Query 040390
Match_columns 69
No_of_seqs 106 out of 121
Neff 3.1
Searched_HMMs 13730
Date Mon Mar 25 12:37:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040390.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040390hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1hbnb2 d.58.31.2 (B:2-188) Be 32.0 3.8 0.00027 27.6 -0.4 29 21-50 111-142 (187)
2 d2axtl1 f.23.31.1 (L:1-37) Pho 25.0 33 0.0024 17.4 2.7 17 47-63 14-30 (37)
3 d2axtt1 f.23.34.1 (T:1-30) Pho 25.0 29 0.0021 16.9 2.4 15 48-62 7-21 (30)
4 d1jb0m_ f.23.19.1 (M:) Subunit 14.7 16 0.0012 18.1 -0.1 12 11-22 10-21 (31)
5 d1e6yb2 d.58.31.2 (B:2002-2185 13.6 10 0.00075 25.3 -1.3 29 21-50 108-139 (184)
6 d1x4ka2 g.39.1.3 (A:8-34) Four 13.4 39 0.0028 16.1 1.2 10 25-35 9-18 (27)
7 d1e6vb2 d.58.31.2 (B:7-189) Be 12.9 15 0.0011 24.4 -0.6 30 21-50 107-138 (183)
8 d1uf3a_ d.159.1.6 (A:) Hypothe 12.6 52 0.0038 18.3 1.8 15 22-38 214-228 (228)
9 d2zoda2 d.139.1.1 (A:155-336) 11.7 50 0.0036 18.8 1.6 17 13-29 132-152 (182)
10 d1nb5i_ d.17.1.2 (I:) Cystatin 9.0 47 0.0034 19.5 0.7 17 24-40 72-88 (98)
No 1
>d1hbnb2 d.58.31.2 (B:2-188) Beta chain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=32.00 E-value=3.8 Score=27.61 Aligned_cols=29 Identities=28% Similarity=0.500 Sum_probs=24.3
Q ss_pred eeEEecCCCc---eEEeecccchHHHHHHHHHH
Q 040390 21 LLFQIPGRNR---VVEFGNMQTSGASILVHSVI 50 (69)
Q Consensus 21 LLfq~PG~~r---~veFgn~~Tsg~si~vHa~i 50 (69)
+|.|+|-+ | --||..--|+..+.++||+|
T Consensus 111 llvqvPs~-Ri~~aa~Y~v~~t~~~~A~~~aIi 142 (187)
T d1hbnb2 111 ALVQVPSA-RFDVAAEYSAAPLVTATAFVQAII 142 (187)
T ss_dssp EEEECCHH-HHHTCSSSTHHHHHHHHHHHHHHH
T ss_pred EEEeCCHH-HHhhhhhhhHHHHHHHHHHHHHHH
Confidence 78899954 4 56888889999999999987
No 2
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=25.03 E-value=33 Score=17.44 Aligned_cols=17 Identities=24% Similarity=0.737 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q 040390 47 HSVIFFGLITIFLIAIT 63 (69)
Q Consensus 47 Ha~ifF~l~~if~~ai~ 63 (69)
+|-+|.+++.||.+++-
T Consensus 14 rtsLy~GlLlifvl~vL 30 (37)
T d2axtl1 14 RTSLYLGLLLILVLALL 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 45678888888887764
No 3
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=24.98 E-value=29 Score=16.88 Aligned_cols=15 Identities=40% Similarity=0.720 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHH
Q 040390 48 SVIFFGLITIFLIAI 62 (69)
Q Consensus 48 a~ifF~l~~if~~ai 62 (69)
.+||.+++++|..|+
T Consensus 7 v~ifac~i~lfffai 21 (30)
T d2axtt1 7 VFIFACIIALFFFAI 21 (30)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 467888888888776
No 4
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=14.73 E-value=16 Score=18.06 Aligned_cols=12 Identities=33% Similarity=0.631 Sum_probs=8.3
Q ss_pred HHHHHHhCccee
Q 040390 11 TVLFVLLTPGLL 22 (69)
Q Consensus 11 vvLFvlLsPGLL 22 (69)
++|-+.|.||.|
T Consensus 10 valvial~pg~l 21 (31)
T d1jb0m_ 10 VALVIALLPAVL 21 (31)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 456677888865
No 5
>d1e6yb2 d.58.31.2 (B:2002-2185) Beta chain {Archaeon Methanosarcina barkeri [TaxId: 2208]}
Probab=13.65 E-value=10 Score=25.29 Aligned_cols=29 Identities=31% Similarity=0.518 Sum_probs=23.5
Q ss_pred eeEEecCCCc---eEEeecccchHHHHHHHHHH
Q 040390 21 LLFQIPGRNR---VVEFGNMQTSGASILVHSVI 50 (69)
Q Consensus 21 LLfq~PG~~r---~veFgn~~Tsg~si~vHa~i 50 (69)
+|.|+|-+ | --||..--|+..+.++||+|
T Consensus 108 llvqvPs~-Ri~~aa~Y~~~~t~~~~A~~~aIi 139 (184)
T d1e6yb2 108 LLIQSPKS-RIIAGADFMSATTVGAAAVTQTIM 139 (184)
T ss_dssp EEEECCHH-HHHTSSSSTHHHHHHHHHHHHHHH
T ss_pred EEEeCCHH-HHhhhcchhHHHHHHHHHHHHHHH
Confidence 68899954 4 25788888999999999987
No 6
>d1x4ka2 g.39.1.3 (A:8-34) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.36 E-value=39 Score=16.12 Aligned_cols=10 Identities=40% Similarity=0.956 Sum_probs=7.0
Q ss_pred ecCCCceEEee
Q 040390 25 IPGRNRVVEFG 35 (69)
Q Consensus 25 ~PG~~r~veFg 35 (69)
+||. |..||-
T Consensus 9 MPGs-rKme~k 18 (27)
T d1x4ka2 9 MPGT-RKMEYK 18 (27)
T ss_dssp CSSS-CEEEET
T ss_pred cCCc-eeeccc
Confidence 6776 688874
No 7
>d1e6vb2 d.58.31.2 (B:7-189) Beta chain {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=12.95 E-value=15 Score=24.43 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=23.7
Q ss_pred eeEEecCCCc--eEEeecccchHHHHHHHHHH
Q 040390 21 LLFQIPGRNR--VVEFGNMQTSGASILVHSVI 50 (69)
Q Consensus 21 LLfq~PG~~r--~veFgn~~Tsg~si~vHa~i 50 (69)
+|.|+|-+.- --||.---|+..+.++||+|
T Consensus 107 llvqvPs~Ri~~aa~y~v~~~~~~~A~~~aIi 138 (183)
T d1e6vb2 107 LLVQLPSERVKVMADPYSGTLQAGMAVVHAII 138 (183)
T ss_dssp EEEECCHHHHTTCSSSSTHHHHHHHHHHHHHH
T ss_pred EEEeCCHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 6889995421 45788888999999999986
No 8
>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus thermophilus [TaxId: 274]}
Probab=12.59 E-value=52 Score=18.28 Aligned_cols=15 Identities=33% Similarity=0.645 Sum_probs=10.2
Q ss_pred eEEecCCCceEEeeccc
Q 040390 22 LFQIPGRNRVVEFGNMQ 38 (69)
Q Consensus 22 Lfq~PG~~r~veFgn~~ 38 (69)
+.++.++ .+||||.+
T Consensus 214 ~i~~~~~--~ie~~~~~ 228 (228)
T d1uf3a_ 214 LLDLRAR--KLETGNVR 228 (228)
T ss_dssp EEETTTT--EEEEEECC
T ss_pred EEEccCC--EEEEEeeC
Confidence 4556554 89999864
No 9
>d2zoda2 d.139.1.1 (A:155-336) Selenide, water dikinase SelD {Aquifex aeolicus [TaxId: 63363]}
Probab=11.68 E-value=50 Score=18.81 Aligned_cols=17 Identities=41% Similarity=0.612 Sum_probs=14.6
Q ss_pred HHHHhCcc----eeEEecCCC
Q 040390 13 LFVLLTPG----LLFQIPGRN 29 (69)
Q Consensus 13 LFvlLsPG----LLfq~PG~~ 29 (69)
|..+++|| |||.+|.+.
T Consensus 132 l~~~~~~~t~g~LL~tvp~e~ 152 (182)
T d2zoda2 132 LILLSDPVTSGGLLFTINKEK 152 (182)
T ss_dssp HHHHHCCCSSCCEEEEECGGG
T ss_pred HHhccCcccCceEEEEeCHHH
Confidence 67889999 999999764
No 10
>d1nb5i_ d.17.1.2 (I:) Cystatin A (stefin A) {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.01 E-value=47 Score=19.54 Aligned_cols=17 Identities=24% Similarity=0.475 Sum_probs=14.6
Q ss_pred EecCCCceEEeecccch
Q 040390 24 QIPGRNRVVEFGNMQTS 40 (69)
Q Consensus 24 q~PG~~r~veFgn~~Ts 40 (69)
.+|+.++.+|..+.|++
T Consensus 72 ~Lp~~~~~l~L~~~q~~ 88 (98)
T d1nb5i_ 72 SLPGQNEDLVLTGYQVD 88 (98)
T ss_dssp ECTTSCCCCEEEEEEEE
T ss_pred cCCCCCCccEEEEEEcC
Confidence 47999889999999886
Done!