Query 040390
Match_columns 69
No_of_seqs 106 out of 121
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 12:37:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040390.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040390hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kv5_A FST, putative uncharact 30.8 23 0.00079 18.9 1.4 11 5-15 10-20 (33)
2 3lti_A DNA-directed RNA polyme 14.3 81 0.0028 23.3 1.9 8 17-24 4-11 (296)
3 1e6y_B Methyl-coenzyme M reduc 13.2 31 0.001 27.3 -0.7 29 21-50 108-139 (433)
4 3arc_L Photosystem II reaction 12.9 2E+02 0.0067 15.6 2.7 16 48-63 15-30 (37)
5 1cse_I Eglin C; complex(serine 12.7 43 0.0015 19.4 -0.0 8 33-40 2-9 (70)
6 1hbn_B Methyl-coenzyme M reduc 12.3 34 0.0012 27.1 -0.7 29 21-50 111-142 (442)
7 1v54_D Cytochrome C oxidase su 11.1 90 0.0031 21.0 1.2 19 2-20 76-94 (147)
8 3sqg_B Methyl-coenzyme M reduc 10.4 71 0.0024 25.3 0.5 30 21-50 109-138 (433)
9 1xd7_A YWNA; structural genomi 9.7 1.7E+02 0.0059 17.9 2.1 18 36-53 2-19 (145)
10 1jb0_M Photosystem 1 reaction 9.5 63 0.0022 16.8 -0.1 12 11-22 10-21 (31)
No 1
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=30.76 E-value=23 Score=18.95 Aligned_cols=11 Identities=27% Similarity=0.567 Sum_probs=8.8
Q ss_pred hHHHHHHHHHH
Q 040390 5 GPVVIATVLFV 15 (69)
Q Consensus 5 gpV~i~vvLFv 15 (69)
||+++|++|=+
T Consensus 10 aPivVGvvl~L 20 (33)
T 2kv5_A 10 APIFVGLVLEM 20 (33)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 79999998743
No 2
>3lti_A DNA-directed RNA polymerase subunit beta; BBM2, nucleotidyltransferase, transcription, transferase; HET: MLY MSE; 1.60A {Escherichia coli} PDB: 3e7h_A
Probab=14.31 E-value=81 Score=23.30 Aligned_cols=8 Identities=38% Similarity=1.256 Sum_probs=7.0
Q ss_pred hCcceeEE
Q 040390 17 LTPGLLFQ 24 (69)
Q Consensus 17 LsPGLLfq 24 (69)
+|||.-|+
T Consensus 4 ~SPGv~f~ 11 (296)
T 3lti_A 4 MSPGVFFD 11 (296)
T ss_dssp CCCEEEEE
T ss_pred CCCEEEEe
Confidence 69999997
No 3
>1e6y_B Methyl-coenzyme M reductase I beta subunit; biological methanogenesis, NI-enzyme, oxidoreductase, NI ENZ; HET: MHS AGM F43 TP7; 1.6A {Methanosarcina barkeri} SCOP: a.89.1.1 d.58.31.2
Probab=13.22 E-value=31 Score=27.32 Aligned_cols=29 Identities=31% Similarity=0.591 Sum_probs=23.7
Q ss_pred eeEEecCCCce---EEeecccchHHHHHHHHHH
Q 040390 21 LLFQIPGRNRV---VEFGNMQTSGASILVHSVI 50 (69)
Q Consensus 21 LLfq~PG~~r~---veFgn~~Tsg~si~vHa~i 50 (69)
+|.|+|-+ |. -||..--|+..+.++|++|
T Consensus 108 llvqvPs~-R~~~aa~y~~~~~~~a~A~~~aIi 139 (433)
T 1e6y_B 108 LLIQSPKS-RIIAGADFMSATTVGAAAVTQTIM 139 (433)
T ss_dssp EEEECCHH-HHHTSSSSTHHHHHHHHHHHHHHH
T ss_pred EEEeCCHH-HhhhhhhhhHHHHHHHHHHHHHHH
Confidence 68899954 44 6788888999999999987
No 4
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=12.89 E-value=2e+02 Score=15.62 Aligned_cols=16 Identities=25% Similarity=0.771 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHh
Q 040390 48 SVIFFGLITIFLIAIT 63 (69)
Q Consensus 48 a~ifF~l~~if~~ai~ 63 (69)
|-+|.++..||.+|+-
T Consensus 15 TSLy~GLLlifvlavl 30 (37)
T 3arc_L 15 TSLYLGLLLILVLALL 30 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4478888888877764
No 5
>1cse_I Eglin C; complex(serine proteinase-inhibitor); 1.20A {Hirudo medicinalis} SCOP: d.40.1.1 PDB: 2sec_I 2tec_I 1egl_A 1tec_I 1acb_I 3tec_I 1sib_I 1sbn_I 1mee_I 1egp_A 1egp_B
Probab=12.75 E-value=43 Score=19.39 Aligned_cols=8 Identities=50% Similarity=0.700 Sum_probs=1.4
Q ss_pred Eeecccch
Q 040390 33 EFGNMQTS 40 (69)
Q Consensus 33 eFgn~~Ts 40 (69)
|||++|||
T Consensus 2 ~~~~~k~s 9 (70)
T 1cse_I 2 EFGSELKS 9 (70)
T ss_dssp ------CB
T ss_pred CcCCCCCc
Confidence 78888876
No 6
>1hbn_B Methyl-coenzyme M reductase I beta subunit; methanogenesis, biological methanogenesis, NI-enzyme, oxidoreductase; HET: MHS AGM MGN F43 TP7; 1.16A {Methanothermobacterthermautotrophicus} SCOP: a.89.1.1 d.58.31.2 PDB: 1hbm_B* 1hbo_B* 1hbu_B* 1mro_B* 3m1v_B* 3m2r_B* 3m2u_B* 3m2v_B* 3m30_B* 3m32_B* 3pot_B* 1e6v_B*
Probab=12.27 E-value=34 Score=27.12 Aligned_cols=29 Identities=28% Similarity=0.500 Sum_probs=23.7
Q ss_pred eeEEecCCCce---EEeecccchHHHHHHHHHH
Q 040390 21 LLFQIPGRNRV---VEFGNMQTSGASILVHSVI 50 (69)
Q Consensus 21 LLfq~PG~~r~---veFgn~~Tsg~si~vHa~i 50 (69)
+|.|+|-+ |. -|+.---|+..+.++|++|
T Consensus 111 llvqvPs~-R~~~aa~y~~~~~~~a~A~~~aii 142 (442)
T 1hbn_B 111 ALVQVPSA-RFDVAAEYSAAPLVTATAFVQAII 142 (442)
T ss_dssp EEEECCHH-HHHTCSSSTHHHHHHHHHHHHHHH
T ss_pred EEEeCCHH-HhhhhcchhHHHHHHHHHHHHHHH
Confidence 68899954 44 6788888999999999987
No 7
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=11.08 E-value=90 Score=20.97 Aligned_cols=19 Identities=32% Similarity=0.537 Sum_probs=13.1
Q ss_pred CCchHHHHHHHHHHHhCcc
Q 040390 2 ADWGPVVIATVLFVLLTPG 20 (69)
Q Consensus 2 ~DWgpV~i~vvLFvlLsPG 20 (69)
.+|.+|+-++.+|+.+|=+
T Consensus 76 gewK~v~g~v~~~i~~s~~ 94 (147)
T 1v54_D 76 NEWKTVVGAAMFFIGFTAL 94 (147)
T ss_dssp SHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHH
Confidence 4688887777777766533
No 8
>3sqg_B Methyl-coenzyme M reductase, beta subunit; anaerobic methane oxidation, transferase; HET: MHS 0AF TP7 M43 1PE PGE P6G; 2.10A {Uncultured archaeon}
Probab=10.42 E-value=71 Score=25.27 Aligned_cols=30 Identities=20% Similarity=0.361 Sum_probs=24.6
Q ss_pred eeEEecCCCceEEeecccchHHHHHHHHHH
Q 040390 21 LLFQIPGRNRVVEFGNMQTSGASILVHSVI 50 (69)
Q Consensus 21 LLfq~PG~~r~veFgn~~Tsg~si~vHa~i 50 (69)
+|.|+|-+.---|+-.--|+..+.++|++|
T Consensus 109 llvqvPs~Rlaa~y~~~~~~~a~A~~~aIi 138 (433)
T 3sqg_B 109 MMVQPPTARILSDYSVGLTASMGALTHAII 138 (433)
T ss_dssp EEEECCGGGCSSBTTHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhhhhhhHHHHHHHHHHHHHHH
Confidence 789999664466777888899999999986
No 9
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=9.67 E-value=1.7e+02 Score=17.88 Aligned_cols=18 Identities=11% Similarity=0.298 Sum_probs=11.2
Q ss_pred cccchHHHHHHHHHHHHH
Q 040390 36 NMQTSGASILVHSVIFFG 53 (69)
Q Consensus 36 n~~Tsg~si~vHa~ifF~ 53 (69)
.|+|+....-+|+++|.+
T Consensus 2 ~M~s~~~~yAl~~L~~La 19 (145)
T 1xd7_A 2 SLINSRLAVAIHILSLIS 19 (145)
T ss_dssp ----CHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHH
Confidence 467777788889888765
No 10
>1jb0_M Photosystem 1 reaction centre subunit XII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.19.1 PDB: 3pcq_M*
Probab=9.48 E-value=63 Score=16.81 Aligned_cols=12 Identities=33% Similarity=0.631 Sum_probs=7.3
Q ss_pred HHHHHHhCccee
Q 040390 11 TVLFVLLTPGLL 22 (69)
Q Consensus 11 vvLFvlLsPGLL 22 (69)
++|++.|.||.|
T Consensus 10 iAL~~Al~~~iL 21 (31)
T 1jb0_M 10 VALVIALLPAVL 21 (31)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 456666666654
Done!