Query 040394
Match_columns 691
No_of_seqs 618 out of 3850
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 08:01:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040394.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040394hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 5.8E-95 1.3E-99 810.2 75.2 655 33-689 63-746 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 1E-74 2.2E-79 647.4 63.3 556 108-669 48-625 (857)
3 PLN03081 pentatricopeptide (PP 100.0 6.9E-74 1.5E-78 625.3 59.2 498 108-689 84-583 (697)
4 PLN03218 maturation of RBCL 1; 100.0 4.8E-67 1E-71 572.0 62.4 528 142-687 366-933 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 7.5E-67 1.6E-71 570.5 60.8 526 50-601 371-916 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 2.8E-63 6E-68 542.0 47.3 482 33-533 99-611 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.2E-37 6.9E-42 354.7 69.0 577 60-661 309-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.1E-36 2.4E-41 350.1 67.2 581 60-666 275-869 (899)
9 PRK11447 cellulose synthase su 100.0 7.1E-27 1.5E-31 268.2 62.5 587 60-662 42-739 (1157)
10 PRK11447 cellulose synthase su 100.0 4.4E-25 9.5E-30 253.5 65.7 542 60-628 76-739 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 4.9E-23 1.1E-27 225.3 60.7 579 60-664 58-707 (987)
12 PRK09782 bacteriophage N4 rece 99.9 3.4E-21 7.4E-26 211.0 58.7 553 88-665 52-674 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 1.6E-21 3.5E-26 188.9 33.0 434 158-652 60-508 (966)
14 KOG4626 O-linked N-acetylgluco 99.9 2.3E-20 5E-25 181.0 34.3 424 215-665 52-487 (966)
15 PRK11788 tetratricopeptide rep 99.9 6.6E-20 1.4E-24 188.3 30.8 303 360-682 48-366 (389)
16 KOG2002 TPR-containing nuclear 99.9 1.3E-17 2.7E-22 171.0 46.0 566 60-666 178-801 (1018)
17 TIGR00990 3a0801s09 mitochondr 99.9 2.7E-18 5.8E-23 185.6 43.8 250 394-663 307-571 (615)
18 KOG2002 TPR-containing nuclear 99.9 9.5E-17 2.1E-21 164.6 47.7 552 95-663 145-745 (1018)
19 PRK10049 pgaA outer membrane p 99.8 8.2E-17 1.8E-21 177.1 46.9 393 251-663 20-456 (765)
20 PRK11788 tetratricopeptide rep 99.8 2.7E-18 5.8E-23 176.4 32.2 290 159-467 48-354 (389)
21 PRK15174 Vi polysaccharide exp 99.8 3E-17 6.6E-22 176.5 39.9 323 286-633 47-385 (656)
22 TIGR00990 3a0801s09 mitochondr 99.8 3.5E-17 7.7E-22 176.9 40.6 91 114-206 130-220 (615)
23 KOG0495 HAT repeat protein [RN 99.8 1.1E-13 2.5E-18 136.0 58.8 573 60-665 265-882 (913)
24 PRK14574 hmsH outer membrane p 99.8 1.4E-15 3E-20 163.9 48.6 188 473-660 299-510 (822)
25 PRK15174 Vi polysaccharide exp 99.8 1.8E-16 3.8E-21 170.7 40.9 348 92-460 17-382 (656)
26 KOG2076 RNA polymerase III tra 99.8 5.6E-15 1.2E-19 150.9 47.6 349 311-665 413-851 (895)
27 PRK10049 pgaA outer membrane p 99.8 1.5E-15 3.3E-20 167.1 44.3 382 60-460 29-457 (765)
28 KOG4422 Uncharacterized conser 99.8 6.4E-15 1.4E-19 137.5 40.5 320 112-461 117-464 (625)
29 KOG2076 RNA polymerase III tra 99.8 3E-14 6.6E-19 145.6 48.8 592 60-659 153-891 (895)
30 PRK14574 hmsH outer membrane p 99.8 1.6E-14 3.4E-19 155.8 47.6 438 156-637 44-521 (822)
31 KOG2003 TPR repeat-containing 99.8 1.1E-14 2.3E-19 136.8 34.3 203 441-649 501-709 (840)
32 KOG0495 HAT repeat protein [RN 99.7 2.8E-11 6.1E-16 119.5 54.0 489 122-642 387-893 (913)
33 KOG4422 Uncharacterized conser 99.7 5.8E-13 1.3E-17 124.6 40.4 421 54-527 121-591 (625)
34 KOG4318 Bicoid mRNA stability 99.7 2.2E-12 4.9E-17 131.4 43.5 86 209-297 202-287 (1088)
35 KOG1915 Cell cycle control pro 99.7 2E-11 4.4E-16 115.9 42.0 479 159-660 86-622 (677)
36 KOG4318 Bicoid mRNA stability 99.7 8.4E-13 1.8E-17 134.5 34.7 134 535-673 462-603 (1088)
37 KOG2003 TPR repeat-containing 99.6 1.1E-12 2.3E-17 123.6 27.4 458 153-663 208-689 (840)
38 COG2956 Predicted N-acetylgluc 99.6 1.6E-12 3.5E-17 117.5 25.0 303 364-685 52-369 (389)
39 KOG1915 Cell cycle control pro 99.6 4E-10 8.6E-15 107.4 41.7 454 182-662 75-584 (677)
40 KOG1173 Anaphase-promoting com 99.6 9.3E-12 2E-16 121.2 31.6 262 380-663 243-518 (611)
41 PF13429 TPR_15: Tetratricopep 99.6 9.4E-15 2E-19 141.8 11.0 257 386-662 13-276 (280)
42 KOG0547 Translocase of outer m 99.6 1.4E-11 3.1E-16 117.5 30.4 213 442-661 338-564 (606)
43 PRK10747 putative protoheme IX 99.5 9.6E-12 2.1E-16 126.3 30.4 216 438-662 161-389 (398)
44 PRK10747 putative protoheme IX 99.5 1.1E-11 2.3E-16 126.0 29.7 284 294-629 97-390 (398)
45 KOG0547 Translocase of outer m 99.5 4.5E-11 9.7E-16 114.2 29.5 337 114-493 118-489 (606)
46 TIGR00540 hemY_coli hemY prote 99.5 3.1E-11 6.7E-16 123.4 30.8 283 323-660 95-396 (409)
47 KOG2047 mRNA splicing factor [ 99.5 3.1E-08 6.8E-13 98.4 49.1 544 82-656 104-716 (835)
48 KOG1155 Anaphase-promoting com 99.5 6.7E-10 1.5E-14 105.7 36.2 285 356-662 236-535 (559)
49 KOG1173 Anaphase-promoting com 99.5 1.1E-10 2.4E-15 113.8 31.4 494 50-577 17-531 (611)
50 TIGR00540 hemY_coli hemY prote 99.5 1.1E-10 2.3E-15 119.5 33.2 285 292-628 95-398 (409)
51 PF13429 TPR_15: Tetratricopep 99.5 1.3E-13 2.9E-18 133.8 10.3 256 218-492 15-274 (280)
52 KOG1126 DNA-binding cell divis 99.5 1.5E-11 3.4E-16 122.3 23.9 279 363-665 335-622 (638)
53 KOG1174 Anaphase-promoting com 99.5 1.6E-09 3.4E-14 101.6 35.1 298 322-640 206-511 (564)
54 KOG0985 Vesicle coat protein c 99.4 6.5E-08 1.4E-12 100.7 46.1 602 5-658 515-1244(1666)
55 KOG3785 Uncharacterized conser 99.4 2.7E-08 5.8E-13 91.6 38.8 414 156-603 67-497 (557)
56 KOG2047 mRNA splicing factor [ 99.4 1.7E-07 3.7E-12 93.3 47.0 503 60-585 116-711 (835)
57 COG3071 HemY Uncharacterized e 99.4 7.1E-10 1.5E-14 104.0 29.1 216 437-661 160-388 (400)
58 KOG1155 Anaphase-promoting com 99.4 7.2E-09 1.6E-13 98.9 35.8 352 179-591 163-530 (559)
59 COG3071 HemY Uncharacterized e 99.4 1.5E-09 3.2E-14 101.9 30.2 281 159-460 97-391 (400)
60 KOG2376 Signal recognition par 99.4 1.4E-08 3E-13 100.1 35.4 191 471-672 314-524 (652)
61 KOG1126 DNA-binding cell divis 99.4 2.4E-10 5.2E-15 114.0 23.6 280 261-567 334-623 (638)
62 KOG1840 Kinesin light chain [C 99.4 8.3E-10 1.8E-14 111.4 27.9 201 436-662 247-478 (508)
63 TIGR02521 type_IV_pilW type IV 99.3 3.8E-10 8.2E-15 106.9 23.3 198 465-663 30-232 (234)
64 COG2956 Predicted N-acetylgluc 99.3 3.2E-09 6.9E-14 96.6 27.1 284 224-525 48-346 (389)
65 KOG4162 Predicted calmodulin-b 99.3 6.4E-08 1.4E-12 98.5 38.4 485 123-663 239-783 (799)
66 KOG1156 N-terminal acetyltrans 99.3 1.1E-07 2.5E-12 94.8 39.0 430 149-665 11-470 (700)
67 PF13041 PPR_2: PPR repeat fam 99.3 8.2E-12 1.8E-16 84.2 6.3 50 209-258 1-50 (50)
68 KOG1156 N-terminal acetyltrans 99.3 2E-07 4.3E-12 93.1 39.1 228 124-355 20-260 (700)
69 KOG3616 Selective LIM binding 99.3 2.3E-07 5E-12 93.5 38.7 512 60-665 504-1026(1636)
70 KOG3616 Selective LIM binding 99.3 9.7E-08 2.1E-12 96.1 35.6 422 156-658 500-932 (1636)
71 KOG0985 Vesicle coat protein c 99.2 6.3E-06 1.4E-10 86.5 49.9 272 361-656 852-1188(1666)
72 PF13041 PPR_2: PPR repeat fam 99.2 2.3E-11 5E-16 82.0 6.3 50 310-359 1-50 (50)
73 KOG3785 Uncharacterized conser 99.2 1E-07 2.2E-12 87.9 31.1 470 153-670 29-521 (557)
74 PRK12370 invasion protein regu 99.2 6.5E-09 1.4E-13 110.6 25.4 246 395-665 275-537 (553)
75 KOG1127 TPR repeat-containing 99.2 4.2E-07 9.1E-12 95.1 36.7 565 64-660 474-1101(1238)
76 KOG1129 TPR repeat-containing 99.2 7.2E-10 1.6E-14 100.6 14.7 229 385-663 227-458 (478)
77 PF12569 NARP1: NMDA receptor- 99.2 2.3E-07 5E-12 95.3 34.9 302 154-493 12-332 (517)
78 PRK12370 invasion protein regu 99.2 6E-09 1.3E-13 110.9 23.7 211 444-663 275-502 (553)
79 TIGR02521 type_IV_pilW type IV 99.2 1.6E-08 3.4E-13 95.7 24.4 199 428-631 29-234 (234)
80 KOG2376 Signal recognition par 99.2 5.7E-06 1.2E-10 82.1 41.4 438 119-594 20-517 (652)
81 KOG1174 Anaphase-promoting com 99.2 5.2E-07 1.1E-11 85.2 32.5 301 343-666 190-503 (564)
82 KOG4162 Predicted calmodulin-b 99.1 4.1E-07 8.9E-12 92.8 33.5 272 2-274 228-541 (799)
83 COG3063 PilF Tfp pilus assembl 99.1 5.8E-09 1.3E-13 90.6 17.3 161 500-665 38-204 (250)
84 KOG3617 WD40 and TPR repeat-co 99.1 4.8E-06 1E-10 85.4 39.6 337 82-456 728-1106(1416)
85 KOG1129 TPR repeat-containing 99.1 6.3E-09 1.4E-13 94.7 16.4 194 466-665 223-426 (478)
86 KOG1840 Kinesin light chain [C 99.1 1.7E-07 3.7E-12 95.0 27.2 125 433-557 328-475 (508)
87 PRK11189 lipoprotein NlpI; Pro 99.0 3.2E-08 6.9E-13 96.2 21.2 91 433-525 67-160 (296)
88 KOG3617 WD40 and TPR repeat-co 99.0 6.3E-07 1.4E-11 91.6 30.3 252 318-618 918-1189(1416)
89 COG3063 PilF Tfp pilus assembl 99.0 1.4E-07 3E-12 82.3 21.5 200 432-636 37-243 (250)
90 PF12569 NARP1: NMDA receptor- 99.0 2E-07 4.3E-12 95.8 26.5 258 387-665 10-293 (517)
91 KOG4340 Uncharacterized conser 99.0 1.3E-06 2.8E-11 78.9 27.2 235 259-524 125-373 (459)
92 KOG1127 TPR repeat-containing 99.0 2.8E-06 6E-11 89.2 33.3 341 55-410 501-879 (1238)
93 PRK11189 lipoprotein NlpI; Pro 99.0 2.6E-07 5.6E-12 89.9 25.1 214 445-667 41-269 (296)
94 KOG0624 dsRNA-activated protei 99.0 1.3E-06 2.9E-11 80.4 27.5 311 281-637 38-378 (504)
95 KOG0548 Molecular co-chaperone 98.9 1.2E-06 2.5E-11 86.0 25.4 354 289-662 10-454 (539)
96 KOG1125 TPR repeat-containing 98.9 6.6E-08 1.4E-12 95.4 16.6 219 440-662 295-526 (579)
97 PF04733 Coatomer_E: Coatomer 98.9 1.4E-07 3E-12 90.2 18.0 156 472-634 108-270 (290)
98 cd05804 StaR_like StaR_like; a 98.9 1.6E-05 3.5E-10 80.6 33.6 194 314-525 8-214 (355)
99 cd05804 StaR_like StaR_like; a 98.8 6.3E-06 1.4E-10 83.5 30.0 299 349-664 8-337 (355)
100 PF04733 Coatomer_E: Coatomer 98.8 1.9E-07 4.1E-12 89.3 17.4 246 389-663 9-265 (290)
101 KOG4340 Uncharacterized conser 98.8 3.2E-05 7E-10 70.1 28.1 311 83-408 13-337 (459)
102 KOG0548 Molecular co-chaperone 98.8 4E-05 8.7E-10 75.6 30.7 102 543-647 369-473 (539)
103 KOG0624 dsRNA-activated protei 98.7 0.00017 3.7E-09 67.0 31.8 318 179-558 37-367 (504)
104 PRK04841 transcriptional regul 98.7 4.7E-05 1E-09 87.7 36.1 368 286-664 346-761 (903)
105 PRK04841 transcriptional regul 98.7 0.0021 4.7E-08 74.2 48.7 408 128-561 292-760 (903)
106 TIGR03302 OM_YfiO outer membra 98.7 2.1E-06 4.5E-11 81.1 18.4 182 463-664 30-233 (235)
107 KOG1070 rRNA processing protei 98.6 3.5E-06 7.7E-11 91.4 20.9 201 463-667 1455-1667(1710)
108 PRK10370 formate-dependent nit 98.6 3.4E-06 7.4E-11 76.1 16.9 119 545-666 52-176 (198)
109 PF12854 PPR_1: PPR repeat 98.6 7.7E-08 1.7E-12 57.9 4.1 32 276-307 2-33 (34)
110 KOG1125 TPR repeat-containing 98.6 3.1E-06 6.6E-11 83.9 17.2 256 357-656 295-564 (579)
111 KOG2053 Mitochondrial inherita 98.5 0.0021 4.5E-08 67.8 40.0 159 499-661 438-606 (932)
112 PRK15359 type III secretion sy 98.5 2.3E-06 5E-11 73.0 13.6 120 518-644 14-136 (144)
113 KOG1914 mRNA cleavage and poly 98.5 0.0016 3.4E-08 64.7 34.9 155 431-586 367-528 (656)
114 PF12854 PPR_1: PPR repeat 98.5 1.3E-07 2.7E-12 57.0 3.5 32 241-272 2-33 (34)
115 PRK15359 type III secretion sy 98.5 2.8E-06 6E-11 72.4 12.5 101 563-665 21-123 (144)
116 PRK15179 Vi polysaccharide bio 98.5 1.6E-05 3.6E-10 85.2 20.7 172 496-678 85-260 (694)
117 PLN02789 farnesyltranstransfer 98.5 9.7E-05 2.1E-09 71.8 24.0 223 433-661 40-300 (320)
118 KOG1128 Uncharacterized conser 98.4 1.9E-05 4.2E-10 80.5 17.5 221 425-665 393-618 (777)
119 PRK14720 transcript cleavage f 98.4 0.0011 2.4E-08 72.2 31.5 218 75-323 24-268 (906)
120 PRK14720 transcript cleavage f 98.4 6.7E-05 1.5E-09 81.3 22.1 150 465-645 115-268 (906)
121 KOG3081 Vesicle coat complex C 98.4 0.00031 6.6E-09 63.2 22.3 176 451-634 94-276 (299)
122 KOG1070 rRNA processing protei 98.4 0.00014 3E-09 79.7 23.8 236 368-625 1445-1696(1710)
123 KOG1914 mRNA cleavage and poly 98.3 0.0041 8.8E-08 61.9 36.8 78 143-221 17-96 (656)
124 KOG2053 Mitochondrial inherita 98.3 0.0067 1.5E-07 64.2 45.0 492 90-598 53-609 (932)
125 PRK10370 formate-dependent nit 98.3 7E-05 1.5E-09 67.6 18.5 154 473-638 23-182 (198)
126 TIGR03302 OM_YfiO outer membra 98.3 6.1E-05 1.3E-09 71.1 18.5 183 427-632 30-235 (235)
127 TIGR02552 LcrH_SycD type III s 98.3 1.3E-05 2.9E-10 68.0 12.0 94 570-663 19-114 (135)
128 COG5010 TadD Flp pilus assembl 98.3 5.6E-05 1.2E-09 67.9 15.9 160 496-659 66-227 (257)
129 KOG1128 Uncharacterized conser 98.2 4.3E-05 9.4E-10 78.1 16.2 188 463-665 395-584 (777)
130 COG4783 Putative Zn-dependent 98.2 0.00019 4.2E-09 70.3 19.4 110 508-622 317-430 (484)
131 KOG3060 Uncharacterized conser 98.2 0.00018 3.9E-09 64.2 17.3 156 504-663 59-220 (289)
132 PRK15363 pathogenicity island 98.2 2.2E-05 4.8E-10 65.5 11.1 97 568-664 35-133 (157)
133 COG5010 TadD Flp pilus assembl 98.2 0.00015 3.3E-09 65.2 16.2 150 355-521 74-226 (257)
134 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 3.8E-05 8.2E-10 76.1 13.8 122 535-661 172-295 (395)
135 PLN02789 farnesyltranstransfer 98.2 0.0013 2.9E-08 64.0 24.2 233 385-639 41-312 (320)
136 KOG3081 Vesicle coat complex C 98.2 0.00066 1.4E-08 61.2 19.8 161 232-399 94-259 (299)
137 COG4783 Putative Zn-dependent 98.1 0.0004 8.8E-09 68.1 19.1 175 481-661 252-435 (484)
138 PRK15179 Vi polysaccharide bio 98.1 0.00036 7.9E-09 75.1 20.7 129 110-240 85-217 (694)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 5.2E-05 1.1E-09 75.1 13.2 120 86-206 175-294 (395)
140 TIGR00756 PPR pentatricopeptid 98.1 6.5E-06 1.4E-10 50.5 4.2 33 213-245 2-34 (35)
141 PF12895 Apc3: Anaphase-promot 98.0 6.6E-06 1.4E-10 62.8 4.6 78 581-659 2-83 (84)
142 PF09976 TPR_21: Tetratricopep 98.0 0.00015 3.2E-09 62.2 13.4 115 545-660 24-144 (145)
143 TIGR02552 LcrH_SycD type III s 98.0 0.00019 4.1E-09 60.9 13.5 114 519-637 5-122 (135)
144 TIGR00756 PPR pentatricopeptid 98.0 1E-05 2.2E-10 49.7 4.1 33 499-531 2-34 (35)
145 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00011 2.4E-09 60.7 11.0 94 571-664 5-106 (119)
146 PF13414 TPR_11: TPR repeat; P 98.0 2.8E-05 6.1E-10 56.7 6.5 65 599-663 2-67 (69)
147 cd00189 TPR Tetratricopeptide 98.0 8.7E-05 1.9E-09 58.3 10.0 94 571-664 3-98 (100)
148 PF13812 PPR_3: Pentatricopept 97.9 1.5E-05 3.4E-10 48.4 4.3 33 212-244 2-34 (34)
149 PF13812 PPR_3: Pentatricopept 97.9 1.7E-05 3.8E-10 48.1 4.1 33 498-530 2-34 (34)
150 KOG3060 Uncharacterized conser 97.9 0.0046 9.9E-08 55.5 20.4 151 326-493 26-181 (289)
151 PF13432 TPR_16: Tetratricopep 97.9 3.5E-05 7.6E-10 55.4 6.2 59 606-664 3-61 (65)
152 COG3898 Uncharacterized membra 97.9 0.028 6.2E-07 53.8 26.7 243 392-663 131-392 (531)
153 COG4235 Cytochrome c biogenesi 97.8 9E-05 1.9E-09 68.5 9.1 112 564-675 151-268 (287)
154 KOG0553 TPR repeat-containing 97.8 0.00014 3.1E-09 66.7 10.0 71 571-641 118-190 (304)
155 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.0003 6.5E-09 58.0 11.4 105 534-638 4-114 (119)
156 PF09976 TPR_21: Tetratricopep 97.8 0.0011 2.4E-08 56.7 15.0 124 500-626 15-144 (145)
157 PRK02603 photosystem I assembl 97.7 0.00044 9.6E-09 61.3 11.3 97 568-664 35-150 (172)
158 PLN03088 SGT1, suppressor of 97.7 0.00043 9.3E-09 69.1 11.7 105 539-646 9-116 (356)
159 PF14559 TPR_19: Tetratricopep 97.7 6.9E-05 1.5E-09 54.4 4.5 54 611-664 2-55 (68)
160 PF01535 PPR: PPR repeat; Int 97.6 6.2E-05 1.3E-09 44.5 3.4 29 213-241 2-30 (31)
161 PF13371 TPR_9: Tetratricopept 97.6 0.0002 4.2E-09 52.9 6.5 59 607-665 2-60 (73)
162 CHL00033 ycf3 photosystem I as 97.6 0.00066 1.4E-08 60.0 10.9 93 568-660 35-139 (168)
163 PF08579 RPM2: Mitochondrial r 97.6 0.001 2.2E-08 51.5 10.1 82 213-294 27-117 (120)
164 PF01535 PPR: PPR repeat; Int 97.6 8.6E-05 1.9E-09 43.8 3.4 30 499-528 2-31 (31)
165 PF04840 Vps16_C: Vps16, C-ter 97.5 0.097 2.1E-06 51.0 28.4 78 473-556 184-261 (319)
166 KOG0553 TPR repeat-containing 97.5 0.00035 7.5E-09 64.3 7.7 88 576-663 89-178 (304)
167 PF13432 TPR_16: Tetratricopep 97.5 0.00031 6.7E-09 50.4 6.1 61 574-634 3-65 (65)
168 COG4700 Uncharacterized protei 97.5 0.016 3.4E-07 49.5 16.6 133 528-662 85-221 (251)
169 PF07079 DUF1347: Protein of u 97.5 0.13 2.7E-06 50.7 39.7 126 476-606 389-531 (549)
170 PLN03088 SGT1, suppressor of 97.5 0.0013 2.8E-08 65.7 12.0 101 504-608 9-111 (356)
171 PF14559 TPR_19: Tetratricopep 97.5 0.00018 3.9E-09 52.2 4.5 63 579-641 2-66 (68)
172 KOG0550 Molecular chaperone (D 97.5 0.0072 1.6E-07 58.2 15.9 86 578-663 259-350 (486)
173 PF07079 DUF1347: Protein of u 97.4 0.14 3E-06 50.4 39.4 70 590-660 446-521 (549)
174 PF12895 Apc3: Anaphase-promot 97.4 0.00036 7.7E-09 53.2 6.0 79 510-592 2-82 (84)
175 PRK10153 DNA-binding transcrip 97.4 0.0045 9.8E-08 64.7 15.7 139 495-635 335-488 (517)
176 PRK10153 DNA-binding transcrip 97.4 0.0064 1.4E-07 63.6 16.4 135 528-666 333-485 (517)
177 PF05843 Suf: Suppressor of fo 97.4 0.0059 1.3E-07 58.7 14.8 133 499-634 3-141 (280)
178 PF10037 MRP-S27: Mitochondria 97.3 0.0039 8.5E-08 62.4 13.2 122 424-545 60-186 (429)
179 PRK15331 chaperone protein Sic 97.3 0.0025 5.4E-08 53.8 9.9 88 575-662 44-133 (165)
180 PF12688 TPR_5: Tetratrico pep 97.3 0.004 8.6E-08 50.4 10.9 105 117-221 7-116 (120)
181 PRK02603 photosystem I assembl 97.3 0.0034 7.4E-08 55.6 11.5 129 112-261 36-166 (172)
182 PRK10866 outer membrane biogen 97.3 0.054 1.2E-06 50.7 19.9 174 472-662 38-240 (243)
183 cd00189 TPR Tetratricopeptide 97.3 0.0013 2.8E-08 51.3 8.1 91 114-205 3-93 (100)
184 COG5107 RNA14 Pre-mRNA 3'-end 97.3 0.21 4.5E-06 49.1 30.9 131 499-633 399-535 (660)
185 KOG1130 Predicted G-alpha GTPa 97.3 0.0054 1.2E-07 58.8 12.8 128 535-662 198-343 (639)
186 PRK10803 tol-pal system protei 97.3 0.0023 5E-08 60.3 10.3 93 571-663 146-246 (263)
187 PF13281 DUF4071: Domain of un 97.3 0.033 7.2E-07 54.6 18.3 161 471-634 146-339 (374)
188 PF06239 ECSIT: Evolutionarily 97.2 0.0041 8.9E-08 54.8 10.7 89 494-583 44-153 (228)
189 PF13431 TPR_17: Tetratricopep 97.2 0.00025 5.4E-09 42.6 2.3 34 622-655 1-34 (34)
190 PF14938 SNAP: Soluble NSF att 97.2 0.033 7.2E-07 53.8 18.2 124 288-411 121-267 (282)
191 PF04840 Vps16_C: Vps16, C-ter 97.2 0.26 5.6E-06 48.1 26.6 111 283-408 179-289 (319)
192 PF10037 MRP-S27: Mitochondria 97.2 0.0089 1.9E-07 59.9 13.7 123 342-479 61-186 (429)
193 PF12688 TPR_5: Tetratrico pep 97.2 0.0094 2E-07 48.3 11.4 88 574-661 7-102 (120)
194 KOG0550 Molecular chaperone (D 97.1 0.16 3.5E-06 49.3 20.8 225 428-657 166-437 (486)
195 PF05843 Suf: Suppressor of fo 97.1 0.0098 2.1E-07 57.2 13.4 127 431-560 2-135 (280)
196 PF08579 RPM2: Mitochondrial r 97.1 0.0062 1.3E-07 47.3 9.1 80 500-580 28-116 (120)
197 CHL00033 ycf3 photosystem I as 97.1 0.0086 1.9E-07 52.8 11.7 80 112-191 36-117 (168)
198 PRK15363 pathogenicity island 97.1 0.011 2.4E-07 49.7 11.2 85 155-239 44-131 (157)
199 PF14938 SNAP: Soluble NSF att 97.0 0.023 5E-07 55.0 15.1 123 116-239 40-183 (282)
200 PLN03098 LPA1 LOW PSII ACCUMUL 97.0 0.0032 6.9E-08 62.3 8.8 62 568-629 75-141 (453)
201 PF13414 TPR_11: TPR repeat; P 97.0 0.0019 4.2E-08 46.8 5.6 64 568-631 3-69 (69)
202 KOG1538 Uncharacterized conser 97.0 0.12 2.6E-06 52.9 19.4 220 60-341 612-846 (1081)
203 PF06239 ECSIT: Evolutionarily 97.0 0.0058 1.3E-07 53.9 9.1 89 208-296 44-153 (228)
204 PF13428 TPR_14: Tetratricopep 97.0 0.0017 3.7E-08 41.9 4.5 42 601-642 2-43 (44)
205 PRK10866 outer membrane biogen 96.9 0.2 4.4E-06 46.9 19.9 67 110-178 31-101 (243)
206 COG4700 Uncharacterized protei 96.9 0.049 1.1E-06 46.5 13.6 96 144-239 87-188 (251)
207 KOG1538 Uncharacterized conser 96.9 0.15 3.2E-06 52.3 19.0 41 328-371 616-656 (1081)
208 KOG2796 Uncharacterized conser 96.9 0.075 1.6E-06 48.2 15.1 129 113-241 179-316 (366)
209 KOG2114 Vacuolar assembly/sort 96.8 0.41 9E-06 51.0 22.4 175 82-272 336-516 (933)
210 PRK10803 tol-pal system protei 96.8 0.032 6.9E-07 52.7 13.6 103 533-635 144-252 (263)
211 PF13424 TPR_12: Tetratricopep 96.8 0.0024 5.3E-08 47.7 4.9 62 601-662 6-74 (78)
212 PF13371 TPR_9: Tetratricopept 96.8 0.006 1.3E-07 44.8 6.8 65 576-640 3-69 (73)
213 KOG1258 mRNA processing protei 96.8 0.84 1.8E-05 47.0 28.9 414 248-670 47-514 (577)
214 KOG2041 WD40 repeat protein [G 96.5 1.3 2.8E-05 46.3 29.0 152 259-455 747-903 (1189)
215 COG4235 Cytochrome c biogenesi 96.5 0.027 5.8E-07 52.6 10.6 97 144-240 154-256 (287)
216 PF09205 DUF1955: Domain of un 96.5 0.2 4.4E-06 40.2 13.7 140 508-666 13-152 (161)
217 COG1729 Uncharacterized protei 96.5 0.021 4.5E-07 52.6 9.3 83 579-663 152-244 (262)
218 PF13512 TPR_18: Tetratricopep 96.4 0.073 1.6E-06 44.0 11.4 89 575-663 17-128 (142)
219 PF13525 YfiO: Outer membrane 96.3 0.38 8.2E-06 43.8 17.0 64 115-178 9-74 (203)
220 COG3898 Uncharacterized membra 96.3 1.1 2.5E-05 43.4 26.8 113 294-409 97-216 (531)
221 KOG2280 Vacuolar assembly/sort 96.3 1.9 4.2E-05 45.6 28.2 111 530-656 682-792 (829)
222 KOG1130 Predicted G-alpha GTPa 96.3 0.027 5.8E-07 54.3 9.1 129 466-594 195-341 (639)
223 KOG0543 FKBP-type peptidyl-pro 96.2 0.044 9.5E-07 53.2 10.5 137 504-662 215-354 (397)
224 PF13424 TPR_12: Tetratricopep 96.2 0.0053 1.1E-07 45.9 3.6 61 569-629 6-75 (78)
225 KOG1585 Protein required for f 96.2 0.7 1.5E-05 41.8 16.8 200 432-657 33-250 (308)
226 KOG2796 Uncharacterized conser 96.2 0.43 9.3E-06 43.5 15.6 137 499-636 179-322 (366)
227 PRK11906 transcriptional regul 96.2 0.093 2E-06 52.4 12.6 142 512-657 273-430 (458)
228 COG5107 RNA14 Pre-mRNA 3'-end 96.1 1.7 3.7E-05 43.0 34.0 125 467-594 398-528 (660)
229 KOG1258 mRNA processing protei 96.0 2.4 5.2E-05 43.8 32.4 126 112-239 46-179 (577)
230 PF03704 BTAD: Bacterial trans 95.9 0.038 8.3E-07 47.3 8.1 68 602-669 64-136 (146)
231 PF08631 SPO22: Meiosis protei 95.9 1.4 3E-05 42.5 19.5 156 91-246 4-192 (278)
232 COG0457 NrfG FOG: TPR repeat [ 95.9 1.5 3.2E-05 40.9 23.9 216 444-663 37-265 (291)
233 PF13525 YfiO: Outer membrane 95.9 1.3 2.9E-05 40.3 20.1 83 315-401 113-198 (203)
234 PF12921 ATP13: Mitochondrial 95.8 0.11 2.4E-06 42.6 9.6 49 528-576 48-96 (126)
235 KOG2114 Vacuolar assembly/sort 95.8 3.6 7.8E-05 44.3 25.3 119 183-308 337-458 (933)
236 KOG2041 WD40 repeat protein [G 95.8 3.2 6.9E-05 43.6 28.7 151 160-337 748-903 (1189)
237 PLN03098 LPA1 LOW PSII ACCUMUL 95.6 0.11 2.3E-06 51.9 10.2 65 599-663 74-141 (453)
238 PF13281 DUF4071: Domain of un 95.5 2.8 6.1E-05 41.5 20.8 78 179-256 140-227 (374)
239 KOG4555 TPR repeat-containing 95.5 0.16 3.6E-06 40.6 9.0 89 577-665 52-146 (175)
240 KOG0543 FKBP-type peptidyl-pro 95.3 0.067 1.4E-06 52.0 7.6 89 576-664 216-321 (397)
241 PF10300 DUF3808: Protein of u 95.3 1.1 2.5E-05 46.7 17.3 114 546-662 247-375 (468)
242 PF04184 ST7: ST7 protein; In 95.2 1.2 2.6E-05 45.0 16.0 101 536-636 263-382 (539)
243 KOG3941 Intermediate in Toll s 95.1 0.21 4.5E-06 45.9 9.6 98 486-584 54-174 (406)
244 smart00299 CLH Clathrin heavy 95.0 1.6 3.4E-05 36.9 14.8 84 151-237 12-95 (140)
245 PF12921 ATP13: Mitochondrial 95.0 0.3 6.6E-06 40.0 9.8 93 245-355 1-96 (126)
246 KOG3941 Intermediate in Toll s 95.0 0.18 4E-06 46.2 9.1 97 200-296 54-173 (406)
247 PF03704 BTAD: Bacterial trans 95.0 0.13 2.7E-06 44.1 7.9 69 282-350 63-139 (146)
248 PF07719 TPR_2: Tetratricopept 94.9 0.079 1.7E-06 31.6 4.7 32 602-633 3-34 (34)
249 PF04053 Coatomer_WDAD: Coatom 94.7 1 2.2E-05 46.3 14.9 158 119-307 269-428 (443)
250 PF13512 TPR_18: Tetratricopep 94.7 0.91 2E-05 37.7 11.7 20 616-635 115-134 (142)
251 PF00515 TPR_1: Tetratricopept 94.7 0.071 1.5E-06 31.9 4.1 32 601-632 2-33 (34)
252 COG4105 ComL DNA uptake lipopr 94.6 3.7 7.9E-05 37.9 19.7 57 606-662 173-232 (254)
253 smart00299 CLH Clathrin heavy 94.4 2.8 6E-05 35.4 14.8 125 501-645 11-136 (140)
254 COG3118 Thioredoxin domain-con 94.3 1.6 3.4E-05 41.0 13.5 139 89-228 143-289 (304)
255 PRK11619 lytic murein transgly 94.3 9.9 0.00021 41.5 31.2 115 510-627 254-373 (644)
256 COG3118 Thioredoxin domain-con 94.3 4.9 0.00011 37.9 17.1 123 355-494 142-264 (304)
257 PF09613 HrpB1_HrpK: Bacterial 94.3 1.5 3.2E-05 37.3 12.1 110 541-655 19-130 (160)
258 PRK15331 chaperone protein Sic 94.2 0.79 1.7E-05 39.1 10.5 84 156-239 47-133 (165)
259 PF10300 DUF3808: Protein of u 94.2 2.5 5.4E-05 44.2 16.6 158 385-558 192-373 (468)
260 COG1729 Uncharacterized protei 94.1 1.1 2.3E-05 41.7 12.0 103 534-637 144-252 (262)
261 PF13428 TPR_14: Tetratricopep 94.0 0.15 3.4E-06 32.7 4.7 40 148-187 3-42 (44)
262 KOG2610 Uncharacterized conser 93.9 0.59 1.3E-05 44.2 10.0 160 508-670 114-283 (491)
263 PF02259 FAT: FAT domain; Int 93.9 7.8 0.00017 39.0 20.1 150 496-647 145-305 (352)
264 PF04053 Coatomer_WDAD: Coatom 93.8 1.1 2.4E-05 46.1 12.8 157 473-659 268-427 (443)
265 KOG1941 Acetylcholine receptor 93.7 1.2 2.6E-05 42.7 11.7 218 444-661 20-273 (518)
266 PRK11906 transcriptional regul 93.6 3.7 7.9E-05 41.5 15.4 140 481-625 273-432 (458)
267 KOG4234 TPR repeat-containing 93.5 0.28 6E-06 42.7 6.6 99 541-642 104-210 (271)
268 TIGR02561 HrpB1_HrpK type III 93.5 0.52 1.1E-05 39.2 8.0 86 580-666 22-109 (153)
269 PF09613 HrpB1_HrpK: Bacterial 93.4 0.66 1.4E-05 39.3 8.6 96 569-665 8-108 (160)
270 KOG2610 Uncharacterized conser 93.3 3 6.5E-05 39.7 13.4 155 476-634 113-283 (491)
271 PF13176 TPR_7: Tetratricopept 93.3 0.16 3.4E-06 30.9 3.6 26 636-661 1-26 (36)
272 KOG2396 HAT (Half-A-TPR) repea 93.2 11 0.00024 38.3 34.1 79 129-208 89-168 (568)
273 PF04184 ST7: ST7 protein; In 93.1 2.2 4.8E-05 43.2 13.0 54 574-627 265-322 (539)
274 KOG4555 TPR repeat-containing 93.1 0.24 5.1E-06 39.8 5.2 59 608-666 51-110 (175)
275 COG4785 NlpI Lipoprotein NlpI, 92.4 7.8 0.00017 34.6 15.4 29 635-663 238-266 (297)
276 COG3629 DnrI DNA-binding trans 92.3 0.78 1.7E-05 43.2 8.4 59 570-628 155-215 (280)
277 COG4105 ComL DNA uptake lipopr 92.1 9.8 0.00021 35.2 18.3 49 293-341 46-100 (254)
278 PF13176 TPR_7: Tetratricopept 92.0 0.28 6.2E-06 29.7 3.6 27 602-628 1-27 (36)
279 PF13181 TPR_8: Tetratricopept 91.8 0.34 7.4E-06 28.8 3.8 31 602-632 3-33 (34)
280 PF13431 TPR_17: Tetratricopep 91.8 0.26 5.7E-06 29.4 3.2 32 169-200 2-33 (34)
281 PF08631 SPO22: Meiosis protei 91.6 13 0.00029 35.7 25.3 101 431-533 85-193 (278)
282 COG4649 Uncharacterized protei 91.6 6.2 0.00013 33.9 11.9 93 387-494 100-195 (221)
283 KOG1585 Protein required for f 91.5 5.7 0.00012 36.2 12.3 162 447-625 75-252 (308)
284 KOG1941 Acetylcholine receptor 91.1 2.2 4.7E-05 41.1 9.8 185 478-662 18-234 (518)
285 KOG1920 IkappaB kinase complex 90.8 35 0.00075 39.0 23.2 156 295-495 894-1055(1265)
286 PF13170 DUF4003: Protein of u 90.6 8.5 0.00018 37.3 13.8 128 446-577 78-226 (297)
287 PF07719 TPR_2: Tetratricopept 90.3 0.5 1.1E-05 28.0 3.5 29 635-663 2-30 (34)
288 TIGR02561 HrpB1_HrpK type III 90.1 7 0.00015 32.8 10.8 66 158-223 22-88 (153)
289 KOG4648 Uncharacterized conser 89.9 0.72 1.6E-05 43.8 5.6 96 539-637 104-202 (536)
290 PF13170 DUF4003: Protein of u 89.8 5.7 0.00012 38.4 12.0 51 127-177 78-134 (297)
291 KOG1550 Extracellular protein 89.8 32 0.0007 37.0 22.0 212 445-664 308-539 (552)
292 PF07035 Mic1: Colon cancer-as 89.3 14 0.0003 32.1 12.7 100 231-338 14-115 (167)
293 COG3629 DnrI DNA-binding trans 89.1 3.8 8.2E-05 38.8 9.8 76 281-356 153-236 (280)
294 PF09205 DUF1955: Domain of un 89.1 11 0.00024 30.8 13.0 140 222-379 13-152 (161)
295 PF13174 TPR_6: Tetratricopept 89.1 0.77 1.7E-05 26.9 3.7 28 605-632 5-32 (33)
296 KOG0403 Neoplastic transformat 89.1 26 0.00057 35.1 17.6 75 350-424 512-586 (645)
297 KOG0403 Neoplastic transformat 88.9 27 0.00059 35.0 17.0 58 470-527 513-573 (645)
298 COG4649 Uncharacterized protei 88.8 15 0.00032 31.7 15.0 121 507-628 68-195 (221)
299 PF02259 FAT: FAT domain; Int 88.8 16 0.00034 36.7 15.3 69 598-666 144-216 (352)
300 COG2909 MalT ATP-dependent tra 88.7 43 0.00093 37.0 22.2 84 441-525 426-525 (894)
301 KOG4570 Uncharacterized conser 88.6 3.8 8.3E-05 38.7 9.2 98 459-561 58-164 (418)
302 KOG2066 Vacuolar assembly/sort 88.0 44 0.00095 36.3 26.8 29 382-410 506-534 (846)
303 PF00515 TPR_1: Tetratricopept 87.9 0.94 2E-05 26.8 3.5 29 635-663 2-30 (34)
304 KOG1920 IkappaB kinase complex 87.6 59 0.0013 37.3 25.0 115 470-597 912-1028(1265)
305 PF10602 RPN7: 26S proteasome 87.5 10 0.00022 33.5 11.2 59 214-272 39-99 (177)
306 PF13374 TPR_10: Tetratricopep 87.0 1.5 3.3E-05 27.3 4.3 27 602-628 4-30 (42)
307 PRK09687 putative lyase; Provi 86.9 30 0.00066 33.3 27.7 58 465-525 205-262 (280)
308 PRK09687 putative lyase; Provi 86.9 30 0.00066 33.3 25.2 121 280-409 141-262 (280)
309 PF09986 DUF2225: Uncharacteri 86.8 4.2 9.1E-05 37.2 8.5 68 601-668 119-199 (214)
310 PF00637 Clathrin: Region in C 86.5 1 2.2E-05 38.3 4.2 83 218-307 14-96 (143)
311 PF14853 Fis1_TPR_C: Fis1 C-te 86.4 2.1 4.6E-05 28.7 4.7 36 605-640 6-41 (53)
312 KOG2280 Vacuolar assembly/sort 86.3 53 0.0012 35.5 33.4 123 215-340 441-574 (829)
313 PF10602 RPN7: 26S proteasome 86.2 7.2 0.00016 34.4 9.5 60 499-558 38-99 (177)
314 COG2976 Uncharacterized protei 86.0 24 0.00052 31.2 13.6 89 540-632 97-191 (207)
315 PF07721 TPR_4: Tetratricopept 86.0 1 2.2E-05 24.8 2.6 23 636-658 3-25 (26)
316 PF13181 TPR_8: Tetratricopept 85.6 1.7 3.7E-05 25.6 3.7 28 635-662 2-29 (34)
317 KOG4648 Uncharacterized conser 85.5 2.8 6.1E-05 40.0 6.7 86 504-600 104-198 (536)
318 COG0457 NrfG FOG: TPR repeat [ 85.3 30 0.00064 31.7 27.7 197 430-632 59-268 (291)
319 PF07035 Mic1: Colon cancer-as 85.3 24 0.00052 30.6 15.3 46 470-515 93-138 (167)
320 KOG2066 Vacuolar assembly/sort 85.3 61 0.0013 35.3 26.3 101 155-258 365-467 (846)
321 TIGR02508 type_III_yscG type I 85.1 15 0.00032 28.3 8.9 86 262-351 21-106 (115)
322 COG2976 Uncharacterized protei 85.0 27 0.00058 30.9 13.1 88 154-241 97-189 (207)
323 PF13174 TPR_6: Tetratricopept 84.6 1.1 2.4E-05 26.1 2.6 28 636-663 2-29 (33)
324 PF00637 Clathrin: Region in C 84.5 0.84 1.8E-05 38.8 2.8 84 151-237 12-96 (143)
325 cd00923 Cyt_c_Oxidase_Va Cytoc 84.1 5.9 0.00013 30.2 6.5 59 129-187 25-83 (103)
326 PF13374 TPR_10: Tetratricopep 84.0 1.9 4E-05 26.9 3.7 28 635-662 3-30 (42)
327 KOG4570 Uncharacterized conser 83.9 9.9 0.00021 36.1 9.3 104 275-379 58-167 (418)
328 COG4455 ImpE Protein of avirul 83.2 2.9 6.2E-05 37.3 5.4 65 570-634 3-69 (273)
329 KOG1586 Protein required for f 83.1 20 0.00044 32.6 10.6 16 543-558 25-40 (288)
330 KOG1586 Protein required for f 83.0 36 0.00078 31.1 12.0 89 574-662 119-223 (288)
331 PF06552 TOM20_plant: Plant sp 83.0 13 0.00028 32.4 9.0 44 616-666 96-139 (186)
332 TIGR03504 FimV_Cterm FimV C-te 82.8 2.4 5.3E-05 27.0 3.6 28 638-665 3-30 (44)
333 KOG4642 Chaperone-dependent E3 82.8 5.2 0.00011 36.3 6.9 50 611-660 55-104 (284)
334 cd00923 Cyt_c_Oxidase_Va Cytoc 82.6 6.5 0.00014 30.0 6.3 62 513-576 23-84 (103)
335 KOG4234 TPR repeat-containing 82.5 21 0.00045 31.6 10.1 93 504-600 102-201 (271)
336 PF11207 DUF2989: Protein of u 82.4 8.6 0.00019 34.2 8.0 74 580-654 119-198 (203)
337 COG4455 ImpE Protein of avirul 82.3 4.6 0.0001 36.1 6.3 72 149-220 4-81 (273)
338 smart00028 TPR Tetratricopepti 82.1 2.8 6E-05 23.7 3.8 28 604-631 5-32 (34)
339 COG3947 Response regulator con 82.0 5.7 0.00012 37.2 7.0 61 602-662 281-341 (361)
340 PRK11619 lytic murein transgly 81.6 89 0.0019 34.4 39.6 243 259-533 254-512 (644)
341 KOG1464 COP9 signalosome, subu 81.1 17 0.00037 33.7 9.6 120 545-664 40-175 (440)
342 PF02284 COX5A: Cytochrome c o 81.1 11 0.00025 29.1 7.1 60 515-576 28-87 (108)
343 PF14561 TPR_20: Tetratricopep 80.4 6.2 0.00014 30.1 5.8 49 601-649 23-73 (90)
344 TIGR02508 type_III_yscG type I 80.1 20 0.00043 27.7 8.0 79 161-241 20-98 (115)
345 COG1747 Uncharacterized N-term 79.7 79 0.0017 32.6 21.6 160 427-594 63-231 (711)
346 PRK15180 Vi polysaccharide bio 79.6 76 0.0016 32.3 28.4 89 581-669 711-811 (831)
347 PF02284 COX5A: Cytochrome c o 79.5 7.6 0.00016 30.0 5.8 60 129-188 28-87 (108)
348 KOG0276 Vesicle coat complex C 79.0 40 0.00086 35.4 12.3 98 509-625 649-746 (794)
349 KOG2300 Uncharacterized conser 78.6 83 0.0018 32.3 26.3 118 543-663 334-474 (629)
350 PF04190 DUF410: Protein of un 78.0 65 0.0014 30.6 18.3 158 92-275 2-170 (260)
351 KOG0276 Vesicle coat complex C 77.9 29 0.00063 36.3 11.0 165 108-307 578-747 (794)
352 PRK10941 hypothetical protein; 77.3 14 0.00031 35.1 8.4 60 604-663 185-244 (269)
353 PF10345 Cohesin_load: Cohesin 77.1 1.2E+02 0.0026 33.3 38.3 143 164-307 39-205 (608)
354 KOG1308 Hsp70-interacting prot 77.0 0.79 1.7E-05 43.7 0.0 59 609-667 157-215 (377)
355 PF04097 Nic96: Nup93/Nic96; 76.9 1.2E+02 0.0026 33.2 17.9 84 472-558 264-353 (613)
356 PRK15180 Vi polysaccharide bio 76.6 32 0.0007 34.8 10.7 127 504-634 296-425 (831)
357 KOG0545 Aryl-hydrocarbon recep 76.3 27 0.00058 32.1 9.2 90 576-665 186-295 (329)
358 COG4785 NlpI Lipoprotein NlpI, 75.5 63 0.0014 29.2 19.9 87 359-460 77-163 (297)
359 COG1747 Uncharacterized N-term 74.0 1.1E+02 0.0025 31.6 21.4 174 463-643 63-248 (711)
360 smart00386 HAT HAT (Half-A-TPR 73.6 8 0.00017 22.1 3.9 30 614-643 1-30 (33)
361 PF11207 DUF2989: Protein of u 73.1 24 0.00051 31.5 8.0 70 549-620 123-198 (203)
362 PF08311 Mad3_BUB1_I: Mad3/BUB 72.8 31 0.00068 28.4 8.4 42 618-659 81-124 (126)
363 PF10579 Rapsyn_N: Rapsyn N-te 72.8 9.1 0.0002 28.0 4.5 46 545-590 19-65 (80)
364 COG2909 MalT ATP-dependent tra 70.3 1.9E+02 0.004 32.4 28.0 96 388-494 422-525 (894)
365 PF07163 Pex26: Pex26 protein; 70.2 29 0.00063 32.6 8.2 88 116-203 88-181 (309)
366 cd08819 CARD_MDA5_2 Caspase ac 70.1 31 0.00067 25.9 6.8 65 165-230 21-85 (88)
367 smart00028 TPR Tetratricopepti 69.9 7.7 0.00017 21.6 3.4 29 635-663 2-30 (34)
368 PF13929 mRNA_stabil: mRNA sta 69.7 1.1E+02 0.0023 29.3 14.3 59 277-335 198-261 (292)
369 KOG1550 Extracellular protein 69.5 1.7E+02 0.0037 31.6 20.5 177 97-278 229-429 (552)
370 PF09477 Type_III_YscG: Bacter 69.3 54 0.0012 25.8 8.3 86 261-350 21-106 (116)
371 PF09477 Type_III_YscG: Bacter 69.1 54 0.0012 25.8 8.1 80 160-241 20-99 (116)
372 PF13762 MNE1: Mitochondrial s 69.0 40 0.00086 28.4 8.1 79 82-160 41-129 (145)
373 KOG0551 Hsp90 co-chaperone CNS 69.0 25 0.00054 33.9 7.7 90 571-660 84-179 (390)
374 KOG2063 Vacuolar assembly/sort 68.9 2.1E+02 0.0046 32.5 18.5 130 113-257 506-637 (877)
375 KOG3364 Membrane protein invol 68.5 19 0.00042 29.6 5.9 73 565-637 29-108 (149)
376 PF08311 Mad3_BUB1_I: Mad3/BUB 67.6 9.6 0.00021 31.4 4.3 92 13-104 17-123 (126)
377 TIGR03504 FimV_Cterm FimV C-te 67.5 12 0.00027 23.9 3.8 25 503-527 5-29 (44)
378 COG0790 FOG: TPR repeat, SEL1 67.5 1.2E+02 0.0027 29.3 16.6 85 442-530 53-146 (292)
379 PF12862 Apc5: Anaphase-promot 66.6 19 0.00041 27.7 5.6 52 611-662 9-69 (94)
380 PF13762 MNE1: Mitochondrial s 66.4 80 0.0017 26.7 10.2 79 284-362 42-130 (145)
381 KOG4642 Chaperone-dependent E3 66.1 65 0.0014 29.7 9.2 81 476-558 20-104 (284)
382 KOG3364 Membrane protein invol 66.0 41 0.00089 27.8 7.3 67 597-663 29-100 (149)
383 PF06552 TOM20_plant: Plant sp 65.3 9.9 0.00021 33.1 4.0 47 616-662 51-108 (186)
384 PF04190 DUF410: Protein of un 65.3 1.3E+02 0.0028 28.7 18.5 105 293-408 2-117 (260)
385 PF04097 Nic96: Nup93/Nic96; 64.5 2.2E+02 0.0049 31.2 21.1 31 533-567 501-536 (613)
386 cd08819 CARD_MDA5_2 Caspase ac 63.2 38 0.00083 25.5 6.1 65 65-130 21-85 (88)
387 PF09670 Cas_Cas02710: CRISPR- 63.2 1.1E+02 0.0024 31.1 11.7 18 509-526 143-160 (379)
388 KOG2908 26S proteasome regulat 62.9 1.1E+02 0.0023 29.9 10.5 78 576-653 83-176 (380)
389 KOG4507 Uncharacterized conser 62.6 27 0.0006 36.3 7.1 95 545-642 620-718 (886)
390 PF07163 Pex26: Pex26 protein; 62.4 79 0.0017 29.9 9.3 85 218-304 90-181 (309)
391 KOG2471 TPR repeat-containing 61.5 2E+02 0.0044 29.7 13.8 42 606-647 341-382 (696)
392 smart00777 Mad3_BUB1_I Mad3/BU 61.3 64 0.0014 26.5 7.8 40 619-658 82-123 (125)
393 KOG0376 Serine-threonine phosp 60.9 6.6 0.00014 39.6 2.6 101 539-642 11-114 (476)
394 COG4976 Predicted methyltransf 59.9 18 0.0004 32.8 4.8 52 612-663 7-58 (287)
395 PF04910 Tcf25: Transcriptiona 59.5 2E+02 0.0043 29.0 14.8 64 599-662 99-167 (360)
396 KOG1464 COP9 signalosome, subu 59.2 1.6E+02 0.0034 27.7 17.3 230 384-628 68-331 (440)
397 KOG3824 Huntingtin interacting 58.3 20 0.00043 34.0 4.9 59 579-637 127-187 (472)
398 KOG4077 Cytochrome c oxidase, 58.2 55 0.0012 26.6 6.6 58 516-575 68-125 (149)
399 smart00777 Mad3_BUB1_I Mad3/BU 58.1 19 0.00041 29.5 4.3 42 63-104 80-123 (125)
400 KOG4507 Uncharacterized conser 58.1 51 0.0011 34.5 8.1 132 529-663 568-705 (886)
401 PF14863 Alkyl_sulf_dimr: Alky 57.6 51 0.0011 27.7 6.9 64 584-650 57-120 (141)
402 PF11846 DUF3366: Domain of un 57.2 36 0.00079 30.6 6.6 36 596-631 140-175 (193)
403 PF14853 Fis1_TPR_C: Fis1 C-te 57.0 21 0.00045 24.0 3.6 29 636-664 3-31 (53)
404 KOG4077 Cytochrome c oxidase, 56.4 65 0.0014 26.2 6.7 53 586-638 70-122 (149)
405 KOG4279 Serine/threonine prote 56.3 1.8E+02 0.004 31.7 11.8 182 448-633 181-399 (1226)
406 PF10366 Vps39_1: Vacuolar sor 55.5 1E+02 0.0022 24.5 8.0 28 212-239 40-67 (108)
407 PF11846 DUF3366: Domain of un 55.3 45 0.00099 29.9 6.9 58 537-594 113-170 (193)
408 COG3947 Response regulator con 54.1 2.1E+02 0.0045 27.5 13.9 60 349-408 281-340 (361)
409 PF07575 Nucleopor_Nup85: Nup8 53.7 3.3E+02 0.0071 29.6 15.6 24 112-136 150-173 (566)
410 PF10255 Paf67: RNA polymerase 53.2 70 0.0015 32.4 8.2 27 634-660 164-190 (404)
411 PF12862 Apc5: Anaphase-promot 51.6 57 0.0012 25.1 6.0 51 579-629 9-70 (94)
412 PF13929 mRNA_stabil: mRNA sta 51.5 2.3E+02 0.005 27.2 20.3 65 560-624 194-262 (292)
413 KOG4567 GTPase-activating prot 51.5 1.8E+02 0.0039 28.0 9.8 44 231-274 263-306 (370)
414 PF02184 HAT: HAT (Half-A-TPR) 51.3 41 0.00089 19.7 3.7 27 615-642 2-28 (32)
415 PHA02875 ankyrin repeat protei 51.2 2.9E+02 0.0064 28.4 17.6 54 290-347 174-230 (413)
416 PF11848 DUF3368: Domain of un 50.8 60 0.0013 21.2 5.0 34 507-540 12-45 (48)
417 PF10345 Cohesin_load: Cohesin 50.5 3.8E+02 0.0082 29.5 38.3 14 441-454 415-428 (608)
418 PRK13800 putative oxidoreducta 50.2 4.7E+02 0.01 30.4 27.3 79 244-326 633-712 (897)
419 KOG2063 Vacuolar assembly/sort 50.1 4.4E+02 0.0095 30.1 17.2 26 315-340 507-532 (877)
420 PF04090 RNA_pol_I_TF: RNA pol 49.7 2E+02 0.0043 25.9 10.0 36 497-533 41-76 (199)
421 KOG0991 Replication factor C, 49.4 2.2E+02 0.0047 26.3 12.4 126 384-533 133-274 (333)
422 PRK13800 putative oxidoreducta 48.7 5E+02 0.011 30.3 26.3 93 279-375 787-880 (897)
423 PF11848 DUF3368: Domain of un 48.5 56 0.0012 21.3 4.6 31 258-288 14-44 (48)
424 KOG0687 26S proteasome regulat 48.2 2.7E+02 0.0059 27.1 11.6 93 534-628 106-209 (393)
425 KOG3807 Predicted membrane pro 47.4 2.8E+02 0.006 27.0 14.7 21 618-638 380-400 (556)
426 KOG0890 Protein kinase of the 47.0 7.4E+02 0.016 31.8 34.1 105 533-641 1671-1796(2382)
427 PRK10941 hypothetical protein; 46.6 1.8E+02 0.0038 27.9 9.5 68 571-638 184-253 (269)
428 PF04910 Tcf25: Transcriptiona 46.2 3.3E+02 0.0071 27.5 18.0 31 463-493 37-67 (360)
429 PRK13342 recombination factor 46.1 3.6E+02 0.0077 27.9 15.2 42 214-255 230-274 (413)
430 PF10366 Vps39_1: Vacuolar sor 45.8 1.3E+02 0.0028 23.9 7.2 27 113-139 41-67 (108)
431 PF14561 TPR_20: Tetratricopep 45.3 1.4E+02 0.003 22.8 7.6 40 169-208 11-50 (90)
432 KOG4279 Serine/threonine prote 45.2 1.4E+02 0.0031 32.5 9.1 116 483-601 180-321 (1226)
433 PF07720 TPR_3: Tetratricopept 45.0 69 0.0015 19.4 4.6 14 609-622 10-23 (36)
434 PRK09857 putative transposase; 44.0 1.3E+02 0.0028 29.2 8.4 65 603-667 209-273 (292)
435 KOG0687 26S proteasome regulat 42.7 3.3E+02 0.0071 26.7 10.2 127 527-659 65-206 (393)
436 PHA03100 ankyrin repeat protei 42.3 3.9E+02 0.0085 28.1 12.7 13 192-204 117-129 (480)
437 PRK10564 maltose regulon perip 42.2 44 0.00096 32.0 4.7 41 314-354 259-299 (303)
438 PRK12798 chemotaxis protein; R 42.1 3.9E+02 0.0085 27.2 21.6 185 478-665 124-326 (421)
439 KOG2908 26S proteasome regulat 41.7 2.3E+02 0.005 27.8 9.1 79 471-549 80-174 (380)
440 KOG2422 Uncharacterized conser 41.6 4.6E+02 0.01 27.9 11.8 161 509-672 250-453 (665)
441 PF10516 SHNi-TPR: SHNi-TPR; 41.3 56 0.0012 20.1 3.5 28 635-662 2-29 (38)
442 PHA02875 ankyrin repeat protei 41.1 4.2E+02 0.009 27.2 15.7 42 269-310 184-228 (413)
443 TIGR02710 CRISPR-associated pr 40.5 4.1E+02 0.0088 26.9 12.5 54 504-557 137-196 (380)
444 PF04090 RNA_pol_I_TF: RNA pol 39.9 81 0.0017 28.3 5.7 88 602-689 43-131 (199)
445 COG4976 Predicted methyltransf 39.2 61 0.0013 29.6 4.7 56 578-633 5-62 (287)
446 KOG2034 Vacuolar sorting prote 39.1 6.2E+02 0.013 28.6 23.9 53 186-238 364-416 (911)
447 PF14669 Asp_Glu_race_2: Putat 39.1 2.8E+02 0.0061 24.7 13.9 25 251-275 137-161 (233)
448 KOG3636 Uncharacterized conser 38.4 4.5E+02 0.0097 26.8 13.2 83 425-509 178-272 (669)
449 PF11663 Toxin_YhaV: Toxin wit 38.3 38 0.00083 27.9 3.1 33 221-255 105-137 (140)
450 PF11768 DUF3312: Protein of u 38.0 4.3E+02 0.0094 28.0 11.1 56 470-525 412-472 (545)
451 PF10579 Rapsyn_N: Rapsyn N-te 37.9 94 0.002 22.9 4.7 45 612-656 18-65 (80)
452 PF14689 SPOB_a: Sensor_kinase 37.9 32 0.0007 24.0 2.4 23 604-626 27-49 (62)
453 cd00280 TRFH Telomeric Repeat 37.7 1.6E+02 0.0036 25.9 6.9 26 576-601 119-144 (200)
454 KOG3807 Predicted membrane pro 37.1 3.6E+02 0.0079 26.2 9.6 20 288-307 282-301 (556)
455 KOG0292 Vesicle coat complex C 37.1 59 0.0013 35.9 5.1 44 580-626 655-698 (1202)
456 KOG2581 26S proteasome regulat 37.1 3.6E+02 0.0077 27.3 9.8 137 497-633 124-280 (493)
457 PRK10564 maltose regulon perip 36.7 62 0.0014 31.0 4.7 35 214-248 260-294 (303)
458 KOG1114 Tripeptidyl peptidase 36.4 7.1E+02 0.015 28.5 14.2 57 531-587 1230-1286(1304)
459 PF11123 DNA_Packaging_2: DNA 35.8 1.2E+02 0.0027 21.8 4.8 33 445-479 12-44 (82)
460 PF13934 ELYS: Nuclear pore co 34.5 3.8E+02 0.0082 24.8 14.4 105 499-613 78-185 (226)
461 PF04781 DUF627: Protein of un 34.2 2.4E+02 0.0053 22.5 7.2 42 618-659 62-103 (111)
462 PF09670 Cas_Cas02710: CRISPR- 34.0 5.2E+02 0.011 26.3 11.2 56 119-175 139-198 (379)
463 cd00280 TRFH Telomeric Repeat 34.0 1.5E+02 0.0032 26.2 6.1 48 604-652 115-162 (200)
464 PF11663 Toxin_YhaV: Toxin wit 33.6 63 0.0014 26.7 3.6 33 122-156 106-138 (140)
465 KOG0686 COP9 signalosome, subu 33.2 5.3E+02 0.012 26.2 12.2 171 182-355 152-352 (466)
466 KOG2581 26S proteasome regulat 32.9 5.4E+02 0.012 26.1 14.6 130 465-599 123-279 (493)
467 KOG0376 Serine-threonine phosp 32.8 89 0.0019 32.0 5.3 104 504-612 11-117 (476)
468 PF12968 DUF3856: Domain of Un 32.7 2.7E+02 0.0059 22.6 8.7 60 601-660 56-126 (144)
469 COG5159 RPN6 26S proteasome re 32.6 4.5E+02 0.0098 25.1 17.8 132 118-249 10-167 (421)
470 PF11768 DUF3312: Protein of u 32.5 4E+02 0.0087 28.2 9.9 57 285-341 412-473 (545)
471 COG5108 RPO41 Mitochondrial DN 32.5 2.1E+02 0.0046 30.8 7.9 74 502-579 33-114 (1117)
472 PF14689 SPOB_a: Sensor_kinase 32.1 85 0.0019 21.9 3.8 46 616-662 6-51 (62)
473 KOG0890 Protein kinase of the 32.1 1.2E+03 0.027 30.0 33.0 65 600-666 1670-1734(2382)
474 TIGR01503 MthylAspMut_E methyl 31.3 6.1E+02 0.013 26.3 11.2 49 125-176 68-116 (480)
475 PF12796 Ank_2: Ankyrin repeat 31.2 1.4E+02 0.0031 22.1 5.4 13 192-204 6-18 (89)
476 COG5187 RPN7 26S proteasome re 31.1 4.8E+02 0.01 25.0 9.4 28 567-594 114-141 (412)
477 KOG4814 Uncharacterized conser 31.1 1.7E+02 0.0036 31.4 7.0 58 604-661 398-455 (872)
478 COG4259 Uncharacterized protei 30.9 1.7E+02 0.0036 22.8 5.1 43 596-640 70-112 (121)
479 COG5191 Uncharacterized conser 30.7 1.2E+02 0.0025 29.2 5.4 82 562-643 101-185 (435)
480 PRK14962 DNA polymerase III su 30.5 6.7E+02 0.015 26.5 12.7 23 223-245 255-277 (472)
481 COG2912 Uncharacterized conser 30.3 1.9E+02 0.0041 27.4 6.7 55 608-662 189-243 (269)
482 PF06957 COPI_C: Coatomer (COP 30.2 4E+02 0.0086 27.4 9.4 39 595-633 293-333 (422)
483 COG4259 Uncharacterized protei 29.5 2.7E+02 0.0059 21.6 6.1 26 634-659 72-97 (121)
484 cd08326 CARD_CASP9 Caspase act 29.2 2.5E+02 0.0054 21.1 6.6 62 450-516 19-80 (84)
485 KOG2422 Uncharacterized conser 29.1 7.4E+02 0.016 26.5 13.8 49 443-491 251-309 (665)
486 PF11817 Foie-gras_1: Foie gra 29.0 2.2E+02 0.0048 26.8 7.2 54 606-659 184-243 (247)
487 COG5187 RPN7 26S proteasome re 28.5 2E+02 0.0044 27.4 6.4 67 599-665 114-186 (412)
488 PF13934 ELYS: Nuclear pore co 28.1 4.9E+02 0.011 24.1 17.2 85 537-627 81-167 (226)
489 PF15015 NYD-SP12_N: Spermatog 27.9 1.2E+02 0.0026 30.5 5.1 29 606-634 234-262 (569)
490 KOG1308 Hsp70-interacting prot 27.9 78 0.0017 30.9 3.8 83 508-594 125-208 (377)
491 COG0735 Fur Fe2+/Zn2+ uptake r 27.6 3.4E+02 0.0074 23.0 7.4 65 196-260 5-69 (145)
492 KOG0889 Histone acetyltransfer 27.4 1.7E+03 0.037 30.3 21.0 398 217-646 2420-2858(3550)
493 PRK11639 zinc uptake transcrip 27.4 2.9E+02 0.0062 24.2 7.1 59 238-297 18-76 (169)
494 PRK09462 fur ferric uptake reg 27.3 3.9E+02 0.0084 22.7 8.1 60 236-296 7-67 (148)
495 PRK11639 zinc uptake transcrip 27.2 3.2E+02 0.0069 23.9 7.4 47 317-363 30-76 (169)
496 KOG1811 Predicted Zn2+-binding 27.1 4.5E+02 0.0097 28.0 9.1 106 571-679 559-665 (1141)
497 PF12926 MOZART2: Mitotic-spin 26.7 2.8E+02 0.0061 20.9 7.4 41 267-307 29-69 (88)
498 PF09454 Vps23_core: Vps23 cor 26.4 1.8E+02 0.004 20.5 4.6 52 426-479 4-55 (65)
499 KOG2659 LisH motif-containing 26.3 5.2E+02 0.011 23.9 9.9 100 560-659 18-128 (228)
500 cd07153 Fur_like Ferric uptake 26.2 1.4E+02 0.003 24.0 4.7 46 117-162 6-51 (116)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.8e-95 Score=810.24 Aligned_cols=655 Identities=36% Similarity=0.671 Sum_probs=638.2
Q ss_pred CCCChHHHHhhhcC-------CCchhHHHHHhhc---cCchhHHHHHHHHHHhCCCCch-hhhHHHHHHhcCCChHHHHH
Q 040394 33 TQHELDQTFASFHS-------LPSIPCLNLLGLC---KSTGSLKAFHALLIVDGLTNDK-CNTKLVSMYGSFGHVKYARS 101 (691)
Q Consensus 33 ~~~~~~~a~~~~~~-------~~~~~~~~ll~~~---~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~ 101 (691)
..+.+++|..+|.. |+..++..++..| +.+..+..++..+.+.++.++. +++.++..|++.|+++.|.+
T Consensus 63 ~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~ 142 (857)
T PLN03077 63 SHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWY 142 (857)
T ss_pred hCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHH
Confidence 56788888888876 6667788888888 6788899999999999988888 99999999999999999999
Q ss_pred HhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCC-Ch
Q 040394 102 VFDSMPNPDFYSFQVMIRWYFLNDLYKDIVEFYKCMRKRLKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGP-DS 180 (691)
Q Consensus 102 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~ 180 (691)
+|++|++||..+||.++.+|++.|++++|+++|++|...|+.||..||+.++++|++.++++.+.+++..+.+.|.+ |.
T Consensus 143 ~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 222 (857)
T PLN03077 143 VFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDV 222 (857)
T ss_pred HHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999976 99
Q ss_pred hHHHHHHHHhHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC
Q 040394 181 FVLTGLVDMYAKCRDIGSSRQVFDETLDKNVVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLR 260 (691)
Q Consensus 181 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~ 260 (691)
.+++.|+.+|+++|++++|.++|++|.+||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|
T Consensus 223 ~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g 302 (857)
T PLN03077 223 DVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLG 302 (857)
T ss_pred chHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHHHHhhH
Q 040394 261 ALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNIRDARSVFDELCSIDLVSWTAMIVGYTQSGYPDKALKLFTDKKW 340 (691)
Q Consensus 261 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 340 (691)
+++.+.+++..|.+.|+.||..+|+.||.+|++.|++++|.++|++|..||..+||++|.+|++.|++++|+++|++|.+
T Consensus 303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~ 382 (857)
T PLN03077 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQ 382 (857)
T ss_pred ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCC-chhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHH
Q 040394 341 ADFFPNHVTIASVLSASAQLGNLNMGRMVHSLGIRLGLE-DYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSII 419 (691)
Q Consensus 341 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li 419 (691)
.|+.||..||+.++.+|++.|+++.|.++++.+.+.|.. +..+++.++++|++.|++++|.++|++|.++|+++||++|
T Consensus 383 ~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi 462 (857)
T PLN03077 383 DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSII 462 (857)
T ss_pred hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHH
Confidence 999999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HhhhC----------------CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHH
Q 040394 420 SGLDD----------------NVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQ 483 (691)
Q Consensus 420 ~~~~~----------------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 483 (691)
.++.+ ++.||..||+.++.+|++.|+++.+.+++..+.+.|+ .++..++++++++|+++|+++
T Consensus 463 ~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~-~~~~~~~naLi~~y~k~G~~~ 541 (857)
T PLN03077 463 AGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGI-GFDGFLPNALLDLYVRCGRMN 541 (857)
T ss_pred HHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCC-CccceechHHHHHHHHcCCHH
Confidence 99865 6899999999999999999999999999999999998 999999999999999999999
Q ss_pred HHHHHHHhcccCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcC
Q 040394 484 SARMVFDAMREKNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFK 563 (691)
Q Consensus 484 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~ 563 (691)
+|.++|+.+ .+|..+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|
T Consensus 542 ~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~g 620 (857)
T PLN03077 542 YAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYS 620 (857)
T ss_pred HHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhC
Confidence 999999999 8999999999999999999999999999999999999999999999999999999999999999976889
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 040394 564 FVPSMKHYVCMVDLLARAGRLEEALEFMENMPIEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNL 643 (691)
Q Consensus 564 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 643 (691)
+.|+..+|++++++|++.|++++|.+++++|+.+||..+|++|+.+|..+|+.+.++...+++++++|+++.+|..++++
T Consensus 621 i~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ 700 (857)
T PLN03077 621 ITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNL 700 (857)
T ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCcHHHHHHHHHHHhCCCccCCCeeEEEeCCeeeEEeeeccc
Q 040394 644 YASDGRWIRVNQVRELMKQRGLSKSPGCSLVDLDIANDFSFSRVVS 689 (691)
Q Consensus 644 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (691)
|...|+|++|.++.+.|++.|++++||++|++++++.|.|..|+.+
T Consensus 701 ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~ 746 (857)
T PLN03077 701 YADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDES 746 (857)
T ss_pred HHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCC
Confidence 9999999999999999999999999999999999999999999865
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1e-74 Score=647.37 Aligned_cols=556 Identities=26% Similarity=0.460 Sum_probs=531.7
Q ss_pred CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCC-ChhHHHHH
Q 040394 108 NPDFYSFQVMIRWYFLNDLYKDIVEFYKCMRKRLKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGP-DSFVLTGL 186 (691)
Q Consensus 108 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l 186 (691)
.++..++|.++.+|++.|++++|..+|++|.+.|++|+..+|..++++|.+.+..+.+..++..+.+.++. +...++.|
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999976 99999999
Q ss_pred HHHhHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHH
Q 040394 187 VDMYAKCRDIGSSRQVFDETLDKNVVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRALHQGK 266 (691)
Q Consensus 187 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~ 266 (691)
+.+|++.|+++.|.++|++|.+||..+||.+|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCc
Q 040394 267 WLHGYILKIGIEINSHLVTALLDMYVKCGNIRDARSVFDELCSIDLVSWTAMIVGYTQSGYPDKALKLFTDKKWADFFPN 346 (691)
Q Consensus 267 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 346 (691)
+++..|.+.|+.||..+++.||.+|+++|++++|.++|++|..+|.++||++|.+|++.|++++|+++|++|...|+.||
T Consensus 208 ~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd 287 (857)
T PLN03077 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287 (857)
T ss_pred HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCC-chhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhC-
Q 040394 347 HVTIASVLSASAQLGNLNMGRMVHSLGIRLGLE-DYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDD- 424 (691)
Q Consensus 347 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~- 424 (691)
..||+.++.+|+..|+++.|.+++..+.+.|.. +..+|+.++.+|++.|++++|.++|++|..+|.++||++|.+|.+
T Consensus 288 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~ 367 (857)
T PLN03077 288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKN 367 (857)
T ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhC
Confidence 999999999999999999999999999999998 999999999999999999999999999999999999999999977
Q ss_pred ----------------CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 040394 425 ----------------NVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMV 488 (691)
Q Consensus 425 ----------------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 488 (691)
|+.||..||+.++.+|++.|+++.|.++++.+.+.|. .++..+++.|+++|++.|++++|.++
T Consensus 368 g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~-~~~~~~~n~Li~~y~k~g~~~~A~~v 446 (857)
T PLN03077 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGL-ISYVVVANALIEMYSKCKCIDKALEV 446 (857)
T ss_pred CCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCC-CcchHHHHHHHHHHHHcCCHHHHHHH
Confidence 8999999999999999999999999999999999998 99999999999999999999999999
Q ss_pred HHhcccCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCCh
Q 040394 489 FDAMREKNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSM 568 (691)
Q Consensus 489 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~ 568 (691)
|++|.++|..+|+++|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+ .+.|+.+|.
T Consensus 447 f~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~-~~~g~~~~~ 524 (857)
T PLN03077 447 FHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHV-LRTGIGFDG 524 (857)
T ss_pred HHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHH-HHhCCCccc
Confidence 9999999999999999999999999999999999986 59999999999999999999999999999999 556999999
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCchhHHHHHHHHHh
Q 040394 569 KHYVCMVDLLARAGRLEEALEFMENMPIEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLE--LHPDKACYYVLVSNLYAS 646 (691)
Q Consensus 569 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~ 646 (691)
.++++|+++|+++|++++|.++|+.+ .||..+|++++.+|.+.|+.++|.++|++|.+ ..|+ ..+|..+..+|.+
T Consensus 525 ~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~ 601 (857)
T PLN03077 525 FLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSR 601 (857)
T ss_pred eechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhh
Confidence 99999999999999999999999888 78889999999999999999999999998887 5666 6677777788899
Q ss_pred CCCcHHHHHHHHHHH-hCCCccCC
Q 040394 647 DGRWIRVNQVRELMK-QRGLSKSP 669 (691)
Q Consensus 647 ~g~~~~A~~~~~~~~-~~g~~~~~ 669 (691)
.|++++|.++|+.|. +.|+.|+.
T Consensus 602 ~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 602 SGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred cChHHHHHHHHHHHHHHhCCCCch
Confidence 999999999999998 67887654
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.9e-74 Score=625.30 Aligned_cols=498 Identities=30% Similarity=0.555 Sum_probs=474.5
Q ss_pred CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCC-ChhHHHH
Q 040394 108 NPDFYSFQVMIRWYFLNDLYKDIVEFYKCMRKRL-KEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGP-DSFVLTG 185 (691)
Q Consensus 108 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~ 185 (691)
.++..+|+.++.++.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++.+.+.+++..|.+.|.. |..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3577799999999999999999999999999864 7899999999999999999999999999999999965 9999999
Q ss_pred HHHHhHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhH
Q 040394 186 LVDMYAKCRDIGSSRQVFDETLDKNVVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRALHQG 265 (691)
Q Consensus 186 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a 265 (691)
|+.+|++.|++++|.++|++|.+||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHHHHhhHCCCCC
Q 040394 266 KWLHGYILKIGIEINSHLVTALLDMYVKCGNIRDARSVFDELCSIDLVSWTAMIVGYTQSGYPDKALKLFTDKKWADFFP 345 (691)
Q Consensus 266 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 345 (691)
.+++..+.+.|+.||..+|+.||++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|...|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999886655
Q ss_pred cHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCC
Q 040394 346 NHVTIASVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDN 425 (691)
Q Consensus 346 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 425 (691)
|..||
T Consensus 324 d~~t~--------------------------------------------------------------------------- 328 (697)
T PLN03081 324 DQFTF--------------------------------------------------------------------------- 328 (697)
T ss_pred CHHHH---------------------------------------------------------------------------
Confidence 55555
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHhHHHHHHH
Q 040394 426 VSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMREKNTVTWSAMIG 505 (691)
Q Consensus 426 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 505 (691)
+.++.+|++.|+++.|.+++..|.+.|+ +++..++++|+++|+++|++++|.++|++|.++|+.+||+||.
T Consensus 329 --------~~ll~a~~~~g~~~~a~~i~~~m~~~g~-~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~ 399 (697)
T PLN03081 329 --------SIMIRIFSRLALLEHAKQAHAGLIRTGF-PLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIA 399 (697)
T ss_pred --------HHHHHHHHhccchHHHHHHHHHHHHhCC-CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHH
Confidence 5555555666666667777777777887 8999999999999999999999999999999999999999999
Q ss_pred HHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChH
Q 040394 506 GYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLE 585 (691)
Q Consensus 506 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 585 (691)
+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.++.|+.|+..+|+.++++|++.|+++
T Consensus 400 ~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~ 479 (697)
T PLN03081 400 GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479 (697)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHH
Confidence 99999999999999999999999999999999999999999999999999999878899999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCCC
Q 040394 586 EALEFMENMPIEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRGL 665 (691)
Q Consensus 586 ~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 665 (691)
+|.+++++|+.+|+..+|++|+.+|..+|+++.|..+++++.+..|++...|..++++|.+.|+|++|.++++.|.+.|+
T Consensus 480 eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 480 EAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCeeEEEeCCeeeEEeeeccc
Q 040394 666 SKSPGCSLVDLDIANDFSFSRVVS 689 (691)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~ 689 (691)
.+.||++|++++++.|+|+.|+.+
T Consensus 560 ~k~~g~s~i~~~~~~~~f~~~d~~ 583 (697)
T PLN03081 560 SMHPACTWIEVKKQDHSFFSGDRL 583 (697)
T ss_pred ccCCCeeEEEECCeEEEEccCCCC
Confidence 999999999999999999999764
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.8e-67 Score=572.02 Aligned_cols=528 Identities=16% Similarity=0.187 Sum_probs=486.1
Q ss_pred CCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCC-C-ChhHHHHHHHHhHhcCChHHHHHHHhccCCCChhhHHHHHH
Q 040394 142 KEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGG-P-DSFVLTGLVDMYAKCRDIGSSRQVFDETLDKNVVSWTSMIA 219 (691)
Q Consensus 142 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 219 (691)
..++...|..++..+++.|++++|.++|++|.+.|. + +..+++.++..|.+.|.+++|..+|+.|..||..+|+.+|.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 456778899999999999999999999999999984 3 88888999999999999999999999999999999999999
Q ss_pred HHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHH
Q 040394 220 GYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNIRD 299 (691)
Q Consensus 220 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 299 (691)
+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc----CCCChhHHHHHHHHHHhcCCchhHHHHHHHhhH--CCCCCcHHHHHHHHHHHhcCCChhhHHHHHHHH
Q 040394 300 ARSVFDEL----CSIDLVSWTAMIVGYTQSGYPDKALKLFTDKKW--ADFFPNHVTIASVLSASAQLGNLNMGRMVHSLG 373 (691)
Q Consensus 300 A~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 373 (691)
|.++|++| ..||..+|+.||.+|++.|++++|.++|++|.. .|+.||..||+.+|.+|++.|++++|.++++.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999 568999999999999999999999999999986 689999999999999999999999999999999
Q ss_pred HHhCCC-chhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 040394 374 IRLGLE-DYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGSSL 452 (691)
Q Consensus 374 ~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 452 (691)
.+.++. +..+|+.++.+|++.|++++|.++|++|.+. |+.||..||+.++.+|++.|++++|.++
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~--------------Gv~PD~~TynsLI~a~~k~G~~eeA~~l 671 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK--------------GVKPDEVFFSALVDVAGHAGDLDKAFEI 671 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------------CCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 999988 9999999999999999999999999999988 8999999999999999999999999999
Q ss_pred HHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc----cCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCC
Q 040394 453 HAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMR----EKNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEV 528 (691)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 528 (691)
++.|.+.|+ +|+..+|+.++.+|++.|++++|.++|++|. .||..+|++||.+|++.|++++|.++|++|.+.|+
T Consensus 672 ~~eM~k~G~-~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi 750 (1060)
T PLN03218 672 LQDARKQGI-KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL 750 (1060)
T ss_pred HHHHHHcCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 999999998 9999999999999999999999999999996 58999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHh----c-------------------CChH
Q 040394 529 QPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLAR----A-------------------GRLE 585 (691)
Q Consensus 529 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~-------------------g~~~ 585 (691)
.||..||+.++.+|++.|++++|.+++++| .+.|+.||..+|++++..|.+ + +..+
T Consensus 751 ~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M-~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~ 829 (1060)
T PLN03218 751 CPNTITYSILLVASERKDDADVGLDLLSQA-KEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTS 829 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHH
Confidence 999999999999999999999999999999 666999999999999876432 2 2346
Q ss_pred HHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHH
Q 040394 586 EALEFMENM---PIEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLE-LHPDKACYYVLVSNLYASDGRWIRVNQVRELMK 661 (691)
Q Consensus 586 ~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 661 (691)
+|+.+|++| ++.||..+|+.++.+++..++.+.+..+++.+.. -.+.+..+|..+...+.+ ..++|..++++|.
T Consensus 830 ~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~--~~~~A~~l~~em~ 907 (1060)
T PLN03218 830 WALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGE--YDPRAFSLLEEAA 907 (1060)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhcc--ChHHHHHHHHHHH
Confidence 799999999 8999999999999888888999998888887654 344557788888887732 2368999999999
Q ss_pred hCCCccCCCeeEEEeCCeeeEEeeec
Q 040394 662 QRGLSKSPGCSLVDLDIANDFSFSRV 687 (691)
Q Consensus 662 ~~g~~~~~~~~~~~~~~~~~~~~~~~ 687 (691)
+.|+.|+....-.....+++++..|.
T Consensus 908 ~~Gi~p~~~~~~~~~~~d~~~~~~~a 933 (1060)
T PLN03218 908 SLGVVPSVSFKKSPIVIDAEELPVFA 933 (1060)
T ss_pred HcCCCCCcccccCceEEEcccCcchh
Confidence 99998877532225556666666653
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.5e-67 Score=570.48 Aligned_cols=526 Identities=14% Similarity=0.188 Sum_probs=448.7
Q ss_pred hhHHHHHhhc---cCchhHHHHHHHHHHhCC-CCch-hhhHHHHHHhcCCChHHHHHHhccCCCCCcchHHHHHHHHHhC
Q 040394 50 IPCLNLLGLC---KSTGSLKAFHALLIVDGL-TNDK-CNTKLVSMYGSFGHVKYARSVFDSMPNPDFYSFQVMIRWYFLN 124 (691)
Q Consensus 50 ~~~~~ll~~~---~~~~~a~~~~~~~~~~~~-~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~ 124 (691)
..+..++..+ |+++.|..+++.|...+. +++. .++.++..|.+.|.+++|..+|+.|+.||..+|+.++.+|++.
T Consensus 371 ~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~ 450 (1060)
T PLN03218 371 PEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASS 450 (1060)
T ss_pred hHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhC
Confidence 3344444444 888899999999988885 4455 6778889999999999999999999889999999999999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCC-ChhHHHHHHHHhHhcCChHHHHHHH
Q 040394 125 DLYKDIVEFYKCMRKRLKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGP-DSFVLTGLVDMYAKCRDIGSSRQVF 203 (691)
Q Consensus 125 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 203 (691)
|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|.. |..+|+.++.+|++.|++++|.++|
T Consensus 451 g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf 530 (1060)
T PLN03218 451 QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998865 9999999999999999999999999
Q ss_pred hccC----CCChhhHHHHHHHHHhCCChhHHHHHHHHHHh--CCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCC
Q 040394 204 DETL----DKNVVSWTSMIAGYVQNDCAQEGLVLFNRMRE--GFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIGI 277 (691)
Q Consensus 204 ~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~ 277 (691)
++|. .||..+|+.||.+|++.|++++|.++|++|.. .|+.||..||+++|.+|++.|++++|.++|+.|.+.|+
T Consensus 531 ~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi 610 (1060)
T PLN03218 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 8883 47889999999999999999999999999976 67889999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHhc----CCCChhHHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCcHHHHHHH
Q 040394 278 EINSHLVTALLDMYVKCGNIRDARSVFDEL----CSIDLVSWTAMIVGYTQSGYPDKALKLFTDKKWADFFPNHVTIASV 353 (691)
Q Consensus 278 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 353 (691)
.|+..+|+.+|.+|++.|++++|.++|++| ..||..+|+.+|.+|++.|++++|.+++++|.+.|+.||..+|+.+
T Consensus 611 ~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsL 690 (1060)
T PLN03218 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL 690 (1060)
T ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 999999999999999999999999999998 4578889999999999999999999999999999999999999999
Q ss_pred HHHHhcCCChhhHHHHHHHHHHhCCC-chhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHH
Q 040394 354 LSASAQLGNLNMGRMVHSLGIRLGLE-DYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVT 432 (691)
Q Consensus 354 l~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~ 432 (691)
|.+|++.|++++|.++|+.|.+.|.. +..+|+.+|.+|++.|++++|.++|++|... |+.||..|
T Consensus 691 I~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~--------------Gi~Pd~~T 756 (1060)
T PLN03218 691 MGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL--------------GLCPNTIT 756 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------------CCCCCHHH
Confidence 99999999999999999999888877 8888999999999999999999999998877 78899999
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHhHHHHHHHHHhcCCC
Q 040394 433 LVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMREKNTVTWSAMIGGYGMQGD 512 (691)
Q Consensus 433 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 512 (691)
|+.++.+|++.|+++.|.+++.+|.+.|+ .|+..+|+.++..|. +++++|..+.+.+.. |+. .......+.
T Consensus 757 y~sLL~a~~k~G~le~A~~l~~~M~k~Gi-~pd~~tynsLIglc~--~~y~ka~~l~~~v~~-----f~~-g~~~~~n~w 827 (1060)
T PLN03218 757 YSILLVASERKDDADVGLDLLSQAKEDGI-KPNLVMCRCITGLCL--RRFEKACALGEPVVS-----FDS-GRPQIENKW 827 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHH--HHHHHHhhhhhhhhh-----hhc-cccccccch
Confidence 99999999999999999999999999998 899999999886543 245555554433321 110 111112234
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 040394 513 GGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFME 592 (691)
Q Consensus 513 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 592 (691)
.+.|..+|++|.+.|+.||..||+.++.+++..+..+.+..+++.| ...+..|+..+|++||+++++. .++|..+++
T Consensus 828 ~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m-~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~ 904 (1060)
T PLN03218 828 TSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENL-GISADSQKQSNLSTLVDGFGEY--DPRAFSLLE 904 (1060)
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHh-ccCCCCcchhhhHHHHHhhccC--hHHHHHHHH
Confidence 4679999999999999999999999998888899999999999888 5557788899999999988432 468999999
Q ss_pred hC---CCCCCHH
Q 040394 593 NM---PIEPDVS 601 (691)
Q Consensus 593 ~~---~~~p~~~ 601 (691)
+| |+.|+..
T Consensus 905 em~~~Gi~p~~~ 916 (1060)
T PLN03218 905 EAASLGVVPSVS 916 (1060)
T ss_pred HHHHcCCCCCcc
Confidence 99 7777764
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.8e-63 Score=541.98 Aligned_cols=482 Identities=25% Similarity=0.411 Sum_probs=439.0
Q ss_pred CCCChHHHHhhhcC--------CCchhHHHHHhhc---cCchhHHHHHHHHHHhCCCCch-hhhHHHHHHhcCCChHHHH
Q 040394 33 TQHELDQTFASFHS--------LPSIPCLNLLGLC---KSTGSLKAFHALLIVDGLTNDK-CNTKLVSMYGSFGHVKYAR 100 (691)
Q Consensus 33 ~~~~~~~a~~~~~~--------~~~~~~~~ll~~~---~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~ 100 (691)
..+++++|+.+|+. |+..++..++.+| +..+.+..++..+.+.|+.++. +++.++++|++.|++++|.
T Consensus 99 ~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 178 (697)
T PLN03081 99 ACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDAR 178 (697)
T ss_pred cCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHH
Confidence 34555666655543 5677888888888 7788899999999999999999 9999999999999999999
Q ss_pred HHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCC-C
Q 040394 101 SVFDSMPNPDFYSFQVMIRWYFLNDLYKDIVEFYKCMRKRLKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGP-D 179 (691)
Q Consensus 101 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~ 179 (691)
++|++|++||..+||+++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|++.|+.+.+.+++..+.+.|.. |
T Consensus 179 ~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d 258 (697)
T PLN03081 179 RLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGD 258 (697)
T ss_pred HHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999966 9
Q ss_pred hhHHHHHHHHhHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 040394 180 SFVLTGLVDMYAKCRDIGSSRQVFDETLDKNVVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKL 259 (691)
Q Consensus 180 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 259 (691)
..+|++|+++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.
T Consensus 259 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~ 338 (697)
T PLN03081 259 TFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL 338 (697)
T ss_pred ceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHHHHhh
Q 040394 260 RALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNIRDARSVFDELCSIDLVSWTAMIVGYTQSGYPDKALKLFTDKK 339 (691)
Q Consensus 260 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 339 (691)
|++++|.+++..|.+.|+.||..+|++||++|+++|++++|.++|++|.++|+.+||+||.+|++.|+.++|+++|++|.
T Consensus 339 g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~ 418 (697)
T PLN03081 339 ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMI 418 (697)
T ss_pred cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCCCcHHHHHHHHHHHhcCCChhhHHHHHHHHHH-hCCC-chhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHH
Q 040394 340 WADFFPNHVTIASVLSASAQLGNLNMGRMVHSLGIR-LGLE-DYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNS 417 (691)
Q Consensus 340 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 417 (691)
+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|.. +..+|+.++++|++.|++++|.+++++|.
T Consensus 419 ~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~--------- 489 (697)
T PLN03081 419 AEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP--------- 489 (697)
T ss_pred HhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC---------
Confidence 999999999999999999999999999999999986 5776 88999999999999999999999999884
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCH
Q 040394 418 IISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMREKNT 497 (691)
Q Consensus 418 li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 497 (691)
+.|+..+|++++.+|+..|+++.|..+++++.+.+ |.+..+|..++++|++.|++++|.++++.|.+.+.
T Consensus 490 --------~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~--p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 490 --------FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG--PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred --------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC--CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 67999999999999999999999999999997666 66788999999999999999999999999986432
Q ss_pred -----hHHHH-------HHHHHhcCCC----hHHHHHHHHHHHHCCCCCCHH
Q 040394 498 -----VTWSA-------MIGGYGMQGD----GGGSLALFSDMLNEEVQPNEV 533 (691)
Q Consensus 498 -----~~~~~-------li~~~~~~~~----~~~A~~~~~~m~~~g~~p~~~ 533 (691)
.+|.. ++.+-..+.+ ++...++..+|.+.|..||..
T Consensus 560 ~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 560 SMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred ccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 22311 1111111111 234556777888888888754
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.2e-37 Score=354.72 Aligned_cols=577 Identities=12% Similarity=0.046 Sum_probs=342.4
Q ss_pred cCchhHHHHHHHHHHhCCCCchhhhHHHHHHhcCCChHHHHHHhccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHH
Q 040394 60 KSTGSLKAFHALLIVDGLTNDKCNTKLVSMYGSFGHVKYARSVFDSMPN---PDFYSFQVMIRWYFLNDLYKDIVEFYKC 136 (691)
Q Consensus 60 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 136 (691)
++.+.|...++.++...+.....+..+...+.+.|++++|...+..+.. .+...+..+...+.+.|++++|.++|++
T Consensus 309 g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 388 (899)
T TIGR02917 309 GNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAK 388 (899)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4455555555555444332222444555555555555555555554432 2333455555555555555555555555
Q ss_pred HHHcCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhccCC---CChhh
Q 040394 137 MRKRLKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDETLD---KNVVS 213 (691)
Q Consensus 137 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~ 213 (691)
+.+.. +.+...+..+...+...|+.++|.+.++.+.+..+........++..+.+.|++++|..+++++.. ++..+
T Consensus 389 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 467 (899)
T TIGR02917 389 ATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASL 467 (899)
T ss_pred HHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHH
Confidence 55432 223334444445555555555555555555555444444455555555555666666555555432 24445
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHh
Q 040394 214 WTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIGIEINSHLVTALLDMYVK 293 (691)
Q Consensus 214 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 293 (691)
|..+...+...|++++|.+.|+++.+... .+...+..+...+...|++++|.++++.+.+.+ +.+..++..+...+.+
T Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 545 (899)
T TIGR02917 468 HNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLR 545 (899)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHH
Confidence 55566666666666666666666554321 233344455555556666666666666665543 2244555556666666
Q ss_pred cCCHHHHHHHHHhc---CCCChhHHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCcHHHHHHHHHHHhcCCChhhHHHHH
Q 040394 294 CGNIRDARSVFDEL---CSIDLVSWTAMIVGYTQSGYPDKALKLFTDKKWADFFPNHVTIASVLSASAQLGNLNMGRMVH 370 (691)
Q Consensus 294 ~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 370 (691)
.|+.++|..+|+++ ...+...+..++..+.+.|++++|.++++.+... .+.+..+|..+..++...|++++|...+
T Consensus 546 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 624 (899)
T TIGR02917 546 TGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSF 624 (899)
T ss_pred cCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666666555 2223345555566666666666666666665543 2334455556666666666666666666
Q ss_pred HHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 040394 371 SLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGS 450 (691)
Q Consensus 371 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 450 (691)
+.+.+..+.+...+..+...+.+.|++++|...|+++.+. .+.+..++..+...+...|+++.|.
T Consensus 625 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~~~~~~A~ 689 (899)
T TIGR02917 625 KKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALEL---------------KPDNTEAQIGLAQLLLAAKRTESAK 689 (899)
T ss_pred HHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------------CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 6666655555555666666666666666666666655433 2334566666677777777777777
Q ss_pred HHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCC
Q 040394 451 SLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE--KNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEV 528 (691)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 528 (691)
.+++.+.+.. +.+...+..+...+.+.|++++|...|+.+.. |+..++..++..+.+.|++++|.+.++++.+..
T Consensus 690 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~- 766 (899)
T TIGR02917 690 KIAKSLQKQH--PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH- 766 (899)
T ss_pred HHHHHHHhhC--cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 7777776665 55666666677777777777777777776653 444556666777777777777777777776642
Q ss_pred CCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHH
Q 040394 529 QPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENM-PIEP-DVSLFGAF 606 (691)
Q Consensus 529 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 606 (691)
+.+...+..+...|...|++++|.+.|+++.+. .+++...++.+...+...|+ .+|++.++++ ...| +..++..+
T Consensus 767 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~ 843 (899)
T TIGR02917 767 PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTL 843 (899)
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHH
Confidence 445556666666777777777777777766433 12335666677777777777 6677777766 3333 34456666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHH
Q 040394 607 LHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMK 661 (691)
Q Consensus 607 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 661 (691)
...+...|++++|...++++++..|.++.++..++.++.+.|++++|.+++++|+
T Consensus 844 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 844 GWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 6667777777777777777777777777777777777777777777777777765
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.1e-36 Score=350.14 Aligned_cols=581 Identities=11% Similarity=0.023 Sum_probs=408.0
Q ss_pred cCchhHHHHHHHHHHhCCCCchhhhHHHHHHhcCCChHHHHHHhccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHH
Q 040394 60 KSTGSLKAFHALLIVDGLTNDKCNTKLVSMYGSFGHVKYARSVFDSMPN---PDFYSFQVMIRWYFLNDLYKDIVEFYKC 136 (691)
Q Consensus 60 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 136 (691)
++.+.|...++.+++..+.....+..+...+...|++++|...|+++.+ .+...+..+...+.+.|++++|...++.
T Consensus 275 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 354 (899)
T TIGR02917 275 KNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSP 354 (899)
T ss_pred cCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4444444444444444332222333344445555555555555554431 2233445555555666666666666666
Q ss_pred HHHcCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhccCCC---Chhh
Q 040394 137 MRKRLKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDETLDK---NVVS 213 (691)
Q Consensus 137 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~ 213 (691)
+.+.. +.+...+..+...+.+.|++++|...|+.+.+..+.+...+..+...+...|++++|.+.|++..+. +...
T Consensus 355 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 433 (899)
T TIGR02917 355 ALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRA 433 (899)
T ss_pred HHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhh
Confidence 55442 3344455555566666666666666666666555555556666666666666666666666554321 2334
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHh
Q 040394 214 WTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIGIEINSHLVTALLDMYVK 293 (691)
Q Consensus 214 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 293 (691)
+..++..+.+.|++++|.++++++... .+++..++..+...+...|+.++|.+.|+++.+.. +.+...+..+...+..
T Consensus 434 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 511 (899)
T TIGR02917 434 DLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQ 511 (899)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHH
Confidence 445556666666666666666666543 23355566666667777777777777777766543 2244555666666777
Q ss_pred cCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCcHHHHHHHHHHHhcCCChhhHHHHH
Q 040394 294 CGNIRDARSVFDELC---SIDLVSWTAMIVGYTQSGYPDKALKLFTDKKWADFFPNHVTIASVLSASAQLGNLNMGRMVH 370 (691)
Q Consensus 294 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 370 (691)
.|++++|.+.|+++. +.+..++..+...+.+.|+.++|..+++++...+ +.+...+..+...+...|++++|..++
T Consensus 512 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 590 (899)
T TIGR02917 512 EGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAIL 590 (899)
T ss_pred CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 777777777776662 2345566666777777777777777777765542 234455566666777777777777777
Q ss_pred HHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 040394 371 SLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGS 450 (691)
Q Consensus 371 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 450 (691)
+.+.+..+.+...+..+...|...|++++|...|+++.+. .+.+...+..+...+...|++++|.
T Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~~~~~~A~ 655 (899)
T TIGR02917 591 NEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL---------------QPDSALALLLLADAYAVMKNYAKAI 655 (899)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------CCCChHHHHHHHHHHHHcCCHHHHH
Confidence 7777666666667777777777777777777777766543 2345667788888888999999999
Q ss_pred HHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCC
Q 040394 451 SLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE---KNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEE 527 (691)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 527 (691)
.+++.+.+.. |.+...+..++..+...|++++|..+++.+.+ .+...+..+...+...|++++|...++++...
T Consensus 656 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~- 732 (899)
T TIGR02917 656 TSLKRALELK--PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR- 732 (899)
T ss_pred HHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 9999988876 67788888999999999999999999998875 35667888889999999999999999999885
Q ss_pred CCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHH
Q 040394 528 VQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENM--PIEPDVSLFGA 605 (691)
Q Consensus 528 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ 605 (691)
.|+..++..+..++.+.|++++|.+.++.+.+. .+.+...+..+...|...|++++|.+.|+++ ..+++..+++.
T Consensus 733 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 809 (899)
T TIGR02917 733 -APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNN 809 (899)
T ss_pred -CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 466677778888999999999999999988544 3345778888999999999999999999998 34556778999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCCCc
Q 040394 606 FLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRGLS 666 (691)
Q Consensus 606 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 666 (691)
+...+...|+ .+|+..++++.+..|+++.++..++.++...|++++|.++++++++.+..
T Consensus 810 l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 810 LAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 9999999999 88999999999999999999999999999999999999999999997753
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.98 E-value=7.1e-27 Score=268.23 Aligned_cols=587 Identities=9% Similarity=0.044 Sum_probs=376.9
Q ss_pred cCchhHHHHHHHHHHhCCCCchhhhHHHHHHhcCCChHHHHHHhccCCC--CCcchH-----------------HHHHHH
Q 040394 60 KSTGSLKAFHALLIVDGLTNDKCNTKLVSMYGSFGHVKYARSVFDSMPN--PDFYSF-----------------QVMIRW 120 (691)
Q Consensus 60 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-----------------~~ll~~ 120 (691)
++.+.|+..++.+....+.+..++..++.++.+.|+.++|.+.+++..+ |+...+ ..+.+.
T Consensus 42 ~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~l 121 (1157)
T PRK11447 42 HREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARL 121 (1157)
T ss_pred CChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHH
Confidence 8888999999988887665544888899999999999999999999864 443322 233446
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCcch-HHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHH
Q 040394 121 YFLNDLYKDIVEFYKCMRKRLKEHDNFV-FSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSS 199 (691)
Q Consensus 121 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 199 (691)
+.+.|++++|+..|+++.+.+ +|+... ...........|+.++|...++++.+..|.+...+..+...+...|+.++|
T Consensus 122 l~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eA 200 (1157)
T PRK11447 122 LATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEG 200 (1157)
T ss_pred HHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHH
Confidence 788999999999999998763 344321 111122233569999999999999999888999999999999999999999
Q ss_pred HHHHhccCCCCh------hhH-----------------HHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 040394 200 RQVFDETLDKNV------VSW-----------------TSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTAC 256 (691)
Q Consensus 200 ~~~~~~~~~~~~------~~~-----------------~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~ 256 (691)
+..++++...+. ..| ...+..+-.......|...+.++......|+... ...-..+
T Consensus 201 l~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~ 279 (1157)
T PRK11447 201 FAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAA 279 (1157)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHH
Confidence 999998744211 111 1111111112223445555555544322333221 2234556
Q ss_pred HccCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCh---hHHHH------------HH
Q 040394 257 AKLRALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNIRDARSVFDELCS--IDL---VSWTA------------MI 319 (691)
Q Consensus 257 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~------------li 319 (691)
...|++++|...|++.++.. +.+..++..+...+.+.|++++|...|++... |+. ..|.. ..
T Consensus 280 ~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 280 VDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence 78899999999999999864 33678899999999999999999999998732 321 12222 23
Q ss_pred HHHHhcCCchhHHHHHHHhhHCCCCCcHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHH
Q 040394 320 VGYTQSGYPDKALKLFTDKKWADFFPNHVTIASVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIAD 399 (691)
Q Consensus 320 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 399 (691)
..+.+.|++++|.+.|++..... +.+...+..+...+...|++++|+..++.+.+..+.+...+..+...|. .++.++
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~ 436 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEK 436 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHH
Confidence 45778999999999999998863 2345667778889999999999999999999998887777888888875 467899
Q ss_pred HHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhc
Q 040394 400 ARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKC 479 (691)
Q Consensus 400 a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 479 (691)
|..+++.+.............. .....+..+...+...|+.++|...+++..+.. |.++..+..+...|.+.
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~------l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERS------LQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH------hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHc
Confidence 9999988764321111000000 011234445556667777777777777777766 56666666777777777
Q ss_pred CCHHHHHHHHHhccc--C-CHhHHHHHHHHHhcCCChHHHHHHHHHHHHCC-----------------------------
Q 040394 480 GDAQSARMVFDAMRE--K-NTVTWSAMIGGYGMQGDGGGSLALFSDMLNEE----------------------------- 527 (691)
Q Consensus 480 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g----------------------------- 527 (691)
|++++|...++++.+ | +...+..+...+...++.++|+..++.+....
T Consensus 509 G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 509 GQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 777777777776643 2 33333333334445555555555554432211
Q ss_pred ----------CCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 040394 528 ----------VQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEFMENM-P 595 (691)
Q Consensus 528 ----------~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 595 (691)
.+++...+..+...+.+.|++++|++.|++..+ ..|+ ...+..++..|...|++++|++.++.. .
T Consensus 589 ~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 589 EAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 122333344444455555555555555554432 2333 445555555555555555555555554 2
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc------hhHHHHHHHHHhCCCcHHHHHHHHHHHh
Q 040394 596 IEPD-VSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKA------CYYVLVSNLYASDGRWIRVNQVRELMKQ 662 (691)
Q Consensus 596 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 662 (691)
..|+ ..++..+..++...|++++|.++++++++..|+++ ..+..++.++...|++++|.+.|++...
T Consensus 666 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 666 TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2222 23444445555555555555555555555444332 2334445555555555555555555544
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=4.4e-25 Score=253.51 Aligned_cols=542 Identities=9% Similarity=0.007 Sum_probs=376.2
Q ss_pred cCchhHHHHHHHHHHhCCCCchhh----------------hHHHHHHhcCCChHHHHHHhccCCC--CCcchHH--HHHH
Q 040394 60 KSTGSLKAFHALLIVDGLTNDKCN----------------TKLVSMYGSFGHVKYARSVFDSMPN--PDFYSFQ--VMIR 119 (691)
Q Consensus 60 ~~~~~a~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~--~ll~ 119 (691)
|+.+.|....+.+.+..+.+.... ..+.+.+.+.|++++|.+.|+++.+ |+..... ....
T Consensus 76 g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~ 155 (1157)
T PRK11447 76 GDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRL 155 (1157)
T ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHH
Confidence 899999999999988876554422 3345678999999999999998764 2222211 1111
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCCCh-------------------
Q 040394 120 WYFLNDLYKDIVEFYKCMRKRLKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGPDS------------------- 180 (691)
Q Consensus 120 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------------------- 180 (691)
.....|++++|++.|+++.+.. +-+...+..+...+...|+.++|...++++.+....+.
T Consensus 156 ~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~ 234 (1157)
T PRK11447 156 VAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDAS 234 (1157)
T ss_pred HhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhh
Confidence 2234699999999999999873 44566777888889999999999999999876432111
Q ss_pred -hHHHHHHHHhHhcCChHHHHHHHhccC----CCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 040394 181 -FVLTGLVDMYAKCRDIGSSRQVFDETL----DKNVVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTA 255 (691)
Q Consensus 181 -~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~ 255 (691)
..+...+..+-.....+.|...+++.. +|.. ........+...|++++|+..|++..+... .+...+..+..+
T Consensus 235 ~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~-~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~ 312 (1157)
T PRK11447 235 VAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF-RARAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQA 312 (1157)
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch-HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 111222222222223444555554331 1221 112335567788999999999999887532 266778888888
Q ss_pred HHccCChhhHHHHHHHHHHHCCCCc-hHHH------------HHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHH
Q 040394 256 CAKLRALHQGKWLHGYILKIGIEIN-SHLV------------TALLDMYVKCGNIRDARSVFDELC---SIDLVSWTAMI 319 (691)
Q Consensus 256 ~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~------------~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li 319 (691)
+.+.|+.++|...|++..+...... ...+ ......+.+.|++++|...|+++. ..+...+..+.
T Consensus 313 ~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg 392 (1157)
T PRK11447 313 YSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLG 392 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 8999999999999999887643221 1111 122456778899999999998882 23556777788
Q ss_pred HHHHhcCCchhHHHHHHHhhHCCCCCc-HHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCC---------chhHHHHHHH
Q 040394 320 VGYTQSGYPDKALKLFTDKKWADFFPN-HVTIASVLSASAQLGNLNMGRMVHSLGIRLGLE---------DYTVINALVD 389 (691)
Q Consensus 320 ~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---------~~~~~~~l~~ 389 (691)
..+...|++++|++.|++..+. .|+ ...+..+...+. .++.++|..+++.+...... ....+..+..
T Consensus 393 ~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~ 469 (1157)
T PRK11447 393 DVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAE 469 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 8899999999999999998875 343 445555555553 45678888777654332111 1234556777
Q ss_pred HhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHH
Q 040394 390 MYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVG 469 (691)
Q Consensus 390 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 469 (691)
.+...|++++|...|++..+.+ +-+...+..+...+.+.|+.++|...++.+.+.. |.++..+
T Consensus 470 ~~~~~g~~~eA~~~~~~Al~~~---------------P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~--P~~~~~~ 532 (1157)
T PRK11447 470 ALENQGKWAQAAELQRQRLALD---------------PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK--PNDPEQV 532 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHH
Confidence 8888999999999998877542 2234566677778888888888888888887755 4444443
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcc-------------------------------------------cCCHhHHHHHHHH
Q 040394 470 TALLNFYAKCGDAQSARMVFDAMR-------------------------------------------EKNTVTWSAMIGG 506 (691)
Q Consensus 470 ~~l~~~~~~~g~~~~A~~~~~~~~-------------------------------------------~~~~~~~~~li~~ 506 (691)
..+...+...++.++|...++.+. ..+...+..+...
T Consensus 533 ~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~ 612 (1157)
T PRK11447 533 YAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADW 612 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHH
Confidence 333333444444444444444332 1244456678888
Q ss_pred HhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChH
Q 040394 507 YGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLE 585 (691)
Q Consensus 507 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~ 585 (691)
+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.++... ...|+ ...+..+..++...|+++
T Consensus 613 ~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll---~~~p~~~~~~~~la~~~~~~g~~~ 688 (1157)
T PRK11447 613 AQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLP---ATANDSLNTQRRVALAWAALGDTA 688 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh---ccCCCChHHHHHHHHHHHhCCCHH
Confidence 999999999999999999863 3456788888999999999999999999764 34555 556777888999999999
Q ss_pred HHHHHHHhC-CCC----C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040394 586 EALEFMENM-PIE----P---DVSLFGAFLHGCGLYSRFDLGEVMIKKMLE 628 (691)
Q Consensus 586 ~A~~~~~~~-~~~----p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (691)
+|.++++++ ... | +...+..+...+...|+.++|+..|++++.
T Consensus 689 eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 689 AAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999998 222 2 224566677888999999999999999986
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=4.9e-23 Score=225.33 Aligned_cols=579 Identities=11% Similarity=0.018 Sum_probs=359.5
Q ss_pred cCchhHHHHHHHHHHhCCCCchhhhHHHHHHhcCCChHHHHHHhccCCC--CCcchHHHHHHHHHhCCChhHHHHHHHHH
Q 040394 60 KSTGSLKAFHALLIVDGLTNDKCNTKLVSMYGSFGHVKYARSVFDSMPN--PDFYSFQVMIRWYFLNDLYKDIVEFYKCM 137 (691)
Q Consensus 60 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 137 (691)
|+...|...++..++..+.+..++..+...|.+.|+.++|+..+++..+ |+...|..++..+ +++++|..+|+++
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l 134 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEEL 134 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHH
Confidence 5666666666666666655533666666666666666666666666543 3323333333222 6666666666666
Q ss_pred HHcCCCCCcchHHHHHHHH-----cccCChhHHHHHHHHHHHhCCC-Chh-HHHHHHHHhHhcCChHHHHHHHhccCCC-
Q 040394 138 RKRLKEHDNFVFSKVLKAC-----CELRDIDEGMKVHCEIVKVGGP-DSF-VLTGLVDMYAKCRDIGSSRQVFDETLDK- 209 (691)
Q Consensus 138 ~~~~~~~~~~~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~~~~-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 209 (691)
.... +-+..++..+.... ....+.++|.+.++ .....+. +.. ....+...|.+.|++++|++++.++.+.
T Consensus 135 ~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~ 212 (987)
T PRK09782 135 LAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN 212 (987)
T ss_pred HHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC
Confidence 6542 21223333333320 11122244444444 2222221 222 2333355666666666666666555332
Q ss_pred --ChhhHHHHHHHHHh-CCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCC-CchH---
Q 040394 210 --NVVSWTSMIAGYVQ-NDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIGIE-INSH--- 282 (691)
Q Consensus 210 --~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~--- 282 (691)
+......|...|.+ .++ +++..+++. .++-+......+...+.+.|+.++|..++.++...-.. |...
T Consensus 213 pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~ 287 (987)
T PRK09782 213 TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWL 287 (987)
T ss_pred CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHH
Confidence 22223444444544 244 445444332 22235555555666666666666666555554332111 1111
Q ss_pred ---------------------------HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHH--HHhcCCchhHHH
Q 040394 283 ---------------------------LVTALLDMYVKCGNIRDARSVFDELCSIDLVSWTAMIVG--YTQSGYPDKALK 333 (691)
Q Consensus 283 ---------------------------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~ 333 (691)
..-.++..+.+.++++.+.++.. . .|.... ..+.. ....+...++.+
T Consensus 288 ~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~--~~~r~~~~~~~~~~~~~~~ 363 (987)
T PRK09782 288 YLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA-T-LPANEM--LEERYAVSVATRNKAEALR 363 (987)
T ss_pred HHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-C-CCcchH--HHHHHhhccccCchhHHHH
Confidence 11223566677777776766633 2 222222 12222 223356666766
Q ss_pred HHHHhhHCCCCC-cHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCC---chhHHHHHHHHhHhcCC---hHHHHHHHHh
Q 040394 334 LFTDKKWADFFP-NHVTIASVLSASAQLGNLNMGRMVHSLGIRLGLE---DYTVINALVDMYAKCHV---IADARYIFET 406 (691)
Q Consensus 334 ~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~---~~~a~~~~~~ 406 (691)
.+..|... .| +....-.+--...+.|+.++|..+++........ +....+.++..|.+.+. ..++..+-..
T Consensus 364 ~~~~~y~~--~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 441 (987)
T PRK09782 364 LARLLYQQ--EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKP 441 (987)
T ss_pred HHHHHHhc--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccc
Confidence 67667665 22 3333334444566788899999998888774222 55666788889988887 4444444332
Q ss_pred CCCCCc-----------hhHHHHHHhhhCCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHH
Q 040394 407 TSEKDV-----------IAWNSIISGLDDNVSP--DAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALL 473 (691)
Q Consensus 407 ~~~~~~-----------~~~~~li~~~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 473 (691)
+...+. ..+..++.++. ..++ +...+..+..++.. ++.++|...+....... | +......+.
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~al~-~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--P-d~~~~L~lA 516 (987)
T PRK09782 442 LPLAEQRQWQSQLPGIADNCPAIVRLLG-DMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--P-DAWQHRAVA 516 (987)
T ss_pred cccchhHHHHhhhhhhhhhHHHHHHhcc-cCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--C-chHHHHHHH
Confidence 322211 12233333332 1233 56677777777766 78888999888877665 3 333444455
Q ss_pred HHHHhcCCHHHHHHHHHhccc--CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCCHHH
Q 040394 474 NFYAKCGDAQSARMVFDAMRE--KNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNE-VIFTTILSACSHTGMVGE 550 (691)
Q Consensus 474 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~ 550 (691)
..+...|++++|...|+++.. ++...+..+...+.+.|+.++|...+++..+.+ |+. ..+..+.......|++++
T Consensus 517 ~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 517 YQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHH
Confidence 566789999999999998764 445567777888899999999999999999864 443 333334445556799999
Q ss_pred HHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040394 551 GWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENM-PIEPD-VSLFGAFLHGCGLYSRFDLGEVMIKKMLE 628 (691)
Q Consensus 551 A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (691)
|...+++.. .+.|+...+..+..++.+.|++++|++.+++. ...|+ ...+..+...+...|++++|+..++++++
T Consensus 595 Al~~~~~AL---~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 595 ALNDLTRSL---NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHHHHH---HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999774 46788888999999999999999999999998 55564 45778888889999999999999999999
Q ss_pred cCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCC
Q 040394 629 LHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRG 664 (691)
Q Consensus 629 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 664 (691)
..|+++..+..++.++...|++++|...+++..+..
T Consensus 672 l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 672 GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999998754
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=3.4e-21 Score=210.98 Aligned_cols=553 Identities=12% Similarity=-0.006 Sum_probs=394.5
Q ss_pred HHHhcCCChHHHHHHhccCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHcccCChhH
Q 040394 88 SMYGSFGHVKYARSVFDSMPN--P-DFYSFQVMIRWYFLNDLYKDIVEFYKCMRKRLKEHDNFVFSKVLKACCELRDIDE 164 (691)
Q Consensus 88 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 164 (691)
..+...|++++|...|+...+ | +..++..|...|...|++++|+..+++..+. .|+...|..++..+ ++.++
T Consensus 52 ~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~k 126 (987)
T PRK09782 52 LKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVK 126 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChh
Confidence 444455999999999998753 3 4567899999999999999999999999986 45555555545333 88999
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHH--------hHhcCChHHHHHHHhccCCCC--hhhHHH-HHHHHHhCCChhHHHHH
Q 040394 165 GMKVHCEIVKVGGPDSFVLTGLVDM--------YAKCRDIGSSRQVFDETLDKN--VVSWTS-MIAGYVQNDCAQEGLVL 233 (691)
Q Consensus 165 a~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~--~~~~~~-li~~~~~~g~~~~A~~~ 233 (691)
|..+++++.+..|.+..++..+... |.+.+...++++ .+...|+ ..+... +...|.+.|++++|+++
T Consensus 127 A~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 127 SVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 9999999999998888888888887 888877777777 3334443 443444 48999999999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHc-cCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---
Q 040394 234 FNRMREGFVEGNQITLGSLVTACAK-LRALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNIRDARSVFDELCS--- 309 (691)
Q Consensus 234 ~~~m~~~~~~p~~~t~~~li~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--- 309 (691)
++++.+.+.. +..-...+-.++.. .++ +.+..+++. .+.-+...+..+.+.|.+.|+.++|.++++++..
T Consensus 205 L~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~ 278 (987)
T PRK09782 205 YNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFT 278 (987)
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccccc
Confidence 9999997643 34445556667776 466 777777543 3346888999999999999999999999998822
Q ss_pred --CChhHHH------------------------------HHHHHHHhcCCchhHHHHHHHhhHCCCCCcHHHHHHHHHHH
Q 040394 310 --IDLVSWT------------------------------AMIVGYTQSGYPDKALKLFTDKKWADFFPNHVTIASVLSAS 357 (691)
Q Consensus 310 --~~~~~~~------------------------------~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 357 (691)
|+..+|- .++..+.+.++++-+.++. .+.|.......-..+.
T Consensus 279 ~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~r~~~~ 352 (987)
T PRK09782 279 TDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEMLEERYAVS 352 (987)
T ss_pred CCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchHHHHHHhhc
Confidence 2222211 1244556666666555442 2445444322222233
Q ss_pred hcCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCC-C-c----hhHHHHHHhhhCCCCCCHH
Q 040394 358 AQLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEK-D-V----IAWNSIISGLDDNVSPDAV 431 (691)
Q Consensus 358 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~-~----~~~~~li~~~~~~~~p~~~ 431 (691)
...+...++...+..+.+..+.+.....-+.-...+.|+.++|..+|+..... . . ..-+-++..+.....++..
T Consensus 353 ~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 432 (987)
T PRK09782 353 VATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATP 432 (987)
T ss_pred cccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccch
Confidence 34577888888888888887877777777888888999999999999987662 1 1 0112233333333222222
Q ss_pred HHHHHH-H------HHhccCcHHHHHHHHHHHHHcC-CCCC--chhHHHHHHHHHHhcCCHHHHHHHHHhccc--CCHhH
Q 040394 432 TLVSVI-S------ACASLGAVQVGSSLHAYSTKQG-LLSS--NVYVGTALLNFYAKCGDAQSARMVFDAMRE--KNTVT 499 (691)
Q Consensus 432 ~~~~ll-~------~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~ 499 (691)
.-...+ . -|.-.|+...+...+......- ..|+ +...+..+..++.. ++.++|...+.+... |+...
T Consensus 433 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~ 511 (987)
T PRK09782 433 AKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQ 511 (987)
T ss_pred HHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHH
Confidence 211111 0 0111233333333333332221 1144 67788888888877 889999998877664 44333
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHH
Q 040394 500 WSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLL 578 (691)
Q Consensus 500 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~ 578 (691)
...+...+...|++++|...++++... .|+...+..+..++.+.|+.++|.+.++...+ ..|+ ...+..+...+
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~---l~P~~~~l~~~La~~l 586 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQ---RGLGDNALYWWLHAQR 586 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCccHHHHHHHHHHH
Confidence 333445556899999999999998664 55556666677788899999999999998853 3454 33333344445
Q ss_pred HhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHH
Q 040394 579 ARAGRLEEALEFMENM-PIEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVR 657 (691)
Q Consensus 579 ~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 657 (691)
.+.|++++|+..+++. ...|+...+..+...+.+.|++++|+..++++++.+|+++..+..++.++...|++++|++.+
T Consensus 587 ~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l 666 (987)
T PRK09782 587 YIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREML 666 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5669999999999998 677888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCC
Q 040394 658 ELMKQRGL 665 (691)
Q Consensus 658 ~~~~~~g~ 665 (691)
++.++...
T Consensus 667 ~~AL~l~P 674 (987)
T PRK09782 667 ERAHKGLP 674 (987)
T ss_pred HHHHHhCC
Confidence 99988543
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=1.6e-21 Score=188.91 Aligned_cols=434 Identities=12% Similarity=0.105 Sum_probs=279.7
Q ss_pred ccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhccCC---CChhhHHHHHHHHHhCCChhHHHHHH
Q 040394 158 ELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDETLD---KNVVSWTSMIAGYVQNDCAQEGLVLF 234 (691)
Q Consensus 158 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 234 (691)
+.|++.+|++.-...-..++.+....-.+-.++.+..+.+....--....+ ....+|..+...+-..|++++|+.+|
T Consensus 60 q~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y 139 (966)
T KOG4626|consen 60 QGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALY 139 (966)
T ss_pred hccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 445555555544433333333333333333444444444443322222211 13456777777777777777777777
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCCCchHHH-HHHHHHHHhcCCHHHHHHHHHhcCC--CC
Q 040394 235 NRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIGIEINSHLV-TALLDMYVKCGNIRDARSVFDELCS--ID 311 (691)
Q Consensus 235 ~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~--~~ 311 (691)
+.|.+...+ ....|..+..++...|+.+.|.+.|.+.++. .|+.... +.+...+-..|++++|...+.+... |.
T Consensus 140 ~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~ 216 (966)
T KOG4626|consen 140 RAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPC 216 (966)
T ss_pred HHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCc
Confidence 777663221 3455666666666666666666666665543 3443322 2233333344556665555554422 22
Q ss_pred -hhHHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCcHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCchhHHHHHHHH
Q 040394 312 -LVSWTAMIVGYTQSGYPDKALKLFTDKKWADFFPNHVTIASVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVINALVDM 390 (691)
Q Consensus 312 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 390 (691)
.++|+.|...+-..|+...|++.|++.. +..+.-..+|-.|...
T Consensus 217 fAiawsnLg~~f~~~Gei~~aiq~y~eAv-----------------------------------kldP~f~dAYiNLGnV 261 (966)
T KOG4626|consen 217 FAIAWSNLGCVFNAQGEIWLAIQHYEEAV-----------------------------------KLDPNFLDAYINLGNV 261 (966)
T ss_pred eeeeehhcchHHhhcchHHHHHHHHHHhh-----------------------------------cCCCcchHHHhhHHHH
Confidence 2345555555555555555555555544 4444434444555555
Q ss_pred hHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHH
Q 040394 391 YAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPD-AVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVG 469 (691)
Q Consensus 391 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 469 (691)
|...+.+++|...|.+... ..|+ ...+..+...|-.+|+++.|...+++..+.. |.-+..|
T Consensus 262 ~ke~~~~d~Avs~Y~rAl~----------------lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay 323 (966)
T KOG4626|consen 262 YKEARIFDRAVSCYLRALN----------------LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAY 323 (966)
T ss_pred HHHHhcchHHHHHHHHHHh----------------cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC--CCchHHH
Confidence 5555666666555555442 2333 3345555555566666666666666666665 6667777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccc--C-CHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhccc
Q 040394 470 TALLNFYAKCGDAQSARMVFDAMRE--K-NTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNE-VIFTTILSACSHT 545 (691)
Q Consensus 470 ~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~ 545 (691)
+.|..++-..|++.+|...+.+... | ...+.+.|...|...|.+++|..+|....+ +.|.. ..++.+...|-+.
T Consensus 324 ~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqq 401 (966)
T KOG4626|consen 324 NNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQ 401 (966)
T ss_pred hHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhc
Confidence 7777777777777777777776653 2 345677777888888888888888887776 56665 4677888888999
Q ss_pred CCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHH
Q 040394 546 GMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEFMENM-PIEPDV-SLFGAFLHGCGLYSRFDLGEVM 622 (691)
Q Consensus 546 g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~ 622 (691)
|++++|+..|++.. .+.|+ ...|+.+...|-..|+.+.|+..+.+. .+.|.. ..++.|...|...|++.+|++-
T Consensus 402 gnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~s 478 (966)
T KOG4626|consen 402 GNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQS 478 (966)
T ss_pred ccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHH
Confidence 99999999998653 68888 778999999999999999999998887 777765 5889999999999999999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhCCCcHH
Q 040394 623 IKKMLELHPDKACYYVLVSNLYASDGRWIR 652 (691)
Q Consensus 623 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 652 (691)
+++++++.|+.+..+-.++.++.--.+|.+
T Consensus 479 Y~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 479 YRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 999999999999999888887766556555
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=2.3e-20 Score=180.96 Aligned_cols=424 Identities=11% Similarity=0.074 Sum_probs=338.6
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhc
Q 040394 215 TSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIGIEINSHLVTALLDMYVKC 294 (691)
Q Consensus 215 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 294 (691)
..|..-..+.|++++|++.-...-..+.. +..+.-.+-..+.+..+.+.....-....+. .+.-..+|..+.+.+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHh
Confidence 33444455666666666654444322211 1111112222233333444333222222222 123457888888889899
Q ss_pred CCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCcHHHHHHHHH-HHhcCCChhhHHHHH
Q 040394 295 GNIRDARSVFDELCS---IDLVSWTAMIVGYTQSGYPDKALKLFTDKKWADFFPNHVTIASVLS-ASAQLGNLNMGRMVH 370 (691)
Q Consensus 295 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~-~~~~~~~~~~a~~~~ 370 (691)
|++++|+.+++.+.+ ..+..|..+..++...|+.+.|.+.|.+..+ +.|+.....+-+. .+...|++.+|...+
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHH
Confidence 999999999988833 3566899999999999999999999988776 4777766555444 455679999999999
Q ss_pred HHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCC-HHHHHHHHHHHhccCcHHHH
Q 040394 371 SLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPD-AVTLVSVISACASLGAVQVG 449 (691)
Q Consensus 371 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a 449 (691)
.++++..+.-..+|+.|...+-..|++..|+..|++..+- .|+ ...|..|...|...+.++.|
T Consensus 208 lkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl----------------dP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 208 LKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL----------------DPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC----------------CCcchHHHhhHHHHHHHHhcchHH
Confidence 9999888887778899999999999999999999998754 354 35788999999999999999
Q ss_pred HHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--CC-HhHHHHHHHHHhcCCChHHHHHHHHHHHHC
Q 040394 450 SSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE--KN-TVTWSAMIGGYGMQGDGGGSLALFSDMLNE 526 (691)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 526 (691)
...+.+..... |.....+..+...|...|..+-|+..+++..+ |+ ...|+.|..++-..|++.+|...+.+....
T Consensus 272 vs~Y~rAl~lr--pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 272 VSCYLRALNLR--PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHHHhcC--CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 99999988876 77888888899999999999999999999875 43 568999999999999999999999999884
Q ss_pred CCCCCH-HHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HH
Q 040394 527 EVQPNE-VIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEFMENM-PIEPDV-SL 602 (691)
Q Consensus 527 g~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~ 602 (691)
.|+. ...+.+...+...|.+++|..+|... +.+.|. ....+.|...|-.+|++++|+..+++. .++|+. ..
T Consensus 350 --~p~hadam~NLgni~~E~~~~e~A~~ly~~a---l~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda 424 (966)
T KOG4626|consen 350 --CPNHADAMNNLGNIYREQGKIEEATRLYLKA---LEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADA 424 (966)
T ss_pred --CCccHHHHHHHHHHHHHhccchHHHHHHHHH---HhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHH
Confidence 5554 67888999999999999999999954 467888 678999999999999999999999998 889986 48
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCCC
Q 040394 603 FGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRGL 665 (691)
Q Consensus 603 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 665 (691)
++.+...|...|+...|.+.+.+++..+|.-...+..|+.+|..+|+..+|+.-+++.++...
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 999999999999999999999999999999999999999999999999999999999988543
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=6.6e-20 Score=188.32 Aligned_cols=303 Identities=13% Similarity=0.089 Sum_probs=210.4
Q ss_pred CCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCC---CHHHHHHH
Q 040394 360 LGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSP---DAVTLVSV 436 (691)
Q Consensus 360 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p---~~~~~~~l 436 (691)
.|++++|...+..+.+.++.+..++..+...+...|++++|..+++.+.... ..+ ...++..+
T Consensus 48 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------------~~~~~~~~~~~~~L 113 (389)
T PRK11788 48 NEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP--------------DLTREQRLLALQEL 113 (389)
T ss_pred cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC--------------CCCHHHHHHHHHHH
Confidence 3444444444444444444444444555555666666666666665554331 111 12345566
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCC--------HhHHHHHHHHHh
Q 040394 437 ISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMREKN--------TVTWSAMIGGYG 508 (691)
Q Consensus 437 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~ 508 (691)
...+...|+++.|..+|+.+.+.. +.+...+..++..+.+.|++++|.+.++.+.+.+ ...|..+...+.
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 191 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEG--DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL 191 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCC--cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 666666677777777776666554 5566667777777777777777777777765421 123456777788
Q ss_pred cCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC--hhHHHHHHHHHHhcCChHH
Q 040394 509 MQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS--MKHYVCMVDLLARAGRLEE 586 (691)
Q Consensus 509 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~ 586 (691)
+.|++++|...++++.+.. +.+...+..+...+.+.|++++|.++++++... .|+ ..++..++.+|.+.|++++
T Consensus 192 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~ 267 (389)
T PRK11788 192 ARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAE 267 (389)
T ss_pred hCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHH
Confidence 8899999999999888753 233456677778888899999999999988533 344 4567888999999999999
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh--CCCcHHHHHHHHHHHhC
Q 040394 587 ALEFMENM-PIEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYAS--DGRWIRVNQVRELMKQR 663 (691)
Q Consensus 587 A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~ 663 (691)
|.+.++++ ...|+...+..++..+.+.|++++|..+++++.+..|++......+...+.. .|+.+++..++++|.+.
T Consensus 268 A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 268 GLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 99999998 5667777778899999999999999999999999999976554444333322 56999999999999999
Q ss_pred CCccCCCeeEEEeCCeeeE
Q 040394 664 GLSKSPGCSLVDLDIANDF 682 (691)
Q Consensus 664 g~~~~~~~~~~~~~~~~~~ 682 (691)
++.++|.......+-....
T Consensus 348 ~~~~~p~~~c~~cg~~~~~ 366 (389)
T PRK11788 348 QLKRKPRYRCRNCGFTART 366 (389)
T ss_pred HHhCCCCEECCCCCCCCcc
Confidence 9999998776555544433
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.88 E-value=1.3e-17 Score=170.97 Aligned_cols=566 Identities=11% Similarity=0.060 Sum_probs=245.1
Q ss_pred cCchhHHHHHHHHHHhCCCCch-hhhHHHHHHhcCCChHHHHHHhccCCCCCcchHHHHHHHH---Hh---CCChhHHHH
Q 040394 60 KSTGSLKAFHALLIVDGLTNDK-CNTKLVSMYGSFGHVKYARSVFDSMPNPDFYSFQVMIRWY---FL---NDLYKDIVE 132 (691)
Q Consensus 60 ~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~---~~---~~~~~~a~~ 132 (691)
++...+..+++.++...+...+ +.-.+..++.+.|+.+.|+..|.+..+-|+..-++++... .. ...+..++.
T Consensus 178 kdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ 257 (1018)
T KOG2002|consen 178 KDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQ 257 (1018)
T ss_pred ccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHH
Confidence 4555555555555444333222 3334445555666666666666555443333222222211 11 122334444
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCC---ChhHHHHHHHHhHhcCChHHHHHHHhccCC-
Q 040394 133 FYKCMRKRLKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGP---DSFVLTGLVDMYAKCRDIGSSRQVFDETLD- 208 (691)
Q Consensus 133 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 208 (691)
++...-... +-++...+.|..-|.-.|+++.+..+...+...-.. -...|-.+..+|...|++++|...|.+...
T Consensus 258 ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~ 336 (1018)
T KOG2002|consen 258 LLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA 336 (1018)
T ss_pred HHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc
Confidence 444433331 334455555555555556666666666555554322 333455556666666666666665554422
Q ss_pred -CC--hhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC----ChhhHHHHHHHHHHHCCCCch
Q 040394 209 -KN--VVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLR----ALHQGKWLHGYILKIGIEINS 281 (691)
Q Consensus 209 -~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~----~~~~a~~~~~~~~~~g~~~~~ 281 (691)
++ +..+--|...+.+.|+.+.+...|+...+.. +-+..|..++-..|...+ ..+.|..++....+.- +.|.
T Consensus 337 ~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~ 414 (1018)
T KOG2002|consen 337 DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDS 414 (1018)
T ss_pred CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccH
Confidence 21 2233445555566666666666666555431 112333444434443332 2233333333333322 2234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhc--------CCCChhHHHHHHHHHHhcCCchhHHHHHHHhhHC---CCCCcH---
Q 040394 282 HLVTALLDMYVKCGNIRDARSVFDEL--------CSIDLVSWTAMIVGYTQSGYPDKALKLFTDKKWA---DFFPNH--- 347 (691)
Q Consensus 282 ~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~--- 347 (691)
..|-.+...+... +...++.+|... ....+...|.+...+...|++.+|...|...... ...+|.
T Consensus 415 ~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~ 493 (1018)
T KOG2002|consen 415 EAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKS 493 (1018)
T ss_pred HHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccccc
Confidence 4444444433332 222223333221 2234445555555555566666666555554433 111222
Q ss_pred --HH-HHHHHHHHhcCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhC
Q 040394 348 --VT-IASVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDD 424 (691)
Q Consensus 348 --~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 424 (691)
.| --.+....-..++.+.|.+.+..+.+..|.-...|-.+..+....+...+|...++.....|
T Consensus 494 ~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d------------- 560 (1018)
T KOG2002|consen 494 TNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID------------- 560 (1018)
T ss_pred chhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-------------
Confidence 11 11122233334455555555555555555444444444433333445555555555544332
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHhHHHHHH
Q 040394 425 NVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMREKNTVTWSAMI 504 (691)
Q Consensus 425 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 504 (691)
..++..++.+...+.+...+..|..-|....+.-...+++...-+|.+.|...- ..|..
T Consensus 561 --~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l------------~~~~r------- 619 (1018)
T KOG2002|consen 561 --SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQAL------------HNPSR------- 619 (1018)
T ss_pred --cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHh------------ccccc-------
Confidence 122222222333344444444444444433332221223333333333222110 00000
Q ss_pred HHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCCh
Q 040394 505 GGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRL 584 (691)
Q Consensus 505 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 584 (691)
..-...+..++|+++|.+.++.. +-|...-|-+--+++..|++.+|..+|.++.+.. .-...+|-.+.++|..+|++
T Consensus 620 n~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~qy 696 (1018)
T KOG2002|consen 620 NPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQGQY 696 (1018)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHHHH
Confidence 00001122344444544444421 1222333333334444555555555555543221 11233444455555555555
Q ss_pred HHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH-----------------
Q 040394 585 EEALEFMENM----PIEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNL----------------- 643 (691)
Q Consensus 585 ~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~----------------- 643 (691)
-.|++.|+.. ..+.+......|..++.+.|++.+|.+.+..+..+.|.++.....++.+
T Consensus 697 ~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~e 776 (1018)
T KOG2002|consen 697 RLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLE 776 (1018)
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHH
Confidence 5555554443 2222334444455555555555555555555555555554443333332
Q ss_pred --HHhCCCcHHHHHHHHHHHhCCCc
Q 040394 644 --YASDGRWIRVNQVRELMKQRGLS 666 (691)
Q Consensus 644 --~~~~g~~~~A~~~~~~~~~~g~~ 666 (691)
....+..+.|.++|..|...+-+
T Consensus 777 ev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 777 EVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 23334566777777777765543
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=2.7e-18 Score=185.60 Aligned_cols=250 Identities=14% Similarity=0.090 Sum_probs=168.2
Q ss_pred cCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHH
Q 040394 394 CHVIADARYIFETTSEKDVIAWNSIISGLDDNVSP-DAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTAL 472 (691)
Q Consensus 394 ~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 472 (691)
.+++++|...|+.....+ ...| ....+..+...+...|++++|...++...+.. |.....+..+
T Consensus 307 ~~~y~~A~~~~~~al~~~-------------~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~--P~~~~~~~~l 371 (615)
T TIGR00990 307 DESYEEAARAFEKALDLG-------------KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD--PRVTQSYIKR 371 (615)
T ss_pred hhhHHHHHHHHHHHHhcC-------------CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHH
Confidence 356667777776665431 1123 23455566666667777777777777777665 5556667777
Q ss_pred HHHHHhcCCHHHHHHHHHhccc---CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCCH
Q 040394 473 LNFYAKCGDAQSARMVFDAMRE---KNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPN-EVIFTTILSACSHTGMV 548 (691)
Q Consensus 473 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~ 548 (691)
...+...|++++|...|++..+ .+...|..+...+...|++++|+..|++..+. .|+ ...+..+..++.+.|++
T Consensus 372 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~ 449 (615)
T TIGR00990 372 ASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSI 449 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCH
Confidence 7777777777777777776653 24667777777777778888888888777764 343 44555566677777888
Q ss_pred HHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-H-------HHHHHHHHHHhcCCHHH
Q 040394 549 GEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEFMENM-PIEPDV-S-------LFGAFLHGCGLYSRFDL 618 (691)
Q Consensus 549 ~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~l~~~~~~~g~~~~ 618 (691)
++|+..+++..+ ..|+ ...++.+..++...|++++|++.|++. ...|+. . .++.....+...|++++
T Consensus 450 ~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~e 526 (615)
T TIGR00990 450 ASSMATFRRCKK---NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIE 526 (615)
T ss_pred HHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHH
Confidence 888888876643 3444 567777777788888888888877775 333321 1 11122222334578888
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhC
Q 040394 619 GEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQR 663 (691)
Q Consensus 619 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 663 (691)
|..+++++++++|++...+..++.++.+.|++++|++.+++..+.
T Consensus 527 A~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 527 AENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 888888888888887777888888888888888888888777654
No 18
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.86 E-value=9.5e-17 Score=164.63 Aligned_cols=552 Identities=11% Similarity=0.051 Sum_probs=395.3
Q ss_pred ChHHHHHHhccCCCCCcc-hHHHHHHH--HHhCCChhHHHHHHHHHHHcC--CCCCcchHHHHHHHHcccCChhHHHHHH
Q 040394 95 HVKYARSVFDSMPNPDFY-SFQVMIRW--YFLNDLYKDIVEFYKCMRKRL--KEHDNFVFSKVLKACCELRDIDEGMKVH 169 (691)
Q Consensus 95 ~~~~A~~~~~~~~~~~~~-~~~~ll~~--~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 169 (691)
+++.|.+.|..+...+.. ....+.++ ....+++..|+.+|....... .+||+. ..+-.++.+.|+.+.|...|
T Consensus 145 ~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 145 SMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred cHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHH
Confidence 368888888877542221 22233333 456789999999999976543 344543 23335667999999999999
Q ss_pred HHHHHhCCCChhHHHHHHHHhHhcCChH---HHHHHHhcc---CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCC
Q 040394 170 CEIVKVGGPDSFVLTGLVDMYAKCRDIG---SSRQVFDET---LDKNVVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVE 243 (691)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 243 (691)
.+..+..|.++.++-.|.-.-....+.+ .+...+... ...|++..+.|...|.-.|++..+..+...+......
T Consensus 223 ~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 223 ERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 9999999877777777766666555544 444444443 2358899999999999999999999999998765321
Q ss_pred --CChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCCCch--HHHHHHHHHHHhcCCHHHHHHHHHhc---CCCChhHHH
Q 040394 244 --GNQITLGSLVTACAKLRALHQGKWLHGYILKIGIEINS--HLVTALLDMYVKCGNIRDARSVFDEL---CSIDLVSWT 316 (691)
Q Consensus 244 --p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~ 316 (691)
.-...|-.+.+++-..|++++|..+|.+..+. .++. ..+--|...+.+.|+++.+...|+.+ .+.+..+..
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~ 380 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMK 380 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHH
Confidence 12345888999999999999999999887665 3444 34456788999999999999999998 233455666
Q ss_pred HHHHHHHhcC----CchhHHHHHHHhhHCCCCCcHHHHHHHHHHHhcCCChhhHHHHHHH----HHHhCCC-chhHHHHH
Q 040394 317 AMIVGYTQSG----YPDKALKLFTDKKWADFFPNHVTIASVLSASAQLGNLNMGRMVHSL----GIRLGLE-DYTVINAL 387 (691)
Q Consensus 317 ~li~~~~~~g----~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~----~~~~~~~-~~~~~~~l 387 (691)
.|...|...+ ..+.|..++.+.... ..-|...|..+...+.+..-... ..++.. +...+.. .+.+.|.+
T Consensus 381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~-~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNv 458 (1018)
T KOG2002|consen 381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQ-TPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNV 458 (1018)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhH
Confidence 6666676664 456677776665554 23456677666666665544333 544443 3455555 88999999
Q ss_pred HHHhHhcCChHHHHHHHHhCCCC-CchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCch
Q 040394 388 VDMYAKCHVIADARYIFETTSEK-DVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNV 466 (691)
Q Consensus 388 ~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 466 (691)
...+...|++.+|...|+..... ... -| ...|-.++..+--.+....-..++.+.|.+.|..+.+.. |.-.
T Consensus 459 aslhf~~g~~~~A~~~f~~A~~~~~~~-~n-----~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YI 530 (1018)
T KOG2002|consen 459 ASLHFRLGNIEKALEHFKSALGKLLEV-AN-----KDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYI 530 (1018)
T ss_pred HHHHHHhcChHHHHHHHHHHhhhhhhh-cC-----ccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhH
Confidence 99999999999999999987654 000 00 000112333333445556667789999999999999876 5555
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHh
Q 040394 467 YVGTALLNFYAKCGDAQSARMVFDAMRE---KNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEE-VQPNEVIFTTILSAC 542 (691)
Q Consensus 467 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~ 542 (691)
..|.-+..+....+...+|...+....+ .++..|+-+...+.+...+..|.+-|+...+.- ..+|..+...|-..|
T Consensus 531 d~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~ 610 (1018)
T KOG2002|consen 531 DAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVY 610 (1018)
T ss_pred HHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHH
Confidence 5555555444455788899999988774 467778888888888888888888777766532 224554444444433
Q ss_pred cc------------cCCHHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHH
Q 040394 543 SH------------TGMVGEGWKCFYSMCRDFKFVP-SMKHYVCMVDLLARAGRLEEALEFMENM--PIEPDVSLFGAFL 607 (691)
Q Consensus 543 ~~------------~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~ 607 (691)
.. .+..+.|+++|.+.+ ...| |...-|-+.-+++..|++.+|.++|.+. .......+|..+.
T Consensus 611 ~~~l~~~~rn~ek~kk~~~KAlq~y~kvL---~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNla 687 (1018)
T KOG2002|consen 611 IQALHNPSRNPEKEKKHQEKALQLYGKVL---RNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLA 687 (1018)
T ss_pred HHHhcccccChHHHHHHHHHHHHHHHHHH---hcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHH
Confidence 21 345678888888664 3444 4777788888999999999999999998 2333556788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc--CCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhC
Q 040394 608 HGCGLYSRFDLGEVMIKKMLEL--HPDKACYYVLVSNLYASDGRWIRVNQVRELMKQR 663 (691)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 663 (691)
.+|...|++..|+++|+...+. ..+++.+...|+.++.+.|.+.+|.+.+......
T Consensus 688 h~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 688 HCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 9999999999999999998873 3455788899999999999999999998777654
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=8.2e-17 Score=177.15 Aligned_cols=393 Identities=7% Similarity=-0.035 Sum_probs=277.9
Q ss_pred HHHHHHHccCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhc---CCCChhHHHHHHHHHHhcCC
Q 040394 251 SLVTACAKLRALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNIRDARSVFDEL---CSIDLVSWTAMIVGYTQSGY 327 (691)
Q Consensus 251 ~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~ 327 (691)
-.+......|+.++|.+++....... +.+...+..+...+.+.|++++|.++|++. .+.+...+..+...+...|+
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 34444555666666666666665422 334455677777777777777777777775 23345566677777788888
Q ss_pred chhHHHHHHHhhHCCCCCcHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhC
Q 040394 328 PDKALKLFTDKKWADFFPNHVTIASVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETT 407 (691)
Q Consensus 328 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 407 (691)
+++|+..+++.... .|+...+..+..++...|+.++|...++.+.+..+.+..++..+..++...|..++|...++..
T Consensus 99 ~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 99 YDEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 88888888887765 3333226666667778888888888888888888887777777888888889999999888877
Q ss_pred CCCCchhHHHHHHhhhCCCCCCH------HHHHHHHHHHh-----ccCcH---HHHHHHHHHHHHcCCCCCch-hHHH--
Q 040394 408 SEKDVIAWNSIISGLDDNVSPDA------VTLVSVISACA-----SLGAV---QVGSSLHAYSTKQGLLSSNV-YVGT-- 470 (691)
Q Consensus 408 ~~~~~~~~~~li~~~~~~~~p~~------~~~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~~~~~~~~-~~~~-- 470 (691)
... |+. .....++.... ..+++ +.|...++.+.+.-...|.. ..+.
T Consensus 177 ~~~-----------------p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a 239 (765)
T PRK10049 177 NLT-----------------PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRA 239 (765)
T ss_pred CCC-----------------HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHH
Confidence 642 221 01111222221 22233 67888888887642102221 1111
Q ss_pred --HHHHHHHhcCCHHHHHHHHHhcccCC--Hh--HHHHHHHHHhcCCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHH
Q 040394 471 --ALLNFYAKCGDAQSARMVFDAMREKN--TV--TWSAMIGGYGMQGDGGGSLALFSDMLNEEVQP---NEVIFTTILSA 541 (691)
Q Consensus 471 --~l~~~~~~~g~~~~A~~~~~~~~~~~--~~--~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~ 541 (691)
..+..+...|++++|+..|+.+.+.+ .. .-..+...|...|++++|+..|+++.+..... .......+..+
T Consensus 240 ~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a 319 (765)
T PRK10049 240 RIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYS 319 (765)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHH
Confidence 11334567799999999999988632 11 22225778999999999999999988643111 12445566668
Q ss_pred hcccCCHHHHHHHHHHchhhcC----------CCCC---hhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHH
Q 040394 542 CSHTGMVGEGWKCFYSMCRDFK----------FVPS---MKHYVCMVDLLARAGRLEEALEFMENM-P-IEPDVSLFGAF 606 (691)
Q Consensus 542 ~~~~g~~~~A~~~~~~m~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l 606 (691)
+...|++++|.+.++.+..... -.|+ ...+..+...+...|+.++|++.++++ . .+.+...+..+
T Consensus 320 ~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~l 399 (765)
T PRK10049 320 LLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDY 399 (765)
T ss_pred HHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 8999999999999998854311 1123 224556778899999999999999998 3 34456788889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhC
Q 040394 607 LHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQR 663 (691)
Q Consensus 607 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 663 (691)
...+...|++++|++.++++++++|++...+..++..+...|++++|...++.+++.
T Consensus 400 A~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 400 ASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999875
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=2.7e-18 Score=176.43 Aligned_cols=290 Identities=11% Similarity=0.086 Sum_probs=155.0
Q ss_pred cCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhccCCC-C------hhhHHHHHHHHHhCCChhHHH
Q 040394 159 LRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDETLDK-N------VVSWTSMIAGYVQNDCAQEGL 231 (691)
Q Consensus 159 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~------~~~~~~li~~~~~~g~~~~A~ 231 (691)
.|++++|...|+++.+.++.+..++..+...+...|++++|..+++.+... + ...+..+...|.+.|++++|.
T Consensus 48 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~ 127 (389)
T PRK11788 48 NEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAE 127 (389)
T ss_pred cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 344444444444444443334444444444444444444444444433221 0 123444444555555555555
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCCCc----hHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 040394 232 VLFNRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIGIEIN----SHLVTALLDMYVKCGNIRDARSVFDEL 307 (691)
Q Consensus 232 ~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~ 307 (691)
.+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|...|+++
T Consensus 128 ~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 206 (389)
T PRK11788 128 ELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKA 206 (389)
T ss_pred HHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 5555554321 12334444555555555555555555555544332221 112344555555666666666666655
Q ss_pred CC---CChhHHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCcHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCchhHH
Q 040394 308 CS---IDLVSWTAMIVGYTQSGYPDKALKLFTDKKWADFFPNHVTIASVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVI 384 (691)
Q Consensus 308 ~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 384 (691)
.+ .+...+..+...+.+.|++++|.++++++...+......++..+..++...|++++|...++.+.+..+.. ..+
T Consensus 207 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~-~~~ 285 (389)
T PRK11788 207 LAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA-DLL 285 (389)
T ss_pred HhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-hHH
Confidence 21 23345555666666666666666666666654322223445556666666666666666666666555443 233
Q ss_pred HHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhc---cCcHHHHHHHHHHHHHcCC
Q 040394 385 NALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACAS---LGAVQVGSSLHAYSTKQGL 461 (691)
Q Consensus 385 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~ 461 (691)
..++..+.+.|++++|..+++++.+ ..|+..++..++..+.. .|+.+++..+++.+.+.++
T Consensus 286 ~~la~~~~~~g~~~~A~~~l~~~l~----------------~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (389)
T PRK11788 286 LALAQLLEEQEGPEAAQALLREQLR----------------RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQL 349 (389)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH----------------hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence 6677777777888888887777654 34777777777766654 4477778888887777665
Q ss_pred CCCchh
Q 040394 462 LSSNVY 467 (691)
Q Consensus 462 ~~~~~~ 467 (691)
.+++.
T Consensus 350 -~~~p~ 354 (389)
T PRK11788 350 -KRKPR 354 (389)
T ss_pred -hCCCC
Confidence 44443
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=3e-17 Score=176.52 Aligned_cols=323 Identities=8% Similarity=-0.044 Sum_probs=173.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHhc---CCCChhHHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCc-HHHHHHHHHHHhcCC
Q 040394 286 ALLDMYVKCGNIRDARSVFDEL---CSIDLVSWTAMIVGYTQSGYPDKALKLFTDKKWADFFPN-HVTIASVLSASAQLG 361 (691)
Q Consensus 286 ~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~ 361 (691)
.++..+.+.|++++|..+++.. ...+...+..++.+....|++++|.+.++++... .|+ ...+..+...+...|
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcC
Confidence 3445555666666666666555 2223334444445555566666666666666554 332 334444555566666
Q ss_pred ChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCH-HHHHHHHHHH
Q 040394 362 NLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDA-VTLVSVISAC 440 (691)
Q Consensus 362 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~-~~~~~ll~~~ 440 (691)
++++|...++.+.+..+.+...+..+...+...|++++|...++.+... .|+. ..+..+ ..+
T Consensus 125 ~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~----------------~P~~~~a~~~~-~~l 187 (656)
T PRK15174 125 QYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE----------------VPPRGDMIATC-LSF 187 (656)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh----------------CCCCHHHHHHH-HHH
Confidence 6666666666666665555556666666666666666666666554322 1222 222222 234
Q ss_pred hccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHhHHHHHHHHHhcCCChHH--
Q 040394 441 ASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE---KNTVTWSAMIGGYGMQGDGGG-- 515 (691)
Q Consensus 441 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~-- 515 (691)
...|++++|...++.+.+... .++......+...+...|++++|...++...+ .+...+..+...+...|++++
T Consensus 188 ~~~g~~~eA~~~~~~~l~~~~-~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~ 266 (656)
T PRK15174 188 LNKSRLPEDHDLARALLPFFA-LERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAK 266 (656)
T ss_pred HHcCCHHHHHHHHHHHHhcCC-CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhH
Confidence 555666666666666555432 22233333444555566666666666665543 134455556666666666654
Q ss_pred --HHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHH
Q 040394 516 --SLALFSDMLNEEVQPN-EVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEFM 591 (691)
Q Consensus 516 --A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~ 591 (691)
|...+++..+. .|+ ...+..+...+...|++++|...+++... ..|+ ...+..+..+|.+.|++++|++.+
T Consensus 267 ~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA~~~l 341 (656)
T PRK15174 267 LQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAASDEF 341 (656)
T ss_pred HHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 56666666553 333 34555555566666666666666665432 3344 344455556666666666666666
Q ss_pred HhC-CCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 040394 592 ENM-PIEPDVSL-FGAFLHGCGLYSRFDLGEVMIKKMLELHPDK 633 (691)
Q Consensus 592 ~~~-~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 633 (691)
+++ ...|+... +..+..++...|+.++|...++++++..|++
T Consensus 342 ~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 342 VQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 655 33444322 2223444555666666666666666666664
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=3.5e-17 Score=176.89 Aligned_cols=91 Identities=10% Similarity=0.077 Sum_probs=72.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhc
Q 040394 114 FQVMIRWYFLNDLYKDIVEFYKCMRKRLKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKC 193 (691)
Q Consensus 114 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (691)
+......+.+.|++++|+..|++.++. .|+...|..+..++.+.|++++|...++..++..+.+..++..+..+|...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 445667778888899999988888764 567777888888888888888888888888888777888888888888888
Q ss_pred CChHHHHHHHhcc
Q 040394 194 RDIGSSRQVFDET 206 (691)
Q Consensus 194 g~~~~A~~~~~~~ 206 (691)
|++++|..-|...
T Consensus 208 g~~~eA~~~~~~~ 220 (615)
T TIGR00990 208 GKYADALLDLTAS 220 (615)
T ss_pred CCHHHHHHHHHHH
Confidence 8888887766543
No 23
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.83 E-value=1.1e-13 Score=135.95 Aligned_cols=573 Identities=10% Similarity=0.034 Sum_probs=450.4
Q ss_pred cCchhHHHHHHHHHHhCCCCchhhhHHHHHHhcCCChHHHHHHhccCCC---CCcchHHHHH-------------H----
Q 040394 60 KSTGSLKAFHALLIVDGLTNDKCNTKLVSMYGSFGHVKYARSVFDSMPN---PDFYSFQVMI-------------R---- 119 (691)
Q Consensus 60 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll-------------~---- 119 (691)
+++..|+-+++.+.+..+.+.+-|-.-.+.-...|++..|+.+..+-.+ .+...|---+ +
T Consensus 265 ~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiRLhp~d~aK~vvA~Avr~ 344 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIRLHPPDVAKTVVANAVRF 344 (913)
T ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence 5566788888888888877666666666777778888888887764321 2222222111 1
Q ss_pred ------HHHhCC----ChhHHHHHHHHHHHcCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHH
Q 040394 120 ------WYFLND----LYKDIVEFYKCMRKRLKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDM 189 (691)
Q Consensus 120 ------~~~~~~----~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 189 (691)
.++++- +...=..++++..+. ++.++..|. +.....+.+.|..++.+.++.-+.+...|.+
T Consensus 345 ~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWK----aAVelE~~~darilL~rAveccp~s~dLwlA---- 415 (913)
T KOG0495|consen 345 LPTSVRLWLKAADLESDTKNKKRVLRKALEH-IPRSVRLWK----AAVELEEPEDARILLERAVECCPQSMDLWLA---- 415 (913)
T ss_pred CCCChhhhhhHHhhhhHHHHHHHHHHHHHHh-CCchHHHHH----HHHhccChHHHHHHHHHHHHhccchHHHHHH----
Confidence 111111 112222334444443 233333333 3334556666888888888776666666654
Q ss_pred hHhcCChHHHHHHHhcc---CCCChhhHHHHHHHHHhCCChhHHHHHHHH----HHhCCCCCChhhHHHHHHHHHccCCh
Q 040394 190 YAKCRDIGSSRQVFDET---LDKNVVSWTSMIAGYVQNDCAQEGLVLFNR----MREGFVEGNQITLGSLVTACAKLRAL 262 (691)
Q Consensus 190 ~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~~~~p~~~t~~~li~~~~~~~~~ 262 (691)
|.+..-++.|.++++.. ...+...|.+....--.+|+.+...+++++ +..+|+..+...|..=...|-..|..
T Consensus 416 larLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv 495 (913)
T KOG0495|consen 416 LARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSV 495 (913)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCCh
Confidence 45666788888888765 445778888877777889999988888765 45688999999998888899999999
Q ss_pred hhHHHHHHHHHHHCCCCc--hHHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCchhHHHHHHH
Q 040394 263 HQGKWLHGYILKIGIEIN--SHLVTALLDMYVKCGNIRDARSVFDELC---SIDLVSWTAMIVGYTQSGYPDKALKLFTD 337 (691)
Q Consensus 263 ~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 337 (691)
-....|....+..|+.-. ..+|..-...|.+.+.++-|..+|.... ..+...|...+..--..|..++...+|++
T Consensus 496 ~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqk 575 (913)
T KOG0495|consen 496 ITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQK 575 (913)
T ss_pred hhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 999999999998887643 4688888999999999999999998773 34667788887777788999999999999
Q ss_pred hhHCCCCCcHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHH
Q 040394 338 KKWADFFPNHVTIASVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNS 417 (691)
Q Consensus 338 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 417 (691)
.... ++-....|..........|++..|+.++..+.+..+.+...+-+-+........++.|..+|.+...
T Consensus 576 av~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~-------- 646 (913)
T KOG0495|consen 576 AVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS-------- 646 (913)
T ss_pred HHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--------
Confidence 8876 3344556666667888889999999999999999999999999999999999999999999999874
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--C
Q 040394 418 IISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE--K 495 (691)
Q Consensus 418 li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~ 495 (691)
..|+...|..-+..-.-.++.++|.+++++..+.- |.-...|-.+.+.+-+.++++.|...|..-.+ |
T Consensus 647 --------~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP 716 (913)
T KOG0495|consen 647 --------ISGTERVWMKSANLERYLDNVEEALRLLEEALKSF--PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCP 716 (913)
T ss_pred --------cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCC
Confidence 46888888877777778899999999999998876 78888999999999999999999999987765 3
Q ss_pred -CHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHH
Q 040394 496 -NTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCM 574 (691)
Q Consensus 496 -~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l 574 (691)
.+..|-.|...--+.|.+-.|..++++..-.+ +-|...|...|+.-.+.|+.+.|..++.+..++ ++.+...|..-
T Consensus 717 ~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEa 793 (913)
T KOG0495|consen 717 NSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEA 793 (913)
T ss_pred CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHH
Confidence 56788888888888999999999999998764 456678888999999999999999998877555 44457778888
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHH
Q 040394 575 VDLLARAGRLEEALEFMENMPIEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVN 654 (691)
Q Consensus 575 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 654 (691)
|....+.++-....+.+++.. .|......+...+....++++|...|+++...+|++..+|..+-..+...|.-++-.
T Consensus 794 I~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~k 871 (913)
T KOG0495|consen 794 IWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQK 871 (913)
T ss_pred HHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHH
Confidence 888888888888888888764 455666777888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC
Q 040394 655 QVRELMKQRGL 665 (691)
Q Consensus 655 ~~~~~~~~~g~ 665 (691)
+++.+......
T Consensus 872 ev~~~c~~~EP 882 (913)
T KOG0495|consen 872 EVLKKCETAEP 882 (913)
T ss_pred HHHHHHhccCC
Confidence 99988877643
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=1.4e-15 Score=163.87 Aligned_cols=188 Identities=10% Similarity=0.042 Sum_probs=104.4
Q ss_pred HHHHHhcCCHHHHHHHHHhcccC----CHhHHHHHHHHHhcCCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHhc
Q 040394 473 LNFYAKCGDAQSARMVFDAMREK----NTVTWSAMIGGYGMQGDGGGSLALFSDMLNEE-----VQPNEVIFTTILSACS 543 (691)
Q Consensus 473 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-----~~p~~~~~~~ll~~~~ 543 (691)
+.++.+.|++.++++.|+.+..+ ...+-..+..+|...+++++|+.+++++.... ..++......|.-++.
T Consensus 299 l~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~l 378 (822)
T PRK14574 299 LGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLN 378 (822)
T ss_pred HHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHH
Confidence 34455566666666666666632 12233445666666666666666666665432 1122222345555666
Q ss_pred ccCCHHHHHHHHHHchhhcC----------CCCC---hhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHH
Q 040394 544 HTGMVGEGWKCFYSMCRDFK----------FVPS---MKHYVCMVDLLARAGRLEEALEFMENM--PIEPDVSLFGAFLH 608 (691)
Q Consensus 544 ~~g~~~~A~~~~~~m~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~ 608 (691)
..+++++|..+++.+.+... -.|| ...+..++..+...|++.+|++.++++ ..+-|......+..
T Consensus 379 d~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~ 458 (822)
T PRK14574 379 ESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALAS 458 (822)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 66666666666666633111 0122 223334455556666666666666666 22334555666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHH
Q 040394 609 GCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELM 660 (691)
Q Consensus 609 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 660 (691)
.+...|.+.+|++.++.+..++|++..+....+.++...|+|.+|..+.+.+
T Consensus 459 v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 459 IYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred HHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666665555444
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.82 E-value=1.8e-16 Score=170.67 Aligned_cols=348 Identities=9% Similarity=-0.034 Sum_probs=259.5
Q ss_pred cCCChHHHHHHhccCCC------CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHcccCChhHH
Q 040394 92 SFGHVKYARSVFDSMPN------PDFYSFQVMIRWYFLNDLYKDIVEFYKCMRKRLKEHDNFVFSKVLKACCELRDIDEG 165 (691)
Q Consensus 92 ~~g~~~~A~~~~~~~~~------~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 165 (691)
++.+++.---+|...++ .+....-.++..+.+.|++++|..+++...... +-+...+..++.+....|+.++|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHH
Confidence 44455555555554443 222344556667788899999999988888763 33344555556666778999999
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhccCC--C-ChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 040394 166 MKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDETLD--K-NVVSWTSMIAGYVQNDCAQEGLVLFNRMREGFV 242 (691)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 242 (691)
...++.+.+..|.+...+..+...+...|++++|...+++... | +...+..+...+...|++++|...++++.....
T Consensus 96 ~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P 175 (656)
T PRK15174 96 LQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP 175 (656)
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC
Confidence 9999999988888888888889999999999999998888744 3 566788888888999999999998888866543
Q ss_pred CCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHH
Q 040394 243 EGNQITLGSLVTACAKLRALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNIRDARSVFDELC---SIDLVSWTAMI 319 (691)
Q Consensus 243 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li 319 (691)
.+. ..+.. +..+...|++++|...++.+.+....++...+..+...+.+.|++++|...|++.. ..+...+..+.
T Consensus 176 ~~~-~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg 253 (656)
T PRK15174 176 PRG-DMIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLG 253 (656)
T ss_pred CCH-HHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 322 22322 23467888999999988888776544445555566777888899999998888872 23556777888
Q ss_pred HHHHhcCCchh----HHHHHHHhhHCCCCC-cHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhc
Q 040394 320 VGYTQSGYPDK----ALKLFTDKKWADFFP-NHVTIASVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKC 394 (691)
Q Consensus 320 ~~~~~~g~~~~----a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 394 (691)
..+...|++++ |...+++.... .| +...+..+...+...|++++|...++.+.+..+.+..++..+..+|.+.
T Consensus 254 ~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~ 331 (656)
T PRK15174 254 LAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQV 331 (656)
T ss_pred HHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 88888998885 78888887765 34 4567777788888889999999999998888888777888888899999
Q ss_pred CChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 040394 395 HVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAV-TLVSVISACASLGAVQVGSSLHAYSTKQG 460 (691)
Q Consensus 395 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 460 (691)
|++++|...|+++... .|+.. .+..+..++...|+.++|...|+...+..
T Consensus 332 G~~~eA~~~l~~al~~----------------~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 332 GQYTAASDEFVQLARE----------------KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred CCHHHHHHHHHHHHHh----------------CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999999998887653 34433 33344567788899999999998887765
No 26
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.82 E-value=5.6e-15 Score=150.88 Aligned_cols=349 Identities=13% Similarity=0.061 Sum_probs=199.9
Q ss_pred ChhHHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCcHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCchhHHHHHHHH
Q 040394 311 DLVSWTAMIVGYTQSGYPDKALKLFTDKKWADFFPNHVTIASVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVINALVDM 390 (691)
Q Consensus 311 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 390 (691)
++..|.-+..+|.+.|++.+|+.+|..+.....--+...|..+..++...|..++|.+.+..++...|.+..+.-.|...
T Consensus 413 ~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl 492 (895)
T KOG2076|consen 413 DVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASL 492 (895)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHH
Confidence 45578888899999999999999999988875555677888888999999999999999999999999988888999999
Q ss_pred hHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC---------
Q 040394 391 YAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGL--------- 461 (691)
Q Consensus 391 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------- 461 (691)
+.+.|+.++|.+.++.+...|.. .+-..+..|+..........+...|+.++-..+...|+....
T Consensus 493 ~~~~g~~EkalEtL~~~~~~D~~------~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~ 566 (895)
T KOG2076|consen 493 YQQLGNHEKALETLEQIINPDGR------NAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRN 566 (895)
T ss_pred HHhcCCHHHHHHHHhcccCCCcc------chhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 99999999999999997755421 001113445555555555566666666654444333332110
Q ss_pred ------------CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc--------cCCHh----HHHHHHHHHhcCCChHHHH
Q 040394 462 ------------LSSNVYVGTALLNFYAKCGDAQSARMVFDAMR--------EKNTV----TWSAMIGGYGMQGDGGGSL 517 (691)
Q Consensus 462 ------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~----~~~~li~~~~~~~~~~~A~ 517 (691)
.+........++.+-.+.++.....+-...-. .-+.. .+.-++.++++.+.+++|+
T Consensus 567 ~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl 646 (895)
T KOG2076|consen 567 KKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEAL 646 (895)
T ss_pred HHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 00111111112222222222111111111000 00111 1223445555566666666
Q ss_pred HHHHHHHHCCC--CCCH---HHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC---hhHHHHHH--------------
Q 040394 518 ALFSDMLNEEV--QPNE---VIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS---MKHYVCMV-------------- 575 (691)
Q Consensus 518 ~~~~~m~~~g~--~p~~---~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~---~~~~~~li-------------- 575 (691)
.+...+..... .++. ..-...+.++...+++..|...++.|....+...+ ...|+...
T Consensus 647 ~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R 726 (895)
T KOG2076|consen 647 SVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLR 726 (895)
T ss_pred HHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555554321 1111 11122333445555566665555555444333222 12222111
Q ss_pred ---------------------HHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHH-HHH----------hcCCHHHHHHH
Q 040394 576 ---------------------DLLARAGRLEEALEFMENM-PIEPDVSLFGAFLH-GCG----------LYSRFDLGEVM 622 (691)
Q Consensus 576 ---------------------~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~-~~~----------~~g~~~~A~~~ 622 (691)
+.+..++.+..|+..+-+. ...||....+.++. ++. ++-..-++..+
T Consensus 727 ~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~af 806 (895)
T KOG2076|consen 727 LIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAF 806 (895)
T ss_pred HHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 2234455666665554443 33445333332222 221 22234556666
Q ss_pred HHHHHhcCCC--CchhHHHHHHHHHhCCCcHHHHHHHHHHHhCCC
Q 040394 623 IKKMLELHPD--KACYYVLVSNLYASDGRWIRVNQVRELMKQRGL 665 (691)
Q Consensus 623 ~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 665 (691)
+++..++.-. ...+.+.++.+|-..|-..-|..+|++.++...
T Consensus 807 L~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p 851 (895)
T KOG2076|consen 807 LKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSP 851 (895)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCc
Confidence 6666664433 467888999999999999999999999998643
No 27
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.80 E-value=1.5e-15 Score=167.14 Aligned_cols=382 Identities=8% Similarity=-0.062 Sum_probs=206.0
Q ss_pred cCchhHHHHHHHHHHhCCCCchhhhHHHHHHhcCCChHHHHHHhccCC---CCCcchHHHHHHHHHhCCChhHHHHHHHH
Q 040394 60 KSTGSLKAFHALLIVDGLTNDKCNTKLVSMYGSFGHVKYARSVFDSMP---NPDFYSFQVMIRWYFLNDLYKDIVEFYKC 136 (691)
Q Consensus 60 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 136 (691)
|+.+.|..++.......+.+...+..+...+.+.|++++|..+|++.. ..+...+..+...+...|++++|+..+++
T Consensus 29 g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~ 108 (765)
T PRK10049 29 GQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQ 108 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666666666655332222256667777777777777777777642 23344556666666777777777777777
Q ss_pred HHHcCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhccCC-CCh----
Q 040394 137 MRKRLKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDETLD-KNV---- 211 (691)
Q Consensus 137 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~---- 211 (691)
..+. .+.+.. +..+..++...|+.++|...++++.+..|.+...+..+...+...+..++|++.++.... |+.
T Consensus 109 ~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l 186 (765)
T PRK10049 109 LVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDL 186 (765)
T ss_pred HHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHH
Confidence 7665 233334 666666666777777777777777777666666666666677677777777777766544 110
Q ss_pred --hhHHHHHHHHH-----hCCCh---hHHHHHHHHHHhC-CCCCChh-hHH----HHHHHHHccCChhhHHHHHHHHHHH
Q 040394 212 --VSWTSMIAGYV-----QNDCA---QEGLVLFNRMREG-FVEGNQI-TLG----SLVTACAKLRALHQGKWLHGYILKI 275 (691)
Q Consensus 212 --~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-~~~p~~~-t~~----~li~~~~~~~~~~~a~~~~~~~~~~ 275 (691)
.....++.... ..+++ ++|++.++.+.+. ...|+.. .+. ..+.++...|+.++|...|+.+.+.
T Consensus 187 ~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~ 266 (765)
T PRK10049 187 EADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAE 266 (765)
T ss_pred HHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Confidence 01111222221 11223 5566666666543 1222211 111 1123334556667777777776665
Q ss_pred CCC-CchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------hhHHHHHHHHHHhcCCchhHHHHHHHhhHCCC----
Q 040394 276 GIE-INSHLVTALLDMYVKCGNIRDARSVFDELCSID-------LVSWTAMIVGYTQSGYPDKALKLFTDKKWADF---- 343 (691)
Q Consensus 276 g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---- 343 (691)
+.. |+. ....+...|...|++++|+..|+++...+ ...+..+..++...|++++|.++++.+.....
T Consensus 267 ~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~ 345 (765)
T PRK10049 267 GQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLR 345 (765)
T ss_pred CCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEe
Confidence 422 221 11223556666677777777666652211 12344455556666777777766666655411
Q ss_pred -------CCcH---HHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCch
Q 040394 344 -------FPNH---VTIASVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVI 413 (691)
Q Consensus 344 -------~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 413 (691)
.|+. ..+..+...+...|++++|...++.+....|.+...+..+...+...|++++|...+++....
T Consensus 346 ~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--- 422 (765)
T PRK10049 346 LYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVL--- 422 (765)
T ss_pred ecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---
Confidence 1221 122333445555555666665555555555555555555555555555555555555555432
Q ss_pred hHHHHHHhhhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 040394 414 AWNSIISGLDDNVSPD-AVTLVSVISACASLGAVQVGSSLHAYSTKQG 460 (691)
Q Consensus 414 ~~~~li~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 460 (691)
.|+ ...+......+...|+++.|+.+++.+.+..
T Consensus 423 -------------~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 423 -------------EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred -------------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 233 2333333444455555555555555555543
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=6.4e-15 Score=137.47 Aligned_cols=320 Identities=18% Similarity=0.197 Sum_probs=233.8
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHc--ccCChhHH-HHHHHHHHHhCCCChhHHHHHHH
Q 040394 112 YSFQVMIRWYFLNDLYKDIVEFYKCMRKRLKEHDNFVFSKVLKACC--ELRDIDEG-MKVHCEIVKVGGPDSFVLTGLVD 188 (691)
Q Consensus 112 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~--~~~~~~~a-~~~~~~~~~~~~~~~~~~~~l~~ 188 (691)
.+=|.|+. +..+|.++++.-+|+.|.+.|+..+...-..+++..+ ...++--| ++.|-.|.+.|-.+..+|
T Consensus 117 ~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW----- 190 (625)
T KOG4422|consen 117 ETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW----- 190 (625)
T ss_pred cchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc-----
Confidence 35566665 4567899999999999999998888877777765544 33333222 233334444443344454
Q ss_pred HhHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHH
Q 040394 189 MYAKCRDIGSSRQVFDETLDKNVVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRALHQGKWL 268 (691)
Q Consensus 189 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~ 268 (691)
+.|++.+ ++-+.......+|.+||.++|+--..++|.++|++-.+...+.+..+||.+|.+-.-..+ .++
T Consensus 191 ---K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~L 260 (625)
T KOG4422|consen 191 ---KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKL 260 (625)
T ss_pred ---ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHH
Confidence 3455444 555555667789999999999999999999999999998899999999999988654333 789
Q ss_pred HHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHH----Hhc----CCCChhHHHHHHHHHHhcCCchh-HHHHHHHhh
Q 040394 269 HGYILKIGIEINSHLVTALLDMYVKCGNIRDARSVF----DEL----CSIDLVSWTAMIVGYTQSGYPDK-ALKLFTDKK 339 (691)
Q Consensus 269 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~~----~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~ 339 (691)
..+|....+.||..|+|+++.+..+.|+++.|...+ .+| .+|...+|..+|..+++.++..+ +..++.+..
T Consensus 261 v~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~ 340 (625)
T KOG4422|consen 261 VAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQ 340 (625)
T ss_pred HHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHH
Confidence 999999999999999999999999999988765544 444 66888889888888888887754 344444433
Q ss_pred ----HCCCCC----cHHHHHHHHHHHhcCCChhhHHHHHHHHHHh------CCC--chhHHHHHHHHhHhcCChHHHHHH
Q 040394 340 ----WADFFP----NHVTIASVLSASAQLGNLNMGRMVHSLGIRL------GLE--DYTVINALVDMYAKCHVIADARYI 403 (691)
Q Consensus 340 ----~~g~~p----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~--~~~~~~~l~~~~~~~g~~~~a~~~ 403 (691)
.+-++| |...|...+..|....+.+.|.++....... |+. ...-|..+..+.++....+.-...
T Consensus 341 N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~ 420 (625)
T KOG4422|consen 341 NSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKW 420 (625)
T ss_pred HhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333 4456777778888888888888876655432 222 333456677777888888888888
Q ss_pred HHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC
Q 040394 404 FETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGL 461 (691)
Q Consensus 404 ~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 461 (691)
|+.|... -+-|+..+...++++....+.++..-+++..++..|.
T Consensus 421 Y~~lVP~--------------~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 421 YEDLVPS--------------AYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred HHHhccc--------------eecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 8888766 4668888888888888888888888888888887774
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.80 E-value=3e-14 Score=145.61 Aligned_cols=592 Identities=12% Similarity=0.096 Sum_probs=383.9
Q ss_pred cCchhHHHHHHHHHHhCCCCchhhhHHHHHHhcCCChHHHHHHhccC---CCCCcchHHHHHHHHHhCCChhHHHHHHHH
Q 040394 60 KSTGSLKAFHALLIVDGLTNDKCNTKLVSMYGSFGHVKYARSVFDSM---PNPDFYSFQVMIRWYFLNDLYKDIVEFYKC 136 (691)
Q Consensus 60 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 136 (691)
|+.+.|..+..++++..+.....|..|..+|...|+.+.+...+--. ...|...|..+.....+.|++++|.-.|.+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 99999999999999998877779999999999999999999877543 345667899999999999999999999999
Q ss_pred HHHcCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCC-ChhHHHHH----HHHhHhcCChHHHHHHHhccCC---
Q 040394 137 MRKRLKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGP-DSFVLTGL----VDMYAKCRDIGSSRQVFDETLD--- 208 (691)
Q Consensus 137 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~~--- 208 (691)
.++.. +++...+-.-...|-+.|+...|..-|.++....+| |..-...+ +..+...++-+.|.+.++....
T Consensus 233 AI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~ 311 (895)
T KOG2076|consen 233 AIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK 311 (895)
T ss_pred HHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 99873 455555555667788999999999999999998886 54444433 5556677888999988887644
Q ss_pred --CChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChh----------------------hHH----HHHHHHHccC
Q 040394 209 --KNVVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQI----------------------TLG----SLVTACAKLR 260 (691)
Q Consensus 209 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----------------------t~~----~li~~~~~~~ 260 (691)
-+...++.++..+.+...++.|......+......+|.. .|. -++-++.+.+
T Consensus 312 ~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~ 391 (895)
T KOG2076|consen 312 DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLK 391 (895)
T ss_pred ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhccc
Confidence 245678999999999999999999988887622222221 111 2333445666
Q ss_pred ChhhHHHHHHHHHHHCCCC--chHHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHhcCCchhHHHH
Q 040394 261 ALHQGKWLHGYILKIGIEI--NSHLVTALLDMYVKCGNIRDARSVFDELCS----IDLVSWTAMIVGYTQSGYPDKALKL 334 (691)
Q Consensus 261 ~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~ 334 (691)
..+....+.....+..+.| +...|.-+.++|...|++.+|+++|..+.. .+...|--+...|...|.+++|.+.
T Consensus 392 ~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~ 471 (895)
T KOG2076|consen 392 ERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEF 471 (895)
T ss_pred ccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHH
Confidence 6666777777777776444 567899999999999999999999999833 4677899999999999999999999
Q ss_pred HHHhhHCCCCCcH-HHHHHHHHHHhcCCChhhHHHHHHHHHHhC--------CC-chhHHHHHHHHhHhcCChHHHHHHH
Q 040394 335 FTDKKWADFFPNH-VTIASVLSASAQLGNLNMGRMVHSLGIRLG--------LE-DYTVINALVDMYAKCHVIADARYIF 404 (691)
Q Consensus 335 ~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~-~~~~~~~l~~~~~~~g~~~~a~~~~ 404 (691)
|+..... .|+. ..-..|-..+.+.|+.++|.+.++.+...+ .. .........+.+.+.|+.++-..+-
T Consensus 472 y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~ 549 (895)
T KOG2076|consen 472 YEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTA 549 (895)
T ss_pred HHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 9998875 4544 344455667888999999999988855333 11 3444556677888888887754444
Q ss_pred HhCCCCCchhHHHHH----------HhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH------HHHHHcCCCCCch-h
Q 040394 405 ETTSEKDVIAWNSII----------SGLDDNVSPDAVTLVSVISACASLGAVQVGSSLH------AYSTKQGLLSSNV-Y 467 (691)
Q Consensus 405 ~~~~~~~~~~~~~li----------~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~------~~~~~~~~~~~~~-~ 467 (691)
..|.... ....++ .+...+..-...+....+.+-.+.++....++-. .-....+....+. .
T Consensus 550 ~~Lv~~~--~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfe 627 (895)
T KOG2076|consen 550 STLVDDF--LKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFE 627 (895)
T ss_pred HHHHHHH--HHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHH
Confidence 3332210 000000 0000011122222223333333333221111111 1111122201111 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcccC-----CHh----HHHHHHHHHhcCCChHHHHHHHHHHHHC-CC--CCCH-HH
Q 040394 468 VGTALLNFYAKCGDAQSARMVFDAMREK-----NTV----TWSAMIGGYGMQGDGGGSLALFSDMLNE-EV--QPNE-VI 534 (691)
Q Consensus 468 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~----~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~--~p~~-~~ 534 (691)
.+.-++..+++.+++++|+.+...+..- +.. .-...+.+.+..+++..|...++.|+.. ++ .|.. ..
T Consensus 628 l~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l 707 (895)
T KOG2076|consen 628 LFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNL 707 (895)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 3444555666666666666666655532 111 1223344555566666666666666543 10 1111 11
Q ss_pred HHHHHHH-----------------------------------hcccCCHHHHHHHHHHchhhcCCCCChhHHHHHH-HHH
Q 040394 535 FTTILSA-----------------------------------CSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMV-DLL 578 (691)
Q Consensus 535 ~~~ll~~-----------------------------------~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li-~~~ 578 (691)
|+..++. ....+.+..|...+-.. +...|+....+.++ .++
T Consensus 708 ~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra---~~~~pd~Pl~nl~lglaf 784 (895)
T KOG2076|consen 708 WNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRA---FRQNPDSPLINLCLGLAF 784 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHH---HHhCCCCcHHHHHHHHHH
Confidence 2211111 12245566777765533 34567744444332 222
Q ss_pred H----------hcCChHHHHHHHHhC---C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------
Q 040394 579 A----------RAGRLEEALEFMENM---P-IEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDK----------- 633 (691)
Q Consensus 579 ~----------~~g~~~~A~~~~~~~---~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----------- 633 (691)
. |+-..-.+..++++. . ......++-.+.++|-.-|=...|..+|++++++.|.+
T Consensus 785 ih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dL 864 (895)
T KOG2076|consen 785 IHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDL 864 (895)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccH
Confidence 1 122334556666555 1 11245577779999999999999999999999986543
Q ss_pred -chhHHHHHHHHHhCCCcHHHHHHHHH
Q 040394 634 -ACYYVLVSNLYASDGRWIRVNQVREL 659 (691)
Q Consensus 634 -~~~~~~l~~~~~~~g~~~~A~~~~~~ 659 (691)
..+-+.|.-+|..+|+.+.|..++++
T Consensus 865 rkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 865 RKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred HHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 12345677889999999999998864
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=1.6e-14 Score=155.78 Aligned_cols=438 Identities=9% Similarity=-0.000 Sum_probs=302.3
Q ss_pred HcccCChhHHHHHHHHHHHhCCCCh-hHHHHHHHHhHhcCChHHHHHHHhccCCCChh-hHHHH--HHHHHhCCChhHHH
Q 040394 156 CCELRDIDEGMKVHCEIVKVGGPDS-FVLTGLVDMYAKCRDIGSSRQVFDETLDKNVV-SWTSM--IAGYVQNDCAQEGL 231 (691)
Q Consensus 156 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l--i~~~~~~g~~~~A~ 231 (691)
..+.|+++.|...|++..+..+.+. .++ .++..+...|+.++|+..+++...|+.. .+..+ ...+...|++++|+
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3478888999999999888887753 444 8888888889999999999988776443 33333 45777789999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC--C
Q 040394 232 VLFNRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNIRDARSVFDELC--S 309 (691)
Q Consensus 232 ~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~ 309 (691)
++|+++.+.... +...+..++..+...++.++|.+.++.+... .|+...+..++..+...++..+|++.++++. .
T Consensus 123 ely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 123 ALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 999999876433 3455566677777888888888888887665 3455555444444444556656888888872 2
Q ss_pred C-ChhHHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCcHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCchhHHHHHH
Q 040394 310 I-DLVSWTAMIVGYTQSGYPDKALKLFTDKKWADFFPNHVTIASVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVINALV 388 (691)
Q Consensus 310 ~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 388 (691)
| +...+..++.++.+.|-...|.++..+-... +.|.. ...+-. +.+.+ .++.+..
T Consensus 200 P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~--~~~l~~--------~~~a~----~vr~a~~--------- 255 (822)
T PRK14574 200 PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEH--YRQLER--------DAAAE----QVRMAVL--------- 255 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHH--HHHHHH--------HHHHH----HHhhccc---------
Confidence 3 4556677778888888888888776652211 11111 111100 00000 0110100
Q ss_pred HHhHhcC---ChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHH----HHHHHHHHHhccCcHHHHHHHHHHHHHcCC
Q 040394 389 DMYAKCH---VIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAV----TLVSVISACASLGAVQVGSSLHAYSTKQGL 461 (691)
Q Consensus 389 ~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 461 (691)
..-...+ -.+.|+.-++.+...- . ..++... +..-.+-++...++..++.+.++.+...+.
T Consensus 256 ~~~~~~~r~~~~d~ala~~~~l~~~~-----------~-~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~ 323 (822)
T PRK14574 256 PTRSETERFDIADKALADYQNLLTRW-----------G-KDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGY 323 (822)
T ss_pred ccccchhhHHHHHHHHHHHHHHHhhc-----------c-CCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCC
Confidence 0000011 1233444444333210 0 1122222 223445677889999999999999999886
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---------CHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCC----
Q 040394 462 LSSNVYVGTALLNFYAKCGDAQSARMVFDAMREK---------NTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEV---- 528 (691)
Q Consensus 462 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~---- 528 (691)
+....+-..+.++|...+++++|+.+++.+..+ +......|..+|...+++++|..+++++.+.-.
T Consensus 324 -~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~ 402 (822)
T PRK14574 324 -KMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVG 402 (822)
T ss_pred -CCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEe
Confidence 666778889999999999999999999998542 233357789999999999999999999998311
Q ss_pred -------CCC--HHH-HHHHHHHhcccCCHHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 040394 529 -------QPN--EVI-FTTILSACSHTGMVGEGWKCFYSMCRDFKFVP-SMKHYVCMVDLLARAGRLEEALEFMENM-PI 596 (691)
Q Consensus 529 -------~p~--~~~-~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 596 (691)
.|| -.. +..++..+...|++.+|++.++++.. ..| |......+.+.+...|++.+|++.++.. ..
T Consensus 403 ~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~---~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 403 VYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS---TAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred ccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 122 232 33455678899999999999999854 345 4788889999999999999999999877 45
Q ss_pred CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhH
Q 040394 597 EPDV-SLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYY 637 (691)
Q Consensus 597 ~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 637 (691)
.|+. .+....+..+...|++++|..+.+.+.+..|+++.+-
T Consensus 480 ~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 480 APRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 6654 5666777788889999999999999999999987544
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.76 E-value=1.1e-14 Score=136.81 Aligned_cols=203 Identities=12% Similarity=0.184 Sum_probs=164.5
Q ss_pred hccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc---cCCHhHHHHHHHHHhcCCChHHHH
Q 040394 441 ASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMR---EKNTVTWSAMIGGYGMQGDGGGSL 517 (691)
Q Consensus 441 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~ 517 (691)
...|+++.|...+++....+. ......|| +.-.+.+.|+.++|+..|-++. ..+......+...|....+...|+
T Consensus 501 f~ngd~dka~~~ykeal~nda-sc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDA-SCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred eecCcHHHHHHHHHHHHcCch-HHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 356788888888888876653 33333333 3445678899999999987765 356777777888888899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcC-CCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 040394 518 ALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFK-FVPSMKHYVCMVDLLARAGRLEEALEFMENM-P 595 (691)
Q Consensus 518 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 595 (691)
+++.+.... ++.|+.....+...|-+.|+-..|.+.+-. .+. ++-+..+...|..-|....-+++|+.+|++. -
T Consensus 579 e~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~yd---syryfp~nie~iewl~ayyidtqf~ekai~y~ekaal 654 (840)
T KOG2003|consen 579 ELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYD---SYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL 654 (840)
T ss_pred HHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhh---cccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 999877664 455677888888899999999999998763 333 4456888888999999999999999999998 5
Q ss_pred CCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCC
Q 040394 596 IEPDVSLFGAFLHGCG-LYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGR 649 (691)
Q Consensus 596 ~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 649 (691)
+.|+..-|..++..|. +.|++.+|.+++++..+..|.+......|..++...|.
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 8899999999998876 68999999999999999999999999999998887774
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.73 E-value=2.8e-11 Score=119.51 Aligned_cols=489 Identities=12% Similarity=0.079 Sum_probs=386.7
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHH
Q 040394 122 FLNDLYKDIVEFYKCMRKRLKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQ 201 (691)
Q Consensus 122 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 201 (691)
......++|.-++.+..+. ++.+. -+.-++++..-++.|.++++...+.-+.+..+|.+-...=-..|+.+...+
T Consensus 387 VelE~~~darilL~rAvec-cp~s~----dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~k 461 (913)
T KOG0495|consen 387 VELEEPEDARILLERAVEC-CPQSM----DLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEK 461 (913)
T ss_pred HhccChHHHHHHHHHHHHh-ccchH----HHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHH
Confidence 3456677788888888876 33333 344566777888999999999888766699999888888888899999888
Q ss_pred HHhccC--------CCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHccCChhhHHHHHHH
Q 040394 202 VFDETL--------DKNVVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGN--QITLGSLVTACAKLRALHQGKWLHGY 271 (691)
Q Consensus 202 ~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~li~~~~~~~~~~~a~~~~~~ 271 (691)
+.++-. .-|...|-.=...+-..|..--+..+......-|+.-. ..|+..-...|.+.+.++-|..+|..
T Consensus 462 ii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~ 541 (913)
T KOG0495|consen 462 IIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAH 541 (913)
T ss_pred HHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHH
Confidence 887642 12555666666677777888888888888777666532 45788888889999999999999998
Q ss_pred HHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhc---CCCChhHHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCcHH
Q 040394 272 ILKIGIEINSHLVTALLDMYVKCGNIRDARSVFDEL---CSIDLVSWTAMIVGYTQSGYPDKALKLFTDKKWADFFPNHV 348 (691)
Q Consensus 272 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 348 (691)
.++- ++.+..+|...+..--..|..+.-..+|++. ++.....|-...+.+...|+...|..++....+.... +..
T Consensus 542 alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-see 619 (913)
T KOG0495|consen 542 ALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEE 619 (913)
T ss_pred HHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHH
Confidence 8765 2446678888887777788999999999887 4456667888888888999999999999988876333 567
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCC
Q 040394 349 TIASVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSP 428 (691)
Q Consensus 349 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p 428 (691)
.+..-+..-.....++.|+.+|......+ ++..+|..-+....-.++.++|.+++++..+. ++.
T Consensus 620 iwlaavKle~en~e~eraR~llakar~~s-gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~---------------fp~ 683 (913)
T KOG0495|consen 620 IWLAAVKLEFENDELERARDLLAKARSIS-GTERVWMKSANLERYLDNVEEALRLLEEALKS---------------FPD 683 (913)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHhccC-CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh---------------CCc
Confidence 78888888889999999999998876632 26677777777888889999999999988764 333
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CHhHHHHHHH
Q 040394 429 DAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE--K-NTVTWSAMIG 505 (691)
Q Consensus 429 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~ 505 (691)
=...|..+.+.+-+.++++.|...|..-.+.- |..+..+..|...=.+.|.+-.|..+++...- | |...|-..|+
T Consensus 684 f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c--P~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir 761 (913)
T KOG0495|consen 684 FHKLWLMLGQIEEQMENIEMAREAYLQGTKKC--PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIR 761 (913)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHhccccC--CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHH
Confidence 34567777888889999999999988777665 78888999999999999999999999998763 3 7789999999
Q ss_pred HHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChH
Q 040394 506 GYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLE 585 (691)
Q Consensus 506 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 585 (691)
.-.+.|+.+.|..+..+..+. ++.+...|..-|....+.++-......++ .+.-|.+..-.+...+....+++
T Consensus 762 ~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALk------kce~dphVllaia~lfw~e~k~~ 834 (913)
T KOG0495|consen 762 MELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALK------KCEHDPHVLLAIAKLFWSEKKIE 834 (913)
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHH------hccCCchhHHHHHHHHHHHHHHH
Confidence 999999999999999888875 55566777777777766666444444444 24667777888888999999999
Q ss_pred HHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 040394 586 EALEFMENM-PIEPDV-SLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSN 642 (691)
Q Consensus 586 ~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 642 (691)
+|.+.|.+. ...||. .+|--+..-+.++|.-++-.+++.+....+|.+...|..+..
T Consensus 835 kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 835 KAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred HHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 999999998 666665 578888888899999999999999999999998888876654
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=5.8e-13 Score=124.62 Aligned_cols=421 Identities=12% Similarity=0.127 Sum_probs=279.1
Q ss_pred HHHhhc--cCchhHHHHHHHHHHhCCCCch-hhhHHHHH--HhcCCChHHH-HHHhccCCC---CCcchHHHHHHHHHhC
Q 040394 54 NLLGLC--KSTGSLKAFHALLIVDGLTNDK-CNTKLVSM--YGSFGHVKYA-RSVFDSMPN---PDFYSFQVMIRWYFLN 124 (691)
Q Consensus 54 ~ll~~~--~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~--~~~~g~~~~A-~~~~~~~~~---~~~~~~~~ll~~~~~~ 124 (691)
+|+.-. +.+..+--+++.+.+.+.+.++ +-..|.+. |-...+..-| ++.|-.|.. .+..+| +.
T Consensus 121 nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW--------K~ 192 (625)
T KOG4422|consen 121 NLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW--------KS 192 (625)
T ss_pred HHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc--------cc
Confidence 344444 6677788888888888887777 55444432 3333333322 334444542 333344 23
Q ss_pred CChhHHHHHHHHHHHcCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCC-ChhHHHHHHHHhHhcCChHHHHHHH
Q 040394 125 DLYKDIVEFYKCMRKRLKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGP-DSFVLTGLVDMYAKCRDIGSSRQVF 203 (691)
Q Consensus 125 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 203 (691)
|.+.+ +|-+. .+-+..||.++|.++|+--..+.|.+++++....... +..++|.+|.+-.-..+ .+++
T Consensus 193 G~vAd---L~~E~----~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv 261 (625)
T KOG4422|consen 193 GAVAD---LLFET----LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLV 261 (625)
T ss_pred ccHHH---HHHhh----cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHH
Confidence 33332 22222 2446678888888888888888888888887766555 88888888876554433 4455
Q ss_pred hcc----CCCChhhHHHHHHHHHhCCChhH----HHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhh-HHHHHHHHHH
Q 040394 204 DET----LDKNVVSWTSMIAGYVQNDCAQE----GLVLFNRMREGFVEGNQITLGSLVTACAKLRALHQ-GKWLHGYILK 274 (691)
Q Consensus 204 ~~~----~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~-a~~~~~~~~~ 274 (691)
.+| ..||..|+|+++.+..+.|+++. |++++.+|++-|+.|...+|..+|..+++.++..+ +..++.++..
T Consensus 262 ~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N 341 (625)
T KOG4422|consen 262 AEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQN 341 (625)
T ss_pred HHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHH
Confidence 555 55899999999999999998765 56788999999999999999999999999888755 4444444443
Q ss_pred ----HCCCC----chHHHHHHHHHHHhcCCHHHHHHHHHhcC--------CCC---hhHHHHHHHHHHhcCCchhHHHHH
Q 040394 275 ----IGIEI----NSHLVTALLDMYVKCGNIRDARSVFDELC--------SID---LVSWTAMIVGYTQSGYPDKALKLF 335 (691)
Q Consensus 275 ----~g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~---~~~~~~li~~~~~~g~~~~a~~~~ 335 (691)
..++| |...+..-+..|.+..+.+-|..+-.-+. .++ ..-|..+....|+....+.-..+|
T Consensus 342 ~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y 421 (625)
T KOG4422|consen 342 SLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWY 421 (625)
T ss_pred hhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22322 34556777888888888888887765541 122 234666777888888999999999
Q ss_pred HHhhHCCCCCcHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCC-chhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchh
Q 040394 336 TDKKWADFFPNHVTIASVLSASAQLGNLNMGRMVHSLGIRLGLE-DYTVINALVDMYAKCHVIADARYIFETTSEKDVIA 414 (691)
Q Consensus 336 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 414 (691)
+.|.-.-+-|+..+...++++....|.++-...++..++..|.. ......-++..+++.
T Consensus 422 ~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~-------------------- 481 (625)
T KOG4422|consen 422 EDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARD-------------------- 481 (625)
T ss_pred HHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcC--------------------
Confidence 99999889999999999999999999999999999888877754 333322232222221
Q ss_pred HHHHHHhhhCCCCCCHH---HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 040394 415 WNSIISGLDDNVSPDAV---TLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDA 491 (691)
Q Consensus 415 ~~~li~~~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 491 (691)
...|+.. -+.....-|. ..-.+..+..-.++.+. ...+...+.+.-.+.+.|+.++|.++|..
T Consensus 482 ----------k~hp~tp~r~Ql~~~~ak~a-ad~~e~~e~~~~R~r~~---~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l 547 (625)
T KOG4422|consen 482 ----------KLHPLTPEREQLQVAFAKCA-ADIKEAYESQPIRQRAQ---DWPATSLNCIAILLLRAGRTQKAWEMLGL 547 (625)
T ss_pred ----------CCCCCChHHHHHHHHHHHHH-HHHHHHHHhhHHHHHhc---cCChhHHHHHHHHHHHcchHHHHHHHHHH
Confidence 1233322 2222222221 11222223333344444 34566677788889999999999999988
Q ss_pred ccc-----CCHhHHH---HHHHHHhcCCChHHHHHHHHHHHHCC
Q 040394 492 MRE-----KNTVTWS---AMIGGYGMQGDGGGSLALFSDMLNEE 527 (691)
Q Consensus 492 ~~~-----~~~~~~~---~li~~~~~~~~~~~A~~~~~~m~~~g 527 (691)
+.+ |.....| .++..-.+.+++..|...++-|...+
T Consensus 548 ~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 548 FLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 743 2333444 45666677788888888888886654
No 34
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.70 E-value=2.2e-12 Score=131.42 Aligned_cols=86 Identities=9% Similarity=0.027 Sum_probs=77.4
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCCCchHHHHHHH
Q 040394 209 KNVVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIGIEINSHLVTALL 288 (691)
Q Consensus 209 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 288 (691)
++..+|..++.+-.-+|+.+.|..++.+|++.|++.+.+-|-.++-+ .++...+..++.-|.+.|+.|+..|+...+
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 78889999999999999999999999999999999998888888776 888899999999999999999999999888
Q ss_pred HHHHhcCCH
Q 040394 289 DMYVKCGNI 297 (691)
Q Consensus 289 ~~~~~~g~~ 297 (691)
..+.++|..
T Consensus 279 ip~l~N~~t 287 (1088)
T KOG4318|consen 279 IPQLSNGQT 287 (1088)
T ss_pred Hhhhcchhh
Confidence 888776653
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=2e-11 Score=115.93 Aligned_cols=479 Identities=11% Similarity=0.067 Sum_probs=301.2
Q ss_pred cCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhccCC--CCh-hhHHHHHHHHHhCCChhHHHHHHH
Q 040394 159 LRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDETLD--KNV-VSWTSMIAGYVQNDCAQEGLVLFN 235 (691)
Q Consensus 159 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~ 235 (691)
.+++..|.++|+..+..+..+...|-..+.+=.++..+..|..+|+..+. |-+ ..|-..+-.--..|++..|.++|+
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqife 165 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFE 165 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 44455555555555555544555555555555555555555555555322 111 122223333334456666666666
Q ss_pred HHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC------
Q 040394 236 RMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNIRDARSVFDELCS------ 309 (691)
Q Consensus 236 ~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------ 309 (691)
+..+ ..|+...+.+.|+.=.+.+.++.|..+++..+-. .|++..|-.....=.++|....|..+|+...+
T Consensus 166 rW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~ 241 (677)
T KOG1915|consen 166 RWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE 241 (677)
T ss_pred HHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence 5544 4566666666666666666666666666655432 46666666666666666666666666655422
Q ss_pred CChhHHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCc--HHHHHHHHHHHhcCCChhhHH--------HHHHHHHHhCCC
Q 040394 310 IDLVSWTAMIVGYTQSGYPDKALKLFTDKKWADFFPN--HVTIASVLSASAQLGNLNMGR--------MVHSLGIRLGLE 379 (691)
Q Consensus 310 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~--------~~~~~~~~~~~~ 379 (691)
-+...+.+...--.+...++.|.-+|+-.++. ++.+ ...|..+...=-+-|+....+ .-++..++.++-
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 11123333333334455666666666665554 1111 233444444434445433222 235667777777
Q ss_pred chhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHH-------HHHHHHHHH---hccCcHHHH
Q 040394 380 DYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAV-------TLVSVISAC---ASLGAVQVG 449 (691)
Q Consensus 380 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~-------~~~~ll~~~---~~~~~~~~a 449 (691)
+..++-..++.-...|+.+...++|++.... ++|-.. .|.-+=-+| ....+++.+
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan---------------vpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN---------------VPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc---------------CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 8888888889989999999999999998764 666331 222221222 356799999
Q ss_pred HHHHHHHHHcCCCCCchhHHHHHHHHH----HhcCCHHHHHHHHHhccc--CCHhHHHHHHHHHhcCCChHHHHHHHHHH
Q 040394 450 SSLHAYSTKQGLLSSNVYVGTALLNFY----AKCGDAQSARMVFDAMRE--KNTVTWSAMIGGYGMQGDGGGSLALFSDM 523 (691)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m 523 (691)
.++++...+. +|....++.-+=-+| .++.++..|.+++..... |-..++...|..-.+.++++.+..++++.
T Consensus 386 r~vyq~~l~l--IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 386 RQVYQACLDL--IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHHhh--cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999883 377777776654444 477899999999988774 67778888899889999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHH
Q 040394 524 LNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENM-PIEPDVSL 602 (691)
Q Consensus 524 ~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 602 (691)
++-+ +-|..+|......-...|+.+.|..+|.-.+....+.-....|...|+.-...|.+++|..+++++ ...+-...
T Consensus 464 le~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kv 542 (677)
T KOG1915|consen 464 LEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKV 542 (677)
T ss_pred HhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchH
Confidence 9853 335577877777777889999999999987655444444567777888888999999999999998 44555557
Q ss_pred HHHHHHHHH-----hcC-----------CHHHHHHHHHHHHh----cCCCCc--hhHHHHHHHHHhCCCcHHHHHHHHHH
Q 040394 603 FGAFLHGCG-----LYS-----------RFDLGEVMIKKMLE----LHPDKA--CYYVLVSNLYASDGRWIRVNQVRELM 660 (691)
Q Consensus 603 ~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~----~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~ 660 (691)
|-++..--. +.+ ....|..+|+++.. ..|... .....+-+.-...|...+...+-.+|
T Consensus 543 WisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~m 622 (677)
T KOG1915|consen 543 WISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKM 622 (677)
T ss_pred HHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhc
Confidence 766654332 334 57788999998876 233211 22233334444556655555555554
No 36
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.66 E-value=8.4e-13 Score=134.47 Aligned_cols=134 Identities=16% Similarity=0.113 Sum_probs=97.7
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-----CCCCHHHHHHHHHH
Q 040394 535 FTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENMP-----IEPDVSLFGAFLHG 609 (691)
Q Consensus 535 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~l~~~ 609 (691)
-+.++..|+...+..+++..-+.. +..-+. ..|..||+.++.....+.|..+.++.. ...|..-+..+.+.
T Consensus 462 ~~ql~l~l~se~n~lK~l~~~eky-e~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dL 537 (1088)
T KOG4318|consen 462 ANQLHLTLNSEYNKLKILCDEEKY-EDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDL 537 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHH
Confidence 334555555555555555443333 222222 678899999999999999999999883 34466677888899
Q ss_pred HHhcCCHHHHHHHHHHHHh---cCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCCCccCCCeeE
Q 040394 610 CGLYSRFDLGEVMIKKMLE---LHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRGLSKSPGCSL 673 (691)
Q Consensus 610 ~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 673 (691)
+.+.+....+..+++++.+ ..|....+...+.+.....|+.+.-.+..+-+...|+.. +|-.|
T Consensus 538 L~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~ 603 (1088)
T KOG4318|consen 538 LQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLW 603 (1088)
T ss_pred HHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccce
Confidence 9999999999999999887 344445556666677788899999999999999999877 44433
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.61 E-value=1.1e-12 Score=123.61 Aligned_cols=458 Identities=12% Similarity=0.055 Sum_probs=281.8
Q ss_pred HHHHcccCChhHHHHHHHHHHHhC-CCC-hhHHHHHHHHhHhcCChHHHHHHHhccCC--C--C----hhhHHHHHHHHH
Q 040394 153 LKACCELRDIDEGMKVHCEIVKVG-GPD-SFVLTGLVDMYAKCRDIGSSRQVFDETLD--K--N----VVSWTSMIAGYV 222 (691)
Q Consensus 153 l~~~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~--~----~~~~~~li~~~~ 222 (691)
..-|.......+|...++-+++.. +|+ ...-..+.+.+.+...+.+|++.++...+ | + +...+.+.-.+.
T Consensus 208 aqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfi 287 (840)
T KOG2003|consen 208 AQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFI 287 (840)
T ss_pred HHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEE
Confidence 344555556677777777777655 443 23334455667777777777777754422 1 1 224445555667
Q ss_pred hCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHH
Q 040394 223 QNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNIRDARS 302 (691)
Q Consensus 223 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 302 (691)
+.|++++|+..|+...+. .|+-.+-..++-++...|+-++..+.|..|+..-..||..-|- +..
T Consensus 288 q~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi-------~~~------- 351 (840)
T KOG2003|consen 288 QAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYI-------KEK------- 351 (840)
T ss_pred ecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccccc-------CCc-------
Confidence 778888888877776653 3665554455555555677777777777776544334332210 000
Q ss_pred HHHhcCCCChhHHHHHH-----HHHHhcC--CchhHHHHHHHhhHCCCCCcHHH-HHHHHHHHhcCCChhhHHHHHHHHH
Q 040394 303 VFDELCSIDLVSWTAMI-----VGYTQSG--YPDKALKLFTDKKWADFFPNHVT-IASVLSASAQLGNLNMGRMVHSLGI 374 (691)
Q Consensus 303 ~~~~~~~~~~~~~~~li-----~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~ 374 (691)
..|+....+.-| +..-+.+ +.++++-.--+++.--+.||-.. +..-+..+-.....+.|..
T Consensus 352 -----ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~d------ 420 (840)
T KOG2003|consen 352 -----DDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAID------ 420 (840)
T ss_pred -----CCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhh------
Confidence 112222211111 1111111 11222222222222222333211 1111111111111111111
Q ss_pred HhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 040394 375 RLGLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLHA 454 (691)
Q Consensus 375 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 454 (691)
.--.-...|.+.|+++.|.++++-..++|..+- .-..+-.+.+.-+....++..|.++-+
T Consensus 421 --------lei~ka~~~lk~~d~~~aieilkv~~~kdnk~~------------saaa~nl~~l~flqggk~~~~aqqyad 480 (840)
T KOG2003|consen 421 --------LEINKAGELLKNGDIEGAIEILKVFEKKDNKTA------------SAAANNLCALRFLQGGKDFADAQQYAD 480 (840)
T ss_pred --------hhhhHHHHHHhccCHHHHHHHHHHHHhccchhh------------HHHhhhhHHHHHHhcccchhHHHHHHH
Confidence 111223457789999999999988876642111 111111222333333446777777777
Q ss_pred HHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHhHHHHH---HHHHhcCCChHHHHHHHHHHHHCCCCCC
Q 040394 455 YSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMREKNTVTWSAM---IGGYGMQGDGGGSLALFSDMLNEEVQPN 531 (691)
Q Consensus 455 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~~~~~~A~~~~~~m~~~g~~p~ 531 (691)
.....+ .-++.....-.+.-...|+++.|...+.+....|...-.+| .-.+-..|+.++|++.|-++..- +..+
T Consensus 481 ~aln~d--ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn 557 (840)
T KOG2003|consen 481 IALNID--RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNN 557 (840)
T ss_pred HHhccc--ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhh
Confidence 666554 34444444444445567999999999999998776544443 33567789999999999888763 3445
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHh-CC-CCCCHHHHHHHHH
Q 040394 532 EVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEFMEN-MP-IEPDVSLFGAFLH 608 (691)
Q Consensus 532 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~-~~-~~p~~~~~~~l~~ 608 (691)
......+...|....+...|++++-+. ..+.|+ +.+..-|.+.|-+.|+-..|.+..-. .. ++.+..+...|..
T Consensus 558 ~evl~qianiye~led~aqaie~~~q~---~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~a 634 (840)
T KOG2003|consen 558 AEVLVQIANIYELLEDPAQAIELLMQA---NSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAA 634 (840)
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHh---cccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHH
Confidence 667777778888889999999998755 245555 88999999999999999999887544 44 5557778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhC
Q 040394 609 GCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQR 663 (691)
Q Consensus 609 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 663 (691)
.|....=+++++.+|+++--+.|+....-..++.++.+.|+|.+|.++++.+.+.
T Consensus 635 yyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 635 YYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 8988888999999999999999997777778888999999999999999988764
No 38
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=1.6e-12 Score=117.49 Aligned_cols=303 Identities=12% Similarity=0.093 Sum_probs=222.2
Q ss_pred hhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhcc
Q 040394 364 NMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASL 443 (691)
Q Consensus 364 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~ 443 (691)
++|...|-++.+..+.+..+.-+|.+.|.+.|..|.|+.+-..+.++...++ .--....-.|..-|...
T Consensus 52 dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~-----------~qr~lAl~qL~~Dym~a 120 (389)
T COG2956 52 DKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTF-----------EQRLLALQQLGRDYMAA 120 (389)
T ss_pred chHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCch-----------HHHHHHHHHHHHHHHHh
Confidence 3333333333333333444456677777777777777777776654411000 00112445566778888
Q ss_pred CcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCH--------hHHHHHHHHHhcCCChHH
Q 040394 444 GAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMREKNT--------VTWSAMIGGYGMQGDGGG 515 (691)
Q Consensus 444 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~li~~~~~~~~~~~ 515 (691)
|-+|.|+.+|..+.+.+ .--......|+..|-...+|++|..+-+++.+-+. ..|..|...+....+.+.
T Consensus 121 Gl~DRAE~~f~~L~de~--efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~ 198 (389)
T COG2956 121 GLLDRAEDIFNQLVDEG--EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDR 198 (389)
T ss_pred hhhhHHHHHHHHHhcch--hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHH
Confidence 89999999999888866 45666778889999999999999999887764322 256667777778899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHH-HhcccCCHHHHHHHHHHchhhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHH
Q 040394 516 SLALFSDMLNEEVQPNEVIFTTILS-ACSHTGMVGEGWKCFYSMCRDFKFVPS--MKHYVCMVDLLARAGRLEEALEFME 592 (691)
Q Consensus 516 A~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~ 592 (691)
|..++.+..+. .|+.+--++++. .....|+++.|.+.++.+.+. .|+ ..+...|..+|...|+.++...++.
T Consensus 199 A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ---n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~ 273 (389)
T COG2956 199 ARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ---NPEYLSEVLEMLYECYAQLGKPAEGLNFLR 273 (389)
T ss_pred HHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999885 566655555554 778899999999999988543 454 6788889999999999999999998
Q ss_pred hC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH---hCCCcHHHHHHHHHHHhCCCccC
Q 040394 593 NM-PIEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYA---SDGRWIRVNQVRELMKQRGLSKS 668 (691)
Q Consensus 593 ~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~g~~~~ 668 (691)
++ ...++...-..+...-....-.+.|...+.+-+...|+ ...+..+..... +.|.+.+..-.++.|...-++..
T Consensus 274 ~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt-~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~ 352 (389)
T COG2956 274 RAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPT-MRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRK 352 (389)
T ss_pred HHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc-HHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhc
Confidence 87 55566666666666656666678889999998999999 444444444332 44668888999999999999999
Q ss_pred CCeeEEEeCCeeeEEee
Q 040394 669 PGCSLVDLDIANDFSFS 685 (691)
Q Consensus 669 ~~~~~~~~~~~~~~~~~ 685 (691)
|.+..-+++..+|+|+-
T Consensus 353 ~~YRC~~CGF~a~~l~W 369 (389)
T COG2956 353 PRYRCQNCGFTAHTLYW 369 (389)
T ss_pred CCceecccCCcceeeee
Confidence 99999999999999974
No 39
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=4e-10 Score=107.36 Aligned_cols=454 Identities=11% Similarity=0.108 Sum_probs=337.4
Q ss_pred HHHHHHHHhHhcCChHHHHHHHhccCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChh-hHHHHHHHHH
Q 040394 182 VLTGLVDMYAKCRDIGSSRQVFDETLD---KNVVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQI-TLGSLVTACA 257 (691)
Q Consensus 182 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~li~~~~ 257 (691)
.|-....-=...+++..|..+|+.... +++..|-.-+..-.++..+..|..++++.... -|-+. .+---+..=-
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE 152 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHH
Confidence 333333333456778889999998755 57778888888889999999999999998763 34332 2333333345
Q ss_pred ccCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhc--CCCChhHHHHHHHHHHhcCCchhHHHHH
Q 040394 258 KLRALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNIRDARSVFDEL--CSIDLVSWTAMIVGYTQSGYPDKALKLF 335 (691)
Q Consensus 258 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~ 335 (691)
..|++..|.++|+...+ ..|+...|++.|+.=.+-+.++.|..+++.. +.|++.+|--...--.++|+...+..+|
T Consensus 153 ~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 67999999999998865 5899999999999999999999999999986 7799999988888888999999999999
Q ss_pred HHhhHC-CC-CCcHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCC--chhHHHHHHHHhHhcCChHHHHHHH-------
Q 040394 336 TDKKWA-DF-FPNHVTIASVLSASAQLGNLNMGRMVHSLGIRLGLE--DYTVINALVDMYAKCHVIADARYIF------- 404 (691)
Q Consensus 336 ~~m~~~-g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~------- 404 (691)
....+. |- .-+...|.+....=..+..++.|..++..+++.-+. ....|..+...--+-|+.....+..
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 887664 11 112334444444455677889999999999998887 5777777777777777765544332
Q ss_pred -HhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCch--hHHHHHHHH------
Q 040394 405 -ETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNV--YVGTALLNF------ 475 (691)
Q Consensus 405 -~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~------ 475 (691)
+.+.+. -+-|-.+|--.+..-...|+.+...++++..+..- ||-. ..+.-.|..
T Consensus 311 YE~~v~~---------------np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv--pp~~ekr~W~RYIYLWinYal 373 (677)
T KOG1915|consen 311 YEKEVSK---------------NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANV--PPASEKRYWRRYIYLWINYAL 373 (677)
T ss_pred HHHHHHh---------------CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC--CchhHHHHHHHHHHHHHHHHH
Confidence 222222 34566788888888888899999999999999876 3421 122222211
Q ss_pred --HHhcCCHHHHHHHHHhccc--C-CHhH----HHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC
Q 040394 476 --YAKCGDAQSARMVFDAMRE--K-NTVT----WSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTG 546 (691)
Q Consensus 476 --~~~~g~~~~A~~~~~~~~~--~-~~~~----~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 546 (691)
=....+.+.+.++|+...+ | ...| |-....-..++.+...|.+++...+ |.-|...+|...|..-.+.+
T Consensus 374 yeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~ 451 (677)
T KOG1915|consen 374 YEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLR 451 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHh
Confidence 1246788889999987764 2 2233 4444555567899999999999876 57899999999999999999
Q ss_pred CHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHH
Q 040394 547 MVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEFMENMPIEPDVS----LFGAFLHGCGLYSRFDLGEV 621 (691)
Q Consensus 547 ~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~ 621 (691)
.+|.+..++++.+ ...|. ..+|......-...|+.+.|..+|.-+-..|... .|.+.|.--...|.++.|..
T Consensus 452 efDRcRkLYEkfl---e~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~ 528 (677)
T KOG1915|consen 452 EFDRCRKLYEKFL---EFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARA 528 (677)
T ss_pred hHHHHHHHHHHHH---hcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHH
Confidence 9999999999874 45664 6778777777788899999999999985455433 45555555567899999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHH-----hCC-----------CcHHHHHHHHHHHh
Q 040394 622 MIKKMLELHPDKACYYVLVSNLYA-----SDG-----------RWIRVNQVRELMKQ 662 (691)
Q Consensus 622 ~~~~~~~~~p~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 662 (691)
+++++++..+. ..+|...+..-. ..| +...|..+|++...
T Consensus 529 LYerlL~rt~h-~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 529 LYERLLDRTQH-VKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HHHHHHHhccc-chHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 99999998888 447777776555 444 56678888877654
No 40
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=9.3e-12 Score=121.18 Aligned_cols=262 Identities=15% Similarity=0.055 Sum_probs=207.1
Q ss_pred chhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 040394 380 DYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQ 459 (691)
Q Consensus 380 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 459 (691)
+..+.....+-+...+++.+..++++.+.+.| +++...+..-|.++...|+..+-..+-..+++.
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d---------------pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~ 307 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD---------------PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL 307 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC---------------CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh
Confidence 66666777788888899999999999988875 445555555566777888877777777778777
Q ss_pred CCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHH-HH
Q 040394 460 GLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMREK---NTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEV-IF 535 (691)
Q Consensus 460 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~ 535 (691)
- |..+.+|-++.-.|...|+.++|.+.|.+...- =...|-.+...|+-.|..++|+..+...-+. -|... .+
T Consensus 308 y--P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~ 383 (611)
T KOG1173|consen 308 Y--PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPS 383 (611)
T ss_pred C--CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchH
Confidence 6 788888889988888899999999999876643 3468999999999999999999988887763 23221 22
Q ss_pred HHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-----CCC----CHHHHHH
Q 040394 536 TTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEFMENMP-----IEP----DVSLFGA 605 (691)
Q Consensus 536 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~p----~~~~~~~ 605 (691)
-.+---|.+.++.+.|.++|.+. .++.|+ +...+-+.-+....+.+.+|..+|+..- ..+ =..+++.
T Consensus 384 LYlgmey~~t~n~kLAe~Ff~~A---~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~N 460 (611)
T KOG1173|consen 384 LYLGMEYMRTNNLKLAEKFFKQA---LAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNN 460 (611)
T ss_pred HHHHHHHHHhccHHHHHHHHHHH---HhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHh
Confidence 22333677889999999999844 477776 6677777777778889999999888771 111 2346788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhC
Q 040394 606 FLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQR 663 (691)
Q Consensus 606 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 663 (691)
|..+|.+.+.+++|+..+++++.+.|.++.++..++.+|.-.|+++.|++.|.+.+..
T Consensus 461 LGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 461 LGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 8899999999999999999999999999999999999999999999999999887653
No 41
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.57 E-value=9.4e-15 Score=141.79 Aligned_cols=257 Identities=15% Similarity=0.148 Sum_probs=113.4
Q ss_pred HHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHH-HHHHHHhccCcHHHHHHHHHHHHHcCCCCC
Q 040394 386 ALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLV-SVISACASLGAVQVGSSLHAYSTKQGLLSS 464 (691)
Q Consensus 386 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 464 (691)
.+...+.+.|++++|.+++++.... ..+|+...|- .+...+...++.+.|...++.+...+ +.
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~--------------~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--~~ 76 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQK--------------IAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD--KA 76 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccc--------------ccccccccccccccccccccccccccccccccccccc--cc
Confidence 4577888899999999999654433 1135554444 44556667899999999999999887 56
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccc--CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHH
Q 040394 465 NVYVGTALLNFYAKCGDAQSARMVFDAMRE--KNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEE-VQPNEVIFTTILSA 541 (691)
Q Consensus 465 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~ 541 (691)
++..+..++.. ...+++++|..++...-+ ++...+..++..+...++++++.++++++.... .+++...|..+...
T Consensus 77 ~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~ 155 (280)
T PF13429_consen 77 NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEI 155 (280)
T ss_dssp ------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHH
T ss_pred ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 77778888887 789999999999887643 466778888899999999999999999987643 34566677778888
Q ss_pred hcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHH
Q 040394 542 CSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEFMENM--PIEPDVSLFGAFLHGCGLYSRFDL 618 (691)
Q Consensus 542 ~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~ 618 (691)
+.+.|+.++|.+.+++.++ ..|+ ......++..+...|+.+++.++++.. ..+.|...|..+..++...|+.++
T Consensus 156 ~~~~G~~~~A~~~~~~al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~ 232 (280)
T PF13429_consen 156 YEQLGDPDKALRDYRKALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEE 232 (280)
T ss_dssp HHHCCHHHHHHHHHHHHHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHH
T ss_pred HHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccc
Confidence 9999999999999997754 4676 778888999999999999988888777 234566678899999999999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHh
Q 040394 619 GEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQ 662 (691)
Q Consensus 619 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 662 (691)
|...++++.+.+|+|+.....++.++...|+.++|.+++++..+
T Consensus 233 Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 233 ALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999887754
No 42
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=1.4e-11 Score=117.52 Aligned_cols=213 Identities=14% Similarity=0.135 Sum_probs=151.5
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHhHHHHHHHHHhcCCChHHHHH
Q 040394 442 SLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE---KNTVTWSAMIGGYGMQGDGGGSLA 518 (691)
Q Consensus 442 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~ 518 (691)
-.|+.-.+..-|+..++.. +.+...|--+..+|....+.++..+.|++..+ .|..+|..-...+.-.+++++|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~--~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLD--PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcC--cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 3567777777777777776 34444466666777888888888888877664 255667666666666777888888
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 040394 519 LFSDMLNEEVQPNE-VIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENM-PI 596 (691)
Q Consensus 519 ~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 596 (691)
=|++.++ +.|+. ..|.-+--+..+.+.++++...|++..++ ++.-+..|+.....+...+++++|.+.|+.. ..
T Consensus 416 DF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 416 DFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 8888776 34543 34444444555777888888888887554 3334677888888888888888888888876 44
Q ss_pred CCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHH
Q 040394 597 EPD---------VSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMK 661 (691)
Q Consensus 597 ~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 661 (691)
.|+ +.+...++.. .-.+|+..|.++++++.+++|.....+..|+.+..++|+.++|+++|++-.
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 443 2222222222 234899999999999999999988899999999999999999999988754
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.55 E-value=9.6e-12 Score=126.34 Aligned_cols=216 Identities=7% Similarity=-0.008 Sum_probs=127.6
Q ss_pred HHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CH--------hHHHHHHHH
Q 040394 438 SACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMREK---NT--------VTWSAMIGG 506 (691)
Q Consensus 438 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--------~~~~~li~~ 506 (691)
..+...|+.+.|...++.+.+.. |.++.....+...|.+.|++++|.+++..+.+. +. ..|..++..
T Consensus 161 ~l~l~~g~~~~Al~~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~ 238 (398)
T PRK10747 161 RIQLARNENHAARHGVDKLLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQ 238 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555 455555556666666666666666665555532 11 122233333
Q ss_pred HhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHH
Q 040394 507 YGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEE 586 (691)
Q Consensus 507 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 586 (691)
.....+.+...++++.+-+. .+.+......+..++...|+.++|.+.+++..+ ..|+.... ++.+....++.++
T Consensus 239 ~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~ 312 (398)
T PRK10747 239 AMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQ 312 (398)
T ss_pred HHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHH
Confidence 33344445555555554332 234555666666677777777777777765532 23443221 2233344577777
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHh
Q 040394 587 ALEFMENM-PIEP-DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQ 662 (691)
Q Consensus 587 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 662 (691)
+++..++. ...| |...+..+...|.+.+++++|...|+++.+..|+ ...+..++.++.+.|+.++|.+.+++-+.
T Consensus 313 al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 313 LEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-AYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77777766 3334 3445667777777888888888888888888877 45556777788888888888777776644
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.54 E-value=1.1e-11 Score=125.97 Aligned_cols=284 Identities=12% Similarity=0.039 Sum_probs=200.5
Q ss_pred cCCHHHHHHHHHhcCCC--Chh-HHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCcHHHHH--HHHHHHhcCCChhhHHH
Q 040394 294 CGNIRDARSVFDELCSI--DLV-SWTAMIVGYTQSGYPDKALKLFTDKKWADFFPNHVTIA--SVLSASAQLGNLNMGRM 368 (691)
Q Consensus 294 ~g~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~ 368 (691)
.|+++.|.+.+...... +.. .|-....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 58888888888776432 222 3333334457889999999999998764 55654333 33457888899999999
Q ss_pred HHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHH
Q 040394 369 VHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQV 448 (691)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 448 (691)
.++...+..|.++.+...+...|.+.|++++|..++..+.+.. .. +......+-
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~--------------~~-~~~~~~~l~----------- 228 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH--------------VG-DEEHRAMLE----------- 228 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC--------------CC-CHHHHHHHH-----------
Confidence 9999999998899999999999999999999999999988762 11 111111000
Q ss_pred HHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHhHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 040394 449 GSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE---KNTVTWSAMIGGYGMQGDGGGSLALFSDMLN 525 (691)
Q Consensus 449 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 525 (691)
...|..++.......+.+...++++.+.+ .++.....+...+...|+.++|.+++++..+
T Consensus 229 -----------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~ 291 (398)
T PRK10747 229 -----------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK 291 (398)
T ss_pred -----------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 01111222222223344555555555543 3666777778888888888888888888877
Q ss_pred CCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHH
Q 040394 526 EEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEFMENM-PIEPDVSLF 603 (691)
Q Consensus 526 ~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~ 603 (691)
. .|+.... ++.+....++.+++.+..+...+. .|+ ...+..+...+.+.|++++|.+.|++. ...|+...+
T Consensus 292 ~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~ 364 (398)
T PRK10747 292 R--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDY 364 (398)
T ss_pred c--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHH
Confidence 3 5555322 233444568888888888877543 454 556778888888999999999998888 777888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040394 604 GAFLHGCGLYSRFDLGEVMIKKMLEL 629 (691)
Q Consensus 604 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (691)
..+...+.+.|+.++|.+++++.+.+
T Consensus 365 ~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 365 AWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88888899999999999999988774
No 45
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=4.5e-11 Score=114.24 Aligned_cols=337 Identities=11% Similarity=-0.014 Sum_probs=199.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-cchHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHh
Q 040394 114 FQVMIRWYFLNDLYKDIVEFYKCMRKRLKEHD-NFVFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAK 192 (691)
Q Consensus 114 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (691)
+-...+-|.++|.+++|++.|.+.++. .|+ +.-|.....+|...|+++++.+--...++..|.-+.++..-..++-.
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Confidence 344556778899999999999999986 677 67788888899999999999999998888887788888888899999
Q ss_pred cCChHHHHHHHhccCCCChhhHHHHHHHHHhCCChhHHHHHHHH---------HHhCC--CCCChhhHHHHHHHHHcc--
Q 040394 193 CRDIGSSRQVFDETLDKNVVSWTSMIAGYVQNDCAQEGLVLFNR---------MREGF--VEGNQITLGSLVTACAKL-- 259 (691)
Q Consensus 193 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---------m~~~~--~~p~~~t~~~li~~~~~~-- 259 (691)
.|++++|+.=+ |-.++..++..+.-..-+.+++++ |.+++ +-|......+....+...
T Consensus 196 lg~~~eal~D~---------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~ 266 (606)
T KOG0547|consen 196 LGKFDEALFDV---------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK 266 (606)
T ss_pred hccHHHHHHhh---------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc
Confidence 99999885322 222222222222211222222221 22122 335554444444433211
Q ss_pred ----CChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHh-cCCHHHHHHHHHhc--------CCC--Ch------hHHHHH
Q 040394 260 ----RALHQGKWLHGYILKIGIEINSHLVTALLDMYVK-CGNIRDARSVFDEL--------CSI--DL------VSWTAM 318 (691)
Q Consensus 260 ----~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~--------~~~--~~------~~~~~l 318 (691)
...+++-..+....+ ..+.. ...+..|...+.+- ... |. .+...-
T Consensus 267 ~~~~~~~~ksDa~l~~~l~--------------~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~ 332 (606)
T KOG0547|consen 267 PLFDNKSDKSDAALAEALE--------------ALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLR 332 (606)
T ss_pred ccccCCCccchhhHHHHHH--------------HHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHh
Confidence 011111111111100 00000 01223333332221 111 11 111111
Q ss_pred HHHHHhcCCchhHHHHHHHhhHCCCCCcHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChH
Q 040394 319 IVGYTQSGYPDKALKLFTDKKWADFFPNHVTIASVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIA 398 (691)
Q Consensus 319 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 398 (691)
..-+.-.|+...|..-|+..+.....++.- |..+...|....+.++..+.|..+.+.++.++.+|..-..++.-.++++
T Consensus 333 gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 333 GTFHFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhhhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHH
Confidence 122344678888888888887764333332 6667777888888888888888888888888888877777777778888
Q ss_pred HHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHh
Q 040394 399 DARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAK 478 (691)
Q Consensus 399 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 478 (691)
+|..=|++..+-+ +-+...|..+--+.-+.+++++++..|++.++.- |..+..|+.....+..
T Consensus 412 ~A~aDF~Kai~L~---------------pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--P~~~Evy~~fAeiLtD 474 (606)
T KOG0547|consen 412 EAIADFQKAISLD---------------PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF--PNCPEVYNLFAEILTD 474 (606)
T ss_pred HHHHHHHHHhhcC---------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCchHHHHHHHHHhh
Confidence 8888887776432 1223344444444445666666666666666554 5666666666666666
Q ss_pred cCCHHHHHHHHHhcc
Q 040394 479 CGDAQSARMVFDAMR 493 (691)
Q Consensus 479 ~g~~~~A~~~~~~~~ 493 (691)
.++++.|.+.|+...
T Consensus 475 qqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 475 QQQFDKAVKQYDKAI 489 (606)
T ss_pred HHhHHHHHHHHHHHH
Confidence 666666666665544
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.51 E-value=3.1e-11 Score=123.41 Aligned_cols=283 Identities=14% Similarity=0.001 Sum_probs=147.1
Q ss_pred HhcCCchhHHHHHHHhhHCCCCCcHHH-HHHHHHHHhcCCChhhHHHHHHHHHHhCCCc-hhHHHHHHHHhHhcCChHHH
Q 040394 323 TQSGYPDKALKLFTDKKWADFFPNHVT-IASVLSASAQLGNLNMGRMVHSLGIRLGLED-YTVINALVDMYAKCHVIADA 400 (691)
Q Consensus 323 ~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a 400 (691)
...|+++.|.+.+.+..+. .|+... +.....+....|+.+.+...+....+..+.+ ..+.......+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4578888888888776554 454433 3333446667777777777777776655442 33444456666777777777
Q ss_pred HHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHH-HHHHH---
Q 040394 401 RYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTA-LLNFY--- 476 (691)
Q Consensus 401 ~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~--- 476 (691)
...++.+.+. -+-+...+..+...+...|+++.+.+.+..+.+.+. .+...+.. -...+
T Consensus 173 l~~l~~l~~~---------------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~--~~~~~~~~l~~~a~~~~ 235 (409)
T TIGR00540 173 RHGVDKLLEM---------------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL--FDDEEFADLEQKAEIGL 235 (409)
T ss_pred HHHHHHHHHh---------------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHH
Confidence 7777776654 122444566666666777777777777777776653 22222211 11111
Q ss_pred H----hcCCHHHHHHHHHhccc---CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHH
Q 040394 477 A----KCGDAQSARMVFDAMRE---KNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVG 549 (691)
Q Consensus 477 ~----~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 549 (691)
. .....+...+.++...+ .+...+..+...+...|+.++|.+.+++..+. .||.....
T Consensus 236 l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~------------- 300 (409)
T TIGR00540 236 LDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAIS------------- 300 (409)
T ss_pred HHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccch-------------
Confidence 1 11122233333333332 24455555555555555555555555555553 23322100
Q ss_pred HHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH---HHHHHHHHHHHhcCCHHHHHHHHH-
Q 040394 550 EGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENM-PIEPDV---SLFGAFLHGCGLYSRFDLGEVMIK- 624 (691)
Q Consensus 550 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~- 624 (691)
......-.....++.+.+.+.+++. ...|+. ....++.+.+.+.|++++|.+.|+
T Consensus 301 --------------------~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~ 360 (409)
T TIGR00540 301 --------------------LPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKN 360 (409)
T ss_pred --------------------hHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 0000111112223444444444443 222222 344556666666666666666666
Q ss_pred -HHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHH
Q 040394 625 -KMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELM 660 (691)
Q Consensus 625 -~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 660 (691)
.+.+..|+ +..+..++.++.+.|+.++|.+++++.
T Consensus 361 a~a~~~~p~-~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 361 VAACKEQLD-ANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred hHHhhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34445565 333446666666666666666666554
No 47
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.50 E-value=3.1e-08 Score=98.36 Aligned_cols=544 Identities=11% Similarity=0.112 Sum_probs=341.1
Q ss_pred hhhHHHHHHhcCCChHHHHHHhccCCC-----CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 040394 82 CNTKLVSMYGSFGHVKYARSVFDSMPN-----PDFYSFQVMIRWYFLNDLYKDIVEFYKCMRKRLKEHDNFVFSKVLKAC 156 (691)
Q Consensus 82 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 156 (691)
.|-...+.+.++|++..-+..|++... .....|...+.-....+-++-++.+|++.++- ++..-+.-|..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHH
Confidence 566667778888998888888886532 45567888888888888888999999988764 333466667788
Q ss_pred cccCChhHHHHHHHHHHHh-------CCCChhHHHHHHHHhHhcCCh---HHHHHHHhccCCC--C--hhhHHHHHHHHH
Q 040394 157 CELRDIDEGMKVHCEIVKV-------GGPDSFVLTGLVDMYAKCRDI---GSSRQVFDETLDK--N--VVSWTSMIAGYV 222 (691)
Q Consensus 157 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~--~--~~~~~~li~~~~ 222 (691)
+..+++++|.+.+...+.. |+.+-..|..+.+...+.-+. -....+++.+..+ | ...|++|.+.|.
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYI 259 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHH
Confidence 8889999998888877642 333667777777777665432 2334455555442 2 357999999999
Q ss_pred hCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHH-HHCCCCchHHHHHHHHHHHhcCCHHHHH
Q 040394 223 QNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYIL-KIGIEINSHLVTALLDMYVKCGNIRDAR 301 (691)
Q Consensus 223 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~li~~~~~~g~~~~A~ 301 (691)
+.|.+++|.++|++....- .+..-|..+.++|+......-+... +... +.|-+-+.. +++-..
T Consensus 260 r~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~m-e~a~~~~~n~ed~~-------------dl~~~~ 323 (835)
T KOG2047|consen 260 RSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKM-ELADEESGNEEDDV-------------DLELHM 323 (835)
T ss_pred HhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHH-hhhhhcccChhhhh-------------hHHHHH
Confidence 9999999999999876532 2444566666666543222111111 0000 111111111 122222
Q ss_pred HHHHhc---------------CCCChhHHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCc------HHHHHHHHHHHhcC
Q 040394 302 SVFDEL---------------CSIDLVSWTAMIVGYTQSGYPDKALKLFTDKKWADFFPN------HVTIASVLSASAQL 360 (691)
Q Consensus 302 ~~~~~~---------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~------~~t~~~ll~~~~~~ 360 (691)
.-|+.+ ...++..|..-+. +..|+..+-...+.+.... +.|. ...|..+...|-..
T Consensus 324 a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~ 400 (835)
T KOG2047|consen 324 ARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENN 400 (835)
T ss_pred HHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhc
Confidence 223222 1234445544443 3456777777888877665 3332 24577788889999
Q ss_pred CChhhHHHHHHHHHHhCCCc----hhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHH-----
Q 040394 361 GNLNMGRMVHSLGIRLGLED----YTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAV----- 431 (691)
Q Consensus 361 ~~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~----- 431 (691)
|+++.|+.+|+...+...+. ..+|.....+-.+..+++.|+++.++...-. -+..+..|..+.++...
T Consensus 401 ~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP---~~~~~~~yd~~~pvQ~rlhrSl 477 (835)
T KOG2047|consen 401 GDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVP---TNPELEYYDNSEPVQARLHRSL 477 (835)
T ss_pred CcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCC---CchhhhhhcCCCcHHHHHHHhH
Confidence 99999999999998877662 4566666677777888999999888754321 11112333333333333
Q ss_pred -HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc----CCHh-HHHHHHH
Q 040394 432 -TLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE----KNTV-TWSAMIG 505 (691)
Q Consensus 432 -~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~li~ 505 (691)
.|...+..--..|-++....+++.+.+..+ .++.+.-.....+....-++++.+++++-.. |++. .|+..+.
T Consensus 478 kiWs~y~DleEs~gtfestk~vYdriidLri--aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLt 555 (835)
T KOG2047|consen 478 KIWSMYADLEESLGTFESTKAVYDRIIDLRI--ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLT 555 (835)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHH
Confidence 344445555567888999999999999886 4455444455556667778999999998664 4443 6777665
Q ss_pred HHhc---CCChHHHHHHHHHHHHCCCCCCHHHHHHHHH--HhcccCCHHHHHHHHHHchhhcCCCCC--hhHHHHHHHHH
Q 040394 506 GYGM---QGDGGGSLALFSDMLNEEVQPNEVIFTTILS--ACSHTGMVGEGWKCFYSMCRDFKFVPS--MKHYVCMVDLL 578 (691)
Q Consensus 506 ~~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~li~~~ 578 (691)
-+.+ ....+.|..+|++..+ |.+|...-+-.++- .-.+.|....|..++++... ++.+. ..+|+..|.--
T Consensus 556 kfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~ka 632 (835)
T KOG2047|consen 556 KFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKA 632 (835)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHH
Confidence 5543 3578999999999999 67776543322222 22346888899999998632 45554 56777777543
Q ss_pred HhcCChHHHHHHHHhC-CCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhc-CCC-CchhHHHHHHHHHhCCCcHH
Q 040394 579 ARAGRLEEALEFMENM-PIEPDVSLF---GAFLHGCGLYSRFDLGEVMIKKMLEL-HPD-KACYYVLVSNLYASDGRWIR 652 (691)
Q Consensus 579 ~~~g~~~~A~~~~~~~-~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~-~~~~~~~l~~~~~~~g~~~~ 652 (691)
...=-+....+++++. ..-||...- ......-.+.|..+.|..++...-++ +|. +..+|...-..-.+-|+-+.
T Consensus 633 ae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT 712 (835)
T KOG2047|consen 633 AEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDT 712 (835)
T ss_pred HHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHH
Confidence 3222222233344443 233444332 22233345678888898888887774 444 24567777677777888444
Q ss_pred HHHH
Q 040394 653 VNQV 656 (691)
Q Consensus 653 A~~~ 656 (691)
..+.
T Consensus 713 ~keM 716 (835)
T KOG2047|consen 713 YKEM 716 (835)
T ss_pred HHHH
Confidence 4333
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=6.7e-10 Score=105.73 Aligned_cols=285 Identities=11% Similarity=0.103 Sum_probs=187.8
Q ss_pred HHhcCCChhhHHHHHHHHHHhCCC-chhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHH
Q 040394 356 ASAQLGNLNMGRMVHSLGIRLGLE-DYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLV 434 (691)
Q Consensus 356 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~ 434 (691)
++......+++.+-.......|.+ +...-+....+.-...++++|..+|+++.+.|+- ---|..+|+
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPY------------Rl~dmdlyS 303 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPY------------RLDDMDLYS 303 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC------------cchhHHHHh
Confidence 444445566666666666666666 5544555555566667777777777777765531 112445666
Q ss_pred HHHHHHhccCcHH-HHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CHhHHHHHHHHHhcC
Q 040394 435 SVISACASLGAVQ-VGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMREK---NTVTWSAMIGGYGMQ 510 (691)
Q Consensus 435 ~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~ 510 (691)
.++-.-....++. .|..++ ..+ .-.+.+...+.+.|.-.++.+.|...|++..+- ....|+.+.+-|...
T Consensus 304 N~LYv~~~~skLs~LA~~v~----~id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEm 377 (559)
T KOG1155|consen 304 NVLYVKNDKSKLSYLAQNVS----NID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEM 377 (559)
T ss_pred HHHHHHhhhHHHHHHHHHHH----Hhc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHh
Confidence 6554432222111 122211 111 344566666777777788888888888877653 345777788888888
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHH
Q 040394 511 GDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALE 589 (691)
Q Consensus 511 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~ 589 (691)
++...|++.+++..+-. +-|-..|..+-++|.-.+...=|+-+|++. ..++|+ ...|.+|...|.+.++.++|++
T Consensus 378 KNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA---~~~kPnDsRlw~aLG~CY~kl~~~~eAiK 453 (559)
T KOG1155|consen 378 KNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKA---LELKPNDSRLWVALGECYEKLNRLEEAIK 453 (559)
T ss_pred cccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHH---HhcCCCchHHHHHHHHHHHHhccHHHHHH
Confidence 88888888888887742 446677777888888888888888888754 356675 7788888888888888888888
Q ss_pred HHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------cCCCCchhHHHHHHHHHhCCCcHHHHHHHHHH
Q 040394 590 FMENM--PIEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLE-------LHPDKACYYVLVSNLYASDGRWIRVNQVRELM 660 (691)
Q Consensus 590 ~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 660 (691)
.|.+. ....+...+..|...+-+-++.++|...+++-++ ..|+.......|+.-+.+.+++++|..+....
T Consensus 454 Cykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 454 CYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 88877 2333557778888888888888888888887776 34444445555777777888888877665554
Q ss_pred Hh
Q 040394 661 KQ 662 (691)
Q Consensus 661 ~~ 662 (691)
..
T Consensus 534 ~~ 535 (559)
T KOG1155|consen 534 LK 535 (559)
T ss_pred hc
Confidence 43
No 49
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.1e-10 Score=113.79 Aligned_cols=494 Identities=11% Similarity=0.004 Sum_probs=306.7
Q ss_pred hhHHHHHhhc---cCchhHHHHHHHHHHhCCCCchhhhHHHHHHhcCCChHHHHHHhcc--CCCCCcchHHHHHHHHHhC
Q 040394 50 IPCLNLLGLC---KSTGSLKAFHALLIVDGLTNDKCNTKLVSMYGSFGHVKYARSVFDS--MPNPDFYSFQVMIRWYFLN 124 (691)
Q Consensus 50 ~~~~~ll~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~ll~~~~~~ 124 (691)
..+..+.+-+ .+...|..+-+.+...+..|.. .--++++|.-.|+++.|..+... +.+.|..+.......+.+.
T Consensus 17 ~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d-~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~l 95 (611)
T KOG1173|consen 17 EKYRRLVRDALMQHRYKTALFWADKVAGLTNDPAD-IYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKL 95 (611)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHH-HHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 3344444433 3455566666666555533333 33477888888999999888764 4467888888899999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHh
Q 040394 125 DLYKDIVEFYKCMRKRLKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFD 204 (691)
Q Consensus 125 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 204 (691)
.++++|..++..-. +.-++..|-..=. ...-..+.+.+....-. ....+-.-...|......++|..-|.
T Consensus 96 k~~~~al~vl~~~~---~~~~~f~yy~~~~--~~~l~~n~~~~~~~~~~-----essic~lRgk~y~al~n~~~ar~~Y~ 165 (611)
T KOG1173|consen 96 KEWDQALLVLGRGH---VETNPFSYYEKDA--ANTLELNSAGEDLMINL-----ESSICYLRGKVYVALDNREEARDKYK 165 (611)
T ss_pred HHHHHHHHHhcccc---hhhcchhhcchhh--hceeccCcccccccccc-----hhceeeeeeehhhhhccHHHHHHHHH
Confidence 99999998887321 0001111100000 00000011110000000 11111111223333445556655555
Q ss_pred ccCCCChhhHHHHHHHHHhC-CChhHHHHHHHHHHhC-CCCCChhhHHHHHHHH-HccCChhhHHHHHHHHHHHCCCCch
Q 040394 205 ETLDKNVVSWTSMIAGYVQN-DCAQEGLVLFNRMREG-FVEGNQITLGSLVTAC-AKLRALHQGKWLHGYILKIGIEINS 281 (691)
Q Consensus 205 ~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~-~~~p~~~t~~~li~~~-~~~~~~~~a~~~~~~~~~~g~~~~~ 281 (691)
+..--|+..+..+...-... -...+-.++++...-. -.+-+......+.... ++..+.+ ....-.+-.-.|..-+.
T Consensus 166 ~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~-~~~r~~~~sl~~l~~~~ 244 (611)
T KOG1173|consen 166 EALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEE-SLTRNEDESLIGLAENL 244 (611)
T ss_pred HHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcccc-ccccCchhhhhhhhhcH
Confidence 54444444443332221110 0011112222211000 0111222222222221 1111100 00000001112345566
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCcHHHHHHHHHHHh
Q 040394 282 HLVTALLDMYVKCGNIRDARSVFDELCS---IDLVSWTAMIVGYTQSGYPDKALKLFTDKKWADFFPNHVTIASVLSASA 358 (691)
Q Consensus 282 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 358 (691)
.+...-.+-+...+++.+..++++.+.+ .+...+..=|..+...|+..+-..+=..|.+. .+-...+|-.+..-|.
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHH
Confidence 7777777888899999999999998844 44556666677888999988888888888776 3445678888888888
Q ss_pred cCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHH
Q 040394 359 QLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVIS 438 (691)
Q Consensus 359 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~ 438 (691)
..|+.++|+.++.+....++.-...|-.+...|+-.|..++|+..+....+- ++-...-+.-+.-
T Consensus 324 ~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl---------------~~G~hlP~LYlgm 388 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL---------------MPGCHLPSLYLGM 388 (611)
T ss_pred HhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh---------------ccCCcchHHHHHH
Confidence 8899999999999999988887778889999999999999998877654321 1111112233444
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC----------CHhHHHHHHHHHh
Q 040394 439 ACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMREK----------NTVTWSAMIGGYG 508 (691)
Q Consensus 439 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~ 508 (691)
-|.+.++...|.++|....... |.++.+.+-+.-.....+.+.+|..+|+....+ -..+++.|..+|.
T Consensus 389 ey~~t~n~kLAe~Ff~~A~ai~--P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R 466 (611)
T KOG1173|consen 389 EYMRTNNLKLAEKFFKQALAIA--PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR 466 (611)
T ss_pred HHHHhccHHHHHHHHHHHHhcC--CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH
Confidence 5778899999999999998877 889999999988888899999999999876631 3446788889999
Q ss_pred cCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHH
Q 040394 509 MQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDL 577 (691)
Q Consensus 509 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~ 577 (691)
+.+.+++|+..+++.+.. .+-|..++.++.-.+...|+++.|.+.|. +...+.|+-.+-..++..
T Consensus 467 kl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fh---KaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 467 KLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFH---KALALKPDNIFISELLKL 531 (611)
T ss_pred HHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHH---HHHhcCCccHHHHHHHHH
Confidence 999999999999988875 35567788888888888999999999998 455788887666665553
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.49 E-value=1.1e-10 Score=119.51 Aligned_cols=285 Identities=12% Similarity=0.031 Sum_probs=184.4
Q ss_pred HhcCCHHHHHHHHHhcCC--CCh-hHHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCcHH--HHHHHHHHHhcCCChhhH
Q 040394 292 VKCGNIRDARSVFDELCS--IDL-VSWTAMIVGYTQSGYPDKALKLFTDKKWADFFPNHV--TIASVLSASAQLGNLNMG 366 (691)
Q Consensus 292 ~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a 366 (691)
...|+++.|.+.+.+..+ |+. ..+-....+..+.|+++.|.+.+.+..+. .|+.. .-......+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHH
Confidence 467999999999988733 333 33444456788899999999999998765 35543 333446788889999999
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHH-HHHHH---hc
Q 040394 367 RMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVS-VISAC---AS 442 (691)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~-ll~~~---~~ 442 (691)
...++.+.+..|.++.+...+...+...|++++|.+.+....+. ++ ++...+.. -..+. ..
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~--------------~~-~~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA--------------GL-FDDEEFADLEQKAEIGLLD 237 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc--------------CC-CCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998876 22 23333321 11111 22
Q ss_pred cCcHHHHHHHHHHHHHcCC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--CCHhH---HHHHHHHHhcCCChHH
Q 040394 443 LGAVQVGSSLHAYSTKQGL--LSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE--KNTVT---WSAMIGGYGMQGDGGG 515 (691)
Q Consensus 443 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~---~~~li~~~~~~~~~~~ 515 (691)
.+..+.+...+..+.+... .+.++..+..+...+...|+.++|.+++++..+ ||... ...........++.+.
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHH
Confidence 2333333345555554431 024888999999999999999999999999875 33221 0111111122333333
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh--
Q 040394 516 SLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMEN-- 593 (691)
Q Consensus 516 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-- 593 (691)
+.+.+++..+. .|+. |+.....++...+.+.|++++|.+.|++
T Consensus 318 ~~~~~e~~lk~--~p~~---------------------------------~~~~ll~sLg~l~~~~~~~~~A~~~le~a~ 362 (409)
T TIGR00540 318 LEKLIEKQAKN--VDDK---------------------------------PKCCINRALGQLLMKHGEFIEAADAFKNVA 362 (409)
T ss_pred HHHHHHHHHHh--CCCC---------------------------------hhHHHHHHHHHHHHHcccHHHHHHHHHHhH
Confidence 43333333331 2222 2113444556666666666666666662
Q ss_pred C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040394 594 M-PIEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLE 628 (691)
Q Consensus 594 ~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (691)
. ...|+...+..+...+.+.|+.++|.+++++.+.
T Consensus 363 a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 363 ACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 4556666666666666666666666666666544
No 51
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.48 E-value=1.3e-13 Score=133.76 Aligned_cols=256 Identities=13% Similarity=0.034 Sum_probs=83.5
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHH-HHHHHHccCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCC
Q 040394 218 IAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGS-LVTACAKLRALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGN 296 (691)
Q Consensus 218 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~-li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 296 (691)
...+.+.|++++|++++++......+|+...|-. +...+...++.+.|...++.+...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 4444555666666666544333221233333322 223334455566666666666554422 44445555555 56677
Q ss_pred HHHHHHHHHhc--CCCChhHHHHHHHHHHhcCCchhHHHHHHHhhHCC-CCCcHHHHHHHHHHHhcCCChhhHHHHHHHH
Q 040394 297 IRDARSVFDEL--CSIDLVSWTAMIVGYTQSGYPDKALKLFTDKKWAD-FFPNHVTIASVLSASAQLGNLNMGRMVHSLG 373 (691)
Q Consensus 297 ~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 373 (691)
+++|.++++.. ..++...+..++..+.+.++++++.++++...... ..++...|..+...+.+.|+.++|...++.+
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777776655 22445556666777777777777777777765432 2345556666666677777777777777777
Q ss_pred HHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 040394 374 IRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLH 453 (691)
Q Consensus 374 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 453 (691)
.+..|.+..+.+.++..+...|+.+++..+++..... .+.|...+..+..++...|+.+.|...+
T Consensus 173 l~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~---------------~~~~~~~~~~la~~~~~lg~~~~Al~~~ 237 (280)
T PF13429_consen 173 LELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA---------------APDDPDLWDALAAAYLQLGRYEEALEYL 237 (280)
T ss_dssp HHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH----------------HTSCCHCHHHHHHHHHHT-HHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH---------------CcCHHHHHHHHHHHhccccccccccccc
Confidence 7777776666677777777777776666655554332 1233344555555666666666666666
Q ss_pred HHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 040394 454 AYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAM 492 (691)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 492 (691)
+...+.. |.++.....+.+++...|+.++|..+..+.
T Consensus 238 ~~~~~~~--p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 238 EKALKLN--PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHS--TT-HHHHHHHHHHHT---------------
T ss_pred ccccccc--cccccccccccccccccccccccccccccc
Confidence 6666555 556666666666666666666666555443
No 52
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=1.5e-11 Score=122.31 Aligned_cols=279 Identities=11% Similarity=-0.010 Sum_probs=205.5
Q ss_pred hhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhc
Q 040394 363 LNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACAS 442 (691)
Q Consensus 363 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~ 442 (691)
..+|...|......-..+..+...+..+|...+++++|..+|+.+...+.. ..-+..+|.+.+.-+-+
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~------------rv~~meiyST~LWHLq~ 402 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPY------------RVKGMEIYSTTLWHLQD 402 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc------------cccchhHHHHHHHHHHh
Confidence 345555555544444445566677777777777777777777777654211 11234556665554432
Q ss_pred cCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CHhHHHHHHHHHhcCCChHHHHHH
Q 040394 443 LGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMREK---NTVTWSAMIGGYGMQGDGGGSLAL 519 (691)
Q Consensus 443 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~ 519 (691)
.- .--.+-+.+.+.. +..+.+|-++.+.|.-+++.+.|++.|++..+- ...+|+.+..-+.....+|.|...
T Consensus 403 ~v---~Ls~Laq~Li~~~--~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~ 477 (638)
T KOG1126|consen 403 EV---ALSYLAQDLIDTD--PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKS 477 (638)
T ss_pred hH---HHHHHHHHHHhhC--CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHH
Confidence 11 1112233444554 788889999999999999999999999988763 456888888888888899999999
Q ss_pred HHHHHHCCCCCCHHHHHH---HHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-
Q 040394 520 FSDMLNEEVQPNEVIFTT---ILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEFMENM- 594 (691)
Q Consensus 520 ~~~m~~~g~~p~~~~~~~---ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~- 594 (691)
|+..+ ..|...|++ +--.|.+.++++.|+-.|++. ..+.|. ......+...+-+.|+.++|+.+++++
T Consensus 478 fr~Al----~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA---~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 478 FRKAL----GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKA---VEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAI 550 (638)
T ss_pred HHhhh----cCCchhhHHHHhhhhheeccchhhHHHHHHHhh---hcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHH
Confidence 98875 445555554 444788999999999999955 367776 667777888899999999999999998
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCCC
Q 040394 595 PIEP-DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRGL 665 (691)
Q Consensus 595 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 665 (691)
...| |+..--.-+..+...+++++|...++++.++.|++...+..++.+|.+.|+.+.|...+-.+.+-..
T Consensus 551 ~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 551 HLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred hcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 3333 4444445566777889999999999999999999999999999999999999999999988887543
No 53
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.6e-09 Score=101.65 Aligned_cols=298 Identities=10% Similarity=-0.031 Sum_probs=216.7
Q ss_pred HHhcCCchhHHHHHHHhhHCC-CCCcHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHH
Q 040394 322 YTQSGYPDKALKLFTDKKWAD-FFPNHVTIASVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADA 400 (691)
Q Consensus 322 ~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 400 (691)
.+-.++...+...+--+.... ++-|......+...+...|+.++++..|+.....++.+..........+.+.|+.+..
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhH
Confidence 344455555554444333333 3444555666666777778888888888777777766444444455556667777766
Q ss_pred HHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcC
Q 040394 401 RYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCG 480 (691)
Q Consensus 401 ~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 480 (691)
..+...+...+ .-+..-|..-........+.+.|..+-++.++.+ +.+...+-.-...+...|
T Consensus 286 ~~L~~~Lf~~~---------------~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~~~ 348 (564)
T KOG1174|consen 286 SALMDYLFAKV---------------KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLIALE 348 (564)
T ss_pred HHHHHHHHhhh---------------hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHHhcc
Confidence 66555554321 1122223333344456778889999999888877 677777766678888999
Q ss_pred CHHHHHHHHHhccc--C-CHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHhc-ccCCHHHHHHHH
Q 040394 481 DAQSARMVFDAMRE--K-NTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTIL-SACS-HTGMVGEGWKCF 555 (691)
Q Consensus 481 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~~~~-~~g~~~~A~~~~ 555 (691)
+.++|.-.|+.... | +..+|..|+..|...|.+.+|..+-....+. ++-+..+.+.+- ..|. ....-++|.+++
T Consensus 349 R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ 427 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFA 427 (564)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHH
Confidence 99999999997664 3 7889999999999999999999887776654 455556665552 3332 334457889998
Q ss_pred HHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 040394 556 YSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEFMENM-PIEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDK 633 (691)
Q Consensus 556 ~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 633 (691)
+ +...+.|+ ....+.+...+...|+.++++.++++. ...||....+.|.+.+...+.+.+|...|..+++++|++
T Consensus 428 e---k~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 428 E---KSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred H---hhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 8 44578888 677788889999999999999999998 778999999999999999999999999999999999998
Q ss_pred chhHHHH
Q 040394 634 ACYYVLV 640 (691)
Q Consensus 634 ~~~~~~l 640 (691)
..+...+
T Consensus 505 ~~sl~Gl 511 (564)
T KOG1174|consen 505 KRTLRGL 511 (564)
T ss_pred hHHHHHH
Confidence 7666555
No 54
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=6.5e-08 Score=100.67 Aligned_cols=602 Identities=14% Similarity=0.119 Sum_probs=342.6
Q ss_pred hhhhhhcccCCCccccccccccCCCCCCCCCChHHHHhhhcCCCc--hhHHHHHhhc--cCchh--------------HH
Q 040394 5 SLLQRHVSRTKKPKLQLRFFSYTNQQTPTQHELDQTFASFHSLPS--IPCLNLLGLC--KSTGS--------------LK 66 (691)
Q Consensus 5 ~~~~~~~~~~~~p~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~ll~~~--~~~~~--------------a~ 66 (691)
.+++.+.. .+|+.+..|-.-..+..+...+++.-..+|.+.+. .....+|.+. .+++. |.
T Consensus 515 flLq~l~r--~sPD~~~qFa~~l~Q~~~~~~die~I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aP 592 (1666)
T KOG0985|consen 515 FLLQQLKR--SSPDQALQFAMMLVQDEEPLADIEQIVDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAP 592 (1666)
T ss_pred HHHHHHHc--cChhHHHHHHHHhhccCCCcccHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhccch
Confidence 34444443 68888888887777767777778877777776221 1122234444 11221 22
Q ss_pred HHHHHHHHhCCCCchhhhHHHHHHhcCCChHHHHHHhccCCC--CCcchHHHH-----HHHHHhCCChhHHHHHHHHHHH
Q 040394 67 AFHALLIVDGLTNDKCNTKLVSMYGSFGHVKYARSVFDSMPN--PDFYSFQVM-----IRWYFLNDLYKDIVEFYKCMRK 139 (691)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l-----l~~~~~~~~~~~a~~~~~~m~~ 139 (691)
++.+.++-+++...--+..+.+.|.++|-...|++.+..+.. +.++ ...+ +-.|...-.++++.+.++.|..
T Consensus 593 qVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vV-hth~L~pEwLv~yFg~lsve~s~eclkaml~ 671 (1666)
T KOG0985|consen 593 QVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVV-HTHLLNPEWLVNYFGSLSVEDSLECLKAMLS 671 (1666)
T ss_pred HHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHH-HhccCCHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 222222333322221356788999999999999999887753 1111 1111 2234455678999999999999
Q ss_pred cCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHh-----------CCC-ChhHHHHHHHHhHhcCChHHHHHHHhccC
Q 040394 140 RLKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKV-----------GGP-DSFVLTGLVDMYAKCRDIGSSRQVFDETL 207 (691)
Q Consensus 140 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----------~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 207 (691)
.+++.+..+...+..-|+..=-.+.-.++|+..... ... |+.+.--.|.+.|+.|++.+.+++.++-.
T Consensus 672 ~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn 751 (1666)
T KOG0985|consen 672 ANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESN 751 (1666)
T ss_pred HHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccc
Confidence 999989888888888887776677777888776542 123 88888899999999999999999987541
Q ss_pred C-------------------C-----C-------hhhH------HHHHHHHHhCCChhHHHHHHHHHHhCCCCCCh----
Q 040394 208 D-------------------K-----N-------VVSW------TSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQ---- 246 (691)
Q Consensus 208 ~-------------------~-----~-------~~~~------~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---- 246 (691)
- | | .+.| ...|..|.+.=++.+.-.+.-.+..-++.-+.
T Consensus 752 ~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~L 831 (1666)
T KOG0985|consen 752 CYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNL 831 (1666)
T ss_pred cCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHH
Confidence 0 1 1 1111 11233333333322222222222211111000
Q ss_pred -------hhHHHHHHHHHccCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhc------------
Q 040394 247 -------ITLGSLVTACAKLRALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNIRDARSVFDEL------------ 307 (691)
Q Consensus 247 -------~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~------------ 307 (691)
..-..+..-+-+.+++..-..+++.....|.+ |..++|+|...|...++-.+- ++++-
T Consensus 832 i~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~--fLkeN~yYDs~vVGkYC 908 (1666)
T KOG0985|consen 832 ILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPER--FLKENPYYDSKVVGKYC 908 (1666)
T ss_pred HHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHH--hcccCCcchhhHHhhhh
Confidence 01122334445566666667777777888865 889999999988876653321 11111
Q ss_pred CCCChh----HH------HHHHHHHHhcCCchhHHHHHHHhhHCCCCCcHHHHHHHHHHHhcCCChhhHHHHHHHHHHhC
Q 040394 308 CSIDLV----SW------TAMIVGYTQSGYPDKALKLFTDKKWADFFPNHVTIASVLSASAQLGNLNMGRMVHSLGIRLG 377 (691)
Q Consensus 308 ~~~~~~----~~------~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 377 (691)
.++|+. +| .-||..+-.+..+..--+.+ . -+.|...|..++. ..-..-+++.+...+.+
T Consensus 909 EKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYl---v---~R~D~~LW~~VL~-----e~n~~rRqLiDqVv~ta 977 (1666)
T KOG0985|consen 909 EKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYL---V---ERSDPDLWAKVLN-----EENPYRRQLIDQVVQTA 977 (1666)
T ss_pred cccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHH---H---hccChHHHHHHHh-----ccChHHHHHHHHHHHhc
Confidence 111111 01 11222221111111100000 0 0223334443332 11111233444444444
Q ss_pred CC---chhHHHHHHHHhHhcCChHHHHHHHHhCCCCC-chh-----HHHHHHhhhCCCCCCHHH---H---------HHH
Q 040394 378 LE---DYTVINALVDMYAKCHVIADARYIFETTSEKD-VIA-----WNSIISGLDDNVSPDAVT---L---------VSV 436 (691)
Q Consensus 378 ~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~-----~~~li~~~~~~~~p~~~~---~---------~~l 436 (691)
.+ ++...+..+.++...+-..+-.++++++.-.+ +.+ -|.+|-. .++.|..- | -.+
T Consensus 978 l~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLt---Aikad~trVm~YI~rLdnyDa~~i 1054 (1666)
T KOG0985|consen 978 LPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILT---AIKADRTRVMEYINRLDNYDAPDI 1054 (1666)
T ss_pred CCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHH---HhhcChHHHHHHHHHhccCCchhH
Confidence 33 45555555555555555555555555543211 100 0000000 00001000 0 011
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHhHHHHHHHHHhcCCChHHH
Q 040394 437 ISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMREKNTVTWSAMIGGYGMQGDGGGS 516 (691)
Q Consensus 437 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 516 (691)
...+...+-+++|..+|++. ..+....+.|+. ..+..+.|.+.-++..+ ...|+.+..+-.+.|...+|
T Consensus 1055 a~iai~~~LyEEAF~ifkkf------~~n~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dA 1123 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKF------DMNVSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDA 1123 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHh------cccHHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHH
Confidence 22334445566666666554 233444444443 34566777776666655 45788999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 040394 517 LALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENMPI 596 (691)
Q Consensus 517 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 596 (691)
++-|-+ .-|+..|..+++.+.+.|.+++-.+++... ++..-.|.+.+ .||-+|++.++..+-.+++.
T Consensus 1124 ieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~Ma-Rkk~~E~~id~--eLi~AyAkt~rl~elE~fi~---- 1190 (1666)
T KOG0985|consen 1124 IESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMA-RKKVREPYIDS--ELIFAYAKTNRLTELEEFIA---- 1190 (1666)
T ss_pred HHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHH-HHhhcCccchH--HHHHHHHHhchHHHHHHHhc----
Confidence 887753 346678899999999999999999988865 55455666544 78889999999988877764
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHH
Q 040394 597 EPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRE 658 (691)
Q Consensus 597 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 658 (691)
-||......+..-|...|.++.|.-++.. ..-|..|+..+...|.+..|...-+
T Consensus 1191 gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1191 GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 46777777788888888888888777764 4455666666666666666654443
No 55
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=2.7e-08 Score=91.61 Aligned_cols=414 Identities=8% Similarity=0.002 Sum_probs=186.2
Q ss_pred HcccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhCCChhHHHHHHH
Q 040394 156 CCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDETLDKNVVSWTSMIAGYVQNDCAQEGLVLFN 235 (691)
Q Consensus 156 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 235 (691)
+-+.|++++|..++..+.+..-++...+..|.-++.-.|.+.+|..+-.+.++ ++..-..|...-.+-|+-++-..+-+
T Consensus 67 ~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~ 145 (557)
T KOG3785|consen 67 YFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHS 145 (557)
T ss_pred HHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 34556666666666555554444445555555555555555665555544322 12222223333334444444333333
Q ss_pred HHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCCCchHHHHHH-HHHHHhcCCHHHHHHHHHhc---CCCC
Q 040394 236 RMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIGIEINSHLVTAL-LDMYVKCGNIRDARSVFDEL---CSID 311 (691)
Q Consensus 236 ~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~---~~~~ 311 (691)
.+... ...-.++.+..-..-..++|.+++...+..+ |+-...|.- .-+|.+..-++-+.++++-. ...+
T Consensus 146 ~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdS 218 (557)
T KOG3785|consen 146 SLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDS 218 (557)
T ss_pred HHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCc
Confidence 33221 0111111121112223445555555544321 222222222 22344444455555554433 2223
Q ss_pred hhHHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCcHHHHHH-HHH-HHhcCCChhhHHHHHHHHHHhCCCchhHHHHHHH
Q 040394 312 LVSWTAMIVGYTQSGYPDKALKLFTDKKWADFFPNHVTIAS-VLS-ASAQLGNLNMGRMVHSLGIRLGLEDYTVINALVD 389 (691)
Q Consensus 312 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~-ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 389 (691)
+.+.|.......+.-....|.+-.+++.+.+-.. ..+.. +++ -+..-.+-+.|.+++--+.+.-| .+.-.++-
T Consensus 219 tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~--~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IP---EARlNL~i 293 (557)
T KOG3785|consen 219 TIAKNLKACNLFRLINGRTAEDEKKELADNIDQE--YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIP---EARLNLII 293 (557)
T ss_pred HHHHHHHHHHHhhhhccchhHHHHHHHHhccccc--chhHHHHHHcCeEEEeCCccHHHhchHHHhhCh---Hhhhhhee
Confidence 3344444444444333333333333433332111 11111 111 11122333445554443333322 22334556
Q ss_pred HhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHH-----HHhccCcHHHHHHHHHHHHHcCCCCC
Q 040394 390 MYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVIS-----ACASLGAVQVGSSLHAYSTKQGLLSS 464 (691)
Q Consensus 390 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~-----~~~~~~~~~~a~~~~~~~~~~~~~~~ 464 (691)
-|.+.|++++|..+.++... ..|-......+.. -......+.-|.+.|+..-..+....
T Consensus 294 YyL~q~dVqeA~~L~Kdl~P----------------ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecD 357 (557)
T KOG3785|consen 294 YYLNQNDVQEAISLCKDLDP----------------TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECD 357 (557)
T ss_pred eecccccHHHHHHHHhhcCC----------------CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccc
Confidence 67788888888888887752 3454444333333 23334456677777777766654233
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHH-H
Q 040394 465 NVYVGTALLNFYAKCGDAQSARMVFDAMRE---KNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTIL-S 540 (691)
Q Consensus 465 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~ 540 (691)
+..--.++...+.-..++++.+..++.+.. .|-..--.+..+++..|++.+|.++|-+.....+ -|..+|.+++ +
T Consensus 358 TIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LAr 436 (557)
T KOG3785|consen 358 TIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLAR 436 (557)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHH
Confidence 333334455555555566666666665553 2222222355666666666666666655543322 2334444433 3
Q ss_pred HhcccCCHHHHHHHHHHchhhcCCCCChh-HHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHH
Q 040394 541 ACSHTGMVGEGWKCFYSMCRDFKFVPSMK-HYVCMVDLLARAGRLEEALEFMENM-PIEPDVSLF 603 (691)
Q Consensus 541 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~ 603 (691)
+|.+.+.++.|+.++-++ +-..+.. ....+...|.+++.+--|-+.|+.+ ...|++..|
T Consensus 437 Cyi~nkkP~lAW~~~lk~----~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnW 497 (557)
T KOG3785|consen 437 CYIRNKKPQLAWDMMLKT----NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENW 497 (557)
T ss_pred HHHhcCCchHHHHHHHhc----CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcccc
Confidence 556666666666655443 1111111 2222334455555555555555544 345555555
No 56
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.41 E-value=1.7e-07 Score=93.31 Aligned_cols=503 Identities=11% Similarity=0.086 Sum_probs=321.4
Q ss_pred cCchhHHHHHHHHHHhCC-CCch-hhhHHHHHHhcCCChHHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHH
Q 040394 60 KSTGSLKAFHALLIVDGL-TNDK-CNTKLVSMYGSFGHVKYARSVFDSMPNPDFYSFQVMIRWYFLNDLYKDIVEFYKCM 137 (691)
Q Consensus 60 ~~~~~a~~~~~~~~~~~~-~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 137 (691)
+.+..-+..++..+..-+ .... +|...+......|-.+.+.+++++...-++..-+--+.-++..+++++|-+.|...
T Consensus 116 ~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~v 195 (835)
T KOG2047|consen 116 GLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATV 195 (835)
T ss_pred chHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHh
Confidence 666677777777665432 2233 89999999999999999999999877666666788888899999999999999887
Q ss_pred HHc------CCCCCcchHHHHHHHHcccCChh---HHHHHHHHHHHhCCC-ChhHHHHHHHHhHhcCChHHHHHHHhccC
Q 040394 138 RKR------LKEHDNFVFSKVLKACCELRDID---EGMKVHCEIVKVGGP-DSFVLTGLVDMYAKCRDIGSSRQVFDETL 207 (691)
Q Consensus 138 ~~~------~~~~~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 207 (691)
+.. ..+.+...|..+-...++..+.- ....+++.+...-.+ -...|++|.+.|.+.|.++.|..++++..
T Consensus 196 ln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai 275 (835)
T KOG2047|consen 196 LNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAI 275 (835)
T ss_pred cCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 543 22445556666666655544332 244555555544444 56789999999999999999999999865
Q ss_pred CC--ChhhHHHHHHHHHh----------------CCC------hhHHHHHHHHHHhCCC-----------CCChhhHHHH
Q 040394 208 DK--NVVSWTSMIAGYVQ----------------NDC------AQEGLVLFNRMREGFV-----------EGNQITLGSL 252 (691)
Q Consensus 208 ~~--~~~~~~~li~~~~~----------------~g~------~~~A~~~~~~m~~~~~-----------~p~~~t~~~l 252 (691)
.. .+.-++.+-+.|++ .|+ ++-.+.-|+.+...+. +-++.+|..-
T Consensus 276 ~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kR 355 (835)
T KOG2047|consen 276 QTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKR 355 (835)
T ss_pred HhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhh
Confidence 42 22223333333321 111 2222333444333211 0011122111
Q ss_pred HHHHHccCChhhHHHHHHHHHHHCCCC------chHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-------hHHHHHH
Q 040394 253 VTACAKLRALHQGKWLHGYILKIGIEI------NSHLVTALLDMYVKCGNIRDARSVFDELCSIDL-------VSWTAMI 319 (691)
Q Consensus 253 i~~~~~~~~~~~a~~~~~~~~~~g~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~li 319 (691)
+ -+..|+..+....+.+..+. +.| -...|..+.+.|-..|+++.|..+|++..+-+- .+|....
T Consensus 356 V--~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~wa 432 (835)
T KOG2047|consen 356 V--KLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWA 432 (835)
T ss_pred h--hhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHH
Confidence 1 12345555666666666553 222 235688889999999999999999999844322 3566666
Q ss_pred HHHHhcCCchhHHHHHHHhhHCCCC----------C-------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCchh
Q 040394 320 VGYTQSGYPDKALKLFTDKKWADFF----------P-------NHVTIASVLSASAQLGNLNMGRMVHSLGIRLGLEDYT 382 (691)
Q Consensus 320 ~~~~~~g~~~~a~~~~~~m~~~g~~----------p-------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 382 (691)
..-.+..+++.|+++++......-. | +...|+..+..--..|-++..+.+++.+.+..+.++.
T Consensus 433 emElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPq 512 (835)
T KOG2047|consen 433 EMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQ 512 (835)
T ss_pred HHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHH
Confidence 6667788899999988776432111 1 2234555555555667888889999999998888777
Q ss_pred HHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCH-HHHHHHHHHHh---ccCcHHHHHHHHHHHHH
Q 040394 383 VINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDA-VTLVSVISACA---SLGAVQVGSSLHAYSTK 458 (691)
Q Consensus 383 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~-~~~~~ll~~~~---~~~~~~~a~~~~~~~~~ 458 (691)
+.......+-...-++++.++|++-..-- -.|+. ..|+.-+.-+. ....++.|..+|++..+
T Consensus 513 ii~NyAmfLEeh~yfeesFk~YErgI~LF--------------k~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 513 IIINYAMFLEEHKYFEESFKAYERGISLF--------------KWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHcCCccC--------------CCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 76666777777788899999998866531 12333 24444444333 23478999999999998
Q ss_pred cCCCCCchhHHHHHHHHHH----hcCCHHHHHHHHHhcccC-----CHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCC
Q 040394 459 QGLLSSNVYVGTALLNFYA----KCGDAQSARMVFDAMREK-----NTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQ 529 (691)
Q Consensus 459 ~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 529 (691)
+. ||.. ...+--.|+ +-|-...|..++++.... -...||+.|.-....=-+.....+|++.++. -
T Consensus 579 -~C-pp~~--aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--L 652 (835)
T KOG2047|consen 579 -GC-PPEH--AKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--L 652 (835)
T ss_pred -cC-CHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--C
Confidence 54 4332 222222333 457778888888886642 2346788776555544556667788888774 6
Q ss_pred CCHHHHHHHHH---HhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChH
Q 040394 530 PNEVIFTTILS---ACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLE 585 (691)
Q Consensus 530 p~~~~~~~ll~---~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 585 (691)
|+...-...+. .-++.|..+.|..++....+-..-..+...|.+.=..=.+.|+-+
T Consensus 653 p~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 653 PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence 76655443333 446778888888888766333222223566777767777778733
No 57
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.41 E-value=7.1e-10 Score=104.03 Aligned_cols=216 Identities=12% Similarity=0.099 Sum_probs=102.7
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCC-----------HhHHHHHHH
Q 040394 437 ISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMREKN-----------TVTWSAMIG 505 (691)
Q Consensus 437 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~li~ 505 (691)
.......|+.+.|..-...+.+.+ |.++.......++|.+.|++.+...++..+.+.. ..+|+.+++
T Consensus 160 arlll~~~d~~aA~~~v~~ll~~~--pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~ 237 (400)
T COG3071 160 ARLLLNRRDYPAARENVDQLLEMT--PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQ 237 (400)
T ss_pred HHHHHhCCCchhHHHHHHHHHHhC--cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444 4444455555555555555555555555544321 124444555
Q ss_pred HHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChH
Q 040394 506 GYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLE 585 (691)
Q Consensus 506 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 585 (691)
-....+..+.-...|++.-.. .+-++..-..++.-+...|+.++|.++..+..++ +..|+ ...++ ...+-++.+
T Consensus 238 q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~---L~~~~-~~l~~~d~~ 311 (400)
T COG3071 238 QARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPR---LCRLI-PRLRPGDPE 311 (400)
T ss_pred HHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChh---HHHHH-hhcCCCCch
Confidence 444444444444444444332 2333334444445555555555555555544322 33333 11111 122333333
Q ss_pred HHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHH
Q 040394 586 EALEFMENM--PIEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMK 661 (691)
Q Consensus 586 ~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 661 (691)
.-++..++. ..+.++-.+.+|...|.+++.+.+|...|+.+++..|+ ...+..++.++.+.|+..+|....++.+
T Consensus 312 ~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 312 PLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 333332222 11122245555666666666666666666666666665 5556666666666666666666655544
No 58
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=7.2e-09 Score=98.90 Aligned_cols=352 Identities=9% Similarity=0.028 Sum_probs=193.2
Q ss_pred ChhHHHHHHHHhHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhH--HHHHHHH
Q 040394 179 DSFVLTGLVDMYAKCRDIGSSRQVFDETLDKNVVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITL--GSLVTAC 256 (691)
Q Consensus 179 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~--~~li~~~ 256 (691)
|...+-.....+.+.|....|+..|.+....-+..|.+-+....--.+.+.+. .... |...|..-+ -.+..++
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~----~l~~-~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILS----ILVV-GLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHH----HHHh-cCcccchHHHHHHHHHHH
Confidence 66666666666777888899998888776544444444433322222222222 2211 121121111 1233344
Q ss_pred HccCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC------ChhHHHHHHHHHHhcCCchh
Q 040394 257 AKLRALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNIRDARSVFDELCSI------DLVSWTAMIVGYTQSGYPDK 330 (691)
Q Consensus 257 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~ 330 (691)
-.....+++.+-.......|+..+...-+....+.-...++|+|+.+|+++.+. |..+|+.++- .++.+..
T Consensus 238 ~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~~sk- 314 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKNDKSK- 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhhhHH-
Confidence 555577777777777888887767666666666667778888888888888443 4456655543 3322211
Q ss_pred HHHHHHHhhHCCCCCcHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCC
Q 040394 331 ALKLFTDKKWADFFPNHVTIASVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEK 410 (691)
Q Consensus 331 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 410 (691)
+..+.+-...--+--+.|...+.+-|+-.++-++|..+|+.+.+.++....+++.+..-
T Consensus 315 -Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHE-------------------- 373 (559)
T KOG1155|consen 315 -LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHE-------------------- 373 (559)
T ss_pred -HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHH--------------------
Confidence 11111111110122233444444445555555555555555555555544444444444
Q ss_pred CchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 040394 411 DVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFD 490 (691)
Q Consensus 411 ~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 490 (691)
|....+...|.+-++..++.. |.|-..|-.|.++|.-.+...-|+-.|+
T Consensus 374 -----------------------------yvEmKNt~AAi~sYRrAvdi~--p~DyRAWYGLGQaYeim~Mh~YaLyYfq 422 (559)
T KOG1155|consen 374 -----------------------------YVEMKNTHAAIESYRRAVDIN--PRDYRAWYGLGQAYEIMKMHFYALYYFQ 422 (559)
T ss_pred -----------------------------HHHhcccHHHHHHHHHHHhcC--chhHHHHhhhhHHHHHhcchHHHHHHHH
Confidence 444445555555555555544 5566666666666666666666666666
Q ss_pred hccc---CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhc---C-
Q 040394 491 AMRE---KNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDF---K- 563 (691)
Q Consensus 491 ~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~---~- 563 (691)
+..+ .|...|.+|..+|.+.++.++|++.|.+....| ..+...+..+...+.+.++..+|.+.|++.++.. |
T Consensus 423 kA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~ 501 (559)
T KOG1155|consen 423 KALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGE 501 (559)
T ss_pred HHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc
Confidence 5543 266667777777777777777777777766654 3355666667777777777777766666554422 1
Q ss_pred CCCC-hhHHHHHHHHHHhcCChHHHHHHH
Q 040394 564 FVPS-MKHYVCMVDLLARAGRLEEALEFM 591 (691)
Q Consensus 564 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~ 591 (691)
+.|. ......|..-+.+.+++++|....
T Consensus 502 ~~~~t~ka~~fLA~~f~k~~~~~~As~Ya 530 (559)
T KOG1155|consen 502 IDDETIKARLFLAEYFKKMKDFDEASYYA 530 (559)
T ss_pred cchHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 1221 222223444455666666665443
No 59
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.40 E-value=1.5e-09 Score=101.90 Aligned_cols=281 Identities=12% Similarity=0.036 Sum_probs=187.1
Q ss_pred cCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhccCC----CChhhHHHHHHHHHhCCChhHHHHHH
Q 040394 159 LRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDETLD----KNVVSWTSMIAGYVQNDCAQEGLVLF 234 (691)
Q Consensus 159 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~ 234 (691)
.|++..|+++..+-.+.+......|..-..+--+.|+.+.+-..+.+..+ ++...+-+........|+++.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 35555555555554444433444444444444455555555555554422 22333444445555555555555555
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCCCch-------HHHHHHHHHHHhcCCHHHHHHHHHhc
Q 040394 235 NRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIGIEINS-------HLVTALLDMYVKCGNIRDARSVFDEL 307 (691)
Q Consensus 235 ~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~ 307 (691)
.++.+.+.. +.........+|.+.|++.....++..+.+.|.-.|. .+|..+++-....+..+.-...++..
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 555544322 3344555555555666666666666666555543332 45666777666666666666777777
Q ss_pred CC---CChhHHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCcHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCchhHH
Q 040394 308 CS---IDLVSWTAMIVGYTQSGYPDKALKLFTDKKWADFFPNHVTIASVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVI 384 (691)
Q Consensus 308 ~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 384 (691)
+. .++..-.+++.-+.+.|+.++|.++..+-.+.+..|+. ..+-.+.+.++...-.+..+...+..+.++..+
T Consensus 256 pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~ 331 (400)
T COG3071 256 PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLL 331 (400)
T ss_pred cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCChhHH
Confidence 33 45667777888899999999999999999988877772 233466777888888888888888888888999
Q ss_pred HHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 040394 385 NALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQG 460 (691)
Q Consensus 385 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 460 (691)
.+|...|.+.+.+.+|...|+...+ ..|+..+|+.+.+++.+.|+.+.|.+..++....-
T Consensus 332 ~tLG~L~~k~~~w~kA~~~leaAl~----------------~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 332 STLGRLALKNKLWGKASEALEAALK----------------LRPSASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHh----------------cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 9999999999999999999997664 57888889989899999999888888888766433
No 60
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=1.4e-08 Score=100.06 Aligned_cols=191 Identities=10% Similarity=0.103 Sum_probs=115.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcccCC-HhHHHHHHHHHh--cCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCC
Q 040394 471 ALLNFYAKCGDAQSARMVFDAMREKN-TVTWSAMIGGYG--MQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGM 547 (691)
Q Consensus 471 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 547 (691)
.++.+|. +..+.+.++........ ...+.+++.... +......+.+++...-+....-.....-..++.....|+
T Consensus 314 ~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn 391 (652)
T KOG2376|consen 314 ALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGN 391 (652)
T ss_pred HHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCC
Confidence 3444443 45566666666665432 344445444332 223466777777777664222223455556667788899
Q ss_pred HHHHHHHHH--------HchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-----CCCCCHH----HHHHHHHHH
Q 040394 548 VGEGWKCFY--------SMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENM-----PIEPDVS----LFGAFLHGC 610 (691)
Q Consensus 548 ~~~A~~~~~--------~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~~~p~~~----~~~~l~~~~ 610 (691)
++.|.+++. .+ .+.+.. +.+...++..+.+.++.+.|..++.+. ...+... ++..+..--
T Consensus 392 ~~~A~~il~~~~~~~~ss~-~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~ 468 (652)
T KOG2376|consen 392 PEVALEILSLFLESWKSSI-LEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFK 468 (652)
T ss_pred HHHHHHHHHHHhhhhhhhh-hhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHH
Confidence 999999888 44 232333 445556777788877766666666555 1112222 333333334
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCCCccCCCee
Q 040394 611 GLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRGLSKSPGCS 672 (691)
Q Consensus 611 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 672 (691)
.+.|+.++|..+++++.+.+|++......++.+|++. +.+.|..+- +.+.|.++..
T Consensus 469 lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~-----k~L~p~~~l~ 524 (652)
T KOG2376|consen 469 LRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLS-----KKLPPLKGLK 524 (652)
T ss_pred HhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHh-----hcCCCcccch
Confidence 5779999999999999999999999988888887654 455555443 3444555443
No 61
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.36 E-value=2.4e-10 Score=114.00 Aligned_cols=280 Identities=9% Similarity=-0.027 Sum_probs=189.0
Q ss_pred ChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC------CChhHHHHHHHHHHhcCCchhHHHH
Q 040394 261 ALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNIRDARSVFDELCS------IDLVSWTAMIVGYTQSGYPDKALKL 334 (691)
Q Consensus 261 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~ 334 (691)
+..+|...|..+.+. +.-+..+...+..+|...+++++|.++|+.+.. .+...|++.+-.+-+.=. ---+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~---Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVA---LSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHH---HHHH
Confidence 345666666663333 222335556667777777777777777777622 355566666543322111 1111
Q ss_pred HHHhhHCCCCCcHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchh
Q 040394 335 FTDKKWADFFPNHVTIASVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVIA 414 (691)
Q Consensus 335 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 414 (691)
-+++.+. -+-.+.||..+.++|.-+++.+.|.+.|+.+++.++....+|+.+..-+.....+|.|...|+.....|+-
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r- 487 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR- 487 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-
Confidence 1222221 23356778888888888888888888888888887777777888888888888888888888876543211
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc
Q 040394 415 WNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE 494 (691)
Q Consensus 415 ~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 494 (691)
+-..|-.+...|.+.++.+.|+-.|++..+.+ |.+......+...+.+.|+.++|+.++++...
T Consensus 488 --------------hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ 551 (638)
T KOG1126|consen 488 --------------HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--PSNSVILCHIGRIQHQLKRKDKALQLYEKAIH 551 (638)
T ss_pred --------------hhHHHHhhhhheeccchhhHHHHHHHhhhcCC--ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence 11245556667888888888888888888877 67777777888888888888888888887653
Q ss_pred ---CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC
Q 040394 495 ---KNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEV-IFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS 567 (691)
Q Consensus 495 ---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~ 567 (691)
.|+..--..+..+...+++++|+..++++.+ +.|+.. .|..+...|.+.|+.+.|+.-|..+. .+.|.
T Consensus 552 ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~---~ldpk 623 (638)
T KOG1126|consen 552 LDPKNPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWAL---DLDPK 623 (638)
T ss_pred cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHh---cCCCc
Confidence 3555555566677778888888888888888 566664 45555568888888888888887663 34554
No 62
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.36 E-value=8.3e-10 Score=111.43 Aligned_cols=201 Identities=14% Similarity=0.182 Sum_probs=128.3
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHc-----CC-CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHhHHHHHHHHHhc
Q 040394 436 VISACASLGAVQVGSSLHAYSTKQ-----GL-LSSNVYVGTALLNFYAKCGDAQSARMVFDAMREKNTVTWSAMIGGYGM 509 (691)
Q Consensus 436 ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 509 (691)
+...|...+++++|..+|+++... |. -+....+++.|..+|.+.|++++|...+++.
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A----------------- 309 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERA----------------- 309 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHH-----------------
Confidence 444555566666666666555421 20 0223445556666777777777777665543
Q ss_pred CCChHHHHHHHHHHHHCC-CCCCHH-HHHHHHHHhcccCCHHHHHHHHHHchhhcC--CCCC----hhHHHHHHHHHHhc
Q 040394 510 QGDGGGSLALFSDMLNEE-VQPNEV-IFTTILSACSHTGMVGEGWKCFYSMCRDFK--FVPS----MKHYVCMVDLLARA 581 (691)
Q Consensus 510 ~~~~~~A~~~~~~m~~~g-~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~--~~p~----~~~~~~li~~~~~~ 581 (691)
++++++ ..| ..|... .++.+...|...+.+++|..+++...+.+. +.++ ..+++.|...|...
T Consensus 310 -------l~I~~~--~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~ 380 (508)
T KOG1840|consen 310 -------LEIYEK--LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKM 380 (508)
T ss_pred -------HHHHHH--hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHh
Confidence 233333 111 112222 234444456666666666666665443332 2222 45788888999999
Q ss_pred CChHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCC---CchhHHHHHHHH
Q 040394 582 GRLEEALEFMENM---------PIEPD-VSLFGAFLHGCGLYSRFDLGEVMIKKMLE----LHPD---KACYYVLVSNLY 644 (691)
Q Consensus 582 g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~p~---~~~~~~~l~~~~ 644 (691)
|++++|.++++++ +..+. ...++.|...|.+.+++.+|.++|.+... ..|+ ...+|..|+.+|
T Consensus 381 gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y 460 (508)
T KOG1840|consen 381 GKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALY 460 (508)
T ss_pred cchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Confidence 9999998888887 12222 34678888889999999999999998776 3444 456788999999
Q ss_pred HhCCCcHHHHHHHHHHHh
Q 040394 645 ASDGRWIRVNQVRELMKQ 662 (691)
Q Consensus 645 ~~~g~~~~A~~~~~~~~~ 662 (691)
.+.|++++|.++.+.+..
T Consensus 461 ~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 461 RAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHcccHHHHHHHHHHHHH
Confidence 999999999999888763
No 63
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.34 E-value=3.8e-10 Score=106.92 Aligned_cols=198 Identities=13% Similarity=0.095 Sum_probs=147.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040394 465 NVYVGTALLNFYAKCGDAQSARMVFDAMRE--K-NTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSA 541 (691)
Q Consensus 465 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 541 (691)
....+..+...+...|++++|...+++..+ | +...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 345555666667777777777777776553 2 45566667777777788888888887777653 3344566666677
Q ss_pred hcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 040394 542 CSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENM-PIEP-DVSLFGAFLHGCGLYSRFDLG 619 (691)
Q Consensus 542 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A 619 (691)
+...|++++|.+.+++.............+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 77888888888888877543222223456667788888999999999998887 3334 456788888889999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhC
Q 040394 620 EVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQR 663 (691)
Q Consensus 620 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 663 (691)
...++++.+..|+++..+..++.++...|+.++|.++.+.+.+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999988888888888999999999999999998877653
No 64
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.33 E-value=3.2e-09 Score=96.61 Aligned_cols=284 Identities=12% Similarity=0.045 Sum_probs=179.9
Q ss_pred CCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCCCc---hHHHHHHHHHHHhcCCHHHH
Q 040394 224 NDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIGIEIN---SHLVTALLDMYVKCGNIRDA 300 (691)
Q Consensus 224 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A 300 (691)
+++.++|.++|-+|.+... .+..+--++-+.+-+.|..+.|..+++.+.++---+. ....-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 3556666666666655211 1222333444555566666666666666554321111 12334566778888999999
Q ss_pred HHHHHhcCCCC---hhHHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCcH----HHHHHHHHHHhcCCChhhHHHHHHHH
Q 040394 301 RSVFDELCSID---LVSWTAMIVGYTQSGYPDKALKLFTDKKWADFFPNH----VTIASVLSASAQLGNLNMGRMVHSLG 373 (691)
Q Consensus 301 ~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~ 373 (691)
+.+|..+.+.+ ..+...|+..|-...+|++|++.-+++...+-.+.. ..|..+...+....+++.|...+..+
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 99999886532 346777888999999999999999888877655543 34556666667778888888888888
Q ss_pred HHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 040394 374 IRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLH 453 (691)
Q Consensus 374 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 453 (691)
.+.++..+.+--.+.+.+...|+++.|.+.++.+.+.| ..--..+...|..+|...|+.++....+
T Consensus 207 lqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn--------------~~yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 207 LQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQN--------------PEYLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred HhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhC--------------hHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 88888877777778888888888888888888887663 1122345566777777778887777777
Q ss_pred HHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc-c-cCCHhHHHHHHHHHhc---CCChHHHHHHHHHHHH
Q 040394 454 AYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAM-R-EKNTVTWSAMIGGYGM---QGDGGGSLALFSDMLN 525 (691)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~ 525 (691)
..+.+.. +....-..+.+.-......+.|...+.+- . +|+...+..+|..... .|...+-+..++.|..
T Consensus 273 ~~~~~~~---~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 273 RRAMETN---TGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHcc---CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 7776654 23333334444444444444554444332 2 3566666666655443 2334444555555554
No 65
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.32 E-value=6.4e-08 Score=98.52 Aligned_cols=485 Identities=13% Similarity=0.080 Sum_probs=252.5
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHH---cccCChhHH-------------------HHH----HHHHHHhC
Q 040394 123 LNDLYKDIVEFYKCMRKRLKEHDNFVFSKVLKAC---CELRDIDEG-------------------MKV----HCEIVKVG 176 (691)
Q Consensus 123 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~---~~~~~~~~a-------------------~~~----~~~~~~~~ 176 (691)
..++.+.++.-+......+...++.++..+...+ ...++.+++ ... +.++....
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~ 318 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKK 318 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhh
Confidence 3455566666666655555555555555444332 233444444 211 11111222
Q ss_pred CC-ChhHHHHHHHHhHhcCChHHHHHHHhccCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHH
Q 040394 177 GP-DSFVLTGLVDMYAKCRDIGSSRQVFDETLD---KNVVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSL 252 (691)
Q Consensus 177 ~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 252 (691)
+. |+.+|..|.-++.++|++..+.+.|++... .....|+.+-..+...|.-..|..+++.-......|+..+--.+
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 33 667777777777777777777777776533 24456777777777777777777777765543333433333333
Q ss_pred HH-HHH-ccCChhhHHHHHHHHHHHC--C--CCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 040394 253 VT-ACA-KLRALHQGKWLHGYILKIG--I--EINSHLVTALLDMYVKCGNIRDARSVFDELCSIDLVSWTAMIVGYTQSG 326 (691)
Q Consensus 253 i~-~~~-~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 326 (691)
+. .|. +.+..+++..+-....... . ......|..+.-+|...-. ..+..+ -+..
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~------------~a~~~s--------eR~~ 458 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR------------QANLKS--------ERDA 458 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh------------cCCChH--------HHHH
Confidence 33 232 4455555555555554411 0 1112222222222221100 000000 0111
Q ss_pred CchhHHHHHHHhhHCC-CCCcHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCC-chhHHHHHHHHhHhcCChHHHHHHH
Q 040394 327 YPDKALKLFTDKKWAD-FFPNHVTIASVLSASAQLGNLNMGRMVHSLGIRLGLE-DYTVINALVDMYAKCHVIADARYIF 404 (691)
Q Consensus 327 ~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~ 404 (691)
...++++.+++..+.+ -.|+..-|..+ -++..++++.|....++..+.+.. +...+..+.-.+...+++.+|..+.
T Consensus 459 ~h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vv 536 (799)
T KOG4162|consen 459 LHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVV 536 (799)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 2234555555554432 23333333332 234455666666666666666444 6666666666677777777776666
Q ss_pred HhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHH
Q 040394 405 ETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQS 484 (691)
Q Consensus 405 ~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 484 (691)
+.....- .-|......-++.-..-++.+++......+...---.+. ....++-..
T Consensus 537 d~al~E~---------------~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~----------~q~~~~~g~ 591 (799)
T KOG4162|consen 537 DAALEEF---------------GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYG----------VQQTLDEGK 591 (799)
T ss_pred HHHHHHh---------------hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhh----------Hhhhhhhhh
Confidence 6543320 000000011111111234455554444433321100000 000111112
Q ss_pred HHHHHHhcc----cC--CHhHHHHHHHHHh---cCCChHHHHHHHHHHHHCCCC--CCH------HHHHHHHHHhcccCC
Q 040394 485 ARMVFDAMR----EK--NTVTWSAMIGGYG---MQGDGGGSLALFSDMLNEEVQ--PNE------VIFTTILSACSHTGM 547 (691)
Q Consensus 485 A~~~~~~~~----~~--~~~~~~~li~~~~---~~~~~~~A~~~~~~m~~~g~~--p~~------~~~~~ll~~~~~~g~ 547 (691)
..+....+. ++ ...++.-+..-.. +.-..+.. |...-+. |+. ..|......+.+.+.
T Consensus 592 ~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~ 665 (799)
T KOG4162|consen 592 LLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGN 665 (799)
T ss_pred hhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCC
Confidence 222222221 00 1112222111111 11111111 1111112 221 223344456677788
Q ss_pred HHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHH--H
Q 040394 548 VGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEFMENM-PIEPDV-SLFGAFLHGCGLYSRFDLGEV--M 622 (691)
Q Consensus 548 ~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~--~ 622 (691)
.++|...+.+.. ++.|- ...|......+...|.+++|.+.|... ...|+. .+..++...+.+.|+...|.. +
T Consensus 666 ~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~ 742 (799)
T KOG4162|consen 666 DDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSL 742 (799)
T ss_pred chHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHH
Confidence 888887777552 34454 556777777888899999999888777 666754 588888889999999888888 9
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhC
Q 040394 623 IKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQR 663 (691)
Q Consensus 623 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 663 (691)
+..+++.+|.++..|+.++.++.+.|+.++|.+-|....+-
T Consensus 743 L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 743 LSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999888763
No 66
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.31 E-value=1.1e-07 Score=94.80 Aligned_cols=430 Identities=12% Similarity=0.069 Sum_probs=250.8
Q ss_pred HHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhccCCC---ChhhHHHHHHHHHhCC
Q 040394 149 FSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDETLDK---NVVSWTSMIAGYVQND 225 (691)
Q Consensus 149 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g 225 (691)
|..+++.| ..+++....+..+.+++..++...+.....-.+...|+-++|......-.+. +.+.|..+.-.+....
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK 89 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK 89 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh
Confidence 44444544 3456666777777777754556666666666667777777877777665543 5567888888888888
Q ss_pred ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHH
Q 040394 226 CAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNIRDARSVFD 305 (691)
Q Consensus 226 ~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 305 (691)
++++|++.|...... .||. ..++.-+.-.-...|+++.....-.
T Consensus 90 ~Y~eaiKcy~nAl~~--~~dN----------------------------------~qilrDlslLQ~QmRd~~~~~~tr~ 133 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKI--EKDN----------------------------------LQILRDLSLLQIQMRDYEGYLETRN 133 (700)
T ss_pred hHHHHHHHHHHHHhc--CCCc----------------------------------HHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 888898888888763 2332 1122211111122233333222222
Q ss_pred hc---CCCChhHHHHHHHHHHhcCCchhHHHHHHHhhHCC-CCCcHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCch
Q 040394 306 EL---CSIDLVSWTAMIVGYTQSGYPDKALKLFTDKKWAD-FFPNHVTIASVLSASAQLGNLNMGRMVHSLGIRLGLEDY 381 (691)
Q Consensus 306 ~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 381 (691)
.. .......|..+..++.-.|++..|..++++..+.. -.|+...|......+
T Consensus 134 ~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~L------------------------ 189 (700)
T KOG1156|consen 134 QLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLL------------------------ 189 (700)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHH------------------------
Confidence 22 23355678888888888899999999999887764 245655553332211
Q ss_pred hHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHH-HHHHHHHhccCcHHHHHHHHHHHHHcC
Q 040394 382 TVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTL-VSVISACASLGAVQVGSSLHAYSTKQG 460 (691)
Q Consensus 382 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~ 460 (691)
.-.....+.|.+++|.+.+...... ..|...+ ..-...+.+.+++++|..++..+....
T Consensus 190 ----y~n~i~~E~g~~q~ale~L~~~e~~----------------i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn 249 (700)
T KOG1156|consen 190 ----YQNQILIEAGSLQKALEHLLDNEKQ----------------IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN 249 (700)
T ss_pred ----HHHHHHHHcccHHHHHHHHHhhhhH----------------HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC
Confidence 1122344555566666655554322 1122222 122334556677777777777777766
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHH-HHHHhcccC---CHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 040394 461 LLSSNVYVGTALLNFYAKCGDAQSAR-MVFDAMREK---NTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFT 536 (691)
Q Consensus 461 ~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 536 (691)
|.+...|-.+..++.+-.+.-++. .+|....+. ....-..=+.......-.+..-.++..+.+.|+++-...+.
T Consensus 250 --Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~ 327 (700)
T KOG1156|consen 250 --PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLR 327 (700)
T ss_pred --chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhH
Confidence 566666666666665333333333 555544321 00000000111111222334456667777777665433333
Q ss_pred HHHHHhcccCCHH----HHHHHHHHchhhcC---------C-CCChh--HHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 040394 537 TILSACSHTGMVG----EGWKCFYSMCRDFK---------F-VPSMK--HYVCMVDLLARAGRLEEALEFMENM-PIEPD 599 (691)
Q Consensus 537 ~ll~~~~~~g~~~----~A~~~~~~m~~~~~---------~-~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 599 (691)
++- -.....+ -+..+...+ ...| . +|... ++-.++..+-+.|+++.|..+++.. +-.|+
T Consensus 328 SLy---k~p~k~~~le~Lvt~y~~~L-~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPT 403 (700)
T KOG1156|consen 328 SLY---KDPEKVAFLEKLVTSYQHSL-SGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPT 403 (700)
T ss_pred HHH---hchhHhHHHHHHHHHHHhhc-ccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCch
Confidence 322 1111111 111122211 1111 1 33433 3345677788999999999999988 76777
Q ss_pred HH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCCC
Q 040394 600 VS-LFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRGL 665 (691)
Q Consensus 600 ~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 665 (691)
.. .|..=.+.+.+.|+++.|..+++++.+++-.|..+...-+.-..+..+.++|.++....-+.|.
T Consensus 404 liEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 404 LIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 64 5555567788999999999999999998877677776777888899999999999988887774
No 67
>PF13041 PPR_2: PPR repeat family
Probab=99.29 E-value=8.2e-12 Score=84.22 Aligned_cols=50 Identities=26% Similarity=0.485 Sum_probs=39.9
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 040394 209 KNVVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAK 258 (691)
Q Consensus 209 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~ 258 (691)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67778888888888888888888888888888888888888888877764
No 68
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.29 E-value=2e-07 Score=93.14 Aligned_cols=228 Identities=10% Similarity=-0.026 Sum_probs=110.3
Q ss_pred CCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHH
Q 040394 124 NDLYKDIVEFYKCMRKRLKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVF 203 (691)
Q Consensus 124 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 203 (691)
.+++.+.+++.+.+.+. .+--..|....--.+...|+.++|....+.-.+.++.+...|..+.-.+....++++|++-|
T Consensus 20 ~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 34555555555555542 22222333333333444556666666555555555555556666655555556666666666
Q ss_pred hccCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCC-CC
Q 040394 204 DETLD---KNVVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIGI-EI 279 (691)
Q Consensus 204 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~-~~ 279 (691)
..... .|...|.-+.-.-.+.|+++...+...+..+... .....|..+..+..-.|+...|..++++..+... .|
T Consensus 99 ~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~ 177 (700)
T KOG1156|consen 99 RNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSP 177 (700)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 54321 2444444444444455555555555554444211 1233444455555555566666666655554432 33
Q ss_pred chHHHHHHH------HHHHhcCCHHHHHHHHHhcCCC--Chh-HHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCcHHHH
Q 040394 280 NSHLVTALL------DMYVKCGNIRDARSVFDELCSI--DLV-SWTAMIVGYTQSGYPDKALKLFTDKKWADFFPNHVTI 350 (691)
Q Consensus 280 ~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 350 (691)
+...+.... ....+.|..++|.+.+...... |-. .-..-...+.+.+++++|..++..++.. .||..-|
T Consensus 178 s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Y 255 (700)
T KOG1156|consen 178 SKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDY 255 (700)
T ss_pred CHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHH
Confidence 433333222 2234455555555555443211 111 1122233455666666666666666654 4555555
Q ss_pred HHHHH
Q 040394 351 ASVLS 355 (691)
Q Consensus 351 ~~ll~ 355 (691)
...+.
T Consensus 256 y~~l~ 260 (700)
T KOG1156|consen 256 YEGLE 260 (700)
T ss_pred HHHHH
Confidence 54444
No 69
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.27 E-value=2.3e-07 Score=93.52 Aligned_cols=512 Identities=11% Similarity=0.057 Sum_probs=248.7
Q ss_pred cCchhHHHHHHHHH-------HhCCCCchhhhHHHHHHhcCCChHHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHH
Q 040394 60 KSTGSLKAFHALLI-------VDGLTNDKCNTKLVSMYGSFGHVKYARSVFDSMPNPDFYSFQVMIRWYFLNDLYKDIVE 132 (691)
Q Consensus 60 ~~~~~a~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 132 (691)
++...++.+|+... +.|...+.+|.--...-.-..++.+|+.+|-+-. .-..-+..|-...+|++|+.
T Consensus 504 ~dvak~r~lhd~~eiadeas~~~ggdgt~fykvra~lail~kkfk~ae~ifleqn-----~te~aigmy~~lhkwde~i~ 578 (1636)
T KOG3616|consen 504 GDVAKARFLHDILEIADEASIEIGGDGTDFYKVRAMLAILEKKFKEAEMIFLEQN-----ATEEAIGMYQELHKWDEAIA 578 (1636)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhCCCCchHHHHHHHHHHHHhhhhHHHHHHHhcc-----cHHHHHHHHHHHHhHHHHHH
Confidence 55666666665432 2222333333322222222345666666653211 11223334444445555554
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhc--cCCCC
Q 040394 133 FYKCMRKRLKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDE--TLDKN 210 (691)
Q Consensus 133 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~ 210 (691)
+-+. .|.+.-...-.+.++++...|+-+.|-++-. +..--.+-|+.|.+.|.+..|.+.... ....|
T Consensus 579 lae~---~~~p~~eklk~sy~q~l~dt~qd~ka~elk~--------sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~d 647 (1636)
T KOG3616|consen 579 LAEA---KGHPALEKLKRSYLQALMDTGQDEKAAELKE--------SDGDGLAAIQLYIKAGKPAKAARAALNDEELLAD 647 (1636)
T ss_pred HHHh---cCChHHHHHHHHHHHHHHhcCchhhhhhhcc--------ccCccHHHHHHHHHcCCchHHHHhhcCHHHhhcc
Confidence 4321 2322222233344555555565555544311 111123456778888887777665432 22345
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCCCchHH-HHHHHH
Q 040394 211 VVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIGIEINSHL-VTALLD 289 (691)
Q Consensus 211 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~ 289 (691)
......+..++.+..-+++|-++|+++.. | .-.+.++.+..-+.+|.++-+.. ++..+++ -.....
T Consensus 648 e~il~~ia~alik~elydkagdlfeki~d----~-----dkale~fkkgdaf~kaielarfa----fp~evv~lee~wg~ 714 (1636)
T KOG3616|consen 648 EEILEHIAAALIKGELYDKAGDLFEKIHD----F-----DKALECFKKGDAFGKAIELARFA----FPEEVVKLEEAWGD 714 (1636)
T ss_pred HHHHHHHHHHHHhhHHHHhhhhHHHHhhC----H-----HHHHHHHHcccHHHHHHHHHHhh----CcHHHhhHHHHHhH
Confidence 55555556666666666777777766642 1 11222232322333444332221 1111111 112223
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCcHHHHHHHHHHHhcCCChhhHHHH
Q 040394 290 MYVKCGNIRDARSVFDELCSIDLVSWTAMIVGYTQSGYPDKALKLFTDKKWADFFPNHVTIASVLSASAQLGNLNMGRMV 369 (691)
Q Consensus 290 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 369 (691)
.+...|+++.|..-|-+.. ..-.-+.+-....++.+|+.+++.+.... .-+.-|..+...|...|+++.|+.+
T Consensus 715 hl~~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~l 787 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEEL 787 (1636)
T ss_pred HHHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHH
Confidence 3444556666655553321 11122445566777888888887776652 2233455566677777888877777
Q ss_pred HHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHH
Q 040394 370 HSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVG 449 (691)
Q Consensus 370 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 449 (691)
|.+. ..++..|++|.+.|++..|.++-++.. |.......|..-..-+-..|++.+|
T Consensus 788 f~e~--------~~~~dai~my~k~~kw~da~kla~e~~----------------~~e~t~~~yiakaedldehgkf~ea 843 (1636)
T KOG3616|consen 788 FTEA--------DLFKDAIDMYGKAGKWEDAFKLAEECH----------------GPEATISLYIAKAEDLDEHGKFAEA 843 (1636)
T ss_pred HHhc--------chhHHHHHHHhccccHHHHHHHHHHhc----------------CchhHHHHHHHhHHhHHhhcchhhh
Confidence 6543 234667788888888888888777664 2233444555555556666777776
Q ss_pred HHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC-CHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCC
Q 040394 450 SSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMREK-NTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEV 528 (691)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 528 (691)
++++-.+. .|+ .-|.+|-+.|..+..+++.++-... =..|...+..-|-..|+...|.+.|-+..+
T Consensus 844 eqlyiti~-----~p~-----~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d--- 910 (1636)
T KOG3616|consen 844 EQLYITIG-----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD--- 910 (1636)
T ss_pred hheeEEcc-----Cch-----HHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---
Confidence 66653321 122 2355667777777766666654421 122444555666666777766666544332
Q ss_pred CCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 040394 529 QPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENMPIEPDVSLFGAFLH 608 (691)
Q Consensus 529 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 608 (691)
|...+..|...+.+++|.++-+ ..-|-.... .+.-...+.=--+.|.+++.+.+. ...-+.
T Consensus 911 ------~kaavnmyk~s~lw~dayriak---tegg~n~~k----~v~flwaksiggdaavkllnk~gl------l~~~id 971 (1636)
T KOG3616|consen 911 ------FKAAVNMYKASELWEDAYRIAK---TEGGANAEK----HVAFLWAKSIGGDAAVKLLNKHGL------LEAAID 971 (1636)
T ss_pred ------HHHHHHHhhhhhhHHHHHHHHh---ccccccHHH----HHHHHHHHhhCcHHHHHHHHhhhh------HHHHhh
Confidence 3334444555556666655543 111111111 111111222222334444444321 111112
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCCC
Q 040394 609 GCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRGL 665 (691)
Q Consensus 609 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 665 (691)
-.+..+-++-|.++-+-..+ ...+.....++..+...|++++|.+.+-+.++.+-
T Consensus 972 ~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyveaiklnt 1026 (1636)
T KOG3616|consen 972 FAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNT 1026 (1636)
T ss_pred hhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHhhccc
Confidence 22233444444444332222 12234555666666777777777666666555443
No 70
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.26 E-value=9.7e-08 Score=96.13 Aligned_cols=422 Identities=13% Similarity=0.102 Sum_probs=213.5
Q ss_pred HcccCChhHHHHHHHHHH-------HhCCCChhHHHHHHHHhHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhCCChh
Q 040394 156 CCELRDIDEGMKVHCEIV-------KVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDETLDKNVVSWTSMIAGYVQNDCAQ 228 (691)
Q Consensus 156 ~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 228 (691)
|+..|++.+|..+++-.. +.|.+....|..-.....-..++.+|..+|-+-. .-...|..|....+|+
T Consensus 500 faai~dvak~r~lhd~~eiadeas~~~ggdgt~fykvra~lail~kkfk~ae~ifleqn-----~te~aigmy~~lhkwd 574 (1636)
T KOG3616|consen 500 FAAIGDVAKARFLHDILEIADEASIEIGGDGTDFYKVRAMLAILEKKFKEAEMIFLEQN-----ATEEAIGMYQELHKWD 574 (1636)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCchHHHHHHHHHHHHhhhhHHHHHHHhcc-----cHHHHHHHHHHHHhHH
Confidence 334455555554444332 2233333444444444444556777777764421 1123345555556677
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHh--
Q 040394 229 EGLVLFNRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNIRDARSVFDE-- 306 (691)
Q Consensus 229 ~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-- 306 (691)
+|+.+-+-. |.+.-...-.+-+.++...|+-+.|-++- . .+-. --+-|..|.+.|..-+|.+....
T Consensus 575 e~i~lae~~---~~p~~eklk~sy~q~l~dt~qd~ka~elk----~----sdgd-~laaiqlyika~~p~~a~~~a~n~~ 642 (1636)
T KOG3616|consen 575 EAIALAEAK---GHPALEKLKRSYLQALMDTGQDEKAAELK----E----SDGD-GLAAIQLYIKAGKPAKAARAALNDE 642 (1636)
T ss_pred HHHHHHHhc---CChHHHHHHHHHHHHHHhcCchhhhhhhc----c----ccCc-cHHHHHHHHHcCCchHHHHhhcCHH
Confidence 766654332 22111222234455555555555544331 1 0111 12345667777776666554321
Q ss_pred cCCCChhHHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCcHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCC--chhHH
Q 040394 307 LCSIDLVSWTAMIVGYTQSGYPDKALKLFTDKKWADFFPNHVTIASVLSASAQLGNLNMGRMVHSLGIRLGLE--DYTVI 384 (691)
Q Consensus 307 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~ 384 (691)
....|......+..++.+..-+++|-++|+++.. | ...+.++.+..-+-+|.++-+.. .+ -...-
T Consensus 643 ~l~~de~il~~ia~alik~elydkagdlfeki~d----~-----dkale~fkkgdaf~kaielarfa----fp~evv~le 709 (1636)
T KOG3616|consen 643 ELLADEEILEHIAAALIKGELYDKAGDLFEKIHD----F-----DKALECFKKGDAFGKAIELARFA----FPEEVVKLE 709 (1636)
T ss_pred HhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC----H-----HHHHHHHHcccHHHHHHHHHHhh----CcHHHhhHH
Confidence 1223444444445555555555555555555432 1 11222222222233333221111 11 11112
Q ss_pred HHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC
Q 040394 385 NALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSS 464 (691)
Q Consensus 385 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 464 (691)
......+...|+++.|...|-+... ....+.+......+..|..+++.+.++. .
T Consensus 710 e~wg~hl~~~~q~daainhfiea~~-----------------------~~kaieaai~akew~kai~ildniqdqk---~ 763 (1636)
T KOG3616|consen 710 EAWGDHLEQIGQLDAAINHFIEANC-----------------------LIKAIEAAIGAKEWKKAISILDNIQDQK---T 763 (1636)
T ss_pred HHHhHHHHHHHhHHHHHHHHHHhhh-----------------------HHHHHHHHhhhhhhhhhHhHHHHhhhhc---c
Confidence 3334445555666666655544321 1223344455666777777777666553 3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc
Q 040394 465 NVYVGTALLNFYAKCGDAQSARMVFDAMREKNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSH 544 (691)
Q Consensus 465 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 544 (691)
....|..+.+-|...|+++.|.++|-+.- .++-.|..|.+.|+++.|.++-.+.. |.......|..-..-+-+
T Consensus 764 ~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedlde 836 (1636)
T KOG3616|consen 764 ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDE 836 (1636)
T ss_pred ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHh
Confidence 44556667777777777777777776543 34555677777777777777665543 223333445444455566
Q ss_pred cCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040394 545 TGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENMPIEPDVSLFGAFLHGCGLYSRFDLGEVMIK 624 (691)
Q Consensus 545 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 624 (691)
.|++.+|.++|-.+ -.|+. -|.+|-+.|..++.+++.++.....-..|...+..-+-..|+...|+..|-
T Consensus 837 hgkf~eaeqlyiti-----~~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 837 HGKFAEAEQLYITI-----GEPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred hcchhhhhheeEEc-----cCchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHH
Confidence 77777777666543 13442 345667777777777777766322223455556666666777777766665
Q ss_pred HHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHH
Q 040394 625 KMLELHPDKACYYVLVSNLYASDGRWIRVNQVRE 658 (691)
Q Consensus 625 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 658 (691)
++-+ +..-.++|..++.|++|.++-+
T Consensus 907 ea~d--------~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 907 EAGD--------FKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred hhhh--------HHHHHHHhhhhhhHHHHHHHHh
Confidence 5332 2233455566666666655443
No 71
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=6.3e-06 Score=86.48 Aligned_cols=272 Identities=10% Similarity=0.063 Sum_probs=133.8
Q ss_pred CChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHH----HH------HhCCCCCch----hH------HHHHH
Q 040394 361 GNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARY----IF------ETTSEKDVI----AW------NSIIS 420 (691)
Q Consensus 361 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~----~~------~~~~~~~~~----~~------~~li~ 420 (691)
+++..-..+++.....|..++.++|++...|...++-.+-.- .| +-..++|+. +| .-+|
T Consensus 852 NRLklLlp~LE~~i~eG~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI- 930 (1666)
T KOG0985|consen 852 NRLKLLLPWLESLIQEGSQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELI- 930 (1666)
T ss_pred hhHHHHHHHHHHHHhccCcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHH-
Confidence 333344456677788888899999999999988776443210 00 011111110 00 0011
Q ss_pred hhhCCCCCCHHHHHHHHHHHhccCcHHHHHHH-----------HHHHHHcCC-CCCchhHHHHHHHHHHhcCCHHHHHHH
Q 040394 421 GLDDNVSPDAVTLVSVISACASLGAVQVGSSL-----------HAYSTKQGL-LSSNVYVGTALLNFYAKCGDAQSARMV 488 (691)
Q Consensus 421 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~-----------~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 488 (691)
++-.....|....+-+.++.+.+.-.++ .+.....++ ...++.-...-+.++...+-..+-.++
T Consensus 931 ----~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIEL 1006 (1666)
T KOG0985|consen 931 ----NVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIEL 1006 (1666)
T ss_pred ----HhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHH
Confidence 1112223344444444445554443333 333343333 124566667778888888888888888
Q ss_pred HHhcc-cCC-----HhHHHHHHHHH---------------------------hcCCChHHHHHHHHHHHHCCCCCCHHHH
Q 040394 489 FDAMR-EKN-----TVTWSAMIGGY---------------------------GMQGDGGGSLALFSDMLNEEVQPNEVIF 535 (691)
Q Consensus 489 ~~~~~-~~~-----~~~~~~li~~~---------------------------~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 535 (691)
++++. +++ ...-|.|+-.. ..++-+++|+.+|++. ..+....
T Consensus 1007 LEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf-----~~n~~A~ 1081 (1666)
T KOG0985|consen 1007 LEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKF-----DMNVSAI 1081 (1666)
T ss_pred HHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHh-----cccHHHH
Confidence 88876 221 11222222222 2233344444444432 2222222
Q ss_pred HHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 040394 536 TTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENMPIEPDVSLFGAFLHGCGLYSR 615 (691)
Q Consensus 536 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 615 (691)
+.++. ..+.+++|.++-++. -.+..|+.+..+-.+.|...+|++-|-+.. |+..|...+..+.+.|.
T Consensus 1082 ~VLie---~i~~ldRA~efAe~~-------n~p~vWsqlakAQL~~~~v~dAieSyikad---Dps~y~eVi~~a~~~~~ 1148 (1666)
T KOG0985|consen 1082 QVLIE---NIGSLDRAYEFAERC-------NEPAVWSQLAKAQLQGGLVKDAIESYIKAD---DPSNYLEVIDVASRTGK 1148 (1666)
T ss_pred HHHHH---HhhhHHHHHHHHHhh-------CChHHHHHHHHHHHhcCchHHHHHHHHhcC---CcHHHHHHHHHHHhcCc
Confidence 22222 233444444444332 123456666666666666666666555543 44556666666666666
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHH
Q 040394 616 FDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQV 656 (691)
Q Consensus 616 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 656 (691)
+++-..++.-+.+.... +.+-..|+.+|++.++..+-.++
T Consensus 1149 ~edLv~yL~MaRkk~~E-~~id~eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1149 YEDLVKYLLMARKKVRE-PYIDSELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred HHHHHHHHHHHHHhhcC-ccchHHHHHHHHHhchHHHHHHH
Confidence 66666665555443222 22333344444555554444333
No 72
>PF13041 PPR_2: PPR repeat family
Probab=99.24 E-value=2.3e-11 Score=82.02 Aligned_cols=50 Identities=28% Similarity=0.494 Sum_probs=48.1
Q ss_pred CChhHHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCcHHHHHHHHHHHhc
Q 040394 310 IDLVSWTAMIVGYTQSGYPDKALKLFTDKKWADFFPNHVTIASVLSASAQ 359 (691)
Q Consensus 310 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 359 (691)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 73
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=1e-07 Score=87.90 Aligned_cols=470 Identities=11% Similarity=0.050 Sum_probs=285.9
Q ss_pred HHHHcccCChhHHHHHHHHHHHhCCC-ChhHHHHHHHHhHhcCChHHHHHHHhccCC---CChhhHHHHHHHHHhCCChh
Q 040394 153 LKACCELRDIDEGMKVHCEIVKVGGP-DSFVLTGLVDMYAKCRDIGSSRQVFDETLD---KNVVSWTSMIAGYVQNDCAQ 228 (691)
Q Consensus 153 l~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 228 (691)
+.-+....|+..|..+++.-...+-+ ...+-.-+..++.+.|++++|...+..+.+ ++...+-.|..++.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 44455677888888888877765544 334445567788899999999999987643 56677777877777888899
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 040394 229 EGLVLFNRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNIRDARSVFDELC 308 (691)
Q Consensus 229 ~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 308 (691)
+|..+-....+ +.---..++...-+.|+-++-..+.+.+.+. ..---+|.......-.+.+|++++.++.
T Consensus 109 eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 109 EAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 98887666522 2333344555556777777766666665432 1233445555555567899999999884
Q ss_pred C--CChhHHHHHH-HHHHhcCCchhHHHHHHHhhHCCCCCcHH-HHHHHHHHHhcCCChhhHHHHHHHHHHhCCCchhHH
Q 040394 309 S--IDLVSWTAMI-VGYTQSGYPDKALKLFTDKKWADFFPNHV-TIASVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVI 384 (691)
Q Consensus 309 ~--~~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 384 (691)
. |+-...|.-+ -.|.+..-++-+.++++-.... .||+. ..+.......+.=+-..|++-.+.+.+.+.......
T Consensus 179 ~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~ 256 (557)
T KOG3785|consen 179 QDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFI 256 (557)
T ss_pred hcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhH
Confidence 3 4444555444 3566777777777777776654 44443 233222222222222223333333333322211111
Q ss_pred HHHHHH-hHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCC
Q 040394 385 NALVDM-YAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLS 463 (691)
Q Consensus 385 ~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 463 (691)
..+++. +.--..-+.|++++-.+.+ +-| ..-..|+--|.+.+++.+|..+.+++. |
T Consensus 257 ~~l~rHNLVvFrngEgALqVLP~L~~----------------~IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~-----P 313 (557)
T KOG3785|consen 257 EYLCRHNLVVFRNGEGALQVLPSLMK----------------HIP--EARLNLIIYYLNQNDVQEAISLCKDLD-----P 313 (557)
T ss_pred HHHHHcCeEEEeCCccHHHhchHHHh----------------hCh--HhhhhheeeecccccHHHHHHHHhhcC-----C
Confidence 111110 0011122334444333221 222 233455556788999999988776542 4
Q ss_pred CchhHHHHHHHHHHhcC-------CHHHHHHHHHhcccC-----CHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCC
Q 040394 464 SNVYVGTALLNFYAKCG-------DAQSARMVFDAMREK-----NTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPN 531 (691)
Q Consensus 464 ~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 531 (691)
.++.-|-.-.-.++..| ...-|...|+..-+. .+..-.++...+.-..++++++-.+...... +..|
T Consensus 314 ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~Nd 392 (557)
T KOG3785|consen 314 TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTND 392 (557)
T ss_pred CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCc
Confidence 45544433333333333 344566666655432 3445666777777778889999888888775 3344
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHH-HHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHH-HHH
Q 040394 532 EVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHY-VCMVDLLARAGRLEEALEFMENMPIEPDVSLFGAF-LHG 609 (691)
Q Consensus 532 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l-~~~ 609 (691)
...-..+.++.+..|++.+|+++|-.+ ....++ |..+| ..|.+.|.+++.++-|++++-++..+.+..+...+ ..-
T Consensus 393 D~Fn~N~AQAk~atgny~eaEelf~~i-s~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~ 470 (557)
T KOG3785|consen 393 DDFNLNLAQAKLATGNYVEAEELFIRI-SGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIAND 470 (557)
T ss_pred chhhhHHHHHHHHhcChHHHHHHHhhh-cChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 443345678999999999999999876 332333 34444 45678889999999999999999755555555444 456
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCCCccCCC
Q 040394 610 CGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRGLSKSPG 670 (691)
Q Consensus 610 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 670 (691)
|.+.+.+=-|-+.|..+..++|+ +..|. |+...-..++..+....-.|.|+
T Consensus 471 CYk~~eFyyaaKAFd~lE~lDP~-pEnWe---------GKRGACaG~f~~l~~~~~~~~p~ 521 (557)
T KOG3785|consen 471 CYKANEFYYAAKAFDELEILDPT-PENWE---------GKRGACAGLFRQLANHKTDPIPI 521 (557)
T ss_pred HHHHHHHHHHHHhhhHHHccCCC-ccccC---------CccchHHHHHHHHHcCCCCCCch
Confidence 88899988888899888888888 66664 34444455666665544444443
No 74
>PRK12370 invasion protein regulator; Provisional
Probab=99.19 E-value=6.5e-09 Score=110.65 Aligned_cols=246 Identities=11% Similarity=0.003 Sum_probs=181.1
Q ss_pred CChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCC-HHHHHHHHHHHh---------ccCcHHHHHHHHHHHHHcCCCCC
Q 040394 395 HVIADARYIFETTSEKDVIAWNSIISGLDDNVSPD-AVTLVSVISACA---------SLGAVQVGSSLHAYSTKQGLLSS 464 (691)
Q Consensus 395 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~-~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~ 464 (691)
+.+++|...|++..+.| |+ ...+..+..++. ..++.++|...+++..+.+ |.
T Consensus 275 ~~~~~A~~~~~~Al~ld----------------P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld--P~ 336 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS----------------PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD--HN 336 (553)
T ss_pred HHHHHHHHHHHHHHhcC----------------CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC--CC
Confidence 34678888888887653 44 334444444332 2345899999999999988 78
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHH
Q 040394 465 NVYVGTALLNFYAKCGDAQSARMVFDAMRE--K-NTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEV-IFTTILS 540 (691)
Q Consensus 465 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~ 540 (691)
+...+..+...+...|++++|...|++..+ | +...|..+...+...|++++|+..+++..+. .|+.. .+..++.
T Consensus 337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~ 414 (553)
T PRK12370 337 NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLW 414 (553)
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHH
Confidence 899999999999999999999999999775 4 4668888999999999999999999999985 55532 3333444
Q ss_pred HhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHH
Q 040394 541 ACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEFMENM-PIEPDVS-LFGAFLHGCGLYSRFD 617 (691)
Q Consensus 541 ~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~ 617 (691)
.+...|++++|...+++.... ..|+ ...+..+..+|...|+.++|.+.++++ ...|+.. ..+.+...+...| +
T Consensus 415 ~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~ 490 (553)
T PRK12370 415 ITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--E 490 (553)
T ss_pred HHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--H
Confidence 566689999999999987433 2354 555777888899999999999999998 4455543 4555556667777 4
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCCC
Q 040394 618 LGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRGL 665 (691)
Q Consensus 618 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 665 (691)
.|...++++++..-..+.....+..+|.-.|+-+.+..+ +++.+.|.
T Consensus 491 ~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 491 RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 888888887763222222222366778888888888777 88877654
No 75
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.18 E-value=4.2e-07 Score=95.05 Aligned_cols=565 Identities=11% Similarity=-0.007 Sum_probs=273.9
Q ss_pred hHHHHHHHHHHhCCCCch--hhhHHHHHHhcCCChHHHHHHhccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHH
Q 040394 64 SLKAFHALLIVDGLTNDK--CNTKLVSMYGSFGHVKYARSVFDSMPN---PDFYSFQVMIRWYFLNDLYKDIVEFYKCMR 138 (691)
Q Consensus 64 ~a~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 138 (691)
.+..++..+......++- .|..|...|....+...|.+.|++.-+ .+..++......|++..+++.|..+.-..-
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 445555555544444444 788899999988888899999987755 456678888899999999999988743332
Q ss_pred HcCC-CCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhccCCCChh-hHHH
Q 040394 139 KRLK-EHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDETLDKNVV-SWTS 216 (691)
Q Consensus 139 ~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~ 216 (691)
+... ..-...|...--.+...++...|..-|+...+..|.|...|..|+.+|.++|++..|.++|++...-++. .|..
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~ 633 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGR 633 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHH
Confidence 2210 0011223333334567788889999999988888889999999999999999999999999776442222 2222
Q ss_pred H--HHHHHhCCChhHHHHHHHHHHhCC------CCCChhhHHHHHHHHHccCChhhHHHHHHHHHH-------HCCCCch
Q 040394 217 M--IAGYVQNDCAQEGLVLFNRMREGF------VEGNQITLGSLVTACAKLRALHQGKWLHGYILK-------IGIEINS 281 (691)
Q Consensus 217 l--i~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~-------~g~~~~~ 281 (691)
. ....+..|.+.+|+..+....... ..--..++..+...+...|-...+..+++.-++ .....+.
T Consensus 634 fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~ 713 (1238)
T KOG1127|consen 634 FKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDR 713 (1238)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhH
Confidence 2 223466788888888887764311 111122222222223333333333333332221 1111111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh--HHHHHHHH-HHhcCCc---h---hHHHHHHHhhHCCCCCcHHHHHH
Q 040394 282 HLVTALLDMYVKCGNIRDARSVFDELCSIDLV--SWTAMIVG-YTQSGYP---D---KALKLFTDKKWADFFPNHVTIAS 352 (691)
Q Consensus 282 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~-~~~~g~~---~---~a~~~~~~m~~~g~~p~~~t~~~ 352 (691)
..|-.+ ..|..+|-... |+.+ .+..++.. +-..+.. | -+.+.+-.-.. ...+..+|..
T Consensus 714 ~~Wi~a----------sdac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyN 780 (1238)
T KOG1127|consen 714 LQWIVA----------SDACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYN 780 (1238)
T ss_pred HHHHHH----------hHHHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHH
Confidence 111111 12223333322 2211 11111111 1111111 0 00000000000 0111222222
Q ss_pred HHHHHhc-------CCC-hhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhC
Q 040394 353 VLSASAQ-------LGN-LNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDD 424 (691)
Q Consensus 353 ll~~~~~-------~~~-~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 424 (691)
+...+.+ .+. ...|...+...++....+...++.|.-. ...|++.-+.--|-+-...
T Consensus 781 LGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-------------- 845 (1238)
T KOG1127|consen 781 LGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-------------- 845 (1238)
T ss_pred HhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc--------------
Confidence 2221111 111 1233444444444444444444444333 3334444443333322211
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc-----c---CC
Q 040394 425 NVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMR-----E---KN 496 (691)
Q Consensus 425 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~---~~ 496 (691)
.+....+|..+.-.+....+++-|...|....... |.+...+..........|+.-++..+|..-- + ++
T Consensus 846 -ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd--P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~ 922 (1238)
T KOG1127|consen 846 -EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD--PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKK 922 (1238)
T ss_pred -cccchhheeccceeEEecccHHHhhHHHHhhhhcC--chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccch
Confidence 23344556666666666667777777777666655 4555555444444455566666666655411 1 12
Q ss_pred HhHHHHHHHHHhcCCChHHHHHHHHHHHH---------CCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC
Q 040394 497 TVTWSAMIGGYGMQGDGGGSLALFSDMLN---------EEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS 567 (691)
Q Consensus 497 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~---------~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~ 567 (691)
..-|-....-...+|+.++-+...+.+-. .|.+-+...|.+......+.+.+..|.+...+...-...+.+
T Consensus 923 f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d 1002 (1238)
T KOG1127|consen 923 FQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLD 1002 (1238)
T ss_pred hhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22233333333444444433322222211 122333345555555555555555555554443322223333
Q ss_pred hhHHH----HHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch---hHHHH
Q 040394 568 MKHYV----CMVDLLARAGRLEEALEFMENMPIEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKAC---YYVLV 640 (691)
Q Consensus 568 ~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l 640 (691)
...|+ ...+.++..|.++.|..-+......-+..+-..-+.. .-.|+++++.+.|++++.+..++.. ....+
T Consensus 1003 ~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kv 1081 (1238)
T KOG1127|consen 1003 ESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKV 1081 (1238)
T ss_pred hhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHH
Confidence 33444 2334455666666665555544323333322222222 3456777777777777775444333 23334
Q ss_pred HHHHHhCCCcHHHHHHHHHH
Q 040394 641 SNLYASDGRWIRVNQVRELM 660 (691)
Q Consensus 641 ~~~~~~~g~~~~A~~~~~~~ 660 (691)
+.+...++.-+.|...+=+.
T Consensus 1082 a~~~g~~~~k~~A~~lLfe~ 1101 (1238)
T KOG1127|consen 1082 AVCMGLARQKNDAQFLLFEV 1101 (1238)
T ss_pred HHHHhhcccchHHHHHHHHH
Confidence 44445555666665554333
No 76
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.18 E-value=7.2e-10 Score=100.62 Aligned_cols=229 Identities=10% Similarity=0.073 Sum_probs=155.4
Q ss_pred HHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC
Q 040394 385 NALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSS 464 (691)
Q Consensus 385 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 464 (691)
+.+..+|.+.|.+.+|.+.++.-.+. .|.+.||..|-++|.+..+++.|..++.+..+.- |.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q----------------~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f--P~ 288 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ----------------FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF--PF 288 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc----------------CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC--Cc
Confidence 67788888889999998888876643 5777788888888888888888888888877765 66
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040394 465 NVYVGTALLNFYAKCGDAQSARMVFDAMREK---NTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSA 541 (691)
Q Consensus 465 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 541 (691)
+..........+...++.++|.++++...+. ++.....+..+|.-.++++.|+..++++.+.|+ -+...|+.+--+
T Consensus 289 ~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLC 367 (478)
T KOG1129|consen 289 DVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLC 367 (478)
T ss_pred hhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHH
Confidence 6666667777788888888888888877652 555555666677777888888888888888774 355566666666
Q ss_pred hcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040394 542 CSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENMPIEPDVSLFGAFLHGCGLYSRFDLGEV 621 (691)
Q Consensus 542 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 621 (691)
|...+++|-++.-|++.... .-.|+ +|- ..|..+.......||+..|.+
T Consensus 368 C~yaqQ~D~~L~sf~RAlst-at~~~------------------~aa------------DvWYNlg~vaV~iGD~nlA~r 416 (478)
T KOG1129|consen 368 CLYAQQIDLVLPSFQRALST-ATQPG------------------QAA------------DVWYNLGFVAVTIGDFNLAKR 416 (478)
T ss_pred HHhhcchhhhHHHHHHHHhh-ccCcc------------------hhh------------hhhhccceeEEeccchHHHHH
Confidence 66677777766666654211 11222 111 233334444445566666666
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhC
Q 040394 622 MIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQR 663 (691)
Q Consensus 622 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 663 (691)
.|+-++.-+|++...+..|+.+-.+.|+.++|..+++.....
T Consensus 417 cfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 417 CFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 666666666666666666666666666666666666655543
No 77
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.18 E-value=2.3e-07 Score=95.26 Aligned_cols=302 Identities=13% Similarity=0.075 Sum_probs=147.2
Q ss_pred HHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhccCCCCh--h-hHHHHHHHHHhC-----C
Q 040394 154 KACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDETLDKNV--V-SWTSMIAGYVQN-----D 225 (691)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~-~~~~li~~~~~~-----g 225 (691)
..+...|+.++|.+.++.-...-++...........+.+.|+.++|..++..+.+.|+ . -|..+..+..-. .
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccc
Confidence 3445566777777666654444444555666666666666666666666666654322 2 233333333211 2
Q ss_pred ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCh-hhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 040394 226 CAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRAL-HQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNIRDARSVF 304 (691)
Q Consensus 226 ~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 304 (691)
+.+...++|+++...- |.......+.-.+.....+ ..+..++..+...|+++ +++.|-..|....+.+-..+++
T Consensus 92 ~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 92 DVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHH
Confidence 3455555666654432 3332222222222221122 23334444445555432 2333333333222222222222
Q ss_pred HhcCCCChhHHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCcH--HHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCchh
Q 040394 305 DELCSIDLVSWTAMIVGYTQSGYPDKALKLFTDKKWADFFPNH--VTIASVLSASAQLGNLNMGRMVHSLGIRLGLEDYT 382 (691)
Q Consensus 305 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 382 (691)
.... ..+...+.+...- ....-.|+. .++..+...+...|++++|..+.+.++.+.|..+.
T Consensus 167 ~~~~-----------~~l~~~~~~~~~~------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~e 229 (517)
T PF12569_consen 167 EEYV-----------NSLESNGSFSNGD------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVE 229 (517)
T ss_pred HHHH-----------HhhcccCCCCCcc------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH
Confidence 2210 0000000000000 000012222 23334444566666666666666666666666666
Q ss_pred HHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCC
Q 040394 383 VINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLL 462 (691)
Q Consensus 383 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 462 (691)
.|..-.+.|-+.|++.+|.+.++....-| .-|...-+.....+.+.|++++|..++....+.+.
T Consensus 230 ly~~KarilKh~G~~~~Aa~~~~~Ar~LD---------------~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~- 293 (517)
T PF12569_consen 230 LYMTKARILKHAGDLKEAAEAMDEARELD---------------LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV- 293 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCC---------------hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC-
Confidence 66677777777777777777666665543 23444445555566666777777777666665553
Q ss_pred CCc--------hhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 040394 463 SSN--------VYVGTALLNFYAKCGDAQSARMVFDAMR 493 (691)
Q Consensus 463 ~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 493 (691)
.+. .........+|.+.|++..|++.|..+.
T Consensus 294 ~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 294 DPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 221 1222445667777787777777776655
No 78
>PRK12370 invasion protein regulator; Provisional
Probab=99.16 E-value=6e-09 Score=110.88 Aligned_cols=211 Identities=12% Similarity=0.001 Sum_probs=168.0
Q ss_pred CcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHh---------cCCHHHHHHHHHhccc--C-CHhHHHHHHHHHhcCC
Q 040394 444 GAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAK---------CGDAQSARMVFDAMRE--K-NTVTWSAMIGGYGMQG 511 (691)
Q Consensus 444 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~ 511 (691)
++.+.|...+++..+.. |.+...+..+..+|.. .+++++|...+++..+ | +...|..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Confidence 45689999999999887 6777777777665542 3458899999998875 3 6778888888999999
Q ss_pred ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCCh-hHHHHHHHHHHhcCChHHHHH
Q 040394 512 DGGGSLALFSDMLNEEVQPN-EVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSM-KHYVCMVDLLARAGRLEEALE 589 (691)
Q Consensus 512 ~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~ 589 (691)
++++|...+++..+. .|+ ...+..+..++...|++++|...+++.. .+.|+. ..+..++..+...|++++|++
T Consensus 353 ~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al---~l~P~~~~~~~~~~~~~~~~g~~eeA~~ 427 (553)
T PRK12370 353 EYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECL---KLDPTRAAAGITKLWITYYHTGIDDAIR 427 (553)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCChhhHHHHHHHHHhccCHHHHHH
Confidence 999999999999985 455 4567777788999999999999999774 456663 233344556777899999999
Q ss_pred HHHhC--CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhC
Q 040394 590 FMENM--PIEPD-VSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQR 663 (691)
Q Consensus 590 ~~~~~--~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 663 (691)
.+++. ...|+ ...+..+..++...|+.++|...++++....|++......++..|...| ++|...++++.+.
T Consensus 428 ~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 428 LGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 99887 23454 4456777788889999999999999998889988888888888888888 4888888887663
No 79
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.16 E-value=1.6e-08 Score=95.71 Aligned_cols=199 Identities=12% Similarity=0.110 Sum_probs=164.2
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHhHHHHHH
Q 040394 428 PDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE---KNTVTWSAMI 504 (691)
Q Consensus 428 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 504 (691)
.....+..+...+...|+++.|...+++..+.. |.+...+..+...+...|++++|.+.+++..+ .+...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 345677888889999999999999999998876 67788888999999999999999999998764 3566788889
Q ss_pred HHHhcCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcC
Q 040394 505 GGYGMQGDGGGSLALFSDMLNEEVQP-NEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAG 582 (691)
Q Consensus 505 ~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g 582 (691)
..+...|++++|.+.+++..+....| ....+..+..++...|++++|.+.+++... ..|+ ...+..+...+...|
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ---IDPQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCChHHHHHHHHHHHHcC
Confidence 99999999999999999998753223 334566677788999999999999998753 3444 667888999999999
Q ss_pred ChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 040394 583 RLEEALEFMENM-PI-EPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHP 631 (691)
Q Consensus 583 ~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 631 (691)
++++|.+.+++. .. +.+...+..+...+...|+.++|..+.+.+.+..|
T Consensus 184 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 184 QYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 999999999987 32 34556677777888899999999999988776654
No 80
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=5.7e-06 Score=82.11 Aligned_cols=438 Identities=11% Similarity=0.060 Sum_probs=202.4
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCC-CChhHHHHHHHHhH--hcCC
Q 040394 119 RWYFLNDLYKDIVEFYKCMRKRLKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGG-PDSFVLTGLVDMYA--KCRD 195 (691)
Q Consensus 119 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~--~~g~ 195 (691)
+.+...+++++|.....++...+ +-+...+..-+-++.+.+++++|..+.+. .+. .....+ .+=.+|| +.+.
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~~~~~~~~-~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGALLVINSF-FFEKAYCEYRLNK 94 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cchhhhcchh-hHHHHHHHHHccc
Confidence 33445556666666666665543 33444555555555666666666543332 111 100011 0222333 4566
Q ss_pred hHHHHHHHhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHccCChhhHHHHHHHHHH
Q 040394 196 IGSSRQVFDETLDKNVVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEG-NQITLGSLVTACAKLRALHQGKWLHGYILK 274 (691)
Q Consensus 196 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~~~~ 274 (691)
.++|+..++-..+-+..+...-...+-+.|++++|+++|+.+.+++..- +...-..++.+-.. ..+ +.+..
T Consensus 95 ~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~----~~~q~ 166 (652)
T KOG2376|consen 95 LDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQV----QLLQS 166 (652)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhH----HHHHh
Confidence 6666666664333333344444555666666777777776665543321 11111111111000 000 01222
Q ss_pred HCCCCchHHHHH---HHHHHHhcCCHHHHHHHHHhc--------CCCCh-----h-----HHHHHHHHHHhcCCchhHHH
Q 040394 275 IGIEINSHLVTA---LLDMYVKCGNIRDARSVFDEL--------CSIDL-----V-----SWTAMIVGYTQSGYPDKALK 333 (691)
Q Consensus 275 ~g~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~~--------~~~~~-----~-----~~~~li~~~~~~g~~~~a~~ 333 (691)
....| ..+|.. ....+...|++.+|+++++.. ...|. . .--.|...+...|+.++|..
T Consensus 167 v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~ 245 (652)
T KOG2376|consen 167 VPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS 245 (652)
T ss_pred ccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 22222 122222 233455667777777776654 11111 0 12223445667888888888
Q ss_pred HHHHhhHCCCCCcHHHHHHH---HHHHhcCCChhhH--HHHHHHH-----------HHhCCC-chhHHHHHHHHhHhcCC
Q 040394 334 LFTDKKWADFFPNHVTIASV---LSASAQLGNLNMG--RMVHSLG-----------IRLGLE-DYTVINALVDMYAKCHV 396 (691)
Q Consensus 334 ~~~~m~~~g~~p~~~t~~~l---l~~~~~~~~~~~a--~~~~~~~-----------~~~~~~-~~~~~~~l~~~~~~~g~ 396 (691)
++...+... .+|....... |.+.....++... ...++.. ....-. ....-+.++.+| .+.
T Consensus 246 iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk 322 (652)
T KOG2376|consen 246 IYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNK 322 (652)
T ss_pred HHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhh
Confidence 888877763 2333222222 2222222222221 1111110 000000 111123333333 334
Q ss_pred hHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHh--ccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHH
Q 040394 397 IADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACA--SLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLN 474 (691)
Q Consensus 397 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 474 (691)
-+.+.++....+. ..|.. .+..++..+. +......+..++....+... .....+....+.
T Consensus 323 ~~q~r~~~a~lp~----------------~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p-~~s~~v~L~~aQ 384 (652)
T KOG2376|consen 323 MDQVRELSASLPG----------------MSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHP-EKSKVVLLLRAQ 384 (652)
T ss_pred HHHHHHHHHhCCc----------------cCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCC-chhHHHHHHHHH
Confidence 4555555555542 23333 3334444332 22246667777776666552 233455566677
Q ss_pred HHHhcCCHHHHHHHHHhcc--------c--CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHC--CCCCCHHHHHHHH---
Q 040394 475 FYAKCGDAQSARMVFDAMR--------E--KNTVTWSAMIGGYGMQGDGGGSLALFSDMLNE--EVQPNEVIFTTIL--- 539 (691)
Q Consensus 475 ~~~~~g~~~~A~~~~~~~~--------~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~~~~~~~ll--- 539 (691)
.....|+++.|.+++.... + ..+.+-..++..+.+.++.+.|..++.+...- .-.+......+++
T Consensus 385 l~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~a 464 (652)
T KOG2376|consen 385 LKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREA 464 (652)
T ss_pred HHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHH
Confidence 7788888888888887322 1 12233344555555666655566555554431 0112222222222
Q ss_pred -HHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 040394 540 -SACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENM 594 (691)
Q Consensus 540 -~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 594 (691)
..-.+.|+.++|..+++++.+. ..+|..+...++.+|++. +++.|..+-+.+
T Consensus 465 a~f~lr~G~~~ea~s~leel~k~--n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 465 AEFKLRHGNEEEASSLLEELVKF--NPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred hHHHHhcCchHHHHHHHHHHHHh--CCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 2223456666666666666432 234456666666666554 556666655555
No 81
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=5.2e-07 Score=85.17 Aligned_cols=301 Identities=12% Similarity=-0.019 Sum_probs=212.9
Q ss_pred CCCcHHHHHHHHHHHh--cCCChhhHHHHHHHHHH-hCCC-chhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHH
Q 040394 343 FFPNHVTIASVLSASA--QLGNLNMGRMVHSLGIR-LGLE-DYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSI 418 (691)
Q Consensus 343 ~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l 418 (691)
+.|...+....+.+++ -.++-..+...+-.+.. .-.+ +......+.+++...|+.++|...|++....|
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d------- 262 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN------- 262 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-------
Confidence 4444444444444333 33444444444333332 3333 89999999999999999999999999987653
Q ss_pred HHhhhCCCCCCHHH-HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCC-
Q 040394 419 ISGLDDNVSPDAVT-LVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMREKN- 496 (691)
Q Consensus 419 i~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 496 (691)
|+..+ ...-.-.+...|+.+....+...+.... ..+...+-.-.......++++.|+.+-++..+.+
T Consensus 263 ---------py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~--~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~ 331 (564)
T KOG1174|consen 263 ---------PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV--KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP 331 (564)
T ss_pred ---------hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh--hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc
Confidence 33221 1111122356677777777777666544 2344444444555666788999999998877643
Q ss_pred --HhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHH
Q 040394 497 --TVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQP-NEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVC 573 (691)
Q Consensus 497 --~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ 573 (691)
+..|-.-...+...|++++|.-.|+..+.. .| +...|.-++.+|...|.+.+|...-+...+. +.-+..+...
T Consensus 332 r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL 407 (564)
T KOG1174|consen 332 RNHEALILKGRLLIALERHTQAVIAFRTAQML--APYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTL 407 (564)
T ss_pred ccchHHHhccHHHHhccchHHHHHHHHHHHhc--chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhh
Confidence 444444456788899999999999998874 54 6689999999999999999998877765443 2233444444
Q ss_pred HH-HHHH-hcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCC
Q 040394 574 MV-DLLA-RAGRLEEALEFMENM-PIEPDV-SLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGR 649 (691)
Q Consensus 574 li-~~~~-~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 649 (691)
+. .++. ...--++|.+++++. ...|+- ...+.+...|...|..+.++.++++.+...|+ ...+..|+.++...+.
T Consensus 408 ~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne 486 (564)
T KOG1174|consen 408 FGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNE 486 (564)
T ss_pred hcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhh
Confidence 42 2333 223458899999987 788876 46777888889999999999999999999999 8899999999999999
Q ss_pred cHHHHHHHHHHHhCCCc
Q 040394 650 WIRVNQVRELMKQRGLS 666 (691)
Q Consensus 650 ~~~A~~~~~~~~~~g~~ 666 (691)
+.+|.+.|...+..+.+
T Consensus 487 ~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 487 PQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHHHHHHhcCcc
Confidence 99999999888776553
No 82
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.13 E-value=4.1e-07 Score=92.83 Aligned_cols=272 Identities=13% Similarity=0.067 Sum_probs=167.6
Q ss_pred hhhhhhhhhcccCCCccccccccccCCCCCCCCCChHHHHhhhcC-----CCc-hhHHHHHhhc-------cCchhHH--
Q 040394 2 KLISLLQRHVSRTKKPKLQLRFFSYTNQQTPTQHELDQTFASFHS-----LPS-IPCLNLLGLC-------KSTGSLK-- 66 (691)
Q Consensus 2 ~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~~~~~~~~a~~~~~~-----~~~-~~~~~ll~~~-------~~~~~a~-- 66 (691)
|.++++..+-+..++|+.+++.|....-.+-.....+.+. +++. |.+ ..-..++... ...+.+.
T Consensus 228 ~~~~~~~~Lw~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~-l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ils 306 (799)
T KOG4162|consen 228 RAVELLPILWKKLSGPKEAIKSYRRALLRSWSLDPLTKAR-LYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILS 306 (799)
T ss_pred HHHHHhHHHhcCCCCchHHHHhhhHHhhcccccchhHHHH-HhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHH
Confidence 4456667777788888887777765544333222222221 2222 111 0011111111 2222222
Q ss_pred --HHHHHHHHhCCCCch-hhhHHHHHHhcCCChHHHHHHhccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 040394 67 --AFHALLIVDGLTNDK-CNTKLVSMYGSFGHVKYARSVFDSMPN---PDFYSFQVMIRWYFLNDLYKDIVEFYKCMRKR 140 (691)
Q Consensus 67 --~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 140 (691)
.....+....+.+++ +|..+.-++.+.|+++.+-+.|++... .....|+.+...|...|....|+.+++.-...
T Consensus 307 lm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~ 386 (799)
T KOG4162|consen 307 LMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKK 386 (799)
T ss_pred HHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhccc
Confidence 223334445577788 999999999999999999999998654 44567999999999999999999999887665
Q ss_pred CCCC-CcchHHHHHHHHc-ccCChhHHHHHHHHHHHh--CC--C-ChhHHHHHHHHhHhc-----------CChHHHHHH
Q 040394 141 LKEH-DNFVFSKVLKACC-ELRDIDEGMKVHCEIVKV--GG--P-DSFVLTGLVDMYAKC-----------RDIGSSRQV 202 (691)
Q Consensus 141 ~~~~-~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~--~~--~-~~~~~~~l~~~~~~~-----------g~~~~A~~~ 202 (691)
...| +...+...-+.|. +.+..+++...-...+.. +. . .+..|..+.-+|... ....++.+.
T Consensus 387 ~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqa 466 (799)
T KOG4162|consen 387 SEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQA 466 (799)
T ss_pred ccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHH
Confidence 3334 3444444445454 456777777766666662 21 1 555666666665532 223445555
Q ss_pred HhccCCC---ChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHH
Q 040394 203 FDETLDK---NVVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILK 274 (691)
Q Consensus 203 ~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~ 274 (691)
+++..+. |..+---+.--|+..++.+.|.+..++..+-+-.-+...+..+...+...+++.+|..+.+...+
T Consensus 467 le~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 467 LEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 6655332 22222223334566778888888888888776666777888888888888888888888776654
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.13 E-value=5.8e-09 Score=90.62 Aligned_cols=161 Identities=19% Similarity=0.176 Sum_probs=117.4
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHH
Q 040394 500 WSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNE-VIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDL 577 (691)
Q Consensus 500 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~ 577 (691)
...|..+|.+.|+...|..-+++.++. .|+. .++..+...|.+.|..+.|.+.|+... .+.|+ ..+.|.....
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHH
Confidence 344566777777777777777777774 4443 566667777777788888887777543 45666 6677777778
Q ss_pred HHhcCChHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHH
Q 040394 578 LARAGRLEEALEFMENMPIEP----DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRV 653 (691)
Q Consensus 578 ~~~~g~~~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 653 (691)
+|..|++++|...|++.-..| -..+|..++.+..+.|+.+.|+..+++.++.+|+++.....++....+.|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 888888888888887772222 2346777777777888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhCCC
Q 040394 654 NQVRELMKQRGL 665 (691)
Q Consensus 654 ~~~~~~~~~~g~ 665 (691)
.-+++.....+.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 888877776655
No 84
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.11 E-value=4.8e-06 Score=85.44 Aligned_cols=337 Identities=12% Similarity=0.058 Sum_probs=191.8
Q ss_pred hhhHHH--HHHhcCCChHHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHc-C--------CCCCcchHH
Q 040394 82 CNTKLV--SMYGSFGHVKYARSVFDSMPNPDFYSFQVMIRWYFLNDLYKDIVEFYKCMRKR-L--------KEHDNFVFS 150 (691)
Q Consensus 82 ~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~--------~~~~~~~~~ 150 (691)
+...++ +.|.--|+.+.|.+..+-++ +...|..|.+.+.+.++.+-|.-.+..|... | -.|+ .+=.
T Consensus 728 TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~ea 804 (1416)
T KOG3617|consen 728 TRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEA 804 (1416)
T ss_pred HHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhh
Confidence 344444 45667788898887766554 4467899999998888888777666655321 1 1122 2222
Q ss_pred HHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhccCCC-ChhhHHHHHHHHHhCCChhH
Q 040394 151 KVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDETLDK-NVVSWTSMIAGYVQNDCAQE 229 (691)
Q Consensus 151 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~ 229 (691)
.+.-.....|.+++|+.+|++-++. ..|=..|-..|.+++|.++-+.-.+- =..||..-...+-..++.+.
T Consensus 805 kvAvLAieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~ 876 (1416)
T KOG3617|consen 805 KVAVLAIELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEA 876 (1416)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHH
Confidence 2223334678999999999988874 45556777889999999988764332 23466666777777888899
Q ss_pred HHHHHHHHH----------hCCC---------CCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCCCchHHHHHHHHH
Q 040394 230 GLVLFNRMR----------EGFV---------EGNQITLGSLVTACAKLRALHQGKWLHGYILKIGIEINSHLVTALLDM 290 (691)
Q Consensus 230 A~~~~~~m~----------~~~~---------~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 290 (691)
|++.|++.. ...+ +.|...|..--.-+-..|+.+.|..+|.... -|-+++..
T Consensus 877 AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~---------D~fs~VrI 947 (1416)
T KOG3617|consen 877 ALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK---------DYFSMVRI 947 (1416)
T ss_pred HHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh---------hhhhheee
Confidence 988887632 1110 1122222222233334455555555554433 23456666
Q ss_pred HHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCcHHHHHHHHHHHhcCCChhhHHHHH
Q 040394 291 YVKCGNIRDARSVFDELCSIDLVSWTAMIVGYTQSGYPDKALKLFTDKKWADFFPNHVTIASVLSASAQLGNLNMGRMVH 370 (691)
Q Consensus 291 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 370 (691)
.|-.|+.++|-++-++ ..|..+...|.+.|-..|++.+|..+|.+.. +|...|+.|-..+--++-.
T Consensus 948 ~C~qGk~~kAa~iA~e--sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L~--- 1013 (1416)
T KOG3617|consen 948 KCIQGKTDKAARIAEE--SGDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRLA--- 1013 (1416)
T ss_pred EeeccCchHHHHHHHh--cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHHH---
Confidence 6777788887777665 3566677778888888999999998887643 4455555444333222211
Q ss_pred HHHHHhCCCc-----------hhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHH
Q 040394 371 SLGIRLGLED-----------YTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISA 439 (691)
Q Consensus 371 ~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~ 439 (691)
....-.+..+ ..-....+..|-++|.+.+|+++-=+-.+. .+...+-..+ .-..|+...+....-
T Consensus 1014 nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf--~aL~lIa~DL--d~~sDp~ll~RcadF 1089 (1416)
T KOG3617|consen 1014 NLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQF--SALDLIAKDL--DAGSDPKLLRRCADF 1089 (1416)
T ss_pred HHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhccc--HHHHHHHHhc--CCCCCHHHHHHHHHH
Confidence 1111111110 001133456677788887777654332221 0111111111 122344445555555
Q ss_pred HhccCcHHHHHHHHHHH
Q 040394 440 CASLGAVQVGSSLHAYS 456 (691)
Q Consensus 440 ~~~~~~~~~a~~~~~~~ 456 (691)
++...+++.|..++-..
T Consensus 1090 F~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1090 FENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred HHhHHHHHHHHHHHHHH
Confidence 55555666655555433
No 85
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.09 E-value=6.3e-09 Score=94.66 Aligned_cols=194 Identities=12% Similarity=0.117 Sum_probs=156.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccc--CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHh
Q 040394 466 VYVGTALLNFYAKCGDAQSARMVFDAMRE--KNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTT-ILSAC 542 (691)
Q Consensus 466 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~ 542 (691)
-.--+.+..+|.+.|.+.+|.+.|+.-.+ |-+.||-.|-.+|.+..++..|+.++.+-.+. .|-.+||.. +.+.+
T Consensus 223 wwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 223 WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHH
Confidence 33345678888899999999998887653 67778888999999999999999999988874 666666544 45577
Q ss_pred cccCCHHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHH
Q 040394 543 SHTGMVGEGWKCFYSMCRDFKFVP-SMKHYVCMVDLLARAGRLEEALEFMENM---PIEPDVSLFGAFLHGCGLYSRFDL 618 (691)
Q Consensus 543 ~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~ 618 (691)
...++.++|.++++...+. .| +++...++...|.-.++++-|+.+++++ | .-++..|..+.-+|.-.++++-
T Consensus 301 eam~~~~~a~~lYk~vlk~---~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKL---HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHhHHHHHHHHHHHHhc---CCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhh
Confidence 8889999999999977543 44 4677777888888999999999999987 4 3467788888889999999999
Q ss_pred HHHHHHHHHhcC--CCC-chhHHHHHHHHHhCCCcHHHHHHHHHHHhCCC
Q 040394 619 GEVMIKKMLELH--PDK-ACYYVLVSNLYASDGRWIRVNQVRELMKQRGL 665 (691)
Q Consensus 619 A~~~~~~~~~~~--p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 665 (691)
+...|++++... |+. ..+|+.++.+....|++..|.+-|+..+..+-
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~ 426 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA 426 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc
Confidence 999999999843 432 47899999999999999999999987776543
No 86
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.06 E-value=1.7e-07 Score=94.95 Aligned_cols=125 Identities=12% Similarity=0.086 Sum_probs=66.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHc-----CCC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC-----------
Q 040394 433 LVSVISACASLGAVQVGSSLHAYSTKQ-----GLL-SSNVYVGTALLNFYAKCGDAQSARMVFDAMREK----------- 495 (691)
Q Consensus 433 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------- 495 (691)
++.+...|+..++++.|..+++...+. |.. +....+++.|...|.+.|++++|.++++++.+.
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 344445555666666666665544321 110 134567777888888888888888887766531
Q ss_pred CHhHHHHHHHHHhcCCChHHHHHHHHHHHH----CCC-CCCH-HHHHHHHHHhcccCCHHHHHHHHHH
Q 040394 496 NTVTWSAMIGGYGMQGDGGGSLALFSDMLN----EEV-QPNE-VIFTTILSACSHTGMVGEGWKCFYS 557 (691)
Q Consensus 496 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~----~g~-~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~ 557 (691)
.-..++.|...|.+.+++.+|..+|.+... .|. .|+. .+|..|...|...|+++.|.++.+.
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~ 475 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEK 475 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 122455566666666666666666655332 111 1111 3344444444555555555444443
No 87
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.05 E-value=3.2e-08 Score=96.21 Aligned_cols=91 Identities=11% Similarity=-0.039 Sum_probs=46.2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CHhHHHHHHHHHhc
Q 040394 433 LVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE--K-NTVTWSAMIGGYGM 509 (691)
Q Consensus 433 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~ 509 (691)
|..+...+...|+.+.|...|+...+.. |.++..|+.+...+...|++++|...|+...+ | +...|..+...+..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR--PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4444444455555555555555555544 44455555555555555555555555555432 2 23444445555555
Q ss_pred CCChHHHHHHHHHHHH
Q 040394 510 QGDGGGSLALFSDMLN 525 (691)
Q Consensus 510 ~~~~~~A~~~~~~m~~ 525 (691)
.|++++|++.+++..+
T Consensus 145 ~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 145 GGRYELAQDDLLAFYQ 160 (296)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5555555555555554
No 88
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.04 E-value=6.3e-07 Score=91.64 Aligned_cols=252 Identities=12% Similarity=0.031 Sum_probs=134.2
Q ss_pred HHHHHHhcCCchhHHHHHHHhhHCCCCCcHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCCh
Q 040394 318 MIVGYTQSGYPDKALKLFTDKKWADFFPNHVTIASVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVI 397 (691)
Q Consensus 318 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 397 (691)
...-+-..|+.|.|+.+|...++ |-++++..|-+|+.++|.++-++- .+..+...+.+.|-..|++
T Consensus 918 WgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es-----gd~AAcYhlaR~YEn~g~v 983 (1416)
T KOG3617|consen 918 WGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES-----GDKAACYHLARMYENDGDV 983 (1416)
T ss_pred HHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc-----ccHHHHHHHHHHhhhhHHH
Confidence 33334456777777777765443 455666667777777776654431 1445556677888888888
Q ss_pred HHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHcCCCCCchhHHHHHHHH
Q 040394 398 ADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASL--GAVQVGSSLHAYSTKQGLLSSNVYVGTALLNF 475 (691)
Q Consensus 398 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 475 (691)
.+|...|.+... ++..|.....+-- -..|...+... .+.-.|-++|++. | .....-+..
T Consensus 984 ~~Av~FfTrAqa-----fsnAIRlcKEnd~-----~d~L~nlal~s~~~d~v~aArYyEe~---g------~~~~~AVmL 1044 (1416)
T KOG3617|consen 984 VKAVKFFTRAQA-----FSNAIRLCKENDM-----KDRLANLALMSGGSDLVSAARYYEEL---G------GYAHKAVML 1044 (1416)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHhcCH-----HHHHHHHHhhcCchhHHHHHHHHHHc---c------hhhhHHHHH
Confidence 888888876541 1111111111000 00111111111 1222333333322 1 111223445
Q ss_pred HHhcCCHHHHHHHHHhccc--------------CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040394 476 YAKCGDAQSARMVFDAMRE--------------KNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSA 541 (691)
Q Consensus 476 ~~~~g~~~~A~~~~~~~~~--------------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 541 (691)
|-+.|.+.+|+++-=+-.+ .|+...+.-..-++.+.++++|..++-...+ |.-.++.
T Consensus 1045 YHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~Alql 1115 (1416)
T KOG3617|consen 1045 YHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQL 1115 (1416)
T ss_pred HHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHH
Confidence 7777777777665432222 2566666666777778888888877766554 3333444
Q ss_pred hcccCCHHHHHHHHHHchhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 040394 542 CSHTGMVGEGWKCFYSMCRDFKFVPS----MKHYVCMVDLLARAGRLEEALEFMENMPIEPDVSLFGAFLHGCGLYSRFD 617 (691)
Q Consensus 542 ~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 617 (691)
|. ..++.-..++-+.|.-...-.|+ ......+...|.++|.+..|-+-|...|.+ ...++++.++||.+
T Consensus 1116 C~-~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK------l~AMraLLKSGdt~ 1188 (1416)
T KOG3617|consen 1116 CK-NRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK------LSAMRALLKSGDTQ 1188 (1416)
T ss_pred Hh-cCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH------HHHHHHHHhcCCcc
Confidence 33 33444444555555333223344 345667778888999988888777777533 12344455555544
Q ss_pred H
Q 040394 618 L 618 (691)
Q Consensus 618 ~ 618 (691)
+
T Consensus 1189 K 1189 (1416)
T KOG3617|consen 1189 K 1189 (1416)
T ss_pred e
Confidence 3
No 89
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.03 E-value=1.4e-07 Score=82.25 Aligned_cols=200 Identities=11% Similarity=0.059 Sum_probs=161.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHhHHHHHHHHHh
Q 040394 432 TLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE---KNTVTWSAMIGGYG 508 (691)
Q Consensus 432 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 508 (691)
+...|.-.|...|+...|..-+++..+++ |....++..+...|.+.|+.+.|.+-|+...+ .+-...|....-+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 45667778889999999999999999988 78888899999999999999999999988764 35667888888889
Q ss_pred cCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHH
Q 040394 509 MQGDGGGSLALFSDMLNEEVQPN-EVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEE 586 (691)
Q Consensus 509 ~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~ 586 (691)
..|++++|...|++....-.-|. ..||..+.-+..+.|+.+.|...|++.. ...|+ ..+.-.+.....+.|++..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL---~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRAL---ELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHH---HhCcCCChHHHHHHHHHHhcccchH
Confidence 99999999999998887433332 3577777777788999999999998553 45666 6677778888889999999
Q ss_pred HHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh
Q 040394 587 ALEFMENM--PIEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACY 636 (691)
Q Consensus 587 A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 636 (691)
|..+++.. +..++..+....+..-...||.+.+...=.++.+..|.+..+
T Consensus 192 Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 192 ARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 98888887 445777777777777778899988888888888888886544
No 90
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.02 E-value=2e-07 Score=95.78 Aligned_cols=258 Identities=12% Similarity=0.059 Sum_probs=187.7
Q ss_pred HHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHH-HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCc
Q 040394 387 LVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVT-LVSVISACASLGAVQVGSSLHAYSTKQGLLSSN 465 (691)
Q Consensus 387 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 465 (691)
....+...|++++|++.++.-.. ..+|..+ .......+.+.|+.++|..++..+.+.+ |.+
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~----------------~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn 71 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEK----------------QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDN 71 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhh----------------hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCc
Confidence 34567888999999999988654 3455554 4556678889999999999999999999 788
Q ss_pred hhHHHHHHHHHHhcC-----CHHHHHHHHHhcccC--CHhHHHHHHHHHhcCCCh-HHHHHHHHHHHHCCCCCCHHHHHH
Q 040394 466 VYVGTALLNFYAKCG-----DAQSARMVFDAMREK--NTVTWSAMIGGYGMQGDG-GGSLALFSDMLNEEVQPNEVIFTT 537 (691)
Q Consensus 466 ~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~-~~A~~~~~~m~~~g~~p~~~~~~~ 537 (691)
...|..+..+..-.. ..+....+++++.+. .......+.-.+.....+ ..+..++..+...|+++ +|+.
T Consensus 72 ~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~ 148 (517)
T PF12569_consen 72 YDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSN 148 (517)
T ss_pred HHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHH
Confidence 888888888874333 567778888877652 222222222222222223 34667778888888665 3444
Q ss_pred HHHHhcccCCHHHHHHHHHHchhhcC-------------CCCChh--HHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-H
Q 040394 538 ILSACSHTGMVGEGWKCFYSMCRDFK-------------FVPSMK--HYVCMVDLLARAGRLEEALEFMENM-PIEPD-V 600 (691)
Q Consensus 538 ll~~~~~~g~~~~A~~~~~~m~~~~~-------------~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~ 600 (691)
+-..|....+.+-..+++........ -.|... ++..+...|-..|++++|++++++. ..+|+ +
T Consensus 149 lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ 228 (517)
T PF12569_consen 149 LKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLV 228 (517)
T ss_pred HHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcH
Confidence 44455555555555555555433211 123332 3455667788999999999999987 66776 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCCC
Q 040394 601 SLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRGL 665 (691)
Q Consensus 601 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 665 (691)
..|..-...+.+.|++++|...++.+.++++.|-.+....+..+.+.|+.++|.+++....+.+.
T Consensus 229 ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 229 ELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 57888888899999999999999999999999999999999999999999999999998887765
No 91
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=1.3e-06 Score=78.88 Aligned_cols=235 Identities=13% Similarity=0.014 Sum_probs=126.5
Q ss_pred cCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHhcCCchhHHHH
Q 040394 259 LRALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNIRDARSVFDELCS----IDLVSWTAMIVGYTQSGYPDKALKL 334 (691)
Q Consensus 259 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~ 334 (691)
.+++..+..+.++....| +..+.+.......+.|+.+.|.+-|+...+ .....||.-+. +.+.|+++.|++.
T Consensus 125 e~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~ 200 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKH 200 (459)
T ss_pred cccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHH
Confidence 344444444444432211 223333333444566666666666665522 23445654443 4456777888888
Q ss_pred HHHhhHCCCCCcHHHH----HHHHHHHhcCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCC
Q 040394 335 FTDKKWADFFPNHVTI----ASVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEK 410 (691)
Q Consensus 335 ~~~m~~~g~~p~~~t~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 410 (691)
..+..++|++-.+..= ...+.+ ...|+. ..+.... -...+|.-...+.+.|+.+.|.+.+-.|+.+
T Consensus 201 iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt---~~lh~Sa------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPR 270 (459)
T KOG4340|consen 201 ISEIIERGIRQHPELGIGMTTEGIDV-RSVGNT---LVLHQSA------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPR 270 (459)
T ss_pred HHHHHHhhhhcCCccCccceeccCch-hcccch---HHHHHHH------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCc
Confidence 8877777654221100 000000 000000 0000000 1234566667788899999999999999877
Q ss_pred CchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 040394 411 DVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFD 490 (691)
Q Consensus 411 ~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 490 (691)
. ....|++|...+.-.- ..+++-...+-++.+.... |-...++..++-.||+..-++.|-.++.
T Consensus 271 a-------------E~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n--PfP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 271 A-------------EEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN--PFPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred c-------------cccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC--CCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 4 3456667765543221 2234444455555566665 6677888889999999999999988887
Q ss_pred hcccC-----CHhHHHHHHHHHh-cCCChHHHHHHHHHHH
Q 040394 491 AMREK-----NTVTWSAMIGGYG-MQGDGGGSLALFSDML 524 (691)
Q Consensus 491 ~~~~~-----~~~~~~~li~~~~-~~~~~~~A~~~~~~m~ 524 (691)
+-... +...|+.| .++. ..-.++++++-++.+.
T Consensus 335 En~~lTyk~L~~Yly~LL-daLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 335 ENAHLTYKFLTPYLYDLL-DALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred hCcchhHHHhhHHHHHHH-HHHHhCCCCHHHHHHHHHHHH
Confidence 65542 33334333 3332 2345566655554443
No 92
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.00 E-value=2.8e-06 Score=89.19 Aligned_cols=341 Identities=9% Similarity=-0.008 Sum_probs=193.4
Q ss_pred HHhhccCchhHHHHHHHHHHhCCCCchhhhHHHHHHhcCCChHHHHHHhccCCCCCc-----chHHHHHHHHHhCCChhH
Q 040394 55 LLGLCKSTGSLKAFHALLIVDGLTNDKCNTKLVSMYGSFGHVKYARSVFDSMPNPDF-----YSFQVMIRWYFLNDLYKD 129 (691)
Q Consensus 55 ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~ll~~~~~~~~~~~ 129 (691)
.++..-+...|...++...+.+...-..+....+.|++..+++.|..+.-...+.+. ..|....-.|.+.++..+
T Consensus 501 iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~ 580 (1238)
T KOG1127|consen 501 IYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHG 580 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhh
Confidence 333334555677777776665544444788899999999999999998554433221 234444445678899999
Q ss_pred HHHHHHHHHHcCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhccCCC
Q 040394 130 IVEFYKCMRKRLKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDETLDK 209 (691)
Q Consensus 130 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 209 (691)
|+.-|+...+.. +-|...|..+..+|...|++..|.++|.......|.+....--.....|..|.+.+|...+..+...
T Consensus 581 aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 581 AVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYA 659 (1238)
T ss_pred HHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 999999888763 4477889999999999999999999999998888777777777777788999999999998876331
Q ss_pred ----------ChhhHHHHHHHHHhCCChhHHHHHHHHHHhC-------CCCCChhhHHHHHHHHHccCChhhHHHHHHHH
Q 040394 210 ----------NVVSWTSMIAGYVQNDCAQEGLVLFNRMREG-------FVEGNQITLGSLVTACAKLRALHQGKWLHGYI 272 (691)
Q Consensus 210 ----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~ 272 (691)
-..++-.+...+.-.|-..+|.+.++.-.+. ....+...+..+- .|..+|-+.
T Consensus 660 ~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~as----------dac~~f~q~ 729 (1238)
T KOG1127|consen 660 FSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVAS----------DACYIFSQE 729 (1238)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHh----------HHHHHHHHh
Confidence 1223444444444455555555555544321 1111111111111 122222222
Q ss_pred HHHCCCCchHHHHHHHHHHHhcCCH---H---HHHHHHHhc--CCCChhHHHHHHHHHHh----cC----CchhHHHHHH
Q 040394 273 LKIGIEINSHLVTALLDMYVKCGNI---R---DARSVFDEL--CSIDLVSWTAMIVGYTQ----SG----YPDKALKLFT 336 (691)
Q Consensus 273 ~~~g~~~~~~~~~~li~~~~~~g~~---~---~A~~~~~~~--~~~~~~~~~~li~~~~~----~g----~~~~a~~~~~ 336 (691)
. .. .|+......|..-.-+.+.. | -+.+.+-.- ...+..+|..|+..|.+ .| +...|+..+.
T Consensus 730 e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~K 807 (1238)
T KOG1127|consen 730 E-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCK 807 (1238)
T ss_pred c-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHH
Confidence 2 01 12222222222212222211 1 001111000 00123444444444333 11 1224555555
Q ss_pred HhhHCCCCCcHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCC
Q 040394 337 DKKWADFFPNHVTIASVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEK 410 (691)
Q Consensus 337 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 410 (691)
...+. ..-+..+|+.| ......|++.-+...|-......+....+|..+.-.+.+..+++.|...|.....-
T Consensus 808 kaV~L-~ann~~~WnaL-GVlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL 879 (1238)
T KOG1127|consen 808 KAVSL-CANNEGLWNAL-GVLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL 879 (1238)
T ss_pred HHHHH-hhccHHHHHHH-HHhhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhc
Confidence 54433 12233444433 33355566666666666555555556666777777777777777777777776654
No 93
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.00 E-value=2.6e-07 Score=89.90 Aligned_cols=214 Identities=11% Similarity=0.019 Sum_probs=153.3
Q ss_pred cHHHHHHHHHHHHHcCCC--CCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CHhHHHHHHHHHhcCCChHHHHHH
Q 040394 445 AVQVGSSLHAYSTKQGLL--SSNVYVGTALLNFYAKCGDAQSARMVFDAMRE--K-NTVTWSAMIGGYGMQGDGGGSLAL 519 (691)
Q Consensus 445 ~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~ 519 (691)
..+.+..-+.++...... +.....+..+...|...|+.++|...|++..+ | +...|+.+...+...|++++|...
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 445555555555543210 12245677888889999999999999998875 3 678999999999999999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CC
Q 040394 520 FSDMLNEEVQPN-EVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENM--PI 596 (691)
Q Consensus 520 ~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~ 596 (691)
|++..+ +.|+ ..++..+..++...|++++|.+.++... ...|+..........+...++.++|.+.+++. ..
T Consensus 121 ~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al---~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFY---QDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 999998 4565 4567777778889999999999999775 35666432233333345678899999999765 33
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCCCcc
Q 040394 597 EPDVSLFGAFLHGCGLYSRFDLGEVMIKKML-------ELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRGLSK 667 (691)
Q Consensus 597 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 667 (691)
.|+...+ .+ .....|+...+ +.++.+. +..|+.+..|..++.++...|++++|...|++..+.++..
T Consensus 196 ~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 196 DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 3443322 22 22334555443 2444444 4566777899999999999999999999999999876543
No 94
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.99 E-value=1.3e-06 Score=80.41 Aligned_cols=311 Identities=14% Similarity=0.101 Sum_probs=193.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHH---HHHHhcCCchhHHHHHHHhhHCCCCCcHHHHHH-HHHH
Q 040394 281 SHLVTALLDMYVKCGNIRDARSVFDELCSIDLVSWTAMI---VGYTQSGYPDKALKLFTDKKWADFFPNHVTIAS-VLSA 356 (691)
Q Consensus 281 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~-ll~~ 356 (691)
+.-.--+...+...|++..|+.-|...++.|+..|.++. ..|...|+..-|+.=+....+. +||-..-.. --..
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchh
Confidence 333445566677788899999999988888887777765 3577788888887777776654 666433211 1224
Q ss_pred HhcCCChhhHHHHHHHHHHhCCC---chhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHH
Q 040394 357 SAQLGNLNMGRMVHSLGIRLGLE---DYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTL 433 (691)
Q Consensus 357 ~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~ 433 (691)
+.++|.+++|..-|+.+++..+. ...++..++- .++ ....
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~-------~~e------------------------------~~~l 158 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLAL-------IQE------------------------------HWVL 158 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHh-------HHH------------------------------HHHH
Confidence 56777777777777777766654 1111111110 000 1122
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc---cCCHhHHHHHHHHHhcC
Q 040394 434 VSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMR---EKNTVTWSAMIGGYGMQ 510 (691)
Q Consensus 434 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 510 (691)
...+..+...|+...++.....+.+.. +.+...+..-..+|...|++..|+.-++... ..+..+.--+-..+...
T Consensus 159 ~~ql~s~~~~GD~~~ai~~i~~llEi~--~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~v 236 (504)
T KOG0624|consen 159 VQQLKSASGSGDCQNAIEMITHLLEIQ--PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTV 236 (504)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHhcC--cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhh
Confidence 334445566788888888888888877 7888999888999999999998877666544 35666666677777888
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHH-------------HHhcccCCHHHHHHHHHHchhhcCCCCC--h---hHHH
Q 040394 511 GDGGGSLALFSDMLNEEVQPNEVIFTTIL-------------SACSHTGMVGEGWKCFYSMCRDFKFVPS--M---KHYV 572 (691)
Q Consensus 511 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll-------------~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~---~~~~ 572 (691)
|+.+.++...++..+ +.||.......- ......+++-++.+..+...+ ..|. . ..+.
T Consensus 237 gd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r 311 (504)
T KOG0624|consen 237 GDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK---NEPEETMIRYNGFR 311 (504)
T ss_pred hhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---cCCcccceeeeeeh
Confidence 888888888888877 567764322111 112234455555555554422 2333 1 1222
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhH
Q 040394 573 CMVDLLARAGRLEEALEFMENM-PIEPD-VSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYY 637 (691)
Q Consensus 573 ~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 637 (691)
.+-.++...|++-+|+....+. ...|| ..++---..+|....+++.|+.-|+++.+.+|++..+-
T Consensus 312 ~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~r 378 (504)
T KOG0624|consen 312 VLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAR 378 (504)
T ss_pred eeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHH
Confidence 3344455556666666666555 55554 44555555566666667777777777777666654443
No 95
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.2e-06 Score=86.04 Aligned_cols=354 Identities=14% Similarity=0.110 Sum_probs=199.5
Q ss_pred HHHHhcCCHHHHHHHHHhc---CCCChhHHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCc-HHHHHHHHHHHhcCCChh
Q 040394 289 DMYVKCGNIRDARSVFDEL---CSIDLVSWTAMIVGYTQSGYPDKALKLFTDKKWADFFPN-HVTIASVLSASAQLGNLN 364 (691)
Q Consensus 289 ~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~ 364 (691)
++.+..|+++.|...|-+. .++|.+.|+.=..+|...|++++|++=-.+-.+ +.|+ ...|+....++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHH
Confidence 5567889999999999876 445788899999999999999999876555444 4665 468999999999999999
Q ss_pred hHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHH------hCCCC-------CchhHHHHHHhhhC-------
Q 040394 365 MGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFE------TTSEK-------DVIAWNSIISGLDD------- 424 (691)
Q Consensus 365 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~------~~~~~-------~~~~~~~li~~~~~------- 424 (691)
+|..-+.+.++..+.+...++.+.+++...- ++.+.|. ..... ....|..++..+.+
T Consensus 88 eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHHhhcCCchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 9999999999999999999999998882210 0011111 10000 00112222222211
Q ss_pred --------------------------------CCCC------------CH----------HHHHHHHHHHhccCcHHHHH
Q 040394 425 --------------------------------NVSP------------DA----------VTLVSVISACASLGAVQVGS 450 (691)
Q Consensus 425 --------------------------------~~~p------------~~----------~~~~~ll~~~~~~~~~~~a~ 450 (691)
+..| |. .-...+.++.-+..+++.+.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 1111 10 11344555556666777777
Q ss_pred HHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHh----------HHHHHHHHHhcCCChHHHHHHH
Q 040394 451 SLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMREKNTV----------TWSAMIGGYGMQGDGGGSLALF 520 (691)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~li~~~~~~~~~~~A~~~~ 520 (691)
+-+....+.. .+...++....+|...|.+.++...-+...+.+.. .+..+..+|.+.++++.++..|
T Consensus 245 q~y~~a~el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 245 QHYAKALELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHhHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 7777766653 44555666777777777777776666655443211 1222344666677888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChh-HHHHHHHHHHhcCChHHHHHHHHhC--CCC
Q 040394 521 SDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMK-HYVCMVDLLARAGRLEEALEFMENM--PIE 597 (691)
Q Consensus 521 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~--~~~ 597 (691)
.+.......|+..+=. ...+++....+. ..-+.|... -...-...+.+.|++..|++.+.++ ..+
T Consensus 322 ~kaLte~Rt~~~ls~l---------k~~Ek~~k~~e~---~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P 389 (539)
T KOG0548|consen 322 QKALTEHRTPDLLSKL---------KEAEKALKEAER---KAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDP 389 (539)
T ss_pred HHHhhhhcCHHHHHHH---------HHHHHHHHHHHH---HHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Confidence 8876655455443211 111122111111 111222210 0111133344445555555555444 222
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHh
Q 040394 598 PDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQ 662 (691)
Q Consensus 598 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 662 (691)
-|...|..-..+|.+.|.+..|..-.+..++++|+....|..-+.++....+|++|.+.|++.++
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23344444444445555555555555555555555544554444455555555555555544443
No 96
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=6.6e-08 Score=95.39 Aligned_cols=219 Identities=14% Similarity=0.074 Sum_probs=180.2
Q ss_pred HhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHhHHHHHHHHHhcCCChHHH
Q 040394 440 CASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE---KNTVTWSAMIGGYGMQGDGGGS 516 (691)
Q Consensus 440 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A 516 (691)
+.+.|++.+|.-.|+..++.+ |.+...|.-|.......++-..|+..+.+..+ .|....-.|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 457888999999999999988 88999999999999999998899999988875 3677888889999999999999
Q ss_pred HHHHHHHHHCCCC-----C---CHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHH
Q 040394 517 LALFSDMLNEEVQ-----P---NEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEAL 588 (691)
Q Consensus 517 ~~~~~~m~~~g~~-----p---~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 588 (691)
+..++.-+....+ + +...-.. ..+..........++|-++....+..+|+.++..|.-.|--.|++++|+
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 9999998764311 0 0000000 1222223344566777777677777788889999999999999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHh
Q 040394 589 EFMENM-PIEP-DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQ 662 (691)
Q Consensus 589 ~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 662 (691)
+.|+.+ ..+| |...||.|...+....+.++|+..|.+++++.|....+.+.|+-.|...|.|++|.+.|-..+.
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999998 6677 5579999999999999999999999999999999999999999999999999999999877765
No 97
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.88 E-value=1.4e-07 Score=90.21 Aligned_cols=156 Identities=13% Similarity=0.108 Sum_probs=92.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc----ccCC
Q 040394 472 LLNFYAKCGDAQSARMVFDAMREKNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACS----HTGM 547 (691)
Q Consensus 472 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~----~~g~ 547 (691)
....+...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+. ..|. +...+..++. ..+.
T Consensus 108 ~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 108 AATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCchh
Confidence 334555667777777776654 45555666677777777777777777777653 3343 2333333222 2235
Q ss_pred HHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 040394 548 VGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENM-PIEP-DVSLFGAFLHGCGLYSRF-DLGEVMIK 624 (691)
Q Consensus 548 ~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~-~~A~~~~~ 624 (691)
+.+|..+|+++... ..+++.+.+.+..++...|++++|.+++++. ...| +..+...++-+....|+. +.+.+.+.
T Consensus 183 ~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 77777777776333 3456666777777777777777777776665 3333 334555555555556655 56667777
Q ss_pred HHHhcCCCCc
Q 040394 625 KMLELHPDKA 634 (691)
Q Consensus 625 ~~~~~~p~~~ 634 (691)
++...+|+++
T Consensus 261 qL~~~~p~h~ 270 (290)
T PF04733_consen 261 QLKQSNPNHP 270 (290)
T ss_dssp HCHHHTTTSH
T ss_pred HHHHhCCCCh
Confidence 7777777754
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.86 E-value=1.6e-05 Score=80.57 Aligned_cols=194 Identities=11% Similarity=0.027 Sum_probs=106.0
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHhhHCC-CCCcHHHHHHH-HHHHhcCCChhhHHHHHHHHHHhCCCchhHHHH---HH
Q 040394 314 SWTAMIVGYTQSGYPDKALKLFTDKKWAD-FFPNHVTIASV-LSASAQLGNLNMGRMVHSLGIRLGLEDYTVINA---LV 388 (691)
Q Consensus 314 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---l~ 388 (691)
.|..+...+...|+.+.+.+.+....... ..++......+ ...+...|++++|...++...+..|.+...+.. ..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~ 87 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAF 87 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHH
Confidence 34444444445555555444444433221 11222111111 123445566666666666666665554433331 11
Q ss_pred HHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchh
Q 040394 389 DMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPD-AVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVY 467 (691)
Q Consensus 389 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 467 (691)
......+..+.+.+.+.... +..|+ ......+...+...|+++.|...++...+.. |.+..
T Consensus 88 ~~~~~~~~~~~~~~~l~~~~----------------~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~~~~ 149 (355)
T cd05804 88 GLGDFSGMRDHVARVLPLWA----------------PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PDDAW 149 (355)
T ss_pred HhcccccCchhHHHHHhccC----------------cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcH
Confidence 22222344455555554422 12233 3344455566777788888888888887776 56666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcccC-----CH--hHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 040394 468 VGTALLNFYAKCGDAQSARMVFDAMREK-----NT--VTWSAMIGGYGMQGDGGGSLALFSDMLN 525 (691)
Q Consensus 468 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~li~~~~~~~~~~~A~~~~~~m~~ 525 (691)
.+..+...|...|++++|...+++..+. +. ..|..+...+...|++++|..++++...
T Consensus 150 ~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 150 AVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 7777777777888888888877765531 11 2344566667777777777777777654
No 99
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.84 E-value=6.3e-06 Score=83.53 Aligned_cols=299 Identities=8% Similarity=-0.099 Sum_probs=186.7
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHhCCC---chhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCC
Q 040394 349 TIASVLSASAQLGNLNMGRMVHSLGIRLGLE---DYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDN 425 (691)
Q Consensus 349 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 425 (691)
.+..+...+...|+.+.+...+....+..+. ...........+...|++++|...+++..+.+
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-------------- 73 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-------------- 73 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------
Confidence 3444445566667777776666666555554 22233334556778899999999999876541
Q ss_pred CCCCHHHHHH---HHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHhH
Q 040394 426 VSPDAVTLVS---VISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE---KNTVT 499 (691)
Q Consensus 426 ~~p~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~ 499 (691)
+.|...+.. ........+..+.+.+.+.... ... +........+...+...|++++|...+++..+ .+...
T Consensus 74 -P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~-~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~ 150 (355)
T cd05804 74 -PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWA-PEN-PDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWA 150 (355)
T ss_pred -CCcHHHHHHhHHHHHhcccccCchhHHHHHhccC-cCC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHH
Confidence 223333332 1111122455555555555411 111 34445555667788999999999999998875 35667
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHH-H--H
Q 040394 500 WSAMIGGYGMQGDGGGSLALFSDMLNEEV-QPNE--VIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHY-V--C 573 (691)
Q Consensus 500 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~-~--~ 573 (691)
+..+...+...|++++|...+++...... .|+. ..|..+...+...|++++|..++++........+..... + .
T Consensus 151 ~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (355)
T cd05804 151 VHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAAS 230 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHH
Confidence 88899999999999999999999887532 2333 345567778899999999999999873221111222111 1 2
Q ss_pred HHHHHHhcCChHHHHHH--H-HhC-C---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-C---C-----CchhH
Q 040394 574 MVDLLARAGRLEEALEF--M-ENM-P---IEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELH-P---D-----KACYY 637 (691)
Q Consensus 574 li~~~~~~g~~~~A~~~--~-~~~-~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p---~-----~~~~~ 637 (691)
++..+...|....+.++ + ... . .............++...|+.+.|..+++.+.... . . .....
T Consensus 231 ~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~ 310 (355)
T cd05804 231 LLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLP 310 (355)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHH
Confidence 33333444433322222 1 111 1 11112222356667788999999999999987622 1 1 23445
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHhCC
Q 040394 638 VLVSNLYASDGRWIRVNQVRELMKQRG 664 (691)
Q Consensus 638 ~~l~~~~~~~g~~~~A~~~~~~~~~~g 664 (691)
...+.++...|++++|.+.+......+
T Consensus 311 ~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 311 LAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 667778889999999999998887644
No 100
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.84 E-value=1.9e-07 Score=89.30 Aligned_cols=246 Identities=11% Similarity=0.016 Sum_probs=164.1
Q ss_pred HHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhH
Q 040394 389 DMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYV 468 (691)
Q Consensus 389 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 468 (691)
+-+.-.|++..++.-.+ .... .-..+.....-+.+++...|+.+.+. ..+.+.. +|....
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~--------------~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~--~~~l~a 68 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSF--------------SPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS--SPELQA 68 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTS--------------TCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS--SCCCHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCC--------------CchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC--ChhHHH
Confidence 34455678887775555 2221 11123344556667888888766433 3333333 555666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcc-cC----CHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Q 040394 469 GTALLNFYAKCGDAQSARMVFDAMR-EK----NTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACS 543 (691)
Q Consensus 469 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 543 (691)
...+...+...++-+.+..-+++.. ++ +..........+...|++++|++++.+- .+.......+..+.
T Consensus 69 v~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L 142 (290)
T PF04733_consen 69 VRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILL 142 (290)
T ss_dssp HHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHH
Confidence 5556555544456666766665544 22 2222233345677789999999988642 45666777888999
Q ss_pred ccCCHHHHHHHHHHchhhcCCCCChh---HHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHH
Q 040394 544 HTGMVGEGWKCFYSMCRDFKFVPSMK---HYVCMVDLLARAGRLEEALEFMENM--PIEPDVSLFGAFLHGCGLYSRFDL 618 (691)
Q Consensus 544 ~~g~~~~A~~~~~~m~~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~ 618 (691)
+.++++.|.+.++.| ++ ...|.. ...+++..+.-.+.+.+|.-+|+++ ...++..+.+.+..++...|++++
T Consensus 143 ~~~R~dlA~k~l~~~-~~--~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~e 219 (290)
T PF04733_consen 143 KMNRPDLAEKELKNM-QQ--IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEE 219 (290)
T ss_dssp HTT-HHHHHHHHHHH-HC--CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHH
T ss_pred HcCCHHHHHHHHHHH-Hh--cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHH
Confidence 999999999999999 44 444522 2223333333345799999999999 456788899999999999999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhCCCc-HHHHHHHHHHHhC
Q 040394 619 GEVMIKKMLELHPDKACYYVLVSNLYASDGRW-IRVNQVRELMKQR 663 (691)
Q Consensus 619 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~ 663 (691)
|+..++++++.+|+++.+...++.+....|+. +.+.+++.++...
T Consensus 220 Ae~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 220 AEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999999999999999999999999999998 6677888887764
No 101
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=3.2e-05 Score=70.13 Aligned_cols=311 Identities=11% Similarity=-0.001 Sum_probs=181.9
Q ss_pred hhHHHHHHhcCCChHHHHHHhccCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHH-HHHHcc
Q 040394 83 NTKLVSMYGSFGHVKYARSVFDSMPN--P-DFYSFQVMIRWYFLNDLYKDIVEFYKCMRKRLKEHDNFVFSKV-LKACCE 158 (691)
Q Consensus 83 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-l~~~~~ 158 (691)
++..+..+.+..++++|.+++..-.+ | +....+.|...|-...++..|-+.|+++-.. .|...-|..- ..++-+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 55666667778888888888766543 2 4456677777777888888888888888764 4444444322 345556
Q ss_pred cCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhccCC-CChhhHHHHHHHHHhCCChhHHHHHHHHH
Q 040394 159 LRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDETLD-KNVVSWTSMIAGYVQNDCAQEGLVLFNRM 237 (691)
Q Consensus 159 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m 237 (691)
.+.+..|..+...|....--...+...-....-..+|+..+..++++.+. .+..+.+.......+.|+++.|.+-|+..
T Consensus 91 A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaA 170 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAA 170 (459)
T ss_pred hcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHH
Confidence 77788888887766543100111222222233456777788888888763 55666666666667788888888888877
Q ss_pred Hh-CCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-----
Q 040394 238 RE-GFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNIRDARSVFDELCSID----- 311 (691)
Q Consensus 238 ~~-~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----- 311 (691)
.+ .|..| ...|+..+.. .+.|+...|.+...+++++|+...+.. + -|..-+... .+.+..+-
T Consensus 171 lqvsGyqp-llAYniALaH-y~~~qyasALk~iSEIieRG~r~HPEl-g--------IGm~tegiD-vrsvgNt~~lh~S 238 (459)
T KOG4340|consen 171 LQVSGYQP-LLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPEL-G--------IGMTTEGID-VRSVGNTLVLHQS 238 (459)
T ss_pred HhhcCCCc-hhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCcc-C--------ccceeccCc-hhcccchHHHHHH
Confidence 65 34443 4456655443 456777888888888888775321110 0 000000000 00000010
Q ss_pred --hhHHHHHHHHHHhcCCchhHHHHHHHhhHCC-CCCcHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCchhHHHHHH
Q 040394 312 --LVSWTAMIVGYTQSGYPDKALKLFTDKKWAD-FFPNHVTIASVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVINALV 388 (691)
Q Consensus 312 --~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 388 (691)
+..+|.-...+.+.|+++.|.+-+-+|.-+. -..|++|...+.-. -..+++.....-+..+....|-...++..++
T Consensus 239 al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlL 317 (459)
T KOG4340|consen 239 ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLL 317 (459)
T ss_pred HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHH
Confidence 1123333444567778888887777775442 34566666544321 1234444444445555555555777777777
Q ss_pred HHhHhcCChHHHHHHHHhCC
Q 040394 389 DMYAKCHVIADARYIFETTS 408 (691)
Q Consensus 389 ~~~~~~g~~~~a~~~~~~~~ 408 (691)
-.||+..-++-|-.++.+-.
T Consensus 318 llyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVLAENA 337 (459)
T ss_pred HHHhhhHHHhHHHHHHhhCc
Confidence 77777777777777776544
No 102
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=4e-05 Score=75.60 Aligned_cols=102 Identities=16% Similarity=0.139 Sum_probs=51.8
Q ss_pred cccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHH
Q 040394 543 SHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEFMENM-PIEPDV-SLFGAFLHGCGLYSRFDLG 619 (691)
Q Consensus 543 ~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A 619 (691)
.+.|++..|+..|.++++. .|+ ...|....-+|.+.|.+..|++-.+.. ...|+. ..|..=..++....+++.|
T Consensus 369 Fk~gdy~~Av~~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkA 445 (539)
T KOG0548|consen 369 FKKGDYPEAVKHYTEAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKA 445 (539)
T ss_pred HhccCHHHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444322 232 344444444444555444444443333 223322 2333333344445567777
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhC
Q 040394 620 EVMIKKMLELHPDKACYYVLVSNLYASD 647 (691)
Q Consensus 620 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 647 (691)
.+.|++.++.+|++..+...+..+...+
T Consensus 446 leay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 446 LEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 7777777777777777777666666543
No 103
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.74 E-value=0.00017 Score=66.97 Aligned_cols=318 Identities=9% Similarity=0.034 Sum_probs=190.5
Q ss_pred ChhHHHHHHHHhHhcCChHHHHHHHhccCCCChhhHHHHH---HHHHhCCChhHHHHHHHHHHhCCCCCChhhHHH-HHH
Q 040394 179 DSFVLTGLVDMYAKCRDIGSSRQVFDETLDKNVVSWTSMI---AGYVQNDCAQEGLVLFNRMREGFVEGNQITLGS-LVT 254 (691)
Q Consensus 179 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~-li~ 254 (691)
++.-..-|...+...|++..|+..|...++-|+..|.++. ..|...|+...|+.=+.+..+ .+||-..-.. --.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhch
Confidence 4444555667777788888888888887777777776654 467777887777777777766 4565322111 112
Q ss_pred HHHccCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHH
Q 040394 255 ACAKLRALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNIRDARSVFDELCSIDLVSWTAMIVGYTQSGYPDKALKL 334 (691)
Q Consensus 255 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 334 (691)
.+.+.|.++.|..-|+..++... +..+ ...+..+.-..++-. .....+..+...|+...|+.+
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~--s~~~---~~eaqskl~~~~e~~------------~l~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEP--SNGL---VLEAQSKLALIQEHW------------VLVQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCC--Ccch---hHHHHHHHHhHHHHH------------HHHHHHHHHhcCCchhhHHHH
Confidence 34456666666666666555421 1100 011111111111111 111234455667888888888
Q ss_pred HHHhhHCCCCCc-HHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCch
Q 040394 335 FTDKKWADFFPN-HVTIASVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVI 413 (691)
Q Consensus 335 ~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 413 (691)
...+.+. .|- ...+..-..+|...|.+..|+.-++.+.+...++...+.-+-..+...|+.+.++...++..+-
T Consensus 178 i~~llEi--~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--- 252 (504)
T KOG0624|consen 178 ITHLLEI--QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--- 252 (504)
T ss_pred HHHHHhc--CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc---
Confidence 8887764 444 4444455568888888888888888888877777777777778888888888888888777653
Q ss_pred hHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 040394 414 AWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMR 493 (691)
Q Consensus 414 ~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 493 (691)
.||....-..-. .+....+.++.| ......++|.++++..+...
T Consensus 253 -------------dpdHK~Cf~~YK------klkKv~K~les~-----------------e~~ie~~~~t~cle~ge~vl 296 (504)
T KOG0624|consen 253 -------------DPDHKLCFPFYK------KLKKVVKSLESA-----------------EQAIEEKHWTECLEAGEKVL 296 (504)
T ss_pred -------------CcchhhHHHHHH------HHHHHHHHHHHH-----------------HHHHhhhhHHHHHHHHHHHH
Confidence 355432211111 111111111111 11233455666666555544
Q ss_pred c--CC--Hh---HHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHc
Q 040394 494 E--KN--TV---TWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPN-EVIFTTILSACSHTGMVGEGWKCFYSM 558 (691)
Q Consensus 494 ~--~~--~~---~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m 558 (691)
+ |. .+ .+..+-.++...+++.+|++...+..+ +.|| ..++.--..+|.-...+|.|+.-|+..
T Consensus 297 k~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A 367 (504)
T KOG0624|consen 297 KNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKA 367 (504)
T ss_pred hcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3 22 12 334455666778888888888888887 4565 567777777888888888888888865
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.74 E-value=4.7e-05 Score=87.75 Aligned_cols=368 Identities=9% Similarity=-0.011 Sum_probs=218.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhH--HHHHHHHHHhcCCchhHHHHHHHhhHCCCCCcHHHHHHHHHHHhcCCCh
Q 040394 286 ALLDMYVKCGNIRDARSVFDELCSIDLVS--WTAMIVGYTQSGYPDKALKLFTDKKWADFFPNHVTIASVLSASAQLGNL 363 (691)
Q Consensus 286 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 363 (691)
.....+...|++.+|..........+... ...........|+++.+..+++.+.......+..........+...|++
T Consensus 346 raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~ 425 (903)
T PRK04841 346 AAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRY 425 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCH
Confidence 33444666677777766666554332211 1112233455677777777776653221111222222333455677888
Q ss_pred hhHHHHHHHHHHhCCC---------chhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCC-CHHHH
Q 040394 364 NMGRMVHSLGIRLGLE---------DYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSP-DAVTL 433 (691)
Q Consensus 364 ~~a~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p-~~~~~ 433 (691)
+++...+......-.. .......+...+...|++++|...+++....... +..+ .....
T Consensus 426 ~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~-----------~~~~~~~~a~ 494 (903)
T PRK04841 426 SEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPL-----------TWYYSRIVAT 494 (903)
T ss_pred HHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-----------ccHHHHHHHH
Confidence 8888887766543111 1222233445567789999998888875432000 0000 11234
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHc----CCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc-------C----CHh
Q 040394 434 VSVISACASLGAVQVGSSLHAYSTKQ----GLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE-------K----NTV 498 (691)
Q Consensus 434 ~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~ 498 (691)
+.+...+...|+++.|...++..... +...........+...+...|++++|...+++... + ...
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 574 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEF 574 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence 55556677889999999888877643 21011123445566778889999999998876543 1 112
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHH---
Q 040394 499 TWSAMIGGYGMQGDGGGSLALFSDMLNE--EVQPN--EVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHY--- 571 (691)
Q Consensus 499 ~~~~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~--- 571 (691)
.+..+...+...|++++|...+++.... ...+. ...+..+.......|++++|.+.++..............+
T Consensus 575 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 654 (903)
T PRK04841 575 LLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIAN 654 (903)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhH
Confidence 3445556677789999999988887653 11222 2333344556778899999998888763321111111111
Q ss_pred --HHHHHHHHhcCChHHHHHHHHhCCCC--CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCchhH
Q 040394 572 --VCMVDLLARAGRLEEALEFMENMPIE--PDV----SLFGAFLHGCGLYSRFDLGEVMIKKMLELH------PDKACYY 637 (691)
Q Consensus 572 --~~li~~~~~~g~~~~A~~~~~~~~~~--p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~ 637 (691)
...+..+...|+.+.|.+++...... ... ..+..+..++...|++++|...++++.... +.....+
T Consensus 655 ~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~ 734 (903)
T PRK04841 655 ADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNL 734 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 11223445678999999988776211 111 123456667788899999999999988742 1223466
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHhCC
Q 040394 638 VLVSNLYASDGRWIRVNQVRELMKQRG 664 (691)
Q Consensus 638 ~~l~~~~~~~g~~~~A~~~~~~~~~~g 664 (691)
..++.++.+.|+.++|.+.+.+..+..
T Consensus 735 ~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 735 ILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 778889999999999999998888744
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.67 E-value=0.0021 Score=74.15 Aligned_cols=408 Identities=8% Similarity=-0.031 Sum_probs=242.5
Q ss_pred hHHHHHHHHHHHcCCC--C-C----cchHHHHHHHHccc----CChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCCh
Q 040394 128 KDIVEFYKCMRKRLKE--H-D----NFVFSKVLKACCEL----RDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDI 196 (691)
Q Consensus 128 ~~a~~~~~~m~~~~~~--~-~----~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 196 (691)
+.+.++++.+...|.- + + ...|+.++..+.+. .+.++...+ +......+...|++
T Consensus 292 ~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~~~~~~l--------------h~raa~~~~~~g~~ 357 (903)
T PRK04841 292 ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWELAQELPEL--------------HRAAAEAWLAQGFP 357 (903)
T ss_pred CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcCchHHHHH--------------HHHHHHHHHHCCCH
Confidence 3456677777766641 1 1 24456666555432 122222233 33334456667777
Q ss_pred HHHHHHHhccCCCChhh--HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHH
Q 040394 197 GSSRQVFDETLDKNVVS--WTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILK 274 (691)
Q Consensus 197 ~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~ 274 (691)
.+|.............. ...........|+++.+...++.+.......+..........+...|+++++..++....+
T Consensus 358 ~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~ 437 (903)
T PRK04841 358 SEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQ 437 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777666654432211 1122234456778887777776653221112222233344455677899999988887755
Q ss_pred HCC------CCc--hHHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCh----hHHHHHHHHHHhcCCchhHHHHHHHh
Q 040394 275 IGI------EIN--SHLVTALLDMYVKCGNIRDARSVFDELCS----IDL----VSWTAMIVGYTQSGYPDKALKLFTDK 338 (691)
Q Consensus 275 ~g~------~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~li~~~~~~g~~~~a~~~~~~m 338 (691)
.-- .+. ......+...+...|++++|...+++... .+. ...+.+...+...|++++|...+++.
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~a 517 (903)
T PRK04841 438 ELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQT 517 (903)
T ss_pred hccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 311 111 12223334556788999999998887522 221 24455666778899999999998887
Q ss_pred hHC----CC-CCcHHHHHHHHHHHhcCCChhhHHHHHHHHHHh----CCC----chhHHHHHHHHhHhcCChHHHHHHHH
Q 040394 339 KWA----DF-FPNHVTIASVLSASAQLGNLNMGRMVHSLGIRL----GLE----DYTVINALVDMYAKCHVIADARYIFE 405 (691)
Q Consensus 339 ~~~----g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 405 (691)
... |- .+...++..+...+...|+++.|...++..... +.. ....+..+...+...|++++|...+.
T Consensus 518 l~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~ 597 (903)
T PRK04841 518 EQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCAR 597 (903)
T ss_pred HHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 643 11 111234445566778899999999887776553 221 22334556667788899999998888
Q ss_pred hCCCCCchhHHHHHHhhhCCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchh-----HHHHHHHHHHh
Q 040394 406 TTSEKDVIAWNSIISGLDDNVSP--DAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVY-----VGTALLNFYAK 478 (691)
Q Consensus 406 ~~~~~~~~~~~~li~~~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~ 478 (691)
+...... ...+ ....+..+.......|+.+.|...+.............. .....+..+..
T Consensus 598 ~al~~~~------------~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (903)
T PRK04841 598 KGLEVLS------------NYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQM 665 (903)
T ss_pred HhHHhhh------------ccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHH
Confidence 7643200 0112 123444556677789999999999888755321011111 11112344556
Q ss_pred cCCHHHHHHHHHhcccCC---H----hHHHHHHHHHhcCCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHhcccC
Q 040394 479 CGDAQSARMVFDAMREKN---T----VTWSAMIGGYGMQGDGGGSLALFSDMLNE----EVQPNE-VIFTTILSACSHTG 546 (691)
Q Consensus 479 ~g~~~~A~~~~~~~~~~~---~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p~~-~~~~~ll~~~~~~g 546 (691)
.|+.+.|..++.....+. . ..+..+..++...|++++|...+++.... |..++. .+...+..++...|
T Consensus 666 ~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G 745 (903)
T PRK04841 666 TGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQG 745 (903)
T ss_pred CCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcC
Confidence 899999999987766432 1 11345677788899999999999887753 333322 34555556788999
Q ss_pred CHHHHHHHHHHchhh
Q 040394 547 MVGEGWKCFYSMCRD 561 (691)
Q Consensus 547 ~~~~A~~~~~~m~~~ 561 (691)
+.++|...+.+....
T Consensus 746 ~~~~A~~~L~~Al~l 760 (903)
T PRK04841 746 RKSEAQRVLLEALKL 760 (903)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999998877543
No 106
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.66 E-value=2.1e-06 Score=81.11 Aligned_cols=182 Identities=12% Similarity=-0.002 Sum_probs=124.7
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--CC-H---hHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHH---
Q 040394 463 SSNVYVGTALLNFYAKCGDAQSARMVFDAMRE--KN-T---VTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEV--- 533 (691)
Q Consensus 463 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--- 533 (691)
+.....+..+...+...|++++|...|+++.. |+ . ..+..+..++...|++++|+..++++.+. .|+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchH
Confidence 45566777778888889999999999988764 32 2 35677788888899999999999998874 33322
Q ss_pred -HHHHHHHHhccc--------CCHHHHHHHHHHchhhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHH
Q 040394 534 -IFTTILSACSHT--------GMVGEGWKCFYSMCRDFKFVPSM-KHYVCMVDLLARAGRLEEALEFMENMPIEPDVSLF 603 (691)
Q Consensus 534 -~~~~ll~~~~~~--------g~~~~A~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 603 (691)
++..+-.++... |++++|.+.++.+... .|+. ..+..+.... ...... ....
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~----~~~~~~-----------~~~~ 169 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMD----YLRNRL-----------AGKE 169 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHH----HHHHHH-----------HHHH
Confidence 333333344433 6777888888877533 4442 2222211110 001000 0111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHhCCCcHHHHHHHHHHHhCC
Q 040394 604 GAFLHGCGLYSRFDLGEVMIKKMLELHPDKA---CYYVLVSNLYASDGRWIRVNQVRELMKQRG 664 (691)
Q Consensus 604 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 664 (691)
..+...+.+.|++++|...++++.+..|+++ ..+..++.++...|++++|..+++.+....
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 2456678899999999999999999877654 688999999999999999999999887653
No 107
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.64 E-value=3.5e-06 Score=91.44 Aligned_cols=201 Identities=15% Similarity=0.181 Sum_probs=168.7
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC--------CHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHH
Q 040394 463 SSNVYVGTALLNFYAKCGDAQSARMVFDAMREK--------NTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVI 534 (691)
Q Consensus 463 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 534 (691)
|.....|-..|......++.+.|.+++++.... -.-.|.++++.....|.-+...++|++..+. --....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 677778888899999999999999999987641 2347888888888888888899999999873 222356
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHH
Q 040394 535 FTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENM-PIEPD---VSLFGAFLHGC 610 (691)
Q Consensus 535 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~ 610 (691)
|..|...|.+.+.+++|.++++.|.++++ -....|..++..+.+..+-+.|.++++++ ..-|. .......++.-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 78888899999999999999999998876 55678999999999999999999999887 43343 34555566667
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCCCcc
Q 040394 611 GLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRGLSK 667 (691)
Q Consensus 611 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 667 (691)
.+.||.+.++.+|+..+.-.|.....|..++..-.+.|+.+.++.+|++....++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 799999999999999999999999999999999999999999999999999988754
No 108
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.59 E-value=3.4e-06 Score=76.12 Aligned_cols=119 Identities=9% Similarity=0.082 Sum_probs=86.5
Q ss_pred cCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--HHH
Q 040394 545 TGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEFMENM-PIEP-DVSLFGAFLHGC-GLYSR--FDL 618 (691)
Q Consensus 545 ~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~g~--~~~ 618 (691)
.++.+++...++... ...|+ ...|..+...|...|++++|.+.+++. ...| +...+..+..++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L---~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKI---RANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 455566666665443 33444 667777888888888888888888877 4445 445666666653 56666 488
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCCCc
Q 040394 619 GEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRGLS 666 (691)
Q Consensus 619 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 666 (691)
|..+++++++.+|+++..+..++..+.+.|++++|+..++++++...+
T Consensus 129 A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 129 TREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 888888888888888888888888888888888888888888876543
No 109
>PF12854 PPR_1: PPR repeat
Probab=98.59 E-value=7.7e-08 Score=57.89 Aligned_cols=32 Identities=34% Similarity=0.580 Sum_probs=23.1
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 040394 276 GIEINSHLVTALLDMYVKCGNIRDARSVFDEL 307 (691)
Q Consensus 276 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 307 (691)
|+.||..+|++||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777766
No 110
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.58 E-value=3.1e-06 Score=83.95 Aligned_cols=256 Identities=11% Similarity=0.073 Sum_probs=157.9
Q ss_pred HhcCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHH
Q 040394 357 SAQLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSV 436 (691)
Q Consensus 357 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~l 436 (691)
+.+.|++.+|.-.|+..++..|.+..+|..|.......++-..|+..+.++.+-| +-|......|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld---------------P~NleaLmaL 359 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD---------------PTNLEALMAL 359 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC---------------CccHHHHHHH
Confidence 3455666666666777776666666666666666666666666666666555432 1122333344
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHhHHHHHHHHHhcCCChHHH
Q 040394 437 ISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMREKNTVTWSAMIGGYGMQGDGGGS 516 (691)
Q Consensus 437 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 516 (691)
.-.|...|.-..|...+...+.... +-.... ..+ ++..+-+. ..+.........
T Consensus 360 AVSytNeg~q~~Al~~L~~Wi~~~p--~y~~l~--------~a~--------------~~~~~~~~--~s~~~~~~l~~i 413 (579)
T KOG1125|consen 360 AVSYTNEGLQNQALKMLDKWIRNKP--KYVHLV--------SAG--------------ENEDFENT--KSFLDSSHLAHI 413 (579)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhCc--cchhcc--------ccC--------------ccccccCC--cCCCCHHHHHHH
Confidence 4444444444444444444443331 110000 000 00000000 011111122333
Q ss_pred HHHHHHH-HHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 040394 517 LALFSDM-LNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEFMENM 594 (691)
Q Consensus 517 ~~~~~~m-~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 594 (691)
.++|-++ ...+..+|......|--.|--.|.+++|...|+..+ .++|+ ..+||-|...++...+.++|+..|++.
T Consensus 414 ~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rA 490 (579)
T KOG1125|consen 414 QELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRA 490 (579)
T ss_pred HHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHH
Confidence 4444444 445545777777777777888999999999999664 57887 678999999999999999999999998
Q ss_pred -CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----C-----chhHHHHHHHHHhCCCcHHHHHH
Q 040394 595 -PIEPDVS-LFGAFLHGCGLYSRFDLGEVMIKKMLELHPD-----K-----ACYYVLVSNLYASDGRWIRVNQV 656 (691)
Q Consensus 595 -~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~-----~~~~~~l~~~~~~~g~~~~A~~~ 656 (691)
.++|+.+ .+..|.-.|...|.+++|...|-.++.+.+. . -.+|..|-.++.-.++.|.+.+.
T Consensus 491 LqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 491 LQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 7888864 7777888999999999999999999885543 1 24677777777777777655443
No 111
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.55 E-value=0.0021 Score=67.84 Aligned_cols=159 Identities=11% Similarity=0.034 Sum_probs=97.1
Q ss_pred HHHHHHHHHhcCCChHH---HHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHH
Q 040394 499 TWSAMIGGYGMQGDGGG---SLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMV 575 (691)
Q Consensus 499 ~~~~li~~~~~~~~~~~---A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 575 (691)
+-+.|+..+.+.++... |+-+++.-.... +-|..+-..+|+.|+-.|-+..|.++|+.+ .-..+..|..-|- +.
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tL-dIK~IQ~DTlgh~-~~ 514 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTL-DIKNIQTDTLGHL-IF 514 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhc-chHHhhhccchHH-HH
Confidence 45677888888887664 555555555431 345556667788999889999999999988 4446776654443 34
Q ss_pred HHHHhcCChHHHHHHHHhC-C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----chhHHHHHHHHHhCC
Q 040394 576 DLLARAGRLEEALEFMENM-P-IEPD-VSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDK----ACYYVLVSNLYASDG 648 (691)
Q Consensus 576 ~~~~~~g~~~~A~~~~~~~-~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g 648 (691)
..+...|++..+...++.. . ...+ ..+-..+..+| +.|.+.+..++..-=.++.-.. ..+-..........+
T Consensus 515 ~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~ 593 (932)
T KOG2053|consen 515 RRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNAD 593 (932)
T ss_pred HHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5566677888777766665 1 1111 12233333444 6777777666654433332221 223344556677778
Q ss_pred CcHHHHHHHHHHH
Q 040394 649 RWIRVNQVRELMK 661 (691)
Q Consensus 649 ~~~~A~~~~~~~~ 661 (691)
+.++-.+.++-|.
T Consensus 594 ~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 594 RGTQLLKLLESMK 606 (932)
T ss_pred cHHHHHHHHhccc
Confidence 8877777776665
No 112
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.54 E-value=2.3e-06 Score=72.95 Aligned_cols=120 Identities=10% Similarity=0.066 Sum_probs=79.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 040394 518 ALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEFMENM-P 595 (691)
Q Consensus 518 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 595 (691)
.++++.++ +.|+. +.....++...|++++|...|+... .+.|+ ...+..+..++.+.|++++|+..|++. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444444 34443 3344556667777777777777653 34554 566677777777777777777777776 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 040394 596 IEP-DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLY 644 (691)
Q Consensus 596 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 644 (691)
..| +...+..+..++...|++++|+..++++++..|+++.++...+.++
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 333 5567777777777777888888888887777777777776666554
No 113
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.51 E-value=0.0016 Score=64.71 Aligned_cols=155 Identities=14% Similarity=0.136 Sum_probs=117.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--CCHh-HHHHHHHHH
Q 040394 431 VTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE--KNTV-TWSAMIGGY 507 (691)
Q Consensus 431 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~ 507 (691)
.+|...|+...+..-+..|..+|.+..+.+..+....++++++..|| .++..-|.++|+--.+ +|.. --...+.-+
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL 445 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFL 445 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 46778888888888999999999999998874457888889998776 5788999999987654 3443 345567777
Q ss_pred hcCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcccCCHHHHHHHHHHchhhcC--CCCChhHHHHHHHHHHhcCC
Q 040394 508 GMQGDGGGSLALFSDMLNEEVQPNE--VIFTTILSACSHTGMVGEGWKCFYSMCRDFK--FVPSMKHYVCMVDLLARAGR 583 (691)
Q Consensus 508 ~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~g~ 583 (691)
...++-..+..+|++....++.|+. ..|..+|.--+.-|++..+.++-+++...+. ..|....-..+++.|.-.+.
T Consensus 446 ~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~ 525 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDL 525 (656)
T ss_pred HHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccc
Confidence 8888999999999999998777765 6899999988899999999988887755544 33333344445555555544
Q ss_pred hHH
Q 040394 584 LEE 586 (691)
Q Consensus 584 ~~~ 586 (691)
...
T Consensus 526 ~~c 528 (656)
T KOG1914|consen 526 YPC 528 (656)
T ss_pred ccc
Confidence 433
No 114
>PF12854 PPR_1: PPR repeat
Probab=98.51 E-value=1.3e-07 Score=56.96 Aligned_cols=32 Identities=16% Similarity=0.144 Sum_probs=24.0
Q ss_pred CCCCChhhHHHHHHHHHccCChhhHHHHHHHH
Q 040394 241 FVEGNQITLGSLVTACAKLRALHQGKWLHGYI 272 (691)
Q Consensus 241 ~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~ 272 (691)
|+.||..||+++|+++|+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 66777777777777777777777777777766
No 115
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.48 E-value=2.8e-06 Score=72.44 Aligned_cols=101 Identities=8% Similarity=-0.084 Sum_probs=89.1
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 040394 563 KFVPSMKHYVCMVDLLARAGRLEEALEFMENM-PIEP-DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLV 640 (691)
Q Consensus 563 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 640 (691)
.+.|+. +..+...+...|++++|.+.|+.. ...| +...|..+..++...|++++|...|+++.+++|+++..+..+
T Consensus 21 ~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~l 98 (144)
T PRK15359 21 SVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQT 98 (144)
T ss_pred HcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 345553 556788889999999999999998 5555 667889999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHhCCC
Q 040394 641 SNLYASDGRWIRVNQVRELMKQRGL 665 (691)
Q Consensus 641 ~~~~~~~g~~~~A~~~~~~~~~~g~ 665 (691)
+.++...|++++|++.++..++...
T Consensus 99 g~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 99 GVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999988553
No 116
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.47 E-value=1.6e-05 Score=85.17 Aligned_cols=172 Identities=10% Similarity=0.023 Sum_probs=104.4
Q ss_pred CHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHH
Q 040394 496 NTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEV-IFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVC 573 (691)
Q Consensus 496 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ 573 (691)
++..+-.|.....+.|..++|..+++...+ +.|+.. ....+...+.+.+++++|...+++.. ...|+ ......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l---~~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF---SGGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh---hcCCCCHHHHHH
Confidence 466666677777777777777777777776 466654 34445557777777777777777543 34565 455566
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcH
Q 040394 574 MVDLLARAGRLEEALEFMENM-PIEPD-VSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWI 651 (691)
Q Consensus 574 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 651 (691)
+..++.+.|++++|.++|++. ...|+ ..++..+..++...|+.++|...|+++++...+-...|..+ .++..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~------~~~~~ 233 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR------LVDLN 233 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH------HHHHH
Confidence 666777777777777777776 22333 55677777777777777777777777776433323222211 12223
Q ss_pred HHHHHHHHHHhCCCccCCCeeEEEeCC
Q 040394 652 RVNQVRELMKQRGLSKSPGCSLVDLDI 678 (691)
Q Consensus 652 ~A~~~~~~~~~~g~~~~~~~~~~~~~~ 678 (691)
.-...++.+.-.++......+.+-++-
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (694)
T PRK15179 234 ADLAALRRLGVEGDGRDVPVSILVLEK 260 (694)
T ss_pred HHHHHHHHcCcccccCCCceeeeeHHH
Confidence 334455555555555555555554443
No 117
>PLN02789 farnesyltranstransferase
Probab=98.46 E-value=9.7e-05 Score=71.81 Aligned_cols=223 Identities=11% Similarity=-0.011 Sum_probs=163.2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcC-CHHHHHHHHHhccc---CCHhHHHHHHHHHh
Q 040394 433 LVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCG-DAQSARMVFDAMRE---KNTVTWSAMIGGYG 508 (691)
Q Consensus 433 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 508 (691)
+..+-..+...+..+.|.....++++.. |.+..+++.....+...| ++++++..++++.+ ++..+|+.-...+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHH
Confidence 3334444556778899999999999887 677777777777777777 57999999998875 35556776555555
Q ss_pred cCCCh--HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHHhc---C
Q 040394 509 MQGDG--GGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVP-SMKHYVCMVDLLARA---G 582 (691)
Q Consensus 509 ~~~~~--~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~---g 582 (691)
+.|+. ++++.+++++.+.. +-|...|+....++...|+++++++.++++++. .| |...|+....++.+. |
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~---d~~N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE---DVRNNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---CCCchhHHHHHHHHHHhccccc
Confidence 56653 67899999998853 345677887777888889999999999988644 33 356666665555444 2
Q ss_pred Ch----HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCC----
Q 040394 583 RL----EEALEFMENM-PIEP-DVSLFGAFLHGCGLY----SRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDG---- 648 (691)
Q Consensus 583 ~~----~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---- 648 (691)
.. ++++++..++ ...| |...|+.+...+... ++..+|...+.+.....|+++.....|+.+|+...
T Consensus 194 ~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~ 273 (320)
T PLN02789 194 GLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTA 273 (320)
T ss_pred cccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccch
Confidence 22 4667776554 4444 567888888888773 45577999999988899999999999999998643
Q ss_pred --------------CcHHHHHHHHHHH
Q 040394 649 --------------RWIRVNQVRELMK 661 (691)
Q Consensus 649 --------------~~~~A~~~~~~~~ 661 (691)
..++|.++++.+.
T Consensus 274 ~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 274 EFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hhhhhhhccccccccHHHHHHHHHHHH
Confidence 3467888888883
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.38 E-value=1.9e-05 Score=80.53 Aligned_cols=221 Identities=9% Similarity=-0.021 Sum_probs=168.3
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--CCHhHHHH
Q 040394 425 NVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE--KNTVTWSA 502 (691)
Q Consensus 425 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ 502 (691)
+.+|--..-..+...+.+.|=...|..++++... +..++..|+..|+...|..+..+-.+ |+...|..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erlem----------w~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~ 462 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLEM----------WDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCL 462 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHHH----------HHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHH
Confidence 5566655566667777778888888888876543 34567788888888888887766554 57777888
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhc
Q 040394 503 MIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARA 581 (691)
Q Consensus 503 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~ 581 (691)
+.+.....--+++|.++.+..-.. .-..+.......++++++.+.|+. ...+.|- ..+|-.+..+..+.
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~---sl~~nplq~~~wf~~G~~ALql 532 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLER---SLEINPLQLGTWFGLGCAALQL 532 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHH---HhhcCccchhHHHhccHHHHHH
Confidence 877777777777777777654332 111111222346888899888884 3345554 66888888888899
Q ss_pred CChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHH
Q 040394 582 GRLEEALEFMENM-PIEPDV-SLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVREL 659 (691)
Q Consensus 582 g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 659 (691)
++++.|.+.|... ...||. ..||.+-.+|.+.|+-.+|...++++++.+-++..+|.....+-.+-|.|++|++.+.+
T Consensus 533 ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 533 EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 9999999999887 667765 59999999999999999999999999998888888888888888999999999999999
Q ss_pred HHhCCC
Q 040394 660 MKQRGL 665 (691)
Q Consensus 660 ~~~~g~ 665 (691)
+.+...
T Consensus 613 ll~~~~ 618 (777)
T KOG1128|consen 613 LLDLRK 618 (777)
T ss_pred HHHhhh
Confidence 987544
No 119
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.37 E-value=0.0011 Score=72.19 Aligned_cols=218 Identities=10% Similarity=0.068 Sum_probs=135.7
Q ss_pred hCCCCch--hhhHHHHHHhcCCChHHHHHHhccCCC--CCcc-hHHHHHHHHHhCCChhHHHHH----------------
Q 040394 75 DGLTNDK--CNTKLVSMYGSFGHVKYARSVFDSMPN--PDFY-SFQVMIRWYFLNDLYKDIVEF---------------- 133 (691)
Q Consensus 75 ~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~ll~~~~~~~~~~~a~~~---------------- 133 (691)
...+++. .+..|+..|-+.+++++|.++.+...+ |+.. .|..+.-.+.+.++..++..+
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVE 103 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHH
Confidence 3344443 677788888788888888887775432 3332 333333345555555555444
Q ss_pred --HHHHHHcCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhccCCCCh
Q 040394 134 --YKCMRKRLKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDETLDKNV 211 (691)
Q Consensus 134 --~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 211 (691)
+..|... .-+...+..+..+|-+.|+.++|..+++++++..+.|+.+.|-+.-.|... +.++|++++.+.
T Consensus 104 ~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA----- 175 (906)
T PRK14720 104 HICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKA----- 175 (906)
T ss_pred HHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----
Confidence 2222221 122246666777777778888888888888888866888888888888888 888887776654
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHH-CCCCchHHHHHHHHH
Q 040394 212 VSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKI-GIEINSHLVTALLDM 290 (691)
Q Consensus 212 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~ 290 (691)
+..+...+++.++.++|.++.... |+ +++.-.++.+.+... |..--+.++-.+-..
T Consensus 176 ------V~~~i~~kq~~~~~e~W~k~~~~~--~~---------------d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~ 232 (906)
T PRK14720 176 ------IYRFIKKKQYVGIEEIWSKLVHYN--SD---------------DFDFFLRIERKVLGHREFTRLVGLLEDLYEP 232 (906)
T ss_pred ------HHHHHhhhcchHHHHHHHHHHhcC--cc---------------cchHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 233666678888888888887643 22 222222333333332 333345556666777
Q ss_pred HHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHH
Q 040394 291 YVKCGNIRDARSVFDELCS---IDLVSWTAMIVGYT 323 (691)
Q Consensus 291 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 323 (691)
|-+.++++++..+|+.+.+ .|..+..-++..|.
T Consensus 233 y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 233 YKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 8888889999999988833 35556666666655
No 120
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.36 E-value=6.7e-05 Score=81.30 Aligned_cols=150 Identities=11% Similarity=0.122 Sum_probs=78.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040394 465 NVYVGTALLNFYAKCGDAQSARMVFDAMRE---KNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSA 541 (691)
Q Consensus 465 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 541 (691)
+...+..+..+|-+.|+.++|..+++++.+ .|+...|.+...|... +.++|.+++.+....
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--------------- 178 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--------------- 178 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------
Confidence 334455555566666666666666665553 2455555555555555 666666655555442
Q ss_pred hcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 040394 542 CSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEFMENMPIEPDVSLFGAFLHGCGLYSRFDLGE 620 (691)
Q Consensus 542 ~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 620 (691)
+...+++..+.++|.+++. ..|+ ...+-.+....... .+..--..++.-+-..|...++++++.
T Consensus 179 ~i~~kq~~~~~e~W~k~~~---~~~~d~d~f~~i~~ki~~~------------~~~~~~~~~~~~l~~~y~~~~~~~~~i 243 (906)
T PRK14720 179 FIKKKQYVGIEEIWSKLVH---YNSDDFDFFLRIERKVLGH------------REFTRLVGLLEDLYEPYKALEDWDEVI 243 (906)
T ss_pred HHhhhcchHHHHHHHHHHh---cCcccchHHHHHHHHHHhh------------hccchhHHHHHHHHHHHhhhhhhhHHH
Confidence 3334455555666665532 2232 11111111111111 111222334444555566666777777
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHH
Q 040394 621 VMIKKMLELHPDKACYYVLVSNLYA 645 (691)
Q Consensus 621 ~~~~~~~~~~p~~~~~~~~l~~~~~ 645 (691)
.+++.+++.+|.|.....-++.+|.
T Consensus 244 ~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 244 YILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHhcCCcchhhHHHHHHHHH
Confidence 7777777777777766666666665
No 121
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=0.00031 Score=63.22 Aligned_cols=176 Identities=14% Similarity=0.040 Sum_probs=107.1
Q ss_pred HHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCC
Q 040394 451 SLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMREKNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQP 530 (691)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 530 (691)
++.+.+..... ..+......-...|+..|++++|.+...... +....-.=+..+.+..+.+-|...+++|.+ --
T Consensus 94 ~l~E~~a~~~~-~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~---id 167 (299)
T KOG3081|consen 94 SLYELVADSTD-GSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQ---ID 167 (299)
T ss_pred HHHHHHHhhcc-chhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cc
Confidence 33444444332 3333333334456778888888888877733 233332334455666777888888888876 33
Q ss_pred CHHHHHHHHHHhc----ccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHH
Q 040394 531 NEVIFTTILSACS----HTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENM--PIEPDVSLFG 604 (691)
Q Consensus 531 ~~~~~~~ll~~~~----~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~ 604 (691)
+..|.+-+..++. ..+.+.+|.-+|++|..+ ..|+..+.+-...++...|++++|..+++.. ....++.+..
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~ 245 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLA 245 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHH
Confidence 5556665555443 345677888888887433 5677777777777777788888888877776 3334455554
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHhcCCCCc
Q 040394 605 AFLHGCGLYS-RFDLGEVMIKKMLELHPDKA 634 (691)
Q Consensus 605 ~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~ 634 (691)
.++-+-...| +.+-..+.+.+....+|+++
T Consensus 246 Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 246 NLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 4444443444 44555677777777777754
No 122
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.35 E-value=0.00014 Score=79.73 Aligned_cols=236 Identities=12% Similarity=0.110 Sum_probs=158.9
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCC-----HHHHHHHHHHHhc
Q 040394 368 MVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPD-----AVTLVSVISACAS 442 (691)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~-----~~~~~~ll~~~~~ 442 (691)
.-|+......|.+...|-..|......+++++|.+++++.... +.+. ...|.++++.-..
T Consensus 1445 eDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t---------------IN~REeeEKLNiWiA~lNlEn~ 1509 (1710)
T KOG1070|consen 1445 EDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKT---------------INFREEEEKLNIWIAYLNLENA 1509 (1710)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh---------------CCcchhHHHHHHHHHHHhHHHh
Confidence 3355566666667777888888888888888888888887643 2221 1356666666666
Q ss_pred cCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CHhHHHHHHHHHhcCCChHHHHHH
Q 040394 443 LGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMREK---NTVTWSAMIGGYGMQGDGGGSLAL 519 (691)
Q Consensus 443 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~ 519 (691)
.|.-+...++|+++.+.. ....+|..|...|.+.+++++|.++++.|.++ ....|...+..+.++++.+.|..+
T Consensus 1510 yG~eesl~kVFeRAcqyc---d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~l 1586 (1710)
T KOG1070|consen 1510 YGTEESLKKVFERACQYC---DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAAREL 1586 (1710)
T ss_pred hCcHHHHHHHHHHHHHhc---chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHH
Confidence 677778888888887754 33556778888888888888888888888753 566888888888888888888888
Q ss_pred HHHHHHCCCCCCH---HHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--
Q 040394 520 FSDMLNEEVQPNE---VIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENM-- 594 (691)
Q Consensus 520 ~~~m~~~g~~p~~---~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-- 594 (691)
+.+..+. -|.. ....-.++.-.+.|+.+++..+|+..+..+ +--...|+.+++.-.++|+.+.+..+|++.
T Consensus 1587 L~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~ 1662 (1710)
T KOG1070|consen 1587 LKRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIE 1662 (1710)
T ss_pred HHHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 8888773 4442 222333344456788888888888775442 222567788888888888888888888776
Q ss_pred -CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHH
Q 040394 595 -PIEPDV--SLFGAFLHGCGLYSRFDLGEVMIKK 625 (691)
Q Consensus 595 -~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~ 625 (691)
+..|-. ..|...+..-...||-+.++.+=.+
T Consensus 1663 l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKar 1696 (1710)
T KOG1070|consen 1663 LKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKAR 1696 (1710)
T ss_pred cCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 333322 2444444444445554444444333
No 123
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.35 E-value=0.0041 Score=61.90 Aligned_cols=78 Identities=15% Similarity=0.146 Sum_probs=56.3
Q ss_pred CCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhccCC--CChhhHHHHHHH
Q 040394 143 EHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDETLD--KNVVSWTSMIAG 220 (691)
Q Consensus 143 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~ 220 (691)
+-|..+|..+|+-+... .++++.+.++++...-+..+..|..-+..-.+..+++..+++|.+-.. -++..|..-|..
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~Y 95 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSY 95 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 45677888888777655 788888888888776555778888888888888888888888877533 256666666654
Q ss_pred H
Q 040394 221 Y 221 (691)
Q Consensus 221 ~ 221 (691)
-
T Consensus 96 V 96 (656)
T KOG1914|consen 96 V 96 (656)
T ss_pred H
Confidence 3
No 124
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.34 E-value=0.0067 Score=64.19 Aligned_cols=492 Identities=11% Similarity=0.072 Sum_probs=255.7
Q ss_pred HhcCCChHHHHHHhccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHcccCChhHHH
Q 040394 90 YGSFGHVKYARSVFDSMPN---PDFYSFQVMIRWYFLNDLYKDIVEFYKCMRKRLKEHDNFVFSKVLKACCELRDIDEGM 166 (691)
Q Consensus 90 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 166 (691)
+.|.|+.++|..+++.... .|..+...+-..|...++.++|..+|+..... -|+......+..+|.+.+++.+-.
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQ 130 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQ 130 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888876643 46667888888888888999999999888775 466777777778888877776655
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHhHhcC-C---------hHHHHHHHhccCCCC--hh---hHHHHHHHHHhCCChhHHH
Q 040394 167 KVHCEIVKVGGPDSFVLTGLVDMYAKCR-D---------IGSSRQVFDETLDKN--VV---SWTSMIAGYVQNDCAQEGL 231 (691)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~---------~~~A~~~~~~~~~~~--~~---~~~~li~~~~~~g~~~~A~ 231 (691)
++-=++-+.-+.++..+=++++.+...- . ..-|.+.++.+.+.+ .. -.-.-...+...|++++|+
T Consensus 131 kaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal 210 (932)
T KOG2053|consen 131 KAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEAL 210 (932)
T ss_pred HHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHH
Confidence 4444444443445555555555554431 1 223444555544332 11 1111223345677888888
Q ss_pred HHHH-HHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHH----------------hc
Q 040394 232 VLFN-RMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIGIEINSHLVTALLDMYV----------------KC 294 (691)
Q Consensus 232 ~~~~-~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~----------------~~ 294 (691)
+++. ...+.-...+...-+--+..+...+++.+..++-.++...|.. | |...++.++ ..
T Consensus 211 ~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~ 286 (932)
T KOG2053|consen 211 EFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND-D---YKIYTDSVFKLLELLNKEPAEAAHSLS 286 (932)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc-c---hHHHHHHHHHHHHhcccccchhhhhhh
Confidence 8883 3333333334444455666777888888888888888887643 2 222222211 11
Q ss_pred CCHHHHHHHHHhcCC-CChhHHHHHHHHHH---hcCCchhHHHHHHHhhHCCCCCcHHHHHHHHHHHhcCCChhhHHHHH
Q 040394 295 GNIRDARSVFDELCS-IDLVSWTAMIVGYT---QSGYPDKALKLFTDKKWADFFPNHVTIASVLSASAQLGNLNMGRMVH 370 (691)
Q Consensus 295 g~~~~A~~~~~~~~~-~~~~~~~~li~~~~---~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 370 (691)
+..+...+..++... .....|-+-+..+. .-|+.+++.-.|-+ +-|-+| .|..=+..|...=..+.-..++
T Consensus 287 ~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~--kfg~kp---cc~~Dl~~yl~~l~~~q~~~l~ 361 (932)
T KOG2053|consen 287 KSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFK--KFGDKP---CCAIDLNHYLGHLNIDQLKSLM 361 (932)
T ss_pred hhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHH--HhCCCc---HhHhhHHHhhccCCHHHHHHHH
Confidence 223333333332211 12222333333333 34666665433322 112222 1111111122111222222222
Q ss_pred HHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHH-HHHHhhhCC------CCCCHH---------HHH
Q 040394 371 SLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWN-SIISGLDDN------VSPDAV---------TLV 434 (691)
Q Consensus 371 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~li~~~~~~------~~p~~~---------~~~ 434 (691)
........... .-...+..+.-.-........+..|+.....++. .++..|.+| .-|+.. +.+
T Consensus 362 ~~l~~~~~~~s-~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~ 440 (932)
T KOG2053|consen 362 SKLVLADDDSS-GDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVN 440 (932)
T ss_pred HHhhccCCcch-hhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHH
Confidence 22222211100 0000000000000111222223333333333332 333334333 333433 345
Q ss_pred HHHHHHhccCcHH---HHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC----CHhHHHHHHHHH
Q 040394 435 SVISACASLGAVQ---VGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMREK----NTVTWSAMIGGY 507 (691)
Q Consensus 435 ~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~ 507 (691)
.|+..+.+.++.. +|.-+++...... +.+..+--.++..|+-.|-+..|.++|+.+.-+ |...|-+ ..-+
T Consensus 441 ~Lid~~rktnd~~~l~eaI~LLE~glt~s--~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~-~~~~ 517 (932)
T KOG2053|consen 441 HLIDLWRKTNDLTDLFEAITLLENGLTKS--PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI-FRRA 517 (932)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHhhcC--CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHH-HHHH
Confidence 6778888887754 5666667666666 778888888999999999999999999988744 3333332 3445
Q ss_pred hcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHH---HHchhhcCCCCChhHHHHHHHHHHhcCCh
Q 040394 508 GMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCF---YSMCRDFKFVPSMKHYVCMVDLLARAGRL 584 (691)
Q Consensus 508 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~---~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 584 (691)
...|++..+...+....+. +.-+..----+|....+.|.+....+.. +++ ....-.....+-+..++.++..++.
T Consensus 518 ~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL-~~S~q~~a~~VE~~~l~ll~~~~~~ 595 (932)
T KOG2053|consen 518 ETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRL-MHSLQKWACRVENLQLSLLCNADRG 595 (932)
T ss_pred HhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCcH
Confidence 5567777777776665542 1111111112223223455555544432 222 1111111234556677888889999
Q ss_pred HHHHHHHHhCCCCC
Q 040394 585 EEALEFMENMPIEP 598 (691)
Q Consensus 585 ~~A~~~~~~~~~~p 598 (691)
+.-...+..|..+|
T Consensus 596 ~q~~~~~~~~~l~~ 609 (932)
T KOG2053|consen 596 TQLLKLLESMKLPP 609 (932)
T ss_pred HHHHHHHhccccCc
Confidence 99888888885443
No 125
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.33 E-value=7e-05 Score=67.63 Aligned_cols=154 Identities=10% Similarity=0.162 Sum_probs=113.1
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHH
Q 040394 473 LNFYAKCGDAQSARMVFDAMREKNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGW 552 (691)
Q Consensus 473 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 552 (691)
+.+|...|+++.+....+.+..+. ..+...++.++++..+++..+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456778888877655554333221 11223566777888888877753 556677878888899999999999
Q ss_pred HHHHHchhhcCCCCC-hhHHHHHHHHH-HhcCC--hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040394 553 KCFYSMCRDFKFVPS-MKHYVCMVDLL-ARAGR--LEEALEFMENM-PIEP-DVSLFGAFLHGCGLYSRFDLGEVMIKKM 626 (691)
Q Consensus 553 ~~~~~m~~~~~~~p~-~~~~~~li~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 626 (691)
..|++.. .+.|+ ...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+...|++++|+..|+++
T Consensus 94 ~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQAL---QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999664 45665 67777777764 67677 59999999998 4455 5568888888899999999999999999
Q ss_pred HhcCCCCchhHH
Q 040394 627 LELHPDKACYYV 638 (691)
Q Consensus 627 ~~~~p~~~~~~~ 638 (691)
++..|.+..-+.
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 998887654443
No 126
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.31 E-value=6.1e-05 Score=71.07 Aligned_cols=183 Identities=13% Similarity=0.036 Sum_probs=130.1
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCch---hHHHHHHHHHHhcCCHHHHHHHHHhccc--CC-Hh--
Q 040394 427 SPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNV---YVGTALLNFYAKCGDAQSARMVFDAMRE--KN-TV-- 498 (691)
Q Consensus 427 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~-- 498 (691)
......+..+...+...|+++.|...++.+.+.. |.++ ..+..+...+.+.|++++|...++++.+ |+ ..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 4456678888889999999999999999998876 4433 4667788999999999999999999875 32 22
Q ss_pred -HHHHHHHHHhcC--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCCh
Q 040394 499 -TWSAMIGGYGMQ--------GDGGGSLALFSDMLNEEVQPNEV-IFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSM 568 (691)
Q Consensus 499 -~~~~li~~~~~~--------~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~ 568 (691)
++..+..++... |+.++|.+.++++.+. .|+.. ....+..... .. ... .
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~------~~~-~-------- 166 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LR------NRL-A-------- 166 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HH------HHH-H--------
Confidence 455555556544 7889999999999885 45543 2221111100 00 000 0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 040394 569 KHYVCMVDLLARAGRLEEALEFMENM-PI---EP-DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPD 632 (691)
Q Consensus 569 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 632 (691)
.....+...|.+.|++++|+..+++. .. .| ....+..+..++.+.|++++|...++.+....|+
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 01124667788999999999998887 22 23 3468889999999999999999999888776663
No 127
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.28 E-value=1.3e-05 Score=68.01 Aligned_cols=94 Identities=15% Similarity=0.216 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhC
Q 040394 570 HYVCMVDLLARAGRLEEALEFMENM-PIEP-DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASD 647 (691)
Q Consensus 570 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 647 (691)
....+...+...|++++|.+.++.. ...| +...|..+...+...|++++|...++++.+..|+++..+..++.+|...
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 3444555566666666666666665 2222 4455666666666666666666666666666666666666666666666
Q ss_pred CCcHHHHHHHHHHHhC
Q 040394 648 GRWIRVNQVRELMKQR 663 (691)
Q Consensus 648 g~~~~A~~~~~~~~~~ 663 (691)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 99 GEPESALKALDLAIEI 114 (135)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 7777776666666654
No 128
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.27 E-value=5.6e-05 Score=67.91 Aligned_cols=160 Identities=11% Similarity=0.111 Sum_probs=122.8
Q ss_pred CHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHH
Q 040394 496 NTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMV 575 (691)
Q Consensus 496 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 575 (691)
|... ..+-..+...|+-+....+....... ..-|............+.|++..|...+++.. . .-++|...|+.+.
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~-~-l~p~d~~~~~~lg 141 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA-R-LAPTDWEAWNLLG 141 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHh-c-cCCCChhhhhHHH
Confidence 3444 55667777788888887777765442 23344455557778888999999999998763 2 2445588999999
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHH
Q 040394 576 DLLARAGRLEEALEFMENM-PIEP-DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRV 653 (691)
Q Consensus 576 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 653 (691)
-+|.+.|+.++|..-|.+. .+.| +....+.|...+.-.||.+.|+.++..+....+.++.+-..|+.+....|++++|
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHH
Confidence 9999999999998877776 4444 4467788888888899999999999998888888888888999999999999999
Q ss_pred HHHHHH
Q 040394 654 NQVREL 659 (691)
Q Consensus 654 ~~~~~~ 659 (691)
..+...
T Consensus 222 ~~i~~~ 227 (257)
T COG5010 222 EDIAVQ 227 (257)
T ss_pred Hhhccc
Confidence 877644
No 129
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.24 E-value=4.3e-05 Score=78.11 Aligned_cols=188 Identities=14% Similarity=0.176 Sum_probs=159.0
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 040394 463 SSNVYVGTALLNFYAKCGDAQSARMVFDAMREKNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSAC 542 (691)
Q Consensus 463 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 542 (691)
||-...-..+...+...|-..+|..+|+++. .|.-.+.+|+..|+..+|..+..+-.+ -+||...|..+.+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 6666677788899999999999999999865 677889999999999999999998887 489999999998888
Q ss_pred cccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 040394 543 SHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENM-PIEP-DVSLFGAFLHGCGLYSRFDLGE 620 (691)
Q Consensus 543 ~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~ 620 (691)
...--++.|.++.+....+ .-..+.....+.++++++.+.|+.- ...| ...+|-.+..+..+.+++..|.
T Consensus 468 ~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 8888889999998865222 2222333345578999999998875 4444 4568888888888999999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCCC
Q 040394 621 VMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRGL 665 (691)
Q Consensus 621 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 665 (691)
+.|.....++|++...|+.++.+|.+.|+..+|...+++..+.+.
T Consensus 540 ~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 540 KAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred HHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999999999884
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.21 E-value=0.00019 Score=70.32 Aligned_cols=110 Identities=11% Similarity=0.144 Sum_probs=58.2
Q ss_pred hcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChH
Q 040394 508 GMQGDGGGSLALFSDMLNEEVQPNEVIFTTILS-ACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLE 585 (691)
Q Consensus 508 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~ 585 (691)
...|++++|+..++.++.. .|+...|..+.. .+.+.++.++|.+.+++++ ...|+ ....-.+..+|.+.|++.
T Consensus 317 ~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHHHHHHHHhcCChH
Confidence 3445555566666655553 444444444333 4555566666666665443 23454 333444555566666666
Q ss_pred HHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040394 586 EALEFMENM--PIEPDVSLFGAFLHGCGLYSRFDLGEVM 622 (691)
Q Consensus 586 ~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 622 (691)
+|+.+++.. ..+.|+..|..|.++|...|+..++...
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A 430 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA 430 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH
Confidence 666655555 3334455566666666666655555443
No 131
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=0.00018 Score=64.15 Aligned_cols=156 Identities=12% Similarity=0.088 Sum_probs=77.3
Q ss_pred HHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcC
Q 040394 504 IGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTIL-SACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAG 582 (691)
Q Consensus 504 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 582 (691)
+-+....|+.+-|..+++++..+ + |.+.-...+= --+...|.+++|.++++.+..+ -+.|..++---+-+.-..|
T Consensus 59 ~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 59 FIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcC
Confidence 33444455555555555555543 2 3332111111 1223345555566655555433 1222444444444444555
Q ss_pred ChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCC---CcHHHHHHH
Q 040394 583 RLEEALEFMENM--PIEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDG---RWIRVNQVR 657 (691)
Q Consensus 583 ~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~ 657 (691)
+.-+|++-+... .+..|...|..+...|...|++++|.-.+++++=..|-++.++..++.++.-.| +++-|.++|
T Consensus 135 K~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy 214 (289)
T KOG3060|consen 135 KNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYY 214 (289)
T ss_pred CcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 555555544444 344555566666666666666666666666666666665555555555554443 444455555
Q ss_pred HHHHhC
Q 040394 658 ELMKQR 663 (691)
Q Consensus 658 ~~~~~~ 663 (691)
.+.++.
T Consensus 215 ~~alkl 220 (289)
T KOG3060|consen 215 ERALKL 220 (289)
T ss_pred HHHHHh
Confidence 555543
No 132
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.20 E-value=2.2e-05 Score=65.54 Aligned_cols=97 Identities=5% Similarity=-0.017 Sum_probs=84.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 040394 568 MKHYVCMVDLLARAGRLEEALEFMENM-PIEP-DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYA 645 (691)
Q Consensus 568 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 645 (691)
....-.+...+...|++++|.++|+-. .+.| +..-|-.|..++...|++++|+..|..+..++|+++..+..++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 334445666778999999999999998 4555 45677888888889999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHhCC
Q 040394 646 SDGRWIRVNQVRELMKQRG 664 (691)
Q Consensus 646 ~~g~~~~A~~~~~~~~~~g 664 (691)
..|+.+.|++-|+..+...
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 9999999999999887744
No 133
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.16 E-value=0.00015 Score=65.23 Aligned_cols=150 Identities=12% Similarity=0.011 Sum_probs=84.5
Q ss_pred HHHhcCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHH
Q 040394 355 SASAQLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLV 434 (691)
Q Consensus 355 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~ 434 (691)
..+...|+-+....+........+.+..+....+....+.|++..|...+.+.... -++|..+|+
T Consensus 74 ~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l---------------~p~d~~~~~ 138 (257)
T COG5010 74 TALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL---------------APTDWEAWN 138 (257)
T ss_pred HHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc---------------CCCChhhhh
Confidence 34444454444444444443333334445555666666666666666666665543 345556666
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHhHHHHHHHHHhcCC
Q 040394 435 SVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE---KNTVTWSAMIGGYGMQG 511 (691)
Q Consensus 435 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~ 511 (691)
.+.-+|.+.|+.+.|..-|.+..+.. +.++..++.+...|.-.|+.+.|..++..... .|...-..+.......|
T Consensus 139 ~lgaaldq~Gr~~~Ar~ay~qAl~L~--~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g 216 (257)
T COG5010 139 LLGAALDQLGRFDEARRAYRQALELA--PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQG 216 (257)
T ss_pred HHHHHHHHccChhHHHHHHHHHHHhc--cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcC
Confidence 66666666666666666666666555 45555566666666666666666666655442 24455555555555666
Q ss_pred ChHHHHHHHH
Q 040394 512 DGGGSLALFS 521 (691)
Q Consensus 512 ~~~~A~~~~~ 521 (691)
++++|..+..
T Consensus 217 ~~~~A~~i~~ 226 (257)
T COG5010 217 DFREAEDIAV 226 (257)
T ss_pred ChHHHHhhcc
Confidence 6666655544
No 134
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.16 E-value=3.8e-05 Score=76.09 Aligned_cols=122 Identities=16% Similarity=0.116 Sum_probs=92.2
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHh
Q 040394 535 FTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENM-P-IEPDVSLFGAFLHGCGL 612 (691)
Q Consensus 535 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~ 612 (691)
...++..+...++++.|..+++++.+. .|+ ....++..+...++..+|++++++. . .+.|...+..-...|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 344555666677788888888877433 244 3345677777777778888887777 3 33355556555666788
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHH
Q 040394 613 YSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMK 661 (691)
Q Consensus 613 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 661 (691)
.++++.|..+.+++.+..|++..+|..|+.+|...|++++|.-.++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999998888765
No 135
>PLN02789 farnesyltranstransferase
Probab=98.16 E-value=0.0013 Score=63.99 Aligned_cols=233 Identities=12% Similarity=0.052 Sum_probs=158.8
Q ss_pred HHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCH-HHHHHHHHHHhccC-cHHHHHHHHHHHHHcCCC
Q 040394 385 NALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDA-VTLVSVISACASLG-AVQVGSSLHAYSTKQGLL 462 (691)
Q Consensus 385 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~ 462 (691)
..+-..+...+..++|+.+..++... .|+. .+|..--..+...| +++++...++.+.+..
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~l----------------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-- 102 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRL----------------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-- 102 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHH----------------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--
Confidence 44445566677888888888887653 3443 34555555555666 6799999999999887
Q ss_pred CCchhHHHHHHHHHHhcCCH--HHHHHHHHhccc---CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 040394 463 SSNVYVGTALLNFYAKCGDA--QSARMVFDAMRE---KNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTT 537 (691)
Q Consensus 463 ~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 537 (691)
|.+..+++.....+.+.|+. +++..+++.+.+ .|..+|+.....+...|+++++++.++++++.+.. |...|+.
T Consensus 103 pknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~ 181 (320)
T PLN02789 103 PKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQ 181 (320)
T ss_pred CcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHH
Confidence 67777777666666666763 677888877775 47788998888889999999999999999997633 3444554
Q ss_pred HHHHhccc---CC----HHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhc----CChHHHHHHHHhC-CCCC-CHHHH
Q 040394 538 ILSACSHT---GM----VGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARA----GRLEEALEFMENM-PIEP-DVSLF 603 (691)
Q Consensus 538 ll~~~~~~---g~----~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~----g~~~~A~~~~~~~-~~~p-~~~~~ 603 (691)
....+.+. |. .+++.++..+++ ...|+ ...|+.+..++... ++..+|.+++.+. ...| +....
T Consensus 182 R~~vl~~~~~l~~~~~~~e~el~y~~~aI---~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al 258 (320)
T PLN02789 182 RYFVITRSPLLGGLEAMRDSELKYTIDAI---LANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFAL 258 (320)
T ss_pred HHHHHHhccccccccccHHHHHHHHHHHH---HhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHH
Confidence 44444333 22 245667765543 34565 77888888888773 3456788887776 3333 56678
Q ss_pred HHHHHHHHhcC------------------CHHHHHHHHHHHHhcCCCCchhHHH
Q 040394 604 GAFLHGCGLYS------------------RFDLGEVMIKKMLELHPDKACYYVL 639 (691)
Q Consensus 604 ~~l~~~~~~~g------------------~~~~A~~~~~~~~~~~p~~~~~~~~ 639 (691)
..|+..|+... ..++|..+++.+.+.+|=-..+|..
T Consensus 259 ~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~~ 312 (320)
T PLN02789 259 SDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYWAW 312 (320)
T ss_pred HHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHHHH
Confidence 88888887532 2366777777775566654455543
No 136
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=0.00066 Score=61.16 Aligned_cols=161 Identities=12% Similarity=0.063 Sum_probs=106.1
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 040394 232 VLFNRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNIRDARSVFDELCSID 311 (691)
Q Consensus 232 ~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 311 (691)
++.+.+.......+......-...|++.+++++|.+..... . +......=+..+.+..+++-|...+++|.+-|
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~----~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id 167 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG----E--NLEAAALNVQILLKMHRFDLAEKELKKMQQID 167 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc----c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 34444444444444344444455677778888887776552 1 22333333445667778888888888886643
Q ss_pred -hhHHHHHHHHHHh----cCCchhHHHHHHHhhHCCCCCcHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCchhHHHH
Q 040394 312 -LVSWTAMIVGYTQ----SGYPDKALKLFTDKKWADFFPNHVTIASVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVINA 386 (691)
Q Consensus 312 -~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 386 (691)
-.+.+.|..++.+ .+.+.+|.-+|++|-++ ..|+..+.+....++...|++++|..+++........++.+...
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N 246 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN 246 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 3455555555543 45678888888888764 67888888888888888888888888888888888876666666
Q ss_pred HHHHhHhcCChHH
Q 040394 387 LVDMYAKCHVIAD 399 (691)
Q Consensus 387 l~~~~~~~g~~~~ 399 (691)
++-+-...|...+
T Consensus 247 liv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 247 LIVLALHLGKDAE 259 (299)
T ss_pred HHHHHHHhCCChH
Confidence 6655555554433
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.11 E-value=0.0004 Score=68.14 Aligned_cols=175 Identities=14% Similarity=0.051 Sum_probs=121.9
Q ss_pred CHHHHHHHHHhccc------CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHH
Q 040394 481 DAQSARMVFDAMRE------KNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKC 554 (691)
Q Consensus 481 ~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~ 554 (691)
++.++...-+.++. ++...+...+.+......-..+..++.+-.+. .-...-|..-+ .+...|.+++|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHH
Confidence 44555555566553 24445555555444333323333222222221 11122233333 34567899999999
Q ss_pred HHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 040394 555 FYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEFMENM-PIEPD-VSLFGAFLHGCGLYSRFDLGEVMIKKMLELHP 631 (691)
Q Consensus 555 ~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 631 (691)
++.+... .|+ +.......+.+.+.++.++|.+.++++ ...|+ ...+..+..++.+.|+..+|+.++++....+|
T Consensus 329 l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p 405 (484)
T COG4783 329 LQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP 405 (484)
T ss_pred HHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 9988644 566 556667788999999999999999998 66777 56778888999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhCCCcHHHHHHHHHHH
Q 040394 632 DKACYYVLVSNLYASDGRWIRVNQVRELMK 661 (691)
Q Consensus 632 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 661 (691)
+++..|..|+..|...|+..+|.....+..
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 999999999999998887777766655543
No 138
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.09 E-value=0.00036 Score=75.07 Aligned_cols=129 Identities=7% Similarity=0.017 Sum_probs=103.0
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-cchHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHH
Q 040394 110 DFYSFQVMIRWYFLNDLYKDIVEFYKCMRKRLKEHD-NFVFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVD 188 (691)
Q Consensus 110 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 188 (691)
+...+-.|..+..+.|++++|..+|+...+. .|+ ......+...+.+.+++++|....++.....+.+......+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 4677888888888888888888888888875 454 4566777788888888888888888888888888888888888
Q ss_pred HhHhcCChHHHHHHHhccCCCC---hhhHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 040394 189 MYAKCRDIGSSRQVFDETLDKN---VVSWTSMIAGYVQNDCAQEGLVLFNRMREG 240 (691)
Q Consensus 189 ~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 240 (691)
++.+.|++++|..+|++...++ ..++..+...+-..|+.++|...|++..+.
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888888888888876442 457777777888888888888888887653
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.09 E-value=5.2e-05 Score=75.13 Aligned_cols=120 Identities=10% Similarity=0.112 Sum_probs=52.9
Q ss_pred HHHHHhcCCChHHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHcccCChhHH
Q 040394 86 LVSMYGSFGHVKYARSVFDSMPNPDFYSFQVMIRWYFLNDLYKDIVEFYKCMRKRLKEHDNFVFSKVLKACCELRDIDEG 165 (691)
Q Consensus 86 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 165 (691)
|+..+...++++.|..+|+++.+.+......+++.+...++-.+|++++++..+. .+.+...+..-.+.+.+.++.+.|
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHH
Confidence 3344444444444444444444433333444444444444444444444444433 122223333333334444444444
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhcc
Q 040394 166 MKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDET 206 (691)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 206 (691)
.++.+++.+..|.+-.+|..|..+|.+.|++++|+..++.+
T Consensus 254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 254 LEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 44444444444444444444444444444444444444443
No 140
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.07 E-value=6.5e-06 Score=50.50 Aligned_cols=33 Identities=27% Similarity=0.474 Sum_probs=26.6
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC
Q 040394 213 SWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGN 245 (691)
Q Consensus 213 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 245 (691)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888887776
No 141
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.03 E-value=6.6e-06 Score=62.78 Aligned_cols=78 Identities=15% Similarity=0.297 Sum_probs=60.6
Q ss_pred cCChHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHH
Q 040394 581 AGRLEEALEFMENM-PIEP---DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQV 656 (691)
Q Consensus 581 ~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 656 (691)
.|++++|+.+++++ ...| +...+..+..++.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46778888888877 2223 445666688888999999999999988 777787777888889999999999999998
Q ss_pred HHH
Q 040394 657 REL 659 (691)
Q Consensus 657 ~~~ 659 (691)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 875
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.03 E-value=0.00015 Score=62.17 Aligned_cols=115 Identities=13% Similarity=0.103 Sum_probs=63.5
Q ss_pred cCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHH
Q 040394 545 TGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEFMENM-PIEPDV----SLFGAFLHGCGLYSRFDL 618 (691)
Q Consensus 545 ~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~ 618 (691)
.++...+.+.++.+...++-.|- ....-.+...+...|++++|.+.|+.. ...||. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 45555555556655444222211 122233445566666666666666666 222332 233445556666777777
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHH
Q 040394 619 GEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELM 660 (691)
Q Consensus 619 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 660 (691)
|...++.. ...+-.+..+...+.+|.+.|++++|+..|+..
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77777552 222333556667777777777777777777653
No 143
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.00 E-value=0.00019 Score=60.85 Aligned_cols=114 Identities=12% Similarity=0.154 Sum_probs=86.7
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 040394 519 LFSDMLNEEVQPNE-VIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVP-SMKHYVCMVDLLARAGRLEEALEFMENM-P 595 (691)
Q Consensus 519 ~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 595 (691)
++++... ..|+. .....+...+...|++++|.+.++.+.. ..| +...+..+...+.+.|++++|.+.+++. .
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA---YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445554 34543 3455556677888999999999987743 234 4677888888899999999999988887 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhH
Q 040394 596 IEP-DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYY 637 (691)
Q Consensus 596 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 637 (691)
..| +...+..+...+...|++++|...++++++..|++....
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 344 567788888889999999999999999999999976544
No 144
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.00 E-value=1e-05 Score=49.66 Aligned_cols=33 Identities=30% Similarity=0.624 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCC
Q 040394 499 TWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPN 531 (691)
Q Consensus 499 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 531 (691)
+||+++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888999999999999999999988888887
No 145
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.96 E-value=0.00011 Score=60.71 Aligned_cols=94 Identities=10% Similarity=0.043 Sum_probs=53.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---chhHHHHHH
Q 040394 571 YVCMVDLLARAGRLEEALEFMENM-PIEPD----VSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDK---ACYYVLVSN 642 (691)
Q Consensus 571 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~ 642 (691)
+..++..+.+.|++++|.+.++.+ ...|+ ...+..+...+.+.|+++.|...++++....|++ +.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334445555566666666665555 22222 2344445556666666666666666666665554 344556666
Q ss_pred HHHhCCCcHHHHHHHHHHHhCC
Q 040394 643 LYASDGRWIRVNQVRELMKQRG 664 (691)
Q Consensus 643 ~~~~~g~~~~A~~~~~~~~~~g 664 (691)
++.+.|++++|...++++.+..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHC
Confidence 6666666666666666666543
No 146
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.95 E-value=2.8e-05 Score=56.70 Aligned_cols=65 Identities=14% Similarity=0.074 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCC-CcHHHHHHHHHHHhC
Q 040394 599 DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDG-RWIRVNQVRELMKQR 663 (691)
Q Consensus 599 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 663 (691)
+..+|..+...+...|++++|+..|+++++.+|+++..+..++.+|...| ++++|++.+++.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 45788889999999999999999999999999999999999999999999 799999999988763
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.95 E-value=8.7e-05 Score=58.25 Aligned_cols=94 Identities=20% Similarity=0.290 Sum_probs=77.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCC
Q 040394 571 YVCMVDLLARAGRLEEALEFMENM-PIEP-DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDG 648 (691)
Q Consensus 571 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 648 (691)
+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|...+++..+..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455667778889999999888887 3344 34677778888888899999999999999999998888999999999999
Q ss_pred CcHHHHHHHHHHHhCC
Q 040394 649 RWIRVNQVRELMKQRG 664 (691)
Q Consensus 649 ~~~~A~~~~~~~~~~g 664 (691)
++++|...++...+.+
T Consensus 83 ~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 83 KYEEALEAYEKALELD 98 (100)
T ss_pred hHHHHHHHHHHHHccC
Confidence 9999999998877643
No 148
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.95 E-value=1.5e-05 Score=48.36 Aligned_cols=33 Identities=18% Similarity=0.341 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC
Q 040394 212 VSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEG 244 (691)
Q Consensus 212 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 244 (691)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 456666666666666666666666666666655
No 149
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.92 E-value=1.7e-05 Score=48.13 Aligned_cols=33 Identities=30% Similarity=0.579 Sum_probs=26.7
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCC
Q 040394 498 VTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQP 530 (691)
Q Consensus 498 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 530 (691)
.+|++++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888776
No 150
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=0.0046 Score=55.50 Aligned_cols=151 Identities=12% Similarity=0.003 Sum_probs=87.9
Q ss_pred CCchhHHHHHHHhhHC---C-CCCcHHH-HHHHHHHHhcCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHH
Q 040394 326 GYPDKALKLFTDKKWA---D-FFPNHVT-IASVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADA 400 (691)
Q Consensus 326 g~~~~a~~~~~~m~~~---g-~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 400 (691)
.+.++.++++.+++.. | ..|+..+ |-.+.-+....|+.+.|...++.+.+.-+.+..+-..-...+-..|++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 4556666666665432 3 4455544 333444566667777777777776666555666555555566667777888
Q ss_pred HHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcC
Q 040394 401 RYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCG 480 (691)
Q Consensus 401 ~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 480 (691)
.++++.+.+.| +.|.+++-.-+...-..|+.-+|.+-+....+.- ..|...|.-+...|...|
T Consensus 106 ~e~y~~lL~dd---------------pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--~~D~EAW~eLaeiY~~~~ 168 (289)
T KOG3060|consen 106 IEYYESLLEDD---------------PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--MNDQEAWHELAEIYLSEG 168 (289)
T ss_pred HHHHHHHhccC---------------cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHhHh
Confidence 88887777664 3444555544444444555555555555544443 455556666666666666
Q ss_pred CHHHHHHHHHhcc
Q 040394 481 DAQSARMVFDAMR 493 (691)
Q Consensus 481 ~~~~A~~~~~~~~ 493 (691)
+++.|.-.++++.
T Consensus 169 ~f~kA~fClEE~l 181 (289)
T KOG3060|consen 169 DFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHHHHHH
Confidence 6666655555544
No 151
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.90 E-value=3.5e-05 Score=55.37 Aligned_cols=59 Identities=14% Similarity=0.160 Sum_probs=51.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCC
Q 040394 606 FLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRG 664 (691)
Q Consensus 606 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 664 (691)
+...+...|++++|+..++++++..|+++..+..++.++...|++++|...++++++..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45677889999999999999999999999999999999999999999999999987643
No 152
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.87 E-value=0.028 Score=53.79 Aligned_cols=243 Identities=17% Similarity=0.177 Sum_probs=167.7
Q ss_pred HhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHH
Q 040394 392 AKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDA--VTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVG 469 (691)
Q Consensus 392 ~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 469 (691)
.-.|+.+.|.+-|+.|... |.. .-+..|.-...+.|+.+.|..+-+..-..- +.-....
T Consensus 131 l~eG~~~~Ar~kfeAMl~d-----------------PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A--p~l~WA~ 191 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDD-----------------PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA--PQLPWAA 191 (531)
T ss_pred HhcCchHHHHHHHHHHhcC-----------------hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc--cCCchHH
Confidence 3468888888888888753 322 234455555567889999998888887766 6778888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccc-----CCHh--HHHHHHHHHh---cCCChHHHHHHHHHHHHCCCCCCHHHHH-HH
Q 040394 470 TALLNFYAKCGDAQSARMVFDAMRE-----KNTV--TWSAMIGGYG---MQGDGGGSLALFSDMLNEEVQPNEVIFT-TI 538 (691)
Q Consensus 470 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~--~~~~li~~~~---~~~~~~~A~~~~~~m~~~g~~p~~~~~~-~l 538 (691)
.+.+...+..|+|+.|+++.+.-.. +++. .--.|+.+-. -.-|...|...-.+..+ +.||..--. ..
T Consensus 192 ~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~A 269 (531)
T COG3898 192 RATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVA 269 (531)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHH
Confidence 9999999999999999999987553 3432 1122222211 12345566665555544 577765433 33
Q ss_pred HHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhc
Q 040394 539 LSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENM----PIEPD-VSLFGAFLHGCGLY 613 (691)
Q Consensus 539 l~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~l~~~~~~~ 613 (691)
..++.+.|+..++-.+++.+- +..|.+.++.. ..+.+.|+.. +.-+++. ..+|| ..+...+..+-...
T Consensus 270 Aralf~d~~~rKg~~ilE~aW---K~ePHP~ia~l--Y~~ar~gdta--~dRlkRa~~L~slk~nnaes~~~va~aAlda 342 (531)
T COG3898 270 ARALFRDGNLRKGSKILETAW---KAEPHPDIALL--YVRARSGDTA--LDRLKRAKKLESLKPNNAESSLAVAEAALDA 342 (531)
T ss_pred HHHHHhccchhhhhhHHHHHH---hcCCChHHHHH--HHHhcCCCcH--HHHHHHHHHHHhcCccchHHHHHHHHHHHhc
Confidence 458899999999999999763 34666555433 2345566543 2222222 34454 45677778888899
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhC-CCcHHHHHHHHHHHhC
Q 040394 614 SRFDLGEVMIKKMLELHPDKACYYVLVSNLYASD-GRWIRVNQVRELMKQR 663 (691)
Q Consensus 614 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 663 (691)
|++..|..--+.+....|. ..+|.+++.+-... |+-.++...+-+.++.
T Consensus 343 ~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 343 GEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred cchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 9999999999999999999 77888888887766 9999998888776664
No 153
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=9e-05 Score=68.51 Aligned_cols=112 Identities=13% Similarity=0.147 Sum_probs=93.6
Q ss_pred CCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCchhH
Q 040394 564 FVPS-MKHYVCMVDLLARAGRLEEALEFMENM-PIEP-DVSLFGAFLHGCGL---YSRFDLGEVMIKKMLELHPDKACYY 637 (691)
Q Consensus 564 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~ 637 (691)
-.|+ ...|..|...|.+.|+...|..-|.+. ...| +...+..+..++.. ..+..++..++++++..+|++....
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 3454 889999999999999999999999998 4444 44556666665543 3467899999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHhCCCccCCCeeEEE
Q 040394 638 VLVSNLYASDGRWIRVNQVRELMKQRGLSKSPGCSLVD 675 (691)
Q Consensus 638 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~~ 675 (691)
+.|+..+...|++.+|...++.|++.....+|..+.++
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 99999999999999999999999999888888766543
No 154
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.83 E-value=0.00014 Score=66.68 Aligned_cols=71 Identities=23% Similarity=0.348 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 040394 571 YVCMVDLLARAGRLEEALEFMENM-PIEPDV-SLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVS 641 (691)
Q Consensus 571 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 641 (691)
|..-..+|.+.|.++.|++-.+.. .+.|.. .+|..|..+|...|++++|++.|+++++++|++..+...|-
T Consensus 118 ycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 118 YCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 333444444444444444444433 333332 24555555555555555555555555555555444444443
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.82 E-value=0.0003 Score=58.03 Aligned_cols=105 Identities=6% Similarity=0.051 Sum_probs=71.8
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHH
Q 040394 534 IFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEFMENM-PIEPD----VSLFGAFL 607 (691)
Q Consensus 534 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 607 (691)
++......+...|++++|.+.++.+.....-.|. ...+..+..++.+.|++++|.+.++.+ ...|+ ..++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444555666677777777777776543211111 335556777788888888888888876 32333 45677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchhHH
Q 040394 608 HGCGLYSRFDLGEVMIKKMLELHPDKACYYV 638 (691)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 638 (691)
.++.+.|+.++|...++++++..|+++....
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 8888899999999999999999998765443
No 156
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.81 E-value=0.0011 Score=56.70 Aligned_cols=124 Identities=12% Similarity=0.102 Sum_probs=75.8
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC--hhHHHHH
Q 040394 500 WSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNE---VIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS--MKHYVCM 574 (691)
Q Consensus 500 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~l 574 (691)
|..++..+ ..++...+...++.+.+.. +.+. ...-.+...+...|++++|...|+..... ...|+ ....-.|
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 33334444 3667777777777777652 2221 22223334666778888888888777443 22222 1233446
Q ss_pred HHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040394 575 VDLLARAGRLEEALEFMENMP-IEPDVSLFGAFLHGCGLYSRFDLGEVMIKKM 626 (691)
Q Consensus 575 i~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 626 (691)
...+...|++++|+..++... .......+......+...|++++|...|+++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 677778888888888887752 2234456666777788888888888888765
No 157
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.71 E-value=0.00044 Score=61.29 Aligned_cols=97 Identities=16% Similarity=0.112 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 040394 568 MKHYVCMVDLLARAGRLEEALEFMENM-PIEPD----VSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSN 642 (691)
Q Consensus 568 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 642 (691)
...+..+...+...|++++|...+++. ...|+ ...+..+...+.+.|++++|...++++++..|+++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 334566667777778888888877776 22222 3567777788888888888888888888888888888888888
Q ss_pred HHHhCCC--------------cHHHHHHHHHHHhCC
Q 040394 643 LYASDGR--------------WIRVNQVRELMKQRG 664 (691)
Q Consensus 643 ~~~~~g~--------------~~~A~~~~~~~~~~g 664 (691)
++...|+ +++|.+.+++..+.+
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 8887776 456666666665543
No 158
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.67 E-value=0.00043 Score=69.14 Aligned_cols=105 Identities=10% Similarity=0.122 Sum_probs=87.9
Q ss_pred HHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 040394 539 LSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEFMENM-PIEP-DVSLFGAFLHGCGLYSR 615 (691)
Q Consensus 539 l~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 615 (691)
...+...|++++|++.|++.++ ..|+ ...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 3456678999999999998753 4665 677888899999999999999999998 5555 55688889999999999
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 040394 616 FDLGEVMIKKMLELHPDKACYYVLVSNLYAS 646 (691)
Q Consensus 616 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 646 (691)
+++|+..+++++++.|+++.....+..+..+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999888777665433
No 159
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.66 E-value=6.9e-05 Score=54.43 Aligned_cols=54 Identities=17% Similarity=0.292 Sum_probs=42.4
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCC
Q 040394 611 GLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRG 664 (691)
Q Consensus 611 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 664 (691)
.+.|++++|+..++++.+.+|++..++..++.+|.+.|++++|.++++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 467788888888888888888888888888888888888888888887766543
No 160
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.65 E-value=6.2e-05 Score=44.48 Aligned_cols=29 Identities=34% Similarity=0.587 Sum_probs=19.6
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 040394 213 SWTSMIAGYVQNDCAQEGLVLFNRMREGF 241 (691)
Q Consensus 213 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 241 (691)
+||.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666677777777766666655
No 161
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.61 E-value=0.0002 Score=52.92 Aligned_cols=59 Identities=14% Similarity=0.092 Sum_probs=52.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCCC
Q 040394 607 LHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRGL 665 (691)
Q Consensus 607 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 665 (691)
...+.+.+++++|...++++++.+|+++..+...+.++...|++++|.+.+++..+.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35678889999999999999999999999999999999999999999999999987654
No 162
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.61 E-value=0.00066 Score=59.95 Aligned_cols=93 Identities=12% Similarity=-0.086 Sum_probs=74.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 040394 568 MKHYVCMVDLLARAGRLEEALEFMENM-PIEPD----VSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSN 642 (691)
Q Consensus 568 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 642 (691)
...+..++..+...|++++|+..+++. ...|+ ..+|..+...+...|++++|+..++++++..|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 455666777788889999999988887 33332 3478888899999999999999999999999999888888888
Q ss_pred HHH-------hCCCcHHHHHHHHHH
Q 040394 643 LYA-------SDGRWIRVNQVRELM 660 (691)
Q Consensus 643 ~~~-------~~g~~~~A~~~~~~~ 660 (691)
++. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 888888665555443
No 163
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.61 E-value=0.001 Score=51.54 Aligned_cols=82 Identities=13% Similarity=0.041 Sum_probs=69.1
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHhCCC-CCChhhHHHHHHHHHccC--------ChhhHHHHHHHHHHHCCCCchHH
Q 040394 213 SWTSMIAGYVQNDCAQEGLVLFNRMREGFV-EGNQITLGSLVTACAKLR--------ALHQGKWLHGYILKIGIEINSHL 283 (691)
Q Consensus 213 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~t~~~li~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~ 283 (691)
+-...|..+...+++.....+|+.++++|+ .|+..+|+.++.+.++.. ++.....+++.|+..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445566777778999999999999999999 999999999999987543 34566788999999999999999
Q ss_pred HHHHHHHHHhc
Q 040394 284 VTALLDMYVKC 294 (691)
Q Consensus 284 ~~~li~~~~~~ 294 (691)
|+.++..+.+.
T Consensus 107 Ynivl~~Llkg 117 (120)
T PF08579_consen 107 YNIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHHh
Confidence 99999887653
No 164
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.58 E-value=8.6e-05 Score=43.83 Aligned_cols=30 Identities=27% Similarity=0.548 Sum_probs=23.0
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHCCC
Q 040394 499 TWSAMIGGYGMQGDGGGSLALFSDMLNEEV 528 (691)
Q Consensus 499 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 528 (691)
+|++++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677778888888888888888888777663
No 165
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.55 E-value=0.097 Score=51.00 Aligned_cols=78 Identities=13% Similarity=0.151 Sum_probs=35.5
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHH
Q 040394 473 LNFYAKCGDAQSARMVFDAMREKNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGW 552 (691)
Q Consensus 473 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 552 (691)
+.-+...|+...|.++-.+..-|+...|-..+.+++..++|++-..+... . -++..|-.++.+|.+.|...+|.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHHHHCCCHHHHH
Confidence 33344445555555555555445555555555555555555444433221 1 11234444444444455555554
Q ss_pred HHHH
Q 040394 553 KCFY 556 (691)
Q Consensus 553 ~~~~ 556 (691)
.+..
T Consensus 258 ~yI~ 261 (319)
T PF04840_consen 258 KYIP 261 (319)
T ss_pred HHHH
Confidence 4444
No 166
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.51 E-value=0.00035 Score=64.27 Aligned_cols=88 Identities=10% Similarity=0.140 Sum_probs=77.7
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHH
Q 040394 576 DLLARAGRLEEALEFMENM-PIEPD-VSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRV 653 (691)
Q Consensus 576 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 653 (691)
.-+.+.+++++|+..|.+. .+.|. .+.|..=..+|.+.|.++.|++-.+.++.++|..+..|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4567889999999999988 66764 556666677899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 040394 654 NQVRELMKQR 663 (691)
Q Consensus 654 ~~~~~~~~~~ 663 (691)
++.|++.++.
T Consensus 169 ~~aykKaLel 178 (304)
T KOG0553|consen 169 IEAYKKALEL 178 (304)
T ss_pred HHHHHhhhcc
Confidence 9999887764
No 167
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.51 E-value=0.00031 Score=50.37 Aligned_cols=61 Identities=21% Similarity=0.293 Sum_probs=50.7
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 040394 574 MVDLLARAGRLEEALEFMENM-PIEP-DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKA 634 (691)
Q Consensus 574 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 634 (691)
+...+.+.|++++|++.|++. ...| +...+..+..++...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456788899999999999998 5556 456888899999999999999999999999999864
No 168
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.51 E-value=0.016 Score=49.47 Aligned_cols=133 Identities=11% Similarity=0.092 Sum_probs=99.1
Q ss_pred CCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHH
Q 040394 528 VQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENM-PIEPD---VSLF 603 (691)
Q Consensus 528 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~ 603 (691)
..|+...-..+..+....|+..+|...|++. -.--+.-|..+.-.+..+....+++..|...+++. ...|+ +.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qa-lsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQA-LSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHH-hccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 4677766667778888889999999888876 33224445667777788888888999998888887 22232 2234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHh
Q 040394 604 GAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQ 662 (691)
Q Consensus 604 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 662 (691)
..+.+.+...|.+.+|+..|+.+....|+ +......+..+.++|+..+|..-+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 55778888899999999999999998888 66666667788999988888766655544
No 169
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.48 E-value=0.13 Score=50.69 Aligned_cols=126 Identities=15% Similarity=0.144 Sum_probs=72.7
Q ss_pred HHhcCC-HHHHHHHHHhccc---CCHhHHHHHH----HHHhc---CCChHHHHHHHHHHHHCCCCCCHH----HHHHHHH
Q 040394 476 YAKCGD-AQSARMVFDAMRE---KNTVTWSAMI----GGYGM---QGDGGGSLALFSDMLNEEVQPNEV----IFTTILS 540 (691)
Q Consensus 476 ~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li----~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~ 540 (691)
+-+.|. -+.|+.+++.+.+ -|...-|.+. .+|.+ .....+-+.+-+-..+.|+.|-.. .-|.+.+
T Consensus 389 lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaD 468 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLAD 468 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHH
Confidence 344454 6667777777664 2444333322 22221 233444444444455667666432 3333333
Q ss_pred --HhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHH
Q 040394 541 --ACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENMPIEPDVSLFGAF 606 (691)
Q Consensus 541 --~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 606 (691)
-+...|++.++.-.-..+. .+.|++.+|..+.-.+....++++|.+++...+ |+..++++-
T Consensus 469 AEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~dsk 531 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDSK 531 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHHH
Confidence 2345677777776655552 367888888888777778888888888888764 455555443
No 170
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.47 E-value=0.0013 Score=65.71 Aligned_cols=101 Identities=15% Similarity=0.136 Sum_probs=80.6
Q ss_pred HHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcC
Q 040394 504 IGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAG 582 (691)
Q Consensus 504 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g 582 (691)
...+...|++++|+..|++.++.. +-+...|..+..++...|++++|+..++..+ .+.|+ ...|..+..+|...|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al---~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAI---ELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCcCCHHHHHHHHHHHHHhC
Confidence 566778899999999999999853 3345677777789999999999999999775 35665 678888999999999
Q ss_pred ChHHHHHHHHhC-CCCCCHHHHHHHHH
Q 040394 583 RLEEALEFMENM-PIEPDVSLFGAFLH 608 (691)
Q Consensus 583 ~~~~A~~~~~~~-~~~p~~~~~~~l~~ 608 (691)
++++|+..|++. ...|+.......+.
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999997 66666554444433
No 171
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.47 E-value=0.00018 Score=52.20 Aligned_cols=63 Identities=21% Similarity=0.363 Sum_probs=41.4
Q ss_pred HhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 040394 579 ARAGRLEEALEFMENM-PIEP-DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVS 641 (691)
Q Consensus 579 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 641 (691)
...|++++|++.|+++ ...| +...+..+..+|.+.|++++|..+++++....|+++.++..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 3566777777777776 2233 5556666777777777777777777777777777665555554
No 172
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.0072 Score=58.16 Aligned_cols=86 Identities=15% Similarity=0.105 Sum_probs=52.2
Q ss_pred HHhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcH
Q 040394 578 LARAGRLEEALEFMENM-PIEPD-----VSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWI 651 (691)
Q Consensus 578 ~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 651 (691)
..+.|++.+|.+.+.+. ++.|+ ...|........+.|+.++|+.-.+.+++++|.-...+..-++++...++|+
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e 338 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWE 338 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666665 33333 3334333444456666777777666666666666666666666666667777
Q ss_pred HHHHHHHHHHhC
Q 040394 652 RVNQVRELMKQR 663 (691)
Q Consensus 652 ~A~~~~~~~~~~ 663 (691)
+|.+.+++..+.
T Consensus 339 ~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 339 EAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHhh
Confidence 776666666553
No 173
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.45 E-value=0.14 Score=50.38 Aligned_cols=70 Identities=9% Similarity=0.142 Sum_probs=50.1
Q ss_pred HHHhCCCCC----CHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHH
Q 040394 590 FMENMPIEP----DVSLFGAFLHG--CGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELM 660 (691)
Q Consensus 590 ~~~~~~~~p----~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 660 (691)
++++.|++| +...-|.|..+ +..+|++.++.-.-.-..++.| ++.+|..++.++....+|++|.+++..+
T Consensus 446 fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 446 FITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 344445555 33355555555 4578888888877777777888 4888888888888888888888888654
No 174
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.44 E-value=0.00036 Score=53.15 Aligned_cols=79 Identities=20% Similarity=0.331 Sum_probs=34.9
Q ss_pred CCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHH
Q 040394 510 QGDGGGSLALFSDMLNEEVQ-PNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEA 587 (691)
Q Consensus 510 ~~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 587 (691)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++.. +..|+ ....-.+..++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~----~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL----KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH----THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 35555555555555553211 12233333444555555555555555541 12222 12222334445555555555
Q ss_pred HHHHH
Q 040394 588 LEFME 592 (691)
Q Consensus 588 ~~~~~ 592 (691)
++.++
T Consensus 78 i~~l~ 82 (84)
T PF12895_consen 78 IKALE 82 (84)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55544
No 175
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.43 E-value=0.0045 Score=64.68 Aligned_cols=139 Identities=9% Similarity=0.005 Sum_probs=69.0
Q ss_pred CCHhHHHHHHHHHhc--C---CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhccc--------CCHHHHHHHHHHchh
Q 040394 495 KNTVTWSAMIGGYGM--Q---GDGGGSLALFSDMLNEEVQPNEV-IFTTILSACSHT--------GMVGEGWKCFYSMCR 560 (691)
Q Consensus 495 ~~~~~~~~li~~~~~--~---~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~--------g~~~~A~~~~~~m~~ 560 (691)
.|...|..++++... . ++...|..+|++..+ ..|+.. .+..+..++... +++..+.+..+....
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 466677777766433 2 225567777777777 356653 333322222111 011222222222111
Q ss_pred hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 040394 561 DFKFVPSMKHYVCMVDLLARAGRLEEALEFMENM-PIEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKAC 635 (691)
Q Consensus 561 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 635 (691)
......+...|..+.-.+...|++++|...++++ ...|+...|..+...+...|+.++|.+.++++..++|.+++
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 0011222344555544444556666666666665 44455555666666666666666666666666666666553
No 176
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.40 E-value=0.0064 Score=63.57 Aligned_cols=135 Identities=11% Similarity=0.031 Sum_probs=88.3
Q ss_pred CCCCHHHHHHHHHHhcc--c---CCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhc--------CChHHHHHHHHh
Q 040394 528 VQPNEVIFTTILSACSH--T---GMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARA--------GRLEEALEFMEN 593 (691)
Q Consensus 528 ~~p~~~~~~~ll~~~~~--~---g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~--------g~~~~A~~~~~~ 593 (691)
.+.|...|..++++... . ++...|..+|++.+ ...|+ ...+..+..++... ++...+.+..++
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai---~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEIL---KSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 46666777777775432 2 23667888887654 46777 44444443333221 123455555554
Q ss_pred C----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCCCc
Q 040394 594 M----PIEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRGLS 666 (691)
Q Consensus 594 ~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 666 (691)
. ....+...|..+.......|++++|...++++++++|+ ...|..++.++...|+.++|.+.+++.......
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 3 13334566776666666778888888888888888885 778888888888888888888888888775543
No 177
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.37 E-value=0.0059 Score=58.74 Aligned_cols=133 Identities=12% Similarity=0.164 Sum_probs=77.9
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-hcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHH
Q 040394 499 TWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSA-CSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDL 577 (691)
Q Consensus 499 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~ 577 (691)
+|..++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+. +..+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 45566666666666666777777666432 2223333333322 22345566677777776555 33345556666777
Q ss_pred HHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 040394 578 LARAGRLEEALEFMENM-PIEPDV----SLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKA 634 (691)
Q Consensus 578 ~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 634 (691)
+.+.|+.+.|..+|++. ..-|.. ..|...+.--.+.|+.+.+..+.+++.+..|++.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 77777777777777776 222222 3777777777777888888888888777776643
No 178
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.33 E-value=0.0039 Score=62.36 Aligned_cols=122 Identities=9% Similarity=0.049 Sum_probs=99.6
Q ss_pred CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhccc----CCHh
Q 040394 424 DNVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLL-SSNVYVGTALLNFYAKCGDAQSARMVFDAMRE----KNTV 498 (691)
Q Consensus 424 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~ 498 (691)
++.+.+...+..+++.+....+++.+..++......... ...+.+..++++.|.+.|..+++..++..=.. ||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 356667788888999999999999999998888765210 23455667999999999999999999887554 7999
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccc
Q 040394 499 TWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHT 545 (691)
Q Consensus 499 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 545 (691)
++|.||..+.+.|++..|.++..+|..++...+..|+...+.+|.+-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999999888788888877777766554
No 179
>PRK15331 chaperone protein SicA; Provisional
Probab=97.32 E-value=0.0025 Score=53.79 Aligned_cols=88 Identities=15% Similarity=0.089 Sum_probs=68.5
Q ss_pred HHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHH
Q 040394 575 VDLLARAGRLEEALEFMENM-PI-EPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIR 652 (691)
Q Consensus 575 i~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 652 (691)
..-+...|++++|..+|+-+ -. .-+..-|..|..++...+++++|...|..+..+.++|+......+.+|...|+.+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 33455778888888888776 22 23445567777777778888899988888888888888888888888888899888
Q ss_pred HHHHHHHHHh
Q 040394 653 VNQVRELMKQ 662 (691)
Q Consensus 653 A~~~~~~~~~ 662 (691)
|+.-|+...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 8888887776
No 180
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.32 E-value=0.004 Score=50.42 Aligned_cols=105 Identities=10% Similarity=-0.030 Sum_probs=63.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCC--cchHHHHHHHHcccCChhHHHHHHHHHHHhCCC---ChhHHHHHHHHhH
Q 040394 117 MIRWYFLNDLYKDIVEFYKCMRKRLKEHD--NFVFSKVLKACCELRDIDEGMKVHCEIVKVGGP---DSFVLTGLVDMYA 191 (691)
Q Consensus 117 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~ 191 (691)
+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+++......+. +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34455667777888888887777765543 235556666777777777777777777765443 3344444455566
Q ss_pred hcCChHHHHHHHhccCCCChhhHHHHHHHH
Q 040394 192 KCRDIGSSRQVFDETLDKNVVSWTSMIAGY 221 (691)
Q Consensus 192 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 221 (691)
..|+.++|...+-....++...|.--|..|
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666665544333333444444433
No 181
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.30 E-value=0.0034 Score=55.61 Aligned_cols=129 Identities=9% Similarity=0.040 Sum_probs=80.7
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC--cchHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHH
Q 040394 112 YSFQVMIRWYFLNDLYKDIVEFYKCMRKRLKEHD--NFVFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDM 189 (691)
Q Consensus 112 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 189 (691)
..|..+...+...|++++|...|++..+....+. ...+..+...+.+.|+.++|...++...+..+.+...+..+...
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 3566666777777888888888887776532222 24667777777788888888888888887766677777777777
Q ss_pred hHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC
Q 040394 190 YAKCRDIGSSRQVFDETLDKNVVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRA 261 (691)
Q Consensus 190 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~ 261 (691)
+...|+...+..-++.. ...+++|.+++++.... .|+ .|..++..+...|+
T Consensus 116 ~~~~g~~~~a~~~~~~A-----------------~~~~~~A~~~~~~a~~~--~p~--~~~~~~~~~~~~~~ 166 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEA-----------------EALFDKAAEYWKQAIRL--APN--NYIEAQNWLKTTGR 166 (172)
T ss_pred HHHcCChHhHhhCHHHH-----------------HHHHHHHHHHHHHHHhh--Cch--hHHHHHHHHHhcCc
Confidence 77777655544322211 01245566666666542 222 35555555554443
No 182
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.30 E-value=0.054 Score=50.72 Aligned_cols=174 Identities=10% Similarity=0.012 Sum_probs=103.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhccc--CCH-hH---HHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc-
Q 040394 472 LLNFYAKCGDAQSARMVFDAMRE--KNT-VT---WSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSH- 544 (691)
Q Consensus 472 l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~---~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~- 544 (691)
....+...|++++|...|+.+.. |+. .. .-.++.++.+.+++++|...+++..+....-...-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 44445667888888888888764 321 22 234567777888888888888888875322112233333333221
Q ss_pred -c---------------CCH---HHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH
Q 040394 545 -T---------------GMV---GEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENMPIEPDVSLFGA 605 (691)
Q Consensus 545 -~---------------g~~---~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 605 (691)
. .|. ..|...|+.+ +.-|-...-..+|...+..+...--..- ..
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~l----------------i~~yP~S~ya~~A~~rl~~l~~~la~~e-~~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKL----------------VRGYPNSQYTTDATKRLVFLKDRLAKYE-LS 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHH----------------HHHCcCChhHHHHHHHHHHHHHHHHHHH-HH
Confidence 0 111 2233333333 3333333334444443333311111111 13
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHhCCCcHHHHHHHHHHHh
Q 040394 606 FLHGCGLYSRFDLGEVMIKKMLELHPDKA---CYYVLVSNLYASDGRWIRVNQVRELMKQ 662 (691)
Q Consensus 606 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 662 (691)
+..-|.+.|.+..|..-++.+++..|+.+ .....+...|...|..++|..+...+..
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 45567889999999999999999888765 4567788899999999999998876643
No 183
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.30 E-value=0.0013 Score=51.33 Aligned_cols=91 Identities=11% Similarity=0.154 Sum_probs=45.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhc
Q 040394 114 FQVMIRWYFLNDLYKDIVEFYKCMRKRLKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKC 193 (691)
Q Consensus 114 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (691)
|..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|...++...+..+.+..++..+...+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 3344445555555666666555555432 222234444445555555555555555555554444444444555555555
Q ss_pred CChHHHHHHHhc
Q 040394 194 RDIGSSRQVFDE 205 (691)
Q Consensus 194 g~~~~A~~~~~~ 205 (691)
|++++|...++.
T Consensus 82 ~~~~~a~~~~~~ 93 (100)
T cd00189 82 GKYEEALEAYEK 93 (100)
T ss_pred HhHHHHHHHHHH
Confidence 555555544443
No 184
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.29 E-value=0.21 Score=49.06 Aligned_cols=131 Identities=15% Similarity=0.167 Sum_probs=83.5
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHH-HHHHH
Q 040394 499 TWSAMIGGYGMQGDGGGSLALFSDMLNEE-VQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHY-VCMVD 576 (691)
Q Consensus 499 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~-~~li~ 576 (691)
.|..++..-.+..-.+.|..+|.+..+.| +.++...+++++.-++ .|+...|..+|+.=... -||...| +-.+.
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~kyl~ 474 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKYLL 474 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHHHH
Confidence 45556666666666777777777777777 5566667777766544 46667777777643333 3443332 33455
Q ss_pred HHHhcCChHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 040394 577 LLARAGRLEEALEFMENM--PIEPD--VSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDK 633 (691)
Q Consensus 577 ~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 633 (691)
.+.+-++-+.|..+|+.. .+..+ ..+|..++..-...|+...+..+-+++.+..|..
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 666777777777777754 22222 4577777777777777777777777777777773
No 185
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.28 E-value=0.0054 Score=58.79 Aligned_cols=128 Identities=9% Similarity=0.025 Sum_probs=70.7
Q ss_pred HHHHHHHhcccCCHHHHHHHHHH---chhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-------C-CCCCHHH
Q 040394 535 FTTILSACSHTGMVGEGWKCFYS---MCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEFMENM-------P-IEPDVSL 602 (691)
Q Consensus 535 ~~~ll~~~~~~g~~~~A~~~~~~---m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~~~~ 602 (691)
|..+-..|.-.|+++.|+...+. +.+.+|-... ...+..+.+++.-.|+++.|.+.++.. + -.....+
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 33333444445666666554432 1123332222 345566666677777777777666654 1 1122335
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc----C--CCCchhHHHHHHHHHhCCCcHHHHHHHHHHHh
Q 040394 603 FGAFLHGCGLYSRFDLGEVMIKKMLEL----H--PDKACYYVLVSNLYASDGRWIRVNQVRELMKQ 662 (691)
Q Consensus 603 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 662 (691)
..+|...|.-..++++|+.+..+-+.+ + ......++.|++.|...|..++|..+.+.-++
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 556666666666777777766654431 1 12245666777777777777777666555544
No 186
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.26 E-value=0.0023 Score=60.27 Aligned_cols=93 Identities=13% Similarity=0.098 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---hhHHHHHH
Q 040394 571 YVCMVDLLARAGRLEEALEFMENM-PIEPDV----SLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKA---CYYVLVSN 642 (691)
Q Consensus 571 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~ 642 (691)
|..-+..+.+.|++++|+..|+.+ ...|+. ..+..+...|...|++++|...|+++.+..|+++ ..+..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 333333334455666665555555 222221 2444455666666666666666666666555543 34444555
Q ss_pred HHHhCCCcHHHHHHHHHHHhC
Q 040394 643 LYASDGRWIRVNQVRELMKQR 663 (691)
Q Consensus 643 ~~~~~g~~~~A~~~~~~~~~~ 663 (691)
++...|++++|.++++.+++.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666666553
No 187
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.25 E-value=0.033 Score=54.58 Aligned_cols=161 Identities=14% Similarity=0.146 Sum_probs=94.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcccC-------CHhHHHHHHHHHhc---CCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040394 471 ALLNFYAKCGDAQSARMVFDAMREK-------NTVTWSAMIGGYGM---QGDGGGSLALFSDMLNEEVQPNEVIFTTILS 540 (691)
Q Consensus 471 ~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 540 (691)
.++-.|-...+++...++.+.+... ....-....-++.+ .|+.++|+.++..+....-.++..+|..+-+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444566666666666666666542 11111123344445 6777777777777555555666667666555
Q ss_pred Hhc---------ccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCCh----HHHHHHH---HhC-------CCC
Q 040394 541 ACS---------HTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRL----EEALEFM---ENM-------PIE 597 (691)
Q Consensus 541 ~~~---------~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~----~~A~~~~---~~~-------~~~ 597 (691)
.|- .....+.|+..|. +.+.+.|+...--.++..+.-.|.. .+..++- ... ...
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~---kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYR---KGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHH---HHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 442 1224677887777 5556667643322333333333321 1222221 111 233
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 040394 598 PDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKA 634 (691)
Q Consensus 598 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 634 (691)
.|-..+.+++.++.-.||+++|.+.++++.+..|+..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 4666778888999999999999999999999988743
No 188
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.24 E-value=0.0041 Score=54.81 Aligned_cols=89 Identities=11% Similarity=0.151 Sum_probs=67.9
Q ss_pred cCCHhHHHHHHHHHhc-----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC----------------CHHHHH
Q 040394 494 EKNTVTWSAMIGGYGM-----QGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTG----------------MVGEGW 552 (691)
Q Consensus 494 ~~~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----------------~~~~A~ 552 (691)
.++-.+|..++..+.+ .|..+=....++.|.+-|+.-|..+|+.||+.+=+.. +-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4566677777777654 4777778888899999999999999999998876522 345677
Q ss_pred HHHHHchhhcCCCCChhHHHHHHHHHHhcCC
Q 040394 553 KCFYSMCRDFKFVPSMKHYVCMVDLLARAGR 583 (691)
Q Consensus 553 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 583 (691)
+++++| +.+|+.||..++..+++.+++.+.
T Consensus 124 ~lL~qM-E~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQM-ENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHH-HHcCCCCcHHHHHHHHHHhccccH
Confidence 888888 777888888888888888776654
No 189
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.23 E-value=0.00025 Score=42.57 Aligned_cols=34 Identities=32% Similarity=0.495 Sum_probs=31.2
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHH
Q 040394 622 MIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQ 655 (691)
Q Consensus 622 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 655 (691)
+++++++++|+++..|..++.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3688999999999999999999999999999863
No 190
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.21 E-value=0.033 Score=53.84 Aligned_cols=124 Identities=11% Similarity=0.171 Sum_probs=67.3
Q ss_pred HHHHHhc-CCHHHHHHHHHhcC-----CCC----hhHHHHHHHHHHhcCCchhHHHHHHHhhHCCC-----CCcHH-HHH
Q 040394 288 LDMYVKC-GNIRDARSVFDELC-----SID----LVSWTAMIVGYTQSGYPDKALKLFTDKKWADF-----FPNHV-TIA 351 (691)
Q Consensus 288 i~~~~~~-g~~~~A~~~~~~~~-----~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-----~p~~~-t~~ 351 (691)
...|... |++++|.+.|++.. ... ..++..+...+.+.|++++|.++|++....-. +.+.. .|.
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 3344444 56666666665541 111 12455566677888888888888887665422 22222 223
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHhCCC-----chhHHHHHHHHhHh--cCChHHHHHHHHhCCCCC
Q 040394 352 SVLSASAQLGNLNMGRMVHSLGIRLGLE-----DYTVINALVDMYAK--CHVIADARYIFETTSEKD 411 (691)
Q Consensus 352 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~ 411 (691)
..+-++...|+...|...++......+. ...+...|+.++-. ...++.++.-|+.+..-|
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld 267 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLD 267 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccH
Confidence 3333555567888888888877766543 23445556666654 345677777777776544
No 191
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.19 E-value=0.26 Score=48.10 Aligned_cols=111 Identities=15% Similarity=0.099 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCcHHHHHHHHHHHhcCCC
Q 040394 283 LVTALLDMYVKCGNIRDARSVFDELCSIDLVSWTAMIVGYTQSGYPDKALKLFTDKKWADFFPNHVTIASVLSASAQLGN 362 (691)
Q Consensus 283 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 362 (691)
+.+..|.-+...|+...|.++..+..-|+...|-..+.+++..++|++..++... +-++.-|-.++.+|...|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3445566677788888888888888888888888889999999998887776432 1234667778888888888
Q ss_pred hhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCC
Q 040394 363 LNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTS 408 (691)
Q Consensus 363 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 408 (691)
..+|..+...+. +..-+..|.++|++.+|.+.--+..
T Consensus 253 ~~eA~~yI~k~~---------~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 253 KKEASKYIPKIP---------DEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HHHHHHHHHhCC---------hHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 888887776622 2567788888888888877655443
No 192
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.16 E-value=0.0089 Score=59.85 Aligned_cols=123 Identities=10% Similarity=-0.049 Sum_probs=99.7
Q ss_pred CCCCcHHHHHHHHHHHhcCCChhhHHHHHHHHHHhC--CC-chhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHH
Q 040394 342 DFFPNHVTIASVLSASAQLGNLNMGRMVHSLGIRLG--LE-DYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSI 418 (691)
Q Consensus 342 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l 418 (691)
+...+...+..+++.+....+++.+..++....... .. -+.+..++|+.|.+.|..+.++.+++.=...
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~y-------- 132 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQY-------- 132 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhc--------
Confidence 445577778888888888888888888876665542 22 4455569999999999999999999887766
Q ss_pred HHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhc
Q 040394 419 ISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKC 479 (691)
Q Consensus 419 i~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 479 (691)
|+-||..|++.||..+.+.|++..|.++...|..++. ..++.++..-+.+|.+.
T Consensus 133 ------GiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~-~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 133 ------GIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEE-FDNPSTQALALYSCYKY 186 (429)
T ss_pred ------ccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHHh
Confidence 8999999999999999999999999999999998886 66677776666666655
No 193
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.16 E-value=0.0094 Score=48.28 Aligned_cols=88 Identities=17% Similarity=0.107 Sum_probs=59.0
Q ss_pred HHHHHHhcCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CchhHHHHHHHHH
Q 040394 574 MVDLLARAGRLEEALEFMENM---PIEPD--VSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPD---KACYYVLVSNLYA 645 (691)
Q Consensus 574 li~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~ 645 (691)
+..++-..|+.++|+.+|++. +.... ...+..+...+...|++++|..++++.....|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 344556677777777777766 22222 235556666777778888888888887777777 5556666677777
Q ss_pred hCCCcHHHHHHHHHHH
Q 040394 646 SDGRWIRVNQVRELMK 661 (691)
Q Consensus 646 ~~g~~~~A~~~~~~~~ 661 (691)
..|+.++|.+.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 8888888877765443
No 194
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.16 Score=49.33 Aligned_cols=225 Identities=16% Similarity=0.047 Sum_probs=135.3
Q ss_pred CCHHHHHHHH-HHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHh--------
Q 040394 428 PDAVTLVSVI-SACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMREKNTV-------- 498 (691)
Q Consensus 428 p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------- 498 (691)
|.-.++..+- .++.-.|+.+.|.++--...+.. +.+....-.-..++.-.++.+.|...|++...-|+.
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld--~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~ 243 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD--ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSAS 243 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc--cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHh
Confidence 4444554443 34557789999988888877766 333333222223344567788888888887753322
Q ss_pred -------HHHHHHHHHhcCCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-
Q 040394 499 -------TWSAMIGGYGMQGDGGGSLALFSDMLNE---EVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS- 567 (691)
Q Consensus 499 -------~~~~li~~~~~~~~~~~A~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~- 567 (691)
.|..=..-..+.|++..|.+.|.+.+.. +..|+...|.....+..+.|+.++|+.-.+... .+.|.
T Consensus 244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~sy 320 (486)
T KOG0550|consen 244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSY 320 (486)
T ss_pred hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHH
Confidence 1222234456889999999999999873 344556667777778889999999998887542 34444
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCC---------------HHHHHHHHHHHHh
Q 040394 568 MKHYVCMVDLLARAGRLEEALEFMENM-PIEPD---VSLFGAFLHGCGLYSR---------------FDLGEVMIKKMLE 628 (691)
Q Consensus 568 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~---------------~~~A~~~~~~~~~ 628 (691)
+..|-.-..++...++|++|.+-+++. ....+ ..++.....++.++.+ .+--...-+.++.
T Consensus 321 ikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~ 400 (486)
T KOG0550|consen 321 IKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALV 400 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHH
Confidence 334444445566678899998888886 32222 2344444333432221 1111111222334
Q ss_pred cCCCCch--------hHHHHHHHHHhCCCcHHHHHHH
Q 040394 629 LHPDKAC--------YYVLVSNLYASDGRWIRVNQVR 657 (691)
Q Consensus 629 ~~p~~~~--------~~~~l~~~~~~~g~~~~A~~~~ 657 (691)
.+|+... -+.-++..|...++..+..++.
T Consensus 401 ~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~d 437 (486)
T KOG0550|consen 401 HHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFD 437 (486)
T ss_pred hCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcc
Confidence 5665321 2345777888888888877764
No 195
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.12 E-value=0.0098 Score=57.24 Aligned_cols=127 Identities=13% Similarity=0.090 Sum_probs=96.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHh-cCCHHHHHHHHHhccc---CCHhHHHHHHHH
Q 040394 431 VTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAK-CGDAQSARMVFDAMRE---KNTVTWSAMIGG 506 (691)
Q Consensus 431 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 506 (691)
.+|..+++.+.+.+..+.|..+|.+..+.+ ..+..+|......-.+ .++.+.|.++|+...+ .+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 468888899999999999999999998665 4455666555555333 5677779999998875 477888888999
Q ss_pred HhcCCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHhcccCCHHHHHHHHHHchh
Q 040394 507 YGMQGDGGGSLALFSDMLNEEVQPNE---VIFTTILSACSHTGMVGEGWKCFYSMCR 560 (691)
Q Consensus 507 ~~~~~~~~~A~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 560 (691)
+...++.+.|..+|++.... +.++. ..|...+.--.+.|+++.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999998875 33333 4788888887888999999888887743
No 196
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.09 E-value=0.0062 Score=47.34 Aligned_cols=80 Identities=11% Similarity=0.145 Sum_probs=61.3
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHhcccC--------CHHHHHHHHHHchhhcCCCCChhH
Q 040394 500 WSAMIGGYGMQGDGGGSLALFSDMLNEEV-QPNEVIFTTILSACSHTG--------MVGEGWKCFYSMCRDFKFVPSMKH 570 (691)
Q Consensus 500 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g--------~~~~A~~~~~~m~~~~~~~p~~~~ 570 (691)
-...|..+...+++.....+|+.+...|+ .|+..+|+.++.+.++.. ++-..+.+|+.|. ..+++|+..+
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL-~~~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDIL-SNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHH-HhccCCcHHH
Confidence 34456666667999999999999999999 899999999998776532 2345677888885 4478888888
Q ss_pred HHHHHHHHHh
Q 040394 571 YVCMVDLLAR 580 (691)
Q Consensus 571 ~~~li~~~~~ 580 (691)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8888877654
No 197
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.08 E-value=0.0086 Score=52.83 Aligned_cols=80 Identities=4% Similarity=-0.027 Sum_probs=50.9
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC--CcchHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHH
Q 040394 112 YSFQVMIRWYFLNDLYKDIVEFYKCMRKRLKEH--DNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDM 189 (691)
Q Consensus 112 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 189 (691)
..|..+...+...|++++|+..|++.......| ...++..+...+...|+.++|...++...+..+.....+..+...
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i 115 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 345666666667777777777777776542222 123566666777777777777777777776654455555555555
Q ss_pred hH
Q 040394 190 YA 191 (691)
Q Consensus 190 ~~ 191 (691)
+.
T Consensus 116 ~~ 117 (168)
T CHL00033 116 CH 117 (168)
T ss_pred HH
Confidence 55
No 198
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.06 E-value=0.011 Score=49.75 Aligned_cols=85 Identities=6% Similarity=0.000 Sum_probs=47.2
Q ss_pred HHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhcc--CC-CChhhHHHHHHHHHhCCChhHHH
Q 040394 155 ACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDET--LD-KNVVSWTSMIAGYVQNDCAQEGL 231 (691)
Q Consensus 155 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~-~~~~~~~~li~~~~~~g~~~~A~ 231 (691)
.+...|++++|+.+|+.+...++.+...|..|..++-..|++++|+..|... .+ .|...+-.+..++...|+.+.|.
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~ 123 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAI 123 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHH
Confidence 3345555555555555555555555555555555555556666665555543 12 24455555555566666666666
Q ss_pred HHHHHHHh
Q 040394 232 VLFNRMRE 239 (691)
Q Consensus 232 ~~~~~m~~ 239 (691)
+.|+....
T Consensus 124 ~aF~~Ai~ 131 (157)
T PRK15363 124 KALKAVVR 131 (157)
T ss_pred HHHHHHHH
Confidence 66655443
No 199
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.03 E-value=0.023 Score=54.95 Aligned_cols=123 Identities=11% Similarity=0.165 Sum_probs=50.3
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCC----CC-CcchHHHHHHHHcccCChhHHHHHHHHHHH----hCCC--ChhHHH
Q 040394 116 VMIRWYFLNDLYKDIVEFYKCMRKRLK----EH-DNFVFSKVLKACCELRDIDEGMKVHCEIVK----VGGP--DSFVLT 184 (691)
Q Consensus 116 ~ll~~~~~~~~~~~a~~~~~~m~~~~~----~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~--~~~~~~ 184 (691)
.....|...|++++|.+.|.+..+... +. -...|......+. ..++++|...++...+ .|.+ -...+.
T Consensus 40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k-~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~ 118 (282)
T PF14938_consen 40 KAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK-KGDPDEAIECYEKAIEIYREAGRFSQAAKCLK 118 (282)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344455555555555555554432110 00 0112333333332 2255555555554443 1211 122333
Q ss_pred HHHHHhHhc-CChHHHHHHHhccCC-----CC----hhhHHHHHHHHHhCCChhHHHHHHHHHHh
Q 040394 185 GLVDMYAKC-RDIGSSRQVFDETLD-----KN----VVSWTSMIAGYVQNDCAQEGLVLFNRMRE 239 (691)
Q Consensus 185 ~l~~~~~~~-g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 239 (691)
.+...|... |++++|.+.|++..+ .. ..++..+...+.+.|++++|.++|++...
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 444445554 555555555544311 01 12334444555555555555555555543
No 200
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.00 E-value=0.0032 Score=62.33 Aligned_cols=62 Identities=15% Similarity=0.095 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040394 568 MKHYVCMVDLLARAGRLEEALEFMENM-PIEPDVS----LFGAFLHGCGLYSRFDLGEVMIKKMLEL 629 (691)
Q Consensus 568 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (691)
...++.+..+|...|++++|+..|++. ...|+.. +|..+..+|...|+.++|+..++++++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455666666666666666666666664 5555532 3666666666666666666666666665
No 201
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.98 E-value=0.0019 Score=46.84 Aligned_cols=64 Identities=17% Similarity=0.317 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 040394 568 MKHYVCMVDLLARAGRLEEALEFMENM-PIEP-DVSLFGAFLHGCGLYS-RFDLGEVMIKKMLELHP 631 (691)
Q Consensus 568 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p 631 (691)
...|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456777888888889999998888887 4445 4568888888888888 79999999999998887
No 202
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.98 E-value=0.12 Score=52.89 Aligned_cols=220 Identities=10% Similarity=0.067 Sum_probs=109.6
Q ss_pred cCchhHHHHHHH--HHHhCCCCchhhhHHHHHHhcCCChHHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHH
Q 040394 60 KSTGSLKAFHAL--LIVDGLTNDKCNTKLVSMYGSFGHVKYARSVFDSMPNPDFYSFQVMIRWYFLNDLYKDIVEFYKCM 137 (691)
Q Consensus 60 ~~~~~a~~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 137 (691)
+++...+-+++. +.+.|-.|+.+. +...++-+|++.+|-++|. +.|.-.+|+++|..|
T Consensus 612 Rdl~~L~li~EL~~~k~rge~P~~iL--lA~~~Ay~gKF~EAAklFk------------------~~G~enRAlEmyTDl 671 (1081)
T KOG1538|consen 612 RDLRYLELISELEERKKRGETPNDLL--LADVFAYQGKFHEAAKLFK------------------RSGHENRALEMYTDL 671 (1081)
T ss_pred hccHHHHHHHHHHHHHhcCCCchHHH--HHHHHHhhhhHHHHHHHHH------------------HcCchhhHHHHHHHH
Confidence 444444444443 333444344422 4556677788888888774 567777888888877
Q ss_pred HHcCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhccCCCChhhHHHH
Q 040394 138 RKRLKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDETLDKNVVSWTSM 217 (691)
Q Consensus 138 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 217 (691)
+-. -..+-+...|+.++-..+.+.-.+-.. +..--.+-...+...|+.++|..+.-
T Consensus 672 RMF----------D~aQE~~~~g~~~eKKmL~RKRA~WAr-~~kePkaAAEmLiSaGe~~KAi~i~~------------- 727 (1081)
T KOG1538|consen 672 RMF----------DYAQEFLGSGDPKEKKMLIRKRADWAR-NIKEPKAAAEMLISAGEHVKAIEICG------------- 727 (1081)
T ss_pred HHH----------HHHHHHhhcCChHHHHHHHHHHHHHhh-hcCCcHHHHHHhhcccchhhhhhhhh-------------
Confidence 643 123445556666655555443222110 11111223344455566655544332
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCH
Q 040394 218 IAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNI 297 (691)
Q Consensus 218 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 297 (691)
.+|-.+-+.++-.++-. .+..+...+..-+.+...+..|-++|..|-+. ..+++.+...+++
T Consensus 728 -----d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W 789 (1081)
T KOG1538|consen 728 -----DHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRW 789 (1081)
T ss_pred -----cccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccc
Confidence 22222333333333211 12333444444444555566666666655322 2355566667777
Q ss_pred HHHHHHHHhcCCCChhHHHHHH-------------HHHHhcCCchhHHHHHHHhhHC
Q 040394 298 RDARSVFDELCSIDLVSWTAMI-------------VGYTQSGYPDKALKLFTDKKWA 341 (691)
Q Consensus 298 ~~A~~~~~~~~~~~~~~~~~li-------------~~~~~~g~~~~a~~~~~~m~~~ 341 (691)
++|..+-++.++--...|-.-. ++|.+.|+-.+|.++++++...
T Consensus 790 ~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 790 DEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 7777777666442222222222 3445556666666666655443
No 203
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.97 E-value=0.0058 Score=53.89 Aligned_cols=89 Identities=15% Similarity=0.094 Sum_probs=63.0
Q ss_pred CCChhhHHHHHHHHHhC-----CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc----------------CChhhHH
Q 040394 208 DKNVVSWTSMIAGYVQN-----DCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKL----------------RALHQGK 266 (691)
Q Consensus 208 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~----------------~~~~~a~ 266 (691)
.++..+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.|++.+=+. .+-+-|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 34556666666666543 55555666777777777777888888877776432 2456778
Q ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHhcCC
Q 040394 267 WLHGYILKIGIEINSHLVTALLDMYVKCGN 296 (691)
Q Consensus 267 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 296 (691)
+++++|...|+-||..++..+++.+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 888888888888888888888888866553
No 204
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.96 E-value=0.0017 Score=41.90 Aligned_cols=42 Identities=17% Similarity=0.263 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 040394 601 SLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSN 642 (691)
Q Consensus 601 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 642 (691)
.+|..+...|...|++++|+++++++++..|+++..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357788899999999999999999999999999998887764
No 205
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.93 E-value=0.2 Score=46.91 Aligned_cols=67 Identities=6% Similarity=0.040 Sum_probs=43.4
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCc-chH---HHHHHHHcccCChhHHHHHHHHHHHhCCC
Q 040394 110 DFYSFQVMIRWYFLNDLYKDIVEFYKCMRKRLKEHDN-FVF---SKVLKACCELRDIDEGMKVHCEIVKVGGP 178 (691)
Q Consensus 110 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 178 (691)
+...+......+...|++++|++.|+++...- |+. ... -.+..++-+.++.++|...+++.++..|.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 33334344555566788888888888887752 322 221 33446667788888888888888887765
No 206
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.90 E-value=0.049 Score=46.54 Aligned_cols=96 Identities=10% Similarity=0.053 Sum_probs=45.1
Q ss_pred CCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCC-ChhHHHHHHHHhHhcCChHHHHHHHhccCC-----CChhhHHHH
Q 040394 144 HDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGP-DSFVLTGLVDMYAKCRDIGSSRQVFDETLD-----KNVVSWTSM 217 (691)
Q Consensus 144 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l 217 (691)
|++..-..+..++...|+..+|...|++...--+. |....-.+.++....+++..|...++++.+ +.+.+.-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 33333344444444555555555555544432222 444444455555555555555555544422 122333344
Q ss_pred HHHHHhCCChhHHHHHHHHHHh
Q 040394 218 IAGYVQNDCAQEGLVLFNRMRE 239 (691)
Q Consensus 218 i~~~~~~g~~~~A~~~~~~m~~ 239 (691)
.+.+...|++.+|..-|+....
T Consensus 167 aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHH
Confidence 4555555555555555555544
No 207
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.87 E-value=0.15 Score=52.29 Aligned_cols=41 Identities=12% Similarity=0.109 Sum_probs=28.2
Q ss_pred chhHHHHHHHhhHCCCCCcHHHHHHHHHHHhcCCChhhHHHHHH
Q 040394 328 PDKALKLFTDKKWADFFPNHVTIASVLSASAQLGNLNMGRMVHS 371 (691)
Q Consensus 328 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 371 (691)
+-+.+.-+++|+++|-.|+.... ...|+-.|++.+|.++|.
T Consensus 616 ~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk 656 (1081)
T KOG1538|consen 616 YLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFK 656 (1081)
T ss_pred HHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHH
Confidence 44556667888999988988644 334566777777766654
No 208
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=0.075 Score=48.18 Aligned_cols=129 Identities=16% Similarity=0.129 Sum_probs=91.7
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCC------ChhHHHHH
Q 040394 113 SFQVMIRWYFLNDLYKDIVEFYKCMRKRLKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGP------DSFVLTGL 186 (691)
Q Consensus 113 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l 186 (691)
.-+.+++.+...+.+.-..+++++.++...+.++.....+.+.-.+.||.+.|...|++..+.... ...+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 456677777778888888888888888766667777777888888888998888888877654321 33333444
Q ss_pred HHHhHhcCChHHHHHHHhccCCC---ChhhHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 040394 187 VDMYAKCRDIGSSRQVFDETLDK---NVVSWTSMIAGYVQNDCAQEGLVLFNRMREGF 241 (691)
Q Consensus 187 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 241 (691)
...|.-.+++.+|...+++++.. |+..-|.-.-+..-.|+..+|++.++.|++..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 45566678888888888877653 44455554445555788888888888887743
No 209
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.83 E-value=0.41 Score=50.97 Aligned_cols=175 Identities=13% Similarity=0.080 Sum_probs=116.3
Q ss_pred hhhHHHHHHhcCCChHHHHHHhccCCCCCcchHHHHH----HHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHc
Q 040394 82 CNTKLVSMYGSFGHVKYARSVFDSMPNPDFYSFQVMI----RWYFLNDLYKDIVEFYKCMRKRLKEHDNFVFSKVLKACC 157 (691)
Q Consensus 82 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll----~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 157 (691)
....-+.++.+...++.|..+-..-.. +...-..+. +-+.+.|++++|...|-+-+.. +.| ..+++-|.
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfL 408 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFL 408 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhc
Confidence 345567888888888888888765433 222223333 3346789999999988777654 233 34567777
Q ss_pred ccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhccCCCChh--hHHHHHHHHHhCCChhHHHHHHH
Q 040394 158 ELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDETLDKNVV--SWTSMIAGYVQNDCAQEGLVLFN 235 (691)
Q Consensus 158 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~ 235 (691)
...++..-...++.+.+.|..+..--..|+.+|.+.++.+.-.+..+.... ... -....+..+.+.+-.++|..+-.
T Consensus 409 daq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~~-g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCDK-GEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCCC-cceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 777888888889999999988888888999999999999998888877652 222 23455566666666666665555
Q ss_pred HHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHH
Q 040394 236 RMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYI 272 (691)
Q Consensus 236 ~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~ 272 (691)
.... +......++ -..+++++|.++++.+
T Consensus 488 k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 488 KFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred Hhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 4432 222223232 3456677777666554
No 210
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.83 E-value=0.032 Score=52.72 Aligned_cols=103 Identities=6% Similarity=0.037 Sum_probs=74.2
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHH
Q 040394 533 VIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEFMENM-PIEPD----VSLFGAF 606 (691)
Q Consensus 533 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l 606 (691)
..|...+....+.|++++|...|+.+.+.+.-.+- ...+-.+...|...|++++|...|+.+ ...|+ ...+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 34555554445668888888888888655322111 246667888889999999999988888 22232 3455566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 040394 607 LHGCGLYSRFDLGEVMIKKMLELHPDKAC 635 (691)
Q Consensus 607 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 635 (691)
...+...|+.++|...++++++..|++..
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 77788899999999999999999999653
No 211
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.80 E-value=0.0024 Score=47.72 Aligned_cols=62 Identities=13% Similarity=0.103 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC---CchhHHHHHHHHHhCCCcHHHHHHHHHHHh
Q 040394 601 SLFGAFLHGCGLYSRFDLGEVMIKKMLEL----HPD---KACYYVLVSNLYASDGRWIRVNQVRELMKQ 662 (691)
Q Consensus 601 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 662 (691)
.+++.+...|...|++++|+..+++++++ .++ ...++..++.+|...|++++|.+.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46677777888888888888888888762 222 245677888888888888888888887654
No 212
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.76 E-value=0.006 Score=44.84 Aligned_cols=65 Identities=25% Similarity=0.304 Sum_probs=52.8
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 040394 576 DLLARAGRLEEALEFMENM-PIEP-DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLV 640 (691)
Q Consensus 576 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 640 (691)
..|.+.+++++|++.++.+ ...| +...|......+.+.|++++|...++++++..|+++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 5678889999999999988 4444 456777788889999999999999999999999876655443
No 213
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.76 E-value=0.84 Score=47.01 Aligned_cols=414 Identities=10% Similarity=0.073 Sum_probs=222.9
Q ss_pred hHHHHHHHHHccCChhhHHHHHHHHHHHCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHH
Q 040394 248 TLGSLVTACAKLRALHQGKWLHGYILKIGIEIN-SHLVTALLDMYVKCGNIRDARSVFDELC---SIDLVSWTAMIVGYT 323 (691)
Q Consensus 248 t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 323 (691)
.+..+|.---...+.+.+...+..++.. -|. ..-|......=.+.|..+.+.++|++.. ..++..|.....-+.
T Consensus 47 ~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~ 124 (577)
T KOG1258|consen 47 AWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLK 124 (577)
T ss_pred chHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 3444444433344455555666666543 233 2345566666667788888888888762 235555655554333
Q ss_pred -hcCCchhHHHHHHHhhHC-CCCC-cHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCC-chhHHHHHHHHhHh-----c
Q 040394 324 -QSGYPDKALKLFTDKKWA-DFFP-NHVTIASVLSASAQLGNLNMGRMVHSLGIRLGLE-DYTVINALVDMYAK-----C 394 (691)
Q Consensus 324 -~~g~~~~a~~~~~~m~~~-g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~-----~ 394 (691)
..|+.+...+.|+..+.. |..- ...-|...|.--..+++......+++..++.... -...|.......-. .
T Consensus 125 n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l 204 (577)
T KOG1258|consen 125 NNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKIL 204 (577)
T ss_pred ccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhh
Confidence 345666666666665543 3222 2344555666556667777777777777665544 22223322222222 1
Q ss_pred CChHHHHHHHHhCCCC--------CchhHHHHHHhhhCCCCCCHHH--HHHHHHHHh-------ccCcHHHHHHHHHHHH
Q 040394 395 HVIADARYIFETTSEK--------DVIAWNSIISGLDDNVSPDAVT--LVSVISACA-------SLGAVQVGSSLHAYST 457 (691)
Q Consensus 395 g~~~~a~~~~~~~~~~--------~~~~~~~li~~~~~~~~p~~~~--~~~ll~~~~-------~~~~~~~a~~~~~~~~ 457 (691)
-..+++.++-.....+ ....+..-+... +-+.+..+ .+.+-..+. ...........++.-+
T Consensus 205 ~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~--~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~I 282 (577)
T KOG1258|consen 205 LSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDS--TDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGI 282 (577)
T ss_pred cCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhc--cCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhc
Confidence 2223332222221110 000011100000 00111111 111111111 1111111222222222
Q ss_pred HcC------CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCC
Q 040394 458 KQG------LLSSNVYVGTALLNFYAKCGDAQSARMVFDAMREK---NTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEV 528 (691)
Q Consensus 458 ~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 528 (691)
+.- ..+.....|...+..-.+.|+.+.+.-+|+....| -...|--.+.-....|+.+-|..++....+-..
T Consensus 283 krpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~ 362 (577)
T KOG1258|consen 283 KRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHV 362 (577)
T ss_pred cccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC
Confidence 211 11334567778888888999999999999998865 234555555555556898888888877666433
Q ss_pred C--CCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHH---HHHHhC-CCCCCHH
Q 040394 529 Q--PNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEAL---EFMENM-PIEPDVS 601 (691)
Q Consensus 529 ~--p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~---~~~~~~-~~~p~~~ 601 (691)
+ |....+.+. -+-..|+.+.|..+++.+..+ + |+ ...-..-+....+.|+.+.+. +++... ..+.+..
T Consensus 363 k~~~~i~L~~a~--f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~ 437 (577)
T KOG1258|consen 363 KKTPIIHLLEAR--FEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNG 437 (577)
T ss_pred CCCcHHHHHHHH--HHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcc
Confidence 3 333333332 344578999999999999655 3 66 333334456677889998888 555554 3333333
Q ss_pred HHHHHHHH-----HHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHH---HHHHHHHHHhCCCccCCC
Q 040394 602 LFGAFLHG-----CGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIR---VNQVRELMKQRGLSKSPG 670 (691)
Q Consensus 602 ~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~g~~~~~~ 670 (691)
+...+.-- +...++.+.|..++.++.+..|++...|..+......++...+ -.-+...+....+.++.+
T Consensus 438 i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~d~~e~~~~~~~~~~~~~~~~ 514 (577)
T KOG1258|consen 438 ILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSGREYDLLEPIDWKELKMLIDFDDS 514 (577)
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcchhhhhhhhHHHHHHhhhcccccc
Confidence 33333322 3356899999999999999999999999888888776663322 233344444444444333
No 214
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.55 E-value=1.3 Score=46.35 Aligned_cols=152 Identities=11% Similarity=0.033 Sum_probs=82.6
Q ss_pred cCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChhHHHHHHHHHHhcCCchhHHH
Q 040394 259 LRALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNIRDARSVFDELCSI-----DLVSWTAMIVGYTQSGYPDKALK 333 (691)
Q Consensus 259 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~ 333 (691)
-|++++|++++-+|-++. .-|..+.+.|++-...++++.-... -..+|+.+...+.....+++|.+
T Consensus 747 ~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677776666554432 2345566667776666666554221 12366777777777777777777
Q ss_pred HHHHhhHCCCCCcHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCch
Q 040394 334 LFTDKKWADFFPNHVTIASVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVI 413 (691)
Q Consensus 334 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 413 (691)
.|..-.. . ...+.++.....+++-+. ....-+++....-.+.+++.+.|.-++|.+.|-+...+
T Consensus 818 yY~~~~~------~---e~~~ecly~le~f~~LE~----la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p--- 881 (1189)
T KOG2041|consen 818 YYSYCGD------T---ENQIECLYRLELFGELEV----LARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLP--- 881 (1189)
T ss_pred HHHhccc------h---HhHHHHHHHHHhhhhHHH----HHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCc---
Confidence 6654211 1 112233333333332222 12222336666677777888888888877766554322
Q ss_pred hHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 040394 414 AWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLHAY 455 (691)
Q Consensus 414 ~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 455 (691)
...+..|...+++.+|.++-+.
T Consensus 882 --------------------kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 882 --------------------KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHHHh
Confidence 2334566666666666665543
No 215
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.027 Score=52.56 Aligned_cols=97 Identities=11% Similarity=0.133 Sum_probs=51.4
Q ss_pred CCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcC---ChHHHHHHHhccCC--C-ChhhHHHH
Q 040394 144 HDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCR---DIGSSRQVFDETLD--K-NVVSWTSM 217 (691)
Q Consensus 144 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~--~-~~~~~~~l 217 (691)
-|...|-.|-..|...|+.+.|..-|....+..++++..+..+..++.... +..++..+|++... | |+.+-..|
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 344555555555555555555555555555555555555555555444332 23445555555432 2 34444445
Q ss_pred HHHHHhCCChhHHHHHHHHHHhC
Q 040394 218 IAGYVQNDCAQEGLVLFNRMREG 240 (691)
Q Consensus 218 i~~~~~~g~~~~A~~~~~~m~~~ 240 (691)
...+...|++.+|...|+.|.+.
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhc
Confidence 55555666666666666666553
No 216
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.52 E-value=0.2 Score=40.24 Aligned_cols=140 Identities=12% Similarity=0.108 Sum_probs=84.8
Q ss_pred hcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHH
Q 040394 508 GMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEA 587 (691)
Q Consensus 508 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 587 (691)
.-.|..++..+++.+.... .+..-+|.+|--....-+-+-..++++.+ |--.|. ..+|+....
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsI----GkiFDi----------s~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSI----GKIFDI----------SKCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHH----GGGS-G----------GG-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHH----hhhcCc----------hhhcchHHH
Confidence 3467777888888777752 34444555544333333334444555544 333332 235566666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCCCc
Q 040394 588 LEFMENMPIEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRGLS 666 (691)
Q Consensus 588 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 666 (691)
...+-.++ .+....+..+..+..+|+-++-.+++..+.+.+..+|.....++.+|.+.|+..++.+++++.-+.|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 66655554 234455667788889999999999999988655555899999999999999999999999999999985
No 217
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.47 E-value=0.021 Score=52.60 Aligned_cols=83 Identities=8% Similarity=0.091 Sum_probs=53.4
Q ss_pred HhcCChHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHhCC
Q 040394 579 ARAGRLEEALEFMENM-------PIEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDK---ACYYVLVSNLYASDG 648 (691)
Q Consensus 579 ~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g 648 (691)
.+.|++.+|...|... ...||..-| |..++...|+++.|...|..+.+-.|++ |..+..|+.+..+.|
T Consensus 152 ~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~ 229 (262)
T COG1729 152 YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLG 229 (262)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhc
Confidence 3455566666666555 133444444 6677777777777777777777755544 355667777777777
Q ss_pred CcHHHHHHHHHHHhC
Q 040394 649 RWIRVNQVRELMKQR 663 (691)
Q Consensus 649 ~~~~A~~~~~~~~~~ 663 (691)
+.++|..+|+++.++
T Consensus 230 ~~d~A~atl~qv~k~ 244 (262)
T COG1729 230 NTDEACATLQQVIKR 244 (262)
T ss_pred CHHHHHHHHHHHHHH
Confidence 777777777777654
No 218
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.44 E-value=0.073 Score=44.03 Aligned_cols=89 Identities=13% Similarity=0.115 Sum_probs=63.3
Q ss_pred HHHHHhcCChHHHHHHHHhC--CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch---hHHHHHHHHHh
Q 040394 575 VDLLARAGRLEEALEFMENM--PIE---PDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKAC---YYVLVSNLYAS 646 (691)
Q Consensus 575 i~~~~~~g~~~~A~~~~~~~--~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~ 646 (691)
.....+.|++++|.+.|+.+ ..+ -....-..|+.++.+.+++++|...+++.++++|.++. .++..+.++.+
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 34456788899998888888 111 23346667888999999999999999999999988763 45555555555
Q ss_pred CCC---------------cHHHHHHHHHHHhC
Q 040394 647 DGR---------------WIRVNQVRELMKQR 663 (691)
Q Consensus 647 ~g~---------------~~~A~~~~~~~~~~ 663 (691)
+.. ..+|...|+.+++.
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 544 55666666666653
No 219
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.34 E-value=0.38 Score=43.84 Aligned_cols=64 Identities=9% Similarity=0.039 Sum_probs=39.3
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCC--CCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCC
Q 040394 115 QVMIRWYFLNDLYKDIVEFYKCMRKRLKE--HDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGP 178 (691)
Q Consensus 115 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 178 (691)
-.....+...|++.+|+..|+.+...-.. -.....-.+..++-+.|+.+.|...++.+++..|.
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~ 74 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN 74 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 33444556778888888888887765211 11234455566777778888888888887776655
No 220
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.33 E-value=1.1 Score=43.38 Aligned_cols=113 Identities=13% Similarity=0.051 Sum_probs=74.2
Q ss_pred cCCHHHHHHHHHhc---CCCChhHHHHHHHH--HHhcCCchhHHHHHHHhhHCCCCCcHHH--HHHHHHHHhcCCChhhH
Q 040394 294 CGNIRDARSVFDEL---CSIDLVSWTAMIVG--YTQSGYPDKALKLFTDKKWADFFPNHVT--IASVLSASAQLGNLNMG 366 (691)
Q Consensus 294 ~g~~~~A~~~~~~~---~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a 366 (691)
.|+-..|.+.-.+- ...|....-.++.+ -.-.|+++.|.+-|+.|... |.... ...|.-...+.|+.+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 45556665555443 23344444444432 34468888888888888752 22221 22223334467888888
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCC
Q 040394 367 RMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSE 409 (691)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 409 (691)
.++-+.....-+.-.......+...+..|+++.|+++.+.-..
T Consensus 174 r~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 174 RHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 8888888887777777788889999999999999999886554
No 221
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.29 E-value=1.9 Score=45.61 Aligned_cols=111 Identities=13% Similarity=0.087 Sum_probs=76.7
Q ss_pred CCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHH
Q 040394 530 PNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENMPIEPDVSLFGAFLHG 609 (691)
Q Consensus 530 p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 609 (691)
-...+.+--+.-+...|+..+|.++-.+. --||...|..-+.+++..+++++-+++-+++.. +.-|.-++.+
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~F-----kipdKr~~wLk~~aLa~~~kweeLekfAkskks---PIGy~PFVe~ 753 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDF-----KIPDKRLWWLKLTALADIKKWEELEKFAKSKKS---PIGYLPFVEA 753 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhc-----CCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC---CCCchhHHHH
Confidence 33344555556666778888888877665 247777888888888888888887777776642 3456667788
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHH
Q 040394 610 CGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQV 656 (691)
Q Consensus 610 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 656 (691)
|.+.|+.++|..++-+.-.+. -...+|.+.|++.+|.+.
T Consensus 754 c~~~~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 754 CLKQGNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred HHhcccHHHHhhhhhccCChH--------HHHHHHHHhccHHHHHHH
Confidence 888888888887776532221 345677788888887655
No 222
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.26 E-value=0.027 Score=54.28 Aligned_cols=129 Identities=13% Similarity=0.008 Sum_probs=87.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccc---------CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHC----C-CCCC
Q 040394 466 VYVGTALLNFYAKCGDAQSARMVFDAMRE---------KNTVTWSAMIGGYGMQGDGGGSLALFSDMLNE----E-VQPN 531 (691)
Q Consensus 466 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g-~~p~ 531 (691)
...|..|.+.|.-.|+++.|+..-+.-.. .....+..+..++.-.|+++.|.+.|+.-... | -...
T Consensus 195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE 274 (639)
T KOG1130|consen 195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE 274 (639)
T ss_pred cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH
Confidence 45667777788888999998876654221 13346778888899999999999888775432 2 1223
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHchh---hcC-CCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 040394 532 EVIFTTILSACSHTGMVGEGWKCFYSMCR---DFK-FVPSMKHYVCMVDLLARAGRLEEALEFMENM 594 (691)
Q Consensus 532 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 594 (691)
..+..++-..|.-..+++.|+.++.+-.. +.+ ..-....+.+|..+|...|..++|+.+.+..
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 34555666677777788888888764321 111 1122567888899999999999988776554
No 223
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.044 Score=53.24 Aligned_cols=137 Identities=11% Similarity=-0.029 Sum_probs=96.4
Q ss_pred HHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCC
Q 040394 504 IGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGR 583 (691)
Q Consensus 504 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 583 (691)
...|.+.|++..|..-|++.... -. +...-+.++...... .-...+..|.-+|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~--l~-----------~~~~~~~ee~~~~~~---------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF--LE-----------YRRSFDEEEQKKAEA---------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH--hh-----------ccccCCHHHHHHHHH---------HHHHHhhHHHHHHHhhhh
Confidence 45677777888887777776541 00 011111122111111 112356677788889999
Q ss_pred hHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHH-HHHHHHH
Q 040394 584 LEEALEFMENM-P-IEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRV-NQVRELM 660 (691)
Q Consensus 584 ~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~ 660 (691)
+.+|++...+. . .++|....-.=..+|...|+++.|+..|++++++.|+|..+..-|+.+-.+...+.+. .++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888887 3 3456667777788999999999999999999999999999988888877776666555 7888888
Q ss_pred Hh
Q 040394 661 KQ 662 (691)
Q Consensus 661 ~~ 662 (691)
..
T Consensus 353 F~ 354 (397)
T KOG0543|consen 353 FA 354 (397)
T ss_pred hh
Confidence 75
No 224
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.22 E-value=0.0053 Score=45.85 Aligned_cols=61 Identities=18% Similarity=0.297 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040394 569 KHYVCMVDLLARAGRLEEALEFMENM-------P-IEPD-VSLFGAFLHGCGLYSRFDLGEVMIKKMLEL 629 (691)
Q Consensus 569 ~~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (691)
.+++.+...|.+.|++++|++.+++. + ..|+ ..++..+...+...|++++|++.+++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35666666777777777776666665 1 1122 346777888888888888888888887753
No 225
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.22 E-value=0.7 Score=41.75 Aligned_cols=200 Identities=11% Similarity=0.069 Sum_probs=119.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCC--HhHHHHHHHHHhc
Q 040394 432 TLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMREKN--TVTWSAMIGGYGM 509 (691)
Q Consensus 432 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~ 509 (691)
.|.....+|....+++.|...+.+..+.- ..+...|. ....++.|..+.+++.+-+ +..|+--...|..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~y--Ennrslfh-------AAKayEqaamLake~~klsEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGY--ENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHH--HhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 45555667778888999888887776432 22222211 1233455556666665432 2355666778888
Q ss_pred CCChHHHHHHHHHHHH--CCCCCCHH--HHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChH
Q 040394 510 QGDGGGSLALFSDMLN--EEVQPNEV--IFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLE 585 (691)
Q Consensus 510 ~~~~~~A~~~~~~m~~--~g~~p~~~--~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 585 (691)
+|.++.|-..+++.-+ .++.|+.. .|.--+......++...|.+ .+......|.+..+++
T Consensus 104 ~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~e----------------l~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFE----------------LYGKCSRVLVRLEKFT 167 (308)
T ss_pred hCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHH----------------HHHHhhhHhhhhHHhh
Confidence 8888887777766543 22445432 23222222223333333333 3344456677888888
Q ss_pred HHHHHHHhCC-------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCchhHHHHHHHHHhCCCcHHH
Q 040394 586 EALEFMENMP-------IEPDV-SLFGAFLHGCGLYSRFDLGEVMIKKMLE----LHPDKACYYVLVSNLYASDGRWIRV 653 (691)
Q Consensus 586 ~A~~~~~~~~-------~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~~l~~~~~~~g~~~~A 653 (691)
+|-..+.+-+ ..|+. ..+...+-.+....|+..|...++.-.+ ..|++..+...|...| ..|+.+++
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~ 246 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEI 246 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHH
Confidence 8766655541 22333 3455666666777799999999988555 5677777888887664 67888888
Q ss_pred HHHH
Q 040394 654 NQVR 657 (691)
Q Consensus 654 ~~~~ 657 (691)
..++
T Consensus 247 ~kvl 250 (308)
T KOG1585|consen 247 KKVL 250 (308)
T ss_pred HHHH
Confidence 6664
No 226
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.20 E-value=0.43 Score=43.50 Aligned_cols=137 Identities=8% Similarity=-0.059 Sum_probs=93.2
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHH-----H
Q 040394 499 TWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYV-----C 573 (691)
Q Consensus 499 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~-----~ 573 (691)
.-+.++..+.-.|.+.-.+..+.+.++...+-++.....+.+.-.+.||.+.|..+|+...+.. -..|....+ .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~-~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVT-QKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH-hhhhccchhHHHHhh
Confidence 3445666667778888888888888887656667777777778888999999999999774332 233333333 3
Q ss_pred HHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh
Q 040394 574 MVDLLARAGRLEEALEFMENMP--IEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACY 636 (691)
Q Consensus 574 li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 636 (691)
....|.-++++.+|...+.+.. .+.|+...|.=.-+..-.|+...|.+.++.+.+..|.....
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~ 322 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLH 322 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchh
Confidence 3345667788888888888872 22233333333333344678999999999999999884433
No 227
>PRK11906 transcriptional regulator; Provisional
Probab=96.17 E-value=0.093 Score=52.42 Aligned_cols=142 Identities=12% Similarity=0.091 Sum_probs=75.1
Q ss_pred ChHHHHHHHHHHHH-CCCCCCHH-HHHHHHHHhcc---------cCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHH
Q 040394 512 DGGGSLALFSDMLN-EEVQPNEV-IFTTILSACSH---------TGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLA 579 (691)
Q Consensus 512 ~~~~A~~~~~~m~~-~g~~p~~~-~~~~ll~~~~~---------~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~ 579 (691)
..+.|+.+|.+... ....|+.. .|..+..++.. ..+..+|.+..+.. ..+.|+ ......+..++.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rA---veld~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYV---SDITTVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH---HhcCCCCHHHHHHHHHHHH
Confidence 34557777777772 22456543 34433333321 11223344444433 234444 445555555556
Q ss_pred hcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHH--HHHHHHHhCCCcHHHHH
Q 040394 580 RAGRLEEALEFMENM-PIEPDV-SLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYV--LVSNLYASDGRWIRVNQ 655 (691)
Q Consensus 580 ~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~--~l~~~~~~~g~~~~A~~ 655 (691)
-.++.+.|..+|++. ...||. .+|......+.-.|+.++|.+.++++++++|.....-. .....|+..+ .++|++
T Consensus 350 ~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~ 428 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIK 428 (458)
T ss_pred hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHH
Confidence 666677777777776 455543 35555555666677777777777777777776543322 2223444443 344554
Q ss_pred HH
Q 040394 656 VR 657 (691)
Q Consensus 656 ~~ 657 (691)
++
T Consensus 429 ~~ 430 (458)
T PRK11906 429 LY 430 (458)
T ss_pred HH
Confidence 43
No 228
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.07 E-value=1.7 Score=43.02 Aligned_cols=125 Identities=18% Similarity=0.223 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccc-----CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 040394 467 YVGTALLNFYAKCGDAQSARMVFDAMRE-----KNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNE-VIFTTILS 540 (691)
Q Consensus 467 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~ 540 (691)
.++...++...+....+.|..+|-+..+ +++..+++++.-++. |+...|..+|+--... -||. .-.+..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 3444555555666666667777766553 355566666665553 4556666666654332 2333 33334455
Q ss_pred HhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 040394 541 ACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENM 594 (691)
Q Consensus 541 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 594 (691)
-+...++-..|..+|+..+.+..-.--..+|..+|+--..-|+...|..+=++|
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf 528 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERF 528 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHH
Confidence 555666666677777644333211111455666666556666666665555555
No 229
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.97 E-value=2.4 Score=43.84 Aligned_cols=126 Identities=12% Similarity=0.085 Sum_probs=59.0
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcc-hHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHHh
Q 040394 112 YSFQVMIRWYFLNDLYKDIVEFYKCMRKRLKEHDNF-VFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMY 190 (691)
Q Consensus 112 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 190 (691)
..|..++.---+....+.+..++..+... -|... -|.....-=.+.|..+.+.++|++-+..-+-+...|...+..+
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~ 123 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFL 123 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34444444333333334445555555433 22222 1222222223455566666666655543222555555554444
Q ss_pred Hh-cCChHHHHHHHhccCC------CChhhHHHHHHHHHhCCChhHHHHHHHHHHh
Q 040394 191 AK-CRDIGSSRQVFDETLD------KNVVSWTSMIAGYVQNDCAQEGLVLFNRMRE 239 (691)
Q Consensus 191 ~~-~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 239 (691)
+. .|+.+...+.|+.... .....|...|.--..++++.....+|++.++
T Consensus 124 ~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 124 KNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred hccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 43 2445555555554322 1334455555555556666666666666654
No 230
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.93 E-value=0.038 Score=47.31 Aligned_cols=68 Identities=19% Similarity=0.265 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHh-----CCCccCC
Q 040394 602 LFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQ-----RGLSKSP 669 (691)
Q Consensus 602 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~~~~ 669 (691)
....++..+...|++++|...+++++..+|-+...+..+..+|...|+..+|.++|+++.+ -|+.|+|
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 4556677778899999999999999999999999999999999999999999999887743 4665554
No 231
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.92 E-value=1.4 Score=42.54 Aligned_cols=156 Identities=10% Similarity=0.129 Sum_probs=80.3
Q ss_pred hcCCChHHHHHHhccCCC------CCc------chHHHHHHHHHhCCChhHHHHHHHHHHHc--------CCCCCc----
Q 040394 91 GSFGHVKYARSVFDSMPN------PDF------YSFQVMIRWYFLNDLYKDIVEFYKCMRKR--------LKEHDN---- 146 (691)
Q Consensus 91 ~~~g~~~~A~~~~~~~~~------~~~------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--------~~~~~~---- 146 (691)
.++|+++.|..++.+... |+. ..||.-...+.+..+++.|...+++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 466777778777777643 211 12333333333333777777777665432 122222
Q ss_pred -chHHHHHHHHcccCChh---HHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhccCCC---ChhhHHHHHH
Q 040394 147 -FVFSKVLKACCELRDID---EGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDETLDK---NVVSWTSMIA 219 (691)
Q Consensus 147 -~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~ 219 (691)
.++..++.++...+..+ +|..+++.+....+..+.++..-+..+.+.++.+++.+++.+|... ....+..++.
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHH
Confidence 23444555555555433 3555555554444445666666666666677777777777766442 2233444443
Q ss_pred HHH--hCCChhHHHHHHHHHHhCCCCCCh
Q 040394 220 GYV--QNDCAQEGLVLFNRMREGFVEGNQ 246 (691)
Q Consensus 220 ~~~--~~g~~~~A~~~~~~m~~~~~~p~~ 246 (691)
.+. .......+...+..+....+.|..
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 331 122334555555555444444443
No 232
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.91 E-value=1.5 Score=40.88 Aligned_cols=216 Identities=19% Similarity=0.120 Sum_probs=141.0
Q ss_pred CcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc-----CCHhHHHHHHHHHhcCCChHHHHH
Q 040394 444 GAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE-----KNTVTWSAMIGGYGMQGDGGGSLA 518 (691)
Q Consensus 444 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~ 518 (691)
+....+...+...............+......+...+.+..+...+..... .....+......+...++...+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 344445555555554442001356666677777778888887777776542 244556666667777777888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH-HhcccCCHHHHHHHHHHchhhcCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHh
Q 040394 519 LFSDMLNEEVQPNEVIFTTILS-ACSHTGMVGEGWKCFYSMCRDFKFVP----SMKHYVCMVDLLARAGRLEEALEFMEN 593 (691)
Q Consensus 519 ~~~~m~~~g~~p~~~~~~~ll~-~~~~~g~~~~A~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~ 593 (691)
.+.........+. ........ .+...|+++.|...+..... ..| ....+......+...++.++|...+.+
T Consensus 117 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 117 LLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred HHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 8888776433331 12222222 67778888888888887632 233 233344444446677888888888887
Q ss_pred C-CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhC
Q 040394 594 M-PIEPD--VSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQR 663 (691)
Q Consensus 594 ~-~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 663 (691)
. ...++ ...+..+...+...++++.|...+..+....|.....+..++..+...|+++++...+++..+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 193 ALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7 33333 5677777777888888888888888888888876666666666666777788888888777664
No 233
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.89 E-value=1.3 Score=40.26 Aligned_cols=83 Identities=14% Similarity=0.119 Sum_probs=49.3
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHhhHCCCCCcHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCC---chhHHHHHHHHh
Q 040394 315 WTAMIVGYTQSGYPDKALKLFTDKKWADFFPNHVTIASVLSASAQLGNLNMGRMVHSLGIRLGLE---DYTVINALVDMY 391 (691)
Q Consensus 315 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~ 391 (691)
+..++.-|-......+|...+..+... . ...-..+...|.+.|.+..|..-++.+++.-+. .......++.+|
T Consensus 113 ~~~li~~yP~S~y~~~A~~~l~~l~~~---l-a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y 188 (203)
T PF13525_consen 113 FEELIKRYPNSEYAEEAKKRLAELRNR---L-AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAY 188 (203)
T ss_dssp HHHHHHH-TTSTTHHHHHHHHHHHHHH---H-HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCchHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHH
Confidence 444555666666666666555554432 0 111123455677888888888888888877666 445567777888
Q ss_pred HhcCChHHHH
Q 040394 392 AKCHVIADAR 401 (691)
Q Consensus 392 ~~~g~~~~a~ 401 (691)
.+.|..+.+.
T Consensus 189 ~~l~~~~~a~ 198 (203)
T PF13525_consen 189 YKLGLKQAAD 198 (203)
T ss_dssp HHTT-HHHHH
T ss_pred HHhCChHHHH
Confidence 8888777543
No 234
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.80 E-value=0.11 Score=42.63 Aligned_cols=49 Identities=10% Similarity=0.198 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHH
Q 040394 528 VQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVD 576 (691)
Q Consensus 528 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 576 (691)
..|+..+..+++.+|+..|++..|.++.+...+.++++-+..+|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3455555555555555556666666665555555555555555555444
No 235
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.77 E-value=3.6 Score=44.32 Aligned_cols=119 Identities=12% Similarity=0.025 Sum_probs=73.5
Q ss_pred HHHHHHHhHhcCChHHHHHHHhccCCCChh---hHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 040394 183 LTGLVDMYAKCRDIGSSRQVFDETLDKNVV---SWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKL 259 (691)
Q Consensus 183 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 259 (691)
...-++.+++...++-|..+.+.-..+... ....-.+.+.+.|++++|...|-+-... +.| ..+|.-+...
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLda 410 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCH
Confidence 444566667777777777776653322111 2223334456778888888877765432 222 2345555555
Q ss_pred CChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 040394 260 RALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNIRDARSVFDELC 308 (691)
Q Consensus 260 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 308 (691)
.+...-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+...
T Consensus 411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 6666666777777777765 44445678888888888887777776654
No 236
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.76 E-value=3.2 Score=43.61 Aligned_cols=151 Identities=11% Similarity=0.074 Sum_probs=80.5
Q ss_pred CChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhccCCC-----ChhhHHHHHHHHHhCCChhHHHHHH
Q 040394 160 RDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDETLDK-----NVVSWTSMIAGYVQNDCAQEGLVLF 234 (691)
Q Consensus 160 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~ 234 (691)
|++++|++++-++-+.+ .-+..+.+.|||-...++++.-..- -..+|+.+...+.....|++|.+.|
T Consensus 748 g~feeaek~yld~drrD--------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY 819 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRD--------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYY 819 (1189)
T ss_pred cchhHhhhhhhccchhh--------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666665554432 2344555566666666666543221 1235666666666666666666666
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhH
Q 040394 235 NRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNIRDARSVFDELCSIDLVS 314 (691)
Q Consensus 235 ~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 314 (691)
..-... ...+.++.+..++++-+.+-.. ++-+....-.+.+++.+.|.-++|.+.|-+-..|..
T Consensus 820 ~~~~~~---------e~~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pka-- 883 (1189)
T KOG2041|consen 820 SYCGDT---------ENQIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKA-- 883 (1189)
T ss_pred Hhccch---------HhHHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhccCcHH--
Confidence 553210 1233444444443333332222 234555556666777777777777766655544322
Q ss_pred HHHHHHHHHhcCCchhHHHHHHH
Q 040394 315 WTAMIVGYTQSGYPDKALKLFTD 337 (691)
Q Consensus 315 ~~~li~~~~~~g~~~~a~~~~~~ 337 (691)
-+..|...+++.+|.++-+.
T Consensus 884 ---Av~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 884 ---AVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred ---HHHHHHHHHHHHHHHHHHHh
Confidence 23455566666667666554
No 237
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.55 E-value=0.11 Score=51.90 Aligned_cols=65 Identities=11% Similarity=-0.088 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch---hHHHHHHHHHhCCCcHHHHHHHHHHHhC
Q 040394 599 DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKAC---YYVLVSNLYASDGRWIRVNQVRELMKQR 663 (691)
Q Consensus 599 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 663 (691)
+...|+.+..+|.+.|++++|+..++++++++|++.. .|+.++.+|...|+.++|++.+++.++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3445555555555666666666666666666666553 2555556666666666666665555553
No 238
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.54 E-value=2.8 Score=41.51 Aligned_cols=78 Identities=12% Similarity=0.022 Sum_probs=46.7
Q ss_pred ChhHHHHHHHHhHhcCChHHHHHHHhccCCC---C----hhhHHHHHHHHHh---CCChhHHHHHHHHHHhCCCCCChhh
Q 040394 179 DSFVLTGLVDMYAKCRDIGSSRQVFDETLDK---N----VVSWTSMIAGYVQ---NDCAQEGLVLFNRMREGFVEGNQIT 248 (691)
Q Consensus 179 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~t 248 (691)
+..+-..++-.|....+++...++++.+... + ...--...-++.+ .|+.++|++++..+....-.++..|
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 3444445555677777777777777776543 1 1111123334445 6777888888777666556667777
Q ss_pred HHHHHHHH
Q 040394 249 LGSLVTAC 256 (691)
Q Consensus 249 ~~~li~~~ 256 (691)
|..+.+.|
T Consensus 220 ~gL~GRIy 227 (374)
T PF13281_consen 220 LGLLGRIY 227 (374)
T ss_pred HHHHHHHH
Confidence 76666654
No 239
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.49 E-value=0.16 Score=40.60 Aligned_cols=89 Identities=25% Similarity=0.156 Sum_probs=51.6
Q ss_pred HHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHhCCCc
Q 040394 577 LLARAGRLEEALEFMENM-P-IEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKA----CYYVLVSNLYASDGRW 650 (691)
Q Consensus 577 ~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~ 650 (691)
++...|+.+.|++.|.+. . .+.....||.-.+++.-+|+.++|.+-+++++++.-+.. ..|..-+.+|...|+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 345566666666666655 2 223455666666666666666666666666666432211 2344555566666666
Q ss_pred HHHHHHHHHHHhCCC
Q 040394 651 IRVNQVRELMKQRGL 665 (691)
Q Consensus 651 ~~A~~~~~~~~~~g~ 665 (691)
+.|..-|+..-+-|.
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 666666666655543
No 240
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.067 Score=52.02 Aligned_cols=89 Identities=11% Similarity=0.060 Sum_probs=71.5
Q ss_pred HHHHhcCChHHHHHHHHhC--------CCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHH
Q 040394 576 DLLARAGRLEEALEFMENM--------PIE---------PDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYV 638 (691)
Q Consensus 576 ~~~~~~g~~~~A~~~~~~~--------~~~---------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 638 (691)
+.|.+.|++..|...|++. +.+ .-..+++.+..++.+.+++..|+....+.++.+|+|.-..+
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALy 295 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALY 295 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHH
Confidence 3456666666666665553 111 12345677788889999999999999999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHhCC
Q 040394 639 LVSNLYASDGRWIRVNQVRELMKQRG 664 (691)
Q Consensus 639 ~l~~~~~~~g~~~~A~~~~~~~~~~g 664 (691)
.-+.+|...|+++.|+..|+++++..
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 99999999999999999999998853
No 241
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.26 E-value=1.1 Score=46.66 Aligned_cols=114 Identities=14% Similarity=0.075 Sum_probs=70.7
Q ss_pred CCHHHHHHHHHHchhhcCCCCChhHHHH-HHHHHHhcCChHHHHHHHHhCC-CC-----CCHHHHHHHHHHHHhcCCHHH
Q 040394 546 GMVGEGWKCFYSMCRDFKFVPSMKHYVC-MVDLLARAGRLEEALEFMENMP-IE-----PDVSLFGAFLHGCGLYSRFDL 618 (691)
Q Consensus 546 g~~~~A~~~~~~m~~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~~~-~~-----p~~~~~~~l~~~~~~~g~~~~ 618 (691)
.+.+.|.++++.+.+. -|+...|.. -.+.+...|++++|++.|++.- .+ .....+--+.+.+...+++++
T Consensus 247 ~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 4555666666655332 355443332 2334455666677766666541 11 122345556677778889999
Q ss_pred HHHHHHHHHhcCCCCch-hHHHHHHHHHhCCCc-------HHHHHHHHHHHh
Q 040394 619 GEVMIKKMLELHPDKAC-YYVLVSNLYASDGRW-------IRVNQVRELMKQ 662 (691)
Q Consensus 619 A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~-------~~A~~~~~~~~~ 662 (691)
|...+.++.+.+.-+.. +++..+-++...|+. ++|.+.+++...
T Consensus 324 A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 99999998887666444 445666677788888 888888777654
No 242
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.21 E-value=1.2 Score=44.96 Aligned_cols=101 Identities=14% Similarity=0.193 Sum_probs=66.0
Q ss_pred HHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCCH--HHHHHHHHHHH
Q 040394 536 TTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENMP-I-EPDV--SLFGAFLHGCG 611 (691)
Q Consensus 536 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~-~p~~--~~~~~l~~~~~ 611 (691)
..+..++.+.|+.++|++.+++|.+.....-+..+...|+..+...+.+.++..++.+.. + -|.. ..|...+-.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 345556678888888888888886654322234566678888888889998888888873 1 2332 34555443333
Q ss_pred hcCC---------------HHHHHHHHHHHHhcCCCCchh
Q 040394 612 LYSR---------------FDLGEVMIKKMLELHPDKACY 636 (691)
Q Consensus 612 ~~g~---------------~~~A~~~~~~~~~~~p~~~~~ 636 (691)
..+| -..|.+.+.++.+.+|.-+.+
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 3333 234668888888888775444
No 243
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.09 E-value=0.21 Score=45.89 Aligned_cols=98 Identities=11% Similarity=0.094 Sum_probs=74.8
Q ss_pred HHHHHhcc--cCCHhHHHHHHHHHhc-----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCC-----------
Q 040394 486 RMVFDAMR--EKNTVTWSAMIGGYGM-----QGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGM----------- 547 (691)
Q Consensus 486 ~~~~~~~~--~~~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~----------- 547 (691)
+..|.... +.|-.+|-..+..+.. .++++-....++.|.+.|+.-|..+|+.||..+-+..-
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 44455554 4566677777766653 45677777788899999999999999999988765432
Q ss_pred -----HHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCCh
Q 040394 548 -----VGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRL 584 (691)
Q Consensus 548 -----~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 584 (691)
-+=++.++++| +.+|+.||..+-..|+.++.+.+-.
T Consensus 134 HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhcccccc
Confidence 23468899999 8889999999999999999988864
No 244
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.03 E-value=1.6 Score=36.93 Aligned_cols=84 Identities=14% Similarity=0.148 Sum_probs=37.8
Q ss_pred HHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhCCChhHH
Q 040394 151 KVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDETLDKNVVSWTSMIAGYVQNDCAQEG 230 (691)
Q Consensus 151 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 230 (691)
.++..+...+........++.+...+..+...++.++..|++.+ ..+....++. ..+......+++.|.+.+.++++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~~ 88 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEEA 88 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHHH
Confidence 44444444455555555555555544335555555555555432 2222233331 12222333344444445555555
Q ss_pred HHHHHHH
Q 040394 231 LVLFNRM 237 (691)
Q Consensus 231 ~~~~~~m 237 (691)
.-++.++
T Consensus 89 ~~l~~k~ 95 (140)
T smart00299 89 VELYKKD 95 (140)
T ss_pred HHHHHhh
Confidence 5555444
No 245
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.02 E-value=0.3 Score=40.05 Aligned_cols=93 Identities=17% Similarity=0.090 Sum_probs=54.0
Q ss_pred ChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhc--CCCChhHHHHHHHHH
Q 040394 245 NQITLGSLVTACAKLRALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNIRDARSVFDEL--CSIDLVSWTAMIVGY 322 (691)
Q Consensus 245 ~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~ 322 (691)
|..++..+|.++++.|+++....+++..- |+.++... ..+. +..- ..|+..+..+++.+|
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~-------~~~~spl~Pt~~lL~AIv~sf 62 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD-------YPPSSPLYPTSRLLIAIVHSF 62 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc-------cCCCCCCCCCHHHHHHHHHHH
Confidence 45566677777777777776666665443 22211100 0000 1000 235666777777777
Q ss_pred HhcCCchhHHHHHHHhhHC-CCCCcHHHHHHHHH
Q 040394 323 TQSGYPDKALKLFTDKKWA-DFFPNHVTIASVLS 355 (691)
Q Consensus 323 ~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~ 355 (691)
+.+|++..|+++++...+. +++.+..+|..|+.
T Consensus 63 ~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 63 GYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred HhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 7777777777777776554 56666777777776
No 246
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.01 E-value=0.18 Score=46.24 Aligned_cols=97 Identities=11% Similarity=0.092 Sum_probs=70.4
Q ss_pred HHHHhccC--CCChhhHHHHHHHHHhC-----CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC------------
Q 040394 200 RQVFDETL--DKNVVSWTSMIAGYVQN-----DCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLR------------ 260 (691)
Q Consensus 200 ~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~------------ 260 (691)
++.|.... ++|..+|-..+..+... +.++-....++.|.+.|+.-|..+|+.|+..+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 34444444 45677777777766543 455666667888888999999999999888765432
Q ss_pred ----ChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCC
Q 040394 261 ----ALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGN 296 (691)
Q Consensus 261 ----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 296 (691)
+-+-+..++++|...|+.||..+-..|++++.+.+-
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 334577888888888888888888888888877664
No 247
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.96 E-value=0.13 Score=44.09 Aligned_cols=69 Identities=13% Similarity=0.240 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhc---CCCChhHHHHHHHHHHhcCCchhHHHHHHHhhH-----CCCCCcHHHH
Q 040394 282 HLVTALLDMYVKCGNIRDARSVFDEL---CSIDLVSWTAMIVGYTQSGYPDKALKLFTDKKW-----ADFFPNHVTI 350 (691)
Q Consensus 282 ~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~t~ 350 (691)
.+...++..+...|++++|..+.+.+ .+-+...|..+|.+|...|+...|.+.|+.+.. .|+.|+..+-
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34566777788899999999999888 334667899999999999999999999988743 4888888765
No 248
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.90 E-value=0.079 Score=31.60 Aligned_cols=32 Identities=16% Similarity=0.190 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 040394 602 LFGAFLHGCGLYSRFDLGEVMIKKMLELHPDK 633 (691)
Q Consensus 602 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 633 (691)
.|..+...+...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45666777777788888888888877777764
No 249
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.74 E-value=1 Score=46.25 Aligned_cols=158 Identities=5% Similarity=0.037 Sum_probs=102.2
Q ss_pred HHHHhCCChhHHHHHHH--HHHHcCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCCh
Q 040394 119 RWYFLNDLYKDIVEFYK--CMRKRLKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDI 196 (691)
Q Consensus 119 ~~~~~~~~~~~a~~~~~--~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 196 (691)
+...-+++++++.++.. ++... + +..-.+.+++-+-+.|..+.|.++...-. .-.....+.|++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~-i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~-----------~rFeLAl~lg~L 334 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPN-I--PKDQGQSIARFLEKKGYPELALQFVTDPD-----------HRFELALQLGNL 334 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG-----HHHHHHHHHHHHHTT-HHHHHHHSS-HH-----------HHHHHHHHCT-H
T ss_pred HHHHHcCChhhhhhhhhhhhhccc-C--ChhHHHHHHHHHHHCCCHHHHHhhcCChH-----------HHhHHHHhcCCH
Confidence 34455788888776664 22211 1 24457788888888999998888755432 235566788999
Q ss_pred HHHHHHHhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHC
Q 040394 197 GSSRQVFDETLDKNVVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIG 276 (691)
Q Consensus 197 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g 276 (691)
+.|.++.++.. +...|..|.....+.|+++-|.+.|.+... |..++-.|.-.|+.+...++.+.....|
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 99999988876 566999999999999999999999998753 5667777778888887777777766665
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 040394 277 IEINSHLVTALLDMYVKCGNIRDARSVFDEL 307 (691)
Q Consensus 277 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 307 (691)
- ++....++.-.|+.++..+++.+-
T Consensus 404 ~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 D------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred C------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 2 344444455557777666666543
No 250
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.72 E-value=0.91 Score=37.75 Aligned_cols=20 Identities=5% Similarity=0.021 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhcCCCCch
Q 040394 616 FDLGEVMIKKMLELHPDKAC 635 (691)
Q Consensus 616 ~~~A~~~~~~~~~~~p~~~~ 635 (691)
...|..-|++.++..|++..
T Consensus 115 ~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHHHHHHHHHCcCChh
Confidence 66888889999999999643
No 251
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.70 E-value=0.071 Score=31.87 Aligned_cols=32 Identities=16% Similarity=0.206 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 040394 601 SLFGAFLHGCGLYSRFDLGEVMIKKMLELHPD 632 (691)
Q Consensus 601 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 632 (691)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45677777888888888888888888888876
No 252
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.63 E-value=3.7 Score=37.91 Aligned_cols=57 Identities=11% Similarity=0.047 Sum_probs=43.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCch---hHHHHHHHHHhCCCcHHHHHHHHHHHh
Q 040394 606 FLHGCGLYSRFDLGEVMIKKMLELHPDKAC---YYVLVSNLYASDGRWIRVNQVRELMKQ 662 (691)
Q Consensus 606 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~ 662 (691)
+.+-|.+.|.+..|..-++++++..|+.+. .+..+..+|...|..++|...-+-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 445678889999999999999987766554 455667788899999999877655544
No 253
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.36 E-value=2.8 Score=35.40 Aligned_cols=125 Identities=10% Similarity=0.002 Sum_probs=70.1
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHh
Q 040394 501 SAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLAR 580 (691)
Q Consensus 501 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 580 (691)
..++..+...+.+.....+++.+...+ ..+...++.++..|++.+ ..+..+.++. .++.......+..|.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHHH
Confidence 345556666667777777777777665 355566677777666542 3333444431 1223333446666677
Q ss_pred cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 040394 581 AGRLEEALEFMENMPIEPDVSLFGAFLHGCGLY-SRFDLGEVMIKKMLELHPDKACYYVLVSNLYA 645 (691)
Q Consensus 581 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 645 (691)
.+.++++.-++.+++.. ...+..+... ++++.|.+++++ ++++..|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~~------~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGNF------KDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcCH------HHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 77777777777776522 2222233333 677777776665 334556665555443
No 254
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.32 E-value=1.6 Score=41.00 Aligned_cols=139 Identities=5% Similarity=-0.044 Sum_probs=59.5
Q ss_pred HHhcCCChHHHHHHhccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHcccCChhHH
Q 040394 89 MYGSFGHVKYARSVFDSMPN---PDFYSFQVMIRWYFLNDLYKDIVEFYKCMRKRLKEHDNFVFSKVLKACCELRDIDEG 165 (691)
Q Consensus 89 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 165 (691)
.....|++.+|..+|+.... .+...--.+...|...|+++.|..++..+...--.........-|..+.+.....+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 34445555555555544321 223344444555555555555555555544331111111111122223233333322
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhccCCC-----ChhhHHHHHHHHHhCCChh
Q 040394 166 MKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDETLDK-----NVVSWTSMIAGYVQNDCAQ 228 (691)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~ 228 (691)
..+-++. ...+.|......+...+...|+.++|.+.+-.+.++ |...-..|+..+.--|.-+
T Consensus 223 ~~l~~~~-aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 223 QDLQRRL-AADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred HHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 2222222 223345555555555555556665555554444332 3344455555555444333
No 255
>PRK11619 lytic murein transglycosylase; Provisional
Probab=94.28 E-value=9.9 Score=41.47 Aligned_cols=115 Identities=8% Similarity=0.006 Sum_probs=60.8
Q ss_pred CCChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHH
Q 040394 510 QGDGGGSLALFSDMLNEE-VQPNEV--IFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEE 586 (691)
Q Consensus 510 ~~~~~~A~~~~~~m~~~g-~~p~~~--~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 586 (691)
..+.+.|..++....... +.+... ....+.......+..++|...++... ....+......-+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~---~~~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVI---MRSQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcc---cccCCcHHHHHHHHHHHHccCHHH
Confidence 455677777777764432 333322 22222222222222445555555431 112234444445555557788888
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040394 587 ALEFMENMP--IEPDVSLFGAFLHGCGLYSRFDLGEVMIKKML 627 (691)
Q Consensus 587 A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (691)
+...+..|+ ..-...-.--+.+++...|+.++|...|+++.
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 877777772 12222223335566666788888888888763
No 256
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.28 E-value=4.9 Score=37.90 Aligned_cols=123 Identities=12% Similarity=0.038 Sum_probs=74.9
Q ss_pred HHHhcCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHH
Q 040394 355 SASAQLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLV 434 (691)
Q Consensus 355 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~ 434 (691)
......|++.++...++......+.+..+--.++.+|...|+.+.|..++..++.... ........
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~--------------~~~~~~l~ 207 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ--------------DKAAHGLQ 207 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch--------------hhHHHHHH
Confidence 3456678888888888888888888777788899999999999999999999876521 01111111
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc
Q 040394 435 SVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE 494 (691)
Q Consensus 435 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 494 (691)
.-+..+.+.........+-+..-. + |.+...-..+...+...|+.++|.+.+-.+.+
T Consensus 208 a~i~ll~qaa~~~~~~~l~~~~aa-d--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 208 AQIELLEQAAATPEIQDLQRRLAA-D--PDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHh-C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 122222222222222222222222 1 44666666666667777777777666555443
No 257
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.26 E-value=1.5 Score=37.32 Aligned_cols=110 Identities=15% Similarity=0.089 Sum_probs=67.6
Q ss_pred HhcccCCHHHHHHHHHHchhhcCCCCChh-HHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHH
Q 040394 541 ACSHTGMVGEGWKCFYSMCRDFKFVPSMK-HYVCMVDLLARAGRLEEALEFMENM-PIEPDVSLFGAFLHGCGLYSRFDL 618 (691)
Q Consensus 541 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~ 618 (691)
.-...++.+++..+++.+ +. +.|... .-..-...+.+.|++.+|+.+|+.+ ...|....-..|+..|....+-..
T Consensus 19 ~al~~~~~~D~e~lL~AL-rv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDAL-RV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHccCChHHHHHHHHHH-HH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 335667888888888877 33 566632 2222344567889999999999998 445555666667766666555455
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHH
Q 040394 619 GEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQ 655 (691)
Q Consensus 619 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 655 (691)
-...-+++++..|+ +.+...+..+ ........|.+
T Consensus 96 Wr~~A~evle~~~d-~~a~~Lv~~L-l~~~~~~~a~~ 130 (160)
T PF09613_consen 96 WRRYADEVLESGAD-PDARALVRAL-LARADLEPAHE 130 (160)
T ss_pred HHHHHHHHHhcCCC-hHHHHHHHHH-HHhccccchhh
Confidence 56666666666665 5555555333 33334444433
No 258
>PRK15331 chaperone protein SicA; Provisional
Probab=94.22 E-value=0.79 Score=39.09 Aligned_cols=84 Identities=10% Similarity=-0.017 Sum_probs=62.5
Q ss_pred HcccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhcc---CCCChhhHHHHHHHHHhCCChhHHHH
Q 040394 156 CCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDET---LDKNVVSWTSMIAGYVQNDCAQEGLV 232 (691)
Q Consensus 156 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~ 232 (691)
+-..|++++|..+|+.+...++.+..-+..|..++-..+++++|...|... ...|+..+--+..++...|+.+.|..
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHH
Confidence 346788888888888888877777777888888888888888888877642 23455555566677777888888888
Q ss_pred HHHHHHh
Q 040394 233 LFNRMRE 239 (691)
Q Consensus 233 ~~~~m~~ 239 (691)
.|....+
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 8777765
No 259
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.21 E-value=2.5 Score=44.17 Aligned_cols=158 Identities=13% Similarity=0.054 Sum_probs=102.3
Q ss_pred HHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCH-----HHHHHHHHHHhc----cCcHHHHHHHHHH
Q 040394 385 NALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDA-----VTLVSVISACAS----LGAVQVGSSLHAY 455 (691)
Q Consensus 385 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~ 455 (691)
..++....-.|+-+.+++.+.+..+.+ ++.-.. .+|..++..++. ..+.+.+.++++.
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~-------------~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~ 258 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSE-------------NIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEE 258 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccC-------------CcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHH
Confidence 445555566677777766666654432 111111 234444443333 4578899999999
Q ss_pred HHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC-------CHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCC
Q 040394 456 STKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMREK-------NTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEV 528 (691)
Q Consensus 456 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 528 (691)
+.+.- |......-.-.+.+...|++++|.+.|+..... ....+--+...+.-..++++|...|.++.+..
T Consensus 259 ~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s- 335 (468)
T PF10300_consen 259 MLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES- 335 (468)
T ss_pred HHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-
Confidence 98875 444444444567788899999999999975531 22345556677888899999999999999853
Q ss_pred CCCHHHHHHHHHHh-cccCCH-------HHHHHHHHHc
Q 040394 529 QPNEVIFTTILSAC-SHTGMV-------GEGWKCFYSM 558 (691)
Q Consensus 529 ~p~~~~~~~ll~~~-~~~g~~-------~~A~~~~~~m 558 (691)
..+..+|..+..+| ...|+. ++|.++|.+.
T Consensus 336 ~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 336 KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 34445555555433 456666 7788887765
No 260
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.13 E-value=1.1 Score=41.69 Aligned_cols=103 Identities=14% Similarity=0.207 Sum_probs=71.4
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCC-CHHHHHHHH
Q 040394 534 IFTTILSACSHTGMVGEGWKCFYSMCRDFKFVP-SMKHYVCMVDLLARAGRLEEALEFMENM----PIEP-DVSLFGAFL 607 (691)
Q Consensus 534 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~ 607 (691)
.|+..+.. .+.|++..|...|...++.+.-.+ ....+-.|...+...|++++|...|..+ +..| -+..+--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45555543 455678888888887766542111 1345556788888888888888887777 2222 235666677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchhH
Q 040394 608 HGCGLYSRFDLGEVMIKKMLELHPDKACYY 637 (691)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 637 (691)
.+..+.|+.++|...|++..+..|+.+..-
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 778888999999999999999999865443
No 261
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.97 E-value=0.15 Score=32.67 Aligned_cols=40 Identities=15% Similarity=0.158 Sum_probs=24.4
Q ss_pred hHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHH
Q 040394 148 VFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLV 187 (691)
Q Consensus 148 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 187 (691)
++..+...+...|++++|++++++.++..|.|...+..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 3445556666666666666666666666666666555543
No 262
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.94 E-value=0.59 Score=44.23 Aligned_cols=160 Identities=11% Similarity=0.052 Sum_probs=117.2
Q ss_pred hcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHH----HHHHHHHhcCC
Q 040394 508 GMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYV----CMVDLLARAGR 583 (691)
Q Consensus 508 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~----~li~~~~~~g~ 583 (691)
--.|+..+|-..++++.+. .+.|...+...-.+|...|+.+.-...++++... ..||...|. .+.-++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3478888888899999886 5777788888888999999999988888877543 345543333 33345568999
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----chhHHHHHHHHHhCCCcHHHHHHH
Q 040394 584 LEEALEFMENM-PIEP-DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDK----ACYYVLVSNLYASDGRWIRVNQVR 657 (691)
Q Consensus 584 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~ 657 (691)
+++|.+.-++. .+.| |.....+....+.-.|+.+++.+++++-...-... ..-|.+.+..+.+.+.++.|.++|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999998887 4444 45566666677778899999999988755432221 244667788889999999999999
Q ss_pred HHHHhCCCccCCC
Q 040394 658 ELMKQRGLSKSPG 670 (691)
Q Consensus 658 ~~~~~~g~~~~~~ 670 (691)
++=.-....++.+
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 8765544555544
No 263
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.93 E-value=7.8 Score=38.96 Aligned_cols=150 Identities=11% Similarity=-0.031 Sum_probs=80.0
Q ss_pred CHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHhcccCCHHHHHHHHHHchh-hcCCCCChhHH
Q 040394 496 NTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQP---NEVIFTTILSACSHTGMVGEGWKCFYSMCR-DFKFVPSMKHY 571 (691)
Q Consensus 496 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~-~~~~~p~~~~~ 571 (691)
...+|..++..+.+.|+++.|...+.++...+..+ .+.............|+..+|...++.... ...-..+....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 44577778888888888888888888877643221 233344445566677888888888777654 11111111111
Q ss_pred HHHHHHHHhcCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 040394 572 VCMVDLLARAGRLEEALEF-MENMPIEPDVSLFGAFLHGCGLY------SRFDLGEVMIKKMLELHPDKACYYVLVSNLY 644 (691)
Q Consensus 572 ~~li~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 644 (691)
..+...+.. ..+..... ........-...+..+...+... ++.+.+...|+++.+..|+....+..++..+
T Consensus 225 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 225 AELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 111111000 00000000 00000000012233333333333 7889999999999999998888888777766
Q ss_pred HhC
Q 040394 645 ASD 647 (691)
Q Consensus 645 ~~~ 647 (691)
.+.
T Consensus 303 ~~~ 305 (352)
T PF02259_consen 303 DKL 305 (352)
T ss_pred HHH
Confidence 543
No 264
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.78 E-value=1.1 Score=46.07 Aligned_cols=157 Identities=10% Similarity=-0.040 Sum_probs=94.8
Q ss_pred HHHHHhcCCHHHHHHHHH--hcc-cCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHH
Q 040394 473 LNFYAKCGDAQSARMVFD--AMR-EKNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVG 549 (691)
Q Consensus 473 ~~~~~~~g~~~~A~~~~~--~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 549 (691)
.....-.++++++.+... ++. .-+..-.+.++.-+-+.|.++.|+++.+ |..+ -.....+.|+++
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~~---rFeLAl~lg~L~ 335 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVT---------DPDH---RFELALQLGNLD 335 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HHH---HHHHHHHCT-HH
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcC---------ChHH---HhHHHHhcCCHH
Confidence 344455788888766665 222 1134457778888888888888888643 3222 123345678888
Q ss_pred HHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040394 550 EGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENMPIEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLEL 629 (691)
Q Consensus 550 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (691)
.|.++.++. ++...|..|.+...+.|+++-|.+.+++.+ -+..|+-.|...|+.+.-.++.+.+...
T Consensus 336 ~A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 336 IALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 888775533 367789999999999999999999998885 3566677778888887777776665543
Q ss_pred CCCCchhHHHHHHHHHhCCCcHHHHHHHHH
Q 040394 630 HPDKACYYVLVSNLYASDGRWIRVNQVREL 659 (691)
Q Consensus 630 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 659 (691)
.-.+ ....++.-.|+.++-.+++..
T Consensus 403 ~~~n-----~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 403 GDIN-----IAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp T-HH-----HHHHHHHHHT-HHHHHHHHHH
T ss_pred cCHH-----HHHHHHHHcCCHHHHHHHHHH
Confidence 3322 222334455788877777643
No 265
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.70 E-value=1.2 Score=42.71 Aligned_cols=218 Identities=12% Similarity=0.044 Sum_probs=129.5
Q ss_pred CcHHHHHHHHHHHHHcC-CCCCchhHHHHHHHHHHhcCCHHHHHHHHHh----ccc---C--CHhHHHHHHHHHhcCCCh
Q 040394 444 GAVQVGSSLHAYSTKQG-LLSSNVYVGTALLNFYAKCGDAQSARMVFDA----MRE---K--NTVTWSAMIGGYGMQGDG 513 (691)
Q Consensus 444 ~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~----~~~---~--~~~~~~~li~~~~~~~~~ 513 (691)
.+.+.+...|......- -......++..+..+.+..|.+++++..--. ..+ . -...|-.+.+++.+.-++
T Consensus 20 ~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f 99 (518)
T KOG1941|consen 20 NQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEF 99 (518)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555554433221 0012334556677777888887776554321 111 1 123555566666666666
Q ss_pred HHHHHHHHHHHH-CCCCCCH---HHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC----hhHHHHHHHHHHhcCChH
Q 040394 514 GGSLALFSDMLN-EEVQPNE---VIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS----MKHYVCMVDLLARAGRLE 585 (691)
Q Consensus 514 ~~A~~~~~~m~~-~g~~p~~---~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~ 585 (691)
.+++.+-+.-.. .|..|.. ....++-.++...+.++++++.|+...+-..-.-| ..++..|...|.+..+++
T Consensus 100 ~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~ 179 (518)
T KOG1941|consen 100 HKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYE 179 (518)
T ss_pred hhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhh
Confidence 666665544333 2233311 22334555777778888999888866333222222 357888899999999999
Q ss_pred HHHHHHHhC-------CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCC----chhHHHHHHHHHhC
Q 040394 586 EALEFMENM-------PIEPD-----VSLFGAFLHGCGLYSRFDLGEVMIKKMLEL--HPDK----ACYYVLVSNLYASD 647 (691)
Q Consensus 586 ~A~~~~~~~-------~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~----~~~~~~l~~~~~~~ 647 (691)
+|.-+..+. +++-= ..+...|.-++...|....|.+..+++.++ .-.| ......++.+|...
T Consensus 180 Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~ 259 (518)
T KOG1941|consen 180 KALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSR 259 (518)
T ss_pred HHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhc
Confidence 887665554 32211 123344556778899999999999988773 2222 33446788999999
Q ss_pred CCcHHHHHHHHHHH
Q 040394 648 GRWIRVNQVRELMK 661 (691)
Q Consensus 648 g~~~~A~~~~~~~~ 661 (691)
|+.+.|..-|+...
T Consensus 260 gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 260 GDLERAFRRYEQAM 273 (518)
T ss_pred ccHhHHHHHHHHHH
Confidence 99999988776543
No 266
>PRK11906 transcriptional regulator; Provisional
Probab=93.58 E-value=3.7 Score=41.53 Aligned_cols=140 Identities=11% Similarity=0.064 Sum_probs=90.4
Q ss_pred CHHHHHHHHHhcc---cCC---HhHHHHHHHHHhc---------CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccc
Q 040394 481 DAQSARMVFDAMR---EKN---TVTWSAMIGGYGM---------QGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHT 545 (691)
Q Consensus 481 ~~~~A~~~~~~~~---~~~---~~~~~~li~~~~~---------~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 545 (691)
..+.|..+|.+.. +-| ...|..+..++.. ..+..+|.++-++..+.+ +-|......+-.+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 3567888888877 333 5566666554432 223455677777777754 44566666666666777
Q ss_pred CCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHh-CCCCCCHH---HHHHHHHHHHhcCCHHHHH
Q 040394 546 GMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEFMEN-MPIEPDVS---LFGAFLHGCGLYSRFDLGE 620 (691)
Q Consensus 546 g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p~~~---~~~~l~~~~~~~g~~~~A~ 620 (691)
++++.|...|++. ..+.|| ..+|......+.-+|+.++|.+.+++ +...|... .....+..|+.+ ..+.|+
T Consensus 352 ~~~~~a~~~f~rA---~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQA---KIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNI 427 (458)
T ss_pred cchhhHHHHHHHH---hhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhH
Confidence 7888999888854 367888 45566666666778899999988888 46666543 333333344443 566777
Q ss_pred HHHHH
Q 040394 621 VMIKK 625 (691)
Q Consensus 621 ~~~~~ 625 (691)
.++-+
T Consensus 428 ~~~~~ 432 (458)
T PRK11906 428 KLYYK 432 (458)
T ss_pred HHHhh
Confidence 77665
No 267
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.54 E-value=0.28 Score=42.71 Aligned_cols=99 Identities=15% Similarity=0.135 Sum_probs=63.8
Q ss_pred HhcccCCHHHHHHHHHHchhhcCCCCC------hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHh
Q 040394 541 ACSHTGMVGEGWKCFYSMCRDFKFVPS------MKHYVCMVDLLARAGRLEEALEFMENM-PIEPDV-SLFGAFLHGCGL 612 (691)
Q Consensus 541 ~~~~~g~~~~A~~~~~~m~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~ 612 (691)
-+.+.|++++|..-|...+.. .|. ...|..-..++.+.+.++.|++-..+. .+.|.. .....-..+|.+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~---cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES---CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh---CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 456788888888888866433 333 234445556677788888887766665 444432 233333446667
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 040394 613 YSRFDLGEVMIKKMLELHPDKACYYVLVSN 642 (691)
Q Consensus 613 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 642 (691)
...++.|+.-|+++++.+|.........+.
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 778888888888888888886655444443
No 268
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.53 E-value=0.52 Score=39.16 Aligned_cols=86 Identities=9% Similarity=0.058 Sum_probs=47.5
Q ss_pred hcCChHHHHHHHHhC-CCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHH
Q 040394 580 RAGRLEEALEFMENM-PIEPDVSLFG-AFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVR 657 (691)
Q Consensus 580 ~~g~~~~A~~~~~~~-~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 657 (691)
..++++++..++..+ -..|+..-.. .-.+.+...|++++|..++++..+-.|..+..--.++.++...|+.+- ..+-
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~W-r~~A 100 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEW-HVHA 100 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHH-HHHH
Confidence 466777777777776 2334332211 123345567777777777777766666655555566666666665432 2223
Q ss_pred HHHHhCCCc
Q 040394 658 ELMKQRGLS 666 (691)
Q Consensus 658 ~~~~~~g~~ 666 (691)
+.+++.|-.
T Consensus 101 ~~~le~~~~ 109 (153)
T TIGR02561 101 DEVLARDAD 109 (153)
T ss_pred HHHHHhCCC
Confidence 344444443
No 269
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.35 E-value=0.66 Score=39.35 Aligned_cols=96 Identities=11% Similarity=0.105 Sum_probs=65.0
Q ss_pred hHHHHHHHHH---HhcCChHHHHHHHHhC-CCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 040394 569 KHYVCMVDLL---ARAGRLEEALEFMENM-PIEPDVSLFGA-FLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNL 643 (691)
Q Consensus 569 ~~~~~li~~~---~~~g~~~~A~~~~~~~-~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 643 (691)
.+.+.|+..+ .+.++.+++..++..+ -..|....... -.+.+...|++.+|..+++++.+..|..+..--.++.+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3445555544 4678899999998888 35555543322 23456788999999999999888888877777777777
Q ss_pred HHhCCCcHHHHHHHHHHHhCCC
Q 040394 644 YASDGRWIRVNQVRELMKQRGL 665 (691)
Q Consensus 644 ~~~~g~~~~A~~~~~~~~~~g~ 665 (691)
+...|+.+ =..+-+++.+.+-
T Consensus 88 L~~~~D~~-Wr~~A~evle~~~ 108 (160)
T PF09613_consen 88 LYALGDPS-WRRYADEVLESGA 108 (160)
T ss_pred HHHcCChH-HHHHHHHHHhcCC
Confidence 77777653 2333455556554
No 270
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.27 E-value=3 Score=39.71 Aligned_cols=155 Identities=11% Similarity=0.042 Sum_probs=108.7
Q ss_pred HHhcCCHHHHHHHHHhccc---CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHH----HHHHHhcccCCH
Q 040394 476 YAKCGDAQSARMVFDAMRE---KNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFT----TILSACSHTGMV 548 (691)
Q Consensus 476 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~----~ll~~~~~~g~~ 548 (691)
..-.|+..+|...++++.+ .|...++-.-.+|...|+...-...+++..-. ..||...|. .+.-++...|-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3456888888888888876 37788888889999999999999999888764 345553332 233355688999
Q ss_pred HHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHH
Q 040394 549 GEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEFMENMPIEPD------VSLFGAFLHGCGLYSRFDLGEV 621 (691)
Q Consensus 549 ~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~ 621 (691)
++|++.-++. ..+.|+ .-.-.++.+.+.-.|++.++.+++.+-...-+ ...|-...-.+...+.++.|++
T Consensus 192 ~dAEk~A~ra---lqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 192 DDAEKQADRA---LQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred hhHHHHHHhh---ccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 9999988754 244544 34455677888899999999999998731111 1123333344567799999999
Q ss_pred HHHHHH--hcCCCCc
Q 040394 622 MIKKML--ELHPDKA 634 (691)
Q Consensus 622 ~~~~~~--~~~p~~~ 634 (691)
+|++-. ++..++.
T Consensus 269 IyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 269 IYDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHHhhccch
Confidence 998643 3555655
No 271
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.27 E-value=0.16 Score=30.89 Aligned_cols=26 Identities=12% Similarity=0.155 Sum_probs=20.1
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHH
Q 040394 636 YYVLVSNLYASDGRWIRVNQVRELMK 661 (691)
Q Consensus 636 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 661 (691)
++..|+.+|.+.|+|++|++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35678888888888888888888855
No 272
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=93.18 E-value=11 Score=38.34 Aligned_cols=79 Identities=16% Similarity=0.167 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHcCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcC-ChHHHHHHHhccC
Q 040394 129 DIVEFYKCMRKRLKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCR-DIGSSRQVFDETL 207 (691)
Q Consensus 129 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~ 207 (691)
+...+|.....+ +.-|+..|..-+.-+-+.+.+.+...+|.+|....|.++..|-.-..-....+ .++.|..+|.+-.
T Consensus 89 rIv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 89 RIVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 334445544443 44477777777777777777888888888888877776666654443333333 3777777777654
Q ss_pred C
Q 040394 208 D 208 (691)
Q Consensus 208 ~ 208 (691)
+
T Consensus 168 R 168 (568)
T KOG2396|consen 168 R 168 (568)
T ss_pred h
Confidence 4
No 273
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.13 E-value=2.2 Score=43.16 Aligned_cols=54 Identities=11% Similarity=0.217 Sum_probs=28.1
Q ss_pred HHHHHHhcCChHHHHHHHHhC-C-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040394 574 MVDLLARAGRLEEALEFMENM-P-IEP--DVSLFGAFLHGCGLYSRFDLGEVMIKKML 627 (691)
Q Consensus 574 li~~~~~~g~~~~A~~~~~~~-~-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (691)
+...+.+.|+.++|++.++++ . .++ +..+...|+.++...+.+.++..++.+--
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 444444556666666655555 2 111 12345555555666666666666655543
No 274
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.08 E-value=0.24 Score=39.75 Aligned_cols=59 Identities=14% Similarity=0.017 Sum_probs=53.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHh-CCCc
Q 040394 608 HGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQ-RGLS 666 (691)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~g~~ 666 (691)
-++...|+.+.|++.|.+++.+-|..+..|..-+..+.-+|+.++|.+-+++.++ .|.+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~ 110 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ 110 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence 3567899999999999999999999999999999999999999999999999987 4444
No 275
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.38 E-value=7.8 Score=34.64 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHhCCCcHHHHHHHHHHHhC
Q 040394 635 CYYVLVSNLYASDGRWIRVNQVRELMKQR 663 (691)
Q Consensus 635 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 663 (691)
.+|..|+..+...|+.++|..+++.....
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 45566666666777777776666655543
No 276
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.26 E-value=0.78 Score=43.24 Aligned_cols=59 Identities=12% Similarity=0.228 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040394 570 HYVCMVDLLARAGRLEEALEFMENM-PIE-PDVSLFGAFLHGCGLYSRFDLGEVMIKKMLE 628 (691)
Q Consensus 570 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (691)
++..++..+...|+.+.+.+.+++. ... -+...|..++.+|.+.|+...|+..|+++.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3444444455555555555554444 222 2444555555555555555555555554443
No 277
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.14 E-value=9.8 Score=35.23 Aligned_cols=49 Identities=22% Similarity=0.173 Sum_probs=22.2
Q ss_pred hcCCHHHHHHHHHhcCC--C----ChhHHHHHHHHHHhcCCchhHHHHHHHhhHC
Q 040394 293 KCGNIRDARSVFDELCS--I----DLVSWTAMIVGYTQSGYPDKALKLFTDKKWA 341 (691)
Q Consensus 293 ~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 341 (691)
+.|++++|.+.|+.+.. | ...+--.++.++.+.++++.|+..+++....
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 44555555555555521 1 1122333444445555555555555554443
No 278
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.04 E-value=0.28 Score=29.74 Aligned_cols=27 Identities=4% Similarity=-0.039 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040394 602 LFGAFLHGCGLYSRFDLGEVMIKKMLE 628 (691)
Q Consensus 602 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (691)
+|..|...|.+.|++++|+.++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788889999999999999998664
No 279
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.83 E-value=0.34 Score=28.77 Aligned_cols=31 Identities=19% Similarity=0.226 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 040394 602 LFGAFLHGCGLYSRFDLGEVMIKKMLELHPD 632 (691)
Q Consensus 602 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 632 (691)
+|..+...+...|++++|...|++++++.|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4555666666777777777777777776664
No 280
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.79 E-value=0.26 Score=29.41 Aligned_cols=32 Identities=9% Similarity=0.158 Sum_probs=24.8
Q ss_pred HHHHHHhCCCChhHHHHHHHHhHhcCChHHHH
Q 040394 169 HCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSR 200 (691)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 200 (691)
|++.++..|.+..+|+.|...|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45666677778888888888888888888875
No 281
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.61 E-value=13 Score=35.72 Aligned_cols=101 Identities=9% Similarity=-0.010 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhccCcHH---HHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CHhHHHHHH
Q 040394 431 VTLVSVISACASLGAVQ---VGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMREK---NTVTWSAMI 504 (691)
Q Consensus 431 ~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li 504 (691)
.++..++.++...+..+ .|..+++.+.... +..+.++..-+..+.+.++.+++.+.+.+|... ....+...+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~--~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY--GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHH
Confidence 45667777777776654 4555555554443 445666666677777788888888888888742 233444444
Q ss_pred HHHh--cCCChHHHHHHHHHHHHCCCCCCHH
Q 040394 505 GGYG--MQGDGGGSLALFSDMLNEEVQPNEV 533 (691)
Q Consensus 505 ~~~~--~~~~~~~A~~~~~~m~~~g~~p~~~ 533 (691)
..+. .......|...+..+....+.|...
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCChh
Confidence 4441 1233455666666666555555543
No 282
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.59 E-value=6.2 Score=33.86 Aligned_cols=93 Identities=18% Similarity=0.050 Sum_probs=46.5
Q ss_pred HHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHH-HHHHHH--HHHhccCcHHHHHHHHHHHHHcCCCC
Q 040394 387 LVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAV-TLVSVI--SACASLGAVQVGSSLHAYSTKQGLLS 463 (691)
Q Consensus 387 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~-~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~ 463 (691)
........|+...|...|+++-... ..|-.. -...|= -.+...|.++....-.+.+...+. +
T Consensus 100 ~at~~a~kgdta~AV~aFdeia~dt--------------~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n-~ 164 (221)
T COG4649 100 AATLLAQKGDTAAAVAAFDEIAADT--------------SIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGN-P 164 (221)
T ss_pred HHHHHhhcccHHHHHHHHHHHhccC--------------CCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCC-h
Confidence 3444556677777777777765431 122221 111111 123455555555555555544443 3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhccc
Q 040394 464 SNVYVGTALLNFYAKCGDAQSARMVFDAMRE 494 (691)
Q Consensus 464 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 494 (691)
-....-..|.-+-.+.|++..|.++|..+..
T Consensus 165 mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 165 MRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 3344444555555566666666666665543
No 283
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.50 E-value=5.7 Score=36.19 Aligned_cols=162 Identities=15% Similarity=0.131 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHC
Q 040394 447 QVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMREKNTVTWSAMIGGYGMQGDGGGSLALFSDMLNE 526 (691)
Q Consensus 447 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 526 (691)
+.|.-+.+++.+. +.-...|+--..+|..+|..+.|-..+++.-+ .....+++.|+++|++...-
T Consensus 75 EqaamLake~~kl---sEvvdl~eKAs~lY~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralav 139 (308)
T KOG1585|consen 75 EQAAMLAKELSKL---SEVVDLYEKASELYVECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAV 139 (308)
T ss_pred HHHHHHHHHHHHh---HHHHHHHHHHHHHHHHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHH
Confidence 4444444444432 33445566666778888887777766665432 22344566666666665431
Q ss_pred CCCCC------HHHHHHHHHHhcccCCHHHHHHHHHHch---hhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC--
Q 040394 527 EVQPN------EVIFTTILSACSHTGMVGEGWKCFYSMC---RDFKFVPS-MKHYVCMVDLLARAGRLEEALEFMENM-- 594 (691)
Q Consensus 527 g~~p~------~~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-- 594 (691)
+..+ ...+...-..+.+...+++|-..+.+-. ....--|+ -..|-..|-.+.-..++..|...++.-
T Consensus 140 -ve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~q 218 (308)
T KOG1585|consen 140 -VEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQ 218 (308)
T ss_pred -HhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhc
Confidence 1111 1223333445566666666655554220 00011122 233555666777788999999999884
Q ss_pred -C---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040394 595 -P---IEPDVSLFGAFLHGCGLYSRFDLGEVMIKK 625 (691)
Q Consensus 595 -~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 625 (691)
+ ...+..+...|+.+| ..||.+++..++..
T Consensus 219 ip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 219 IPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLSS 252 (308)
T ss_pred CccccChHHHHHHHHHHHHh-ccCCHHHHHHHHcC
Confidence 2 223456778888777 77888888777653
No 284
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.05 E-value=2.2 Score=41.10 Aligned_cols=185 Identities=10% Similarity=-0.029 Sum_probs=120.5
Q ss_pred hcCCHHHHHHHHHhcccC------CHhHHHHHHHHHhcCCChHHHHHHH----HHHHHCC-CCCCHHHHHHHHHHhcccC
Q 040394 478 KCGDAQSARMVFDAMREK------NTVTWSAMIGGYGMQGDGGGSLALF----SDMLNEE-VQPNEVIFTTILSACSHTG 546 (691)
Q Consensus 478 ~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~A~~~~----~~m~~~g-~~p~~~~~~~ll~~~~~~g 546 (691)
...+.++|+..+.....+ ...+|..+..+.++.|.+++++..- +-..+.. -..-...|..+.+++.+..
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777776655532 2346777888888999888876432 2121110 0011134555556666666
Q ss_pred CHHHHHHHHHHchhhcCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhC-C-----CCC--CHHHHHHHHHHHHhcCC
Q 040394 547 MVGEGWKCFYSMCRDFKFVPS---MKHYVCMVDLLARAGRLEEALEFMENM-P-----IEP--DVSLFGAFLHGCGLYSR 615 (691)
Q Consensus 547 ~~~~A~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~-~-----~~p--~~~~~~~l~~~~~~~g~ 615 (691)
++.+++.+-..-....|..|. .....++..++...+.++++++.|+.. . ..| ....+..|...|.+..|
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 666777766654444444552 223445667777788899999999887 1 222 23478888899999999
Q ss_pred HHHHHHHHHHHHhcC----CCC------chhHHHHHHHHHhCCCcHHHHHHHHHHHh
Q 040394 616 FDLGEVMIKKMLELH----PDK------ACYYVLVSNLYASDGRWIRVNQVRELMKQ 662 (691)
Q Consensus 616 ~~~A~~~~~~~~~~~----p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 662 (691)
+++|.-+..++.++. -++ ....+.++..+...|+..+|.+..++..+
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~k 234 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMK 234 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 999999999988732 222 23456788889999999999988877654
No 285
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.80 E-value=35 Score=38.97 Aligned_cols=156 Identities=14% Similarity=0.090 Sum_probs=83.9
Q ss_pred CCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCcHHHHHHHHHH----HhcCCChhhHHHHH
Q 040394 295 GNIRDARSVFDELCSIDLVSWTAMIVGYTQSGYPDKALKLFTDKKWADFFPNHVTIASVLSA----SAQLGNLNMGRMVH 370 (691)
Q Consensus 295 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~----~~~~~~~~~a~~~~ 370 (691)
++++.|+.-+.++. ...|.-.+..--++|.+++|+.++ +|+...+..+..+ +.....+++|.-+|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 45666666666653 223444444445677777777775 4565555444433 33445555554444
Q ss_pred HHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHH--HHHHHHHHhccCcHHH
Q 040394 371 SLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVT--LVSVISACASLGAVQV 448 (691)
Q Consensus 371 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~--~~~ll~~~~~~~~~~~ 448 (691)
+..-+. .-.+.+|..+|++.+|+.+-.++... -|... -..|..-+...++.-+
T Consensus 963 e~~Gkl--------ekAl~a~~~~~dWr~~l~~a~ql~~~-----------------~de~~~~a~~L~s~L~e~~kh~e 1017 (1265)
T KOG1920|consen 963 ERCGKL--------EKALKAYKECGDWREALSLAAQLSEG-----------------KDELVILAEELVSRLVEQRKHYE 1017 (1265)
T ss_pred HHhccH--------HHHHHHHHHhccHHHHHHHHHhhcCC-----------------HHHHHHHHHHHHHHHHHcccchh
Confidence 332211 23445566666666666666665422 12211 1345556666666666
Q ss_pred HHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC
Q 040394 449 GSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMREK 495 (691)
Q Consensus 449 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 495 (691)
|-++..+.... + .-.+..|++...|++|..+-......
T Consensus 1018 Aa~il~e~~sd----~-----~~av~ll~ka~~~~eAlrva~~~~~~ 1055 (1265)
T KOG1920|consen 1018 AAKILLEYLSD----P-----EEAVALLCKAKEWEEALRVASKAKRD 1055 (1265)
T ss_pred HHHHHHHHhcC----H-----HHHHHHHhhHhHHHHHHHHHHhcccc
Confidence 66665544321 1 12344567777788887777665543
No 286
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.56 E-value=8.5 Score=37.28 Aligned_cols=128 Identities=13% Similarity=0.152 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHh--c----CCHHHHHHHHHhcccC-------CHhHHHHHHHHHhcCCC
Q 040394 446 VQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAK--C----GDAQSARMVFDAMREK-------NTVTWSAMIGGYGMQGD 512 (691)
Q Consensus 446 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~~~ 512 (691)
++....+++.+.+.|. ..+..+|-+..-.... . .....|..+|+.|++. +-..+..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gF-k~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGF-KRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHhcc-CccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 4566788899999988 6666655543332222 2 2355688999999862 44455555444 3333
Q ss_pred h----HHHHHHHHHHHHCCCCCCHH--HHHHHHHHhcccCC--HHHHHHHHHHchhhcCCCCChhHHHHHHHH
Q 040394 513 G----GGSLALFSDMLNEEVQPNEV--IFTTILSACSHTGM--VGEGWKCFYSMCRDFKFVPSMKHYVCMVDL 577 (691)
Q Consensus 513 ~----~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~--~~~A~~~~~~m~~~~~~~p~~~~~~~li~~ 577 (691)
+ +.+..+|+.+.+.|+..+.. ....++..+..... ..++.++++.+ ++.|+++....|..+.-.
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l-~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNAL-KKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHH-HHcCCccccccccHHHHH
Confidence 3 45678888898888887654 33333333322222 44778888888 666999887777765443
No 287
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.27 E-value=0.5 Score=27.98 Aligned_cols=29 Identities=10% Similarity=0.036 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHhCCCcHHHHHHHHHHHhC
Q 040394 635 CYYVLVSNLYASDGRWIRVNQVRELMKQR 663 (691)
Q Consensus 635 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 663 (691)
.++..++.++...|++++|++.+++.++.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999998764
No 288
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.07 E-value=7 Score=32.76 Aligned_cols=66 Identities=5% Similarity=-0.100 Sum_probs=41.5
Q ss_pred ccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhccCCCC-hhhHHHHHHHHHh
Q 040394 158 ELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDETLDKN-VVSWTSMIAGYVQ 223 (691)
Q Consensus 158 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~ 223 (691)
..++++++..+++.|.-..|.....-..-...+...|++++|.++|+++.+.. ...|..-+.++|-
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 46677777777777777666655555555556677777777777777776543 2344444444443
No 289
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.90 E-value=0.72 Score=43.75 Aligned_cols=96 Identities=11% Similarity=0.073 Sum_probs=70.0
Q ss_pred HHHhcccCCHHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCC
Q 040394 539 LSACSHTGMVGEGWKCFYSMCRDFKFVP-SMKHYVCMVDLLARAGRLEEALEFMENM-PIE-PDVSLFGAFLHGCGLYSR 615 (691)
Q Consensus 539 l~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~ 615 (691)
-.-|.+.|.+++|+..|..- ..+.| |.+++..-..+|.+..++..|..-.... ... .=...|..-+.+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~---ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTA---IAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhh---hccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 34678899999999999844 36777 7888888888999999888777655554 211 112345555555556788
Q ss_pred HHHHHHHHHHHHhcCCCCchhH
Q 040394 616 FDLGEVMIKKMLELHPDKACYY 637 (691)
Q Consensus 616 ~~~A~~~~~~~~~~~p~~~~~~ 637 (691)
.++|.+-++..+++.|++...-
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ELk 202 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIELK 202 (536)
T ss_pred HHHHHHhHHHHHhhCcccHHHH
Confidence 8999999999999999965443
No 290
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.82 E-value=5.7 Score=38.41 Aligned_cols=51 Identities=14% Similarity=0.252 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHHcCCCCCcchHHHHHHHHcc--cC----ChhHHHHHHHHHHHhCC
Q 040394 127 YKDIVEFYKCMRKRLKEHDNFVFSKVLKACCE--LR----DIDEGMKVHCEIVKVGG 177 (691)
Q Consensus 127 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~ 177 (691)
+++.+.+++.|.+.|+.-+..+|.+..-.... .. ....|.++|+.|++..+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~ 134 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHP 134 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCc
Confidence 45667788999999999888777664443332 22 34568899999988774
No 291
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.75 E-value=32 Score=37.01 Aligned_cols=212 Identities=8% Similarity=0.036 Sum_probs=125.9
Q ss_pred cHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHh-cCCHHHHHHHHHhcccC-CHhHHHHHHHHH----hcCCChHHHHH
Q 040394 445 AVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAK-CGDAQSARMVFDAMREK-NTVTWSAMIGGY----GMQGDGGGSLA 518 (691)
Q Consensus 445 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~-~~~~~~~li~~~----~~~~~~~~A~~ 518 (691)
+.+.|..++....+.| .|+.......+..... ..+...|.++|....+. .+..+-.+...| ....+...|..
T Consensus 308 d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~ 385 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFA 385 (552)
T ss_pred cHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHH
Confidence 6778999999999988 5666655444433333 34678999999887754 333333333222 23567888999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHH---Hh----cCChHHHHHHH
Q 040394 519 LFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLL---AR----AGRLEEALEFM 591 (691)
Q Consensus 519 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~---~~----~g~~~~A~~~~ 591 (691)
++++..+.| .|....-...+..+.. +.++.+.-.+..+ ...+..-....-..++... .. ..+.+.+...+
T Consensus 386 ~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~-a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~ 462 (552)
T KOG1550|consen 386 YYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYL-AELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLY 462 (552)
T ss_pred HHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHH-HHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHH
Confidence 999999988 4443333333444444 6666666665555 4434332211111111111 11 22556666777
Q ss_pred HhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhC-C--CcHHHHHHHHHHHhCC
Q 040394 592 ENMPIEPDVSLFGAFLHGCGL----YSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASD-G--RWIRVNQVRELMKQRG 664 (691)
Q Consensus 592 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~~~~~g 664 (691)
.+...+-+......+...|.. ..+.+.|...+..+.... ......++.++..- | .+..|.++++...+.+
T Consensus 463 ~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 463 SRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred HHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 776545555666666665543 246888888888877766 55666666666533 1 2678888888777644
No 292
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.31 E-value=14 Score=32.07 Aligned_cols=100 Identities=11% Similarity=0.036 Sum_probs=56.3
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcC--CHHHHHHHHHhcC
Q 040394 231 LVLFNRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCG--NIRDARSVFDELC 308 (691)
Q Consensus 231 ~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~ 308 (691)
.+.++.+.+.+++|+...+..++..+.+.|++.. +.+++..++-+|.......+-.+.... -..-|.+.+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 3455666667777777777777777777776543 344445555555544443332222211 1223344444332
Q ss_pred CCChhHHHHHHHHHHhcCCchhHHHHHHHh
Q 040394 309 SIDLVSWTAMIVGYTQSGYPDKALKLFTDK 338 (691)
Q Consensus 309 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 338 (691)
..+..++..+...|++-+|+++.+..
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 23455566677777777777777654
No 293
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.14 E-value=3.8 Score=38.80 Aligned_cols=76 Identities=16% Similarity=0.218 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCchhHHHHHHHhhH-----CCCCCcHHHHHH
Q 040394 281 SHLVTALLDMYVKCGNIRDARSVFDELCS---IDLVSWTAMIVGYTQSGYPDKALKLFTDKKW-----ADFFPNHVTIAS 352 (691)
Q Consensus 281 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~t~~~ 352 (691)
..++..++..+..+|+.+.+.+.++++.. -+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 45678888999999999999999998833 3667899999999999999999999988765 589998888766
Q ss_pred HHHH
Q 040394 353 VLSA 356 (691)
Q Consensus 353 ll~~ 356 (691)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 6655
No 294
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=89.14 E-value=11 Score=30.78 Aligned_cols=140 Identities=14% Similarity=0.113 Sum_probs=77.0
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHH
Q 040394 222 VQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNIRDAR 301 (691)
Q Consensus 222 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 301 (691)
.-.|..++..++..+...+ .+..-||.+|--....-+-+...+.++.+ |---|.. .+|++....
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDis----------~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSI---GKIFDIS----------KCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-GG----------G-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHH---hhhcCch----------hhcchHHHH
Confidence 4467777888887777654 35556666666555554444444444433 2222221 223333333
Q ss_pred HHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCcHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCC
Q 040394 302 SVFDELCSIDLVSWTAMIVGYTQSGYPDKALKLFTDKKWADFFPNHVTIASVLSASAQLGNLNMGRMVHSLGIRLGLE 379 (691)
Q Consensus 302 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 379 (691)
..+-.+. .+......-+..+...|+-|+-.+++.++.. +-.+++.....+..+|.+.|+..++..++.++.+.|..
T Consensus 77 ~C~~~~n-~~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 77 ECYAKRN-KLSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3332221 1233445556777888888888888888765 34677777888888999999988888888888777754
No 295
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.13 E-value=0.77 Score=26.86 Aligned_cols=28 Identities=11% Similarity=0.179 Sum_probs=17.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 040394 605 AFLHGCGLYSRFDLGEVMIKKMLELHPD 632 (691)
Q Consensus 605 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 632 (691)
.+..++.+.|++++|...++++++..|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3445555666667777777666666665
No 296
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=89.10 E-value=26 Score=35.10 Aligned_cols=75 Identities=15% Similarity=0.036 Sum_probs=58.5
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhC
Q 040394 350 IASVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDD 424 (691)
Q Consensus 350 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 424 (691)
...|+.-|...|+..+|.+..+++--.-.....++.+++.+.-+.|+-.....+++..-..+.++.+.|-.++.+
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglIT~nQMtkGf~R 586 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCceeHHHhhhhhhh
Confidence 456788899999999998876554222222677889999999999998888999998888887877777777765
No 297
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=88.90 E-value=27 Score=35.00 Aligned_cols=58 Identities=21% Similarity=0.240 Sum_probs=39.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcccC---CHhHHHHHHHHHhcCCChHHHHHHHHHHHHCC
Q 040394 470 TALLNFYAKCGDAQSARMVFDAMREK---NTVTWSAMIGGYGMQGDGGGSLALFSDMLNEE 527 (691)
Q Consensus 470 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 527 (691)
..|+.-|...|+..+|.+.++++--| ..+.+.+++.+.-+.|+-...+.++++.-..|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 34666677777777777777776654 45567777777777777666666666665554
No 298
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.77 E-value=15 Score=31.72 Aligned_cols=121 Identities=13% Similarity=0.147 Sum_probs=74.7
Q ss_pred HhcCCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHhcccCCHHHHHHHHHHchhhcCCCCChh-HHHHH--HHHHHhcC
Q 040394 507 YGMQGDGGGSLALFSDMLNEEVQPNEVIFT-TILSACSHTGMVGEGWKCFYSMCRDFKFVPSMK-HYVCM--VDLLARAG 582 (691)
Q Consensus 507 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~-~~~~l--i~~~~~~g 582 (691)
+++.+..++|+.-|..+.+.|...-+..-. .+.......|+...|...|+++-.. .-.|-+. -...| .-.+...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhccc
Confidence 345667777777777777766443322111 1122446778888888888877433 2222211 11111 22356788
Q ss_pred ChHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040394 583 RLEEALEFMENMPIEP---DVSLFGAFLHGCGLYSRFDLGEVMIKKMLE 628 (691)
Q Consensus 583 ~~~~A~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (691)
.+++.....+.+..+- ....-..|.-+-.+.|++.+|...|+++..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 8888888888773222 234556777777889999999999998776
No 299
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.75 E-value=16 Score=36.68 Aligned_cols=69 Identities=14% Similarity=0.117 Sum_probs=56.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCCCc
Q 040394 598 PDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHP----DKACYYVLVSNLYASDGRWIRVNQVRELMKQRGLS 666 (691)
Q Consensus 598 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 666 (691)
....+|..+...+.+.|.++.|...+.++....+ ..+.+...-+.++...|+.++|...++...+..+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~ 216 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLS 216 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 3456899999999999999999999999988542 23566666788999999999999999998884443
No 300
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.69 E-value=43 Score=37.02 Aligned_cols=84 Identities=18% Similarity=0.033 Sum_probs=40.5
Q ss_pred hccCcHHHHHHHHHHHHHcCCCCCchh-------HHHHHH-HHHHhcCCHHHHHHHHHhccc--------CCHhHHHHHH
Q 040394 441 ASLGAVQVGSSLHAYSTKQGLLSSNVY-------VGTALL-NFYAKCGDAQSARMVFDAMRE--------KNTVTWSAMI 504 (691)
Q Consensus 441 ~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li 504 (691)
....++++|..+..+....-. .++.. .++.+- ......|+++.|.++.+...+ ..+..+..+.
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~-~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLK-APMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHccChHHHHHHHHHHHHHhC-cCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345566666666666554321 21111 112211 112234556666555554432 2344555555
Q ss_pred HHHhcCCChHHHHHHHHHHHH
Q 040394 505 GGYGMQGDGGGSLALFSDMLN 525 (691)
Q Consensus 505 ~~~~~~~~~~~A~~~~~~m~~ 525 (691)
.+..-.|++++|..+.++..+
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHH
Confidence 555566666666665555444
No 301
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.65 E-value=3.8 Score=38.69 Aligned_cols=98 Identities=10% Similarity=0.192 Sum_probs=73.6
Q ss_pred cCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc-C--------CHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCC
Q 040394 459 QGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE-K--------NTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQ 529 (691)
Q Consensus 459 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 529 (691)
.|. +....+...++..-....+++.+...+-+++. | ..++|-.+ + -.=++++++.++..=++.|+-
T Consensus 58 ~g~-~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl---l-lky~pq~~i~~l~npIqYGiF 132 (418)
T KOG4570|consen 58 RGL-PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL---L-LKYDPQKAIYTLVNPIQYGIF 132 (418)
T ss_pred cCC-CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH---H-HccChHHHHHHHhCcchhccc
Confidence 444 55566666667666677888888888877764 2 22333332 2 233677999999999999999
Q ss_pred CCHHHHHHHHHHhcccCCHHHHHHHHHHchhh
Q 040394 530 PNEVIFTTILSACSHTGMVGEGWKCFYSMCRD 561 (691)
Q Consensus 530 p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 561 (691)
||..+++.+++.+.+.+++.+|.++.-.|+..
T Consensus 133 ~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 133 PDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred cchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999999999999888777554
No 302
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.00 E-value=44 Score=36.29 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=22.6
Q ss_pred hHHHHHHHHhHhcCChHHHHHHHHhCCCC
Q 040394 382 TVINALVDMYAKCHVIADARYIFETTSEK 410 (691)
Q Consensus 382 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 410 (691)
.....|+..|...+++..|..++-...+.
T Consensus 506 ~L~e~La~LYl~d~~Y~~Al~~ylklk~~ 534 (846)
T KOG2066|consen 506 ALLEVLAHLYLYDNKYEKALPIYLKLQDK 534 (846)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHhccCh
Confidence 34455888888899999999888887655
No 303
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.92 E-value=0.94 Score=26.83 Aligned_cols=29 Identities=14% Similarity=0.062 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHhCCCcHHHHHHHHHHHhC
Q 040394 635 CYYVLVSNLYASDGRWIRVNQVRELMKQR 663 (691)
Q Consensus 635 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 663 (691)
..|..++.+|...|++++|++.+++.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46889999999999999999999998874
No 304
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=87.60 E-value=59 Score=37.30 Aligned_cols=115 Identities=14% Similarity=0.068 Sum_probs=63.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcccCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHH
Q 040394 470 TALLNFYAKCGDAQSARMVFDAMREKNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVG 549 (691)
Q Consensus 470 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 549 (691)
.-.++.--+.|-+.+|+.++..-.+.-...|.+...-+...+.+++|.-.|+..-+ ....+.+|...|+|.
T Consensus 912 ~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr 982 (1265)
T KOG1920|consen 912 PECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWR 982 (1265)
T ss_pred HHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHH
Confidence 33444444555555555554433333334555555555566666666666554322 123455666777777
Q ss_pred HHHHHHHHchhhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 040394 550 EGWKCFYSMCRDFKFVPS--MKHYVCMVDLLARAGRLEEALEFMENMPIE 597 (691)
Q Consensus 550 ~A~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 597 (691)
+|..+..++. ..-+ ..+-..|+.-+...+++-+|-++..+....
T Consensus 983 ~~l~~a~ql~----~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd 1028 (1265)
T KOG1920|consen 983 EALSLAAQLS----EGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD 1028 (1265)
T ss_pred HHHHHHHhhc----CCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC
Confidence 7777776551 1222 122245666777777777777777776433
No 305
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.53 E-value=10 Score=33.49 Aligned_cols=59 Identities=8% Similarity=0.003 Sum_probs=26.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHccCChhhHHHHHHHH
Q 040394 214 WTSMIAGYVQNDCAQEGLVLFNRMREGFVEGN--QITLGSLVTACAKLRALHQGKWLHGYI 272 (691)
Q Consensus 214 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~li~~~~~~~~~~~a~~~~~~~ 272 (691)
+..+...|++.|+.+.|++.|.++.+....|. ...+-.+|+.....+++..+.......
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34444444455555555555555444322222 122334444444445555444444443
No 306
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.00 E-value=1.5 Score=27.31 Aligned_cols=27 Identities=11% Similarity=0.246 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040394 602 LFGAFLHGCGLYSRFDLGEVMIKKMLE 628 (691)
Q Consensus 602 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (691)
+++.|...|...|++++|..+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 445555555555666666555555554
No 307
>PRK09687 putative lyase; Provisional
Probab=86.92 E-value=30 Score=33.28 Aligned_cols=58 Identities=16% Similarity=0.169 Sum_probs=24.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHhHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 040394 465 NVYVGTALLNFYAKCGDAQSARMVFDAMREKNTVTWSAMIGGYGMQGDGGGSLALFSDMLN 525 (691)
Q Consensus 465 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 525 (691)
+..+....+.++++.|+.+-...+.+.+..++ .....+.++...|+. +|+..+.++.+
T Consensus 205 ~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 44444445555555555332222222322222 122344455555553 35555555444
No 308
>PRK09687 putative lyase; Provisional
Probab=86.88 E-value=30 Score=33.27 Aligned_cols=121 Identities=7% Similarity=-0.105 Sum_probs=54.2
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcC-CchhHHHHHHHhhHCCCCCcHHHHHHHHHHHh
Q 040394 280 NSHLVTALLDMYVKCGNIRDARSVFDELCSIDLVSWTAMIVGYTQSG-YPDKALKLFTDKKWADFFPNHVTIASVLSASA 358 (691)
Q Consensus 280 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 358 (691)
+..+-...+.++++.++.+....+..-+..++...-...+.++.+.+ ....+...+..+.. .++...-...+.++.
T Consensus 141 ~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg 217 (280)
T PRK09687 141 STNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLA 217 (280)
T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHH
Confidence 44444455555555554332222233334444444444444444432 12344444444442 344555555555555
Q ss_pred cCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCC
Q 040394 359 QLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSE 409 (691)
Q Consensus 359 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 409 (691)
+.++.. +...+-...+.+. +....+.++...|.. +|...+..+..
T Consensus 218 ~~~~~~-av~~Li~~L~~~~----~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 218 LRKDKR-VLSVLIKELKKGT----VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred ccCChh-HHHHHHHHHcCCc----hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 555532 3322222222221 223455666666664 46666666553
No 309
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=86.84 E-value=4.2 Score=37.16 Aligned_cols=68 Identities=13% Similarity=0.040 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH-------hc--CCC----CchhHHHHHHHHHhCCCcHHHHHHHHHHHhCCCcc
Q 040394 601 SLFGAFLHGCGLYSRFDLGEVMIKKML-------EL--HPD----KACYYVLVSNLYASDGRWIRVNQVRELMKQRGLSK 667 (691)
Q Consensus 601 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~--~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 667 (691)
..+..+.+.|...|+.+....+++++. +. .|. .....++++.+..+.|++++|.+.+.++...+-.+
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 356667777887888555555555544 32 222 24667889999999999999999999998865544
Q ss_pred C
Q 040394 668 S 668 (691)
Q Consensus 668 ~ 668 (691)
.
T Consensus 199 ~ 199 (214)
T PF09986_consen 199 K 199 (214)
T ss_pred C
Confidence 3
No 310
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.46 E-value=1 Score=38.28 Aligned_cols=83 Identities=14% Similarity=0.096 Sum_probs=41.0
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCH
Q 040394 218 IAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNI 297 (691)
Q Consensus 218 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 297 (691)
|..+.+.+.+.....+++.+...+...+....+.++..|++.++.+....+++. .+..-...++..|.+.|.+
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGLY 86 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTSH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcchH
Confidence 444445555555666666665544444555556666666666555555555441 1112223344445555555
Q ss_pred HHHHHHHHhc
Q 040394 298 RDARSVFDEL 307 (691)
Q Consensus 298 ~~A~~~~~~~ 307 (691)
++|.-++.++
T Consensus 87 ~~a~~Ly~~~ 96 (143)
T PF00637_consen 87 EEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHc
Confidence 5555555444
No 311
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=86.42 E-value=2.1 Score=28.67 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 040394 605 AFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLV 640 (691)
Q Consensus 605 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 640 (691)
.+.-++.+.|++++|....+.+++.+|+|.......
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 355678899999999999999999999987665543
No 312
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.28 E-value=53 Score=35.50 Aligned_cols=123 Identities=11% Similarity=-0.004 Sum_probs=62.5
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC---hhhHHHHHHHHHHHCCCCchHHHHHHHHHH
Q 040394 215 TSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRA---LHQGKWLHGYILKIGIEINSHLVTALLDMY 291 (691)
Q Consensus 215 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 291 (691)
..+|+-+...+.+..|.++-+.+...-..- ...|.....-+.+..+ -+.+..+-+++... . .+...|..+..-.
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~A 517 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARRA 517 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHHH
Confidence 345666677777777777776664321111 3444444444444322 22222222222221 2 2344566666666
Q ss_pred HhcCCHHHHHHHHHhcCCC--------ChhHHHHHHHHHHhcCCchhHHHHHHHhhH
Q 040394 292 VKCGNIRDARSVFDELCSI--------DLVSWTAMIVGYTQSGYPDKALKLFTDKKW 340 (691)
Q Consensus 292 ~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 340 (691)
..+|+.+-|..+++.=+.. +..-+..-+.-....|+.+-...++-.|..
T Consensus 518 y~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 518 YQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred HhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 6778888887777643211 112233444455556666666665555544
No 313
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.18 E-value=7.2 Score=34.44 Aligned_cols=60 Identities=13% Similarity=0.090 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcccCCHHHHHHHHHHc
Q 040394 499 TWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNE--VIFTTILSACSHTGMVGEGWKCFYSM 558 (691)
Q Consensus 499 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~m 558 (691)
.+..+..-|++.|+.+.|++.|.++.+.-..|.. ..+-.+|+.....+++..+.....+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3444445555555555555555555544333332 23334444444455555554444443
No 314
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.00 E-value=24 Score=31.23 Aligned_cols=89 Identities=8% Similarity=-0.074 Sum_probs=52.8
Q ss_pred HHhcccCCHHHHHHHHHHchhhcCCCCChhHHH-----HHHHHHHhcCChHHHHHHHHhCCCC-CCHHHHHHHHHHHHhc
Q 040394 540 SACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYV-----CMVDLLARAGRLEEALEFMENMPIE-PDVSLFGAFLHGCGLY 613 (691)
Q Consensus 540 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~ 613 (691)
..+...+++++|...++... +. |....+. .|.......|.+++|+..++....+ -.......-...+...
T Consensus 97 k~~ve~~~~d~A~aqL~~~l---~~-t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~k 172 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQAL---AQ-TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAK 172 (207)
T ss_pred HHHHhhccHHHHHHHHHHHH---cc-chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHc
Confidence 35566777777777776542 11 2222222 3445667778888888877766311 1122233344567777
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q 040394 614 SRFDLGEVMIKKMLELHPD 632 (691)
Q Consensus 614 g~~~~A~~~~~~~~~~~p~ 632 (691)
|+-++|+.-|+++++..++
T Consensus 173 g~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 173 GDKQEARAAYEKALESDAS 191 (207)
T ss_pred CchHHHHHHHHHHHHccCC
Confidence 8888888888887776644
No 315
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.97 E-value=1 Score=24.81 Aligned_cols=23 Identities=4% Similarity=-0.000 Sum_probs=16.2
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHH
Q 040394 636 YYVLVSNLYASDGRWIRVNQVRE 658 (691)
Q Consensus 636 ~~~~l~~~~~~~g~~~~A~~~~~ 658 (691)
....++.++...|++++|.++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45567777777777777777664
No 316
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=85.56 E-value=1.7 Score=25.64 Aligned_cols=28 Identities=14% Similarity=0.137 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHhCCCcHHHHHHHHHHHh
Q 040394 635 CYYVLVSNLYASDGRWIRVNQVRELMKQ 662 (691)
Q Consensus 635 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 662 (691)
.+|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4678899999999999999999998876
No 317
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.54 E-value=2.8 Score=39.96 Aligned_cols=86 Identities=19% Similarity=0.094 Sum_probs=59.8
Q ss_pred HHHHhcCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcC
Q 040394 504 IGGYGMQGDGGGSLALFSDMLNEEVQP-NEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAG 582 (691)
Q Consensus 504 i~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 582 (691)
..-|.++|.+++|+.+|.+-+. +.| |.+++..-..+|.+...+..|..-....+ ..| ...+.+|.|.+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai-----aLd----~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAI-----ALD----KLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHH-----Hhh----HHHHHHHHHHH
Confidence 4579999999999999998887 567 88999888889999988887776655432 112 23455666554
Q ss_pred -------ChHHHHHHHHhC-CCCCCH
Q 040394 583 -------RLEEALEFMENM-PIEPDV 600 (691)
Q Consensus 583 -------~~~~A~~~~~~~-~~~p~~ 600 (691)
+..+|.+-++.. ...|+.
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 455555444444 566663
No 318
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=85.30 E-value=30 Score=31.66 Aligned_cols=197 Identities=18% Similarity=0.178 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHc-CCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--CCH-hHHHHHHH
Q 040394 430 AVTLVSVISACASLGAVQVGSSLHAYSTKQ-GLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE--KNT-VTWSAMIG 505 (691)
Q Consensus 430 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~ 505 (691)
...+......+...++...+...+...... .. +.....+......+...+++..+...+..... ++. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELL-PNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhc-cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHH
Confidence 456666667777778888877777776652 22 56666777777788888888888888887775 222 22333333
Q ss_pred -HHhcCCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC--hhHHHHHHHHH
Q 040394 506 -GYGMQGDGGGSLALFSDMLNEEVQP----NEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS--MKHYVCMVDLL 578 (691)
Q Consensus 506 -~~~~~~~~~~A~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~li~~~ 578 (691)
.+...|+++.|...+.+... ..| ....+......+...++.+.+...+..... ..++ ...+..+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~ 212 (291)
T COG0457 138 GALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK---LNPDDDAEALLNLGLLY 212 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh---hCcccchHHHHHhhHHH
Confidence 78889999999999999865 343 233344444456678899999999987743 3333 56777888888
Q ss_pred HhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 040394 579 ARAGRLEEALEFMENM-PIEPD-VSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPD 632 (691)
Q Consensus 579 ~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 632 (691)
...++++.|...+... ...|+ ...+..+...+...++.+.+...+.+.....|.
T Consensus 213 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 213 LKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 8999999999998887 44554 445555555555777899999999999998887
No 319
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=85.29 E-value=24 Score=30.60 Aligned_cols=46 Identities=9% Similarity=0.050 Sum_probs=23.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcccCCHhHHHHHHHHHhcCCChHH
Q 040394 470 TALLNFYAKCGDAQSARMVFDAMREKNTVTWSAMIGGYGMQGDGGG 515 (691)
Q Consensus 470 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 515 (691)
..+++.+...|++-+|.++.+....-+......++.+..+.+|...
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~l 138 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQL 138 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHH
Confidence 3455566666666666666665443333333334444444444433
No 320
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.25 E-value=61 Score=35.26 Aligned_cols=101 Identities=9% Similarity=0.040 Sum_probs=52.4
Q ss_pred HHcccCChhHHHHHHHHHHHhCCC--ChhHHHHHHHHhHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhCCChhHHHH
Q 040394 155 ACCELRDIDEGMKVHCEIVKVGGP--DSFVLTGLVDMYAKCRDIGSSRQVFDETLDKNVVSWTSMIAGYVQNDCAQEGLV 232 (691)
Q Consensus 155 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 232 (691)
.+.+.+.+++|...-+.....-+. -...+..++..+.-.|++++|-...-.|...+...|--.+..+...++......
T Consensus 365 Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~ 444 (846)
T KOG2066|consen 365 WLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAP 444 (846)
T ss_pred HHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhc
Confidence 334444555555444332222111 234556666667777777777777777766666666666666666555443222
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHc
Q 040394 233 LFNRMREGFVEGNQITLGSLVTACAK 258 (691)
Q Consensus 233 ~~~~m~~~~~~p~~~t~~~li~~~~~ 258 (691)
+ +.......+...|..++..+..
T Consensus 445 ~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 445 Y---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred c---CCCCCcccCchHHHHHHHHHHH
Confidence 2 2222222344455555555544
No 321
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=85.11 E-value=15 Score=28.31 Aligned_cols=86 Identities=15% Similarity=0.176 Sum_probs=57.3
Q ss_pred hhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHHHHhhHC
Q 040394 262 LHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNIRDARSVFDELCSIDLVSWTAMIVGYTQSGYPDKALKLFTDKKWA 341 (691)
Q Consensus 262 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 341 (691)
-++|.-|-+.+...+.. ...+--.-+..+...|++++|..+.+.++-||...|-+|-. .+.|..+++..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 45555555555444322 22333333456788999999999999999999999987765 4667777777777777766
Q ss_pred CCCCcHHHHH
Q 040394 342 DFFPNHVTIA 351 (691)
Q Consensus 342 g~~p~~~t~~ 351 (691)
| .|....|.
T Consensus 98 g-~p~lq~Fa 106 (115)
T TIGR02508 98 G-DPRLQTFV 106 (115)
T ss_pred C-CHHHHHHH
Confidence 5 45555553
No 322
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.01 E-value=27 Score=30.93 Aligned_cols=88 Identities=10% Similarity=0.040 Sum_probs=51.5
Q ss_pred HHHcccCChhHHHHHHHHHHHhCCC---ChhHHHHHHHHhHhcCChHHHHHHHhccCCCChhh--HHHHHHHHHhCCChh
Q 040394 154 KACCELRDIDEGMKVHCEIVKVGGP---DSFVLTGLVDMYAKCRDIGSSRQVFDETLDKNVVS--WTSMIAGYVQNDCAQ 228 (691)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~ 228 (691)
+.+...|++++|+..++.......+ ...+--.|.......|.+|+|+++++...+++-.. ...-.+.+...|+-+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~ 176 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQ 176 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchH
Confidence 4455667777777776665543322 22333445566666777777777777665553322 333345666667777
Q ss_pred HHHHHHHHHHhCC
Q 040394 229 EGLVLFNRMREGF 241 (691)
Q Consensus 229 ~A~~~~~~m~~~~ 241 (691)
+|..-|++..+.+
T Consensus 177 ~Ar~ay~kAl~~~ 189 (207)
T COG2976 177 EARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHcc
Confidence 7777777666654
No 323
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=84.61 E-value=1.1 Score=26.12 Aligned_cols=28 Identities=11% Similarity=0.074 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHHhC
Q 040394 636 YYVLVSNLYASDGRWIRVNQVRELMKQR 663 (691)
Q Consensus 636 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 663 (691)
.+..++.++.+.|++++|.+.++++++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4677899999999999999999999875
No 324
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=84.50 E-value=0.84 Score=38.78 Aligned_cols=84 Identities=14% Similarity=0.168 Sum_probs=59.9
Q ss_pred HHHHHHcccCChhHHHHHHHHHHHhCCC-ChhHHHHHHHHhHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhCCChhH
Q 040394 151 KVLKACCELRDIDEGMKVHCEIVKVGGP-DSFVLTGLVDMYAKCRDIGSSRQVFDETLDKNVVSWTSMIAGYVQNDCAQE 229 (691)
Q Consensus 151 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 229 (691)
.++..+.+.+.+......++.+...+.. +....+.++..|++.++.+...++++.... .-...++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 4567777788888888888888877755 788888888888888887888887774322 333455666666677777
Q ss_pred HHHHHHHH
Q 040394 230 GLVLFNRM 237 (691)
Q Consensus 230 A~~~~~~m 237 (691)
|.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 66666665
No 325
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.13 E-value=5.9 Score=30.21 Aligned_cols=59 Identities=12% Similarity=0.121 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHcCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHH
Q 040394 129 DIVEFYKCMRKRLKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLV 187 (691)
Q Consensus 129 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 187 (691)
++.+-++.+....+.|++......+++|.+.+|+..|..+++-++.....+...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 44555666666778899999999999999999999999999887744322333555444
No 326
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.03 E-value=1.9 Score=26.90 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHhCCCcHHHHHHHHHHHh
Q 040394 635 CYYVLVSNLYASDGRWIRVNQVRELMKQ 662 (691)
Q Consensus 635 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 662 (691)
.++..++.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678899999999999999999999876
No 327
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.92 E-value=9.9 Score=36.10 Aligned_cols=104 Identities=17% Similarity=0.117 Sum_probs=74.0
Q ss_pred HCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC-CCh-----hHHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCcHH
Q 040394 275 IGIEINSHLVTALLDMYVKCGNIRDARSVFDELCS-IDL-----VSWTAMIVGYTQSGYPDKALKLFTDKKWADFFPNHV 348 (691)
Q Consensus 275 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 348 (691)
.|......+...++.......+++.+...+-++.. ++. .+-.+.++. +-.-++++++-++..=++-|+-||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl-llky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH-HHccChHHHHHHHhCcchhccccchh
Confidence 45555666667777777777788888888877622 211 111122333 33446778999998888999999999
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHhCCC
Q 040394 349 TIASVLSASAQLGNLNMGRMVHSLGIRLGLE 379 (691)
Q Consensus 349 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 379 (691)
+++.++..+.+.+++.+|..+.-.+.....-
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe~~ 167 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQEAF 167 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 9999999999999999988887666655443
No 328
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.22 E-value=2.9 Score=37.30 Aligned_cols=65 Identities=11% Similarity=0.130 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 040394 570 HYVCMVDLLARAGRLEEALEFMENM-PIEP-DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKA 634 (691)
Q Consensus 570 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 634 (691)
+.+.-+..+.+.+++++|+...+.- +.+| |...-..+++.++-.|++++|..-++-.-++.|+..
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 3445567788888999998877665 5555 444566678888899999999999998888888864
No 329
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.14 E-value=20 Score=32.58 Aligned_cols=16 Identities=6% Similarity=-0.012 Sum_probs=9.2
Q ss_pred cccCCHHHHHHHHHHc
Q 040394 543 SHTGMVGEGWKCFYSM 558 (691)
Q Consensus 543 ~~~g~~~~A~~~~~~m 558 (691)
.-.+.+++|.++|.+.
T Consensus 25 gg~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 25 GGSNKYEEAAELYERA 40 (288)
T ss_pred CCCcchHHHHHHHHHH
Confidence 3444666666666644
No 330
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.03 E-value=36 Score=31.11 Aligned_cols=89 Identities=8% Similarity=0.068 Sum_probs=49.1
Q ss_pred HHHHHHhc-CChHHHHHHHHhC-----CCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh-------H
Q 040394 574 MVDLLARA-GRLEEALEFMENM-----PIEPDVSL---FGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACY-------Y 637 (691)
Q Consensus 574 li~~~~~~-g~~~~A~~~~~~~-----~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-------~ 637 (691)
+...|... .++++|+..++.. +-+.+... +.-....-...+++.+|+.+|++.....-+++.. +
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf 198 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF 198 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence 44444433 5667777777766 21222222 2223333456789999999999988755554332 2
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHh
Q 040394 638 VLVSNLYASDGRWIRVNQVRELMKQ 662 (691)
Q Consensus 638 ~~l~~~~~~~g~~~~A~~~~~~~~~ 662 (691)
..-+.++...++.-.+.+.+++-.+
T Consensus 199 lkAgLChl~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 199 LKAGLCHLCKADEVNAQRALEKYQE 223 (288)
T ss_pred HHHHHHhHhcccHHHHHHHHHHHHh
Confidence 3333344444666566666655444
No 331
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=83.01 E-value=13 Score=32.40 Aligned_cols=44 Identities=14% Similarity=0.308 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCCCc
Q 040394 616 FDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRGLS 666 (691)
Q Consensus 616 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 666 (691)
+++|...|+++.+.+|++..+...|-.. .+|=++..++.+.+..
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksLe~~-------~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSLEMA-------AKAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHH-------HTHHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHH-------HhhHHHHHHHHHHHhh
Confidence 6777888888888999987777766332 3477777777666543
No 332
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=82.78 E-value=2.4 Score=27.02 Aligned_cols=28 Identities=14% Similarity=0.152 Sum_probs=22.6
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHhCCC
Q 040394 638 VLVSNLYASDGRWIRVNQVRELMKQRGL 665 (691)
Q Consensus 638 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 665 (691)
..|+.+|...|+.+.|+++++++.+.|-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 4578888999999999999988886553
No 333
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=82.75 E-value=5.2 Score=36.30 Aligned_cols=50 Identities=10% Similarity=0.055 Sum_probs=25.2
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHH
Q 040394 611 GLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELM 660 (691)
Q Consensus 611 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 660 (691)
.+..+++.+..--.+++++.|+.....+.++..+.....+++|+..+.+.
T Consensus 55 lk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 55 LKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 34444555555555555555554445555555555555555555555444
No 334
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.64 E-value=6.5 Score=29.97 Aligned_cols=62 Identities=10% Similarity=0.166 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHH
Q 040394 513 GGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVD 576 (691)
Q Consensus 513 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 576 (691)
.=++.+-+..+....+.|++....+.+++|-+..++..|.++++.+..+ +..+...|..++.
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHHH
Confidence 3345666677777778899999999999999999999999999877434 2224445665543
No 335
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.55 E-value=21 Score=31.64 Aligned_cols=93 Identities=13% Similarity=0.134 Sum_probs=57.4
Q ss_pred HHHHhcCCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHH
Q 040394 504 IGGYGMQGDGGGSLALFSDMLNEEVQPNE-----VIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDL 577 (691)
Q Consensus 504 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~ 577 (691)
..-+...|++++|..-|.+.+.. ++|.. ..|..-..++.+.+.++.|+.-..+. ..+.|+ ......-..+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKa---iel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKA---IELNPTYEKALERRAEA 177 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhh---HhcCchhHHHHHHHHHH
Confidence 34567788888888888888874 23322 22333334667777887777766643 245554 2233333456
Q ss_pred HHhcCChHHHHHHHHhC-CCCCCH
Q 040394 578 LARAGRLEEALEFMENM-PIEPDV 600 (691)
Q Consensus 578 ~~~~g~~~~A~~~~~~~-~~~p~~ 600 (691)
|.+...+++|++-|+++ ...|..
T Consensus 178 yek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcch
Confidence 77777888888877777 445544
No 336
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.44 E-value=8.6 Score=34.19 Aligned_cols=74 Identities=15% Similarity=0.115 Sum_probs=48.9
Q ss_pred hcCChHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CchhHHHHHHHHHhCCCcHHH
Q 040394 580 RAGRLEEALEFMENMPIEP--DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPD----KACYYVLVSNLYASDGRWIRV 653 (691)
Q Consensus 580 ~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A 653 (691)
+.|+ ++|.+.|-.+...| +....-..+..|....|.+++++++.+++++.+. |+..+..|+.++.+.|+++.|
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3344 56666666663222 2233333444555677889999999998884322 378888899999999998887
Q ss_pred H
Q 040394 654 N 654 (691)
Q Consensus 654 ~ 654 (691)
-
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 4
No 337
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.27 E-value=4.6 Score=36.06 Aligned_cols=72 Identities=8% Similarity=0.056 Sum_probs=47.7
Q ss_pred HHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhcc---CC---CChhhHHHHHHH
Q 040394 149 FSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDET---LD---KNVVSWTSMIAG 220 (691)
Q Consensus 149 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~---~~~~~~~~li~~ 220 (691)
.+..++.+.+.+.+.+++...++-++..|.|......++..||-.|+|++|..-++-. .. +....|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3444556667777777777777777776667777777888888888888876655543 22 233456666654
No 338
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=82.10 E-value=2.8 Score=23.66 Aligned_cols=28 Identities=21% Similarity=0.160 Sum_probs=13.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 040394 604 GAFLHGCGLYSRFDLGEVMIKKMLELHP 631 (691)
Q Consensus 604 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p 631 (691)
..+...+...|+++.|...+++.++..|
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3344444455555555555555554444
No 339
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.95 E-value=5.7 Score=37.20 Aligned_cols=61 Identities=15% Similarity=0.013 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHh
Q 040394 602 LFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQ 662 (691)
Q Consensus 602 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 662 (691)
+++.....|..+|.+.+|.++.++++.++|-+...+..|...+...|+--.|...++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3445556788999999999999999999999999999999999999998888888877753
No 340
>PRK11619 lytic murein transglycosylase; Provisional
Probab=81.60 E-value=89 Score=34.36 Aligned_cols=243 Identities=5% Similarity=-0.113 Sum_probs=120.1
Q ss_pred cCChhhHHHHHHHHHHHC-CCCch--HHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCCchhHHH
Q 040394 259 LRALHQGKWLHGYILKIG-IEINS--HLVTALLDMYVKCGNIRDARSVFDELCS--IDLVSWTAMIVGYTQSGYPDKALK 333 (691)
Q Consensus 259 ~~~~~~a~~~~~~~~~~g-~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~ 333 (691)
..+.+.|..++....... +.+.. .+...+.......+..++|...++.... .+.....--+..-.+.++++.+..
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~ 333 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNT 333 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHH
Confidence 345577777777764433 22221 2344444444444335667777776532 244444444555557888888888
Q ss_pred HHHHhhHCCCCCcHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCch
Q 040394 334 LFTDKKWADFFPNHVTIASVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVI 413 (691)
Q Consensus 334 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 413 (691)
.+..|.... .-...-.--+..++...|+.++|...++.+... ...|..+... +.|..-. +...
T Consensus 334 ~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~----~~fYG~LAa~--~Lg~~~~-------~~~~--- 396 (644)
T PRK11619 334 WLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ----RGFYPMVAAQ--RLGEEYP-------LKID--- 396 (644)
T ss_pred HHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC----CCcHHHHHHH--HcCCCCC-------CCCC---
Confidence 888875432 223333444555655667777777777665331 1122222111 1111000 0000
Q ss_pred hHHHHHHhhhCCCCCCH-----HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 040394 414 AWNSIISGLDDNVSPDA-----VTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMV 488 (691)
Q Consensus 414 ~~~~li~~~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 488 (691)
..++.. ..-..-+..+...|....|...+..+.... +......+.....+.|..+.+...
T Consensus 397 -----------~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~~----~~~~~~~la~~A~~~g~~~~ai~~ 461 (644)
T PRK11619 397 -----------KAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVASR----SKTEQAQLARYAFNQQWWDLSVQA 461 (644)
T ss_pred -----------CCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 000000 011223344556788888888887777642 233445555556667777777665
Q ss_pred HHhcccC------CHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHH
Q 040394 489 FDAMREK------NTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEV 533 (691)
Q Consensus 489 ~~~~~~~------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 533 (691)
......- -+..|...+..+.+.-.++.++-.---.++.++.|+..
T Consensus 462 ~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a~ 512 (644)
T PRK11619 462 TIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPKAR 512 (644)
T ss_pred HhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCc
Confidence 5433221 11234455555555555555443333334555666543
No 341
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.15 E-value=17 Score=33.68 Aligned_cols=120 Identities=13% Similarity=0.137 Sum_probs=78.8
Q ss_pred cCCHHHHHHHHHHchhhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcC
Q 040394 545 TGMVGEGWKCFYSMCRDFKFVPS--MKHYVCMVDLLARAGRLEEALEFMENM--------PIEPDVSLFGAFLHGCGLYS 614 (691)
Q Consensus 545 ~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~~~~~~~l~~~~~~~g 614 (691)
...+++|+.-|++.++--|-+-+ ......+|....+.|++++..+.+.++ .-.-+..+.++++.....+.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 34667777777655422221111 234445677778888888887777776 12234567788888777777
Q ss_pred CHHHHHHHHHHHHh--cCCCCc----hhHHHHHHHHHhCCCcHHHHHHHHHHHhCC
Q 040394 615 RFDLGEVMIKKMLE--LHPDKA----CYYVLVSNLYASDGRWIRVNQVRELMKQRG 664 (691)
Q Consensus 615 ~~~~A~~~~~~~~~--~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 664 (691)
+.+.-.++++.-++ .+..+. .+...|+.+|...|.+.+-.++++++.+..
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SC 175 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSC 175 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHh
Confidence 77777777776554 122222 334578999999999999999999987643
No 342
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=81.10 E-value=11 Score=29.07 Aligned_cols=60 Identities=10% Similarity=0.166 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHH
Q 040394 515 GSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVD 576 (691)
Q Consensus 515 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 576 (691)
+..+-+..+....+.|++....+.+.+|-+..++..|.++++.+..+.+ +....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4555566666777889999999999999999999999999998855533 33436766654
No 343
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=80.41 E-value=6.2 Score=30.11 Aligned_cols=49 Identities=6% Similarity=-0.036 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHhCCC
Q 040394 601 SLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDK--ACYYVLVSNLYASDGR 649 (691)
Q Consensus 601 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~ 649 (691)
..-..+...+...|++++|.+.+-++++.+|+. ...-..+..++...|.
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 444445555555555555555555555544332 3444444455554444
No 344
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=80.14 E-value=20 Score=27.67 Aligned_cols=79 Identities=11% Similarity=-0.001 Sum_probs=51.5
Q ss_pred ChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 040394 161 DIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDETLDKNVVSWTSMIAGYVQNDCAQEGLVLFNRMREG 240 (691)
Q Consensus 161 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 240 (691)
..++|..+-+.+...+-....+--.-++.+...|++++|..+.+.+..||...|-+|-. .+.|..+++..-+.+|..+
T Consensus 20 cHqEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 20 CHQEANTIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 34455555554444332233333344556778899999999999998899988887765 3566667666667677655
Q ss_pred C
Q 040394 241 F 241 (691)
Q Consensus 241 ~ 241 (691)
|
T Consensus 98 g 98 (115)
T TIGR02508 98 G 98 (115)
T ss_pred C
Confidence 4
No 345
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=79.74 E-value=79 Score=32.64 Aligned_cols=160 Identities=11% Similarity=0.079 Sum_probs=95.1
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHhHHHHH
Q 040394 427 SPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE---KNTVTWSAM 503 (691)
Q Consensus 427 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 503 (691)
..|.....+++..+....+....+.+..+|...| .+...+..+++.|... ..+.-..+++++.+ .|++.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~---e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG---ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHH
Confidence 3455556666777777777777777777777665 3455566677777666 45566666665554 344444444
Q ss_pred HHHHhcCCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHH
Q 040394 504 IGGYGMQGDGGGSLALFSDMLNEEVQPNE------VIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDL 577 (691)
Q Consensus 504 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~------~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~ 577 (691)
+.-|-+ ++.+.+...|.+.... +.|.. ..|..+...- ..+.|.-..+...+.++.|...-...+.-+-.-
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 444444 6666666666666554 22211 1233333211 245566666666665665655556666666667
Q ss_pred HHhcCChHHHHHHHHhC
Q 040394 578 LARAGRLEEALEFMENM 594 (691)
Q Consensus 578 ~~~~g~~~~A~~~~~~~ 594 (691)
|....++++|++++...
T Consensus 215 Ys~~eN~~eai~Ilk~i 231 (711)
T COG1747 215 YSENENWTEAIRILKHI 231 (711)
T ss_pred hccccCHHHHHHHHHHH
Confidence 77777888888777755
No 346
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=79.59 E-value=76 Score=32.34 Aligned_cols=89 Identities=20% Similarity=0.193 Sum_probs=48.6
Q ss_pred cCChHHHHHHHHhC-CCCCCHH----HHHHHHHHHHhc----CCHHHH---HHHHHHHHhcCCCCchhHHHHHHHHHhCC
Q 040394 581 AGRLEEALEFMENM-PIEPDVS----LFGAFLHGCGLY----SRFDLG---EVMIKKMLELHPDKACYYVLVSNLYASDG 648 (691)
Q Consensus 581 ~g~~~~A~~~~~~~-~~~p~~~----~~~~l~~~~~~~----g~~~~A---~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 648 (691)
.|+.++|+.++-.+ .++||.. -|..+++.+-.. |..-.. ..+.++++-.+..+.......+.--....
T Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (831)
T PRK15180 711 EGRLDEALSVLISLKRIEPDVSRLMREYKQIIRLFNESRKDGGSTITSYEHLDYAKKLLVFDSENAYALKYAALNAMHLR 790 (831)
T ss_pred cccHHHHHHHHHhhhccCccHHHHHHHHHHHHHHhhhhcccCCcccchhhhHhhhhhheeeccchHHHHHHHHhhHhHHH
Confidence 46778888777666 5777764 345555555322 111111 22223333344554443333333334567
Q ss_pred CcHHHHHHHHHHHhCCCccCC
Q 040394 649 RWIRVNQVRELMKQRGLSKSP 669 (691)
Q Consensus 649 ~~~~A~~~~~~~~~~g~~~~~ 669 (691)
++.+|..+++++.+.+-+..|
T Consensus 791 ~~~~~~~~~~~~~~~~~~~~~ 811 (831)
T PRK15180 791 DYTQALQYWQRLEKVNGPTEP 811 (831)
T ss_pred HHHHHHHHHHHHHhccCCCcc
Confidence 888899999888875544444
No 347
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=79.46 E-value=7.6 Score=29.98 Aligned_cols=60 Identities=10% Similarity=0.112 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHcCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHH
Q 040394 129 DIVEFYKCMRKRLKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVD 188 (691)
Q Consensus 129 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 188 (691)
+..+-++.+....+.|++......+++|.+.+++..|..+++-++..-.+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 344445555566778888888888888888888888888888877654333225555543
No 348
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.04 E-value=40 Score=35.41 Aligned_cols=98 Identities=13% Similarity=0.090 Sum_probs=42.6
Q ss_pred cCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHH
Q 040394 509 MQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEAL 588 (691)
Q Consensus 509 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 588 (691)
+.|+.+.|.++..+. -+..-|..|-.+....+++..|.+.|... + -|..|+-.+...|+-+.-.
T Consensus 649 ~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a-~---------d~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRA-R---------DLGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhh-c---------chhhhhhhhhhcCChhHHH
Confidence 344555555444332 13334555555555555555555555533 1 1334444444444443222
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040394 589 EFMENMPIEPDVSLFGAFLHGCGLYSRFDLGEVMIKK 625 (691)
Q Consensus 589 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 625 (691)
.+-.... .....|....++...|++++..+++.+
T Consensus 713 ~la~~~~---~~g~~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 713 VLASLAK---KQGKNNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHH---hhcccchHHHHHHHcCCHHHHHHHHHh
Confidence 2221110 000112222345566666666666554
No 349
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.64 E-value=83 Score=32.26 Aligned_cols=118 Identities=8% Similarity=-0.099 Sum_probs=68.7
Q ss_pred cccCCHHHHHHHHHHchhhcCCCCChh-------HHHHHHHHH-HhcCChHHHHHHHHhC-CCC--CCHH--HHHHHHHH
Q 040394 543 SHTGMVGEGWKCFYSMCRDFKFVPSMK-------HYVCMVDLL-ARAGRLEEALEFMENM-PIE--PDVS--LFGAFLHG 609 (691)
Q Consensus 543 ~~~g~~~~A~~~~~~m~~~~~~~p~~~-------~~~~li~~~-~~~g~~~~A~~~~~~~-~~~--p~~~--~~~~l~~~ 609 (691)
.-.|++.+|++-...|..-..-.|.+. ....++..| +..|.++.|..-|... ... .|.. .-..+...
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~ 413 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS 413 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Confidence 347899999888887754444455521 122333333 3567888887766665 222 2222 22334445
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCch----------hHHHHHHHHHhCCCcHHHHHHHHHHHhC
Q 040394 610 CGLYSRFDLGEVMIKKMLELHPDKAC----------YYVLVSNLYASDGRWIRVNQVRELMKQR 663 (691)
Q Consensus 610 ~~~~g~~~~A~~~~~~~~~~~p~~~~----------~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 663 (691)
|.+.|+.+.-.++++ .+.|.|.. +++.-+-....++++.||++.+.+-++.
T Consensus 414 YL~~~~~ed~y~~ld---~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkm 474 (629)
T KOG2300|consen 414 YLRIGDAEDLYKALD---LIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKM 474 (629)
T ss_pred HHHhccHHHHHHHHH---hcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 677776555444443 36666432 2344455566889999999988877663
No 350
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=77.97 E-value=65 Score=30.64 Aligned_cols=158 Identities=11% Similarity=0.039 Sum_probs=80.6
Q ss_pred cCCChHHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHH----HHHcCCCCCcchHHHHHHHHcccCChh-HHH
Q 040394 92 SFGHVKYARSVFDSMPNPDFYSFQVMIRWYFLNDLYKDIVEFYKC----MRKRLKEHDNFVFSKVLKACCELRDID-EGM 166 (691)
Q Consensus 92 ~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~----m~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~ 166 (691)
+++++++|.+++. .=...+.+.|+...|.++-.- ..+.+.+++......++..+...+.-+ +-.
T Consensus 2 ~~kky~eAidLL~-----------~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLY-----------SGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHH-----------HHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHH-----------HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 4566777776652 222344566666555544333 334466666665556655554333211 122
Q ss_pred HHHHHHH---HhC-CC--ChhHHHHHHHHhHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 040394 167 KVHCEIV---KVG-GP--DSFVLTGLVDMYAKCRDIGSSRQVFDETLDKNVVSWTSMIAGYVQNDCAQEGLVLFNRMREG 240 (691)
Q Consensus 167 ~~~~~~~---~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 240 (691)
.+.+.++ +.+ .+ |+..+..+...|.+.|++.+|+..|-.-.+++...+..++......|...++--.+
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi------ 144 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFI------ 144 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHH------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHH------
Confidence 2222222 333 33 89999999999999999999998886655555544433444333444443331111
Q ss_pred CCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHH
Q 040394 241 FVEGNQITLGSLVTACAKLRALHQGKWLHGYILKI 275 (691)
Q Consensus 241 ~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~ 275 (691)
.-.+-.|.-.+++..|...++...+.
T Consensus 145 ---------~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 145 ---------ARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp ---------HHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 12223345567777787777766654
No 351
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.94 E-value=29 Score=36.32 Aligned_cols=165 Identities=13% Similarity=0.104 Sum_probs=104.9
Q ss_pred CCCcchHHHHHHH-----HHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhH
Q 040394 108 NPDFYSFQVMIRW-----YFLNDLYKDIVEFYKCMRKRLKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFV 182 (691)
Q Consensus 108 ~~~~~~~~~ll~~-----~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 182 (691)
+-++..|..++.. ..-.|+++.|..++..+. ...-+.+...+.+.|..++|.++-- |+.
T Consensus 578 e~nVi~y~l~l~vleyqt~vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s~--------D~d- 641 (794)
T KOG0276|consen 578 ELNVISYKILLEVLEYQTLVLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELST--------DPD- 641 (794)
T ss_pred ccceEeEeeehHHHHHHHHhhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcCC--------Chh-
Confidence 3455555544433 234677777766554333 2234555666667777777765421 111
Q ss_pred HHHHHHHhHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCh
Q 040394 183 LTGLVDMYAKCRDIGSSRQVFDETLDKNVVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRAL 262 (691)
Q Consensus 183 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~ 262 (691)
.-.....+.|+++.|.++..+. .+..-|..|.++..+.|++..|.+.|.+... |..|+-.+...|+-
T Consensus 642 --~rFelal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~ 708 (794)
T KOG0276|consen 642 --QRFELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNA 708 (794)
T ss_pred --hhhhhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCCh
Confidence 1123345678888888776654 3567799999999999999999999988754 56677777778887
Q ss_pred hhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 040394 263 HQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNIRDARSVFDEL 307 (691)
Q Consensus 263 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 307 (691)
+....+-....+.|.. |.---+|...|+++++.+++.+-
T Consensus 709 ~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 709 EGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHhc
Confidence 7666666666666532 22233455677777777777554
No 352
>PRK10941 hypothetical protein; Provisional
Probab=77.27 E-value=14 Score=35.07 Aligned_cols=60 Identities=8% Similarity=-0.023 Sum_probs=41.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhC
Q 040394 604 GAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQR 663 (691)
Q Consensus 604 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 663 (691)
+.+-.+|.+.++++.|....+.++.+.|+++.-+.--+.+|.+.|.+..|..-++.-++.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 445556667777777777777777777777766666677777777777777766666654
No 353
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=77.09 E-value=1.2e+02 Score=33.27 Aligned_cols=143 Identities=9% Similarity=0.106 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHhC-C-C--ChhHHHHHHHHhH-hcCChHHHHHHHhccC---C-CChh-----hHHHHHHHHHhCCChhH
Q 040394 164 EGMKVHCEIVKVG-G-P--DSFVLTGLVDMYA-KCRDIGSSRQVFDETL---D-KNVV-----SWTSMIAGYVQNDCAQE 229 (691)
Q Consensus 164 ~a~~~~~~~~~~~-~-~--~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~---~-~~~~-----~~~~li~~~~~~g~~~~ 229 (691)
.|.+.++.+.+.. + | ...++-.+...|. ...+++.|+..+++.. + ++.. ....++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 4566677776433 2 2 6667777888777 5678888888887641 1 2211 2334556666665555
Q ss_pred HHHHHHHHHhCC----CCCChhhHHHH-HHHHHccCChhhHHHHHHHHHHHC---CCCchHHHHHHHHHHH--hcCCHHH
Q 040394 230 GLVLFNRMREGF----VEGNQITLGSL-VTACAKLRALHQGKWLHGYILKIG---IEINSHLVTALLDMYV--KCGNIRD 299 (691)
Q Consensus 230 A~~~~~~m~~~~----~~p~~~t~~~l-i~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~~--~~g~~~~ 299 (691)
|...+++..+.- ..+-...|..+ +..+...++...|.+.++.+...- ..|...++-.++.+.. +.+..++
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 777777765421 11222223333 222223367777777777665532 2333444444444432 3333444
Q ss_pred HHHHHHhc
Q 040394 300 ARSVFDEL 307 (691)
Q Consensus 300 A~~~~~~~ 307 (691)
+.+.++++
T Consensus 198 ~~~~l~~~ 205 (608)
T PF10345_consen 198 VLELLQRA 205 (608)
T ss_pred HHHHHHHH
Confidence 44444433
No 354
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.04 E-value=0.79 Score=43.72 Aligned_cols=59 Identities=14% Similarity=0.041 Sum_probs=27.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCCCcc
Q 040394 609 GCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRGLSK 667 (691)
Q Consensus 609 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 667 (691)
.+.+.+....|+.=+..+++++|+...-|-.-+.+....|+|++|.+.+....+.++.+
T Consensus 157 v~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~dE 215 (377)
T KOG1308|consen 157 VFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYDE 215 (377)
T ss_pred eeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccccH
Confidence 33444444444444444444444444444444444444444444444444444444433
No 355
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=76.95 E-value=1.2e+02 Score=33.22 Aligned_cols=84 Identities=13% Similarity=0.235 Sum_probs=39.1
Q ss_pred HHHHHHhcCCHHHHHHHHHh--cccCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhc---cc
Q 040394 472 LLNFYAKCGDAQSARMVFDA--MREKNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEE-VQPNEVIFTTILSACS---HT 545 (691)
Q Consensus 472 l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~---~~ 545 (691)
....+.-+|+++.|.+.+-+ ....+.+.+.+.+.-|.-.+-.+... ..+.... -.|....+..+|..|. ..
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYRNEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT--T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhhccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 44566778999999999988 22234444444443332211111111 2222211 0111255667777665 46
Q ss_pred CCHHHHHHHHHHc
Q 040394 546 GMVGEGWKCFYSM 558 (691)
Q Consensus 546 g~~~~A~~~~~~m 558 (691)
.+..+|.+++--+
T Consensus 341 td~~~Al~Y~~li 353 (613)
T PF04097_consen 341 TDPREALQYLYLI 353 (613)
T ss_dssp T-HHHHHHHHHGG
T ss_pred cCHHHHHHHHHHH
Confidence 6888999998877
No 356
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=76.62 E-value=32 Score=34.80 Aligned_cols=127 Identities=20% Similarity=0.240 Sum_probs=71.5
Q ss_pred HHHHhcCCChHHHHH-HHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcC
Q 040394 504 IGGYGMQGDGGGSLA-LFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAG 582 (691)
Q Consensus 504 i~~~~~~~~~~~A~~-~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 582 (691)
|.--...||.-.|-+ ++..+....-.|+..-..+.| +...|+++.+.+.+...... +.....+..+++...-+.|
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~ 371 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLA 371 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchh
Confidence 334445666666543 344444433345554444333 45567777777777655222 3344556667777777777
Q ss_pred ChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 040394 583 RLEEALEFMENM-PIE-PDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKA 634 (691)
Q Consensus 583 ~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 634 (691)
++++|...-+-| +.+ .++.............|-++++...|++.+.++|...
T Consensus 372 r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 372 RWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred hHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 777777776666 211 2233332233334455667777777777777766543
No 357
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=76.32 E-value=27 Score=32.09 Aligned_cols=90 Identities=12% Similarity=0.009 Sum_probs=62.8
Q ss_pred HHHHhcCChHHHHHHHHhC---------CCCCCHHHH-----------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 040394 576 DLLARAGRLEEALEFMENM---------PIEPDVSLF-----------GAFLHGCGLYSRFDLGEVMIKKMLELHPDKAC 635 (691)
Q Consensus 576 ~~~~~~g~~~~A~~~~~~~---------~~~p~~~~~-----------~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 635 (691)
+-+.+.|++.+|..-++.+ .-+|...-| ...-+++...|++-++++...+.+..+|.|..
T Consensus 186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvK 265 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVK 265 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHH
Confidence 3455666666665555444 233433322 23334556778898999999999999999998
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHHhCCC
Q 040394 636 YYVLVSNLYASDGRWIRVNQVRELMKQRGL 665 (691)
Q Consensus 636 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 665 (691)
.|..-+.+.+..=+..+|.+-+...++...
T Consensus 266 A~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 266 AYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 888888888888888888888888877543
No 358
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=75.55 E-value=63 Score=29.24 Aligned_cols=87 Identities=15% Similarity=0.000 Sum_probs=60.1
Q ss_pred cCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHH
Q 040394 359 QLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVIS 438 (691)
Q Consensus 359 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~ 438 (691)
+.|-...|+--|.......|.-+.+||.+.--+...|+++.|.+.|+...+-|+ ....+...-.-
T Consensus 77 SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp---------------~y~Ya~lNRgi 141 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP---------------TYNYAHLNRGI 141 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCC---------------cchHHHhccce
Confidence 345555666667777777888888999999999999999999999999876542 11222222222
Q ss_pred HHhccCcHHHHHHHHHHHHHcC
Q 040394 439 ACASLGAVQVGSSLHAYSTKQG 460 (691)
Q Consensus 439 ~~~~~~~~~~a~~~~~~~~~~~ 460 (691)
++--.|++..|.+=+...-..+
T Consensus 142 ~~YY~gR~~LAq~d~~~fYQ~D 163 (297)
T COG4785 142 ALYYGGRYKLAQDDLLAFYQDD 163 (297)
T ss_pred eeeecCchHhhHHHHHHHHhcC
Confidence 3345677888877776666665
No 359
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=73.99 E-value=1.1e+02 Score=31.56 Aligned_cols=174 Identities=10% Similarity=0.093 Sum_probs=118.6
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040394 463 SSNVYVGTALLNFYAKCGDAQSARMVFDAMRE--KNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILS 540 (691)
Q Consensus 463 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 540 (691)
+.+.....+++..+....++.-.+.+..+|.. .+-..|-.++..|... ..+.-..+|+++.+. .-|......-+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHH
Confidence 56666777888999999899999999998875 5677889999999988 668889999999885 344444444444
Q ss_pred HhcccCCHHHHHHHHHHchhhcCCCCC------hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHH
Q 040394 541 ACSHTGMVGEGWKCFYSMCRDFKFVPS------MKHYVCMVDLLARAGRLEEALEFMENM----PIEPDVSLFGAFLHGC 610 (691)
Q Consensus 541 ~~~~~g~~~~A~~~~~~m~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~ 610 (691)
.+...++.+.+..+|.+.... +-|. ...|.-|+..- ..+.+..+.+..+. +...-...+.-+-.-|
T Consensus 140 ~~yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 444457888888888876443 3331 22344443321 34566666666655 3333445556666677
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 040394 611 GLYSRFDLGEVMIKKMLELHPDKACYYVLVSNL 643 (691)
Q Consensus 611 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 643 (691)
....++++|++++..+++.+..+......++..
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~ 248 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIEN 248 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHH
Confidence 888999999999998888766655554444443
No 360
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=73.61 E-value=8 Score=22.14 Aligned_cols=30 Identities=10% Similarity=0.259 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 040394 614 SRFDLGEVMIKKMLELHPDKACYYVLVSNL 643 (691)
Q Consensus 614 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 643 (691)
|+.+.+..++++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567889999999999889888888766543
No 361
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=73.07 E-value=24 Score=31.54 Aligned_cols=70 Identities=4% Similarity=0.058 Sum_probs=42.1
Q ss_pred HHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC------CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 040394 549 GEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENM------PIEPDVSLFGAFLHGCGLYSRFDLGE 620 (691)
Q Consensus 549 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~------~~~p~~~~~~~l~~~~~~~g~~~~A~ 620 (691)
+.|.+.|-.+ +..+.--++.....|...|. ..+.++++.++.+. +..+|+..+.+|+..+.+.|+++.|-
T Consensus 123 ~~A~~~fL~~-E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQL-EGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHH-cCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4555555555 33333344555555555444 45667777666655 23567777777777777777777664
No 362
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=72.83 E-value=31 Score=28.35 Aligned_cols=42 Identities=12% Similarity=0.252 Sum_probs=35.1
Q ss_pred HHHHHHHHHHh--cCCCCchhHHHHHHHHHhCCCcHHHHHHHHH
Q 040394 618 LGEVMIKKMLE--LHPDKACYYVLVSNLYASDGRWIRVNQVREL 659 (691)
Q Consensus 618 ~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 659 (691)
.+.++|+.|.. +.-..+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 78888888887 5667778899999999999999999999865
No 363
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=72.81 E-value=9.1 Score=27.99 Aligned_cols=46 Identities=9% Similarity=0.109 Sum_probs=21.1
Q ss_pred cCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHH
Q 040394 545 TGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEF 590 (691)
Q Consensus 545 ~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 590 (691)
....++|+..|...+++..-.|+ -.++..++.+|+..|++++++++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555544443322222 23444455555555555554443
No 364
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=70.31 E-value=1.9e+02 Score=32.43 Aligned_cols=96 Identities=14% Similarity=0.034 Sum_probs=59.1
Q ss_pred HHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhC-CCCCCHHHHHHHHHH----HhccCcHHHHHHHHHHHHHcCC-
Q 040394 388 VDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDD-NVSPDAVTLVSVISA----CASLGAVQVGSSLHAYSTKQGL- 461 (691)
Q Consensus 388 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~-~~~p~~~~~~~ll~~----~~~~~~~~~a~~~~~~~~~~~~- 461 (691)
+-......++++|..++.+....= .. +..+...-+...... ....|+++.+.++.+.....-.
T Consensus 422 aW~~~s~~r~~ea~~li~~l~~~l-----------~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~ 490 (894)
T COG2909 422 AWLLASQHRLAEAETLIARLEHFL-----------KAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPE 490 (894)
T ss_pred HHHHHHccChHHHHHHHHHHHHHh-----------CcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc
Confidence 334455788889888887764320 00 233333333333322 2346889999988887765421
Q ss_pred --CCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc
Q 040394 462 --LSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE 494 (691)
Q Consensus 462 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 494 (691)
..+....+..+..+..-.|++++|..+.....+
T Consensus 491 ~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 491 AAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred ccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHH
Confidence 123455566777788888999999988876654
No 365
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=70.22 E-value=29 Score=32.64 Aligned_cols=88 Identities=5% Similarity=0.045 Sum_probs=58.2
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCC-ChhHHHHHHHHhHh--
Q 040394 116 VMIRWYFLNDLYKDIVEFYKCMRKRLKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGP-DSFVLTGLVDMYAK-- 192 (691)
Q Consensus 116 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~-- 192 (691)
.=|++++..++|.+++...-+--+..-+..+......|-.|.+.+....+.++-.......-. +...|.+++..|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 346788899999999887655544322223344555566678888888888888877765433 44457766666554
Q ss_pred ---cCChHHHHHHH
Q 040394 193 ---CRDIGSSRQVF 203 (691)
Q Consensus 193 ---~g~~~~A~~~~ 203 (691)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 36777776665
No 366
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=70.13 E-value=31 Score=25.93 Aligned_cols=65 Identities=5% Similarity=0.017 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhCCChhHH
Q 040394 165 GMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDETLDKNVVSWTSMIAGYVQNDCAQEG 230 (691)
Q Consensus 165 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 230 (691)
+.++++.+.+.|.-+......+-..-...|+.+.|.++++.++ +....|...+.++...|.-+-|
T Consensus 21 ~~~v~d~ll~~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLLTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3445555555553333333333332234466666666666666 6666666666666666554433
No 367
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=69.92 E-value=7.7 Score=21.59 Aligned_cols=29 Identities=14% Similarity=-0.006 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHhCCCcHHHHHHHHHHHhC
Q 040394 635 CYYVLVSNLYASDGRWIRVNQVRELMKQR 663 (691)
Q Consensus 635 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 663 (691)
..+..++.++...|++++|...++..++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46778899999999999999999888764
No 368
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=69.66 E-value=1.1e+02 Score=29.34 Aligned_cols=59 Identities=12% Similarity=0.258 Sum_probs=34.8
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHhc-----CCCChhHHHHHHHHHHhcCCchhHHHHH
Q 040394 277 IEINSHLVTALLDMYVKCGNIRDARSVFDEL-----CSIDLVSWTAMIVGYTQSGYPDKALKLF 335 (691)
Q Consensus 277 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~a~~~~ 335 (691)
-.++..+....++.+++.+++.+-.++++.. +..|...|..+|+.....|+..-..++.
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 3455555566666666666666666666554 2235556666666666666654444443
No 369
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.45 E-value=1.7e+02 Score=31.62 Aligned_cols=177 Identities=11% Similarity=0.079 Sum_probs=99.3
Q ss_pred HHHHHHhccCCC-CCcchHHHHHHH-----HHhCCChhHHHHHHHHHHH-------cCCCCCcchHHHHHHHHcccC---
Q 040394 97 KYARSVFDSMPN-PDFYSFQVMIRW-----YFLNDLYKDIVEFYKCMRK-------RLKEHDNFVFSKVLKACCELR--- 160 (691)
Q Consensus 97 ~~A~~~~~~~~~-~~~~~~~~ll~~-----~~~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~ll~~~~~~~--- 160 (691)
..|.+.++.... .+...-..+... +...++++.|+..|+...+ .| .+.....+-.+|.+..
T Consensus 229 ~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 229 SEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCc
Confidence 455666655432 333333333322 3456788888888888876 54 3335555566665532
Q ss_pred --ChhHHHHHHHHHHHhCCCChhHHHHHHHHhHh-cCChHHHHHHHhccCCC-ChhhHHHHHHHHH----hCCChhHHHH
Q 040394 161 --DIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAK-CRDIGSSRQVFDETLDK-NVVSWTSMIAGYV----QNDCAQEGLV 232 (691)
Q Consensus 161 --~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~----~~g~~~~A~~ 232 (691)
+.+.|..++....+.|.++....-..+..... ..+...|.+.|...... ...++-.+..+|. ...+...|..
T Consensus 306 ~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~ 385 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFA 385 (552)
T ss_pred cccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHH
Confidence 56668888888888887755544443333333 34667888888776443 2333333322222 2346677888
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCC
Q 040394 233 LFNRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIGIE 278 (691)
Q Consensus 233 ~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~ 278 (691)
++++.-+.| .|-..--...+..+.. ++.+.+...+..+.+.|..
T Consensus 386 ~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 386 YYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 888877776 3332222333333334 6666666666666665543
No 370
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=69.26 E-value=54 Score=25.78 Aligned_cols=86 Identities=14% Similarity=0.190 Sum_probs=52.4
Q ss_pred ChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHHHHhhH
Q 040394 261 ALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNIRDARSVFDELCSIDLVSWTAMIVGYTQSGYPDKALKLFTDKKW 340 (691)
Q Consensus 261 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 340 (691)
..++|..|.+.+...+. ....+--.-+..+.+.|++++|+..=.....||...|-+|-. .+.|-.+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 46777777777776654 233344444566788899999944444446688888876654 577888888888887766
Q ss_pred CCCCCcHHHH
Q 040394 341 ADFFPNHVTI 350 (691)
Q Consensus 341 ~g~~p~~~t~ 350 (691)
.| .|....|
T Consensus 98 ~g-~~~~q~F 106 (116)
T PF09477_consen 98 SG-SPELQAF 106 (116)
T ss_dssp -S-SHHHHHH
T ss_pred CC-CHHHHHH
Confidence 54 3444444
No 371
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=69.13 E-value=54 Score=25.77 Aligned_cols=80 Identities=10% Similarity=-0.010 Sum_probs=49.4
Q ss_pred CChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHh
Q 040394 160 RDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDETLDKNVVSWTSMIAGYVQNDCAQEGLVLFNRMRE 239 (691)
Q Consensus 160 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 239 (691)
...++|..+.+.+...+.....+--.-+..+...|++++|+..=.....||...|-+|-. .+.|-.+++..-+.++-.
T Consensus 20 HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp T-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 456777777777776664444445555666778888888855555556678877776654 467777777777777755
Q ss_pred CC
Q 040394 240 GF 241 (691)
Q Consensus 240 ~~ 241 (691)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 43
No 372
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=69.00 E-value=40 Score=28.42 Aligned_cols=79 Identities=13% Similarity=0.115 Sum_probs=54.1
Q ss_pred hhhHHHHHHhcCCChHHHHHHhccCCC---------CCcchHHHHHHHHHhCCC-hhHHHHHHHHHHHcCCCCCcchHHH
Q 040394 82 CNTKLVSMYGSFGHVKYARSVFDSMPN---------PDFYSFQVMIRWYFLNDL-YKDIVEFYKCMRKRLKEHDNFVFSK 151 (691)
Q Consensus 82 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~ 151 (691)
..+.++.-....+++.....+++.+.. .+..+|+.++++..+... --.+..+|+.|.+.+.++++.-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 566677776777777777777766531 455677888887766555 3455667777777777777788888
Q ss_pred HHHHHcccC
Q 040394 152 VLKACCELR 160 (691)
Q Consensus 152 ll~~~~~~~ 160 (691)
+++++.+..
T Consensus 121 li~~~l~g~ 129 (145)
T PF13762_consen 121 LIKAALRGY 129 (145)
T ss_pred HHHHHHcCC
Confidence 887776543
No 373
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=68.96 E-value=25 Score=33.88 Aligned_cols=90 Identities=14% Similarity=0.070 Sum_probs=65.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 040394 571 YVCMVDLLARAGRLEEALEFMENM----PIEPD--VSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLY 644 (691)
Q Consensus 571 ~~~li~~~~~~g~~~~A~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 644 (691)
|.-=.+-|.+..++..|.+.|.+- --.|| .+.|+.=..+-...|++..++.-..+++..+|.+.-.|+.=+.++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 333456677888888888888776 12233 345555555555678899999999999999999988888888888
Q ss_pred HhCCCcHHHHHHHHHH
Q 040394 645 ASDGRWIRVNQVRELM 660 (691)
Q Consensus 645 ~~~g~~~~A~~~~~~~ 660 (691)
....++++|....+..
T Consensus 164 ~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 8888877776665544
No 374
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.88 E-value=2.1e+02 Score=32.46 Aligned_cols=130 Identities=10% Similarity=0.144 Sum_probs=60.6
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHh
Q 040394 113 SFQVMIRWYFLNDLYKDIVEFYKCMRKRLKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAK 192 (691)
Q Consensus 113 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (691)
-|..|+-.|...|..++|+++|.+.....-.-|. ...+.-..+.+.+.+.+.++....-...+ +.-
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~-------------~~~~~~e~ii~YL~~l~~~~~~Li~~y~~-wvl 571 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDS-------------FQLDGLEKIIEYLKKLGAENLDLILEYAD-WVL 571 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcccccccc-------------chhhhHHHHHHHHHHhcccchhHHHHHhh-hhh
Confidence 3777888888888888888888877653100000 00111111223333333221110000000 111
Q ss_pred cCChHHHHHHHhccCC--CChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 040394 193 CRDIGSSRQVFDETLD--KNVVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACA 257 (691)
Q Consensus 193 ~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~ 257 (691)
..+.+...++|..-.. .....-. -+-.|+.....+-+...++.+....-.++..-.+.++..|+
T Consensus 572 ~~~p~~gi~Ift~~~~~~~~sis~~-~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 572 NKNPEAGIQIFTSEDKQEAESISRD-DVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred ccCchhheeeeeccChhhhccCCHH-HHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 2334444455543100 0111111 12244566677777778887766555556666666666654
No 375
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=68.47 E-value=19 Score=29.59 Aligned_cols=73 Identities=15% Similarity=0.166 Sum_probs=50.4
Q ss_pred CCChhHHHHHHHHHHhcCChH---HHHHHHHhC-C-CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhH
Q 040394 565 VPSMKHYVCMVDLLARAGRLE---EALEFMENM-P-IEPDV--SLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYY 637 (691)
Q Consensus 565 ~p~~~~~~~li~~~~~~g~~~---~A~~~~~~~-~-~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 637 (691)
.++..+--.+..++.+..+.+ +.+.+++.. + -.|+. ...--|.-++.+.++++.+.++++..++.+|+|....
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 566666667778888776554 456667666 2 33432 2334455678889999999999999999999876544
No 376
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=67.60 E-value=9.6 Score=31.38 Aligned_cols=92 Identities=10% Similarity=0.195 Sum_probs=55.6
Q ss_pred cCCCccccc-cccccCCCCCCCCCChHHHHhhhcC-----------CCchhHHH-HHhhccCchhHHHHHHHHHHhCCCC
Q 040394 13 RTKKPKLQL-RFFSYTNQQTPTQHELDQTFASFHS-----------LPSIPCLN-LLGLCKSTGSLKAFHALLIVDGLTN 79 (691)
Q Consensus 13 ~~~~p~~a~-~~~~~~~~~~~~~~~~~~a~~~~~~-----------~~~~~~~~-ll~~~~~~~~a~~~~~~~~~~~~~~ 79 (691)
...||-..+ ++..|+....|..+.......++++ -+...+.. .+....-...+..+++.+...++..
T Consensus 17 ~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~~~~~if~~l~~~~IG~ 96 (126)
T PF08311_consen 17 EGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSSDPREIFKFLYSKGIGT 96 (126)
T ss_dssp GSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBSHHHHHHHHHHHHTTST
T ss_pred CCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHccCHHHHHHHHHHcCccH
Confidence 345676644 7777876666654433333333333 12222222 2222344558888888888888765
Q ss_pred ch--hhhHHHHHHhcCCChHHHHHHhc
Q 040394 80 DK--CNTKLVSMYGSFGHVKYARSVFD 104 (691)
Q Consensus 80 ~~--~~~~l~~~~~~~g~~~~A~~~~~ 104 (691)
.. +|......+...|++++|.++|.
T Consensus 97 ~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 97 KLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp TBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55 78888888888888888888875
No 377
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=67.52 E-value=12 Score=23.88 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=16.8
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHCC
Q 040394 503 MIGGYGMQGDGGGSLALFSDMLNEE 527 (691)
Q Consensus 503 li~~~~~~~~~~~A~~~~~~m~~~g 527 (691)
|..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5566777777777777777776543
No 378
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=67.52 E-value=1.2e+02 Score=29.27 Aligned_cols=85 Identities=9% Similarity=-0.093 Sum_probs=40.9
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHH----hcCCHHHHHHHHHhcccC-CHhHHHHHHHHHhc----CCC
Q 040394 442 SLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYA----KCGDAQSARMVFDAMREK-NTVTWSAMIGGYGM----QGD 512 (691)
Q Consensus 442 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~ 512 (691)
..++...+...+......+. + .....+...|. ...+..+|..+|...-+. .......|...|.. ..|
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~--~--~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d 128 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGD--A--AALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLD 128 (292)
T ss_pred ccccHHHHHHHHHHhhhcCC--h--HHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccC
Confidence 34566666666666665442 1 22222333332 223455566666644443 22333334444433 235
Q ss_pred hHHHHHHHHHHHHCCCCC
Q 040394 513 GGGSLALFSDMLNEEVQP 530 (691)
Q Consensus 513 ~~~A~~~~~~m~~~g~~p 530 (691)
..+|...+++..+.|..+
T Consensus 129 ~~~A~~~~~~Aa~~g~~~ 146 (292)
T COG0790 129 LVKALKYYEKAAKLGNVE 146 (292)
T ss_pred HHHHHHHHHHHHHcCChh
Confidence 556666666666655443
No 379
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=66.56 E-value=19 Score=27.74 Aligned_cols=52 Identities=10% Similarity=0.026 Sum_probs=36.5
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCC---------chhHHHHHHHHHhCCCcHHHHHHHHHHHh
Q 040394 611 GLYSRFDLGEVMIKKMLELHPDK---------ACYYVLVSNLYASDGRWIRVNQVRELMKQ 662 (691)
Q Consensus 611 ~~~g~~~~A~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 662 (691)
.+.||+..|.+.+.+..+..... ......++.+....|++++|...+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 46788888888887777622111 23345577778888999999888888765
No 380
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=66.42 E-value=80 Score=26.67 Aligned_cols=79 Identities=16% Similarity=0.148 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhc---------CCCChhHHHHHHHHHHhcCC-chhHHHHHHHhhHCCCCCcHHHHHHH
Q 040394 284 VTALLDMYVKCGNIRDARSVFDEL---------CSIDLVSWTAMIVGYTQSGY-PDKALKLFTDKKWADFFPNHVTIASV 353 (691)
Q Consensus 284 ~~~li~~~~~~g~~~~A~~~~~~~---------~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~t~~~l 353 (691)
.|.++.-....+++.....+++.+ ...+-..|.+++.+..+..- ---+..+|+-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 344444444444444444444444 12355678888888865554 33467888888888889999999999
Q ss_pred HHHHhcCCC
Q 040394 354 LSASAQLGN 362 (691)
Q Consensus 354 l~~~~~~~~ 362 (691)
+.++.+...
T Consensus 122 i~~~l~g~~ 130 (145)
T PF13762_consen 122 IKAALRGYF 130 (145)
T ss_pred HHHHHcCCC
Confidence 988776533
No 381
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=66.10 E-value=65 Score=29.67 Aligned_cols=81 Identities=10% Similarity=-0.104 Sum_probs=41.0
Q ss_pred HHhcCCHHHHHHHHHhcc--cCCHhH-HHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HhcccCCHHHH
Q 040394 476 YAKCGDAQSARMVFDAMR--EKNTVT-WSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILS-ACSHTGMVGEG 551 (691)
Q Consensus 476 ~~~~g~~~~A~~~~~~~~--~~~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~g~~~~A 551 (691)
|....+++.|...|.+.. .|...+ |+.=+..+.+.++++.+.+--.+.++ +.||.+--..++. +......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 344455556665555443 344433 33445555556666666555555544 4565544333333 34455556666
Q ss_pred HHHHHHc
Q 040394 552 WKCFYSM 558 (691)
Q Consensus 552 ~~~~~~m 558 (691)
+..+++.
T Consensus 98 I~~Lqra 104 (284)
T KOG4642|consen 98 IKVLQRA 104 (284)
T ss_pred HHHHHHH
Confidence 6555543
No 382
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=66.01 E-value=41 Score=27.78 Aligned_cols=67 Identities=7% Similarity=0.022 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh-cCCCCc-hhHHHHHHHHHhCCCcHHHHHHHHHHHhC
Q 040394 597 EPDVSLFGAFLHGCGLYS---RFDLGEVMIKKMLE-LHPDKA-CYYVLVSNLYASDGRWIRVNQVRELMKQR 663 (691)
Q Consensus 597 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 663 (691)
.++..+--.+.+++.++. |..+.+.++++..+ -.|... .+.+.|+-.+.+.|+|+.+.++.+.+++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 444444444555555433 44555666666664 334322 34444555566666666666666666553
No 383
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=65.29 E-value=9.9 Score=33.09 Aligned_cols=47 Identities=13% Similarity=0.130 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCC-----------cHHHHHHHHHHHh
Q 040394 616 FDLGEVMIKKMLELHPDKACYYVLVSNLYASDGR-----------WIRVNQVRELMKQ 662 (691)
Q Consensus 616 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~ 662 (691)
+++|+.-|++++.++|+...++..++++|...+. |++|.+.|++..+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~ 108 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD 108 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh
Confidence 5667777788888999988899888888876653 4555555555544
No 384
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=65.29 E-value=1.3e+02 Score=28.65 Aligned_cols=105 Identities=11% Similarity=-0.006 Sum_probs=53.7
Q ss_pred hcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHH----HHHhhHCCCCCcHHHHHHHHHHHhcCCChh-hHH
Q 040394 293 KCGNIRDARSVFDELCSIDLVSWTAMIVGYTQSGYPDKALKL----FTDKKWADFFPNHVTIASVLSASAQLGNLN-MGR 367 (691)
Q Consensus 293 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~ 367 (691)
+.+++++|.+++..- ...+.+.|+...|.++ ++-..+.+..+|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 455666666666442 2334555555444333 333344466666665555555444433221 122
Q ss_pred HHHHHHHH----hCCC--chhHHHHHHHHhHhcCChHHHHHHHHhCC
Q 040394 368 MVHSLGIR----LGLE--DYTVINALVDMYAKCHVIADARYIFETTS 408 (691)
Q Consensus 368 ~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 408 (691)
++.+.+++ .+.+ ++..+..+...|.+.|++.+|...|-...
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~ 117 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT 117 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC
Confidence 22222222 2233 88999999999999999999998886653
No 385
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=64.49 E-value=2.2e+02 Score=31.18 Aligned_cols=31 Identities=16% Similarity=0.327 Sum_probs=19.1
Q ss_pred HHHHHHHH-----HhcccCCHHHHHHHHHHchhhcCCCCC
Q 040394 533 VIFTTILS-----ACSHTGMVGEGWKCFYSMCRDFKFVPS 567 (691)
Q Consensus 533 ~~~~~ll~-----~~~~~g~~~~A~~~~~~m~~~~~~~p~ 567 (691)
.|+..|+. .+...|++++|++.++++ ++-|.
T Consensus 501 ~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L----~liP~ 536 (613)
T PF04097_consen 501 ETFQLLLDLAEFFDLYHAGQYEQALDIIEKL----DLIPL 536 (613)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT----T-S-S
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC
Confidence 45555544 346788999999888877 67773
No 386
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=63.21 E-value=38 Score=25.45 Aligned_cols=65 Identities=9% Similarity=0.062 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhCCCCchhhhHHHHHHhcCCChHHHHHHhccCCCCCcchHHHHHHHHHhCCChhHH
Q 040394 65 LKAFHALLIVDGLTNDKCNTKLVSMYGSFGHVKYARSVFDSMPNPDFYSFQVMIRWYFLNDLYKDI 130 (691)
Q Consensus 65 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 130 (691)
+..+++..++.|+-.......+-..-...|+.+.|++++..++ .....|...+.++...|.-.-|
T Consensus 21 ~~~v~d~ll~~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLLTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4556666666665443334443333346677888888888777 6777777777777776665544
No 387
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=63.15 E-value=1.1e+02 Score=31.11 Aligned_cols=18 Identities=17% Similarity=0.327 Sum_probs=9.4
Q ss_pred cCCChHHHHHHHHHHHHC
Q 040394 509 MQGDGGGSLALFSDMLNE 526 (691)
Q Consensus 509 ~~~~~~~A~~~~~~m~~~ 526 (691)
+.+++..|.++++++...
T Consensus 143 n~~~y~aA~~~l~~l~~r 160 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR 160 (379)
T ss_pred hcCCHHHHHHHHHHHHHh
Confidence 445555555555555544
No 388
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=62.91 E-value=1.1e+02 Score=29.89 Aligned_cols=78 Identities=18% Similarity=0.284 Sum_probs=41.0
Q ss_pred HHHHhcCChHHHHHHHHhC------CCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHh-------cCCCC-chhHHH
Q 040394 576 DLLARAGRLEEALEFMENM------PIEPDVSLF--GAFLHGCGLYSRFDLGEVMIKKMLE-------LHPDK-ACYYVL 639 (691)
Q Consensus 576 ~~~~~~g~~~~A~~~~~~~------~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~-------~~p~~-~~~~~~ 639 (691)
...-+.++.++|+++++++ ...|+...| ....+.+...||.+++.+.+.+..+ ..|+- ..+|..
T Consensus 83 ~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~l 162 (380)
T KOG2908|consen 83 VVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSL 162 (380)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHH
Confidence 3344455666666666666 234555544 3333445566777777777766655 22321 233333
Q ss_pred HHHHHHhCCCcHHH
Q 040394 640 VSNLYASDGRWIRV 653 (691)
Q Consensus 640 l~~~~~~~g~~~~A 653 (691)
-+..|...|++..+
T Consensus 163 ssqYyk~~~d~a~y 176 (380)
T KOG2908|consen 163 SSQYYKKIGDFASY 176 (380)
T ss_pred HHHHHHHHHhHHHH
Confidence 34445555666554
No 389
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=62.59 E-value=27 Score=36.34 Aligned_cols=95 Identities=12% Similarity=0.059 Sum_probs=57.7
Q ss_pred cCCHHHHHHHHHHchhhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHH
Q 040394 545 TGMVGEGWKCFYSMCRDFKFVPS--MKHYVCMVDLLARAGRLEEALEFMENM-P-IEPDVSLFGAFLHGCGLYSRFDLGE 620 (691)
Q Consensus 545 ~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~ 620 (691)
.|+...|...+... +...|- ......|...+.+.|..-+|-.++... . ....+.++..+.+++....+++.|+
T Consensus 620 ~gn~~~a~~cl~~a---~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 620 VGNSTFAIACLQRA---LNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred cCCcHHHHHHHHHH---hccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 56666666666533 234443 233444556666666666666665544 2 1223456666777777777888888
Q ss_pred HHHHHHHhcCCCCchhHHHHHH
Q 040394 621 VMIKKMLELHPDKACYYVLVSN 642 (691)
Q Consensus 621 ~~~~~~~~~~p~~~~~~~~l~~ 642 (691)
+.++++.++.|+++..-..|..
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHH
Confidence 8888888877777665554433
No 390
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=62.43 E-value=79 Score=29.92 Aligned_cols=85 Identities=11% Similarity=0.028 Sum_probs=46.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHhC--CCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHh--
Q 040394 218 IAGYVQNDCAQEGLVLFNRMREG--FVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIGIEINSHLVTALLDMYVK-- 293 (691)
Q Consensus 218 i~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-- 293 (691)
|.++++.|++.+++...-+.-+. .++|. ....-|-.|.+.+....+.++-......--.-+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 67777778887777655444321 23333 3334444566777777666666665553222233335555555443
Q ss_pred ---cCCHHHHHHHH
Q 040394 294 ---CGNIRDARSVF 304 (691)
Q Consensus 294 ---~g~~~~A~~~~ 304 (691)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 36666666655
No 391
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=61.46 E-value=2e+02 Score=29.67 Aligned_cols=42 Identities=7% Similarity=-0.119 Sum_probs=35.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhC
Q 040394 606 FLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASD 647 (691)
Q Consensus 606 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 647 (691)
..-.|...|+.-.|.+.|.++....-.+|..|..++.+|...
T Consensus 341 cG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 341 CGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 344577899999999999999998777799999999998754
No 392
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=61.27 E-value=64 Score=26.46 Aligned_cols=40 Identities=15% Similarity=0.320 Sum_probs=32.2
Q ss_pred HHHHHHHHHh--cCCCCchhHHHHHHHHHhCCCcHHHHHHHH
Q 040394 619 GEVMIKKMLE--LHPDKACYYVLVSNLYASDGRWIRVNQVRE 658 (691)
Q Consensus 619 A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 658 (691)
..++|+.|.+ +.-..+..|...+..+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5667777776 556667788889999999999999999885
No 393
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=60.93 E-value=6.6 Score=39.65 Aligned_cols=101 Identities=8% Similarity=0.038 Sum_probs=71.5
Q ss_pred HHHhcccCCHHHHHHHHHHchhhcCCCCChh-HHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCC
Q 040394 539 LSACSHTGMVGEGWKCFYSMCRDFKFVPSMK-HYVCMVDLLARAGRLEEALEFMENM-PIEPDVS-LFGAFLHGCGLYSR 615 (691)
Q Consensus 539 l~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~ 615 (691)
...+...+.++.|..++.+.+ .+.||.. .|..-..++.+.+++..|+.=..++ ...|... .|..=..++.+.++
T Consensus 11 an~~l~~~~fd~avdlysKaI---~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAI---ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHH---hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 445667788999999998664 5788744 3444447788899998887554444 6666543 44444456677788
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHH
Q 040394 616 FDLGEVMIKKMLELHPDKACYYVLVSN 642 (691)
Q Consensus 616 ~~~A~~~~~~~~~~~p~~~~~~~~l~~ 642 (691)
+.+|...|+....+.|+++.....+..
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~E 114 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKIDE 114 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHHH
Confidence 999999999999999998766655533
No 394
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=59.88 E-value=18 Score=32.76 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=28.9
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhC
Q 040394 612 LYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQR 663 (691)
Q Consensus 612 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 663 (691)
+.+|.+.+.+++.+++++.|+....|..++....++|+++.|.+-|++.++.
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 4455555555555555555555555555555555555555555555555543
No 395
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=59.50 E-value=2e+02 Score=28.97 Aligned_cols=64 Identities=19% Similarity=0.222 Sum_probs=45.9
Q ss_pred CHHHHHHH---HHHHHhcCCHHHHHHHHHHHHhcCCC-CchhHHHHHHHHH-hCCCcHHHHHHHHHHHh
Q 040394 599 DVSLFGAF---LHGCGLYSRFDLGEVMIKKMLELHPD-KACYYVLVSNLYA-SDGRWIRVNQVRELMKQ 662 (691)
Q Consensus 599 ~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 662 (691)
|...|.++ +..+.+.|-+..|.++.+-++.++|. ||......+..|+ +++.++--+++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44445444 34567889999999999999999998 7765555555544 77888878888776655
No 396
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.21 E-value=1.6e+02 Score=27.68 Aligned_cols=230 Identities=12% Similarity=0.183 Sum_probs=126.2
Q ss_pred HHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH----c
Q 040394 384 INALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLHAYSTK----Q 459 (691)
Q Consensus 384 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~ 459 (691)
.-.++..+.+.|++++....|.++..- +-++.. -.-+..+.++++.-.....+.+....+++.-.+ .
T Consensus 68 LKQmiKI~f~l~~~~eMm~~Y~qlLTY-------IkSAVT--rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdA 138 (440)
T KOG1464|consen 68 LKQMIKINFRLGNYKEMMERYKQLLTY-------IKSAVT--RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDA 138 (440)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHH-------HHHHHh--ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhh
Confidence 345667777777777777777765421 001110 112344566666666666666665555543321 1
Q ss_pred CCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC--------C-------HhHHHHHHHHHhcCCChHHHHHHHHHHH
Q 040394 460 GLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMREK--------N-------TVTWSAMIGGYGMQGDGGGSLALFSDML 524 (691)
Q Consensus 460 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~-------~~~~~~li~~~~~~~~~~~A~~~~~~m~ 524 (691)
.-...--.+-..|...|...|++....+++.++.+. | ...|..=|..|...++-.....++++..
T Consensus 139 KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 139 KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred hcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 100111223345677788888888888888877631 1 2467777888888888888888888765
Q ss_pred HC-CCCCCHHHHHHHHHHh-----cccCCHHHHHHHHHHchhhcCCC--CC---hhHHHHHHHHHHhcC----ChHHHHH
Q 040394 525 NE-EVQPNEVIFTTILSAC-----SHTGMVGEGWKCFYSMCRDFKFV--PS---MKHYVCMVDLLARAG----RLEEALE 589 (691)
Q Consensus 525 ~~-g~~p~~~~~~~ll~~~-----~~~g~~~~A~~~~~~m~~~~~~~--p~---~~~~~~li~~~~~~g----~~~~A~~ 589 (691)
.- ...|.+.... +|+-| .+.|.+++|..-|-+..+.+.-. |. ..-|-.|.+++.+.| +.++|.
T Consensus 219 hiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAK- 296 (440)
T KOG1464|consen 219 HIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAK- 296 (440)
T ss_pred HhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccC-
Confidence 42 2345554443 45544 35678888765333322443322 22 223555666676665 222221
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040394 590 FMENMPIEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLE 628 (691)
Q Consensus 590 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (691)
-....|.......|+.+| +.++..+-+++++.-..
T Consensus 297 ---PyKNdPEIlAMTnlv~aY-Q~NdI~eFE~Il~~~~~ 331 (440)
T KOG1464|consen 297 ---PYKNDPEILAMTNLVAAY-QNNDIIEFERILKSNRS 331 (440)
T ss_pred ---CCCCCHHHHHHHHHHHHH-hcccHHHHHHHHHhhhc
Confidence 012345555677788877 44566555555554333
No 397
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=58.34 E-value=20 Score=33.95 Aligned_cols=59 Identities=15% Similarity=0.233 Sum_probs=29.9
Q ss_pred HhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhH
Q 040394 579 ARAGRLEEALEFMENM-PIEPDV-SLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYY 637 (691)
Q Consensus 579 ~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 637 (691)
.+.|+.++|..+|+.. ...|+. .....+..-.-..++.-+|.++|-+++...|.+....
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseAL 187 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEAL 187 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHH
Confidence 3556666666666554 334432 2333333333344555666666666666666655433
No 398
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=58.24 E-value=55 Score=26.59 Aligned_cols=58 Identities=10% Similarity=0.194 Sum_probs=42.7
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHH
Q 040394 516 SLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMV 575 (691)
Q Consensus 516 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 575 (691)
..+-+..+....+.|++......+++|-+.+|+..|.++|+.+..+ +.+....|..++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 4455666667778999999999999999999999999999987433 334344555554
No 399
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=58.13 E-value=19 Score=29.45 Aligned_cols=42 Identities=14% Similarity=0.260 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHhCCCCch--hhhHHHHHHhcCCChHHHHHHhc
Q 040394 63 GSLKAFHALLIVDGLTNDK--CNTKLVSMYGSFGHVKYARSVFD 104 (691)
Q Consensus 63 ~~a~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~ 104 (691)
+..+.++..+.++++-... +|......+...|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3345556666555554333 55555566666666666665553
No 400
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=58.05 E-value=51 Score=34.49 Aligned_cols=132 Identities=11% Similarity=0.028 Sum_probs=90.2
Q ss_pred CCCHHHHHHHHHHhcc--cCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHH-hcCChHHHHHHHHhC-CCCCCH--HH
Q 040394 529 QPNEVIFTTILSACSH--TGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLA-RAGRLEEALEFMENM-PIEPDV--SL 602 (691)
Q Consensus 529 ~p~~~~~~~ll~~~~~--~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~~-~~~p~~--~~ 602 (691)
-|+..+..+++.-... ...-+-+-.++-.| ++ ...|--.+.| +...|. -.|+...|...+... ..+|.. +.
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~-~~-~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAI-NK-PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHh-cC-CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 3566665555443322 12234455555555 22 2333322222 233444 468999999988877 445532 35
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhC
Q 040394 603 FGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQR 663 (691)
Q Consensus 603 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 663 (691)
...|.+...+.|-...|-.++.+.+.+....+-+++.++++|....+.+.|++.++...+.
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 5667778888899999999999999988777899999999999999999999999887764
No 401
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=57.65 E-value=51 Score=27.74 Aligned_cols=64 Identities=13% Similarity=0.042 Sum_probs=46.2
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCc
Q 040394 584 LEEALEFMENMPIEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRW 650 (691)
Q Consensus 584 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 650 (691)
.+.|.++.+-||. ..............|++..|.++.+.+...+|+|.......+.+|.+.|.-
T Consensus 57 ~~~A~~~v~l~GG---~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 57 EEEAKRYVELAGG---ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 3567777777752 233444555667899999999999999999999999888888887766543
No 402
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=57.20 E-value=36 Score=30.56 Aligned_cols=36 Identities=14% Similarity=0.250 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 040394 596 IEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHP 631 (691)
Q Consensus 596 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 631 (691)
..|+...+..++.++...|+.++|.+..+++....|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 445666666666666666666666666666666666
No 403
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=57.00 E-value=21 Score=23.96 Aligned_cols=29 Identities=3% Similarity=-0.041 Sum_probs=23.6
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHHhCC
Q 040394 636 YYVLVSNLYASDGRWIRVNQVRELMKQRG 664 (691)
Q Consensus 636 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 664 (691)
..+.++..+.+.|++++|.+..+.+++..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 45667788999999999999999998753
No 404
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=56.44 E-value=65 Score=26.19 Aligned_cols=53 Identities=13% Similarity=0.225 Sum_probs=41.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHH
Q 040394 586 EALEFMENMPIEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYV 638 (691)
Q Consensus 586 ~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 638 (691)
+++.-+-.+..-|++.....-+++|.+-+|+..|..+++-....-++....|-
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~ 122 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYP 122 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHH
Confidence 34444444578899999999999999999999999999998876655454443
No 405
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=56.29 E-value=1.8e+02 Score=31.69 Aligned_cols=182 Identities=13% Similarity=0.213 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHcCCCCC---chhHHHHHHHHHHhcCCHHHHHHHHHhccc-CCHh----------HHHHHHHHHhcCCCh
Q 040394 448 VGSSLHAYSTKQGLLSS---NVYVGTALLNFYAKCGDAQSARMVFDAMRE-KNTV----------TWSAMIGGYGMQGDG 513 (691)
Q Consensus 448 ~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~----------~~~~li~~~~~~~~~ 513 (691)
+-..++.+|...-- .| .+.+...++-.|-...+++...++.+.++. ||.. .|.-.+.--.+-||-
T Consensus 181 ~l~~~L~~mR~RlD-np~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDR 259 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLD-NPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDR 259 (1226)
T ss_pred HHHHHHHHHHhhcC-CccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccH
Confidence 33455666665432 33 345566677778888888888888888764 4322 222223333456788
Q ss_pred HHHHHHHHHHHHC-C-CCCCHHH-----HHHHH--HHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCC-
Q 040394 514 GGSLALFSDMLNE-E-VQPNEVI-----FTTIL--SACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGR- 583 (691)
Q Consensus 514 ~~A~~~~~~m~~~-g-~~p~~~~-----~~~ll--~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~- 583 (691)
++|+.+.-.|.+. | +.||... |.-+. +.|...+..+.|.+.|+ +.+.+.|+...--.+...+..+|.
T Consensus 260 akAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~Wyr---kaFeveP~~~sGIN~atLL~aaG~~ 336 (1226)
T KOG4279|consen 260 AKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYR---KAFEVEPLEYSGINLATLLRAAGEH 336 (1226)
T ss_pred HHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHH---HHhccCchhhccccHHHHHHHhhhh
Confidence 8888877766653 2 5576532 32222 24455667778888888 556778874432222222333332
Q ss_pred hHHHHHH------HHhC-CCCC---CHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 040394 584 LEEALEF------MENM-PIEP---DVSLFG---AFLHGCGLYSRFDLGEVMIKKMLELHPDK 633 (691)
Q Consensus 584 ~~~A~~~------~~~~-~~~p---~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 633 (691)
++.-.++ +..+ +.+- ....|. ....+-.-.+|+.+|.+.-+.|.++.|..
T Consensus 337 Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 337 FENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred ccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 2222211 1111 1111 111111 12233345689999999999999999884
No 406
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=55.49 E-value=1e+02 Score=24.52 Aligned_cols=28 Identities=11% Similarity=0.310 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHh
Q 040394 212 VSWTSMIAGYVQNDCAQEGLVLFNRMRE 239 (691)
Q Consensus 212 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 239 (691)
.-|..|+..|...|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3588888889899999999999988876
No 407
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=55.27 E-value=45 Score=29.92 Aligned_cols=58 Identities=17% Similarity=0.007 Sum_probs=41.2
Q ss_pred HHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 040394 537 TILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENM 594 (691)
Q Consensus 537 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 594 (691)
..+.......+.+......+...+.....|+..+|..++.++...|+.++|.+..+++
T Consensus 113 ~~l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 113 ALLLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333334566666666555555555567788888888888888888888888888877
No 408
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=54.13 E-value=2.1e+02 Score=27.47 Aligned_cols=60 Identities=17% Similarity=0.059 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCC
Q 040394 349 TIASVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTS 408 (691)
Q Consensus 349 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 408 (691)
++......|...|.+.+|.++.+...+.++-+...+-.++..+...|+--.+.+.++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344455678889999999999999999998899999999999999999877777777654
No 409
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=53.72 E-value=3.3e+02 Score=29.63 Aligned_cols=24 Identities=8% Similarity=0.263 Sum_probs=14.6
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHH
Q 040394 112 YSFQVMIRWYFLNDLYKDIVEFYKC 136 (691)
Q Consensus 112 ~~~~~ll~~~~~~~~~~~a~~~~~~ 136 (691)
.-|+ .+..+.-+|+++.|.+++..
T Consensus 150 ~FW~-~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 150 DFWD-YVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp HHHH-HHHHHHHTT-HHHHHHHH-T
T ss_pred hHHH-HHHHHHHcCCHHHHHHHHHh
Confidence 3444 56666777778877777743
No 410
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=53.21 E-value=70 Score=32.44 Aligned_cols=27 Identities=15% Similarity=0.103 Sum_probs=15.6
Q ss_pred chhHHHHHHHHHhCCCcHHHHHHHHHH
Q 040394 634 ACYYVLVSNLYASDGRWIRVNQVRELM 660 (691)
Q Consensus 634 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 660 (691)
.++++.++-+|.-.++|.+|++.|...
T Consensus 164 is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 164 ISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666666666655544
No 411
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=51.55 E-value=57 Score=25.05 Aligned_cols=51 Identities=12% Similarity=0.192 Sum_probs=31.8
Q ss_pred HhcCChHHHHHHHHhC------CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040394 579 ARAGRLEEALEFMENM------PIEPD-----VSLFGAFLHGCGLYSRFDLGEVMIKKMLEL 629 (691)
Q Consensus 579 ~~~g~~~~A~~~~~~~------~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (691)
.+.|++.+|.+.+.+. ...+. ......+.......|+.++|...+++++++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4566777776555554 11112 123333445566789999999999999874
No 412
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=51.54 E-value=2.3e+02 Score=27.21 Aligned_cols=65 Identities=12% Similarity=0.159 Sum_probs=32.9
Q ss_pred hhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040394 560 RDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENM----PIEPDVSLFGAFLHGCGLYSRFDLGEVMIK 624 (691)
Q Consensus 560 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 624 (691)
..++-.++..+...++..+++.+++.+-.+++... +...|...|..++......||..-...+..
T Consensus 194 ~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 194 STFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred hccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 33344444555555555555555555555555554 122344455555555555555554444444
No 413
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=51.46 E-value=1.8e+02 Score=28.04 Aligned_cols=44 Identities=11% Similarity=0.033 Sum_probs=29.0
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHH
Q 040394 231 LVLFNRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILK 274 (691)
Q Consensus 231 ~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~ 274 (691)
.++|+.|.+.++.|.-..|..+.-.+.+.=.+..+..+|+.+..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 34566666666777766666666666666666677777766654
No 414
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=51.27 E-value=41 Score=19.75 Aligned_cols=27 Identities=15% Similarity=0.445 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 040394 615 RFDLGEVMIKKMLELHPDKACYYVLVSN 642 (691)
Q Consensus 615 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 642 (691)
.++.|..+|++.+...|+ +..|...+.
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAk 28 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAK 28 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 578888999998888887 666665543
No 415
>PHA02875 ankyrin repeat protein; Provisional
Probab=51.20 E-value=2.9e+02 Score=28.37 Aligned_cols=54 Identities=13% Similarity=0.004 Sum_probs=24.8
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChhH---HHHHHHHHHhcCCchhHHHHHHHhhHCCCCCcH
Q 040394 290 MYVKCGNIRDARSVFDELCSIDLVS---WTAMIVGYTQSGYPDKALKLFTDKKWADFFPNH 347 (691)
Q Consensus 290 ~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 347 (691)
..+..|+.+-+.-+++.-..++... ..+.+...+..|+. ++.+.+.+.|..++.
T Consensus 174 ~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~----~iv~~Ll~~gad~n~ 230 (413)
T PHA02875 174 IAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKI----DIVRLFIKRGADCNI 230 (413)
T ss_pred HHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCH----HHHHHHHHCCcCcch
Confidence 3445566666665555543332211 12233333444544 334444556666654
No 416
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=50.83 E-value=60 Score=21.18 Aligned_cols=34 Identities=12% Similarity=0.079 Sum_probs=25.6
Q ss_pred HhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040394 507 YGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILS 540 (691)
Q Consensus 507 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 540 (691)
..+.|-.+++..++++|.+.|+..+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456777788888888888888888877776664
No 417
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=50.50 E-value=3.8e+02 Score=29.46 Aligned_cols=14 Identities=14% Similarity=0.076 Sum_probs=11.2
Q ss_pred hccCcHHHHHHHHH
Q 040394 441 ASLGAVQVGSSLHA 454 (691)
Q Consensus 441 ~~~~~~~~a~~~~~ 454 (691)
...|+.+.|...|.
T Consensus 415 q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 415 QSTGDLEAALYQYQ 428 (608)
T ss_pred HHcCCHHHHHHHHh
Confidence 35688999999887
No 418
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=50.19 E-value=4.7e+02 Score=30.44 Aligned_cols=79 Identities=13% Similarity=-0.103 Sum_probs=36.8
Q ss_pred CChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCH-HHHHHHHHhcCCCChhHHHHHHHHH
Q 040394 244 GNQITLGSLVTACAKLRALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNI-RDARSVFDELCSIDLVSWTAMIVGY 322 (691)
Q Consensus 244 p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~li~~~ 322 (691)
+|..+-...+..+.+.+..+ +...+....+ .++..+-...+.++.+.+.. .....+...+..+|..+-...+.++
T Consensus 633 ~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~aL 708 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDVL 708 (897)
T ss_pred CCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHHH
Confidence 56666666666666666543 3333333332 33444444555555444321 1112222333345555555555555
Q ss_pred HhcC
Q 040394 323 TQSG 326 (691)
Q Consensus 323 ~~~g 326 (691)
...+
T Consensus 709 ~~~~ 712 (897)
T PRK13800 709 RALR 712 (897)
T ss_pred Hhhc
Confidence 5443
No 419
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.13 E-value=4.4e+02 Score=30.09 Aligned_cols=26 Identities=31% Similarity=0.431 Sum_probs=15.5
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHhhH
Q 040394 315 WTAMIVGYTQSGYPDKALKLFTDKKW 340 (691)
Q Consensus 315 ~~~li~~~~~~g~~~~a~~~~~~m~~ 340 (691)
|..|+.-|...|+.++|++++.+..+
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 55556666666666666666665544
No 420
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=49.70 E-value=2e+02 Score=25.94 Aligned_cols=36 Identities=8% Similarity=0.051 Sum_probs=27.9
Q ss_pred HhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHH
Q 040394 497 TVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEV 533 (691)
Q Consensus 497 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 533 (691)
....+.++..+...||++.|-++|.-+.... ..|..
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR 76 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIR 76 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChH
Confidence 4567778888999999999999999888753 44544
No 421
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=49.36 E-value=2.2e+02 Score=26.34 Aligned_cols=126 Identities=13% Similarity=0.145 Sum_probs=66.2
Q ss_pred HHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCC
Q 040394 384 INALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLS 463 (691)
Q Consensus 384 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 463 (691)
....+..|++.-++.-|....+++.++ -. -...+--|.+..+.+--.++.+-....++ +
T Consensus 133 lRRtMEiyS~ttRFalaCN~s~KIiEP------------------IQ--SRCAiLRysklsd~qiL~Rl~~v~k~Ekv-~ 191 (333)
T KOG0991|consen 133 LRRTMEIYSNTTRFALACNQSEKIIEP------------------IQ--SRCAILRYSKLSDQQILKRLLEVAKAEKV-N 191 (333)
T ss_pred HHHHHHHHcccchhhhhhcchhhhhhh------------------HH--hhhHhhhhcccCHHHHHHHHHHHHHHhCC-C
Confidence 345566777777777666666665433 00 01112223344444444455554555554 5
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcc----------------cCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCC
Q 040394 464 SNVYVGTALLNFYAKCGDAQSARMVFDAMR----------------EKNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEE 527 (691)
Q Consensus 464 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 527 (691)
.+..-..+++ +...|+...|+.-++.-. +|.+.....++.. |..+++++|.+++.++-+.|
T Consensus 192 yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~-~~~~~~~~A~~il~~lw~lg 268 (333)
T KOG0991|consen 192 YTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQA-CLKRNIDEALKILAELWKLG 268 (333)
T ss_pred CCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHH-HHhccHHHHHHHHHHHHHcC
Confidence 5544444443 456777777776665432 2333344444443 33456677777777777777
Q ss_pred CCCCHH
Q 040394 528 VQPNEV 533 (691)
Q Consensus 528 ~~p~~~ 533 (691)
+.|...
T Consensus 269 ysp~Di 274 (333)
T KOG0991|consen 269 YSPEDI 274 (333)
T ss_pred CCHHHH
Confidence 666543
No 422
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=48.66 E-value=5e+02 Score=30.26 Aligned_cols=93 Identities=11% Similarity=-0.006 Sum_probs=43.2
Q ss_pred CchHHHHHHHHHHHhcCCHHHHH-HHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCcHHHHHHHHHHH
Q 040394 279 INSHLVTALLDMYVKCGNIRDAR-SVFDELCSIDLVSWTAMIVGYTQSGYPDKALKLFTDKKWADFFPNHVTIASVLSAS 357 (691)
Q Consensus 279 ~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 357 (691)
+|..+-...+.++.+.|..+.+. .+...+..++...-...+.++.+.+. +++...+..+.+ .|+...=...+.++
T Consensus 787 ~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL 862 (897)
T PRK13800 787 PDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT---DPHLDVRKAAVLAL 862 (897)
T ss_pred CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc---CCCHHHHHHHHHHH
Confidence 45555566666666666544332 23333344454444445555555544 334444444432 34444444555555
Q ss_pred hcCCChhhHHHHHHHHHH
Q 040394 358 AQLGNLNMGRMVHSLGIR 375 (691)
Q Consensus 358 ~~~~~~~~a~~~~~~~~~ 375 (691)
........+...+..+.+
T Consensus 863 ~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 863 TRWPGDPAARDALTTALT 880 (897)
T ss_pred hccCCCHHHHHHHHHHHh
Confidence 554223334444443333
No 423
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=48.55 E-value=56 Score=21.34 Aligned_cols=31 Identities=19% Similarity=0.297 Sum_probs=16.1
Q ss_pred ccCChhhHHHHHHHHHHHCCCCchHHHHHHH
Q 040394 258 KLRALHQGKWLHGYILKIGIEINSHLVTALL 288 (691)
Q Consensus 258 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 288 (691)
+.|-++++...++.|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444445555555555555555555554444
No 424
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=48.23 E-value=2.7e+02 Score=27.14 Aligned_cols=93 Identities=8% Similarity=0.086 Sum_probs=47.6
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHchhh---cCCCCChhHHHHHHH-HHH----hcCChHHHHHHHHhCC---CCCCHHH
Q 040394 534 IFTTILSACSHTGMVGEGWKCFYSMCRD---FKFVPSMKHYVCMVD-LLA----RAGRLEEALEFMENMP---IEPDVSL 602 (691)
Q Consensus 534 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~---~~~~p~~~~~~~li~-~~~----~~g~~~~A~~~~~~~~---~~p~~~~ 602 (691)
.+.....-|++.||-+.|.+.+.+..++ .|.+.|+..+..-+. .|. -...+++|..++++-+ -+.-..+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 3444455677788887777776654222 244445433332221 122 2345566666666663 1112234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040394 603 FGAFLHGCGLYSRFDLGEVMIKKMLE 628 (691)
Q Consensus 603 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (691)
|..+ .|....++.+|-.+|-+...
T Consensus 186 Y~Gl--y~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 186 YQGL--YCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHH--HHHHHHhHHHHHHHHHHHcc
Confidence 4333 23345567777777766554
No 425
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=47.44 E-value=2.8e+02 Score=27.00 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhcCCCCchhHH
Q 040394 618 LGEVMIKKMLELHPDKACYYV 638 (691)
Q Consensus 618 ~A~~~~~~~~~~~p~~~~~~~ 638 (691)
.|.+.+.++.+.+|.-+.+..
T Consensus 380 ~AvEAihRAvEFNPHVPkYLL 400 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPKYLL 400 (556)
T ss_pred HHHHHHHHHhhcCCCCcHHHH
Confidence 467778888888888665554
No 426
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=47.01 E-value=7.4e+02 Score=31.78 Aligned_cols=105 Identities=8% Similarity=0.029 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--C--------CCCCHHH
Q 040394 533 VIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENM--P--------IEPDVSL 602 (691)
Q Consensus 533 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~--------~~p~~~~ 602 (691)
.+|-...+.+-+.|.++.|....-.. .+.+ .| ..+--....+...|+...|+.++++. . .++.+..
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A-~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~ 1746 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNA-KESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQS 1746 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhh-hhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchh
Confidence 45666666666778888887665544 2212 22 33444556677788888887777665 1 1111222
Q ss_pred HHHHHHH--------H-HhcC--CHHHHHHHHHHHHhcCCCCchhHHHHH
Q 040394 603 FGAFLHG--------C-GLYS--RFDLGEVMIKKMLELHPDKACYYVLVS 641 (691)
Q Consensus 603 ~~~l~~~--------~-~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~l~ 641 (691)
-+.++.. | ...| ..+..+..|+++.+..|.....++.++
T Consensus 1747 ~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1747 VNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred hhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 2222221 1 1222 345567777888888885455554454
No 427
>PRK10941 hypothetical protein; Provisional
Probab=46.59 E-value=1.8e+02 Score=27.85 Aligned_cols=68 Identities=12% Similarity=0.035 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHH
Q 040394 571 YVCMVDLLARAGRLEEALEFMENM-PIEPD-VSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYV 638 (691)
Q Consensus 571 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 638 (691)
.+.+-.+|.+.++++.|+...+.+ ...|+ +.-+.--.-.|.+-|.+..|..-++..++..|+++..-.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 445667788888888888888887 44454 445666666788889999999999999888888775544
No 428
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=46.25 E-value=3.3e+02 Score=27.48 Aligned_cols=31 Identities=16% Similarity=0.179 Sum_probs=21.1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 040394 463 SSNVYVGTALLNFYAKCGDAQSARMVFDAMR 493 (691)
Q Consensus 463 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 493 (691)
|-...+...+...+...|+.+.|.+++++..
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566666667777777777777777666543
No 429
>PRK13342 recombination factor protein RarA; Reviewed
Probab=46.11 E-value=3.6e+02 Score=27.87 Aligned_cols=42 Identities=17% Similarity=0.121 Sum_probs=24.5
Q ss_pred HHHHHHHHHh---CCChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 040394 214 WTSMIAGYVQ---NDCAQEGLVLFNRMREGFVEGNQITLGSLVTA 255 (691)
Q Consensus 214 ~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~ 255 (691)
+..++.++.+ .++++.|+..+..|.+.|..|....-..++.+
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3344444443 46777777777777777766654444444433
No 430
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=45.84 E-value=1.3e+02 Score=23.93 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=19.3
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHH
Q 040394 113 SFQVMIRWYFLNDLYKDIVEFYKCMRK 139 (691)
Q Consensus 113 ~~~~ll~~~~~~~~~~~a~~~~~~m~~ 139 (691)
-|..|+..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 367777777777777777777777665
No 431
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=45.25 E-value=1.4e+02 Score=22.83 Aligned_cols=40 Identities=13% Similarity=-0.014 Sum_probs=24.3
Q ss_pred HHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhccCC
Q 040394 169 HCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDETLD 208 (691)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 208 (691)
++.-....|.|....-.+...+...|++++|++.+-++.+
T Consensus 11 l~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 11 LEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344445555777777777777777777777776666544
No 432
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=45.22 E-value=1.4e+02 Score=32.48 Aligned_cols=116 Identities=19% Similarity=0.237 Sum_probs=74.1
Q ss_pred HHHHHHHHhccc----CC---HhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHH----------HHHHHHHhccc
Q 040394 483 QSARMVFDAMRE----KN---TVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVI----------FTTILSACSHT 545 (691)
Q Consensus 483 ~~A~~~~~~~~~----~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~----------~~~ll~~~~~~ 545 (691)
++-...+++|.+ |+ ..+-..++-.|....+++..+++.+.+.. -||..- |...++---+-
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~ 256 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRP 256 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCC
Confidence 444556666764 33 34566778888889999999999999987 454322 22222222356
Q ss_pred CCHHHHHHHHHHchhhcC-CCCChh-----HHHHH--HHHHHhcCChHHHHHHHHhC-CCCCCHH
Q 040394 546 GMVGEGWKCFYSMCRDFK-FVPSMK-----HYVCM--VDLLARAGRLEEALEFMENM-PIEPDVS 601 (691)
Q Consensus 546 g~~~~A~~~~~~m~~~~~-~~p~~~-----~~~~l--i~~~~~~g~~~~A~~~~~~~-~~~p~~~ 601 (691)
|+-+.|+...-.++++.| +.||.. +|.-+ -..|..++..+.|.++|++. ...|+..
T Consensus 257 GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~ 321 (1226)
T KOG4279|consen 257 GDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEY 321 (1226)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhh
Confidence 888888887766665544 566643 23222 22355667778889999887 6777654
No 433
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=45.05 E-value=69 Score=19.38 Aligned_cols=14 Identities=7% Similarity=-0.012 Sum_probs=5.9
Q ss_pred HHHhcCCHHHHHHH
Q 040394 609 GCGLYSRFDLGEVM 622 (691)
Q Consensus 609 ~~~~~g~~~~A~~~ 622 (691)
.+...|++++|+.+
T Consensus 10 ~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 10 NFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHTT-HHHHHHH
T ss_pred HHHHHhhHHHHHHH
Confidence 33444444444444
No 434
>PRK09857 putative transposase; Provisional
Probab=44.05 E-value=1.3e+02 Score=29.19 Aligned_cols=65 Identities=9% Similarity=0.074 Sum_probs=50.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCCCcc
Q 040394 603 FGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRGLSK 667 (691)
Q Consensus 603 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 667 (691)
+..++......++.++-.++++...+..|........++.-+.+.|.-+++.++.++|+..|+..
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 44556555677887777888877777677766677788888888898888999999999998854
No 435
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=42.69 E-value=3.3e+02 Score=26.65 Aligned_cols=127 Identities=13% Similarity=0.047 Sum_probs=65.8
Q ss_pred CCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC
Q 040394 527 EVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENM-------PIEPD 599 (691)
Q Consensus 527 g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~ 599 (691)
.+..|..-++.|..+- ...+++-.+..+...+..|-.--...+-....-||+-|+.+.|++.+.+. |.+-|
T Consensus 65 ~i~~D~~~l~~m~~~n--eeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiD 142 (393)
T KOG0687|consen 65 VIKLDQDLLNSMKKAN--EEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKID 142 (393)
T ss_pred ceeccHHHHHHHHHhh--HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchh
Confidence 3555666666665432 22333333333433233233223456666778899999999999988775 55666
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCC-----CCchhHHHHHHHHHhCCCcHHHHHHHHH
Q 040394 600 VSLFGAFLHGCGLYSRFDLGEVMIKKMLE---LHP-----DKACYYVLVSNLYASDGRWIRVNQVREL 659 (691)
Q Consensus 600 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 659 (691)
...+ +++.-.--+|.+-..+.++++.. ..- |.-.+|. +-.+....++.+|-.+|-.
T Consensus 143 Vvf~--~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~--Gly~msvR~Fk~Aa~Lfld 206 (393)
T KOG0687|consen 143 VVFY--KIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQ--GLYCMSVRNFKEAADLFLD 206 (393)
T ss_pred hHHH--HHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHH--HHHHHHHHhHHHHHHHHHH
Confidence 6544 33332233444444444444433 221 1122333 2334556677777776643
No 436
>PHA03100 ankyrin repeat protein; Provisional
Probab=42.27 E-value=3.9e+02 Score=28.13 Aligned_cols=13 Identities=15% Similarity=0.212 Sum_probs=5.6
Q ss_pred hcCChHHHHHHHh
Q 040394 192 KCRDIGSSRQVFD 204 (691)
Q Consensus 192 ~~g~~~~A~~~~~ 204 (691)
..|+.+-...+++
T Consensus 117 ~~~~~~iv~~Ll~ 129 (480)
T PHA03100 117 KSNSYSIVEYLLD 129 (480)
T ss_pred ccChHHHHHHHHH
Confidence 4444444444443
No 437
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=42.23 E-value=44 Score=31.96 Aligned_cols=41 Identities=24% Similarity=0.235 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCcHHHHHHHH
Q 040394 314 SWTAMIVGYTQSGYPDKALKLFTDKKWADFFPNHVTIASVL 354 (691)
Q Consensus 314 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 354 (691)
-|+.-|..-.+.|++++|+.++++.+..|+.--..+|..-+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 46677888888888888888888888888776666664433
No 438
>PRK12798 chemotaxis protein; Reviewed
Probab=42.15 E-value=3.9e+02 Score=27.22 Aligned_cols=185 Identities=16% Similarity=0.192 Sum_probs=116.5
Q ss_pred hcCCHHHHHHHHHhccc----CCHhHHHHHHHHH-hcCCChHHHHHHHHHHHHCCCCCCHHH----HHHHHHHhcccCCH
Q 040394 478 KCGDAQSARMVFDAMRE----KNTVTWSAMIGGY-GMQGDGGGSLALFSDMLNEEVQPNEVI----FTTILSACSHTGMV 548 (691)
Q Consensus 478 ~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~-~~~~~~~~A~~~~~~m~~~g~~p~~~~----~~~ll~~~~~~g~~ 548 (691)
-.|+.+++.+.+..+.. +....|-.|+.+- ....++..|+++|+...- .-|.... ..--+......|+.
T Consensus 124 ~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~ 201 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDA 201 (421)
T ss_pred HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcH
Confidence 36899999999988874 3455677777664 456789999999998775 3555433 33334456788998
Q ss_pred HHHHHHHHHchhhcCCCCChhHHH-HHHHHHHhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040394 549 GEGWKCFYSMCRDFKFVPSMKHYV-CMVDLLARAG---RLEEALEFMENMPIEPDVSLFGAFLHGCGLYSRFDLGEVMIK 624 (691)
Q Consensus 549 ~~A~~~~~~m~~~~~~~p~~~~~~-~li~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 624 (691)
+++..+-..-.+.+...|=..-|. .+...+.+.+ ..+.-.+++..|.-.--...|..+.+.-...|+.+.|.-.-+
T Consensus 202 ~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 202 DKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888766665555555555432222 2333333333 344556666666433345688888888889999999999999
Q ss_pred HHHhcCCCCchhHHHHHHHHH-----hCCCcHHHHHHHHHHHhCCC
Q 040394 625 KMLELHPDKACYYVLVSNLYA-----SDGRWIRVNQVRELMKQRGL 665 (691)
Q Consensus 625 ~~~~~~p~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~~g~ 665 (691)
+++.+... ...-...+.+|. -..+.+++.+.+..+-...+
T Consensus 282 ~A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L 326 (421)
T PRK12798 282 RALKLADP-DSADAARARLYRGAALVASDDAESALEELSQIDRDKL 326 (421)
T ss_pred HHHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhC
Confidence 99986543 222222223332 34557777666665544433
No 439
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=41.72 E-value=2.3e+02 Score=27.79 Aligned_cols=79 Identities=18% Similarity=0.133 Sum_probs=49.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccc-------CCHhHHH--HHHHHHhcCCChHHHHHHHHHHHH-----CCCCCCHHH-H
Q 040394 471 ALLNFYAKCGDAQSARMVFDAMRE-------KNTVTWS--AMIGGYGMQGDGGGSLALFSDMLN-----EEVQPNEVI-F 535 (691)
Q Consensus 471 ~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~--~li~~~~~~~~~~~A~~~~~~m~~-----~g~~p~~~~-~ 535 (691)
.++...-+.++.++|.+.++++.+ |+.+.|. ...+.+...||..++.+++++..+ .|++|+..+ |
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Confidence 334444555677777777777653 4555443 355667778888888888888877 677776653 4
Q ss_pred HHHHH-HhcccCCHH
Q 040394 536 TTILS-ACSHTGMVG 549 (691)
Q Consensus 536 ~~ll~-~~~~~g~~~ 549 (691)
+.+-. -|-..|++.
T Consensus 160 Y~lssqYyk~~~d~a 174 (380)
T KOG2908|consen 160 YSLSSQYYKKIGDFA 174 (380)
T ss_pred HHHHHHHHHHHHhHH
Confidence 44433 333344443
No 440
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.61 E-value=4.6e+02 Score=27.93 Aligned_cols=161 Identities=13% Similarity=0.093 Sum_probs=83.9
Q ss_pred cCCChHHHHHHHHHHHHCCCCCCH------------HHHHHHHHHhcccCCHHHHHHHHHHchhhc------CCCC----
Q 040394 509 MQGDGGGSLALFSDMLNEEVQPNE------------VIFTTILSACSHTGMVGEGWKCFYSMCRDF------KFVP---- 566 (691)
Q Consensus 509 ~~~~~~~A~~~~~~m~~~g~~p~~------------~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~------~~~p---- 566 (691)
...-+++|...|.-.... ..|+. .+.-.+...|...|+.+.|..+.++.+-.. .+.|
T Consensus 250 hs~sYeqaq~~F~~av~~-~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~ 328 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIV-HDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGN 328 (665)
T ss_pred cchHHHHHHHHHHHHHhh-cCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccc
Confidence 344566676666655543 23322 233344446677788777777766432110 1111
Q ss_pred ---------ChhHHHHH---HHHHHhcCChHHHHHHHHhC-CCCC--CHHHHHHHHHHHH-hcCCHHHHHHHHHHHHh--
Q 040394 567 ---------SMKHYVCM---VDLLARAGRLEEALEFMENM-PIEP--DVSLFGAFLHGCG-LYSRFDLGEVMIKKMLE-- 628 (691)
Q Consensus 567 ---------~~~~~~~l---i~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~-- 628 (691)
|...|-+| +..+.+.|-+..|+++.+-+ ...| |+.....+|..|+ +..++.-.+++++....
T Consensus 329 cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n 408 (665)
T KOG2422|consen 329 CRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMN 408 (665)
T ss_pred ccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Confidence 12223222 34456677777777776665 4444 4555566666664 56677777777776633
Q ss_pred ---cCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCCCccCCCee
Q 040394 629 ---LHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRGLSKSPGCS 672 (691)
Q Consensus 629 ---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 672 (691)
.-|+ ..+-..|+..|.+...-+ +.+.-.-.....+.--|++.
T Consensus 409 ~l~~~PN-~~yS~AlA~f~l~~~~~~-~rqsa~~~l~qAl~~~P~vl 453 (665)
T KOG2422|consen 409 KLSQLPN-FGYSLALARFFLRKNEED-DRQSALNALLQALKHHPLVL 453 (665)
T ss_pred cHhhcCC-chHHHHHHHHHHhcCChh-hHHHHHHHHHHHHHhCcHHH
Confidence 3455 555555666655543332 33333333333344444433
No 441
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=41.28 E-value=56 Score=20.10 Aligned_cols=28 Identities=11% Similarity=0.078 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHhCCCcHHHHHHHHHHHh
Q 040394 635 CYYVLVSNLYASDGRWIRVNQVRELMKQ 662 (691)
Q Consensus 635 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 662 (691)
.+|..|+.+-...++|++|.+-|++.++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4677888888899999999888887765
No 442
>PHA02875 ankyrin repeat protein; Provisional
Probab=41.08 E-value=4.2e+02 Score=27.23 Aligned_cols=42 Identities=17% Similarity=0.104 Sum_probs=19.5
Q ss_pred HHHHHHHCCCCchHH---HHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 040394 269 HGYILKIGIEINSHL---VTALLDMYVKCGNIRDARSVFDELCSI 310 (691)
Q Consensus 269 ~~~~~~~g~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~ 310 (691)
.+.+.+.|..++... ..+++...+..|+.+-+.-+++.-..+
T Consensus 184 v~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~ 228 (413)
T PHA02875 184 CKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADC 228 (413)
T ss_pred HHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCc
Confidence 334445555544321 123444445556666555555544333
No 443
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=40.47 E-value=4.1e+02 Score=26.92 Aligned_cols=54 Identities=11% Similarity=-0.138 Sum_probs=33.0
Q ss_pred HHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH----Hh--cccCCHHHHHHHHHH
Q 040394 504 IGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILS----AC--SHTGMVGEGWKCFYS 557 (691)
Q Consensus 504 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~----~~--~~~g~~~~A~~~~~~ 557 (691)
+..+.+.+++..|.++|+++.....+|+...+...+. +| ...-++++|.+.++.
T Consensus 137 ~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 137 ARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 3445667888889999999888766555544332222 22 234456666666653
No 444
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=39.92 E-value=81 Score=28.32 Aligned_cols=88 Identities=11% Similarity=0.007 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh-HHHHHHHHHhCCCcHHHHHHHHHHHhCCCccCCCeeEEEeCCee
Q 040394 602 LFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACY-YVLVSNLYASDGRWIRVNQVRELMKQRGLSKSPGCSLVDLDIAN 680 (691)
Q Consensus 602 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~~~~~~~ 680 (691)
....++..|...||++.|-+.|--+++..+-|... |-.=+.++.+.+.-....++++.|...=.....-.........+
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~~~~~~~~~~~ 122 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAFNQYYNRRIIA 122 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhccchhhhhccc
Confidence 34556666666777777777777666654443332 22223345555554444466666654221111122222333345
Q ss_pred eEEeeeccc
Q 040394 681 DFSFSRVVS 689 (691)
Q Consensus 681 ~~~~~~~~~ 689 (691)
++|.+|+..
T Consensus 123 pvfrsGs~t 131 (199)
T PF04090_consen 123 PVFRSGSRT 131 (199)
T ss_pred ccccCCCcc
Confidence 666666543
No 445
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=39.17 E-value=61 Score=29.62 Aligned_cols=56 Identities=23% Similarity=0.294 Sum_probs=36.4
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 040394 578 LARAGRLEEALEFMENM-PIEP-DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDK 633 (691)
Q Consensus 578 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 633 (691)
..+.++.+.|.+++.+. ...| ....|-.+...-.+.|+++.|.+.+++.++++|++
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34556666666666665 3333 34466666666667777777777777777777665
No 446
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.13 E-value=6.2e+02 Score=28.64 Aligned_cols=53 Identities=6% Similarity=-0.024 Sum_probs=30.2
Q ss_pred HHHHhHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHH
Q 040394 186 LVDMYAKCRDIGSSRQVFDETLDKNVVSWTSMIAGYVQNDCAQEGLVLFNRMR 238 (691)
Q Consensus 186 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 238 (691)
+-..|...|+++.|.+.-..-++.=...+..=...+.+.+++..|-++|.++.
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~ 416 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAETL 416 (911)
T ss_pred HHHHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 33456667777777776655311111123333345566677777777777763
No 447
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=39.10 E-value=2.8e+02 Score=24.72 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=15.5
Q ss_pred HHHHHHHccCChhhHHHHHHHHHHH
Q 040394 251 SLVTACAKLRALHQGKWLHGYILKI 275 (691)
Q Consensus 251 ~li~~~~~~~~~~~a~~~~~~~~~~ 275 (691)
+++..|-+.-++.+..++++.|.+.
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el 161 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHEL 161 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666777776666554
No 448
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=38.45 E-value=4.5e+02 Score=26.82 Aligned_cols=83 Identities=19% Similarity=0.171 Sum_probs=60.3
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHH--------HHhcCCHHHHHHHHHhccc--
Q 040394 425 NVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNF--------YAKCGDAQSARMVFDAMRE-- 494 (691)
Q Consensus 425 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~-- 494 (691)
.+.||.++.+-+...++..-..+....+|+--.+++ .|-...+.+++-. -.+....+++.++++.|..
T Consensus 178 kitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa--DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L 255 (669)
T KOG3636|consen 178 KITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA--DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQL 255 (669)
T ss_pred ccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhc
Confidence 689999999988888888888888889999888887 4444444433321 1345667899999999984
Q ss_pred --CCHhHHHHHHHHHhc
Q 040394 495 --KNTVTWSAMIGGYGM 509 (691)
Q Consensus 495 --~~~~~~~~li~~~~~ 509 (691)
.|+.-+..|..-|+.
T Consensus 256 ~~eDvpDffsLAqyY~~ 272 (669)
T KOG3636|consen 256 SVEDVPDFFSLAQYYSD 272 (669)
T ss_pred ccccchhHHHHHHHHhh
Confidence 366667777766653
No 449
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=38.26 E-value=38 Score=27.85 Aligned_cols=33 Identities=12% Similarity=0.164 Sum_probs=24.5
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 040394 221 YVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTA 255 (691)
Q Consensus 221 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~ 255 (691)
....|.-.+|..+|++|+++|-+||. |+.|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 34557778889999999999988874 5555554
No 450
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=37.95 E-value=4.3e+02 Score=28.00 Aligned_cols=56 Identities=18% Similarity=0.154 Sum_probs=34.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcccC--CHh---HHHHHHHHHhcCCChHHHHHHHHHHHH
Q 040394 470 TALLNFYAKCGDAQSARMVFDAMREK--NTV---TWSAMIGGYGMQGDGGGSLALFSDMLN 525 (691)
Q Consensus 470 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---~~~~li~~~~~~~~~~~A~~~~~~m~~ 525 (691)
..++.-|.+.+++++|..++..|.=. ... +.+.+++.+.+..--++....++.+.-
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 45677888999999999999888732 222 333344555555444444555555443
No 451
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=37.93 E-value=94 Score=22.95 Aligned_cols=45 Identities=11% Similarity=0.018 Sum_probs=28.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhH---HHHHHHHHhCCCcHHHHHH
Q 040394 612 LYSRFDLGEVMIKKMLELHPDKACYY---VLVSNLYASDGRWIRVNQV 656 (691)
Q Consensus 612 ~~g~~~~A~~~~~~~~~~~p~~~~~~---~~l~~~~~~~g~~~~A~~~ 656 (691)
...+.++|+..|+++++..++.+.-+ -.+..+|+..|++.++.++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777655544333 3445566677777766655
No 452
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=37.90 E-value=32 Score=23.98 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=9.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 040394 604 GAFLHGCGLYSRFDLGEVMIKKM 626 (691)
Q Consensus 604 ~~l~~~~~~~g~~~~A~~~~~~~ 626 (691)
..++.++...|++++|.++++++
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 33444444444444444444443
No 453
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=37.69 E-value=1.6e+02 Score=25.92 Aligned_cols=26 Identities=15% Similarity=0.358 Sum_probs=13.9
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHH
Q 040394 576 DLLARAGRLEEALEFMENMPIEPDVS 601 (691)
Q Consensus 576 ~~~~~~g~~~~A~~~~~~~~~~p~~~ 601 (691)
-.|.+.|.+++|.+++++.-..|+..
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~d~~~~ 144 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFSDPESQ 144 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhcCCCch
Confidence 34556666666666666652244433
No 454
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=37.14 E-value=3.6e+02 Score=26.25 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=9.2
Q ss_pred HHHHHhcCCHHHHHHHHHhc
Q 040394 288 LDMYVKCGNIRDARSVFDEL 307 (691)
Q Consensus 288 i~~~~~~g~~~~A~~~~~~~ 307 (691)
..+.-+.|+..+|.+.|+.+
T Consensus 282 AMCARklGrlrEA~K~~RDL 301 (556)
T KOG3807|consen 282 AMCARKLGRLREAVKIMRDL 301 (556)
T ss_pred HHHHHHhhhHHHHHHHHHHH
Confidence 33333445555555555444
No 455
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.12 E-value=59 Score=35.88 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=20.3
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040394 580 RAGRLEEALEFMENMPIEPDVSLFGAFLHGCGLYSRFDLGEVMIKKM 626 (691)
Q Consensus 580 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 626 (691)
.+|+++.|++.-++.+ |...|..|+.....+|+.+-|+..|++.
T Consensus 655 e~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~ 698 (1202)
T KOG0292|consen 655 ECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRT 698 (1202)
T ss_pred hcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHh
Confidence 4444444444444432 3344444444444444444444444443
No 456
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=37.08 E-value=3.6e+02 Score=27.30 Aligned_cols=137 Identities=7% Similarity=-0.045 Sum_probs=82.8
Q ss_pred HhHHHHHHHH--HhcCCChHHHHHHHHHHHHCCCCCCHHHHHHH--------HHHhcccCCHHHHHHHHHHchhhcCCCC
Q 040394 497 TVTWSAMIGG--YGMQGDGGGSLALFSDMLNEEVQPNEVIFTTI--------LSACSHTGMVGEGWKCFYSMCRDFKFVP 566 (691)
Q Consensus 497 ~~~~~~li~~--~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l--------l~~~~~~g~~~~A~~~~~~m~~~~~~~p 566 (691)
+..|-.++.. +...+++.+|.++-+.....-..-|..|+..+ -.++...|+...-..++....+...+.-
T Consensus 124 i~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrh 203 (493)
T KOG2581|consen 124 IEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRH 203 (493)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcC
Confidence 3345444433 34467888888887776654333444444332 2344556776666666666555555555
Q ss_pred Ch----hHHHHHHHHHHhcCChHHHHHHHHhCCCCCCH--HHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 040394 567 SM----KHYVCMVDLLARAGRLEEALEFMENMPIEPDV--SLF----GAFLHGCGLYSRFDLGEVMIKKMLELHPDK 633 (691)
Q Consensus 567 ~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~--~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 633 (691)
|. ...|.|++.|...+.++.|..+..+...+.+. .-| --+.....-++++..|.+.+-++....|++
T Consensus 204 d~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 204 DEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred cchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 53 34566667777778888888888887422211 111 223333456788888888888888888873
No 457
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=36.74 E-value=62 Score=31.01 Aligned_cols=35 Identities=14% Similarity=0.115 Sum_probs=23.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhh
Q 040394 214 WTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQIT 248 (691)
Q Consensus 214 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 248 (691)
|+..|....+.||+++|+.++++..+.|+.--..|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~t 294 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARST 294 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHH
Confidence 56677777777777777777777777665533333
No 458
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=36.35 E-value=7.1e+02 Score=28.52 Aligned_cols=57 Identities=14% Similarity=0.165 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHH
Q 040394 531 NEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEA 587 (691)
Q Consensus 531 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 587 (691)
|..++..-..-+...|++..|.+++.++.++.+-.++...|..++..+...|.-..|
T Consensus 1230 dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~H~~ 1286 (1304)
T KOG1114|consen 1230 DSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWNHLA 1286 (1304)
T ss_pred CchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCchHhH
Confidence 334444444444556777778887777777777777777777777766666665443
No 459
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=35.76 E-value=1.2e+02 Score=21.78 Aligned_cols=33 Identities=6% Similarity=0.033 Sum_probs=25.7
Q ss_pred cHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhc
Q 040394 445 AVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKC 479 (691)
Q Consensus 445 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 479 (691)
+.+.|..++..+.... ..++..||++...+.+.
T Consensus 12 DtEmA~~mL~DLr~de--kRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDE--KRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchh--hcChHHHHHHHHHHHHc
Confidence 5677888888887766 67889999888877665
No 460
>PF13934 ELYS: Nuclear pore complex assembly
Probab=34.50 E-value=3.8e+02 Score=24.84 Aligned_cols=105 Identities=22% Similarity=0.183 Sum_probs=52.4
Q ss_pred HHHHHHHHHh--cCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHH
Q 040394 499 TWSAMIGGYG--MQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMV 575 (691)
Q Consensus 499 ~~~~li~~~~--~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li 575 (691)
.|..+++++. .++++++|.+.+-.- .+.|+... .++.++...|+.+.|..+++.+ +-.++ ......++
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~----~p~l~s~~~~~~~~ 148 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFPD--KILQALLRRGDPKLALRYLRAV----GPPLSSPEALTLYF 148 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccHH--HHHHHHHHCCChhHHHHHHHhc----CCCCCCHHHHHHHH
Confidence 3444555543 456666666665221 12222221 3555666667777777777654 11111 22222223
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 040394 576 DLLARAGRLEEALEFMENMPIEPDVSLFGAFLHGCGLY 613 (691)
Q Consensus 576 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 613 (691)
.. ..++.+.+|..+-+....+-....+..++..+...
T Consensus 149 ~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~ 185 (226)
T PF13934_consen 149 VA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEE 185 (226)
T ss_pred HH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHH
Confidence 33 55677777777766664322234555566555543
No 461
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=34.22 E-value=2.4e+02 Score=22.52 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHH
Q 040394 618 LGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVREL 659 (691)
Q Consensus 618 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 659 (691)
.+.+.+.+...+.|+.......++.-+.....|+++..--++
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~ 103 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKR 103 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 456677777778888766666666655555556666555443
No 462
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=34.03 E-value=5.2e+02 Score=26.32 Aligned_cols=56 Identities=11% Similarity=0.081 Sum_probs=39.4
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCcc--hHHHHHHHHc--ccCChhHHHHHHHHHHHh
Q 040394 119 RWYFLNDLYKDIVEFYKCMRKRLKEHDNF--VFSKVLKACC--ELRDIDEGMKVHCEIVKV 175 (691)
Q Consensus 119 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 175 (691)
..+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455789999999999999887 555554 3444445443 456778888888877664
No 463
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=34.01 E-value=1.5e+02 Score=26.17 Aligned_cols=48 Identities=10% Similarity=0.138 Sum_probs=34.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHH
Q 040394 604 GAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIR 652 (691)
Q Consensus 604 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 652 (691)
...+..|.+.|.+++|.+++++..+ +|++...-.-|..+-.+...+..
T Consensus 115 ~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~ 162 (200)
T cd00280 115 EQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHP 162 (200)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccH
Confidence 3456679999999999999999998 77766665555554444444333
No 464
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=33.57 E-value=63 Score=26.68 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=23.2
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 040394 122 FLNDLYKDIVEFYKCMRKRLKEHDNFVFSKVLKAC 156 (691)
Q Consensus 122 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 156 (691)
...|.-.+|-.+|+.|++.|-+||. |+.|+...
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3456677788888888888877764 66666543
No 465
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.19 E-value=5.3e+02 Score=26.16 Aligned_cols=171 Identities=12% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHHHHHhHhcCChHHHHHHHhccCC------CChhhHHHHHHHHHhCCChhHHHHHHHHHHhC---------CCCCCh
Q 040394 182 VLTGLVDMYAKCRDIGSSRQVFDETLD------KNVVSWTSMIAGYVQNDCAQEGLVLFNRMREG---------FVEGNQ 246 (691)
Q Consensus 182 ~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------~~~p~~ 246 (691)
.+.-+.+.|..+|+++.|.+.+.+..+ .-+..|-.+|..-...|+|........+.... .+.+-.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Q ss_pred hhHHHHHHHHHccCChhhHHHHHHHHHHHCC-----CCchHHHHHHHHHHHhcCCHHHHHHHHHhc-----CCCChhHHH
Q 040394 247 ITLGSLVTACAKLRALHQGKWLHGYILKIGI-----EINSHLVTALLDMYVKCGNIRDARSVFDEL-----CSIDLVSWT 316 (691)
Q Consensus 247 ~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~~~~~~~~~ 316 (691)
..+..+...+.+ .....|...+..-..... .|...+.-..+.++.--++-+--+.+.... .+-.+..+.
T Consensus 232 ~C~agLa~L~lk-kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pqlr~ 310 (466)
T KOG0686|consen 232 KCAAGLANLLLK-KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQLRE 310 (466)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHHHH
Q ss_pred HHHHHHHhcCCchhHHHHHHHhhHC-----CCCCcHHHHHHHHH
Q 040394 317 AMIVGYTQSGYPDKALKLFTDKKWA-----DFFPNHVTIASVLS 355 (691)
Q Consensus 317 ~li~~~~~~g~~~~a~~~~~~m~~~-----g~~p~~~t~~~ll~ 355 (691)
.+.+-|. +++...++++++++.. =+.|...+.-.+|.
T Consensus 311 il~~fy~--sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 311 ILFKFYS--SKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred HHHHHhh--hhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
No 466
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=32.94 E-value=5.4e+02 Score=26.13 Aligned_cols=130 Identities=15% Similarity=0.155 Sum_probs=75.9
Q ss_pred chhHHHHHHHH--HHhcCCHHHHHHHHHhccc----CCHhHHHHHH--------HHHhcCCChHHHHHHHHHHHH-CCCC
Q 040394 465 NVYVGTALLNF--YAKCGDAQSARMVFDAMRE----KNTVTWSAMI--------GGYGMQGDGGGSLALFSDMLN-EEVQ 529 (691)
Q Consensus 465 ~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~----~~~~~~~~li--------~~~~~~~~~~~A~~~~~~m~~-~g~~ 529 (691)
....|-.++-. +....++.+|.++-+.... -|..++..+. .+|-..|+......++..... .-+.
T Consensus 123 Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLr 202 (493)
T KOG2581|consen 123 EIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLR 202 (493)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhc
Confidence 34455444433 3345778888887776553 2555555432 234456666666666655443 2233
Q ss_pred CC----HHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHH-------HHHHHhcCChHHHHHHHHhC-CCC
Q 040394 530 PN----EVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCM-------VDLLARAGRLEEALEFMENM-PIE 597 (691)
Q Consensus 530 p~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~-~~~ 597 (691)
-| ....|.+++.|...+.++.|..+..+. .-|....-+.. .....-.+++..|.+.|-.. ...
T Consensus 203 hd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~-----~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka 277 (493)
T KOG2581|consen 203 HDEEGQAVLINLLLRNYLHNKLYDQADKLVSKS-----VYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA 277 (493)
T ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcc-----cCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence 23 345677888899999999999887754 34543332222 22334467888888877666 334
Q ss_pred CC
Q 040394 598 PD 599 (691)
Q Consensus 598 p~ 599 (691)
|.
T Consensus 278 pq 279 (493)
T KOG2581|consen 278 PQ 279 (493)
T ss_pred cc
Confidence 43
No 467
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=32.79 E-value=89 Score=32.02 Aligned_cols=104 Identities=16% Similarity=0.165 Sum_probs=73.3
Q ss_pred HHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhc
Q 040394 504 IGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTIL-SACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARA 581 (691)
Q Consensus 504 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~ 581 (691)
...+...++++.|..++.+.++ +.||...|...= .++.+.+++..|+.=+.... .+.|+ ...|-.=..++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kai---e~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAI---ELDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhh---hcCchhhheeeeccHHHHhH
Confidence 4556678899999999999998 588877655443 68889999988887666443 34565 33333334445555
Q ss_pred CChHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 040394 582 GRLEEALEFMENM-PIEPDVSLFGAFLHGCGL 612 (691)
Q Consensus 582 g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~ 612 (691)
+++.+|+..|+.. ...|+..-....+.-|-.
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 6777777777776 688888877777776643
No 468
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=32.66 E-value=2.7e+02 Score=22.62 Aligned_cols=60 Identities=13% Similarity=0.073 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh-------cCCCCchhHH----HHHHHHHhCCCcHHHHHHHHHH
Q 040394 601 SLFGAFLHGCGLYSRFDLGEVMIKKMLE-------LHPDKACYYV----LVSNLYASDGRWIRVNQVRELM 660 (691)
Q Consensus 601 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~p~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~ 660 (691)
..+..|..++...|+++++..-.+.++. ++.+....|. .-+.++...|+.++|...|+..
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 3445555666677777766666655553 4444433332 3345667788888888777654
No 469
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=32.56 E-value=4.5e+02 Score=25.14 Aligned_cols=132 Identities=11% Similarity=0.066 Sum_probs=73.5
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCcch-------HHHHHHHHcccCChhHHHHHHHHH----HHhCCC-ChhHHHH
Q 040394 118 IRWYFLNDLYKDIVEFYKCMRKRLKEHDNFV-------FSKVLKACCELRDIDEGMKVHCEI----VKVGGP-DSFVLTG 185 (691)
Q Consensus 118 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-------~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~-~~~~~~~ 185 (691)
.+-..+.+++++|+..|.+...+|+..+..+ ...+.+.|.+.|+...-.+..... .....| ...+..+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 3445667888888888888888887665543 445566677777665544333322 222223 4555555
Q ss_pred HHHHhHhcC-ChHHHHHHHhccCC----CC-----hhhHHHHHHHHHhCCChhHHHHHHH----HHHhCCCCCChhhH
Q 040394 186 LVDMYAKCR-DIGSSRQVFDETLD----KN-----VVSWTSMIAGYVQNDCAQEGLVLFN----RMREGFVEGNQITL 249 (691)
Q Consensus 186 l~~~~~~~g-~~~~A~~~~~~~~~----~~-----~~~~~~li~~~~~~g~~~~A~~~~~----~m~~~~~~p~~~t~ 249 (691)
|+..+-... .++.-..+.+...+ .+ ...-..+|..+.+.|++.+|+.+.. ++++.+-+|+..+.
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v 167 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV 167 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence 555554432 34444444443322 01 1122356777788888888887554 34444455554443
No 470
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=32.50 E-value=4e+02 Score=28.22 Aligned_cols=57 Identities=11% Similarity=0.208 Sum_probs=34.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcC--CCChh---HHHHHHHHHHhcCCchhHHHHHHHhhHC
Q 040394 285 TALLDMYVKCGNIRDARSVFDELC--SIDLV---SWTAMIVGYTQSGYPDKALKLFTDKKWA 341 (691)
Q Consensus 285 ~~li~~~~~~g~~~~A~~~~~~~~--~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~ 341 (691)
..++.-|.+.+++++|..++..|. .-... +.+.+...+.+..--++....++.+...
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 356677889999999999998881 11222 3444455555554445555555555443
No 471
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=32.47 E-value=2.1e+02 Score=30.78 Aligned_cols=74 Identities=8% Similarity=0.051 Sum_probs=51.9
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHhcccCCHH------HHHHHHHHchhhcCCCCChhHHHH
Q 040394 502 AMIGGYGMQGDGGGSLALFSDMLNE--EVQPNEVIFTTILSACSHTGMVG------EGWKCFYSMCRDFKFVPSMKHYVC 573 (691)
Q Consensus 502 ~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~------~A~~~~~~m~~~~~~~p~~~~~~~ 573 (691)
+|..+|...|++..+.++++..... |-+.=...||..|+...+.|.++ .|.+.++.. .+.-|..||..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a----~ln~d~~t~al 108 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA----RLNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh----hcCCcchHHHH
Confidence 6888999999999999999888763 33334467888888888888754 333444432 46677778877
Q ss_pred HHHHHH
Q 040394 574 MVDLLA 579 (691)
Q Consensus 574 li~~~~ 579 (691)
|+.+-.
T Consensus 109 l~~~sl 114 (1117)
T COG5108 109 LCQASL 114 (1117)
T ss_pred HHHhhc
Confidence 766544
No 472
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=32.14 E-value=85 Score=21.86 Aligned_cols=46 Identities=11% Similarity=0.049 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHh
Q 040394 616 FDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQ 662 (691)
Q Consensus 616 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 662 (691)
.+...++++.+....-+ ..-...++..|...|++++|.++++.+.+
T Consensus 6 ~~~~~~~~~~lR~~RHD-~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQRHD-FLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444444444333222 33445566889999999999999988865
No 473
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=32.08 E-value=1.2e+03 Score=30.03 Aligned_cols=65 Identities=8% Similarity=-0.044 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCCCc
Q 040394 600 VSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRGLS 666 (691)
Q Consensus 600 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 666 (691)
..+|....+.....|.++.|...+-.+.+..+ +..+.-.+..+...|+-..|..++++.++....
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 35888888889999999999999888887663 567777788999999999999999999875543
No 474
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=31.33 E-value=6.1e+02 Score=26.30 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=34.4
Q ss_pred CChhHHHHHHHHHHHcCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhC
Q 040394 125 DLYKDIVEFYKCMRKRLKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVG 176 (691)
Q Consensus 125 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 176 (691)
+.+++-+++++.+.+.| .+| ....-|.+|.+.+++++|..-+++-.+.|
T Consensus 68 ~~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~~ 116 (480)
T TIGR01503 68 ALLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESIKAG 116 (480)
T ss_pred CcHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhhhcC
Confidence 35677777777777765 222 34445778888888888888888877644
No 475
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=31.19 E-value=1.4e+02 Score=22.15 Aligned_cols=13 Identities=0% Similarity=0.146 Sum_probs=5.2
Q ss_pred hcCChHHHHHHHh
Q 040394 192 KCRDIGSSRQVFD 204 (691)
Q Consensus 192 ~~g~~~~A~~~~~ 204 (691)
+.|+++-...+++
T Consensus 6 ~~~~~~~~~~ll~ 18 (89)
T PF12796_consen 6 QNGNLEILKFLLE 18 (89)
T ss_dssp HTTTHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 3344444443433
No 476
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=31.14 E-value=4.8e+02 Score=25.03 Aligned_cols=28 Identities=7% Similarity=0.221 Sum_probs=20.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 040394 567 SMKHYVCMVDLLARAGRLEEALEFMENM 594 (691)
Q Consensus 567 ~~~~~~~li~~~~~~g~~~~A~~~~~~~ 594 (691)
....+..+..-|++.++.+.+.+++.+.
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~ 141 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRL 141 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 3556677778888888888887776654
No 477
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.13 E-value=1.7e+02 Score=31.38 Aligned_cols=58 Identities=9% Similarity=0.028 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHH
Q 040394 604 GAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMK 661 (691)
Q Consensus 604 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 661 (691)
..|.-+|....+.+.|.++++++.+.+|.++-.-..........|+-++|...+....
T Consensus 398 R~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 398 RALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIK 455 (872)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 3333344444555555555555555555544444444444455555555555444443
No 478
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.93 E-value=1.7e+02 Score=22.75 Aligned_cols=43 Identities=7% Similarity=0.065 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 040394 596 IEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLV 640 (691)
Q Consensus 596 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 640 (691)
++|... ..|.-.|.+.|+.+.|.+-|+.=..+.|.+..+...|
T Consensus 70 vpPG~H--AhLGlLys~~G~~e~a~~eFetEKalFPES~~fmDFL 112 (121)
T COG4259 70 VPPGYH--AHLGLLYSNSGKDEQAVREFETEKALFPESGVFMDFL 112 (121)
T ss_pred CCCcHH--HHHHHHHhhcCChHHHHHHHHHhhhhCccchhHHHHH
Confidence 444443 3455567788888888888888777888855554444
No 479
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=30.73 E-value=1.2e+02 Score=29.23 Aligned_cols=82 Identities=11% Similarity=0.061 Sum_probs=0.0
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHH
Q 040394 562 FKFVPSMKHYVCMVDLLARAGRLEEALEFMENM--PIEPDVSLFGA-FLHGCGLYSRFDLGEVMIKKMLELHPDKACYYV 638 (691)
Q Consensus 562 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 638 (691)
..+.-|+..|...+.-..+.|.+.+.-.++.+. .-+.|...|-. .-.-+...++++.++.++.+.++++|++|..|.
T Consensus 101 nkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 101 NKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Q ss_pred HHHHH
Q 040394 639 LVSNL 643 (691)
Q Consensus 639 ~l~~~ 643 (691)
.....
T Consensus 181 eyfr~ 185 (435)
T COG5191 181 EYFRM 185 (435)
T ss_pred HHHHH
No 480
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.50 E-value=6.7e+02 Score=26.47 Aligned_cols=23 Identities=4% Similarity=-0.074 Sum_probs=11.5
Q ss_pred hCCChhHHHHHHHHHHhCCCCCC
Q 040394 223 QNDCAQEGLVLFNRMREGFVEGN 245 (691)
Q Consensus 223 ~~g~~~~A~~~~~~m~~~~~~p~ 245 (691)
..++++.|+.++.+|...|..|.
T Consensus 255 ~~~d~~~Al~~l~~ll~~Gedp~ 277 (472)
T PRK14962 255 FNGDVKRVFTVLDDVYYSGKDYE 277 (472)
T ss_pred HcCCHHHHHHHHHHHHHcCCCHH
Confidence 34555555555555555544443
No 481
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=30.35 E-value=1.9e+02 Score=27.42 Aligned_cols=55 Identities=13% Similarity=0.119 Sum_probs=36.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHh
Q 040394 608 HGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQ 662 (691)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 662 (691)
..+.+.++++.|....++.+.++|+++.-..--+.+|.+.|-+.-|++-++...+
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 3455666777777777777777777666666666667777776666666666444
No 482
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=30.17 E-value=4e+02 Score=27.42 Aligned_cols=39 Identities=15% Similarity=0.278 Sum_probs=27.4
Q ss_pred CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 040394 595 PIEPDV--SLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDK 633 (691)
Q Consensus 595 ~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 633 (691)
+..|.- -++..-+..+.+.+++..|-.+.++++++.|..
T Consensus 293 ~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 293 KLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp ---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred CCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 444433 356667777889999999999999999999873
No 483
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.50 E-value=2.7e+02 Score=21.64 Aligned_cols=26 Identities=19% Similarity=0.196 Sum_probs=14.9
Q ss_pred chhHHHHHHHHHhCCCcHHHHHHHHH
Q 040394 634 ACYYVLVSNLYASDGRWIRVNQVREL 659 (691)
Q Consensus 634 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 659 (691)
|.++..|+.+|.+.|+-+.|.+-|+.
T Consensus 72 PG~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 72 PGYHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred CcHHHHHHHHHhhcCChHHHHHHHHH
Confidence 45555566666666666666555544
No 484
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=29.16 E-value=2.5e+02 Score=21.11 Aligned_cols=62 Identities=11% Similarity=0.107 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHhHHHHHHHHHhcCCChHHH
Q 040394 450 SSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMREKNTVTWSAMIGGYGMQGDGGGS 516 (691)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 516 (691)
..++..+.+.|+ -+..... ..-....+.+.+.++++.++..+...|..+..++...|...-|
T Consensus 19 ~~v~~~L~~~~V--lt~~~~e---~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGV--FTPDMIE---EIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCC--CCHHHHH---HHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 346667777775 2222222 2223456688888888888888888888888888877765444
No 485
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.10 E-value=7.4e+02 Score=26.54 Aligned_cols=49 Identities=14% Similarity=0.080 Sum_probs=23.8
Q ss_pred cCcHHHHHHHHHHHHHcCC-------CCCchhHHHHH---HHHHHhcCCHHHHHHHHHh
Q 040394 443 LGAVQVGSSLHAYSTKQGL-------LSSNVYVGTAL---LNFYAKCGDAQSARMVFDA 491 (691)
Q Consensus 443 ~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l---~~~~~~~g~~~~A~~~~~~ 491 (691)
...++++...|......-. ...++.+..+| ..++-..|+.+.|..++++
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR 309 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIER 309 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHH
Confidence 4456677777666554321 01223333333 3445556665555444443
No 486
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=28.96 E-value=2.2e+02 Score=26.80 Aligned_cols=54 Identities=4% Similarity=-0.220 Sum_probs=27.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC------CCchhHHHHHHHHHhCCCcHHHHHHHHH
Q 040394 606 FLHGCGLYSRFDLGEVMIKKMLELHP------DKACYYVLVSNLYASDGRWIRVNQVREL 659 (691)
Q Consensus 606 l~~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 659 (691)
+..-|.+.|++++|..+++.+..... -...+...+..++.+.|+.++...+.=+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 44445556666666666666543211 1123344455566666666666555433
No 487
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=28.51 E-value=2e+02 Score=27.38 Aligned_cols=67 Identities=7% Similarity=-0.030 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCCC
Q 040394 599 DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELH------PDKACYYVLVSNLYASDGRWIRVNQVRELMKQRGL 665 (691)
Q Consensus 599 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 665 (691)
...+|..+...|++-+|.+.+.+.+.+..+.. -+-.-+-..++.+|....-.++..+..+-|.++|-
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGg 186 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGG 186 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC
Confidence 34578888888999999999999888877621 22122334455556555556666666666666654
No 488
>PF13934 ELYS: Nuclear pore complex assembly
Probab=28.09 E-value=4.9e+02 Score=24.12 Aligned_cols=85 Identities=9% Similarity=0.015 Sum_probs=44.3
Q ss_pred HHHHHhc--ccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 040394 537 TILSACS--HTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENMPIEPDVSLFGAFLHGCGLYS 614 (691)
Q Consensus 537 ~ll~~~~--~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g 614 (691)
..++++. ..+++++|.+.+-.- .+.|+- -.-++.++.+.|+.+.|+.+++..+-.++...-..+......++
T Consensus 81 ~~~~g~W~LD~~~~~~A~~~L~~p----s~~~~~--~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~La~~ 154 (226)
T PF13934_consen 81 KFIQGFWLLDHGDFEEALELLSHP----SLIPWF--PDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVALANG 154 (226)
T ss_pred HHHHHHHHhChHhHHHHHHHhCCC----CCCccc--HHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHHHHcC
Confidence 3444443 346666776665322 223331 11356666667777788888877753333322222222225566
Q ss_pred CHHHHHHHHHHHH
Q 040394 615 RFDLGEVMIKKML 627 (691)
Q Consensus 615 ~~~~A~~~~~~~~ 627 (691)
.+.+|..+.+...
T Consensus 155 ~v~EAf~~~R~~~ 167 (226)
T PF13934_consen 155 LVTEAFSFQRSYP 167 (226)
T ss_pred CHHHHHHHHHhCc
Confidence 7777766655433
No 489
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=27.92 E-value=1.2e+02 Score=30.55 Aligned_cols=29 Identities=14% Similarity=0.100 Sum_probs=13.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 040394 606 FLHGCGLYSRFDLGEVMIKKMLELHPDKA 634 (691)
Q Consensus 606 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 634 (691)
|+.+|.+.++.+.|.....+-+.++|..+
T Consensus 234 lv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 234 LVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 33344444444444444444444444433
No 490
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.90 E-value=78 Score=30.88 Aligned_cols=83 Identities=14% Similarity=0.092 Sum_probs=39.4
Q ss_pred hcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCCh-hHHHHHHHHHHhcCChHH
Q 040394 508 GMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSM-KHYVCMVDLLARAGRLEE 586 (691)
Q Consensus 508 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~ 586 (691)
...|.++.|++.+...+... +|....|..--+++.+.++...|++=++.. ..+.||. .-|-.-..+..-.|++++
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A---~ein~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFA---IEINPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhh---hccCcccccccchhhHHHHHhhchHH
Confidence 34555666666666665542 333344444445555555555555555432 2344442 222222222333455555
Q ss_pred HHHHHHhC
Q 040394 587 ALEFMENM 594 (691)
Q Consensus 587 A~~~~~~~ 594 (691)
|...+...
T Consensus 201 aa~dl~~a 208 (377)
T KOG1308|consen 201 AAHDLALA 208 (377)
T ss_pred HHHHHHHH
Confidence 55554444
No 491
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=27.62 E-value=3.4e+02 Score=22.97 Aligned_cols=65 Identities=9% Similarity=-0.003 Sum_probs=0.0
Q ss_pred hHHHHHHHhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC
Q 040394 196 IGSSRQVFDETLDKNVVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLR 260 (691)
Q Consensus 196 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~ 260 (691)
..++.+.+.+-.-+-+..-..++..+.+.++.-.|.++++++.+.+...+..|.-..+..+...|
T Consensus 5 ~~~~~~~lk~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 5 LEDAIERLKEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
No 492
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=27.38 E-value=1.7e+03 Score=30.27 Aligned_cols=398 Identities=10% Similarity=0.024 Sum_probs=0.0
Q ss_pred HHHHHHhCCC-hhHHHHHHHHHHhCC----CCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCCCchHHHHHHHHHH
Q 040394 217 MIAGYVQNDC-AQEGLVLFNRMREGF----VEGNQITLGSLVTACAKLRALHQGKWLHGYILKIGIEINSHLVTALLDMY 291 (691)
Q Consensus 217 li~~~~~~g~-~~~A~~~~~~m~~~~----~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 291 (691)
|+..+.+.-. |-.++.+++...... .+++.....++...|....+.|.=-.+|+.- -...=+...-.|
T Consensus 2420 Li~yl~kt~~~wh~~I~lLE~~~~~~~~~~~~~~~~~~dsl~elY~~L~E~Dm~~Glwrrr-------~~~~eT~~a~s~ 2492 (3550)
T KOG0889|consen 2420 LIKYLGKTYNLWHTSIRLLEDHQSNKEMENTKGDESCLDSLAELYRSLNEEDMFYGLWRRR-------AKFPETMVALSY 2492 (3550)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHh-------hccHHHHHHHHH
Q ss_pred HhcCCHHHHHHHHHhc---CCCChhHHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCcHHHHHHHHHHHhcCCChhhHHH
Q 040394 292 VKCGNIRDARSVFDEL---CSIDLVSWTAMIVGYTQSGYPDKALKLFTDKKWADFFPNHVTIASVLSASAQLGNLNMGRM 368 (691)
Q Consensus 292 ~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 368 (691)
...|.+++|..++++. ...+...|..-=..+....-..-|.++-+.+....+.-....+..++.+..+..++..-..
T Consensus 2493 eQ~G~~e~AQ~lyekaq~Ka~~~~~~~~~~Ey~lWed~WI~Ca~eL~QWdvl~e~~k~~~~~~llle~aWrlsdw~~~~~ 2572 (3550)
T KOG0889|consen 2493 EQLGFWEEAQSLYEKAQVKAREGAIPYSESEYKLWEDHWIRCASELQQWDVLTEFGKHEGNYELLLECAWRLSDWNDQKD 2572 (3550)
T ss_pred HHhhhHHHHhhHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeehhccCCcchhHHH
Q ss_pred HHHHHHHhCCC----chhHHHHHHHHhHhcCC------------hHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHH
Q 040394 369 VHSLGIRLGLE----DYTVINALVDMYAKCHV------------IADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVT 432 (691)
Q Consensus 369 ~~~~~~~~~~~----~~~~~~~l~~~~~~~g~------------~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~ 432 (691)
.+....+..++ ....|..+...+....+ .+.+..-+.+.+.. -...
T Consensus 2573 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~e~~~l~i~~w~~lP~~------------------v~~~ 2634 (3550)
T KOG0889|consen 2573 ALEQKAKSLSDVPGFRKELYDAFLALQKKNSNGVGEFERLIGEAIQLAIREWRQLPER------------------VNHG 2634 (3550)
T ss_pred HHHHhhhccCCCCcHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCccc------------------cchh
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHH----hcCCHHHHHHHHHhcccCCHhHHHHHHHHHh
Q 040394 433 LVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYA----KCGDAQSARMVFDAMREKNTVTWSAMIGGYG 508 (691)
Q Consensus 433 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 508 (691)
...++++++..-...+|..++....+... .....-+..+-.... |.-...+-...+..+..--...|..+..+|.
T Consensus 2635 h~~lL~~~QqivEl~Ea~~I~s~l~~~n~-~n~~~~~~d~Ksil~~Wr~RlP~~~Dd~~~Wsdl~~WRq~~y~~I~~~~~ 2713 (3550)
T KOG0889|consen 2635 HVPLLQAFQQIVELQEAAQIYSDLNDGNV-QNLDNKAQDIKSILQTWRDRLPNVWDDMNQWSDLITWRQHAYSMINKAYL 2713 (3550)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccccc-cccchhHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred c-----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC---hhHHHHHHHHHHh
Q 040394 509 M-----QGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS---MKHYVCMVDLLAR 580 (691)
Q Consensus 509 ~-----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~---~~~~~~li~~~~~ 580 (691)
. ......-. .-.|+.--..+.+.+.....+.|-++.+...+.++-....++-. ...-..+-..+..
T Consensus 2714 ~~~~~~~~~~ns~~------~~~Gyhe~A~~in~fakvArkh~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~ 2787 (3550)
T KOG0889|consen 2714 PLVPYKQNASNSNN------LYRGYHELAWAINRFAKVARKHGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQN 2787 (3550)
T ss_pred ccchhhhccCCcch------HHHhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcC
Q ss_pred cCChHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 040394 581 AGRLEEALEFMENM-----PIEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYAS 646 (691)
Q Consensus 581 ~g~~~~A~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 646 (691)
.+....++++.+.- +..-....+..=+.-..+.|+.++|-+.|..+.++.-.-+..|...+..+..
T Consensus 2788 ~~e~~~gLevi~sTNl~yF~~~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~ 2858 (3550)
T KOG0889|consen 2788 KNELKTGLEVIESTNLMYFSDRQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDN 2858 (3550)
T ss_pred hHHHHHHHHHHhcccHHHHhhHHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHH
No 493
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=27.37 E-value=2.9e+02 Score=24.19 Aligned_cols=59 Identities=12% Similarity=0.024 Sum_probs=28.4
Q ss_pred HhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCH
Q 040394 238 REGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNI 297 (691)
Q Consensus 238 ~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 297 (691)
+..|++++..-. .++..+....+.-.|.++++.+.+.+..++..|.-.-++.+.+.|-+
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 334444443322 33333333344455666666666665555555444445555555543
No 494
>PRK09462 fur ferric uptake regulator; Provisional
Probab=27.30 E-value=3.9e+02 Score=22.66 Aligned_cols=60 Identities=12% Similarity=0.097 Sum_probs=34.7
Q ss_pred HHHhCCCCCChhhHHHHHHHHHcc-CChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCC
Q 040394 236 RMREGFVEGNQITLGSLVTACAKL-RALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGN 296 (691)
Q Consensus 236 ~m~~~~~~p~~~t~~~li~~~~~~-~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 296 (691)
.+.+.|++++..- ..++..+... +..-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 7 ~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 3455566654433 3344444433 4566778888888777766666655555555655554
No 495
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=27.20 E-value=3.2e+02 Score=23.90 Aligned_cols=47 Identities=13% Similarity=-0.036 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCchhHHHHHHHhhHCCCCCcHHHHHHHHHHHhcCCCh
Q 040394 317 AMIVGYTQSGYPDKALKLFTDKKWADFFPNHVTIASVLSASAQLGNL 363 (691)
Q Consensus 317 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 363 (691)
.++..+...++.-.|.++++.+.+.+...+..|.-..|..+...|-+
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 44444444555566777777777766666666655555555555543
No 496
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=27.11 E-value=4.5e+02 Score=28.02 Aligned_cols=106 Identities=20% Similarity=0.145 Sum_probs=65.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCchhHHHHHHHHHhCCC
Q 040394 571 YVCMVDLLARAGRLEEALEFMENMPIEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELH-PDKACYYVLVSNLYASDGR 649 (691)
Q Consensus 571 ~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~ 649 (691)
-..|-+-+....++.-|.++-++.++. ....|.+-..+|.+.+++..|..-|++++++. .+.|....-+.+. .. |-
T Consensus 559 secLRdqLie~ErYqlaV~mckKc~iD-~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~diin~-ie-Gg 635 (1141)
T KOG1811|consen 559 SECLRDQLIEAERYQLAVEMCKKCGID-TFGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIFDIINL-IE-GG 635 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCC-cccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHHHHHHh-hc-CC
Confidence 344555566667777777777777643 33478788888999999999999999988854 3333444444343 22 32
Q ss_pred cHHHHHHHHHHHhCCCccCCCeeEEEeCCe
Q 040394 650 WIRVNQVRELMKQRGLSKSPGCSLVDLDIA 679 (691)
Q Consensus 650 ~~~A~~~~~~~~~~g~~~~~~~~~~~~~~~ 679 (691)
...-......|.+.-.+|.|.+....+..|
T Consensus 636 pp~dVq~Vrem~dhlak~aptilddSLqaD 665 (1141)
T KOG1811|consen 636 PPRDVQDVREMLDHLAKPAPTILDDSLQAD 665 (1141)
T ss_pred CcchHHHHHHHHHHhccCCcccccccccch
Confidence 222334445555655667776665544444
No 497
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=26.72 E-value=2.8e+02 Score=20.93 Aligned_cols=41 Identities=10% Similarity=0.109 Sum_probs=26.9
Q ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 040394 267 WLHGYILKIGIEINSHLVTALLDMYVKCGNIRDARSVFDEL 307 (691)
Q Consensus 267 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 307 (691)
++|+.....|+..|..+|..+++.+.-+=-.+....+++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 66666677777777777777777655544555555566555
No 498
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=26.40 E-value=1.8e+02 Score=20.55 Aligned_cols=52 Identities=10% Similarity=-0.059 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhc
Q 040394 426 VSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKC 479 (691)
Q Consensus 426 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 479 (691)
+.|....++.++..+++..-.+.+...+....+.|. .+...|.--++.+++.
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~--I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS--IDLDTFLKQVRSLARE 55 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--S-HHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHH
Confidence 457777888999999998889999999999999884 5666666666666553
No 499
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=26.30 E-value=5.2e+02 Score=23.85 Aligned_cols=100 Identities=10% Similarity=-0.002 Sum_probs=0.0
Q ss_pred hhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCC
Q 040394 560 RDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENM-PIEP-----DVSLFGAFLHGCGLYSRFDLGEVMIKKMLE-LHPD 632 (691)
Q Consensus 560 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~ 632 (691)
+...+.+...-++.|+--|.-...+.+|.+.|.+- +++| +...-..-+......|+.+.|++.+.+..- +--.
T Consensus 18 ~~~~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~ 97 (228)
T KOG2659|consen 18 QLMKVSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDT 97 (228)
T ss_pred HHhccCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHcc
Q ss_pred CchhHHHHHHH----HHhCCCcHHHHHHHHH
Q 040394 633 KACYYVLVSNL----YASDGRWIRVNQVREL 659 (691)
Q Consensus 633 ~~~~~~~l~~~----~~~~g~~~~A~~~~~~ 659 (691)
|...+..|-.. ..++|..++|.++.+.
T Consensus 98 n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 98 NRELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred chhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
No 500
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=26.19 E-value=1.4e+02 Score=23.96 Aligned_cols=46 Identities=15% Similarity=0.078 Sum_probs=27.5
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHcccCCh
Q 040394 117 MIRWYFLNDLYKDIVEFYKCMRKRLKEHDNFVFSKVLKACCELRDI 162 (691)
Q Consensus 117 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 162 (691)
++..+...+..-.|.++++.+.+.+..++..|.-..|+.+...|-+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4455555556666777777777666555665555555655555543
Done!