Query 040388
Match_columns 226
No_of_seqs 178 out of 1331
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 07:57:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040388.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040388hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.2 4.1E-11 8.8E-16 115.3 8.7 154 3-158 109-270 (968)
2 PLN03210 Resistant to P. syrin 99.1 3.3E-10 7.1E-15 110.7 11.8 55 123-178 778-834 (1153)
3 PLN03210 Resistant to P. syrin 99.1 1.7E-10 3.6E-15 112.7 8.7 118 58-178 778-902 (1153)
4 KOG4194 Membrane glycoprotein 99.1 1.2E-11 2.5E-16 108.9 -1.9 208 3-217 212-452 (873)
5 PLN00113 leucine-rich repeat r 99.1 3.8E-10 8.3E-15 108.6 8.0 65 3-68 156-222 (968)
6 KOG4341 F-box protein containi 98.9 5E-11 1.1E-15 101.2 -5.1 84 8-91 161-253 (483)
7 KOG4194 Membrane glycoprotein 98.8 1.4E-09 3.1E-14 96.0 -0.1 196 3-201 164-408 (873)
8 KOG4341 F-box protein containi 98.7 1.1E-09 2.4E-14 93.2 -1.7 164 35-198 270-465 (483)
9 cd00116 LRR_RI Leucine-rich re 98.7 3.1E-09 6.6E-14 89.4 -0.9 36 123-158 193-231 (319)
10 KOG2120 SCF ubiquitin ligase, 98.5 1.5E-08 3.3E-13 83.2 -0.2 165 12-178 186-372 (419)
11 KOG3207 Beta-tubulin folding c 98.4 2.8E-08 6.2E-13 85.1 -0.9 169 9-178 119-310 (505)
12 KOG0444 Cytoskeletal regulator 98.4 3.1E-08 6.7E-13 88.6 -1.5 150 3-157 95-254 (1255)
13 KOG3207 Beta-tubulin folding c 98.4 1.8E-07 3.8E-12 80.3 2.7 145 9-154 170-332 (505)
14 cd00116 LRR_RI Leucine-rich re 98.3 3.1E-07 6.8E-12 77.2 2.9 173 5-178 75-287 (319)
15 PRK15387 E3 ubiquitin-protein 98.3 2.7E-06 5.8E-11 79.6 8.2 58 2-68 215-272 (788)
16 KOG1947 Leucine rich repeat pr 98.2 1.6E-07 3.4E-12 83.2 -0.8 143 8-150 211-389 (482)
17 PF14580 LRR_9: Leucine-rich r 98.2 4.7E-07 1E-11 70.0 1.5 129 9-159 17-151 (175)
18 KOG1909 Ran GTPase-activating 98.2 4.9E-07 1.1E-11 75.6 0.4 149 10-158 29-223 (382)
19 KOG3665 ZYG-1-like serine/thre 98.1 1.2E-06 2.7E-11 81.1 1.5 146 11-158 122-285 (699)
20 PRK15387 E3 ubiquitin-protein 98.1 5.9E-06 1.3E-10 77.3 5.7 34 10-45 241-274 (788)
21 KOG1909 Ran GTPase-activating 98.0 1.4E-06 3.1E-11 72.9 -0.2 166 30-196 89-309 (382)
22 KOG2120 SCF ubiquitin ligase, 97.9 8.3E-07 1.8E-11 73.1 -1.9 163 33-195 185-373 (419)
23 PF14580 LRR_9: Leucine-rich r 97.9 6.8E-06 1.5E-10 63.6 3.1 82 9-91 40-124 (175)
24 PRK15370 E3 ubiquitin-protein 97.9 2.6E-05 5.7E-10 73.1 6.5 34 11-45 199-232 (754)
25 PRK15370 E3 ubiquitin-protein 97.9 8.9E-06 1.9E-10 76.2 3.3 142 3-158 214-377 (754)
26 KOG1947 Leucine rich repeat pr 97.8 8.2E-06 1.8E-10 72.2 1.9 128 31-158 186-331 (482)
27 KOG0444 Cytoskeletal regulator 97.8 5.9E-07 1.3E-11 80.6 -6.0 63 3-69 118-184 (1255)
28 KOG1259 Nischarin, modulator o 97.8 2.8E-06 6E-11 70.3 -1.7 124 32-159 283-410 (490)
29 KOG0618 Serine/threonine phosp 97.7 1.6E-06 3.5E-11 80.6 -3.8 43 3-45 279-322 (1081)
30 KOG3665 ZYG-1-like serine/thre 97.6 1.5E-05 3.2E-10 74.1 0.5 159 34-197 61-262 (699)
31 KOG1859 Leucine-rich repeat pr 97.5 3.5E-06 7.5E-11 76.8 -4.8 100 58-157 187-288 (1096)
32 PF13855 LRR_8: Leucine rich r 97.5 0.0001 2.3E-09 46.6 3.2 57 11-68 1-59 (61)
33 KOG0618 Serine/threonine phosp 97.5 4.7E-06 1E-10 77.6 -4.8 65 2-68 255-320 (1081)
34 PF07723 LRR_2: Leucine Rich R 97.4 0.00016 3.4E-09 37.6 2.7 25 34-58 1-26 (26)
35 KOG0472 Leucine-rich repeat pr 97.4 1E-06 2.2E-11 75.2 -9.3 132 3-137 152-289 (565)
36 KOG0617 Ras suppressor protein 97.3 9.8E-06 2.1E-10 62.0 -4.5 147 6-157 28-182 (264)
37 PF13855 LRR_8: Leucine rich r 97.2 0.00039 8.5E-09 43.8 2.9 41 118-159 20-60 (61)
38 KOG0472 Leucine-rich repeat pr 97.0 1.6E-06 3.4E-11 74.2 -11.9 65 2-68 82-147 (565)
39 COG4886 Leucine-rich repeat (L 96.8 0.00097 2.1E-08 58.0 3.0 80 9-90 114-196 (394)
40 PRK15386 type III secretion pr 96.8 0.0034 7.3E-08 54.8 6.1 134 9-157 50-186 (426)
41 PF12799 LRR_4: Leucine Rich r 96.7 0.0016 3.5E-08 38.3 2.6 35 11-45 1-36 (44)
42 KOG2982 Uncharacterized conser 96.6 0.0017 3.7E-08 54.0 2.9 151 9-161 95-262 (418)
43 PF12799 LRR_4: Leucine Rich r 96.4 0.0043 9.3E-08 36.5 3.0 34 123-158 1-34 (44)
44 COG5238 RNA1 Ran GTPase-activa 96.2 0.0093 2E-07 49.1 5.2 185 10-195 29-282 (388)
45 PRK15386 type III secretion pr 96.2 0.016 3.5E-07 50.7 6.9 133 32-178 51-186 (426)
46 KOG3864 Uncharacterized conser 96.1 0.0012 2.5E-08 51.8 -0.7 77 12-88 102-184 (221)
47 KOG4237 Extracellular matrix p 96.0 0.00048 1E-08 59.1 -3.2 55 12-70 68-127 (498)
48 PLN03150 hypothetical protein; 95.9 0.011 2.3E-07 54.9 4.9 39 119-158 462-500 (623)
49 KOG0617 Ras suppressor protein 95.9 0.0005 1.1E-08 52.8 -3.2 133 2-137 47-187 (264)
50 KOG2982 Uncharacterized conser 95.8 0.0043 9.4E-08 51.7 1.6 151 6-159 40-210 (418)
51 KOG2739 Leucine-rich acidic nu 95.8 0.0037 8.1E-08 50.7 1.1 98 10-107 42-149 (260)
52 KOG2739 Leucine-rich acidic nu 95.8 0.0031 6.7E-08 51.2 0.5 103 57-159 42-154 (260)
53 KOG1259 Nischarin, modulator o 95.7 0.0097 2.1E-07 49.7 3.3 60 48-107 172-243 (490)
54 COG5238 RNA1 Ran GTPase-activa 95.7 0.0059 1.3E-07 50.3 1.9 128 30-158 89-252 (388)
55 PLN03150 hypothetical protein; 95.7 0.0088 1.9E-07 55.5 3.2 79 12-91 419-501 (623)
56 COG4886 Leucine-rich repeat (L 95.7 0.0061 1.3E-07 53.0 2.1 150 2-157 130-286 (394)
57 KOG1644 U2-associated snRNP A' 95.4 0.044 9.5E-07 43.2 5.6 76 118-195 59-150 (233)
58 KOG1644 U2-associated snRNP A' 95.3 0.047 1E-06 43.1 5.4 96 12-110 43-149 (233)
59 KOG4658 Apoptotic ATPase [Sign 94.8 0.031 6.6E-07 53.8 3.9 80 11-90 523-605 (889)
60 KOG2123 Uncharacterized conser 94.6 0.0021 4.6E-08 53.0 -3.7 78 11-91 19-99 (388)
61 KOG4658 Apoptotic ATPase [Sign 94.6 0.0039 8.4E-08 59.8 -2.7 83 4-90 563-652 (889)
62 KOG0532 Leucine-rich repeat (L 94.1 0.0027 5.9E-08 57.0 -4.4 130 2-137 112-248 (722)
63 KOG0531 Protein phosphatase 1, 93.6 0.016 3.5E-07 51.0 -0.6 58 31-90 93-150 (414)
64 smart00367 LRR_CC Leucine-rich 92.6 0.12 2.6E-06 26.4 2.1 23 32-54 1-24 (26)
65 PF13516 LRR_6: Leucine Rich r 91.6 0.17 3.6E-06 25.3 1.9 22 32-53 1-22 (24)
66 KOG3864 Uncharacterized conser 90.9 0.057 1.2E-06 42.5 -0.4 60 119-178 121-185 (221)
67 KOG0531 Protein phosphatase 1, 90.8 0.1 2.2E-06 46.0 0.9 81 7-91 91-173 (414)
68 PF13306 LRR_5: Leucine rich r 90.3 0.13 2.7E-06 37.0 0.9 82 3-88 3-89 (129)
69 KOG1859 Leucine-rich repeat pr 89.0 0.024 5.3E-07 52.6 -4.4 55 32-90 186-242 (1096)
70 KOG2123 Uncharacterized conser 89.0 0.015 3.3E-07 48.1 -5.2 77 10-87 40-124 (388)
71 KOG0532 Leucine-rich repeat (L 88.9 0.03 6.5E-07 50.5 -3.7 46 120-169 186-231 (722)
72 PF13504 LRR_7: Leucine rich r 85.6 0.67 1.4E-05 21.1 1.5 13 12-24 2-14 (17)
73 PF00560 LRR_1: Leucine Rich R 83.4 1 2.2E-05 21.9 1.7 14 12-25 1-14 (22)
74 PF13306 LRR_5: Leucine rich r 83.1 1.3 2.7E-05 31.6 2.8 12 55-66 9-20 (129)
75 smart00368 LRR_RI Leucine rich 82.8 1.6 3.4E-05 22.7 2.4 22 33-54 2-23 (28)
76 KOG4237 Extracellular matrix p 73.2 1.5 3.2E-05 38.3 0.8 46 118-164 86-131 (498)
77 smart00369 LRR_TYP Leucine-ric 52.8 11 0.00024 18.7 1.5 15 123-137 2-16 (26)
78 smart00370 LRR Leucine-rich re 52.8 11 0.00024 18.7 1.5 15 123-137 2-16 (26)
79 KOG3763 mRNA export factor TAP 52.3 5.3 0.00012 36.3 0.3 39 51-90 211-254 (585)
80 KOG4579 Leucine-rich repeat (L 52.2 3.5 7.6E-05 30.9 -0.7 78 12-91 28-111 (177)
81 KOG3763 mRNA export factor TAP 42.2 23 0.00049 32.4 2.7 60 31-91 216-281 (585)
82 smart00365 LRR_SD22 Leucine-ri 35.0 30 0.00064 17.6 1.4 14 123-136 2-15 (26)
83 PF08387 FBD: FBD; InterPro: 33.5 22 0.00048 21.2 0.9 15 198-212 35-50 (51)
84 KOG1665 AFH1-interacting prote 33.3 42 0.00092 27.1 2.6 12 56-67 169-180 (302)
85 smart00579 FBD domain in FBox 29.4 36 0.00079 21.5 1.5 18 198-215 26-44 (72)
86 smart00364 LRR_BAC Leucine-ric 20.5 57 0.0012 16.7 0.9 15 123-137 2-16 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.20 E-value=4.1e-11 Score=115.25 Aligned_cols=154 Identities=16% Similarity=0.123 Sum_probs=70.7
Q ss_pred CCcccc-ccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE--ecCCC
Q 040388 3 LPQVAF-NAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL--ELPDL 79 (226)
Q Consensus 3 lP~~~~-~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l--~i~~~ 79 (226)
+|..++ .+++|++|+|++|.+........+++|++|+|++|.++.. +..-+.++++|+.|++++|.-...+ .+..+
T Consensus 109 ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 187 (968)
T PLN00113 109 IPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGE-IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL 187 (968)
T ss_pred CChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCccccc-CChHHhcCCCCCEEECccCcccccCChhhhhC
Confidence 455555 5566666666666553111122456666666666655322 2223456667777777666321111 23345
Q ss_pred CCcceEEeccCCCce---EEEEecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEe
Q 040388 80 NNLKEFKAYDNFRLQ---RLHINGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLH 154 (226)
Q Consensus 80 ~~Lk~L~l~~c~~l~---~~~~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~ 154 (226)
++|++|++++|.... ......++|++|++.+. ....+..+..+++|++|++++|.++...+.. +..+++|+.|+
T Consensus 188 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~ 266 (968)
T PLN00113 188 TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLF 266 (968)
T ss_pred cCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEE
Confidence 566666666553111 11112345555553221 1111122344455555555555544332222 23445555555
Q ss_pred cccc
Q 040388 155 IDCC 158 (226)
Q Consensus 155 l~~C 158 (226)
+.+|
T Consensus 267 L~~n 270 (968)
T PLN00113 267 LYQN 270 (968)
T ss_pred CcCC
Confidence 5443
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.14 E-value=3.3e-10 Score=110.67 Aligned_cols=55 Identities=31% Similarity=0.454 Sum_probs=33.0
Q ss_pred ccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccceeeccC--ccccceeEEcc
Q 040388 123 KHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAKIS--SRCLKKLFFKG 178 (226)
Q Consensus 123 ~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~i~--~~~L~~L~l~~ 178 (226)
++|+.|++++|......+.. +.++++|+.|++.+|..++.++.. ..+|+.|++.+
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~s-i~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~ 834 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSS-IQNLHKLEHLEIENCINLETLPTGINLESLESLDLSG 834 (1153)
T ss_pred ccchheeCCCCCCccccChh-hhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCC
Confidence 46666777666543333333 467788888888888776665422 24556666554
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.12 E-value=1.7e-10 Score=112.72 Aligned_cols=118 Identities=20% Similarity=0.280 Sum_probs=77.0
Q ss_pred CccceeeeeccCCceEE--ecCCCCCcceEEeccCCCceEEEE--ecceeeEEEeCCCCccccccccCcccCcEEEeecc
Q 040388 58 PLIEYMHVFDCGGLKCL--ELPDLNNLKEFKAYDNFRLQRLHI--NGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGL 133 (226)
Q Consensus 58 p~Le~L~l~~c~~l~~l--~i~~~~~Lk~L~l~~c~~l~~~~~--~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~ 133 (226)
|+|++|++++|..+..+ .++++++|+.|++++|..++.+.. +.++|++|++.++.... .......+|++|+++++
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~-~~p~~~~nL~~L~Ls~n 856 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLR-TFPDISTNISDLNLSRT 856 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccc-cccccccccCEeECCCC
Confidence 45666666665544433 245577888888888876665532 46778888866542111 11123468899999998
Q ss_pred ccCchhHHHHHhcCCCCcEEeccccccceeeccCcc---ccceeEEcc
Q 040388 134 YIIDECPSNQVSKLQFLEYLHIDCCMKLRSAKISSR---CLKKLFFKG 178 (226)
Q Consensus 134 ~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~i~~~---~L~~L~l~~ 178 (226)
.++.- ..-+..+++|+.|++.+|+.++.+..... +|+.+.+.+
T Consensus 857 ~i~~i--P~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~ 902 (1153)
T PLN03210 857 GIEEV--PWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSD 902 (1153)
T ss_pred CCccC--hHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCC
Confidence 88752 33357899999999999999998876543 455555543
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.06 E-value=1.2e-11 Score=108.95 Aligned_cols=208 Identities=22% Similarity=0.251 Sum_probs=101.8
Q ss_pred CCccccc-cCCccEEEecccccccc--cCccCCCcccEEEecceec---CHHHHHHHHhcCCccceeeeeccCCceEE--
Q 040388 3 LPQVAFN-AESIVVLELQFCKLESL--RNNVTLSSLRKLCSSHVYE---DDQVIEDFVAGCPLIEYMHVFDCGGLKCL-- 74 (226)
Q Consensus 3 lP~~~~~-~~sL~~L~L~~c~~~~~--~~~~~l~sLk~L~L~~~~~---~~~~l~~l~~~cp~Le~L~l~~c~~l~~l-- 74 (226)
||...|. ++.|+.|+|.+|.+... -.+.+++|||.|.|..+.+ +|. .+.+|.++|+|++..+. +..+
T Consensus 212 Lp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG----~Fy~l~kme~l~L~~N~-l~~vn~ 286 (873)
T KOG4194|consen 212 LPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDG----AFYGLEKMEHLNLETNR-LQAVNE 286 (873)
T ss_pred cCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCc----ceeeecccceeecccch-hhhhhc
Confidence 4444443 45555555555544321 1223455555555555543 222 14455556666555542 1111
Q ss_pred -ecCCCCCcceEEeccCCCceEEEEe----cceeeEEEeCC-C-CccccccccCcccCcEEEeeccccCchhHHHHHhcC
Q 040388 75 -ELPDLNNLKEFKAYDNFRLQRLHIN----GVNVCSIDLAS-R-RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKL 147 (226)
Q Consensus 75 -~i~~~~~Lk~L~l~~c~~l~~~~~~----~~~L~~L~~~~-~-~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~ 147 (226)
-+-|+.+|+.|+++.+ .++.++++ +++|+.|++.. . .....-.+..+..|++|+|++|.++.-. +..+.+.
T Consensus 287 g~lfgLt~L~~L~lS~N-aI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~-e~af~~l 364 (873)
T KOG4194|consen 287 GWLFGLTSLEQLDLSYN-AIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLA-EGAFVGL 364 (873)
T ss_pred ccccccchhhhhccchh-hhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHH-hhHHHHh
Confidence 1234566777777766 45555553 46777777332 1 1111112344556666666666654321 2233455
Q ss_pred CCCcEEeccccccceeec-----cC-ccccceeEEcc-e-------EEEeCCCcceEEEeecceeecc----ccccceee
Q 040388 148 QFLEYLHIDCCMKLRSAK-----IS-SRCLKKLFFKG-E-------FMLDTSNLSTFEYQGNLVSFSS----NALALSQI 209 (226)
Q Consensus 148 ~~Le~L~l~~C~~L~~l~-----i~-~~~L~~L~l~~-~-------~~i~~p~L~sl~~~g~~~~~~~----~~~~l~~~ 209 (226)
.+|+.|++....---.++ +. -+.|++|.+.| + .....++||.+...++....+. .+++||++
T Consensus 365 ssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~L 444 (873)
T KOG4194|consen 365 SSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKEL 444 (873)
T ss_pred hhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhh
Confidence 666666665532111111 11 13456666655 1 2344567777777666543333 34577777
Q ss_pred eEeeecce
Q 040388 210 ILFLSTVI 217 (226)
Q Consensus 210 ~~~~~~~~ 217 (226)
.+...+|+
T Consensus 445 v~nSssfl 452 (873)
T KOG4194|consen 445 VMNSSSFL 452 (873)
T ss_pred hhcccceE
Confidence 77665553
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.06 E-value=3.8e-10 Score=108.58 Aligned_cols=65 Identities=17% Similarity=0.064 Sum_probs=35.3
Q ss_pred CCccccccCCccEEEecccccc-ccc-CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeecc
Q 040388 3 LPQVAFNAESIVVLELQFCKLE-SLR-NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDC 68 (226)
Q Consensus 3 lP~~~~~~~sL~~L~L~~c~~~-~~~-~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 68 (226)
+|..+..+++|++|++++|.+. ..+ ...++++|++|+|++|.++... ..-+..+++|+.|++++|
T Consensus 156 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n 222 (968)
T PLN00113 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI-PRELGQMKSLKWIYLGYN 222 (968)
T ss_pred CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcC-ChHHcCcCCccEEECcCC
Confidence 4566666777777777776653 112 2235666666666666543221 122344555555555554
No 6
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.87 E-value=5e-11 Score=101.18 Aligned_cols=84 Identities=19% Similarity=0.224 Sum_probs=53.7
Q ss_pred cccCCccEEEeccccccc----ccCccCCCcccEEEecceec-CHHHHHHHHhcCCccceeeeeccCCceE----EecCC
Q 040388 8 FNAESIVVLELQFCKLES----LRNNVTLSSLRKLCSSHVYE-DDQVIEDFVAGCPLIEYMHVFDCGGLKC----LELPD 78 (226)
Q Consensus 8 ~~~~sL~~L~L~~c~~~~----~~~~~~l~sLk~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~l~~----l~i~~ 78 (226)
-+|+++++|.+++|.... ......++.|+.|+|..|.. ++..++.+..+||+|++|.++.|+.+.. -...|
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 357788888888887321 12234578888888888654 7888888888888888888888865432 11234
Q ss_pred CCCcceEEeccCC
Q 040388 79 LNNLKEFKAYDNF 91 (226)
Q Consensus 79 ~~~Lk~L~l~~c~ 91 (226)
|..++.+...+|.
T Consensus 241 ~~~l~~~~~kGC~ 253 (483)
T KOG4341|consen 241 CKELEKLSLKGCL 253 (483)
T ss_pred chhhhhhhhcccc
Confidence 4445555444443
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.75 E-value=1.4e-09 Score=96.04 Aligned_cols=196 Identities=19% Similarity=0.165 Sum_probs=117.8
Q ss_pred CCcccccc-CCccEEEecccccccc--cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccC--CceEEecC
Q 040388 3 LPQVAFNA-ESIVVLELQFCKLESL--RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCG--GLKCLELP 77 (226)
Q Consensus 3 lP~~~~~~-~sL~~L~L~~c~~~~~--~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~--~l~~l~i~ 77 (226)
+|..-|.. ..+++|+|++|.+... ..+..+.+|..|-|+.++++. .-...+...|.||.|++..+. -.+.+.+.
T Consensus 164 i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt-Lp~r~Fk~L~~L~~LdLnrN~irive~ltFq 242 (873)
T KOG4194|consen 164 IPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT-LPQRSFKRLPKLESLDLNRNRIRIVEGLTFQ 242 (873)
T ss_pred ccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc-cCHHHhhhcchhhhhhccccceeeehhhhhc
Confidence 44444544 5899999999987632 223457789999999988732 123345567899999998763 23455667
Q ss_pred CCCCcceEEeccCC--Cce-EEEEecceeeEEEeC------------------------C--CCccccccccCcccCcEE
Q 040388 78 DLNNLKEFKAYDNF--RLQ-RLHINGVNVCSIDLA------------------------S--RRTLSDINVAPCKHLEKL 128 (226)
Q Consensus 78 ~~~~Lk~L~l~~c~--~l~-~~~~~~~~L~~L~~~------------------------~--~~~~~~~~~~~~~~L~~L 128 (226)
|+++|+.+.+..+. .++ .+.-.+.+++.+++. . ....-...+..|++|++|
T Consensus 243 gL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~L 322 (873)
T KOG4194|consen 243 GLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKEL 322 (873)
T ss_pred CchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeE
Confidence 77888887777664 222 112223344444421 0 000011235567777777
Q ss_pred EeeccccCchhHHHHHhcCCCCcEEeccccccceeec---cCc-cccceeEEcc-eEE----------EeCCCcceEEEe
Q 040388 129 KLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAK---ISS-RCLKKLFFKG-EFM----------LDTSNLSTFEYQ 193 (226)
Q Consensus 129 ~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~---i~~-~~L~~L~l~~-~~~----------i~~p~L~sl~~~ 193 (226)
+|++|.|+.--... +..+..||.|.+++ ..+.++. +-+ .+|++|+++. ++. -.-|.|.++.++
T Consensus 323 dLs~N~i~~l~~~s-f~~L~~Le~LnLs~-Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~ 400 (873)
T KOG4194|consen 323 DLSSNRITRLDEGS-FRVLSQLEELNLSH-NSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLT 400 (873)
T ss_pred eccccccccCChhH-HHHHHHhhhhcccc-cchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeec
Confidence 77777776543222 34556777777776 3334332 211 4677777775 322 124899999999
Q ss_pred ecceeecc
Q 040388 194 GNLVSFSS 201 (226)
Q Consensus 194 g~~~~~~~ 201 (226)
|++++.+.
T Consensus 401 gNqlk~I~ 408 (873)
T KOG4194|consen 401 GNQLKSIP 408 (873)
T ss_pred Cceeeecc
Confidence 99887766
No 8
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.72 E-value=1.1e-09 Score=93.16 Aligned_cols=164 Identities=20% Similarity=0.231 Sum_probs=107.3
Q ss_pred ccEEEecceec-CHHHHHHHHhcCCccceeeeeccCCceEEe----cCCCCCcceEEeccCCCc-----eEEEEecceee
Q 040388 35 LRKLCSSHVYE-DDQVIEDFVAGCPLIEYMHVFDCGGLKCLE----LPDLNNLKEFKAYDNFRL-----QRLHINGVNVC 104 (226)
Q Consensus 35 Lk~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~----i~~~~~Lk~L~l~~c~~l-----~~~~~~~~~L~ 104 (226)
+.++++.+|.. +|..+..+..+|..|+.|+.++|.++.... ..+|++|+.+.+++|..+ +.+..+++.|+
T Consensus 270 i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le 349 (483)
T KOG4341|consen 270 ILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLE 349 (483)
T ss_pred hhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhh
Confidence 33444444443 555555555566666666666665533221 135789999999999844 44556789999
Q ss_pred EEEeCCCCcc----ccccccCcccCcEEEeeccc-cCchhHHHH---HhcCCCCcEEeccccccceeec----cCccccc
Q 040388 105 SIDLASRRTL----SDINVAPCKHLEKLKLSGLY-IIDECPSNQ---VSKLQFLEYLHIDCCMKLRSAK----ISSRCLK 172 (226)
Q Consensus 105 ~L~~~~~~~~----~~~~~~~~~~L~~L~L~~~~-it~~~~~~l---~~~~~~Le~L~l~~C~~L~~l~----i~~~~L~ 172 (226)
.++..+.... ..--..+|+.|+.+.+++|. ||++....+ ..+...|+.+.+.+|+.+..-. -.+++||
T Consensus 350 ~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Le 429 (483)
T KOG4341|consen 350 RLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLE 429 (483)
T ss_pred hhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccc
Confidence 9986554111 11123689999999999996 777754433 2345678999999998765432 2356899
Q ss_pred eeEEcc----------eEEEeCCCcceEEEeeccee
Q 040388 173 KLFFKG----------EFMLDTSNLSTFEYQGNLVS 198 (226)
Q Consensus 173 ~L~l~~----------~~~i~~p~L~sl~~~g~~~~ 198 (226)
++++.+ .+.-+.||++...|.+...|
T Consensus 430 ri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a~~t~ 465 (483)
T KOG4341|consen 430 RIELIDCQDVTKEAISRFATHLPNIKVHAYFAPVTP 465 (483)
T ss_pred eeeeechhhhhhhhhHHHHhhCccceehhhccCCCC
Confidence 998876 13467899999999887543
No 9
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.66 E-value=3.1e-09 Score=89.39 Aligned_cols=36 Identities=31% Similarity=0.319 Sum_probs=18.4
Q ss_pred ccCcEEEeeccccCchhHH---HHHhcCCCCcEEecccc
Q 040388 123 KHLEKLKLSGLYIIDECPS---NQVSKLQFLEYLHIDCC 158 (226)
Q Consensus 123 ~~L~~L~L~~~~it~~~~~---~l~~~~~~Le~L~l~~C 158 (226)
++|++|++++|.+++.... ..+..+++|+.|++++|
T Consensus 193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n 231 (319)
T cd00116 193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN 231 (319)
T ss_pred CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC
Confidence 4566666666555443222 22344555666666554
No 10
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=1.5e-08 Score=83.20 Aligned_cols=165 Identities=19% Similarity=0.260 Sum_probs=107.3
Q ss_pred CccEEEeccccccc--c-cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe----cCCCCCcce
Q 040388 12 SIVVLELQFCKLES--L-RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE----LPDLNNLKE 84 (226)
Q Consensus 12 sL~~L~L~~c~~~~--~-~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~----i~~~~~Lk~ 84 (226)
.|++|+|++-.+.. . .....|..||.|+|.+..++|.....+ +.-.+|+.|+++.|.++..-. +++|..|..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i-AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI-AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHH-hccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 47778887655541 1 112357788888888887766655554 444678888888887765432 356778888
Q ss_pred EEeccCCCceE---EEE--ecceeeEEEeCCCCcc-----ccccccCcccCcEEEeeccc-cCchhHHHHHhcCCCCcEE
Q 040388 85 FKAYDNFRLQR---LHI--NGVNVCSIDLASRRTL-----SDINVAPCKHLEKLKLSGLY-IIDECPSNQVSKLQFLEYL 153 (226)
Q Consensus 85 L~l~~c~~l~~---~~~--~~~~L~~L~~~~~~~~-----~~~~~~~~~~L~~L~L~~~~-it~~~~~~l~~~~~~Le~L 153 (226)
|+++-|...++ +.+ -.++|..|++.|+... ...-...|++|.+|+++.+. ++++.+..+ -.|+.|++|
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~-~kf~~L~~l 343 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FKFNYLQHL 343 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHH-Hhcchheee
Confidence 88877752221 111 2466777776664111 12234689999999999875 677665554 579999999
Q ss_pred eccccccc---eeeccC-ccccceeEEcc
Q 040388 154 HIDCCMKL---RSAKIS-SRCLKKLFFKG 178 (226)
Q Consensus 154 ~l~~C~~L---~~l~i~-~~~L~~L~l~~ 178 (226)
.++.|-.+ +.+++. -+.|.+|++.|
T Consensus 344 SlsRCY~i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 344 SLSRCYDIIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred ehhhhcCCChHHeeeeccCcceEEEEecc
Confidence 99999654 234443 36788888876
No 11
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=2.8e-08 Score=85.09 Aligned_cols=169 Identities=16% Similarity=0.084 Sum_probs=114.1
Q ss_pred ccCCccEEEeccccccccc---CccCCCcccEEEecceec-CHHHHHHHHhcCCccceeeeeccCCc---eEEecCCCCC
Q 040388 9 NAESIVVLELQFCKLESLR---NNVTLSSLRKLCSSHVYE-DDQVIEDFVAGCPLIEYMHVFDCGGL---KCLELPDLNN 81 (226)
Q Consensus 9 ~~~sL~~L~L~~c~~~~~~---~~~~l~sLk~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~l---~~l~i~~~~~ 81 (226)
+.++|++..|..|.+.... ....||..+.|+|+++-+ .=..+..++...|+||.|.++.+.-. ....-..++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 4567888899998876432 344699999999999887 45667888999999999999987421 1111113588
Q ss_pred cceEEeccCC----CceEEEEecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEec
Q 040388 82 LKEFKAYDNF----RLQRLHINGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHI 155 (226)
Q Consensus 82 Lk~L~l~~c~----~l~~~~~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l 155 (226)
||.|.++.|. .+..+...+|+|+.|...+. ........+.+..|+.|+|++|++-+..--.....+|.|+.|.+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 9999999995 23444556899999884322 11112233456789999999988644322244578899999988
Q ss_pred cccccceeecc----------CccccceeEEcc
Q 040388 156 DCCMKLRSAKI----------SSRCLKKLFFKG 178 (226)
Q Consensus 156 ~~C~~L~~l~i----------~~~~L~~L~l~~ 178 (226)
..| .+..+.+ ..++|++|++..
T Consensus 279 s~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~ 310 (505)
T KOG3207|consen 279 SST-GIASIAEPDVESLDKTHTFPKLEYLNISE 310 (505)
T ss_pred ccc-CcchhcCCCccchhhhcccccceeeeccc
Confidence 875 2222222 235788888765
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.40 E-value=3.1e-08 Score=88.65 Aligned_cols=150 Identities=15% Similarity=0.173 Sum_probs=84.8
Q ss_pred CCccccccCCccEEEeccccccccc-CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE--ecCCC
Q 040388 3 LPQVAFNAESIVVLELQFCKLESLR-NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL--ELPDL 79 (226)
Q Consensus 3 lP~~~~~~~sL~~L~L~~c~~~~~~-~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l--~i~~~ 79 (226)
+|..+|..+.|++|+|++|.+...+ ....-+++-.|+|+++.+ ++....+..+..-|-.||++++ .++.+ .+..+
T Consensus 95 iP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~I-etIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL 172 (1255)
T KOG0444|consen 95 IPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNI-ETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRL 172 (1255)
T ss_pred CCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcc-ccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHH
Confidence 7899999999999999999887433 333567888999999876 1112223333344666777765 23322 22334
Q ss_pred CCcceEEeccCCCceEEEE-ecceee---EEEeCCC---CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcE
Q 040388 80 NNLKEFKAYDNFRLQRLHI-NGVNVC---SIDLASR---RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEY 152 (226)
Q Consensus 80 ~~Lk~L~l~~c~~l~~~~~-~~~~L~---~L~~~~~---~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~ 152 (226)
..|++|+++++. +..+++ ..|+++ .|.+.+. ....+..+..+.||..++++.|+++. +.+-.-..++|++
T Consensus 173 ~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~--vPecly~l~~Lrr 249 (1255)
T KOG0444|consen 173 SMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI--VPECLYKLRNLRR 249 (1255)
T ss_pred hhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc--chHHHhhhhhhhe
Confidence 567777887774 111111 233333 3333332 11123344555666666666666543 1222344566666
Q ss_pred Eeccc
Q 040388 153 LHIDC 157 (226)
Q Consensus 153 L~l~~ 157 (226)
|++++
T Consensus 250 LNLS~ 254 (1255)
T KOG0444|consen 250 LNLSG 254 (1255)
T ss_pred eccCc
Confidence 66665
No 13
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=1.8e-07 Score=80.34 Aligned_cols=145 Identities=17% Similarity=0.146 Sum_probs=93.0
Q ss_pred ccCCccEEEeccccccccc---CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCce--EEecCCCCCcc
Q 040388 9 NAESIVVLELQFCKLESLR---NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLK--CLELPDLNNLK 83 (226)
Q Consensus 9 ~~~sL~~L~L~~c~~~~~~---~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~--~l~i~~~~~Lk 83 (226)
.+++|+.|+|+.|.+..+. ....++.||.|.|++|.++...+..++..||.|+.|.+..+.++- ...-.....|+
T Consensus 170 qLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~ 249 (505)
T KOG3207|consen 170 QLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQ 249 (505)
T ss_pred hcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHh
Confidence 3678999999998876321 223689999999999999988999999999999999999985421 11111236788
Q ss_pred eEEeccCCCce--E--EEEecceeeEEEe--CCCCcc--ccc----cccCcccCcEEEeeccccCc-hhHHHHHhcCCCC
Q 040388 84 EFKAYDNFRLQ--R--LHINGVNVCSIDL--ASRRTL--SDI----NVAPCKHLEKLKLSGLYIID-ECPSNQVSKLQFL 150 (226)
Q Consensus 84 ~L~l~~c~~l~--~--~~~~~~~L~~L~~--~~~~~~--~~~----~~~~~~~L~~L~L~~~~it~-~~~~~l~~~~~~L 150 (226)
.|+++++..+. + .....|.|+-+.. +|.... .+. ....+++|++|++..|+|.+ ..+.++ ...++|
T Consensus 250 ~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l-~~l~nl 328 (505)
T KOG3207|consen 250 ELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHL-RTLENL 328 (505)
T ss_pred hccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchh-hccchh
Confidence 88888886322 1 2224566666662 232111 111 12456788999998888743 222222 334555
Q ss_pred cEEe
Q 040388 151 EYLH 154 (226)
Q Consensus 151 e~L~ 154 (226)
..|.
T Consensus 329 k~l~ 332 (505)
T KOG3207|consen 329 KHLR 332 (505)
T ss_pred hhhh
Confidence 5554
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.32 E-value=3.1e-07 Score=77.15 Aligned_cols=173 Identities=21% Similarity=0.133 Sum_probs=111.8
Q ss_pred ccccccCCccEEEeccccccc--ccCccCC---CcccEEEecceecCHHHHHH---HHhcC-CccceeeeeccCCc----
Q 040388 5 QVAFNAESIVVLELQFCKLES--LRNNVTL---SSLRKLCSSHVYEDDQVIED---FVAGC-PLIEYMHVFDCGGL---- 71 (226)
Q Consensus 5 ~~~~~~~sL~~L~L~~c~~~~--~~~~~~l---~sLk~L~L~~~~~~~~~l~~---l~~~c-p~Le~L~l~~c~~l---- 71 (226)
..+..+++|++|++++|.+.. ......+ ++|+.|++++|.+++..... .+..+ ++|++|++++|.--
T Consensus 75 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 154 (319)
T cd00116 75 QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC 154 (319)
T ss_pred HHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence 445567899999999998751 1111122 55999999999986555443 34455 89999999998521
Q ss_pred eEE--ecCCCCCcceEEeccCCCce-----EEE---EecceeeEEEeCCCCc-c-----ccccccCcccCcEEEeecccc
Q 040388 72 KCL--ELPDLNNLKEFKAYDNFRLQ-----RLH---INGVNVCSIDLASRRT-L-----SDINVAPCKHLEKLKLSGLYI 135 (226)
Q Consensus 72 ~~l--~i~~~~~Lk~L~l~~c~~l~-----~~~---~~~~~L~~L~~~~~~~-~-----~~~~~~~~~~L~~L~L~~~~i 135 (226)
..+ .+.++++|++|++++|. +. .+. ...++|++|++.+... . ....+..+++|++|++++|.+
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l 233 (319)
T cd00116 155 EALAKALRANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL 233 (319)
T ss_pred HHHHHHHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC
Confidence 111 23456789999999885 22 111 1336899999654311 0 112345778999999999999
Q ss_pred CchhHHHHHhcC----CCCcEEeccccccc----eeec---cCccccceeEEcc
Q 040388 136 IDECPSNQVSKL----QFLEYLHIDCCMKL----RSAK---ISSRCLKKLFFKG 178 (226)
Q Consensus 136 t~~~~~~l~~~~----~~Le~L~l~~C~~L----~~l~---i~~~~L~~L~l~~ 178 (226)
++..+..+...+ +.|+.|++.+|..- ..+. ...++|+++++.+
T Consensus 234 ~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~ 287 (319)
T cd00116 234 TDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRG 287 (319)
T ss_pred chHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCC
Confidence 886555555443 79999999998421 1111 1124677777764
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.28 E-value=2.7e-06 Score=79.60 Aligned_cols=58 Identities=22% Similarity=0.158 Sum_probs=36.1
Q ss_pred CCCccccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeecc
Q 040388 2 NLPQVAFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDC 68 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 68 (226)
.+|..+. ++|+.|.+.+|.+...+. ..++|++|+|++|.++. +. ...+.|++|++++|
T Consensus 215 sLP~~l~--~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~Lts--LP---~lp~sL~~L~Ls~N 272 (788)
T PRK15387 215 TLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTS--LP---VLPPGLLELSIFSN 272 (788)
T ss_pred cCCcchh--cCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCc--cc---CcccccceeeccCC
Confidence 3566554 367888888877764332 35788888888876531 11 12356777777665
No 16
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.24 E-value=1.6e-07 Score=83.21 Aligned_cols=143 Identities=21% Similarity=0.212 Sum_probs=87.9
Q ss_pred cccCCccEEEeccc-cccc------ccCccCCCcccEEEeccee-cCHHHHHHHHhcCCccceeeeeccCCceEEe----
Q 040388 8 FNAESIVVLELQFC-KLES------LRNNVTLSSLRKLCSSHVY-EDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---- 75 (226)
Q Consensus 8 ~~~~sL~~L~L~~c-~~~~------~~~~~~l~sLk~L~L~~~~-~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---- 75 (226)
..++.|+.|++++| .... ......++.|+.|+++.+. +++.++..+...||+||.|.+.+|..+....
T Consensus 211 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i 290 (482)
T KOG1947|consen 211 LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSI 290 (482)
T ss_pred hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHH
Confidence 45778888888873 2210 1122346788888888877 5788888888888888888877777643221
Q ss_pred cCCCCCcceEEeccCCCc-----eEEEEecceeeEEEe---CC-----------CC-----ccccccccCcccCcEEEee
Q 040388 76 LPDLNNLKEFKAYDNFRL-----QRLHINGVNVCSIDL---AS-----------RR-----TLSDINVAPCKHLEKLKLS 131 (226)
Q Consensus 76 i~~~~~Lk~L~l~~c~~l-----~~~~~~~~~L~~L~~---~~-----------~~-----~~~~~~~~~~~~L~~L~L~ 131 (226)
..+|++|++++++.|..+ ..+...+|+|+.+.. .+ .. .........|++++.+.+.
T Consensus 291 ~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~ 370 (482)
T KOG1947|consen 291 AERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLS 370 (482)
T ss_pred HHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhh
Confidence 134778888888877643 222234565555441 11 00 1122245678888888888
Q ss_pred ccccCchhHHHHHhcCCCC
Q 040388 132 GLYIIDECPSNQVSKLQFL 150 (226)
Q Consensus 132 ~~~it~~~~~~l~~~~~~L 150 (226)
++.+++........+||+|
T Consensus 371 ~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 371 YCGISDLGLELSLRGCPNL 389 (482)
T ss_pred hhhccCcchHHHhcCCccc
Confidence 7776555544556677766
No 17
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.22 E-value=4.7e-07 Score=70.02 Aligned_cols=129 Identities=20% Similarity=0.200 Sum_probs=44.3
Q ss_pred ccCCccEEEecccccccccCc-cCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe--c-CCCCCcce
Q 040388 9 NAESIVVLELQFCKLESLRNN-VTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE--L-PDLNNLKE 84 (226)
Q Consensus 9 ~~~sL~~L~L~~c~~~~~~~~-~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~--i-~~~~~Lk~ 84 (226)
++..+++|+|.|+.+...... ..+.+|+.|+|++|.++. +.. +.+++.|++|+++++. +..+. + ..+|+|+.
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~--l~~-l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITK--LEG-LPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQE 92 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S----TT-----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccccchhhhhcCCCEEECCCCCCcc--ccC-ccChhhhhhcccCCCC-CCccccchHHhCCcCCE
Confidence 344677777777776543222 246777777777776621 111 3445667777666652 22221 1 13566666
Q ss_pred EEeccCCCceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchh--HHHHHhcCCCCcEEeccccc
Q 040388 85 FKAYDNFRLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDEC--PSNQVSKLQFLEYLHIDCCM 159 (226)
Q Consensus 85 L~l~~c~~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~--~~~l~~~~~~Le~L~l~~C~ 159 (226)
|.++++. +.+ ......+..+++|++|++.+|.+++.. -..++..+|+|+.|+-....
T Consensus 93 L~L~~N~-I~~-----------------l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 93 LYLSNNK-ISD-----------------LNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp EE-TTS----S-----------------CCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred EECcCCc-CCC-----------------hHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEcc
Confidence 6666552 111 001124567899999999999887542 23567788999998876553
No 18
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.15 E-value=4.9e-07 Score=75.64 Aligned_cols=149 Identities=18% Similarity=0.205 Sum_probs=81.1
Q ss_pred cCCccEEEecccccccc------cCccCCCcccEEEecceec---CHHH------HHHHHhcCCccceeeeeccC----C
Q 040388 10 AESIVVLELQFCKLESL------RNNVTLSSLRKLCSSHVYE---DDQV------IEDFVAGCPLIEYMHVFDCG----G 70 (226)
Q Consensus 10 ~~sL~~L~L~~c~~~~~------~~~~~l~sLk~L~L~~~~~---~~~~------l~~l~~~cp~Le~L~l~~c~----~ 70 (226)
-.+++.++|+|+.+... ....+-++|+..+++...- .++. +..-+.+||.|+.|+|+++- +
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 46788999999987621 1112345777777766432 1222 22335678888888888872 1
Q ss_pred ceEE--ecCCCCCcceEEeccCC-C----------ce-----EEEEecceeeEEEe-CCCC--cc---ccccccCcccCc
Q 040388 71 LKCL--ELPDLNNLKEFKAYDNF-R----------LQ-----RLHINGVNVCSIDL-ASRR--TL---SDINVAPCKHLE 126 (226)
Q Consensus 71 l~~l--~i~~~~~Lk~L~l~~c~-~----------l~-----~~~~~~~~L~~L~~-~~~~--~~---~~~~~~~~~~L~ 126 (226)
.+.+ -|++|..|++|.+.+|. + +. .-.-+.|.|+.|.+ +++. .. ....+..++.|+
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE 188 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence 1111 14557788888888774 0 00 11123466777763 2221 11 011244556666
Q ss_pred EEEeeccccCchh---HHHHHhcCCCCcEEecccc
Q 040388 127 KLKLSGLYIIDEC---PSNQVSKLQFLEYLHIDCC 158 (226)
Q Consensus 127 ~L~L~~~~it~~~---~~~l~~~~~~Le~L~l~~C 158 (226)
.+.+.+|.|.... +..-+..||+|+.|++.+.
T Consensus 189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DN 223 (382)
T KOG1909|consen 189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDN 223 (382)
T ss_pred eEEEecccccCchhHHHHHHHHhCCcceeeecccc
Confidence 6666666653322 2233456666776666654
No 19
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.08 E-value=1.2e-06 Score=81.13 Aligned_cols=146 Identities=19% Similarity=0.172 Sum_probs=96.8
Q ss_pred CCccEEEecccccc---cc-cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE-ecCCCCCcceE
Q 040388 11 ESIVVLELQFCKLE---SL-RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL-ELPDLNNLKEF 85 (226)
Q Consensus 11 ~sL~~L~L~~c~~~---~~-~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l-~i~~~~~Lk~L 85 (226)
.+|++|+++|-... ++ ....-||+|+.|.+.+..+..+.+..+..++|+|..||++++ ++..+ -++.+.+|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNLSGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCcHHHhccccHHHH
Confidence 57999999986532 22 223359999999999999966669999999999999999997 33333 23445556555
Q ss_pred EeccCC-----CceEEEEecceeeEEEeCCC--Cccccc------cccCcccCcEEEeeccccCchhHHHHHhcCCCCcE
Q 040388 86 KAYDNF-----RLQRLHINGVNVCSIDLASR--RTLSDI------NVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEY 152 (226)
Q Consensus 86 ~l~~c~-----~l~~~~~~~~~L~~L~~~~~--~~~~~~------~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~ 152 (226)
.+.+-. .+.++ .+..+|+.||.+.. .....+ .-..+|+|+.|+.++..++++.++.+...-|+|+.
T Consensus 201 ~mrnLe~e~~~~l~~L-F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDL-FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred hccCCCCCchhhHHHH-hcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 554432 11111 24567777774322 100000 11357889999999888888888888777788887
Q ss_pred Eecccc
Q 040388 153 LHIDCC 158 (226)
Q Consensus 153 L~l~~C 158 (226)
...-+|
T Consensus 280 i~~~~~ 285 (699)
T KOG3665|consen 280 IAALDC 285 (699)
T ss_pred hhhhhh
Confidence 765544
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.07 E-value=5.9e-06 Score=77.34 Aligned_cols=34 Identities=21% Similarity=0.035 Sum_probs=25.5
Q ss_pred cCCccEEEecccccccccCccCCCcccEEEecceec
Q 040388 10 AESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYE 45 (226)
Q Consensus 10 ~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~ 45 (226)
.++|++|++++|.+...+. ..++|+.|++.++.+
T Consensus 241 p~~Lk~LdLs~N~LtsLP~--lp~sL~~L~Ls~N~L 274 (788)
T PRK15387 241 PPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPL 274 (788)
T ss_pred CCCCcEEEecCCccCcccC--cccccceeeccCCch
Confidence 4789999999998764332 357888888888765
No 21
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.97 E-value=1.4e-06 Score=72.92 Aligned_cols=166 Identities=22% Similarity=0.264 Sum_probs=113.6
Q ss_pred cCCCcccEEEecceec---CHHHHHHHHhcCCccceeeeeccCC-----------ceEE----ecCCCCCcceEEeccCC
Q 040388 30 VTLSSLRKLCSSHVYE---DDQVIEDFVAGCPLIEYMHVFDCGG-----------LKCL----ELPDLNNLKEFKAYDNF 91 (226)
Q Consensus 30 ~~l~sLk~L~L~~~~~---~~~~l~~l~~~cp~Le~L~l~~c~~-----------l~~l----~i~~~~~Lk~L~l~~c~ 91 (226)
..+|.|++|+|+.|-+ ....+..+++.|..||+|.|.+|-- |..+ .+..-+.|+.+...++.
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 4688999999999988 4556788899999999999999931 2111 23445789988888775
Q ss_pred CceE--------EEEecceeeEEE--eCCCCcc----ccccccCcccCcEEEeeccccCchh---HHHHHhcCCCCcEEe
Q 040388 92 RLQR--------LHINGVNVCSID--LASRRTL----SDINVAPCKHLEKLKLSGLYIIDEC---PSNQVSKLQFLEYLH 154 (226)
Q Consensus 92 ~l~~--------~~~~~~~L~~L~--~~~~~~~----~~~~~~~~~~L~~L~L~~~~it~~~---~~~l~~~~~~Le~L~ 154 (226)
+.+ ..-..|.|+.+. +++.... ....+..|++|+.|++..|.++... +...++.+|+|+.|+
T Consensus 169 -len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 169 -LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred -cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence 111 111347888888 3343111 1124678999999999999987653 345567889999999
Q ss_pred cccccc--------ceeeccCccccceeEEcc-eE-----------EEeCCCcceEEEeecc
Q 040388 155 IDCCMK--------LRSAKISSRCLKKLFFKG-EF-----------MLDTSNLSTFEYQGNL 196 (226)
Q Consensus 155 l~~C~~--------L~~l~i~~~~L~~L~l~~-~~-----------~i~~p~L~sl~~~g~~ 196 (226)
+++|.- ...+.-+.+.|+.+.+.+ ++ .-+-|.|..|...|+.
T Consensus 248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 999932 223334457788888876 11 1225777777777763
No 22
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=8.3e-07 Score=73.15 Aligned_cols=163 Identities=14% Similarity=0.080 Sum_probs=114.4
Q ss_pred CcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE--ecCCCCCcceEEeccCCCceEEE-----EecceeeE
Q 040388 33 SSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL--ELPDLNNLKEFKAYDNFRLQRLH-----INGVNVCS 105 (226)
Q Consensus 33 ~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l--~i~~~~~Lk~L~l~~c~~l~~~~-----~~~~~L~~ 105 (226)
..|+.|+|+...++...+..+++.|.+|+.|.+.+..--..+ .|..=.+|+.++++.|.++.... .+|..|+.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 469999999999999999999999999999998876321111 12212689999999998766533 35677777
Q ss_pred EE--eCCCCccc--cccccCcccCcEEEeeccc--cCchhHHHHHhcCCCCcEEeccccccceee----ccCccccceeE
Q 040388 106 ID--LASRRTLS--DINVAPCKHLEKLKLSGLY--IIDECPSNQVSKLQFLEYLHIDCCMKLRSA----KISSRCLKKLF 175 (226)
Q Consensus 106 L~--~~~~~~~~--~~~~~~~~~L~~L~L~~~~--it~~~~~~l~~~~~~Le~L~l~~C~~L~~l----~i~~~~L~~L~ 175 (226)
|+ +++...+. .+...--++|+.|+++|+. +.+..+..+...||+|..|++++|..++.- -...+.|+++.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 77 45532221 1112234688999999873 444456788899999999999999887652 12346788888
Q ss_pred Ecc------e--EE-EeCCCcceEEEeec
Q 040388 176 FKG------E--FM-LDTSNLSTFEYQGN 195 (226)
Q Consensus 176 l~~------~--~~-i~~p~L~sl~~~g~ 195 (226)
+.. + ++ -..|.|..+...|-
T Consensus 345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 874 1 23 34789998888875
No 23
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.94 E-value=6.8e-06 Score=63.56 Aligned_cols=82 Identities=20% Similarity=0.181 Sum_probs=37.6
Q ss_pred ccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccC--CceEE-ecCCCCCcceE
Q 040388 9 NAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCG--GLKCL-ELPDLNNLKEF 85 (226)
Q Consensus 9 ~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~--~l~~l-~i~~~~~Lk~L 85 (226)
.+.+|++|++++|.+....+...++.|+.|+++++.++.-. ..+...||+|++|.++++. ++..+ .++.|++|+.|
T Consensus 40 ~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L 118 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL 118 (175)
T ss_dssp T-TT--EEE-TTS--S--TT----TT--EEE--SS---S-C-HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred hhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence 46799999999999876566667999999999999983211 2234579999999998872 33333 34568889999
Q ss_pred EeccCC
Q 040388 86 KAYDNF 91 (226)
Q Consensus 86 ~l~~c~ 91 (226)
++.++.
T Consensus 119 ~L~~NP 124 (175)
T PF14580_consen 119 SLEGNP 124 (175)
T ss_dssp E-TT-G
T ss_pred eccCCc
Confidence 988874
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.88 E-value=2.6e-05 Score=73.10 Aligned_cols=34 Identities=26% Similarity=0.277 Sum_probs=18.2
Q ss_pred CCccEEEecccccccccCccCCCcccEEEecceec
Q 040388 11 ESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYE 45 (226)
Q Consensus 11 ~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~ 45 (226)
++|+.|+|++|.+...+.. -+++|++|++++|.+
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~-l~~nL~~L~Ls~N~L 232 (754)
T PRK15370 199 EQITTLILDNNELKSLPEN-LQGNIKTLYANSNQL 232 (754)
T ss_pred cCCcEEEecCCCCCcCChh-hccCCCEEECCCCcc
Confidence 3566667766665432221 134566666666554
No 25
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.88 E-value=8.9e-06 Score=76.18 Aligned_cols=142 Identities=15% Similarity=0.167 Sum_probs=72.7
Q ss_pred CCccccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEecCCCCCc
Q 040388 3 LPQVAFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLELPDLNNL 82 (226)
Q Consensus 3 lP~~~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~i~~~~~L 82 (226)
+|..++ ++|++|++++|.+...+.. -.++|++|+|++|.+.. +..-+ ..+|+.|+++++ .+..+.-.-.++|
T Consensus 214 LP~~l~--~nL~~L~Ls~N~LtsLP~~-l~~~L~~L~Ls~N~L~~--LP~~l--~s~L~~L~Ls~N-~L~~LP~~l~~sL 285 (754)
T PRK15370 214 LPENLQ--GNIKTLYANSNQLTSIPAT-LPDTIQEMELSINRITE--LPERL--PSALQSLDLFHN-KISCLPENLPEEL 285 (754)
T ss_pred CChhhc--cCCCEEECCCCccccCChh-hhccccEEECcCCccCc--CChhH--hCCCCEEECcCC-ccCccccccCCCC
Confidence 555554 4789999998887643321 23578888888887631 11111 136788887754 3433321112456
Q ss_pred ceEEeccCCCceEEEE----------------------ecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhH
Q 040388 83 KEFKAYDNFRLQRLHI----------------------NGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECP 140 (226)
Q Consensus 83 k~L~l~~c~~l~~~~~----------------------~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~ 140 (226)
+.|++++|. ++.+.. -.++|++|++.+... ..+...-+++|+.|++++|.++. .+
T Consensus 286 ~~L~Ls~N~-Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~L-t~LP~~l~~sL~~L~Ls~N~L~~-LP 362 (754)
T PRK15370 286 RYLSVYDNS-IRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENAL-TSLPASLPPELQVLDVSKNQITV-LP 362 (754)
T ss_pred cEEECCCCc-cccCcccchhhHHHHHhcCCccccCCccccccceeccccCCcc-ccCChhhcCcccEEECCCCCCCc-CC
Confidence 666666653 221111 123455554322100 00111123567777777776653 12
Q ss_pred HHHHhcCCCCcEEecccc
Q 040388 141 SNQVSKLQFLEYLHIDCC 158 (226)
Q Consensus 141 ~~l~~~~~~Le~L~l~~C 158 (226)
..+ .+.|+.|++.+|
T Consensus 363 ~~l---p~~L~~LdLs~N 377 (754)
T PRK15370 363 ETL---PPTITTLDVSRN 377 (754)
T ss_pred hhh---cCCcCEEECCCC
Confidence 222 256777777775
No 26
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.81 E-value=8.2e-06 Score=72.21 Aligned_cols=128 Identities=18% Similarity=0.183 Sum_probs=82.9
Q ss_pred CCCcccEEEecceec-CHHHHHHHHhcCCccceeeeecc-CCc------eEEecCCCCCcceEEeccCCCceEEE-----
Q 040388 31 TLSSLRKLCSSHVYE-DDQVIEDFVAGCPLIEYMHVFDC-GGL------KCLELPDLNNLKEFKAYDNFRLQRLH----- 97 (226)
Q Consensus 31 ~l~sLk~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c-~~l------~~l~i~~~~~Lk~L~l~~c~~l~~~~----- 97 (226)
.+|.|+.|.+..+.. ++..+..+...||.|++|++.+| ... .......|++|+.++++.|..+.+..
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 478888888888765 66667888888888888888873 211 11123457888888888876444332
Q ss_pred EecceeeEEEeCCCCc----cccccccCcccCcEEEeeccc-cCchhHHHHHhcCCCCcEEecccc
Q 040388 98 INGVNVCSIDLASRRT----LSDINVAPCKHLEKLKLSGLY-IIDECPSNQVSKLQFLEYLHIDCC 158 (226)
Q Consensus 98 ~~~~~L~~L~~~~~~~----~~~~~~~~~~~L~~L~L~~~~-it~~~~~~l~~~~~~Le~L~l~~C 158 (226)
-.+|+|+++...+... ........|++|++|++++|. +++..+..+..+|++++.|.+..+
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 2367888877433311 111234577888888888775 456656666677887777665443
No 27
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.77 E-value=5.9e-07 Score=80.64 Aligned_cols=63 Identities=17% Similarity=0.193 Sum_probs=38.7
Q ss_pred CCccccccCCccEEEecccccccc--cCccCCCcccEEEecceec--CHHHHHHHHhcCCccceeeeeccC
Q 040388 3 LPQVAFNAESIVVLELQFCKLESL--RNNVTLSSLRKLCSSHVYE--DDQVIEDFVAGCPLIEYMHVFDCG 69 (226)
Q Consensus 3 lP~~~~~~~sL~~L~L~~c~~~~~--~~~~~l~sLk~L~L~~~~~--~~~~l~~l~~~cp~Le~L~l~~c~ 69 (226)
.|..+-..+++-+|+|++|++... +.++++..|-.|+|+++++ -.-.+.+++ .|+.|++++++
T Consensus 118 vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~----~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 118 VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLS----MLQTLKLSNNP 184 (1255)
T ss_pred cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHh----hhhhhhcCCCh
Confidence 466666677777788887776532 3345666777777777765 222334433 46666666653
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.77 E-value=2.8e-06 Score=70.29 Aligned_cols=124 Identities=19% Similarity=0.128 Sum_probs=79.4
Q ss_pred CCcccEEEecceec--CHHHHHHHHhcCCccceeeeeccCCceEEecCCCCCcceEEeccCC--CceEEEEecceeeEEE
Q 040388 32 LSSLRKLCSSHVYE--DDQVIEDFVAGCPLIEYMHVFDCGGLKCLELPDLNNLKEFKAYDNF--RLQRLHINGVNVCSID 107 (226)
Q Consensus 32 l~sLk~L~L~~~~~--~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~i~~~~~Lk~L~l~~c~--~l~~~~~~~~~L~~L~ 107 (226)
|+-|+.++|+++.+ -|+. +.--|.++.|+++++.-...=++..+++|+.|+++++. .+...+....|+++|.
T Consensus 283 Wq~LtelDLS~N~I~~iDES----vKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDES----VKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchhhhhhh----hhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 45677888888876 3333 33348889999888754333345567889999998875 2333333455667776
Q ss_pred eCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccc
Q 040388 108 LASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCM 159 (226)
Q Consensus 108 ~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~ 159 (226)
+.+.....-..+..+.+|.+|++++|+|....-..-++++|+||.+.+.+.+
T Consensus 359 La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 359 LAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 5442100011244566889999999998653222345789999999888754
No 29
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.74 E-value=1.6e-06 Score=80.55 Aligned_cols=43 Identities=28% Similarity=0.191 Sum_probs=22.7
Q ss_pred CCccccccCCccEEEecccccccc-cCccCCCcccEEEecceec
Q 040388 3 LPQVAFNAESIVVLELQFCKLESL-RNNVTLSSLRKLCSSHVYE 45 (226)
Q Consensus 3 lP~~~~~~~sL~~L~L~~c~~~~~-~~~~~l~sLk~L~L~~~~~ 45 (226)
+|..++...+|+.|++..|.+... +....+.+|++|+|.++.+
T Consensus 279 lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L 322 (1081)
T KOG0618|consen 279 LPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNL 322 (1081)
T ss_pred hHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccc
Confidence 445555555566666666555432 2233455666666655554
No 30
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.62 E-value=1.5e-05 Score=74.07 Aligned_cols=159 Identities=16% Similarity=0.143 Sum_probs=101.3
Q ss_pred cccEEEecceecCHHHHHHHHhcCCccceeeeeccCCce-------EEecC----------CCCCcceEEeccCC-----
Q 040388 34 SLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLK-------CLELP----------DLNNLKEFKAYDNF----- 91 (226)
Q Consensus 34 sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~-------~l~i~----------~~~~Lk~L~l~~c~----- 91 (226)
++.+.++.+.......++-+-..+ |++|.+.+....+ .++|. .-.+|++|+|++..
T Consensus 61 ~ltki~l~~~~~~~~~~~~l~~~~--L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~ 138 (699)
T KOG3665|consen 61 NLTKIDLKNVTLQHQTLEMLRKQD--LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNG 138 (699)
T ss_pred eeEEeeccceecchhHHHHHhhcc--ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhcc
Confidence 566777777766555555443333 8999887763321 11111 11578888888754
Q ss_pred CceEEEEecceeeEEEeCCCCcc---ccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccceeec---
Q 040388 92 RLQRLHINGVNVCSIDLASRRTL---SDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAK--- 165 (226)
Q Consensus 92 ~l~~~~~~~~~L~~L~~~~~~~~---~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~--- 165 (226)
..+.+.-..|+|++|..+|.... +.....++++|..|++++.+++.- ...+.+++||.|.+.+.+.-..-.
T Consensus 139 W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq~L~mrnLe~e~~~~l~~ 215 (699)
T KOG3665|consen 139 WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQVLSMRNLEFESYQDLID 215 (699)
T ss_pred HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHHHHhccCCCCCchhhHHH
Confidence 33455667899999998775221 122346889999999999998874 456788888888877643222111
Q ss_pred -cCccccceeEEcc--------------eEEEeCCCcceEEEeecce
Q 040388 166 -ISSRCLKKLFFKG--------------EFMLDTSNLSTFEYQGNLV 197 (226)
Q Consensus 166 -i~~~~L~~L~l~~--------------~~~i~~p~L~sl~~~g~~~ 197 (226)
+.=.+|+.|+++. +-....|+|..++..|..|
T Consensus 216 LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 216 LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 1124677777765 1234489999999998754
No 31
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.53 E-value=3.5e-06 Score=76.83 Aligned_cols=100 Identities=19% Similarity=0.169 Sum_probs=44.6
Q ss_pred CccceeeeeccCCceEEecCCCCCcceEEeccCC--CceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeecccc
Q 040388 58 PLIEYMHVFDCGGLKCLELPDLNNLKEFKAYDNF--RLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYI 135 (226)
Q Consensus 58 p~Le~L~l~~c~~l~~l~i~~~~~Lk~L~l~~c~--~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~i 135 (226)
|.+|.|+|+.+.-.+.-.+..|+.||+|+++.+. .+..+.-.+-.|+.|.++|.....-..+..+++|+.|++++|-+
T Consensus 187 ~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 187 PALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLSYNLL 266 (1096)
T ss_pred HHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchhHhhh
Confidence 4455555555432221133446777777776653 22222222222555554442111112344556666666666655
Q ss_pred CchhHHHHHhcCCCCcEEeccc
Q 040388 136 IDECPSNQVSKLQFLEYLHIDC 157 (226)
Q Consensus 136 t~~~~~~l~~~~~~Le~L~l~~ 157 (226)
.+..--.....+..|..|.+.|
T Consensus 267 ~~hseL~pLwsLs~L~~L~LeG 288 (1096)
T KOG1859|consen 267 SEHSELEPLWSLSSLIVLWLEG 288 (1096)
T ss_pred hcchhhhHHHHHHHHHHHhhcC
Confidence 4432112222334445555554
No 32
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.51 E-value=0.0001 Score=46.55 Aligned_cols=57 Identities=19% Similarity=0.204 Sum_probs=37.9
Q ss_pred CCccEEEeccccccccc--CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeecc
Q 040388 11 ESIVVLELQFCKLESLR--NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDC 68 (226)
Q Consensus 11 ~sL~~L~L~~c~~~~~~--~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 68 (226)
++|++|++++|.+...+ ...++++|++|+++++.++.- -...+.++|+|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCC
Confidence 46888888888776432 334688888888888776211 1123667777777777765
No 33
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.47 E-value=4.7e-06 Score=77.59 Aligned_cols=65 Identities=18% Similarity=0.209 Sum_probs=47.0
Q ss_pred CCCccccccCCccEEEeccccccccc-CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeecc
Q 040388 2 NLPQVAFNAESIVVLELQFCKLESLR-NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDC 68 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~c~~~~~~-~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 68 (226)
.+|..+..|.+|+.++..++.+...+ ......+|+.|+...|.+ +-+.....+...|+.|++..+
T Consensus 255 ~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel--~yip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 255 NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNEL--EYIPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhh--hhCCCcccccceeeeeeehhc
Confidence 46888889999999999999886432 334578888888888753 223333556677899988765
No 34
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=97.44 E-value=0.00016 Score=37.58 Aligned_cols=25 Identities=36% Similarity=0.697 Sum_probs=22.8
Q ss_pred cccEEEecceec-CHHHHHHHHhcCC
Q 040388 34 SLRKLCSSHVYE-DDQVIEDFVAGCP 58 (226)
Q Consensus 34 sLk~L~L~~~~~-~~~~l~~l~~~cp 58 (226)
+||+|+|..+.+ +++.+++++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 689999999999 6668999999998
No 35
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.39 E-value=1e-06 Score=75.21 Aligned_cols=132 Identities=22% Similarity=0.254 Sum_probs=57.4
Q ss_pred CCccccccCCccEEEecccccccc-cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE-ecCCCC
Q 040388 3 LPQVAFNAESIVVLELQFCKLESL-RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL-ELPDLN 80 (226)
Q Consensus 3 lP~~~~~~~sL~~L~L~~c~~~~~-~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l-~i~~~~ 80 (226)
+|...+++.+|..|.+.++.+... +..+.+.+||.|+..++.+ +.+..=+++...|+-|++.++. +..+ .+.||.
T Consensus 152 lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L--~tlP~~lg~l~~L~~LyL~~Nk-i~~lPef~gcs 228 (565)
T KOG0472|consen 152 LPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLL--ETLPPELGGLESLELLYLRRNK-IRFLPEFPGCS 228 (565)
T ss_pred CchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhh--hcCChhhcchhhhHHHHhhhcc-cccCCCCCccH
Confidence 445555555555555555554322 2223455555555544422 1122223333445555555442 2222 455666
Q ss_pred CcceEEeccCC--Cce-EEEEecceeeEEEeCCC-CccccccccCcccCcEEEeeccccCc
Q 040388 81 NLKEFKAYDNF--RLQ-RLHINGVNVCSIDLASR-RTLSDINVAPCKHLEKLKLSGLYIID 137 (226)
Q Consensus 81 ~Lk~L~l~~c~--~l~-~~~~~~~~L~~L~~~~~-~~~~~~~~~~~~~L~~L~L~~~~it~ 137 (226)
.|+.+.++.+. -++ ....+.+++..+++++. ....+....-+++|.+|+++.|.|+.
T Consensus 229 ~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~ 289 (565)
T KOG0472|consen 229 LLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISS 289 (565)
T ss_pred HHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcccc
Confidence 66666666553 111 11123455555554332 11111222334455566666555544
No 36
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.25 E-value=9.8e-06 Score=62.04 Aligned_cols=147 Identities=20% Similarity=0.188 Sum_probs=83.5
Q ss_pred cccccCCccEEEecccccccc-cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE--ecCCCCCc
Q 040388 6 VAFNAESIVVLELQFCKLESL-RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL--ELPDLNNL 82 (226)
Q Consensus 6 ~~~~~~sL~~L~L~~c~~~~~-~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l--~i~~~~~L 82 (226)
.+|+.+.++.|.|+++++... +....+.+|+.|.++++.+ +.+..-++..|.|+.|.+..+. +..+ -++++|.|
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi--e~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~l 104 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI--EELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPAL 104 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchh--hhcChhhhhchhhhheecchhh-hhcCccccCCCchh
Confidence 467788888999999987643 4555788999999988865 2233446677788888776442 1111 23456777
Q ss_pred ceEEeccCC----CceEEEEecceeeEEEeCCC-CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccc
Q 040388 83 KEFKAYDNF----RLQRLHINGVNVCSIDLASR-RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDC 157 (226)
Q Consensus 83 k~L~l~~c~----~l~~~~~~~~~L~~L~~~~~-~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~ 157 (226)
..|++..++ .+..-.....-|+.+.+.+. ....+-+.+.+.+|+.|.+..+++-.- +.+ ++.+..|+.|.+.+
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~l-pke-ig~lt~lrelhiqg 182 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSL-PKE-IGDLTRLRELHIQG 182 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhC-cHH-HHHHHHHHHHhccc
Confidence 777777654 11111111112222222221 112233556677777777777664321 222 34556666666666
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.16 E-value=0.00039 Score=43.85 Aligned_cols=41 Identities=24% Similarity=0.261 Sum_probs=30.9
Q ss_pred cccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccc
Q 040388 118 NVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCM 159 (226)
Q Consensus 118 ~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~ 159 (226)
.+.++++|++|++++|.++.-. ...+.++++|+.|+++++.
T Consensus 20 ~f~~l~~L~~L~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 20 SFSNLPNLETLDLSNNNLTSIP-PDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTTTGTTESEEEETSSSESEEE-TTTTTTSTTESEEEETSSS
T ss_pred HHcCCCCCCEeEccCCccCccC-HHHHcCCCCCCEEeCcCCc
Confidence 4667888999999988886542 3456788888888888753
No 38
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.02 E-value=1.6e-06 Score=74.16 Aligned_cols=65 Identities=23% Similarity=0.186 Sum_probs=37.6
Q ss_pred CCCccccccCCccEEEecccccccc-cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeecc
Q 040388 2 NLPQVAFNAESIVVLELQFCKLESL-RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDC 68 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~c~~~~~-~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 68 (226)
.+|+.++....++.|+.+++++... +.....++|++++.+++.+.+ +..=++.|-.+|+|+-.++
T Consensus 82 ~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~e--l~~~i~~~~~l~dl~~~~N 147 (565)
T KOG0472|consen 82 QLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKE--LPDSIGRLLDLEDLDATNN 147 (565)
T ss_pred hCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceee--cCchHHHHhhhhhhhcccc
Confidence 3566677777777777777766533 334467777777777765410 1111333445666665554
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.79 E-value=0.00097 Score=58.01 Aligned_cols=80 Identities=15% Similarity=0.154 Sum_probs=48.3
Q ss_pred ccCCccEEEecccccccccCccCCC--cccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEecC-CCCCcceE
Q 040388 9 NAESIVVLELQFCKLESLRNNVTLS--SLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLELP-DLNNLKEF 85 (226)
Q Consensus 9 ~~~sL~~L~L~~c~~~~~~~~~~l~--sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~i~-~~~~Lk~L 85 (226)
..+.++.|.+.++.+...+....+. +|+.|+++++.+.. +..-+..+|+|+.|++++|.--.--... ..++|+.+
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred cccceeEEecCCcccccCccccccchhhcccccccccchhh--hhhhhhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 3456788888887776443333443 78888888876422 2123667888888888887422111111 34667777
Q ss_pred EeccC
Q 040388 86 KAYDN 90 (226)
Q Consensus 86 ~l~~c 90 (226)
+++++
T Consensus 192 ~ls~N 196 (394)
T COG4886 192 DLSGN 196 (394)
T ss_pred eccCC
Confidence 77766
No 40
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.77 E-value=0.0034 Score=54.83 Aligned_cols=134 Identities=17% Similarity=0.231 Sum_probs=72.7
Q ss_pred ccCCccEEEecccccccccCccCCC-cccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEecCCCCCcceEEe
Q 040388 9 NAESIVVLELQFCKLESLRNNVTLS-SLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLELPDLNNLKEFKA 87 (226)
Q Consensus 9 ~~~sL~~L~L~~c~~~~~~~~~~l~-sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~i~~~~~Lk~L~l 87 (226)
.|+.+++|++++|.+...+ .+| +|+.|.+++|.-- +.+...+ .++|++|++.+|..+..+ . ++|++|++
T Consensus 50 ~~~~l~~L~Is~c~L~sLP---~LP~sLtsL~Lsnc~nL-tsLP~~L--P~nLe~L~Ls~Cs~L~sL--P--~sLe~L~L 119 (426)
T PRK15386 50 EARASGRLYIKDCDIESLP---VLPNELTEITIENCNNL-TTLPGSI--PEGLEKLTVCHCPEISGL--P--ESVRSLEI 119 (426)
T ss_pred HhcCCCEEEeCCCCCcccC---CCCCCCcEEEccCCCCc-ccCCchh--hhhhhheEccCccccccc--c--cccceEEe
Confidence 4678899999999776433 344 6999999886431 1111111 257899999888776543 2 56788887
Q ss_pred ccCCCceEEEEecceeeEEEeCCCCcc--ccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccc
Q 040388 88 YDNFRLQRLHINGVNVCSIDLASRRTL--SDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDC 157 (226)
Q Consensus 88 ~~c~~l~~~~~~~~~L~~L~~~~~~~~--~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~ 157 (226)
.++ ....+..--++|+.|.+.+.... ......-.++|++|.+.+|..... +..+ + .+|+.|+++.
T Consensus 120 ~~n-~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~L-P~~L-P--~SLk~L~ls~ 186 (426)
T PRK15386 120 KGS-ATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIIL-PEKL-P--ESLQSITLHI 186 (426)
T ss_pred CCC-CCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccC-cccc-c--ccCcEEEecc
Confidence 643 22222212245666664321100 000001224777787777653321 1111 1 4677777654
No 41
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.70 E-value=0.0016 Score=38.32 Aligned_cols=35 Identities=20% Similarity=0.152 Sum_probs=20.2
Q ss_pred CCccEEEecccccccccC-ccCCCcccEEEecceec
Q 040388 11 ESIVVLELQFCKLESLRN-NVTLSSLRKLCSSHVYE 45 (226)
Q Consensus 11 ~sL~~L~L~~c~~~~~~~-~~~l~sLk~L~L~~~~~ 45 (226)
++|++|++++|.+...+. ...+++|+.|+++++.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 356777777776653333 44567777777766655
No 42
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.58 E-value=0.0017 Score=54.01 Aligned_cols=151 Identities=18% Similarity=0.118 Sum_probs=94.6
Q ss_pred ccCCccEEEecccccccccC--ccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEec-----CC-CC
Q 040388 9 NAESIVVLELQFCKLESLRN--NVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLEL-----PD-LN 80 (226)
Q Consensus 9 ~~~sL~~L~L~~c~~~~~~~--~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~i-----~~-~~ 80 (226)
..+.|++|+|+.|++...-. .....+|++|.|.+..++=+.....+..-|.+++|.++.+. ++.+.+ .. -+
T Consensus 95 ~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~-~rq~n~Dd~c~e~~s~ 173 (418)
T KOG2982|consen 95 QLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS-LRQLNLDDNCIEDWST 173 (418)
T ss_pred cCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch-hhhhccccccccccch
Confidence 46789999999988764211 13456899999988877666777888889999999998762 111111 10 15
Q ss_pred CcceEEeccCCC-----ceEEEEecceeeEEEeC-CC--CccccccccCcccCcEEEeeccccCc-hhHHHHHhcCCCCc
Q 040388 81 NLKEFKAYDNFR-----LQRLHINGVNVCSIDLA-SR--RTLSDINVAPCKHLEKLKLSGLYIID-ECPSNQVSKLQFLE 151 (226)
Q Consensus 81 ~Lk~L~l~~c~~-----l~~~~~~~~~L~~L~~~-~~--~~~~~~~~~~~~~L~~L~L~~~~it~-~~~~~l~~~~~~Le 151 (226)
.++++...+|.. .-.+..-.||+..+-.+ |. ..........++.+.-|++..++|.+ +.+.. ...|+.|.
T Consensus 174 ~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~-Ln~f~~l~ 252 (418)
T KOG2982|consen 174 EVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDA-LNGFPQLV 252 (418)
T ss_pred hhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHH-HcCCchhh
Confidence 677777777751 11223345777766633 32 11111234455666677787777744 33334 46788898
Q ss_pred EEeccccccc
Q 040388 152 YLHIDCCMKL 161 (226)
Q Consensus 152 ~L~l~~C~~L 161 (226)
.|.+...+-.
T Consensus 253 dlRv~~~Pl~ 262 (418)
T KOG2982|consen 253 DLRVSENPLS 262 (418)
T ss_pred eeeccCCccc
Confidence 8888876543
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.38 E-value=0.0043 Score=36.49 Aligned_cols=34 Identities=38% Similarity=0.415 Sum_probs=24.6
Q ss_pred ccCcEEEeeccccCchhHHHHHhcCCCCcEEecccc
Q 040388 123 KHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCC 158 (226)
Q Consensus 123 ~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C 158 (226)
++|++|+++++.|++- ...+.++++|+.|+++++
T Consensus 1 ~~L~~L~l~~N~i~~l--~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 1 KNLEELDLSNNQITDL--PPELSNLPNLETLNLSNN 34 (44)
T ss_dssp TT-SEEEETSSS-SSH--GGHGTTCTTSSEEEETSS
T ss_pred CcceEEEccCCCCccc--CchHhCCCCCCEEEecCC
Confidence 4688899999888863 333578889999988886
No 44
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.24 E-value=0.0093 Score=49.15 Aligned_cols=185 Identities=16% Similarity=0.131 Sum_probs=109.7
Q ss_pred cCCccEEEeccccccc-----ccC-ccCCCcccEEEecceec---CHHH------HHHHHhcCCccceeeeeccC-CceE
Q 040388 10 AESIVVLELQFCKLES-----LRN-NVTLSSLRKLCSSHVYE---DDQV------IEDFVAGCPLIEYMHVFDCG-GLKC 73 (226)
Q Consensus 10 ~~sL~~L~L~~c~~~~-----~~~-~~~l~sLk~L~L~~~~~---~~~~------l~~l~~~cp~Le~L~l~~c~-~l~~ 73 (226)
..+++.++|+||.+.. ... ..+-.+|+...++.... .++. +...+.+||.|+..+++++. +.+.
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 5688999999998862 111 12346777777766543 2222 23346789999999999873 2222
Q ss_pred E-----ecCCCCCcceEEeccCCCceEE-----------------EEecceeeEEEe-CCC--Cccc---cccccCcccC
Q 040388 74 L-----ELPDLNNLKEFKAYDNFRLQRL-----------------HINGVNVCSIDL-ASR--RTLS---DINVAPCKHL 125 (226)
Q Consensus 74 l-----~i~~~~~Lk~L~l~~c~~l~~~-----------------~~~~~~L~~L~~-~~~--~~~~---~~~~~~~~~L 125 (226)
. -|++-..|++|.+++|. +..+ .-+.|.|+++.+ .++ ..+. ...+.+-.+|
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL 187 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence 1 24555889999999884 2211 225688888873 222 1111 1223444688
Q ss_pred cEEEeeccccCchhHH----HHHhcCCCCcEEeccccccce--e--e--ccC-ccccceeEEcce--------------E
Q 040388 126 EKLKLSGLYIIDECPS----NQVSKLQFLEYLHIDCCMKLR--S--A--KIS-SRCLKKLFFKGE--------------F 180 (226)
Q Consensus 126 ~~L~L~~~~it~~~~~----~l~~~~~~Le~L~l~~C~~L~--~--l--~i~-~~~L~~L~l~~~--------------~ 180 (226)
+.+.+.+|.|....+. .-...+.+|+.|++.+...-. + + ... .+.|..|.+.+- -
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~ 267 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFN 267 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhh
Confidence 8888888887665432 223577889999888753211 1 1 112 234566666540 2
Q ss_pred EEeCCCcceEEEeec
Q 040388 181 MLDTSNLSTFEYQGN 195 (226)
Q Consensus 181 ~i~~p~L~sl~~~g~ 195 (226)
....|||+.+.+.-+
T Consensus 268 e~~~p~l~~L~~~Yn 282 (388)
T COG5238 268 EKFVPNLMPLPGDYN 282 (388)
T ss_pred hhcCCCccccccchh
Confidence 466788887766433
No 45
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.22 E-value=0.016 Score=50.70 Aligned_cols=133 Identities=12% Similarity=0.137 Sum_probs=65.0
Q ss_pred CCcccEEEecceecCHHHHHHHHhcCC-ccceeeeeccCCceEEecCCCCCcceEEeccCCCceEEEEecceeeEEEeCC
Q 040388 32 LSSLRKLCSSHVYEDDQVIEDFVAGCP-LIEYMHVFDCGGLKCLELPDLNNLKEFKAYDNFRLQRLHINGVNVCSIDLAS 110 (226)
Q Consensus 32 l~sLk~L~L~~~~~~~~~l~~l~~~cp-~Le~L~l~~c~~l~~l~i~~~~~Lk~L~l~~c~~l~~~~~~~~~L~~L~~~~ 110 (226)
++.++.|++++|.++ .+. ..| +|++|.+.+|.+++.+.-.-.++|++|.+++|..+..+. ++|+.|.+.+
T Consensus 51 ~~~l~~L~Is~c~L~--sLP----~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP---~sLe~L~L~~ 121 (426)
T PRK15386 51 ARASGRLYIKDCDIE--SLP----VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLP---ESVRSLEIKG 121 (426)
T ss_pred hcCCCEEEeCCCCCc--ccC----CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccccc---cccceEEeCC
Confidence 566666666666431 111 122 366666666666544421112466777777665444332 3455555332
Q ss_pred CCccccccccC-cccCcEEEeeccccCchhHHHHHhcC-CCCcEEeccccccceeeccCccccceeEEcc
Q 040388 111 RRTLSDINVAP-CKHLEKLKLSGLYIIDECPSNQVSKL-QFLEYLHIDCCMKLRSAKISSRCLKKLFFKG 178 (226)
Q Consensus 111 ~~~~~~~~~~~-~~~L~~L~L~~~~it~~~~~~l~~~~-~~Le~L~l~~C~~L~~l~i~~~~L~~L~l~~ 178 (226)
.... .+.. .++|+.|.+.+.+.... ..+...+ ++|+.|.+.+|..+..-..-..+|+.|.+..
T Consensus 122 n~~~---~L~~LPssLk~L~I~~~n~~~~--~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~ 186 (426)
T PRK15386 122 SATD---SIKNVPNGLTSLSINSYNPENQ--ARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSITLHI 186 (426)
T ss_pred CCCc---ccccCcchHhheeccccccccc--cccccccCCcccEEEecCCCcccCcccccccCcEEEecc
Confidence 1000 1112 23566666643321100 0001123 5899999999876542221235788888754
No 46
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.07 E-value=0.0012 Score=51.85 Aligned_cols=77 Identities=18% Similarity=0.233 Sum_probs=41.7
Q ss_pred CccEEEecccccccc--cCccCCCcccEEEecceec-CHHHHHHHHhcCCccceeeeeccCCceEEec---CCCCCcceE
Q 040388 12 SIVVLELQFCKLESL--RNNVTLSSLRKLCSSHVYE-DDQVIEDFVAGCPLIEYMHVFDCGGLKCLEL---PDLNNLKEF 85 (226)
Q Consensus 12 sL~~L~L~~c~~~~~--~~~~~l~sLk~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~i---~~~~~Lk~L 85 (226)
.++.++-+++.+... ....++++++.|.+..|.. +|..++.+-...|+||.|+++.|+.++.--+ ..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 455555555544311 1223566666777766655 6666666666666677777776665443211 123455555
Q ss_pred Eec
Q 040388 86 KAY 88 (226)
Q Consensus 86 ~l~ 88 (226)
.+.
T Consensus 182 ~l~ 184 (221)
T KOG3864|consen 182 HLY 184 (221)
T ss_pred Hhc
Confidence 544
No 47
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.04 E-value=0.00048 Score=59.09 Aligned_cols=55 Identities=18% Similarity=0.173 Sum_probs=31.3
Q ss_pred CccEEEecccccccc-c-CccCCCcccEEEecceec---CHHHHHHHHhcCCccceeeeeccCC
Q 040388 12 SIVVLELQFCKLESL-R-NNVTLSSLRKLCSSHVYE---DDQVIEDFVAGCPLIEYMHVFDCGG 70 (226)
Q Consensus 12 sL~~L~L~~c~~~~~-~-~~~~l~sLk~L~L~~~~~---~~~~l~~l~~~cp~Le~L~l~~c~~ 70 (226)
+-+.++|..|.+... + .+..+++|+.|+|+++.+ +.+++ .|.+.+-+|.+.+...
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF----~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAF----KGLASLLSLVLYGNNK 127 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhh----hhhHhhhHHHhhcCCc
Confidence 345677777776533 2 234577888888888776 34443 3334455555554333
No 48
>PLN03150 hypothetical protein; Provisional
Probab=95.95 E-value=0.011 Score=54.87 Aligned_cols=39 Identities=23% Similarity=0.261 Sum_probs=19.7
Q ss_pred ccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEecccc
Q 040388 119 VAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCC 158 (226)
Q Consensus 119 ~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C 158 (226)
+..+++|+.|++++|.++...+.. +..+++|+.|+++++
T Consensus 462 ~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~Ls~N 500 (623)
T PLN03150 462 LGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLNGN 500 (623)
T ss_pred HhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEECcCC
Confidence 345555555555555554443322 345555555555554
No 49
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=95.94 E-value=0.0005 Score=52.83 Aligned_cols=133 Identities=17% Similarity=0.137 Sum_probs=83.9
Q ss_pred CCCccccccCCccEEEeccccccccc-CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCce-EE--ecC
Q 040388 2 NLPQVAFNAESIVVLELQFCKLESLR-NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLK-CL--ELP 77 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~c~~~~~~-~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~-~l--~i~ 77 (226)
.+|+.+..+.+|++|++.++.+...+ ...++|.|+.|.+..+++ ..+.+=+...|.||.||+.++.--+ .+ .+.
T Consensus 47 ~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl--~~lprgfgs~p~levldltynnl~e~~lpgnff 124 (264)
T KOG0617|consen 47 VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRL--NILPRGFGSFPALEVLDLTYNNLNENSLPGNFF 124 (264)
T ss_pred ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhh--hcCccccCCCchhhhhhccccccccccCCcchh
Confidence 36888889999999999999886443 344689999998887654 1222335667999999999863211 11 111
Q ss_pred CCCCcceEEeccCCCceEE---EEecceeeEEEeCCCC-ccccccccCcccCcEEEeeccccCc
Q 040388 78 DLNNLKEFKAYDNFRLQRL---HINGVNVCSIDLASRR-TLSDINVAPCKHLEKLKLSGLYIID 137 (226)
Q Consensus 78 ~~~~Lk~L~l~~c~~l~~~---~~~~~~L~~L~~~~~~-~~~~~~~~~~~~L~~L~L~~~~it~ 137 (226)
.+..|+-|.++++. ++-+ .-...+|+.+...+.+ ...+..++.+..|++|++.++.++.
T Consensus 125 ~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 125 YMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred HHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeee
Confidence 23556666666553 1111 1134566767654431 1123345677889999999988765
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.83 E-value=0.0043 Score=51.67 Aligned_cols=151 Identities=10% Similarity=-0.008 Sum_probs=78.5
Q ss_pred cccccCCccEEEeccccccccc----CccCCCcccEEEecceec-CHHHHHHHHhcCCccceeeeeccC---CceEEecC
Q 040388 6 VAFNAESIVVLELQFCKLESLR----NNVTLSSLRKLCSSHVYE-DDQVIEDFVAGCPLIEYMHVFDCG---GLKCLELP 77 (226)
Q Consensus 6 ~~~~~~sL~~L~L~~c~~~~~~----~~~~l~sLk~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~---~l~~l~i~ 77 (226)
+++....++.|.+.+|.++... .......++.++|.++.+ +=..+..++...|.|+.|.++.+. .+.++.+.
T Consensus 40 ~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p 119 (418)
T KOG2982|consen 40 GVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLP 119 (418)
T ss_pred eeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccc
Confidence 4444455666777777765311 112456777788888777 444567777777888888776552 12322211
Q ss_pred CCCCcceEEeccCC----CceEEEEecceeeEEEeCCC-------CccccccccCcccCcEEEeeccccC-chhHHHHHh
Q 040388 78 DLNNLKEFKAYDNF----RLQRLHINGVNVCSIDLASR-------RTLSDINVAPCKHLEKLKLSGLYII-DECPSNQVS 145 (226)
Q Consensus 78 ~~~~Lk~L~l~~c~----~l~~~~~~~~~L~~L~~~~~-------~~~~~~~~~~~~~L~~L~L~~~~it-~~~~~~l~~ 145 (226)
..+|+.+.+.+-. ..+...-+.|.++.|++... +..+.-. --+.++.++..+|... +.....+..
T Consensus 120 -~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~--~s~~v~tlh~~~c~~~~w~~~~~l~r 196 (418)
T KOG2982|consen 120 -LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIED--WSTEVLTLHQLPCLEQLWLNKNKLSR 196 (418)
T ss_pred -ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccc--cchhhhhhhcCCcHHHHHHHHHhHHh
Confidence 2466666665543 11222224455555542110 0011000 1123455555555321 111245667
Q ss_pred cCCCCcEEeccccc
Q 040388 146 KLQFLEYLHIDCCM 159 (226)
Q Consensus 146 ~~~~Le~L~l~~C~ 159 (226)
-||+++.+.++.|+
T Consensus 197 ~Fpnv~sv~v~e~P 210 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGP 210 (418)
T ss_pred hcccchheeeecCc
Confidence 88888888888773
No 51
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.82 E-value=0.0037 Score=50.74 Aligned_cols=98 Identities=20% Similarity=0.221 Sum_probs=65.3
Q ss_pred cCCccEEEecccccccccCccCCCcccEEEecceec-CHHHHHHHHhcCCccceeeeeccCC--ceEE-ecCCCCCcceE
Q 040388 10 AESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYE-DDQVIEDFVAGCPLIEYMHVFDCGG--LKCL-ELPDLNNLKEF 85 (226)
Q Consensus 10 ~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~--l~~l-~i~~~~~Lk~L 85 (226)
...|+.|++.++.+........+|.||+|.++.++. ....+.-++..||+|.+|.++.++. +..+ .+..+.+|+.|
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL 121 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence 345667777777766444555788999999999855 3445666788889999999988742 2222 12345778888
Q ss_pred EeccCCCce------EEEEecceeeEEE
Q 040388 86 KAYDNFRLQ------RLHINGVNVCSID 107 (226)
Q Consensus 86 ~l~~c~~l~------~~~~~~~~L~~L~ 107 (226)
+++.|...+ .++.-.|+|++++
T Consensus 122 dl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 122 DLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hcccCCccccccHHHHHHHHhhhhcccc
Confidence 888886221 2233457777777
No 52
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.76 E-value=0.0031 Score=51.22 Aligned_cols=103 Identities=19% Similarity=0.210 Sum_probs=55.8
Q ss_pred CCccceeeeeccCCceEEecCCCCCcceEEeccCC-----CceEEEEecceeeEEEeCCC-Ccc--ccccccCcccCcEE
Q 040388 57 CPLIEYMHVFDCGGLKCLELPDLNNLKEFKAYDNF-----RLQRLHINGVNVCSIDLASR-RTL--SDINVAPCKHLEKL 128 (226)
Q Consensus 57 cp~Le~L~l~~c~~l~~l~i~~~~~Lk~L~l~~c~-----~l~~~~~~~~~L~~L~~~~~-~~~--~~~~~~~~~~L~~L 128 (226)
.-.|+.|++.++.-.......-+|+||+|.++.+. ++.-....+|+|+++..+|. ..+ ..-.+....+|..|
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL 121 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence 34455555555533333344456777777777763 23333445677777774442 111 01123455667777
Q ss_pred EeeccccCc--hhHHHHHhcCCCCcEEeccccc
Q 040388 129 KLSGLYIID--ECPSNQVSKLQFLEYLHIDCCM 159 (226)
Q Consensus 129 ~L~~~~it~--~~~~~l~~~~~~Le~L~l~~C~ 159 (226)
++..|..+. +.=..++.-.|+|..|+-..+.
T Consensus 122 dl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 122 DLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 777766543 1123456667777777665553
No 53
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.74 E-value=0.0097 Score=49.75 Aligned_cols=60 Identities=13% Similarity=0.089 Sum_probs=37.6
Q ss_pred HHHHHHHhcCCccceeeeeccCC----------ceEEecCCCCCcceEEeccCC--CceEEEEecceeeEEE
Q 040388 48 QVIEDFVAGCPLIEYMHVFDCGG----------LKCLELPDLNNLKEFKAYDNF--RLQRLHINGVNVCSID 107 (226)
Q Consensus 48 ~~l~~l~~~cp~Le~L~l~~c~~----------l~~l~i~~~~~Lk~L~l~~c~--~l~~~~~~~~~L~~L~ 107 (226)
..+.+++.-|..|..|..+...+ +-.++++.+.+|+.++++.|. ++.++...-|-|+++.
T Consensus 172 ~d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~ 243 (490)
T KOG1259|consen 172 YDFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTIC 243 (490)
T ss_pred cchHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheee
Confidence 34666777777788887776532 222334445778888888776 5555555556666665
No 54
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.71 E-value=0.0059 Score=50.29 Aligned_cols=128 Identities=17% Similarity=0.145 Sum_probs=87.5
Q ss_pred cCCCcccEEEecceec---CHHHHHHHHhcCCccceeeeeccCC-----------ceEE----ecCCCCCcceEEeccCC
Q 040388 30 VTLSSLRKLCSSHVYE---DDQVIEDFVAGCPLIEYMHVFDCGG-----------LKCL----ELPDLNNLKEFKAYDNF 91 (226)
Q Consensus 30 ~~l~sLk~L~L~~~~~---~~~~l~~l~~~cp~Le~L~l~~c~~-----------l~~l----~i~~~~~Lk~L~l~~c~ 91 (226)
.+||.|++.+|+.+-+ ....+..+++....|++|.+.+|.- +.++ .+.+-|.|+.+....+.
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 4799999999999988 5666788899999999999999831 1111 23345888888777664
Q ss_pred CceEEE-------Ee-cceeeEEE--eCCCC-c----cccccccCcccCcEEEeeccccCchh---HHHHHhcCCCCcEE
Q 040388 92 RLQRLH-------IN-GVNVCSID--LASRR-T----LSDINVAPCKHLEKLKLSGLYIIDEC---PSNQVSKLQFLEYL 153 (226)
Q Consensus 92 ~l~~~~-------~~-~~~L~~L~--~~~~~-~----~~~~~~~~~~~L~~L~L~~~~it~~~---~~~l~~~~~~Le~L 153 (226)
+.... .. -.+|+.+. ++|.. . ..-..+..|++|+.|++..|.+|... +....+..+.|..|
T Consensus 169 -lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 169 -LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred -hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 11100 01 13566666 45531 1 11123468899999999999887643 34556777889999
Q ss_pred ecccc
Q 040388 154 HIDCC 158 (226)
Q Consensus 154 ~l~~C 158 (226)
.+.+|
T Consensus 248 ~lnDC 252 (388)
T COG5238 248 RLNDC 252 (388)
T ss_pred cccch
Confidence 99999
No 55
>PLN03150 hypothetical protein; Provisional
Probab=95.70 E-value=0.0088 Score=55.45 Aligned_cols=79 Identities=16% Similarity=0.016 Sum_probs=57.1
Q ss_pred CccEEEecccccc-cc-cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCc--eEEecCCCCCcceEEe
Q 040388 12 SIVVLELQFCKLE-SL-RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGL--KCLELPDLNNLKEFKA 87 (226)
Q Consensus 12 sL~~L~L~~c~~~-~~-~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l--~~l~i~~~~~Lk~L~l 87 (226)
.++.|+|++|.+. .. .....+++|+.|+|+++.+.+. +...+..++.|+.|++++|.-- ..-.++++++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 3788899988875 22 2334689999999999887543 3334678899999999987432 1223567889999999
Q ss_pred ccCC
Q 040388 88 YDNF 91 (226)
Q Consensus 88 ~~c~ 91 (226)
++|.
T Consensus 498 s~N~ 501 (623)
T PLN03150 498 NGNS 501 (623)
T ss_pred cCCc
Confidence 9885
No 56
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.69 E-value=0.0061 Score=53.01 Aligned_cols=150 Identities=20% Similarity=0.189 Sum_probs=86.5
Q ss_pred CCCccccccC-CccEEEeccccccccc-CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEec--C
Q 040388 2 NLPQVAFNAE-SIVVLELQFCKLESLR-NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLEL--P 77 (226)
Q Consensus 2 ~lP~~~~~~~-sL~~L~L~~c~~~~~~-~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~i--~ 77 (226)
.+|......+ +|+.|+++++.+...+ ....++.|+.|++.++.+++ +.......+.|+.|+++++ .+..+.- .
T Consensus 130 ~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~ 206 (394)
T COG4886 130 DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNNLDLSGN-KISDLPPEIE 206 (394)
T ss_pred cCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhh--hhhhhhhhhhhhheeccCC-ccccCchhhh
Confidence 4566666664 8999999999887532 34568999999999987632 3333336788899988886 2322221 1
Q ss_pred CCCCcceEEeccCCCceEE--EEecceeeEEEeCC-CCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEe
Q 040388 78 DLNNLKEFKAYDNFRLQRL--HINGVNVCSIDLAS-RRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLH 154 (226)
Q Consensus 78 ~~~~Lk~L~l~~c~~l~~~--~~~~~~L~~L~~~~-~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~ 154 (226)
....|+++.++++...+.. .-...++..+...+ .........+.+++++.|+++++.+++.. . +....+++.|+
T Consensus 207 ~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~--~-~~~~~~l~~L~ 283 (394)
T COG4886 207 LLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSIS--S-LGSLTNLRELD 283 (394)
T ss_pred hhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccccccccc--c-ccccCccCEEe
Confidence 2234777777776311111 11223333333111 11111123455666777777777776532 2 45667777777
Q ss_pred ccc
Q 040388 155 IDC 157 (226)
Q Consensus 155 l~~ 157 (226)
+++
T Consensus 284 ~s~ 286 (394)
T COG4886 284 LSG 286 (394)
T ss_pred ccC
Confidence 765
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.37 E-value=0.044 Score=43.25 Aligned_cols=76 Identities=20% Similarity=0.159 Sum_probs=53.8
Q ss_pred cccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccceeec-----cCccccceeEEcc----------e-EE
Q 040388 118 NVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAK-----ISSRCLKKLFFKG----------E-FM 181 (226)
Q Consensus 118 ~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~-----i~~~~L~~L~l~~----------~-~~ 181 (226)
.+...++|..|.+..|.|+.-. ..+...+|+|..|.+.+ ..++.+. .++++|+.|.+.+ + ..
T Consensus 59 ~lp~l~rL~tLll~nNrIt~I~-p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl 136 (233)
T KOG1644|consen 59 NLPHLPRLHTLLLNNNRITRID-PDLDTFLPNLKTLILTN-NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVL 136 (233)
T ss_pred cCCCccccceEEecCCcceeec-cchhhhccccceEEecC-cchhhhhhcchhccCCccceeeecCCchhcccCceeEEE
Confidence 4567788888999888887744 24556678888888887 3333331 2457888888876 1 45
Q ss_pred EeCCCcceEEEeec
Q 040388 182 LDTSNLSTFEYQGN 195 (226)
Q Consensus 182 i~~p~L~sl~~~g~ 195 (226)
...|+|+.|.|++-
T Consensus 137 ~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 137 YKLPSLRTLDFQKV 150 (233)
T ss_pred EecCcceEeehhhh
Confidence 77899999998753
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.28 E-value=0.047 Score=43.10 Aligned_cols=96 Identities=16% Similarity=0.115 Sum_probs=52.3
Q ss_pred CccEEEecccccccccCccCCCcccEEEecceecC--HHHHHHHHhcCCccceeeeeccCC--ceEE-ecCCCCCcceEE
Q 040388 12 SIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYED--DQVIEDFVAGCPLIEYMHVFDCGG--LKCL-ELPDLNNLKEFK 86 (226)
Q Consensus 12 sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~--~~~l~~l~~~cp~Le~L~l~~c~~--l~~l-~i~~~~~Lk~L~ 86 (226)
....++|..+.+........++.|++|.|..+.++ +..+. .-.|+|..|.+.++.- +..+ .+.+||+|+.|.
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~---~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLD---TFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchh---hhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 44556666665543334446777788888777762 22222 2346677777776532 1111 234577777777
Q ss_pred eccCC-----CceE-EEEecceeeEEEeCC
Q 040388 87 AYDNF-----RLQR-LHINGVNVCSIDLAS 110 (226)
Q Consensus 87 l~~c~-----~l~~-~~~~~~~L~~L~~~~ 110 (226)
+-++. +... +.-..|+|+.|++.+
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 76664 2222 222356666666543
No 59
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=94.78 E-value=0.031 Score=53.81 Aligned_cols=80 Identities=19% Similarity=0.250 Sum_probs=46.4
Q ss_pred CCccEEEecccccccccCccCCCcccEEEecceec-CHHHHHHHHhcCCccceeeeeccCCceEE--ecCCCCCcceEEe
Q 040388 11 ESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYE-DDQVIEDFVAGCPLIEYMHVFDCGGLKCL--ELPDLNNLKEFKA 87 (226)
Q Consensus 11 ~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~l~~l--~i~~~~~Lk~L~l 87 (226)
.+.+...+.++.+........+|.|++|-+..+.. -......++..-|.|..||+++|..+..+ .|+++-+||.|++
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence 34555666655554334555666777777766641 11111222445677777777777666555 3556667777777
Q ss_pred ccC
Q 040388 88 YDN 90 (226)
Q Consensus 88 ~~c 90 (226)
++.
T Consensus 603 ~~t 605 (889)
T KOG4658|consen 603 SDT 605 (889)
T ss_pred cCC
Confidence 665
No 60
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.59 E-value=0.0021 Score=52.98 Aligned_cols=78 Identities=18% Similarity=0.164 Sum_probs=46.3
Q ss_pred CCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccC--CceEE-ecCCCCCcceEEe
Q 040388 11 ESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCG--GLKCL-ELPDLNNLKEFKA 87 (226)
Q Consensus 11 ~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~--~l~~l-~i~~~~~Lk~L~l 87 (226)
.+.+.|+.-||.+.-......+|.|+.|+|+-+.++ .+.. +..|..|++|.|+.+. .+..+ .+.++|+|+.|.+
T Consensus 19 ~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIs--sL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKIS--SLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHhhhhcccCCCccHHHHHHhcccceeEEeeccccc--cchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 345667777777763334446788888888777651 1222 4567778888776542 22111 2345677777777
Q ss_pred ccCC
Q 040388 88 YDNF 91 (226)
Q Consensus 88 ~~c~ 91 (226)
..+.
T Consensus 96 ~ENP 99 (388)
T KOG2123|consen 96 DENP 99 (388)
T ss_pred ccCC
Confidence 6543
No 61
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=94.56 E-value=0.0039 Score=59.80 Aligned_cols=83 Identities=18% Similarity=0.193 Sum_probs=54.4
Q ss_pred Cccccc-cCCccEEEeccccc-ccccCcc-CCCcccEEEecceecC--HHHHHHHHhcCCccceeeeeccCCceEE-ecC
Q 040388 4 PQVAFN-AESIVVLELQFCKL-ESLRNNV-TLSSLRKLCSSHVYED--DQVIEDFVAGCPLIEYMHVFDCGGLKCL-ELP 77 (226)
Q Consensus 4 P~~~~~-~~sL~~L~L~~c~~-~~~~~~~-~l~sLk~L~L~~~~~~--~~~l~~l~~~cp~Le~L~l~~c~~l~~l-~i~ 77 (226)
+..+|. .+.|++|+|++|.- ...|..+ .+-+|++|+|++..+. +.++.+ ...|.+|++.....+..+ .+.
T Consensus 563 s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~----Lk~L~~Lnl~~~~~l~~~~~i~ 638 (889)
T KOG4658|consen 563 SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGN----LKKLIYLNLEVTGRLESIPGIL 638 (889)
T ss_pred CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHH----HHhhheeccccccccccccchh
Confidence 444454 79999999999863 4344444 5889999999887663 333333 356888888877665444 122
Q ss_pred -CCCCcceEEeccC
Q 040388 78 -DLNNLKEFKAYDN 90 (226)
Q Consensus 78 -~~~~Lk~L~l~~c 90 (226)
.+++|++|.+..-
T Consensus 639 ~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 639 LELQSLRVLRLPRS 652 (889)
T ss_pred hhcccccEEEeecc
Confidence 2567777776543
No 62
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=94.08 E-value=0.0027 Score=56.95 Aligned_cols=130 Identities=18% Similarity=0.284 Sum_probs=75.8
Q ss_pred CCCccccccCCccEEEecccccccccCccCCCcccEEEecceecC--HHHHHHHHhcCCccceeeeeccCCceEE--ecC
Q 040388 2 NLPQVAFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYED--DQVIEDFVAGCPLIEYMHVFDCGGLKCL--ELP 77 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~--~~~l~~l~~~cp~Le~L~l~~c~~l~~l--~i~ 77 (226)
.+|..+.++..|+.|+|+.+.+...+...++--||.|.++++.++ .+. +..-+.|.+|+.+.|. +..+ .+.
T Consensus 112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~----ig~~~tl~~ld~s~ne-i~slpsql~ 186 (722)
T KOG0532|consen 112 TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEE----IGLLPTLAHLDVSKNE-IQSLPSQLG 186 (722)
T ss_pred ecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcc----cccchhHHHhhhhhhh-hhhchHHhh
Confidence 367788888888889998888776556667777888888888761 122 2244566777776663 2222 234
Q ss_pred CCCCcceEEeccCCCceEEE--EecceeeEEE-eCCCCccccccccCcccCcEEEeeccccCc
Q 040388 78 DLNNLKEFKAYDNFRLQRLH--INGVNVCSID-LASRRTLSDINVAPCKHLEKLKLSGLYIID 137 (226)
Q Consensus 78 ~~~~Lk~L~l~~c~~l~~~~--~~~~~L~~L~-~~~~~~~~~~~~~~~~~L~~L~L~~~~it~ 137 (226)
++.+|+.+.+..+. +..+. ...-.|..|+ .++.....++.+...+.|++|-|..|.+..
T Consensus 187 ~l~slr~l~vrRn~-l~~lp~El~~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 187 YLTSLRDLNVRRNH-LEDLPEELCSLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred hHHHHHHHHHhhhh-hhhCCHHHhCCceeeeecccCceeecchhhhhhhhheeeeeccCCCCC
Confidence 45566666666553 11110 0122355555 233322234555666677777777665543
No 63
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=93.56 E-value=0.016 Score=50.97 Aligned_cols=58 Identities=22% Similarity=0.118 Sum_probs=26.2
Q ss_pred CCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEecCCCCCcceEEeccC
Q 040388 31 TLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLELPDLNNLKEFKAYDN 90 (226)
Q Consensus 31 ~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~i~~~~~Lk~L~l~~c 90 (226)
.+.+|..|++..+.+ ..+...+..+++|+.|+++++.--+.-.+..++.|+.|++.+|
T Consensus 93 ~~~~l~~l~l~~n~i--~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKI--EKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGN 150 (414)
T ss_pred cccceeeeeccccch--hhcccchhhhhcchheeccccccccccchhhccchhhheeccC
Confidence 455555666655543 1122224455566666665542111112223344555555555
No 64
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=92.58 E-value=0.12 Score=26.43 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=13.7
Q ss_pred CCcccEEEecceec-CHHHHHHHH
Q 040388 32 LSSLRKLCSSHVYE-DDQVIEDFV 54 (226)
Q Consensus 32 l~sLk~L~L~~~~~-~~~~l~~l~ 54 (226)
+|+|+.|+|++|.- +|.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 35666666666653 666665543
No 65
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.57 E-value=0.17 Score=25.25 Aligned_cols=22 Identities=18% Similarity=0.040 Sum_probs=13.3
Q ss_pred CCcccEEEecceecCHHHHHHH
Q 040388 32 LSSLRKLCSSHVYEDDQVIEDF 53 (226)
Q Consensus 32 l~sLk~L~L~~~~~~~~~l~~l 53 (226)
+++|++|+|++|.+++++++.+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 3567777777777766666554
No 66
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.87 E-value=0.057 Score=42.53 Aligned_cols=60 Identities=15% Similarity=0.263 Sum_probs=35.7
Q ss_pred ccCcccCcEEEeeccc-cCchhHHHHHhcCCCCcEEeccccccceeeccC----ccccceeEEcc
Q 040388 119 VAPCKHLEKLKLSGLY-IIDECPSNQVSKLQFLEYLHIDCCMKLRSAKIS----SRCLKKLFFKG 178 (226)
Q Consensus 119 ~~~~~~L~~L~L~~~~-it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~i~----~~~L~~L~l~~ 178 (226)
+..++.++.|.+..|. +.|..+..+....++|+.|++++|+.++.-.+- ..+|++|.+.+
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 3455666666666665 333345555566677888888877776654332 24566666554
No 67
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=90.78 E-value=0.1 Score=45.97 Aligned_cols=81 Identities=20% Similarity=0.077 Sum_probs=54.7
Q ss_pred ccccCCccEEEecccccccccC-ccCCCcccEEEecceec-CHHHHHHHHhcCCccceeeeeccCCceEEecCCCCCcce
Q 040388 7 AFNAESIVVLELQFCKLESLRN-NVTLSSLRKLCSSHVYE-DDQVIEDFVAGCPLIEYMHVFDCGGLKCLELPDLNNLKE 84 (226)
Q Consensus 7 ~~~~~sL~~L~L~~c~~~~~~~-~~~l~sLk~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~i~~~~~Lk~ 84 (226)
+...++|+.|++..+.+..... ...+++|+.|+++.+.+ +-..+ ..++.|+.|++.++.--..=.+..+.+|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l----~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGL----STLTLLKELNLSGNLISDISGLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccch----hhccchhhheeccCcchhccCCccchhhhc
Confidence 4556889999999998875434 45689999999999987 33443 334558999988873211112233567777
Q ss_pred EEeccCC
Q 040388 85 FKAYDNF 91 (226)
Q Consensus 85 L~l~~c~ 91 (226)
++++++.
T Consensus 167 l~l~~n~ 173 (414)
T KOG0531|consen 167 LDLSYNR 173 (414)
T ss_pred ccCCcch
Confidence 7777764
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=90.27 E-value=0.13 Score=36.96 Aligned_cols=82 Identities=13% Similarity=0.176 Sum_probs=38.2
Q ss_pred CCccccc-cCCccEEEeccccccc-ccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe---cC
Q 040388 3 LPQVAFN-AESIVVLELQFCKLES-LRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---LP 77 (226)
Q Consensus 3 lP~~~~~-~~sL~~L~L~~c~~~~-~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---i~ 77 (226)
+|+.+|. |++|+.+.+...-... ......+++|+.+.+.+. +.. .-.....+|+.|+.+.+.+ ++..+. ..
T Consensus 3 i~~~~F~~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~-~~~-i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~ 78 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPNTIKKIGENAFSNCTSLKSINFPNN-LTS-IGDNAFSNCKSLESITFPN--NLKSIGDNAFS 78 (129)
T ss_dssp E-TTTTTT-TT--EEEETST--EE-TTTTTT-TT-SEEEESST-TSC-E-TTTTTT-TT-EEEEETS--TT-EE-TTTTT
T ss_pred ECHHHHhCCCCCCEEEECCCeeEeChhhccccccccccccccc-ccc-cceeeeecccccccccccc--ccccccccccc
Confidence 5666664 6699999987532221 123345678888888763 210 0112366777788887754 333332 23
Q ss_pred CCCCcceEEec
Q 040388 78 DLNNLKEFKAY 88 (226)
Q Consensus 78 ~~~~Lk~L~l~ 88 (226)
.|++|+.+.+.
T Consensus 79 ~~~~l~~i~~~ 89 (129)
T PF13306_consen 79 NCTNLKNIDIP 89 (129)
T ss_dssp T-TTECEEEET
T ss_pred ccccccccccC
Confidence 35666666664
No 69
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=88.97 E-value=0.024 Score=52.61 Aligned_cols=55 Identities=16% Similarity=0.094 Sum_probs=30.0
Q ss_pred CCcccEEEecceecCHHHHHHHHhcCCccceeeeeccC--CceEEecCCCCCcceEEeccC
Q 040388 32 LSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCG--GLKCLELPDLNNLKEFKAYDN 90 (226)
Q Consensus 32 l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~--~l~~l~i~~~~~Lk~L~l~~c 90 (226)
+|.|+.|+|++|.+++-. .+..||.|.+|||+++. .+-.+...+|. |..|.+.++
T Consensus 186 l~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN 242 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN 242 (1096)
T ss_pred HHHhhhhccchhhhhhhH---HHHhcccccccccccchhccccccchhhhh-heeeeeccc
Confidence 466777777777653222 34566777777776541 22233334443 555555555
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.96 E-value=0.015 Score=48.09 Aligned_cols=77 Identities=19% Similarity=0.154 Sum_probs=50.7
Q ss_pred cCCccEEEecccccccccCccCCCcccEEEecceec-CHHHHHHHHhcCCccceeeeeccCC-------ceEEecCCCCC
Q 040388 10 AESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYE-DDQVIEDFVAGCPLIEYMHVFDCGG-------LKCLELPDLNN 81 (226)
Q Consensus 10 ~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~-------l~~l~i~~~~~ 81 (226)
-+.|++|.|+-|++........|..||.|.|+.+.+ +-+.+.. +.+.|+|..|.|..++= .+..-+.-+|+
T Consensus 40 Mp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~Y-LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPn 118 (388)
T KOG2123|consen 40 MPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEY-LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPN 118 (388)
T ss_pred cccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHH-HhcCchhhhHhhccCCcccccchhHHHHHHHHccc
Confidence 356888888888877555556788888888888887 4444444 46778888888876531 11111223578
Q ss_pred cceEEe
Q 040388 82 LKEFKA 87 (226)
Q Consensus 82 Lk~L~l 87 (226)
||+|+=
T Consensus 119 LkKLDn 124 (388)
T KOG2123|consen 119 LKKLDN 124 (388)
T ss_pred chhccC
Confidence 887763
No 71
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=88.93 E-value=0.03 Score=50.52 Aligned_cols=46 Identities=20% Similarity=0.182 Sum_probs=23.7
Q ss_pred cCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccceeeccCcc
Q 040388 120 APCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAKISSR 169 (226)
Q Consensus 120 ~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~i~~~ 169 (226)
++..+|+.|.+..|++.+. +.++. +-.|.+|+++ |.++..+.+...
T Consensus 186 ~~l~slr~l~vrRn~l~~l-p~El~--~LpLi~lDfS-cNkis~iPv~fr 231 (722)
T KOG0532|consen 186 GYLTSLRDLNVRRNHLEDL-PEELC--SLPLIRLDFS-CNKISYLPVDFR 231 (722)
T ss_pred hhHHHHHHHHHhhhhhhhC-CHHHh--CCceeeeecc-cCceeecchhhh
Confidence 4455556666655554332 23332 3445666665 366666665543
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=85.64 E-value=0.67 Score=21.15 Aligned_cols=13 Identities=23% Similarity=0.368 Sum_probs=6.3
Q ss_pred CccEEEecccccc
Q 040388 12 SIVVLELQFCKLE 24 (226)
Q Consensus 12 sL~~L~L~~c~~~ 24 (226)
+|++|++++|.+.
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 5666666666643
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=83.42 E-value=1 Score=21.93 Aligned_cols=14 Identities=29% Similarity=0.275 Sum_probs=10.5
Q ss_pred CccEEEeccccccc
Q 040388 12 SIVVLELQFCKLES 25 (226)
Q Consensus 12 sL~~L~L~~c~~~~ 25 (226)
+|++|++++|.+..
T Consensus 1 ~L~~Ldls~n~l~~ 14 (22)
T PF00560_consen 1 NLEYLDLSGNNLTS 14 (22)
T ss_dssp TESEEEETSSEESE
T ss_pred CccEEECCCCcCEe
Confidence 47888888887663
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=83.14 E-value=1.3 Score=31.62 Aligned_cols=12 Identities=17% Similarity=0.282 Sum_probs=4.4
Q ss_pred hcCCccceeeee
Q 040388 55 AGCPLIEYMHVF 66 (226)
Q Consensus 55 ~~cp~Le~L~l~ 66 (226)
.+|++|+.+.+.
T Consensus 9 ~~~~~l~~i~~~ 20 (129)
T PF13306_consen 9 YNCSNLESITFP 20 (129)
T ss_dssp TT-TT--EEEET
T ss_pred hCCCCCCEEEEC
Confidence 445555555544
No 75
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=82.83 E-value=1.6 Score=22.67 Aligned_cols=22 Identities=27% Similarity=0.185 Sum_probs=17.0
Q ss_pred CcccEEEecceecCHHHHHHHH
Q 040388 33 SSLRKLCSSHVYEDDQVIEDFV 54 (226)
Q Consensus 33 ~sLk~L~L~~~~~~~~~l~~l~ 54 (226)
++|++|+|++|.+.+++...+.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHH
Confidence 5788889988888777766654
No 76
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=73.17 E-value=1.5 Score=38.31 Aligned_cols=46 Identities=22% Similarity=0.113 Sum_probs=27.6
Q ss_pred cccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccceee
Q 040388 118 NVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSA 164 (226)
Q Consensus 118 ~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l 164 (226)
.++..++|++|+|++|+|+.-.+.. +.+++.+-+|.+.+...++.+
T Consensus 86 aF~~l~~LRrLdLS~N~Is~I~p~A-F~GL~~l~~Lvlyg~NkI~~l 131 (498)
T KOG4237|consen 86 AFKTLHRLRRLDLSKNNISFIAPDA-FKGLASLLSLVLYGNNKITDL 131 (498)
T ss_pred hccchhhhceecccccchhhcChHh-hhhhHhhhHHHhhcCCchhhh
Confidence 4567777888888887776544322 355666666655554444443
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=52.77 E-value=11 Score=18.72 Aligned_cols=15 Identities=27% Similarity=0.315 Sum_probs=10.5
Q ss_pred ccCcEEEeeccccCc
Q 040388 123 KHLEKLKLSGLYIID 137 (226)
Q Consensus 123 ~~L~~L~L~~~~it~ 137 (226)
++|++|++.+|.++.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 467777787777654
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=52.77 E-value=11 Score=18.72 Aligned_cols=15 Identities=27% Similarity=0.315 Sum_probs=10.5
Q ss_pred ccCcEEEeeccccCc
Q 040388 123 KHLEKLKLSGLYIID 137 (226)
Q Consensus 123 ~~L~~L~L~~~~it~ 137 (226)
++|++|++.+|.++.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 467777787777654
No 79
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=52.30 E-value=5.3 Score=36.30 Aligned_cols=39 Identities=18% Similarity=0.159 Sum_probs=18.9
Q ss_pred HHHHhcCCccceeeeeccC--CceEE---ecCCCCCcceEEeccC
Q 040388 51 EDFVAGCPLIEYMHVFDCG--GLKCL---ELPDLNNLKEFKAYDN 90 (226)
Q Consensus 51 ~~l~~~cp~Le~L~l~~c~--~l~~l---~i~~~~~Lk~L~l~~c 90 (226)
+.+..+.|.++.+.++++. .|..+ .-. .|+|+.|+++++
T Consensus 211 ~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~-apklk~L~LS~N 254 (585)
T KOG3763|consen 211 KHIEENFPEILSLSLSNNRLYHLDALSSLSQI-APKLKTLDLSHN 254 (585)
T ss_pred HHhhcCCcceeeeecccchhhchhhhhHHHHh-cchhheeecccc
Confidence 4445556666666665542 12111 111 256666666655
No 80
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=52.19 E-value=3.5 Score=30.93 Aligned_cols=78 Identities=17% Similarity=0.153 Sum_probs=41.6
Q ss_pred CccEEEecccccccc----cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE--ecCCCCCcceE
Q 040388 12 SIVVLELQFCKLESL----RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL--ELPDLNNLKEF 85 (226)
Q Consensus 12 sL~~L~L~~c~~~~~----~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l--~i~~~~~Lk~L 85 (226)
.+-.++|+.|.+... ..-..-..|++.+|+++.+.+ .-+.+....|-++.|.+.++. +..+ .+..+|.|+.+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSL 105 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhc
Confidence 345567777764411 111244566667776665411 113455566667777776652 1111 13345777777
Q ss_pred EeccCC
Q 040388 86 KAYDNF 91 (226)
Q Consensus 86 ~l~~c~ 91 (226)
++..+.
T Consensus 106 Nl~~N~ 111 (177)
T KOG4579|consen 106 NLRFNP 111 (177)
T ss_pred ccccCc
Confidence 777664
No 81
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=42.20 E-value=23 Score=32.44 Aligned_cols=60 Identities=13% Similarity=0.072 Sum_probs=42.3
Q ss_pred CCCcccEEEecceec-CHHHHHHHHhcCCccceeeeeccCCc----eEE-ecCCCCCcceEEeccCC
Q 040388 31 TLSSLRKLCSSHVYE-DDQVIEDFVAGCPLIEYMHVFDCGGL----KCL-ELPDLNNLKEFKAYDNF 91 (226)
Q Consensus 31 ~l~sLk~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~l----~~l-~i~~~~~Lk~L~l~~c~ 91 (226)
++|.+..++|+++++ .-+.+..+....|+|..|+|+++... ..+ .+.+ ..|++|-+.++.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNP 281 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNP 281 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCc
Confidence 678888888888888 67778888888888888888887221 111 2333 557777777764
No 82
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=34.99 E-value=30 Score=17.65 Aligned_cols=14 Identities=43% Similarity=0.396 Sum_probs=9.1
Q ss_pred ccCcEEEeeccccC
Q 040388 123 KHLEKLKLSGLYII 136 (226)
Q Consensus 123 ~~L~~L~L~~~~it 136 (226)
.+|+.|++.+|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45677777777664
No 83
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=33.52 E-value=22 Score=21.17 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=10.7
Q ss_pred eecc-ccccceeeeEe
Q 040388 198 SFSS-NALALSQIILF 212 (226)
Q Consensus 198 ~~~~-~~~~l~~~~~~ 212 (226)
.+.+ |++.|++++|.
T Consensus 35 ~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 35 KYILENAPVLKKMTIS 50 (51)
T ss_pred HHHHhhhhhhcEEEEE
Confidence 4445 88888888875
No 84
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=33.26 E-value=42 Score=27.12 Aligned_cols=12 Identities=17% Similarity=0.307 Sum_probs=7.0
Q ss_pred cCCccceeeeec
Q 040388 56 GCPLIEYMHVFD 67 (226)
Q Consensus 56 ~cp~Le~L~l~~ 67 (226)
+|.++|.-|+++
T Consensus 169 ~ca~lerADl~g 180 (302)
T KOG1665|consen 169 QCAKLERADLEG 180 (302)
T ss_pred hhhhhccccccc
Confidence 455666666653
No 85
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=29.39 E-value=36 Score=21.55 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=11.7
Q ss_pred eecc-ccccceeeeEeeec
Q 040388 198 SFSS-NALALSQIILFLST 215 (226)
Q Consensus 198 ~~~~-~~~~l~~~~~~~~~ 215 (226)
.+++ +++.|+++.|...+
T Consensus 26 ~~il~~a~~Lk~~~i~~~~ 44 (72)
T smart00579 26 KYFLENAPCLKKLTISVET 44 (72)
T ss_pred HHHHhcchhheEEEEEeec
Confidence 3444 77777777776654
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=20.48 E-value=57 Score=16.71 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=10.2
Q ss_pred ccCcEEEeeccccCc
Q 040388 123 KHLEKLKLSGLYIID 137 (226)
Q Consensus 123 ~~L~~L~L~~~~it~ 137 (226)
++|+.|++++|.++.
T Consensus 2 ~~L~~L~vs~N~Lt~ 16 (26)
T smart00364 2 PSLKELNVSNNQLTS 16 (26)
T ss_pred cccceeecCCCcccc
Confidence 357777777777654
Done!