Query 040388
Match_columns 226
No_of_seqs 178 out of 1331
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 12:35:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040388.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040388hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ast_B S-phase kinase-associat 99.5 6E-15 2.1E-19 123.5 3.6 185 11-195 70-282 (336)
2 4fcg_A Uncharacterized protein 99.5 3.8E-14 1.3E-18 119.1 6.9 58 119-178 202-262 (328)
3 4fmz_A Internalin; leucine ric 99.4 3.5E-13 1.2E-17 113.3 9.7 198 7-212 62-319 (347)
4 2ast_B S-phase kinase-associat 99.4 1.8E-14 6.3E-19 120.5 1.2 173 4-178 86-281 (336)
5 4fcg_A Uncharacterized protein 99.4 1.2E-13 4E-18 116.1 3.9 173 2-178 95-286 (328)
6 4fmz_A Internalin; leucine ric 99.4 1.2E-12 4E-17 110.1 10.0 79 9-91 42-121 (347)
7 2p1m_B Transport inhibitor res 99.4 2.8E-13 9.4E-18 121.5 6.4 168 9-176 103-345 (594)
8 3zyi_A Leucine-rich repeat-con 99.4 8.8E-13 3E-17 115.1 7.7 116 78-195 169-300 (452)
9 3bz5_A Internalin-J, INLJ; leu 99.4 2.4E-12 8.1E-17 112.9 10.3 140 7-157 60-200 (457)
10 3rgz_A Protein brassinosteroid 99.4 1E-12 3.4E-17 122.0 8.2 154 4-159 93-258 (768)
11 1h6u_A Internalin H; cell adhe 99.3 1.7E-12 5.7E-17 108.0 8.0 56 10-68 40-95 (308)
12 3oja_A Leucine-rich immune mol 99.3 1.5E-12 5.3E-17 115.0 8.2 186 3-196 22-225 (487)
13 3ogk_B Coronatine-insensitive 99.3 1.4E-12 4.8E-17 117.0 7.8 190 6-196 288-524 (592)
14 3zyj_A Leucine-rich repeat-con 99.3 1.2E-12 4.1E-17 113.9 7.0 182 11-195 64-289 (440)
15 3o6n_A APL1; leucine-rich repe 99.3 6.2E-12 2.1E-16 107.5 10.0 62 6-68 88-151 (390)
16 3o53_A Protein LRIM1, AGAP0063 99.3 4E-12 1.4E-16 106.0 8.4 180 9-196 32-225 (317)
17 3v47_A TOLL-like receptor 5B a 99.3 1.8E-12 6.1E-17 112.8 6.3 63 6-68 74-139 (455)
18 1o6v_A Internalin A; bacterial 99.3 1.1E-11 3.9E-16 108.5 11.4 80 7-90 64-144 (466)
19 1h6u_A Internalin H; cell adhe 99.3 9.3E-12 3.2E-16 103.5 10.2 164 6-178 58-226 (308)
20 3rgz_A Protein brassinosteroid 99.3 2.9E-12 9.8E-17 119.0 7.6 152 3-158 116-279 (768)
21 3ogk_B Coronatine-insensitive 99.3 1.2E-12 4E-17 117.5 4.7 170 7-178 314-522 (592)
22 3t6q_A CD180 antigen; protein- 99.3 1.7E-12 5.7E-17 117.0 5.6 186 7-195 274-510 (606)
23 2z66_A Variable lymphocyte rec 99.3 1.1E-12 3.7E-17 108.5 3.9 86 2-90 21-111 (306)
24 1ozn_A Reticulon 4 receptor; N 99.3 2.3E-12 7.8E-17 105.7 5.6 188 3-196 26-236 (285)
25 3vq2_A TLR4, TOLL-like recepto 99.3 8.7E-12 3E-16 112.2 9.4 199 7-211 281-528 (606)
26 1o6v_A Internalin A; bacterial 99.3 8.2E-12 2.8E-16 109.4 8.9 181 7-195 173-385 (466)
27 3v47_A TOLL-like receptor 5B a 99.3 3E-11 1E-15 105.0 11.8 38 120-158 296-333 (455)
28 2p1m_B Transport inhibitor res 99.3 1.4E-12 4.7E-17 117.0 3.4 172 5-178 283-515 (594)
29 2id5_A Lingo-1, leucine rich r 99.3 2.9E-12 1E-16 112.3 5.4 78 11-90 32-114 (477)
30 3bz5_A Internalin-J, INLJ; leu 99.3 7.2E-12 2.5E-16 109.8 7.7 164 4-178 35-200 (457)
31 3zyi_A Leucine-rich repeat-con 99.3 1E-11 3.5E-16 108.3 8.4 166 9-178 121-299 (452)
32 3oja_B Anopheles plasmodium-re 99.3 1.8E-11 6E-16 110.6 10.0 62 6-68 94-157 (597)
33 3rfs_A Internalin B, repeat mo 99.2 4.7E-12 1.6E-16 103.3 5.3 178 9-193 39-230 (272)
34 3t6q_A CD180 antigen; protein- 99.2 1.7E-11 6E-16 110.3 9.1 78 12-91 255-336 (606)
35 2z80_A TOLL-like receptor 2, v 99.2 2.2E-11 7.6E-16 102.8 9.0 150 6-158 71-232 (353)
36 1h6t_A Internalin B; cell adhe 99.2 2.1E-11 7.3E-16 100.6 8.1 161 9-178 44-209 (291)
37 3zyj_A Leucine-rich repeat-con 99.2 1.8E-11 6.2E-16 106.4 8.0 166 9-178 110-288 (440)
38 3vq2_A TLR4, TOLL-like recepto 99.2 6.8E-12 2.3E-16 113.0 5.2 81 9-90 326-409 (606)
39 2id5_A Lingo-1, leucine rich r 99.2 2.7E-11 9.2E-16 106.1 8.7 65 3-68 95-162 (477)
40 2xwt_C Thyrotropin receptor; s 99.2 1.4E-11 4.9E-16 98.4 6.1 164 11-178 31-214 (239)
41 3o6n_A APL1; leucine-rich repe 99.2 1.5E-10 5.2E-15 98.8 12.7 65 3-68 60-127 (390)
42 3rfs_A Internalin B, repeat mo 99.2 1E-11 3.4E-16 101.4 4.9 164 6-177 58-230 (272)
43 2z63_A TOLL-like receptor 4, v 99.2 4.1E-11 1.4E-15 106.9 9.1 103 55-159 344-456 (570)
44 2z63_A TOLL-like receptor 4, v 99.2 8E-12 2.7E-16 111.5 4.2 183 11-196 325-529 (570)
45 2z66_A Variable lymphocyte rec 99.2 8.4E-12 2.9E-16 103.2 3.7 189 2-196 42-259 (306)
46 1xku_A Decorin; proteoglycan, 99.2 3.8E-11 1.3E-15 100.4 7.7 170 6-178 71-272 (330)
47 2o6q_A Variable lymphocyte rec 99.2 1.8E-11 6.3E-16 99.6 5.6 163 11-178 37-214 (270)
48 4ezg_A Putative uncharacterize 99.2 2.4E-11 8.1E-16 94.4 5.8 125 9-158 42-169 (197)
49 2z62_A TOLL-like receptor 4, v 99.2 1.7E-11 5.8E-16 99.9 5.0 189 2-195 21-234 (276)
50 1ozn_A Reticulon 4 receptor; N 99.2 1.9E-11 6.4E-16 100.2 5.3 170 5-178 50-234 (285)
51 1ogq_A PGIP-2, polygalacturona 99.2 8E-12 2.7E-16 104.1 2.8 190 2-195 67-278 (313)
52 3o53_A Protein LRIM1, AGAP0063 99.2 2.1E-11 7.2E-16 101.6 5.2 181 5-196 52-248 (317)
53 1m9s_A Internalin B; cell inva 99.2 4.7E-11 1.6E-15 108.1 7.5 142 9-158 41-185 (605)
54 1ogq_A PGIP-2, polygalacturona 99.2 7.5E-11 2.6E-15 98.2 8.2 173 2-178 92-277 (313)
55 1wwl_A Monocyte differentiatio 99.2 4E-12 1.4E-16 105.8 0.4 82 9-91 93-184 (312)
56 2z81_A CD282 antigen, TOLL-lik 99.1 1.9E-10 6.6E-15 102.2 11.2 168 3-178 325-506 (549)
57 1p9a_G Platelet glycoprotein I 99.1 6.1E-11 2.1E-15 97.8 7.3 184 7-195 6-205 (290)
58 2z80_A TOLL-like receptor 2, v 99.1 1.6E-11 5.6E-16 103.6 3.7 173 4-178 93-310 (353)
59 3j0a_A TOLL-like receptor 5; m 99.1 2.2E-10 7.6E-15 107.4 11.5 39 119-158 286-324 (844)
60 3oja_B Anopheles plasmodium-re 99.1 4.1E-10 1.4E-14 101.6 12.6 65 3-68 66-133 (597)
61 3oja_A Leucine-rich immune mol 99.1 6.2E-11 2.1E-15 104.6 7.0 182 4-196 51-248 (487)
62 3g06_A SSPH2 (leucine-rich rep 99.1 3.3E-10 1.1E-14 102.8 11.6 58 2-68 54-111 (622)
63 4eco_A Uncharacterized protein 99.1 8E-11 2.7E-15 107.2 6.1 66 3-68 239-315 (636)
64 4eco_A Uncharacterized protein 99.1 9E-11 3.1E-15 106.8 6.3 205 2-211 264-520 (636)
65 4ezg_A Putative uncharacterize 99.1 5.9E-11 2E-15 92.2 4.3 131 3-158 59-191 (197)
66 2ca6_A RAN GTPase-activating p 99.1 1.4E-10 4.8E-15 99.0 7.0 116 80-196 159-314 (386)
67 1h6t_A Internalin B; cell adhe 99.1 1.8E-10 6.1E-15 95.0 7.4 144 7-158 64-210 (291)
68 2ft3_A Biglycan; proteoglycan, 99.1 4.7E-11 1.6E-15 99.9 3.9 186 4-196 71-305 (332)
69 2z62_A TOLL-like receptor 4, v 99.1 2.6E-11 8.9E-16 98.8 2.0 180 6-190 47-246 (276)
70 1xeu_A Internalin C; cellular 99.1 8.8E-11 3E-15 95.5 5.0 142 7-158 37-182 (263)
71 2o6q_A Variable lymphocyte rec 99.1 1E-10 3.5E-15 95.1 5.3 150 6-159 56-216 (270)
72 1m9s_A Internalin B; cell inva 99.1 1.3E-10 4.4E-15 105.3 6.2 146 6-159 60-208 (605)
73 3m19_A Variable lymphocyte rec 99.1 9E-11 3.1E-15 94.5 4.5 78 11-90 35-117 (251)
74 1wwl_A Monocyte differentiatio 99.1 4.4E-11 1.5E-15 99.5 2.4 204 3-211 57-303 (312)
75 3g06_A SSPH2 (leucine-rich rep 99.0 8.6E-10 2.9E-14 100.2 10.7 53 9-68 79-131 (622)
76 2z7x_B TOLL-like receptor 1, v 99.0 6.1E-10 2.1E-14 98.4 9.4 163 11-178 302-477 (520)
77 1p9a_G Platelet glycoprotein I 99.0 1.3E-10 4.3E-15 95.9 3.9 168 2-178 24-204 (290)
78 2z81_A CD282 antigen, TOLL-lik 99.0 2.2E-09 7.7E-14 95.3 12.0 152 5-158 44-206 (549)
79 2xwt_C Thyrotropin receptor; s 99.0 4.1E-10 1.4E-14 89.8 6.5 171 3-178 46-235 (239)
80 4ecn_A Leucine-rich repeat pro 99.0 3.9E-10 1.3E-14 105.9 7.4 152 3-158 481-654 (876)
81 3j0a_A TOLL-like receptor 5; m 99.0 1.2E-09 4.1E-14 102.4 10.7 79 11-90 24-107 (844)
82 4ecn_A Leucine-rich repeat pro 99.0 1.7E-10 5.9E-15 108.3 5.0 204 2-211 506-783 (876)
83 1jl5_A Outer protein YOPM; leu 99.0 1.5E-09 5.2E-14 94.9 10.7 136 11-158 111-267 (454)
84 4glp_A Monocyte differentiatio 99.0 8.2E-11 2.8E-15 97.7 2.1 148 10-158 90-261 (310)
85 1ziw_A TOLL-like receptor 3; i 99.0 5.6E-10 1.9E-14 101.8 7.7 55 12-67 249-305 (680)
86 3a79_B TLR6, VLRB.59, TOLL-lik 99.0 2.9E-10 1E-14 101.7 5.6 42 118-159 372-414 (562)
87 1z7x_W Ribonuclease inhibitor; 99.0 1.3E-10 4.5E-15 101.0 2.9 62 7-68 52-123 (461)
88 3e4g_A ATP synthase subunit S, 99.0 3.6E-10 1.2E-14 86.4 4.7 94 2-95 52-154 (176)
89 2ca6_A RAN GTPase-activating p 99.0 6.7E-11 2.3E-15 101.0 0.6 150 8-158 91-284 (386)
90 1ziw_A TOLL-like receptor 3; i 99.0 2.8E-10 9.5E-15 103.8 4.4 171 4-178 398-593 (680)
91 2z7x_B TOLL-like receptor 1, v 99.0 6.9E-10 2.4E-14 98.1 6.7 186 2-196 262-479 (520)
92 1xku_A Decorin; proteoglycan, 98.9 8.6E-10 2.9E-14 92.0 5.5 151 4-158 93-273 (330)
93 2ell_A Acidic leucine-rich nuc 98.9 2.7E-10 9.1E-15 86.0 2.2 129 11-160 24-159 (168)
94 4g8a_A TOLL-like receptor 4; l 98.9 3.6E-09 1.2E-13 94.9 9.8 132 3-138 46-188 (635)
95 3goz_A Leucine-rich repeat-con 98.9 6.7E-10 2.3E-14 94.1 4.4 66 4-69 15-91 (362)
96 1xeu_A Internalin C; cellular 98.9 5.6E-10 1.9E-14 90.7 3.7 159 10-178 18-181 (263)
97 1z7x_W Ribonuclease inhibitor; 98.9 1E-09 3.5E-14 95.4 4.5 153 6-159 222-409 (461)
98 3m19_A Variable lymphocyte rec 98.9 1.5E-09 5.2E-14 87.2 5.0 162 11-178 14-188 (251)
99 1a9n_A U2A', U2A'; complex (nu 98.9 2.3E-09 8E-14 81.5 5.4 131 7-159 15-151 (176)
100 2je0_A Acidic leucine-rich nuc 98.9 3.8E-10 1.3E-14 83.5 0.9 126 10-156 16-148 (149)
101 3a79_B TLR6, VLRB.59, TOLL-lik 98.9 4.2E-09 1.4E-13 94.2 7.8 162 11-178 331-506 (562)
102 1jl5_A Outer protein YOPM; leu 98.8 1.3E-08 4.6E-13 88.9 10.6 60 3-68 146-205 (454)
103 3e6j_A Variable lymphocyte rec 98.8 4.8E-09 1.6E-13 83.3 7.0 39 119-158 131-169 (229)
104 2o6s_A Variable lymphocyte rec 98.8 4.6E-09 1.6E-13 81.9 6.5 126 11-158 28-158 (208)
105 2ft3_A Biglycan; proteoglycan, 98.8 1.5E-09 5E-14 90.8 3.8 169 4-178 95-303 (332)
106 2v9t_B SLIT homolog 2 protein 98.8 8.9E-09 3.1E-13 81.3 7.8 39 119-158 124-162 (220)
107 2ell_A Acidic leucine-rich nuc 98.8 5E-09 1.7E-13 78.9 5.2 118 2-137 40-161 (168)
108 4glp_A Monocyte differentiatio 98.8 1E-08 3.6E-13 84.8 7.0 146 7-158 141-304 (310)
109 4ay9_X Follicle-stimulating ho 98.8 4E-09 1.4E-13 89.0 4.4 88 2-91 23-115 (350)
110 3goz_A Leucine-rich repeat-con 98.8 5.3E-09 1.8E-13 88.5 5.1 169 7-178 46-262 (362)
111 2v70_A SLIT-2, SLIT homolog 2 98.8 5.4E-09 1.9E-13 82.6 4.6 141 14-158 14-163 (220)
112 2xot_A Amphoterin-induced prot 98.7 5.8E-08 2E-12 82.2 8.6 149 3-157 33-198 (361)
113 2ra8_A Uncharacterized protein 98.7 5.1E-08 1.7E-12 82.9 8.1 134 7-158 168-317 (362)
114 1ds9_A Outer arm dynein; leuci 98.7 4.4E-10 1.5E-14 87.3 -4.4 36 119-154 136-180 (198)
115 3cvr_A Invasion plasmid antige 98.7 2E-08 6.9E-13 90.3 5.7 168 11-196 59-241 (571)
116 3cvr_A Invasion plasmid antige 98.7 3.1E-08 1.1E-12 89.0 6.7 155 3-178 74-239 (571)
117 3un9_A NLR family member X1; l 98.6 3.2E-09 1.1E-13 90.6 -0.2 148 10-158 71-249 (372)
118 3e4g_A ATP synthase subunit S, 98.6 5.5E-09 1.9E-13 79.8 0.9 90 33-163 61-154 (176)
119 2je0_A Acidic leucine-rich nuc 98.6 7.3E-09 2.5E-13 76.4 1.3 88 2-91 33-124 (149)
120 2o6s_A Variable lymphocyte rec 98.6 5.4E-08 1.9E-12 75.7 5.6 158 14-195 10-175 (208)
121 4g8a_A TOLL-like receptor 4; l 98.6 3.6E-08 1.2E-12 88.5 4.8 99 78-178 467-576 (635)
122 1dce_A Protein (RAB geranylger 98.5 9.4E-08 3.2E-12 85.9 6.9 36 119-154 529-566 (567)
123 3sb4_A Hypothetical leucine ri 98.5 3E-07 1E-11 76.7 9.1 86 122-210 225-327 (329)
124 2v70_A SLIT-2, SLIT homolog 2 98.5 9E-08 3.1E-12 75.5 5.6 130 3-137 26-167 (220)
125 2xot_A Amphoterin-induced prot 98.5 1.4E-07 4.7E-12 79.8 6.6 145 14-164 21-178 (361)
126 3e6j_A Variable lymphocyte rec 98.5 2.1E-07 7.3E-12 73.7 6.4 141 13-178 21-168 (229)
127 3sb4_A Hypothetical leucine ri 98.5 5.3E-07 1.8E-11 75.2 8.8 157 10-175 100-327 (329)
128 1w8a_A SLIT protein; signaling 98.4 1.7E-07 5.9E-12 72.2 4.8 75 14-90 11-88 (192)
129 1w8a_A SLIT protein; signaling 98.4 5.2E-07 1.8E-11 69.5 7.0 114 2-138 22-141 (192)
130 2wfh_A SLIT homolog 2 protein 98.4 3.8E-07 1.3E-11 70.4 6.1 120 14-157 13-135 (193)
131 2v9t_B SLIT homolog 2 protein 98.4 4E-07 1.4E-11 71.7 5.2 131 2-137 25-166 (220)
132 1a9n_A U2A', U2A'; complex (nu 98.3 4.2E-07 1.4E-11 68.9 4.9 109 29-159 15-124 (176)
133 2o6r_A Variable lymphocyte rec 98.3 6.2E-07 2.1E-11 67.9 5.6 75 13-90 9-86 (177)
134 2ra8_A Uncharacterized protein 98.3 1.6E-07 5.4E-12 79.8 2.5 165 12-178 108-316 (362)
135 4b8c_D Glucose-repressible alc 98.3 2.9E-07 9.8E-12 85.1 3.8 104 31-138 222-331 (727)
136 2o6r_A Variable lymphocyte rec 98.3 1.2E-06 4.1E-11 66.3 6.2 113 3-138 22-139 (177)
137 4ay9_X Follicle-stimulating ho 98.3 7.9E-07 2.7E-11 74.8 5.4 170 3-178 45-255 (350)
138 2wfh_A SLIT homolog 2 protein 98.2 1.1E-06 3.6E-11 67.9 4.8 112 2-136 24-139 (193)
139 3un9_A NLR family member X1; l 98.2 1.2E-07 4E-12 80.9 -1.7 134 10-144 100-260 (372)
140 1ds9_A Outer arm dynein; leuci 98.1 5.5E-08 1.9E-12 75.3 -4.7 104 31-159 46-151 (198)
141 4fdw_A Leucine rich hypothetic 98.0 1.1E-05 3.9E-10 69.2 6.8 136 57-199 202-359 (401)
142 3g39_A Variable lymphocyte rec 97.9 6.2E-06 2.1E-10 62.2 3.5 75 13-90 11-88 (170)
143 2r9u_A Variable lymphocyte rec 97.9 8E-06 2.7E-10 61.9 3.5 74 14-90 15-91 (174)
144 1dce_A Protein (RAB geranylger 97.9 3E-06 1E-10 76.1 1.0 115 12-130 442-567 (567)
145 4b8c_D Glucose-repressible alc 97.8 4.2E-06 1.4E-10 77.3 1.6 103 4-110 217-325 (727)
146 1io0_A Tropomodulin; LRR prote 97.8 1.2E-05 4E-10 61.6 3.6 40 119-158 117-161 (185)
147 3g39_A Variable lymphocyte rec 97.7 5.6E-05 1.9E-09 56.8 6.3 32 58-90 30-64 (170)
148 2r9u_A Variable lymphocyte rec 97.7 9.7E-05 3.3E-09 55.8 7.4 79 58-157 33-114 (174)
149 4fdw_A Leucine rich hypothetic 97.7 0.00016 5.5E-09 62.0 9.5 157 9-178 178-354 (401)
150 1io0_A Tropomodulin; LRR prote 97.5 0.00018 6.2E-09 54.8 5.9 104 7-110 32-160 (185)
151 2ifg_A High affinity nerve gro 97.4 9.5E-05 3.3E-09 61.6 3.3 86 2-91 23-114 (347)
152 2ifg_A High affinity nerve gro 97.1 0.00051 1.7E-08 57.2 5.2 101 15-137 12-117 (347)
153 3rw6_A Nuclear RNA export fact 96.8 0.00086 3E-08 54.3 3.9 104 33-156 141-259 (267)
154 4fs7_A Uncharacterized protein 96.5 0.0049 1.7E-07 52.2 7.0 36 119-156 293-328 (394)
155 3rw6_A Nuclear RNA export fact 96.2 0.0036 1.2E-07 50.7 3.8 77 9-87 168-258 (267)
156 4fs7_A Uncharacterized protein 96.1 0.02 6.8E-07 48.4 8.4 37 118-156 338-374 (394)
157 4gt6_A Cell surface protein; l 95.0 0.073 2.5E-06 44.9 7.9 54 30-89 262-320 (394)
158 4h09_A Hypothetical leucine ri 94.5 0.47 1.6E-05 39.5 11.6 12 55-66 155-166 (379)
159 4gt6_A Cell surface protein; l 93.6 0.12 4.2E-06 43.5 6.2 75 78-156 263-342 (394)
160 4h09_A Hypothetical leucine ri 90.6 1.2 4E-05 37.0 8.6 38 118-156 281-318 (379)
161 1pgv_A TMD-1, tropomodulin TMD 88.3 0.52 1.8E-05 36.1 4.3 80 9-90 39-136 (197)
162 1pgv_A TMD-1, tropomodulin TMD 82.8 1.1 3.9E-05 34.1 3.8 110 31-157 39-166 (197)
163 3rfe_A Platelet glycoprotein I 82.4 0.93 3.2E-05 31.9 3.0 34 12-45 32-67 (130)
164 3rfe_A Platelet glycoprotein I 69.8 2.4 8.1E-05 29.8 2.2 34 123-157 31-64 (130)
165 2lz0_A Uncharacterized protein 29.7 26 0.0009 23.1 1.9 12 77-88 40-51 (100)
No 1
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.50 E-value=6e-15 Score=123.52 Aligned_cols=185 Identities=13% Similarity=0.121 Sum_probs=129.1
Q ss_pred CCccEEEeccccccc-ccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceE--EecCCCCCcceEEe
Q 040388 11 ESIVVLELQFCKLES-LRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKC--LELPDLNNLKEFKA 87 (226)
Q Consensus 11 ~sL~~L~L~~c~~~~-~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~--l~i~~~~~Lk~L~l 87 (226)
+.+++|+++++.+.. .+....+++|++|+++++.+++..+..++.+||+|++|++++|.--.. -.++.+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 788888888887653 234456899999999999888887888889999999999998842111 13456889999999
Q ss_pred ccCCCce-----EEEEecceeeEEEeCCC-Ccc---ccccccCcc-cCcEEEeecc--ccCchhHHHHHhcCCCCcEEec
Q 040388 88 YDNFRLQ-----RLHINGVNVCSIDLASR-RTL---SDINVAPCK-HLEKLKLSGL--YIIDECPSNQVSKLQFLEYLHI 155 (226)
Q Consensus 88 ~~c~~l~-----~~~~~~~~L~~L~~~~~-~~~---~~~~~~~~~-~L~~L~L~~~--~it~~~~~~l~~~~~~Le~L~l 155 (226)
++|..+. .+...+++|++|++.+. ... ....+..++ +|++|++++| .+++..+...+..+++|+.|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 9885333 22235688888885543 111 122356777 8999999988 5776666667778899999999
Q ss_pred cccccceeec---c-CccccceeEEcce---------EEEeCCCcceEEEeec
Q 040388 156 DCCMKLRSAK---I-SSRCLKKLFFKGE---------FMLDTSNLSTFEYQGN 195 (226)
Q Consensus 156 ~~C~~L~~l~---i-~~~~L~~L~l~~~---------~~i~~p~L~sl~~~g~ 195 (226)
++|..++... + ..++|+.|++.+- ..-..|+|+.+...|.
T Consensus 230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 8886543221 1 2367888888751 1234788888888776
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.48 E-value=3.8e-14 Score=119.07 Aligned_cols=58 Identities=26% Similarity=0.326 Sum_probs=25.8
Q ss_pred ccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccceeecc---CccccceeEEcc
Q 040388 119 VAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAKI---SSRCLKKLFFKG 178 (226)
Q Consensus 119 ~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~i---~~~~L~~L~l~~ 178 (226)
+..+++|++|++++|.++.. + ..+..+++|+.|++++|.....+.. ..++|+.|++.+
T Consensus 202 l~~l~~L~~L~L~~N~l~~l-~-~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~ 262 (328)
T 4fcg_A 202 IANLQNLKSLKIRNSPLSAL-G-PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262 (328)
T ss_dssp GGGCTTCCEEEEESSCCCCC-C-GGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTT
T ss_pred hcCCCCCCEEEccCCCCCcC-c-hhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCC
Confidence 34445555555555554431 1 1234455555555555544333321 113455555543
No 3
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.44 E-value=3.5e-13 Score=113.31 Aligned_cols=198 Identities=16% Similarity=0.157 Sum_probs=94.6
Q ss_pred ccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCC-----------ceEEe
Q 040388 7 AFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGG-----------LKCLE 75 (226)
Q Consensus 7 ~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~-----------l~~l~ 75 (226)
+..+++|++|++++|.+...+....+++|++|+++++.+++- . -+.++++|++|++++|.- ++.++
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~--~-~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~ 138 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI--S-ALQNLTNLRELYLNEDNISDISPLANLTKMYSLN 138 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--G-GGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEE
T ss_pred hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCc--h-HHcCCCcCCEEECcCCcccCchhhccCCceeEEE
Confidence 445666777777776654322244566666666666655221 1 145566666666665521 22222
Q ss_pred c------------CCCCCcceEEeccCC--CceEEEEecceeeEEEeCCCC--c--------------------cccccc
Q 040388 76 L------------PDLNNLKEFKAYDNF--RLQRLHINGVNVCSIDLASRR--T--------------------LSDINV 119 (226)
Q Consensus 76 i------------~~~~~Lk~L~l~~c~--~l~~~~~~~~~L~~L~~~~~~--~--------------------~~~~~~ 119 (226)
+ ..+++|+++++++|. .+.. ....++|+++++.+.. . .....+
T Consensus 139 l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 217 (347)
T 4fmz_A 139 LGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPV 217 (347)
T ss_dssp CTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGG
T ss_pred CCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchh
Confidence 2 123444444444442 0000 0123444444432210 0 000013
Q ss_pred cCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccceeec-cC-ccccceeEEcc-eE-----EEeCCCcceEE
Q 040388 120 APCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAK-IS-SRCLKKLFFKG-EF-----MLDTSNLSTFE 191 (226)
Q Consensus 120 ~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~-i~-~~~L~~L~l~~-~~-----~i~~p~L~sl~ 191 (226)
..+++|++|++++|.+++... +..+++|+.|++++| .++.+. +. .++|+.|++.+ .+ .-..|+|+.+.
T Consensus 218 ~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 293 (347)
T 4fmz_A 218 ANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLF 293 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEE
T ss_pred hcCCcCCEEEccCCccCCCcc---hhcCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEE
Confidence 445566666666666554322 455666666666664 222222 11 24677777665 11 13357777777
Q ss_pred Eeecceee----cc-ccccceeeeEe
Q 040388 192 YQGNLVSF----SS-NALALSQIILF 212 (226)
Q Consensus 192 ~~g~~~~~----~~-~~~~l~~~~~~ 212 (226)
..++.+.- .. +.+.|+.+.+.
T Consensus 294 L~~n~l~~~~~~~l~~l~~L~~L~L~ 319 (347)
T 4fmz_A 294 LNNNQLGNEDMEVIGGLTNLTTLFLS 319 (347)
T ss_dssp CCSSCCCGGGHHHHHTCTTCSEEECC
T ss_pred CcCCcCCCcChhHhhccccCCEEEcc
Confidence 77664211 11 45666666653
No 4
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.43 E-value=1.8e-14 Score=120.54 Aligned_cols=173 Identities=19% Similarity=0.266 Sum_probs=119.3
Q ss_pred CccccccCCccEEEeccccccc--c-cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceE--E--ec
Q 040388 4 PQVAFNAESIVVLELQFCKLES--L-RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKC--L--EL 76 (226)
Q Consensus 4 P~~~~~~~sL~~L~L~~c~~~~--~-~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~--l--~i 76 (226)
+..++.+++|++|++++|.+.. . .....+++|++|+|++|.+++..... ++.||+|++|++++|..+.. + .+
T Consensus 86 ~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~ 164 (336)
T 2ast_B 86 LAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLL 164 (336)
T ss_dssp CCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHH
T ss_pred chhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHH
Confidence 3446778899999999988642 1 23346899999999999887766555 45689999999999865542 1 13
Q ss_pred CCCCCcceEEeccCCCce-----EEEEecc-eeeEEEeCCCC-----ccccccccCcccCcEEEeeccc-cCchhHHHHH
Q 040388 77 PDLNNLKEFKAYDNFRLQ-----RLHINGV-NVCSIDLASRR-----TLSDINVAPCKHLEKLKLSGLY-IIDECPSNQV 144 (226)
Q Consensus 77 ~~~~~Lk~L~l~~c~~l~-----~~~~~~~-~L~~L~~~~~~-----~~~~~~~~~~~~L~~L~L~~~~-it~~~~~~l~ 144 (226)
.++++|++|++++|..+. .....+| +|++|++.+.. ......+..+++|++|++++|. +++..+.. +
T Consensus 165 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-l 243 (336)
T 2ast_B 165 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-F 243 (336)
T ss_dssp HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG-G
T ss_pred hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH-H
Confidence 457889999998884333 2223467 89998865531 1112234578899999999888 77665554 3
Q ss_pred hcCCCCcEEeccccccceee---cc-CccccceeEEcc
Q 040388 145 SKLQFLEYLHIDCCMKLRSA---KI-SSRCLKKLFFKG 178 (226)
Q Consensus 145 ~~~~~Le~L~l~~C~~L~~l---~i-~~~~L~~L~l~~ 178 (226)
..+++|+.|++++|..+..- .+ ..++|+.|++.+
T Consensus 244 ~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 244 FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281 (336)
T ss_dssp GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence 67799999999888644332 12 246788888876
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.39 E-value=1.2e-13 Score=116.09 Aligned_cols=173 Identities=18% Similarity=0.208 Sum_probs=126.8
Q ss_pred CCCccccccCCccEEEeccccccccc-CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe-----
Q 040388 2 NLPQVAFNAESIVVLELQFCKLESLR-NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE----- 75 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~c~~~~~~-~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~----- 75 (226)
.+|..++.+++|++|+|++|.+...+ ....+++|++|+|+++.++ .+..-+.++++|++|++++|..+..+.
T Consensus 95 ~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 172 (328)
T 4fcg_A 95 QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTELPEPLAS 172 (328)
T ss_dssp SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEE
T ss_pred hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCCEEECCCCCCccccChhHhh
Confidence 47899999999999999999986433 3457999999999999885 334447889999999999986554331
Q ss_pred ------cCCCCCcceEEeccCCCceEEE---EecceeeEEEeCCC-CccccccccCcccCcEEEeeccccCchhHHHHHh
Q 040388 76 ------LPDLNNLKEFKAYDNFRLQRLH---INGVNVCSIDLASR-RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVS 145 (226)
Q Consensus 76 ------i~~~~~Lk~L~l~~c~~l~~~~---~~~~~L~~L~~~~~-~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~ 145 (226)
+.++++|+.|++++|. +..+. ...++|++|++.+. .......+..+++|++|++++|.+....+ ..+.
T Consensus 173 ~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p-~~~~ 250 (328)
T 4fcg_A 173 TDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYP-PIFG 250 (328)
T ss_dssp EC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCC-CCTT
T ss_pred ccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhH-HHhc
Confidence 2237899999999884 33221 24678999985442 11122246788899999999988766543 3357
Q ss_pred cCCCCcEEeccccccceeeccC---ccccceeEEcc
Q 040388 146 KLQFLEYLHIDCCMKLRSAKIS---SRCLKKLFFKG 178 (226)
Q Consensus 146 ~~~~Le~L~l~~C~~L~~l~i~---~~~L~~L~l~~ 178 (226)
.+++|+.|++++|..++.+... .++|+.|++.+
T Consensus 251 ~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~ 286 (328)
T 4fcg_A 251 GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286 (328)
T ss_dssp CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTT
T ss_pred CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCC
Confidence 7899999999998877766532 25678888776
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.39 E-value=1.2e-12 Score=110.08 Aligned_cols=79 Identities=19% Similarity=0.139 Sum_probs=59.4
Q ss_pred ccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE-ecCCCCCcceEEe
Q 040388 9 NAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL-ELPDLNNLKEFKA 87 (226)
Q Consensus 9 ~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l-~i~~~~~Lk~L~l 87 (226)
.+++|++|++++|.+...+....+++|++|+++++.+++-. . +.++++|++|++++|. +..+ .+.++++|++|++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~--~-~~~l~~L~~L~L~~n~-i~~~~~~~~l~~L~~L~l 117 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDIS--P-LSNLVKLTNLYIGTNK-ITDISALQNLTNLRELYL 117 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEEEC
T ss_pred hcccccEEEEeCCccccchhhhhcCCccEEEccCCccccch--h-hhcCCcCCEEEccCCc-ccCchHHcCCCcCCEEEC
Confidence 57899999999999875455567999999999999884322 1 7899999999999883 2222 2455677777777
Q ss_pred ccCC
Q 040388 88 YDNF 91 (226)
Q Consensus 88 ~~c~ 91 (226)
++|.
T Consensus 118 ~~n~ 121 (347)
T 4fmz_A 118 NEDN 121 (347)
T ss_dssp TTSC
T ss_pred cCCc
Confidence 6664
No 7
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.39 E-value=2.8e-13 Score=121.52 Aligned_cols=168 Identities=14% Similarity=0.109 Sum_probs=97.2
Q ss_pred ccCCccEEEecccccccc--cCc-cCCCcccEEEecce-ecCHHHHHHHHhcCCccceeeeeccC---------------
Q 040388 9 NAESIVVLELQFCKLESL--RNN-VTLSSLRKLCSSHV-YEDDQVIEDFVAGCPLIEYMHVFDCG--------------- 69 (226)
Q Consensus 9 ~~~sL~~L~L~~c~~~~~--~~~-~~l~sLk~L~L~~~-~~~~~~l~~l~~~cp~Le~L~l~~c~--------------- 69 (226)
.+++|++|++++|.+... ... ..+++|++|+|++| .+++..+..+..+||+|++|++++|.
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 567888888888876421 111 15788888888888 44777788888888888888888774
Q ss_pred --CceEEecCC----------------CCCcceEEeccCCCceE---EEEecceeeEEEeC-------------------
Q 040388 70 --GLKCLELPD----------------LNNLKEFKAYDNFRLQR---LHINGVNVCSIDLA------------------- 109 (226)
Q Consensus 70 --~l~~l~i~~----------------~~~Lk~L~l~~c~~l~~---~~~~~~~L~~L~~~------------------- 109 (226)
+|+.+++++ |++|++|++++|..+.. +...+++|++|+..
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~ 262 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS 262 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHh
Confidence 233333322 24444444444421110 00012333333210
Q ss_pred ------------CC-CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEecccccc---ceeeccCccccce
Q 040388 110 ------------SR-RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMK---LRSAKISSRCLKK 173 (226)
Q Consensus 110 ------------~~-~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~---L~~l~i~~~~L~~ 173 (226)
+. ..........+++|++|++++|.+++..+..+...+++|+.|++.+|.. +..+.-..++|+.
T Consensus 263 ~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~ 342 (594)
T 2p1m_B 263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRE 342 (594)
T ss_dssp TCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCE
T ss_pred cCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCE
Confidence 00 0000111225788999999988888777777778889999999887721 1111112355666
Q ss_pred eEE
Q 040388 174 LFF 176 (226)
Q Consensus 174 L~l 176 (226)
|++
T Consensus 343 L~L 345 (594)
T 2p1m_B 343 LRV 345 (594)
T ss_dssp EEE
T ss_pred EEE
Confidence 666
No 8
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.36 E-value=8.8e-13 Score=115.12 Aligned_cols=116 Identities=16% Similarity=0.136 Sum_probs=61.2
Q ss_pred CCCCcceEEeccCCCceEEEE----ecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEE
Q 040388 78 DLNNLKEFKAYDNFRLQRLHI----NGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYL 153 (226)
Q Consensus 78 ~~~~Lk~L~l~~c~~l~~~~~----~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L 153 (226)
++++|++|++++|..++.+.. ..++|++|++.+........+..+++|++|++++|.+++... ..+..+++|+.|
T Consensus 169 ~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L 247 (452)
T 3zyi_A 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRP-GSFHGLSSLKKL 247 (452)
T ss_dssp TCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECG-GGGTTCTTCCEE
T ss_pred cCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCc-ccccCccCCCEE
Confidence 456666666666554444332 245666666443211111134566677777777777665432 334566777777
Q ss_pred eccccccceeecc---C-ccccceeEEcc-e-------EEEeCCCcceEEEeec
Q 040388 154 HIDCCMKLRSAKI---S-SRCLKKLFFKG-E-------FMLDTSNLSTFEYQGN 195 (226)
Q Consensus 154 ~l~~C~~L~~l~i---~-~~~L~~L~l~~-~-------~~i~~p~L~sl~~~g~ 195 (226)
++.++. ++.+.. . .++|+.|++.+ . ..-..++|+.+...++
T Consensus 248 ~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 248 WVMNSQ-VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp ECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred EeCCCc-CceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCC
Confidence 777642 233321 1 24566666665 1 1123466666666665
No 9
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.36 E-value=2.4e-12 Score=112.91 Aligned_cols=140 Identities=16% Similarity=0.159 Sum_probs=58.3
Q ss_pred ccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEecCCCCCcceEE
Q 040388 7 AFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLELPDLNNLKEFK 86 (226)
Q Consensus 7 ~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~i~~~~~Lk~L~ 86 (226)
+..+++|++|++++|.+...+ ...+++|++|+++++.+++-. +.++++|++|++++| .+..+.++.+++|++|+
T Consensus 60 l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~----~~~l~~L~~L~L~~N-~l~~l~~~~l~~L~~L~ 133 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD----VTPLTKLTYLNCDTN-KLTKLDVSQNPLLTYLN 133 (457)
T ss_dssp GGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEECCSS-CCSCCCCTTCTTCCEEE
T ss_pred hcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee----cCCCCcCCEEECCCC-cCCeecCCCCCcCCEEE
Confidence 334444555555554443211 223445555555554442211 344455555555544 12222334445555555
Q ss_pred eccCCCceEEEE-ecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccc
Q 040388 87 AYDNFRLQRLHI-NGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDC 157 (226)
Q Consensus 87 l~~c~~l~~~~~-~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~ 157 (226)
+++|. +..+.+ ..++|++|+..+......+.+..+++|++|++++|.+++.. +..+++|+.|++++
T Consensus 134 l~~N~-l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~----l~~l~~L~~L~l~~ 200 (457)
T 3bz5_A 134 CARNT-LTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD----VSQNKLLNRLNCDT 200 (457)
T ss_dssp CTTSC-CSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC----CTTCTTCCEEECCS
T ss_pred CCCCc-cceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec----cccCCCCCEEECcC
Confidence 55442 211111 23444554432211111123344555555555555554421 23445555555444
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.36 E-value=1e-12 Score=122.05 Aligned_cols=154 Identities=18% Similarity=0.047 Sum_probs=78.7
Q ss_pred CccccccCCccEEEecccccc--ccc--CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE--e--
Q 040388 4 PQVAFNAESIVVLELQFCKLE--SLR--NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL--E-- 75 (226)
Q Consensus 4 P~~~~~~~sL~~L~L~~c~~~--~~~--~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l--~-- 75 (226)
|..+..+++|++|+|++|.+. .+. ....+++|++|+|+++.++......+...+++|++|++++|.--... .
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 172 (768)
T 3rgz_A 93 VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV 172 (768)
T ss_dssp CCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHH
T ss_pred chhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhh
Confidence 345555566666666666543 111 22345666666666655422111112244555666666555321110 1
Q ss_pred -cCCCCCcceEEeccCCCceEEE-EecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCc
Q 040388 76 -LPDLNNLKEFKAYDNFRLQRLH-INGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLE 151 (226)
Q Consensus 76 -i~~~~~Lk~L~l~~c~~l~~~~-~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le 151 (226)
+.++++|++|++++|..-.... ..+++|++|++.+. ....+ .+..+++|++|++++|.+++..+. .+..+++|+
T Consensus 173 ~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~ 250 (768)
T 3rgz_A 173 LSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSR-AISTCTELK 250 (768)
T ss_dssp HTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCC-BCTTCCSCCEEECCSSCCCSCHHH-HTTTCSSCC
T ss_pred hhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCc-ccccCCCCCEEECcCCcCCCcccH-HHhcCCCCC
Confidence 4456666666666663110001 23566777774432 11111 256677777777777777655433 346677777
Q ss_pred EEeccccc
Q 040388 152 YLHIDCCM 159 (226)
Q Consensus 152 ~L~l~~C~ 159 (226)
.|++++|.
T Consensus 251 ~L~Ls~n~ 258 (768)
T 3rgz_A 251 LLNISSNQ 258 (768)
T ss_dssp EEECCSSC
T ss_pred EEECCCCc
Confidence 77777663
No 11
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.35 E-value=1.7e-12 Score=108.03 Aligned_cols=56 Identities=13% Similarity=0.016 Sum_probs=27.3
Q ss_pred cCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeecc
Q 040388 10 AESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDC 68 (226)
Q Consensus 10 ~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 68 (226)
+++|++|++++|.+...+....+++|++|+|+++.+++-. . +.++++|++|++++|
T Consensus 40 l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~--~-~~~l~~L~~L~L~~n 95 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA--P-LKNLTKITELELSGN 95 (308)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCCSCCEEECCSC
T ss_pred cCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCCh--h-HccCCCCCEEEccCC
Confidence 3455555555555443233334555555555555542211 1 445555555555554
No 12
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.34 E-value=1.5e-12 Score=114.95 Aligned_cols=186 Identities=16% Similarity=0.125 Sum_probs=120.5
Q ss_pred CCcccccc----CCccEEEecccccccc--cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEec
Q 040388 3 LPQVAFNA----ESIVVLELQFCKLESL--RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLEL 76 (226)
Q Consensus 3 lP~~~~~~----~sL~~L~L~~c~~~~~--~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~i 76 (226)
+|..+... ++|++|+|++|.+... .....+++|++|+|++|.+++.. . +.++++|+.|++++| .+..+..
T Consensus 22 l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N-~l~~l~~ 97 (487)
T 3oja_A 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNN-YVQELLV 97 (487)
T ss_dssp HHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE--E-CTTCTTCCEEECCSS-EEEEEEE
T ss_pred hHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc--c-cccCCCCCEEEecCC-cCCCCCC
Confidence 45555544 3899999999987632 23457899999999999873211 1 778999999999987 4444432
Q ss_pred CCCCCcceEEeccCCCceEEE-EecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEE
Q 040388 77 PDLNNLKEFKAYDNFRLQRLH-INGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYL 153 (226)
Q Consensus 77 ~~~~~Lk~L~l~~c~~l~~~~-~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L 153 (226)
.++|+.|++++|. +..+. ...++|++|++.+. .......+..+++|++|++++|.+++..+..+...+++|+.|
T Consensus 98 --~~~L~~L~L~~N~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 98 --GPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174 (487)
T ss_dssp --CTTCCEEECCSSC-CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred --CCCcCEEECcCCc-CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEE
Confidence 3788888888884 33322 23578888885443 222233456778888888888888776555555577888888
Q ss_pred eccccccceeec-c-CccccceeEEcc-e---E---EEeCCCcceEEEeecc
Q 040388 154 HIDCCMKLRSAK-I-SSRCLKKLFFKG-E---F---MLDTSNLSTFEYQGNL 196 (226)
Q Consensus 154 ~l~~C~~L~~l~-i-~~~~L~~L~l~~-~---~---~i~~p~L~sl~~~g~~ 196 (226)
++++|. ++.+. . ..++|+.|++.+ . + ....|+|+.+...++.
T Consensus 175 ~Ls~N~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 175 NLQYNF-IYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK 225 (487)
T ss_dssp ECTTSC-CCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC
T ss_pred ecCCCc-cccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc
Confidence 888753 22222 1 134566666665 1 1 1234566666665553
No 13
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.34 E-value=1.4e-12 Score=116.98 Aligned_cols=190 Identities=17% Similarity=0.117 Sum_probs=94.2
Q ss_pred cccccCCccEEEecccccccc---cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeec----------cCCce
Q 040388 6 VAFNAESIVVLELQFCKLESL---RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFD----------CGGLK 72 (226)
Q Consensus 6 ~~~~~~sL~~L~L~~c~~~~~---~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~----------c~~l~ 72 (226)
.+..+++|++|++++|.+... .....+++|++|++. ..+++..+..+..+||+|++|++++ |..+.
T Consensus 288 ~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~ 366 (592)
T 3ogk_B 288 LFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS 366 (592)
T ss_dssp GGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCC
T ss_pred HHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccC
Confidence 333445555555555553210 011245555555555 2234444555555555555555553 33322
Q ss_pred EEe----cCCCCCcceEEeccCC----CceEEEEecceeeEEEeC-----CCCcc------ccccccCcccCcEEEeecc
Q 040388 73 CLE----LPDLNNLKEFKAYDNF----RLQRLHINGVNVCSIDLA-----SRRTL------SDINVAPCKHLEKLKLSGL 133 (226)
Q Consensus 73 ~l~----i~~~~~Lk~L~l~~c~----~l~~~~~~~~~L~~L~~~-----~~~~~------~~~~~~~~~~L~~L~L~~~ 133 (226)
... ..+|++|++|+++.+. .+..+.-.+++|++|++. +.... ....+.+|++|++|++++|
T Consensus 367 ~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~ 446 (592)
T 3ogk_B 367 QRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR 446 (592)
T ss_dssp HHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECC
T ss_pred HHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecC
Confidence 110 1125677777774332 111111135667777642 11100 0011345677777777654
Q ss_pred c--cCchhHHHHHhcCCCCcEEecccccc----ceeeccCccccceeEEcc-e--------EEEeCCCcceEEEeecc
Q 040388 134 Y--IIDECPSNQVSKLQFLEYLHIDCCMK----LRSAKISSRCLKKLFFKG-E--------FMLDTSNLSTFEYQGNL 196 (226)
Q Consensus 134 ~--it~~~~~~l~~~~~~Le~L~l~~C~~----L~~l~i~~~~L~~L~l~~-~--------~~i~~p~L~sl~~~g~~ 196 (226)
. +++..+..+...+++|+.|++++|.- +..+.-..++|++|++++ . ..-..|+|+.+...++.
T Consensus 447 ~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 447 QGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp GGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred CCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 3 66666666666677777777776531 111112335677777765 1 11246777777777664
No 14
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.34 E-value=1.2e-12 Score=113.88 Aligned_cols=182 Identities=18% Similarity=0.157 Sum_probs=87.5
Q ss_pred CCccEEEecccccccc--cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccC-------------CceEEe
Q 040388 11 ESIVVLELQFCKLESL--RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCG-------------GLKCLE 75 (226)
Q Consensus 11 ~sL~~L~L~~c~~~~~--~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~-------------~l~~l~ 75 (226)
+++++|+|++|.+... .....+++|++|+|+++.++.-. ...+.++++|++|++++|. +|+.++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE-IGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEEC-GGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccC-hhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 4555666666554421 12234556666666555542110 1123445555555555541 011111
Q ss_pred -------------cCCCCCcceEEeccCCCceEEEE----ecceeeEEEeCCCCccccccccCcccCcEEEeeccccCch
Q 040388 76 -------------LPDLNNLKEFKAYDNFRLQRLHI----NGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDE 138 (226)
Q Consensus 76 -------------i~~~~~Lk~L~l~~c~~l~~~~~----~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~ 138 (226)
+.++++|++|++++|..+..+.. ..++|++|++.+........+..+++|++|++++|.+++.
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEE
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCcc
Confidence 22345566666665544443321 2456666664332111111345566677777777766553
Q ss_pred hHHHHHhcCCCCcEEeccccccceeecc----CccccceeEEcc-eE-------EEeCCCcceEEEeec
Q 040388 139 CPSNQVSKLQFLEYLHIDCCMKLRSAKI----SSRCLKKLFFKG-EF-------MLDTSNLSTFEYQGN 195 (226)
Q Consensus 139 ~~~~l~~~~~~Le~L~l~~C~~L~~l~i----~~~~L~~L~l~~-~~-------~i~~p~L~sl~~~g~ 195 (226)
.. ..+..+++|+.|++.++ .++.+.. ..++|+.|++.+ .+ .-..++|+.+...++
T Consensus 223 ~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 223 RP-GSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp CT-TTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred Ch-hhhccCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCC
Confidence 22 23456677777777664 2333321 124566666665 11 122466777666665
No 15
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.31 E-value=6.2e-12 Score=107.52 Aligned_cols=62 Identities=13% Similarity=0.081 Sum_probs=37.0
Q ss_pred cccccCCccEEEecccccccc-cC-ccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeecc
Q 040388 6 VAFNAESIVVLELQFCKLESL-RN-NVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDC 68 (226)
Q Consensus 6 ~~~~~~sL~~L~L~~c~~~~~-~~-~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 68 (226)
.+..+++|++|++++|.+... +. ...+++|++|+|+++.++. ....++.++++|++|++++|
T Consensus 88 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~L~~n 151 (390)
T 3o6n_A 88 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNN 151 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSS
T ss_pred hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc-CCHHHhcCCCCCcEEECCCC
Confidence 445567777777777776532 22 2457777777777776531 11122456677777777765
No 16
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.31 E-value=4e-12 Score=106.00 Aligned_cols=180 Identities=16% Similarity=0.120 Sum_probs=111.4
Q ss_pred ccCCccEEEeccccccccc--CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEecCCCCCcceEE
Q 040388 9 NAESIVVLELQFCKLESLR--NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLELPDLNNLKEFK 86 (226)
Q Consensus 9 ~~~sL~~L~L~~c~~~~~~--~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~i~~~~~Lk~L~ 86 (226)
.+++|++|++++|.+.... ....+++|++|+|+++.+++.. . +.++++|++|++++|. +..+. .+++|+.|+
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~Ls~n~-l~~l~--~~~~L~~L~ 105 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNY-VQELL--VGPSIETLH 105 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE--E-ETTCTTCCEEECCSSE-EEEEE--ECTTCCEEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch--h-hhhcCCCCEEECcCCc-ccccc--CCCCcCEEE
Confidence 3567888888888876321 2346888888888888763211 1 6778888888888873 44333 237788888
Q ss_pred eccCCCceEEEE-ecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEecccccccee
Q 040388 87 AYDNFRLQRLHI-NGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRS 163 (226)
Q Consensus 87 l~~c~~l~~~~~-~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~ 163 (226)
+++|. +..+.. ..++|++|++.+. .......+..+++|++|++++|.+++..+..+...+++|+.|+++++. ++.
T Consensus 106 l~~n~-l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~ 183 (317)
T 3o53_A 106 AANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYD 183 (317)
T ss_dssp CCSSC-CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCE
T ss_pred CCCCc-cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Ccc
Confidence 87774 333322 3577888885442 222233456677888888888887765444555567888888887753 233
Q ss_pred ecc--CccccceeEEcc-e---E---EEeCCCcceEEEeecc
Q 040388 164 AKI--SSRCLKKLFFKG-E---F---MLDTSNLSTFEYQGNL 196 (226)
Q Consensus 164 l~i--~~~~L~~L~l~~-~---~---~i~~p~L~sl~~~g~~ 196 (226)
+.- ..++|+.|++.+ . + ....|+|+.+...++.
T Consensus 184 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 184 VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK 225 (317)
T ss_dssp EECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC
T ss_pred cccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCc
Confidence 221 134566666665 1 1 1234666666665553
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.31 E-value=1.8e-12 Score=112.77 Aligned_cols=63 Identities=19% Similarity=0.253 Sum_probs=39.4
Q ss_pred cccccCCccEEEecccccccc--cCccCCCcccEEEecceecCHHHHH-HHHhcCCccceeeeecc
Q 040388 6 VAFNAESIVVLELQFCKLESL--RNNVTLSSLRKLCSSHVYEDDQVIE-DFVAGCPLIEYMHVFDC 68 (226)
Q Consensus 6 ~~~~~~sL~~L~L~~c~~~~~--~~~~~l~sLk~L~L~~~~~~~~~l~-~l~~~cp~Le~L~l~~c 68 (226)
.+..+++|++|+|++|.+... ....++++|++|+|++|.+++..+. ..+.++++|++|++++|
T Consensus 74 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n 139 (455)
T 3v47_A 74 TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139 (455)
T ss_dssp TTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS
T ss_pred cccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC
Confidence 445677788888887776421 2334577777777777776443322 22556677777777765
No 18
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.31 E-value=1.1e-11 Score=108.48 Aligned_cols=80 Identities=14% Similarity=0.175 Sum_probs=41.9
Q ss_pred ccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE-ecCCCCCcceE
Q 040388 7 AFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL-ELPDLNNLKEF 85 (226)
Q Consensus 7 ~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l-~i~~~~~Lk~L 85 (226)
+..+++|++|++++|.+...+....+++|++|+++++.+++.. . +.++++|++|++++|. +..+ .+.++++|++|
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L 139 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT--P-LANLTNLTGLTLFNNQ-ITDIDPLKNLTNLNRL 139 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEE
T ss_pred hhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccCh--h-hcCCCCCCEEECCCCC-CCCChHHcCCCCCCEE
Confidence 4456677777777766543222445666666666666552211 1 5566666666666552 1111 13344555555
Q ss_pred EeccC
Q 040388 86 KAYDN 90 (226)
Q Consensus 86 ~l~~c 90 (226)
++++|
T Consensus 140 ~l~~n 144 (466)
T 1o6v_A 140 ELSSN 144 (466)
T ss_dssp EEEEE
T ss_pred ECCCC
Confidence 55444
No 19
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.30 E-value=9.3e-12 Score=103.52 Aligned_cols=164 Identities=16% Similarity=0.114 Sum_probs=115.5
Q ss_pred cccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE-ecCCCCCcce
Q 040388 6 VAFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL-ELPDLNNLKE 84 (226)
Q Consensus 6 ~~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l-~i~~~~~Lk~ 84 (226)
.+..+++|++|++++|.+...+....+++|++|+|+++.+++- . -+.++++|++|++++|.- ..+ .+.++++|++
T Consensus 58 ~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~ 133 (308)
T 1h6u_A 58 GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--S-AIAGLQSIKTLDLTSTQI-TDVTPLAGLSNLQV 133 (308)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCEEECTTSCC-CCCGGGTTCTTCCE
T ss_pred hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--h-hhcCCCCCCEEECCCCCC-CCchhhcCCCCCCE
Confidence 4667899999999999886433356799999999999988432 1 367899999999998842 222 3677899999
Q ss_pred EEeccCCCceEE--EEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccce
Q 040388 85 FKAYDNFRLQRL--HINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLR 162 (226)
Q Consensus 85 L~l~~c~~l~~~--~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~ 162 (226)
|++++|. +..+ ....++|++|++.+........+..+++|++|++++|.+++... +..+++|+.|++++|.- +
T Consensus 134 L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~N~l-~ 208 (308)
T 1h6u_A 134 LYLDLNQ-ITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQI-S 208 (308)
T ss_dssp EECCSSC-CCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECTTSCC-C
T ss_pred EECCCCc-cCcCccccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcChh---hcCCCCCCEEEccCCcc-C
Confidence 9999885 2211 12467888888554311111126788899999999998876432 57889999999988632 2
Q ss_pred ee-ccC-ccccceeEEcc
Q 040388 163 SA-KIS-SRCLKKLFFKG 178 (226)
Q Consensus 163 ~l-~i~-~~~L~~L~l~~ 178 (226)
.+ .+. .++|+.|++.+
T Consensus 209 ~~~~l~~l~~L~~L~l~~ 226 (308)
T 1h6u_A 209 DVSPLANTSNLFIVTLTN 226 (308)
T ss_dssp BCGGGTTCTTCCEEEEEE
T ss_pred ccccccCCCCCCEEEccC
Confidence 22 222 35788888876
No 20
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.30 E-value=2.9e-12 Score=119.00 Aligned_cols=152 Identities=14% Similarity=0.126 Sum_probs=92.4
Q ss_pred CCc--cccccCCccEEEeccccccc-ccC--ccCCCcccEEEecceecCHHHHH--HHHhcCCccceeeeeccCCceEEe
Q 040388 3 LPQ--VAFNAESIVVLELQFCKLES-LRN--NVTLSSLRKLCSSHVYEDDQVIE--DFVAGCPLIEYMHVFDCGGLKCLE 75 (226)
Q Consensus 3 lP~--~~~~~~sL~~L~L~~c~~~~-~~~--~~~l~sLk~L~L~~~~~~~~~l~--~l~~~cp~Le~L~l~~c~~l~~l~ 75 (226)
+|. .+..+++|++|++++|.+.. .+. ...+++|++|+|+++.+++.... ..+.+|++|++|++++|.-.....
T Consensus 116 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 195 (768)
T 3rgz_A 116 VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD 195 (768)
T ss_dssp GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB
T ss_pred CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC
Confidence 466 78899999999999998752 122 25789999999999988433222 237889999999999874322223
Q ss_pred cCCCCCcceEEeccCCC---ceEEEEecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCC
Q 040388 76 LPDLNNLKEFKAYDNFR---LQRLHINGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFL 150 (226)
Q Consensus 76 i~~~~~Lk~L~l~~c~~---l~~~~~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~L 150 (226)
...+++|++|++++|.. +.. ....++|++|++.+. .......+..+++|++|++++|.+++..+. ..+++|
T Consensus 196 ~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~---~~l~~L 271 (768)
T 3rgz_A 196 VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP---LPLKSL 271 (768)
T ss_dssp CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC---CCCTTC
T ss_pred cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCc---cccCCC
Confidence 45667777777777651 111 123566777764432 111122344555666666666555432211 144555
Q ss_pred cEEecccc
Q 040388 151 EYLHIDCC 158 (226)
Q Consensus 151 e~L~l~~C 158 (226)
+.|++.+|
T Consensus 272 ~~L~L~~n 279 (768)
T 3rgz_A 272 QYLSLAEN 279 (768)
T ss_dssp CEEECCSS
T ss_pred CEEECcCC
Confidence 55555543
No 21
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.30 E-value=1.2e-12 Score=117.47 Aligned_cols=170 Identities=16% Similarity=0.121 Sum_probs=109.8
Q ss_pred ccccCCccEEEeccccccc--ccCccCCCcccEEEecc-----------eecCHHHHHHHHhcCCccceeeeeccCCceE
Q 040388 7 AFNAESIVVLELQFCKLES--LRNNVTLSSLRKLCSSH-----------VYEDDQVIEDFVAGCPLIEYMHVFDCGGLKC 73 (226)
Q Consensus 7 ~~~~~sL~~L~L~~c~~~~--~~~~~~l~sLk~L~L~~-----------~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~ 73 (226)
+..+++|++|+++++.... ......+++|++|++++ +.+++..+..+..+||+|++|++ +|..+..
T Consensus 314 ~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~ 392 (592)
T 3ogk_B 314 IQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITN 392 (592)
T ss_dssp HTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCH
T ss_pred HHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccH
Confidence 4578999999999543321 11223589999999994 45588889999999999999999 4444321
Q ss_pred E---ecC-CCCCcceEEecc---CCCceEE---------EEecceeeEEEe---CCCCcc--ccccccCcccCcEEEeec
Q 040388 74 L---ELP-DLNNLKEFKAYD---NFRLQRL---------HINGVNVCSIDL---ASRRTL--SDINVAPCKHLEKLKLSG 132 (226)
Q Consensus 74 l---~i~-~~~~Lk~L~l~~---c~~l~~~---------~~~~~~L~~L~~---~~~~~~--~~~~~~~~~~L~~L~L~~ 132 (226)
- .+. +|++|++|+++. |..+++. ...+++|++|++ .|.... .......+++|++|++++
T Consensus 393 ~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~ 472 (592)
T 3ogk_B 393 ESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGY 472 (592)
T ss_dssp HHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECS
T ss_pred HHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccC
Confidence 1 122 267888888873 3334332 223678888885 221000 111123577888888888
Q ss_pred cccCchhHHHHHhcCCCCcEEeccccccceee-----ccCccccceeEEcc
Q 040388 133 LYIIDECPSNQVSKLQFLEYLHIDCCMKLRSA-----KISSRCLKKLFFKG 178 (226)
Q Consensus 133 ~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l-----~i~~~~L~~L~l~~ 178 (226)
|.+++..+..+..++++|+.|++++|. +..- .-..++|++|++.+
T Consensus 473 n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~ 522 (592)
T 3ogk_B 473 VGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQG 522 (592)
T ss_dssp CCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEES
T ss_pred CCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcC
Confidence 888776666777778888888888876 3221 11235678888775
No 22
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.30 E-value=1.7e-12 Score=116.96 Aligned_cols=186 Identities=17% Similarity=0.110 Sum_probs=86.9
Q ss_pred ccccCCccEEEecccccccc-cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE-----------
Q 040388 7 AFNAESIVVLELQFCKLESL-RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL----------- 74 (226)
Q Consensus 7 ~~~~~sL~~L~L~~c~~~~~-~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l----------- 74 (226)
+..+++|++|++++|.+... .....+++|++|+++++.+++.. ...+.++|+|++|++++|.....+
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLC-QISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGG-GGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCc-hhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 34466777777777665432 23345667777777766653211 122455566666666655321111
Q ss_pred ------------------ecCCCCCcceEEeccCCCceEEE----EecceeeEEEeCCC--C-ccccccccCcccCcEEE
Q 040388 75 ------------------ELPDLNNLKEFKAYDNFRLQRLH----INGVNVCSIDLASR--R-TLSDINVAPCKHLEKLK 129 (226)
Q Consensus 75 ------------------~i~~~~~Lk~L~l~~c~~l~~~~----~~~~~L~~L~~~~~--~-~~~~~~~~~~~~L~~L~ 129 (226)
.+.++++|++|++++|. +..+. ...++|++|++.+. . ......+..+++|++|+
T Consensus 353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431 (606)
T ss_dssp CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred CEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence 12334455555555442 11111 02345555553322 0 00111244556666666
Q ss_pred eeccccCchhHHHHHhcCCCCcEEeccccccce-ee----cc-CccccceeEEcc-e---E----EEeCCCcceEEEeec
Q 040388 130 LSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLR-SA----KI-SSRCLKKLFFKG-E---F----MLDTSNLSTFEYQGN 195 (226)
Q Consensus 130 L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~-~l----~i-~~~~L~~L~l~~-~---~----~i~~p~L~sl~~~g~ 195 (226)
+++|.++...+ ..+..+++|+.|++++|.--. .+ .+ ..++|+.|++.+ . + .-..|+|+.+...++
T Consensus 432 l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 432 LSHSLLDISSE-QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp CTTCCCBTTCT-TTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCCccCCcCH-HHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence 66665544322 223456666666666653211 01 01 124566666654 1 1 122456666666555
No 23
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.29 E-value=1.1e-12 Score=108.55 Aligned_cols=86 Identities=22% Similarity=0.194 Sum_probs=56.0
Q ss_pred CCCccccccCCccEEEecccccccccC--ccCCCcccEEEecceecCHH-HHHHHHhcCCccceeeeeccCCceEE--ec
Q 040388 2 NLPQVAFNAESIVVLELQFCKLESLRN--NVTLSSLRKLCSSHVYEDDQ-VIEDFVAGCPLIEYMHVFDCGGLKCL--EL 76 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~c~~~~~~~--~~~l~sLk~L~L~~~~~~~~-~l~~l~~~cp~Le~L~l~~c~~l~~l--~i 76 (226)
.+|..++ ++|++|++++|.+...+. ...+++|++|+|+++.++.. .......++++|++|++++|. +..+ .+
T Consensus 21 ~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~ 97 (306)
T 2z66_A 21 SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNF 97 (306)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEE
T ss_pred cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhc
Confidence 3565444 689999999998764332 35789999999999887421 111224468999999998874 2222 23
Q ss_pred CCCCCcceEEeccC
Q 040388 77 PDLNNLKEFKAYDN 90 (226)
Q Consensus 77 ~~~~~Lk~L~l~~c 90 (226)
.++++|++|+++++
T Consensus 98 ~~l~~L~~L~l~~n 111 (306)
T 2z66_A 98 LGLEQLEHLDFQHS 111 (306)
T ss_dssp ETCTTCCEEECTTS
T ss_pred CCCCCCCEEECCCC
Confidence 44566666666655
No 24
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.29 E-value=2.3e-12 Score=105.66 Aligned_cols=188 Identities=15% Similarity=0.109 Sum_probs=124.7
Q ss_pred CCccccccCCccEEEecccccccc--cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE---ecC
Q 040388 3 LPQVAFNAESIVVLELQFCKLESL--RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL---ELP 77 (226)
Q Consensus 3 lP~~~~~~~sL~~L~L~~c~~~~~--~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l---~i~ 77 (226)
+|..+ .++|++|++++|.+... .....+++|++|+++++.+++.. ...+.++++|++|++++|..+..+ .+.
T Consensus 26 ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~ 102 (285)
T 1ozn_A 26 VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPATFH 102 (285)
T ss_dssp CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTTTTT
T ss_pred CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCCCccccCHHHhc
Confidence 45433 36899999999987632 23457899999999998774321 223577899999999998655544 355
Q ss_pred CCCCcceEEeccCCCceEE----EEecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCc
Q 040388 78 DLNNLKEFKAYDNFRLQRL----HINGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLE 151 (226)
Q Consensus 78 ~~~~Lk~L~l~~c~~l~~~----~~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le 151 (226)
++++|++|++++|. +..+ ....++|++|++.+. .......+..+++|++|++++|.++... ...+..+++|+
T Consensus 103 ~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~ 180 (285)
T 1ozn_A 103 GLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP-ERAFRGLHSLD 180 (285)
T ss_dssp TCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCC
T ss_pred CCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC-HHHhcCccccC
Confidence 67899999998884 2222 113578888885543 1112223567888999999998877532 23356788999
Q ss_pred EEeccccccceeec---cC-ccccceeEEcc-e---E----EEeCCCcceEEEeecc
Q 040388 152 YLHIDCCMKLRSAK---IS-SRCLKKLFFKG-E---F----MLDTSNLSTFEYQGNL 196 (226)
Q Consensus 152 ~L~l~~C~~L~~l~---i~-~~~L~~L~l~~-~---~----~i~~p~L~sl~~~g~~ 196 (226)
.|+++++. ++.+. +. .++|+.|++.+ . + .-..|+|+.+...++.
T Consensus 181 ~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 181 RLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp EEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred EEECCCCc-ccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 99998864 33331 11 25788888876 1 1 1235788888887774
No 25
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.28 E-value=8.7e-12 Score=112.24 Aligned_cols=199 Identities=12% Similarity=0.052 Sum_probs=106.7
Q ss_pred ccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEecCCCCCcceEE
Q 040388 7 AFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLELPDLNNLKEFK 86 (226)
Q Consensus 7 ~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~i~~~~~Lk~L~ 86 (226)
+..+++|++|++++|.+...+....+++|++|++++|.+ ..+..+ .+|.|++|++++|..+....+..+++|++|+
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l--~~lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ 356 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL--KQFPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLD 356 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC--SSCCCC--CCSSCCEEEEESCSSCEECCCCCCTTCCEEE
T ss_pred cccCCCCCEEEecCccchhhhhccccccCCEEEcccccC--cccccC--CCCccceeeccCCcCccchhhccCCCCCEEE
Confidence 445678888888888775444445677888888888876 222232 7788888888877665555555666667666
Q ss_pred eccCCCceEEE------EecceeeEEEeCCC-------------------------Ccccc-ccccCcccCcEEEeeccc
Q 040388 87 AYDNFRLQRLH------INGVNVCSIDLASR-------------------------RTLSD-INVAPCKHLEKLKLSGLY 134 (226)
Q Consensus 87 l~~c~~l~~~~------~~~~~L~~L~~~~~-------------------------~~~~~-~~~~~~~~L~~L~L~~~~ 134 (226)
+++|. +..+. ...++|++|++.+. ..... ..+..+++|++|++++|.
T Consensus 357 ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 435 (606)
T 3vq2_A 357 LSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435 (606)
T ss_dssp CCSSC-EEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSC
T ss_pred CcCCc-cCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCC
Confidence 66663 22221 12345555553221 00001 123445555555555555
Q ss_pred cCchhHHHHHhcCCCCcEEecccccccee-ec--c-CccccceeEEcc-e---E----EEeCCCcceEEEeecce----e
Q 040388 135 IIDECPSNQVSKLQFLEYLHIDCCMKLRS-AK--I-SSRCLKKLFFKG-E---F----MLDTSNLSTFEYQGNLV----S 198 (226)
Q Consensus 135 it~~~~~~l~~~~~~Le~L~l~~C~~L~~-l~--i-~~~~L~~L~l~~-~---~----~i~~p~L~sl~~~g~~~----~ 198 (226)
++...+ ..+..+++|+.|++++|..-.. +. + ..++|+.|++.+ . . .-..++|+++...++.+ |
T Consensus 436 l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 514 (606)
T 3vq2_A 436 TKIDFD-GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 514 (606)
T ss_dssp CEECCT-TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEG
T ss_pred CCccch-hhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCH
Confidence 443322 2234556666666665532211 11 1 124677777665 1 1 12346777777766642 2
Q ss_pred ecc-ccccceeeeE
Q 040388 199 FSS-NALALSQIIL 211 (226)
Q Consensus 199 ~~~-~~~~l~~~~~ 211 (226)
... +.+.|+.+.+
T Consensus 515 ~~~~~l~~L~~L~l 528 (606)
T 3vq2_A 515 SHYNQLYSLSTLDC 528 (606)
T ss_dssp GGTTTCTTCCEEEC
T ss_pred HHccCCCcCCEEEC
Confidence 222 4455666555
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.28 E-value=8.2e-12 Score=109.38 Aligned_cols=181 Identities=16% Similarity=0.124 Sum_probs=82.9
Q ss_pred ccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCC-----------ceEEe
Q 040388 7 AFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGG-----------LKCLE 75 (226)
Q Consensus 7 ~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~-----------l~~l~ 75 (226)
+..+++|++|++++|.+...+....+++|++|+++++.+++... +..+++|++|++++|.- ++.++
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~ 249 (466)
T 1o6v_A 173 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIGTLASLTNLTDLD 249 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEE
T ss_pred hccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccchhhhcCCCCCEEE
Confidence 34455666666666655432223345566666666555422110 34455555555555421 11111
Q ss_pred -----------cCCCCCcceEEeccCC--CceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHH
Q 040388 76 -----------LPDLNNLKEFKAYDNF--RLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSN 142 (226)
Q Consensus 76 -----------i~~~~~Lk~L~l~~c~--~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~ 142 (226)
+.++++|+.|++++|. .+.. ....++|++|++.+........+..+++|++|++++|.+++...
T Consensus 250 l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-- 326 (466)
T 1o6v_A 250 LANNQISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-- 326 (466)
T ss_dssp CCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG--
T ss_pred CCCCccccchhhhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh--
Confidence 2233444444444442 1111 01234555555333210001114455666666666666655332
Q ss_pred HHhcCCCCcEEeccccccceeec-c-CccccceeEEcc-e-----EEEeCCCcceEEEeec
Q 040388 143 QVSKLQFLEYLHIDCCMKLRSAK-I-SSRCLKKLFFKG-E-----FMLDTSNLSTFEYQGN 195 (226)
Q Consensus 143 l~~~~~~Le~L~l~~C~~L~~l~-i-~~~~L~~L~l~~-~-----~~i~~p~L~sl~~~g~ 195 (226)
+..+++|+.|++.+|. ++.+. + ..++|+.|++.+ . .....|+|+.+...++
T Consensus 327 -~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 327 -VSSLTKLQRLFFYNNK-VSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ 385 (466)
T ss_dssp -GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCE
T ss_pred -hccCccCCEeECCCCc-cCCchhhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCC
Confidence 3456666666666652 22221 1 124566666664 1 1233466666666554
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.27 E-value=3e-11 Score=104.97 Aligned_cols=38 Identities=24% Similarity=0.116 Sum_probs=17.5
Q ss_pred cCcccCcEEEeeccccCchhHHHHHhcCCCCcEEecccc
Q 040388 120 APCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCC 158 (226)
Q Consensus 120 ~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C 158 (226)
..+++|++|++++|.+++... ..+..+++|+.|++++|
T Consensus 296 ~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N 333 (455)
T 3v47_A 296 SHFTDLEQLTLAQNEINKIDD-NAFWGLTHLLKLNLSQN 333 (455)
T ss_dssp TTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSS
T ss_pred ccCCCCCEEECCCCcccccCh-hHhcCcccCCEEECCCC
Confidence 344455555555555443221 12234455555555553
No 28
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.27 E-value=1.4e-12 Score=116.99 Aligned_cols=172 Identities=16% Similarity=0.144 Sum_probs=102.2
Q ss_pred ccccccCCccEEEecccccccc---cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeec--------------
Q 040388 5 QVAFNAESIVVLELQFCKLESL---RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFD-------------- 67 (226)
Q Consensus 5 ~~~~~~~sL~~L~L~~c~~~~~---~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~-------------- 67 (226)
..+..+++|++|++++|.+... .....+++|++|+++++ +++..+..+..+||+|++|++.+
T Consensus 283 ~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~ 361 (594)
T 2p1m_B 283 AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTE 361 (594)
T ss_dssp GGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCH
T ss_pred HHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCH
Confidence 3333578888888888875421 11236788888888887 66777777777888888888833
Q ss_pred ---------cCCceEEecC--------------CCCCcceEEec-----cCCCceEE---------EEecceeeEEEeCC
Q 040388 68 ---------CGGLKCLELP--------------DLNNLKEFKAY-----DNFRLQRL---------HINGVNVCSIDLAS 110 (226)
Q Consensus 68 ---------c~~l~~l~i~--------------~~~~Lk~L~l~-----~c~~l~~~---------~~~~~~L~~L~~~~ 110 (226)
|++|+.+.+. .|++|++|+++ +|..+... ...+++|++|++.+
T Consensus 362 ~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 362 QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC
Confidence 2334444221 25666666666 33333311 11346666666544
Q ss_pred CCcc--ccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEecccccccee-----eccCccccceeEEcc
Q 040388 111 RRTL--SDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRS-----AKISSRCLKKLFFKG 178 (226)
Q Consensus 111 ~~~~--~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~-----l~i~~~~L~~L~l~~ 178 (226)
.... .......+++|++|++++|.+++..+..+...+++|+.|++.+|.. .. +.-..++|+.|++.+
T Consensus 442 ~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~ 515 (594)
T 2p1m_B 442 LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSS 515 (594)
T ss_dssp SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEES
T ss_pred cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeC
Confidence 2100 0001123667778888777777766666666778888888877754 21 111235677777765
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.27 E-value=2.9e-12 Score=112.29 Aligned_cols=78 Identities=14% Similarity=0.141 Sum_probs=39.3
Q ss_pred CCccEEEecccccccc--cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE---ecCCCCCcceE
Q 040388 11 ESIVVLELQFCKLESL--RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL---ELPDLNNLKEF 85 (226)
Q Consensus 11 ~sL~~L~L~~c~~~~~--~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l---~i~~~~~Lk~L 85 (226)
+++++|+|++|.+... .....+++|++|+|+++.+++-. ...+.++++|++|++++|. +..+ .+.++++|++|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE-PGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKL 109 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeC-hhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEE
Confidence 4566666666665421 22335666666666666552211 1124556666666666552 2211 12344555555
Q ss_pred EeccC
Q 040388 86 KAYDN 90 (226)
Q Consensus 86 ~l~~c 90 (226)
++++|
T Consensus 110 ~Ls~n 114 (477)
T 2id5_A 110 DISEN 114 (477)
T ss_dssp ECTTS
T ss_pred ECCCC
Confidence 55554
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.26 E-value=7.2e-12 Score=109.85 Aligned_cols=164 Identities=16% Similarity=0.189 Sum_probs=117.4
Q ss_pred CccccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEecCCCCCcc
Q 040388 4 PQVAFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLELPDLNNLK 83 (226)
Q Consensus 4 P~~~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~i~~~~~Lk 83 (226)
|..+..+++|++|++++|.+...+....+++|++|+|+++.+++- . +..+++|++|++++|. +..+.++++++|+
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~--~--~~~l~~L~~L~Ls~N~-l~~~~~~~l~~L~ 109 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL--D--LSQNTNLTYLACDSNK-LTNLDVTPLTKLT 109 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCC--C--CTTCTTCSEEECCSSC-CSCCCCTTCTTCC
T ss_pred ccChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeE--c--cccCCCCCEEECcCCC-CceeecCCCCcCC
Confidence 345667899999999999886444556799999999999988442 1 6789999999999984 4445688899999
Q ss_pred eEEeccCCCceEEEE-ecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccce
Q 040388 84 EFKAYDNFRLQRLHI-NGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLR 162 (226)
Q Consensus 84 ~L~l~~c~~l~~~~~-~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~ 162 (226)
+|++++|. +..+.+ ..++|++|+..+.. ...+.++.+++|++|++++|...... . +..+++|+.|+++++ .++
T Consensus 110 ~L~L~~N~-l~~l~~~~l~~L~~L~l~~N~-l~~l~l~~l~~L~~L~l~~n~~~~~~--~-~~~l~~L~~L~ls~n-~l~ 183 (457)
T 3bz5_A 110 YLNCDTNK-LTKLDVSQNPLLTYLNCARNT-LTEIDVSHNTQLTELDCHLNKKITKL--D-VTPQTQLTTLDCSFN-KIT 183 (457)
T ss_dssp EEECCSSC-CSCCCCTTCTTCCEEECTTSC-CSCCCCTTCTTCCEEECTTCSCCCCC--C-CTTCTTCCEEECCSS-CCC
T ss_pred EEECCCCc-CCeecCCCCCcCCEEECCCCc-cceeccccCCcCCEEECCCCCccccc--c-cccCCcCCEEECCCC-ccc
Confidence 99999984 333333 46889999965431 11235778999999999999533322 1 467899999999875 333
Q ss_pred eeccC-ccccceeEEcc
Q 040388 163 SAKIS-SRCLKKLFFKG 178 (226)
Q Consensus 163 ~l~i~-~~~L~~L~l~~ 178 (226)
.+.+. .++|+.|++.+
T Consensus 184 ~l~l~~l~~L~~L~l~~ 200 (457)
T 3bz5_A 184 ELDVSQNKLLNRLNCDT 200 (457)
T ss_dssp CCCCTTCTTCCEEECCS
T ss_pred eeccccCCCCCEEECcC
Confidence 33332 23455555543
No 31
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.26 E-value=1e-11 Score=108.34 Aligned_cols=166 Identities=17% Similarity=0.081 Sum_probs=99.1
Q ss_pred ccCCccEEEecccccccc-cC-ccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe---cCCCCCcc
Q 040388 9 NAESIVVLELQFCKLESL-RN-NVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---LPDLNNLK 83 (226)
Q Consensus 9 ~~~sL~~L~L~~c~~~~~-~~-~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---i~~~~~Lk 83 (226)
.+++|++|+|++|.+... +. ...+++|++|+|+++.++.- ....+.++++|++|++++|..+..+. +.++++|+
T Consensus 121 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~ 199 (452)
T 3zyi_A 121 GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESI-PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK 199 (452)
T ss_dssp TCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCC
T ss_pred CcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCccee-CHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCC
Confidence 344444444444444321 11 22345555555555544210 01124455666666666665555553 44678999
Q ss_pred eEEeccCCCceEEE--EecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccc
Q 040388 84 EFKAYDNFRLQRLH--INGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCM 159 (226)
Q Consensus 84 ~L~l~~c~~l~~~~--~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~ 159 (226)
.|++++|. +..+. ...++|++|++.+. .......+..+++|++|++++|.++.... ..+..+++|+.|+++++
T Consensus 200 ~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N- 276 (452)
T 3zyi_A 200 YLNLGMCN-IKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER-NAFDGLASLVELNLAHN- 276 (452)
T ss_dssp EEECTTSC-CSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSS-
T ss_pred EEECCCCc-ccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECH-HHhcCCCCCCEEECCCC-
Confidence 99999885 22221 14578999996553 22223356788999999999998876533 33578899999999986
Q ss_pred cceeecc----CccccceeEEcc
Q 040388 160 KLRSAKI----SSRCLKKLFFKG 178 (226)
Q Consensus 160 ~L~~l~i----~~~~L~~L~l~~ 178 (226)
.++.+.. ..++|+.|++.+
T Consensus 277 ~l~~~~~~~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 277 NLSSLPHDLFTPLRYLVELHLHH 299 (452)
T ss_dssp CCSCCCTTSSTTCTTCCEEECCS
T ss_pred cCCccChHHhccccCCCEEEccC
Confidence 4444432 135788888876
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.25 E-value=1.8e-11 Score=110.58 Aligned_cols=62 Identities=13% Similarity=0.081 Sum_probs=38.2
Q ss_pred cccccCCccEEEecccccccc-cC-ccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeecc
Q 040388 6 VAFNAESIVVLELQFCKLESL-RN-NVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDC 68 (226)
Q Consensus 6 ~~~~~~sL~~L~L~~c~~~~~-~~-~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 68 (226)
.+..+++|++|+|++|.+... +. ...+++|++|+|+++.++. ....++.++++|+.|++++|
T Consensus 94 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~Ls~N 157 (597)
T 3oja_B 94 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNN 157 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSS
T ss_pred HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC-CCHHHhccCCCCCEEEeeCC
Confidence 555677777777777776532 22 2457777777777776631 11223456677777777766
No 33
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.25 E-value=4.7e-12 Score=103.32 Aligned_cols=178 Identities=19% Similarity=0.164 Sum_probs=124.8
Q ss_pred ccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe---cCCCCCcceE
Q 040388 9 NAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---LPDLNNLKEF 85 (226)
Q Consensus 9 ~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---i~~~~~Lk~L 85 (226)
..++|++|.+++|.+...+....+++|++|+++++.+++- . -+.++++|++|++++|. +..+. +.++++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--S-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--G-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--h-hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEE
Confidence 5678999999999876545556799999999999988431 1 36788999999999873 33332 4668899999
Q ss_pred EeccCCCceEEE----EecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccc
Q 040388 86 KAYDNFRLQRLH----INGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCM 159 (226)
Q Consensus 86 ~l~~c~~l~~~~----~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~ 159 (226)
++++|. +..+. ...++|++|++.+. .......+..+++|++|++++|.+++.. ...+..+++|+.|++.++.
T Consensus 115 ~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 115 VLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP-EGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp ECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred ECCCCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC-HHHhcCCccCCEEECCCCc
Confidence 999885 33222 13578999985543 2112223567889999999999887543 3445778999999999864
Q ss_pred cceeec---cC-ccccceeEEcc-eEEEeCCCcceEEEe
Q 040388 160 KLRSAK---IS-SRCLKKLFFKG-EFMLDTSNLSTFEYQ 193 (226)
Q Consensus 160 ~L~~l~---i~-~~~L~~L~l~~-~~~i~~p~L~sl~~~ 193 (226)
++.+. +. .++|+.|++.+ .+.-++|+++.+...
T Consensus 193 -l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~ 230 (272)
T 3rfs_A 193 -LKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEW 230 (272)
T ss_dssp -CSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHH
T ss_pred -CCccCHHHHhCCcCCCEEEccCCCccccCcHHHHHHHH
Confidence 33332 12 35788888877 455567777765443
No 34
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.24 E-value=1.7e-11 Score=110.28 Aligned_cols=78 Identities=13% Similarity=0.064 Sum_probs=55.3
Q ss_pred CccEEEecccccccc-c-CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCC--ceEEecCCCCCcceEEe
Q 040388 12 SIVVLELQFCKLESL-R-NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGG--LKCLELPDLNNLKEFKA 87 (226)
Q Consensus 12 sL~~L~L~~c~~~~~-~-~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~--l~~l~i~~~~~Lk~L~l 87 (226)
+|++|++++|.+... + ....+++|++|+++++.++ .+..-+.++++|++|++++|.- +....+.++++|++|++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS--ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS--CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC--CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEEC
Confidence 799999999987643 2 2457899999999999874 2222367889999999998842 11123445667777777
Q ss_pred ccCC
Q 040388 88 YDNF 91 (226)
Q Consensus 88 ~~c~ 91 (226)
++|.
T Consensus 333 ~~n~ 336 (606)
T 3t6q_A 333 KGNT 336 (606)
T ss_dssp CSCS
T ss_pred CCCC
Confidence 6664
No 35
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.23 E-value=2.2e-11 Score=102.77 Aligned_cols=150 Identities=12% Similarity=0.109 Sum_probs=91.7
Q ss_pred cccccCCccEEEecccccccc-c-CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE----ecCCC
Q 040388 6 VAFNAESIVVLELQFCKLESL-R-NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL----ELPDL 79 (226)
Q Consensus 6 ~~~~~~sL~~L~L~~c~~~~~-~-~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l----~i~~~ 79 (226)
.+..+++|++|++++|.+... + ....+++|++|+|+++.++. .....+.++++|++|+++++. +..+ .+.++
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l 148 (353)
T 2z80_A 71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHL 148 (353)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS-CCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTC
T ss_pred HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc-CCHhHhCCCccCCEEECCCCC-CcccCchhhhccC
Confidence 344566777777777765422 1 23456777777777776632 112235667777777777662 2121 24457
Q ss_pred CCcceEEeccCCCceEEE----EecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEE
Q 040388 80 NNLKEFKAYDNFRLQRLH----INGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYL 153 (226)
Q Consensus 80 ~~Lk~L~l~~c~~l~~~~----~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L 153 (226)
++|++|++++|..+..+. ...++|++|++.+. .......+..+++|++|++++|.++.. ....+..+++|+.|
T Consensus 149 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L 227 (353)
T 2z80_A 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL-LEIFVDVTSSVECL 227 (353)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTH-HHHHHHHTTTEEEE
T ss_pred CCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccc-hhhhhhhcccccEE
Confidence 888888888875444432 13567888874332 211233456778888888888887543 34455668888888
Q ss_pred ecccc
Q 040388 154 HIDCC 158 (226)
Q Consensus 154 ~l~~C 158 (226)
+++++
T Consensus 228 ~L~~n 232 (353)
T 2z80_A 228 ELRDT 232 (353)
T ss_dssp EEESC
T ss_pred ECCCC
Confidence 88875
No 36
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.22 E-value=2.1e-11 Score=100.58 Aligned_cols=161 Identities=18% Similarity=0.175 Sum_probs=108.0
Q ss_pred ccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE-ecCCCCCcceEEe
Q 040388 9 NAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL-ELPDLNNLKEFKA 87 (226)
Q Consensus 9 ~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l-~i~~~~~Lk~L~l 87 (226)
.+++|++|++++|.+...+....+++|++|+|+++.+++-. . +.++++|++|++++|. +..+ .+.++++|++|++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L 119 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSL 119 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEEC
T ss_pred hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCc--c-cccCCCCCEEECCCCc-CCCChhhccCCCCCEEEC
Confidence 46788999999988765445556889999999998874321 1 7788999999998874 2222 2566788888888
Q ss_pred ccCCCceEEE--EecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccceeec
Q 040388 88 YDNFRLQRLH--INGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAK 165 (226)
Q Consensus 88 ~~c~~l~~~~--~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~ 165 (226)
++|. +..+. ...++|++|++.+........+..+++|++|++++|.+++... +..+++|+.|+++++ .++.+.
T Consensus 120 ~~n~-i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N-~i~~l~ 194 (291)
T 1h6t_A 120 EHNG-ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKN-HISDLR 194 (291)
T ss_dssp TTSC-CCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSS-CCCBCG
T ss_pred CCCc-CCCChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchh---hcCCCccCEEECCCC-cCCCCh
Confidence 8874 22221 1357788888544311111245677888888888888876432 577888888888875 333332
Q ss_pred -c-CccccceeEEcc
Q 040388 166 -I-SSRCLKKLFFKG 178 (226)
Q Consensus 166 -i-~~~~L~~L~l~~ 178 (226)
+ ..++|+.|++.+
T Consensus 195 ~l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 195 ALAGLKNLDVLELFS 209 (291)
T ss_dssp GGTTCTTCSEEEEEE
T ss_pred hhccCCCCCEEECcC
Confidence 2 225677787775
No 37
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.22 E-value=1.8e-11 Score=106.41 Aligned_cols=166 Identities=17% Similarity=0.135 Sum_probs=96.4
Q ss_pred ccCCccEEEecccccccc-c-CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe---cCCCCCcc
Q 040388 9 NAESIVVLELQFCKLESL-R-NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---LPDLNNLK 83 (226)
Q Consensus 9 ~~~sL~~L~L~~c~~~~~-~-~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---i~~~~~Lk 83 (226)
.+++|++|+|++|.+... + ....+++|++|+|+++.++.- ....+.++++|++|++++|..+..+. +.++++|+
T Consensus 110 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~ 188 (440)
T 3zyj_A 110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESI-PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR 188 (440)
T ss_dssp TCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEE-CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCC
T ss_pred CCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccccc-CHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccC
Confidence 344455555554444321 1 123445555555555544210 01123455666666666655555442 34578999
Q ss_pred eEEeccCCCceEEE--EecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccc
Q 040388 84 EFKAYDNFRLQRLH--INGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCM 159 (226)
Q Consensus 84 ~L~l~~c~~l~~~~--~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~ 159 (226)
.|++++|. +..+. ...++|++|++.+. .......+..+++|++|++++|.+++... ..+..+++|+.|+++++
T Consensus 189 ~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N- 265 (440)
T 3zyj_A 189 YLNLAMCN-LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER-NAFDNLQSLVEINLAHN- 265 (440)
T ss_dssp EEECTTSC-CSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TSSTTCTTCCEEECTTS-
T ss_pred eecCCCCc-CccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEECh-hhhcCCCCCCEEECCCC-
Confidence 99999885 22221 24578888886543 22223356788899999999998876532 33567889999999885
Q ss_pred cceeecc----CccccceeEEcc
Q 040388 160 KLRSAKI----SSRCLKKLFFKG 178 (226)
Q Consensus 160 ~L~~l~i----~~~~L~~L~l~~ 178 (226)
.++.+.. ..++|+.|++.+
T Consensus 266 ~l~~~~~~~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 266 NLTLLPHDLFTPLHHLERIHLHH 288 (440)
T ss_dssp CCCCCCTTTTSSCTTCCEEECCS
T ss_pred CCCccChhHhccccCCCEEEcCC
Confidence 4444432 125688888765
No 38
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.22 E-value=6.8e-12 Score=112.97 Aligned_cols=81 Identities=16% Similarity=0.037 Sum_probs=40.4
Q ss_pred ccCCccEEEecccccccccCccCCCcccEEEecceecCHH-HHHHHHhcCCccceeeeeccCCceEE--ecCCCCCcceE
Q 040388 9 NAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQ-VIEDFVAGCPLIEYMHVFDCGGLKCL--ELPDLNNLKEF 85 (226)
Q Consensus 9 ~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~-~l~~l~~~cp~Le~L~l~~c~~l~~l--~i~~~~~Lk~L 85 (226)
.+++|++|++++|..........+++|++|+++++.++.. .+...+.+++.|++|++++|. +..+ .+.++++|+.|
T Consensus 326 ~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L 404 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHL 404 (606)
T ss_dssp CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEE
T ss_pred CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCee
Confidence 4444555555544322111223566677777766655211 112335667777777777763 2222 23344555555
Q ss_pred EeccC
Q 040388 86 KAYDN 90 (226)
Q Consensus 86 ~l~~c 90 (226)
++++|
T Consensus 405 ~l~~n 409 (606)
T 3vq2_A 405 DFQHS 409 (606)
T ss_dssp ECTTS
T ss_pred ECCCC
Confidence 55554
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.21 E-value=2.7e-11 Score=106.14 Aligned_cols=65 Identities=15% Similarity=0.099 Sum_probs=31.4
Q ss_pred CCccc-cccCCccEEEecccccccc--cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeecc
Q 040388 3 LPQVA-FNAESIVVLELQFCKLESL--RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDC 68 (226)
Q Consensus 3 lP~~~-~~~~sL~~L~L~~c~~~~~--~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 68 (226)
+|... ..+++|++|+|++|.+... .....+++|+.|+++++.++... ...+.++++|++|++++|
T Consensus 95 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n 162 (477)
T 2id5_A 95 IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYIS-HRAFSGLNSLEQLTLEKC 162 (477)
T ss_dssp CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEEC-TTSSTTCTTCCEEEEESC
T ss_pred cCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeC-hhhccCCCCCCEEECCCC
Confidence 34433 3466777777776665421 12234566666666555442110 011334555555555544
No 40
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.21 E-value=1.4e-11 Score=98.36 Aligned_cols=164 Identities=10% Similarity=0.021 Sum_probs=109.1
Q ss_pred CCccEEEecccccccc-c-CccCCCcccEEEeccee-cCHHHHHHHHhcCCccceeeeeccCCceEEe---cCCCCCcce
Q 040388 11 ESIVVLELQFCKLESL-R-NNVTLSSLRKLCSSHVY-EDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---LPDLNNLKE 84 (226)
Q Consensus 11 ~sL~~L~L~~c~~~~~-~-~~~~l~sLk~L~L~~~~-~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---i~~~~~Lk~ 84 (226)
++|++|++++|.+... + ....+++|++|+++++. ++.- ....+.++++|++|++++|..++.+. +.++++|++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 4899999999987643 2 34578999999999986 5211 01135788999999999977777664 346889999
Q ss_pred EEeccCC--CceEEEEecceee---EEEeCCC---CccccccccCcccCc-EEEeeccccCchhHHHHHhcCCCCcEEec
Q 040388 85 FKAYDNF--RLQRLHINGVNVC---SIDLASR---RTLSDINVAPCKHLE-KLKLSGLYIIDECPSNQVSKLQFLEYLHI 155 (226)
Q Consensus 85 L~l~~c~--~l~~~~~~~~~L~---~L~~~~~---~~~~~~~~~~~~~L~-~L~L~~~~it~~~~~~l~~~~~~Le~L~l 155 (226)
|++++|. .+.. ....++|+ ++++.+. .......+..+++|+ +|++++|.++.- ....+.. ++|+.|++
T Consensus 110 L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i-~~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 110 LGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV-QGYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE-CTTTTTT-CEEEEEEC
T ss_pred EeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc-CHhhcCC-CCCCEEEc
Confidence 9999874 2222 12345666 7774332 111222366788888 999988887642 2233334 78899999
Q ss_pred cccccceeecc---C-c-cccceeEEcc
Q 040388 156 DCCMKLRSAKI---S-S-RCLKKLFFKG 178 (226)
Q Consensus 156 ~~C~~L~~l~i---~-~-~~L~~L~l~~ 178 (226)
.++..++.+.. . . ++|+.|++.+
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCC
Confidence 88766666642 2 2 4677777765
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.20 E-value=1.5e-10 Score=98.85 Aligned_cols=65 Identities=14% Similarity=0.144 Sum_probs=42.6
Q ss_pred CCcccc-ccCCccEEEecccccccc--cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeecc
Q 040388 3 LPQVAF-NAESIVVLELQFCKLESL--RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDC 68 (226)
Q Consensus 3 lP~~~~-~~~sL~~L~L~~c~~~~~--~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 68 (226)
+|..++ .+++|++|++++|.+... .....+++|++|+|+++.++.. ....+.++++|++|++++|
T Consensus 60 l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n 127 (390)
T 3o6n_A 60 LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERN 127 (390)
T ss_dssp ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC-CHHHhcCCCCCCEEECCCC
Confidence 455544 467888888888876532 2334678888888888776321 1223566788888888776
No 42
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.20 E-value=1e-11 Score=101.36 Aligned_cols=164 Identities=16% Similarity=0.094 Sum_probs=116.4
Q ss_pred cccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe---cCCCCCc
Q 040388 6 VAFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---LPDLNNL 82 (226)
Q Consensus 6 ~~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---i~~~~~L 82 (226)
.+..+++|++|++++|.+...+....+++|++|+++++.+++- ....+.++++|++|++++|. +..+. +.++++|
T Consensus 58 ~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L 135 (272)
T 3rfs_A 58 GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNL 135 (272)
T ss_dssp TGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTC
T ss_pred ccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCC
Confidence 4667899999999999986544456799999999999987421 12335788999999999984 33332 5668999
Q ss_pred ceEEeccCCCceEEE----EecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEecc
Q 040388 83 KEFKAYDNFRLQRLH----INGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHID 156 (226)
Q Consensus 83 k~L~l~~c~~l~~~~----~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~ 156 (226)
+.|++++|. +..+. ...++|++|++.+. .......+..+++|++|++++|.+++.. ...+..+++|+.|++.
T Consensus 136 ~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~ 213 (272)
T 3rfs_A 136 TYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSLQYIWLH 213 (272)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECC
T ss_pred CEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC-HHHHhCCcCCCEEEcc
Confidence 999999984 33322 24689999995543 2222223578899999999999987643 3445788999999998
Q ss_pred ccccceeeccCccccceeEEc
Q 040388 157 CCMKLRSAKISSRCLKKLFFK 177 (226)
Q Consensus 157 ~C~~L~~l~i~~~~L~~L~l~ 177 (226)
+++.. -.++.++.+.+.
T Consensus 214 ~N~~~----~~~~~l~~l~~~ 230 (272)
T 3rfs_A 214 DNPWD----CTCPGIRYLSEW 230 (272)
T ss_dssp SSCBC----CCTTTTHHHHHH
T ss_pred CCCcc----ccCcHHHHHHHH
Confidence 86432 123345555543
No 43
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.20 E-value=4.1e-11 Score=106.86 Aligned_cols=103 Identities=14% Similarity=0.011 Sum_probs=51.4
Q ss_pred hcCCccceeeeeccCCceE----EecCCCCCcceEEeccCCCceEE---EEecceeeEEEeCCC---CccccccccCccc
Q 040388 55 AGCPLIEYMHVFDCGGLKC----LELPDLNNLKEFKAYDNFRLQRL---HINGVNVCSIDLASR---RTLSDINVAPCKH 124 (226)
Q Consensus 55 ~~cp~Le~L~l~~c~~l~~----l~i~~~~~Lk~L~l~~c~~l~~~---~~~~~~L~~L~~~~~---~~~~~~~~~~~~~ 124 (226)
..+|+|++|++++|.--.. -.+.++++|++|++++|. +..+ ...+++|++|++.+. .......+..+++
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 422 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCc-cccccccccccCCCCEEEccCCccccccchhhhhcCCC
Confidence 4455666666655531110 113345677777777664 2221 224566777774442 1111123455666
Q ss_pred CcEEEeeccccCchhHHHHHhcCCCCcEEeccccc
Q 040388 125 LEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCM 159 (226)
Q Consensus 125 L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~ 159 (226)
|++|++++|.++.... ..+..+++|+.|++.+|.
T Consensus 423 L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~ 456 (570)
T 2z63_A 423 LIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGNS 456 (570)
T ss_dssp CCEEECTTSCCEECCT-TTTTTCTTCCEEECTTCE
T ss_pred CCEEeCcCCcccccch-hhhhcCCcCcEEECcCCc
Confidence 6666666665544322 223456666666666653
No 44
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.19 E-value=8e-12 Score=111.46 Aligned_cols=183 Identities=17% Similarity=0.156 Sum_probs=114.5
Q ss_pred CCccEEEecccccccccCccCCCcccEEEecceecCHH-HHHHHHhcCCccceeeeeccCCceEE--ecCCCCCcceEEe
Q 040388 11 ESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQ-VIEDFVAGCPLIEYMHVFDCGGLKCL--ELPDLNNLKEFKA 87 (226)
Q Consensus 11 ~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~-~l~~l~~~cp~Le~L~l~~c~~l~~l--~i~~~~~Lk~L~l 87 (226)
++|++|++++|..........+++|++|+++++.++.. .....+.++++|++|++++|.- ..+ .+.++++|++|++
T Consensus 325 ~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~l~~L~~L~l 403 (570)
T 2z63_A 325 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDF 403 (570)
T ss_dssp SSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSE-EEEEEEEETCTTCCEEEC
T ss_pred cccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcc-ccccccccccCCCCEEEc
Confidence 34444444444432211124678899999988876321 1123467899999999999853 222 2667899999999
Q ss_pred ccCCCceE-----EEEecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEecccccc
Q 040388 88 YDNFRLQR-----LHINGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMK 160 (226)
Q Consensus 88 ~~c~~l~~-----~~~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~ 160 (226)
++|. +.. .....++|++|++.+. .......+..+++|++|++++|.+++..+...+..+++|+.|++++|.-
T Consensus 404 ~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l 482 (570)
T 2z63_A 404 QHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482 (570)
T ss_dssp TTSE-EESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred cCCc-cccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcc
Confidence 8874 111 1124678888885543 1112234567888999999988876432334457788999999988743
Q ss_pred ceee-c--c-CccccceeEEcc-e---E----EEeCCCcceEEEeecc
Q 040388 161 LRSA-K--I-SSRCLKKLFFKG-E---F----MLDTSNLSTFEYQGNL 196 (226)
Q Consensus 161 L~~l-~--i-~~~~L~~L~l~~-~---~----~i~~p~L~sl~~~g~~ 196 (226)
+.+ . + ..++|+.|++.+ . + .-..|+|+.+...++.
T Consensus 483 -~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 483 -EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp -CEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -ccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 333 2 2 235788888876 1 1 1245788888887763
No 45
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.18 E-value=8.4e-12 Score=103.18 Aligned_cols=189 Identities=16% Similarity=0.103 Sum_probs=115.9
Q ss_pred CCCccc-cccCCccEEEecccccccc----cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE--
Q 040388 2 NLPQVA-FNAESIVVLELQFCKLESL----RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL-- 74 (226)
Q Consensus 2 ~lP~~~-~~~~sL~~L~L~~c~~~~~----~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l-- 74 (226)
.+|..+ ..+++|++|++++|.+... .....+++|++|+++++.++. +..-+.++++|++|+++++. +..+
T Consensus 42 ~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--l~~~~~~l~~L~~L~l~~n~-l~~~~~ 118 (306)
T 2z66_A 42 SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSN-LKQMSE 118 (306)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE--EEEEEETCTTCCEEECTTSE-EESSTT
T ss_pred ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc--ChhhcCCCCCCCEEECCCCc-cccccc
Confidence 356654 4688999999999886521 223467899999998887631 11125678888888888763 1111
Q ss_pred --ecCCCCCcceEEeccCCCceEE----EEecceeeEEEeCCC--Cc-cccccccCcccCcEEEeeccccCchhHHHHHh
Q 040388 75 --ELPDLNNLKEFKAYDNFRLQRL----HINGVNVCSIDLASR--RT-LSDINVAPCKHLEKLKLSGLYIIDECPSNQVS 145 (226)
Q Consensus 75 --~i~~~~~Lk~L~l~~c~~l~~~----~~~~~~L~~L~~~~~--~~-~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~ 145 (226)
.+.++++|+.|++++|. +... ....++|++|++.+. .. .....+..+++|++|++++|.+++..+ ..+.
T Consensus 119 ~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~ 196 (306)
T 2z66_A 119 FSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFN 196 (306)
T ss_dssp TTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTT
T ss_pred chhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH-HHhc
Confidence 24456788888888774 2211 113467888875543 11 122345677788888888887766432 3346
Q ss_pred cCCCCcEEeccccccceeec---cC-ccccceeEEcc-eE-------EEeC-CCcceEEEeecc
Q 040388 146 KLQFLEYLHIDCCMKLRSAK---IS-SRCLKKLFFKG-EF-------MLDT-SNLSTFEYQGNL 196 (226)
Q Consensus 146 ~~~~Le~L~l~~C~~L~~l~---i~-~~~L~~L~l~~-~~-------~i~~-p~L~sl~~~g~~ 196 (226)
.+++|+.|+++++. ++.+. +. .++|+.|++.+ .+ .... ++|+.+...|+.
T Consensus 197 ~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 197 SLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 67888888888753 22221 22 25677777775 11 1223 377777777664
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.18 E-value=3.8e-11 Score=100.37 Aligned_cols=170 Identities=14% Similarity=0.129 Sum_probs=88.0
Q ss_pred cccccCCccEEEecccccccc--cCccCCCcccEEEecceecCH---H-----------------HHHHHHhcCCcccee
Q 040388 6 VAFNAESIVVLELQFCKLESL--RNNVTLSSLRKLCSSHVYEDD---Q-----------------VIEDFVAGCPLIEYM 63 (226)
Q Consensus 6 ~~~~~~sL~~L~L~~c~~~~~--~~~~~l~sLk~L~L~~~~~~~---~-----------------~l~~l~~~cp~Le~L 63 (226)
.+..+++|++|++++|.+... .....+++|++|+++++.++. . .....+.++++|+.|
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 150 (330)
T 1xku_A 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 150 (330)
T ss_dssp TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEE
T ss_pred hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEE
Confidence 344566777777777665422 223356666666666665421 0 011223445555555
Q ss_pred eeeccCC----ceEEecCCCCCcceEEeccCCCceEEEE-ecceeeEEEeCCC--CccccccccCcccCcEEEeeccccC
Q 040388 64 HVFDCGG----LKCLELPDLNNLKEFKAYDNFRLQRLHI-NGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYII 136 (226)
Q Consensus 64 ~l~~c~~----l~~l~i~~~~~Lk~L~l~~c~~l~~~~~-~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it 136 (226)
+++++.- ...-.+.++++|+.|++++|. +..+.. ..++|++|++.+. .......+..+++|++|++++|.++
T Consensus 151 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 229 (330)
T 1xku_A 151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229 (330)
T ss_dssp ECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc
Confidence 5554421 111112345666666666653 211111 1256777775442 1111224566777888888887776
Q ss_pred chhHHHHHhcCCCCcEEeccccccceeec--c-CccccceeEEcc
Q 040388 137 DECPSNQVSKLQFLEYLHIDCCMKLRSAK--I-SSRCLKKLFFKG 178 (226)
Q Consensus 137 ~~~~~~l~~~~~~Le~L~l~~C~~L~~l~--i-~~~~L~~L~l~~ 178 (226)
+... ..+..+++|+.|++++| .++.+. + ..++|++|++.+
T Consensus 230 ~~~~-~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~ 272 (330)
T 1xku_A 230 AVDN-GSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHN 272 (330)
T ss_dssp EECT-TTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCS
T ss_pred eeCh-hhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCC
Confidence 5432 23456778888888775 333332 1 125677777765
No 47
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.18 E-value=1.8e-11 Score=99.62 Aligned_cols=163 Identities=23% Similarity=0.186 Sum_probs=86.7
Q ss_pred CCccEEEeccccccccc--CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe---cCCCCCcceE
Q 040388 11 ESIVVLELQFCKLESLR--NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---LPDLNNLKEF 85 (226)
Q Consensus 11 ~sL~~L~L~~c~~~~~~--~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---i~~~~~Lk~L 85 (226)
++|++|++++|.+...+ ....+++|++|+++++.++. ....++.++++|++|+++++. +..+. +.++++|++|
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L 114 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAEL 114 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC-CCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe-eChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEE
Confidence 46777777777665321 23456777777777776531 111224566777777777653 22221 3446677777
Q ss_pred EeccCCCceEEE----EecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccc
Q 040388 86 KAYDNFRLQRLH----INGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCM 159 (226)
Q Consensus 86 ~l~~c~~l~~~~----~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~ 159 (226)
+++++. +..+. ...++|++|++.+. .......+..+++|++|++++|.++... ...+..+++|+.|+++++
T Consensus 115 ~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N- 191 (270)
T 2o6q_A 115 RLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP-EGAFDKLTELKTLKLDNN- 191 (270)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSS-
T ss_pred ECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC-hhHhccCCCcCEEECCCC-
Confidence 777663 22111 13466666664332 1111122456667777777777665432 122355667777777664
Q ss_pred cceeecc---C-ccccceeEEcc
Q 040388 160 KLRSAKI---S-SRCLKKLFFKG 178 (226)
Q Consensus 160 ~L~~l~i---~-~~~L~~L~l~~ 178 (226)
.++.+.. . .++|+.|++.+
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 192 QLKRVPEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCS
T ss_pred cCCcCCHHHhccccCCCEEEecC
Confidence 3333321 1 23556666554
No 48
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.17 E-value=2.4e-11 Score=94.45 Aligned_cols=125 Identities=14% Similarity=0.120 Sum_probs=73.2
Q ss_pred ccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCce--EEecCCCCCcceEE
Q 040388 9 NAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLK--CLELPDLNNLKEFK 86 (226)
Q Consensus 9 ~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~--~l~i~~~~~Lk~L~ 86 (226)
.+++|++|++++|.+...+....+++|++|+++++.+++- . -+.++|+|++|++++|.--. .-.++++++|+.|+
T Consensus 42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~--~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY--N-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCC--G-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcc--h-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 4567888888887776434455678888888888765221 1 35667888888887763211 12355667777777
Q ss_pred eccCCCceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccc-cCchhHHHHHhcCCCCcEEecccc
Q 040388 87 AYDNFRLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLY-IIDECPSNQVSKLQFLEYLHIDCC 158 (226)
Q Consensus 87 l~~c~~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~-it~~~~~~l~~~~~~Le~L~l~~C 158 (226)
+++|. +.. .....+..+++|++|++++|. +++. . .+..+++|+.|++++|
T Consensus 119 Ls~n~-i~~------------------~~~~~l~~l~~L~~L~L~~n~~i~~~--~-~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 119 ISHSA-HDD------------------SILTKINTLPKVNSIDLSYNGAITDI--M-PLKTLPELKSLNIQFD 169 (197)
T ss_dssp CCSSB-CBG------------------GGHHHHTTCSSCCEEECCSCTBCCCC--G-GGGGCSSCCEEECTTB
T ss_pred ecCCc-cCc------------------HhHHHHhhCCCCCEEEccCCCCcccc--H-hhcCCCCCCEEECCCC
Confidence 77763 111 001123455666666666665 4442 1 2355666666666664
No 49
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.17 E-value=1.7e-11 Score=99.94 Aligned_cols=189 Identities=15% Similarity=0.146 Sum_probs=118.3
Q ss_pred CCCccccccCCccEEEecccccccc-c-CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE---ec
Q 040388 2 NLPQVAFNAESIVVLELQFCKLESL-R-NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL---EL 76 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~c~~~~~-~-~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l---~i 76 (226)
.+|..+. ++|++|++++|.+... + ....+++|++|+++++.++.-. ...+.++++|++|++++|. +..+ .+
T Consensus 21 ~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 96 (276)
T 2z62_A 21 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNP-IQSLALGAF 96 (276)
T ss_dssp SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCC-CCEECTTTT
T ss_pred ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccC-HHHccCCcCCCEEECCCCc-cCccChhhh
Confidence 3566543 5799999999987632 2 3457899999999999773211 1235778999999999874 3333 25
Q ss_pred CCCCCcceEEeccCC--CceEE-EEecceeeEEEeCCC--Cc-cccccccCcccCcEEEeeccccCchhHHH--HHhcCC
Q 040388 77 PDLNNLKEFKAYDNF--RLQRL-HINGVNVCSIDLASR--RT-LSDINVAPCKHLEKLKLSGLYIIDECPSN--QVSKLQ 148 (226)
Q Consensus 77 ~~~~~Lk~L~l~~c~--~l~~~-~~~~~~L~~L~~~~~--~~-~~~~~~~~~~~L~~L~L~~~~it~~~~~~--l~~~~~ 148 (226)
.++++|++|++++|. .+... ....++|++|++.+. .. ..+..+..+++|++|++++|.+++..... ....++
T Consensus 97 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 176 (276)
T 2z62_A 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176 (276)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred cCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc
Confidence 678899999998885 22211 124678888885543 11 12335677889999999999876632211 123333
Q ss_pred CCc-EEeccccccceeec---cCccccceeEEcc-e---E----EEeCCCcceEEEeec
Q 040388 149 FLE-YLHIDCCMKLRSAK---ISSRCLKKLFFKG-E---F----MLDTSNLSTFEYQGN 195 (226)
Q Consensus 149 ~Le-~L~l~~C~~L~~l~---i~~~~L~~L~l~~-~---~----~i~~p~L~sl~~~g~ 195 (226)
.+. .|+++++ .++.+. ....+|+.|++.+ . + .-..++|+.+...++
T Consensus 177 ~l~l~L~ls~n-~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 177 LLNLSLDLSLN-PMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp TCCEEEECCSS-CCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred ccceeeecCCC-cccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 333 6777764 333332 1223577777765 1 1 123567777777766
No 50
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.17 E-value=1.9e-11 Score=100.16 Aligned_cols=170 Identities=18% Similarity=0.121 Sum_probs=116.8
Q ss_pred ccccccCCccEEEecccccccc--cCccCCCcccEEEeccee-cCHHHHHHHHhcCCccceeeeeccCCceE--EecCCC
Q 040388 5 QVAFNAESIVVLELQFCKLESL--RNNVTLSSLRKLCSSHVY-EDDQVIEDFVAGCPLIEYMHVFDCGGLKC--LELPDL 79 (226)
Q Consensus 5 ~~~~~~~sL~~L~L~~c~~~~~--~~~~~l~sLk~L~L~~~~-~~~~~l~~l~~~cp~Le~L~l~~c~~l~~--l~i~~~ 79 (226)
..+..+++|++|++++|.+... .....+++|++|+++++. ++.- ....+.++++|++|++++|.--.. -.+.++
T Consensus 50 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 128 (285)
T 1ozn_A 50 ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLGRLHTLHLDRCGLQELGPGLFRGL 128 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred HHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc-CHHHhcCCcCCCEEECCCCcCCEECHhHhhCC
Confidence 3456789999999999987632 234568999999999986 4221 122367789999999998742211 125568
Q ss_pred CCcceEEeccCCCceEEE----EecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEE
Q 040388 80 NNLKEFKAYDNFRLQRLH----INGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYL 153 (226)
Q Consensus 80 ~~Lk~L~l~~c~~l~~~~----~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L 153 (226)
++|++|++++|. +..+. ...++|++|++.+. .......+..+++|++|++++|.+++..+ ..+..+++|+.|
T Consensus 129 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L 206 (285)
T 1ozn_A 129 AALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTL 206 (285)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEE
T ss_pred cCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCH-hHccCcccccEe
Confidence 899999999884 32221 13678999986543 11122236678999999999998877543 334678999999
Q ss_pred eccccccceeec---c-CccccceeEEcc
Q 040388 154 HIDCCMKLRSAK---I-SSRCLKKLFFKG 178 (226)
Q Consensus 154 ~l~~C~~L~~l~---i-~~~~L~~L~l~~ 178 (226)
+++++ .++.+. + ..++|+.+++.+
T Consensus 207 ~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 207 YLFAN-NLSALPTEALAPLRALQYLRLND 234 (285)
T ss_dssp ECCSS-CCSCCCHHHHTTCTTCCEEECCS
T ss_pred eCCCC-cCCcCCHHHcccCcccCEEeccC
Confidence 99986 333333 2 236788899887
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.16 E-value=8e-12 Score=104.09 Aligned_cols=190 Identities=14% Similarity=0.071 Sum_probs=96.1
Q ss_pred CCCccccccCCccEEEecc-cccc-cc-cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE--ec
Q 040388 2 NLPQVAFNAESIVVLELQF-CKLE-SL-RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL--EL 76 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~-c~~~-~~-~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l--~i 76 (226)
.+|..+..+++|++|++++ +.+. .. .....+++|++|+|+++.++.. +...+.++++|++|++++|.--..+ .+
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 145 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSI 145 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCEEECCSSEEESCCCGGG
T ss_pred ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCCEEeCCCCccCCcCChHH
Confidence 3566777777777777775 5443 21 2234577777777777765321 1223556777777777766311111 23
Q ss_pred CCCCCcceEEeccCCCce-EEE---Eecc-eeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCC
Q 040388 77 PDLNNLKEFKAYDNFRLQ-RLH---INGV-NVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQF 149 (226)
Q Consensus 77 ~~~~~Lk~L~l~~c~~l~-~~~---~~~~-~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~ 149 (226)
.++++|++|++++|. +. .+. ...+ +|++|++.+. .......+..++ |++|++++|.+++... ..+..+++
T Consensus 146 ~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~-~~~~~l~~ 222 (313)
T 1ogq_A 146 SSLPNLVGITFDGNR-ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS-VLFGSDKN 222 (313)
T ss_dssp GGCTTCCEEECCSSC-CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCG-GGCCTTSC
T ss_pred hcCCCCCeEECcCCc-ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCC-HHHhcCCC
Confidence 456777777777664 22 111 0122 5666664332 111112233333 6666666666554322 33355666
Q ss_pred CcEEeccccccceeec-c-CccccceeEEcc-eE-------EEeCCCcceEEEeec
Q 040388 150 LEYLHIDCCMKLRSAK-I-SSRCLKKLFFKG-EF-------MLDTSNLSTFEYQGN 195 (226)
Q Consensus 150 Le~L~l~~C~~L~~l~-i-~~~~L~~L~l~~-~~-------~i~~p~L~sl~~~g~ 195 (226)
|+.|+++++.--..+. + ..++|++|++.+ .+ .-..|+|+.+...++
T Consensus 223 L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp CSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred CCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence 6666666642211111 1 124566666654 11 122355666655555
No 52
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.16 E-value=2.1e-11 Score=101.60 Aligned_cols=181 Identities=21% Similarity=0.169 Sum_probs=117.0
Q ss_pred ccccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEecCCCCCcce
Q 040388 5 QVAFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLELPDLNNLKE 84 (226)
Q Consensus 5 ~~~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~i~~~~~Lk~ 84 (226)
..+..+++|++|++++|.+........+++|++|+++++.+++ +..+|.|++|++++|. +..+....+++|++
T Consensus 52 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~------l~~~~~L~~L~l~~n~-l~~~~~~~~~~L~~ 124 (317)
T 3o53_A 52 ADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNN-ISRVSCSRGQGKKN 124 (317)
T ss_dssp HHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEE------EEECTTCCEEECCSSC-CSEEEECCCSSCEE
T ss_pred HHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccc------ccCCCCcCEEECCCCc-cCCcCccccCCCCE
Confidence 4566789999999999988633235679999999999998743 2245899999999873 44444455788888
Q ss_pred EEeccCC--CceEEE-EecceeeEEEeCCC--Ccc-ccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEecccc
Q 040388 85 FKAYDNF--RLQRLH-INGVNVCSIDLASR--RTL-SDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCC 158 (226)
Q Consensus 85 L~l~~c~--~l~~~~-~~~~~L~~L~~~~~--~~~-~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C 158 (226)
|++++|. .+.... ...++|++|++.+. ... .......+++|++|++++|.+++.. . ...+++|+.|+++++
T Consensus 125 L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~-~~~l~~L~~L~Ls~N 201 (317)
T 3o53_A 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--G-QVVFAKLKTLDLSSN 201 (317)
T ss_dssp EECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--C-CCCCTTCCEEECCSS
T ss_pred EECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc--c-ccccccCCEEECCCC
Confidence 8888875 221111 23577888885543 111 1112235678888888888876531 1 124778888888875
Q ss_pred ccceeec--c-CccccceeEEcc-e---E---EEeCCCcceEEEeecc
Q 040388 159 MKLRSAK--I-SSRCLKKLFFKG-E---F---MLDTSNLSTFEYQGNL 196 (226)
Q Consensus 159 ~~L~~l~--i-~~~~L~~L~l~~-~---~---~i~~p~L~sl~~~g~~ 196 (226)
.++.+. + ..++|+.|++.+ . + .-..|+|+.+...++.
T Consensus 202 -~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 202 -KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp -CCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred -cCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCC
Confidence 333332 1 225677777776 1 1 1235677777777663
No 53
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.15 E-value=4.7e-11 Score=108.12 Aligned_cols=142 Identities=18% Similarity=0.168 Sum_probs=70.5
Q ss_pred ccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE-ecCCCCCcceEEe
Q 040388 9 NAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL-ELPDLNNLKEFKA 87 (226)
Q Consensus 9 ~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l-~i~~~~~Lk~L~l 87 (226)
.+++|+.|++++|.+...+....+++|+.|+|+++.+++-. . +..+++|+.|++++|. +..+ .+..+++|+.|++
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~L 116 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LTNLKNLGWLFLDENK-IKDLSSLKDLKKLKSLSL 116 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCG--G-GGGCTTCCEEECCSSC-CCCCTTSTTCTTCCEEEC
T ss_pred cCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCCh--h-hccCCCCCEEECcCCC-CCCChhhccCCCCCEEEe
Confidence 34566666666666553333445666666666666652211 1 5566666666666652 1111 2344556666666
Q ss_pred ccCCCceEE--EEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEecccc
Q 040388 88 YDNFRLQRL--HINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCC 158 (226)
Q Consensus 88 ~~c~~l~~~--~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C 158 (226)
++|. +..+ ...+++|+.|++.+........+..+++|+.|++++|.+++..+ +..+++|+.|++++|
T Consensus 117 s~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 117 EHNG-ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKN 185 (605)
T ss_dssp TTSC-CCCCGGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSS
T ss_pred cCCC-CCCCccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCC
Confidence 6553 1111 01245555555333210001233455556666666555554322 345555565555554
No 54
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.15 E-value=7.5e-11 Score=98.19 Aligned_cols=173 Identities=11% Similarity=0.049 Sum_probs=121.3
Q ss_pred CCCccccccCCccEEEecccccc-cc-cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE--ecC
Q 040388 2 NLPQVAFNAESIVVLELQFCKLE-SL-RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL--ELP 77 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~c~~~-~~-~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l--~i~ 77 (226)
.+|..+..+++|++|++++|.+. .. .....+++|++|+|+++.+++. +...+.++++|++|++++|.--..+ .+.
T Consensus 92 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 170 (313)
T 1ogq_A 92 PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVGITFDGNRISGAIPDSYG 170 (313)
T ss_dssp CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEEECCSSCCEEECCGGGG
T ss_pred cCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc-CChHHhcCCCCCeEECcCCcccCcCCHHHh
Confidence 47888899999999999999986 33 3345799999999999987432 2233678999999999998532222 345
Q ss_pred CCC-CcceEEeccCCCceEE-E--EecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCc
Q 040388 78 DLN-NLKEFKAYDNFRLQRL-H--INGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLE 151 (226)
Q Consensus 78 ~~~-~Lk~L~l~~c~~l~~~-~--~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le 151 (226)
.++ +|+.|++++|. +... . +....|++|++.+. .......+..+++|++|++++|.++..... +..+++|+
T Consensus 171 ~l~~~L~~L~L~~N~-l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~l~~L~ 247 (313)
T 1ogq_A 171 SFSKLFTSMTISRNR-LTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLN 247 (313)
T ss_dssp CCCTTCCEEECCSSE-EEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG--CCCCTTCC
T ss_pred hhhhcCcEEECcCCe-eeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc--ccccCCCC
Confidence 566 89999999884 2211 1 11123888885543 112234567889999999999998765432 46789999
Q ss_pred EEeccccccceeec--cC-ccccceeEEcc
Q 040388 152 YLHIDCCMKLRSAK--IS-SRCLKKLFFKG 178 (226)
Q Consensus 152 ~L~l~~C~~L~~l~--i~-~~~L~~L~l~~ 178 (226)
.|+++++.--..+. +. .++|+.|++.+
T Consensus 248 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 277 (313)
T 1ogq_A 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277 (313)
T ss_dssp EEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred EEECcCCcccCcCChHHhcCcCCCEEECcC
Confidence 99999875432332 22 25789999887
No 55
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.15 E-value=4e-12 Score=105.78 Aligned_cols=82 Identities=12% Similarity=0.064 Sum_probs=50.0
Q ss_pred ccCCccEEEecccccc-cccC-c--cCCCcccEEEecceecCH--HHHHHHHhc-CCccceeeeeccCCceEE---ecCC
Q 040388 9 NAESIVVLELQFCKLE-SLRN-N--VTLSSLRKLCSSHVYEDD--QVIEDFVAG-CPLIEYMHVFDCGGLKCL---ELPD 78 (226)
Q Consensus 9 ~~~sL~~L~L~~c~~~-~~~~-~--~~l~sLk~L~L~~~~~~~--~~l~~l~~~-cp~Le~L~l~~c~~l~~l---~i~~ 78 (226)
.+++|++|++++|.+. ..+. . ..+++|++|+|+++.+++ ..+..+... .++|++|++++|.- ..+ .+.+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l-~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS-LNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSC-CCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCC-ccchHHHhcc
Confidence 5677888888888765 2222 1 467788888888877733 233332211 37788888877632 211 2445
Q ss_pred CCCcceEEeccCC
Q 040388 79 LNNLKEFKAYDNF 91 (226)
Q Consensus 79 ~~~Lk~L~l~~c~ 91 (226)
+++|++|++++|.
T Consensus 172 l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 172 FPALSTLDLSDNP 184 (312)
T ss_dssp CSSCCEEECCSCT
T ss_pred CCCCCEEECCCCC
Confidence 6777777777764
No 56
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.15 E-value=1.9e-10 Score=102.17 Aligned_cols=168 Identities=12% Similarity=0.060 Sum_probs=109.5
Q ss_pred CCcccc-ccCCccEEEeccccccc--c---cCccCCCcccEEEecceecCHHH-HHHHHhcCCccceeeeeccCCceEE-
Q 040388 3 LPQVAF-NAESIVVLELQFCKLES--L---RNNVTLSSLRKLCSSHVYEDDQV-IEDFVAGCPLIEYMHVFDCGGLKCL- 74 (226)
Q Consensus 3 lP~~~~-~~~sL~~L~L~~c~~~~--~---~~~~~l~sLk~L~L~~~~~~~~~-l~~l~~~cp~Le~L~l~~c~~l~~l- 74 (226)
+|..++ .+++|++|++++|.+.. + .....+++|++|+|++|.+++-. ....+..+++|++|++++| .+..+
T Consensus 325 ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp 403 (549)
T 2z81_A 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMP 403 (549)
T ss_dssp CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCC
T ss_pred CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC-CCccCC
Confidence 566665 57888888888887652 1 12346788899999888874322 2345778888999998887 33332
Q ss_pred -ecCCCCCcceEEeccCCCceEEEEe-cceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcE
Q 040388 75 -ELPDLNNLKEFKAYDNFRLQRLHIN-GVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEY 152 (226)
Q Consensus 75 -~i~~~~~Lk~L~l~~c~~l~~~~~~-~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~ 152 (226)
.+..+++|++|++++|. +..+... .++|++|++.+.... -....+++|++|++++|.++. +.. ...+++|+.
T Consensus 404 ~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~--~~~~~l~~L~~L~Ls~N~l~~--ip~-~~~l~~L~~ 477 (549)
T 2z81_A 404 DSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLD--SFSLFLPRLQELYISRNKLKT--LPD-ASLFPVLLV 477 (549)
T ss_dssp SCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCS--CCCCCCTTCCEEECCSSCCSS--CCC-GGGCTTCCE
T ss_pred hhhcccccccEEECCCCC-cccccchhcCCceEEECCCCChh--hhcccCChhcEEECCCCccCc--CCC-cccCccCCE
Confidence 23456788888888884 3322111 257888885543110 113578899999999998874 222 256899999
Q ss_pred Eeccccccceeecc----CccccceeEEcc
Q 040388 153 LHIDCCMKLRSAKI----SSRCLKKLFFKG 178 (226)
Q Consensus 153 L~l~~C~~L~~l~i----~~~~L~~L~l~~ 178 (226)
|+++++ .++.+.. ...+|+.+++.+
T Consensus 478 L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~ 506 (549)
T 2z81_A 478 MKISRN-QLKSVPDGIFDRLTSLQKIWLHT 506 (549)
T ss_dssp EECCSS-CCCCCCTTGGGGCTTCCEEECCS
T ss_pred EecCCC-ccCCcCHHHHhcCcccCEEEecC
Confidence 999986 4444321 124677777766
No 57
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.15 E-value=6.1e-11 Score=97.81 Aligned_cols=184 Identities=15% Similarity=0.076 Sum_probs=102.2
Q ss_pred ccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe-cCCCCCcceE
Q 040388 7 AFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE-LPDLNNLKEF 85 (226)
Q Consensus 7 ~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~-i~~~~~Lk~L 85 (226)
+.+++++++++++++.+...+... .++++.|+|+++.++.-. ...+.+++.|++|+++++. +..+. ...+++|+.|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccC-HHHhhcCCCCCEEECCCCc-cCcccCCCCCCcCCEE
Confidence 345677788888877766433222 367788888877763211 1235667778888877763 33222 2456777777
Q ss_pred EeccCC--CceEEEEecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccc
Q 040388 86 KAYDNF--RLQRLHINGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKL 161 (226)
Q Consensus 86 ~l~~c~--~l~~~~~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L 161 (226)
+++++. .+.......++|++|++.+. .......+..+++|++|++++|.++.. +...+..+++|+.|+++++ .+
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N-~l 160 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSLANN-NL 160 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTS-CC
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc-ChhhcccccCCCEEECCCC-cC
Confidence 777764 12111123466777774432 111122355667777777777776543 2233456677777777764 33
Q ss_pred eeecc---C-ccccceeEEcc-eE------EEeCCCcceEEEeec
Q 040388 162 RSAKI---S-SRCLKKLFFKG-EF------MLDTSNLSTFEYQGN 195 (226)
Q Consensus 162 ~~l~i---~-~~~L~~L~l~~-~~------~i~~p~L~sl~~~g~ 195 (226)
+.+.. . -.+|+.|++.+ .+ ..+.++|+.+...|+
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSC
T ss_pred CccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCC
Confidence 43332 1 24566666655 11 123445666666655
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.14 E-value=1.6e-11 Score=103.58 Aligned_cols=173 Identities=18% Similarity=0.120 Sum_probs=104.8
Q ss_pred CccccccCCccEEEeccccccccc-C-ccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE---ecCC
Q 040388 4 PQVAFNAESIVVLELQFCKLESLR-N-NVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL---ELPD 78 (226)
Q Consensus 4 P~~~~~~~sL~~L~L~~c~~~~~~-~-~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l---~i~~ 78 (226)
|..+..+++|++|++++|.+...+ . ...+++|++|+++++.++.-.....+.++++|++|++++|..+..+ .+.+
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 172 (353)
T 2z80_A 93 EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172 (353)
T ss_dssp TTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred HhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccC
Confidence 445667899999999999876432 2 3468999999999998742110024677899999999998666555 3556
Q ss_pred CCCcceEEeccCCCceEEE----EecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCc---------------
Q 040388 79 LNNLKEFKAYDNFRLQRLH----INGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIID--------------- 137 (226)
Q Consensus 79 ~~~Lk~L~l~~c~~l~~~~----~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~--------------- 137 (226)
+++|++|++++|. +..+. ...++|++|++.+. .......+..+++|++|++++|.+++
T Consensus 173 l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l 251 (353)
T 2z80_A 173 LTFLEELEIDASD-LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLI 251 (353)
T ss_dssp CCEEEEEEEEETT-CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCC
T ss_pred CCCCCEEECCCCC-cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchh
Confidence 7888888888874 22221 12456666664332 10011112235566666666655543
Q ss_pred ------------hh---HHHHHhcCCCCcEEeccccccceeecc----CccccceeEEcc
Q 040388 138 ------------EC---PSNQVSKLQFLEYLHIDCCMKLRSAKI----SSRCLKKLFFKG 178 (226)
Q Consensus 138 ------------~~---~~~l~~~~~~Le~L~l~~C~~L~~l~i----~~~~L~~L~l~~ 178 (226)
.. +...+..+++|+.|+++++ .++.+.. ..++|++|++.+
T Consensus 252 ~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~ 310 (353)
T 2z80_A 252 KKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHT 310 (353)
T ss_dssp CEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred hccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeC
Confidence 21 1233466777888888775 3344432 124566666665
No 59
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.14 E-value=2.2e-10 Score=107.36 Aligned_cols=39 Identities=21% Similarity=0.137 Sum_probs=20.3
Q ss_pred ccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEecccc
Q 040388 119 VAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCC 158 (226)
Q Consensus 119 ~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C 158 (226)
+..+++|+.|++++|.++.... ..+..+++|+.|+++++
T Consensus 286 ~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~N 324 (844)
T 3j0a_A 286 FETLKDLKVLNLAYNKINKIAD-EAFYGLDNLQVLNLSYN 324 (844)
T ss_dssp SSSCCCCCEEEEESCCCCEECT-TTTTTCSSCCEEEEESC
T ss_pred hhcCCCCCEEECCCCcCCCCCh-HHhcCCCCCCEEECCCC
Confidence 3445556666666665544322 22345566666666554
No 60
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.13 E-value=4.1e-10 Score=101.61 Aligned_cols=65 Identities=14% Similarity=0.152 Sum_probs=41.3
Q ss_pred CCcccc-ccCCccEEEecccccccc-c-CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeecc
Q 040388 3 LPQVAF-NAESIVVLELQFCKLESL-R-NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDC 68 (226)
Q Consensus 3 lP~~~~-~~~sL~~L~L~~c~~~~~-~-~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 68 (226)
+|..++ .+++|++|+|++|.+... + ....+++|++|+|+++.++.- ....+.++++|+.|++++|
T Consensus 66 lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n 133 (597)
T 3oja_B 66 LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERN 133 (597)
T ss_dssp ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred cCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCC-CHHHHcCCCCCCEEEeeCC
Confidence 455544 467788888888776532 2 334677888888887776321 1223566778888887776
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.13 E-value=6.2e-11 Score=104.64 Aligned_cols=182 Identities=21% Similarity=0.176 Sum_probs=120.7
Q ss_pred CccccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEecCCCCCcc
Q 040388 4 PQVAFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLELPDLNNLK 83 (226)
Q Consensus 4 P~~~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~i~~~~~Lk 83 (226)
|..+..+++|++|+|++|.+........+++|++|+|++|.+++ +...|.|+.|++++|. +..+....+++|+
T Consensus 51 ~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~------l~~~~~L~~L~L~~N~-l~~~~~~~l~~L~ 123 (487)
T 3oja_A 51 AADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNN-ISRVSCSRGQGKK 123 (487)
T ss_dssp GGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE------EEECTTCCEEECCSSC-CCCEEECCCSSCE
T ss_pred HHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC------CCCCCCcCEEECcCCc-CCCCCccccCCCC
Confidence 45667899999999999998632235679999999999998743 2244899999999874 3333334568899
Q ss_pred eEEeccCC--CceEE-EEecceeeEEEeCCC--Cccccccc-cCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccc
Q 040388 84 EFKAYDNF--RLQRL-HINGVNVCSIDLASR--RTLSDINV-APCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDC 157 (226)
Q Consensus 84 ~L~l~~c~--~l~~~-~~~~~~L~~L~~~~~--~~~~~~~~-~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~ 157 (226)
.|++++|. .+... ....++|++|++.+. .......+ ..+++|++|++++|.+++.. . ...+++|+.|++++
T Consensus 124 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--~-~~~l~~L~~L~Ls~ 200 (487)
T 3oja_A 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--G-QVVFAKLKTLDLSS 200 (487)
T ss_dssp EEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--C-CCCCTTCCEEECCS
T ss_pred EEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc--c-cccCCCCCEEECCC
Confidence 99998885 22111 124678888885543 11111222 36788899999988887642 1 23578888888888
Q ss_pred cccceeecc---CccccceeEEcc-eE------EEeCCCcceEEEeecc
Q 040388 158 CMKLRSAKI---SSRCLKKLFFKG-EF------MLDTSNLSTFEYQGNL 196 (226)
Q Consensus 158 C~~L~~l~i---~~~~L~~L~l~~-~~------~i~~p~L~sl~~~g~~ 196 (226)
+ .++.+.. ..++|+.|++.+ .+ .-..|+|+.+...|+.
T Consensus 201 N-~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 201 N-KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp S-CCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred C-CCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCC
Confidence 5 3333321 235688888876 11 1234778888777764
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.12 E-value=3.3e-10 Score=102.84 Aligned_cols=58 Identities=22% Similarity=0.146 Sum_probs=40.3
Q ss_pred CCCccccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeecc
Q 040388 2 NLPQVAFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDC 68 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 68 (226)
.+|..++ ++|++|++++|.+...+. .+++|++|+|++|.++. +-...++|++|++++|
T Consensus 54 ~lp~~l~--~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~-----lp~~l~~L~~L~Ls~N 111 (622)
T 3g06_A 54 TLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTS-----LPVLPPGLLELSIFSN 111 (622)
T ss_dssp CCCSCCC--TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSC-----CCCCCTTCCEEEECSC
T ss_pred ccChhhC--CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCc-----CCCCCCCCCEEECcCC
Confidence 3566655 688888888887764333 57888888888887631 1226678888888776
No 63
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.09 E-value=8e-11 Score=107.16 Aligned_cols=66 Identities=11% Similarity=-0.028 Sum_probs=48.0
Q ss_pred CCcccc--ccCCccEEEecccccc-cc-cCccCCCcccEEEeccee-cCHHHHHHHH------hcCCccceeeeecc
Q 040388 3 LPQVAF--NAESIVVLELQFCKLE-SL-RNNVTLSSLRKLCSSHVY-EDDQVIEDFV------AGCPLIEYMHVFDC 68 (226)
Q Consensus 3 lP~~~~--~~~sL~~L~L~~c~~~-~~-~~~~~l~sLk~L~L~~~~-~~~~~l~~l~------~~cp~Le~L~l~~c 68 (226)
+|..+. .+++|++|++++|.+. .. .....+++|++|+++++. +++..+..-+ .++++|++|++++|
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n 315 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC
Confidence 899999 9999999999999864 22 334579999999999998 6662222222 23477777777665
No 64
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.09 E-value=9e-11 Score=106.80 Aligned_cols=205 Identities=11% Similarity=0.012 Sum_probs=135.2
Q ss_pred CCCccccccCCccEEEecccc-ccc--ccC-cc------CCCcccEEEecceecCHHHHHH--HHhcCCccceeeeeccC
Q 040388 2 NLPQVAFNAESIVVLELQFCK-LES--LRN-NV------TLSSLRKLCSSHVYEDDQVIED--FVAGCPLIEYMHVFDCG 69 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~c~-~~~--~~~-~~------~l~sLk~L~L~~~~~~~~~l~~--l~~~cp~Le~L~l~~c~ 69 (226)
.+|..+..+++|++|++++|. +.. .+. .. .+++|++|+++++.++ .+.. .+.++++|++|++++|.
T Consensus 264 ~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~--~ip~~~~l~~l~~L~~L~L~~N~ 341 (636)
T 4eco_A 264 KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK--TFPVETSLQKMKKLGMLECLYNQ 341 (636)
T ss_dssp SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS--SCCCHHHHTTCTTCCEEECCSCC
T ss_pred cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC--ccCchhhhccCCCCCEEeCcCCc
Confidence 478899999999999999998 542 222 12 3499999999999886 3443 57889999999999885
Q ss_pred CceEE-ecCCCCCcceEEeccCCCceEE---EEecce-eeEEEeCCC-CccccccccC--cccCcEEEeeccccCchhHH
Q 040388 70 GLKCL-ELPDLNNLKEFKAYDNFRLQRL---HINGVN-VCSIDLASR-RTLSDINVAP--CKHLEKLKLSGLYIIDECPS 141 (226)
Q Consensus 70 ~l~~l-~i~~~~~Lk~L~l~~c~~l~~~---~~~~~~-L~~L~~~~~-~~~~~~~~~~--~~~L~~L~L~~~~it~~~~~ 141 (226)
--..+ .+..+++|+.|++++|. +..+ ....++ |++|++.+. ....+..+.. +++|++|++++|.++...+.
T Consensus 342 l~g~ip~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 420 (636)
T 4eco_A 342 LEGKLPAFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420 (636)
T ss_dssp CEEECCCCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTC
T ss_pred CccchhhhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchh
Confidence 32133 44556899999999884 3322 124567 999995543 1111222333 44899999999998775432
Q ss_pred HHHh-------cCCCCcEEeccccccceeecc----CccccceeEEcc-eEE------E-e-------CCCcceEEEeec
Q 040388 142 NQVS-------KLQFLEYLHIDCCMKLRSAKI----SSRCLKKLFFKG-EFM------L-D-------TSNLSTFEYQGN 195 (226)
Q Consensus 142 ~l~~-------~~~~Le~L~l~~C~~L~~l~i----~~~~L~~L~l~~-~~~------i-~-------~p~L~sl~~~g~ 195 (226)
.+ . .+++|+.|+++++. ++.+.. ..++|+.|++.+ .+. . . +++|+.+...++
T Consensus 421 ~l-~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N 498 (636)
T 4eco_A 421 NF-DPLDPTPFKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN 498 (636)
T ss_dssp SS-CTTCSSCCCCCCEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSS
T ss_pred hh-cccccccccCCCCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCC
Confidence 22 3 56799999999863 333332 135788888876 111 1 1 128889888877
Q ss_pred cee---ecc---ccccceeeeE
Q 040388 196 LVS---FSS---NALALSQIIL 211 (226)
Q Consensus 196 ~~~---~~~---~~~~l~~~~~ 211 (226)
.+. ... +.+.|+.+.+
T Consensus 499 ~l~~lp~~~~~~~l~~L~~L~L 520 (636)
T 4eco_A 499 KLTKLSDDFRATTLPYLVGIDL 520 (636)
T ss_dssp CCCBCCGGGSTTTCTTCCEEEC
T ss_pred cCCccChhhhhccCCCcCEEEC
Confidence 532 211 3456666655
No 65
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.08 E-value=5.9e-11 Score=92.17 Aligned_cols=131 Identities=13% Similarity=0.042 Sum_probs=96.6
Q ss_pred CCccccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCce--EEecCCCC
Q 040388 3 LPQVAFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLK--CLELPDLN 80 (226)
Q Consensus 3 lP~~~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~--~l~i~~~~ 80 (226)
+| .+..+++|++|++++|.+...+....+++|++|+++++.+++..... +.++|+|+.|++++|.--. .-.+.+++
T Consensus 59 l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~ 136 (197)
T 4ezg_A 59 LT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLDISHSAHDDSILTKINTLP 136 (197)
T ss_dssp CT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTCCEEECCSSBCBGGGHHHHTTCS
T ss_pred hH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChh-hcCCCCCCEEEecCCccCcHhHHHHhhCC
Confidence 45 57788999999999997764445567999999999999885533333 6789999999999984321 11356789
Q ss_pred CcceEEeccCCCceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEecccc
Q 040388 81 NLKEFKAYDNFRLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCC 158 (226)
Q Consensus 81 ~Lk~L~l~~c~~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C 158 (226)
+|++|++++|..+..+ . .+..+++|++|++++|.+++.. .+..+++|+.|++.+.
T Consensus 137 ~L~~L~L~~n~~i~~~-------------------~-~l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 137 KVNSIDLSYNGAITDI-------------------M-PLKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp SCCEEECCSCTBCCCC-------------------G-GGGGCSSCCEEECTTBCCCCCT---TGGGCSSCCEEEECBC
T ss_pred CCCEEEccCCCCcccc-------------------H-hhcCCCCCCEEECCCCCCcChH---HhccCCCCCEEEeeCc
Confidence 9999999988533321 1 3556788899999988887632 3467888888888774
No 66
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.08 E-value=1.4e-10 Score=98.99 Aligned_cols=116 Identities=16% Similarity=0.162 Sum_probs=74.4
Q ss_pred CCcceEEeccCCC----ceE---EEEecceeeEEEeCCCC-c------cccccccCcccCcEEEeeccccCchh---HHH
Q 040388 80 NNLKEFKAYDNFR----LQR---LHINGVNVCSIDLASRR-T------LSDINVAPCKHLEKLKLSGLYIIDEC---PSN 142 (226)
Q Consensus 80 ~~Lk~L~l~~c~~----l~~---~~~~~~~L~~L~~~~~~-~------~~~~~~~~~~~L~~L~L~~~~it~~~---~~~ 142 (226)
++|++|++++|.- +.. .....++|++|++.+.. . .....+..+++|++|++++|.+++.. +..
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 6788888887741 111 11145688888854431 1 11114567889999999999987533 334
Q ss_pred HHhcCCCCcEEeccccccceee---------c-cCccccceeEEcc-e--------E---E-EeCCCcceEEEeecc
Q 040388 143 QVSKLQFLEYLHIDCCMKLRSA---------K-ISSRCLKKLFFKG-E--------F---M-LDTSNLSTFEYQGNL 196 (226)
Q Consensus 143 l~~~~~~Le~L~l~~C~~L~~l---------~-i~~~~L~~L~l~~-~--------~---~-i~~p~L~sl~~~g~~ 196 (226)
.+..+++|+.|++++|.- ... . -..++|+.|++.+ . + . -..|+|+.+...++.
T Consensus 239 ~l~~~~~L~~L~L~~n~i-~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLL-SARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HGGGCTTCCEEECTTCCC-CHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHccCCCcCEEECCCCCC-chhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 567889999999998742 211 1 1146799999876 1 1 1 235999999888773
No 67
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.08 E-value=1.8e-10 Score=94.98 Aligned_cols=144 Identities=17% Similarity=0.137 Sum_probs=107.7
Q ss_pred ccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE-ecCCCCCcceE
Q 040388 7 AFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL-ELPDLNNLKEF 85 (226)
Q Consensus 7 ~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l-~i~~~~~Lk~L 85 (226)
+..+++|++|++++|.+...+....+++|+.|+++++.+++ +.. +..+++|++|++++|. +..+ .+..+++|+.|
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~~n~-i~~~~~l~~l~~L~~L 139 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSLEHNG-ISDINGLVHLPQLESL 139 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEECTTSC-CCCCGGGGGCTTCCEE
T ss_pred HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC--Chh-hccCCCCCEEECCCCc-CCCChhhcCCCCCCEE
Confidence 56789999999999998744335679999999999998843 222 7889999999999884 3222 35568999999
Q ss_pred EeccCCCceEEE--EecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEecccc
Q 040388 86 KAYDNFRLQRLH--INGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCC 158 (226)
Q Consensus 86 ~l~~c~~l~~~~--~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C 158 (226)
++++|. +..+. ...++|++|++.+........+..+++|++|++++|.+++. .. +..+++|+.|++.++
T Consensus 140 ~l~~n~-l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l--~~-l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 140 YLGNNK-ITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL--RA-LAGLKNLDVLELFSQ 210 (291)
T ss_dssp ECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBC--GG-GTTCTTCSEEEEEEE
T ss_pred EccCCc-CCcchhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCCC--hh-hccCCCCCEEECcCC
Confidence 999985 33221 14688999996543111111277889999999999999874 23 578999999999986
No 68
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.08 E-value=4.7e-11 Score=99.90 Aligned_cols=186 Identities=16% Similarity=0.093 Sum_probs=105.6
Q ss_pred CccccccCCccEEEecccccccc--cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE---ecCC
Q 040388 4 PQVAFNAESIVVLELQFCKLESL--RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL---ELPD 78 (226)
Q Consensus 4 P~~~~~~~sL~~L~L~~c~~~~~--~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l---~i~~ 78 (226)
|..+..+++|++|++++|.+... .....+++|++|+|+++.++. +.. ...++|++|+++++.- ..+ .+.+
T Consensus 71 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~--~~~~~L~~L~l~~n~i-~~~~~~~~~~ 145 (332)
T 2ft3_A 71 KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE--IPP--NLPSSLVELRIHDNRI-RKVPKGVFSG 145 (332)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS--CCS--SCCTTCCEEECCSSCC-CCCCSGGGSS
T ss_pred HhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc--cCc--cccccCCEEECCCCcc-CccCHhHhCC
Confidence 34566778888888888876532 233467888888888877631 110 1126777777776631 111 1344
Q ss_pred CCCcceEEeccCCC------------------------ceEEEE-ecceeeEEEeCCC--CccccccccCcccCcEEEee
Q 040388 79 LNNLKEFKAYDNFR------------------------LQRLHI-NGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLS 131 (226)
Q Consensus 79 ~~~Lk~L~l~~c~~------------------------l~~~~~-~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~ 131 (226)
+++|+.|+++++.- +..+.. ..++|++|++.+. .......+..+++|++|+++
T Consensus 146 l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~ 225 (332)
T 2ft3_A 146 LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLG 225 (332)
T ss_dssp CSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCC
T ss_pred CccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence 56666666655531 111100 0145666664332 11112245677888888888
Q ss_pred ccccCchhHHHHHhcCCCCcEEeccccccceeecc---CccccceeEEcc-eE-------------EEeCCCcceEEEee
Q 040388 132 GLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAKI---SSRCLKKLFFKG-EF-------------MLDTSNLSTFEYQG 194 (226)
Q Consensus 132 ~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~i---~~~~L~~L~l~~-~~-------------~i~~p~L~sl~~~g 194 (226)
+|.+++... ..+..+++|+.|+++++ .++.+.. ..++|+.|++.+ .+ ....++++.+.+.|
T Consensus 226 ~N~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~ 303 (332)
T 2ft3_A 226 HNQIRMIEN-GSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN 303 (332)
T ss_dssp SSCCCCCCT-TGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCS
T ss_pred CCcCCcCCh-hHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeec
Confidence 888766432 23467888888888875 3444422 125678888775 11 01145677777777
Q ss_pred cc
Q 040388 195 NL 196 (226)
Q Consensus 195 ~~ 196 (226)
+.
T Consensus 304 N~ 305 (332)
T 2ft3_A 304 NP 305 (332)
T ss_dssp SS
T ss_pred Cc
Confidence 63
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.07 E-value=2.6e-11 Score=98.82 Aligned_cols=180 Identities=19% Similarity=0.218 Sum_probs=121.1
Q ss_pred cccccCCccEEEecccccccc-c-CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCC--ceEEecCCCCC
Q 040388 6 VAFNAESIVVLELQFCKLESL-R-NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGG--LKCLELPDLNN 81 (226)
Q Consensus 6 ~~~~~~sL~~L~L~~c~~~~~-~-~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~--l~~l~i~~~~~ 81 (226)
.+..+++|++|++++|.+... + ....+++|++|+|+++.++... ...+.++++|++|++++|.- +....+.++++
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 125 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125 (276)
T ss_dssp TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC-hhhhcCCccccEEECCCCCccccCchhcccCCC
Confidence 566789999999999987632 2 3457899999999999874321 12367889999999998742 22224677899
Q ss_pred cceEEeccCCCceEE-----EEecceeeEEEeCCC--CccccccccCcccCc----EEEeeccccCchhHHHHHhcCCCC
Q 040388 82 LKEFKAYDNFRLQRL-----HINGVNVCSIDLASR--RTLSDINVAPCKHLE----KLKLSGLYIIDECPSNQVSKLQFL 150 (226)
Q Consensus 82 Lk~L~l~~c~~l~~~-----~~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~----~L~L~~~~it~~~~~~l~~~~~~L 150 (226)
|++|++++|. +..+ ....++|++|++.+. .......+..+++|+ +|++++|.++.... .. ....+|
T Consensus 126 L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~-~~-~~~~~L 202 (276)
T 2z62_A 126 LKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP-GA-FKEIRL 202 (276)
T ss_dssp CCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECT-TS-SCSCCE
T ss_pred CCEEECcCCc-cceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCc-cc-cCCCcc
Confidence 9999999885 2221 124588999996543 111122344455565 88999998876422 22 234589
Q ss_pred cEEeccccccceeecc---C-ccccceeEEcc-eEEEeCCCcceE
Q 040388 151 EYLHIDCCMKLRSAKI---S-SRCLKKLFFKG-EFMLDTSNLSTF 190 (226)
Q Consensus 151 e~L~l~~C~~L~~l~i---~-~~~L~~L~l~~-~~~i~~p~L~sl 190 (226)
+.|+++++. ++.+.. . .++|+.+++.+ .+.-++|.++.+
T Consensus 203 ~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l 246 (276)
T 2z62_A 203 KELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 246 (276)
T ss_dssp EEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHH
T ss_pred cEEECCCCc-eeecCHhHhcccccccEEEccCCcccccCCchHHH
Confidence 999999864 454432 2 35788999887 455677777643
No 70
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.07 E-value=8.8e-11 Score=95.52 Aligned_cols=142 Identities=18% Similarity=0.177 Sum_probs=85.3
Q ss_pred ccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE-ecCCCCCcceE
Q 040388 7 AFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL-ELPDLNNLKEF 85 (226)
Q Consensus 7 ~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l-~i~~~~~Lk~L 85 (226)
+..+++|++|++++|.+...+....+++|+.|+|+++.+++-. . +.++++|++|++++|. +..+ .+.. ++|+.|
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~--~-l~~l~~L~~L~L~~N~-l~~l~~~~~-~~L~~L 111 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLS--P-LKDLTKLEELSVNRNR-LKNLNGIPS-ACLSRL 111 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCSSCCEEECCSSC-CSCCTTCCC-SSCCEE
T ss_pred hhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCCh--h-hccCCCCCEEECCCCc-cCCcCcccc-CcccEE
Confidence 4456788888888887764444456788888888888773321 1 6778888888888763 2222 1223 677777
Q ss_pred EeccCCCceEEE--EecceeeEEEeCCC-CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEecccc
Q 040388 86 KAYDNFRLQRLH--INGVNVCSIDLASR-RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCC 158 (226)
Q Consensus 86 ~l~~c~~l~~~~--~~~~~L~~L~~~~~-~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C 158 (226)
++++|. +..+. ...++|++|++.+. .... ..+..+++|++|++++|.+++. ..+..+++|+.|++.++
T Consensus 112 ~L~~N~-l~~~~~l~~l~~L~~L~Ls~N~i~~~-~~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 112 FLDNNE-LRDTDSLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp ECCSSC-CSBSGGGTTCTTCCEEECTTSCCCBC-GGGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEE
T ss_pred EccCCc-cCCChhhcCcccccEEECCCCcCCCC-hHHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCC
Confidence 777774 22211 13456666664432 1111 1345566777777777766653 23456667777776664
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.07 E-value=1e-10 Score=95.14 Aligned_cols=150 Identities=17% Similarity=0.108 Sum_probs=107.5
Q ss_pred cccccCCccEEEeccccccccc-C-ccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE---ecCCCC
Q 040388 6 VAFNAESIVVLELQFCKLESLR-N-NVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL---ELPDLN 80 (226)
Q Consensus 6 ~~~~~~sL~~L~L~~c~~~~~~-~-~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l---~i~~~~ 80 (226)
.+..+++|++|++++|.+...+ . ...+++|++|+++++.++.- ....+.++++|++|+++++. +..+ .+.+++
T Consensus 56 ~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~ 133 (270)
T 2o6q_A 56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL-PIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLT 133 (270)
T ss_dssp SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCC-CTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcC-CHhHcccccCCCEEECCCCc-cCeeCHHHhCcCc
Confidence 4567899999999999886432 2 34689999999999987321 12346788999999999874 2222 245689
Q ss_pred CcceEEeccCCCceEEE----EecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEe
Q 040388 81 NLKEFKAYDNFRLQRLH----INGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLH 154 (226)
Q Consensus 81 ~Lk~L~l~~c~~l~~~~----~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~ 154 (226)
+|++|++++|. +..+. ...++|++|++.+. .......+..+++|++|++++|.++.. ....+..+++|+.|+
T Consensus 134 ~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~ 211 (270)
T 2o6q_A 134 KLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV-PEGAFDSLEKLKMLQ 211 (270)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC-CHHHhccccCCCEEE
Confidence 99999999984 33222 13688999996543 222222466789999999999998753 234457789999999
Q ss_pred ccccc
Q 040388 155 IDCCM 159 (226)
Q Consensus 155 l~~C~ 159 (226)
+.+++
T Consensus 212 l~~N~ 216 (270)
T 2o6q_A 212 LQENP 216 (270)
T ss_dssp CCSSC
T ss_pred ecCCC
Confidence 98753
No 72
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.06 E-value=1.3e-10 Score=105.26 Aligned_cols=146 Identities=16% Similarity=0.097 Sum_probs=109.1
Q ss_pred cccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE-ecCCCCCcce
Q 040388 6 VAFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL-ELPDLNNLKE 84 (226)
Q Consensus 6 ~~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l-~i~~~~~Lk~ 84 (226)
.+..+++|++|+|++|.+...+....+++|+.|+|++|.+.+ +. -+..+++|+.|++++|.- ..+ .+.++++|+.
T Consensus 60 ~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~L~Ls~N~l-~~l~~l~~l~~L~~ 135 (605)
T 1m9s_A 60 GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD--LS-SLKDLKKLKSLSLEHNGI-SDINGLVHLPQLES 135 (605)
T ss_dssp TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC--CT-TSTTCTTCCEEECTTSCC-CCCGGGGGCTTCSE
T ss_pred HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC--Ch-hhccCCCCCEEEecCCCC-CCCccccCCCccCE
Confidence 467789999999999998644335679999999999998843 12 367899999999998842 222 3566899999
Q ss_pred EEeccCCCceEEE--EecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccc
Q 040388 85 FKAYDNFRLQRLH--INGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCM 159 (226)
Q Consensus 85 L~l~~c~~l~~~~--~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~ 159 (226)
|++++|. +..+. ..+++|+.|++.+........+..+++|++|++++|.+++. . .+..+++|+.|++.+|+
T Consensus 136 L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l--~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 136 LYLGNNK-ITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL--R-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp EECCSSC-CCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBC--G-GGTTCTTCSEEECCSEE
T ss_pred EECCCCc-cCCchhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCC--h-HHccCCCCCEEEccCCc
Confidence 9999985 33221 14688999996553111111277899999999999999874 2 35789999999999863
No 73
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.06 E-value=9e-11 Score=94.49 Aligned_cols=78 Identities=17% Similarity=0.076 Sum_probs=33.8
Q ss_pred CCccEEEecccccccc-c-CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE---ecCCCCCcceE
Q 040388 11 ESIVVLELQFCKLESL-R-NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL---ELPDLNNLKEF 85 (226)
Q Consensus 11 ~sL~~L~L~~c~~~~~-~-~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l---~i~~~~~Lk~L 85 (226)
+++++|++++|.+... + ....+++|++|+|+++.+++. ....+.++++|++|+++++. +..+ .+.++++|++|
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 112 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKL 112 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCc-ccccChhHhcccCCCCEE
Confidence 3455555555554321 1 123455555555555544211 11123444555555555542 1111 12334555555
Q ss_pred EeccC
Q 040388 86 KAYDN 90 (226)
Q Consensus 86 ~l~~c 90 (226)
++++|
T Consensus 113 ~L~~N 117 (251)
T 3m19_A 113 YLGGN 117 (251)
T ss_dssp ECCSS
T ss_pred EcCCC
Confidence 55554
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.05 E-value=4.4e-11 Score=99.45 Aligned_cols=204 Identities=14% Similarity=0.064 Sum_probs=122.2
Q ss_pred CCccccccCCccEEEeccccccc--ccCcc--------CCCcccEEEecceecCHHHHHHH-HhcCCccceeeeeccCCc
Q 040388 3 LPQVAFNAESIVVLELQFCKLES--LRNNV--------TLSSLRKLCSSHVYEDDQVIEDF-VAGCPLIEYMHVFDCGGL 71 (226)
Q Consensus 3 lP~~~~~~~sL~~L~L~~c~~~~--~~~~~--------~l~sLk~L~L~~~~~~~~~l~~l-~~~cp~Le~L~l~~c~~l 71 (226)
+|..++.. |++|+++++.+.. .+... ++++|++|+|+++.+++.....+ ..++++|++|+++++.-
T Consensus 57 ~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l- 133 (312)
T 1wwl_A 57 DLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW- 133 (312)
T ss_dssp CCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC-
T ss_pred cHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC-
Confidence 35555544 7778888777632 11111 47888999998888743322222 36788889998888732
Q ss_pred eEE--ecCC-----CCCcceEEeccCCCceEE----EEecceeeEEEeCCCC--c----cccccccCcccCcEEEeeccc
Q 040388 72 KCL--ELPD-----LNNLKEFKAYDNFRLQRL----HINGVNVCSIDLASRR--T----LSDINVAPCKHLEKLKLSGLY 134 (226)
Q Consensus 72 ~~l--~i~~-----~~~Lk~L~l~~c~~l~~~----~~~~~~L~~L~~~~~~--~----~~~~~~~~~~~L~~L~L~~~~ 134 (226)
..+ .+.+ +++|++|++++|. +..+ ....++|++|++.+.. . +....+..+++|++|++++|.
T Consensus 134 ~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~ 212 (312)
T 1wwl_A 134 ATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG 212 (312)
T ss_dssp SSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC
T ss_pred cchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc
Confidence 111 0111 2788999998885 2221 1246788888855431 1 112223678899999999998
Q ss_pred cCc--hhHHHHHhcCCCCcEEeccccccceeeccC----ccccceeEEcc-eE-----EEeCCCcceEEEeecce---ee
Q 040388 135 IID--ECPSNQVSKLQFLEYLHIDCCMKLRSAKIS----SRCLKKLFFKG-EF-----MLDTSNLSTFEYQGNLV---SF 199 (226)
Q Consensus 135 it~--~~~~~l~~~~~~Le~L~l~~C~~L~~l~i~----~~~L~~L~l~~-~~-----~i~~p~L~sl~~~g~~~---~~ 199 (226)
++. .....++..+++|+.|+++++.--...... ..+|+.|++++ .+ .+. ++|+.+...++.+ |.
T Consensus 213 l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~~L~~L~Ls~N~l~~~p~ 291 (312)
T 1wwl_A 213 METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-AKLSVLDLSYNRLDRNPS 291 (312)
T ss_dssp CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-SEEEEEECCSSCCCSCCC
T ss_pred CcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc-CCceEEECCCCCCCCChh
Confidence 874 333456678899999999886322211111 25788888876 11 111 6788887777642 22
Q ss_pred ccccccceeeeE
Q 040388 200 SSNALALSQIIL 211 (226)
Q Consensus 200 ~~~~~~l~~~~~ 211 (226)
..+.+.|+.+.+
T Consensus 292 ~~~l~~L~~L~L 303 (312)
T 1wwl_A 292 PDELPQVGNLSL 303 (312)
T ss_dssp TTTSCEEEEEEC
T ss_pred HhhCCCCCEEec
Confidence 114455555444
No 75
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.04 E-value=8.6e-10 Score=100.16 Aligned_cols=53 Identities=17% Similarity=0.002 Sum_probs=34.5
Q ss_pred ccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeecc
Q 040388 9 NAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDC 68 (226)
Q Consensus 9 ~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 68 (226)
.+++|++|+|++|.+...+. .+++|++|+|++|.++. +....++|+.|++++|
T Consensus 79 ~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~-----l~~~l~~L~~L~L~~N 131 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTH-----LPALPSGLCKLWIFGN 131 (622)
T ss_dssp CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCC-----CCCCCTTCCEEECCSS
T ss_pred cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCC-----CCCCCCCcCEEECCCC
Confidence 45788888888888764333 67888888888876522 1114456666666655
No 76
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.04 E-value=6.1e-10 Score=98.43 Aligned_cols=163 Identities=15% Similarity=0.103 Sum_probs=86.9
Q ss_pred CCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCce--EE--ecCCCCCcceEE
Q 040388 11 ESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLK--CL--ELPDLNNLKEFK 86 (226)
Q Consensus 11 ~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~--~l--~i~~~~~Lk~L~ 86 (226)
.+|++|++++|.+........+++|++|+++++.+++... ..+.++++|++|++++|.--. .+ .+.++++|++|+
T Consensus 302 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~ 380 (520)
T 2z7x_B 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVF-ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380 (520)
T ss_dssp CCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTT-TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEE
T ss_pred CceeEEEcCCCccccccchhhCCcccEEEeECCccChhhh-hhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEE
Confidence 5677777777765432222456777777777776643221 223566777777777663211 11 145567777777
Q ss_pred eccCCC---ceE-EEEecceeeEEEeCCCCccccccccCc-ccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccc
Q 040388 87 AYDNFR---LQR-LHINGVNVCSIDLASRRTLSDINVAPC-KHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKL 161 (226)
Q Consensus 87 l~~c~~---l~~-~~~~~~~L~~L~~~~~~~~~~~~~~~~-~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L 161 (226)
+++|.- +.. .....++|++|++.+.... ....... ++|++|++++|.++. .+..+ ..+++|+.|++++| .+
T Consensus 381 Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~~L~~L~Ls~N~l~~-ip~~~-~~l~~L~~L~L~~N-~l 456 (520)
T 2z7x_B 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT-DTIFRCLPPRIKVLDLHSNKIKS-IPKQV-VKLEALQELNVASN-QL 456 (520)
T ss_dssp CCSSCCBCCGGGCSCCCCTTCCEEECCSSCCC-GGGGGSCCTTCCEEECCSSCCCC-CCGGG-GGCTTCCEEECCSS-CC
T ss_pred CCCCcCCcccccchhccCccCCEEECcCCCCC-cchhhhhcccCCEEECCCCcccc-cchhh-hcCCCCCEEECCCC-cC
Confidence 776641 111 1123466777774432110 0111112 577788887777763 22333 36777888877775 34
Q ss_pred eeeccC----ccccceeEEcc
Q 040388 162 RSAKIS----SRCLKKLFFKG 178 (226)
Q Consensus 162 ~~l~i~----~~~L~~L~l~~ 178 (226)
+.+... .++|+.+++.+
T Consensus 457 ~~l~~~~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 457 KSVPDGIFDRLTSLQKIWLHT 477 (520)
T ss_dssp CCCCTTTTTTCTTCCEEECCS
T ss_pred CccCHHHhccCCcccEEECcC
Confidence 444321 23566666554
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.02 E-value=1.3e-10 Score=95.91 Aligned_cols=168 Identities=20% Similarity=0.165 Sum_probs=113.7
Q ss_pred CCCccccccCCccEEEecccccccc--cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE--ecC
Q 040388 2 NLPQVAFNAESIVVLELQFCKLESL--RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL--ELP 77 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~c~~~~~--~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l--~i~ 77 (226)
.+|..++ +++++|++++|.+... .....+++|++|+|+++.++.-. . ...+++|+.|+++++. +..+ .+.
T Consensus 24 ~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L~Ls~N~-l~~l~~~~~ 97 (290)
T 1p9a_G 24 ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--V-DGTLPVLGTLDLSHNQ-LQSLPLLGQ 97 (290)
T ss_dssp SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--C-CSCCTTCCEEECCSSC-CSSCCCCTT
T ss_pred cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCccc--C-CCCCCcCCEEECCCCc-CCcCchhhc
Confidence 3566554 6899999999987632 23457899999999998873311 1 2678999999999873 2222 245
Q ss_pred CCCCcceEEeccCCCceEEE----EecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCc
Q 040388 78 DLNNLKEFKAYDNFRLQRLH----INGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLE 151 (226)
Q Consensus 78 ~~~~Lk~L~l~~c~~l~~~~----~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le 151 (226)
++++|+.|++++|. ++.+. -..++|++|++.+. .......+..+++|++|++++|.++.. +...+..+++|+
T Consensus 98 ~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L~ 175 (290)
T 1p9a_G 98 TLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL-PAGLLNGLENLD 175 (290)
T ss_dssp TCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC-CTTTTTTCTTCC
T ss_pred cCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc-CHHHhcCcCCCC
Confidence 67899999999884 33221 23578999986543 211222356788999999999988753 234457789999
Q ss_pred EEeccccccceeecc---CccccceeEEcc
Q 040388 152 YLHIDCCMKLRSAKI---SSRCLKKLFFKG 178 (226)
Q Consensus 152 ~L~l~~C~~L~~l~i---~~~~L~~L~l~~ 178 (226)
.|+++++ .++.+.- ....|+.+.+.+
T Consensus 176 ~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 176 TLLLQEN-SLYTIPKGFFGSHLLPFAFLHG 204 (290)
T ss_dssp EEECCSS-CCCCCCTTTTTTCCCSEEECCS
T ss_pred EEECCCC-cCCccChhhcccccCCeEEeCC
Confidence 9999884 3444432 234678888775
No 78
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.01 E-value=2.2e-09 Score=95.28 Aligned_cols=152 Identities=13% Similarity=0.122 Sum_probs=84.2
Q ss_pred ccccccCCccEEEecccccccc--cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCc--eE-EecCCC
Q 040388 5 QVAFNAESIVVLELQFCKLESL--RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGL--KC-LELPDL 79 (226)
Q Consensus 5 ~~~~~~~sL~~L~L~~c~~~~~--~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l--~~-l~i~~~ 79 (226)
..+..+++|++|++++|.+... .....+++|++|+|+++.+++.. ...+.++++|++|++++|.-- .. -.+.++
T Consensus 44 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 122 (549)
T 2z81_A 44 GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS-SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122 (549)
T ss_dssp STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCC-HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC
T ss_pred hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccC-HHHhccCCCCcEEECCCCcccccchhhhhhcc
Confidence 3444566666666666655421 12335666666666666653211 222456666677766665311 00 124456
Q ss_pred CCcceEEeccCCCceEEE----EecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEE
Q 040388 80 NNLKEFKAYDNFRLQRLH----INGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYL 153 (226)
Q Consensus 80 ~~Lk~L~l~~c~~l~~~~----~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L 153 (226)
++|++|++++|..+..+. ...++|++|+..+. .......+..+++|++|+++++.++.. ...+...+++|+.|
T Consensus 123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L 201 (549)
T 2z81_A 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL-LEIFADILSSVRYL 201 (549)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTH-HHHHHHSTTTBSEE
T ss_pred CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccccc-chhhHhhcccccEE
Confidence 777777777775344332 13567777774321 111223455667777777777765432 33445668888888
Q ss_pred ecccc
Q 040388 154 HIDCC 158 (226)
Q Consensus 154 ~l~~C 158 (226)
+++++
T Consensus 202 ~L~~n 206 (549)
T 2z81_A 202 ELRDT 206 (549)
T ss_dssp EEESC
T ss_pred EccCC
Confidence 88875
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.01 E-value=4.1e-10 Score=89.84 Aligned_cols=171 Identities=14% Similarity=0.160 Sum_probs=112.9
Q ss_pred CCc-cccccCCccEEEecccc-cccc-c-CccCCCcccEEEecc-eecCHHHHHHHHhcCCccceeeeeccCCceEE-ec
Q 040388 3 LPQ-VAFNAESIVVLELQFCK-LESL-R-NNVTLSSLRKLCSSH-VYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL-EL 76 (226)
Q Consensus 3 lP~-~~~~~~sL~~L~L~~c~-~~~~-~-~~~~l~sLk~L~L~~-~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l-~i 76 (226)
+|. .+..+++|++|++++|. +... + ...++++|++|++++ +.++.- ....+.++++|++|++++|.- +.+ .+
T Consensus 46 i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i-~~~~f~~l~~L~~L~l~~n~l-~~lp~~ 123 (239)
T 2xwt_C 46 IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI-DPDALKELPLLKFLGIFNTGL-KMFPDL 123 (239)
T ss_dssp ECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE-CTTSEECCTTCCEEEEEEECC-CSCCCC
T ss_pred ECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc-CHHHhCCCCCCCEEeCCCCCC-cccccc
Confidence 344 44578999999999997 6532 2 345789999999998 655321 112356899999999998842 212 24
Q ss_pred CCCCCcc---eEEeccCCCceEEEE----ecceee-EEEeCCC--CccccccccCcccCcEEEeeccc-cCchhHHHHHh
Q 040388 77 PDLNNLK---EFKAYDNFRLQRLHI----NGVNVC-SIDLASR--RTLSDINVAPCKHLEKLKLSGLY-IIDECPSNQVS 145 (226)
Q Consensus 77 ~~~~~Lk---~L~l~~c~~l~~~~~----~~~~L~-~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~-it~~~~~~l~~ 145 (226)
.++++|+ .+++++|..++.+.. ..++|+ ++++.+. .......+.. ++|++|++++|. ++... ...+.
T Consensus 124 ~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~-~~~~~ 201 (239)
T 2xwt_C 124 TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVID-KDAFG 201 (239)
T ss_dssp TTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEEC-TTTTT
T ss_pred ccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCC-HHHhh
Confidence 5667777 999999854554432 367888 9985442 1111112333 789999999994 76532 34456
Q ss_pred cC-CCCcEEeccccccceeeccC-ccccceeEEcc
Q 040388 146 KL-QFLEYLHIDCCMKLRSAKIS-SRCLKKLFFKG 178 (226)
Q Consensus 146 ~~-~~Le~L~l~~C~~L~~l~i~-~~~L~~L~l~~ 178 (226)
.+ ++|+.|++++ ..++.+... ..+|+.|.+.+
T Consensus 202 ~l~~~L~~L~l~~-N~l~~l~~~~~~~L~~L~l~~ 235 (239)
T 2xwt_C 202 GVYSGPSLLDVSQ-TSVTALPSKGLEHLKELIARN 235 (239)
T ss_dssp TCSBCCSEEECTT-CCCCCCCCTTCTTCSEEECTT
T ss_pred ccccCCcEEECCC-CccccCChhHhccCceeeccC
Confidence 77 8999999998 445555433 35677777654
No 80
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.01 E-value=3.9e-10 Score=105.92 Aligned_cols=152 Identities=14% Similarity=0.056 Sum_probs=100.2
Q ss_pred CCcccc--ccCCccEEEecccccc-cc-cCccCCCcccEEEeccee-cCH-H---HHHHHH---hcCCccceeeeeccCC
Q 040388 3 LPQVAF--NAESIVVLELQFCKLE-SL-RNNVTLSSLRKLCSSHVY-EDD-Q---VIEDFV---AGCPLIEYMHVFDCGG 70 (226)
Q Consensus 3 lP~~~~--~~~sL~~L~L~~c~~~-~~-~~~~~l~sLk~L~L~~~~-~~~-~---~l~~l~---~~cp~Le~L~l~~c~~ 70 (226)
+|..+. .+++|++|+|++|.+. .. .....+++|+.|+|+++. +++ . .+..+. ..+|+|+.|++++|.-
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 889987 9999999999999864 22 334579999999999998 666 2 233322 4567999999998843
Q ss_pred ceEE----ecCCCCCcceEEeccCCCceEEE--EecceeeEEEeCCC-CccccccccCccc-CcEEEeeccccCchhHHH
Q 040388 71 LKCL----ELPDLNNLKEFKAYDNFRLQRLH--INGVNVCSIDLASR-RTLSDINVAPCKH-LEKLKLSGLYIIDECPSN 142 (226)
Q Consensus 71 l~~l----~i~~~~~Lk~L~l~~c~~l~~~~--~~~~~L~~L~~~~~-~~~~~~~~~~~~~-L~~L~L~~~~it~~~~~~ 142 (226)
- .+ .++++++|+.|++++|. +..+. ...++|+.|++.+. ....+..+..+++ |++|++++|.++. .+ .
T Consensus 561 ~-~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~-lp-~ 636 (876)
T 4ecn_A 561 E-EFPASASLQKMVKLGLLDCVHNK-VRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IP-N 636 (876)
T ss_dssp C-BCCCHHHHTTCTTCCEEECTTSC-CCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCS-CC-S
T ss_pred C-ccCChhhhhcCCCCCEEECCCCC-cccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCc-Cc-h
Confidence 2 33 25678889999998885 22222 23578888885443 1122233566677 8888888887762 22 2
Q ss_pred HHhcC--CCCcEEecccc
Q 040388 143 QVSKL--QFLEYLHIDCC 158 (226)
Q Consensus 143 l~~~~--~~Le~L~l~~C 158 (226)
.+... ++|+.|+++++
T Consensus 637 ~~~~~~~~~L~~L~Ls~N 654 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYN 654 (876)
T ss_dssp CCCTTCSSCEEEEECCSS
T ss_pred hhhccccCCCCEEECcCC
Confidence 22222 23666766665
No 81
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.01 E-value=1.2e-09 Score=102.41 Aligned_cols=79 Identities=16% Similarity=0.161 Sum_probs=39.1
Q ss_pred CCccEEEecccccccc--cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE---ecCCCCCcceE
Q 040388 11 ESIVVLELQFCKLESL--RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL---ELPDLNNLKEF 85 (226)
Q Consensus 11 ~sL~~L~L~~c~~~~~--~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l---~i~~~~~Lk~L 85 (226)
++|++|+|++|.+... ....++++|++|+|+++......-...+.++++|+.|++++|. +..+ .+.++++|++|
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTSSCSCSSCCCE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHhHccCCcccCEe
Confidence 4666666666665421 2234566666666666532111101124556666666666553 2222 23445555555
Q ss_pred EeccC
Q 040388 86 KAYDN 90 (226)
Q Consensus 86 ~l~~c 90 (226)
++++|
T Consensus 103 ~Ls~n 107 (844)
T 3j0a_A 103 RLYFC 107 (844)
T ss_dssp ECTTC
T ss_pred eCcCC
Confidence 55555
No 82
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.01 E-value=1.7e-10 Score=108.33 Aligned_cols=204 Identities=10% Similarity=0.063 Sum_probs=111.7
Q ss_pred CCCccccccCCccEEEecccc-ccc--cc--------CccCCCcccEEEecceecCHHHHHH--HHhcCCccceeeeecc
Q 040388 2 NLPQVAFNAESIVVLELQFCK-LES--LR--------NNVTLSSLRKLCSSHVYEDDQVIED--FVAGCPLIEYMHVFDC 68 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~c~-~~~--~~--------~~~~l~sLk~L~L~~~~~~~~~l~~--l~~~cp~Le~L~l~~c 68 (226)
.+|..+..+++|++|+|++|. +.. .+ ....+++|+.|+|+++.++ .+.. .+.++++|+.|++++|
T Consensus 506 ~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N 583 (876)
T 4ecn_A 506 QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--EFPASASLQKMVKLGLLDCVHN 583 (876)
T ss_dssp SCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--BCCCHHHHTTCTTCCEEECTTS
T ss_pred cChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC--ccCChhhhhcCCCCCEEECCCC
Confidence 468888888889999988886 431 11 2234668888888888775 3333 4677888888888776
Q ss_pred CCceEE-ecCCCCC------------------------cceEEeccCCCceEEE---Ee--cceeeEEEeCCC--Ccc-c
Q 040388 69 GGLKCL-ELPDLNN------------------------LKEFKAYDNFRLQRLH---IN--GVNVCSIDLASR--RTL-S 115 (226)
Q Consensus 69 ~~l~~l-~i~~~~~------------------------Lk~L~l~~c~~l~~~~---~~--~~~L~~L~~~~~--~~~-~ 115 (226)
.-- .+ .++.+++ |+.|++++|. +..+. .. .++|+.|++.+. ... .
T Consensus 584 ~l~-~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip 661 (876)
T 4ecn_A 584 KVR-HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGR 661 (876)
T ss_dssp CCC-BCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTTTSS
T ss_pred Ccc-cchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcCCCccc
Confidence 311 11 2233344 4445554442 11111 00 123555553321 000 0
Q ss_pred c--cccc--CcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccceeeccC---c--------cccceeEEcc-e
Q 040388 116 D--INVA--PCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAKIS---S--------RCLKKLFFKG-E 179 (226)
Q Consensus 116 ~--~~~~--~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~i~---~--------~~L~~L~l~~-~ 179 (226)
. ..+. .+++|+.|++++|.++. .+..++..+++|+.|+++++ .++.+... . ++|+.|++.+ .
T Consensus 662 ~l~~~l~~~~~~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~ 739 (876)
T 4ecn_A 662 NISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK 739 (876)
T ss_dssp SCSSCTTTCCCCCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC
T ss_pred cchhhhccccCCCcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCCC
Confidence 0 0111 33478888888887773 34555667888888888875 33333221 0 1677777765 1
Q ss_pred ---E--EE---eCCCcceEEEeecc---eeecc-ccccceeeeE
Q 040388 180 ---F--ML---DTSNLSTFEYQGNL---VSFSS-NALALSQIIL 211 (226)
Q Consensus 180 ---~--~i---~~p~L~sl~~~g~~---~~~~~-~~~~l~~~~~ 211 (226)
+ .+ ..|+|+.|...++. +|... +.+.|+.+.+
T Consensus 740 L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~L 783 (876)
T 4ecn_A 740 LTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGI 783 (876)
T ss_dssp CCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEEC
T ss_pred CccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEEC
Confidence 1 11 45677777766653 23333 4455555554
No 83
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.01 E-value=1.5e-09 Score=94.92 Aligned_cols=136 Identities=17% Similarity=0.132 Sum_probs=63.4
Q ss_pred CCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccC---------CceEE-------
Q 040388 11 ESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCG---------GLKCL------- 74 (226)
Q Consensus 11 ~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~---------~l~~l------- 74 (226)
++|++|++++|.+...+. ..++|++|+++++.+++ +.. +.++++|++|++++|. .++.+
T Consensus 111 ~~L~~L~l~~n~l~~l~~--~~~~L~~L~L~~n~l~~--lp~-~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l 185 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSD--LPPLLEYLGVSNNQLEK--LPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 185 (454)
T ss_dssp TTCCEEECCSSCCSCCCS--CCTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCC
T ss_pred CCCcEEECCCCccCcccC--CCCCCCEEECcCCCCCC--Ccc-cCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcC
Confidence 344555555444432111 11456666666555422 221 4455555555555542 12222
Q ss_pred ----ecCCCCCcceEEeccCCCceEEEEecceeeEEEeCCC-CccccccccCcccCcEEEeeccccCchhHHHHHhcCCC
Q 040388 75 ----ELPDLNNLKEFKAYDNFRLQRLHINGVNVCSIDLASR-RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQF 149 (226)
Q Consensus 75 ----~i~~~~~Lk~L~l~~c~~l~~~~~~~~~L~~L~~~~~-~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~ 149 (226)
.+.++++|+.|++++|. +..+....++|++|++.+. ....+ .+..+++|++|++++|.++.- . ...++
T Consensus 186 ~~l~~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l--~---~~~~~ 258 (454)
T 1jl5_A 186 EELPELQNLPFLTAIYADNNS-LKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTL--P---DLPPS 258 (454)
T ss_dssp SSCCCCTTCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSC--C---SCCTT
T ss_pred CcCccccCCCCCCEEECCCCc-CCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCcc--c---ccccc
Confidence 23345666666666663 2222222346666664332 11111 245666777777777665541 1 12355
Q ss_pred CcEEecccc
Q 040388 150 LEYLHIDCC 158 (226)
Q Consensus 150 Le~L~l~~C 158 (226)
|+.|+++++
T Consensus 259 L~~L~l~~N 267 (454)
T 1jl5_A 259 LEALNVRDN 267 (454)
T ss_dssp CCEEECCSS
T ss_pred cCEEECCCC
Confidence 566655554
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.00 E-value=8.2e-11 Score=97.65 Aligned_cols=148 Identities=13% Similarity=0.028 Sum_probs=75.3
Q ss_pred cCCccEEEeccccccc-ccC-c--cCCCcccEEEecceecCHH--HHH-HHHhcCCccceeeeeccCCceE--EecCCCC
Q 040388 10 AESIVVLELQFCKLES-LRN-N--VTLSSLRKLCSSHVYEDDQ--VIE-DFVAGCPLIEYMHVFDCGGLKC--LELPDLN 80 (226)
Q Consensus 10 ~~sL~~L~L~~c~~~~-~~~-~--~~l~sLk~L~L~~~~~~~~--~l~-~l~~~cp~Le~L~l~~c~~l~~--l~i~~~~ 80 (226)
.++|++|++++|.+.. .+. . ..+++|++|+|+++.+++. .+. .-+..+++|++|++++|.-... -.+++++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 3558888888877642 122 2 4577888888888777431 011 1234677888888877643111 1244567
Q ss_pred CcceEEeccCCCceE-------EEEecceeeEEEeCCCCcc--ccc---cccCcccCcEEEeeccccCchhHHHHHhcC-
Q 040388 81 NLKEFKAYDNFRLQR-------LHINGVNVCSIDLASRRTL--SDI---NVAPCKHLEKLKLSGLYIIDECPSNQVSKL- 147 (226)
Q Consensus 81 ~Lk~L~l~~c~~l~~-------~~~~~~~L~~L~~~~~~~~--~~~---~~~~~~~L~~L~L~~~~it~~~~~~l~~~~- 147 (226)
+|++|++++|..... .....++|++|++.+.... ... .+..+++|++|++++|.+++..+..+ ..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~-~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSA-PRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC-SSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhH-Hhcc
Confidence 778888777742110 0013455555553332100 000 12344556666666665554322111 222
Q ss_pred --CCCcEEecccc
Q 040388 148 --QFLEYLHIDCC 158 (226)
Q Consensus 148 --~~Le~L~l~~C 158 (226)
++|+.|+++++
T Consensus 249 ~~~~L~~L~Ls~N 261 (310)
T 4glp_A 249 WSSALNSLNLSFA 261 (310)
T ss_dssp CCTTCCCEECCSS
T ss_pred CcCcCCEEECCCC
Confidence 45666666553
No 85
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.00 E-value=5.6e-10 Score=101.79 Aligned_cols=55 Identities=13% Similarity=0.178 Sum_probs=31.7
Q ss_pred CccEEEecccccccc--cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeec
Q 040388 12 SIVVLELQFCKLESL--RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFD 67 (226)
Q Consensus 12 sL~~L~L~~c~~~~~--~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~ 67 (226)
+|++|++++|.+... .....+++|++|+++++.+++. ....+.++++|+.|++++
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~ 305 (680)
T 1ziw_A 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL-FSHSLHGLFNVRYLNLKR 305 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEE-CTTTTTTCTTCCEEECTT
T ss_pred CCCEEECCCCCcCccCcccccCcccccEeeCCCCccCcc-ChhhhcCCCCccEEeccc
Confidence 477888877776421 2234577777777777765321 111245566666666654
No 86
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.99 E-value=2.9e-10 Score=101.68 Aligned_cols=42 Identities=17% Similarity=0.093 Sum_probs=31.5
Q ss_pred cccCcccCcEEEeeccccCchh-HHHHHhcCCCCcEEeccccc
Q 040388 118 NVAPCKHLEKLKLSGLYIIDEC-PSNQVSKLQFLEYLHIDCCM 159 (226)
Q Consensus 118 ~~~~~~~L~~L~L~~~~it~~~-~~~l~~~~~~Le~L~l~~C~ 159 (226)
.+..+++|++|++++|.++... ....+..+++|+.|+++++.
T Consensus 372 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 372 GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414 (562)
T ss_dssp TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred hhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc
Confidence 4567889999999999887621 22345778899999998764
No 87
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.99 E-value=1.3e-10 Score=101.00 Aligned_cols=62 Identities=16% Similarity=0.165 Sum_probs=30.0
Q ss_pred ccccCCccEEEeccccccc--c-cCccCCC----cccEEEecceecCH---HHHHHHHhcCCccceeeeecc
Q 040388 7 AFNAESIVVLELQFCKLES--L-RNNVTLS----SLRKLCSSHVYEDD---QVIEDFVAGCPLIEYMHVFDC 68 (226)
Q Consensus 7 ~~~~~sL~~L~L~~c~~~~--~-~~~~~l~----sLk~L~L~~~~~~~---~~l~~l~~~cp~Le~L~l~~c 68 (226)
+..+++|++|++++|.+.. . .....++ +|++|+|++|.+++ ..+...+..+++|++|++++|
T Consensus 52 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n 123 (461)
T 1z7x_W 52 LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123 (461)
T ss_dssp HHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS
T ss_pred HHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCC
Confidence 3445556666666555431 0 0011122 46666666665533 233444555666666666554
No 88
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.98 E-value=3.6e-10 Score=86.35 Aligned_cols=94 Identities=17% Similarity=0.175 Sum_probs=73.7
Q ss_pred CCCccccccCCccEEEeccccccc--ccCccCCCcccEEEeccee-cCHHHHHHHHhc---CCccceeeeeccCCceEE-
Q 040388 2 NLPQVAFNAESIVVLELQFCKLES--LRNNVTLSSLRKLCSSHVY-EDDQVIEDFVAG---CPLIEYMHVFDCGGLKCL- 74 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~c~~~~--~~~~~~l~sLk~L~L~~~~-~~~~~l~~l~~~---cp~Le~L~l~~c~~l~~l- 74 (226)
.||......-.|++|++++|.+.. .....++++|+.|+|++|. ++|.++..+... |+.|++|++++|.+++.-
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 466654445589999999998652 1223479999999999997 599999998863 889999999999876432
Q ss_pred --ecCCCCCcceEEeccCCCceE
Q 040388 75 --ELPDLNNLKEFKAYDNFRLQR 95 (226)
Q Consensus 75 --~i~~~~~Lk~L~l~~c~~l~~ 95 (226)
.+..|++|++|++++|..+++
T Consensus 132 l~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHhcCCCCCEEECCCCCCCCc
Confidence 345689999999999976554
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.98 E-value=6.7e-11 Score=101.01 Aligned_cols=150 Identities=13% Similarity=0.041 Sum_probs=83.5
Q ss_pred cccCCccEEEeccccccc-----cc-CccCCCcccEEEecceecCHHH---HHHHHhcC---------CccceeeeeccC
Q 040388 8 FNAESIVVLELQFCKLES-----LR-NNVTLSSLRKLCSSHVYEDDQV---IEDFVAGC---------PLIEYMHVFDCG 69 (226)
Q Consensus 8 ~~~~sL~~L~L~~c~~~~-----~~-~~~~l~sLk~L~L~~~~~~~~~---l~~l~~~c---------p~Le~L~l~~c~ 69 (226)
..+++|++|+|++|.+.. .+ ....+++|++|+|++|.+++.. +...+..+ |.|++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 567888888888887653 11 1235788888888888774333 33333344 788888887763
Q ss_pred C----ceEE--ecCCCCCcceEEeccCCCceE---------EEEecceeeEEEeCCCCc------cccccccCcccCcEE
Q 040388 70 G----LKCL--ELPDLNNLKEFKAYDNFRLQR---------LHINGVNVCSIDLASRRT------LSDINVAPCKHLEKL 128 (226)
Q Consensus 70 ~----l~~l--~i~~~~~Lk~L~l~~c~~l~~---------~~~~~~~L~~L~~~~~~~------~~~~~~~~~~~L~~L 128 (226)
- +..+ .+..+++|++|++++|. +.. .....++|++|++.+... .....+..+++|++|
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L 249 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 249 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence 2 1110 12235677777777663 210 111346677776443211 011124556677777
Q ss_pred EeeccccCchhHHH---HHh--cCCCCcEEecccc
Q 040388 129 KLSGLYIIDECPSN---QVS--KLQFLEYLHIDCC 158 (226)
Q Consensus 129 ~L~~~~it~~~~~~---l~~--~~~~Le~L~l~~C 158 (226)
++++|.+++..... .+. .+++|+.|++++|
T Consensus 250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n 284 (386)
T 2ca6_A 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN 284 (386)
T ss_dssp ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS
T ss_pred ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC
Confidence 77777766543222 121 2666777777665
No 90
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.97 E-value=2.8e-10 Score=103.81 Aligned_cols=171 Identities=16% Similarity=0.100 Sum_probs=96.1
Q ss_pred CccccccCCccEEEeccccccc-c--cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCC--ce--EEec
Q 040388 4 PQVAFNAESIVVLELQFCKLES-L--RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGG--LK--CLEL 76 (226)
Q Consensus 4 P~~~~~~~sL~~L~L~~c~~~~-~--~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~--l~--~l~i 76 (226)
|..+..+++|++|++++|.+.. . ....++++|++|+++++.++.-. ...+..+|.|+.|++++|.- +. .-.+
T Consensus 398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~ 476 (680)
T 1ziw_A 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT-RNSFALVPSLQRLMLRRVALKNVDSSPSPF 476 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECC-TTTTTTCTTCCEEECTTSCCBCTTCSSCTT
T ss_pred hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeC-hhhhhcCcccccchhccccccccccCCccc
Confidence 4555678899999999988741 1 23356889999999888762111 11245678888888877632 11 1124
Q ss_pred CCCCCcceEEeccCCCceEEE----EecceeeEEEeCCC--Ccc--------ccccccCcccCcEEEeeccccCchhHHH
Q 040388 77 PDLNNLKEFKAYDNFRLQRLH----INGVNVCSIDLASR--RTL--------SDINVAPCKHLEKLKLSGLYIIDECPSN 142 (226)
Q Consensus 77 ~~~~~Lk~L~l~~c~~l~~~~----~~~~~L~~L~~~~~--~~~--------~~~~~~~~~~L~~L~L~~~~it~~~~~~ 142 (226)
.++++|+.|++++|. +..+. ...++|++|++.+. ... ....+..+++|++|++++|.++.. +..
T Consensus 477 ~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i-~~~ 554 (680)
T 1ziw_A 477 QPLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI-PVE 554 (680)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCC-CTT
T ss_pred ccCCCCCEEECCCCC-CCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCC-CHH
Confidence 456777777777663 22211 13456666664332 000 001245666777777777666532 223
Q ss_pred HHhcCCCCcEEeccccccceeeccC----ccccceeEEcc
Q 040388 143 QVSKLQFLEYLHIDCCMKLRSAKIS----SRCLKKLFFKG 178 (226)
Q Consensus 143 l~~~~~~Le~L~l~~C~~L~~l~i~----~~~L~~L~l~~ 178 (226)
.+.++++|+.|+++++ .++.+... .++|+.|++.+
T Consensus 555 ~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~ 593 (680)
T 1ziw_A 555 VFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQK 593 (680)
T ss_dssp TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTT
T ss_pred HcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCC
Confidence 3456666777776653 33333321 14566666654
No 91
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.96 E-value=6.9e-10 Score=98.09 Aligned_cols=186 Identities=11% Similarity=0.029 Sum_probs=107.6
Q ss_pred CCCccc-----cccCCccEEEecccccccccCc-cC---CCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCce
Q 040388 2 NLPQVA-----FNAESIVVLELQFCKLESLRNN-VT---LSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLK 72 (226)
Q Consensus 2 ~lP~~~-----~~~~sL~~L~L~~c~~~~~~~~-~~---l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~ 72 (226)
.+|..+ ..+++|+.+++++|.+..+... .. -++|+.|+++++.+.+..+ ...++.|++|++++|.--.
T Consensus 262 ~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~ 338 (520)
T 2z7x_B 262 QLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC---PSKISPFLHLDFSNNLLTD 338 (520)
T ss_dssp CCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCC---CSSCCCCCEEECCSSCCCT
T ss_pred ccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccc---hhhCCcccEEEeECCccCh
Confidence 356666 5677788888887776321010 11 1468888888877632211 2567888888888774211
Q ss_pred --EEecCCCCCcceEEeccCCCceE---E---EEecceeeEEEeCCC--Cc-cccccccCcccCcEEEeeccccCchhHH
Q 040388 73 --CLELPDLNNLKEFKAYDNFRLQR---L---HINGVNVCSIDLASR--RT-LSDINVAPCKHLEKLKLSGLYIIDECPS 141 (226)
Q Consensus 73 --~l~i~~~~~Lk~L~l~~c~~l~~---~---~~~~~~L~~L~~~~~--~~-~~~~~~~~~~~L~~L~L~~~~it~~~~~ 141 (226)
.-.+.++++|+.|++++|. +.. + ....++|++|++.+. .. .....+..+++|++|++++|.+++..+.
T Consensus 339 ~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 417 (520)
T 2z7x_B 339 TVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR 417 (520)
T ss_dssp TTTTTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGG
T ss_pred hhhhhhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhh
Confidence 1124567788888888774 221 1 124577888885442 11 1111245667888888888877764432
Q ss_pred HHHhcC-CCCcEEeccccccceeecc---CccccceeEEcc-eE-------EEeCCCcceEEEeecc
Q 040388 142 NQVSKL-QFLEYLHIDCCMKLRSAKI---SSRCLKKLFFKG-EF-------MLDTSNLSTFEYQGNL 196 (226)
Q Consensus 142 ~l~~~~-~~Le~L~l~~C~~L~~l~i---~~~~L~~L~l~~-~~-------~i~~p~L~sl~~~g~~ 196 (226)
.+ ++|+.|++++| .++.++- ..++|+.|++.+ .+ .-..++|+.+...|+.
T Consensus 418 ----~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 418 ----CLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp ----SCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ----hhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCC
Confidence 23 67888888875 3333321 235677777776 11 1234677777777663
No 92
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.93 E-value=8.6e-10 Score=92.04 Aligned_cols=151 Identities=13% Similarity=0.146 Sum_probs=97.8
Q ss_pred CccccccCCccEEEecccccccccC-----------------------ccCCCcccEEEecceecCHH-HHHHHHhcCCc
Q 040388 4 PQVAFNAESIVVLELQFCKLESLRN-----------------------NVTLSSLRKLCSSHVYEDDQ-VIEDFVAGCPL 59 (226)
Q Consensus 4 P~~~~~~~sL~~L~L~~c~~~~~~~-----------------------~~~l~sLk~L~L~~~~~~~~-~l~~l~~~cp~ 59 (226)
|..+..+++|++|++++|.+...+. ...+++|+.|+++++.++.. .....+.++++
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 172 (330)
T 1xku_A 93 PGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172 (330)
T ss_dssp TTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT
T ss_pred HHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCC
Confidence 4555566777777777665432111 23466777777777766321 22334678999
Q ss_pred cceeeeeccCCceEEecCCCCCcceEEeccCCCceEEE----EecceeeEEEeCCC--CccccccccCcccCcEEEeecc
Q 040388 60 IEYMHVFDCGGLKCLELPDLNNLKEFKAYDNFRLQRLH----INGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGL 133 (226)
Q Consensus 60 Le~L~l~~c~~l~~l~i~~~~~Lk~L~l~~c~~l~~~~----~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~ 133 (226)
|++|++++|. +..+...-.++|++|++++|. +..+. ...++|++|++.+. .......+..+++|++|++++|
T Consensus 173 L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 250 (330)
T 1xku_A 173 LSYIRIADTN-ITTIPQGLPPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250 (330)
T ss_dssp CCEEECCSSC-CCSCCSSCCTTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS
T ss_pred cCEEECCCCc-cccCCccccccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC
Confidence 9999999874 332322223789999999884 44332 13578999996543 1112224677899999999999
Q ss_pred ccCchhHHHHHhcCCCCcEEecccc
Q 040388 134 YIIDECPSNQVSKLQFLEYLHIDCC 158 (226)
Q Consensus 134 ~it~~~~~~l~~~~~~Le~L~l~~C 158 (226)
.++.- ...+..+++|+.|+++++
T Consensus 251 ~l~~l--p~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 251 KLVKV--PGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp CCSSC--CTTTTTCSSCCEEECCSS
T ss_pred cCccC--ChhhccCCCcCEEECCCC
Confidence 98742 233467899999999985
No 93
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.92 E-value=2.7e-10 Score=86.00 Aligned_cols=129 Identities=16% Similarity=0.080 Sum_probs=77.1
Q ss_pred CCccEEEecccccc--cccCc-cCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE--ecCCCCCcceE
Q 040388 11 ESIVVLELQFCKLE--SLRNN-VTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL--ELPDLNNLKEF 85 (226)
Q Consensus 11 ~sL~~L~L~~c~~~--~~~~~-~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l--~i~~~~~Lk~L 85 (226)
++|++|++++|.+. ..+.. ..+++|+.|++++|.+++- ..+..+++|+.|++++|.--..+ .+.++++|+.|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 56777777777664 32222 4567777777777766332 33455666666666665321111 01124556666
Q ss_pred EeccCCCceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhH--HHHHhcCCCCcEEecccccc
Q 040388 86 KAYDNFRLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECP--SNQVSKLQFLEYLHIDCCMK 160 (226)
Q Consensus 86 ~l~~c~~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~--~~l~~~~~~Le~L~l~~C~~ 160 (226)
++++|. +.. .+....+..+++|++|++++|.+++... ...+..+++|+.|++.+|..
T Consensus 101 ~Ls~N~-l~~-----------------~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 101 NLSGNK-LKD-----------------ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp ECBSSS-CCS-----------------SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred eccCCc-cCc-----------------chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 655552 111 0111245678899999999999876432 24678899999999998754
No 94
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.92 E-value=3.6e-09 Score=94.93 Aligned_cols=132 Identities=17% Similarity=0.122 Sum_probs=87.3
Q ss_pred CCccccccCCccEEEecccccccc-c-CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe---cC
Q 040388 3 LPQVAFNAESIVVLELQFCKLESL-R-NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---LP 77 (226)
Q Consensus 3 lP~~~~~~~sL~~L~L~~c~~~~~-~-~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---i~ 77 (226)
+|..+- +++++|+|++|.+... + ...++++|++|+|++|.++.- ....+.++++|++|++++| .++.+. +.
T Consensus 46 vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~ 121 (635)
T 4g8a_A 46 IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGN-PIQSLALGAFS 121 (635)
T ss_dssp CCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTC-CCCEECGGGGT
T ss_pred cCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCC-cCCCCCHHHhc
Confidence 454432 4789999999987643 2 345789999999999876310 0113567899999999987 355553 56
Q ss_pred CCCCcceEEeccCC--CceEE-EEecceeeEEEeCCC---CccccccccCcccCcEEEeeccccCch
Q 040388 78 DLNNLKEFKAYDNF--RLQRL-HINGVNVCSIDLASR---RTLSDINVAPCKHLEKLKLSGLYIIDE 138 (226)
Q Consensus 78 ~~~~Lk~L~l~~c~--~l~~~-~~~~~~L~~L~~~~~---~~~~~~~~~~~~~L~~L~L~~~~it~~ 138 (226)
++++|++|++++|. .+... .-..++|++|++.+. .......+..+++|++|++++|.++..
T Consensus 122 ~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 122 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 78899999999884 22211 124678888885432 111223456678888888888877653
No 95
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.91 E-value=6.7e-10 Score=94.11 Aligned_cols=66 Identities=12% Similarity=0.064 Sum_probs=44.2
Q ss_pred CccccccCCccEEEeccccccccc------CccCCC-cccEEEecceecC---HHHHHHHHhcC-CccceeeeeccC
Q 040388 4 PQVAFNAESIVVLELQFCKLESLR------NNVTLS-SLRKLCSSHVYED---DQVIEDFVAGC-PLIEYMHVFDCG 69 (226)
Q Consensus 4 P~~~~~~~sL~~L~L~~c~~~~~~------~~~~l~-sLk~L~L~~~~~~---~~~l~~l~~~c-p~Le~L~l~~c~ 69 (226)
|..+...++|++|+|++|.+.... ....++ +|++|+|++|.++ ...+..++..+ +.|++|++++|.
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 91 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF 91 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc
Confidence 334444566899999988875321 123567 8899999888874 33455555554 888888888874
No 96
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.91 E-value=5.6e-10 Score=90.70 Aligned_cols=159 Identities=15% Similarity=0.138 Sum_probs=112.4
Q ss_pred cCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE-ecCCCCCcceEEec
Q 040388 10 AESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL-ELPDLNNLKEFKAY 88 (226)
Q Consensus 10 ~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l-~i~~~~~Lk~L~l~ 88 (226)
..+++.++++++.+...+....+++|++|+++++.++. +. -+..+++|++|++++|. +..+ .+.++++|+.|+++
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~-i~~~~~l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQ-ISDLSPLKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECC
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCc-cCCChhhccCCCCCEEECC
Confidence 44567777888877643344578999999999998742 12 26789999999999883 2222 26788999999999
Q ss_pred cCC--CceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccceeec-
Q 040388 89 DNF--RLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAK- 165 (226)
Q Consensus 89 ~c~--~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~- 165 (226)
+|. .+..+. .++|++|++.+........+..+++|++|++++|.+++.. .+..+++|+.|+++++. ++.+.
T Consensus 94 ~N~l~~l~~~~--~~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~-i~~~~~ 167 (263)
T 1xeu_A 94 RNRLKNLNGIP--SACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNE-ITNTGG 167 (263)
T ss_dssp SSCCSCCTTCC--CSSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTTSC-CCBCTT
T ss_pred CCccCCcCccc--cCcccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh---HHccCCCCCEEECCCCc-CcchHH
Confidence 985 222222 1899999965531111124678899999999999998742 35789999999999863 33332
Q ss_pred cC-ccccceeEEcc
Q 040388 166 IS-SRCLKKLFFKG 178 (226)
Q Consensus 166 i~-~~~L~~L~l~~ 178 (226)
+. .++|+.|++.+
T Consensus 168 l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 168 LTRLKKVNWIDLTG 181 (263)
T ss_dssp STTCCCCCEEEEEE
T ss_pred hccCCCCCEEeCCC
Confidence 22 35788888876
No 97
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.88 E-value=1e-09 Score=95.35 Aligned_cols=153 Identities=13% Similarity=0.011 Sum_probs=85.7
Q ss_pred cccccCCccEEEecccccccc------c-CccCCCcccEEEecceecCHHH---HHHHHhcCCccceeeeeccCCc----
Q 040388 6 VAFNAESIVVLELQFCKLESL------R-NNVTLSSLRKLCSSHVYEDDQV---IEDFVAGCPLIEYMHVFDCGGL---- 71 (226)
Q Consensus 6 ~~~~~~sL~~L~L~~c~~~~~------~-~~~~l~sLk~L~L~~~~~~~~~---l~~l~~~cp~Le~L~l~~c~~l---- 71 (226)
.+..+++|++|++++|.+... + ....+++|++|++++|.+++.. +...+..++.|++|++++|.--
T Consensus 222 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 301 (461)
T 1z7x_W 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH
Confidence 334455666666666654310 0 0113566666666666665443 3333445666666666665310
Q ss_pred eEE---ecCCCCCcceEEeccCCCceE-----E---EEecceeeEEEeCCCCc-c--ccc---cc-cCcccCcEEEeecc
Q 040388 72 KCL---ELPDLNNLKEFKAYDNFRLQR-----L---HINGVNVCSIDLASRRT-L--SDI---NV-APCKHLEKLKLSGL 133 (226)
Q Consensus 72 ~~l---~i~~~~~Lk~L~l~~c~~l~~-----~---~~~~~~L~~L~~~~~~~-~--~~~---~~-~~~~~L~~L~L~~~ 133 (226)
..+ -....++|++|++++|. +.. + ....++|++|++.+... . ... .+ ...++|++|++++|
T Consensus 302 ~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 302 RLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC
Confidence 000 00112588888888885 221 1 11347899998654311 0 000 11 12679999999999
Q ss_pred ccCchh---HHHHHhcCCCCcEEeccccc
Q 040388 134 YIIDEC---PSNQVSKLQFLEYLHIDCCM 159 (226)
Q Consensus 134 ~it~~~---~~~l~~~~~~Le~L~l~~C~ 159 (226)
.+++.. +...+..+++|+.|++++|.
T Consensus 381 ~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 381 DVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp CCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred CCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 998743 23445678999999999873
No 98
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.87 E-value=1.5e-09 Score=87.24 Aligned_cols=162 Identities=17% Similarity=0.142 Sum_probs=110.0
Q ss_pred CCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE---ecCCCCCcceEEe
Q 040388 11 ESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL---ELPDLNNLKEFKA 87 (226)
Q Consensus 11 ~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l---~i~~~~~Lk~L~l 87 (226)
++.++++++++.+...+... .+++++|+|+++.++.-. ...+.++++|++|+++++. +..+ .+.++++|+.|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLS-DATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCCC-CCCCCEEEccCCCcCccC-HhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEEC
Confidence 56789999999887544332 379999999999873321 1236788999999999973 3322 2466899999999
Q ss_pred ccCCCceEEE----EecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccc
Q 040388 88 YDNFRLQRLH----INGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKL 161 (226)
Q Consensus 88 ~~c~~l~~~~----~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L 161 (226)
++|. +..+. ...++|++|++.+. .......+..+++|++|++++|.++... ...+..+++|+.|+++++ .+
T Consensus 91 ~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N-~l 167 (251)
T 3m19_A 91 ANNQ-LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP-AGAFDKLTNLQTLSLSTN-QL 167 (251)
T ss_dssp TTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS-CC
T ss_pred CCCc-ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC-HHHcCcCcCCCEEECCCC-cC
Confidence 9885 33222 24578999985543 2112223567889999999999887542 234567889999999885 33
Q ss_pred eeecc---C-ccccceeEEcc
Q 040388 162 RSAKI---S-SRCLKKLFFKG 178 (226)
Q Consensus 162 ~~l~i---~-~~~L~~L~l~~ 178 (226)
+.+.. . .++|+.|++.+
T Consensus 168 ~~~~~~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 168 QSVPHGAFDRLGKLQTITLFG 188 (251)
T ss_dssp SCCCTTTTTTCTTCCEEECCS
T ss_pred CccCHHHHhCCCCCCEEEeeC
Confidence 43331 1 25677887765
No 99
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.86 E-value=2.3e-09 Score=81.55 Aligned_cols=131 Identities=15% Similarity=-0.016 Sum_probs=79.4
Q ss_pred ccccCCccEEEecccccccccCccCC-CcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe---cCCCCCc
Q 040388 7 AFNAESIVVLELQFCKLESLRNNVTL-SSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---LPDLNNL 82 (226)
Q Consensus 7 ~~~~~sL~~L~L~~c~~~~~~~~~~l-~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---i~~~~~L 82 (226)
...+.+|++|++++|.+...+....+ ++|+.|+|+++.+++- .-+.++++|+.|++++|. +..+. +.++++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCc-ccccCcchhhcCCCC
Confidence 35677788888888876643333333 4788888877776431 234556667777766652 33331 1345666
Q ss_pred ceEEeccCCCceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchh--HHHHHhcCCCCcEEeccccc
Q 040388 83 KEFKAYDNFRLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDEC--PSNQVSKLQFLEYLHIDCCM 159 (226)
Q Consensus 83 k~L~l~~c~~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~--~~~l~~~~~~Le~L~l~~C~ 159 (226)
+.|++++|. +.. .+....+..+++|++|++++|.++... ....+..+++|+.|++.++.
T Consensus 91 ~~L~L~~N~-i~~-----------------~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 91 TELILTNNS-LVE-----------------LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CEEECCSCC-CCC-----------------GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CEEECCCCc-CCc-----------------chhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 666666552 111 000013567889999999999886532 12256788999999988764
No 100
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.86 E-value=3.8e-10 Score=83.46 Aligned_cols=126 Identities=16% Similarity=0.067 Sum_probs=75.7
Q ss_pred cCCccEEEecccccc--ccc-CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE--ecCCCCCcce
Q 040388 10 AESIVVLELQFCKLE--SLR-NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL--ELPDLNNLKE 84 (226)
Q Consensus 10 ~~sL~~L~L~~c~~~--~~~-~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l--~i~~~~~Lk~ 84 (226)
.++|++|++++|.+. ..+ ....+++|+.|+++++.+++- ..+.++++|+.|++++|.--..+ .+.++++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 357888888888765 322 234678888888888776332 33566677777777766321101 1122566666
Q ss_pred EEeccCCCceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhH--HHHHhcCCCCcEEecc
Q 040388 85 FKAYDNFRLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECP--SNQVSKLQFLEYLHID 156 (226)
Q Consensus 85 L~l~~c~~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~--~~l~~~~~~Le~L~l~ 156 (226)
|++++|. +..+ +....+..+++|++|++++|.+++... ...+..+++|+.|++.
T Consensus 93 L~ls~N~-i~~~-----------------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNK-IKDL-----------------STIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSC-CCSH-----------------HHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCc-CCCh-----------------HHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 6666552 1110 001235677888888888888765432 2456778888888765
No 101
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.86 E-value=4.2e-09 Score=94.16 Aligned_cols=162 Identities=16% Similarity=0.116 Sum_probs=90.3
Q ss_pred CCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE-----ecCCCCCcceE
Q 040388 11 ESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL-----ELPDLNNLKEF 85 (226)
Q Consensus 11 ~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l-----~i~~~~~Lk~L 85 (226)
.+|++|++++|.+........+++|++|+++++.+++.. ...+.++++|++|++++|. +..+ .+.++++|+.|
T Consensus 331 ~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L 408 (562)
T 3a79_B 331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSV-FQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETL 408 (562)
T ss_dssp CCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTT-TTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEE
T ss_pred CcceEEEccCCCcccccCccCCCCceEEECCCCccccch-hhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEE
Confidence 567777777777653222245777777777777764322 1224567777777777762 2221 14556777777
Q ss_pred EeccCCC---ce-EEEEecceeeEEEeCCCCccccccccCc-ccCcEEEeeccccCchhHHHHHhcCCCCcEEecccccc
Q 040388 86 KAYDNFR---LQ-RLHINGVNVCSIDLASRRTLSDINVAPC-KHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMK 160 (226)
Q Consensus 86 ~l~~c~~---l~-~~~~~~~~L~~L~~~~~~~~~~~~~~~~-~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~ 160 (226)
++++|.- +. ......++|++|++.+.... ...+... ++|++|++++|.++. .+..+. .+++|+.|+++++ .
T Consensus 409 ~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~~L~~L~L~~N~l~~-ip~~~~-~l~~L~~L~L~~N-~ 484 (562)
T 3a79_B 409 DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT-GSVFRCLPPKVKVLDLHNNRIMS-IPKDVT-HLQALQELNVASN-Q 484 (562)
T ss_dssp ECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCC-GGGGSSCCTTCSEEECCSSCCCC-CCTTTT-SSCCCSEEECCSS-C
T ss_pred ECCCCcCCCccChhhhcCcccCCEEECCCCCCC-cchhhhhcCcCCEEECCCCcCcc-cChhhc-CCCCCCEEECCCC-C
Confidence 7777641 11 11223567777774442110 1112222 577888888777763 222333 6777888887774 3
Q ss_pred ceeeccC----ccccceeEEcc
Q 040388 161 LRSAKIS----SRCLKKLFFKG 178 (226)
Q Consensus 161 L~~l~i~----~~~L~~L~l~~ 178 (226)
++.+... .++|+.+++.+
T Consensus 485 l~~l~~~~~~~l~~L~~L~l~~ 506 (562)
T 3a79_B 485 LKSVPDGVFDRLTSLQYIWLHD 506 (562)
T ss_dssp CCCCCTTSTTTCTTCCCEECCS
T ss_pred CCCCCHHHHhcCCCCCEEEecC
Confidence 4444321 24566666665
No 102
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.85 E-value=1.3e-08 Score=88.92 Aligned_cols=60 Identities=13% Similarity=0.241 Sum_probs=40.9
Q ss_pred CCccccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeecc
Q 040388 3 LPQVAFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDC 68 (226)
Q Consensus 3 lP~~~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 68 (226)
+| .+..+++|++|++++|.+...+. ..++|++|+++++.++. +.. +.++++|++|++++|
T Consensus 146 lp-~~~~l~~L~~L~l~~N~l~~lp~--~~~~L~~L~L~~n~l~~--l~~-~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 146 LP-ELQNSSFLKIIDVDNNSLKKLPD--LPPSLEFIAAGNNQLEE--LPE-LQNLPFLTAIYADNN 205 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSS
T ss_pred Cc-ccCCCCCCCEEECCCCcCcccCC--CcccccEEECcCCcCCc--Ccc-ccCCCCCCEEECCCC
Confidence 56 46678889999999887763222 34688888888877633 222 566777777777766
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.84 E-value=4.8e-09 Score=83.34 Aligned_cols=39 Identities=15% Similarity=0.059 Sum_probs=24.3
Q ss_pred ccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEecccc
Q 040388 119 VAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCC 158 (226)
Q Consensus 119 ~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C 158 (226)
+..+++|++|++++|.++... ...+..+++|+.|++.+.
T Consensus 131 ~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 131 IERLTHLTHLALDQNQLKSIP-HGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp GGGCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECTTS
T ss_pred cccCCCCCEEECCCCcCCccC-HHHHhCCCCCCEEEeeCC
Confidence 456667777777777765432 233456677777777653
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.84 E-value=4.6e-09 Score=81.89 Aligned_cols=126 Identities=21% Similarity=0.222 Sum_probs=62.5
Q ss_pred CCccEEEeccccccccc-C-ccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe---cCCCCCcceE
Q 040388 11 ESIVVLELQFCKLESLR-N-NVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---LPDLNNLKEF 85 (226)
Q Consensus 11 ~sL~~L~L~~c~~~~~~-~-~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---i~~~~~Lk~L 85 (226)
++|++|++++|.+...+ . ...+++|++|+++++.++. .....+.++++|++|++++|. +..+. +.++++|+.|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc-cChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCCEE
Confidence 35666666666654221 1 2345666666666665521 011123455666666666552 22211 2344555555
Q ss_pred EeccCCCceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEecccc
Q 040388 86 KAYDNFRLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCC 158 (226)
Q Consensus 86 ~l~~c~~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C 158 (226)
+++++. +.. .....+..+++|++|++++|.+++.. ...+..+++|+.|++.++
T Consensus 106 ~L~~N~-l~~------------------~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 106 ALNTNQ-LQS------------------LPDGVFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp ECCSSC-CCC------------------CCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSC
T ss_pred EcCCCc-Ccc------------------cCHhHhccCCcCCEEECCCCccceeC-HHHhccCCCccEEEecCC
Confidence 555442 111 01112345667777777777665422 233455667777777664
No 105
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.83 E-value=1.5e-09 Score=90.79 Aligned_cols=169 Identities=13% Similarity=0.146 Sum_probs=112.2
Q ss_pred CccccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccC--------------
Q 040388 4 PQVAFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCG-------------- 69 (226)
Q Consensus 4 P~~~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~-------------- 69 (226)
|..+..+++|++|++++|.+...+... +++|++|+++++.++.- ....+.++++|+.|+++++.
T Consensus 95 ~~~~~~l~~L~~L~L~~n~l~~l~~~~-~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 172 (332)
T 2ft3_A 95 EKAFSPLRKLQKLYISKNHLVEIPPNL-PSSLVELRIHDNRIRKV-PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172 (332)
T ss_dssp GGGSTTCTTCCEEECCSSCCCSCCSSC-CTTCCEEECCSSCCCCC-CSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC
T ss_pred HhHhhCcCCCCEEECCCCcCCccCccc-cccCCEEECCCCccCcc-CHhHhCCCccCCEEECCCCccccCCCCcccccCC
Confidence 556677899999999999876433322 38999999999877321 12235778899999988763
Q ss_pred CceEEecCC----------CCCcceEEeccCCCceEEE----EecceeeEEEeCCC--CccccccccCcccCcEEEeecc
Q 040388 70 GLKCLELPD----------LNNLKEFKAYDNFRLQRLH----INGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGL 133 (226)
Q Consensus 70 ~l~~l~i~~----------~~~Lk~L~l~~c~~l~~~~----~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~ 133 (226)
.++.+++++ .++|++|++++|. +..+. ...++|++|++.+. .......+..+++|++|++++|
T Consensus 173 ~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 251 (332)
T 2ft3_A 173 KLNYLRISEAKLTGIPKDLPETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN 251 (332)
T ss_dssp CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSC-CCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS
T ss_pred ccCEEECcCCCCCccCccccCCCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC
Confidence 233333332 2578889988874 22221 14578999885543 2222224678899999999999
Q ss_pred ccCchhHHHHHhcCCCCcEEeccccccceeeccC----------ccccceeEEcc
Q 040388 134 YIIDECPSNQVSKLQFLEYLHIDCCMKLRSAKIS----------SRCLKKLFFKG 178 (226)
Q Consensus 134 ~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~i~----------~~~L~~L~l~~ 178 (226)
.++.- + ..+..+++|+.|+++++ .++.+... ...|+.+.+.+
T Consensus 252 ~l~~l-p-~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~ 303 (332)
T 2ft3_A 252 KLSRV-P-AGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFN 303 (332)
T ss_dssp CCCBC-C-TTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCS
T ss_pred cCeec-C-hhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeec
Confidence 98742 2 33578999999999985 34444211 24577888776
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.82 E-value=8.9e-09 Score=81.31 Aligned_cols=39 Identities=15% Similarity=0.150 Sum_probs=22.7
Q ss_pred ccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEecccc
Q 040388 119 VAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCC 158 (226)
Q Consensus 119 ~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C 158 (226)
+..+++|++|++++|.++... ...+..+++|+.|++.+.
T Consensus 124 ~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 124 FQDLHNLNLLSLYDNKLQTIA-KGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp TTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSS
T ss_pred cCCCCCCCEEECCCCcCCEEC-HHHHhCCCCCCEEEeCCC
Confidence 455666777777777665432 122345666666666653
No 107
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.79 E-value=5e-09 Score=78.91 Aligned_cols=118 Identities=17% Similarity=0.095 Sum_probs=84.8
Q ss_pred CCCccccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE----ecC
Q 040388 2 NLPQVAFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL----ELP 77 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l----~i~ 77 (226)
.+|..+..+++|++|++++|.+........+++|++|+|++|.+++. +.....++|+|+.|++++|. +..+ .+.
T Consensus 40 ~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~ 117 (168)
T 2ell_A 40 KIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLNLSGNK-LKDISTLEPLK 117 (168)
T ss_dssp BCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEECBSSS-CCSSGGGGGGS
T ss_pred hHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEeccCCc-cCcchhHHHHh
Confidence 46777778999999999999976444455799999999999998443 45567779999999999983 3322 345
Q ss_pred CCCCcceEEeccCCCceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCc
Q 040388 78 DLNNLKEFKAYDNFRLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIID 137 (226)
Q Consensus 78 ~~~~Lk~L~l~~c~~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~ 137 (226)
++++|+.|++++|. +..+ + ......+..+++|++|++++|.+++
T Consensus 118 ~l~~L~~L~l~~N~-l~~~----~-----------~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 118 KLECLKSLDLFNCE-VTNL----N-----------DYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp SCSCCCEEECCSSG-GGTS----T-----------THHHHHHTTCSSCCEETTEETTSCB
T ss_pred cCCCCCEEEeeCCc-Ccch----H-----------HHHHHHHHhCccCcEecCCCCChhh
Confidence 67888888888773 2110 0 0000135678889999998887644
No 108
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.77 E-value=1e-08 Score=84.85 Aligned_cols=146 Identities=14% Similarity=0.065 Sum_probs=100.0
Q ss_pred ccccCCccEEEecccccccc--cCccCCCcccEEEecceecCH-HHHHHH--HhcCCccceeeeeccCCceEEe------
Q 040388 7 AFNAESIVVLELQFCKLESL--RNNVTLSSLRKLCSSHVYEDD-QVIEDF--VAGCPLIEYMHVFDCGGLKCLE------ 75 (226)
Q Consensus 7 ~~~~~sL~~L~L~~c~~~~~--~~~~~l~sLk~L~L~~~~~~~-~~l~~l--~~~cp~Le~L~l~~c~~l~~l~------ 75 (226)
+..+++|++|++++|.+... .....+++|++|+|++|.+.. ..+..- ...+|+|++|++++|. ++.+.
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l 219 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAAL 219 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHH
T ss_pred hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHH
Confidence 34688999999999998632 233479999999999998743 333222 3578999999999983 32221
Q ss_pred cCCCCCcceEEeccCCCceEE----EEec---ceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCC
Q 040388 76 LPDLNNLKEFKAYDNFRLQRL----HING---VNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQ 148 (226)
Q Consensus 76 i~~~~~Lk~L~l~~c~~l~~~----~~~~---~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~ 148 (226)
+.++++|++|++++|. +... ...+ ++|++|++.+.... .+...-+++|++|++++|.++... ....++
T Consensus 220 ~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~L~~L~Ls~N~l~~~~---~~~~l~ 294 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLPAKLRVLDLSSNRLNRAP---QPDELP 294 (310)
T ss_dssp HHHTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCCSCCSCEECCSCCCCSCC---CTTSCC
T ss_pred HhcCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhcCCCCEEECCCCcCCCCc---hhhhCC
Confidence 2456899999999985 2221 1122 79999996543111 111122479999999999998631 146789
Q ss_pred CCcEEecccc
Q 040388 149 FLEYLHIDCC 158 (226)
Q Consensus 149 ~Le~L~l~~C 158 (226)
+|+.|++++.
T Consensus 295 ~L~~L~L~~N 304 (310)
T 4glp_A 295 EVDNLTLDGN 304 (310)
T ss_dssp CCSCEECSST
T ss_pred CccEEECcCC
Confidence 9999999874
No 109
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.77 E-value=4e-09 Score=88.95 Aligned_cols=88 Identities=15% Similarity=0.187 Sum_probs=63.7
Q ss_pred CCCccccccCCccEEEeccccccccc-C-ccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe---c
Q 040388 2 NLPQVAFNAESIVVLELQFCKLESLR-N-NVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---L 76 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~c~~~~~~-~-~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---i 76 (226)
.+|..+. +++++|+|++|.+...+ . ..++++|++|+|+++.+.+..-...+.+++++.++...++.++..+. +
T Consensus 23 ~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f 100 (350)
T 4ay9_X 23 EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF 100 (350)
T ss_dssp SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSB
T ss_pred ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhh
Confidence 3676653 58999999999987432 2 45799999999999876221111235677888887777777777763 4
Q ss_pred CCCCCcceEEeccCC
Q 040388 77 PDLNNLKEFKAYDNF 91 (226)
Q Consensus 77 ~~~~~Lk~L~l~~c~ 91 (226)
.++++|++++++++.
T Consensus 101 ~~l~~L~~L~l~~n~ 115 (350)
T 4ay9_X 101 QNLPNLQYLLISNTG 115 (350)
T ss_dssp CCCTTCCEEEEEEEC
T ss_pred hhccccccccccccc
Confidence 668899999998874
No 110
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.76 E-value=5.3e-09 Score=88.53 Aligned_cols=169 Identities=15% Similarity=0.040 Sum_probs=101.6
Q ss_pred ccccC-CccEEEecccccccc-c-CccC-----CCcccEEEecceecC---HHHHHHHHhcC-CccceeeeeccCCceEE
Q 040388 7 AFNAE-SIVVLELQFCKLESL-R-NNVT-----LSSLRKLCSSHVYED---DQVIEDFVAGC-PLIEYMHVFDCGGLKCL 74 (226)
Q Consensus 7 ~~~~~-sL~~L~L~~c~~~~~-~-~~~~-----l~sLk~L~L~~~~~~---~~~l~~l~~~c-p~Le~L~l~~c~~l~~l 74 (226)
+..++ +|++|+|++|.+... + .... +++|++|+|++|.++ ...+...+..+ +.|++|++++|.- ...
T Consensus 46 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~ 124 (362)
T 3goz_A 46 FANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF-SSK 124 (362)
T ss_dssp HHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG-GGS
T ss_pred HHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcC-CcH
Confidence 34566 899999999987631 1 1112 389999999999984 34555666666 8999999998842 111
Q ss_pred e-------cCC-CCCcceEEeccCCCce-----EEE---Eec-ceeeEEEeCCCC--cccc----ccccCc-ccCcEEEe
Q 040388 75 E-------LPD-LNNLKEFKAYDNFRLQ-----RLH---ING-VNVCSIDLASRR--TLSD----INVAPC-KHLEKLKL 130 (226)
Q Consensus 75 ~-------i~~-~~~Lk~L~l~~c~~l~-----~~~---~~~-~~L~~L~~~~~~--~~~~----~~~~~~-~~L~~L~L 130 (226)
. +.. +.+|++|++++|. +. .+. ... ++|++|++.+.. .... ..+..+ ++|++|++
T Consensus 125 ~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L 203 (362)
T 3goz_A 125 SSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDL 203 (362)
T ss_dssp CHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred HHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEEC
Confidence 0 222 3588888888874 22 110 112 378888855431 1100 012334 48888888
Q ss_pred eccccCchhHH----HHHhcCCCCcEEeccccccceeec--------cCccccceeEEcc
Q 040388 131 SGLYIIDECPS----NQVSKLQFLEYLHIDCCMKLRSAK--------ISSRCLKKLFFKG 178 (226)
Q Consensus 131 ~~~~it~~~~~----~l~~~~~~Le~L~l~~C~~L~~l~--------i~~~~L~~L~l~~ 178 (226)
++|.+++.... .+....++|+.|+++++. +.... -...+|+.|++.+
T Consensus 204 s~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~ 262 (362)
T 3goz_A 204 SANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDY 262 (362)
T ss_dssp TTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEH
T ss_pred CCCCCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEecc
Confidence 88887764332 222224588888888752 22221 1225688888765
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.76 E-value=5.4e-09 Score=82.56 Aligned_cols=141 Identities=11% Similarity=0.068 Sum_probs=72.7
Q ss_pred cEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE---ecCCCCCcceEEeccC
Q 040388 14 VVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL---ELPDLNNLKEFKAYDN 90 (226)
Q Consensus 14 ~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l---~i~~~~~Lk~L~l~~c 90 (226)
++++++++.+...+.. -.+.+++|+|+++.++.-.....+.++++|+.|+++++. +..+ .+.++++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCC
Confidence 4666666665432221 134566777777665322111224566777777776653 3333 2445666777777666
Q ss_pred CCceEEE----EecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEecccc
Q 040388 91 FRLQRLH----INGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCC 158 (226)
Q Consensus 91 ~~l~~~~----~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C 158 (226)
. +..+. ...++|++|++.+. .......+..+++|++|++++|.++...+ ..+..+++|+.|++.++
T Consensus 92 ~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 92 R-LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP-GAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp C-CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT-TTTTTCTTCCEEECCSC
T ss_pred c-cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH-HHhcCCCCCCEEEecCc
Confidence 3 22111 12345555553321 11112234566677777777776655322 23355667777776653
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.67 E-value=5.8e-08 Score=82.15 Aligned_cols=149 Identities=19% Similarity=0.178 Sum_probs=96.8
Q ss_pred CCccccccCCccEEEecccccccc-cC-cc-CCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE---ec
Q 040388 3 LPQVAFNAESIVVLELQFCKLESL-RN-NV-TLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL---EL 76 (226)
Q Consensus 3 lP~~~~~~~sL~~L~L~~c~~~~~-~~-~~-~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l---~i 76 (226)
+|..+. +.+++|+|++|.+... +. .. .+++|++|+|+++.++.-. ...+.++++|++|+++++. +..+ .+
T Consensus 33 iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~ 108 (361)
T 2xot_A 33 VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLSSNH-LHTLDEFLF 108 (361)
T ss_dssp CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-CCEECTTTT
T ss_pred cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC-hhhccCCCCCCEEECCCCc-CCcCCHHHh
Confidence 565544 4588999999987633 22 23 7899999999998873211 1235678999999999874 4444 24
Q ss_pred CCCCCcceEEeccCCCceEEE----EecceeeEEEeCCC--Cccccccc---cCcccCcEEEeeccccCchhHHHHHhcC
Q 040388 77 PDLNNLKEFKAYDNFRLQRLH----INGVNVCSIDLASR--RTLSDINV---APCKHLEKLKLSGLYIIDECPSNQVSKL 147 (226)
Q Consensus 77 ~~~~~Lk~L~l~~c~~l~~~~----~~~~~L~~L~~~~~--~~~~~~~~---~~~~~L~~L~L~~~~it~~~~~~l~~~~ 147 (226)
.++++|+.|++++|. +..+. ...++|++|++.+. .......+ ..+++|++|++++|.++.... ..+..+
T Consensus 109 ~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l 186 (361)
T 2xot_A 109 SDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL-TDLQKL 186 (361)
T ss_dssp TTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCH-HHHHHS
T ss_pred CCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCH-HHhhhc
Confidence 568899999999884 43332 13578888885443 11111112 467889999999998876432 334556
Q ss_pred CC--CcEEeccc
Q 040388 148 QF--LEYLHIDC 157 (226)
Q Consensus 148 ~~--Le~L~l~~ 157 (226)
+. ++.|++.+
T Consensus 187 ~~~~l~~l~l~~ 198 (361)
T 2xot_A 187 PAWVKNGLYLHN 198 (361)
T ss_dssp CHHHHTTEECCS
T ss_pred cHhhcceEEecC
Confidence 65 37777765
No 113
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.66 E-value=5.1e-08 Score=82.89 Aligned_cols=134 Identities=16% Similarity=0.128 Sum_probs=83.3
Q ss_pred ccccCCccEEEecccc-cccccCccCCCcccEEEecceecCHHHHHHHH-hcCCccceeeeeccCC-------ce----E
Q 040388 7 AFNAESIVVLELQFCK-LESLRNNVTLSSLRKLCSSHVYEDDQVIEDFV-AGCPLIEYMHVFDCGG-------LK----C 73 (226)
Q Consensus 7 ~~~~~sL~~L~L~~c~-~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~-~~cp~Le~L~l~~c~~-------l~----~ 73 (226)
+-.+++|+.|+|++|. ... +. ...++|+.|.|..+.++++.+..+. ..+|+|++|+|+.+.+ ++ .
T Consensus 168 l~~~P~L~~L~L~g~~~l~l-~~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLSI-GK-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp HHTCTTCCEEEEECCBTCBC-CS-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred HhcCCCCcEEEEeCCCCcee-cc-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 3456788888888873 322 12 3478888888888888777777765 3688899988863211 11 1
Q ss_pred EecCCCCCcceEEeccCCCceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHHH---hcCCCC
Q 040388 74 LELPDLNNLKEFKAYDNFRLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQV---SKLQFL 150 (226)
Q Consensus 74 l~i~~~~~Lk~L~l~~c~~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~---~~~~~L 150 (226)
+....+|+|+.|.+.+|..-... + ........+++|++|++++|.+++.....+. ..+++|
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~---~-------------~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L 309 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVV---V-------------EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHL 309 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHH---H-------------HHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTC
T ss_pred HhcCCCCCcCEEeCCCCCCchHH---H-------------HHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcc
Confidence 12234677777777766311000 0 0001123467888888888888776544433 457888
Q ss_pred cEEecccc
Q 040388 151 EYLHIDCC 158 (226)
Q Consensus 151 e~L~l~~C 158 (226)
+.|+++.|
T Consensus 310 ~~L~L~~n 317 (362)
T 2ra8_A 310 KFINMKYN 317 (362)
T ss_dssp SEEECCSB
T ss_pred eEEECCCC
Confidence 88888776
No 114
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.66 E-value=4.4e-10 Score=87.28 Aligned_cols=36 Identities=28% Similarity=0.347 Sum_probs=21.2
Q ss_pred ccCcccCcEEEeeccccCchh---------HHHHHhcCCCCcEEe
Q 040388 119 VAPCKHLEKLKLSGLYIIDEC---------PSNQVSKLQFLEYLH 154 (226)
Q Consensus 119 ~~~~~~L~~L~L~~~~it~~~---------~~~l~~~~~~Le~L~ 154 (226)
+..+++|++|++++|.+++.. ....+..+++|+.|+
T Consensus 136 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 136 LAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred HhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 455667777777777654331 123455667777765
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.66 E-value=2e-08 Score=90.25 Aligned_cols=168 Identities=18% Similarity=0.120 Sum_probs=98.0
Q ss_pred CCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe-cCCCCCcceEEecc
Q 040388 11 ESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE-LPDLNNLKEFKAYD 89 (226)
Q Consensus 11 ~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~-i~~~~~Lk~L~l~~ 89 (226)
.+|++|++++|.+...+... +++|++|+|++|.++. +. ..+++|+.|++++|. +..+. +. .+|+.|++++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~-l~~ip~l~--~~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALIS--LP---ELPASLEYLDACDNR-LSTLPELP--ASLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSC-CSCCCCCC--TTCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCC-CCCcchhh--cCCCEEECCC
Confidence 37888888888876433322 5788888888887741 22 457888888888772 22221 22 3788888887
Q ss_pred CCCceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccceeeccCcc
Q 040388 90 NFRLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAKISSR 169 (226)
Q Consensus 90 c~~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~i~~~ 169 (226)
|. +..+....++|++|++.+.... .+. ..+++|++|++++|.++.. .. +. ++|+.|+++++ .++.++.-..
T Consensus 130 N~-l~~lp~~l~~L~~L~Ls~N~l~-~lp-~~l~~L~~L~Ls~N~L~~l--p~-l~--~~L~~L~Ls~N-~L~~lp~~~~ 200 (571)
T 3cvr_A 130 NQ-LTMLPELPALLEYINADNNQLT-MLP-ELPTSLEVLSVRNNQLTFL--PE-LP--ESLEALDVSTN-LLESLPAVPV 200 (571)
T ss_dssp SC-CSCCCCCCTTCCEEECCSSCCS-CCC-CCCTTCCEEECCSSCCSCC--CC-CC--TTCCEEECCSS-CCSSCCCCC-
T ss_pred Cc-CCCCCCcCccccEEeCCCCccC-cCC-CcCCCcCEEECCCCCCCCc--ch-hh--CCCCEEECcCC-CCCchhhHHH
Confidence 74 2222115677888875443100 011 1456788888888877652 22 22 77888888775 3333322112
Q ss_pred cc-------ceeEEcc-eE------EEeCCCcceEEEeecc
Q 040388 170 CL-------KKLFFKG-EF------MLDTSNLSTFEYQGNL 196 (226)
Q Consensus 170 ~L-------~~L~l~~-~~------~i~~p~L~sl~~~g~~ 196 (226)
+| +.|++.+ .+ ....|+|+.+...++.
T Consensus 201 ~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 201 RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp -------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCc
Confidence 45 6677665 11 1235677777777663
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.65 E-value=3.1e-08 Score=89.05 Aligned_cols=155 Identities=17% Similarity=0.090 Sum_probs=105.6
Q ss_pred CCccccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEecCCCCCc
Q 040388 3 LPQVAFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLELPDLNNL 82 (226)
Q Consensus 3 lP~~~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~i~~~~~L 82 (226)
+|..++ ++|++|+|++|.+...+ ..+++|++|+|++|.++. +.. +. .+|+.|++++|. +..+.- .+++|
T Consensus 74 lp~~l~--~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--ip~-l~--~~L~~L~Ls~N~-l~~lp~-~l~~L 142 (571)
T 3cvr_A 74 LPDNLP--PQITVLEITQNALISLP--ELPASLEYLDACDNRLST--LPE-LP--ASLKHLDVDNNQ-LTMLPE-LPALL 142 (571)
T ss_dssp CCSCCC--TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CCC-CC--TTCCEEECCSSC-CSCCCC-CCTTC
T ss_pred cCHhHc--CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--cch-hh--cCCCEEECCCCc-CCCCCC-cCccc
Confidence 676664 78999999999987544 458999999999998743 333 22 289999999873 332322 57899
Q ss_pred ceEEeccCCCceEEEEecceeeEEEeCCC-CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCC-------cEEe
Q 040388 83 KEFKAYDNFRLQRLHINGVNVCSIDLASR-RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFL-------EYLH 154 (226)
Q Consensus 83 k~L~l~~c~~l~~~~~~~~~L~~L~~~~~-~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~L-------e~L~ 154 (226)
+.|++++|. +..+....++|++|++.+. ....+. +. ++|++|++++|.++.- + .+ . ++| +.|+
T Consensus 143 ~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~l-p-~~-~--~~L~~~~~~L~~L~ 213 (571)
T 3cvr_A 143 EYINADNNQ-LTMLPELPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESL-P-AV-P--VRNHHSEETEIFFR 213 (571)
T ss_dssp CEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSC-C-CC-C----------CCEEEE
T ss_pred cEEeCCCCc-cCcCCCcCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCch-h-hH-H--HhhhcccccceEEe
Confidence 999999985 3333335689999996543 111111 32 8999999999998742 2 21 2 256 9999
Q ss_pred ccccccceeecc---CccccceeEEcc
Q 040388 155 IDCCMKLRSAKI---SSRCLKKLFFKG 178 (226)
Q Consensus 155 l~~C~~L~~l~i---~~~~L~~L~l~~ 178 (226)
++++ .++.++- ..++|+.|++.+
T Consensus 214 Ls~N-~l~~lp~~l~~l~~L~~L~L~~ 239 (571)
T 3cvr_A 214 CREN-RITHIPENILSLDPTCTIILED 239 (571)
T ss_dssp CCSS-CCCCCCGGGGGSCTTEEEECCS
T ss_pred cCCC-cceecCHHHhcCCCCCEEEeeC
Confidence 9985 4454432 235788888876
No 117
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.63 E-value=3.2e-09 Score=90.59 Aligned_cols=148 Identities=14% Similarity=0.057 Sum_probs=99.6
Q ss_pred cCCccEEEecccccccc-----cCc--cCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCC----ceEE--ec
Q 040388 10 AESIVVLELQFCKLESL-----RNN--VTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGG----LKCL--EL 76 (226)
Q Consensus 10 ~~sL~~L~L~~c~~~~~-----~~~--~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~----l~~l--~i 76 (226)
.++|++|+|++|.+... ... ...++|++|+|++|.+++..+..+...+++|++|++++|.- ...+ .+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 36799999999987521 111 13479999999999998888888888888999999998832 1111 01
Q ss_pred -CCCCCcceEEeccCCCceE-----E---EEecceeeEEEeCCCC-cc-----ccccccCcccCcEEEeeccccCchhHH
Q 040388 77 -PDLNNLKEFKAYDNFRLQR-----L---HINGVNVCSIDLASRR-TL-----SDINVAPCKHLEKLKLSGLYIIDECPS 141 (226)
Q Consensus 77 -~~~~~Lk~L~l~~c~~l~~-----~---~~~~~~L~~L~~~~~~-~~-----~~~~~~~~~~L~~L~L~~~~it~~~~~ 141 (226)
..+++|++|++++|. +.+ + ....++|++|++.+.. .. ....+..+++|++|++++|.+++....
T Consensus 151 ~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 235789999999985 221 1 0135778888855431 10 011234566888899988888876543
Q ss_pred H---HHhcCCCCcEEecccc
Q 040388 142 N---QVSKLQFLEYLHIDCC 158 (226)
Q Consensus 142 ~---l~~~~~~Le~L~l~~C 158 (226)
. .+..+++|+.|++++|
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTS
T ss_pred HHHHHHHhCCCCCEEeccCC
Confidence 3 3446688888888876
No 118
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.62 E-value=5.5e-09 Score=79.75 Aligned_cols=90 Identities=11% Similarity=0.146 Sum_probs=51.0
Q ss_pred CcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe---cCCCCCcceEEeccCCCceEEEEecceeeEEEeC
Q 040388 33 SSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---LPDLNNLKEFKAYDNFRLQRLHINGVNVCSIDLA 109 (226)
Q Consensus 33 ~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---i~~~~~Lk~L~l~~c~~l~~~~~~~~~L~~L~~~ 109 (226)
..|+.|++++|.+++.++..+ .+|++|++|++++|..+..-. ++..+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~----------------------------- 110 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLE----------------------------- 110 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCH-----------------------------
T ss_pred ceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcc-----------------------------
Confidence 357777777777777666664 566666666666665432210 11100
Q ss_pred CCCccccccccCcccCcEEEeeccc-cCchhHHHHHhcCCCCcEEecccccccee
Q 040388 110 SRRTLSDINVAPCKHLEKLKLSGLY-IIDECPSNQVSKLQFLEYLHIDCCMKLRS 163 (226)
Q Consensus 110 ~~~~~~~~~~~~~~~L~~L~L~~~~-it~~~~~~l~~~~~~Le~L~l~~C~~L~~ 163 (226)
..+++|++|++++|. ||+..+..+ ..+++|+.|++.+|+.++.
T Consensus 111 ----------~~~~~L~~L~Ls~C~~ITD~Gl~~L-~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 111 ----------NLQKSMLEMEIISCGNVTDKGIIAL-HHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp ----------HHHHHCCEEEEESCTTCCHHHHHHG-GGCTTCCEEEEESCTTCCC
T ss_pred ----------cccCCCCEEEcCCCCcCCHHHHHHH-hcCCCCCEEECCCCCCCCc
Confidence 013456666666653 666665554 3566666666666665554
No 119
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.61 E-value=7.3e-09 Score=76.44 Aligned_cols=88 Identities=24% Similarity=0.264 Sum_probs=69.3
Q ss_pred CCCccccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE----ecC
Q 040388 2 NLPQVAFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL----ELP 77 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l----~i~ 77 (226)
.+|..+..+++|++|++++|.+........+++|++|+++++.+++. +.....++++|+.|++++|. +..+ .+.
T Consensus 33 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~ 110 (149)
T 2je0_A 33 KLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLK 110 (149)
T ss_dssp BCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEECTTSC-CCSHHHHGGGG
T ss_pred HHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEECCCCc-CCChHHHHHHh
Confidence 46777778999999999999886444455799999999999998543 55667789999999999984 2221 356
Q ss_pred CCCCcceEEeccCC
Q 040388 78 DLNNLKEFKAYDNF 91 (226)
Q Consensus 78 ~~~~Lk~L~l~~c~ 91 (226)
++++|++|++++|.
T Consensus 111 ~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 111 KLENLKSLDLFNCE 124 (149)
T ss_dssp GCTTCCEEECTTCG
T ss_pred hCCCCCEEeCcCCc
Confidence 67889999998873
No 120
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.59 E-value=5.4e-08 Score=75.72 Aligned_cols=158 Identities=14% Similarity=0.054 Sum_probs=104.4
Q ss_pred cEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe---cCCCCCcceEEeccC
Q 040388 14 VVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---LPDLNNLKEFKAYDN 90 (226)
Q Consensus 14 ~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---i~~~~~Lk~L~l~~c 90 (226)
+.++.+++.+...+.. -.++|++|+++++.++. .....+.++++|++|+++++ .++.+. +.++++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~-~~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTG-IPAQTTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCCCC-CCCCCcEEEcCCCccCc-CChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC
Confidence 4566666665432222 35789999999998742 11233578899999999887 333332 345778888888876
Q ss_pred CCceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccceeecc---C
Q 040388 91 FRLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAKI---S 167 (226)
Q Consensus 91 ~~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~i---~ 167 (226)
. +.. .....+..+++|++|++++|.++... ...+..+++|+.|++.++ .++.+.- .
T Consensus 87 ~-l~~------------------~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~ 145 (208)
T 2o6s_A 87 Q-LQS------------------LPNGVFDKLTQLKELALNTNQLQSLP-DGVFDKLTQLKDLRLYQN-QLKSVPDGVFD 145 (208)
T ss_dssp C-CCC------------------CCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS-CCSCCCTTTTT
T ss_pred c-CCc------------------cCHhHhcCccCCCEEEcCCCcCcccC-HhHhccCCcCCEEECCCC-ccceeCHHHhc
Confidence 3 221 01123567889999999999987542 344578899999999986 3443332 2
Q ss_pred -ccccceeEEcc-eEEEeCCCcceEEEeec
Q 040388 168 -SRCLKKLFFKG-EFMLDTSNLSTFEYQGN 195 (226)
Q Consensus 168 -~~~L~~L~l~~-~~~i~~p~L~sl~~~g~ 195 (226)
..+|+.|++.+ .+.-++|+|+.+...++
T Consensus 146 ~l~~L~~L~l~~N~~~~~~~~l~~L~~~~n 175 (208)
T 2o6s_A 146 RLTSLQYIWLHDNPWDCTCPGIRYLSEWIN 175 (208)
T ss_dssp TCTTCCEEECCSCCBCCCTTTTHHHHHHHH
T ss_pred cCCCccEEEecCCCeecCCCCHHHHHHHHH
Confidence 35788898887 45566788877654443
No 121
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.57 E-value=3.6e-08 Score=88.45 Aligned_cols=99 Identities=18% Similarity=0.121 Sum_probs=52.7
Q ss_pred CCCCcceEEeccCCCceEE----EEecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCc
Q 040388 78 DLNNLKEFKAYDNFRLQRL----HINGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLE 151 (226)
Q Consensus 78 ~~~~Lk~L~l~~c~~l~~~----~~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le 151 (226)
++++|+.+++++|.....+ ....++|++|++.+. ....+..+.++++|++|++++|.++.... ..+..+++|+
T Consensus 467 ~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~ 545 (635)
T 4g8a_A 467 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT-FPYKCLNSLQ 545 (635)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCC-GGGTTCTTCC
T ss_pred cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCCh-hHHhCCCCCC
Confidence 3466677777666422211 123466777774432 11122345667777777777777655321 2345667777
Q ss_pred EEeccccccceeecc---C--ccccceeEEcc
Q 040388 152 YLHIDCCMKLRSAKI---S--SRCLKKLFFKG 178 (226)
Q Consensus 152 ~L~l~~C~~L~~l~i---~--~~~L~~L~l~~ 178 (226)
.|+++++ .++.+.. . ..+|+.|++.+
T Consensus 546 ~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 546 VLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp EEECTTS-CCCBCCSSCTTCCCTTCCEEECTT
T ss_pred EEECCCC-cCCCCCHHHHHhhhCcCCEEEeeC
Confidence 7777764 2332221 1 13566777665
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.55 E-value=9.4e-08 Score=85.88 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=18.3
Q ss_pred ccCcccCcEEEeeccccCch--hHHHHHhcCCCCcEEe
Q 040388 119 VAPCKHLEKLKLSGLYIIDE--CPSNQVSKLQFLEYLH 154 (226)
Q Consensus 119 ~~~~~~L~~L~L~~~~it~~--~~~~l~~~~~~Le~L~ 154 (226)
+..+++|+.|++++|.++.. ....+...+|+|+.|+
T Consensus 529 l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 529 LVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp GGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred HhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 44556666666666655432 1123334455665553
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.53 E-value=3e-07 Score=76.68 Aligned_cols=86 Identities=15% Similarity=0.177 Sum_probs=50.7
Q ss_pred cccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccceeecc----Cccccc-eeEEcce---E----EEeCCCcce
Q 040388 122 CKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAKI----SSRCLK-KLFFKGE---F----MLDTSNLST 189 (226)
Q Consensus 122 ~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~i----~~~~L~-~L~l~~~---~----~i~~p~L~s 189 (226)
|++|+++++.++.++.- ....+.+|++|+.+++.+. ++.+.- .+.+|+ .+.+... + -.++++|++
T Consensus 225 ~~~L~~l~L~~n~i~~I-~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTI-PDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEE-CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCccee-cHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcccceEEchhhhhCCccCCE
Confidence 77888888887766543 2344577788888887652 555532 224566 6766542 1 134677777
Q ss_pred EEEeecceeecc-----ccccceeee
Q 040388 190 FEYQGNLVSFSS-----NALALSQII 210 (226)
Q Consensus 190 l~~~g~~~~~~~-----~~~~l~~~~ 210 (226)
+...++.+.... +++.|+.+.
T Consensus 302 l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEeCCCccCccchhhhcCCcchhhhc
Confidence 777555432222 556666554
No 124
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.53 E-value=9e-08 Score=75.48 Aligned_cols=130 Identities=18% Similarity=0.092 Sum_probs=90.7
Q ss_pred CCccccccCCccEEEecccccccc-c--CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE---ec
Q 040388 3 LPQVAFNAESIVVLELQFCKLESL-R--NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL---EL 76 (226)
Q Consensus 3 lP~~~~~~~sL~~L~L~~c~~~~~-~--~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l---~i 76 (226)
+|..+. +.+++|++++|.+... + ....+++|++|+|+++.++.-. ...+.++++|++|+++++.- ..+ .+
T Consensus 26 iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~ 101 (220)
T 2v70_A 26 IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNRL-ENVQHKMF 101 (220)
T ss_dssp CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCC-CCCCGGGG
T ss_pred CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCcc-CccCHhHh
Confidence 565443 4578999999988643 2 2357999999999999873211 12367889999999998743 222 25
Q ss_pred CCCCCcceEEeccCCCceEE----EEecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCc
Q 040388 77 PDLNNLKEFKAYDNFRLQRL----HINGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIID 137 (226)
Q Consensus 77 ~~~~~Lk~L~l~~c~~l~~~----~~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~ 137 (226)
.++++|++|++++|. +..+ ....++|++|++.+. .......+..+++|++|++++|.++.
T Consensus 102 ~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 102 KGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp TTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred cCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 678999999999885 2222 124688999996543 22223456788999999999998754
No 125
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.51 E-value=1.4e-07 Score=79.84 Aligned_cols=145 Identities=17% Similarity=0.099 Sum_probs=99.2
Q ss_pred cEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHh-cCCccceeeeeccCCceEEe---cCCCCCcceEEecc
Q 040388 14 VVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVA-GCPLIEYMHVFDCGGLKCLE---LPDLNNLKEFKAYD 89 (226)
Q Consensus 14 ~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~-~cp~Le~L~l~~c~~l~~l~---i~~~~~Lk~L~l~~ 89 (226)
++++++++.+...+.. -.+.++.|+|+++.++.-. ...+. ++++|+.|+++++ .+..+. +.++++|+.|++++
T Consensus 21 ~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~-~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLR-AEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEEC-TTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccC-hhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCC
Confidence 5788888877644332 2467999999999874321 11233 8899999999987 444443 56789999999999
Q ss_pred CCCceEEEE----ecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHH---hcCCCCcEEecccccc
Q 040388 90 NFRLQRLHI----NGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQV---SKLQFLEYLHIDCCMK 160 (226)
Q Consensus 90 c~~l~~~~~----~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~---~~~~~Le~L~l~~C~~ 160 (226)
|. +..+.- ..++|++|++.+. .......+..+++|++|++++|.++... ...+ ..+++|+.|+++++ .
T Consensus 98 N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~~~~l~~L~~L~L~~N-~ 174 (361)
T 2xot_A 98 NH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP-VELIKDGNKLPKLMLLDLSSN-K 174 (361)
T ss_dssp SC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC-GGGTC----CTTCCEEECCSS-C
T ss_pred Cc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC-HHHhcCcccCCcCCEEECCCC-C
Confidence 84 544422 3588999996543 2112335678899999999999987632 2223 56899999999984 3
Q ss_pred ceee
Q 040388 161 LRSA 164 (226)
Q Consensus 161 L~~l 164 (226)
++.+
T Consensus 175 l~~l 178 (361)
T 2xot_A 175 LKKL 178 (361)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 4443
No 126
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.47 E-value=2.1e-07 Score=73.72 Aligned_cols=141 Identities=15% Similarity=0.110 Sum_probs=94.2
Q ss_pred ccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe---cCCCCCcceEEecc
Q 040388 13 IVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---LPDLNNLKEFKAYD 89 (226)
Q Consensus 13 L~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---i~~~~~Lk~L~l~~ 89 (226)
-+.++.+++.+...+.. -.++|++|+|+++.++.- ....+.++++|++|+++++. +..+. +.++++|+.|++++
T Consensus 21 ~~~v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAG-IPTNAQILYLHDNQITKL-EPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCC-CCCCCCEEEcCCCccCcc-CHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCC
Confidence 45677777776543332 248899999999887331 12235678889999998874 33332 35678888888887
Q ss_pred CCCceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccceeecc---
Q 040388 90 NFRLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAKI--- 166 (226)
Q Consensus 90 c~~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~i--- 166 (226)
|. +..+ ....+..+++|++|++++|.++.- + ..+..+++|+.|+++++ .++.+..
T Consensus 98 N~-l~~l------------------~~~~~~~l~~L~~L~Ls~N~l~~l-p-~~~~~l~~L~~L~L~~N-~l~~~~~~~~ 155 (229)
T 3e6j_A 98 NQ-LTVL------------------PSAVFDRLVHLKELFMCCNKLTEL-P-RGIERLTHLTHLALDQN-QLKSIPHGAF 155 (229)
T ss_dssp SC-CCCC------------------CTTTTTTCTTCCEEECCSSCCCSC-C-TTGGGCTTCSEEECCSS-CCCCCCTTTT
T ss_pred Cc-CCcc------------------ChhHhCcchhhCeEeccCCccccc-C-cccccCCCCCEEECCCC-cCCccCHHHH
Confidence 73 2211 112356788999999999998742 2 33478899999999985 4554432
Q ss_pred C-ccccceeEEcc
Q 040388 167 S-SRCLKKLFFKG 178 (226)
Q Consensus 167 ~-~~~L~~L~l~~ 178 (226)
. .++|+.|++.+
T Consensus 156 ~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 156 DRLSSLTHAYLFG 168 (229)
T ss_dssp TTCTTCCEEECTT
T ss_pred hCCCCCCEEEeeC
Confidence 2 25788888876
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.46 E-value=5.3e-07 Score=75.17 Aligned_cols=157 Identities=12% Similarity=0.094 Sum_probs=88.3
Q ss_pred cCCccEEEecccccccc--cCccCCCcccEEEecceec---CHHHHHHHHhcCCccceeeee-----------------c
Q 040388 10 AESIVVLELQFCKLESL--RNNVTLSSLRKLCSSHVYE---DDQVIEDFVAGCPLIEYMHVF-----------------D 67 (226)
Q Consensus 10 ~~sL~~L~L~~c~~~~~--~~~~~l~sLk~L~L~~~~~---~~~~l~~l~~~cp~Le~L~l~-----------------~ 67 (226)
|++|+.|.|.. .+... ..+.++++|+.|.+.++.+ .+.+ ..+|..+..+... +
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~a----F~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEA----LADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTS----SCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhh----hcCCCceEEecCcchhhhhcccccccccccc
Confidence 78999999988 55422 2345788999999987753 2222 2345555544322 2
Q ss_pred cCCce--------------------------EEecC-------------CCCCcceEEeccCCCceEEE----Eecceee
Q 040388 68 CGGLK--------------------------CLELP-------------DLNNLKEFKAYDNFRLQRLH----INGVNVC 104 (226)
Q Consensus 68 c~~l~--------------------------~l~i~-------------~~~~Lk~L~l~~c~~l~~~~----~~~~~L~ 104 (226)
|..++ .+.+. .|++|+.+++.++. ++.+. -++++|+
T Consensus 175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~ 253 (329)
T 3sb4_A 175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLL 253 (329)
T ss_dssp SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCC
T ss_pred ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCC
Confidence 22222 11111 16788888887652 43332 2356777
Q ss_pred EEEeCCC-CccccccccCcccCc-EEEeeccccCchhHHHHHhcCCCCcEEeccccccceeecc----CccccceeE
Q 040388 105 SIDLASR-RTLSDINVAPCKHLE-KLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAKI----SSRCLKKLF 175 (226)
Q Consensus 105 ~L~~~~~-~~~~~~~~~~~~~L~-~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~i----~~~~L~~L~ 175 (226)
++.+.+. .......+.+|.+|+ .+.+.. .++.-. ...+.+|++|+.+++.+ ..++.+.- .+.+|+.+.
T Consensus 254 ~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I~-~~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 254 KIKLPHNLKTIGQRVFSNCGRLAGTLELPA-SVTAIE-FGAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEEEECT-TCCEEC-TTTTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred EEECCcccceehHHHhhCChhccEEEEEcc-cceEEc-hhhhhCCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 7775432 112233467888888 888877 443321 23457888888888765 44555542 124555543
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.44 E-value=1.7e-07 Score=72.23 Aligned_cols=75 Identities=8% Similarity=0.081 Sum_probs=37.8
Q ss_pred cEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE---ecCCCCCcceEEeccC
Q 040388 14 VVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL---ELPDLNNLKEFKAYDN 90 (226)
Q Consensus 14 ~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l---~i~~~~~Lk~L~l~~c 90 (226)
++++++++.+...+... .++|+.|+++++.++.-.....+.+.++|++|+++++. +..+ .+.++++|+.|+++++
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEECCCC
Confidence 55666666554322211 33666666666655221111124556666666666652 2222 2344566666666665
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.41 E-value=5.2e-07 Score=69.50 Aligned_cols=114 Identities=18% Similarity=0.116 Sum_probs=80.8
Q ss_pred CCCccccccCCccEEEeccccccccc-C--ccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE---e
Q 040388 2 NLPQVAFNAESIVVLELQFCKLESLR-N--NVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL---E 75 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~c~~~~~~-~--~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l---~ 75 (226)
.+|..++. +|++|++++|.+...+ . ...+++|++|+|+++.++.- ....+.+.+.|++|+++++. +..+ .
T Consensus 22 ~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~ 97 (192)
T 1w8a_A 22 EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENK-IKEISNKM 97 (192)
T ss_dssp SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCC-CCEECSSS
T ss_pred cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEECCCCc-CCccCHHH
Confidence 35665554 8999999999886432 2 45799999999999987432 12236778999999999974 4333 2
Q ss_pred cCCCCCcceEEeccCCCceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCch
Q 040388 76 LPDLNNLKEFKAYDNFRLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDE 138 (226)
Q Consensus 76 i~~~~~Lk~L~l~~c~~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~ 138 (226)
+.++++|++|+++++. +..+ ....+..+++|++|++++|.++.+
T Consensus 98 ~~~l~~L~~L~L~~N~-l~~~------------------~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 98 FLGLHQLKTLNLYDNQ-ISCV------------------MPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp STTCTTCCEEECCSSC-CCEE------------------CTTSSTTCTTCCEEECTTCCBCCS
T ss_pred hcCCCCCCEEECCCCc-CCee------------------CHHHhhcCCCCCEEEeCCCCccCc
Confidence 5567889999988873 3321 112356678899999999887643
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.41 E-value=3.8e-07 Score=70.44 Aligned_cols=120 Identities=16% Similarity=0.122 Sum_probs=73.1
Q ss_pred cEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE---ecCCCCCcceEEeccC
Q 040388 14 VVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL---ELPDLNNLKEFKAYDN 90 (226)
Q Consensus 14 ~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l---~i~~~~~Lk~L~l~~c 90 (226)
++++++++.+...+.. -.++|+.|+|+++.++. +...+.++++|+.|+++++. +..+ .+.++++|++|+++++
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCC
Confidence 5778888777643332 24788999998887741 22346778888888888763 3222 2456778888888776
Q ss_pred CCceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccc
Q 040388 91 FRLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDC 157 (226)
Q Consensus 91 ~~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~ 157 (226)
. +..+ ....+..+++|++|++++|.++.. ....+..+++|+.|++.+
T Consensus 89 ~-l~~i------------------~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 89 R-LRCI------------------PPRTFDGLKSLRLLSLHGNDISVV-PEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp C-CCBC------------------CTTTTTTCTTCCEEECCSSCCCBC-CTTTTTTCTTCCEEECCS
T ss_pred c-cCEe------------------CHHHhCCCCCCCEEECCCCCCCee-ChhhhhcCccccEEEeCC
Confidence 3 2211 011244556677777776666542 122344566666666665
No 131
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.35 E-value=4e-07 Score=71.73 Aligned_cols=131 Identities=15% Similarity=0.181 Sum_probs=92.0
Q ss_pred CCCccccccCCccEEEecccccccc-c-CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe---c
Q 040388 2 NLPQVAFNAESIVVLELQFCKLESL-R-NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---L 76 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~c~~~~~-~-~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---i 76 (226)
.+|..+. ++|++|++++|.+... + ....+++|++|+|+++.++.-. ...+.++++|++|+++++. +..+. +
T Consensus 25 ~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f 100 (220)
T 2v9t_B 25 EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGNK-ITELPKSLF 100 (220)
T ss_dssp SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC-TTTTTTCSSCCEEECCSSC-CCCCCTTTT
T ss_pred cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC-HHHhhCCcCCCEEECCCCc-CCccCHhHc
Confidence 3566554 6899999999988643 2 3457899999999999873211 2236788999999999873 33332 4
Q ss_pred CCCCCcceEEeccCCCceEEE----EecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCc
Q 040388 77 PDLNNLKEFKAYDNFRLQRLH----INGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIID 137 (226)
Q Consensus 77 ~~~~~Lk~L~l~~c~~l~~~~----~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~ 137 (226)
.++++|+.|++++|. +..+. ...++|++|++.+. .......+..+++|++|++++|.++-
T Consensus 101 ~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 101 EGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 568999999999985 33221 14588999996543 22222346778999999999988643
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.34 E-value=4.2e-07 Score=68.90 Aligned_cols=109 Identities=19% Similarity=0.132 Sum_probs=75.4
Q ss_pred ccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE-ecCCCCCcceEEeccCCCceEEEEecceeeEEE
Q 040388 29 NVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL-ELPDLNNLKEFKAYDNFRLQRLHINGVNVCSID 107 (226)
Q Consensus 29 ~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l-~i~~~~~Lk~L~l~~c~~l~~~~~~~~~L~~L~ 107 (226)
...+++|+.|+++++.++. +..+...+|.|+.|++++|. +..+ .+.++++|+.|++++|. +..+.
T Consensus 15 ~~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-l~~~~---------- 80 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNR-ICRIG---------- 80 (176)
T ss_dssp EECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSC-CCEEC----------
T ss_pred cCCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCC-CCcccccccCCCCCEEECCCCc-ccccC----------
Confidence 3467899999999998742 23444555689999998873 3333 45667888888888773 33210
Q ss_pred eCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccc
Q 040388 108 LASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCM 159 (226)
Q Consensus 108 ~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~ 159 (226)
...+..+++|++|++++|.+++......+..+++|+.|++++++
T Consensus 81 --------~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 124 (176)
T 1a9n_A 81 --------EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP 124 (176)
T ss_dssp --------SCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred --------cchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC
Confidence 11235778999999999998653211245788999999999864
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.33 E-value=6.2e-07 Score=67.88 Aligned_cols=75 Identities=12% Similarity=0.023 Sum_probs=40.4
Q ss_pred ccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe---cCCCCCcceEEecc
Q 040388 13 IVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---LPDLNNLKEFKAYD 89 (226)
Q Consensus 13 L~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---i~~~~~Lk~L~l~~ 89 (226)
.+.++++++.+...+. .-.++|+.|+++++.++. .....+.++++|++|+++++ .+..+. +.++++|+.|++++
T Consensus 9 ~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccE-eCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCC
Confidence 4566666666543222 124677777777766531 11122455667777777665 222221 24456666666666
Q ss_pred C
Q 040388 90 N 90 (226)
Q Consensus 90 c 90 (226)
|
T Consensus 86 N 86 (177)
T 2o6r_A 86 N 86 (177)
T ss_dssp S
T ss_pred C
Confidence 5
No 134
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.33 E-value=1.6e-07 Score=79.82 Aligned_cols=165 Identities=14% Similarity=0.103 Sum_probs=104.4
Q ss_pred CccEEEecccccc-c---------ccCccCCCcccEEEecceecC--------HHHHHHHHhcCCccceeeeeccCCceE
Q 040388 12 SIVVLELQFCKLE-S---------LRNNVTLSSLRKLCSSHVYED--------DQVIEDFVAGCPLIEYMHVFDCGGLKC 73 (226)
Q Consensus 12 sL~~L~L~~c~~~-~---------~~~~~~l~sLk~L~L~~~~~~--------~~~l~~l~~~cp~Le~L~l~~c~~l~~ 73 (226)
+++.|.+..+... . ......+++|+.|.+..+... ...+..++..+|+|++|.+++|.++..
T Consensus 108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l 187 (362)
T 2ra8_A 108 SLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI 187 (362)
T ss_dssp GCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC
T ss_pred hcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee
Confidence 5677887765532 0 011225899999999765321 124678899999999999998854432
Q ss_pred EecCCCCCcceEEeccCCC----ceEEE-EecceeeEEEe-CC------CCcc---c-cccccCcccCcEEEeeccccCc
Q 040388 74 LELPDLNNLKEFKAYDNFR----LQRLH-INGVNVCSIDL-AS------RRTL---S-DINVAPCKHLEKLKLSGLYIID 137 (226)
Q Consensus 74 l~i~~~~~Lk~L~l~~c~~----l~~~~-~~~~~L~~L~~-~~------~~~~---~-~~~~~~~~~L~~L~L~~~~it~ 137 (226)
-.+. +++|++|.+..|.- +..+. ...|+|++|++ .+ .... . ......+++|++|.+..|.+++
T Consensus 188 ~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~ 266 (362)
T 2ra8_A 188 GKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQN 266 (362)
T ss_dssp CSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHH
T ss_pred cccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCch
Confidence 2233 58999999987741 11121 15799999984 21 1000 0 1122468999999999999877
Q ss_pred hhHHHHH--hcCCCCcEEecccccccee-----ecc---CccccceeEEcc
Q 040388 138 ECPSNQV--SKLQFLEYLHIDCCMKLRS-----AKI---SSRCLKKLFFKG 178 (226)
Q Consensus 138 ~~~~~l~--~~~~~Le~L~l~~C~~L~~-----l~i---~~~~L~~L~l~~ 178 (226)
.....+. +.+|+|+.|+++.+ .+.. +.- ..++|+.|++..
T Consensus 267 ~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~ 316 (362)
T 2ra8_A 267 VVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKY 316 (362)
T ss_dssp HHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred HHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCC
Confidence 5544443 36789999999764 3433 211 125688888764
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.31 E-value=2.9e-07 Score=85.06 Aligned_cols=104 Identities=15% Similarity=0.046 Sum_probs=56.9
Q ss_pred CCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE--ecCCCCCcceEEeccCCCceEEE---EecceeeE
Q 040388 31 TLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL--ELPDLNNLKEFKAYDNFRLQRLH---INGVNVCS 105 (226)
Q Consensus 31 ~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l--~i~~~~~Lk~L~l~~c~~l~~~~---~~~~~L~~ 105 (226)
.+++|+.|+|+++.+. .+..-+.++++|++|+|++|. +..+ .+.++++|+.|++++|. +..+. ..+++|++
T Consensus 222 ~l~~L~~L~Ls~n~l~--~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIF--NISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKY 297 (727)
T ss_dssp CCCCCCEEECTTSCCS--CCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSE
T ss_pred cCCCCcEEECCCCCCC--CCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCE
Confidence 4566666666666552 111113356666666666652 2222 23445666666666663 22211 13456666
Q ss_pred EEeCCC-CccccccccCcccCcEEEeeccccCch
Q 040388 106 IDLASR-RTLSDINVAPCKHLEKLKLSGLYIIDE 138 (226)
Q Consensus 106 L~~~~~-~~~~~~~~~~~~~L~~L~L~~~~it~~ 138 (226)
|++.+. ....+..+..+++|++|+|++|.++..
T Consensus 298 L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 298 FYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp EECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred EECCCCCCCccChhhhcCCCccEEeCCCCccCCC
Confidence 664332 112223467888999999999988764
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.28 E-value=1.2e-06 Score=66.29 Aligned_cols=113 Identities=23% Similarity=0.174 Sum_probs=77.7
Q ss_pred CCccccccCCccEEEecccccccc-cC-ccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe---cC
Q 040388 3 LPQVAFNAESIVVLELQFCKLESL-RN-NVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---LP 77 (226)
Q Consensus 3 lP~~~~~~~sL~~L~L~~c~~~~~-~~-~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---i~ 77 (226)
+|..++ ++|++|++++|.+... +. ...+++|++|+++++.++. .....+.++++|+.|+++++. +..+. +.
T Consensus 22 ~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~ 97 (177)
T 2o6r_A 22 VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS-LPDGVFDKLTKLTILYLHENK-LQSLPNGVFD 97 (177)
T ss_dssp CCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTT
T ss_pred CCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE-eChhHccCCCccCEEECCCCC-ccccCHHHhh
Confidence 454444 6899999999987643 22 3568999999999998742 112235688999999999873 33321 34
Q ss_pred CCCCcceEEeccCCCceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCch
Q 040388 78 DLNNLKEFKAYDNFRLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDE 138 (226)
Q Consensus 78 ~~~~Lk~L~l~~c~~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~ 138 (226)
++++|+.|++++|. +..+ ....+..+++|++|++++|.++..
T Consensus 98 ~l~~L~~L~l~~N~-l~~~------------------~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 98 KLTQLKELALDTNQ-LKSV------------------PDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp TCTTCCEEECCSSC-CSCC------------------CTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCcccCEEECcCCc-ceEe------------------CHHHhcCCcccCEEEecCCCeecc
Confidence 56788888888763 2211 112245678999999999988754
No 137
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.27 E-value=7.9e-07 Score=74.77 Aligned_cols=170 Identities=15% Similarity=0.105 Sum_probs=98.3
Q ss_pred CCcccc-ccCCccEEEecccccc-cc-c-CccCCCcccEE-EecceecCHHHHHHHHhcCCccceeeeeccCC-------
Q 040388 3 LPQVAF-NAESIVVLELQFCKLE-SL-R-NNVTLSSLRKL-CSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGG------- 70 (226)
Q Consensus 3 lP~~~~-~~~sL~~L~L~~c~~~-~~-~-~~~~l~sLk~L-~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~------- 70 (226)
+|...| .+++|++|+|++|.+. .. . ...++++|+.+ .++.+.+.. .....+.++++|+.|+++++.-
T Consensus 45 i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~-l~~~~f~~l~~L~~L~l~~n~l~~~~~~~ 123 (350)
T 4ay9_X 45 IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQNLPNLQYLLISNTGIKHLPDVH 123 (350)
T ss_dssp ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE-ECTTSBCCCTTCCEEEEEEECCSSCCCCT
T ss_pred cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc-cCchhhhhccccccccccccccccCCchh
Confidence 566544 6899999999999863 22 2 22456776654 444444311 0012356778888888887631
Q ss_pred ------ceEEecC--------------CC-CCcceEEeccCCCceEEEE---ecceeeEEEeCCC--Cc-cccccccCcc
Q 040388 71 ------LKCLELP--------------DL-NNLKEFKAYDNFRLQRLHI---NGVNVCSIDLASR--RT-LSDINVAPCK 123 (226)
Q Consensus 71 ------l~~l~i~--------------~~-~~Lk~L~l~~c~~l~~~~~---~~~~L~~L~~~~~--~~-~~~~~~~~~~ 123 (226)
+..+.+. ++ ..++.|+++++ .++.+.- ..++|+++.+.+. .. ...-.+..++
T Consensus 124 ~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~ 202 (350)
T 4ay9_X 124 KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGAS 202 (350)
T ss_dssp TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEE
T ss_pred hcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChhhccccchhHHhhccCCcccCCCHHHhccCc
Confidence 1122111 11 23555666655 3333321 2356677764321 11 1122357788
Q ss_pred cCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccceeeccC--ccccceeEEcc
Q 040388 124 HLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAKIS--SRCLKKLFFKG 178 (226)
Q Consensus 124 ~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~i~--~~~L~~L~l~~ 178 (226)
+|++|++++|.++.-. . ..+.+|+.|.+.++..++.+.-- -.+|+.+++..
T Consensus 203 ~L~~LdLs~N~l~~lp--~--~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 203 GPVILDISRTRIHSLP--S--YGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp CCSEEECTTSCCCCCC--S--SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred ccchhhcCCCCcCccC--h--hhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 9999999998887531 1 35778888888888777776521 25677777653
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.22 E-value=1.1e-06 Score=67.88 Aligned_cols=112 Identities=12% Similarity=0.082 Sum_probs=78.9
Q ss_pred CCCccccccCCccEEEecccccccc-cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE---ecC
Q 040388 2 NLPQVAFNAESIVVLELQFCKLESL-RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL---ELP 77 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~c~~~~~-~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l---~i~ 77 (226)
.+|..++ ++|++|++++|.+... .....+++|++|+|+++.++.- ....+.++++|++|+++++. +..+ .+.
T Consensus 24 ~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~ 99 (193)
T 2wfh_A 24 VLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLILSYNR-LRCIPPRTFD 99 (193)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCBCCTTTTT
T ss_pred cCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEe-CHhHccCCCCCCEEECCCCc-cCEeCHHHhC
Confidence 3566554 6899999999998743 3445789999999999988421 11236788999999999874 3333 255
Q ss_pred CCCCcceEEeccCCCceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccccC
Q 040388 78 DLNNLKEFKAYDNFRLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYII 136 (226)
Q Consensus 78 ~~~~Lk~L~l~~c~~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it 136 (226)
++++|+.|+++++. +..+ ....+..+++|++|++++|.+.
T Consensus 100 ~l~~L~~L~L~~N~-l~~~------------------~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 100 GLKSLRLLSLHGND-ISVV------------------PEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TCTTCCEEECCSSC-CCBC------------------CTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEEECCCCC-CCee------------------ChhhhhcCccccEEEeCCCCee
Confidence 67888988888873 2211 1123556789999999988764
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.18 E-value=1.2e-07 Score=80.91 Aligned_cols=134 Identities=13% Similarity=-0.000 Sum_probs=92.1
Q ss_pred cCCccEEEecccccccc---cCccCCCcccEEEecceecCHHHHHHHH----hcCCccceeeeeccCC----ceEE--ec
Q 040388 10 AESIVVLELQFCKLESL---RNNVTLSSLRKLCSSHVYEDDQVIEDFV----AGCPLIEYMHVFDCGG----LKCL--EL 76 (226)
Q Consensus 10 ~~sL~~L~L~~c~~~~~---~~~~~l~sLk~L~L~~~~~~~~~l~~l~----~~cp~Le~L~l~~c~~----l~~l--~i 76 (226)
+++|++|+|++|.+... .....+++|+.|+|++|.+++.....+. ..++.|++|++++|.- ...+ .+
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 36999999999987521 1223467999999999999877666653 3578999999999842 1111 12
Q ss_pred CCCCCcceEEeccCCCceEE--------EEecceeeEEEeCCCC-cc-----ccccccCcccCcEEEeeccccCchhHHH
Q 040388 77 PDLNNLKEFKAYDNFRLQRL--------HINGVNVCSIDLASRR-TL-----SDINVAPCKHLEKLKLSGLYIIDECPSN 142 (226)
Q Consensus 77 ~~~~~Lk~L~l~~c~~l~~~--------~~~~~~L~~L~~~~~~-~~-----~~~~~~~~~~L~~L~L~~~~it~~~~~~ 142 (226)
..+++|++|++++|. +.+. ....++|++|++.+.. .. ....+..+++|++|++++|.+++.....
T Consensus 180 ~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 258 (372)
T 3un9_A 180 AGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQV 258 (372)
T ss_dssp HTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHH
T ss_pred hcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHH
Confidence 346899999999985 2211 1134689999965431 11 0112345689999999999999877655
Q ss_pred HH
Q 040388 143 QV 144 (226)
Q Consensus 143 l~ 144 (226)
+.
T Consensus 259 L~ 260 (372)
T 3un9_A 259 LR 260 (372)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.11 E-value=5.5e-08 Score=75.26 Aligned_cols=104 Identities=18% Similarity=0.118 Sum_probs=59.8
Q ss_pred CCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe--cCCCCCcceEEeccCCCceEEEEecceeeEEEe
Q 040388 31 TLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE--LPDLNNLKEFKAYDNFRLQRLHINGVNVCSIDL 108 (226)
Q Consensus 31 ~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~--i~~~~~Lk~L~l~~c~~l~~~~~~~~~L~~L~~ 108 (226)
.+++|++|+|+++.+++ +. -+.++++|+.|++++|. +..+. +..+++|+.|++++|. +.
T Consensus 46 ~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~-l~-------------- 106 (198)
T 1ds9_A 46 TLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-IA-------------- 106 (198)
T ss_dssp HTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEE-CC--------------
T ss_pred cCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCc-CC--------------
Confidence 46677777777776633 22 34455667777766652 11110 0112344444444431 11
Q ss_pred CCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccc
Q 040388 109 ASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCM 159 (226)
Q Consensus 109 ~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~ 159 (226)
. .+ .+..+++|++|++++|.+++......+..+++|+.|++.+++
T Consensus 107 ----~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 107 ----S-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp ----C-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred ----c-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 0 11 345678899999999988764322345788899999998863
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.98 E-value=1.1e-05 Score=69.25 Aligned_cols=136 Identities=14% Similarity=0.145 Sum_probs=74.7
Q ss_pred CCccceeeeeccCCceEEe---cCCCCCcceEEeccCCCceEEEE---ecceeeEEEeCCC-CccccccccCcccCcEEE
Q 040388 57 CPLIEYMHVFDCGGLKCLE---LPDLNNLKEFKAYDNFRLQRLHI---NGVNVCSIDLASR-RTLSDINVAPCKHLEKLK 129 (226)
Q Consensus 57 cp~Le~L~l~~c~~l~~l~---i~~~~~Lk~L~l~~c~~l~~~~~---~~~~L~~L~~~~~-~~~~~~~~~~~~~L~~L~ 129 (226)
|..|+++.+.. +++.+. ..+|++|+.+++... ++.+.- ...+|+.+.+.+. .......+.+|++|+.+.
T Consensus 202 ~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~ 277 (401)
T 4fdw_A 202 YAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVT 277 (401)
T ss_dssp TCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEE
T ss_pred ecccCEEEeCC--chheehhhHhhCCCCCCEEecCCC--ccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEE
Confidence 34455554432 233331 335777777777653 222221 1145666664332 111233567889999999
Q ss_pred eeccccCc----hhHHHHHhcCCCCcEEeccccccceeecc---C-ccccceeEEcce---E----EEeCCCcceEEEee
Q 040388 130 LSGLYIID----ECPSNQVSKLQFLEYLHIDCCMKLRSAKI---S-SRCLKKLFFKGE---F----MLDTSNLSTFEYQG 194 (226)
Q Consensus 130 L~~~~it~----~~~~~l~~~~~~Le~L~l~~C~~L~~l~i---~-~~~L~~L~l~~~---~----~i~~p~L~sl~~~g 194 (226)
+.++.+.. ......+.+|++|+.+++.. .++.+.- . +.+|+.+.+... + --++ +|+++.+.+
T Consensus 278 l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~ 354 (401)
T 4fdw_A 278 TYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPANVTQINFSAFNNT-GIKEVKVEG 354 (401)
T ss_dssp EESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTTCCEECTTSSSSS-CCCEEEECC
T ss_pred eCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECccccEEcHHhCCCC-CCCEEEEcC
Confidence 98765431 11234467888999988863 3444432 2 256777776541 1 1346 888888877
Q ss_pred cceee
Q 040388 195 NLVSF 199 (226)
Q Consensus 195 ~~~~~ 199 (226)
...+.
T Consensus 355 n~~~~ 359 (401)
T 4fdw_A 355 TTPPQ 359 (401)
T ss_dssp SSCCB
T ss_pred CCCcc
Confidence 65333
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.91 E-value=6.2e-06 Score=62.15 Aligned_cols=75 Identities=12% Similarity=0.074 Sum_probs=30.4
Q ss_pred ccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe---cCCCCCcceEEecc
Q 040388 13 IVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---LPDLNNLKEFKAYD 89 (226)
Q Consensus 13 L~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---i~~~~~Lk~L~l~~ 89 (226)
.++++++++.+...+... .++|++|+|+++.++.-. ...+.++++|++|+++++. +..+. +.++++|+.|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~-~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLE-PGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccC-hhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCC
Confidence 344555554443222211 245555555555442100 1113344555555555442 22221 23344555555554
Q ss_pred C
Q 040388 90 N 90 (226)
Q Consensus 90 c 90 (226)
+
T Consensus 88 N 88 (170)
T 3g39_A 88 N 88 (170)
T ss_dssp S
T ss_pred C
Confidence 4
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.86 E-value=8e-06 Score=61.87 Aligned_cols=74 Identities=12% Similarity=0.123 Sum_probs=30.5
Q ss_pred cEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe---cCCCCCcceEEeccC
Q 040388 14 VVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---LPDLNNLKEFKAYDN 90 (226)
Q Consensus 14 ~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---i~~~~~Lk~L~l~~c 90 (226)
+.++++++.+...+... .++|++|+|+++.++.- ....+.++++|+.|+++++ .+..+. +.++++|+.|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCcccc-CHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC
Confidence 34455554443222211 24555555555544210 0112334455555555544 222221 133455555555544
No 144
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.85 E-value=3e-06 Score=76.11 Aligned_cols=115 Identities=18% Similarity=0.156 Sum_probs=79.1
Q ss_pred CccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE-ecCCCCCcceEEeccC
Q 040388 12 SIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL-ELPDLNNLKEFKAYDN 90 (226)
Q Consensus 12 sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l-~i~~~~~Lk~L~l~~c 90 (226)
.|++|+|++|.+...+....+++|+.|+|++|.++ .+..-+.++++|+.|++++|. +..+ .++++++|+.|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~-l~~lp~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNA-LENVDGVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCC-CCCCcccCCCCCCcEEECCCC
Confidence 58899999998865455567899999999999875 333457788999999999873 2222 4677899999999988
Q ss_pred CCceEE-----EEecceeeEEEeCCC--Cccccc---cccCcccCcEEEe
Q 040388 91 FRLQRL-----HINGVNVCSIDLASR--RTLSDI---NVAPCKHLEKLKL 130 (226)
Q Consensus 91 ~~l~~~-----~~~~~~L~~L~~~~~--~~~~~~---~~~~~~~L~~L~L 130 (226)
. +..+ ....++|+.|++.+. ....+. ....+++|+.|++
T Consensus 519 ~-l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 519 R-LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp C-CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred C-CCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 5 2222 124688999996553 111111 1234788888864
No 145
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.83 E-value=4.2e-06 Score=77.29 Aligned_cols=103 Identities=17% Similarity=0.151 Sum_probs=62.5
Q ss_pred CccccccCCccEEEecccccccc-cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE--ecCCCC
Q 040388 4 PQVAFNAESIVVLELQFCKLESL-RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL--ELPDLN 80 (226)
Q Consensus 4 P~~~~~~~sL~~L~L~~c~~~~~-~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l--~i~~~~ 80 (226)
|..+..++.|++|+|++|.+... .....+++|++|+|++|.++ .+..-+.++++|+.|+|++|. +..+ .+++++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGT
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCc-CCccChhhcCCC
Confidence 44555677888888888876533 23346788888888888774 223335677888888888774 2222 244567
Q ss_pred CcceEEeccCCCceEEE---EecceeeEEEeCC
Q 040388 81 NLKEFKAYDNFRLQRLH---INGVNVCSIDLAS 110 (226)
Q Consensus 81 ~Lk~L~l~~c~~l~~~~---~~~~~L~~L~~~~ 110 (226)
+|+.|++++|. +..+. ...++|++|++.+
T Consensus 294 ~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 294 QLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp TCSEEECCSSC-CCCCCSSTTSCTTCCCEECTT
T ss_pred CCCEEECCCCC-CCccChhhhcCCCccEEeCCC
Confidence 78888887773 22221 1356777777543
No 146
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.81 E-value=1.2e-05 Score=61.61 Aligned_cols=40 Identities=13% Similarity=0.093 Sum_probs=27.0
Q ss_pred ccCcccCcEEEe--eccccCchhH---HHHHhcCCCCcEEecccc
Q 040388 119 VAPCKHLEKLKL--SGLYIIDECP---SNQVSKLQFLEYLHIDCC 158 (226)
Q Consensus 119 ~~~~~~L~~L~L--~~~~it~~~~---~~l~~~~~~Le~L~l~~C 158 (226)
+...++|++|++ ++|.+++... ...+...+.|+.|++++|
T Consensus 117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 345567888888 7777877653 344455677888888765
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.74 E-value=5.6e-05 Score=56.81 Aligned_cols=32 Identities=16% Similarity=0.268 Sum_probs=17.4
Q ss_pred CccceeeeeccCCceEE---ecCCCCCcceEEeccC
Q 040388 58 PLIEYMHVFDCGGLKCL---ELPDLNNLKEFKAYDN 90 (226)
Q Consensus 58 p~Le~L~l~~c~~l~~l---~i~~~~~Lk~L~l~~c 90 (226)
+.|+.|+++++. ++.+ .+.++++|++|+++++
T Consensus 30 ~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N 64 (170)
T 3g39_A 30 TTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNN 64 (170)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS
T ss_pred CCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCC
Confidence 556666666652 2222 2345566666666665
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.71 E-value=9.7e-05 Score=55.79 Aligned_cols=79 Identities=14% Similarity=0.066 Sum_probs=39.3
Q ss_pred CccceeeeeccCCceEE---ecCCCCCcceEEeccCCCceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccc
Q 040388 58 PLIEYMHVFDCGGLKCL---ELPDLNNLKEFKAYDNFRLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLY 134 (226)
Q Consensus 58 p~Le~L~l~~c~~l~~l---~i~~~~~Lk~L~l~~c~~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 134 (226)
+.|+.|+++++. +..+ .+.++++|+.|+++++. +..+. ...+..+++|++|++++|.
T Consensus 33 ~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~------------------~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 33 TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNK-LTAIP------------------TGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCC------------------TTTTTTCTTCCEEECCSSC
T ss_pred CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCC-CCccC------------------hhHhCCcchhhEEECCCCc
Confidence 567777777653 2222 24456667777776662 22110 0112344555666665555
Q ss_pred cCchhHHHHHhcCCCCcEEeccc
Q 040388 135 IIDECPSNQVSKLQFLEYLHIDC 157 (226)
Q Consensus 135 it~~~~~~l~~~~~~Le~L~l~~ 157 (226)
++... ...+..+++|+.|++.+
T Consensus 93 l~~l~-~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 93 LKSIP-RGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp CCCCC-TTTTTTCTTCSEEECCS
T ss_pred cceeC-HHHhccccCCCEEEeCC
Confidence 54432 12234455555555554
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.70 E-value=0.00016 Score=62.04 Aligned_cols=157 Identities=8% Similarity=0.126 Sum_probs=90.9
Q ss_pred ccCCccEEEecccccccc-cCccCCCcccEEEeccee--cCHHHHHHHHhcCCccceeeeeccCCceEEe---cCCCCCc
Q 040388 9 NAESIVVLELQFCKLESL-RNNVTLSSLRKLCSSHVY--EDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---LPDLNNL 82 (226)
Q Consensus 9 ~~~sL~~L~L~~c~~~~~-~~~~~l~sLk~L~L~~~~--~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---i~~~~~L 82 (226)
.|++|+.+++.++.+... .....+.+|+.+.+...- +.+. ...+|++|+.+++.+ +++.+. ..+ .+|
T Consensus 178 ~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~----aF~~~~~L~~l~l~~--~l~~I~~~aF~~-~~L 250 (401)
T 4fdw_A 178 YCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQ----AFLKTSQLKTIEIPE--NVSTIGQEAFRE-SGI 250 (401)
T ss_dssp TCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECTT----TTTTCTTCCCEECCT--TCCEECTTTTTT-CCC
T ss_pred CcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehhh----HhhCCCCCCEEecCC--CccCcccccccc-CCc
Confidence 466777777766655422 223335667776665421 1222 367899999999876 344442 233 567
Q ss_pred ceEEeccCCCceEEE----EecceeeEEEeCCC-C------ccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCc
Q 040388 83 KEFKAYDNFRLQRLH----INGVNVCSIDLASR-R------TLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLE 151 (226)
Q Consensus 83 k~L~l~~c~~l~~~~----~~~~~L~~L~~~~~-~------~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le 151 (226)
+.+.+... ++.+. -++++|+.+.+.+. . ......+.+|++|+.+.+.. .++.-. ...+.+|.+|+
T Consensus 251 ~~i~lp~~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~-~~aF~~c~~L~ 326 (401)
T 4fdw_A 251 TTVKLPNG--VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILG-QGLLGGNRKVT 326 (401)
T ss_dssp SEEEEETT--CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEEC-TTTTTTCCSCC
T ss_pred cEEEeCCC--ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEh-hhhhcCCCCcc
Confidence 77777542 33332 24677777774332 1 12233567889999998874 343321 23457888999
Q ss_pred EEeccccccceeec---cCccccceeEEcc
Q 040388 152 YLHIDCCMKLRSAK---ISSRCLKKLFFKG 178 (226)
Q Consensus 152 ~L~l~~C~~L~~l~---i~~~~L~~L~l~~ 178 (226)
.+++.. .++.+. +..-+|+.+.+.+
T Consensus 327 ~l~lp~--~l~~I~~~aF~~~~L~~l~l~~ 354 (401)
T 4fdw_A 327 QLTIPA--NVTQINFSAFNNTGIKEVKVEG 354 (401)
T ss_dssp EEEECT--TCCEECTTSSSSSCCCEEEECC
T ss_pred EEEECc--cccEEcHHhCCCCCCCEEEEcC
Confidence 998853 345443 2222677777765
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.47 E-value=0.00018 Score=54.84 Aligned_cols=104 Identities=11% Similarity=0.030 Sum_probs=69.8
Q ss_pred ccccCCccEEEeccc-cccc-----c-cCccCCCcccEEEecceecCHHHHHH---HHhcCCccceeeeeccCC----ce
Q 040388 7 AFNAESIVVLELQFC-KLES-----L-RNNVTLSSLRKLCSSHVYEDDQVIED---FVAGCPLIEYMHVFDCGG----LK 72 (226)
Q Consensus 7 ~~~~~sL~~L~L~~c-~~~~-----~-~~~~~l~sLk~L~L~~~~~~~~~l~~---l~~~cp~Le~L~l~~c~~----l~ 72 (226)
+..+++|++|+|++| .+.. . ......++|++|+|++|.+++++... .+..++.|++|++++|.- ..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 345789999999999 7752 1 11234689999999999997766444 466788999999999842 11
Q ss_pred EE--ecCCCCCcceEEe--ccCC----C---ceEEEEecceeeEEEeCC
Q 040388 73 CL--ELPDLNNLKEFKA--YDNF----R---LQRLHINGVNVCSIDLAS 110 (226)
Q Consensus 73 ~l--~i~~~~~Lk~L~l--~~c~----~---l~~~~~~~~~L~~L~~~~ 110 (226)
.+ .+...++|++|++ ++|. + +.......++|++|++.+
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~ 160 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF 160 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccC
Confidence 11 1334578999999 6564 1 111111347888888544
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.36 E-value=9.5e-05 Score=61.62 Aligned_cols=86 Identities=21% Similarity=0.137 Sum_probs=60.8
Q ss_pred CCCccccccCCccEEEecc-cccccc--cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe---
Q 040388 2 NLPQVAFNAESIVVLELQF-CKLESL--RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE--- 75 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~-c~~~~~--~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~--- 75 (226)
.+|. +..+++|++|+|++ |.+... ....++++|+.|+|+++.++.- ....+.++++|++|+|+++. +..+.
T Consensus 23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~~~~~ 99 (347)
T 2ifg_A 23 SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-APDAFHFTPRLSRLNLSFNA-LESLSWKT 99 (347)
T ss_dssp TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE-CTTGGGSCSCCCEEECCSSC-CSCCCSTT
T ss_pred ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcccee-CHHHhcCCcCCCEEeCCCCc-cceeCHHH
Confidence 4788 77889999999996 777632 2345799999999999987331 12246788999999999873 33331
Q ss_pred cCCCCCcceEEeccCC
Q 040388 76 LPDLNNLKEFKAYDNF 91 (226)
Q Consensus 76 i~~~~~Lk~L~l~~c~ 91 (226)
+.. .+|+.|++.++.
T Consensus 100 ~~~-~~L~~l~l~~N~ 114 (347)
T 2ifg_A 100 VQG-LSLQELVLSGNP 114 (347)
T ss_dssp TCS-CCCCEEECCSSC
T ss_pred ccc-CCceEEEeeCCC
Confidence 222 338888888764
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.11 E-value=0.00051 Score=57.15 Aligned_cols=101 Identities=20% Similarity=0.103 Sum_probs=60.9
Q ss_pred EEEeccc-ccccccCccCCCcccEEEecc-eecCHHHHHHHHhcCCccceeeeeccCCceEEe---cCCCCCcceEEecc
Q 040388 15 VLELQFC-KLESLRNNVTLSSLRKLCSSH-VYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---LPDLNNLKEFKAYD 89 (226)
Q Consensus 15 ~L~L~~c-~~~~~~~~~~l~sLk~L~L~~-~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---i~~~~~Lk~L~l~~ 89 (226)
.+++++. .+...+....+++|+.|+|++ +.++.- ....+.++++|+.|+|+++ .+..+. +.++++|+.|++++
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCC
Confidence 4577776 565433344577888899985 765211 1122567788888888876 454442 34567777777777
Q ss_pred CCCceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCc
Q 040388 90 NFRLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIID 137 (226)
Q Consensus 90 c~~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~ 137 (226)
+. +..+ ....+... .|+.|++.+|.++-
T Consensus 90 N~-l~~~------------------~~~~~~~~-~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NA-LESL------------------SWKTVQGL-SLQELVLSGNPLHC 117 (347)
T ss_dssp SC-CSCC------------------CSTTTCSC-CCCEEECCSSCCCC
T ss_pred Cc-ccee------------------CHHHcccC-CceEEEeeCCCccC
Confidence 63 2210 01112233 39999999988764
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.81 E-value=0.00086 Score=54.31 Aligned_cols=104 Identities=17% Similarity=0.070 Sum_probs=62.9
Q ss_pred CcccE--EEecceec--CHHHHHHHHhcCCccceeeeeccCCceEE-ec----CCCCCcceEEeccCCCceEEEEeccee
Q 040388 33 SSLRK--LCSSHVYE--DDQVIEDFVAGCPLIEYMHVFDCGGLKCL-EL----PDLNNLKEFKAYDNFRLQRLHINGVNV 103 (226)
Q Consensus 33 ~sLk~--L~L~~~~~--~~~~l~~l~~~cp~Le~L~l~~c~~l~~l-~i----~~~~~Lk~L~l~~c~~l~~~~~~~~~L 103 (226)
|.|+. +++..+.. -...++.+..++|.|+.|+|+++. +..+ .+ ..+++|+.|+++++. +..+
T Consensus 141 p~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~------- 211 (267)
T 3rw6_A 141 PDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNE-LKSE------- 211 (267)
T ss_dssp HHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-------
T ss_pred cchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCc-cCCc-------
Confidence 34444 44444432 233344455789999999999873 3222 12 247888888888773 2210
Q ss_pred eEEEeCCCCccccccccCcccCcEEEeeccccCch------hHHHHHhcCCCCcEEecc
Q 040388 104 CSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDE------CPSNQVSKLQFLEYLHID 156 (226)
Q Consensus 104 ~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~------~~~~l~~~~~~Le~L~l~ 156 (226)
+. ...+..+ +|++|++++|.++.. ....+...||+|+.|+-.
T Consensus 212 ~~----------l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 212 RE----------LDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp GG----------GGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred hh----------hhhcccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCc
Confidence 00 0112233 899999999988652 224567889999998643
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.54 E-value=0.0049 Score=52.24 Aligned_cols=36 Identities=14% Similarity=0.117 Sum_probs=18.2
Q ss_pred ccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEecc
Q 040388 119 VAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHID 156 (226)
Q Consensus 119 ~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~ 156 (226)
+..|.+|+.+.+... ++.- -...+.+|.+|+.+++.
T Consensus 293 F~~~~~L~~i~l~~~-i~~I-~~~aF~~c~~L~~i~lp 328 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFI-GEEAFESCTSLVSIDLP 328 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEE-CTTTTTTCTTCCEECCC
T ss_pred ccccccccccccccc-ccee-chhhhcCCCCCCEEEeC
Confidence 445666666666433 2111 01224566667766663
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.18 E-value=0.0036 Score=50.67 Aligned_cols=77 Identities=14% Similarity=0.110 Sum_probs=52.2
Q ss_pred ccCCccEEEeccccccccc---C-ccCCCcccEEEecceecC-HHHHHHHHhcCCccceeeeeccCCceEE---------
Q 040388 9 NAESIVVLELQFCKLESLR---N-NVTLSSLRKLCSSHVYED-DQVIEDFVAGCPLIEYMHVFDCGGLKCL--------- 74 (226)
Q Consensus 9 ~~~sL~~L~L~~c~~~~~~---~-~~~l~sLk~L~L~~~~~~-~~~l~~l~~~cp~Le~L~l~~c~~l~~l--------- 74 (226)
.+++|++|+|++|.+.... . ...+++|+.|+|++|.++ -+.+..+ .+. .|++|++++++--..+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l-~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKI-KGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGG-TTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhc-ccC-CcceEEccCCcCccccCcchhHHHH
Confidence 4689999999999986422 1 136999999999999984 3344332 333 8999999987532111
Q ss_pred ecCCCCCcceEEe
Q 040388 75 ELPDLNNLKEFKA 87 (226)
Q Consensus 75 ~i~~~~~Lk~L~l 87 (226)
-+..+|+|+.|+-
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 1334688887763
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.13 E-value=0.02 Score=48.41 Aligned_cols=37 Identities=11% Similarity=0.143 Sum_probs=19.6
Q ss_pred cccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEecc
Q 040388 118 NVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHID 156 (226)
Q Consensus 118 ~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~ 156 (226)
.+.+|.+|+.+.+..+ ++.-. ...+.+|++|+.+++.
T Consensus 338 aF~~c~~L~~i~lp~~-l~~I~-~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 338 SFRGCTSLSNINFPLS-LRKIG-ANAFQGCINLKKVELP 374 (394)
T ss_dssp TTTTCTTCCEECCCTT-CCEEC-TTTBTTCTTCCEEEEE
T ss_pred hccCCCCCCEEEECcc-ccEeh-HHHhhCCCCCCEEEEC
Confidence 3556677777766543 22211 1234566666666654
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.03 E-value=0.073 Score=44.88 Aligned_cols=54 Identities=11% Similarity=0.118 Sum_probs=33.7
Q ss_pred cCCCcccEEEecceec--CHHHHHHHHhcCCccceeeeeccCCceEE---ecCCCCCcceEEecc
Q 040388 30 VTLSSLRKLCSSHVYE--DDQVIEDFVAGCPLIEYMHVFDCGGLKCL---ELPDLNNLKEFKAYD 89 (226)
Q Consensus 30 ~~l~sLk~L~L~~~~~--~~~~l~~l~~~cp~Le~L~l~~c~~l~~l---~i~~~~~Lk~L~l~~ 89 (226)
.++.+|+.+.+..... ... ...+|+.|+++.+.. .++.+ ...+|.+|+.+++..
T Consensus 262 ~~c~~L~~i~lp~~~~~I~~~----aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~ 320 (394)
T 4gt6_A 262 DSCAYLASVKMPDSVVSIGTG----AFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE 320 (394)
T ss_dssp TTCSSCCEEECCTTCCEECTT----TTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT
T ss_pred eecccccEEecccccceecCc----ccccccccccccCCC--cccccCceeecCCCCcCEEEeCC
Confidence 4577888888754321 222 256788888888753 34444 245677888777754
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.53 E-value=0.47 Score=39.46 Aligned_cols=12 Identities=17% Similarity=0.044 Sum_probs=5.7
Q ss_pred hcCCccceeeee
Q 040388 55 AGCPLIEYMHVF 66 (226)
Q Consensus 55 ~~cp~Le~L~l~ 66 (226)
.+|+.++...+.
T Consensus 155 ~~~~~l~~~~~~ 166 (379)
T 4h09_A 155 YKAENLEKIEVS 166 (379)
T ss_dssp TTCTTCCEEEEC
T ss_pred cccccccccccc
Confidence 445555554443
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=93.60 E-value=0.12 Score=43.47 Aligned_cols=75 Identities=20% Similarity=0.249 Sum_probs=34.4
Q ss_pred CCCCcceEEeccCCCceEEE----EecceeeEEEeCCC-CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcE
Q 040388 78 DLNNLKEFKAYDNFRLQRLH----INGVNVCSIDLASR-RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEY 152 (226)
Q Consensus 78 ~~~~Lk~L~l~~c~~l~~~~----~~~~~L~~L~~~~~-~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~ 152 (226)
+|.+|+.+.+.... ..+. .++++|+.+.+... .......+.+|.+|+.+.+..+ ++.-. ...+.+|.+|+.
T Consensus 263 ~c~~L~~i~lp~~~--~~I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~-~~aF~~C~~L~~ 338 (394)
T 4gt6_A 263 SCAYLASVKMPDSV--VSIGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEG-ITQIL-DDAFAGCEQLER 338 (394)
T ss_dssp TCSSCCEEECCTTC--CEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEEC-TTTTTTCTTCCE
T ss_pred ecccccEEeccccc--ceecCcccccccccccccCCCcccccCceeecCCCCcCEEEeCCc-ccEeh-HhHhhCCCCCCE
Confidence 45666666654321 1111 12345555554322 1111224566777777777543 22110 122456666776
Q ss_pred Eecc
Q 040388 153 LHID 156 (226)
Q Consensus 153 L~l~ 156 (226)
+++.
T Consensus 339 i~ip 342 (394)
T 4gt6_A 339 IAIP 342 (394)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 6664
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=90.58 E-value=1.2 Score=36.96 Aligned_cols=38 Identities=13% Similarity=0.085 Sum_probs=22.2
Q ss_pred cccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEecc
Q 040388 118 NVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHID 156 (226)
Q Consensus 118 ~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~ 156 (226)
.+.+|.+|+.+.+..+.++.-. ...+.+|.+|+.+++.
T Consensus 281 aF~~c~~L~~i~l~~~~i~~I~-~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIETLE-PRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TTTTCTTCCEEEECCTTCCEEC-TTTTTTCTTCCEEECC
T ss_pred ccccccccccccccccccceeh-hhhhcCCCCCCEEEcC
Confidence 3566777777777665443211 1234566777777664
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=88.29 E-value=0.52 Score=36.08 Aligned_cols=80 Identities=13% Similarity=0.193 Sum_probs=54.5
Q ss_pred ccCCccEEEeccc-cccc-----cc-CccCCCcccEEEecceecCHHH---HHHHHhcCCccceeeeeccCC----c---
Q 040388 9 NAESIVVLELQFC-KLES-----LR-NNVTLSSLRKLCSSHVYEDDQV---IEDFVAGCPLIEYMHVFDCGG----L--- 71 (226)
Q Consensus 9 ~~~sL~~L~L~~c-~~~~-----~~-~~~~l~sLk~L~L~~~~~~~~~---l~~l~~~cp~Le~L~l~~c~~----l--- 71 (226)
+.++|++|+|+++ .+.. .. ....-..|+.|+|++|.+++.+ +...+..-..|++|+|+++.- .
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 4678999999986 5541 10 1123578999999999997665 455566678899999998742 1
Q ss_pred -eEEecCCCCCcceEEeccC
Q 040388 72 -KCLELPDLNNLKEFKAYDN 90 (226)
Q Consensus 72 -~~l~i~~~~~Lk~L~l~~c 90 (226)
+.+... ..|+.|+++++
T Consensus 119 a~aL~~N--~tL~~L~L~n~ 136 (197)
T 1pgv_A 119 LRSTLVT--QSIVEFKADNQ 136 (197)
T ss_dssp HHHTTTT--CCCSEEECCCC
T ss_pred HHHHhhC--CceeEEECCCC
Confidence 112222 57999999865
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=82.82 E-value=1.1 Score=34.14 Aligned_cols=110 Identities=13% Similarity=0.110 Sum_probs=64.8
Q ss_pred CCCcccEEEecce-ecCHHHHHHH---HhcCCccceeeeeccCC-------c-eEEecCCCCCcceEEeccCCCceEEEE
Q 040388 31 TLSSLRKLCSSHV-YEDDQVIEDF---VAGCPLIEYMHVFDCGG-------L-KCLELPDLNNLKEFKAYDNFRLQRLHI 98 (226)
Q Consensus 31 ~l~sLk~L~L~~~-~~~~~~l~~l---~~~cp~Le~L~l~~c~~-------l-~~l~i~~~~~Lk~L~l~~c~~l~~~~~ 98 (226)
.-+.|+.|+|+++ .+.+++.+.+ +..-..|+.|+|++|.- + +.|.. + .+|++|+++.|. +.+.
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~-N-~tL~~L~L~~N~-Ig~~-- 113 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIET-S-PSLRVLNVESNF-LTPE-- 113 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHH-C-SSCCEEECCSSB-CCHH--
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhc-C-CccCeEecCCCc-CCHH--
Confidence 4578999999986 7877665554 44456799999998842 1 11111 2 789999999884 2110
Q ss_pred ecceeeEEEeCCCCccccccccCcccCcEEEeecc---ccCchh---HHHHHhcCCCCcEEeccc
Q 040388 99 NGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGL---YIIDEC---PSNQVSKLQFLEYLHIDC 157 (226)
Q Consensus 99 ~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~---~it~~~---~~~l~~~~~~Le~L~l~~ 157 (226)
|.... .-.+..-..|++|+++++ .+.+.. +.+....-+.|..|++..
T Consensus 114 -----------Ga~al-a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 114 -----------LLARL-LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp -----------HHHHH-HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred -----------HHHHH-HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence 00000 001223345888888754 455543 233445556788777764
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=82.39 E-value=0.93 Score=31.94 Aligned_cols=34 Identities=21% Similarity=-0.023 Sum_probs=20.5
Q ss_pred CccEEEeccccccccc--CccCCCcccEEEecceec
Q 040388 12 SIVVLELQFCKLESLR--NNVTLSSLRKLCSSHVYE 45 (226)
Q Consensus 12 sL~~L~L~~c~~~~~~--~~~~l~sLk~L~L~~~~~ 45 (226)
+|++|+|++|.+...+ ....+++|++|+|.+|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5677777777665331 123466677777777665
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=69.78 E-value=2.4 Score=29.78 Aligned_cols=34 Identities=18% Similarity=0.176 Sum_probs=22.1
Q ss_pred ccCcEEEeeccccCchhHHHHHhcCCCCcEEeccc
Q 040388 123 KHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDC 157 (226)
Q Consensus 123 ~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~ 157 (226)
++|++|+|++|.++.-. ...+..+++|+.|++.+
T Consensus 31 ~~l~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALP-PGLLDALPALRTAHLGA 64 (130)
T ss_dssp TTCSEEECTTSCCSSCC-TTTGGGCTTCCEEECCS
T ss_pred cCCCEEECCCCcCCccC-hhhhhhccccCEEEecC
Confidence 36777777777765432 23456667777777765
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=29.72 E-value=26 Score=23.13 Aligned_cols=12 Identities=8% Similarity=0.069 Sum_probs=6.0
Q ss_pred CCCCCcceEEec
Q 040388 77 PDLNNLKEFKAY 88 (226)
Q Consensus 77 ~~~~~Lk~L~l~ 88 (226)
.+|.+|+.+.+.
T Consensus 40 ~~C~~L~~i~~~ 51 (100)
T 2lz0_A 40 SGCTALEKLILT 51 (100)
T ss_dssp TTCTTCCCEEEC
T ss_pred hccCCccEEEEc
Confidence 345555555554
Done!