BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040394
(691 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CM5|A Chain A, Crystal Structure Of C418a,C419a Mutant Of Pfl From E.Coli
pdb|1CM5|B Chain B, Crystal Structure Of C418a,C419a Mutant Of Pfl From E.Coli
Length = 759
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 85/199 (42%), Gaps = 46/199 (23%)
Query: 151 KVLKACCEL--RDID--------EGMKVHCE-IVKVGGPD------SFVLTGLVDMYAKC 193
K+++ C+ R++D E K H + + V PD S VLTGL D Y +
Sbjct: 116 KMIEGSCKAYNRELDPMIKKIFTEYRKTHNQGVFDVYTPDILRCRKSGVLTGLPDAYGRG 175
Query: 194 RDIGSSRQV----FDETLDKNVVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITL 249
R IG R+V D + + +TS+ A ++N E + R+RE E ++ L
Sbjct: 176 RIIGDYRRVALYGIDYLMKDKLAQFTSLQAD-LENGVNLEQTI---RLREEIAEQHR-AL 230
Query: 250 GSLVTACAK---------LRALHQGKWLH-GYILKI----GIEINSHLVTALLDMYV--- 292
G + AK A +W + GY+ + G ++ + LD+Y+
Sbjct: 231 GQMKEMAAKYGYDISGPATNAQEAIQWTYFGYLAAVKSQNGAAMSFGRTSTFLDVYIERD 290
Query: 293 -KCGNI--RDARSVFDELC 308
K G I ++A+ + D L
Sbjct: 291 LKAGKITEQEAQEMVDHLV 309
>pdb|2PFL|A Chain A, Crystal Structure Of Pfl From E.Coli
pdb|2PFL|B Chain B, Crystal Structure Of Pfl From E.Coli
pdb|3PFL|A Chain A, Crystal Structure Of Pfl From E.coli In Complex With
Substrate Analogue Oxamate
pdb|3PFL|B Chain B, Crystal Structure Of Pfl From E.coli In Complex With
Substrate Analogue Oxamate
pdb|1H16|A Chain A, Pyruvate Formate-Lyase (E.Coli) In Complex With Pyruvate
And Coa
pdb|1H17|A Chain A, Pyruvate Formate-Lyase (E.Coli) In Complex With Coa And
The Substrate Analog Oxamate
pdb|1H18|A Chain A, Pyruvate Formate-Lyase (E.Coli) In Complex With Pyruvate
pdb|1H18|B Chain B, Pyruvate Formate-Lyase (E.Coli) In Complex With Pyruvate
pdb|1MZO|A Chain A, Crystal Structure Of Pyruvate Formate-Lyase With Pyruvate
pdb|1MZO|B Chain B, Crystal Structure Of Pyruvate Formate-Lyase With Pyruvate
Length = 759
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 85/199 (42%), Gaps = 46/199 (23%)
Query: 151 KVLKACCEL--RDID--------EGMKVHCE-IVKVGGPD------SFVLTGLVDMYAKC 193
K+++ C+ R++D E K H + + V PD S VLTGL D Y +
Sbjct: 116 KMIEGSCKAYNRELDPMIKKIFTEYRKTHNQGVFDVYTPDILRCRKSGVLTGLPDAYGRG 175
Query: 194 RDIGSSRQV----FDETLDKNVVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITL 249
R IG R+V D + + +TS+ A ++N E + R+RE E ++ L
Sbjct: 176 RIIGDYRRVALYGIDYLMKDKLAQFTSLQAD-LENGVNLEQTI---RLREEIAEQHR-AL 230
Query: 250 GSLVTACAK---------LRALHQGKWLH-GYILKI----GIEINSHLVTALLDMYV--- 292
G + AK A +W + GY+ + G ++ + LD+Y+
Sbjct: 231 GQMKEMAAKYGYDISGPATNAQEAIQWTYFGYLAAVKSQNGAAMSFGRTSTFLDVYIERD 290
Query: 293 -KCGNI--RDARSVFDELC 308
K G I ++A+ + D L
Sbjct: 291 LKAGKITEQEAQEMVDHLV 309
>pdb|1QHM|A Chain A, Escherichia Coli Pyruvate Formate Lyase Large Domain
pdb|1QHM|B Chain B, Escherichia Coli Pyruvate Formate Lyase Large Domain
Length = 624
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 29/153 (18%)
Query: 180 SFVLTGLVDMYAKCRDIGSSRQV----FDETLDKNVVSWTSMIAGYVQNDCAQEGLVLFN 235
S VLTGL D Y + R IG R+V D + + +TS+ A ++N E +
Sbjct: 162 SGVLTGLPDAYGRGRIIGDYRRVALYGIDYLMKDKLAQFTSLQAD-LENGVNLEQTI--- 217
Query: 236 RMREGFVEGNQITLGSLVTACAK---------LRALHQGKWLH-GYILKI----GIEINS 281
R+RE E ++ LG + AK A +W + GY+ + G ++
Sbjct: 218 RLREEIAEQHR-ALGQMKEMAAKYGYDISGPATNAQEAIQWTYFGYLAAVKSQNGAAMSF 276
Query: 282 HLVTALLDMYV----KCGNI--RDARSVFDELC 308
+ LD+Y+ K G I ++A+ + D L
Sbjct: 277 GRTSTFLDVYIERDLKAGKITEQEAQEMVDHLV 309
>pdb|1PX5|A Chain A, Crystal Structure Of The 2'-Specific And Double-Stranded
Rna-Activated Interferon-Induced Antiviral Protein
2'-5'- Oligoadenylate Synthetase
pdb|1PX5|B Chain B, Crystal Structure Of The 2'-Specific And Double-Stranded
Rna-Activated Interferon-Induced Antiviral Protein
2'-5'- Oligoadenylate Synthetase
Length = 349
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 529 QPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDF 562
+PN I+ ++ C G GE CF + RDF
Sbjct: 163 KPNPEIYVQLIKECKSRGKEGEFSTCFTELQRDF 196
>pdb|3D23|B Chain B, Main Protease Of Hcov-Hku1
pdb|3D23|A Chain A, Main Protease Of Hcov-Hku1
pdb|3D23|C Chain C, Main Protease Of Hcov-Hku1
pdb|3D23|D Chain D, Main Protease Of Hcov-Hku1
Length = 302
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 439 ACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALL-NFYAKCGDAQSARM-VFDAMREKN 496
+C S+G V G S+ Q LS+ + GT NFY DAQ ++ V D ++ N
Sbjct: 146 SCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFTGNFYGPYRDAQVVQLPVKDYVQTVN 205
Query: 497 TVTW 500
+ W
Sbjct: 206 VIAW 209
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,442,264
Number of Sequences: 62578
Number of extensions: 774263
Number of successful extensions: 2033
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2032
Number of HSP's gapped (non-prelim): 5
length of query: 691
length of database: 14,973,337
effective HSP length: 106
effective length of query: 585
effective length of database: 8,340,069
effective search space: 4878940365
effective search space used: 4878940365
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)