score=512.55 Aligned_cols=288 Identities=36% Similarity=0.642 Sum_probs=239.2
Q ss_pred CCccCcccCCCccchhhHHHhhhCcHHHHHHHHHh-hhhh----------------------------------------
Q 040385 273 VGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRRE---------------------------------------- 311 (827)
Q Consensus 273 ~g~~GL~NlGNTCYmNSvLQcL~~~~~l~~~~l~~-~~~~---------------------------------------- 311 (827)
.|++||.|+||||||||+||||+|+|+|++||+.. +...
T Consensus 1 TG~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~v~p~~~~~~l~ 80 (355)
T 3i3t_A 1 SGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHPDSCEAVNPTRFRAVFQ 80 (355)
T ss_dssp --CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC------CHHHHHHHHHHHHTSSCSSCCCBCCHHHHHHHH
T ss_pred CCCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcCCCCchhHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Confidence 48999999999999999999999999999998742 1110
Q ss_pred -----hccCCCCcHHHHHHHHHHHHHhhhccccCCCceec---------------cCCCCCCcHHHHHHHHHhhhccCCC
Q 040385 312 -----INWQNPLGMVELLAFLLDGLHEDLNRVKHKPYIKS---------------KDADGRPDEEVADEYWANHIARNDS 371 (827)
Q Consensus 312 -----~~~~n~~~~~Efl~~lLd~L~e~l~~~~~~~~~~~---------------~~~~~~~~~~~a~e~~~~~~~~~~s 371 (827)
+....+...+|||.+|||.||+++++...+..... .......+.+.+.+.|..+..++.+
T Consensus 81 ~~~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 160 (355)
T 3i3t_A 81 KYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDS 160 (355)
T ss_dssp HHCGGGCSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHHHHCCS
T ss_pred HhChhhCCCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCccccccccccCCCCCHHHHHHHHHHHhhhccCC
Confidence 00112234459999999999999988654322111 1112334567788999999999999
Q ss_pred ceeecccceEeeeEecCCCCCeeeeecCceeEEEeCCCCccceEEEEEEcCCCCCcCeEEEEEecCCCcHHHHHHHHHhh
Q 040385 372 IIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNI 451 (827)
Q Consensus 372 ~I~~lF~G~~~s~l~C~~C~~~s~~~e~F~~LsL~lp~~~~~~~~~~~~~~~~~~~p~~~~v~~~k~~~~~~l~~~l~~~ 451 (827)
+|.++|+|+++++++|..|++.+.++|+|++|+|+||.....
T Consensus 161 ~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~-------------------------------------- 202 (355)
T 3i3t_A 161 KIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFA-------------------------------------- 202 (355)
T ss_dssp HHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC------------------------------------------
T ss_pred cccccccEEEEeeEEeCCCCCCceeeccceeecccCCccccc--------------------------------------
Confidence 999999999999999999999999999999999999854200
Q ss_pred cCCCCCCcEEEEEEeCCceEEeccCccccccccCCCCcEEEEEccCCcccceEEEEeeeecccCcCccccccCceeeccc
Q 040385 452 CSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTP 531 (827)
Q Consensus 452 ~~~~~~~~l~~~e~~~~~~~~~~~d~~~~l~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P 531 (827)
T Consensus 203 -------------------------------------------------------------------------------- 202 (355)
T 3i3t_A 203 -------------------------------------------------------------------------------- 202 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCCcccccccccCCCCCCCCcccCCCCCCCCCCCCCCCcccccccCccccCCCCcce
Q 040385 532 LVSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPL 611 (827)
Q Consensus 532 ~~~~~~~~~~~s~~~i~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 611 (827)
T Consensus 203 -------------------------------------------------------------------------------- 202 (355)
T 3i3t_A 203 -------------------------------------------------------------------------------- 202 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCccccCCcCCCcccccCCCCCceEEEEecChhhHhhhhhhhhhhhhhhccCCcccccCCCCCCCHHHHHHHhhc
Q 040385 612 QLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLR 691 (827)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~F~~ 691 (827)
...++|++||+.|++
T Consensus 203 -----------------------------------------------------------------~~~~sl~~~L~~~~~ 217 (355)
T 3i3t_A 203 -----------------------------------------------------------------GGKVSLRDCFNLFTK 217 (355)
T ss_dssp --------------------------------------------------------------------CBHHHHHHHHHC
T ss_pred -----------------------------------------------------------------cCccCHHHHHHHhCC
Confidence 012489999999999
Q ss_pred ccccCCCCCCCCccCcccceeEEEEEeeecCCeEEEEEeeeeecccccceeeeeEeccccccccccccccCCCCccceEE
Q 040385 692 EEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYE 771 (827)
Q Consensus 692 ~E~L~~~d~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~Ki~~~V~fPl~~Ldl~~~~~~~~~~~~~~Y~ 771 (827)
+|.|+++++|+|++|++++.|+|++.|+++|+||+||||||.++++...|+.+.|.||++.|||.+|+.... ....|+
T Consensus 218 ~e~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~lkRF~~~~~~~~K~~~~v~fp~~~l~l~~~~~~~~--~~~~Y~ 295 (355)
T 3i3t_A 218 EEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASDKA--GSPVYQ 295 (355)
T ss_dssp CEEECGGGCCCCSSSCCCCCEEEEEEEEECCSEEEEEECCEECCSSCCEECCCCCBCCSSCEECGGGBC------CCEEE
T ss_pred ccccCCCCCeeCCCCCCccceEEEEEcccCChheEEEhhheecCCCCceECCcceeCCccccCchhhccCCC--CCcceE
Confidence 999999999999999999999999999999999999999999998888999999999988899999987654 467899
Q ss_pred EEEEEEeecCCCcceEEEEEEeCCCCCEEEEeCCcceecCcccccCCCeEEEEeeC
Q 040385 772 LYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827 (827)
Q Consensus 772 L~aVi~H~G~~~~GHY~a~~k~~~~~~W~~fnD~~V~~~~~~~v~~~~aYiLfY~R 827 (827)
|+|||+|.|++++|||+||+|. .+.||+|||+.|+++++++|.+.+||||||+|
T Consensus 296 L~avv~H~G~~~~GHY~~~~~~--~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r 349 (355)
T 3i3t_A 296 LYALCNHSGSVHYGHYTALCRC--QTGWHVYNDSRVSPVSENQVASSEGYVLFYQL 349 (355)
T ss_dssp EEEEEEEEEETTEEEEEEEEEE--TTEEEEEETTEEEEECHHHHHTSCCSEEEEEE
T ss_pred EEEEEEecCCCCCCeEEEEEEc--CCeEEEEcCCCcEECCHHHcCCCCcEEEEEEe
Confidence 9999999999999999999996 56799999999999999999999999999997
No 5
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=100.00 E-value=1.1e-54 Score=482.37 Aligned_cols=145 Identities=23% Similarity=0.466 Sum_probs=128.2
Q ss_pred CHHHHHHHhhcccccCCCCCCCCccCcccceeEEEEEeeecCCeEEEEEeeeeecc--cccceeeeeEeccccccccccc
Q 040385 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSR--SMKHKLETFVNFPIHDFNLTKY 758 (827)
Q Consensus 681 sL~dCL~~F~~~E~L~~~d~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~--~~~~Ki~~~V~fPl~~Ldl~~~ 758 (827)
+|.+||+.|+.+|.|+++++|.|+.|+ ++.|+|++.|+++|+||+||||||.++. +...|+++.|.|| ..|||++|
T Consensus 152 ~l~~~L~~~~~~E~l~~~~~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~fp-~~Ldl~~~ 229 (353)
T 1nb8_A 152 NIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFP-EQLPLDEF 229 (353)
T ss_dssp BHHHHHHHHTCCEEECTTTCEECGGGC-EECEEEEEEESCCCSEEEEEECCCC--------CCCCCCCBCC-SEEECGGG
T ss_pred chHHHHHHhhCccccCCCccccCCcCc-cEeeEEEEEhhcCCCceEEEEecEEEecccCceEecCcEEECC-Ceeehhhh
Confidence 478999999999999999999999996 6789999999999999999999999975 4578999999999 69999999
Q ss_pred cccCCCCccceEEEEEEEEeecCCCcceEEEEEEeCCCCCEEEEeCCcceecCccccc---------------CCCeEEE
Q 040385 759 VANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVK---------------SAAAYVL 823 (827)
Q Consensus 759 ~~~~~~~~~~~Y~L~aVi~H~G~~~~GHY~a~~k~~~~~~W~~fnD~~V~~~~~~~v~---------------~~~aYiL 823 (827)
+...+......|+|+|||+|.|++++|||+||+|+..+++||.|||+.|+++++++|. ..+||||
T Consensus 230 ~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~gg~~~~~~~~~~~~aYiL 309 (353)
T 1nb8_A 230 LQKTDPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYML 309 (353)
T ss_dssp BSSCCTTSCCEEEEEEEEEEESSTTCCCEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCC-------CCEEEEEE
T ss_pred hcccCCCCCceEEEEEEEEEeCCCCCcEEEEEEecCCCCCEEEEECcceEECCHHHHHHHhcCCCccccccCcCCeEEEE
Confidence 9876554678999999999999999999999999767899999999999999988875 3679999
Q ss_pred EeeC
Q 040385 824 FYRR 827 (827)
Q Consensus 824 fY~R 827 (827)
||+|
T Consensus 310 fY~r 313 (353)
T 1nb8_A 310 VYIR 313 (353)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9997
No 6
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=100.00 E-value=5.4e-52 Score=479.01 Aligned_cols=144 Identities=35% Similarity=0.732 Sum_probs=131.6
Q ss_pred CHHHHHHHhhcccccCCCCCCCCccCcccceeEEEEEeeecCCeEEEEEeeeeecc-cccceeeeeEecccccccccccc
Q 040385 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSR-SMKHKLETFVNFPIHDFNLTKYV 759 (827)
Q Consensus 681 sL~dCL~~F~~~E~L~~~d~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~-~~~~Ki~~~V~fPl~~Ldl~~~~ 759 (827)
+|++||+.|+++|.|++. .|+|++|+.++.|+|++.|.++|+||+||||||.++. +...|+++.|.|| ..|||++|+
T Consensus 320 sl~~~L~~~~~~E~l~~~-~~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~K~~~~V~fP-~~Ldl~~~~ 397 (476)
T 3mhs_A 320 KLYECLDSFHKKEQLKDF-NYHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFP-TYLNMKNYC 397 (476)
T ss_dssp BHHHHHHHHHCCEECSSC-CCEETTTTEECCCEEEEEEEEBCSEEEEEECCEEECTTSCEEECCCCCBCC-SEEECGGGB
T ss_pred HHHHHHHHhcChhhccCC-CCcCCccCCcccEEEEEEcccCCcceEEEeeeccccCCCCeEECCEEEcCC-Ceeechhhc
Confidence 689999999999999854 4999999999999999999999999999999999873 5678999999999 699999998
Q ss_pred ccCCC--------CccceEEEEEEEEeecCCCcceEEEEEEeCCCCCEEEEeCCcceecCcccccCCCeEEEEeeC
Q 040385 760 ANKNS--------SRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827 (827)
Q Consensus 760 ~~~~~--------~~~~~Y~L~aVi~H~G~~~~GHY~a~~k~~~~~~W~~fnD~~V~~~~~~~v~~~~aYiLfY~R 827 (827)
..... .....|+|+|||+|.|++++|||+||+|. .+++||.|||+.|+++++++|.+..||||||+|
T Consensus 398 ~~~~~~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~vr~-~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r 472 (476)
T 3mhs_A 398 STKEKDKHSENGKVPDIIYELIGIVSHKGTVNEGHYIAFCKI-SGGQWFKFNDSMVSSISQEEVLKEQAYLLFYTI 472 (476)
T ss_dssp SCCBCCC--CCCBCCCEEEEEEEEEEEEECSSSEEEEEEEEC-TTSCEEEEETTEEEEECHHHHTTSCEEEEEEEE
T ss_pred CcccccccccccCCCCCcEEEEEEEEeCCCCCCCceEEEEEC-CCCcEEEEeCCceEECCHHHhccCCcEEEEEEE
Confidence 76432 24578999999999999999999999996 678999999999999999999999999999986
No 7
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=100.00 E-value=9.9e-52 Score=481.61 Aligned_cols=145 Identities=23% Similarity=0.467 Sum_probs=132.1
Q ss_pred CHHHHHHHhhcccccCCCCCCCCccCcccceeEEEEEeeecCCeEEEEEeeeeecc--cccceeeeeEeccccccccccc
Q 040385 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSR--SMKHKLETFVNFPIHDFNLTKY 758 (827)
Q Consensus 681 sL~dCL~~F~~~E~L~~~d~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~--~~~~Ki~~~V~fPl~~Ldl~~~ 758 (827)
+|.+||+.|+.+|.|+++++|+|++|+ ++.|+|++.|+++|+||+||||||.++. +...|+++.|.|| ..|||++|
T Consensus 321 ~l~~~L~~~~~~E~l~~~n~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fp-~~Ldl~~~ 398 (522)
T 2f1z_A 321 NIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFP-EQLPLDEF 398 (522)
T ss_dssp BHHHHHHHHTCEEEECTTSCBCCGGGC-SBCEEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCCCBCC-SEEECGGG
T ss_pred cchHHHHHhhceeecCCcceeecCcCC-ccceEEEEEeecCCceEEEEEEeEEEcccCCcceEcCcEEeCC-Ceecchhh
Confidence 478999999999999999999999996 5889999999999999999999999975 4578999999999 69999999
Q ss_pred cccCCCCccceEEEEEEEEeecCCCcceEEEEEEeCCCCCEEEEeCCcceecCcccccC---------------CCeEEE
Q 040385 759 VANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKS---------------AAAYVL 823 (827)
Q Consensus 759 ~~~~~~~~~~~Y~L~aVi~H~G~~~~GHY~a~~k~~~~~~W~~fnD~~V~~~~~~~v~~---------------~~aYiL 823 (827)
+...+......|+|+|||+|.|++++|||+||+|+..+++||+|||+.|++++.++|.. .+||||
T Consensus 399 ~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~aYiL 478 (522)
T 2f1z_A 399 LQKTDPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYML 478 (522)
T ss_dssp BSSCCTTSCCEEEEEEEEEEECSSSCSEEEEEECTTSSSCCEEEETTEEEECCHHHHSTTSSCCC--------CEEEEEE
T ss_pred hccccCCCCcEEEEEEEEEecccCCCceEEEEEecCCCCCEEEEECceeEECCHHHHHHhhcCCCccccccCcCCceEEE
Confidence 98765546789999999999999999999999997678999999999999999888753 579999
Q ss_pred EeeC
Q 040385 824 FYRR 827 (827)
Q Consensus 824 fY~R 827 (827)
||+|
T Consensus 479 fY~r 482 (522)
T 2f1z_A 479 VYIR 482 (522)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9997
No 8
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=100.00 E-value=8.6e-52 Score=467.31 Aligned_cols=140 Identities=30% Similarity=0.506 Sum_probs=123.4
Q ss_pred CHHHHHHHhhcccccCCCCCCCCccCcccceeEEEEEeeecCCeEEEEEeeeeeccc--ccceeeeeEeccccccccccc
Q 040385 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRS--MKHKLETFVNFPIHDFNLTKY 758 (827)
Q Consensus 681 sL~dCL~~F~~~E~L~~~d~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~--~~~Ki~~~V~fPl~~Ldl~~~ 758 (827)
+|++||+.|+.++ +. |+|++|++.+.++|++.|+++|+||+||||||.++.. ...|+.+.|.|| ..|||.+|
T Consensus 195 ~l~~~L~~~~~e~-l~----~~c~~c~~~~~~~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fP-~~Ldl~~~ 268 (404)
T 2ayn_A 195 YLFTGLKLRLQEE-IT----KQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFP-LMLDMYEL 268 (404)
T ss_dssp BHHHHHHHTTEEC-CC----CEETTTTEECCEEEEEEEEECCSSEEEEEECBCCCCSSSSCCBCCCCCBCC-SEEECGGG
T ss_pred cHHHHHHHhcccc-ee----ecchhhCCccceeeeeeHhhCCCceEEEEEEEEEecccCceeccCceeccC-ceeEHhHh
Confidence 5889999998744 42 7999999999999999999999999999999999853 568999999999 59999999
Q ss_pred cccCC------------------------------------------------CCccceEEEEEEEEeec-CCCcceEEE
Q 040385 759 VANKN------------------------------------------------SSRRQLYELYALTNHYG-GMGSGHYTA 789 (827)
Q Consensus 759 ~~~~~------------------------------------------------~~~~~~Y~L~aVi~H~G-~~~~GHY~a 789 (827)
+.... ......|+|+|||+|.| ++++|||+|
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~L~avv~H~G~s~~~GHY~a 348 (404)
T 2ayn_A 269 CTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVS 348 (404)
T ss_dssp BCHHHHHHTTTTTGGGTCTTC----------------------CCCCCSCTTTTCCCSEEEEEEEEEEESSSTTSSEEEE
T ss_pred cChhhhhhcchhhhHHhhhhcccchhhhhhccccccccccccccccccccccCcCCCceEEEEEEEEecCCCCCCCCeEE
Confidence 86410 11347899999999999 799999999
Q ss_pred EEEeCCCCCEEEEeCCcceecCcccccCCC-------eEEEEeeC
Q 040385 790 HIKLLDENRWYNFDDSHISPINEDDVKSAA-------AYVLFYRR 827 (827)
Q Consensus 790 ~~k~~~~~~W~~fnD~~V~~~~~~~v~~~~-------aYiLfY~R 827 (827)
|+|+ .+++||+|||+.|+++++++|.... ||||||+|
T Consensus 349 ~v~~-~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~aYiLfY~r 392 (404)
T 2ayn_A 349 WVKR-KQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYGP 392 (404)
T ss_dssp EEEE-ETTEEEEEBTTBCCCBCHHHHGGGGSSSSSCEEEEEEEEC
T ss_pred EEEC-CCCeEEEeecccceecCHHHHHhhhCCCCCceEEEEEEEe
Confidence 9997 6889999999999999999998665 99999997
No 9
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=100.00 E-value=2.1e-49 Score=449.51 Aligned_cols=141 Identities=29% Similarity=0.493 Sum_probs=116.9
Q ss_pred CHHHHHHHhhcccccCCCCCCCCccCcccceeEEEEEeeecCCeEEEEEeeeeeccc--ccceeeeeEeccccccccccc
Q 040385 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRS--MKHKLETFVNFPIHDFNLTKY 758 (827)
Q Consensus 681 sL~dCL~~F~~~E~L~~~d~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~--~~~Ki~~~V~fPl~~Ldl~~~ 758 (827)
+|++||+.|+.++ + .|+|++|+..+.|+|++.|.++|+||+||||||.++.. ...|+++.|.|| ..|||.+|
T Consensus 187 ~l~~~L~~~~~e~-i----~~~c~~c~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~V~FP-~~Ldl~~~ 260 (415)
T 1vjv_A 187 FMRNGLLEGLNEK-I----EKRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFP-FQLDVADM 260 (415)
T ss_dssp BHHHHHHHHHEEC--------------CCCCEEEEEEEEECBSEEEEEECCEEEETTTTEEEECCCCCBCC-SEEECGGG
T ss_pred hHHHHHHHHhhhh-h----hhcccccCCcccEEEEEEcccCCCeeEEEEEEEEEeCCCCcchhhcCccCCC-cEeEhHHh
Confidence 5889999999854 3 27999999999999999999999999999999999854 468999999999 59999999
Q ss_pred cccC--------------------------------------------------------------------------CC
Q 040385 759 VANK--------------------------------------------------------------------------NS 764 (827)
Q Consensus 759 ~~~~--------------------------------------------------------------------------~~ 764 (827)
+... ..
T Consensus 261 ~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (415)
T 1vjv_A 261 LTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESEKDQWLEEYKKHFPPNLEKGE 340 (415)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHHHHC----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCTTB
T ss_pred cChhhhhhhhhhHHHHHHHhhhhhhhhhhhhhccccccccccccccchhhhhchhhHHhhhhhhhhhccccccccccccc
Confidence 8631 01
Q ss_pred CccceEEEEEEEEeec-CCCcceEEEEEEe-CCCCCEEEEeCCcceecCcccccCCC-------eEEEEeeC
Q 040385 765 SRRQLYELYALTNHYG-GMGSGHYTAHIKL-LDENRWYNFDDSHISPINEDDVKSAA-------AYVLFYRR 827 (827)
Q Consensus 765 ~~~~~Y~L~aVi~H~G-~~~~GHY~a~~k~-~~~~~W~~fnD~~V~~~~~~~v~~~~-------aYiLfY~R 827 (827)
.....|+|+|||+|.| ++.+|||+||+|+ ..+++||+|||+.|+++++++|.... ||||||+|
T Consensus 341 ~~~~~Y~L~aVv~H~G~s~~~GHY~a~vr~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~aYiLfY~r 412 (415)
T 1vjv_A 341 NPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGESDSALILMYKG 412 (415)
T ss_dssp CSSSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEECHHHHHGGGCCTTSCEEEEEEEEE
T ss_pred CCCceEEEEEEEEecCCCCCCCCEEEEEeCCCCCCcEEEeECCcCeEcCHHHHhhhcCCCCcceEEEEEEEe
Confidence 1347899999999999 7999999999997 56899999999999999999998665 99999997
No 10
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=100.00 E-value=7.9e-48 Score=467.67 Aligned_cols=141 Identities=25% Similarity=0.553 Sum_probs=124.3
Q ss_pred CCCHHHHHHHhhcccccCCCCCCCCccCcccceeEEEEEeeecCCeEEEEEeeeeec-ccccceeeeeEecccccccccc
Q 040385 679 PLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYS-RSMKHKLETFVNFPIHDFNLTK 757 (827)
Q Consensus 679 ~~sL~dCL~~F~~~E~L~~~d~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~-~~~~~Ki~~~V~fPl~~Ldl~~ 757 (827)
.++|++||+.|+.+|.|++ |+|++|+.++.|+|++.|+++|+||+||||||.++ .+...|+++.|.|| ..|||++
T Consensus 545 ~~sL~dcL~~f~~~E~Le~---y~C~~C~~k~~a~K~~~i~~lP~vLiihLkRF~~d~~~~~~Ki~~~V~FP-~~LDl~~ 620 (854)
T 3ihp_A 545 QVPFSSCLEAYGAPEQVDD---FWSTALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMP-EELDISQ 620 (854)
T ss_dssp ECCHHHHHHHHHSCEEEEE---EEETTTTEEEEEEEEEEESSCCSEEEEEECCEEECGGGCEEECCEECCCC-SEEECGG
T ss_pred CCCHHHHHHHhcCceEeee---eeccccCCcceeeEEEEeeeCCceEEEEeehheecCCCceEECCeEEecC-CcEehHH
Confidence 4699999999999999974 99999999999999999999999999999999995 46678999999999 6999999
Q ss_pred ccccCC--------------------------------------------------------------------------
Q 040385 758 YVANKN-------------------------------------------------------------------------- 763 (827)
Q Consensus 758 ~~~~~~-------------------------------------------------------------------------- 763 (827)
|+....
T Consensus 621 y~~~~~q~~E~~lp~~~~~~~~~~~~~~~~~d~~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~hmdd~di~~p 700 (854)
T 3ihp_A 621 LRGTGLQPGEEELPDIAPPLVTPDEPKAPMLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANP 700 (854)
T ss_dssp GBCCCSCTTCCBCCCC----------------CHHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHHTTSCGGGSC
T ss_pred hccCCCCCCceecccccccccccccccccCcCHHHHHHHHhcCCCHHHHHHHHhhcCCCchHHHhHHHhhccCccccccc
Confidence 966210
Q ss_pred --------------------------------------------------------------------------------
Q 040385 764 -------------------------------------------------------------------------------- 763 (827)
Q Consensus 764 -------------------------------------------------------------------------------- 763 (827)
T Consensus 701 ~~~~~~~~~~s~~~~~~~~~~e~i~~l~~mGf~~~~a~~aL~~t~~~~eraidwlfs~~d~~~~~~~~~~~~~~~~~~~~ 780 (854)
T 3ihp_A 701 LILPGSSGPGSTSAAADPPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDLDAEAAMDISEGRSAADSI 780 (854)
T ss_dssp CCCC--------------CCHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC-----------
T ss_pred ccccccccccccccccCCCCHHHHHHHHHcCCCHHHHHHHHHhhcCcHHHHHHhhhcCcccccccccccccccccccccc
Confidence
Q ss_pred ----------CCccceEEEEEEEEeec-CCCcceEEEEEEeCCCCCEEEEeCCcceecCcccccCCCeEEEEeeC
Q 040385 764 ----------SSRRQLYELYALTNHYG-GMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827 (827)
Q Consensus 764 ----------~~~~~~Y~L~aVi~H~G-~~~~GHY~a~~k~~~~~~W~~fnD~~V~~~~~~~v~~~~aYiLfY~R 827 (827)
...+..|+|+|||+|+| ++++|||+||+|+ +++||+|||+.|+++ ++.....||||||+|
T Consensus 781 ~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~~GHY~~~~~~--~~~W~~~nD~~V~~~--~~~~~~~aYilfY~R 851 (854)
T 3ihp_A 781 SESVPVGPKVRDGPGKYQLFAFISHMGTSTMCGHYVCHIKK--EGRWVIYNDQKVCAS--EKPPKDLGYIYFYQR 851 (854)
T ss_dssp -------CCCCCCCSEEEEEEEEEEESSCSSCCEEEEEEEE--TTEEEEEETTEEEEC--SSCCTTSCSEEEEEE
T ss_pred cccccccCCCCCCCceEEEEEEEEeecCCCCCcCeEEEEEe--CCEEEEEECCeeEEc--cccCCCcceEEEEEe
Confidence 00123799999999999 8889999999997 789999999999997 345678999999998
No 11
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=100.00 E-value=2.1e-35 Score=305.68 Aligned_cols=182 Identities=29% Similarity=0.541 Sum_probs=159.3
Q ss_pred ChHHHHHhccCCCCCCCCCCCccccccccCCCCCCCCCCcccCcccccccccCCCCCCccccccccCCCcEEEcCHHHHH
Q 040385 1 WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWN 80 (827)
Q Consensus 1 W~~~W~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgpIdNs~L~~~~~~~~~~~~~~l~~~l~~~~Dy~~vp~~vW~ 80 (827)
||++|++||+++.++...++.. ..+||||||++|+... + +..||++|.++.||++||++||+
T Consensus 43 W~~~w~~~v~~~~~~~~~~~~~------------~~~pGPIDNs~L~~~~-----~-~~~Lk~~l~e~~Dy~~vp~~vW~ 104 (231)
T 3jyu_A 43 WFKQWKKYVGFDSWDMYNVGEH------------NLFPGPIDNSGLFSDP-----E-SQTLKEHLIDELDYVLVPAEAWN 104 (231)
T ss_dssp HHHHHHHHHTSSSCCTTTTTCG------------GGCCCSBCCGGGEEET-----T-TTEECSSCCBTTTEEEEEHHHHH
T ss_pred HHHHHHHHhccccccccccccc------------CCCCCcEehHHHhCcC-----C-CcccccccccCCCEEEECHHHHH
Confidence 9999999999877543322222 2679999999999742 1 46899999999999999999999
Q ss_pred HHHHHhc---CCCccceEEcccCCCcceeeEEEeceEEEEEEcCCCC-eeEEEecccccHHHHHHHHHHHhCCCCc-cEE
Q 040385 81 QLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQLLVMPRGE-CSTIRISKKETIGELHRRACSIFYLNLE-QIC 155 (827)
Q Consensus 81 ~l~~wYG---ggp~i~R~Vi~~~~~~~~~~vElyP~~l~~~~~~~~~-~~~~~~Sk~~ti~~l~~~~~~~f~i~~~-~~R 155 (827)
+|++||| |||+|.|+||..+...+++.||+||+.|+++.+.+.. ..++.+||.+||.+|++++|++|+|+.+ ++|
T Consensus 105 ~l~~wYG~~~gg~~I~R~vi~~~~~~~~~~vEvyP~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~R 184 (231)
T 3jyu_A 105 KLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETR 184 (231)
T ss_dssp HHHHHHCBCTTCCCCEEEEEEECSSSCEEEECCSCEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHTTCCTTSCEE
T ss_pred HHHHHhCCCCCCCceEEEEeccCCCCCcceEEEecceEEEEecCCCCceEEEEecccCcHHHHHHHHHHHhCCCCCCeEE
Confidence 9999999 8899999999988667789999999999999887643 3568899999999999999999999987 899
Q ss_pred EEEeeCCccccccccccccccccccCCCCeEEEEEEecCCCCcccCCc
Q 040385 156 IWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSSI 203 (827)
Q Consensus 156 lW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~~~~~g~~~~~~~ 203 (827)
||++++.++.++|.+.+.||++++|+++|.||+|+++. | |+||+.
T Consensus 185 LW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~-d--g~WP~~ 229 (231)
T 3jyu_A 185 LWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNE-D--GTWPRQ 229 (231)
T ss_dssp EEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCT-T--SCCCC-
T ss_pred EEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecC-C--CCCCcc
Confidence 99999999999999999999999999999999999984 7 789864
No 12
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=100.00 E-value=4.2e-35 Score=300.84 Aligned_cols=178 Identities=32% Similarity=0.547 Sum_probs=154.9
Q ss_pred ChHHHHHhccCCCCCCCCCCCccccccccCCCCCCCCCCcccCcccccccccCCCCCCccccccccCCCcEEEcCHHHHH
Q 040385 1 WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWN 80 (827)
Q Consensus 1 W~~~W~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgpIdNs~L~~~~~~~~~~~~~~l~~~l~~~~Dy~~vp~~vW~ 80 (827)
||++|++||+++.++...++.. ..+||||||++|+... + ...||++|.++.||++||++||+
T Consensus 34 W~~~w~~~v~~~~~~~~~~~~~------------~~~pGpIdNs~L~~~~-----~-~~~Lk~~l~e~~Dy~~vp~~vW~ 95 (217)
T 4a3p_A 34 WFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDG-----D-AQSLKEHLIDELDYILLPTEGWN 95 (217)
T ss_dssp HHHHHHHHHTCSTTCCTTTTCG------------GGCCCSBCCGGGBCCC---------CBCSSCCBTTTEEEEEHHHHH
T ss_pred HHHHHHHHhccccccccccccc------------CCCCCcEehHHhhCCC-----C-CcccCcCcccCCCEEEECHHHHH
Confidence 9999999999887644333332 2689999999999732 1 56899999999999999999999
Q ss_pred HHHHHhc---CCCccceEEcccCCCcceeeEEEeceEEEEEEcCCC-CeeEEEecccccHHHHHHHHHHHhCCCCc-cEE
Q 040385 81 QLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQLLVMPRG-ECSTIRISKKETIGELHRRACSIFYLNLE-QIC 155 (827)
Q Consensus 81 ~l~~wYG---ggp~i~R~Vi~~~~~~~~~~vElyP~~l~~~~~~~~-~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~-~~R 155 (827)
+|++||| |||+|.|+||..+. .+.||+||+.|+++.+++. ...++.+||.+||.+|++++|++|+|+.+ ++|
T Consensus 96 ~l~~wYG~~~ggp~I~R~vi~~~~---~~~vEvyP~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~R 172 (217)
T 4a3p_A 96 KLVSWYTLMEGQEPIARKVVEQGM---FCKVEVYLTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETR 172 (217)
T ss_dssp HHHHHHCBCTTCCCCEEEEEEETT---EEEECCSCEEEEEEETTEEEEEEEEEECTTSBHHHHHHHHHHHTTCCTTSCEE
T ss_pred HHHHHhCCCCCCCCcceeEEecCC---eeEEEEeccEEEEEecCCCCcceEEEEcccchHHHHHHHHHHHhCCCCCCceE
Confidence 9999999 89999999999864 3889999999999988764 45688999999999999999999999986 899
Q ss_pred EEEeeCCccccccccccccccccccCCCCeEEEEEEecCCCCcccCC
Q 040385 156 IWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLDNVNGTNCKSS 202 (827)
Q Consensus 156 lW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~~~~~g~~~~~~ 202 (827)
||+++..++.++|.+.++||++++|+++|.||+|++|. | |+||+
T Consensus 173 lW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~-d--g~WP~ 216 (217)
T 4a3p_A 173 LWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNE-D--GTWPR 216 (217)
T ss_dssp EEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCC-C---CCCC
T ss_pred EEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecC-C--CCCCC
Confidence 99999889999999999999999999999999999984 7 78985
No 13
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.83 E-value=2.4e-20 Score=200.48 Aligned_cols=79 Identities=27% Similarity=0.465 Sum_probs=65.3
Q ss_pred eeecCCeEEEEEeeeeecccccceeeeeEeccccccccccccccCC--------------------------C-------
Q 040385 718 LWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKN--------------------------S------- 764 (827)
Q Consensus 718 i~~lP~vLiihLkRF~~~~~~~~Ki~~~V~fPl~~Ldl~~~~~~~~--------------------------~------- 764 (827)
|.++|++|+||+.|| +...||-..|.||+ .||+.+++...- .
T Consensus 163 isrLP~yLtVq~vRF----gKkaKIlrkV~fp~-eLDvtdl~tdelr~~~vr~kl~e~e~~~~~k~~k~~~~~~~~~~~~ 237 (374)
T 2vhf_A 163 FAEAPSCLIIQMPRF----GKDFKLFKKIFPSL-ELNITDLLEDTPRQCRICGGLAMYECRECYDDPDISAGKIKQFCKT 237 (374)
T ss_dssp ESSCCSEEEEECCCC----SSSSSCCCCCBCCS-EECCGGGBSSSCCBCTTTSCBCCEECGGGTTCTTTTTTSCCEECHH
T ss_pred eecCCcceEEeeecc----CccccccCCCCCcc-hhccHhhcCcchhhccHhHHHHHHHHHHHHhhhhccccccccccch
Confidence 999999999999999 56679999999995 899998875310 0
Q ss_pred ----------------------------------CccceEEEEEEEEeecCCCcceEEEEEEe-CCCCCEEEEeCC
Q 040385 765 ----------------------------------SRRQLYELYALTNHYGGMGSGHYTAHIKL-LDENRWYNFDDS 805 (827)
Q Consensus 765 ----------------------------------~~~~~Y~L~aVi~H~G~~~~GHY~a~~k~-~~~~~W~~fnD~ 805 (827)
.....|+|+|||+ +++|||+||||. +.+++|+.||--
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~psg~yeL~aVlt----adsgHYvafVK~~~~d~~W~~FDsm 309 (374)
T 2vhf_A 238 CNTQVHLHPKRLNHKYNPVSLPKDLPDWDWRHGCIPCQNMELFAVLC----IETSHYVAFVKYGKDDSAWLFFDSM 309 (374)
T ss_dssp HHHHHTTSGGGTTCCCEECCC----------------CCEEEEEEEE----EETTEEEEEEECSSSTTCEEEEETT
T ss_pred hhhhhhhhhhhhcccccccccCccccccccccCCCCceeEEEEEEEE----ccCCceEEEEEecCCCCCeEEEech
Confidence 0126799999999 899999999996 347999999964
No 14
>1w6v_A Ubiquitin carboxyl-terminal hydrolase 15; UCH, USP, DUB, deubiquitylation, deubiquitinating enzyme, ubiquitin specific protease; NMR {Homo sapiens} SCOP: d.324.1.1
Probab=99.74 E-value=1.7e-18 Score=164.69 Aligned_cols=80 Identities=40% Similarity=0.787 Sum_probs=66.6
Q ss_pred ChHHHHHhccCCCCCCCCCCCccccccccCCCCCCCCCCcccCcccccccccCCCCCCccccccccCCCcEEEcCHHHHH
Q 040385 1 WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWN 80 (827)
Q Consensus 1 W~~~W~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgpIdNs~L~~~~~~~~~~~~~~l~~~l~~~~Dy~~vp~~vW~ 80 (827)
||++|++||+++..+....+ ....+||||||++|+... . ...||++|.++.||++||++||+
T Consensus 58 W~~~W~~yv~~~~~~~~~~~------------~~~~~pGpIDNs~Ll~~~-----~-~~~Lk~~L~e~~Dy~lVp~~vW~ 119 (141)
T 1w6v_A 58 WFKQWKKYVGFDSWDKYQMG------------DQNVYPGPIDNSGLLKDG-----D-AQSLKEHLIDELDYILLPTEGWN 119 (141)
T ss_dssp HHHHHHHHHTCSTTCCSSTT------------CSTTCCCSBCCTTTBCSS-----C-TTCBCSSCCTTTTEEEECHHHHH
T ss_pred HHHHHHHHhcCCcccccccc------------ccCCCCCCCcCHHHhCcC-----c-cccccccccCCCCEEEECHHHHH
Confidence 99999999998765432111 123689999999999742 1 46899999999999999999999
Q ss_pred HHHHHhc---CCCccceEEcc
Q 040385 81 QLHSWYG---GGPTLARKVIS 98 (827)
Q Consensus 81 ~l~~wYG---ggp~i~R~Vi~ 98 (827)
+|++||| |||+|.|+||.
T Consensus 120 ~L~~wYG~~~ggp~I~R~vi~ 140 (141)
T 1w6v_A 120 KLVSWYTLMEGQEPIARKVVE 140 (141)
T ss_dssp HHHHHSCBCTTCCCCEEECCC
T ss_pred HHHHHHCCCCCCCceeEeeec
Confidence 9999999 89999999985
No 15
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=99.29 E-value=1.7e-10 Score=133.15 Aligned_cols=296 Identities=16% Similarity=0.207 Sum_probs=203.1
Q ss_pred EEEecccccHHHHHHHHHHHhCCCCc-cEEEEEeeCCcccccccccccccccc--ccCCCCeEEEEEEecCCCCcccCCc
Q 040385 127 TIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTLDDA--NIQMDQDILVEVLDNVNGTNCKSSI 203 (827)
Q Consensus 127 ~~~~Sk~~ti~~l~~~~~~~f~i~~~-~~RlW~~~~~~~~~ll~~~~~tl~d~--~l~~~q~il~E~~~~~~g~~~~~~~ 203 (827)
.+.+++.+++.+|...+++.+|++++ ++++|.-...+..+.+++.+.|+.++ .|++|+.|++|..+. + +.
T Consensus 150 ~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~GdII~fQ~~~~-~-----~~- 222 (530)
T 2ylm_A 150 HIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGDIIVFQKDDP-E-----ND- 222 (530)
T ss_dssp EEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCTTEEEEEEECCG-G-----GG-
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhcccCCCEEEEEecCC-c-----cc-
Confidence 46789999999999999999999986 89999876666677777678899999 999999998986631 0 00
Q ss_pred ccccccccccccccccCCcccccccCCCcccCCCCCCCCCcccCCCCCccCCCCCCCCCCCCccccCCCCCccCcccCCC
Q 040385 204 QDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGN 283 (827)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~GL~NlGN 283 (827)
.+. +
T Consensus 223 ------------------~~~------------------------------------y---------------------- 226 (530)
T 2ylm_A 223 ------------------NSE------------------------------------L---------------------- 226 (530)
T ss_dssp ------------------GSS------------------------------------S----------------------
T ss_pred ------------------ccc------------------------------------C----------------------
Confidence 000 0
Q ss_pred ccchhhHHHhhhCcHHHHHHHHH---------------hhhhhhccCCCCcHHHHHHHHHHHHHhhhccccCCCceeccC
Q 040385 284 TCFMNSAIQCLVHTPEFARYFRE---------------DYRREINWQNPLGMVELLAFLLDGLHEDLNRVKHKPYIKSKD 348 (827)
Q Consensus 284 TCYmNSvLQcL~~~~~l~~~~l~---------------~~~~~~~~~n~~~~~Efl~~lLd~L~e~l~~~~~~~~~~~~~ 348 (827)
..++.+.+|+.+ .+.-.++..++. .++-..+-+.|.-+=..++ +.....
T Consensus 227 -----------~~v~~yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y--~~la~~va~~l~~dP~~lR---f~~~~~ 290 (530)
T 2ylm_A 227 -----------PTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNY--FQVAKTVAQRLNTDPMLLQ---FFKSQG 290 (530)
T ss_dssp -----------CSHHHHHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCH--HHHHHHHHHHHTSCGGGEE---EECCCT
T ss_pred -----------CCHHHHHHHHhcceEEEEeecCCCCCCCeEEEECCCCCH--HHHHHHHHHHhCCCchhEE---EEeccc
Confidence 000011111111 122233333322 3555555555544322211 111111
Q ss_pred CCCCCcHHHHHHHHHhhhccCCCceeecccceEeeeEecCCCCCeeeeecCceeEEEeCCCC---ccceEEEEEEcCCCC
Q 040385 349 ADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQAT---TTRTMTVTVFTSDGS 425 (827)
Q Consensus 349 ~~~~~~~~~a~e~~~~~~~~~~s~I~~lF~G~~~s~l~C~~C~~~s~~~e~F~~LsL~lp~~---~~~~~~~~~~~~~~~ 425 (827)
..+.+.+..+ .+.++.+.++| ....|+ ++++|++..|++|.. +.+.+.|+++.. .
T Consensus 291 ~~~~p~~~i~--------~~~~~~L~d~l--------~~~~~~----~~~~l~YevL~ipl~ElE~~r~~kv~w~~~--~ 348 (530)
T 2ylm_A 291 YRDGPGNPLR--------HNYEGTLRDLL--------QFFKPR----QPKKLYYQQLKMKITDFENRRSFKCIWLNS--Q 348 (530)
T ss_dssp TSCSCCSBCC--------TTCCSCHHHHS--------TTSCSS----SCCEEEEEECSSCHHHHHSBCCEEEEEECT--T
T ss_pred ccCCCCCccc--------cCCCCcHHHHh--------hcccCC----CCCeEEEEECCCCHHHHhhCceEEEEEECC--C
Confidence 1112211111 33445666666 224454 568999999999998 788888888843 3
Q ss_pred CcCeEEEEEecCCCcHHHHHHHHHhhcCCCC--CCcEEEEEEeCCceEEeccCccccccccCC--CCcEEEEEccCC---
Q 040385 426 ALPSTYTVTVPKHGRCRDLIQVLGNICSLKQ--SEELKVAEIQNHSIQRFLDDPLISLSTIKD--DDHLAAYRVPKL--- 498 (827)
Q Consensus 426 ~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~--~~~l~~~e~~~~~~~~~~~d~~~~l~~i~~--~d~i~~ye~~~~--- 498 (827)
..+.++.+.+||++++.||++++.+.++++. ...+.+.|+++|+|++++.+ ..++..|.+ ...+.++|+|..
T Consensus 349 ~~~~~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~-~~~i~~i~d~~~~~~rieeip~ee~~ 427 (530)
T 2ylm_A 349 FREEEITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQE-DELLECLSPATSRTFRIEEIPLDQVD 427 (530)
T ss_dssp SCEEEEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECT-TSBGGGSCCCTTCEEEEEECCGGGSS
T ss_pred CceEEEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCC-CcccccccccccceEEEEECCHHHhc
Confidence 3456999999999999999999999998863 67899999999999999984 568888887 888999999975
Q ss_pred --cccceEEEEeeeecccCcCccccccCceeeccceEEEeecCCCCCHHHHHHHHHHHhC
Q 040385 499 --VKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQSTVQRMLS 556 (827)
Q Consensus 499 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~~~~~~~~~~~s~~~i~~~v~~~l~ 556 (827)
.++...++++|...+. ...||.||++.|.. ..+..++++.+.+++.
T Consensus 428 ~~~~~~~li~V~hf~k~~----------~~~~G~PF~~~v~~--gEt~~~~k~Rl~~rlg 475 (530)
T 2ylm_A 428 IDKENEMLVTVAHFHKEV----------FGTFGIPFLLRIHQ--GEHFREVMKRIQSLLD 475 (530)
T ss_dssp CCTTTEEEEEEEEESSST----------TCEEEEEEEEEEET--TCCHHHHHHHHHHHHC
T ss_pred cCCCCcEEEEEEEeccCc----------ccccCCCeEEEecC--CCcHHHHHHHHHHHhC
Confidence 4456788999985432 24799999999984 4489999999988873
No 16
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=95.09 E-value=0.1 Score=45.10 Aligned_cols=74 Identities=11% Similarity=0.192 Sum_probs=55.3
Q ss_pred EEEeceEEEEEEcC-CCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeE
Q 040385 108 VEVYPLRLQLLVMP-RGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDI 186 (827)
Q Consensus 108 vElyP~~l~~~~~~-~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~i 186 (827)
|--.|..++|+... ......+.+...+||.+|++++....|+++++.||+. . +..|+| +.||.+++|+++..|
T Consensus 15 ~~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif-~----Gk~LkD-~~TL~dY~I~dgstL 88 (93)
T 3plu_A 15 VPRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQK-G----GSVLKD-HISLEDYEVHDQTNL 88 (93)
T ss_dssp -----CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEE-T----TEECCT-TSBTGGGTCCTTCEE
T ss_pred cCCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEe-C----CEEccC-cCCHHHcCCCCCCEE
Confidence 33456667776653 4556789999999999999999999999999999963 2 234655 689999999998765
Q ss_pred E
Q 040385 187 L 187 (827)
Q Consensus 187 l 187 (827)
-
T Consensus 89 h 89 (93)
T 3plu_A 89 E 89 (93)
T ss_dssp E
T ss_pred E
Confidence 4
No 17
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=94.85 E-value=0.12 Score=44.88 Aligned_cols=65 Identities=12% Similarity=0.063 Sum_probs=50.9
Q ss_pred eeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEE
Q 040385 125 CSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVE 189 (827)
Q Consensus 125 ~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E 189 (827)
...+.+...+||.+|++++....+|+++.-||....+......|.+.+++|.+++++.+..|.+.
T Consensus 29 ~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlv 93 (95)
T 2kjr_A 29 AFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVV 93 (95)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEE
T ss_pred EEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEE
Confidence 46788999999999999999999999999999754322212234455789999999999877654
No 18
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=94.47 E-value=0.19 Score=43.70 Aligned_cols=69 Identities=6% Similarity=0.043 Sum_probs=55.5
Q ss_pred CCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCC--ccccccccccccccccccCCCCeEEEEEE
Q 040385 123 GECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGH--RKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 123 ~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~--~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
.......+....||.+|+.++...|++++...||..+... .....|.+.+++|..+++.++..|.++..
T Consensus 22 ~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~d~ 92 (97)
T 1wjn_A 22 RQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVRWS 92 (97)
T ss_dssp SCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEECC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEEec
Confidence 3456788999999999999999999999999999855322 12333667789999999999999988743
No 19
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=94.15 E-value=0.17 Score=44.74 Aligned_cols=76 Identities=18% Similarity=0.154 Sum_probs=51.8
Q ss_pred EEEec---eEEEEEEcCC---CCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCcccccccccccccccccc-
Q 040385 108 VEVYP---LRLQLLVMPR---GECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANI- 180 (827)
Q Consensus 108 vElyP---~~l~~~~~~~---~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l- 180 (827)
-+.|| +.+++..... ....++.+...+||.+|++++...++++++.-| |.+-++ +++| ++||.++++
T Consensus 15 ~~~~~~~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QR-li~ggk----ll~D-~~TL~~ygI~ 88 (105)
T 4dbg_A 15 PEVSPTQDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQ-WVIGQR----LARD-QETLHSHGVR 88 (105)
T ss_dssp -----CCCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEE-EEETTE----EECT-TCBTGGGTCC
T ss_pred CCcCCCCcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEE-EeccCe----EccC-cCcHHHcCCC
Confidence 35566 3444444322 245678899999999999999999999999889 765332 4444 789999999
Q ss_pred CCCCeEEEE
Q 040385 181 QMDQDILVE 189 (827)
Q Consensus 181 ~~~q~il~E 189 (827)
+.|..+.+=
T Consensus 89 ~~G~t~hL~ 97 (105)
T 4dbg_A 89 QNGDSAYLY 97 (105)
T ss_dssp STTCEEEEE
T ss_pred CCCCEEEEE
Confidence 577766443
No 20
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=93.97 E-value=0.24 Score=43.18 Aligned_cols=64 Identities=13% Similarity=0.107 Sum_probs=50.7
Q ss_pred eeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCC--ccccccccccccccccccCCCCeEEEE
Q 040385 125 CSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGH--RKHALMNDMDRTLDDANIQMDQDILVE 189 (827)
Q Consensus 125 ~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~--~~~~ll~~~~~tl~d~~l~~~q~il~E 189 (827)
...+.+....||.+|++++...++|+++.-||.- .++ .....|.+.+++|.+++++.+..|.+-
T Consensus 28 ~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~-~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlv 93 (97)
T 2kj6_A 28 SADARFSPQMSVEAVKEKLWKKCGTSVNSMALEL-YDDSGSKVAVLSDDSRPLGFFSPFDGFRLHII 93 (97)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEE-ECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEE
T ss_pred EEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEE-ecCCCcccceecCCcCCHHHCCCCCCCEEEEE
Confidence 5678999999999999999999999999999964 332 112234455789999999999877654
No 21
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=93.49 E-value=0.51 Score=39.00 Aligned_cols=64 Identities=11% Similarity=0.216 Sum_probs=51.6
Q ss_pred CCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 122 RGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 122 ~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
......+.++..+||.+|++++....+++++..||. |. +..|.+ +.+|.++++..+..|.+-++
T Consensus 13 ~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~-~~----G~~L~d-~~tL~~~~i~~~~~l~l~~r 76 (79)
T 3phx_B 13 KGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT-FE----GKPLED-QLPLGEYGLKPLSTVFMNLR 76 (79)
T ss_dssp TSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEE-ET----TEECCT-TSBGGGGTCCTTCEEEEEEC
T ss_pred CCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEE-EC----CEECCC-CCcHHHCCCCCCCEEEEEEe
Confidence 445567889999999999999999999999988886 32 234555 78999999999988776554
No 22
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=93.36 E-value=0.26 Score=42.01 Aligned_cols=63 Identities=16% Similarity=0.050 Sum_probs=50.6
Q ss_pred eeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCcc--ccccccccccccccccCCCCeEEE
Q 040385 125 CSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRK--HALMNDMDRTLDDANIQMDQDILV 188 (827)
Q Consensus 125 ~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~--~~ll~~~~~tl~d~~l~~~q~il~ 188 (827)
...++++...||.+|+.++...+|++++.-||..+..... +.++ +.+++|.+++++.|..|-+
T Consensus 16 ~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l-~d~~tL~~Y~i~~g~~ihl 80 (86)
T 4b6w_A 16 VPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNM-ANDKQLGYYQCRDEFVIHV 80 (86)
T ss_dssp EEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSC-CTTSBGGGGTCCTTCEEEE
T ss_pred EEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEc-CCCCCHHHCCCCCCCEEEE
Confidence 4578899999999999999999999999999985543322 2334 5578999999999988744
No 23
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=93.33 E-value=0.25 Score=42.27 Aligned_cols=63 Identities=21% Similarity=0.274 Sum_probs=50.5
Q ss_pred CCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEE
Q 040385 122 RGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEV 190 (827)
Q Consensus 122 ~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~ 190 (827)
......+.++..+||.+|++++.+..+++.+..||. |. +..|.+ +.+|.++++..+..|.+-+
T Consensus 26 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~----Gk~L~D-~~tL~~~gi~~g~~i~l~~ 88 (91)
T 3v6c_B 26 TGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FA----GKQLED-GRTLSDYNIQKESTLHLVL 88 (91)
T ss_dssp TSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEE-ET----TEECCT-TCBTGGGTCCTTCEEEEEC
T ss_pred CCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEE-EC----CeECCC-cCcHHHCCCCCCCEEEEEE
Confidence 345567889999999999999999999999988886 32 234544 6899999999998776654
No 24
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=93.30 E-value=0.39 Score=39.09 Aligned_cols=64 Identities=20% Similarity=0.268 Sum_probs=51.6
Q ss_pred CCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 122 RGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 122 ~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
+.....+.++..+|+.+|++++.+.++++++..||. |. +..|.+ +.+|.++++..+..|.+-++
T Consensus 9 ~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~-~~----g~~L~d-~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 3a9j_A 9 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FA----GKQLED-GRTLSDYNIQRESTLHLVLR 72 (76)
T ss_dssp TSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE-ET----TEECCT-TCBTGGGTCCTTCEEEEEEC
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE-EC----CeECCC-CCcHHHcCCCCCCEEEEEEe
Confidence 344567888899999999999999999999999886 32 234544 68999999999988877765
No 25
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=93.30 E-value=0.27 Score=41.19 Aligned_cols=63 Identities=17% Similarity=0.183 Sum_probs=51.5
Q ss_pred CCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 123 GECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 123 ~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
.....+.++..+||.+|++++++..+++++..||+- . ...|.+ +.+|.++++.++..|.+-++
T Consensus 13 g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~-~----g~~L~d-~~tL~~~~i~~~~~i~l~~r 75 (85)
T 3n3k_B 13 GRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-A----GKQLED-GRTLSDYNIHNHSALYLLLK 75 (85)
T ss_dssp GCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE-T----BEECCT-TCBTTTTTCCTTCEEEEEEC
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE-C----CeECCC-CCCHHHCCCCCCCEEEEEEe
Confidence 345678889999999999999999999999999873 2 234544 67999999999988887776
No 26
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=93.08 E-value=0.43 Score=39.04 Aligned_cols=62 Identities=11% Similarity=0.183 Sum_probs=49.9
Q ss_pred CCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEE
Q 040385 122 RGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVE 189 (827)
Q Consensus 122 ~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E 189 (827)
......+.++..+|+.+|++++....+++++..||. |. +..|.+ +.+|.++++..+..|.+-
T Consensus 12 ~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~-~~----gk~L~d-~~tL~~~~i~~g~~i~l~ 73 (77)
T 2bwf_A 12 GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLI-YS----GKILKD-DQTVESYHIQDGHSVHLV 73 (77)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ET----TEECCT-TSBTGGGTCCTTCEEEEE
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEE-EC----CeEcCC-CCCHHHcCCCCCCEEEEE
Confidence 444567889999999999999999999999999985 32 234544 589999999998877664
No 27
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=92.94 E-value=0.46 Score=40.41 Aligned_cols=63 Identities=14% Similarity=0.233 Sum_probs=49.7
Q ss_pred CCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 122 RGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 122 ~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
+.....+.++..+||.+|++++....+++.+..||. | .+..|.+ +.+|.++++ .+..|.+-++
T Consensus 14 ~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi-~----~Gk~L~d-~~tL~~~~i-~g~~i~l~~~ 76 (90)
T 4dwf_A 14 DSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLI-Y----QGRVLQD-DKKLQEYNV-GGKVIHLVER 76 (90)
T ss_dssp TCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEE-E----TTEECCT-TSBGGGGTC-TTEEEEEEEC
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE-E----CCeECCC-CCCHHHcCC-CCcEEEEEec
Confidence 345567888999999999999999999999998886 3 2345655 789999999 7776666555
No 28
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=92.83 E-value=0.37 Score=41.66 Aligned_cols=62 Identities=18% Similarity=0.261 Sum_probs=51.1
Q ss_pred eeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 125 CSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 125 ~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
...+.++..+||.+|++++....+++++..||. |. +..|.+.+++|.++++..+..|.+-++
T Consensus 26 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~----Gk~L~D~~~tL~~ygI~~gstl~lv~r 87 (94)
T 2kan_A 26 QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLY-YS----GIELADDYRNLNEYGITEFSEIVVFLK 87 (94)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEE-ET----TEEECCTTSBHHHHTCCTTEEEEEEEC
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEE-EC----CEECCCCcccHHHCCCCCCCEEEEEEe
Confidence 567889999999999999999999999999985 33 235655338999999999988877766
No 29
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=92.63 E-value=0.49 Score=40.75 Aligned_cols=64 Identities=20% Similarity=0.269 Sum_probs=52.5
Q ss_pred CCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 122 RGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 122 ~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
+.....+.++..+||.+|++++.+.++++.+..||. |. ...|.+ +.+|.++++..+..|.+-++
T Consensus 10 ~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~-~~----G~~L~d-~~tL~~~~i~~~~~i~l~~r 73 (96)
T 3k9o_B 10 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FA----GKQLED-GRTLSDYNIQKESTLHLVLR 73 (96)
T ss_dssp TCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE-ET----TEECCT-TSBTGGGTCCTTCEEEEEEC
T ss_pred CCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEE-EC----CEECCC-CCcHHHcCCCCCCEEEEEEE
Confidence 345567889999999999999999999999999987 32 234544 67999999999998888777
No 30
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=92.62 E-value=0.43 Score=40.26 Aligned_cols=64 Identities=19% Similarity=0.179 Sum_probs=51.1
Q ss_pred CCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 122 RGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 122 ~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
......+.++..+||.+|++++....+++++..||. |. ...|.+ +.+|.++++..+..|.+-++
T Consensus 21 ~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~-~~----G~~L~d-~~tL~~~~i~~~~~i~l~~r 84 (88)
T 3dbh_I 21 TGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI-YS----GKQMND-EKTAADYKILGGSVLHLVLR 84 (88)
T ss_dssp TSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEE-ET----TEECCT-TSBGGGGTCCTTCEEEECCC
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEE-EC----CeECCC-CCcHHHcCCCCCCEEEEEEe
Confidence 445567889999999999999999999999888875 32 234655 78999999999887766544
No 31
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=92.51 E-value=0.56 Score=39.64 Aligned_cols=60 Identities=15% Similarity=0.278 Sum_probs=47.7
Q ss_pred CCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEE
Q 040385 122 RGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILV 188 (827)
Q Consensus 122 ~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~ 188 (827)
+.....+.++..+|+.+|++++....+++++..||. | .+..|.+ +.+|.++++ .+..|-+
T Consensus 26 ~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi-~----~Gk~L~D-~~tL~~~~i-~g~~i~l 85 (88)
T 4eew_A 26 DSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLI-Y----QGRVLQD-DKKLQEYNV-GGKVIHL 85 (88)
T ss_dssp TSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEE-E----TTEECCT-TSBGGGGTC-TTEEEEE
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE-E----CCEECCC-CCcHHHcCC-CCcEEEE
Confidence 345567889999999999999999999999988886 3 2345655 789999999 6766544
No 32
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=92.51 E-value=0.43 Score=39.87 Aligned_cols=64 Identities=20% Similarity=0.244 Sum_probs=51.9
Q ss_pred CCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 122 RGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 122 ~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
......+.++..+||.+|++++.+..+++++..||. |. ...|.+ +.+|.++++..+..|.+-++
T Consensus 12 ~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~-~~----g~~L~d-~~tL~~~~i~~~~~l~l~~r 75 (85)
T 3mtn_B 12 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FA----GKQLED-GRTLSDYNIQKWSTLFLLLR 75 (85)
T ss_dssp TSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEE-ET----TEECCT-TSBTGGGTCCTTCEEEEECC
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEE-EC----CEECCC-CCCHHHcCCCCCCEEEEEEE
Confidence 345567889999999999999999999999988887 32 234544 68999999999988877766
No 33
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=92.49 E-value=0.34 Score=40.86 Aligned_cols=63 Identities=16% Similarity=0.060 Sum_probs=51.1
Q ss_pred CCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 123 GECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 123 ~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
.....+.++..+||.+|++++.+..+++++..||. |. ...|.+ +++|.++++..+..|.+-++
T Consensus 17 g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~-~~----Gk~L~d-~~tL~~~~i~~g~~i~l~~~ 79 (87)
T 1wh3_A 17 GGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLE-FQ----GQVLQD-WLGLGIYGIQDSDTLILSKK 79 (87)
T ss_dssp TEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEE-ET----TEECCS-SSBHHHHTCCTTEEEEEEEC
T ss_pred CCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEE-EC----CEEccC-CCCHHHCCCCCCCEEEEEEe
Confidence 34557788899999999999999999999999986 32 234544 68999999999988877766
No 34
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=92.44 E-value=0.64 Score=37.71 Aligned_cols=64 Identities=19% Similarity=0.184 Sum_probs=51.3
Q ss_pred CCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 122 RGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 122 ~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
+.....+.++..+|+.+|++++.+..+++++..||. |. +..|.+ +.+|.++++..+..|.+-++
T Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~-~~----g~~L~d-~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 1ndd_A 9 TGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI-YS----GKQMND-EKTAADYKILGGSVLHLVLA 72 (76)
T ss_dssp TSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE-ET----TEECCT-TSBGGGGTCCTTCEEEEEEC
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEE-EC----CEECCC-CCcHHHcCCCCCCEEEEEEe
Confidence 344567888899999999999999999999998885 32 234544 68999999999988877665
No 35
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=92.38 E-value=0.51 Score=41.28 Aligned_cols=61 Identities=11% Similarity=0.233 Sum_probs=49.8
Q ss_pred eeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 125 CSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 125 ~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
...+.++..+||.+|++++.+..+++++..||. |. +..|.+ +++|.++++..+..|.+-.+
T Consensus 33 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~----Gk~L~D-~~tL~~ygI~~gstI~l~~r 93 (100)
T 1yqb_A 33 KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLI-FA----GKILKD-PDSLAQCGVRDGLTVHLVIK 93 (100)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEE-ET----TEECCT-TSBHHHHTCCTTCEEEEEEC
T ss_pred cEEEEECCCCcHHHHHHHHHHHHCcChhhEEEE-EC----CEECCC-cCcHHHCCCCCCCEEEEEEc
Confidence 357788899999999999999999999999985 32 234544 68999999999988877665
No 36
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.24 E-value=0.62 Score=41.81 Aligned_cols=76 Identities=13% Similarity=0.244 Sum_probs=62.8
Q ss_pred eceEEEEEEcCCCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEE
Q 040385 111 YPLRLQLLVMPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEV 190 (827)
Q Consensus 111 yP~~l~~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~ 190 (827)
+...+++...+.....++.++...|+.+|++.+...|+++.+..||- |. +..|.| +.||.++++..+..|=++.
T Consensus 14 ~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLI-y~----GKiLKD-~eTL~~~gIk~g~TIhLvi 87 (118)
T 2daf_A 14 SLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIR-YS----GKILKN-NETLVQHGVKPQEIVQVEI 87 (118)
T ss_dssp SCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEE-ET----TEEECS-SCCHHHHSCCSSCEEEEEE
T ss_pred ccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEE-EC----CeEcCC-cchHHHcCCCCCCEEEEEE
Confidence 44667776677777789999999999999999999999999998863 32 345655 6799999999999888888
Q ss_pred Ee
Q 040385 191 LD 192 (827)
Q Consensus 191 ~~ 192 (827)
..
T Consensus 88 ~s 89 (118)
T 2daf_A 88 FS 89 (118)
T ss_dssp EE
T ss_pred ec
Confidence 85
No 37
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=92.23 E-value=0.45 Score=40.44 Aligned_cols=64 Identities=22% Similarity=0.274 Sum_probs=51.2
Q ss_pred CCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 122 RGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 122 ~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
......+.++..+||.+|++++.+..+++++..||. |. +..|.+ +.+|.++++..+..|.+-++
T Consensus 18 ~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~----Gk~L~D-~~tL~~~gi~~g~~i~l~~r 81 (88)
T 1sif_A 18 TGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLI-FA----GKQLED-GRTLSDYNIQKESTLHLVLR 81 (88)
T ss_dssp TSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEE-ET----TEECCT-TSBSGGGTCCTTCEEEEEC-
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEE-EC----CEECCC-CCcHHHcCCCCCCEEEEEEe
Confidence 345567888999999999999999999999998986 32 234544 68999999999988877766
No 38
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=92.22 E-value=0.61 Score=40.84 Aligned_cols=63 Identities=11% Similarity=0.248 Sum_probs=50.7
Q ss_pred CCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 123 GECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 123 ~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
.....+.++..+||.+|++++....+++++..||. |. +..|.+ +++|.++++..+..|.+-.+
T Consensus 34 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~----Gk~L~D-~~tL~~~gI~~g~~I~l~~~ 96 (101)
T 2klc_A 34 KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLI-FA----GKILKD-QDTLSQHGIHDGLTVHLVIK 96 (101)
T ss_dssp SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEE-ET----TEEECT-TCCTGGGTCCTTCEEEEEEC
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEE-EC----CEECCC-cCcHHHcCCCCCCEEEEEEc
Confidence 44567888999999999999999999999999985 32 234544 68999999999988777654
No 39
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=92.15 E-value=0.57 Score=42.58 Aligned_cols=66 Identities=11% Similarity=0.137 Sum_probs=50.6
Q ss_pred eeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCcc-ccccccccccccccccCCCCeEEEEE
Q 040385 125 CSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRK-HALMNDMDRTLDDANIQMDQDILVEV 190 (827)
Q Consensus 125 ~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~-~~ll~~~~~tl~d~~l~~~q~il~E~ 190 (827)
...+.+....||.+|+.++....||+++..||...-...+ ...|.+.+++|.++++..+..|.+-.
T Consensus 19 ~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd 85 (122)
T 1t0y_A 19 PMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVD 85 (122)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEE
T ss_pred cEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEe
Confidence 4678889999999999999999999999999974321111 11233457899999999998776653
No 40
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=92.13 E-value=0.44 Score=41.19 Aligned_cols=65 Identities=17% Similarity=0.046 Sum_probs=49.4
Q ss_pred eeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCC-ccccccccccccccccccCCCCeEEEE
Q 040385 125 CSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGH-RKHALMNDMDRTLDDANIQMDQDILVE 189 (827)
Q Consensus 125 ~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~-~~~~ll~~~~~tl~d~~l~~~q~il~E 189 (827)
...+.+...+||.+|++++....+++++..||...-.. .....|.+.+++|.++++..+..|.+.
T Consensus 20 ~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~ 85 (95)
T 1v6e_A 20 RSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI 85 (95)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEB
T ss_pred eEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEE
Confidence 46788999999999999999999999999998743211 111123344789999999998876554
No 41
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=92.06 E-value=0.44 Score=40.53 Aligned_cols=64 Identities=19% Similarity=0.195 Sum_probs=52.3
Q ss_pred CCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 122 RGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 122 ~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
+.....+.++..+||.+|++++....+++++..||. | .+..|.+ +.+|.++++..+..|.+-++
T Consensus 9 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~----~Gk~L~D-~~tL~~~~i~~g~~l~l~~r 72 (88)
T 4fbj_B 9 TGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI-Y----SGKQMND-EKTAADYKILGGSVLHLVLA 72 (88)
T ss_dssp TCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEE-E----TTEECCT-TSBTTTTTCCTTCEEEEECB
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEE-E----CCeECCC-CCcHHHcCCCCCCEEEEEEE
Confidence 345567888999999999999999999999988885 3 2345655 78999999999998877766
No 42
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=92.02 E-value=0.54 Score=41.47 Aligned_cols=60 Identities=12% Similarity=0.252 Sum_probs=49.7
Q ss_pred eEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 126 STIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 126 ~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
..+.+...+||.+|++++.+..+++.+..||. |. ...|.+ +++|.++++..+..|.+-.+
T Consensus 29 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~----Gk~L~D-~~tL~~~gi~~g~~i~l~~~ 88 (106)
T 1wx7_A 29 EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLI-FA----GKILKD-PDSLAQCGVRDGLTVHLVIK 88 (106)
T ss_dssp EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEE-ET----TEECCT-TSCHHHHTCCTTEEEEEEEC
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChhhEEEE-EC----CEECCC-cCcHHHcCCCCCCEEEEEEc
Confidence 57888899999999999999999999999985 32 234544 68999999999988877766
No 43
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=91.86 E-value=0.77 Score=39.76 Aligned_cols=64 Identities=20% Similarity=0.250 Sum_probs=52.2
Q ss_pred CCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEEe
Q 040385 123 GECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLD 192 (827)
Q Consensus 123 ~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~~ 192 (827)
.....+.++..+||.+|++++.+..+++++..||. |. +..|.+ +.+|.++++..+..|.+..+.
T Consensus 10 g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~-~~----Gk~L~D-~~tL~~~gi~~g~~i~l~~~~ 73 (98)
T 1yx5_B 10 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FA----GKQLED-GRTLSDYNIQKESTLHLVLRL 73 (98)
T ss_dssp SCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEE-ET----TEECCT-TSBTGGGTCCTTCEEEEEECC
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEE-EC----CEECCC-CCCHHHcCCCCCCEEEEEEeC
Confidence 34567888899999999999999999999998885 32 234544 789999999999988887773
No 44
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=91.78 E-value=0.46 Score=41.69 Aligned_cols=63 Identities=10% Similarity=0.054 Sum_probs=51.2
Q ss_pred CeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 124 ECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 124 ~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
....+.+...+||.+|++++....++++++.||. |.+ ..|.+.+++|.++++..+..|.+..+
T Consensus 22 ~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~g----k~L~D~~~tL~~ygI~~g~~l~l~~~ 84 (102)
T 1v5o_A 22 VTFSLQVNPDFELSNFRVLCELESGVPAEEAQIV-YME----QLLTDDHCSLGSYGLKDGDMVVLLQK 84 (102)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEE-ETT----EEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEE-ECC----EECCCCcccHHHCCCCCCCEEEEEEC
Confidence 3456888999999999999999999999988886 322 35666567999999999988877765
No 45
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=91.77 E-value=0.54 Score=39.75 Aligned_cols=61 Identities=11% Similarity=0.206 Sum_probs=47.8
Q ss_pred CCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEE
Q 040385 123 GECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVE 189 (827)
Q Consensus 123 ~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E 189 (827)
.....+.++..+||.+|++++....+++++..||. |. +..|.+ +++|.++++..+..|.+-
T Consensus 21 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~----Gk~L~D-~~tL~~~gi~~g~~l~l~ 81 (85)
T 2kd0_A 21 GKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLI-FK----GKVLVE-TSTLKQSDVGSGAKLMLM 81 (85)
T ss_dssp TEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEE-ET----TEECCT-TCBTTTTTCCTTEEEEEE
T ss_pred CEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE-EC----CeECCC-cCCHHHCCCCCCCEEEEE
Confidence 34456778889999999999999999999988885 32 334544 689999999988776553
No 46
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=91.69 E-value=0.74 Score=42.04 Aligned_cols=63 Identities=11% Similarity=0.218 Sum_probs=51.6
Q ss_pred CCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 123 GECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 123 ~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
.....+.++...||.+|++++....+++.+..||. |. +..|.+ +++|.++++..+..|.+-.+
T Consensus 41 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~----Gk~L~D-~~tL~dygI~~gstI~lv~~ 103 (125)
T 1j8c_A 41 KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLI-FA----GKILKD-QDTLIQHGIHDGLTVHLVIK 103 (125)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEE-ET----TEEEST-TSCGGGTTCSSSEEEEEEEC
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEE-EC----CEEcCC-CCCHHHcCCCCCCEEEEEec
Confidence 44567889999999999999999999999999985 32 334544 68999999999988877766
No 47
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=91.54 E-value=1.2 Score=36.44 Aligned_cols=59 Identities=24% Similarity=0.371 Sum_probs=47.8
Q ss_pred EEE-ecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 127 TIR-ISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 127 ~~~-~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
.+. ++..+|+.+|++++....+++++..||. |. +..|.+ +++|.++++..+..|.+-++
T Consensus 17 ~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~-~~----g~~L~d-~~tL~~~~i~~g~~i~l~~r 76 (78)
T 2faz_A 17 TVDSLSRLTKVEELRRKIQELFHVEPGLQRLF-YR----GKQMED-GHTLFDYEVRLNDTIQLLVR 76 (78)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ET----TEECCT-TCBTTTTTCCTTCEEEEEEC
T ss_pred EEeccCCCCCHHHHHHHHHHHHCcChhhEEEE-EC----CEECCC-CCCHHHcCCCCCCEEEEEEe
Confidence 677 8899999999999999999999999986 32 234544 68999999999887766544
No 48
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=91.52 E-value=0.85 Score=38.66 Aligned_cols=63 Identities=11% Similarity=0.205 Sum_probs=51.1
Q ss_pred CCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 123 GECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 123 ~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
.....+.++..+||.+|++++....+++++..||. |. +..|.+ +++|.++++..+..|.+-.+
T Consensus 14 g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~----Gk~L~D-~~tL~~~~I~~g~~i~l~~~ 76 (88)
T 2hj8_A 14 GRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT-FE----GKPLED-QLPLGEYGLKPLSTVFMNLR 76 (88)
T ss_dssp SCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEE-SS----SSCCCT-TSBHHHHHCSTTCEEEEEEC
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEE-EC----CEECCC-CCcHHHcCCCCCCEEEEEEE
Confidence 34567788899999999999999999999999986 32 234544 68999999999988877665
No 49
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=91.43 E-value=0.76 Score=45.14 Aligned_cols=76 Identities=18% Similarity=0.232 Sum_probs=57.2
Q ss_pred EEeceEEEEEEcCCCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEE
Q 040385 109 EVYPLRLQLLVMPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILV 188 (827)
Q Consensus 109 ElyP~~l~~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~ 188 (827)
+-|-..+.|. ........+.++..+||.+|++++....+++++..||. |. ...|.+ +.+|.++++..+..|.+
T Consensus 102 d~~eMqI~VK-tl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi-~~----Gk~L~D-~~tL~dygI~~gstI~L 174 (189)
T 3q3f_A 102 DHYGGQIFVK-TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FA----GKQLED-GRTLSDYNIQKESTLHL 174 (189)
T ss_dssp CCCCEEEEEE-CTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEE-ET----TEECCT-TCBGGGGTCCTTCEEEE
T ss_pred cccceeeeee-cCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEE-EC----CEECCC-CCCHHHCCCCCCCEEEE
Confidence 4444444443 23445678899999999999999999999999888876 32 345655 78999999999988777
Q ss_pred EEE
Q 040385 189 EVL 191 (827)
Q Consensus 189 E~~ 191 (827)
-++
T Consensus 175 vlr 177 (189)
T 3q3f_A 175 VLR 177 (189)
T ss_dssp CCC
T ss_pred EEE
Confidence 655
No 50
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=91.40 E-value=0.57 Score=40.10 Aligned_cols=64 Identities=9% Similarity=0.130 Sum_probs=49.9
Q ss_pred CCeeEEEeccc-----ccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 123 GECSTIRISKK-----ETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 123 ~~~~~~~~Sk~-----~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
.....+.+... .||.+|++++....+++++..||. |. +..|.+.+.+|.++++..+..|.+...
T Consensus 16 ~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~-~~----Gk~L~D~~~~L~~~~i~~g~~i~l~~~ 84 (92)
T 1wxv_A 16 NEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLI-FK----GKSLKEMETPLSALGIQDGCRVMLIGK 84 (92)
T ss_dssp SSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEE-ET----TEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred CEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEE-EC----CeecCCCcccHHHCCCCCCCEEEEEec
Confidence 44456777774 999999999999999999988885 32 345666677899999998887766533
No 51
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=91.15 E-value=0.41 Score=41.20 Aligned_cols=63 Identities=17% Similarity=0.218 Sum_probs=50.5
Q ss_pred CCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 123 GECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 123 ~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
.....+.++..+||.+|++++.+..+++++..||. |. +..|.+ +++|.++++..+..|.+-++
T Consensus 27 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~----Gk~L~D-~~tL~~y~I~~gstI~lv~r 89 (93)
T 2l7r_A 27 QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVL-LA----GAPLED-EATLGQCGVEALTTLEVAGR 89 (93)
T ss_dssp SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEE-ET----TEECCT-TSBHHHHTCCSSCEEEEECC
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEE-EC----CEECCC-CCcHHHCCCCCCCEEEEEEe
Confidence 45567888999999999999999999999988886 32 234544 68999999999988776654
No 52
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=91.07 E-value=0.58 Score=40.65 Aligned_cols=64 Identities=20% Similarity=0.280 Sum_probs=51.1
Q ss_pred CCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 122 RGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 122 ~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
+.....+.+...+||.+|++++.+..+++++..||. |. +..|.+ +++|.++++..+..|.+-++
T Consensus 31 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~----Gk~L~D-~~tL~~~~i~~g~~i~l~~r 94 (98)
T 4hcn_B 31 TGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI-FA----GKQLED-GRTLSDYNIQKESTLHLVLR 94 (98)
T ss_dssp TCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEE-ET----TEECCT-TCBSGGGTCCTTEEEEEECB
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEE-EC----CEECCC-CCcHHHCCCCCCCEEEEEEe
Confidence 445567889999999999999999999999988886 32 234544 68999999999887766554
No 53
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=90.86 E-value=1.2 Score=37.24 Aligned_cols=63 Identities=19% Similarity=0.213 Sum_probs=50.1
Q ss_pred CCeeEEEecccccHHHHHHHHHHH---hCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 123 GECSTIRISKKETIGELHRRACSI---FYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 123 ~~~~~~~~Sk~~ti~~l~~~~~~~---f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
.....+.++..+||.+|++++... -+++.+..||. |. +..|.+ +.+|.++++..+..|.+-.+
T Consensus 15 g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi-~~----Gk~L~D-~~tL~~~~i~~g~~i~l~~~ 80 (85)
T 2wyq_A 15 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLI-YA----GKILSD-DVPIRDYRIDEKNFVVVMVT 80 (85)
T ss_dssp SCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEE-ET----TEECCT-TSBGGGGCCCTTSEEEEEEC
T ss_pred CCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEE-EC----CEECcC-CCCHHHcCCCCCCEEEEEEc
Confidence 445678889999999999999998 57998998985 32 335644 68999999999988877655
No 54
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.79 E-value=0.87 Score=37.57 Aligned_cols=61 Identities=13% Similarity=0.266 Sum_probs=48.1
Q ss_pred CCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEE
Q 040385 123 GECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVE 189 (827)
Q Consensus 123 ~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E 189 (827)
.....+.++..+|+.+|++++.+..+++++..||. |. +..|.+ +.+|.++++..+..|.+-
T Consensus 17 g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~-~~----gk~L~d-~~tL~~~~i~~g~~i~l~ 77 (81)
T 2dzi_A 17 GRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLL-FK----GKALAD-GKRLSDYSIGPNSKLNLV 77 (81)
T ss_dssp SCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEE-ET----TEECCT-TSBGGGGTCCSSBCCEEE
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEE-EC----CeECCC-CCcHHHcCCCCCCEEEEE
Confidence 34557788899999999999999999999988875 32 234544 689999999988766554
No 55
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=90.77 E-value=0.99 Score=40.20 Aligned_cols=64 Identities=20% Similarity=0.269 Sum_probs=51.6
Q ss_pred CCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 122 RGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 122 ~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
......+.++..+||.+|++++.+..+++++..||. |. ...|.+ +++|.++++..+..|.+-++
T Consensus 44 ~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~----Gk~L~D-~~tL~~~gI~~gs~I~l~~r 107 (111)
T 3vdz_A 44 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FA----GKQLED-GRTLSDYNIQKESTLHLVLR 107 (111)
T ss_dssp SSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ET----TEECCT-TSBTTTTTCCTTCEEEEEEC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEE-EC----CEECCC-CCcHHHCCCCCCCEEEEEEe
Confidence 345567888999999999999999999999999986 32 234544 67999999999988777655
No 56
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=90.74 E-value=1.2 Score=38.33 Aligned_cols=65 Identities=17% Similarity=0.258 Sum_probs=50.7
Q ss_pred CCCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 121 PRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 121 ~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
.+.....+.+.+..++..|+++.|+..+++++.+|+. |.+. .+ ..+.|+.++++.++..|-+=..
T Consensus 13 ~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~-FdG~----~l-~~~~Tp~dl~medgD~Idv~~~ 77 (91)
T 2io0_B 13 QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR-FDGQ----PI-NETDTPAQLEMEDEDTIDVFQQ 77 (91)
T ss_dssp TTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEE-ETTE----EC-CTTCCTTTTTCCTTEEEEEEEC
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEE-ECCE----Ec-CCCCCHHHcCCCCCCEEEEEEe
Confidence 3455678999999999999999999999999999986 3332 23 3467999999998876644433
No 57
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=90.68 E-value=1.4 Score=37.17 Aligned_cols=62 Identities=27% Similarity=0.367 Sum_probs=50.2
Q ss_pred CeeEE-EecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 124 ECSTI-RISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 124 ~~~~~-~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
....+ .++..+||.+|++++....+++++..||. |. ...|.+ +++|.++++..+..|.+-++
T Consensus 19 ~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~-~~----gk~L~d-~~tL~~~~i~~g~~i~l~~~ 81 (89)
T 1wy8_A 19 KTCTIEDVSRKATIEELRERVWALFDVRPECQRLF-YR----GKQLEN-GYTLFDYDVGLNDIIQLLVR 81 (89)
T ss_dssp CEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEE-ET----TEECCS-SSBHHHHTCCTTCEEEEEEC
T ss_pred ceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEE-EC----CeECCC-CCCHHHCCCCCCCEEEEEEe
Confidence 35677 48899999999999999999999999986 22 234544 68999999999988877766
No 58
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=90.68 E-value=1 Score=40.06 Aligned_cols=63 Identities=21% Similarity=0.275 Sum_probs=51.0
Q ss_pred CCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 123 GECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 123 ~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
.....+.++...||.+|++++.+..+++++..||. |. ...|.+ +++|.++++..+..|.+-++
T Consensus 45 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~----Gk~L~D-~~tL~~~gI~~gs~I~l~~r 107 (111)
T 2ojr_A 45 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FA----GKQLED-GRTLSDYNIQKESTLHLVLR 107 (111)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEE-ET----TEECCS-SCBTTTTTCCTTCEEEEEEC
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEE-EC----CEECCC-CCcHHHcCCCCCCEEEEEEe
Confidence 34557788899999999999999999999999885 32 234544 78999999999988877765
No 59
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=90.64 E-value=0.64 Score=40.69 Aligned_cols=60 Identities=17% Similarity=0.159 Sum_probs=48.7
Q ss_pred CCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEE
Q 040385 123 GECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILV 188 (827)
Q Consensus 123 ~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~ 188 (827)
.....+.+...+|+.+|++++...++++++..||- |. +..|.| ++||.++++..+..|++
T Consensus 29 ~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI-~~----GKiL~D-~~TL~~y~I~~gsti~v 88 (100)
T 1wju_A 29 DRKNLLETRLHITGRELRSKIAETFGLQENYIKIV-IN----KKQLQL-GKTLEEQGVAHNVKAMV 88 (100)
T ss_dssp SSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEE-ET----TEECCT-TSBHHHHTCCSSEEEEE
T ss_pred CcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEE-eC----CeECCC-CCcHHHcCCCCCCEEEE
Confidence 34568888999999999999999999999988874 33 335654 68999999999987743
No 60
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=90.63 E-value=0.85 Score=38.44 Aligned_cols=62 Identities=15% Similarity=0.230 Sum_probs=49.8
Q ss_pred CCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccc-cccccccccccccCCCCeEEEEE
Q 040385 123 GECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHAL-MNDMDRTLDDANIQMDQDILVEV 190 (827)
Q Consensus 123 ~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~l-l~~~~~tl~d~~l~~~q~il~E~ 190 (827)
.....+.++..+||.+|++++....+++++..||. |. +.. |.+ +++|.++++..+..|.+-+
T Consensus 20 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~----Gk~lL~D-~~tL~~y~I~~gs~i~lv~ 82 (84)
T 2kk8_A 20 GSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLI-VD----GIVILRE-DLTVEQCQIVPTSDIQLEV 82 (84)
T ss_dssp SCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEE-ET----TEECCCS-SSBHHHHTCCTTSCEEEEE
T ss_pred CcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEE-EC----CEEecCC-cCCHHHcCCCCCCEEEEEE
Confidence 34567889999999999999999999999999986 32 234 544 6899999999988776643
No 61
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=90.37 E-value=0.25 Score=43.41 Aligned_cols=62 Identities=11% Similarity=0.183 Sum_probs=48.9
Q ss_pred CCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEE
Q 040385 122 RGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVE 189 (827)
Q Consensus 122 ~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E 189 (827)
......+.++..+||.+|++++.+..+++++..||. |. +..|.+ +.+|.++++..+..|.+-
T Consensus 36 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~----Gk~L~D-~~tL~~~gI~~g~tI~lv 97 (101)
T 3m63_B 36 GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLI-YS----GKILKD-DQTVESYHIQDGHSVHLV 97 (101)
T ss_dssp SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEE-ET----TEECCT-TSBTTTTTCCTTEEEEEC
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEE-EC----CEECCC-cCcHHHCCCCCCCEEEEE
Confidence 444556788899999999999999999999888886 32 345655 789999999988776553
No 62
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=90.29 E-value=0.55 Score=41.54 Aligned_cols=64 Identities=16% Similarity=0.244 Sum_probs=52.0
Q ss_pred CCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 122 RGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 122 ~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
......+.+...+||.+|++++....+++++..||. |. +..|.+ +.+|.++++..+..|.+-++
T Consensus 10 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~----Gk~L~D-~~tL~~~~i~~g~~i~lv~~ 73 (106)
T 3m62_B 10 KKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLI-YS----GKVLQD-SKTVSECGLKDGDQVVFMVS 73 (106)
T ss_dssp TCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEE-ET----TEECCT-TSBTTTTTCCTTCEEEEECC
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEE-EC----CEECCC-cCCHHHcCCCCCCEEEEEEc
Confidence 344567788899999999999999999999988875 32 345655 78999999999998887766
No 63
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=90.06 E-value=0.76 Score=40.20 Aligned_cols=61 Identities=16% Similarity=0.278 Sum_probs=49.2
Q ss_pred CCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEE
Q 040385 123 GECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVE 189 (827)
Q Consensus 123 ~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E 189 (827)
.....+.+...+||.+|++++....++++++.||. |. +..|.| +.||.++++..+..|-+.
T Consensus 38 Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi-~~----Gk~L~D-~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 38 GKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLK-KW----YTIFKD-HVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp SSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEE-ET----TEECCS-SCBHHHHTCCTTEEEEEE
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEE-EC----CEECCC-CCCHHHcCCCCCCEEEEE
Confidence 45567889999999999999999999999999986 22 335655 789999999988766543
No 64
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=89.72 E-value=0.95 Score=37.26 Aligned_cols=64 Identities=9% Similarity=0.136 Sum_probs=50.6
Q ss_pred CCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 122 RGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 122 ~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
+.....+.++..+|+.+|++++++..+++++..||. |. +..|.+ ++||.++++..+..|.+-++
T Consensus 12 ~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~-~~----G~~L~d-~~tl~~~~i~~~~~i~l~~~ 75 (79)
T 2uyz_B 12 DSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFL-FE----GQRIAD-NHTPKELGMEEEDVIEVYQE 75 (79)
T ss_dssp TCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE-ET----TEECCT-TCCHHHHTCCTTEEEEEEEC
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEE-EC----CEEeCC-CCCHHHcCCCCCCEEEEEEe
Confidence 345567889999999999999999999999998884 32 234544 68999999999887766544
No 65
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=89.68 E-value=0.59 Score=40.29 Aligned_cols=63 Identities=11% Similarity=0.293 Sum_probs=49.6
Q ss_pred CCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 123 GECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 123 ~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
.....+.+...+||.+|++++....+++.+..||. |. ...|.+ +++|.++++..+..|.+-++
T Consensus 26 g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~----Gk~L~D-~~tL~~~gi~~g~~i~l~~~ 88 (96)
T 1wx8_A 26 QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLI-FT----GKILRD-QDILSQRGILDGSTVHVVVR 88 (96)
T ss_dssp SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCE-ET----TEECCT-TSCHHHHTCCTTEEEECCBC
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE-EC----CEECCC-cCCHHHCCCCCCCEEEEEEe
Confidence 45567888999999999999999999999988875 32 234544 68999999998877655544
No 66
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=88.89 E-value=0.9 Score=40.42 Aligned_cols=62 Identities=11% Similarity=0.201 Sum_probs=49.8
Q ss_pred CeeEEEecc-cccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 124 ECSTIRISK-KETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 124 ~~~~~~~Sk-~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
....+.++. .+||.+|++++....+++++..||. |. +..|.+ +.+|.++++..+..|.+-++
T Consensus 41 ~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~-~~----Gk~L~D-~~tL~~y~I~~g~~l~l~~r 103 (111)
T 1we6_A 41 QFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLS-GK----AGFLKD-NMSLAHYNVGAGEILTLSLR 103 (111)
T ss_dssp CCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEE-CS----SSBCCT-TSBTTTTTCSSSCEEEEECS
T ss_pred cEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEE-EC----CEECCC-CCcHHHCCCCCCCEEEEEEE
Confidence 345677887 8999999999999999999988886 32 235555 68999999999988877766
No 67
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=88.87 E-value=1.4 Score=38.04 Aligned_cols=71 Identities=11% Similarity=0.178 Sum_probs=53.6
Q ss_pred EEEEEc-CCCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 115 LQLLVM-PRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 115 l~~~~~-~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
++|... .......+.++..+||.+|+++++...+++++..||. |. +..|.+ +.||.++++..+..|.+-++
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLi-f~----Gk~L~d-~~tl~dy~i~~g~~I~l~~~ 93 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFL-FE----GQRIAD-NHTPKELGMEEEDVIEVYQE 93 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE-ET----TEECCT-TCCHHHHTCCTTCEEEEEES
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEE-EC----CeEcCC-CCCHHHCCCCCCCEEEEEEe
Confidence 344433 3345578889999999999999999999999998875 32 234544 68999999999887766544
No 68
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=88.34 E-value=1.5 Score=39.59 Aligned_cols=62 Identities=16% Similarity=0.162 Sum_probs=49.7
Q ss_pred CeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccC-------CCCeEEEEEE
Q 040385 124 ECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQ-------MDQDILVEVL 191 (827)
Q Consensus 124 ~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~-------~~q~il~E~~ 191 (827)
...++.+...+||.+|++++....+|+++.-||. |.+ ..|+| ++||.++++. .+..|-+-++
T Consensus 12 tti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi-~~G----k~LeD-~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 12 TTIFTDAKESSTVFELKRIVEGILKRPPEEQRLY-KDD----QLLDD-GKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp EEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEE-ETT----EECCT-TSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred EEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEE-ECC----eECCC-CCCHHHcCcccccccCCCCCEEEEEec
Confidence 3456788889999999999999999999999997 433 35644 7899999999 4666667677
No 69
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=88.33 E-value=1.6 Score=38.95 Aligned_cols=61 Identities=8% Similarity=0.076 Sum_probs=49.5
Q ss_pred eeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 125 CSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 125 ~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
...+.++..+||.+|++++....+++++..||. |. +..|.+ +.+|.++++..+..|.+-++
T Consensus 47 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~-~~----Gk~L~D-~~tL~~y~i~~g~~i~lv~r 107 (115)
T 1we7_A 47 GLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQ-YE----GIFIKD-SNSLAYYNMASGAVIHLALK 107 (115)
T ss_dssp EEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEE-ET----TEEECT-TSBHHHHTCCSSCEEEEEEC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE-EC----CEECCC-CCCHHHCCCCCCCEEEEEEE
Confidence 356778889999999999999999999998986 32 234544 68999999999988877766
No 70
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=88.28 E-value=1.6 Score=37.69 Aligned_cols=62 Identities=18% Similarity=0.288 Sum_probs=49.3
Q ss_pred CCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEE
Q 040385 122 RGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVE 189 (827)
Q Consensus 122 ~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E 189 (827)
+.....+.+.+..++..|+++.|+..+++++.+|+. |.+. .| ..+.|+.+++++++..|-+=
T Consensus 16 ~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~-FdG~----~l-~~~~Tp~dl~medgD~Idv~ 77 (94)
T 2io1_B 16 DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR-FDGQ----PI-NETDTPAQLEMEDEDTIDVF 77 (94)
T ss_dssp TSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE-ETTE----EC-CTTCCTTTTTCCTTCEEEEE
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEE-ECCE----Ec-CCCCCHHHcCCCCCCEEEEE
Confidence 445678899999999999999999999999999985 3332 24 34689999999998866443
No 71
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=88.28 E-value=1.7 Score=36.18 Aligned_cols=56 Identities=13% Similarity=0.132 Sum_probs=46.0
Q ss_pred eeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeE
Q 040385 125 CSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDI 186 (827)
Q Consensus 125 ~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~i 186 (827)
...+.+.+..++..|++..|+..+++.+.+|++ |.+. .+ ..+.|+.++++.++..|
T Consensus 20 ~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~-fdG~----~l-~~~~Tp~~l~medgD~I 75 (79)
T 3a4r_A 20 MLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFF-FDGT----KL-SGKELPADLGLESGDLI 75 (79)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEE-ETTE----EC-CSCCCHHHHTCCTTCEE
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcccEEEE-ECCE----Ec-CCCCCHHHcCCCCCCEE
Confidence 678999999999999999999999999999986 3332 23 34679999999988755
No 72
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=88.03 E-value=2.3 Score=35.66 Aligned_cols=70 Identities=13% Similarity=0.171 Sum_probs=51.5
Q ss_pred cCCCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 120 MPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 120 ~~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
.+++......|...+|+.+|...+.. .+.+...++|.--+...... ..+.++||.|++|.....|++|.+
T Consensus 14 lpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~-~~d~~~TL~e~gL~p~a~L~ve~k 83 (84)
T 3qx1_A 14 TPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVT-QLDPNKSLLEVKLFPQETLFLEAK 83 (84)
T ss_dssp CTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGG-GSCTTSBTTTTTCCSEEEEEEEEC
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCc-CCCCCCCHHHCCCCCCCEEEEEec
Confidence 57777778899999999999998877 45566677776322222211 236789999999998888888854
No 73
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=87.97 E-value=1.7 Score=35.39 Aligned_cols=60 Identities=17% Similarity=0.322 Sum_probs=47.8
Q ss_pred CCCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeE
Q 040385 121 PRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDI 186 (827)
Q Consensus 121 ~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~i 186 (827)
.+.....+.+.+..++..|+++.|+..+++++.+|++ |.+. .+ ..+.|+.++++.++..|
T Consensus 9 ~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~-fdG~----~l-~~~~Tp~~l~medgD~I 68 (72)
T 1wm3_A 9 QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR-FDGQ----PI-NETDTPAQLEMEDEDTI 68 (72)
T ss_dssp TTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEE-ETTE----EC-CTTCCTTTTTCCTTEEE
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEE-ECCE----Ec-CCCCCHHHcCCCCCCEE
Confidence 3455678999999999999999999999999999986 3332 23 34679999999887654
No 74
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=87.96 E-value=0.77 Score=39.69 Aligned_cols=60 Identities=20% Similarity=0.232 Sum_probs=46.8
Q ss_pred CCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEE
Q 040385 123 GECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVE 189 (827)
Q Consensus 123 ~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E 189 (827)
.....+.++..+||.+|++++....+++++..||. |. ...| + +.+|.++++..+..|.+-
T Consensus 26 g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~-~~----Gk~L-d-d~tL~~~~i~~g~~i~lv 85 (95)
T 1v86_A 26 KTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVM-YK----GLVP-E-DKTLREIKVTSGAKIMVV 85 (95)
T ss_dssp TEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCB-SS----SBCC-S-SSBHHHHCCCTTEEEEEC
T ss_pred CEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE-EC----CeeC-C-cCcHHHCCCCCCCEEEEE
Confidence 44567889999999999999999999999888876 32 2345 3 349999999888766553
No 75
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=87.77 E-value=2.4 Score=36.34 Aligned_cols=63 Identities=22% Similarity=0.246 Sum_probs=50.3
Q ss_pred CCeeEEEecccccHHHHHHHHHHH---hCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 123 GECSTIRISKKETIGELHRRACSI---FYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 123 ~~~~~~~~Sk~~ti~~l~~~~~~~---f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
.....+.++..+||.+|++++... -+++++..||. |. +..|.+ +.+|.++++..+..|.+.++
T Consensus 10 g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi-~~----Gk~L~D-~~tL~~ygI~~g~~i~l~~~ 75 (95)
T 1uel_A 10 QQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLI-YA----GKILND-DTALKEYKIDEKNFVVVMVT 75 (95)
T ss_dssp CCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEE-ET----TEECCT-TSBGGGGTCCSSSEEEEEES
T ss_pred CCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEE-EC----CEECCC-cCcHHHCCCCCCCEEEEEEe
Confidence 445678889999999999999999 57999998885 32 335644 68999999999998887765
No 76
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=87.69 E-value=2 Score=38.66 Aligned_cols=62 Identities=15% Similarity=0.154 Sum_probs=50.6
Q ss_pred CeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCC-------CCeEEEEEE
Q 040385 124 ECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQM-------DQDILVEVL 191 (827)
Q Consensus 124 ~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~-------~q~il~E~~ 191 (827)
....+.+...+||.+|++++....+++++.-||+ |.+ .+|+| ++||.+++++. +..|-+-++
T Consensus 12 tTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI-~~G----k~LeD-~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 12 TTIFTDAKESSTVFELKRIVEGILKRPPDEQRLY-KDD----QLLDD-GKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp EEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEE-ETT----EECCT-TSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred EEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEE-eCC----eECCC-cCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 3456678889999999999999999999999998 332 45655 78999999998 777777777
No 77
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=87.66 E-value=2 Score=38.39 Aligned_cols=64 Identities=20% Similarity=0.253 Sum_probs=52.2
Q ss_pred CCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEEe
Q 040385 123 GECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLD 192 (827)
Q Consensus 123 ~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~~ 192 (827)
.....+.++..+||.+|++++....+++++..||. |. +..|.+ +++|.++++..+..|.+-.+.
T Consensus 19 G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~----Gk~L~D-~~tL~~ygI~~gstI~l~~~~ 82 (114)
T 2kdi_A 19 GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI-WA----GKQLED-GRTLSDYNIQRESTLHLVLRL 82 (114)
T ss_dssp CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE-ET----TEECCT-TCBTTTTTCCSSCEEEEEECC
T ss_pred CcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE-EC----CEECCC-CCcHHHCCCCCCCEEEEEEEc
Confidence 45567888999999999999999999999999985 32 234544 689999999999988887773
No 78
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=87.63 E-value=1.2 Score=39.26 Aligned_cols=63 Identities=14% Similarity=0.155 Sum_probs=51.2
Q ss_pred CCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 123 GECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 123 ~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
.....+.++..+||.+|++++....+++.+..||. |. +..|.+ +++|.++++..+..|.+-.+
T Consensus 33 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~----Gk~L~D-~~tL~~ygI~~g~ti~lv~~ 95 (106)
T 1ttn_A 33 GKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWF-FS----GRPLTD-KMKFEELKIPKDYVVQVIVS 95 (106)
T ss_dssp TEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEE-ET----TEECCT-TSHHHHCCCSSSCEEEEECC
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEE-EC----CEECCC-CCcHHHcCCCCCCEEEEEEe
Confidence 44567889999999999999999999999988986 32 234544 68999999999988877655
No 79
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=86.85 E-value=0.65 Score=39.29 Aligned_cols=62 Identities=26% Similarity=0.322 Sum_probs=46.1
Q ss_pred eEEE-ecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccc-cccccccccccccCCCCeEEEE
Q 040385 126 STIR-ISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHAL-MNDMDRTLDDANIQMDQDILVE 189 (827)
Q Consensus 126 ~~~~-~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~l-l~~~~~tl~d~~l~~~q~il~E 189 (827)
..+. +...+|+.+|+..+.+..+++++..||- ++.....+ +.+.+++|.+++|..+..|.+.
T Consensus 12 ~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~--~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~ 75 (86)
T 2kzr_A 12 HLLQGLSSRTRLRELQGQIAAITGIAPGSQRIL--VGYPPECLDLSDRDITLGDLPIQSGDMLIVE 75 (86)
T ss_dssp EEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCE--ESSCCCCCCCCCSSCBTTTSSCCTTCEEECC
T ss_pred EEeeecCCCCCHHHHHHHHHHHhCCCccceEEE--eCCCCcccccCCCCCCHHHcCCCCCCEEEEE
Confidence 3456 7888999999999999999998877774 22211112 2336789999999998888776
No 80
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=86.42 E-value=1.2 Score=38.60 Aligned_cols=60 Identities=10% Similarity=0.112 Sum_probs=47.0
Q ss_pred CCee-EEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEE
Q 040385 123 GECS-TIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVE 189 (827)
Q Consensus 123 ~~~~-~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E 189 (827)
.... .+.+...+|+.+|++++....++++++-||. | ++..|.+ + +|.++++..+..|.+-
T Consensus 16 g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi-~----~Gk~L~D-~-tL~~~~I~~g~~i~l~ 76 (96)
T 1wgg_A 16 KEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVM-V----KGGTLKD-D-DWGNIKMKNGMTVLMM 76 (96)
T ss_dssp TEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCE-E----TTEECCS-S-CCCSCCCCSSCEEECC
T ss_pred CEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE-E----CCcCCCC-C-CHHHCCCCCCCEEEEE
Confidence 3445 4788889999999999999999999888876 3 2335655 4 9999999988877653
No 81
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=86.37 E-value=1.8 Score=38.26 Aligned_cols=68 Identities=15% Similarity=0.184 Sum_probs=52.0
Q ss_pred eEEEEEEcCCCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEE
Q 040385 113 LRLQLLVMPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILV 188 (827)
Q Consensus 113 ~~l~~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~ 188 (827)
+.|++. .+.....+.+.+..++..|+++.|+..+++.+.+|++ |.+. .+ ..+.|+.++++..+..|-+
T Consensus 32 I~IkV~--~~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~-FdG~----rl-~~~~Tp~dl~medgD~Idv 99 (106)
T 2eke_C 32 INLKVS--DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFL-YDGI----RI-QADQTPEDLDMEDNDIIEA 99 (106)
T ss_dssp EEEEEE--CSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE-ETTE----EC-CTTCCTTTTTCCTTEEEEE
T ss_pred EEEEEe--cCCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEE-ECCe----Ec-CCCCCHHHcCCCCCCEEEE
Confidence 344443 2556778999999999999999999999999999987 3332 23 3467999999998875543
No 82
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=86.22 E-value=2.7 Score=36.15 Aligned_cols=61 Identities=18% Similarity=0.314 Sum_probs=48.5
Q ss_pred CCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEE
Q 040385 122 RGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILV 188 (827)
Q Consensus 122 ~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~ 188 (827)
+.....+.+.+..++..|++..|+..+++++.+|++ |.+. .| ..+.|+.++++..+..|-+
T Consensus 26 ~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~-fdG~----~l-~~~~Tp~dl~medgD~Idv 86 (93)
T 2d07_B 26 DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR-FDGQ----PI-NETDTPAQLEMEDEDTIDV 86 (93)
T ss_dssp TSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEE-ETTE----EC-CTTCCTTTTTCCTTEEEEE
T ss_pred CCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEE-ECCE----Ec-CCCCCHHHcCCCCCCEEEE
Confidence 445678999999999999999999999999999976 3332 23 3467999999998875543
No 83
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=85.66 E-value=2.5 Score=37.23 Aligned_cols=69 Identities=17% Similarity=0.304 Sum_probs=51.6
Q ss_pred eEEEEEEcCCCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEE
Q 040385 113 LRLQLLVMPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILV 188 (827)
Q Consensus 113 ~~l~~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~ 188 (827)
+.|+|. ..+.....+.+.+..++..|++..|+..+++++.+|++ |.+. .| ..+.|+.++++..+..|-+
T Consensus 25 I~IkVk-~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~-FdG~----~l-~~~~Tp~dl~medgD~Idv 93 (104)
T 1wz0_A 25 INLKVA-GQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR-FDGQ----PI-NETDTPAQLEMEDEDTIDV 93 (104)
T ss_dssp EEEEEE-CSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEE-SSSS----BC-CTTSCTTTTTCCTTEEEEE
T ss_pred EEEEEE-CCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEE-ECCE----Ec-CCCCCHHHcCCCCCCEEEE
Confidence 344443 23455678999999999999999999999999999886 4333 23 3467999999998875543
No 84
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=85.53 E-value=2.7 Score=37.63 Aligned_cols=70 Identities=11% Similarity=0.200 Sum_probs=52.5
Q ss_pred eEEEEEEc-CCCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEE
Q 040385 113 LRLQLLVM-PRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILV 188 (827)
Q Consensus 113 ~~l~~~~~-~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~ 188 (827)
..+.|... .+.....+.+.+..++..|++..|+..+++.+.+|++ |.+. .+ ..+.|+.++++.++..|-+
T Consensus 39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFl-FDG~----rI-~~~~TP~dL~MEDgD~IdV 109 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFL-FEGQ----RI-ADNHTPKELGMEEEDVIEV 109 (115)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEE-ETTE----EC-CTTCCTTTTTCCTTCEEEE
T ss_pred CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEE-ECCe----EC-CCCCCHHHcCCCCCCEEEE
Confidence 34444443 3455678999999999999999999999999999987 3332 23 3368999999998876543
No 85
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=84.87 E-value=1.4 Score=38.90 Aligned_cols=65 Identities=15% Similarity=0.191 Sum_probs=49.3
Q ss_pred CCCeeEEEecccccHHHHHHHHHHHhCCCCc---------------cEEEEEeeCCccccccccccccccccccCCCCeE
Q 040385 122 RGECSTIRISKKETIGELHRRACSIFYLNLE---------------QICIWDYYGHRKHALMNDMDRTLDDANIQMDQDI 186 (827)
Q Consensus 122 ~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~---------------~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~i 186 (827)
+.....+.+...+||.+|++++...+++++. ..||. |.+ ..|.+.++||.+++|..+..|
T Consensus 16 ~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li-~~G----k~L~dD~~tL~dygI~~g~~l 90 (105)
T 1v2y_A 16 DGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLT-SAG----EKLTEDRKKLRDYGIRNRDEV 90 (105)
T ss_dssp SSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEE-SSS----CEECCSSSBHHHHTCCSSEEE
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEE-eCC----cCccCCcCCHHHcCCCCCCEE
Confidence 3455678888899999999999999998752 35664 332 346556789999999999877
Q ss_pred EEEEE
Q 040385 187 LVEVL 191 (827)
Q Consensus 187 l~E~~ 191 (827)
.+-.+
T Consensus 91 ~lv~~ 95 (105)
T 1v2y_A 91 SFIKK 95 (105)
T ss_dssp EEEEC
T ss_pred EEEeh
Confidence 66655
No 86
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=84.55 E-value=3.2 Score=39.75 Aligned_cols=64 Identities=20% Similarity=0.269 Sum_probs=52.1
Q ss_pred CCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 122 RGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 122 ~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
......+.++..+||.+|++++....+++++.-||. |. +..|.+ +.+|.++++..+..|.+-++
T Consensus 29 ~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~-~~----g~~L~d-~~tL~~~~i~~~~~l~l~~~ 92 (172)
T 3u30_A 29 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FA----GKQLED-GRTLSDYNIQKESTLHLVLR 92 (172)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ET----TEECCT-TCBTGGGTCCTTCEEEEEEC
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE-EC----Cccccc-cCCHhHcCCcccceeeeeec
Confidence 345567889999999999999999999999988886 32 234544 78999999999988877766
No 87
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=84.12 E-value=1 Score=39.76 Aligned_cols=66 Identities=6% Similarity=0.066 Sum_probs=48.6
Q ss_pred eeEEEec-ccccHHHHHHHHHHHhCCCCccEEEEEeeCCc-----ccc--cc---ccccccccccccCCCCeEEEEEE
Q 040385 125 CSTIRIS-KKETIGELHRRACSIFYLNLEQICIWDYYGHR-----KHA--LM---NDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 125 ~~~~~~S-k~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~-----~~~--ll---~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
...+.+. ..+||.+|++++...++++++.-||. +.+.. ... .+ .+.+++|.+++|..+..|.+...
T Consensus 18 ~~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~-~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G~~L~l~~~ 94 (107)
T 1wf9_A 18 LERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLS-TNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSMVYLAYE 94 (107)
T ss_dssp EEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCB-SSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCEEECCCS
T ss_pred CEEEEECCCCCcHHHHHHHHHHHhCcCcccCEEE-ECCccccccCccccccccccCCCCCCHHHCCCCCCCEEEEEeC
Confidence 3467788 89999999999999999998887775 22220 110 22 35678999999999988877644
No 88
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=83.49 E-value=4.4 Score=38.16 Aligned_cols=64 Identities=11% Similarity=0.216 Sum_probs=52.7
Q ss_pred CCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 122 RGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 122 ~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
......+.++..+|+.+|++++....+++++..||. |. +..|.+ +.+|.++++..+..|.+-++
T Consensus 90 ~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~-~~----G~~L~d-~~tL~~y~i~~g~~l~l~~r 153 (159)
T 3rt3_B 90 KGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT-FE----GKPLED-QLPLGEYGLKPLSTVFMNLR 153 (159)
T ss_dssp TSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEE-ET----TEECCT-TSBGGGGTCCTTCEEEEEEC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEE-EC----CeecCC-CCCHHHcCCCCCCEEEEEEe
Confidence 345677899999999999999999999999998885 32 245655 68999999999998877766
No 89
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=83.40 E-value=5.3 Score=34.66 Aligned_cols=59 Identities=17% Similarity=0.218 Sum_probs=45.6
Q ss_pred EEEecccccHHHHHHHH-HHHhCCCCccEEEEEeeCCcccccccccccccccccc-CCCCeEEEEEE
Q 040385 127 TIRISKKETIGELHRRA-CSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANI-QMDQDILVEVL 191 (827)
Q Consensus 127 ~~~~Sk~~ti~~l~~~~-~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l-~~~q~il~E~~ 191 (827)
.+.++..+||.+|++++ ....++++++.||. | .+..|.+ +.+|.++++ ..+..|.+=+.
T Consensus 35 ~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi-~----~Gk~L~D-~~tL~dy~I~~~g~ti~lmvs 95 (98)
T 4a20_A 35 EHDFSPSDTILQIKQHLISEEKASHISEIKLL-L----KGKVLHD-NLFLSDLKVTPANSTITVMIK 95 (98)
T ss_dssp EEEECTTCBHHHHHHHHHHTTSCSCGGGEEEE-E----TTEEECT-TCBGGGSCCBTTBCEEEEEEC
T ss_pred EEecCCCChHHHHHHHHHHHhcCCChhhEEEE-E----CCEECcC-cCCHHHcCcCCCCCEEEEEEe
Confidence 34667999999999999 66779999999986 3 2345655 689999999 88887766543
No 90
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=83.35 E-value=1.5 Score=37.42 Aligned_cols=62 Identities=13% Similarity=0.154 Sum_probs=46.4
Q ss_pred CeeEE-EecccccHHHHHHHHHHHhCCCCccEEEEEe-eCCccccccccccccccccccCCCCeEEEE
Q 040385 124 ECSTI-RISKKETIGELHRRACSIFYLNLEQICIWDY-YGHRKHALMNDMDRTLDDANIQMDQDILVE 189 (827)
Q Consensus 124 ~~~~~-~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~-~~~~~~~ll~~~~~tl~d~~l~~~q~il~E 189 (827)
....+ .+...+|+.+|++++....++++++-||... + ++..|.+ +.+|.++++..+..|.+-
T Consensus 17 ~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~---~Gk~L~D-~~~L~~~~i~~g~~l~l~ 80 (90)
T 1v5t_A 17 QEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKV---KGKPAEN-DVKLGALKLKPNTKIMMM 80 (90)
T ss_dssp EEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEE---TTEECCT-TSBHHHHTCCTTEEEEEE
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeecc---CCcCcCC-CCCHHHcCCCCCCEEEEE
Confidence 33456 6778899999999999999999988887521 1 2234544 678999999988776653
No 91
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=82.47 E-value=0.72 Score=38.61 Aligned_cols=65 Identities=11% Similarity=0.176 Sum_probs=45.7
Q ss_pred CeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEE
Q 040385 124 ECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVE 189 (827)
Q Consensus 124 ~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E 189 (827)
....+.++..+|+.+|++++.+.++++.+...+..-+. .+..+....+.+|.+++|..|..|+++
T Consensus 14 G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~-p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 14 GVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRN-KTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCC-GGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CCEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCC-CCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 34566688899999999999999999866544321111 123332346789999999999888775
No 92
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=82.27 E-value=3.1 Score=37.03 Aligned_cols=68 Identities=15% Similarity=0.250 Sum_probs=51.3
Q ss_pred eEEEEEEcCCCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEE
Q 040385 113 LRLQLLVMPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDIL 187 (827)
Q Consensus 113 ~~l~~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il 187 (827)
+.|++.. .+.....+.+.+..++..|+++.|+..+++++.+|+. |.+. .| ..+.|+.++++.++..|-
T Consensus 27 I~IkVk~-~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfi-FdG~----~L-~~~~Tp~dl~mEDgD~Id 94 (110)
T 2k8h_A 27 VAVKVVN-ADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFL-FDGT----PI-DETKTPEELGMEDDDVID 94 (110)
T ss_dssp EEEEEEE-TTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEE-SSSC----BC-CSSSHHHHHHCSSEEEEE
T ss_pred EEEEEEC-CCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEE-ECCE----Ec-CCCCCHHHcCCCCCCEEE
Confidence 4444432 3445678999999999999999999999999999976 4333 23 346799999998876543
No 93
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=81.86 E-value=5 Score=38.48 Aligned_cols=64 Identities=20% Similarity=0.280 Sum_probs=52.2
Q ss_pred CCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 122 RGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 122 ~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
......+.+...+|+.+|++++....++++++.||. |. +..|.+ +++|.++++..+..|.+-++
T Consensus 9 ~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~----Gk~L~D-~~tL~~y~I~~gstI~Lvlr 72 (169)
T 3l0w_B 9 TGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI-FA----GKQLED-GRTLSDYNIQKESTLHLVLR 72 (169)
T ss_dssp TSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEE-ET----TEECCT-TSBGGGGTCCTTCEEEEEEC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEE-EC----CccccC-cCcHHHcCCCCCCEEEEEEE
Confidence 344567888999999999999999999999988876 32 234654 78999999999998877776
No 94
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=81.85 E-value=5.1 Score=37.65 Aligned_cols=65 Identities=14% Similarity=0.096 Sum_probs=52.5
Q ss_pred CCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEe-eCCccccccccccccccccccCCCCeEEEEEE
Q 040385 122 RGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDY-YGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 122 ~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~-~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
......+.++..+||.+|++++...++++++.-||.-| .+ ..| +.+.+|.++++..+..|.+-++
T Consensus 11 ~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g----~~L-~d~~tL~~y~i~~~~~l~l~~~ 76 (159)
T 3rt3_B 11 AGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSG----VAL-QDRVPLASQGLGPGSTVLLVVD 76 (159)
T ss_dssp TSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTC----CBC-CTTSCGGGGTCCTTCEEEEEEC
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCC----CCC-CCCCCHHHcCCCCCCEEEEEcc
Confidence 34456788999999999999999999999998888644 23 235 4478999999999988877666
No 95
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=81.15 E-value=5.8 Score=36.70 Aligned_cols=64 Identities=20% Similarity=0.269 Sum_probs=51.8
Q ss_pred CCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 122 RGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 122 ~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
+.....+.++..+|+.+|++++++..+++++..||. |. +..|.+ +.+|.++++..+..|.+-++
T Consensus 85 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~-~~----g~~L~d-~~tL~~~~i~~~~~i~l~~r 148 (152)
T 3b08_A 85 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FA----GKQLED-GRTLSDYNIQKESTLHLVLR 148 (152)
T ss_dssp SSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ET----TEECCT-TSBTGGGTCCTTCEEEEEEC
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEE-EC----CEECCC-CCCHHHcCCCCCCEEEEEEe
Confidence 345567889999999999999999999999998886 32 234544 68999999999988877665
No 96
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=80.89 E-value=4 Score=34.70 Aligned_cols=60 Identities=13% Similarity=0.159 Sum_probs=46.5
Q ss_pred eEEEecccccHHHHHHHHHHHh--CCCCccEEEEEeeCCcccccccccccccccc--ccCCCCeEEEEEE
Q 040385 126 STIRISKKETIGELHRRACSIF--YLNLEQICIWDYYGHRKHALMNDMDRTLDDA--NIQMDQDILVEVL 191 (827)
Q Consensus 126 ~~~~~Sk~~ti~~l~~~~~~~f--~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~--~l~~~q~il~E~~ 191 (827)
..+.+...+||.+|++++.... ++++++.||. |. +..|.| +.+|.++ ++..+..|.+-++
T Consensus 22 ~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi-~~----Gk~L~D-~~tL~~~~~~i~~~~~i~lv~~ 85 (93)
T 1wgd_A 22 LELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLI-YS----GKLLLD-HQCLRDLLPKQEKRHVLHLVCN 85 (93)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEE-ET----TEECCS-SSCHHHHSCSSSCSEEEEEECC
T ss_pred EEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEE-EC----CEECcC-cCCHHHHhcCCCCCCEEEEEeC
Confidence 4555668999999999999999 9999988886 32 345655 5799999 9988876665544
No 97
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=80.60 E-value=5.7 Score=36.74 Aligned_cols=63 Identities=21% Similarity=0.275 Sum_probs=50.8
Q ss_pred CCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 123 GECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 123 ~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
.....+.++..+|+.+|++++....+++++..||. |. +..|.+ +.+|.++++..+..|.+..+
T Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~-~~----g~~L~d-~~tL~~~~i~~~~~l~l~~~ 72 (152)
T 3b08_A 10 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FA----GKQLED-GRTLSDYNIQKESTLHLVLR 72 (152)
T ss_dssp SCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE-ET----TEECCT-TSBTGGGTCCTTCEEEEEEC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEE-EC----CeECcC-cccHHHhccCCCCeeEEEee
Confidence 44567888999999999999999999999988876 22 234544 78999999999988877665
No 98
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=78.75 E-value=7.7 Score=34.28 Aligned_cols=71 Identities=14% Similarity=0.201 Sum_probs=52.3
Q ss_pred cCCCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 120 MPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 120 ~~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
+++......+|...+||.+|.+.+....+.+...+.|.--+...... ..+.++||+|++|.....|+++..
T Consensus 20 lpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~-~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 20 LPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFT-REDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp CSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCC-TTTTTSBTGGGTCSSEEEEEEECC
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCc-ccccCCCHHHCCCCCceEEEEEEC
Confidence 57777788999999999999999988877666666665322222111 125789999999998877877744
No 99
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=78.60 E-value=6.8 Score=33.91 Aligned_cols=56 Identities=11% Similarity=0.153 Sum_probs=45.3
Q ss_pred eeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeE
Q 040385 125 CSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDI 186 (827)
Q Consensus 125 ~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~i 186 (827)
...+.+.+..++.-|++.-|+..+++.+.+|++ |.+. .+ ..+.|+.++++.++..|
T Consensus 38 ~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~-FDG~----rI-~~~~TP~dLdMEDgD~I 93 (97)
T 2jxx_A 38 TLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFF-FDGT----KL-SGRELPADLGMESGDLI 93 (97)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEE-ETTE----EC-CSCSCHHHHTCCTTEEE
T ss_pred EEEEEECCCChHHHHHHHHHHHHCCCcccEEEE-ECCE----Ec-CCCCCHHHcCCCCCCEE
Confidence 578999999999999999999999999999976 3332 23 44679999999887654
No 100
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=77.43 E-value=9.2 Score=40.30 Aligned_cols=81 Identities=20% Similarity=0.258 Sum_probs=57.6
Q ss_pred eeeEEEe-----ceEEEEEEcC-CCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCcccccccccccccccc
Q 040385 105 ELAVEVY-----PLRLQLLVMP-RGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDA 178 (827)
Q Consensus 105 ~~~vEly-----P~~l~~~~~~-~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~ 178 (827)
.+.+|+. +..++|.... ......+.++..+||.+|++++....++++++.||. |. ...|.+ +++|.++
T Consensus 219 ~llvE~~~A~~~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi-~~----Gk~L~D-~~TLsdy 292 (307)
T 3ai5_A 219 MVLLEFVTAAGITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FA----GKQLED-GRTLSDY 292 (307)
T ss_dssp EEEEEEEEEESSCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEE-ET----TEECCT-TSBTGGG
T ss_pred eeeeeehhccCCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE-eC----CeecCC-CCCHHHc
Confidence 3455653 2334444432 344567889999999999999999999999988885 22 234544 7899999
Q ss_pred ccCCCCeEEEEEE
Q 040385 179 NIQMDQDILVEVL 191 (827)
Q Consensus 179 ~l~~~q~il~E~~ 191 (827)
++..+..|.+-++
T Consensus 293 gI~~gstL~LvlR 305 (307)
T 3ai5_A 293 NIQKESTLHLVLR 305 (307)
T ss_dssp TCCTTCEEEEEC-
T ss_pred CCCCCCEEEEEEe
Confidence 9999887766543
No 101
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=76.55 E-value=3.9 Score=34.66 Aligned_cols=57 Identities=16% Similarity=0.208 Sum_probs=44.5
Q ss_pred EecccccHHHHHHHH-HHHhCCCCccEEEEEeeCCcccccccccccccccccc-CCCCeEEEEEE
Q 040385 129 RISKKETIGELHRRA-CSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANI-QMDQDILVEVL 191 (827)
Q Consensus 129 ~~Sk~~ti~~l~~~~-~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l-~~~q~il~E~~ 191 (827)
.++..+||.+|++++ ....++++++.||. |. +..|.| +.+|.++++ ..+..|.+-..
T Consensus 19 ~v~~~~TV~~lK~~I~~~~~gip~~~QrLi-~~----Gk~L~D-~~tL~~y~I~~~~stl~v~~~ 77 (87)
T 2lxa_A 19 DFSPSDTILQIKQHLISEEKASHISEIKLL-LK----GKVLHD-NLFLSDLKVTPANSTITVMIK 77 (87)
T ss_dssp ECCTTCBHHHHHHHHHHTTSCSSSTTEEEE-ET----TEECCT-TCBHHHHCCCGGGCEEEEEEC
T ss_pred cCCCCCcHHHHHHHHHHHhcCCChHHEEEE-EC----CEECcC-cCCHHHcCCCCCCCEEEEEcC
Confidence 355899999999999 88889999999987 33 345655 679999999 57777665544
No 102
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=76.53 E-value=5.4 Score=39.33 Aligned_cols=71 Identities=14% Similarity=0.156 Sum_probs=54.7
Q ss_pred eEEEEEEcCCCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 113 LRLQLLVMPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 113 ~~l~~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
+.|++. .+.....+.+.+..++..|++..|+..+++.+.+|++ |.++ .+ ..+.|+.++++.++..|-+=.+
T Consensus 30 I~LkV~--~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~-FdG~----rI-~~~~TP~dL~MEdgD~Idv~~~ 100 (200)
T 3pge_A 30 INLKVS--DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFL-YDGI----RI-QADQTPEDLDMEDNDIIEAHRE 100 (200)
T ss_dssp EEEEEE--CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEE-ETTE----EC-CTTCCTTTTTCCTTEEEEEEEC
T ss_pred EEEEEe--cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEE-ECCE----Ec-CCCCCHHHcCCCCCCEEEEEec
Confidence 455563 3566789999999999999999999999999999987 3332 23 3367999999998876654444
No 103
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.40 E-value=6.4 Score=34.28 Aligned_cols=64 Identities=8% Similarity=0.133 Sum_probs=46.6
Q ss_pred CCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 123 GECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 123 ~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
.....+.+...+|+.+|+.++....+|+++.-||- ++.. .. +. .+.+|.+++|..+..|.+-..
T Consensus 18 Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi-~~~~--gk-L~-D~~tLs~~~I~~gstL~lvl~ 81 (100)
T 2dzm_A 18 DRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLK-GWKT--GD-VE-DSTVLKSLHLPKNNSLYVLTP 81 (100)
T ss_dssp SCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEE-CCSS--SC-CC-TTSBHHHHCCCSEEEEEECCS
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEE-ccCC--CC-CC-CcCCHHHcCCCCCCEEEEEec
Confidence 33456677788999999999999999999877762 2211 11 43 367999999999877766444
No 104
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=76.13 E-value=11 Score=33.15 Aligned_cols=71 Identities=20% Similarity=0.146 Sum_probs=51.9
Q ss_pred EcCCCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEEe
Q 040385 119 VMPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVLD 192 (827)
Q Consensus 119 ~~~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~~ 192 (827)
++++......+|...+||.+|...+... +.....++|.--+... .+-.+.++||++++|.....|+||..+
T Consensus 29 RlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk--~l~~d~~~TL~e~gL~p~a~L~Ve~~~ 99 (109)
T 2cr5_A 29 RCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRR--ALEVEGGSSLEDIGITVDTVLNVEEKE 99 (109)
T ss_dssp ECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCC--BCCCCSSCBHHHHTCSSCEEEEEEECC
T ss_pred ECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCc--CCCCCCCCCHHHcCCCCCeEEEEEeCC
Confidence 3577777888999999999999988754 3444567765433222 232367899999999998889998774
No 105
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=75.41 E-value=5.4 Score=34.00 Aligned_cols=61 Identities=21% Similarity=0.172 Sum_probs=45.7
Q ss_pred CCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 123 GECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 123 ~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
.....+.+...+||.+|++++.... .+..||. |. +..|.+.+++|.++++..+..|.+-.+
T Consensus 17 g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi-~~----Gk~L~D~~~tL~~y~i~~g~~i~l~~~ 77 (95)
T 1wia_A 17 DTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLI-YQ----GRLLQDPARTLSSLNITNNCVIHCHRS 77 (95)
T ss_dssp TEEEEEEECSSSBHHHHHHHHSSST---TTTCEEE-ET----TEECCCSSCBTTTTTCCTTEEEEEECC
T ss_pred CCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEE-EC----CEEccCCcCCHHHcCCCCCCEEEEEEC
Confidence 3445778889999999999998876 5667774 32 345666558999999999887766544
No 106
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=75.18 E-value=9.2 Score=36.47 Aligned_cols=64 Identities=20% Similarity=0.269 Sum_probs=50.4
Q ss_pred CCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 122 RGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 122 ~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
......+.++..+||.+|++++....+++++..||. |. +..|.+ +.+|.++++..+..|.+-++
T Consensus 105 ~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~-~~----g~~L~D-~~tL~~y~i~~g~tl~l~~r 168 (172)
T 3u30_A 105 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FA----GKQLED-GRTLSDYNIQKESTLHLVLR 168 (172)
T ss_dssp SCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEE-ET----TEECCT-TSBSGGGTCCTTCEEEECC-
T ss_pred cCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEE-EC----CccCCC-CCcHHHhCCCCCCEEEEEEe
Confidence 345567889999999999999999999999888875 32 234554 78999999999987765443
No 107
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=74.85 E-value=14 Score=30.46 Aligned_cols=61 Identities=15% Similarity=0.340 Sum_probs=47.3
Q ss_pred cCCCCeeEEEecccccHHHHHHHHHHHhCCCCc-cEEEEEeeCCccccccccccccccccccCCCCeE
Q 040385 120 MPRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTLDDANIQMDQDI 186 (827)
Q Consensus 120 ~~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~-~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~i 186 (827)
.++.....+.+-...++.+|++.-|+..+|+.+ .+|+- |.+. -| +++.+++|+.+.++..|
T Consensus 16 ~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~Irll-FDGd----RL-dp~~tp~DlemeD~D~I 77 (82)
T 3goe_A 16 SSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLE-FEGE----WL-DPNDQVQSTELEDEDQV 77 (82)
T ss_dssp ESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEE-ETTE----EC-CTTSBGGGSSCCTTCEE
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEE-EcCc----cc-CccCChhhhCCcCCcee
Confidence 455556788899999999999999999999987 88863 3322 23 45789999999887644
No 108
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=74.74 E-value=5.4 Score=38.87 Aligned_cols=67 Identities=15% Similarity=0.195 Sum_probs=52.2
Q ss_pred eEEEEEEcCCCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEE
Q 040385 113 LRLQLLVMPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDIL 187 (827)
Q Consensus 113 ~~l~~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il 187 (827)
+.|+| ..+.....+.|.+..++..|++..|+..+++...+|++ |.+. .+ ..+.|+.++++.++..|-
T Consensus 58 InLKV--k~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFL-FDGq----RI-~~ddTPeDLdMEDGDtID 124 (207)
T 3tix_A 58 INLKV--SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFL-YDGI----EI-QADQTPEDLDMEDNDIIE 124 (207)
T ss_dssp EEEEE--ECSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEE-ETTE----EC-CSSCCTTTTTCCTTEEEE
T ss_pred EEEEE--ecCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEE-ECCe----ec-CCCCCHHHcCCCCCCEEE
Confidence 45555 34667789999999999999999999999999999986 3332 23 347899999999887553
No 109
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=74.57 E-value=5 Score=35.26 Aligned_cols=53 Identities=23% Similarity=0.159 Sum_probs=42.5
Q ss_pred cccHHHHHHHHHHHh--CCCCcc-EEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 133 KETIGELHRRACSIF--YLNLEQ-ICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 133 ~~ti~~l~~~~~~~f--~i~~~~-~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
.+||.+|++++.... +++++. .||. |. +..|.+ +++|.++++..+..|.+-.+
T Consensus 44 ~~TV~~LK~~i~~~~~~gip~~~~qrLi-~~----Gk~L~D-~~tL~~y~i~~g~~i~lv~~ 99 (107)
T 1x1m_A 44 GYSISFLKQLIAGKLQESVPDPELIDLI-YC----GRKLKD-DQTLDFYGIQPGSTVHVLRK 99 (107)
T ss_dssp CCBHHHHHHHHHHHCTTTCCCSSSEEEE-ET----TEECCT-TCBHHHHTCCTTCEEEEEES
T ss_pred cCCHHHHHHHHHHHhccCCChhhcEEEE-EC----CeECCC-CCcHHHcCCCCCCEEEEEeC
Confidence 499999999999999 999998 8985 32 234544 68999999999987766544
No 110
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=71.04 E-value=4.6 Score=37.03 Aligned_cols=37 Identities=14% Similarity=0.347 Sum_probs=33.0
Q ss_pred eEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCC
Q 040385 126 STIRISKKETIGELHRRACSIFYLNLEQICIWDYYGH 162 (827)
Q Consensus 126 ~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~ 162 (827)
.++.+-|..++.+|++.+.+.||++.+.+|||.....
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~~~R 94 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQAR 94 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEECCCC
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEeecC
Confidence 5678889999999999999999999999999976543
No 111
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=70.34 E-value=16 Score=33.12 Aligned_cols=69 Identities=20% Similarity=0.265 Sum_probs=51.6
Q ss_pred cCCCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCcccccc-ccccccccccccCCCCeEEEEEE
Q 040385 120 MPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALM-NDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 120 ~~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll-~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
+++......+|...+||.+|...+... +.....+.|.--+... .+. .+.++||.|++|.....+++|..
T Consensus 50 lPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk--~l~~~d~~~TL~e~gL~psa~Liv~~~ 119 (124)
T 1wj4_A 50 YPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRR--KLSHLDYDITLQEAGLCPQETVFVQES 119 (124)
T ss_dssp CTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCC--EETSSCSSSCTTTTTCCSSBCCEEEEC
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCc--CCccCCCCCCHHHCCCCCceEEEEEEc
Confidence 577777888999999999999998765 6666677776432222 222 46789999999998888888865
No 112
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=72.33 E-value=0.97 Score=36.84 Aligned_cols=61 Identities=7% Similarity=0.101 Sum_probs=46.4
Q ss_pred eeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 125 CSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 125 ~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
...+.++..+|+.+|++++.+..+++++..||. |. +..|.+ +.+|.++++..+..|.+-++
T Consensus 12 ~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~-~~----gk~L~d-~~tL~~~~i~~g~~i~l~~r 72 (76)
T 3b1l_X 12 GFPVEVDSDTSILQLKEVVAKQQGVPADQLRVI-FA----GKELPN-HLTVQNCDLEQQSIVHIVQR 72 (76)
Confidence 345677888999999999999999999888874 32 234544 68999999988876655443
No 113
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=67.43 E-value=4.1 Score=34.07 Aligned_cols=67 Identities=12% Similarity=0.073 Sum_probs=48.5
Q ss_pred CCCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEE
Q 040385 121 PRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILV 188 (827)
Q Consensus 121 ~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~ 188 (827)
.......+++|..-|++.|++.+.+.|+++.....-|...-.++..+|.. +.+|.|.++..|..|.+
T Consensus 14 y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~-~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 14 YNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSG-ECKLSDCGITNGDRLEI 80 (81)
T ss_dssp TTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEET-TSBTGGGTCCTTCEEEE
T ss_pred cCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcC-CCEEeeCCcCCCCEEEE
Confidence 45667889999999999999999999999853221012223455555644 67899999999876654
No 114
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=66.59 E-value=1.2 Score=40.75 Aligned_cols=62 Identities=21% Similarity=0.297 Sum_probs=0.0
Q ss_pred CeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 124 ECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 124 ~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
....+.++..+||.+|++++....+++++..||. |.+ ..|.| +.+|.++++..+..|.+-++
T Consensus 11 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~G----k~L~D-~~tL~~~~I~~gsti~l~~r 72 (128)
T 3u5e_m 11 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI-FAG----KQLED-GRTLSDYNIQKESTLHLVLR 72 (128)
T ss_dssp --------------------------------------------------------------------
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEE-ECC----EECCC-CCchhhhccCCCCEEEEEEE
Confidence 3456778889999999999999999999888876 322 34544 78999999999987776666
No 115
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=66.01 E-value=22 Score=32.24 Aligned_cols=63 Identities=10% Similarity=0.271 Sum_probs=45.9
Q ss_pred CCeeEEEecccccHHHHHHHHHHHh------CCC--CccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 123 GECSTIRISKKETIGELHRRACSIF------YLN--LEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 123 ~~~~~~~~Sk~~ti~~l~~~~~~~f------~i~--~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
.....+.++..+||.+|++++...+ +++ ++..||. |.+ ..|.| ++||.++++..+..+.+.+-
T Consensus 27 G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLI-y~G----K~LeD-~~TL~~y~I~~~~~~tlhlv 97 (125)
T 2gow_A 27 GKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLI-YQG----RFLHG-NVTLGALKLPFGKTTVMHLV 97 (125)
T ss_dssp SCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEE-SSS----SEEES-SCBTGGGCCCTTSEEEEEEE
T ss_pred CCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEE-ECC----cCCCC-CCcHHHcCCCCCCceEEEEE
Confidence 4667889999999999999999843 553 6778874 333 35654 68999999987765544443
No 116
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=64.17 E-value=16 Score=31.60 Aligned_cols=56 Identities=18% Similarity=0.178 Sum_probs=41.5
Q ss_pred eeEEEecccccHHHHHHHHHHHh-CCC-CccEEEEEeeCCcccccccccccccccc--ccCCCCeE
Q 040385 125 CSTIRISKKETIGELHRRACSIF-YLN-LEQICIWDYYGHRKHALMNDMDRTLDDA--NIQMDQDI 186 (827)
Q Consensus 125 ~~~~~~Sk~~ti~~l~~~~~~~f-~i~-~~~~RlW~~~~~~~~~ll~~~~~tl~d~--~l~~~q~i 186 (827)
..++.+...+||.+|++++...+ +++ +++-||. |. +..|.| +++|.++ ++..+..|
T Consensus 37 ~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLI-y~----Gk~L~D-~~tL~~y~~~I~~~~ti 96 (99)
T 2kdb_A 37 DQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLV-YS----GRLLPD-HLQLKDILRKQDEYHMV 96 (99)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEE-ET----TEEECT-TSBTHHHHTTTCSEEEE
T ss_pred EEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEE-EC----CEECCC-CCCHHHHhcCCCCCCEE
Confidence 35777799999999999999876 555 4777874 32 345654 6799999 88876554
No 117
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=63.06 E-value=31 Score=30.78 Aligned_cols=63 Identities=8% Similarity=0.245 Sum_probs=45.6
Q ss_pred CCeeEEEecccccHHHHHHHHHHHh------CC--CCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 123 GECSTIRISKKETIGELHRRACSIF------YL--NLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 123 ~~~~~~~~Sk~~ti~~l~~~~~~~f------~i--~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
.....+.+...+||.+|++++...+ ++ +++..||- |. +..|.| ++||.++++..+..+.+.+.
T Consensus 26 G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLI-y~----GK~LeD-~~TL~~y~I~~~~~~tlhLv 96 (116)
T 1wgh_A 26 GKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLI-YQ----GRFLHG-NVTLGALKLPFGKTTVMHLV 96 (116)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEE-ET----TEEECS-SCBTTTTTCCSSCEEEEEEE
T ss_pred CCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEE-EC----CcCCCC-CCcHHHcCCCCCCceEEEEE
Confidence 3667889999999999999999843 43 47788874 32 335655 68999999987665444443
No 118
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=62.93 E-value=27 Score=29.25 Aligned_cols=62 Identities=3% Similarity=-0.176 Sum_probs=41.2
Q ss_pred EEEEEecCCCcHHHHHHHHHhhcCCCCCCcEEEEEEeCCceE-EeccCcccccc--ccCCCCcEEE
Q 040385 430 TYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQ-RFLDDPLISLS--TIKDDDHLAA 492 (827)
Q Consensus 430 ~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~-~~~~d~~~~l~--~i~~~d~i~~ 492 (827)
..+++++...++.+|++.+...+|++++.+-++..-....+. +.++| ...|. .|.++..|.+
T Consensus 16 ~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d-~~tL~~Y~i~~g~~ihl 80 (86)
T 4b6w_A 16 VPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMAN-DKQLGYYQCRDEFVIHV 80 (86)
T ss_dssp EEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCT-TSBGGGGTCCTTCEEEE
T ss_pred EEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCC-CCCHHHCCCCCCCEEEE
Confidence 357899999999999999999999987666555443333343 33333 34443 4556665543
No 119
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.22 E-value=8.1 Score=32.64 Aligned_cols=58 Identities=10% Similarity=0.118 Sum_probs=43.5
Q ss_pred EE-EecccccHHHHHHHHHHH-hCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEE
Q 040385 127 TI-RISKKETIGELHRRACSI-FYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILV 188 (827)
Q Consensus 127 ~~-~~Sk~~ti~~l~~~~~~~-f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~ 188 (827)
.+ .+...+||.+|++++.+. -+++++.-||- +. .++..|.+ ++||.++++..+..|++
T Consensus 26 ~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~-~~--~~Gk~L~D-~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 26 FLDKVEPHATIAEIKNLFTKTHPQWYPARQSLR-LD--PKGKSLKD-EDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEE-SS--TTSCCCCT-TCBTTTSSCCSEEEEEE
T ss_pred EEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEE-ec--CCCcCcCC-CCCHHHcCCCCCCEEEE
Confidence 56 789999999999999996 68988877763 21 12335644 68999999988776554
No 120
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=61.43 E-value=1.7 Score=41.09 Aligned_cols=61 Identities=21% Similarity=0.296 Sum_probs=0.0
Q ss_pred eeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEEEE
Q 040385 125 CSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 191 (827)
Q Consensus 125 ~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~~ 191 (827)
...+.++..+||.+|+.++....+++++..||. |.+ ..|.+ +.+|.++++.++..|.+-++
T Consensus 12 ~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi-~~G----k~L~D-~~tL~dygI~~gstL~Lvlr 72 (152)
T 3u5c_f 12 TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI-FAG----KQLED-GRTLSDYNIQKESTLHLVLR 72 (152)
T ss_dssp -------------------------------------------------------------------
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE-ECC----EEccc-cCcHHHcCCCCCCEEEEEee
Confidence 456778889999999999999999999888876 332 34544 67999999999887766666
No 121
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=59.01 E-value=11 Score=31.97 Aligned_cols=62 Identities=13% Similarity=0.274 Sum_probs=42.6
Q ss_pred CCCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEE
Q 040385 121 PRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILV 188 (827)
Q Consensus 121 ~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~ 188 (827)
++....++.++...++.++++.+|+.|+++++++.|- ++. ..+ |.+..+.=++|-.+-.+-+
T Consensus 17 ~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lk--h~~---k~l-DLSlpfRlsgLpnnAkLEL 78 (90)
T 2al3_A 17 PNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLK--FQR---TVL-DLSLQWRFANLPNNAKLEM 78 (90)
T ss_dssp TTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEE--ETT---EEE-SSSCBHHHHCCCSSCEEEE
T ss_pred CCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEE--eCC---Eec-cccceeEecCCCCCCEEEE
Confidence 4455678889999999999999999999998876553 211 112 4444555566666655433
No 122
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=58.76 E-value=30 Score=29.98 Aligned_cols=65 Identities=23% Similarity=0.338 Sum_probs=54.5
Q ss_pred ceEEEEEEcCCCCCcCeEEEEEecCCCcHHHHHHHHHhhcCCCCCCcEEEEEEeCC-ceEEeccCccccc
Q 040385 413 RTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNH-SIQRFLDDPLISL 481 (827)
Q Consensus 413 ~~~~~~~~~~~~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~-~~~~~~~d~~~~l 481 (827)
....+.|+..||+. ..|.|.+..++.++++.|........+....++|..-+ .+-|+|+|....+
T Consensus 8 ~k~vvkvf~~Dgss----ksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vv 73 (100)
T 1wgr_A 8 RPHVVKVYSEDGAC----RSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVV 73 (100)
T ss_dssp SCEEEEEEETTSCE----EEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHH
T ss_pred CCEEEEEEecCCCE----EEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHH
Confidence 45678899999875 57899999999999999999999988899999998765 7889998765443
No 123
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=57.35 E-value=58 Score=27.77 Aligned_cols=71 Identities=23% Similarity=0.254 Sum_probs=48.1
Q ss_pred ceEEEEEEcCCCCCcCeEEEEEecCCCcHHHHHHHHHhhcCCCCCCcEEEEEEeCCceEEeccCccccc--cccCCCCcE
Q 040385 413 RTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISL--STIKDDDHL 490 (827)
Q Consensus 413 ~~~~~~~~~~~~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~d~~~~l--~~i~~~d~i 490 (827)
..+.|.+-...|. ++.+.+..+.++.+|++.+++..|+++....+ +|..++ ++|. ..| ..|.++..|
T Consensus 20 ~mIqI~Vk~~~Gk----k~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrL---if~Gk~---LkD~-~TL~dY~I~dgstL 88 (93)
T 3plu_A 20 HMIEVVVNDRLGK----KVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVL---QKGGSV---LKDH-ISLEDYEVHDQTNL 88 (93)
T ss_dssp CEEEEEEECTTSC----EEEEEEETTSBHHHHHHHHHHHHTCCGGGEEE---EETTEE---CCTT-SBTGGGTCCTTCEE
T ss_pred ceEEEEEECCCCC----EEEEEECCcCHHHHHHHHHHHHhCCCHHHEEE---EeCCEE---ccCc-CCHHHcCCCCCCEE
Confidence 3445555545554 46788899999999999999999998654433 455544 5553 233 467788887
Q ss_pred EEEE
Q 040385 491 AAYR 494 (827)
Q Consensus 491 ~~ye 494 (827)
..|-
T Consensus 89 hL~~ 92 (93)
T 3plu_A 89 ELYY 92 (93)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7764
No 124
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=55.56 E-value=21 Score=29.89 Aligned_cols=35 Identities=9% Similarity=0.020 Sum_probs=31.2
Q ss_pred CeeEEEecccccHHHHHHHHHHHhCCCCccEEEEE
Q 040385 124 ECSTIRISKKETIGELHRRACSIFYLNLEQICIWD 158 (827)
Q Consensus 124 ~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~ 158 (827)
....+.+.+..++.+|.+++++.|+++.+.+.|+-
T Consensus 14 ~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsY 48 (83)
T 1oey_A 14 YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSY 48 (83)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEe
Confidence 56788999999999999999999999988888863
No 125
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=54.48 E-value=23 Score=37.54 Aligned_cols=65 Identities=9% Similarity=0.147 Sum_probs=46.9
Q ss_pred CCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeEEEE
Q 040385 122 RGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVE 189 (827)
Q Consensus 122 ~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E 189 (827)
.+....+.+...+|+.+|++++....+++++.-||.- .+-++..|.+ +.+|.++++..|..|.+=
T Consensus 13 ~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~--~k~~Gk~l~D-~~~L~~~~ik~g~~l~L~ 77 (320)
T 3shq_A 13 SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLN--LKYKGKTAAD-NVKISALELKPNFKLMMV 77 (320)
T ss_dssp TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETT--CBSSSSBCCT-TSBTTSSCCC--CEEEEE
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEee--cccCCcccCc-cccHHHcCCCCCCEEEEE
Confidence 3445678889999999999999999999998777641 1012344554 678999999999877553
No 126
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=54.34 E-value=75 Score=26.75 Aligned_cols=34 Identities=6% Similarity=-0.209 Sum_probs=28.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhcCCCCCCcEEE
Q 040385 429 STYTVTVPKHGRCRDLIQVLGNICSLKQSEELKV 462 (827)
Q Consensus 429 ~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~ 462 (827)
..++++++...++.+|++.|+..+|+++...-++
T Consensus 19 ~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~ 52 (95)
T 1v6e_A 19 FRSEKRYSRSLTIAEFKCKLELVVGSPASCMELE 52 (95)
T ss_dssp SCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCE
T ss_pred eeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEE
Confidence 3478899999999999999999999987654444
No 127
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=53.77 E-value=36 Score=28.87 Aligned_cols=62 Identities=18% Similarity=0.209 Sum_probs=41.0
Q ss_pred EEEEecCCCcHHHHHHHHHhhcCCCCCCcEEEEEEeC-CceEEeccCcccccc--ccCCCCcEEE
Q 040385 431 YTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQN-HSIQRFLDDPLISLS--TIKDDDHLAA 492 (827)
Q Consensus 431 ~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~-~~~~~~~~d~~~~l~--~i~~~d~i~~ 492 (827)
..+++++..++.+|+..++..+|++....-+...... .....-+.|...+|. .+.+++.|.+
T Consensus 25 ~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V 89 (97)
T 1wjn_A 25 LEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLV 89 (97)
T ss_dssp EEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEE
Confidence 5678899999999999999999998766555443211 112222445555554 4667777654
No 128
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=53.02 E-value=76 Score=28.22 Aligned_cols=64 Identities=16% Similarity=0.052 Sum_probs=39.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhcCCCCCCcEEEEEEeCCceEEeccCcccccc--ccCCCCcEEE
Q 040385 429 STYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLS--TIKDDDHLAA 492 (827)
Q Consensus 429 ~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~d~~~~l~--~i~~~d~i~~ 492 (827)
..++++++...++.+|++.|...+|+++..+-+...-..+++...+.+....|. .|.++..|.+
T Consensus 18 ~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihv 83 (122)
T 1t0y_A 18 FPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHA 83 (122)
T ss_dssp SCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEE
T ss_pred ccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEE
Confidence 347788999999999999999999998766544433222333222222234443 3455555443
No 129
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=51.38 E-value=51 Score=28.23 Aligned_cols=56 Identities=20% Similarity=0.195 Sum_probs=37.4
Q ss_pred EEEEEecCCCcHHHHHHHHHhhcCCCCCCcEEEEEEeCCceEEeccCcccccc--ccCCCCcEE
Q 040385 430 TYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLS--TIKDDDHLA 491 (827)
Q Consensus 430 ~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~d~~~~l~--~i~~~d~i~ 491 (827)
.+.++++.+.++.+|++.++..++++..+.-++ |.. +.+.|....|. .|.+++.|+
T Consensus 23 ~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~---~~g---k~L~D~~~tL~~ygI~~g~~l~ 80 (102)
T 1v5o_A 23 TFSLQVNPDFELSNFRVLCELESGVPAEEAQIV---YME---QLLTDDHCSLGSYGLKDGDMVV 80 (102)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEE---ETT---EEECCSSSBHHHHTCCTTEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEE---ECC---EECCCCcccHHHCCCCCCCEEE
Confidence 467889999999999999999999976554433 344 34555433443 355555443
No 130
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=51.33 E-value=5.7 Score=36.39 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=20.0
Q ss_pred CCCccCcccCCCccchhhHHHhh
Q 040385 272 SVGLTGLLNLGNTCFMNSAIQCL 294 (827)
Q Consensus 272 ~~g~~GL~NlGNTCYmNSvLQcL 294 (827)
...+.|+.|--++|++|++||..
T Consensus 10 kk~fys~pN~hdncWLNtilQLf 32 (167)
T 1qmy_A 10 KKTFYSRPNNHDNAWLNAILQLF 32 (167)
T ss_dssp EEECCCCCCSSSCHHHHHHHHHH
T ss_pred ccccccCCCCCcchHHHHHHHHH
Confidence 34578999999999999999964
No 131
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=50.96 E-value=40 Score=28.61 Aligned_cols=47 Identities=17% Similarity=0.177 Sum_probs=34.2
Q ss_pred ccceEEEEEEcCCCCCcCeEEEEEecCCCcHHHHHHHHHhhcCCCCCCcEE
Q 040385 411 TTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELK 461 (827)
Q Consensus 411 ~~~~~~~~~~~~~~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~ 461 (827)
....+.+++...+|. .+.+++....++.+|++.+.+..+++....-+
T Consensus 19 ~~~~m~I~Vk~~~g~----~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL 65 (98)
T 4hcn_B 19 QGRPMQIFVKTLTGK----TITLEVESSDTIDNVKSKIQDKEGIPPDQQRL 65 (98)
T ss_dssp ---CCEEEEEETTCC----EEEEECCTTCBHHHHHHHHHHHHCCCGGGCEE
T ss_pred CCCeEEEEEEeCCCC----EEEEEECCCCcHHHHHHHHHHHhCCChhHEEE
Confidence 344566666666664 36788999999999999999999997655433
No 132
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=50.17 E-value=23 Score=38.22 Aligned_cols=63 Identities=16% Similarity=0.188 Sum_probs=47.4
Q ss_pred CCeeEEEecccccHHHHHHHHHHHh---CCCCccEEEEEeeCCccccccccccccccccccCCCCeE-EEEEE
Q 040385 123 GECSTIRISKKETIGELHRRACSIF---YLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDI-LVEVL 191 (827)
Q Consensus 123 ~~~~~~~~Sk~~ti~~l~~~~~~~f---~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~i-l~E~~ 191 (827)
.....+.+...+||.+|++++...+ +++.++.||. |. +..|.| +++|.+++|..+..| ++-.+
T Consensus 17 Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLi-y~----GK~L~D-~~tL~dygI~~gstIv~lv~k 83 (368)
T 1oqy_A 17 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLI-YA----GKILSD-DVPIRDYRIDEKNFVVVMVTK 83 (368)
T ss_dssp TEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEE-SS----SSEECS-SSBTTTTCCCTTSCEEEEEEC
T ss_pred CCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEE-EC----CeecCC-cCCHHHcCCCCCCEEEEEEec
Confidence 3445677888999999999999954 5888888875 32 345655 689999999999877 44444
No 133
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=49.52 E-value=67 Score=25.88 Aligned_cols=66 Identities=20% Similarity=0.166 Sum_probs=41.4
Q ss_pred EEEEEEcCCCCCcCeEEEEEecCCCcHHHHHHHHHhhcCCCCCCcEEEEEEeCCceEEeccCcccccc--ccCCCCcEE
Q 040385 415 MTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLS--TIKDDDHLA 491 (827)
Q Consensus 415 ~~~~~~~~~~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~d~~~~l~--~i~~~d~i~ 491 (827)
+.+++...++. .+.++++.+.++.+|++.+++..+++..+.-++ |+.+ .+.| ...+. .|.+++.|+
T Consensus 4 m~i~vk~~~g~----~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~---~~g~---~L~d-~~tL~~~~i~~~~~l~ 71 (85)
T 3mtn_B 4 MQIFVKTLTGK----TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGK---QLED-GRTLSDYNIQKWSTLF 71 (85)
T ss_dssp EEEEEECTTSC----EEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEE---ETTE---ECCT-TSBTGGGTCCTTCEEE
T ss_pred EEEEEEcCCCC----EEEEEECCCCCHHHHHHHHHHHHCcChHHEEEE---ECCE---ECCC-CCCHHHcCCCCCCEEE
Confidence 44455544443 367888999999999999999999976554433 3443 3443 23333 355555543
No 134
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=49.43 E-value=67 Score=27.32 Aligned_cols=62 Identities=13% Similarity=0.007 Sum_probs=39.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhcCCCCCCcEEEEEEeCCceEEeccCcccccc--ccCCCCcEE
Q 040385 429 STYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLS--TIKDDDHLA 491 (827)
Q Consensus 429 ~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~d~~~~l~--~i~~~d~i~ 491 (827)
..++++++...++.+|++.|...+|+++..+-++..- ..++.+.+.+....|. .|.++..|.
T Consensus 28 ~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~-~g~~~~~L~~D~~tL~~Y~i~~gstih 91 (95)
T 2kjr_A 28 VAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFK-GDTCVSTMDNNDAQLGYYANSDGLRLH 91 (95)
T ss_dssp EEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEE-TTEEEEECCCTTSBHHHHCCSSSCEEE
T ss_pred eEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEec-CCcccceeCCCCCCHhHCCcCCCCEEE
Confidence 3577889999999999999999999987665444321 2333333322234443 455555543
No 135
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=49.10 E-value=60 Score=29.36 Aligned_cols=65 Identities=9% Similarity=0.157 Sum_probs=43.8
Q ss_pred eEEEEEEcCCCCeeEEEecccccHHHHHHHHHHHh-----CCCC--ccEEEEEeeCCccccccccccccccccccCCC
Q 040385 113 LRLQLLVMPRGECSTIRISKKETIGELHRRACSIF-----YLNL--EQICIWDYYGHRKHALMNDMDRTLDDANIQMD 183 (827)
Q Consensus 113 ~~l~~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~f-----~i~~--~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~ 183 (827)
..+++..........+.+...+||.+|++++.... ++++ +..||- |. +..|.| ++||.++++..+
T Consensus 17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLI-y~----GK~LeD-~~TLsdy~I~~~ 88 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLI-SA----GKVLEN-SKTVKDYRSPVS 88 (126)
T ss_dssp EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEE-ET----TEECCT-TSBGGGGSCCTT
T ss_pred EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEE-EC----CeECcC-CCcHHHcCCCcC
Confidence 34444333333333688999999999999996543 5665 577773 32 235655 689999999876
No 136
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.63 E-value=31 Score=28.84 Aligned_cols=63 Identities=14% Similarity=0.267 Sum_probs=45.5
Q ss_pred EEEEcCC-CCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccC
Q 040385 116 QLLVMPR-GECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQ 181 (827)
Q Consensus 116 ~~~~~~~-~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~ 181 (827)
++..+.. +....+++|...++.+|+-.+|..-+.+++++-|..- ....+. .+.+++|.|++|.
T Consensus 12 RLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d--~~~~e~-LdLskSLndlgir 75 (91)
T 2daj_A 12 RVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKD--YQSQEP-LDLTKSLNDLGLR 75 (91)
T ss_dssp EEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESC--SSCCCB-CCTTSCHHHHTCS
T ss_pred EEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecC--CCCCcc-cchhcchhhhhhh
Confidence 3333433 4446789999999999999999999999988765422 222233 3678899999985
No 137
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=45.50 E-value=85 Score=28.43 Aligned_cols=37 Identities=16% Similarity=0.323 Sum_probs=31.0
Q ss_pred cCCCCeeEEEecccccHHHHHHHHHHHhCCCCc-cEEE
Q 040385 120 MPRGECSTIRISKKETIGELHRRACSIFYLNLE-QICI 156 (827)
Q Consensus 120 ~~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~-~~Rl 156 (827)
+.+....++.+.-..++.+++..+|+.+||... .+-|
T Consensus 18 llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L 55 (128)
T 2kc2_A 18 MLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSL 55 (128)
T ss_dssp CTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEE
T ss_pred cCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccc
Confidence 467788899999999999999999999999843 4544
No 138
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=45.06 E-value=62 Score=27.73 Aligned_cols=66 Identities=9% Similarity=0.107 Sum_probs=50.8
Q ss_pred eEEEEEEcCCCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeE
Q 040385 113 LRLQLLVMPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDI 186 (827)
Q Consensus 113 ~~l~~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~i 186 (827)
+.+++. .+.....+.+-+...++-|++..|+..|++.+.+|+- |.+.. ...+.|..++++..+..|
T Consensus 22 IniKV~--~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFl-fDG~r-----I~~~~TP~~L~meD~DiI 87 (95)
T 2l76_A 22 FPLKIR--CRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLL-FGETE-----LSPTATPRTLKLGVADII 87 (95)
T ss_dssp EEEEEE--CSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEE-ETTEE-----CCTTSCHHHHTCCSSCEE
T ss_pred EEEEEE--cCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEE-ECCcC-----CCCCCCHhHcCCCCCCEE
Confidence 566665 4567789999999999999999999999999999864 33221 234678888888877654
No 139
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=44.70 E-value=58 Score=27.88 Aligned_cols=34 Identities=6% Similarity=-0.027 Sum_probs=28.8
Q ss_pred EEEEEecCCCcHHHHHHHHHhhcCCCCCCcEEEE
Q 040385 430 TYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVA 463 (827)
Q Consensus 430 ~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~ 463 (827)
.++++++...++.+|++.|...+|+++..+-++.
T Consensus 28 ~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~ 61 (97)
T 2kj6_A 28 SADARFSPQMSVEAVKEKLWKKCGTSVNSMALEL 61 (97)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEE
T ss_pred EEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEE
Confidence 4788999999999999999999999876655543
No 140
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=40.12 E-value=88 Score=26.05 Aligned_cols=64 Identities=19% Similarity=0.212 Sum_probs=40.0
Q ss_pred EEEEcCCCCCcCeEEEEEecCCCcHHHHHHHHHhhcCCCCCCcEEEEEEeCCceEEeccCcccccc--ccCCCCcEE
Q 040385 417 VTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLS--TIKDDDHLA 491 (827)
Q Consensus 417 ~~~~~~~~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~d~~~~l~--~i~~~d~i~ 491 (827)
+++...+|. .+.++++.+.++.+|++.+++..+++....-++ |+.+ .+.|. ..|. .|.+++.|+
T Consensus 4 i~vk~~~g~----~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~---~~G~---~L~d~-~tL~~~~i~~~~~i~ 69 (96)
T 3k9o_B 4 IFVKTLTGK----TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGK---QLEDG-RTLSDYNIQKESTLH 69 (96)
T ss_dssp EEEEETTCC----EEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE---ETTE---ECCTT-SBTGGGTCCTTCEEE
T ss_pred EEEEeCCCC----EEEEEECCCCCHHHHHHHHHhhhCCChhHEEEE---ECCE---ECCCC-CcHHHcCCCCCCEEE
Confidence 444444443 367888999999999999999999976443332 4443 34432 2333 355555554
No 141
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=39.98 E-value=52 Score=28.76 Aligned_cols=86 Identities=16% Similarity=0.114 Sum_probs=46.5
Q ss_pred EEEeCCCCccc--eEEEEEEcCCCCCcCeEEEEEecCCCcHHHHHHHHHhhcCCCCCCcEEEEEEeCCceEEeccCcccc
Q 040385 403 LSLPLQATTTR--TMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLIS 480 (827)
Q Consensus 403 LsL~lp~~~~~--~~~~~~~~~~~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~d~~~~ 480 (827)
||+.|...... .+.+.++..|.......+.+.+....++.+|++.+.+..|+++...-++ +..+ ..+| ...
T Consensus 9 l~v~~~~~~~~~~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli---~ggk---ll~D-~~T 81 (105)
T 4dbg_A 9 LSVQLKPEVSPTQDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWV---IGQR---LARD-QET 81 (105)
T ss_dssp -----------CCCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE---ETTE---EECT-TCB
T ss_pred eEEEecCCcCCCCcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEe---ccCe---EccC-cCc
Confidence 44555444322 4555555555443346788999999999999999999999986543322 3333 2333 233
Q ss_pred c--ccc-CCCCcEEEEEc
Q 040385 481 L--STI-KDDDHLAAYRV 495 (827)
Q Consensus 481 l--~~i-~~~d~i~~ye~ 495 (827)
+ ..| .+++.+..|-+
T Consensus 82 L~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 82 LHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp TGGGTCCSTTCEEEEEEC
T ss_pred HHHcCCCCCCCEEEEEEE
Confidence 3 245 36666655533
No 142
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=38.57 E-value=61 Score=28.26 Aligned_cols=64 Identities=13% Similarity=0.236 Sum_probs=49.7
Q ss_pred EEEEecCCCcHHHHHHHHHhhcCCCCCCcEEEEEEeCCceEEeccCccccc-cccCCCCcEEEEEc
Q 040385 431 YTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISL-STIKDDDHLAAYRV 495 (827)
Q Consensus 431 ~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~d~~~~l-~~i~~~d~i~~ye~ 495 (827)
.+++++...++.+++..+++..+.. .+.++++++..+.-...|+..+..+ +.+.-+.+++++.-
T Consensus 22 ~tvr~~v~~sa~eIl~~va~kl~~~-~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~k 86 (104)
T 1wgy_A 22 VSVKAKVSSIAQEILKVVAEKIQYA-EEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRK 86 (104)
T ss_dssp EEECCCTTCBSHHHHHHHHHHHTSC-GGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEEC
T ss_pred EEEEEeccchHHHHHHHHHHHhcCC-ccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 5678888899999999999988764 2479999998877667777555444 46788888887754
No 143
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.38 E-value=96 Score=24.66 Aligned_cols=45 Identities=18% Similarity=0.244 Sum_probs=32.7
Q ss_pred eEEEEEEcCCCCCcCeEEEEEecCCCcHHHHHHHHHhhcCCCCCCcEEE
Q 040385 414 TMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKV 462 (827)
Q Consensus 414 ~~~~~~~~~~~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~ 462 (827)
.+.+++...+|. .+.++++.+.++.+|++.+++..+++....-++
T Consensus 7 ~m~i~vk~~~g~----~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~ 51 (81)
T 2dzi_A 7 GMQLTVKALQGR----ECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLL 51 (81)
T ss_dssp SEEEEEEETTSC----EEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEE
T ss_pred cEEEEEEeCCCC----EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEE
Confidence 345555544443 357889999999999999999999976554443
No 144
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=38.26 E-value=93 Score=33.28 Aligned_cols=72 Identities=10% Similarity=0.073 Sum_probs=55.1
Q ss_pred eEEEEEEcCCCCeeEEEecccccHHHHHHHHHHHhCC----CCccEEEEEeeC-CccccccccccccccccccCCCCeEE
Q 040385 113 LRLQLLVMPRGECSTIRISKKETIGELHRRACSIFYL----NLEQICIWDYYG-HRKHALMNDMDRTLDDANIQMDQDIL 187 (827)
Q Consensus 113 ~~l~~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i----~~~~~RlW~~~~-~~~~~ll~~~~~tl~d~~l~~~q~il 187 (827)
+.|+|.+. +..+++.|....||.|..+++++.+.- +.++.-||.... ..+...|.. .+||+.+++..+..|.
T Consensus 4 ~~~~~~~~--~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~-~~~l~~y~~~~~~~l~ 80 (371)
T 3ivf_A 4 LSLKISIG--NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEA-GKALDYYMLRNGDTME 80 (371)
T ss_dssp EEEEEEET--TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCT-TSBGGGGTCCTTCEEE
T ss_pred EEEEEEec--ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccC-CCCHHHhCCCCCceee
Confidence 56677665 566899999999999999999998853 467899998665 345555644 5699999998875443
No 145
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=37.87 E-value=60 Score=29.25 Aligned_cols=65 Identities=12% Similarity=0.178 Sum_probs=45.9
Q ss_pred cCCCCeeEEEecccccHHHHHHHHHHHhC-CCCccEEEEEeeCCccccccccccccccccccCCCCeEEE
Q 040385 120 MPRGECSTIRISKKETIGELHRRACSIFY-LNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILV 188 (827)
Q Consensus 120 ~~~~~~~~~~~Sk~~ti~~l~~~~~~~f~-i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~ 188 (827)
+++.......|...+||.+|...+..... .....++|.--+.. ..+.+.++||+|++|.. ..+++
T Consensus 59 lpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPr---k~l~d~~~TL~eagL~p-savl~ 124 (127)
T 1s3s_G 59 LADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPN---KELADENQTLKEANLLN-AVIVQ 124 (127)
T ss_dssp ETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTT---EECCSTTCBHHHHTCSS-CEEEE
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCC---CCCCCCCCcHHHCCCcC-ceEEE
Confidence 46777778899999999999999988642 34456666542222 23446789999999986 44444
No 146
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=36.30 E-value=77 Score=26.27 Aligned_cols=46 Identities=13% Similarity=0.145 Sum_probs=35.2
Q ss_pred cceEEEEEEcCCCCCcCeEEEEEecCCCcHHHHHHHHHhhcCCCCCCcEE
Q 040385 412 TRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELK 461 (827)
Q Consensus 412 ~~~~~~~~~~~~~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~ 461 (827)
...+.+++...+|. .+.+.+....++.+|++.+.+..|++....-+
T Consensus 15 ~~~m~i~Vk~~~g~----~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL 60 (91)
T 3v6c_B 15 RGSMQIFVNTLTGT----HITLEVEPSDTIENVKAKIQDKEGIPPDQQRL 60 (91)
T ss_dssp CCSEEEEEECTTSC----EEEEEECTTCBHHHHHHHHHHHHCCCGGGCEE
T ss_pred CCeEEEEEEeCCCC----EEEEEECCCCCHHHHHHHHHhhhCCChhhEEE
Confidence 34566777666664 36788999999999999999999997655433
No 147
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=36.06 E-value=66 Score=26.40 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=32.7
Q ss_pred ceEEEEEEcCCCCCcCeEEEEEecCCCcHHHHHHHHHhhcCCCCCCc
Q 040385 413 RTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEE 459 (827)
Q Consensus 413 ~~~~~~~~~~~~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~ 459 (827)
..+.+++-..+|. .+.+.+..+.++.+|++.++...++++...
T Consensus 16 ~~m~i~Vk~~~g~----~~~~~v~~~~tV~~lK~~i~~~~gip~~~q 58 (88)
T 4eew_A 16 DSLEVLVKTLDSQ----TRTFIVGAQMNVKEFKEHIAASVSIPSEKQ 58 (88)
T ss_dssp CEEEEEEEETTSC----EEEEEEETTCBHHHHHHHHHHHHTCCGGGE
T ss_pred CeEEEEEEcCCCC----EEEEEECCCCCHHHHHHHHHHHhCCCHHHE
Confidence 3456666666654 356788899999999999999999976544
No 148
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=35.65 E-value=93 Score=26.50 Aligned_cols=45 Identities=13% Similarity=0.133 Sum_probs=33.7
Q ss_pred ccceEEEEEEcCCCCCcCeEEEEEecCCCcHHHHHHHHHhhcCCCCCCcE
Q 040385 411 TTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEEL 460 (827)
Q Consensus 411 ~~~~~~~~~~~~~~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l 460 (827)
....+.+++-..++ ++.++++.+.++.+|++.+++..+++....-
T Consensus 19 ~~~~m~I~Vk~~~g-----~~~l~v~~~~TV~~LK~~I~~~~gip~~~Qr 63 (100)
T 1yqb_A 19 SPHLIKVTVKTPKD-----KEDFSVTDTCTIQQLKEEISQRFKAHPDQLV 63 (100)
T ss_dssp CTTEEEEEEECSSC-----EEEEEEETTCBHHHHHHHHHHHHTCCGGGEE
T ss_pred CCCeEEEEEEcCCC-----cEEEEECCCCcHHHHHHHHHHHHCcChhhEE
Confidence 34556666666655 2578889999999999999999999754433
No 149
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=34.55 E-value=1.3e+02 Score=24.20 Aligned_cols=54 Identities=13% Similarity=0.145 Sum_probs=35.8
Q ss_pred EEEEecCCCcHHHHHHHHHhhcCCCCCCcEEEEEEeCCceEEeccCcccccc--ccCCCCcEE
Q 040385 431 YTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLS--TIKDDDHLA 491 (827)
Q Consensus 431 ~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~d~~~~l~--~i~~~d~i~ 491 (827)
+.++++.+.++.+|++.+++..+++..+.-++ |+.+ .++|. ..+. .|.+++.|+
T Consensus 16 ~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~---~~g~---~L~d~-~tL~~~~i~~~~~i~ 71 (85)
T 3n3k_B 16 IILEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGK---QLEDG-RTLSDYNIHNHSALY 71 (85)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE---ETBE---ECCTT-CBTTTTTCCTTCEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCCHHHEEEE---ECCe---ECCCC-CCHHHCCCCCCCEEE
Confidence 67888999999999999999999976554333 3332 34442 3333 355566554
No 150
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=34.35 E-value=35 Score=38.78 Aligned_cols=37 Identities=14% Similarity=0.347 Sum_probs=32.9
Q ss_pred eEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCC
Q 040385 126 STIRISKKETIGELHRRACSIFYLNLEQICIWDYYGH 162 (827)
Q Consensus 126 ~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~ 162 (827)
..+++-|..|+.+|++.+.+.||++.+.+|||.....
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~R 74 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQAR 74 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEEC
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcC
Confidence 4678889999999999999999999999999976543
No 151
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=31.65 E-value=1.2e+02 Score=27.17 Aligned_cols=65 Identities=11% Similarity=0.156 Sum_probs=49.1
Q ss_pred EEEEecCCCcHHHHHHHHHhhcCCCC-----CCcEEEEEEeCCceEEeccCccccc-cccCCCCcEEEEEc
Q 040385 431 YTVTVPKHGRCRDLIQVLGNICSLKQ-----SEELKVAEIQNHSIQRFLDDPLISL-STIKDDDHLAAYRV 495 (827)
Q Consensus 431 ~~v~~~k~~~~~~l~~~l~~~~~~~~-----~~~l~~~e~~~~~~~~~~~d~~~~l-~~i~~~d~i~~ye~ 495 (827)
.+++++...++.+++..++...+... .+.++++++..+.-...|+..+..+ +.+.-+.+++++.-
T Consensus 22 ~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~NgRLfvc~k 92 (120)
T 2dhz_A 22 VTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSHLFACTR 92 (120)
T ss_dssp CCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSEEEEEECT
T ss_pred EEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 45788889999999999998887643 2479999998887777787554444 46777888877643
No 152
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=31.54 E-value=94 Score=30.50 Aligned_cols=60 Identities=17% Similarity=0.216 Sum_probs=44.5
Q ss_pred CCCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeE
Q 040385 121 PRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDI 186 (827)
Q Consensus 121 ~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~i 186 (827)
.+.....+.+.+...+.-|++.-|+..+++.+.+|+- |.+.. + ..+.|..++.+.++..|
T Consensus 28 ~~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~-fdG~~----i-~~~~Tpk~L~~ed~d~I 87 (209)
T 3uf8_A 28 DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFL-YDGIR----I-QADQTPEDLDMEDNDII 87 (209)
T ss_dssp CSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEE-ETTEE----C-CTTCCTTTTTCCTTEEE
T ss_pred cCCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEE-ECCEe----c-cCCCChHHhhhcccccc
Confidence 3555678999999999999999999999999999874 33322 1 23567777777665544
No 153
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=31.43 E-value=10 Score=37.54 Aligned_cols=65 Identities=17% Similarity=0.231 Sum_probs=0.0
Q ss_pred EEEEEEcCCCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCccccccccccccccccccCCCCeE
Q 040385 114 RLQLLVMPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDI 186 (827)
Q Consensus 114 ~l~~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~i 186 (827)
.++| ..+.....+.+.+...+..|++..|+..+++.+.+|+. |.++. + ..+.|+.++++.++..|
T Consensus 23 nLKV--~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFL-FDGqR----I-~dddTPadL~MEDGDtI 87 (227)
T 3v7o_A 23 NLKV--SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFL-YDGIR----I-QADQTPEDLDMEDNDII 87 (227)
T ss_dssp -------------------------------------------------------------------------
T ss_pred EEEE--eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEE-ECCEe----c-CCCCCHHHcCCCCCCEE
Confidence 3444 33556678999999999999999999999999988864 33322 3 23679999999888755
No 154
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=31.36 E-value=90 Score=25.35 Aligned_cols=43 Identities=9% Similarity=0.187 Sum_probs=32.4
Q ss_pred ceEEEEEEcCCCCCcCeEEEEEecCCCcHHHHHHHHHhhcCCCCCCc
Q 040385 413 RTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEE 459 (827)
Q Consensus 413 ~~~~~~~~~~~~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~ 459 (827)
..+.+++...++. .+.++++.+.++.+|++.+....+++....
T Consensus 11 ~~m~i~vk~~~g~----~~~~~v~~~~tV~~lK~~i~~~~gip~~~q 53 (88)
T 3dbh_I 11 GSMLIKVKTLTGK----EIEIDIEPTDKVERIKERVEEKEGIPPQQQ 53 (88)
T ss_dssp CCEEEEEECTTSC----EEEEEECTTCBHHHHHHHHHHHHCCCGGGC
T ss_pred CcEEEEEEcCCCC----EEEEEECCCCCHHHHHHHHHHHHCcCHHHE
Confidence 3455666555554 367888999999999999999999976543
No 155
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=31.03 E-value=1.1e+02 Score=25.05 Aligned_cols=43 Identities=14% Similarity=0.121 Sum_probs=31.7
Q ss_pred EEEEEEcCCCCCcCeEEEEEecCCCcHHHHHHHHHhhcCCCCCCcEE
Q 040385 415 MTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELK 461 (827)
Q Consensus 415 ~~~~~~~~~~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~ 461 (827)
+.+++-..+|. .+.++++.+.++.+|++.++...|+++...-+
T Consensus 5 m~I~Vk~~~g~----~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL 47 (88)
T 2hj8_A 5 LSILVRNNKGR----SSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWL 47 (88)
T ss_dssp EEEEEEETTSC----EEEEEEESSSBHHHHHHHHHHHTCSCTTTEEE
T ss_pred EEEEEECCCCC----EEEEEECCCCcHHHHHHHHHHHhCCChhHEEE
Confidence 44555555553 35678889999999999999999998655443
No 156
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=30.79 E-value=1.3e+02 Score=24.45 Aligned_cols=44 Identities=18% Similarity=0.226 Sum_probs=32.4
Q ss_pred eEEEEEEcCCCCCcCeEEEEEecCCCcHHHHHHHHHhhcCCCCCCcEE
Q 040385 414 TMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELK 461 (827)
Q Consensus 414 ~~~~~~~~~~~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~ 461 (827)
.+.+++...++. .+.++++.+.++.+|++.+++..+++....-+
T Consensus 7 ~m~i~Vk~~~g~----~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL 50 (87)
T 1wh3_A 7 GIQVFVKNPDGG----SYAYAINPNSFILGLKQQIEDQQGLPKKQQQL 50 (87)
T ss_dssp SEEEEEEETTTE----EEEEEECSSSBHHHHHHHHHHHTCCCTTTEEE
T ss_pred CEEEEEEcCCCC----EEEEEeCCCChHHHHHHHHHHHhCCChHHEEE
Confidence 345555555543 35788899999999999999999997655443
No 157
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=30.73 E-value=88 Score=25.68 Aligned_cols=43 Identities=16% Similarity=0.125 Sum_probs=32.3
Q ss_pred EEEEEEcCCCCCcCeEEEEEecCCCcHHHHHHHHHhhcCCCCCCcEE
Q 040385 415 MTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELK 461 (827)
Q Consensus 415 ~~~~~~~~~~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~ 461 (827)
+.+++....|. .+.++++.+.++.+|++.++...|+++...-+
T Consensus 11 ~~i~vk~l~g~----~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL 53 (84)
T 2kk8_A 11 MKFLVENLNGS----SFELEVDYRDTLLVVKQKIERSQHIPVSKQTL 53 (84)
T ss_dssp EEEEEEETTSC----EEEEEECTTSBHHHHHHHHHHHHTCCGGGEEE
T ss_pred eEEEEEecCCc----EEEEEECCCChHHHHHHHHHHHHCcChHHEEE
Confidence 45555555553 36788999999999999999999997654433
No 158
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=30.32 E-value=1.6e+02 Score=25.16 Aligned_cols=44 Identities=14% Similarity=0.108 Sum_probs=32.6
Q ss_pred ceEEEEEEcCCCCCcCeEEEEEecCCCcHHHHHHHHHhhcCCCCCCcEE
Q 040385 413 RTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELK 461 (827)
Q Consensus 413 ~~~~~~~~~~~~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~ 461 (827)
..+.+++....+ ++.+++..+.++.+|++.|....++.....-+
T Consensus 16 ~~m~I~Vk~~~g-----~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL 59 (106)
T 1wx7_A 16 HLIKVTVKTPKD-----KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVL 59 (106)
T ss_dssp SEEEEEEECSSC-----EEEEEEETTCCHHHHHHHHHHHHTCCTTTEEE
T ss_pred ceEEEEEEeCCC-----cEEEEECCCCcHHHHHHHHHHHHCcChhhEEE
Confidence 445666655554 25788999999999999999999997654333
No 159
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=29.70 E-value=79 Score=26.08 Aligned_cols=43 Identities=14% Similarity=0.198 Sum_probs=32.3
Q ss_pred EEEEEEcCCCCCcCeEEEEEecCCCcHHHHHHHHHhhcCCCCCCcEE
Q 040385 415 MTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELK 461 (827)
Q Consensus 415 ~~~~~~~~~~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~ 461 (827)
+.+.+...+|. .+.++++.+.++.+|++.+++..++++...-+
T Consensus 10 ~~i~v~~~~G~----~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL 52 (88)
T 1sif_A 10 LQLFIKTLTGK----TFTVEMEPSDTIENLKAKIQDKEGIPPDQQRL 52 (88)
T ss_dssp CEEEEEETTSC----EEEEECCTTSBHHHHHHHHHHHHCCCGGGCEE
T ss_pred eEEEEEeCCCC----EEEEEECCCChHHHHHHHHHHHHCcChhhEEE
Confidence 34555556664 36788999999999999999999997654433
No 160
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=29.01 E-value=1.8e+02 Score=24.61 Aligned_cols=56 Identities=16% Similarity=0.170 Sum_probs=37.2
Q ss_pred EEEEEecCCCcHHHHHHHHHhhcCCCCCCcEEEEEEeCCceEEeccCcccccc--ccCCCCcEEE
Q 040385 430 TYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLS--TIKDDDHLAA 492 (827)
Q Consensus 430 ~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~d~~~~l~--~i~~~d~i~~ 492 (827)
.+.++++.+.++.+|++.++...|++....-+ +|.++ .+.| ...|. .|.+++.|++
T Consensus 36 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL---i~~Gk---~L~D-~~tL~~~gI~~g~~I~l 93 (101)
T 2klc_A 36 KEEFAVPENSSVQQFKEEISKRFKSHTDQLVL---IFAGK---ILKD-QDTLSQHGIHDGLTVHL 93 (101)
T ss_dssp EEEEEECSCCCHHHHHHHHHHHHTCCGGGEEE---EETTE---EECT-TCCTGGGTCCTTCEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCcChhhEEE---EECCE---ECCC-cCcHHHcCCCCCCEEEE
Confidence 36788899999999999999999997644333 34543 3443 23443 4556665544
No 161
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=28.44 E-value=96 Score=26.23 Aligned_cols=53 Identities=9% Similarity=0.092 Sum_probs=36.5
Q ss_pred EE-EEEecCCCcHHHHHHHHHhhcCCCCCCcEEEEEEeCCceEEeccCcccccc--ccCCCCcE
Q 040385 430 TY-TVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLS--TIKDDDHL 490 (827)
Q Consensus 430 ~~-~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~d~~~~l~--~i~~~d~i 490 (827)
.+ .+.++.+.++.+|++.|+..+|++..+.-++ |.++ .+.|. .+. .|.+++.|
T Consensus 18 ~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi---~~Gk---~L~D~--tL~~~~I~~g~~i 73 (96)
T 1wgg_A 18 KFEGVELNTDEPPMVFKAQLFALTGVQPARQKVM---VKGG---TLKDD--DWGNIKMKNGMTV 73 (96)
T ss_dssp EEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCE---ETTE---ECCSS--CCCSCCCCSSCEE
T ss_pred EEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE---ECCc---CCCCC--CHHHCCCCCCCEE
Confidence 46 4888999999999999999999987654444 4444 34443 443 34555554
No 162
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=28.34 E-value=87 Score=24.42 Aligned_cols=29 Identities=7% Similarity=0.117 Sum_probs=24.8
Q ss_pred EEEEecCCCcHHHHHHHHHhhcCCCCCCc
Q 040385 431 YTVTVPKHGRCRDLIQVLGNICSLKQSEE 459 (827)
Q Consensus 431 ~~v~~~k~~~~~~l~~~l~~~~~~~~~~~ 459 (827)
+.++++.+.++.+|++.+++..+++....
T Consensus 13 ~~i~v~~~~tv~~lK~~i~~~~~i~~~~q 41 (76)
T 3a9j_A 13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQ 41 (76)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcCHHHe
Confidence 57788999999999999999999976443
No 163
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=28.14 E-value=1.5e+02 Score=25.56 Aligned_cols=44 Identities=11% Similarity=0.097 Sum_probs=33.2
Q ss_pred eEEEEEEcCCCCCcCeEEEEEecCCCcHHHHHHHHHhhcCCCCCCcEE
Q 040385 414 TMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELK 461 (827)
Q Consensus 414 ~~~~~~~~~~~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~ 461 (827)
.+.+++-...|.. +.+.+..+.++.+|++.++...|++..+..+
T Consensus 28 mm~I~VKtl~Gk~----i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrL 71 (100)
T 1uh6_A 28 MIEVVCNDRLGKK----VRVKCNTDDTIGDLKKLIAAQTGTRWNKIVL 71 (100)
T ss_dssp EEEEEEECSSSSC----EEEEEETTSBHHHHHHHHHHHHCCCGGGCEE
T ss_pred eEEEEEECCCCCE----EEEEeCCCCcHHHHHHHHHHHhCCCHHHEEE
Confidence 4666666666632 5688889999999999999999997544333
No 164
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=27.38 E-value=3.2e+02 Score=24.12 Aligned_cols=67 Identities=16% Similarity=0.183 Sum_probs=41.9
Q ss_pred eEEEEEEcCCCCCcCeEEEEEecCCCcHHHHHHHHHhhcCCCCCCcEEEEEEeCCceEEeccCcccccc--ccCCCCcEE
Q 040385 414 TMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLS--TIKDDDHLA 491 (827)
Q Consensus 414 ~~~~~~~~~~~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~d~~~~l~--~i~~~d~i~ 491 (827)
.+.+++... +. .+.++++.+.++.+|++.+....++.....-++ |..+ .+.| ...|. .|.+++.|+
T Consensus 32 ~m~I~Vk~~-g~----~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi---~~Gk---~L~D-~~tL~dygI~~gstI~ 99 (125)
T 1j8c_A 32 IIKVTVKTP-KE----KEEFAVPENSSVQQFKEAISKRFKSQTDQLVLI---FAGK---ILKD-QDTLIQHGIHDGLTVH 99 (125)
T ss_dssp CEEEEEECS-SC----EEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEE---ETTE---EEST-TSCGGGTTCSSSEEEE
T ss_pred cEEEEEEeC-Ce----EEEEEECCCCcHHHHHHHHHHHHCcCcceEEEE---ECCE---EcCC-CCCHHHcCCCCCCEEE
Confidence 345555444 32 367888999999999999999999976554433 4444 3443 23343 355555544
Q ss_pred E
Q 040385 492 A 492 (827)
Q Consensus 492 ~ 492 (827)
+
T Consensus 100 l 100 (125)
T 1j8c_A 100 L 100 (125)
T ss_dssp E
T ss_pred E
Confidence 3
No 165
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=26.91 E-value=1.2e+02 Score=24.19 Aligned_cols=41 Identities=15% Similarity=0.149 Sum_probs=30.9
Q ss_pred EEEEEEcCCCCCcCeEEEEEecCCCcHHHHHHHHHhhcCCCCCCc
Q 040385 415 MTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEE 459 (827)
Q Consensus 415 ~~~~~~~~~~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~ 459 (827)
+.+++...+|. .+.+.++.+.++.+|++.++...|+++...
T Consensus 5 m~i~Vk~~~g~----~~~~~v~~~~tV~~lK~~i~~~~gip~~~q 45 (79)
T 3phx_B 5 LSILVRNNKGR----SSTYEVRLTQTVAHLKQQVSGLEGVQDDLF 45 (79)
T ss_dssp EEEEEECTTSC----EEEEEECTTSBHHHHHHHHHHHHTCCGGGE
T ss_pred EEEEEEeCCCC----EEEEEECCcChHHHHHHHHHhhcCCCHHHE
Confidence 44555555553 356788999999999999999999976543
No 166
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=26.85 E-value=97 Score=24.14 Aligned_cols=29 Identities=0% Similarity=0.118 Sum_probs=24.7
Q ss_pred EEEEecCCCcHHHHHHHHHhhcCCCCCCc
Q 040385 431 YTVTVPKHGRCRDLIQVLGNICSLKQSEE 459 (827)
Q Consensus 431 ~~v~~~k~~~~~~l~~~l~~~~~~~~~~~ 459 (827)
+.++++.+.++.+|++.+++..++++...
T Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~~i~~~~q 41 (76)
T 1ndd_A 13 IEIDIEPTDKVERIKERVEEKEGIPPQQQ 41 (76)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGE
T ss_pred EEEEECCCChHHHHHHHHHHHHCcChHHE
Confidence 56788899999999999999999976443
No 167
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=26.21 E-value=2.7e+02 Score=24.28 Aligned_cols=66 Identities=12% Similarity=0.088 Sum_probs=45.2
Q ss_pred EEcCCCCeeEEEecccccHHHHHHHHHHHh--------CCCCccEEEEEeeCCccccccccccccccccccCCC
Q 040385 118 LVMPRGECSTIRISKKETIGELHRRACSIF--------YLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMD 183 (827)
Q Consensus 118 ~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~f--------~i~~~~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~ 183 (827)
++++.+--..+.+|+..|+.+|+..+=+.- -.+++.+..--+......+.+.|.++.|.|..+...
T Consensus 24 ~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf~p 97 (108)
T 2v1y_A 24 CLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLFQP 97 (108)
T ss_dssp EECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBSSS
T ss_pred EEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCCceEEEeEcCceEEEeccccce
Confidence 446777777889999999999998776541 123456655444443445567777888988887754
No 168
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=25.81 E-value=1e+02 Score=25.30 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=27.1
Q ss_pred EEEEEecCCCcHHHHHHHHHhhcCCCCCCcEEE
Q 040385 430 TYTVTVPKHGRCRDLIQVLGNICSLKQSEELKV 462 (827)
Q Consensus 430 ~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~ 462 (827)
.+.++++.+.++.+|++.+++..|+++...-++
T Consensus 23 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~ 55 (85)
T 2kd0_A 23 SIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLI 55 (85)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEE
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE
Confidence 467888999999999999999999986554443
No 169
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=25.59 E-value=1.1e+02 Score=25.30 Aligned_cols=31 Identities=0% Similarity=0.065 Sum_probs=26.0
Q ss_pred EEEEecCCCcHHHHHHHHHhhcCCCCCCcEE
Q 040385 431 YTVTVPKHGRCRDLIQVLGNICSLKQSEELK 461 (827)
Q Consensus 431 ~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~ 461 (827)
+.+.++.+.++.+|++.+++..+++....-+
T Consensus 13 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL 43 (88)
T 4fbj_B 13 IEIDIEPTDKVERIKERVEEKEGIPPQQQRL 43 (88)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGCEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHCcChhHEEE
Confidence 5788899999999999999999997655443
No 170
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=25.02 E-value=1.3e+02 Score=24.66 Aligned_cols=42 Identities=19% Similarity=0.225 Sum_probs=31.8
Q ss_pred eEEEEEEcCCCCCcCeEEEEEecCCCcHHHHHHHHHhhcCCCCCCc
Q 040385 414 TMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEE 459 (827)
Q Consensus 414 ~~~~~~~~~~~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~ 459 (827)
.+.+++-..+|. .+.+.+....++.+|++.+....+++....
T Consensus 5 ~m~i~Vk~~~g~----~~~~~v~~~~tV~~lK~~i~~~~gip~~~q 46 (90)
T 4dwf_A 5 SLEVLVKTLDSQ----TRTFIVGAQMNVKEFKEHIAASVSIPSEKQ 46 (90)
T ss_dssp EEEEEEEETTCC----EEEEEEETTCBHHHHHHHHHHHHTCCGGGE
T ss_pred EEEEEEEcCCCC----EEEEEECCCCCHHHHHHHHHHHhCCCHHHE
Confidence 355566555554 356788899999999999999999976544
No 171
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=24.85 E-value=22 Score=26.56 Aligned_cols=15 Identities=40% Similarity=0.937 Sum_probs=12.1
Q ss_pred CCCCCCCCccCcccc
Q 040385 696 VPEDMWYCPQCKERR 710 (827)
Q Consensus 696 ~~~d~~~C~~C~~~~ 710 (827)
+.+|.|.|..|+++.
T Consensus 7 ~~eD~WkC~~C~k~N 21 (53)
T 2cr8_A 7 GSEDEWQCTECKKFN 21 (53)
T ss_dssp CCSCCEECSSSCCEE
T ss_pred CCcceeecccccccC
Confidence 457889999999754
No 172
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=24.65 E-value=21 Score=29.58 Aligned_cols=36 Identities=11% Similarity=0.283 Sum_probs=22.6
Q ss_pred CCCCCccCcccceeEEEEEeeecCCeEEEEEe-eee-ec
Q 040385 699 DMWYCPQCKERRQASKKLDLWRLPEVLVIHLK-RFS-YS 735 (827)
Q Consensus 699 d~~~C~~C~~~~~a~k~~~i~~lP~vLiihLk-RF~-~~ 735 (827)
...+|++|+..+-......+..= --+.+||+ ||+ ++
T Consensus 29 ~k~FCp~CGn~TL~Rvsvsvd~~-G~~~~hl~~n~~~~n 66 (79)
T 2con_A 29 NRVFCGHCGNKTLKKVSVTINDD-GTLHMHFSRNPKVLN 66 (79)
T ss_dssp SCCSCSSSCCSCCEEEECBCCSS-CCCBCCCCCCCCCCC
T ss_pred ccccccccCcccceEEEEEECCC-CcEEEeccCCccccc
Confidence 45799999996533333333333 56778886 577 65
No 173
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=24.54 E-value=1.5e+02 Score=23.37 Aligned_cols=44 Identities=18% Similarity=0.228 Sum_probs=30.9
Q ss_pred EEEEEEcCCCCCcCeEEEEE-ecCCCcHHHHHHHHHhhcCCCCCCcEE
Q 040385 415 MTVTVFTSDGSALPSTYTVT-VPKHGRCRDLIQVLGNICSLKQSEELK 461 (827)
Q Consensus 415 ~~~~~~~~~~~~~p~~~~v~-~~k~~~~~~l~~~l~~~~~~~~~~~l~ 461 (827)
+.+.+-..+|... +.+. ++.+.++.+|++.++...|++....-+
T Consensus 3 m~i~Vk~~~g~~~---~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL 47 (78)
T 2faz_A 3 MWIQVRTMDGRQT---HTVDSLSRLTKVEELRRKIQELFHVEPGLQRL 47 (78)
T ss_dssp EEEEEEETTSSCE---EEEEEECTTCBHHHHHHHHHHHHCCCGGGEEE
T ss_pred EEEEEEECCCCEE---EEEeccCCCCCHHHHHHHHHHHHCcChhhEEE
Confidence 3444444555321 3677 889999999999999999997654433
No 174
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=24.30 E-value=1.4e+02 Score=25.90 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=32.6
Q ss_pred ceEEEEEEcCCCCCcCeEEEEEecCCCcHHHHHHHHHhhcCCCCCCc
Q 040385 413 RTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEE 459 (827)
Q Consensus 413 ~~~~~~~~~~~~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~ 459 (827)
..+.+++...+|. .+.+++....++.+|++.+....++++...
T Consensus 34 ~~m~I~Vk~~~G~----~~~l~v~~~~TV~~LK~~I~~~~gip~~~Q 76 (111)
T 3vdz_A 34 LAMQIFVKTLTGK----TITLEVEPSDTIENVKAKIQDKEGIPPDQQ 76 (111)
T ss_dssp GCEEEEEECSSSC----EEEEEECTTCBHHHHHHHHHHHHCCCGGGE
T ss_pred ccEEEEEEeCCCC----EEEEEeCCCCCHHHHHHHHHHHhCCChHHE
Confidence 3455666655553 367888999999999999999999976543
No 175
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=23.88 E-value=2.1e+02 Score=23.87 Aligned_cols=32 Identities=13% Similarity=0.075 Sum_probs=26.6
Q ss_pred EEEEEecCCCcHHHHHHHHHhhcCCCCCCcEE
Q 040385 430 TYTVTVPKHGRCRDLIQVLGNICSLKQSEELK 461 (827)
Q Consensus 430 ~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~ 461 (827)
.+.++++.+.++.+|++.++...|+++...-+
T Consensus 26 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL 57 (94)
T 2kan_A 26 QFTVEVDRTETVSSLKDKIHIVENTPIKRMQL 57 (94)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEE
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE
Confidence 46788999999999999999999997655443
No 176
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=23.48 E-value=2.5e+02 Score=24.07 Aligned_cols=39 Identities=15% Similarity=0.075 Sum_probs=30.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhcCCCCCCcEEEEEEeCCce
Q 040385 429 STYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSI 470 (827)
Q Consensus 429 ~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~ 470 (827)
.++.+.+..+.++.+|++.++...|++++..-++ |.+++
T Consensus 30 ~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI---~~GKi 68 (100)
T 1wju_A 30 RKNLLETRLHITGRELRSKIAETFGLQENYIKIV---INKKQ 68 (100)
T ss_dssp SSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEE---ETTEE
T ss_pred cEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEE---eCCeE
Confidence 4578889999999999999999999976544332 55553
No 177
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=23.38 E-value=2.8e+02 Score=22.03 Aligned_cols=67 Identities=13% Similarity=0.201 Sum_probs=41.1
Q ss_pred EEEEEEcCCCCCcCeEEEEEecCCCcHHHHHHHHHhh---cCCCCCCcEEEEEEeCCceEEeccCcccccc--ccCCCCc
Q 040385 415 MTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNI---CSLKQSEELKVAEIQNHSIQRFLDDPLISLS--TIKDDDH 489 (827)
Q Consensus 415 ~~~~~~~~~~~~~p~~~~v~~~k~~~~~~l~~~l~~~---~~~~~~~~l~~~e~~~~~~~~~~~d~~~~l~--~i~~~d~ 489 (827)
+.+++-..+|. .+.++++.+.++.+|++.++.. .|++....-+ +|.++ .++| ...|. .|.+++.
T Consensus 6 m~i~vk~~~g~----~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrL---i~~Gk---~L~D-~~tL~~~~i~~g~~ 74 (85)
T 2wyq_A 6 VTITLKTLQQQ----TFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKL---IYAGK---ILSD-DVPIRDYRIDEKNF 74 (85)
T ss_dssp EEEEEEETTSC----EEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEE---EETTE---ECCT-TSBGGGGCCCTTSE
T ss_pred EEEEEEECCCC----EEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEE---EECCE---ECcC-CCCHHHcCCCCCCE
Confidence 44555555443 3578889999999999999987 7776544333 24443 3444 23343 4556665
Q ss_pred EEE
Q 040385 490 LAA 492 (827)
Q Consensus 490 i~~ 492 (827)
|++
T Consensus 75 i~l 77 (85)
T 2wyq_A 75 VVV 77 (85)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 178
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=22.99 E-value=1.8e+02 Score=25.03 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=32.4
Q ss_pred eEEEEEEcCCCCCcCeEEEEEecCCCcHHHHHHHHHhhcCCCCCCcEE
Q 040385 414 TMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELK 461 (827)
Q Consensus 414 ~~~~~~~~~~~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~ 461 (827)
.+.+++-..++. .+.++++.+.++.+|++.+++..+++....-+
T Consensus 35 ~m~I~Vk~~~g~----~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL 78 (111)
T 2ojr_A 35 AMQIFVKTLTGK----TITLEVEPSDTIENVKAKIQDKEGIPPDQQRL 78 (111)
T ss_dssp CEEEEEECSSSC----EEEEEECTTCBHHHHHHHHHHHHCCCTTTEEE
T ss_pred eEEEEEEcCCCC----EEEEEeCCCCCHHHHHHHHHHHHCcCcccEEE
Confidence 455555555443 35788899999999999999999997655443
No 179
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=22.85 E-value=2.1e+02 Score=28.03 Aligned_cols=63 Identities=13% Similarity=0.121 Sum_probs=46.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhcCCCCCCcEEEEEEeCCceEEeccCcccccc--ccCCCCcEE
Q 040385 429 STYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLS--TIKDDDHLA 491 (827)
Q Consensus 429 ~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~d~~~~l~--~i~~~d~i~ 491 (827)
..+++.+++..++.+|.+.+.+.++++....+-+=.++...-+..+.|+...+. .+.+++.|.
T Consensus 140 ~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~il 204 (217)
T 4a3p_A 140 NVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLV 204 (217)
T ss_dssp EEEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEE
T ss_pred cceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEE
Confidence 446788999999999999999999998766677777665555667776655553 455555553
No 180
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.76 E-value=2.2e+02 Score=24.09 Aligned_cols=45 Identities=7% Similarity=0.031 Sum_probs=30.9
Q ss_pred EEEEEEcCCCCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeC
Q 040385 114 RLQLLVMPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYG 161 (827)
Q Consensus 114 ~l~~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~ 161 (827)
-++|+.+......-+.. .++++|+.++|..|.++...++|-.+.+
T Consensus 11 pfkV~~~~Rs~k~GV~A---~sL~EL~~K~~~~l~l~~~~~~lvLeeD 55 (91)
T 2eel_A 11 PFRVSNHDRSSRRGVMA---SSLQELISKTLDALVIATGLVTLVLEED 55 (91)
T ss_dssp EEEEECTTSCCCEEEEE---SSHHHHHHHHHHHTTCSSSCEEEEETTT
T ss_pred CEEEecCCCCeEEeEEc---CCHHHHHHHHHHHhcCCCCCcEEEEeeC
Confidence 35555333334444554 4799999999999999877788775543
No 181
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=22.72 E-value=70 Score=31.55 Aligned_cols=31 Identities=26% Similarity=0.429 Sum_probs=24.5
Q ss_pred EeecCCCcceEEEEEEeCCCCCEEEEeCCcceecC
Q 040385 777 NHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPIN 811 (827)
Q Consensus 777 ~H~G~~~~GHY~a~~k~~~~~~W~~fnD~~V~~~~ 811 (827)
+-.|+.++|||+.+.. ..+ +.+|=..+.+++
T Consensus 165 vF~G~~~~GHY~~~~~--~~~--~~vDG~~~~~~~ 195 (211)
T 3mp2_A 165 VYTGTTQNGHYMVDDI--EHG--YCVDGMGIKPLK 195 (211)
T ss_dssp EEESCTTTCEEEEEET--TTT--EEEETTEEECCC
T ss_pred EEEcCCCCceEEEEec--ccc--eEEeCCceeEcc
Confidence 3389999999999975 333 888888888776
No 182
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=22.28 E-value=3e+02 Score=22.17 Aligned_cols=45 Identities=22% Similarity=0.257 Sum_probs=32.6
Q ss_pred eEEEEEEcCCCCCcCeEEEE-EecCCCcHHHHHHHHHhhcCCCCCCcEE
Q 040385 414 TMTVTVFTSDGSALPSTYTV-TVPKHGRCRDLIQVLGNICSLKQSEELK 461 (827)
Q Consensus 414 ~~~~~~~~~~~~~~p~~~~v-~~~k~~~~~~l~~~l~~~~~~~~~~~l~ 461 (827)
.+.+++-..++. ..+.+ .++.+.++.+|++.++...+++....-+
T Consensus 7 ~m~i~Vk~~~g~---~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL 52 (89)
T 1wy8_A 7 GMWIQVRTIDGS---KTCTIEDVSRKATIEELRERVWALFDVRPECQRL 52 (89)
T ss_dssp CEEEEEEETTCS---CEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEE
T ss_pred cEEEEEEECCCC---ceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEE
Confidence 455555555552 23678 4899999999999999999997655443
No 183
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=22.27 E-value=74 Score=30.64 Aligned_cols=32 Identities=25% Similarity=0.318 Sum_probs=24.8
Q ss_pred EEEEEeec-CCCcceEEEEEEeCCCCCEEEEeC
Q 040385 773 YALTNHYG-GMGSGHYTAHIKLLDENRWYNFDD 804 (827)
Q Consensus 773 ~aVi~H~G-~~~~GHY~a~~k~~~~~~W~~fnD 804 (827)
.|+||--| ..+|=|+.|++-+|...+.|.||-
T Consensus 40 ~AIVNTg~retGGvHWiA~Aw~P~s~~~YmFDP 72 (204)
T 4ekf_A 40 CAIVNTAGRETGGVHWMAFAWNPRSKTCYLFEP 72 (204)
T ss_dssp EEEEESCC----CCCEEEEEEETTTTEEEEECT
T ss_pred eeEEecCCcccCceeEEEeEecCCcceEEEeCC
Confidence 57777666 567779999999999999999985
No 184
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=21.94 E-value=61 Score=27.76 Aligned_cols=31 Identities=6% Similarity=0.152 Sum_probs=25.4
Q ss_pred EEEEecCCCcHHHHHHHHHhhcCCCCCCcEE
Q 040385 431 YTVTVPKHGRCRDLIQVLGNICSLKQSEELK 461 (827)
Q Consensus 431 ~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~ 461 (827)
+.+++..+.++.+|++.+++..|++....-+
T Consensus 40 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL 70 (101)
T 3m63_B 40 WEVNVAPESTVLQFKEAINKANGIPVANQRL 70 (101)
T ss_dssp CCBCCCTTSBHHHHHHHHHHHHSCCSTTCCE
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCcChHHEEE
Confidence 4567888999999999999999998655443
No 185
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=21.54 E-value=4e+02 Score=26.93 Aligned_cols=77 Identities=8% Similarity=0.085 Sum_probs=48.8
Q ss_pred ceEEEEEEcCCCCeeEEEecccccHHHHHHHHHHHhCCCCc-cEEEEEeeCCccccccccccccccccccCCCCeEEEEE
Q 040385 112 PLRLQLLVMPRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEV 190 (827)
Q Consensus 112 P~~l~~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~-~~RlW~~~~~~~~~ll~~~~~tl~d~~l~~~q~il~E~ 190 (827)
|+.++|+.... ...+.+....|.++|.+.+|..++|... -+-||-.........| +.++.+.+.....+....+.+
T Consensus 1 ~i~~~V~l~d~--~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wL-d~~~~l~~q~~~~~~~~~l~f 77 (294)
T 1ef1_A 1 TISVRVTTMDA--ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWL-KLNKKVTAQDVRKESPLLFKF 77 (294)
T ss_dssp CEEEEEEETTE--EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEEC-CSSSBGGGSCBCCCSSEEEEE
T ss_pred CEEEEEEECCc--eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeec-ccccCHHhhccCCCCCEEEEE
Confidence 56677776533 4568999999999999999999999754 4566643322222233 345566554333344455555
Q ss_pred E
Q 040385 191 L 191 (827)
Q Consensus 191 ~ 191 (827)
+
T Consensus 78 r 78 (294)
T 1ef1_A 78 R 78 (294)
T ss_dssp E
T ss_pred E
Confidence 5
No 186
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=21.38 E-value=1.6e+02 Score=24.60 Aligned_cols=32 Identities=9% Similarity=0.088 Sum_probs=26.0
Q ss_pred EEEEEecCCCcHHHHHHHHHhhcCCCCCCcEE
Q 040385 430 TYTVTVPKHGRCRDLIQVLGNICSLKQSEELK 461 (827)
Q Consensus 430 ~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~ 461 (827)
.+.+.++.+.++.+|++.+++..++++...-+
T Consensus 12 ~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL 43 (98)
T 1yx5_B 12 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRL 43 (98)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHTCCCGGGEEE
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcChhhEEE
Confidence 35788899999999999999999997654333
No 187
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=21.06 E-value=97 Score=26.65 Aligned_cols=64 Identities=14% Similarity=0.206 Sum_probs=40.4
Q ss_pred eeEEEecccccHHHHHHHHHHH--hCCCCccEEE------EEeeCCccccc----cccccccccccccCCCCeEEE
Q 040385 125 CSTIRISKKETIGELHRRACSI--FYLNLEQICI------WDYYGHRKHAL----MNDMDRTLDDANIQMDQDILV 188 (827)
Q Consensus 125 ~~~~~~Sk~~ti~~l~~~~~~~--f~i~~~~~Rl------W~~~~~~~~~l----l~~~~~tl~d~~l~~~q~il~ 188 (827)
...+.++...|+++|++.+++. |.+..-.++- -..|.+....+ -.+.++++.++++.+|+.|.|
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~V 81 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAV 81 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEE
Confidence 3567889999999999999993 5544222211 11222221111 134577899999999988776
No 188
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=20.75 E-value=41 Score=33.18 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=22.0
Q ss_pred CCccCcccCCCccchhhHHHhhhCcHHH
Q 040385 273 VGLTGLLNLGNTCFMNSAIQCLVHTPEF 300 (827)
Q Consensus 273 ~g~~GL~NlGNTCYmNSvLQcL~~~~~l 300 (827)
.|..=|.=.-|.||+||++=.|-++..+
T Consensus 11 nG~~vLkq~dNNCwVNaa~l~LQ~~~~~ 38 (211)
T 3mp2_A 11 NGKIILKQGDNNCWINACCYQLQAFDFF 38 (211)
T ss_dssp TTEEEECCCTTCHHHHHHHHHHTTCTTC
T ss_pred CCEEEEEccCCCcHHHHHHHHHHhcChh
Confidence 3555566678999999998888777775
No 189
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=20.48 E-value=2.6e+02 Score=28.76 Aligned_cols=66 Identities=18% Similarity=0.247 Sum_probs=53.4
Q ss_pred ccceEEEEEEcCCCCCcCeEEEEEecCCCcHHHHHHHHHhhcCCCCCCcEEEEEEeCC-ceEEeccCcccc
Q 040385 411 TTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNH-SIQRFLDDPLIS 480 (827)
Q Consensus 411 ~~~~~~~~~~~~~~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~-~~~~~~~d~~~~ 480 (827)
......+.|+..|++ -..|.|+...+..||++.|....+........+.|++.+ .+-|.+.|....
T Consensus 28 ~~~k~ivkv~~~D~s----s~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V 94 (281)
T 4gmv_A 28 QVKKLVIRVHMSDDS----SKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENL 94 (281)
T ss_dssp SSCEEEEEEEETTSC----EEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBH
T ss_pred CcccEEEEEEecCCC----EEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhH
Confidence 345677888888885 458899999999999999988888888889999998866 588888865433
Done!