Query 040394
Match_columns 691
No_of_seqs 618 out of 3850
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 12:42:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040394.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040394hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.5E-41 8.5E-46 368.4 37.4 501 89-646 62-596 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.8E-38 6.3E-43 345.8 38.6 446 194-664 67-580 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 4.2E-26 1.5E-30 233.6 43.7 375 219-649 7-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 2.4E-25 8.2E-30 228.1 39.8 352 288-663 6-368 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.4E-27 4.6E-32 248.2 23.0 209 130-360 9-223 (501)
6 4g26_A Pentatricopeptide repea 100.0 4.1E-27 1.4E-31 244.5 21.8 183 383-581 28-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 1.4E-22 4.7E-27 216.0 37.2 426 213-665 8-480 (514)
8 2gw1_A Mitochondrial precursor 99.9 5.6E-22 1.9E-26 211.3 37.4 425 113-559 8-476 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 1.6E-21 5.5E-26 204.0 35.3 329 313-665 27-412 (450)
10 3fp2_A TPR repeat-containing p 99.9 1.4E-21 4.8E-26 209.5 32.6 424 212-665 26-493 (537)
11 3fp2_A TPR repeat-containing p 99.9 3.8E-21 1.3E-25 206.1 34.2 445 112-639 26-501 (537)
12 2y4t_A DNAJ homolog subfamily 99.9 2.2E-20 7.6E-25 195.3 34.8 362 245-653 25-444 (450)
13 3ieg_A DNAJ homolog subfamily 99.8 1.8E-18 6.3E-23 174.6 33.2 309 313-645 4-351 (359)
14 1xi4_A Clathrin heavy chain; a 99.8 2.9E-15 9.9E-20 164.6 56.4 509 65-648 858-1415(1630)
15 3ieg_A DNAJ homolog subfamily 99.8 4.6E-18 1.6E-22 171.6 32.6 298 346-664 2-336 (359)
16 1xi4_A Clathrin heavy chain; a 99.8 1.1E-14 3.8E-19 160.0 55.3 313 117-487 1055-1376(1630)
17 3hym_B Cell division cycle pro 99.8 5.6E-18 1.9E-22 168.9 27.7 281 353-651 28-322 (330)
18 1b89_A Protein (clathrin heavy 99.8 5.8E-17 2E-21 159.9 26.5 286 92-406 15-307 (449)
19 3hym_B Cell division cycle pro 99.8 4.3E-16 1.5E-20 155.1 33.0 265 109-410 20-299 (330)
20 2ooe_A Cleavage stimulation fa 99.8 4.2E-15 1.4E-19 158.3 42.4 417 145-632 12-495 (530)
21 2xm6_A Protein corresponding t 99.8 5.3E-15 1.8E-19 155.9 41.3 364 259-660 56-464 (490)
22 2ooe_A Cleavage stimulation fa 99.8 6.9E-15 2.3E-19 156.6 42.2 415 210-664 12-493 (530)
23 1b89_A Protein (clathrin heavy 99.8 2.4E-16 8.2E-21 155.6 27.2 374 192-624 15-412 (449)
24 1fch_A Peroxisomal targeting s 99.8 1E-16 3.5E-21 162.4 24.7 296 90-407 35-356 (368)
25 1fch_A Peroxisomal targeting s 99.8 3.5E-17 1.2E-21 165.9 20.2 226 430-660 98-356 (368)
26 2xm6_A Protein corresponding t 99.7 2.4E-14 8.3E-19 150.8 41.8 362 266-665 27-434 (490)
27 3mkr_A Coatomer subunit epsilo 99.7 8.6E-16 3E-20 148.9 26.2 245 385-657 38-288 (291)
28 4g1t_A Interferon-induced prot 99.7 9.8E-16 3.4E-20 161.0 28.1 378 245-666 50-462 (472)
29 4eqf_A PEX5-related protein; a 99.7 8E-17 2.7E-21 163.0 18.7 259 381-659 65-352 (365)
30 4eqf_A PEX5-related protein; a 99.7 3.2E-16 1.1E-20 158.6 22.4 232 429-664 64-311 (365)
31 3mkr_A Coatomer subunit epsilo 99.7 2E-15 6.9E-20 146.3 23.6 247 388-664 6-265 (291)
32 3cv0_A Peroxisome targeting si 99.7 5.3E-16 1.8E-20 154.2 20.2 261 380-661 20-313 (327)
33 3spa_A Mtrpol, DNA-directed RN 99.7 1.4E-17 4.7E-22 177.2 8.3 148 179-326 126-286 (1134)
34 4g1t_A Interferon-induced prot 99.7 9.3E-15 3.2E-19 153.5 29.3 387 210-641 50-471 (472)
35 3cv0_A Peroxisome targeting si 99.7 1.7E-14 5.8E-19 143.3 27.1 275 110-409 20-314 (327)
36 3spa_A Mtrpol, DNA-directed RN 99.6 1.8E-16 6.1E-21 168.8 8.5 161 463-628 124-309 (1134)
37 2pl2_A Hypothetical conserved 99.6 2.9E-14 1E-18 131.8 19.0 195 463-661 2-212 (217)
38 3uq3_A Heat shock protein STI1 99.6 9.8E-14 3.3E-18 132.4 22.6 220 430-664 5-237 (258)
39 3e4b_A ALGK; tetratricopeptide 99.6 9.9E-13 3.4E-17 136.1 26.4 372 254-662 11-420 (452)
40 1xnf_A Lipoprotein NLPI; TPR, 99.5 2.4E-13 8.2E-18 131.2 19.3 247 390-657 14-269 (275)
41 3uq3_A Heat shock protein STI1 99.5 2.4E-13 8.3E-18 129.6 18.1 234 381-643 5-256 (258)
42 3e4b_A ALGK; tetratricopeptide 99.5 4.4E-12 1.5E-16 131.3 28.8 245 152-408 9-278 (452)
43 3u4t_A TPR repeat-containing p 99.5 1.6E-12 5.6E-17 125.1 23.7 256 351-648 7-269 (272)
44 2ho1_A Type 4 fimbrial biogene 99.5 1.4E-12 4.9E-17 123.9 22.1 194 468-663 39-238 (252)
45 2vq2_A PILW, putative fimbrial 99.5 2.3E-12 7.8E-17 120.0 22.9 195 466-662 8-210 (225)
46 2q7f_A YRRB protein; TPR, prot 99.5 5E-13 1.7E-17 126.2 18.3 211 428-643 21-236 (243)
47 2ho1_A Type 4 fimbrial biogene 99.5 3.8E-12 1.3E-16 120.9 24.2 205 430-639 37-248 (252)
48 4e6h_A MRNA 3'-END-processing 99.5 3.8E-10 1.3E-14 120.7 40.9 206 426-636 339-577 (679)
49 3u4t_A TPR repeat-containing p 99.5 2.5E-12 8.4E-17 123.8 21.9 227 432-664 5-251 (272)
50 1ouv_A Conserved hypothetical 99.5 1.6E-11 5.5E-16 118.2 27.6 224 429-665 5-253 (273)
51 2vq2_A PILW, putative fimbrial 99.5 8.6E-12 2.9E-16 116.0 24.9 207 429-640 7-222 (225)
52 2pl2_A Hypothetical conserved 99.5 1.6E-12 5.6E-17 120.0 19.4 193 110-306 4-210 (217)
53 2q7f_A YRRB protein; TPR, prot 99.5 1.3E-12 4.6E-17 123.2 18.3 199 463-664 20-223 (243)
54 2h6f_A Protein farnesyltransfe 99.5 1.9E-12 6.4E-17 129.7 19.4 246 380-646 96-365 (382)
55 2h6f_A Protein farnesyltransfe 99.5 2.1E-12 7.2E-17 129.3 19.4 227 430-663 97-348 (382)
56 1xnf_A Lipoprotein NLPI; TPR, 99.5 4.6E-13 1.6E-17 129.2 13.4 239 124-370 18-269 (275)
57 3sf4_A G-protein-signaling mod 99.4 1E-11 3.5E-16 127.3 22.2 293 353-655 15-368 (406)
58 4a1s_A PINS, partner of inscut 99.4 1.6E-12 5.6E-17 133.6 16.0 265 383-663 50-372 (411)
59 3vtx_A MAMA; tetratricopeptide 99.4 1.4E-11 4.7E-16 110.6 20.1 165 496-664 4-171 (184)
60 3ro2_A PINS homolog, G-protein 99.4 4.4E-12 1.5E-16 126.1 17.9 265 384-664 8-333 (338)
61 4abn_A Tetratricopeptide repea 99.4 2.8E-12 9.5E-17 133.7 16.4 207 445-658 83-316 (474)
62 4e6h_A MRNA 3'-END-processing 99.4 3.2E-09 1.1E-13 113.5 40.2 436 109-578 64-584 (679)
63 3sf4_A G-protein-signaling mod 99.4 5.2E-12 1.8E-16 129.5 17.0 258 350-616 50-363 (406)
64 1ouv_A Conserved hypothetical 99.4 1.7E-10 5.8E-15 110.9 26.5 224 110-379 5-254 (273)
65 4a1s_A PINS, partner of inscut 99.4 1.1E-11 3.7E-16 127.4 17.7 268 356-632 57-375 (411)
66 3ro2_A PINS homolog, G-protein 99.3 2.9E-11 1E-15 120.1 16.9 266 357-632 15-335 (338)
67 3nf1_A KLC 1, kinesin light ch 99.3 6.3E-12 2.2E-16 123.5 11.3 233 429-662 26-306 (311)
68 3ulq_A Response regulator aspa 99.3 1.9E-10 6.6E-15 116.7 21.0 237 386-662 108-367 (383)
69 2ond_A Cleavage stimulation fa 99.3 5.8E-10 2E-14 109.2 23.3 212 447-665 33-272 (308)
70 3ulq_A Response regulator aspa 99.3 6.5E-11 2.2E-15 120.2 16.6 187 474-660 111-332 (383)
71 4gyw_A UDP-N-acetylglucosamine 99.3 7.6E-11 2.6E-15 127.7 17.8 161 497-662 9-173 (723)
72 3as5_A MAMA; tetratricopeptide 99.3 1.8E-10 6.1E-15 103.2 17.0 130 533-664 43-174 (186)
73 3vtx_A MAMA; tetratricopeptide 99.2 5.8E-10 2E-14 99.9 19.2 162 347-525 5-169 (184)
74 2ond_A Cleavage stimulation fa 99.2 2.1E-09 7.2E-14 105.2 24.5 180 364-561 81-270 (308)
75 3q15_A PSP28, response regulat 99.2 1.6E-09 5.6E-14 109.6 23.9 196 432-627 143-363 (378)
76 4i17_A Hypothetical protein; T 99.2 7.9E-10 2.7E-14 102.9 19.6 205 427-644 4-224 (228)
77 4abn_A Tetratricopeptide repea 99.2 6.5E-10 2.2E-14 115.8 20.3 208 328-555 84-315 (474)
78 1hz4_A MALT regulatory protein 99.2 5.6E-09 1.9E-13 105.4 26.7 264 385-662 18-321 (373)
79 4i17_A Hypothetical protein; T 99.2 4.6E-10 1.6E-14 104.5 16.2 190 463-664 4-210 (228)
80 3nf1_A KLC 1, kinesin light ch 99.2 7.9E-11 2.7E-15 115.6 11.4 246 380-632 26-310 (311)
81 3q15_A PSP28, response regulat 99.2 2.6E-09 8.8E-14 108.1 22.0 226 436-662 107-364 (378)
82 3as5_A MAMA; tetratricopeptide 99.2 2E-09 6.7E-14 96.3 18.6 168 466-636 8-180 (186)
83 1hz4_A MALT regulatory protein 99.1 2.7E-08 9.1E-13 100.4 26.1 257 118-374 21-320 (373)
84 3edt_B KLC 2, kinesin light ch 99.1 9.5E-10 3.3E-14 106.0 13.1 221 442-663 13-281 (283)
85 2yhc_A BAMD, UPF0169 lipoprote 99.0 2.8E-08 9.7E-13 92.0 19.4 182 466-667 4-217 (225)
86 4gyw_A UDP-N-acetylglucosamine 99.0 1.3E-08 4.3E-13 110.4 18.5 156 82-238 11-172 (723)
87 2fo7_A Synthetic consensus TPR 99.0 1.3E-08 4.6E-13 85.2 15.0 126 536-663 5-132 (136)
88 1qqe_A Vesicular transport pro 99.0 5.7E-09 1.9E-13 101.1 14.0 185 476-660 47-266 (292)
89 3mv2_B Coatomer subunit epsilo 99.0 5.1E-08 1.7E-12 92.3 19.9 181 449-638 85-291 (310)
90 3qky_A Outer membrane assembly 99.0 1.3E-08 4.6E-13 96.8 16.0 184 463-664 12-225 (261)
91 1qqe_A Vesicular transport pro 99.0 1.5E-08 5.2E-13 98.1 16.6 205 437-641 44-281 (292)
92 3qky_A Outer membrane assembly 98.9 2.6E-08 8.8E-13 94.8 17.4 203 427-652 12-250 (261)
93 3mv2_B Coatomer subunit epsilo 98.9 7E-08 2.4E-12 91.3 19.9 239 389-664 21-283 (310)
94 3qou_A Protein YBBN; thioredox 98.9 4E-08 1.4E-12 94.8 17.7 175 483-662 103-283 (287)
95 4ga2_A E3 SUMO-protein ligase 98.9 1.4E-09 4.7E-14 93.4 6.1 139 506-649 6-149 (150)
96 2fo7_A Synthetic consensus TPR 98.9 5.6E-08 1.9E-12 81.3 15.4 131 499-632 3-135 (136)
97 3rjv_A Putative SEL1 repeat pr 98.9 1.5E-07 5.1E-12 86.0 18.8 172 485-665 5-199 (212)
98 2pzi_A Probable serine/threoni 98.9 7.1E-09 2.4E-13 113.0 11.5 190 441-638 402-611 (681)
99 3gyz_A Chaperone protein IPGC; 98.9 1.9E-08 6.4E-13 85.8 11.7 102 563-664 30-134 (151)
100 3edt_B KLC 2, kinesin light ch 98.9 1.9E-08 6.5E-13 96.8 13.3 194 147-340 44-280 (283)
101 2uy1_A Cleavage stimulation fa 98.8 1.7E-06 5.8E-11 89.8 28.1 124 382-524 287-411 (493)
102 4ga2_A E3 SUMO-protein ligase 98.8 1.3E-08 4.5E-13 87.2 9.9 121 540-663 5-129 (150)
103 2vsy_A XCC0866; transferase, g 98.8 5.1E-08 1.8E-12 104.4 15.9 159 479-641 2-169 (568)
104 3urz_A Uncharacterized protein 98.8 9.4E-08 3.2E-12 87.2 15.0 128 501-632 58-189 (208)
105 2r5s_A Uncharacterized protein 98.8 6.5E-08 2.2E-12 85.6 13.3 77 586-662 92-172 (176)
106 4gco_A Protein STI-1; structur 98.8 3.9E-08 1.3E-12 81.2 11.1 100 564-663 8-110 (126)
107 2r5s_A Uncharacterized protein 98.8 8.8E-08 3E-12 84.7 12.9 156 82-239 8-172 (176)
108 1hh8_A P67PHOX, NCF-2, neutrop 98.7 2E-07 6.8E-12 85.4 15.7 129 498-633 7-154 (213)
109 2pzi_A Probable serine/threoni 98.7 3.1E-07 1.1E-11 100.1 18.7 168 477-649 402-583 (681)
110 2ifu_A Gamma-SNAP; membrane fu 98.7 3.1E-07 1.1E-11 89.5 16.8 212 442-656 3-254 (307)
111 3dra_A Protein farnesyltransfe 98.7 2.5E-06 8.6E-11 81.6 22.5 216 442-662 45-286 (306)
112 2vgx_A Chaperone SYCD; alterna 98.7 5.1E-08 1.8E-12 83.2 9.6 101 563-663 15-118 (148)
113 3u3w_A Transcriptional activat 98.7 1.4E-06 4.7E-11 84.3 20.6 160 503-662 81-265 (293)
114 2qfc_A PLCR protein; TPR, HTH, 98.7 5.7E-07 2E-11 87.0 17.7 164 499-662 77-265 (293)
115 3qou_A Protein YBBN; thioredox 98.7 7.2E-07 2.5E-11 85.9 18.1 163 143-306 114-280 (287)
116 3urz_A Uncharacterized protein 98.7 7.5E-07 2.6E-11 81.1 17.1 170 432-608 6-198 (208)
117 2uy1_A Cleavage stimulation fa 98.7 1.1E-05 3.8E-10 83.7 27.8 369 196-628 11-412 (493)
118 2xcb_A PCRH, regulatory protei 98.6 2.6E-07 8.8E-12 78.3 11.5 100 564-663 13-115 (142)
119 3dra_A Protein farnesyltransfe 98.6 1.8E-05 6.2E-10 75.7 25.4 229 392-642 44-301 (306)
120 2vsy_A XCC0866; transferase, g 98.6 5E-07 1.7E-11 96.7 16.3 146 443-594 2-154 (568)
121 4gco_A Protein STI-1; structur 98.6 6.5E-07 2.2E-11 73.8 12.7 112 529-643 9-124 (126)
122 3rjv_A Putative SEL1 repeat pr 98.6 4.7E-06 1.6E-10 76.0 19.6 174 448-632 4-200 (212)
123 2kck_A TPR repeat; tetratricop 98.6 4E-07 1.4E-11 73.1 11.1 99 568-666 6-109 (112)
124 1a17_A Serine/threonine protei 98.6 8.6E-07 3E-11 77.2 13.8 125 535-662 16-145 (166)
125 2yhc_A BAMD, UPF0169 lipoprote 98.6 1.2E-06 4.3E-11 80.8 15.3 55 253-307 154-210 (225)
126 2c2l_A CHIP, carboxy terminus 98.6 1.3E-07 4.4E-12 90.8 8.6 189 468-663 6-199 (281)
127 1na0_A Designed protein CTPR3; 98.5 1E-06 3.6E-11 72.2 13.0 114 533-648 10-125 (125)
128 2e2e_A Formate-dependent nitri 98.5 3.3E-07 1.1E-11 81.1 10.4 124 508-635 21-150 (177)
129 2vyi_A SGTA protein; chaperone 98.5 1.1E-06 3.7E-11 72.8 12.8 116 533-651 13-131 (131)
130 1hh8_A P67PHOX, NCF-2, neutrop 98.5 1.1E-06 3.9E-11 80.2 14.0 123 83-206 9-147 (213)
131 3upv_A Heat shock protein STI1 98.5 8.3E-07 2.8E-11 73.2 11.6 95 569-663 5-101 (126)
132 2ifu_A Gamma-SNAP; membrane fu 98.5 4E-07 1.4E-11 88.7 11.2 162 499-661 38-222 (307)
133 2lni_A Stress-induced-phosphop 98.5 9.3E-07 3.2E-11 73.6 12.0 114 533-649 17-133 (133)
134 1hxi_A PEX5, peroxisome target 98.5 4.9E-07 1.7E-11 73.9 9.3 95 570-664 19-115 (121)
135 1p5q_A FKBP52, FK506-binding p 98.5 1.1E-06 3.8E-11 86.6 13.4 95 568-662 196-293 (336)
136 4f3v_A ESX-1 secretion system 98.5 1.9E-06 6.5E-11 80.4 13.6 192 442-640 18-247 (282)
137 3q49_B STIP1 homology and U bo 98.4 1.7E-06 5.9E-11 72.4 12.0 96 568-663 9-106 (137)
138 3u3w_A Transcriptional activat 98.4 3.9E-05 1.3E-09 74.0 23.1 193 426-628 42-265 (293)
139 3sz7_A HSC70 cochaperone (SGT) 98.4 1.2E-06 4E-11 76.3 10.9 109 531-642 10-121 (164)
140 1elw_A TPR1-domain of HOP; HOP 98.4 2.4E-06 8.3E-11 69.1 11.6 92 571-662 7-100 (118)
141 2lni_A Stress-induced-phosphop 98.4 2.3E-06 7.9E-11 71.1 11.7 97 568-664 16-114 (133)
142 2qfc_A PLCR protein; TPR, HTH, 98.4 8.4E-06 2.9E-10 78.7 17.2 163 466-628 75-265 (293)
143 3gw4_A Uncharacterized protein 98.4 4.2E-06 1.4E-10 75.7 14.0 94 569-662 67-175 (203)
144 4f3v_A ESX-1 secretion system 98.4 6.2E-06 2.1E-10 77.0 15.0 183 478-665 18-239 (282)
145 1na0_A Designed protein CTPR3; 98.4 2.9E-06 9.9E-11 69.4 11.6 97 568-664 9-107 (125)
146 4gcn_A Protein STI-1; structur 98.4 1.4E-06 4.8E-11 71.9 9.2 95 569-663 9-112 (127)
147 2dba_A Smooth muscle cell asso 98.3 4.3E-06 1.5E-10 71.0 12.1 109 532-643 28-142 (148)
148 2vgx_A Chaperone SYCD; alterna 98.3 1.1E-06 3.7E-11 74.9 8.1 105 533-640 22-129 (148)
149 2e2e_A Formate-dependent nitri 98.3 3.2E-06 1.1E-10 74.6 11.4 122 542-666 20-147 (177)
150 1elw_A TPR1-domain of HOP; HOP 98.3 8.6E-06 2.9E-10 65.7 13.1 109 533-644 5-116 (118)
151 2fbn_A 70 kDa peptidylprolyl i 98.3 3.8E-06 1.3E-10 75.7 11.7 168 476-664 14-187 (198)
152 3gyz_A Chaperone protein IPGC; 98.3 2.1E-06 7.2E-11 73.0 9.2 92 113-205 38-129 (151)
153 2dba_A Smooth muscle cell asso 98.3 1E-05 3.4E-10 68.7 13.7 98 567-664 27-129 (148)
154 3q7a_A Farnesyltransferase alp 98.3 0.0004 1.4E-08 67.1 26.1 222 116-340 59-330 (349)
155 2vyi_A SGTA protein; chaperone 98.3 5.1E-06 1.7E-10 68.6 11.2 97 568-664 12-110 (131)
156 2xev_A YBGF; tetratricopeptide 98.3 3E-06 1E-10 70.1 9.5 94 540-636 10-112 (129)
157 3gw4_A Uncharacterized protein 98.3 6.3E-06 2.1E-10 74.5 12.4 132 498-629 27-176 (203)
158 3q7a_A Farnesyltransferase alp 98.3 0.00041 1.4E-08 67.1 25.1 125 515-643 185-346 (349)
159 2hr2_A Hypothetical protein; a 98.3 3.9E-06 1.3E-10 70.5 9.3 91 572-662 15-130 (159)
160 1a17_A Serine/threonine protei 98.2 1.5E-05 5.1E-10 69.1 13.5 124 113-237 15-143 (166)
161 3upv_A Heat shock protein STI1 98.2 1E-05 3.5E-10 66.5 11.7 109 534-645 6-123 (126)
162 2c2l_A CHIP, carboxy terminus 98.2 4.8E-06 1.6E-10 79.7 10.9 95 349-458 6-100 (281)
163 2xcb_A PCRH, regulatory protei 98.2 7.1E-06 2.4E-10 69.2 10.5 106 534-642 20-128 (142)
164 3dss_A Geranylgeranyl transfer 98.2 0.00035 1.2E-08 67.2 23.3 216 442-663 41-304 (331)
165 3sz7_A HSC70 cochaperone (SGT) 98.2 1.4E-05 4.8E-10 69.3 12.2 95 568-662 11-107 (164)
166 3k9i_A BH0479 protein; putativ 98.2 1.4E-06 4.8E-11 70.7 5.1 91 545-635 3-96 (117)
167 1elr_A TPR2A-domain of HOP; HO 98.2 6.6E-06 2.3E-10 67.9 9.4 96 569-664 5-109 (131)
168 4b4t_Q 26S proteasome regulato 98.2 4.8E-05 1.6E-09 78.1 17.2 120 542-661 105-243 (434)
169 3rkv_A Putative peptidylprolyl 98.2 7.3E-06 2.5E-10 71.0 9.3 101 534-634 13-131 (162)
170 2fbn_A 70 kDa peptidylprolyl i 98.1 4.3E-06 1.5E-10 75.4 7.3 151 86-237 10-183 (198)
171 3q49_B STIP1 homology and U bo 98.1 1.9E-05 6.4E-10 65.9 10.7 111 530-643 7-125 (137)
172 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 1.8E-05 6.3E-10 81.5 12.6 144 497-662 268-414 (457)
173 1wao_1 Serine/threonine protei 98.1 1E-05 3.4E-10 83.9 10.1 115 541-658 15-134 (477)
174 3ro3_A PINS homolog, G-protein 98.1 1.1E-05 3.7E-10 69.6 8.9 93 570-662 51-157 (164)
175 2if4_A ATFKBP42; FKBP-like, al 98.1 6.6E-06 2.3E-10 81.1 8.1 150 497-666 179-331 (338)
176 2xev_A YBGF; tetratricopeptide 98.1 5.5E-05 1.9E-09 62.2 12.6 93 572-664 6-106 (129)
177 1p5q_A FKBP52, FK506-binding p 98.0 4.1E-05 1.4E-09 75.3 13.1 145 94-238 127-292 (336)
178 1elr_A TPR2A-domain of HOP; HO 98.0 5E-05 1.7E-09 62.4 11.8 109 535-646 7-124 (131)
179 3dss_A Geranylgeranyl transfer 98.0 0.0016 5.6E-08 62.6 23.4 230 393-644 41-319 (331)
180 4gcn_A Protein STI-1; structur 98.0 0.0001 3.4E-09 60.6 13.1 101 431-535 9-119 (127)
181 4b4t_Q 26S proteasome regulato 98.0 0.00031 1E-08 72.0 19.5 192 437-628 11-244 (434)
182 3k9i_A BH0479 protein; putativ 98.0 9.5E-06 3.3E-10 65.7 6.2 84 580-663 2-90 (117)
183 3n71_A Histone lysine methyltr 98.0 2.6E-05 8.8E-10 80.2 10.7 123 542-664 319-465 (490)
184 2kck_A TPR repeat; tetratricop 98.0 6.5E-05 2.2E-09 59.7 11.2 92 148-239 8-105 (112)
185 1ihg_A Cyclophilin 40; ppiase 98.0 3.5E-05 1.2E-09 76.7 11.4 138 497-656 223-363 (370)
186 3ma5_A Tetratricopeptide repea 98.0 3.5E-05 1.2E-09 60.1 9.0 65 599-663 6-70 (100)
187 2l6j_A TPR repeat-containing p 98.0 3.7E-06 1.3E-10 67.3 3.3 93 567-659 3-103 (111)
188 2kat_A Uncharacterized protein 97.9 3.7E-05 1.3E-09 61.9 7.9 63 600-662 19-81 (115)
189 3rkv_A Putative peptidylprolyl 97.9 3.1E-05 1.1E-09 66.9 7.9 94 571-664 14-127 (162)
190 1hxi_A PEX5, peroxisome target 97.9 4.7E-05 1.6E-09 61.9 8.5 92 114-206 20-111 (121)
191 3bee_A Putative YFRE protein; 97.8 0.0001 3.4E-09 56.2 9.4 73 597-670 3-78 (93)
192 3ro3_A PINS homolog, G-protein 97.8 4.6E-05 1.6E-09 65.5 8.7 61 570-630 91-159 (164)
193 1na3_A Designed protein CTPR2; 97.8 8.2E-05 2.8E-09 56.6 8.8 81 568-648 9-91 (91)
194 1wao_1 Serine/threonine protei 97.8 8.7E-05 3E-09 76.8 11.6 114 475-592 15-134 (477)
195 1dce_A Protein (RAB geranylger 97.8 0.0011 3.7E-08 70.0 19.4 136 513-652 89-244 (567)
196 2if4_A ATFKBP42; FKBP-like, al 97.7 0.00012 4E-09 72.1 10.5 152 465-634 178-333 (338)
197 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 8.6E-05 2.9E-09 76.5 9.8 98 568-665 268-382 (457)
198 2hr2_A Hypothetical protein; a 97.7 4.6E-05 1.6E-09 64.0 6.1 72 570-641 59-143 (159)
199 1ihg_A Cyclophilin 40; ppiase 97.7 0.00012 4.2E-09 72.8 9.2 65 600-664 273-337 (370)
200 2l6j_A TPR repeat-containing p 97.6 0.00019 6.5E-09 57.0 8.4 67 599-665 3-69 (111)
201 1klx_A Cysteine rich protein B 97.6 0.00027 9.2E-09 58.9 9.4 112 546-665 9-128 (138)
202 1zu2_A Mitochondrial import re 97.6 5.2E-05 1.8E-09 63.5 4.4 86 580-665 14-122 (158)
203 3lvg_A Clathrin heavy chain 1; 97.5 1.2E-05 4.1E-10 78.6 -0.4 438 55-554 34-534 (624)
204 1na3_A Designed protein CTPR2; 97.5 0.00043 1.5E-08 52.4 8.0 65 600-664 9-73 (91)
205 1zu2_A Mitochondrial import re 97.3 9.9E-05 3.4E-09 61.8 3.3 92 546-640 16-131 (158)
206 3n71_A Histone lysine methyltr 97.3 0.00048 1.7E-08 70.7 8.0 86 577-662 318-421 (490)
207 3qww_A SET and MYND domain-con 97.2 0.00045 1.6E-08 69.7 7.1 95 544-638 310-425 (433)
208 2kat_A Uncharacterized protein 97.1 0.0015 5.2E-08 52.1 8.4 79 551-632 4-85 (115)
209 1dce_A Protein (RAB geranylger 97.1 0.0083 2.8E-07 63.2 16.1 149 511-664 43-222 (567)
210 1wy6_A Hypothetical protein ST 97.1 0.033 1.1E-06 44.0 14.8 140 508-666 18-157 (172)
211 3qww_A SET and MYND domain-con 97.1 0.0022 7.5E-08 64.7 10.8 81 582-662 312-410 (433)
212 2kc7_A BFR218_protein; tetratr 97.1 0.0012 4.1E-08 50.9 7.1 79 574-660 6-87 (99)
213 2kc7_A BFR218_protein; tetratr 97.1 0.00076 2.6E-08 52.1 5.8 57 607-663 7-64 (99)
214 1klx_A Cysteine rich protein B 97.1 0.0087 3E-07 49.5 12.5 112 511-631 9-128 (138)
215 3qwp_A SET and MYND domain-con 97.1 0.001 3.5E-08 67.2 7.9 103 539-641 294-417 (429)
216 3qwp_A SET and MYND domain-con 97.1 0.0043 1.5E-07 62.6 12.4 87 576-662 295-399 (429)
217 3u64_A Protein TP_0956; tetrat 96.9 0.003 1E-07 58.2 8.8 88 584-671 179-277 (301)
218 3ly7_A Transcriptional activat 96.8 0.022 7.5E-07 55.0 14.5 68 567-634 276-344 (372)
219 3ly7_A Transcriptional activat 96.6 0.016 5.4E-07 56.0 11.9 69 596-665 273-341 (372)
220 3ma5_A Tetratricopeptide repea 96.6 0.016 5.6E-07 44.6 9.7 63 429-493 6-68 (100)
221 1pc2_A Mitochondria fission pr 96.5 0.0065 2.2E-07 50.2 7.3 93 546-640 12-111 (152)
222 3mkq_A Coatomer beta'-subunit; 96.5 0.12 4.1E-06 57.5 20.3 153 120-306 608-761 (814)
223 2v5f_A Prolyl 4-hydroxylase su 96.5 0.017 5.7E-07 44.9 9.4 74 568-641 5-87 (104)
224 3lvg_A Clathrin heavy chain 1; 96.5 0.00035 1.2E-08 68.6 -0.6 119 178-307 52-170 (624)
225 4ady_A RPN2, 26S proteasome re 96.2 2 7E-05 47.0 28.9 260 255-535 383-664 (963)
226 1pc2_A Mitochondria fission pr 95.9 0.033 1.1E-06 46.0 8.4 67 597-663 29-100 (152)
227 1qsa_A Protein (soluble lytic 95.9 2.1 7.1E-05 45.0 28.1 114 511-628 228-347 (618)
228 2v5f_A Prolyl 4-hydroxylase su 95.9 0.037 1.3E-06 42.9 8.3 65 599-663 4-75 (104)
229 4h7y_A Dual specificity protei 95.8 0.027 9.3E-07 45.7 7.3 54 613-666 73-126 (161)
230 3bee_A Putative YFRE protein; 95.8 0.073 2.5E-06 40.1 9.5 69 566-634 4-77 (93)
231 3mkq_A Coatomer beta'-subunit; 95.5 0.098 3.4E-06 58.2 13.4 153 439-625 608-761 (814)
232 4ady_A RPN2, 26S proteasome re 95.4 4.1 0.00014 44.7 34.2 269 320-607 382-668 (963)
233 3mkq_B Coatomer subunit alpha; 94.7 1.7 5.7E-05 36.8 16.0 129 188-338 13-141 (177)
234 3mkq_B Coatomer subunit alpha; 94.7 0.77 2.6E-05 38.9 13.2 129 474-626 13-141 (177)
235 1nzn_A CGI-135 protein, fissio 94.4 0.11 3.7E-06 41.2 6.7 94 545-640 14-114 (126)
236 1nzn_A CGI-135 protein, fissio 94.1 0.4 1.4E-05 37.9 9.4 67 597-663 32-103 (126)
237 2wpv_A GET4, UPF0363 protein Y 92.9 6.3 0.00022 37.1 18.6 114 282-406 34-159 (312)
238 1y8m_A FIS1; mitochondria, unk 92.8 1.1 3.6E-05 36.2 10.0 76 565-640 36-117 (144)
239 3ffl_A Anaphase-promoting comp 92.4 0.97 3.3E-05 37.6 9.6 60 602-661 65-149 (167)
240 4gns_B Protein CSD3, chitin bi 92.4 0.87 3E-05 48.9 11.8 52 610-661 347-398 (754)
241 3u64_A Protein TP_0956; tetrat 92.4 0.76 2.6E-05 42.5 9.9 86 162-247 179-278 (301)
242 3lpz_A GET4 (YOR164C homolog); 91.4 9.8 0.00033 36.1 21.4 113 282-405 36-160 (336)
243 3lpz_A GET4 (YOR164C homolog); 90.9 11 0.00038 35.7 22.2 167 82-274 37-215 (336)
244 1wy6_A Hypothetical protein ST 90.9 5.2 0.00018 31.9 14.4 140 222-379 18-157 (172)
245 3o48_A Mitochondria fission 1 90.6 1 3.4E-05 35.9 7.5 76 564-639 36-117 (134)
246 2wpv_A GET4, UPF0363 protein Y 90.2 12 0.00042 35.1 20.1 167 82-274 35-216 (312)
247 4h7y_A Dual specificity protei 90.0 5.2 0.00018 32.6 11.2 97 208-306 10-119 (161)
248 2ff4_A Probable regulatory pro 89.4 0.83 2.8E-05 45.2 7.9 54 573-626 176-231 (388)
249 1y8m_A FIS1; mitochondria, unk 89.4 4.7 0.00016 32.5 10.5 78 587-664 25-107 (144)
250 2p58_C Putative type III secre 89.2 5.4 0.00019 29.6 9.8 86 261-351 22-107 (116)
251 2uwj_G Type III export protein 88.3 5.1 0.00018 29.7 9.0 86 261-351 21-106 (115)
252 3ffl_A Anaphase-promoting comp 88.3 1.4 4.7E-05 36.7 7.0 40 604-644 126-165 (167)
253 4b4t_P 26S proteasome regulato 88.0 11 0.00039 37.7 15.2 25 465-489 55-79 (445)
254 3txn_A 26S proteasome regulato 87.8 22 0.00074 34.8 17.4 128 431-558 20-165 (394)
255 1qsa_A Protein (soluble lytic 87.1 32 0.0011 36.1 39.8 390 82-531 74-484 (618)
256 3o48_A Mitochondria fission 1 87.1 2.6 8.8E-05 33.5 7.6 69 595-663 35-107 (134)
257 4b4t_P 26S proteasome regulato 85.0 33 0.0011 34.3 22.7 51 125-175 30-85 (445)
258 1v54_E Cytochrome C oxidase po 84.0 4.6 0.00016 30.1 7.1 63 512-576 25-87 (109)
259 3esl_A Checkpoint serine/threo 83.8 11 0.00037 32.6 10.5 50 616-665 95-146 (202)
260 1v54_E Cytochrome C oxidase po 83.6 3.8 0.00013 30.6 6.5 59 129-187 28-86 (109)
261 4gns_B Protein CSD3, chitin bi 83.3 8.5 0.00029 41.3 11.9 54 355-408 345-398 (754)
262 2p58_C Putative type III secre 83.1 12 0.00039 27.9 8.7 79 160-241 21-99 (116)
263 2uwj_G Type III export protein 82.7 11 0.00037 28.0 8.4 79 160-241 20-98 (115)
264 4fhn_B Nucleoporin NUP120; pro 82.3 77 0.0026 36.4 21.1 61 348-408 900-965 (1139)
265 1zbp_A Hypothetical protein VP 81.6 10 0.00035 34.5 10.0 121 505-635 5-135 (273)
266 1zbp_A Hypothetical protein VP 81.3 3.3 0.00011 37.6 6.7 59 576-634 5-65 (273)
267 2ff4_A Probable regulatory pro 81.3 8.1 0.00028 38.0 10.4 70 500-570 174-247 (388)
268 4fhn_B Nucleoporin NUP120; pro 80.3 85 0.0029 36.0 19.8 28 179-206 841-868 (1139)
269 4a1g_A Mitotic checkpoint seri 78.7 18 0.00061 29.6 9.7 78 587-667 54-134 (152)
270 2y69_E Cytochrome C oxidase su 77.2 15 0.00052 29.1 8.2 61 514-576 70-130 (152)
271 2wvi_A Mitotic checkpoint seri 75.2 22 0.00076 29.5 9.5 49 619-667 79-129 (164)
272 1wdy_A 2-5A-dependent ribonucl 75.1 47 0.0016 30.2 13.6 49 257-305 190-240 (285)
273 2y69_E Cytochrome C oxidase su 74.0 9.8 0.00034 30.1 6.5 60 129-188 71-130 (152)
274 4b4t_R RPN7, 26S proteasome re 70.0 21 0.00073 35.6 10.0 59 570-628 133-196 (429)
275 1wdy_A 2-5A-dependent ribonucl 69.4 20 0.00069 32.9 9.4 57 289-346 153-213 (285)
276 4b4t_R RPN7, 26S proteasome re 66.8 59 0.002 32.3 12.5 56 182-237 133-194 (429)
277 4a1g_A Mitotic checkpoint seri 66.4 8.9 0.0003 31.4 5.1 41 65-105 84-126 (152)
278 3ltj_A Alpharep-4; protein eng 62.9 72 0.0025 27.2 18.3 17 310-326 150-166 (201)
279 3ltm_A Alpha-REP4; protein eng 60.7 82 0.0028 27.2 18.4 48 179-226 32-79 (211)
280 3esl_A Checkpoint serine/threo 59.9 85 0.0029 27.1 11.0 59 443-501 92-150 (202)
281 1k1a_A B-cell lymphoma 3-encod 57.6 70 0.0024 28.2 10.4 24 121-144 16-39 (241)
282 3eu9_A Huntingtin-interacting 56.4 23 0.0008 31.3 6.9 13 92-104 18-30 (240)
283 2nsz_A Programmed cell death p 55.8 74 0.0025 25.1 9.0 67 284-350 10-81 (129)
284 3kea_A K1L; tropism, ANK repea 55.8 73 0.0025 29.3 10.4 16 291-306 202-217 (285)
285 3ltj_A Alpharep-4; protein eng 55.4 97 0.0033 26.4 20.7 81 279-363 88-168 (201)
286 1k1a_A B-cell lymphoma 3-encod 54.9 60 0.0021 28.6 9.5 45 60-104 20-67 (241)
287 3ltm_A Alpha-REP4; protein eng 54.6 1E+02 0.0036 26.4 20.4 80 144-226 31-110 (211)
288 4b4t_S RPN3, 26S proteasome re 53.3 27 0.00092 35.4 7.0 67 568-634 231-304 (523)
289 2ion_A PDCD4, programmed cell 51.1 60 0.002 26.6 7.7 67 284-350 12-83 (152)
290 4aez_C MAD3, mitotic spindle c 50.5 71 0.0024 28.0 8.4 29 601-629 151-179 (223)
291 3eu9_A Huntingtin-interacting 48.5 82 0.0028 27.5 9.3 44 60-107 20-66 (240)
292 3hra_A Ankyrin repeat family p 48.4 1E+02 0.0035 26.0 9.7 75 90-169 12-92 (201)
293 3bqo_A Telomeric repeat-bindin 48.3 1.3E+02 0.0044 25.7 9.6 38 607-644 124-161 (211)
294 2wvi_A Mitotic checkpoint seri 47.5 45 0.0015 27.7 6.3 42 64-105 78-121 (164)
295 2zu6_B Programmed cell death p 47.0 1.6E+02 0.0053 27.6 10.8 66 469-534 169-239 (307)
296 3jxi_A Vanilloid receptor-rela 46.7 35 0.0012 30.8 6.5 88 120-208 11-118 (260)
297 4gq2_M Nucleoporin NUP120; bet 46.3 1.8E+02 0.006 32.6 13.0 51 538-594 816-866 (950)
298 2d2s_A Exocyst complex compone 46.2 84 0.0029 28.0 8.5 21 218-238 25-45 (235)
299 2nsz_A Programmed cell death p 45.8 91 0.0031 24.6 7.8 65 469-533 10-79 (129)
300 4aez_C MAD3, mitotic spindle c 45.4 46 0.0016 29.3 6.4 59 60-118 128-188 (223)
301 2ion_A PDCD4, programmed cell 38.5 77 0.0026 25.9 6.5 65 469-533 12-81 (152)
302 1n11_A Ankyrin; clathrin, BAND 37.8 1.5E+02 0.005 29.3 10.0 15 152-166 50-64 (437)
303 2d2s_A Exocyst complex compone 37.2 1.2E+02 0.0042 27.0 8.1 23 117-139 24-46 (235)
304 3ygs_P Procaspase 9; apoptosis 37.0 80 0.0027 23.4 5.8 37 194-230 51-87 (97)
305 1oyz_A Hypothetical protein YI 36.8 2.4E+02 0.0081 25.5 21.0 20 207-226 138-157 (280)
306 4b4t_S RPN3, 26S proteasome re 36.4 89 0.003 31.7 7.7 62 532-594 231-296 (523)
307 1ya0_A SMG-7 transcript varian 35.9 1.1E+02 0.0037 31.0 8.4 47 612-658 164-210 (497)
308 1wgl_A TOLL-interacting protei 35.9 27 0.00091 23.1 2.6 48 621-669 11-58 (59)
309 3eiq_C Programmed cell death p 35.7 3E+02 0.01 26.3 14.5 68 468-535 219-291 (358)
310 3mv2_A Coatomer subunit alpha; 35.5 2.8E+02 0.0096 25.9 11.4 55 595-663 200-256 (325)
311 1ug3_A EIF4GI, eukaryotic prot 35.2 3E+02 0.01 26.1 11.3 26 184-209 15-40 (339)
312 2p1h_A APAF-1, apoptotic prote 32.8 1.3E+02 0.0045 21.9 6.5 61 165-228 24-84 (94)
313 2zu6_B Programmed cell death p 32.7 3.1E+02 0.011 25.5 11.1 28 83-110 6-33 (307)
314 3eiq_C Programmed cell death p 31.9 3.5E+02 0.012 25.9 19.8 72 284-355 220-296 (358)
315 2fe3_A Peroxide operon regulat 30.6 1.9E+02 0.0066 23.2 7.7 48 316-363 25-72 (145)
316 3bu8_A Telomeric repeat-bindin 30.5 1.4E+02 0.0049 25.8 6.8 27 575-601 121-148 (235)
317 2fu4_A Ferric uptake regulatio 29.3 1.5E+02 0.005 20.8 7.4 61 235-296 6-67 (83)
318 1bpo_A Protein (clathrin); cla 29.2 4.4E+02 0.015 26.2 14.0 104 373-493 352-456 (494)
319 3hra_A Ankyrin repeat family p 29.0 2.2E+02 0.0076 23.8 8.6 146 121-280 12-172 (201)
320 3kea_A K1L; tropism, ANK repea 28.9 1.9E+02 0.0065 26.3 8.5 181 474-668 36-222 (285)
321 3ljn_A Hypothetical protein; a 27.9 1.7E+02 0.0059 27.7 8.4 17 290-306 250-266 (364)
322 2fu4_A Ferric uptake regulatio 27.8 1.6E+02 0.0054 20.6 6.3 60 135-195 6-67 (83)
323 2rfa_A Transient receptor pote 26.9 1.8E+02 0.0061 25.2 7.8 27 252-278 157-183 (232)
324 1n11_A Ankyrin; clathrin, BAND 26.3 3E+02 0.01 26.9 10.0 178 473-668 183-371 (437)
325 4g8k_A 2-5A-dependent ribonucl 26.0 2.4E+02 0.0084 26.3 9.0 16 291-306 175-190 (337)
326 2fe3_A Peroxide operon regulat 25.9 2E+02 0.0067 23.1 7.0 61 236-297 12-72 (145)
327 2etb_A Transient receptor pote 25.8 1.4E+02 0.0046 26.6 6.8 90 118-208 6-115 (256)
328 1ug3_A EIF4GI, eukaryotic prot 25.7 4.3E+02 0.015 24.9 11.5 23 284-306 144-166 (339)
329 4g8k_A 2-5A-dependent ribonucl 25.1 4.2E+02 0.014 24.6 12.5 41 266-306 219-261 (337)
330 3b7b_A Euchromatic histone-lys 24.7 3.4E+02 0.011 23.4 9.2 20 86-105 47-66 (237)
331 3aji_A 26S proteasome non-ATPa 24.7 3.1E+02 0.01 23.6 8.9 12 92-103 15-26 (231)
332 2xig_A Ferric uptake regulatio 23.8 2.9E+02 0.0098 22.3 7.7 49 315-363 29-77 (150)
333 3ljn_A Hypothetical protein; a 23.5 1.5E+02 0.0053 28.1 7.1 218 427-659 15-266 (364)
334 3ygs_P Procaspase 9; apoptosis 22.9 1.1E+02 0.0039 22.5 4.5 38 480-517 51-88 (97)
335 2xig_A Ferric uptake regulatio 22.0 2.6E+02 0.0088 22.6 7.0 62 235-297 16-77 (150)
336 2keb_A DNA polymerase subunit 21.5 1.9E+02 0.0065 21.4 5.1 27 516-542 28-54 (101)
337 2w57_A Ferric uptake regulatio 21.0 3.3E+02 0.011 21.9 7.5 62 235-297 6-68 (150)
338 4ets_A Ferric uptake regulatio 20.8 2.6E+02 0.0087 23.0 6.8 46 317-362 37-84 (162)
339 3txn_A 26S proteasome regulato 20.8 5.8E+02 0.02 24.7 27.6 89 565-665 253-345 (394)
340 3aji_A 26S proteasome non-ATPa 20.7 4E+02 0.014 22.8 9.2 19 437-455 10-28 (231)
341 4b4t_O 26S proteasome regulato 20.6 2.7E+02 0.0092 27.1 8.0 23 605-627 132-154 (393)
342 2b7e_A PRE-mRNA processing pro 20.5 1E+02 0.0034 20.4 3.2 33 127-159 2-35 (59)
343 2r9g_A AAA ATPase, central reg 20.5 4.1E+02 0.014 22.8 8.7 65 113-178 13-85 (204)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-41 Score=368.42 Aligned_cols=501 Identities=9% Similarity=-0.071 Sum_probs=343.8
Q ss_pred HHhcCCChHHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHcccCChhHHHHH
Q 040394 89 MYGSFGHVKYARSVFDSMPNPDFYSFQVMIRWYFLNDLYKDIVEFYKCMRKRLKEHDNFVFSKVLKACCELRDIDEGMKV 168 (691)
Q Consensus 89 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 168 (691)
.+.+.|....+...|..++.++...|+.++..+.+.|++++|+.+|++|... .|+..++..++.+|.+.|++++|..+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 3556778888888999888889999999999999999999999999999864 67888999999999999999999999
Q ss_pred HHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhccCCC-------------------ChhhHHHHHHHHHhCCChhH
Q 040394 169 HCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDETLDK-------------------NVVSWTSMIAGYVQNDCAQE 229 (691)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~ 229 (691)
|+.+... +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++
T Consensus 140 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 140 LTKEDLY-NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHHTCGG-GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcc-ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 9987643 448899999999999999999999999965433 36788888888888888888
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhH--HHH-HHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHh
Q 040394 230 GLVLFNRMREGFVEGNQITLGSLVTACAKLRALHQG--KWL-HGYILKIGIEINSHLVTALLDMYVKCGNIRDARSVFDE 306 (691)
Q Consensus 230 A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a--~~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 306 (691)
|+++|++|.+.+.. +...+..+...+...+..+.+ ..+ +..+...+..+...+|+.++..|.+.|++++|.++|++
T Consensus 219 A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 297 (597)
T 2xpi_A 219 AKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSS 297 (597)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 88888888775421 333444444433332222211 111 34444444444555666667777777777777777777
Q ss_pred cCC--CChhHHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCcHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCchhHH
Q 040394 307 LCS--IDLVSWTAMIVGYTQSGYPDKALKLFTDKKWADFFPNHVTIASVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVI 384 (691)
Q Consensus 307 ~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 384 (691)
+.. ++..+|+.++..|.+.|++++|.++|+++...+. .+..++..++.++...|++++|..+++.+.+..+.+
T Consensus 298 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---- 372 (597)
T 2xpi_A 298 INGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEK---- 372 (597)
T ss_dssp STTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS----
T ss_pred hhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCccc----
Confidence 755 5667777777777777777777777777765432 244445555555555555555555555444443334
Q ss_pred HHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC
Q 040394 385 NALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSS 464 (691)
Q Consensus 385 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 464 (691)
..++..+...|.+.|++++|..+|+++.+.. +.
T Consensus 373 ---------------------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~ 405 (597)
T 2xpi_A 373 ---------------------------------------------AVTWLAVGIYYLCVNKISEARRYFSKSSTMD--PQ 405 (597)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT
T ss_pred ---------------------------------------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CC
Confidence 4455555555555555555555555555544 45
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040394 465 NVYVGTALLNFYAKCGDAQSARMVFDAMRE---KNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSA 541 (691)
Q Consensus 465 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 541 (691)
+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.+...
T Consensus 406 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 484 (597)
T 2xpi_A 406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVV 484 (597)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 566666666666666666666666666543 255667777777777777777777777776642 3456777777777
Q ss_pred hcccCCHHHHHHHHHHchhhc---CCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcC
Q 040394 542 CSHTGMVGEGWKCFYSMCRDF---KFVPS--MKHYVCMVDLLARAGRLEEALEFMENM-PI-EPDVSLFGAFLHGCGLYS 614 (691)
Q Consensus 542 ~~~~g~~~~A~~~~~~m~~~~---~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g 614 (691)
+.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.++++ .. +.+..+|..+..+|.+.|
T Consensus 485 ~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 564 (597)
T 2xpi_A 485 AFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKK 564 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Confidence 777777777777777774332 55676 678888888888888998888888887 33 347789999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 040394 615 RFDLGEVMIKKMLELHPDKACYYVLVSNLYAS 646 (691)
Q Consensus 615 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 646 (691)
++++|...++++++++|+++..+..++.+|..
T Consensus 565 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 565 IPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 99999999999999999999999999887653
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-38 Score=345.76 Aligned_cols=446 Identities=10% Similarity=-0.035 Sum_probs=329.1
Q ss_pred CChHHHHHHHhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHH
Q 040394 194 RDIGSSRQVFDETLDKNVVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYIL 273 (691)
Q Consensus 194 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~ 273 (691)
|....+...+..++.+++..|+.++..+.+.|++++|..+|++|.. ..|+..++..+..+|.+.|++++|..+|+.+.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 144 (597)
T 2xpi_A 67 GSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKED 144 (597)
T ss_dssp ---------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTC
T ss_pred CccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHh
Confidence 3333444444444444444455555555555555555555555442 23444444445555555555555555544443
Q ss_pred HHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-------------------ChhHHHHHHHHHHhcCCchhHHHH
Q 040394 274 KIGIEINSHLVTALLDMYVKCGNIRDARSVFDELCSI-------------------DLVSWTAMIVGYTQSGYPDKALKL 334 (691)
Q Consensus 274 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~a~~~ 334 (691)
.. +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++|.++
T Consensus 145 ~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 222 (597)
T 2xpi_A 145 LY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKEC 222 (597)
T ss_dssp GG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 21 334445555555555555555555555433221 234455555555555555555555
Q ss_pred HHHhhHC-------------------------------------CCCCcHHHHHHHHHHHhcCCChhhHHHHHHHHHHhC
Q 040394 335 FTDKKWA-------------------------------------DFFPNHVTIASVLSASAQLGNLNMGRMVHSLGIRLG 377 (691)
Q Consensus 335 ~~~m~~~-------------------------------------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 377 (691)
|++|... +..+...+|..++..|.+.|++++|..+++.+.+.
T Consensus 223 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~- 301 (597)
T 2xpi_A 223 YKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL- 301 (597)
T ss_dssp HHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-
T ss_pred HHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-
Confidence 5555443 22333344555566778889999999999998877
Q ss_pred CCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 040394 378 LEDYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLHAYST 457 (691)
Q Consensus 378 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 457 (691)
+.+..+++.++..|.+.|++++|..+|+++.+. .+.+..++..++.++.+.|+.++|..+++.+.
T Consensus 302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 366 (597)
T 2xpi_A 302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEI---------------DPYNLDVYPLHLASLHESGEKNKLYLISNDLV 366 (597)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc---------------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 358889999999999999999999999998754 23466789999999999999999999999999
Q ss_pred HcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHH
Q 040394 458 KQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE---KNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVI 534 (691)
Q Consensus 458 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 534 (691)
+.. +.+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+
T Consensus 367 ~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 443 (597)
T 2xpi_A 367 DRH--PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLP 443 (597)
T ss_dssp HHC--TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHH
T ss_pred hhC--cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHH
Confidence 876 78899999999999999999999999998864 468899999999999999999999999999864 457789
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC--HHHHHH
Q 040394 535 FTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENM-------PIEPD--VSLFGA 605 (691)
Q Consensus 535 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~ 605 (691)
++.+..+|.+.|++++|.++|+++.+. .+.+..+|+.++..|.+.|++++|+++|+++ +..|+ ..+|..
T Consensus 444 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~ 521 (597)
T 2xpi_A 444 YLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWAN 521 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHH
Confidence 999999999999999999999999654 2335889999999999999999999999998 44777 679999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCC
Q 040394 606 FLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRG 664 (691)
Q Consensus 606 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 664 (691)
++.+|.+.|++++|...++++.+..|+++.++..++.+|.+.|++++|.+.++++.+..
T Consensus 522 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 522 LGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999998854
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=4.2e-26 Score=233.65 Aligned_cols=375 Identities=12% Similarity=0.078 Sum_probs=258.8
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHccCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCH
Q 040394 219 AGYVQNDCAQEGLVLFNRMREGFVEGN-QITLGSLVTACAKLRALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNI 297 (691)
Q Consensus 219 ~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 297 (691)
..+.+.|++++|.+.++++.+.. |+ ...+..+...+...|++++|...++...+.. +.+..+|..+...+
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~------ 77 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVY------ 77 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH------
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHH------
Confidence 44555666666666666655432 22 2333333344444555555555555444432 22344444444444
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCc-HHHHHHHHHHHhcCCChhhHHHHHHHHHHh
Q 040394 298 RDARSVFDELCSIDLVSWTAMIVGYTQSGYPDKALKLFTDKKWADFFPN-HVTIASVLSASAQLGNLNMGRMVHSLGIRL 376 (691)
Q Consensus 298 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 376 (691)
.+.|++++|.+.|+++... .|+ ..++..+..++...|++++|...+..+.+.
T Consensus 78 -------------------------~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 130 (388)
T 1w3b_A 78 -------------------------KERGQLQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY 130 (388)
T ss_dssp -------------------------HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH
T ss_pred -------------------------HHCCCHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4444555555444444432 222 233444444555555555555555555555
Q ss_pred CCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 040394 377 GLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLHAYS 456 (691)
Q Consensus 377 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 456 (691)
.+.....+..+...+...|++++|...|+++... .+.+..++..+...+...|+++.|...++++
T Consensus 131 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 195 (388)
T 1w3b_A 131 NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET---------------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKA 195 (388)
T ss_dssp CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555566666666667777777766665532 1234566777777777777788888888877
Q ss_pred HHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHH
Q 040394 457 TKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE--K-NTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEV 533 (691)
Q Consensus 457 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 533 (691)
.+.+ |.+...+..+...+...|++++|...+++..+ | +..+|..+...+...|++++|+..++++.+.+ +.+..
T Consensus 196 l~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 272 (388)
T 1w3b_A 196 VTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPD 272 (388)
T ss_dssp HHHC--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHH
T ss_pred HhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHH
Confidence 7776 67778888888888888888888888887653 3 56788888889999999999999999988853 33467
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 040394 534 IFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENM-PIEP-DVSLFGAFLHGCG 611 (691)
Q Consensus 534 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 611 (691)
++..+..++.+.|++++|.+.++++.+. .+.+..++..+...+.+.|++++|.+.++++ ...| +..++..+...+.
T Consensus 273 ~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 350 (388)
T 1w3b_A 273 AYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 350 (388)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 7888888999999999999999988544 2345788899999999999999999999988 4444 5678999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCC
Q 040394 612 LYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGR 649 (691)
Q Consensus 612 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 649 (691)
+.|++++|...++++++..|+++..+..++.++...|+
T Consensus 351 ~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 351 QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999999999999999998887764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=2.4e-25 Score=228.05 Aligned_cols=352 Identities=11% Similarity=0.026 Sum_probs=309.6
Q ss_pred HHHHHhcCCHHHHHHHHHhc---CCCChhHHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCcHHHHHHHHHHHhcCCChh
Q 040394 288 LDMYVKCGNIRDARSVFDEL---CSIDLVSWTAMIVGYTQSGYPDKALKLFTDKKWADFFPNHVTIASVLSASAQLGNLN 364 (691)
Q Consensus 288 i~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 364 (691)
...+.+.|++++|.+.++.+ .+.+...+..+...+...|++++|..+++..... .+.+..+|..+...+...|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCHH
Confidence 44566778888888888776 3334556777778888899999999999887765 3457788999999999999999
Q ss_pred hHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCC-HHHHHHHHHHHhcc
Q 040394 365 MGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPD-AVTLVSVISACASL 443 (691)
Q Consensus 365 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~-~~~~~~ll~~~~~~ 443 (691)
+|...++.+.+..+.+...+..+..++.+.|++++|...|+++.+. .|+ ...+..+...+...
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~l~~~~~~~ 148 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY----------------NPDLYCVRSDLGNLLKAL 148 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH----------------CTTCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCcHHHHHHHHHHHHHc
Confidence 9999999999999888889999999999999999999999988643 344 45677788888999
Q ss_pred CcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CHhHHHHHHHHHhcCCChHHHHHHH
Q 040394 444 GAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE--K-NTVTWSAMIGGYGMQGDGGGSLALF 520 (691)
Q Consensus 444 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~ 520 (691)
|++++|...++.+.+.. |.+...+..+...+.+.|++++|...|+++.+ | +...|..+...+...|++++|+..+
T Consensus 149 g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~ 226 (388)
T 1w3b_A 149 GRLEEAKACYLKAIETQ--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAY 226 (388)
T ss_dssp SCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999987 78889999999999999999999999999874 3 5678999999999999999999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC--CC
Q 040394 521 SDMLNEEVQP-NEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEFMENM--PI 596 (691)
Q Consensus 521 ~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~--~~ 596 (691)
++..+. .| +..++..+..++...|++++|.+.++++.+ ..|+ ..++..+...+.+.|++++|++.++++ ..
T Consensus 227 ~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 301 (388)
T 1w3b_A 227 LRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301 (388)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC
T ss_pred HHHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999885 45 467888899999999999999999998854 4565 678999999999999999999999998 34
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhC
Q 040394 597 EPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQR 663 (691)
Q Consensus 597 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 663 (691)
+.+..++..+...+...|++++|...++++++..|++...+..++.+|.+.|++++|.+.++++.+.
T Consensus 302 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5577899999999999999999999999999999999999999999999999999999999999874
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.4e-27 Score=248.17 Aligned_cols=209 Identities=13% Similarity=0.067 Sum_probs=164.2
Q ss_pred HHHHHHHHHHcCCCCCc-chHHHHHHHHcccCChhHHHHHHHHHHHhCCC-ChhHHHHHHHHhHhcCChHHHHHHHhccC
Q 040394 130 IVEFYKCMRKRLKEHDN-FVFSKVLKACCELRDIDEGMKVHCEIVKVGGP-DSFVLTGLVDMYAKCRDIGSSRQVFDETL 207 (691)
Q Consensus 130 a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 207 (691)
+..+.+++.+++..+.+ ..++.+|.+|++.|++++|.++|++|.+.|.. |..+|++||.+|++.+...++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~-------- 80 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES-------- 80 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS--------
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh--------
Confidence 34455556666555444 34667777777777777777777777777743 666666666666555443221
Q ss_pred CCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCCCchHHHHHH
Q 040394 208 DKNVVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIGIEINSHLVTAL 287 (691)
Q Consensus 208 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 287 (691)
.+.+..++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+
T Consensus 81 --------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~l 146 (501)
T 4g26_A 81 --------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPA 146 (501)
T ss_dssp --------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred --------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHH
Confidence 123456889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHhc----CCCChhHHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCcHHHHHHHHHHHhcC
Q 040394 288 LDMYVKCGNIRDARSVFDEL----CSIDLVSWTAMIVGYTQSGYPDKALKLFTDKKWADFFPNHVTIASVLSASAQL 360 (691)
Q Consensus 288 i~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 360 (691)
|.+|++.|++++|.++|++| ..||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..++..
T Consensus 147 I~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 147 LFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999 67899999999999999999999999999999999999999999999988764
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=4.1e-27 Score=244.53 Aligned_cols=183 Identities=14% Similarity=0.186 Sum_probs=168.8
Q ss_pred HHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccC---------cHHHHHHHH
Q 040394 383 VINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLG---------AVQVGSSLH 453 (691)
Q Consensus 383 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~---------~~~~a~~~~ 453 (691)
+++.+|++|++.|++++|.++|++|.+. |+.||..||+.||.+|++.+ .++.|.++|
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~--------------Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf 93 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRN--------------GVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIF 93 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHH--------------TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc--------------CCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHH
Confidence 4566777888888888888888888776 89999999999999998655 478999999
Q ss_pred HHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc----CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCC
Q 040394 454 AYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE----KNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQ 529 (691)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 529 (691)
++|.+.|+ .|+..+|+++|.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|++++|.++|++|.+.|+.
T Consensus 94 ~~M~~~G~-~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~ 172 (501)
T 4g26_A 94 KQMIVDKV-VPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVV 172 (501)
T ss_dssp HHHHHTTC-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 99999998 99999999999999999999999999999984 79999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhc
Q 040394 530 PNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARA 581 (691)
Q Consensus 530 p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 581 (691)
||..||+.+|.+|++.|++++|.+++++| ++.++.|+..||+.++..|+..
T Consensus 173 Pd~~ty~~Li~~~~~~g~~d~A~~ll~~M-r~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 173 PEEPELAALLKVSMDTKNADKVYKTLQRL-RDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCHHHHHHHHHHHhhCCCHHHHHHHHHHH-HHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999 6779999999999999988753
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.4e-22 Score=216.04 Aligned_cols=426 Identities=10% Similarity=-0.045 Sum_probs=293.1
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHH
Q 040394 213 SWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIGIEINSHLVTALLDMYV 292 (691)
Q Consensus 213 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 292 (691)
.|......+.+.|++++|+..|+++...+ |+..++..+..++...|++++|...++.+.+.+ +.+..++..+..++.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 34455555666666666666666665543 556666666666666666666666666666554 224456666666666
Q ss_pred hcCCHHHHHHHHHhc---CCCChhHHHHHHHHHHhcCCchhHHHHHHHhhHCC-------------------CCCcHHHH
Q 040394 293 KCGNIRDARSVFDEL---CSIDLVSWTAMIVGYTQSGYPDKALKLFTDKKWAD-------------------FFPNHVTI 350 (691)
Q Consensus 293 ~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-------------------~~p~~~t~ 350 (691)
+.|++++|...|+++ .+.+......++..+........+.+.+..+...+ ..|+....
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 666666666666665 22233333333333333222222222222222111 12232222
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHh---cCChHHHHHHHHhCCC-----C--CchhHHHHHH
Q 040394 351 ASVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAK---CHVIADARYIFETTSE-----K--DVIAWNSIIS 420 (691)
Q Consensus 351 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~-----~--~~~~~~~li~ 420 (691)
...+..+......... ..+.+...+......+.. .|++++|...|+++.. . +...-.
T Consensus 165 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~---- 231 (514)
T 2gw1_A 165 ASFFGIFKPELTFANY---------DESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEK---- 231 (514)
T ss_dssp HHHHTTSCCCCCCSSC---------CSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHH----
T ss_pred HHHHhhcCHHHHHHHh---------cCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccc----
Confidence 2222111111110000 001134444445554444 8999999999988754 1 000000
Q ss_pred hhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCH
Q 040394 421 GLDDNVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE---KNT 497 (691)
Q Consensus 421 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~ 497 (691)
..+.+..++..+...+...|+++.|...++.+.+.. +. ...+..+...|...|++++|...++.+.+ .+.
T Consensus 232 ----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 304 (514)
T 2gw1_A 232 ----LKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNS 304 (514)
T ss_dssp ----HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCT
T ss_pred ----cChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCH
Confidence 002235677888889999999999999999999987 44 88899999999999999999999998875 367
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCC-ChhHHHHHHH
Q 040394 498 VTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVP-SMKHYVCMVD 576 (691)
Q Consensus 498 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~ 576 (691)
..|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+. .| +...+..+..
T Consensus 305 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~ 380 (514)
T 2gw1_A 305 SVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK---FPEAPEVPNFFAE 380 (514)
T ss_dssp HHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH---STTCSHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---cccCHHHHHHHHH
Confidence 789999999999999999999999999863 335678888888999999999999999988654 34 4678889999
Q ss_pred HHHhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 040394 577 LLARAGRLEEALEFMENM----PIEPD----VSLFGAFLHGCGL---YSRFDLGEVMIKKMLELHPDKACYYVLVSNLYA 645 (691)
Q Consensus 577 ~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 645 (691)
.+.+.|++++|.+.++++ +..++ ...+..+...+.. .|++++|...++++++..|+++.++..++.+|.
T Consensus 381 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 460 (514)
T 2gw1_A 381 ILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKL 460 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 999999999999999988 22222 3488899999999 999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHhCCC
Q 040394 646 SDGRWIRVNQVRELMKQRGL 665 (691)
Q Consensus 646 ~~g~~~~A~~~~~~~~~~g~ 665 (691)
+.|++++|.+.+++..+...
T Consensus 461 ~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 461 QQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HTTCHHHHHHHHHHHHHHCS
T ss_pred HhcCHHHHHHHHHHHHHhcc
Confidence 99999999999999988543
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=5.6e-22 Score=211.32 Aligned_cols=425 Identities=9% Similarity=-0.022 Sum_probs=249.6
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHh
Q 040394 113 SFQVMIRWYFLNDLYKDIVEFYKCMRKRLKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAK 192 (691)
Q Consensus 113 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (691)
.|......+.+.|++++|+..|+++.+.. |+..++..+..++.+.|++++|...++.+.+..|.+..++..++.+|.+
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 45556666777777777777777777764 5677777777777777777777777777777776677777777777777
Q ss_pred cCChHHHHHHHhccCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHH
Q 040394 193 CRDIGSSRQVFDETLD---KNVVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRALHQGKWLH 269 (691)
Q Consensus 193 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~ 269 (691)
.|++++|...|+++.. ++......++..+........+.+.+..+...+..|+...+..-...............+.
T Consensus 86 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred HhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 7777777777766522 2333334444444333333333333322222222222111111111111111111111111
Q ss_pred HHHHHHCC---------CCchHHHHHHHHHHHh---cCCHHHHHHHHHhcCC-----------------CChhHHHHHHH
Q 040394 270 GYILKIGI---------EINSHLVTALLDMYVK---CGNIRDARSVFDELCS-----------------IDLVSWTAMIV 320 (691)
Q Consensus 270 ~~~~~~g~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-----------------~~~~~~~~li~ 320 (691)
..+..... +.+...+......+.. .|++++|...|+++.. .+..+|..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 11111000 1113333333333333 5667777666665522 12345666677
Q ss_pred HHHhcCCchhHHHHHHHhhHCCCCCcHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHH
Q 040394 321 GYTQSGYPDKALKLFTDKKWADFFPNHVTIASVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADA 400 (691)
Q Consensus 321 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 400 (691)
.+...|++++|...++++.... |+...+..+...+...|++++|...++.+.+..+.+..++..+...|...|++++|
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQA 323 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 7777777777777777776653 33666666777777777777777777777777666666777777777777777777
Q ss_pred HHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcC
Q 040394 401 RYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCG 480 (691)
Q Consensus 401 ~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 480 (691)
...+++.... .+.+..++..+...+...|+++.|...++.+.+.. +.+...+..+...|.+.|
T Consensus 324 ~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~ 386 (514)
T 2gw1_A 324 GKDFDKAKEL---------------DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKN 386 (514)
T ss_dssp HHHHHHHHHT---------------CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHh---------------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCC
Confidence 7777776543 12345566667777777777777777777777665 556667777777777777
Q ss_pred CHHHHHHHHHhccc--C-C------HhHHHHHHHHHhc---CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCH
Q 040394 481 DAQSARMVFDAMRE--K-N------TVTWSAMIGGYGM---QGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMV 548 (691)
Q Consensus 481 ~~~~A~~~~~~~~~--~-~------~~~~~~li~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 548 (691)
++++|...++++.+ | + ...|..+...+.. .|++++|...++++.+.. +.+..++..+..++...|++
T Consensus 387 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~ 465 (514)
T 2gw1_A 387 DFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDI 465 (514)
T ss_dssp CHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCH
Confidence 77777777776653 1 1 2266667777777 777777777777776642 23445566666677777777
Q ss_pred HHHHHHHHHch
Q 040394 549 GEGWKCFYSMC 559 (691)
Q Consensus 549 ~~A~~~~~~m~ 559 (691)
++|.+.+++..
T Consensus 466 ~~A~~~~~~a~ 476 (514)
T 2gw1_A 466 DEAITLFEESA 476 (514)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777654
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=1.6e-21 Score=203.97 Aligned_cols=329 Identities=12% Similarity=0.047 Sum_probs=245.5
Q ss_pred hHHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCcHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhH
Q 040394 313 VSWTAMIVGYTQSGYPDKALKLFTDKKWADFFPNHVTIASVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYA 392 (691)
Q Consensus 313 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 392 (691)
..|..+...+.+.|++++|+.+|+++... .+.+..++..+..++...|++++|...++.+.+.++.+..++..+..+|.
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLL 105 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 34444555555555555555555555443 12234455555555555555555555555555555555556666666677
Q ss_pred hcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCH----HHHH------------HHHHHHhccCcHHHHHHHHHHH
Q 040394 393 KCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDA----VTLV------------SVISACASLGAVQVGSSLHAYS 456 (691)
Q Consensus 393 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~----~~~~------------~ll~~~~~~~~~~~a~~~~~~~ 456 (691)
+.|++++|...|+++... .|+. .++. .+...+...|+++.|...++.+
T Consensus 106 ~~g~~~~A~~~~~~~~~~----------------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 169 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKS----------------NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI 169 (450)
T ss_dssp HTTCHHHHHHHHHHHHTS----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhc----------------CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777777666543 2222 2222 3345588899999999999999
Q ss_pred HHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCH-
Q 040394 457 TKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE---KNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNE- 532 (691)
Q Consensus 457 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~- 532 (691)
.+.. |.+...+..+...|.+.|++++|...|+++.+ .+..+|..+...|...|++++|+..++++.+. .|+.
T Consensus 170 ~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~ 245 (450)
T 2y4t_A 170 LEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHK 245 (450)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChH
Confidence 9987 78899999999999999999999999999874 47889999999999999999999999999974 4544
Q ss_pred HHHHHH------------HHHhcccCCHHHHHHHHHHchhhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhC-
Q 040394 533 VIFTTI------------LSACSHTGMVGEGWKCFYSMCRDFKFVPS-----MKHYVCMVDLLARAGRLEEALEFMENM- 594 (691)
Q Consensus 533 ~~~~~l------------l~~~~~~g~~~~A~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~- 594 (691)
..+..+ ...+...|++++|...|+++... .|+ ...+..+..++.+.|++++|++.++++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 322 (450)
T 2y4t_A 246 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344333 67889999999999999998654 454 347888999999999999999999997
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHH------------HHHhCC-----CcHHHHHH
Q 040394 595 PIEP-DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSN------------LYASDG-----RWIRVNQV 656 (691)
Q Consensus 595 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~------------~~~~~g-----~~~~A~~~ 656 (691)
...| +..+|..+..+|...|++++|...+++++++.|+++..+..++. .|...| +.+++.+.
T Consensus 323 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~ 402 (450)
T 2y4t_A 323 QMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKA 402 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHH
T ss_pred HhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHH
Confidence 4344 67899999999999999999999999999999999999999984 455556 56677887
Q ss_pred HHH-HHhCCC
Q 040394 657 REL-MKQRGL 665 (691)
Q Consensus 657 ~~~-~~~~g~ 665 (691)
+++ .++...
T Consensus 403 y~~~~l~~~p 412 (450)
T 2y4t_A 403 YRKLALQWHP 412 (450)
T ss_dssp HHHHHHHSCG
T ss_pred HHHHHHHhCC
Confidence 776 444433
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=1.4e-21 Score=209.45 Aligned_cols=424 Identities=12% Similarity=0.038 Sum_probs=291.1
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCCCchHHHHHHHHHH
Q 040394 212 VSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIGIEINSHLVTALLDMY 291 (691)
Q Consensus 212 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 291 (691)
..|..+...+.+.|++++|++.|+++.+... .+..++..+..++...|++++|...++.+.+.+ +.+..++..+..++
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 3455566666666666666666666665432 245566666666666666666666666666654 23456666677777
Q ss_pred HhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHHHHhhHC------CCCCcHHHHHHHHHHHhcCCChhh
Q 040394 292 VKCGNIRDARSVFDELCSIDLVSWTAMIVGYTQSGYPDKALKLFTDKKWA------DFFPNHVTIASVLSASAQLGNLNM 365 (691)
Q Consensus 292 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~~ 365 (691)
...|++++|...|+.+ ..+....+..+..+...+...+|...++++... ...|+.......+ ...+.+.
T Consensus 104 ~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFF----GIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHH----HTSCHHH
T ss_pred HHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHH----HhcChHH
Confidence 7777777777777543 111112222233444445556677777666442 2234443333322 2222222
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHhHh--------cCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCC--------
Q 040394 366 GRMVHSLGIRLGLEDYTVINALVDMYAK--------CHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPD-------- 429 (691)
Q Consensus 366 a~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~-------- 429 (691)
+...+................+...+.. .|++++|..+++++.+.+ |+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~----------------p~~~~~~~~~ 242 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN----------------TVDDPLRENA 242 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC------------------CCCHHHHHHH
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC----------------CCcchhhHHH
Confidence 2221111111111111123333333322 257889999999887642 33
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHhHHHHHHHH
Q 040394 430 AVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE---KNTVTWSAMIGG 506 (691)
Q Consensus 430 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 506 (691)
..++..+...+...|+++.|...++...+.. |. ...+..+...|...|++++|...++++.+ .+..+|..+...
T Consensus 243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 319 (537)
T 3fp2_A 243 ALALCYTGIFHFLKNNLLDAQVLLQESINLH--PT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQM 319 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 2356667778889999999999999999986 34 88888999999999999999999998874 367889999999
Q ss_pred HhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChH
Q 040394 507 YGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLE 585 (691)
Q Consensus 507 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~ 585 (691)
+...|++++|...++++.+.. +.+...+..+..++...|++++|.+.++++.+. .|+ ...+..+...+...|+++
T Consensus 320 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~ 395 (537)
T 3fp2_A 320 YFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK---FPTLPEVPTFFAEILTDRGDFD 395 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHHHHHHHTTCHH
T ss_pred HHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCCHH
Confidence 999999999999999999853 334577888888999999999999999988654 344 678889999999999999
Q ss_pred HHHHHHHhC----C----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhC
Q 040394 586 EALEFMENM----P----IEPDVSLFGAFLHGCGLY----------SRFDLGEVMIKKMLELHPDKACYYVLVSNLYASD 647 (691)
Q Consensus 586 ~A~~~~~~~----~----~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 647 (691)
+|.+.++++ + .......+......+... |++++|...++++++..|+++.++..++.+|.+.
T Consensus 396 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 475 (537)
T 3fp2_A 396 TAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQM 475 (537)
T ss_dssp HHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 999999987 1 111223345556677777 9999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHhCCC
Q 040394 648 GRWIRVNQVRELMKQRGL 665 (691)
Q Consensus 648 g~~~~A~~~~~~~~~~g~ 665 (691)
|++++|.+.+++..+...
T Consensus 476 g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 476 EKIDEAIELFEDSAILAR 493 (537)
T ss_dssp TCHHHHHHHHHHHHHHC-
T ss_pred ccHHHHHHHHHHHHHhCC
Confidence 999999999999987543
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=3.8e-21 Score=206.10 Aligned_cols=445 Identities=9% Similarity=0.006 Sum_probs=289.9
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhH
Q 040394 112 YSFQVMIRWYFLNDLYKDIVEFYKCMRKRLKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYA 191 (691)
Q Consensus 112 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 191 (691)
..|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++.+.|++++|...++.+.+..+.+..++..+..++.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 456777778888888888888888888763 4466778888888888888888888888888887778888888888888
Q ss_pred hcCChHHHHHHHhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHH
Q 040394 192 KCRDIGSSRQVFDETLDKNVVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGY 271 (691)
Q Consensus 192 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 271 (691)
..|++++|...|+.+ ..+....+..+..+...+...+|...++++.... |+.
T Consensus 105 ~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~~------------------------- 156 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKD--EGR------------------------- 156 (537)
T ss_dssp HHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC--------------------------------
T ss_pred HcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC--ccc-------------------------
Confidence 888888888888643 2222222233444445555566777777764421 100
Q ss_pred HHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh---HHHHHHHHHHh--------cCCchhHHHHHHHhhH
Q 040394 272 ILKIGIEINSHLVTALLDMYVKCGNIRDARSVFDELCSIDLV---SWTAMIVGYTQ--------SGYPDKALKLFTDKKW 340 (691)
Q Consensus 272 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~--------~g~~~~a~~~~~~m~~ 340 (691)
.....|+.. .+..+....+.+.+...+......+.. ....+...+.. .|++++|..+++++..
T Consensus 157 --~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~ 230 (537)
T 3fp2_A 157 --GSQVLPSNT----SLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLS 230 (537)
T ss_dssp ----CCCCCHH----HHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred --cccccchHh----HHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 001122222 223344455556555555555333322 22222222221 2366777777777665
Q ss_pred CCCCCcH-HHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHH
Q 040394 341 ADFFPNH-VTIASVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSII 419 (691)
Q Consensus 341 ~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li 419 (691)
. .|+. ..+..+. .++..+...+...|++++|...|++...
T Consensus 231 ~--~p~~~~~~~~~~---------------------------~~~~~~g~~~~~~~~~~~A~~~~~~~~~---------- 271 (537)
T 3fp2_A 231 A--NTVDDPLRENAA---------------------------LALCYTGIFHFLKNNLLDAQVLLQESIN---------- 271 (537)
T ss_dssp ----CCCHHHHHHHH---------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH----------
T ss_pred H--CCCcchhhHHHH---------------------------HHHHHHHHHHHhcccHHHHHHHHHHHHh----------
Confidence 4 2321 1111111 1234455566666777777777766653
Q ss_pred HhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CC
Q 040394 420 SGLDDNVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE---KN 496 (691)
Q Consensus 420 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~ 496 (691)
..|+..++..+...+...|+++.|...++.+.+.. |.+..++..+...|...|++++|...+++..+ .+
T Consensus 272 ------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 343 (537)
T 3fp2_A 272 ------LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN--PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN 343 (537)
T ss_dssp ------HCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ------cCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Confidence 24556667777777777788888888888777776 66777788888888888888888888887763 25
Q ss_pred HhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC----hhHHH
Q 040394 497 TVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS----MKHYV 572 (691)
Q Consensus 497 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~ 572 (691)
...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+...-.++ ...+.
T Consensus 344 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 422 (537)
T 3fp2_A 344 VYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLI 422 (537)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHH
Confidence 6678888888888888888888888888753 334567777778888888999988888877543211111 22344
Q ss_pred HHHHHHHhc----------CChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 040394 573 CMVDLLARA----------GRLEEALEFMENM-P-IEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVL 639 (691)
Q Consensus 573 ~li~~~~~~----------g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 639 (691)
.+...+.+. |++++|.+.+++. . .+.+...+..+...+...|++++|...+++++++.|++......
T Consensus 423 ~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQA 501 (537)
T ss_dssp HHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHH
T ss_pred HHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 455677777 9999999999988 3 33456788999999999999999999999999999997665543
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=2.2e-20 Score=195.27 Aligned_cols=362 Identities=10% Similarity=-0.031 Sum_probs=262.6
Q ss_pred ChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhc---CCCChhHHHHHHHH
Q 040394 245 NQITLGSLVTACAKLRALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNIRDARSVFDEL---CSIDLVSWTAMIVG 321 (691)
Q Consensus 245 ~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~ 321 (691)
+...+..+...+.+.|++++|..+|+.+.+.. +.+..++..+..++...|++++|...|+++ .+.+..+|..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 44556666666667777777777777666553 234566666666666777777777766665 22345566666666
Q ss_pred HHhcCCchhHHHHHHHhhHCCCCCcH----HHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCCh
Q 040394 322 YTQSGYPDKALKLFTDKKWADFFPNH----VTIASVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVI 397 (691)
Q Consensus 322 ~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 397 (691)
|.+.|++++|.+.|+++... .|+. ..+..+...+.. ..+..+...+...|++
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~----------------------~~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEM----------------------QRLRSQALNAFGSGDY 159 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHTCH
T ss_pred HHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHH----------------------HHHHHHHHHHHHcCCH
Confidence 66666777776666666654 3332 333333322111 1123345568889999
Q ss_pred HHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHH
Q 040394 398 ADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYA 477 (691)
Q Consensus 398 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 477 (691)
++|...|+++.+. .+.+..++..+..++...|++++|...++.+.+.. |.+..++..+...|.
T Consensus 160 ~~A~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~ 222 (450)
T 2y4t_A 160 TAAIAFLDKILEV---------------CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK--NDNTEAFYKISTLYY 222 (450)
T ss_dssp HHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH--CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---------------CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 9999999988653 24567889999999999999999999999999887 788999999999999
Q ss_pred hcCCHHHHHHHHHhccc--C-CHhHHHHH------------HHHHhcCCChHHHHHHHHHHHHCCCCCC-----HHHHHH
Q 040394 478 KCGDAQSARMVFDAMRE--K-NTVTWSAM------------IGGYGMQGDGGGSLALFSDMLNEEVQPN-----EVIFTT 537 (691)
Q Consensus 478 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l------------i~~~~~~~~~~~A~~~~~~m~~~g~~p~-----~~~~~~ 537 (691)
..|++++|...|+++.+ | +...+..+ ...+...|++++|...|+++.+. .|+ ...+..
T Consensus 223 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~ 300 (450)
T 2y4t_A 223 QLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKER 300 (450)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHH
Confidence 99999999999998874 3 44455544 88899999999999999999984 555 346788
Q ss_pred HHHHhcccCCHHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHH-----
Q 040394 538 ILSACSHTGMVGEGWKCFYSMCRDFKFVP-SMKHYVCMVDLLARAGRLEEALEFMENM-PIEPD-VSLFGAFLHG----- 609 (691)
Q Consensus 538 ll~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~----- 609 (691)
+..++.+.|++++|...++++... .| +...+..+..+|...|++++|.+.++++ ...|+ ...+..+..+
T Consensus 301 l~~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 377 (450)
T 2y4t_A 301 ICHCFSKDEKPVEAIRVCSEVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLK 377 (450)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhh
Confidence 888999999999999999988543 45 4789999999999999999999999998 66665 4566555532
Q ss_pred -------HHhcC-----CHHHHHHHHHH-HHhcCCCCch----------hHHHHHHHHHhCCCcHHH
Q 040394 610 -------CGLYS-----RFDLGEVMIKK-MLELHPDKAC----------YYVLVSNLYASDGRWIRV 653 (691)
Q Consensus 610 -------~~~~g-----~~~~A~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~A 653 (691)
|...| +.+++.+.+++ +++.+|++.. .+..+..+|...|+.+++
T Consensus 378 ~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 378 QSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp HHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred cccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 33334 66788888887 6778887532 344555566666655544
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=1.8e-18 Score=174.56 Aligned_cols=309 Identities=12% Similarity=0.047 Sum_probs=213.4
Q ss_pred hHHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCcHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhH
Q 040394 313 VSWTAMIVGYTQSGYPDKALKLFTDKKWADFFPNHVTIASVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYA 392 (691)
Q Consensus 313 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 392 (691)
..+..+...+...|++++|+..|+++.... +.+..++..+...+...|++++|...++.+.+..+.+...+..+...+.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 345555566666666666666666665542 2234555566666666666666666666666666666667777777777
Q ss_pred hcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCC----CHHHHHHH------------HHHHhccCcHHHHHHHHHHH
Q 040394 393 KCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSP----DAVTLVSV------------ISACASLGAVQVGSSLHAYS 456 (691)
Q Consensus 393 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p----~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~ 456 (691)
..|++++|...|++..+. .| +...+..+ ...+...|+++.|...++.+
T Consensus 83 ~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 146 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS----------------NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKI 146 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHhc----------------CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 778888887777776543 23 22222222 56778889999999999998
Q ss_pred HHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCH-
Q 040394 457 TKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE---KNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNE- 532 (691)
Q Consensus 457 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~- 532 (691)
.+.. |.+...+..+...+...|++++|...+++..+ .+...|..+...+...|++++|...+++..+. .|+.
T Consensus 147 ~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~ 222 (359)
T 3ieg_A 147 LEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHK 222 (359)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHhC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Cccch
Confidence 8887 67788888888999999999999999988764 36778888888888899999999999888874 3433
Q ss_pred HHHHH------------HHHHhcccCCHHHHHHHHHHchhhcCCCCCh-----hHHHHHHHHHHhcCChHHHHHHHHhC-
Q 040394 533 VIFTT------------ILSACSHTGMVGEGWKCFYSMCRDFKFVPSM-----KHYVCMVDLLARAGRLEEALEFMENM- 594 (691)
Q Consensus 533 ~~~~~------------ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~- 594 (691)
..+.. +...+...|++++|...+++..+. .|+. ..+..+...+...|++++|++.+++.
T Consensus 223 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 299 (359)
T 3ieg_A 223 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVL 299 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 32221 244566777888888777776543 2331 23445666777777777777777776
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 040394 595 PIEP-DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYA 645 (691)
Q Consensus 595 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 645 (691)
...| +..++..+...+...|++++|...++++++..|+++..+..+..+..
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 300 QMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 3233 55677777777777777777777777777777777777666665543
No 14
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.84 E-value=2.9e-15 Score=164.59 Aligned_cols=509 Identities=12% Similarity=0.092 Sum_probs=350.4
Q ss_pred HHHHHHHHHHhCCCCchhhhHHHHHHhcCCChHHHHHHhccCCCCCcchHH-HHHHHHHhCCChhHHHHHHHH------H
Q 040394 65 LKAFHALLIVDGLTNDKCNTKLVSMYGSFGHVKYARSVFDSMPNPDFYSFQ-VMIRWYFLNDLYKDIVEFYKC------M 137 (691)
Q Consensus 65 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~------m 137 (691)
.....+..+..|.....++|.|+.+|...++-.+. ++.+= .-|. .++.-||...++.-|.-.|++ +
T Consensus 858 l~p~LE~~~~~g~~~~~~hnalakiyid~n~npe~--fL~~n-----~~yd~~~vgkyce~rDp~la~iay~~g~~d~el 930 (1630)
T 1xi4_A 858 LLPWLEARIHEGCEEPATHNALAKIYIDSNNNPER--FLREN-----PYYDSRVVGKYCEKRDPHLACVAYERGQCDLEL 930 (1630)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCHHH--Hhhcc-----CcccHHHHHHHHHhcCcchHHHHhcccCCcHHH
Confidence 33345555555554444899999999977664432 22211 1122 233445555554444444432 0
Q ss_pred HHcCCCCCcchHHHHHHHHcccCChh-----------HHHHHHHHHHHhCCC---ChhHHHHHHHHhHhcCChHHHHHHH
Q 040394 138 RKRLKEHDNFVFSKVLKACCELRDID-----------EGMKVHCEIVKVGGP---DSFVLTGLVDMYAKCRDIGSSRQVF 203 (691)
Q Consensus 138 ~~~~~~~~~~~~~~ll~~~~~~~~~~-----------~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~ 203 (691)
+. +.-....|....+-+.+..+.+ .=..+.++......| ++.--...+..|...|.+.+|++++
T Consensus 931 i~--vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLL 1008 (1630)
T 1xi4_A 931 IN--VCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELL 1008 (1630)
T ss_pred HH--HHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHH
Confidence 00 1111122333333333332222 223444444444433 6667778888899999999999999
Q ss_pred hccCC-C-----ChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCC
Q 040394 204 DETLD-K-----NVVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIGI 277 (691)
Q Consensus 204 ~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~ 277 (691)
+++.- | +...-+.++.+..+. +..+..+...+.... + ..-+...+...|.+++|..+|+...
T Consensus 1009 EKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyEEAf~IYkKa~---- 1076 (1630)
T 1xi4_A 1009 EKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNELFEEAFAIFRKFD---- 1076 (1630)
T ss_pred HHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcC----
Confidence 98742 2 234566677777766 556777776665421 1 2336677888999999999998852
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCcHHHHHHHHHHH
Q 040394 278 EINSHLVTALLDMYVKCGNIRDARSVFDELCSIDLVSWTAMIVGYTQSGYPDKALKLFTDKKWADFFPNHVTIASVLSAS 357 (691)
Q Consensus 278 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 357 (691)
-.....+.++. ..|++++|.++.+++. +..+|..+..++...|++++|++.|.+. -|...|..++.++
T Consensus 1077 -~~~~A~~VLie---~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~ 1144 (1630)
T 1xi4_A 1077 -VNTSAVQVLIE---HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAA 1144 (1630)
T ss_pred -CHHHHHHHHHH---HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHH
Confidence 12222333433 7788999999999773 4678889999999999999999999663 4778888899999
Q ss_pred hcCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHH
Q 040394 358 AQLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVI 437 (691)
Q Consensus 358 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll 437 (691)
.+.|+++++.+++....+... ++.+.+.++.+|++.+++++.....+ .|+...+..+.
T Consensus 1145 ~~lGkyEEAIeyL~mArk~~~-e~~Idt~LafaYAKl~rleele~fI~---------------------~~n~ad~~~iG 1202 (1630)
T 1xi4_A 1145 NTSGNWEELVKYLQMARKKAR-ESYVETELIFALAKTNRLAELEEFIN---------------------GPNNAHIQQVG 1202 (1630)
T ss_pred HHcCCHHHHHHHHHHHHhhcc-cccccHHHHHHHHhhcCHHHHHHHHh---------------------CCCHHHHHHHH
Confidence 999999999999998877663 33334469999999999886444431 24556777888
Q ss_pred HHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHhHHHHHHHHHhcCCChHHHH
Q 040394 438 SACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMREKNTVTWSAMIGGYGMQGDGGGSL 517 (691)
Q Consensus 438 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 517 (691)
..|...|++++|..+|... ..|..+...|.+.|++++|.+.+++. .+..+|..+..+|...|++..|.
T Consensus 1203 d~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~LA~ 1270 (1630)
T 1xi4_A 1203 DRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQ 1270 (1630)
T ss_pred HHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHHHH
Confidence 9999999999999999874 47888999999999999999999987 46789999999999999999888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhc--CChHHHHHHHHhC
Q 040394 518 ALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARA--GRLEEALEFMENM 594 (691)
Q Consensus 518 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~--g~~~~A~~~~~~~ 594 (691)
..... +..+...+..++..|.+.|.+++|+.+++.. .++.|. ..+|.-|..+|.+- ++..+++++|..-
T Consensus 1271 ~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~a---L~LeraH~gmftELaiLyaKy~peklmEhlk~f~~r 1342 (1630)
T 1xi4_A 1271 MCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAA---LGLERAHMGMFTELAILYSKFKPQKMREHLELFWSR 1342 (1630)
T ss_pred HHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHH---hccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 87653 3446667778889999999999999999744 366655 56777777777654 4566666665554
Q ss_pred -CCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh------------cCCCCchhHHHHHHHHHhCC
Q 040394 595 -PIEP------DVSLFGAFLHGCGLYSRFDLGEVMIKKMLE------------LHPDKACYYVLVSNLYASDG 648 (691)
Q Consensus 595 -~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------~~p~~~~~~~~l~~~~~~~g 648 (691)
.++| +...|..++-.|.+.|+++.|...+-+-.. ..+.++..|+..+..|...+
T Consensus 1343 ini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1343 VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred cccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhC
Confidence 5444 556899999999999999999843333221 25667888887778777666
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=4.6e-18 Score=171.59 Aligned_cols=298 Identities=11% Similarity=-0.000 Sum_probs=254.6
Q ss_pred cHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCC
Q 040394 346 NHVTIASVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDN 425 (691)
Q Consensus 346 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 425 (691)
|...+..+...+...|++++|...++.+.+..+.+...+..+...+...|++++|...++++.+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------------- 66 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--------------- 66 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---------------
Confidence 45567778888999999999999999999999999999999999999999999999999988653
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCC---CchhHHHHH------------HHHHHhcCCHHHHHHHHH
Q 040394 426 VSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLS---SNVYVGTAL------------LNFYAKCGDAQSARMVFD 490 (691)
Q Consensus 426 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~g~~~~A~~~~~ 490 (691)
.+.+...+..+...+...|++++|...++.+.+.. | .+...+..+ ...+...|++++|...++
T Consensus 67 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 144 (359)
T 3ieg_A 67 KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLD 144 (359)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 12356788899999999999999999999999876 5 566666555 578899999999999999
Q ss_pred hccc---CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC
Q 040394 491 AMRE---KNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS 567 (691)
Q Consensus 491 ~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~ 567 (691)
++.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.++...+. .|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~ 220 (359)
T 3ieg_A 145 KILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQD 220 (359)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTT
T ss_pred HHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---Ccc
Confidence 8874 367889999999999999999999999999863 456778888889999999999999999988544 444
Q ss_pred -hhHHH------------HHHHHHHhcCChHHHHHHHHhC-CCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040394 568 -MKHYV------------CMVDLLARAGRLEEALEFMENM-PIEPDV-----SLFGAFLHGCGLYSRFDLGEVMIKKMLE 628 (691)
Q Consensus 568 -~~~~~------------~li~~~~~~g~~~~A~~~~~~~-~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (691)
...+. .+...+.+.|++++|.+.++++ ...|+. ..+..+...+...|++++|...++++.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 300 (359)
T 3ieg_A 221 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQ 300 (359)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33222 2366789999999999999998 333442 2355677889999999999999999999
Q ss_pred cCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCC
Q 040394 629 LHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRG 664 (691)
Q Consensus 629 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 664 (691)
..|+++.++..++.+|...|++++|.+.+++..+..
T Consensus 301 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 301 MEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999864
No 16
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=1.1e-14 Score=160.05 Aligned_cols=313 Identities=10% Similarity=0.091 Sum_probs=199.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCCh
Q 040394 117 MIRWYFLNDLYKDIVEFYKCMRKRLKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDI 196 (691)
Q Consensus 117 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 196 (691)
+...+...|.+++|..+|++.. -.....+.++. ..+++++|.++.++. .++.+|..+..++.+.|++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCH
Confidence 4455566666777777666641 11111222222 445666666665533 3567777788888888888
Q ss_pred HHHHHHHhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHC
Q 040394 197 GSSRQVFDETLDKNVVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIG 276 (691)
Q Consensus 197 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g 276 (691)
++|...|.+. .|...|..++..+.+.|++++|.+.|...++.. +++...+.+..+|++.+++++...+. +
T Consensus 1122 kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~-- 1191 (1630)
T 1xi4_A 1122 KEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N-- 1191 (1630)
T ss_pred HHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h--
Confidence 8888777653 566677777778888888888888777766543 33223334777777777776544332 1
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCcHHHHHHHHHH
Q 040394 277 IEINSHLVTALLDMYVKCGNIRDARSVFDELCSIDLVSWTAMIVGYTQSGYPDKALKLFTDKKWADFFPNHVTIASVLSA 356 (691)
Q Consensus 277 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 356 (691)
.++...+..+...|...|++++|..+|... ..|..+...|++.|++++|.+.+++. -+..+|..+-.+
T Consensus 1192 -~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~a 1259 (1630)
T 1xi4_A 1192 -GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFA 1259 (1630)
T ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHH
Confidence 345555666777777888888888888774 47777888888888888888887764 355777777777
Q ss_pred HhcCCChhhHHHHHHHHHHhCCC-chhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHH
Q 040394 357 SAQLGNLNMGRMVHSLGIRLGLE-DYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVS 435 (691)
Q Consensus 357 ~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ 435 (691)
|...|++..|...... +. ++..+..++..|.+.|.+++|..+++.....+ +-....|+.
T Consensus 1260 cve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le---------------raH~gmftE 1319 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE---------------RAHMGMFTE 1319 (1630)
T ss_pred HhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC---------------hhHhHHHHH
Confidence 7777777777665432 22 55566778888888888888888887765432 123334555
Q ss_pred HHHHHhc--cCcHHHHHHHHHHHHHcCCCC------CchhHHHHHHHHHHhcCCHHHHHH
Q 040394 436 VISACAS--LGAVQVGSSLHAYSTKQGLLS------SNVYVGTALLNFYAKCGDAQSARM 487 (691)
Q Consensus 436 ll~~~~~--~~~~~~a~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~ 487 (691)
+...+++ -+++.++.+.|..- .++ | .+...|..++..|.+.|+++.|..
T Consensus 1320 LaiLyaKy~peklmEhlk~f~~r--ini-~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1320 LAILYSKFKPQKMREHLELFWSR--VNI-PKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--ccc-chHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 5555544 33444444444422 221 2 245667778888888888888773
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=5.6e-18 Score=168.86 Aligned_cols=281 Identities=11% Similarity=0.057 Sum_probs=173.4
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHH
Q 040394 353 VLSASAQLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVT 432 (691)
Q Consensus 353 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~ 432 (691)
+...+...|++++|..+++.+.+..+.+...+..++..+...|++++|...++++.+. .+.+...
T Consensus 28 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---------------~~~~~~~ 92 (330)
T 3hym_B 28 LAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDL---------------YPSNPVS 92 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------CTTSTHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh---------------CcCCHHH
Confidence 3333333444444444444444444444444444444444555555555555444322 1123344
Q ss_pred HHHHHHHHhccC-cHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CHhHHHHHHHHHh
Q 040394 433 LVSVISACASLG-AVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE--K-NTVTWSAMIGGYG 508 (691)
Q Consensus 433 ~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~ 508 (691)
+..+...+...| +++.|...++...+.. |.+...+..+...+...|++++|...+++..+ | +...+..+...|.
T Consensus 93 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 170 (330)
T 3hym_B 93 WFAVGCYYLMVGHKNEHARRYLSKATTLE--KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYG 170 (330)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHTTC--TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 444455555555 5555555555555544 44555566666666666666666666665543 2 3445555666666
Q ss_pred cCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcC-------CCCChhHHHHHHHHHHhc
Q 040394 509 MQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFK-------FVPSMKHYVCMVDLLARA 581 (691)
Q Consensus 509 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~-------~~p~~~~~~~li~~~~~~ 581 (691)
..|++++|...+++..+.. +.+...+..+...+...|++++|...+++...... .......+..+...+.+.
T Consensus 171 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 249 (330)
T 3hym_B 171 LTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL 249 (330)
T ss_dssp HTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh
Confidence 6777777777777666642 33455666666677777777777777776644321 122356788888888899
Q ss_pred CChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH-HhCCCcH
Q 040394 582 GRLEEALEFMENM-P-IEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLY-ASDGRWI 651 (691)
Q Consensus 582 g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 651 (691)
|++++|++.+++. . .+.+...+..+...+...|++++|...++++++..|+++..+..++.++ ...|+.+
T Consensus 250 g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 250 KKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred cCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999888887 2 2335678888999999999999999999999999999999999999888 4555543
No 18
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=5.8e-17 Score=159.94 Aligned_cols=286 Identities=13% Similarity=0.105 Sum_probs=104.1
Q ss_pred cCCChHHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHcccCChhHHHHHHHH
Q 040394 92 SFGHVKYARSVFDSMPNPDFYSFQVMIRWYFLNDLYKDIVEFYKCMRKRLKEHDNFVFSKVLKACCELRDIDEGMKVHCE 171 (691)
Q Consensus 92 ~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 171 (691)
+.|++++|.+.+++++.|+ +|..|..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|+..++.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5566777777777775543 677777777777777777777743 24666777777777777777777775555
Q ss_pred HHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHH
Q 040394 172 IVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDETLDKNVVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGS 251 (691)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 251 (691)
..+. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|..
T Consensus 87 ark~-~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~ 153 (449)
T 1b89_A 87 ARKK-ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGR 153 (449)
T ss_dssp -----------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHH
T ss_pred HHHh-CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHH
Confidence 5443 33566677777777777777777666643 55667777777777777777777777765 35667
Q ss_pred HHHHHHccCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhH
Q 040394 252 LVTACAKLRALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNIRDARSVFDELCSIDLVSWTAMIVGYTQSGYPDKA 331 (691)
Q Consensus 252 li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 331 (691)
+..++.+.|++++|.+.+..+ .++.+|..++.+|+..|+++.|......+. .++.-...++..|.+.|++++|
T Consensus 154 LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEa 226 (449)
T 1b89_A 154 LASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEEL 226 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHH
Confidence 777777777777777777666 256677777777777777777766555543 3333344566667777777777
Q ss_pred HHHHHHhhHCCCCCcHHHHHHHHHHHhc--CCChhhHHHHHHHHHHhCC-----CchhHHHHHHHHhHhcCChHHHHHHH
Q 040394 332 LKLFTDKKWADFFPNHVTIASVLSASAQ--LGNLNMGRMVHSLGIRLGL-----EDYTVINALVDMYAKCHVIADARYIF 404 (691)
Q Consensus 332 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~ 404 (691)
..+++...... +.....|+.+--.+++ .+++.+..+.|.......+ .....|..++..|.+.++++.|....
T Consensus 227 i~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 227 ITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 77776655432 2233444444333332 3334444443332222221 13556677777777788888776644
Q ss_pred Hh
Q 040394 405 ET 406 (691)
Q Consensus 405 ~~ 406 (691)
-.
T Consensus 306 ~~ 307 (449)
T 1b89_A 306 MN 307 (449)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.78 E-value=4.3e-16 Score=155.08 Aligned_cols=265 Identities=11% Similarity=0.014 Sum_probs=169.0
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHH
Q 040394 109 PDFYSFQVMIRWYFLNDLYKDIVEFYKCMRKRLKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVD 188 (691)
Q Consensus 109 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 188 (691)
.+...+..+...+...|++++|+++|+++.+.. +.+...+..++..+...|++++|...++.+.+..+.+..++..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 455566666777777777777777777776653 3344555566666667777777777777777766666666666666
Q ss_pred HhHhcC-ChHHHHHHHhccCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhh
Q 040394 189 MYAKCR-DIGSSRQVFDETLD---KNVVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRALHQ 264 (691)
Q Consensus 189 ~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~ 264 (691)
.+...| ++++|...|++..+ .+...|..+...+...|++++|.+.|++..+....
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------------------- 157 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG--------------------- 157 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT---------------------
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc---------------------
Confidence 666666 66666666665432 23455666666666666666666666666543211
Q ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhc---CCCChhHHHHHHHHHHhcCCchhHHHHHHHhhHC
Q 040394 265 GKWLHGYILKIGIEINSHLVTALLDMYVKCGNIRDARSVFDEL---CSIDLVSWTAMIVGYTQSGYPDKALKLFTDKKWA 341 (691)
Q Consensus 265 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 341 (691)
+...+..+...+...|++++|.+.|++. .+.+..++..+...+...|++++|...+++....
T Consensus 158 ---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 222 (330)
T 3hym_B 158 ---------------CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEK 222 (330)
T ss_dssp ---------------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 2233344455555555555555555554 1223445556666666666666666666665443
Q ss_pred C--------CCCcHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCC
Q 040394 342 D--------FFPNHVTIASVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEK 410 (691)
Q Consensus 342 g--------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 410 (691)
. ...+..++..+...+...|++++|...++.+.+..+.+..++..+...|.+.|++++|...|++..+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 223 IKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred hhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 1 12234566667777777777777777777777777777777888888888888888888888888754
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=4.2e-15 Score=158.31 Aligned_cols=417 Identities=9% Similarity=0.003 Sum_probs=226.1
Q ss_pred CcchHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhccCC--CChhhHHHHHHHH-
Q 040394 145 DNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDETLD--KNVVSWTSMIAGY- 221 (691)
Q Consensus 145 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~- 221 (691)
+...|..++.. .+.|++++|..+|+.+++..|.+...|..++..+.+.|++++|.++|++... |++..|...+...
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~ 90 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVR 90 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 55566666663 5667777777777777776666777777777777777777777777777644 5555565555422
Q ss_pred HhCCChhHHHH----HHHHHHh-CCCCC-ChhhHHHHHHHHHc---------cCChhhHHHHHHHHHHHCCCCchHHHHH
Q 040394 222 VQNDCAQEGLV----LFNRMRE-GFVEG-NQITLGSLVTACAK---------LRALHQGKWLHGYILKIGIEINSHLVTA 286 (691)
Q Consensus 222 ~~~g~~~~A~~----~~~~m~~-~~~~p-~~~t~~~li~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 286 (691)
...|+.++|.+ +|++... .|..| +...|...+..... .|+++.|..+|+..++....+....|..
T Consensus 91 ~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~ 170 (530)
T 2ooe_A 91 ETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRD 170 (530)
T ss_dssp HHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHH
T ss_pred HHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHH
Confidence 34566665554 5554433 23333 23344444443332 4555566666655554110001122222
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHHHHh------hHCC---CCCc--------HHH
Q 040394 287 LLDMYVKCGNIRDARSVFDELCSIDLVSWTAMIVGYTQSGYPDKALKLFTDK------KWAD---FFPN--------HVT 349 (691)
Q Consensus 287 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m------~~~g---~~p~--------~~t 349 (691)
........|. ..+..++. .+.++++.|..++.++ .+.. +.|+ ...
T Consensus 171 ~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~ 232 (530)
T 2ooe_A 171 YNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDM 232 (530)
T ss_dssp HHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHH
T ss_pred HHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHH
Confidence 2111100000 00111110 1234456666655542 1111 2343 234
Q ss_pred HHHHHHHHhcC----CCh----hhHHHHHHHHHHhCCCchhHHHHHHHHhHh-------cCChH-------HHHHHHHhC
Q 040394 350 IASVLSASAQL----GNL----NMGRMVHSLGIRLGLEDYTVINALVDMYAK-------CHVIA-------DARYIFETT 407 (691)
Q Consensus 350 ~~~ll~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~ 407 (691)
|...+...... ++. ..+..+++.+....+.++.+|..++..+.+ .|+++ +|..+|++.
T Consensus 233 w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~A 312 (530)
T 2ooe_A 233 WKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERA 312 (530)
T ss_dssp HHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHH
Confidence 44444332221 222 366778999999888888899888888876 78877 788888887
Q ss_pred CCCCchhHHHHHHhhhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCch-hHHHHHHHHHHhcCCHHHH
Q 040394 408 SEKDVIAWNSIISGLDDNVSP-DAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNV-YVGTALLNFYAKCGDAQSA 485 (691)
Q Consensus 408 ~~~~~~~~~~li~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A 485 (691)
.+. +.| +...|..+...+.+.|+++.|..+|+.+.+.. |.+. ..|..++..+.+.|++++|
T Consensus 313 l~~---------------~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A 375 (530)
T 2ooe_A 313 IST---------------LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSG 375 (530)
T ss_dssp TTT---------------TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS--SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH---------------hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc--ccCchHHHHHHHHHHHHhcCHHHH
Confidence 642 223 35566666666666677777777777766643 2232 3455555555555555555
Q ss_pred HHHHHhcccCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HhcccCCHHHHHHHHHHchhhcCC
Q 040394 486 RMVFDAMREKNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILS-ACSHTGMVGEGWKCFYSMCRDFKF 564 (691)
Q Consensus 486 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~g~~~~A~~~~~~m~~~~~~ 564 (691)
..+|++ ..+.. +.+...|..... .+...|+.++|..+|+...+.
T Consensus 376 ~~~~~~-------------------------------Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--- 420 (530)
T 2ooe_A 376 RMIFKK-------------------------------AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--- 420 (530)
T ss_dssp HHHHHH-------------------------------HHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH---
T ss_pred HHHHHH-------------------------------HHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH---
Confidence 555554 44321 111112211111 122356666666666655433
Q ss_pred CCC-hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 040394 565 VPS-MKHYVCMVDLLARAGRLEEALEFMENM----PIEPD--VSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPD 632 (691)
Q Consensus 565 ~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 632 (691)
.|+ ...|..++..+.+.|+.++|..+|++. +..|+ ...|...+......|+.+.+..+.+++.+..|+
T Consensus 421 ~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 421 YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 233 455666666666666666666666665 11222 236666666666777777777777777776664
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.77 E-value=5.3e-15 Score=155.85 Aligned_cols=364 Identities=11% Similarity=-0.011 Sum_probs=229.9
Q ss_pred cCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHh----cCCch
Q 040394 259 LRALHQGKWLHGYILKIGIEINSHLVTALLDMYVK----CGNIRDARSVFDELCS-IDLVSWTAMIVGYTQ----SGYPD 329 (691)
Q Consensus 259 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~ 329 (691)
.++.++|...|+...+.| +...+..|...|.. .++.++|.+.|++... .+...+..|...|.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHH
Confidence 444445555554444432 33344444444444 4555555555554422 233444444444544 45555
Q ss_pred hHHHHHHHhhHCCCCCcHHHHHHHHHHHhc----CCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHh----cCChHHHH
Q 040394 330 KALKLFTDKKWADFFPNHVTIASVLSASAQ----LGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAK----CHVIADAR 401 (691)
Q Consensus 330 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 401 (691)
+|++.|++..+.| +...+..+...+.. .++.++|...++...+.+ +...+..+...|.. .++.++|.
T Consensus 133 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~ 207 (490)
T 2xm6_A 133 ESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG--NVWSCNQLGYMYSRGLGVERNDAISA 207 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhcCCCCCcCHHHHH
Confidence 5555555555443 23334444444443 455666666665555543 34455556666665 67777777
Q ss_pred HHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHH
Q 040394 402 YIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACAS----LGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYA 477 (691)
Q Consensus 402 ~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 477 (691)
..|++..+. .+...+..+...+.. .++.++|...++...+.+ ++..+..+...|.
T Consensus 208 ~~~~~a~~~-----------------~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~ 266 (490)
T 2xm6_A 208 QWYRKSATS-----------------GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG----NSIAQFRLGYILE 266 (490)
T ss_dssp HHHHHHHHT-----------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT----CHHHHHHHHHHHH
T ss_pred HHHHHHHHC-----------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHH
Confidence 777765433 234455555555554 677888888888777655 2445556666676
Q ss_pred h----cCCHHHHHHHHHhcccC-CHhHHHHHHHHHhcC-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC-
Q 040394 478 K----CGDAQSARMVFDAMREK-NTVTWSAMIGGYGMQ-----GDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTG- 546 (691)
Q Consensus 478 ~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g- 546 (691)
. .++.++|...|++..+. +...+..+...|... +++++|+..+++..+.| +...+..+-..+...|
T Consensus 267 ~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~ 343 (490)
T 2xm6_A 267 QGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGS 343 (490)
T ss_dssp HTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCC
Confidence 6 78888888888887654 566777777777776 88999999999988865 3445555555555545
Q ss_pred --CHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCH
Q 040394 547 --MVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLAR----AGRLEEALEFMENMPIEPDVSLFGAFLHGCGL----YSRF 616 (691)
Q Consensus 547 --~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~ 616 (691)
++++|.+.|++..+. .+...+..|...|.. .+++++|+++|++.-...+...+..|...|.. .+|.
T Consensus 344 ~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~ 419 (490)
T 2xm6_A 344 EEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDY 419 (490)
T ss_dssp HHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred cccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCH
Confidence 788999999887433 356778888888888 78999999999987323467788888888887 7999
Q ss_pred HHHHHHHHHHHhcCCC---CchhHHHHHHHHHhCCCcHHHHHHHHHH
Q 040394 617 DLGEVMIKKMLELHPD---KACYYVLVSNLYASDGRWIRVNQVRELM 660 (691)
Q Consensus 617 ~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 660 (691)
++|...++++.+..|+ ++.....++.++.. +.+.+.+..+++
T Consensus 420 ~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~ 464 (490)
T 2xm6_A 420 VQAWAWFDTASTNDMNLFGTENRNITEKKLTAK--QLQQAELLSQQY 464 (490)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHHHH
Confidence 9999999999998854 66677777666554 334444333333
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=6.9e-15 Score=156.64 Aligned_cols=415 Identities=10% Similarity=0.060 Sum_probs=270.8
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCCCchHHHHHHHH
Q 040394 210 NVVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIGIEINSHLVTALLD 289 (691)
Q Consensus 210 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 289 (691)
+...|..++. +.+.|++++|..+|+++.+.. +-+...|...+..+.+.|+.++|..+|+..++.. |+...|..++.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 5667777777 467788888888888887642 2345566777777777777777777777776653 46656666554
Q ss_pred HH-HhcCCHHHHHH----HHHhc------CCCChhHHHHHHHHHHh---------cCCchhHHHHHHHhhHCCCCCcHHH
Q 040394 290 MY-VKCGNIRDARS----VFDEL------CSIDLVSWTAMIVGYTQ---------SGYPDKALKLFTDKKWADFFPNHVT 349 (691)
Q Consensus 290 ~~-~~~g~~~~A~~----~~~~~------~~~~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~g~~p~~~t 349 (691)
.. ...|+.+.|.+ +|+.. ...+...|...+....+ .|++++|..+|++.......+....
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 32 33455555544 44443 11244556666554443 4666677777776665211111222
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhC---CC
Q 040394 350 IASVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDD---NV 426 (691)
Q Consensus 350 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~---~~ 426 (691)
|..........|. ..+. .++. .+.+++..|..+++... ....++.. .+
T Consensus 168 ~~~~~~~e~~~~~-~~~~------------------~~l~--~~~~~~~~A~~~~~~~~--------~~~~~l~~~~~~~ 218 (530)
T 2ooe_A 168 WRDYNKYEEGINI-HLAK------------------KMIE--DRSRDYMNARRVAKEYE--------TVMKGLDRNAPSV 218 (530)
T ss_dssp HHHHHHHHHHHCH-HHHH------------------HHHH--TTHHHHHHHHHHHHHHH--------HHHHHCCSSSCCC
T ss_pred HHHHHHHHHhhch-hHHH------------------HHHH--HhhHHHHHHHHHHHHHH--------HHHHHhccccccC
Confidence 2222111000000 0000 0010 12344555655554310 00011111 13
Q ss_pred CCC--------HHHHHHHHHHHhcc----CcH----HHHHHHHHHHHHcCCCCCchhHHHHHHHHHHh-------cCCHH
Q 040394 427 SPD--------AVTLVSVISACASL----GAV----QVGSSLHAYSTKQGLLSSNVYVGTALLNFYAK-------CGDAQ 483 (691)
Q Consensus 427 ~p~--------~~~~~~ll~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~ 483 (691)
+|+ ...|...+...... ++. +.+..+|++..... |.++..|..++..+.+ .|+++
T Consensus 219 ~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~--p~~~~~w~~~~~~~~~~~~~~~~~g~~~ 296 (530)
T 2ooe_A 219 PPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMN 296 (530)
T ss_dssp CCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhchhhhhccchh
Confidence 443 23444444332221 222 46778899988876 7888999888888876 68877
Q ss_pred -------HHHHHHHhccc---C-CHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcccCCHHH
Q 040394 484 -------SARMVFDAMRE---K-NTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNE--VIFTTILSACSHTGMVGE 550 (691)
Q Consensus 484 -------~A~~~~~~~~~---~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~ 550 (691)
+|..+|++..+ | +...|..++..+.+.|++++|..+|+++.+. .|+. ..|..+...+.+.|++++
T Consensus 297 ~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~ 374 (530)
T 2ooe_A 297 NAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKS 374 (530)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHH
Confidence 89999998874 3 5788999999999999999999999999984 5653 478888888888999999
Q ss_pred HHHHHHHchhhcCCCCC-hhHHHHHHHH-HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040394 551 GWKCFYSMCRDFKFVPS-MKHYVCMVDL-LARAGRLEEALEFMENM-PIEP-DVSLFGAFLHGCGLYSRFDLGEVMIKKM 626 (691)
Q Consensus 551 A~~~~~~m~~~~~~~p~-~~~~~~li~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 626 (691)
|.++|++..+ ..|+ ...|...+.. +...|+.++|.++|++. ...| +...|..++..+.+.|+.++|..+|+++
T Consensus 375 A~~~~~~Al~---~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~a 451 (530)
T 2ooe_A 375 GRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERV 451 (530)
T ss_dssp HHHHHHHHHT---CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHh---ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHH
Confidence 9999998753 3443 3333332222 33689999999999987 3334 5788999999999999999999999999
Q ss_pred HhcCCCCch----hHHHHHHHHHhCCCcHHHHHHHHHHHhCC
Q 040394 627 LELHPDKAC----YYVLVSNLYASDGRWIRVNQVRELMKQRG 664 (691)
Q Consensus 627 ~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 664 (691)
+...|.++. .|...+......|+.+.+..+.+++.+.-
T Consensus 452 l~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 452 LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 998776554 77777888889999999999999988753
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=2.4e-16 Score=155.56 Aligned_cols=374 Identities=11% Similarity=0.070 Sum_probs=135.2
Q ss_pred hcCChHHHHHHHhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHH
Q 040394 192 KCRDIGSSRQVFDETLDKNVVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGY 271 (691)
Q Consensus 192 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 271 (691)
+.|++++|.+.++++..| .+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 344555555555555333 25555555555555555555555432 3445555555555555556555555544
Q ss_pred HHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCcHHHHH
Q 040394 272 ILKIGIEINSHLVTALLDMYVKCGNIRDARSVFDELCSIDLVSWTAMIVGYTQSGYPDKALKLFTDKKWADFFPNHVTIA 351 (691)
Q Consensus 272 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 351 (691)
..+. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|++++|..+|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 4442 23345555556666666666555555532 44455666666666666666666666544 2455
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHH
Q 040394 352 SVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAV 431 (691)
Q Consensus 352 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~ 431 (691)
.+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. +.|+.
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----------------~~ad~- 209 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----------------VHADE- 209 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----------------TCHHH-
T ss_pred HHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----------------hCHhh-
Confidence 5555566666666655555554 245555556666666666666644333322 12222
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhc--CCHHHHHHHHHhccc--------CCHhHHH
Q 040394 432 TLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKC--GDAQSARMVFDAMRE--------KNTVTWS 501 (691)
Q Consensus 432 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~--------~~~~~~~ 501 (691)
...++..|.+.|.+++|..+++...... +.....|+-+.-+|++- ++..+.++.|..-.. .+...|.
T Consensus 210 -l~~lv~~Yek~G~~eEai~lLe~aL~le--~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~ 286 (449)
T 1b89_A 210 -LEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWA 286 (449)
T ss_dssp -HHHHHHHHHHTTCHHHHHHHHHHHTTST--TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHH
T ss_pred -HHHHHHHHHHCCCHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3345556666666666666666665444 44555555555555543 344444444442221 2456788
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHh
Q 040394 502 AMIGGYGMQGDGGGSLALFSDMLNE-EVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLAR 580 (691)
Q Consensus 502 ~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 580 (691)
.++-.|.+.++++.|..+ |.+. ...-+...|..++.--....-+-+|..++- . -.| ...+-|+.++..
T Consensus 287 e~~~ly~~~~e~d~A~~t---m~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl---~---~~p--~~l~~ll~~l~~ 355 (449)
T 1b89_A 287 ELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL---E---FKP--LLLNDLLMVLSP 355 (449)
T ss_dssp HHHHHHHHTTCHHHHHHH---HHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH---H---HCG--GGHHHHHHHHGG
T ss_pred HHHHHHHhhchHHHHHHH---HHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH---h---cCH--HHHHHHHHHHHh
Confidence 888888888888877763 3432 111223333333322222222223333322 1 122 235555555555
Q ss_pred cCChHHHHHHHHhCCC-------------CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040394 581 AGRLEEALEFMENMPI-------------EPDVSLFGAFLHGCGLYSRFDLGEVMIK 624 (691)
Q Consensus 581 ~g~~~~A~~~~~~~~~-------------~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 624 (691)
.=+...+..+|++.+. ..+...-.++-..|....|++.-+...+
T Consensus 356 ~ld~~r~v~~~~~~~~l~l~~~yl~~v~~~n~~~vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 356 RLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp GCCHHHHHHHHHHTTCTTTTHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccCcHHHHHHHHHcCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 5566666666666532 2233344455555666677666544444
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=1e-16 Score=162.43 Aligned_cols=296 Identities=8% Similarity=-0.045 Sum_probs=159.7
Q ss_pred HhcCCChHHHHH-HhccCCC-----C--CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHcccCC
Q 040394 90 YGSFGHVKYARS-VFDSMPN-----P--DFYSFQVMIRWYFLNDLYKDIVEFYKCMRKRLKEHDNFVFSKVLKACCELRD 161 (691)
Q Consensus 90 ~~~~g~~~~A~~-~~~~~~~-----~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 161 (691)
+...|++++|.. .|++... | +...+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 334455666665 5554321 1 23445555666666666666666666665542 3344455555555666666
Q ss_pred hhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhccCC--C-ChhhHHHHHHHHHhCCChhHHHHHHHHHH
Q 040394 162 IDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDETLD--K-NVVSWTSMIAGYVQNDCAQEGLVLFNRMR 238 (691)
Q Consensus 162 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 238 (691)
+++|...++.+.+..+.+..++..+...|...|++++|...|+++.. | +...+..+... ..
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-------~~--------- 177 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG-------AG--------- 177 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-----------------------
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH-------hh---------
Confidence 66666666666655555555555555555555555555555554422 1 11111110000 00
Q ss_pred hCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhc---CCCChhH
Q 040394 239 EGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIGIEI-NSHLVTALLDMYVKCGNIRDARSVFDEL---CSIDLVS 314 (691)
Q Consensus 239 ~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~ 314 (691)
...+. ..+. .+..+...|++++|...++.+.+..... +..++..+...+.+.|++++|...|+++ .+.+..+
T Consensus 178 --~~~~~-~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 253 (368)
T 1fch_A 178 --GAGLG-PSKR-ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 253 (368)
T ss_dssp -----------C-TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred --hhccc-HHHH-HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHH
Confidence 00000 0000 1222235566666666666666553221 3556666666666777777777666665 2234556
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHhhHCCCCCcHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCc-----------hhH
Q 040394 315 WTAMIVGYTQSGYPDKALKLFTDKKWADFFPNHVTIASVLSASAQLGNLNMGRMVHSLGIRLGLED-----------YTV 383 (691)
Q Consensus 315 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~ 383 (691)
|..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|...++.+.+..+.+ ..+
T Consensus 254 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 332 (368)
T 1fch_A 254 WNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENI 332 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHH
Confidence 6667777777777777777777766542 2345566666667777777777777777766655443 677
Q ss_pred HHHHHHHhHhcCChHHHHHHHHhC
Q 040394 384 INALVDMYAKCHVIADARYIFETT 407 (691)
Q Consensus 384 ~~~l~~~~~~~g~~~~a~~~~~~~ 407 (691)
+..+..+|...|+.++|..++++.
T Consensus 333 ~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 333 WSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHHHhCChHhHHHhHHHH
Confidence 888888888889988888887743
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.75 E-value=3.5e-17 Score=165.85 Aligned_cols=226 Identities=9% Similarity=-0.036 Sum_probs=163.0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CHhHHHH----
Q 040394 430 AVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMREK---NTVTWSA---- 502 (691)
Q Consensus 430 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~---- 502 (691)
..++..+..++...|+++.|...++.+.+.. |.+...+..+...|...|++++|...++++.+. +...+..
T Consensus 98 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 175 (368)
T 1fch_A 98 MEAWQYLGTTQAENEQELLAISALRRCLELK--PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG 175 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-----
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 3444444455555555555555555555544 445555555555555555555555555554421 1111110
Q ss_pred -----------HHHHHhcCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hh
Q 040394 503 -----------MIGGYGMQGDGGGSLALFSDMLNEEVQP-NEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MK 569 (691)
Q Consensus 503 -----------li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~ 569 (691)
.+..+...|++++|+..++++.+..... +..++..+...+...|++++|...++++... .|+ ..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~ 252 (368)
T 1fch_A 176 AGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYL 252 (368)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHH
T ss_pred hhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHH
Confidence 1223337889999999999998853211 4778888888999999999999999987543 454 67
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------chh
Q 040394 570 HYVCMVDLLARAGRLEEALEFMENM-PIE-PDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDK-----------ACY 636 (691)
Q Consensus 570 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~~ 636 (691)
.+..+...+.+.|++++|++.++++ ... .+...+..+...+.+.|++++|...++++++..|++ ..+
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 332 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENI 332 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHH
Confidence 8899999999999999999999997 333 456789999999999999999999999999988887 789
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHH
Q 040394 637 YVLVSNLYASDGRWIRVNQVRELM 660 (691)
Q Consensus 637 ~~~l~~~~~~~g~~~~A~~~~~~~ 660 (691)
+..++.+|...|++++|..++++.
T Consensus 333 ~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 333 WSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHHHhCChHhHHHhHHHH
Confidence 999999999999999999887643
No 26
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.75 E-value=2.4e-14 Score=150.76 Aligned_cols=362 Identities=9% Similarity=0.006 Sum_probs=293.2
Q ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHhcC-CCChhHHHHHHHHHHh----cCCchhHHHHHH
Q 040394 266 KWLHGYILKIGIEINSHLVTALLDMYVK----CGNIRDARSVFDELC-SIDLVSWTAMIVGYTQ----SGYPDKALKLFT 336 (691)
Q Consensus 266 ~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~a~~~~~ 336 (691)
...+....+.| +...+..+...|.. .+++++|...|++.. ..+...+..|...|.. .+++++|.++|+
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 34444444433 66777778888887 899999999999873 3567788888899998 899999999999
Q ss_pred HhhHCCCCCcHHHHHHHHHHHhc----CCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHh----cCChHHHHHHHHhCC
Q 040394 337 DKKWADFFPNHVTIASVLSASAQ----LGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAK----CHVIADARYIFETTS 408 (691)
Q Consensus 337 ~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~ 408 (691)
+..+.| +...+..+-..+.. .+++++|...++...+.+ ++..+..+...|.. .++.++|...|++..
T Consensus 104 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~ 178 (490)
T 2xm6_A 104 KAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG--RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAA 178 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 998875 55566667777776 789999999999998876 56667778888887 889999999999876
Q ss_pred CCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHh----cC
Q 040394 409 EKDVIAWNSIISGLDDNVSPDAVTLVSVISACAS----LGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAK----CG 480 (691)
Q Consensus 409 ~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 480 (691)
+. .+...+..+...+.. .++.++|...+++..+.+ ++..+..+...|.. .+
T Consensus 179 ~~-----------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~g~~~ 237 (490)
T 2xm6_A 179 EQ-----------------GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG----DELGQLHLADMYYFGIGVTQ 237 (490)
T ss_dssp HT-----------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCC
T ss_pred HC-----------------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCC
Confidence 54 356677777777777 899999999999998866 35667778888876 88
Q ss_pred CHHHHHHHHHhccc-CCHhHHHHHHHHHhc----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccc-----CCHHH
Q 040394 481 DAQSARMVFDAMRE-KNTVTWSAMIGGYGM----QGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHT-----GMVGE 550 (691)
Q Consensus 481 ~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----g~~~~ 550 (691)
++++|..+|++..+ .+...+..+...|.. .++.++|+..|++..+.| +...+..+-..+... +++++
T Consensus 238 ~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~ 314 (490)
T 2xm6_A 238 DYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQ 314 (490)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHH
Confidence 99999999998775 466777788888877 899999999999998765 445556666666665 89999
Q ss_pred HHHHHHHchhhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHH
Q 040394 551 GWKCFYSMCRDFKFVPSMKHYVCMVDLLARAG---RLEEALEFMENMPIEPDVSLFGAFLHGCGL----YSRFDLGEVMI 623 (691)
Q Consensus 551 A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~ 623 (691)
|...+++..+. -+...+..+...|.+.| +.++|++++++.-...+...+..|...|.. .+++++|...+
T Consensus 315 A~~~~~~a~~~----~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 390 (490)
T 2xm6_A 315 AISWYTKSAEQ----GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWM 390 (490)
T ss_dssp HHHHHHHHHHT----TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHhc----CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99999988433 24567777888888766 789999999998323577888899999988 89999999999
Q ss_pred HHHHhcCCCCchhHHHHHHHHHh----CCCcHHHHHHHHHHHhCCC
Q 040394 624 KKMLELHPDKACYYVLVSNLYAS----DGRWIRVNQVRELMKQRGL 665 (691)
Q Consensus 624 ~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~ 665 (691)
+++.+.. ++..+..|+.+|.. .+++++|.+.+++..+.|.
T Consensus 391 ~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 391 RKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 9998864 57889999999998 8999999999999998774
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=8.6e-16 Score=148.91 Aligned_cols=245 Identities=8% Similarity=-0.009 Sum_probs=193.8
Q ss_pred HHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC
Q 040394 385 NALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSS 464 (691)
Q Consensus 385 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 464 (691)
..+.++|...|+++.|...++.. -+|+..++..+...+...++.+.|.+.++.+...+..|.
T Consensus 38 ~~l~r~yi~~g~~~~al~~~~~~------------------~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~ 99 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEIKPS------------------SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVT 99 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCTT------------------SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCS
T ss_pred HHHHHHHHHCCCHHHHHHHhccc------------------CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCC
Confidence 45667788888888888766542 246777888888899999999999999999988763266
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHH---HHHHH
Q 040394 465 NVYVGTALLNFYAKCGDAQSARMVFDAMREKNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFT---TILSA 541 (691)
Q Consensus 465 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~---~ll~~ 541 (691)
+...+..+...+...|++++|++.+++ ..+...+..++..+.+.|++++|.+.++++.+. .|+....+ ..+..
T Consensus 100 ~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l 175 (291)
T 3mkr_A 100 NTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVSL 175 (291)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHH
Confidence 777888888999999999999999998 457889999999999999999999999999986 46543221 23344
Q ss_pred hcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH-
Q 040394 542 CSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENM-PIEP-DVSLFGAFLHGCGLYSRFDL- 618 (691)
Q Consensus 542 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~- 618 (691)
+...|++++|..+|+++... .+.+...++.+..++.+.|++++|.+.+++. ...| +..++..++..+...|+.++
T Consensus 176 ~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~ea 253 (291)
T 3mkr_A 176 AAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEV 253 (291)
T ss_dssp HHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHH
T ss_pred HhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHH
Confidence 44568999999999999665 3445788999999999999999999999997 4344 56788889988989998875
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHH
Q 040394 619 GEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVR 657 (691)
Q Consensus 619 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 657 (691)
+..+++++++.+|+++.+.. ...+.+.++++..-|
T Consensus 254 a~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 254 TNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHHc
Confidence 67899999999999876654 345566666665444
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=9.8e-16 Score=160.98 Aligned_cols=378 Identities=12% Similarity=-0.045 Sum_probs=214.3
Q ss_pred ChhhHHHHHHHHHccCChhhHHHHHHHHHHH-----C--CCC-chHHHHHHHHHHHhcCCHHHHHHHHHhc-------CC
Q 040394 245 NQITLGSLVTACAKLRALHQGKWLHGYILKI-----G--IEI-NSHLVTALLDMYVKCGNIRDARSVFDEL-------CS 309 (691)
Q Consensus 245 ~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~-----g--~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~ 309 (691)
....|+.+-..+...|+.++|.+.|++..+. + ..| ...+|+.+..+|...|++++|...+++. ..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3556777777788888888888888776542 1 122 2456777777788888888877777654 11
Q ss_pred ----CChhHHHHHHHHHHh--cCCchhHHHHHHHhhHCCCCCcH-HHHHHHHHH---HhcCCChhhHHHHHHHHHHhCCC
Q 040394 310 ----IDLVSWTAMIVGYTQ--SGYPDKALKLFTDKKWADFFPNH-VTIASVLSA---SAQLGNLNMGRMVHSLGIRLGLE 379 (691)
Q Consensus 310 ----~~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~ 379 (691)
....++..+..++.. .+++++|++.|++.... .|+. ..+..+..+ +...++.++|...++...+..+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 122345444444443 34567777777776654 3432 223222222 34456666777777777776666
Q ss_pred chhHHHHHHHHhHhc----CChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 040394 380 DYTVINALVDMYAKC----HVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLHAY 455 (691)
Q Consensus 380 ~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 455 (691)
+..++..+...+... |+.++|...+++.... .+.+..++..+...+...|+.+.|...+++
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~---------------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 272 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK---------------APGVTDVLRSAAKFYRRKDEPDKAIELLKK 272 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHH---------------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh---------------CccHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 666665555555443 3445566666655432 233445556666666666666666666666
Q ss_pred HHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHH
Q 040394 456 STKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMREKNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIF 535 (691)
Q Consensus 456 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 535 (691)
..+.. |.+..++..+...|...+....+. ... .........+..+.|...+++..+.. +.+..++
T Consensus 273 al~~~--p~~~~~~~~lg~~y~~~~~~~~~~------~~~------~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 337 (472)
T 4g1t_A 273 ALEYI--PNNAYLHCQIGCCYRAKVFQVMNL------REN------GMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVC 337 (472)
T ss_dssp HHHHS--TTCHHHHHHHHHHHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCH
T ss_pred HHHhC--CChHHHHHHHHHHHHHHHHHhhhH------HHH------HHHHHHHHHhhHHHHHHHHHHHhhcC-Cchhhhh
Confidence 66655 455555555554443221110000 000 00000011123566777777777642 2334556
Q ss_pred HHHHHHhcccCCHHHHHHHHHHchhhcCCCCChh----HHHHHHHH-HHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 040394 536 TTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMK----HYVCMVDL-LARAGRLEEALEFMENM-PIEPDVSLFGAFLHG 609 (691)
Q Consensus 536 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~----~~~~li~~-~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~ 609 (691)
..+...+...|++++|.+.|++... ..|+.. .+..+... +...|+.++|++.+++. .+.|+......
T Consensus 338 ~~lg~~~~~~~~~~~A~~~~~kaL~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---- 410 (472)
T 4g1t_A 338 SILASLHALADQYEEAEYYFQKEFS---KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---- 410 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH----
T ss_pred hhHHHHHHHhccHHHHHHHHHHHHh---cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH----
Confidence 6777788888899999988887643 233322 22333332 34678899999888886 56666543322
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCCCc
Q 040394 610 CGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRGLS 666 (691)
Q Consensus 610 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 666 (691)
....+..++++.++.+|+++.++..++.+|...|++++|++.+++.++.|..
T Consensus 411 -----~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 411 -----MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp -----HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred -----HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 2345667788888999999999999999999999999999999999987653
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=8e-17 Score=163.02 Aligned_cols=259 Identities=12% Similarity=-0.030 Sum_probs=196.2
Q ss_pred hhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 040394 381 YTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQG 460 (691)
Q Consensus 381 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 460 (691)
...+..+...+.+.|++++|...|+++.+. .+.+..++..+...+...|+++.|...++++.+..
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 129 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQ---------------DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ 129 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 334566666777777777777777766543 23355667777777777777777777777777776
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCC-------------HhHHHHHHHHHhcCCChHHHHHHHHHHHHCC
Q 040394 461 LLSSNVYVGTALLNFYAKCGDAQSARMVFDAMREKN-------------TVTWSAMIGGYGMQGDGGGSLALFSDMLNEE 527 (691)
Q Consensus 461 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 527 (691)
|.+...+..+...|...|++++|...|+++.+.+ ...+..+...+...|++++|+..++++.+..
T Consensus 130 --p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 207 (365)
T 4eqf_A 130 --PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN 207 (365)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS
T ss_pred --CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC
Confidence 6677788888888888888888888888776421 2233445788899999999999999999863
Q ss_pred CC-CCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHH
Q 040394 528 VQ-PNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEFMENM-PIEP-DVSLF 603 (691)
Q Consensus 528 ~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 603 (691)
.. ++..++..+...+...|++++|.+.+++..+. .|+ ..++..+..+|.+.|++++|++.++++ ...| +..++
T Consensus 208 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 284 (365)
T 4eqf_A 208 GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSR 284 (365)
T ss_dssp CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHH
Confidence 21 15788888889999999999999999988544 444 778999999999999999999999998 4344 47789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC------------CchhHHHHHHHHHhCCCcHHHHHHHHH
Q 040394 604 GAFLHGCGLYSRFDLGEVMIKKMLELHPD------------KACYYVLVSNLYASDGRWIRVNQVREL 659 (691)
Q Consensus 604 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 659 (691)
..+...|...|++++|...++++++..|+ +...+..++.++...|+.+.+.+..++
T Consensus 285 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 285 YNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999999999999999999998776 367889999999999999988877644
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.72 E-value=3.2e-16 Score=158.57 Aligned_cols=232 Identities=10% Similarity=-0.010 Sum_probs=197.7
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHhHHHHHHH
Q 040394 429 DAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE---KNTVTWSAMIG 505 (691)
Q Consensus 429 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 505 (691)
+...+..+...+.+.|+++.|...++.+.+.. |.+...+..+...|.+.|++++|...|+++.+ .+..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 45568888899999999999999999999988 78899999999999999999999999998874 36789999999
Q ss_pred HHhcCCChHHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHH
Q 040394 506 GYGMQGDGGGSLALFSDMLNEEVQPNE-----------VIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCM 574 (691)
Q Consensus 506 ~~~~~~~~~~A~~~~~~m~~~g~~p~~-----------~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l 574 (691)
.|...|++++|+..++++.+. .|+. ..+..+...+...|++++|.+.++++.+...-.++...+..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 999999999999999999884 3442 223344678889999999999999986653332357889999
Q ss_pred HHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHH
Q 040394 575 VDLLARAGRLEEALEFMENM-P-IEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIR 652 (691)
Q Consensus 575 i~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 652 (691)
...|.+.|++++|++.++++ . .+.+..+|..+..++...|++++|+..++++++..|+++.++..++.+|...|++++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999998 3 344678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 040394 653 VNQVRELMKQRG 664 (691)
Q Consensus 653 A~~~~~~~~~~g 664 (691)
|.+.++++++..
T Consensus 300 A~~~~~~al~~~ 311 (365)
T 4eqf_A 300 AVSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 999999998743
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.70 E-value=2e-15 Score=146.33 Aligned_cols=247 Identities=12% Similarity=0.028 Sum_probs=204.5
Q ss_pred HHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCc
Q 040394 388 VDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDA--VTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSN 465 (691)
Q Consensus 388 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 465 (691)
++-....|+++.|+..++..... .|+. .....+.+++...|+++.|...++. .. +|+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~----------------~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~--~~~ 64 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS----------------SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SS--APE 64 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC----------------SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TS--CHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccC----------------CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cC--Chh
Confidence 34456789999999999887654 3443 3456678899999999999986654 22 678
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccc----C-CHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040394 466 VYVGTALLNFYAKCGDAQSARMVFDAMRE----K-NTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILS 540 (691)
Q Consensus 466 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 540 (691)
...+..+...+...++.++|.+.++++.. | +...+..+...+...|++++|++.+++ +.+...+..+..
T Consensus 65 ~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~ 138 (291)
T 3mkr_A 65 LQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQ 138 (291)
T ss_dssp HHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHH
Confidence 88889999999999999999999998752 4 566778888999999999999999987 567788888999
Q ss_pred HhcccCCHHHHHHHHHHchhhcCCCCChhHH---HHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCC
Q 040394 541 ACSHTGMVGEGWKCFYSMCRDFKFVPSMKHY---VCMVDLLARAGRLEEALEFMENM--PIEPDVSLFGAFLHGCGLYSR 615 (691)
Q Consensus 541 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~ 615 (691)
.+.+.|++++|.+.++++.+. .|+.... ..++..+...|++++|.++|+++ ..+.+...++.+..++.+.|+
T Consensus 139 ~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 215 (291)
T 3mkr_A 139 ILLKLDRLDLARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGR 215 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHCCCHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Confidence 999999999999999998544 4663221 23445555669999999999998 345678899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHH-HHHHHHHHHhCC
Q 040394 616 FDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIR-VNQVRELMKQRG 664 (691)
Q Consensus 616 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~g 664 (691)
+++|+..++++++.+|+++.++..++.++...|++++ +.++++++++..
T Consensus 216 ~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 216 WEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999986 578888888754
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.70 E-value=5.3e-16 Score=154.20 Aligned_cols=261 Identities=12% Similarity=-0.012 Sum_probs=217.9
Q ss_pred chhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 040394 380 DYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQ 459 (691)
Q Consensus 380 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 459 (691)
+...+..+...+...|++++|..+|+++.+. .+.+..++..+...+...|+++.|...++.+.+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 84 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQA---------------APEREEAWRSLGLTQAENEKDGLAIIALNHARML 84 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3445567778888999999999999987653 2346678888899999999999999999999998
Q ss_pred CCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CHhHHHHH--------------HH-HHhcCCChHHHHHHHH
Q 040394 460 GLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMREK---NTVTWSAM--------------IG-GYGMQGDGGGSLALFS 521 (691)
Q Consensus 460 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l--------------i~-~~~~~~~~~~A~~~~~ 521 (691)
. |.+...+..+...|...|++++|...++++.+. +...+..+ .. .+...|++++|...++
T Consensus 85 ~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 162 (327)
T 3cv0_A 85 D--PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLH 162 (327)
T ss_dssp C--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHH
T ss_pred C--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHH
Confidence 7 778899999999999999999999999988752 22233333 22 3778899999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CC
Q 040394 522 DMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEFMENM-PI-EP 598 (691)
Q Consensus 522 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p 598 (691)
++.+.. +.+...+..+...+...|++++|.+.++++.+. .|+ ...+..+...+...|++++|.+.++++ .. +.
T Consensus 163 ~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 238 (327)
T 3cv0_A 163 AALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG 238 (327)
T ss_dssp HHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 999863 446788888889999999999999999988544 444 778899999999999999999999997 33 34
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------------CchhHHHHHHHHHhCCCcHHHHHHHHHHH
Q 040394 599 DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPD------------KACYYVLVSNLYASDGRWIRVNQVRELMK 661 (691)
Q Consensus 599 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 661 (691)
+..++..+...+...|++++|...++++.+..|+ ++..+..++.++...|++++|.+++++.+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 239 YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5778999999999999999999999999999999 78899999999999999999999886543
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.70 E-value=1.4e-17 Score=177.21 Aligned_cols=148 Identities=6% Similarity=0.066 Sum_probs=121.4
Q ss_pred ChhHHHHHHHHhHhcCChHHHHHHHhcc-------CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHH
Q 040394 179 DSFVLTGLVDMYAKCRDIGSSRQVFDET-------LDKNVVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGS 251 (691)
Q Consensus 179 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 251 (691)
-..+|++||++||+.|++++|.++|++| ..||+++||+||.+||+.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 4458999999999999999999999665 468999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCh-hhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhHHHHHHHHHHhc
Q 040394 252 LVTACAKLRAL-HQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNIRDARSVFDELCS-----IDLVSWTAMIVGYTQS 325 (691)
Q Consensus 252 li~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~ 325 (691)
+|.++|+.|+. ++|.++|++|.+.|+.||..+|+.++....+.+-++...++...+.. +.+.+.+.|...|.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d 285 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccC
Confidence 99999999985 78999999999999999999999999887776555554444433311 1123444455555554
Q ss_pred C
Q 040394 326 G 326 (691)
Q Consensus 326 g 326 (691)
+
T Consensus 286 ~ 286 (1134)
T 3spa_A 286 G 286 (1134)
T ss_dssp S
T ss_pred C
Confidence 4
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.69 E-value=9.3e-15 Score=153.52 Aligned_cols=387 Identities=9% Similarity=-0.026 Sum_probs=240.6
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHhC-----C--CCC-ChhhHHHHHHHHHccCChhhHHHHHHHHHHHC---C-
Q 040394 210 NVVSWTSMIAGYVQNDCAQEGLVLFNRMREG-----F--VEG-NQITLGSLVTACAKLRALHQGKWLHGYILKIG---I- 277 (691)
Q Consensus 210 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~--~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g---~- 277 (691)
....||.|...+...|++++|++.|++..+- + ..| ...+|+.+..++...|++++|...++...+.. .
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4567999999999999999999999987541 1 122 35689999999999999999999999886631 1
Q ss_pred --CC-chHHHHHHHHHHHhc--CCHHHHHHHHHhc---CCCChhHHHHHHHH---HHhcCCchhHHHHHHHhhHCCCCCc
Q 040394 278 --EI-NSHLVTALLDMYVKC--GNIRDARSVFDEL---CSIDLVSWTAMIVG---YTQSGYPDKALKLFTDKKWADFFPN 346 (691)
Q Consensus 278 --~~-~~~~~~~li~~~~~~--g~~~~A~~~~~~~---~~~~~~~~~~li~~---~~~~g~~~~a~~~~~~m~~~g~~p~ 346 (691)
.+ ...++..+..++.+. +++++|.+.|++. .+.+...+..+... +...++.++|++.+++..+.. +.+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 11 245666665556554 4699999999987 23345555555544 445688899999999887753 223
Q ss_pred HHHHHHHHHHHh----cCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhh
Q 040394 347 HVTIASVLSASA----QLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGL 422 (691)
Q Consensus 347 ~~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~ 422 (691)
...+..+...+. ..++.++|...++......+....++..+...|...|++++|...+++..+.
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------------ 276 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY------------ 276 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh------------
Confidence 444544443433 4577899999999999999999999999999999999999999999987653
Q ss_pred hCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHhH
Q 040394 423 DDNVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE---KNTVT 499 (691)
Q Consensus 423 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~ 499 (691)
.+-+..++..+..++...+.... ... .. .........+..+.|...++...+ .+..+
T Consensus 277 ---~p~~~~~~~~lg~~y~~~~~~~~---------~~~--~~------~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 336 (472)
T 4g1t_A 277 ---IPNNAYLHCQIGCCYRAKVFQVM---------NLR--EN------GMYGKRKLLELIGHAVAHLKKADEANDNLFRV 336 (472)
T ss_dssp ---STTCHHHHHHHHHHHHHHHHHHH---------HC--------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCC
T ss_pred ---CCChHHHHHHHHHHHHHHHHHhh---------hHH--HH------HHHHHHHHHhhHHHHHHHHHHHhhcCCchhhh
Confidence 22344556666555432211110 000 00 001111122345677777776653 35567
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHH
Q 040394 500 WSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEV--IFTTILS-ACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVD 576 (691)
Q Consensus 500 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~-~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 576 (691)
+..+...|...|++++|+..|++..+....|... .+..+.. .....|++++|+..|++.. .+.|+.......+
T Consensus 337 ~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal---~i~~~~~~~~~~~- 412 (472)
T 4g1t_A 337 CSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV---KINQKSREKEKMK- 412 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH---HSCCCCHHHHHHH-
T ss_pred hhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCcccHHHHHHH-
Confidence 8888899999999999999999988854333221 2222222 3356789999999998664 3566643322222
Q ss_pred HHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 040394 577 LLARAGRLEEALEFMENM-P-IEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVS 641 (691)
Q Consensus 577 ~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 641 (691)
..+.+++++. . .+.+..+|..+...+...|++++|++.|+++++..|.+|.....+|
T Consensus 413 --------~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 413 --------DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp --------HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred --------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 2233344433 2 3445678999999999999999999999999999998887766554
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.67 E-value=1.7e-14 Score=143.26 Aligned_cols=275 Identities=8% Similarity=-0.036 Sum_probs=174.8
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHH
Q 040394 110 DFYSFQVMIRWYFLNDLYKDIVEFYKCMRKRLKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDM 189 (691)
Q Consensus 110 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 189 (691)
+...|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|...++.+.+..+.+..++..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 34456667777777777777777777777653 33555666666777777777777777777777665566666666666
Q ss_pred hHhcCChHHHHHHHhccCC--C-ChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHH--HHHccCChhh
Q 040394 190 YAKCRDIGSSRQVFDETLD--K-NVVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVT--ACAKLRALHQ 264 (691)
Q Consensus 190 ~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~--~~~~~~~~~~ 264 (691)
+...|++++|.+.+++..+ | +...+..++.. .|+......+.. .+...|++++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC------------------------------------------CCTTSHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHH
Confidence 6666666666666665422 1 22222222000 000011111102 2455566666
Q ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhc---CCCChhHHHHHHHHHHhcCCchhHHHHHHHhhHC
Q 040394 265 GKWLHGYILKIGIEINSHLVTALLDMYVKCGNIRDARSVFDEL---CSIDLVSWTAMIVGYTQSGYPDKALKLFTDKKWA 341 (691)
Q Consensus 265 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 341 (691)
|...++.+.+... .+..++..+...+.+.|++++|.+.++++ .+.+..+|..+...+...|++++|.+.+++....
T Consensus 157 A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 157 CRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6666666666542 25566666777777777777777777665 2334566777777777777777777777776664
Q ss_pred CCCCcHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCC------------chhHHHHHHHHhHhcCChHHHHHHHHhCCC
Q 040394 342 DFFPNHVTIASVLSASAQLGNLNMGRMVHSLGIRLGLE------------DYTVINALVDMYAKCHVIADARYIFETTSE 409 (691)
Q Consensus 342 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 409 (691)
. +.+..++..+...+...|++++|...++.+.+..+. ...++..+..++.+.|+.++|..++++..+
T Consensus 236 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 236 N-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred C-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 2 234566667777777778888887777777776666 677888899999999999999999887653
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.64 E-value=1.8e-16 Score=168.77 Aligned_cols=161 Identities=11% Similarity=0.073 Sum_probs=122.5
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcc-------cCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHH
Q 040394 463 SSNVYVGTALLNFYAKCGDAQSARMVFDAMR-------EKNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIF 535 (691)
Q Consensus 463 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 535 (691)
.....+|+++|++|++.|++++|.++|++|. .||++|||+||.+||+.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3445678888888888888888888887764 479999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCC-HHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCC------HHHHHHH
Q 040394 536 TTILSACSHTGM-VGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENM--PIEPD------VSLFGAF 606 (691)
Q Consensus 536 ~~ll~~~~~~g~-~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~------~~~~~~l 606 (691)
+++|.++++.|+ .++|.++|++| ...|+.||..+|++++....+. .+++.++++ ++.|+ ..+...|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM-~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQM-SQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVKPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHH-HHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGCCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHH-HHcCCCCChhhcccccChhhHH----HHHHHHHHhCcccCCCCCCcccccchHHH
Confidence 999999999887 47888999999 5559999999999888766665 444444444 22322 3344555
Q ss_pred HHHHHhcC---------CHHHHHHHHHHHHh
Q 040394 607 LHGCGLYS---------RFDLGEVMIKKMLE 628 (691)
Q Consensus 607 ~~~~~~~g---------~~~~A~~~~~~~~~ 628 (691)
...|.+.+ ..++-..++++-++
T Consensus 279 ~dl~s~d~~~s~pk~~~~~~~L~~~~~~Ql~ 309 (1134)
T 3spa_A 279 RDVYAKDGRVSYPKLHLPLKTLQCLFEKQLH 309 (1134)
T ss_dssp HHHHCCCSCCCCCCCSSCHHHHHHHHHHHHH
T ss_pred HHHHccCCCCcCccccCCHHHHHHHHHHHHH
Confidence 56665544 24566666666553
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.61 E-value=2.9e-14 Score=131.85 Aligned_cols=195 Identities=12% Similarity=0.007 Sum_probs=143.2
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040394 463 SSNVYVGTALLNFYAKCGDAQSARMVFDAMRE---KNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTIL 539 (691)
Q Consensus 463 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 539 (691)
|+++..+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 55666667777777777777777777776654 255677777777777777778887777777742 22445666666
Q ss_pred HHhccc-----------CCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHH
Q 040394 540 SACSHT-----------GMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEFMENM-PIEPDVSLFGAF 606 (691)
Q Consensus 540 ~~~~~~-----------g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 606 (691)
.++... |++++|...+++..+ +.|+ ...+..+..+|...|++++|++.+++. ....+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 677777 999999999997753 4665 678888999999999999999999997 212778899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHH
Q 040394 607 LHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMK 661 (691)
Q Consensus 607 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 661 (691)
..++...|++++|+..++++++..|+++..+..++.++...|++++|++.+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999997754
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.60 E-value=9.8e-14 Score=132.44 Aligned_cols=220 Identities=9% Similarity=-0.006 Sum_probs=192.3
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-C-------HhH
Q 040394 430 AVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE--K-N-------TVT 499 (691)
Q Consensus 430 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~-------~~~ 499 (691)
...+..+...+...|+++.|...++...+.. .+...+..+...|...|++++|...+++..+ | + ...
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 3567788889999999999999999999876 5678889999999999999999999998774 2 2 578
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHH
Q 040394 500 WSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLL 578 (691)
Q Consensus 500 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~ 578 (691)
|..+...+...|++++|+..+++..+. .|+.. .+...|++++|...++.+.. ..|+ ...+..+...+
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~-------~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~ 149 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTE--HRTAD-------ILTKLRNAEKELKKAEAEAY---VNPEKAEEARLEGKEY 149 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHH-------HHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc--CchhH-------HHHHHhHHHHHHHHHHHHHH---cCcchHHHHHHHHHHH
Confidence 899999999999999999999999984 56643 34566889999999998743 4555 67888899999
Q ss_pred HhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHH
Q 040394 579 ARAGRLEEALEFMENM-P-IEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQV 656 (691)
Q Consensus 579 ~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 656 (691)
...|++++|++.+++. . .+.+..++..+...+...|++++|...++++++..|+++..+..++.++...|++++|.+.
T Consensus 150 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 150 FTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999998 3 3446788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCC
Q 040394 657 RELMKQRG 664 (691)
Q Consensus 657 ~~~~~~~g 664 (691)
+++..+..
T Consensus 230 ~~~a~~~~ 237 (258)
T 3uq3_A 230 LDAARTKD 237 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 99988754
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.55 E-value=9.9e-13 Score=136.15 Aligned_cols=372 Identities=9% Similarity=-0.036 Sum_probs=227.8
Q ss_pred HHHHccCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCH---HHHHHHHHhcCCCChhHHHHHHHHHHhcC----
Q 040394 254 TACAKLRALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNI---RDARSVFDELCSIDLVSWTAMIVGYTQSG---- 326 (691)
Q Consensus 254 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g---- 326 (691)
..+.+.|++++|..+|+...+.|. ...+..|...|...|+. ++|.+.|++..+.+...+..|...+...+
T Consensus 11 ~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 11 NEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC--CCH
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC
Confidence 334455556666666666555542 22233344444555555 67777777665445555666655444444
Q ss_pred -CchhHHHHHHHhhHCCCCCcHHHHHHHHHHHhcCCChhhH---HHHHHHHHHhCCCchhHHHHHHHHhHhcCC----hH
Q 040394 327 -YPDKALKLFTDKKWADFFPNHVTIASVLSASAQLGNLNMG---RMVHSLGIRLGLEDYTVINALVDMYAKCHV----IA 398 (691)
Q Consensus 327 -~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a---~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~ 398 (691)
++++|+..|++..+.|... .+..+...|...+..+.+ ...+......| ++.....+...|...+. .+
T Consensus 88 ~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g--~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG--YPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT--CTTHHHHHHHHHHHHTCGGGGHH
T ss_pred cCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCcccCHH
Confidence 5667777777777665433 333444444444443333 33333333333 34555667777777764 44
Q ss_pred HHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHHcCCCCCchhHHHHHHHH
Q 040394 399 DARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLG---AVQVGSSLHAYSTKQGLLSSNVYVGTALLNF 475 (691)
Q Consensus 399 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 475 (691)
.+..+++..... .|+ .+..+...+...| +.++|...|+...+.| ++....+..+...
T Consensus 163 ~a~~~~~~a~~~----------------~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g--~~~a~~~~~Lg~~ 222 (452)
T 3e4b_A 163 DVERICKAALNT----------------TDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRG--TVTAQRVDSVARV 222 (452)
T ss_dssp HHHHHHHHHTTT----------------CTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcC----------------CHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC--CHHHHHHHHHHHH
Confidence 455555555432 233 7777778888888 9999999999999998 6777766677777
Q ss_pred HHhc----CCHHHHHHHHHhcccCCHhHHHHHHHH-H--hcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC--
Q 040394 476 YAKC----GDAQSARMVFDAMREKNTVTWSAMIGG-Y--GMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTG-- 546 (691)
Q Consensus 476 ~~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-- 546 (691)
|... +++++|..+|+.....+...+..|... + ...+++++|+..|++..+.| +...+..+-..|. .|
T Consensus 223 y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g 298 (452)
T 3e4b_A 223 LGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKW 298 (452)
T ss_dssp HTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSS
T ss_pred HhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCC
Confidence 7665 799999999999883367778888777 4 56899999999999999877 5555555555555 44
Q ss_pred ---CHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCC
Q 040394 547 ---MVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLAR----AGRLEEALEFMENMPIEPDVSLFGAFLHGCGL----YSR 615 (691)
Q Consensus 547 ---~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~ 615 (691)
++++|.+.|++.. .-+...+..|...|.. ..++++|.++|++.-..-+......|...|.. ..|
T Consensus 299 ~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d 373 (452)
T 3e4b_A 299 VPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPD 373 (452)
T ss_dssp SCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCC
T ss_pred CCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCC
Confidence 9999999999662 3446777778877776 34999999999998323345556667777764 469
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHh
Q 040394 616 FDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQ 662 (691)
Q Consensus 616 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 662 (691)
.++|..+++++.+..+................++..+|.+..++..+
T Consensus 374 ~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 374 PLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 99999999999887665433332222222334577778888777655
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.54 E-value=2.4e-13 Score=131.16 Aligned_cols=247 Identities=9% Similarity=-0.092 Sum_probs=196.2
Q ss_pred HhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHH
Q 040394 390 MYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVG 469 (691)
Q Consensus 390 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 469 (691)
.+...|++++|...|+++.+.... .-+.+..++..+...+...|++++|...++.+.+.. |.+...+
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~ 80 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRAL-----------TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVF 80 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCC-----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHH
T ss_pred ccCccchHHHHHHHHHHHHhcccc-----------cCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHH
Confidence 344567888999999887654100 011245678888999999999999999999999987 7889999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccc---CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC
Q 040394 470 TALLNFYAKCGDAQSARMVFDAMRE---KNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTG 546 (691)
Q Consensus 470 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 546 (691)
..+...|...|++++|...|++..+ .+...|..+...|...|++++|...++++.+. .|+.......+..+...|
T Consensus 81 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~ 158 (275)
T 1xnf_A 81 NYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKL 158 (275)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhc
Confidence 9999999999999999999998875 36789999999999999999999999999984 566655555566667789
Q ss_pred CHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHH
Q 040394 547 MVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENM-PIEPD-----VSLFGAFLHGCGLYSRFDLGE 620 (691)
Q Consensus 547 ~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~ 620 (691)
++++|...++..... .+++...+ .++..+...++.++|++.+++. ...|+ ...+..+...+...|++++|.
T Consensus 159 ~~~~A~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 235 (275)
T 1xnf_A 159 DEKQAKEVLKQHFEK--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSAT 235 (275)
T ss_dssp CHHHHHHHHHHHHHH--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHhc--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHH
Confidence 999999999877554 23334444 4777788888999999999887 33332 468888999999999999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHH
Q 040394 621 VMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVR 657 (691)
Q Consensus 621 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 657 (691)
..++++++..|++...+ +.++...|++++|++.+
T Consensus 236 ~~~~~al~~~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 236 ALFKLAVANNVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHTTCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred HHHHHHHhCCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 99999999999875544 56678889999988776
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.53 E-value=2.4e-13 Score=129.65 Aligned_cols=234 Identities=12% Similarity=-0.027 Sum_probs=193.8
Q ss_pred hhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 040394 381 YTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQG 460 (691)
Q Consensus 381 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 460 (691)
...+..+...+...|++++|...|++..+. . .+..++..+..++...|+++.|...++...+..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~--------------~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 68 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWEL--------------H--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQG 68 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------S--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------------h--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence 345677888888999999999999887654 3 677889999999999999999999999988765
Q ss_pred CCCCc-------hhHHHHHHHHHHhcCCHHHHHHHHHhccc--CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCC
Q 040394 461 LLSSN-------VYVGTALLNFYAKCGDAQSARMVFDAMRE--KNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPN 531 (691)
Q Consensus 461 ~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 531 (691)
+.+ ...+..+...|...|++++|...|++..+ ++. ..+...|++++|...++++... .|+
T Consensus 69 --~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~ 137 (258)
T 3uq3_A 69 --REMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYV--NPE 137 (258)
T ss_dssp --HHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHH
T ss_pred --cccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHc--Ccc
Confidence 222 68889999999999999999999998875 442 3466678899999999999985 444
Q ss_pred -HHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHH
Q 040394 532 -EVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENM-PI-EPDVSLFGAFLH 608 (691)
Q Consensus 532 -~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~ 608 (691)
...+..+...+...|++++|...+++..... +.+...+..+...+.+.|++++|++.+++. .. +.+...|..+..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~ 215 (258)
T 3uq3_A 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 215 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 4567777889999999999999999886542 234778999999999999999999999998 33 345778999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcC------CCCchhHHHHHHH
Q 040394 609 GCGLYSRFDLGEVMIKKMLELH------PDKACYYVLVSNL 643 (691)
Q Consensus 609 ~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~ 643 (691)
.+...|++++|...++++++.. |++...+..+..+
T Consensus 216 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 216 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 9999999999999999999988 8877777666543
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.53 E-value=4.4e-12 Score=131.27 Aligned_cols=245 Identities=11% Similarity=0.044 Sum_probs=126.7
Q ss_pred HHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCCh---HHHHHHHhccCCCChhhHHHHHHHHHhCC---
Q 040394 152 VLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDI---GSSRQVFDETLDKNVVSWTSMIAGYVQND--- 225 (691)
Q Consensus 152 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g--- 225 (691)
+...+.+.|++++|.++|+...+.| ++.++..|...|...|+. ++|...|++..+.+...+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g--~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~ 86 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG--YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGAT 86 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT--CCTGGGTCC----------------------------CHHHHHHHHHTC--CC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC
Confidence 3444556677777777777776665 344455566666666666 77777777766656666777766555554
Q ss_pred --ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCh---hhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCC----
Q 040394 226 --CAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRAL---HQGKWLHGYILKIGIEINSHLVTALLDMYVKCGN---- 296 (691)
Q Consensus 226 --~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---- 296 (691)
++++|++.|++..+.|... .+..+...|...+.. ..+.+.+....+.| +......|...|...+.
T Consensus 87 ~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 87 EAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp HHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGG
T ss_pred CcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccC
Confidence 6678888888887765432 455555555544443 33444444444444 34455666666766663
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHhcC---CchhHHHHHHHhhHCCCCCcHHHHHHHHHHHhcC----CChhhHHHH
Q 040394 297 IRDARSVFDELCSIDLVSWTAMIVGYTQSG---YPDKALKLFTDKKWADFFPNHVTIASVLSASAQL----GNLNMGRMV 369 (691)
Q Consensus 297 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----~~~~~a~~~ 369 (691)
.+.+..+++.....+..++..|...|...| +.++|++.|+...+.|.. +...+..+...|... ++.++|...
T Consensus 161 ~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~ 239 (452)
T 3e4b_A 161 LDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQAL 239 (452)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 444555566656666667777777787788 777888888877776533 333333333344332 456666666
Q ss_pred HHHHHHhCCCchhHHHHHHHH-h--HhcCChHHHHHHHHhCC
Q 040394 370 HSLGIRLGLEDYTVINALVDM-Y--AKCHVIADARYIFETTS 408 (691)
Q Consensus 370 ~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~ 408 (691)
++... +.++..+..+... | ...++.++|...|++..
T Consensus 240 ~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa 278 (452)
T 3e4b_A 240 LEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGR 278 (452)
T ss_dssp HHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred HHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 66555 2234444444443 2 33455555555555443
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.53 E-value=1.6e-12 Score=125.08 Aligned_cols=256 Identities=9% Similarity=-0.067 Sum_probs=151.4
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCH
Q 040394 351 ASVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDA 430 (691)
Q Consensus 351 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~ 430 (691)
......+...|++++|...++.+.+..+.+..++..+...|...|++++|...+++..+... ......
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------------~~~~~~ 74 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN------------ATKAKS 74 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSC------------TTTCCH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccC------------chhHHH
Confidence 34445566666777777777776666666666667777777777888888777777654200 011123
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CHhHHHHHHHHH
Q 040394 431 VTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE--K-NTVTWSAMIGGY 507 (691)
Q Consensus 431 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~ 507 (691)
.++..+...+...|+++.|...++...+.. |.+...+..+...|...|++++|...|++..+ | +...|..+...+
T Consensus 75 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 152 (272)
T 3u4t_A 75 ADFEYYGKILMKKGQDSLAIQQYQAAVDRD--TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAY 152 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Confidence 346667777777777777777777777766 56666777777777777777777777776654 2 344555555222
Q ss_pred hcCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCC---HHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCC
Q 040394 508 GMQGDGGGSLALFSDMLNEEVQPN-EVIFTTILSACSHTGM---VGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGR 583 (691)
Q Consensus 508 ~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~---~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 583 (691)
...+++++|.+.++++.+. .|+ ...+..+..++...|+ +++|...+++..+...-.|+.. -
T Consensus 153 ~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~------------ 217 (272)
T 3u4t_A 153 YYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-K------------ 217 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-H------------
T ss_pred HHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-h------------
Confidence 2333666666666665553 232 3333333333333333 3334443333321111111100 0
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCC
Q 040394 584 LEEALEFMENMPIEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDG 648 (691)
Q Consensus 584 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 648 (691)
..-..+|..+...+...|++++|...++++++++|+++.....+..+....+
T Consensus 218 -------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 218 -------------DELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp -------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred -------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 0012467778888999999999999999999999999988888877655543
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.52 E-value=1.4e-12 Score=123.86 Aligned_cols=194 Identities=9% Similarity=-0.019 Sum_probs=102.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccc---CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc
Q 040394 468 VGTALLNFYAKCGDAQSARMVFDAMRE---KNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSH 544 (691)
Q Consensus 468 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 544 (691)
.+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|.+.++++.+.. +.+...+..+...+..
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHH
Confidence 334444444444555555444444432 133444445555555555555555555555432 2234444455555555
Q ss_pred cCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040394 545 TGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEFMENM-P-IEPDVSLFGAFLHGCGLYSRFDLGEV 621 (691)
Q Consensus 545 ~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~ 621 (691)
.|++++|.++++++.. .+..|+ ...+..+...+...|++++|.+.+++. . .+.+...+..+...+...|++++|..
T Consensus 118 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555432 123332 344555555555666666666655554 2 12234555556666666666666666
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhC
Q 040394 622 MIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQR 663 (691)
Q Consensus 622 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 663 (691)
.++++.+..|++...+..++.++...|++++|.++++++.+.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 197 YYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666666666553
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.51 E-value=2.3e-12 Score=119.96 Aligned_cols=195 Identities=13% Similarity=0.031 Sum_probs=104.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 040394 466 VYVGTALLNFYAKCGDAQSARMVFDAMRE---KNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSAC 542 (691)
Q Consensus 466 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 542 (691)
...+..+...+...|++++|...++++.+ .+...|..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 33444444444555555555555544432 133445555555555555555555555555432 22344455555555
Q ss_pred ccc-CCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHH
Q 040394 543 SHT-GMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEFMENM-PIE-PDVSLFGAFLHGCGLYSRFDL 618 (691)
Q Consensus 543 ~~~-g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~ 618 (691)
... |++++|...++++.+ .+..|+ ...+..+...+...|++++|++.++++ ... .+...+..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 555 566666655555533 222232 344555555566666666666665555 222 234555666666666666666
Q ss_pred HHHHHHHHHhcCC-CCchhHHHHHHHHHhCCCcHHHHHHHHHHHh
Q 040394 619 GEVMIKKMLELHP-DKACYYVLVSNLYASDGRWIRVNQVRELMKQ 662 (691)
Q Consensus 619 A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 662 (691)
|...++++.+..| +++..+..++.++...|+.++|..+++.+.+
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6666666666666 6566666666666666666666666666554
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.51 E-value=5e-13 Score=126.20 Aligned_cols=211 Identities=11% Similarity=0.052 Sum_probs=122.5
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHhHHHHHH
Q 040394 428 PDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE---KNTVTWSAMI 504 (691)
Q Consensus 428 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 504 (691)
....++..+...+...|+++.|...++.+.+.. +.+...+..+...|...|++++|...+++..+ .+...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 344556666667777778888888777777765 56677777777777777777777777776653 2556666777
Q ss_pred HHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCCh
Q 040394 505 GGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRL 584 (691)
Q Consensus 505 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 584 (691)
..+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+.+.|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCH
Confidence 77777777777777777776642 334555666666666777777777777666433 122355566666666666666
Q ss_pred HHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 040394 585 EEALEFMENM-P-IEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNL 643 (691)
Q Consensus 585 ~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 643 (691)
++|++.++++ . .+.+..++..+...+...|++++|...++++++..|+++..+..++.+
T Consensus 176 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 176 DEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 6666666665 2 223455666666666666666666666666666666666655555443
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.51 E-value=3.8e-12 Score=120.89 Aligned_cols=205 Identities=10% Similarity=0.015 Sum_probs=177.4
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHhHHHHHHHH
Q 040394 430 AVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE---KNTVTWSAMIGG 506 (691)
Q Consensus 430 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 506 (691)
...+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|...++++.+ .+...|..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHH
Confidence 4567888888999999999999999999887 77889999999999999999999999998764 367789999999
Q ss_pred HhcCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHHhcCCh
Q 040394 507 YGMQGDGGGSLALFSDMLNEEVQPN-EVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVP-SMKHYVCMVDLLARAGRL 584 (691)
Q Consensus 507 ~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~ 584 (691)
|...|++++|.++++++.+.+..|+ ...+..+...+...|++++|.+.+++..+. .| +...+..+...+...|++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL---NRNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHcCCH
Confidence 9999999999999999988444564 467777888999999999999999988544 34 477888999999999999
Q ss_pred HHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 040394 585 EEALEFMENM-PI-EPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVL 639 (691)
Q Consensus 585 ~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 639 (691)
++|.+.++++ .. +.+...+..+...+...|++++|...++++.+..|+++.....
T Consensus 192 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 192 VPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9999999998 43 3456788888889999999999999999999999998766543
No 48
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.50 E-value=3.8e-10 Score=120.67 Aligned_cols=206 Identities=8% Similarity=-0.018 Sum_probs=159.2
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHH-HHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc----------
Q 040394 426 VSPDAVTLVSVISACASLGAVQVGS-SLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE---------- 494 (691)
Q Consensus 426 ~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------- 494 (691)
++-+...|.....-+...|+.+.|. .+++...... |.+...+...+....+.|+++.|..+|+.+.+
T Consensus 339 ~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~--P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~ 416 (679)
T 4e6h_A 339 VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI--PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALM 416 (679)
T ss_dssp TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3446677888888788889988996 9999998765 77787888889999999999999999998764
Q ss_pred ---CC------------HhHHHHHHHHHhcCCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhcc-cCCHHHHHHHHHH
Q 040394 495 ---KN------------TVTWSAMIGGYGMQGDGGGSLALFSDMLNE-EVQPNEVIFTTILSACSH-TGMVGEGWKCFYS 557 (691)
Q Consensus 495 ---~~------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~-~g~~~~A~~~~~~ 557 (691)
|+ ...|...+....+.|+.+.|..+|.+..+. + .+....|......-.+ .++.+.|.++|+.
T Consensus 417 ~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~ 495 (679)
T 4e6h_A 417 EDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLEL 495 (679)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred hccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 21 236888888888889999999999999886 2 1223334332222223 3569999999998
Q ss_pred chhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 040394 558 MCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENM-PIEP----DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPD 632 (691)
Q Consensus 558 m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 632 (691)
.++.+ .-+...+...++.....|+.+.|..+|++. ...| ....|...+.--.+.|+.+.+..+.+++.+..|+
T Consensus 496 ~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 496 GLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 87763 234556678888888999999999999997 3333 2357888888888999999999999999999999
Q ss_pred Cchh
Q 040394 633 KACY 636 (691)
Q Consensus 633 ~~~~ 636 (691)
++.+
T Consensus 574 ~~~~ 577 (679)
T 4e6h_A 574 VNKL 577 (679)
T ss_dssp CCHH
T ss_pred CcHH
Confidence 6543
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.49 E-value=2.5e-12 Score=123.83 Aligned_cols=227 Identities=7% Similarity=-0.024 Sum_probs=188.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--CC----HhHHHHHHH
Q 040394 432 TLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE--KN----TVTWSAMIG 505 (691)
Q Consensus 432 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~ 505 (691)
.+......+...|+++.|...++...+.. |.+...+..+...|...|++++|...+++..+ ++ ...|..+..
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 45556678889999999999999999887 67777888899999999999999999998875 22 234889999
Q ss_pred HHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCCh
Q 040394 506 GYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRL 584 (691)
Q Consensus 506 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~ 584 (691)
.+...|++++|+..+++..+.. +.+...+..+...+...|++++|.+.+++.. ...|+ ...+..+...+...+++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI---RPTTTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC---CSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHh---hcCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999853 3355788888889999999999999999764 44665 66777777344555699
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcC---CCC-----chhHHHHHHHHHhCCCcH
Q 040394 585 EEALEFMENM-PIEP-DVSLFGAFLHGCGLYSR---FDLGEVMIKKMLELH---PDK-----ACYYVLVSNLYASDGRWI 651 (691)
Q Consensus 585 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~ 651 (691)
++|++.++++ ...| +...+..+...+...|+ +++|...++++.+.. |+. ...+..++.+|...|+++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999998 4444 46778888888888888 888999999999864 542 257888999999999999
Q ss_pred HHHHHHHHHHhCC
Q 040394 652 RVNQVRELMKQRG 664 (691)
Q Consensus 652 ~A~~~~~~~~~~g 664 (691)
+|.+.+++..+..
T Consensus 239 ~A~~~~~~al~~~ 251 (272)
T 3u4t_A 239 KADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998854
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.49 E-value=1.6e-11 Score=118.18 Aligned_cols=224 Identities=10% Similarity=-0.054 Sum_probs=193.5
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcccC-CHhHHHHH
Q 040394 429 DAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAK----CGDAQSARMVFDAMREK-NTVTWSAM 503 (691)
Q Consensus 429 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l 503 (691)
+..++..+...+...|++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+. +...+..+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 80 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLL 80 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 55677788888999999999999999999843 45677788899999 99999999999988754 77888999
Q ss_pred HHHHhc----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc----cCCHHHHHHHHHHchhhcCCCCChhHHHHHH
Q 040394 504 IGGYGM----QGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSH----TGMVGEGWKCFYSMCRDFKFVPSMKHYVCMV 575 (691)
Q Consensus 504 i~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 575 (691)
...|.. .+++++|+..|++..+.+ +...+..+-..+.. .+++++|.+.+++..+. + +...+..+.
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg 153 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILG 153 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHH
Confidence 999999 999999999999999875 67778888888888 99999999999988543 3 566777888
Q ss_pred HHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh-
Q 040394 576 DLLAR----AGRLEEALEFMENMPIEPDVSLFGAFLHGCGL----YSRFDLGEVMIKKMLELHPDKACYYVLVSNLYAS- 646 (691)
Q Consensus 576 ~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~- 646 (691)
..|.. .+++++|++.+++.-...+...+..+...+.. .+++++|...++++.+..| +..+..++.+|..
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcC
Confidence 88888 89999999999988222456788889999999 9999999999999999866 6788899999999
Q ss_pred ---CCCcHHHHHHHHHHHhCCC
Q 040394 647 ---DGRWIRVNQVRELMKQRGL 665 (691)
Q Consensus 647 ---~g~~~~A~~~~~~~~~~g~ 665 (691)
.|++++|.+.+++..+.|.
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCcccCHHHHHHHHHHHHHcCC
Confidence 9999999999999998775
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.49 E-value=8.6e-12 Score=115.99 Aligned_cols=207 Identities=9% Similarity=-0.037 Sum_probs=178.2
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHhHHHHHHH
Q 040394 429 DAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE---KNTVTWSAMIG 505 (691)
Q Consensus 429 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 505 (691)
+...+..+...+...|+++.|...++.+.+.. +.+...+..+...|...|++++|...+++..+ .+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 45677888889999999999999999999987 67888999999999999999999999998864 36778999999
Q ss_pred HHhcC-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcC
Q 040394 506 GYGMQ-GDGGGSLALFSDMLNEEVQPN-EVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAG 582 (691)
Q Consensus 506 ~~~~~-~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g 582 (691)
.+... |++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+. .|+ ...+..+...+.+.|
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA---QPQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHT
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHcC
Confidence 99999 999999999999998434454 467778888999999999999999988544 444 778889999999999
Q ss_pred ChHHHHHHHHhC-CC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 040394 583 RLEEALEFMENM-PI-E-PDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLV 640 (691)
Q Consensus 583 ~~~~A~~~~~~~-~~-~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 640 (691)
++++|.+.++++ .. + .+...+..+...+...|+.+.|..+++.+.+..|+++.....+
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 999999999998 32 3 4666777788888899999999999999999999988776554
No 52
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.49 E-value=1.6e-12 Score=120.03 Aligned_cols=193 Identities=8% Similarity=-0.065 Sum_probs=103.8
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHH
Q 040394 110 DFYSFQVMIRWYFLNDLYKDIVEFYKCMRKRLKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDM 189 (691)
Q Consensus 110 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 189 (691)
+...+..+...+.+.|++++|+..|++..+.. +.+...+..+...+.+.|++++|...+++.++..|.+...+..+..+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA 82 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 44456666666666666777776666666542 33445566666666666777777777777666666666666666666
Q ss_pred hHhc-----------CChHHHHHHHhccCC--C-ChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 040394 190 YAKC-----------RDIGSSRQVFDETLD--K-NVVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTA 255 (691)
Q Consensus 190 ~~~~-----------g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~ 255 (691)
+.+. |++++|...|++..+ | +...|..+...+...|++++|++.|++..+.. .+...+..+..+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~ 160 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHH
Confidence 6666 555555555554422 2 34455555555555555555555555555544 344555555555
Q ss_pred HHccCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHh
Q 040394 256 CAKLRALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNIRDARSVFDE 306 (691)
Q Consensus 256 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 306 (691)
+...|++++|...++...+.. +.+...+..+...+.+.|++++|.+.|++
T Consensus 161 ~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 555555555555555555442 12344455555555555555555555544
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.48 E-value=1.3e-12 Score=123.24 Aligned_cols=199 Identities=13% Similarity=0.076 Sum_probs=156.2
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040394 463 SSNVYVGTALLNFYAKCGDAQSARMVFDAMRE---KNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTIL 539 (691)
Q Consensus 463 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 539 (691)
......+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|+..++++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ----------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 34566777788889999999999999998875 367789999999999999999999999999863 44677888888
Q ss_pred HHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHH
Q 040394 540 SACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENM-P-IEPDVSLFGAFLHGCGLYSRFD 617 (691)
Q Consensus 540 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~ 617 (691)
..+...|++++|.+.++++.+. .+.+...+..+...+.+.|++++|.+.++++ . .+.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHH
Confidence 8999999999999999988554 2334778888999999999999999999998 3 3446778899999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCC
Q 040394 618 LGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRG 664 (691)
Q Consensus 618 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 664 (691)
+|...++++.+..|+++.++..++.+|...|++++|.+.++++.+..
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999998754
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.47 E-value=1.9e-12 Score=129.69 Aligned_cols=246 Identities=11% Similarity=0.046 Sum_probs=199.8
Q ss_pred chhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCc-HHHHHHHHHHHHH
Q 040394 380 DYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLGA-VQVGSSLHAYSTK 458 (691)
Q Consensus 380 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~ 458 (691)
...++..+..++.+.|++++|+..++++...+ +-+..+|..+..++...|+ +++|...++++.+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~---------------P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~ 160 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN---------------AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE 160 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC---------------ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Confidence 44556777788888899999999888876532 2346778888889999996 9999999999999
Q ss_pred cCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHH
Q 040394 459 QGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE---KNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIF 535 (691)
Q Consensus 459 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 535 (691)
.. |.+...|..+..++...|++++|+..|+++.+ .+...|..+..++...|++++|+..++++++.. +-+...|
T Consensus 161 l~--P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~ 237 (382)
T 2h6f_A 161 EQ--PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVW 237 (382)
T ss_dssp HC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHH
T ss_pred HC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHH
Confidence 88 78899999999999999999999999998874 377899999999999999999999999999853 3356778
Q ss_pred HHHHHHhcc-cCCHHHH-----HHHHHHchhhcCCCCC-hhHHHHHHHHHHhcC--ChHHHHHHHHhCCCCC-CHHHHHH
Q 040394 536 TTILSACSH-TGMVGEG-----WKCFYSMCRDFKFVPS-MKHYVCMVDLLARAG--RLEEALEFMENMPIEP-DVSLFGA 605 (691)
Q Consensus 536 ~~ll~~~~~-~g~~~~A-----~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~ 605 (691)
+.+..++.. .|..++| ++.+++.++ +.|+ ...|..+..++...| ++++|++.+.++...| +...+..
T Consensus 238 ~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~ 314 (382)
T 2h6f_A 238 NQRYFVISNTTGYNDRAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAF 314 (382)
T ss_dssp HHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHH
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHH
Confidence 877778877 5665777 477776643 5676 678888888888888 6899999988874444 4568888
Q ss_pred HHHHHHhcC--------C-HHHHHHHHHHH-HhcCCCCchhHHHHHHHHHh
Q 040394 606 FLHGCGLYS--------R-FDLGEVMIKKM-LELHPDKACYYVLVSNLYAS 646 (691)
Q Consensus 606 l~~~~~~~g--------~-~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 646 (691)
++..|.+.| + .++|..+++++ .+.+|....+|..++..+..
T Consensus 315 La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 315 LVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 888888764 2 58999999999 89999999999888776654
No 55
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.46 E-value=2.1e-12 Score=129.30 Aligned_cols=227 Identities=10% Similarity=0.024 Sum_probs=195.1
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCC-HHHHHHHHHhccc---CCHhHHHHHHH
Q 040394 430 AVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGD-AQSARMVFDAMRE---KNTVTWSAMIG 505 (691)
Q Consensus 430 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~ 505 (691)
...|..+...+...|+.++|...++.+.+.. |.+...|+.+...+...|+ +++|+..|++..+ .+...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 3567777888889999999999999999998 7899999999999999997 9999999999875 37789999999
Q ss_pred HHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHh-cCC
Q 040394 506 GYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLAR-AGR 583 (691)
Q Consensus 506 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~-~g~ 583 (691)
++...|++++|+..|+++++.. +-+...|..+..++...|++++|+..++++++ +.|+ ...|+.+..++.+ .|.
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999853 33567888888899999999999999998864 4565 7889999999999 666
Q ss_pred hHHH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCC------
Q 040394 584 LEEA-----LEFMENM-PIEP-DVSLFGAFLHGCGLYS--RFDLGEVMIKKMLELHPDKACYYVLVSNLYASDG------ 648 (691)
Q Consensus 584 ~~~A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------ 648 (691)
.++| ++.+++. ...| +...|..+...+...| ++++|...++++ +..|+++..+..++.+|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred chHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 5777 4777776 4445 5678999998898888 699999999998 999999999999999999874
Q ss_pred ---CcHHHHHHHHHH-HhC
Q 040394 649 ---RWIRVNQVRELM-KQR 663 (691)
Q Consensus 649 ---~~~~A~~~~~~~-~~~ 663 (691)
.+++|+++++++ .+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 358999999998 554
No 56
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.45 E-value=4.6e-13 Score=129.19 Aligned_cols=239 Identities=8% Similarity=-0.089 Sum_probs=116.6
Q ss_pred CCChhHHHHHHHHHHHcCCC---CCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHH
Q 040394 124 NDLYKDIVEFYKCMRKRLKE---HDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSR 200 (691)
Q Consensus 124 ~~~~~~a~~~~~~m~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 200 (691)
.|++++|+..|+++.+.... .+..++..+...+...|++++|...++.+.+..+.+..++..+...|...|++++|.
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 34455555555555443211 122344444555555555555555555555555445555555555555555555555
Q ss_pred HHHhccCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCC
Q 040394 201 QVFDETLD---KNVVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIGI 277 (691)
Q Consensus 201 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~ 277 (691)
..|++..+ .+..+|..+...+...|++++|.+.|+++.+. .|+.......+..+...|+.++|...+.......
T Consensus 98 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~- 174 (275)
T 1xnf_A 98 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS- 174 (275)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 55554422 23445555555555555555555555555542 2333333333333444555666666665555442
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------hhHHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCcHHHH
Q 040394 278 EINSHLVTALLDMYVKCGNIRDARSVFDELCSID-------LVSWTAMIVGYTQSGYPDKALKLFTDKKWADFFPNHVTI 350 (691)
Q Consensus 278 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 350 (691)
+++...+. ++..+...++.++|...++.....+ ..+|..+...+.+.|++++|...|++.... .|+. +
T Consensus 175 ~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--~ 249 (275)
T 1xnf_A 175 DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN--F 249 (275)
T ss_dssp CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--C
T ss_pred CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--H
Confidence 22222222 4444555555566666665553321 245555666666666666666666666554 2322 1
Q ss_pred HHHHHHHhcCCChhhHHHHH
Q 040394 351 ASVLSASAQLGNLNMGRMVH 370 (691)
Q Consensus 351 ~~ll~~~~~~~~~~~a~~~~ 370 (691)
.....++...|++++|...+
T Consensus 250 ~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHhhHHHH
Confidence 11123444445555554443
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.43 E-value=1e-11 Score=127.29 Aligned_cols=293 Identities=12% Similarity=0.021 Sum_probs=185.6
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHhCCCc----hhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCC
Q 040394 353 VLSASAQLGNLNMGRMVHSLGIRLGLED----YTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSP 428 (691)
Q Consensus 353 ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p 428 (691)
....+...|++++|...++.+.+..+.+ ..++..+...|...|++++|...+++...... ..+-.|
T Consensus 15 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~----------~~~~~~ 84 (406)
T 3sf4_A 15 EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLAR----------TIGDQL 84 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----------HTTCHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----------hccccH
Confidence 3334444444444444444444444332 23455666667777777777776665432100 001111
Q ss_pred -CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC----CCCchhHHHHHHHHHHhcCC--------------------HH
Q 040394 429 -DAVTLVSVISACASLGAVQVGSSLHAYSTKQGL----LSSNVYVGTALLNFYAKCGD--------------------AQ 483 (691)
Q Consensus 429 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~--------------------~~ 483 (691)
...++..+...+...|+++.|...++...+... .+....++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 244677777888889999999999888765421 01124467778888888888 88
Q ss_pred HHHHHHHhccc-----C----CHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhcccCCHH
Q 040394 484 SARMVFDAMRE-----K----NTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEV-QPN----EVIFTTILSACSHTGMVG 549 (691)
Q Consensus 484 ~A~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~ 549 (691)
+|...+++..+ . ...++..+...|...|++++|...+++..+... .++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 88888876542 1 234677778888888888888888888775310 122 135666777788888888
Q ss_pred HHHHHHHHchhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHH
Q 040394 550 EGWKCFYSMCRDFKFVPS----MKHYVCMVDLLARAGRLEEALEFMENM----PIEPD----VSLFGAFLHGCGLYSRFD 617 (691)
Q Consensus 550 ~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~ 617 (691)
+|...+++......-.++ ..++..+...|...|++++|.+.+++. ...++ ..++..+...+...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 888888876433211111 456677788888888888888887776 11122 346777777788888888
Q ss_pred HHHHHHHHHHhcCCCCc------hhHHHHHHHHHhCCCcHHHHH
Q 040394 618 LGEVMIKKMLELHPDKA------CYYVLVSNLYASDGRWIRVNQ 655 (691)
Q Consensus 618 ~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~ 655 (691)
+|...+++++++.+... .++..++.++...|+...+..
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 368 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNN 368 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC--
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHH
Confidence 88888888888887762 345566666666666654433
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.43 E-value=1.6e-12 Score=133.58 Aligned_cols=265 Identities=10% Similarity=-0.008 Sum_probs=204.0
Q ss_pred HHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCC-H----HHHHHHHHHHhccCcHHHHHHHHHHHH
Q 040394 383 VINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPD-A----VTLVSVISACASLGAVQVGSSLHAYST 457 (691)
Q Consensus 383 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~-~----~~~~~ll~~~~~~~~~~~a~~~~~~~~ 457 (691)
.+..+...+...|++++|...|++..+. .|+ . ..+..+...+...|+++.|...+++..
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~----------------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 113 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQA----------------GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL 113 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHh----------------cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445667788889999999888887643 233 2 467788888999999999999999877
Q ss_pred Hc----CCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---------CHhHHHHHHHHHhcCCC------------
Q 040394 458 KQ----GLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMREK---------NTVTWSAMIGGYGMQGD------------ 512 (691)
Q Consensus 458 ~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~------------ 512 (691)
+. +..+.....+..+...|...|++++|...+++..+- ...++..+...|...|+
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~ 193 (411)
T 4a1s_A 114 TLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGD 193 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCH
T ss_pred HHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhh
Confidence 54 111345677888899999999999999999887631 24478888899999999
Q ss_pred -----hHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC----hhHHHHHHHHH
Q 040394 513 -----GGGSLALFSDMLNE----EVQPN-EVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS----MKHYVCMVDLL 578 (691)
Q Consensus 513 -----~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~ 578 (691)
+++|+..+++..+. +-.|. ..++..+...+...|++++|.+.+++..+...-.++ ...+..+...|
T Consensus 194 ~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 273 (411)
T 4a1s_A 194 DVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSH 273 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 99999998887652 11122 246777777899999999999999887543221122 23788899999
Q ss_pred HhcCChHHHHHHHHhC-C---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------chhHHHHHHHH
Q 040394 579 ARAGRLEEALEFMENM-P---IEPD----VSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDK------ACYYVLVSNLY 644 (691)
Q Consensus 579 ~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~ 644 (691)
...|++++|.+.+++. . ...+ ..++..+...+...|++++|...++++++..++. ...+..++.+|
T Consensus 274 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 353 (411)
T 4a1s_A 274 IFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAH 353 (411)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Confidence 9999999999999887 1 1111 4578888899999999999999999999864432 34788999999
Q ss_pred HhCCCcHHHHHHHHHHHhC
Q 040394 645 ASDGRWIRVNQVRELMKQR 663 (691)
Q Consensus 645 ~~~g~~~~A~~~~~~~~~~ 663 (691)
...|++++|.+.+++..+.
T Consensus 354 ~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 354 SAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHH
Confidence 9999999999999998764
No 59
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.42 E-value=1.4e-11 Score=110.63 Aligned_cols=165 Identities=9% Similarity=0.069 Sum_probs=122.1
Q ss_pred CHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHH
Q 040394 496 NTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCM 574 (691)
Q Consensus 496 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~l 574 (691)
+...|..+...|.+.|++++|++.|++..+.. +-+...+..+..++...|++++|...++..... .|+ ...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHHH
Confidence 34556666666666777777777777766642 224455666666777777777777777765332 333 5556666
Q ss_pred HHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHH
Q 040394 575 VDLLARAGRLEEALEFMENM-P-IEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIR 652 (691)
Q Consensus 575 i~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 652 (691)
...+...++++.|.+.+.+. . .+.+...+..+...+.+.|++++|+..++++++.+|+++.++..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 77777788888888877776 2 233566788888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 040394 653 VNQVRELMKQRG 664 (691)
Q Consensus 653 A~~~~~~~~~~g 664 (691)
|++.+++.++..
T Consensus 160 A~~~~~~al~~~ 171 (184)
T 3vtx_A 160 AVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 999999988753
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.41 E-value=4.4e-12 Score=126.10 Aligned_cols=265 Identities=12% Similarity=0.032 Sum_probs=203.6
Q ss_pred HHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCC-----HHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 040394 384 INALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPD-----AVTLVSVISACASLGAVQVGSSLHAYSTK 458 (691)
Q Consensus 384 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 458 (691)
+......+...|++++|...|++..+. .|+ ...+..+...+...|+++.|...++...+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~----------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 71 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQV----------------GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 71 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhh----------------CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345567788899999999999887643 222 35677888899999999999999988654
Q ss_pred c----CCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc-----CC----HhHHHHHHHHHhcCCC-------------
Q 040394 459 Q----GLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE-----KN----TVTWSAMIGGYGMQGD------------- 512 (691)
Q Consensus 459 ~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~------------- 512 (691)
. +..+.....+..+...|...|++++|...+++..+ ++ ..++..+...+...|+
T Consensus 72 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 151 (338)
T 3ro2_A 72 LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEF 151 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----C
T ss_pred HhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhh
Confidence 3 21133466788889999999999999999988763 22 3378888899999999
Q ss_pred -------hHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC----hhHHHHHHH
Q 040394 513 -------GGGSLALFSDMLNE----EVQPN-EVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS----MKHYVCMVD 576 (691)
Q Consensus 513 -------~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~ 576 (691)
+++|...+++..+. +-.|. ...+..+...+...|++++|.+.+++..+...-.++ ...+..+..
T Consensus 152 ~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 231 (338)
T 3ro2_A 152 PEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGN 231 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 99999998887642 11121 246677777889999999999999887543221222 337888899
Q ss_pred HHHhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------chhHHHHHH
Q 040394 577 LLARAGRLEEALEFMENM----PIEPD----VSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDK------ACYYVLVSN 642 (691)
Q Consensus 577 ~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~ 642 (691)
.+...|++++|.+.+++. +..++ ..++..+...+...|++++|...++++++..|.. ..++..++.
T Consensus 232 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 311 (338)
T 3ro2_A 232 AYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGN 311 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 999999999999998887 11122 4577888889999999999999999999865432 347888999
Q ss_pred HHHhCCCcHHHHHHHHHHHhCC
Q 040394 643 LYASDGRWIRVNQVRELMKQRG 664 (691)
Q Consensus 643 ~~~~~g~~~~A~~~~~~~~~~g 664 (691)
+|...|++++|.+.+++..+..
T Consensus 312 ~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 312 AYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHcCChHHHHHHHHHHHHHH
Confidence 9999999999999999998743
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.41 E-value=2.8e-12 Score=133.69 Aligned_cols=207 Identities=9% Similarity=-0.025 Sum_probs=180.9
Q ss_pred cHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhccc--C-CHhHHHHHHHHHhcCCChHHHHHHH
Q 040394 445 AVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDA-QSARMVFDAMRE--K-NTVTWSAMIGGYGMQGDGGGSLALF 520 (691)
Q Consensus 445 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~ 520 (691)
.++.+...++...... +.+...+..+...|...|++ ++|+..|++..+ | +...|..+...|...|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3566677777666554 67888999999999999999 999999998864 3 5789999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhccc---------CCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhc--------C
Q 040394 521 SDMLNEEVQPNEVIFTTILSACSHT---------GMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARA--------G 582 (691)
Q Consensus 521 ~~m~~~g~~p~~~~~~~ll~~~~~~---------g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~--------g 582 (691)
++..+. .|+...+..+..++... |++++|.+.+++..+ +.|+ ...|..+..+|... |
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ---MDVLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHhhccccc
Confidence 999985 68878888888899999 999999999998754 3565 77889999999998 9
Q ss_pred ChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHH
Q 040394 583 RLEEALEFMENM-PIEP----DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVR 657 (691)
Q Consensus 583 ~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 657 (691)
++++|++.|++. ...| +...|..+..++...|++++|...++++++++|+++..+..++.++...|++++|.+.+
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999998 4455 77899999999999999999999999999999999999999999999999999998754
Q ss_pred H
Q 040394 658 E 658 (691)
Q Consensus 658 ~ 658 (691)
.
T Consensus 316 ~ 316 (474)
T 4abn_A 316 G 316 (474)
T ss_dssp T
T ss_pred c
Confidence 3
No 62
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.41 E-value=3.2e-09 Score=113.50 Aligned_cols=436 Identities=9% Similarity=0.051 Sum_probs=242.8
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHcccCC---hhHHHHHHHHHHHhCC--CChhHH
Q 040394 109 PDFYSFQVMIRWYFLNDLYKDIVEFYKCMRKRLKEHDNFVFSKVLKACCELRD---IDEGMKVHCEIVKVGG--PDSFVL 183 (691)
Q Consensus 109 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~--~~~~~~ 183 (691)
.|..+|..++..+.+.+.++.+..+|+++... ++.....|..-+..-.+.++ .+.+..+|++.+...+ ++...|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 35556666666666666666677777766665 34455556666665556666 6666677766666553 455566
Q ss_pred HHHHHHhHhcCCh--------HHHHHHHhcc-----C-CC-ChhhHHHHHHHHH---------hCCChhHHHHHHHHHHh
Q 040394 184 TGLVDMYAKCRDI--------GSSRQVFDET-----L-DK-NVVSWTSMIAGYV---------QNDCAQEGLVLFNRMRE 239 (691)
Q Consensus 184 ~~l~~~~~~~g~~--------~~A~~~~~~~-----~-~~-~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~ 239 (691)
...+....+.++. +...++|+.. . ++ +...|...+.-.. .+++++.+..+|++...
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 6666555554433 2223444432 1 22 2335555554332 12334555666666553
Q ss_pred CCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhc-------C----
Q 040394 240 GFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNIRDARSVFDEL-------C---- 308 (691)
Q Consensus 240 ~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~---- 308 (691)
.....-..+|......-... +...+.+++.+. ..+++.|...+.++ .
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~-~~~~a~~~~~e~---------------------~~~y~~Ar~~~~e~~~~~~~l~r~~p 280 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDV-NQLTARRHIGEL---------------------SAQYMNARSLYQDWLNITKGLKRNLP 280 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHH-CTTTHHHHHHHH---------------------HHHHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred CccHHHHHHHHHHHHHHHhc-CcchHHHHHHHh---------------------hHHHHHHHHHHHHHHHHHHhHhhccc
Confidence 11110111221111110000 111111111110 11223333333321 0
Q ss_pred C----------C--C------hhHHHHHHHHHHhcCC-------chhHHHHHHHhhHCCCCCcHHHHHHHHHHHhcCCCh
Q 040394 309 S----------I--D------LVSWTAMIVGYTQSGY-------PDKALKLFTDKKWADFFPNHVTIASVLSASAQLGNL 363 (691)
Q Consensus 309 ~----------~--~------~~~~~~li~~~~~~g~-------~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 363 (691)
. | + ...|...+.---..+. .+.+..+|++.... +.-+...|.....-+...|+.
T Consensus 281 ~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~ 359 (679)
T 4e6h_A 281 ITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTD 359 (679)
T ss_dssp SSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCC
T ss_pred cccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcH
Confidence 0 0 0 1245555543322221 23355677777665 344677787888888888999
Q ss_pred hhHH-HHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCC------------H
Q 040394 364 NMGR-MVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPD------------A 430 (691)
Q Consensus 364 ~~a~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~------------~ 430 (691)
++|. .+++.+....|.+...+-..+....+.|++++|..+|+++...-...+.. +..+. |+ .
T Consensus 360 ~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~----~~~~~-p~~~~~~~~~~~~~~ 434 (679)
T 4e6h_A 360 STVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAA----LMEDD-PTNESAINQLKSKLT 434 (679)
T ss_dssp TTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH----HHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhh----hhhcc-CcchhhhhhhccchH
Confidence 9996 99999999888788888889999999999999999999876420000000 00001 31 2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHc-CCCCCchhHHHHHHHHHHhc-CCHHHHHHHHHhccc---CCHhHHHHHHH
Q 040394 431 VTLVSVISACASLGAVQVGSSLHAYSTKQ-GLLSSNVYVGTALLNFYAKC-GDAQSARMVFDAMRE---KNTVTWSAMIG 505 (691)
Q Consensus 431 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~---~~~~~~~~li~ 505 (691)
.+|...+....+.|+.+.|..+|....+. + +.....|...+..-.+. ++.+.|.++|+...+ .+...|...+.
T Consensus 435 ~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~--~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~ 512 (679)
T 4e6h_A 435 YVYCVYMNTMKRIQGLAASRKIFGKCRRLKK--LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLD 512 (679)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG--GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence 35677777777788888888888888776 3 23334444333333344 347888888887764 35556667777
Q ss_pred HHhcCCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHH
Q 040394 506 GYGMQGDGGGSLALFSDMLNEEVQP--NEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLL 578 (691)
Q Consensus 506 ~~~~~~~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~ 578 (691)
.....|+.+.|..+|++.......+ ....|...+..-...|+.+.+..+.+++.+. .|+......+++-|
T Consensus 513 fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~---~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 513 FLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK---FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH---STTCCHHHHHHHHT
T ss_pred HHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCcHHHHHHHHh
Confidence 7777788888888888877653222 2245666666666778888888888777544 34433333344433
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.39 E-value=5.2e-12 Score=129.47 Aligned_cols=258 Identities=10% Similarity=-0.009 Sum_probs=170.3
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHh----CCC--chhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhh
Q 040394 350 IASVLSASAQLGNLNMGRMVHSLGIRL----GLE--DYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLD 423 (691)
Q Consensus 350 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~ 423 (691)
+..+...+...|++++|...++.+... +.. ...++..+...|...|++++|...+++....... .
T Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--------~- 120 (406)
T 3sf4_A 50 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE--------L- 120 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------H-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------c-
Confidence 333334444444444444444433222 111 3445666777777778888887777765432000 0
Q ss_pred CCCCCCHHHHHHHHHHHhccCc--------------------HHHHHHHHHHHHHc----CCCCCchhHHHHHHHHHHhc
Q 040394 424 DNVSPDAVTLVSVISACASLGA--------------------VQVGSSLHAYSTKQ----GLLSSNVYVGTALLNFYAKC 479 (691)
Q Consensus 424 ~~~~p~~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ 479 (691)
........++..+...+...|+ ++.|...++...+. +..+.....+..+...|...
T Consensus 121 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 200 (406)
T 3sf4_A 121 NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLL 200 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHc
Confidence 0001113477788888999999 99999999887653 21023345778889999999
Q ss_pred CCHHHHHHHHHhccc-----CC----HhHHHHHHHHHhcCCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhccc
Q 040394 480 GDAQSARMVFDAMRE-----KN----TVTWSAMIGGYGMQGDGGGSLALFSDMLNEEV-QPN----EVIFTTILSACSHT 545 (691)
Q Consensus 480 g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~ 545 (691)
|++++|...+++..+ ++ ..+|..+...|...|++++|...+++..+... .++ ..++..+...+...
T Consensus 201 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 280 (406)
T 3sf4_A 201 GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL 280 (406)
T ss_dssp TBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHh
Confidence 999999999998764 22 23788899999999999999999999876311 111 45677788899999
Q ss_pred CCHHHHHHHHHHchhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhc
Q 040394 546 GMVGEGWKCFYSMCRDFKFVPS----MKHYVCMVDLLARAGRLEEALEFMENM-------PIEP-DVSLFGAFLHGCGLY 613 (691)
Q Consensus 546 g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~ 613 (691)
|++++|.+.+++......-.++ ..++..+...|...|++++|.+.+++. +..+ ...++..+...+...
T Consensus 281 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 360 (406)
T 3sf4_A 281 QDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVL 360 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHh
Confidence 9999999999987543222222 557888899999999999999998886 1111 123455555555555
Q ss_pred CCH
Q 040394 614 SRF 616 (691)
Q Consensus 614 g~~ 616 (691)
|+.
T Consensus 361 g~~ 363 (406)
T 3sf4_A 361 GLS 363 (406)
T ss_dssp HTT
T ss_pred hHh
Confidence 544
No 64
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.39 E-value=1.7e-10 Score=110.94 Aligned_cols=224 Identities=11% Similarity=0.076 Sum_probs=119.0
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHcc----cCChhHHHHHHHHHHHhCCCChhHHHH
Q 040394 110 DFYSFQVMIRWYFLNDLYKDIVEFYKCMRKRLKEHDNFVFSKVLKACCE----LRDIDEGMKVHCEIVKVGGPDSFVLTG 185 (691)
Q Consensus 110 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 185 (691)
+..++..+...+...|++++|+..|++..+. -+...+..+...+.. .+++++|...|++..+.+ +..++..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~ 79 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHL 79 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHH
Confidence 3445566666666666777776666666652 233455555555555 666666666666666554 4455555
Q ss_pred HHHHhHh----cCChHHHHHHHhccCC-CChhhHHHHHHHHHh----CCChhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 040394 186 LVDMYAK----CRDIGSSRQVFDETLD-KNVVSWTSMIAGYVQ----NDCAQEGLVLFNRMREGFVEGNQITLGSLVTAC 256 (691)
Q Consensus 186 l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~ 256 (691)
+...|.. .+++++|...|++..+ .+..++..+...|.. .+++++|++.|++..+
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~----------------- 142 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD----------------- 142 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-----------------
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh-----------------
Confidence 5555555 5555555555554322 233444444444544 4555555555555444
Q ss_pred HccCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHh----cCC
Q 040394 257 AKLRALHQGKWLHGYILKIGIEINSHLVTALLDMYVK----CGNIRDARSVFDELCS-IDLVSWTAMIVGYTQ----SGY 327 (691)
Q Consensus 257 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~ 327 (691)
.+ +...+..+...|.. .+++++|...|++..+ .+..++..+...|.. .++
T Consensus 143 ------------------~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~ 201 (273)
T 1ouv_A 143 ------------------LN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKN 201 (273)
T ss_dssp ------------------TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCC
T ss_pred ------------------cC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCcc
Confidence 33 23334444444444 4555555555554421 233445555555555 566
Q ss_pred chhHHHHHHHhhHCCCCCcHHHHHHHHHHHhc----CCChhhHHHHHHHHHHhCCC
Q 040394 328 PDKALKLFTDKKWADFFPNHVTIASVLSASAQ----LGNLNMGRMVHSLGIRLGLE 379 (691)
Q Consensus 328 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~ 379 (691)
+++|++.|++..+.+. ...+..+...+.. .++.++|...++...+.++.
T Consensus 202 ~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 202 FKEALARYSKACELEN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 6666666665555432 3444444555555 56666666666666555543
No 65
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.37 E-value=1.1e-11 Score=127.42 Aligned_cols=268 Identities=10% Similarity=0.024 Sum_probs=185.1
Q ss_pred HHhcCCChhhHHHHHHHHHHhCCCch----hHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHH
Q 040394 356 ASAQLGNLNMGRMVHSLGIRLGLEDY----TVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAV 431 (691)
Q Consensus 356 ~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~ 431 (691)
.+...|++++|...++.+.+..+.+. .++..+...|...|++++|...+++..... ... ...+....
T Consensus 57 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------~~~-~~~~~~~~ 127 (411)
T 4a1s_A 57 RLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA--------KSM-NDRLGEAK 127 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------HHT-TCHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------HHc-cCchHHHH
Confidence 33344444444444444444433321 344556666666677766666666543210 000 00122345
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcC----CCCCchhHHHHHHHHHHhcCC-----------------HHHHHHHHH
Q 040394 432 TLVSVISACASLGAVQVGSSLHAYSTKQG----LLSSNVYVGTALLNFYAKCGD-----------------AQSARMVFD 490 (691)
Q Consensus 432 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~ 490 (691)
++..+...+...|+++.|...+++..+.. ..+.....+..+...|...|+ +++|...++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 67788888999999999999998876541 103445678888999999999 999999888
Q ss_pred hccc-----C----CHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhcccCCHHHHHHHHH
Q 040394 491 AMRE-----K----NTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEV-QPN----EVIFTTILSACSHTGMVGEGWKCFY 556 (691)
Q Consensus 491 ~~~~-----~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~A~~~~~ 556 (691)
+..+ . ....+..+...|...|++++|+..+++..+... .++ ...+..+...+...|++++|.+.++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 7653 1 234788889999999999999999999876311 112 1367778889999999999999998
Q ss_pred HchhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-C---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 040394 557 SMCRDFKFVPS----MKHYVCMVDLLARAGRLEEALEFMENM-P---IEPD----VSLFGAFLHGCGLYSRFDLGEVMIK 624 (691)
Q Consensus 557 ~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~ 624 (691)
+......-..+ ..++..+...|...|++++|.+.+++. . ..++ ..++..+...+...|++++|...++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 77543221111 467788899999999999999999887 1 1112 3477888899999999999999999
Q ss_pred HHHhcCCC
Q 040394 625 KMLELHPD 632 (691)
Q Consensus 625 ~~~~~~p~ 632 (691)
+++++.+.
T Consensus 368 ~al~~~~~ 375 (411)
T 4a1s_A 368 QHLQLAXX 375 (411)
T ss_dssp HHHHHCCH
T ss_pred HHHHHHhh
Confidence 99998766
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.32 E-value=2.9e-11 Score=120.08 Aligned_cols=266 Identities=11% Similarity=0.041 Sum_probs=180.2
Q ss_pred HhcCCChhhHHHHHHHHHHhCCCc----hhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCC-CCHH
Q 040394 357 SAQLGNLNMGRMVHSLGIRLGLED----YTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVS-PDAV 431 (691)
Q Consensus 357 ~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~-p~~~ 431 (691)
+...|++++|...++.+.+..+.+ ..++..+...|...|++++|...+++...... .. +.. ....
T Consensus 15 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--------~~--~~~~~~~~ 84 (338)
T 3ro2_A 15 LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLAR--------TI--GDQLGEAK 84 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------HH--TCHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh--------cc--cccHHHHH
Confidence 334444444444444444443332 23455666666677777777666665432100 00 111 1245
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC----chhHHHHHHHHHHhcCC--------------------HHHHHH
Q 040394 432 TLVSVISACASLGAVQVGSSLHAYSTKQGLLSS----NVYVGTALLNFYAKCGD--------------------AQSARM 487 (691)
Q Consensus 432 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~--------------------~~~A~~ 487 (691)
++..+...+...|+++.|...+++..+.....+ ...++..+...|...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 677788888999999999999988765421011 23477788889999999 999998
Q ss_pred HHHhccc-----CC----HhHHHHHHHHHhcCCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhcccCCHHHHHH
Q 040394 488 VFDAMRE-----KN----TVTWSAMIGGYGMQGDGGGSLALFSDMLNEEV-QPN----EVIFTTILSACSHTGMVGEGWK 553 (691)
Q Consensus 488 ~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~A~~ 553 (691)
.+++..+ ++ ...+..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8887653 12 34678888999999999999999998875310 111 2367777788899999999999
Q ss_pred HHHHchhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-C---CCCC----HHHHHHHHHHHHhcCCHHHHHH
Q 040394 554 CFYSMCRDFKFVPS----MKHYVCMVDLLARAGRLEEALEFMENM-P---IEPD----VSLFGAFLHGCGLYSRFDLGEV 621 (691)
Q Consensus 554 ~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~A~~ 621 (691)
.+++......-.++ ..++..+...+...|++++|.+.+++. . ..++ ..++..+...+...|++++|..
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 99877443221222 457778889999999999999999887 1 1112 3477888899999999999999
Q ss_pred HHHHHHhcCCC
Q 040394 622 MIKKMLELHPD 632 (691)
Q Consensus 622 ~~~~~~~~~p~ 632 (691)
.+++++++.+.
T Consensus 325 ~~~~a~~~~~~ 335 (338)
T 3ro2_A 325 FAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHC---
T ss_pred HHHHHHHHHHh
Confidence 99999987765
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.31 E-value=6.3e-12 Score=123.53 Aligned_cols=233 Identities=14% Similarity=0.111 Sum_probs=171.1
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHc-------CCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc-------
Q 040394 429 DAVTLVSVISACASLGAVQVGSSLHAYSTKQ-------GLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE------- 494 (691)
Q Consensus 429 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------- 494 (691)
+..++..+...+...|+++.|..+++.+.+. .. +.....+..+...|...|++++|...+++..+
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDH-PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSS-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 4567888889999999999999999998874 32 55677888899999999999999999988753
Q ss_pred C----CHhHHHHHHHHHhcCCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHchhhc-
Q 040394 495 K----NTVTWSAMIGGYGMQGDGGGSLALFSDMLNE------EVQPN-EVIFTTILSACSHTGMVGEGWKCFYSMCRDF- 562 (691)
Q Consensus 495 ~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~- 562 (691)
+ ....+..+...|...|++++|...+++..+. +-.|+ ...+..+...+...|++++|.+++++.....
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 1 2457888899999999999999999998874 22233 3567777789999999999999999875431
Q ss_pred ----CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-C---------CCCCH-------HHHHHHHHHHHhcCCHHHHH
Q 040394 563 ----KFVPS-MKHYVCMVDLLARAGRLEEALEFMENM-P---------IEPDV-------SLFGAFLHGCGLYSRFDLGE 620 (691)
Q Consensus 563 ----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~---------~~p~~-------~~~~~l~~~~~~~g~~~~A~ 620 (691)
+..|. ..++..+...|...|++++|.+.++++ . ..+.. ..+..+...+...+.+.++.
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 264 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG 264 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 11333 567888999999999999999998887 1 11111 12222333344566777778
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHh
Q 040394 621 VMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQ 662 (691)
Q Consensus 621 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 662 (691)
..+++.....|....++..++.+|.+.|++++|.+.+++.++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 265 GWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888888899899999999999999999999999998876
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.28 E-value=1.9e-10 Score=116.68 Aligned_cols=237 Identities=8% Similarity=-0.070 Sum_probs=121.2
Q ss_pred HHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCC--
Q 040394 386 ALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSP-DAVTLVSVISACASLGAVQVGSSLHAYSTKQGLL-- 462 (691)
Q Consensus 386 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-- 462 (691)
.....+...|++++|...|++....-.. .+-.+ ...++..+...+...|+.+.|...+++..+....
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 177 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIF----------VKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHE 177 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGG----------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhh----------CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc
Confidence 3556677788888888888776432000 00011 2345667777777788888888777776653210
Q ss_pred ---CCchhHHHHHHHHHHhcCCHHHHHHHHHhccc-----CC----HhHHHHHHHHHhcCCChHHHHHHHHHHHHC----
Q 040394 463 ---SSNVYVGTALLNFYAKCGDAQSARMVFDAMRE-----KN----TVTWSAMIGGYGMQGDGGGSLALFSDMLNE---- 526 (691)
Q Consensus 463 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---- 526 (691)
+....+++.+...|...|++++|...+++..+ ++ ..++..+...|...|++++|+..+++..+.
T Consensus 178 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 257 (383)
T 3ulq_A 178 AYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES 257 (383)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 11234556666666777777777766665542 11 124555566666666666666666555541
Q ss_pred CCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH
Q 040394 527 EVQP-NEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENMPIEPDVSLFGA 605 (691)
Q Consensus 527 g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 605 (691)
+..| ...++..+..++...|++++|.+.+++......-..+ +.....+..
T Consensus 258 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------------------------~~~~~~~~~ 308 (383)
T 3ulq_A 258 NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGD-----------------------------VIYLSEFEF 308 (383)
T ss_dssp TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-----------------------------HHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC-----------------------------HHHHHHHHH
Confidence 1112 2233444444555555555555555443221100001 001112333
Q ss_pred HHHHHHhcCC---HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHh
Q 040394 606 FLHGCGLYSR---FDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQ 662 (691)
Q Consensus 606 l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 662 (691)
+...+...|+ +++|..++++. ...|....++..++.+|...|++++|.+.+++..+
T Consensus 309 l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 309 LKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4444445555 44444444443 22223334555566666666666666666665544
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.28 E-value=5.8e-10 Score=109.17 Aligned_cols=212 Identities=9% Similarity=0.019 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHHcCCCCCchhHHHHHHHHHHh-------cCCH-------HHHHHHHHhccc---C-CHhHHHHHHHHHh
Q 040394 447 QVGSSLHAYSTKQGLLSSNVYVGTALLNFYAK-------CGDA-------QSARMVFDAMRE---K-NTVTWSAMIGGYG 508 (691)
Q Consensus 447 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~ 508 (691)
+.|..+|++..+.. |.++..|..++..+.. .|++ ++|..+|++..+ | +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 67778888888876 7788888888777753 4775 889999988764 3 5568888888999
Q ss_pred cCCChHHHHHHHHHHHHCCCCCCH-H-HHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHH-hcCCh
Q 040394 509 MQGDGGGSLALFSDMLNEEVQPNE-V-IFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLA-RAGRL 584 (691)
Q Consensus 509 ~~~~~~~A~~~~~~m~~~g~~p~~-~-~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~-~~g~~ 584 (691)
+.|++++|..+|++..+ +.|+. . .|..+...+.+.|++++|..+|++..+ ..|+ ...|........ ..|++
T Consensus 111 ~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT---STTCCTHHHHHHHHHHHHTSCCH
T ss_pred hcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHcCCH
Confidence 99999999999999987 45543 3 688888888888999999999997743 3343 444443333322 36899
Q ss_pred HHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC-CchhHHHHHHHHHhCCCcHHHHHHHH
Q 040394 585 EEALEFMENM-PI-EPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLEL---HPD-KACYYVLVSNLYASDGRWIRVNQVRE 658 (691)
Q Consensus 585 ~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 658 (691)
++|.++|++. .. +.+...|..++..+.+.|++++|..+|+++++. .|+ +...|..++..+.+.|+.++|..+++
T Consensus 186 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999887 22 335678888888888899999999999999985 453 56678888888888999999999998
Q ss_pred HHHhCCC
Q 040394 659 LMKQRGL 665 (691)
Q Consensus 659 ~~~~~g~ 665 (691)
++.+...
T Consensus 266 ~a~~~~p 272 (308)
T 2ond_A 266 RRFTAFR 272 (308)
T ss_dssp HHHHHTT
T ss_pred HHHHHcc
Confidence 8887544
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.27 E-value=6.5e-11 Score=120.20 Aligned_cols=187 Identities=10% Similarity=-0.037 Sum_probs=119.0
Q ss_pred HHHHhcCCHHHHHHHHHhccc-----C----CHhHHHHHHHHHhcCCChHHHHHHHHHHHHCC--C---CC-CHHHHHHH
Q 040394 474 NFYAKCGDAQSARMVFDAMRE-----K----NTVTWSAMIGGYGMQGDGGGSLALFSDMLNEE--V---QP-NEVIFTTI 538 (691)
Q Consensus 474 ~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g--~---~p-~~~~~~~l 538 (691)
..+...|++++|...|++..+ + ...+|..+...|...|++++|+..+++..+.- . .| ...+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 344455555555555554432 1 12345555566666666666666666555420 0 11 12355556
Q ss_pred HHHhcccCCHHHHHHHHHHchhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-HHHHHHH
Q 040394 539 LSACSHTGMVGEGWKCFYSMCRDFKFVPS----MKHYVCMVDLLARAGRLEEALEFMENM-------PIEPD-VSLFGAF 606 (691)
Q Consensus 539 l~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l 606 (691)
..+|...|++++|.+.+++......-.++ ..++..+...|...|++++|++.+++. +..|+ ..++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 66777777777777777665432111121 246777888888888888888887776 22133 4578888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc-----CCCCchhHHHHHHHHHhCCC---cHHHHHHHHHH
Q 040394 607 LHGCGLYSRFDLGEVMIKKMLEL-----HPDKACYYVLVSNLYASDGR---WIRVNQVRELM 660 (691)
Q Consensus 607 ~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~ 660 (691)
...+...|++++|...++++++. +|.....+..++.+|...|+ +++|..++++.
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 99999999999999999999985 34333446779999999999 77777776654
No 71
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.27 E-value=7.6e-11 Score=127.67 Aligned_cols=161 Identities=14% Similarity=0.166 Sum_probs=127.5
Q ss_pred HhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHH
Q 040394 497 TVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPN-EVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCM 574 (691)
Q Consensus 497 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~l 574 (691)
...|+.|...|.+.|++++|++.|++.++. .|+ ...+..+..++.+.|++++|++.|++.++ +.|+ ...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 345666666677777777777777776663 443 45666677777777777777777776543 4565 6678888
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHH
Q 040394 575 VDLLARAGRLEEALEFMENM-PIEP-DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIR 652 (691)
Q Consensus 575 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 652 (691)
..+|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|...|++++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 88888888888888888887 4445 456889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 040394 653 VNQVRELMKQ 662 (691)
Q Consensus 653 A~~~~~~~~~ 662 (691)
|.+.++++++
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888765
No 72
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.26 E-value=1.8e-10 Score=103.21 Aligned_cols=130 Identities=14% Similarity=0.043 Sum_probs=85.4
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHH
Q 040394 533 VIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENM--PIEPDVSLFGAFLHGC 610 (691)
Q Consensus 533 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~ 610 (691)
..+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++ ..+.+...+..+...+
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 120 (186)
T 3as5_A 43 DVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL 120 (186)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHH
Confidence 34444444444455555555555444322 1112444555555666666666666666655 1234556777777888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCC
Q 040394 611 GLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRG 664 (691)
Q Consensus 611 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 664 (691)
...|++++|...++++.+..|+++..+..++.++...|++++|.+.+++..+..
T Consensus 121 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 121 DNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 888888888888888888888888888888888888888888888888877643
No 73
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.24 E-value=5.8e-10 Score=99.87 Aligned_cols=162 Identities=10% Similarity=0.018 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCC
Q 040394 347 HVTIASVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNV 426 (691)
Q Consensus 347 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~ 426 (691)
...|..+...+...|++++|...++.+.+..|.+..++..+..+|.+.|++++|...+...... .
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---------------~ 69 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---------------D 69 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------C
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---------------C
Confidence 3445555555555555555555555555555555555566666666666666666666554432 1
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHhHHHHH
Q 040394 427 SPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE---KNTVTWSAM 503 (691)
Q Consensus 427 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 503 (691)
+.+...+..+...+...++.+.+...+....+.. |.+...+..+...|.+.|++++|+..|++..+ .+..+|..+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 147 (184)
T 3vtx_A 70 TTSAEAYYILGSANFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSI 147 (184)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHH
Confidence 2233444455555556666666666666666655 55666666666666666666666666666553 245566666
Q ss_pred HHHHhcCCChHHHHHHHHHHHH
Q 040394 504 IGGYGMQGDGGGSLALFSDMLN 525 (691)
Q Consensus 504 i~~~~~~~~~~~A~~~~~~m~~ 525 (691)
...|.+.|++++|++.|++..+
T Consensus 148 g~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 148 GLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHh
Confidence 6666666666666666666665
No 74
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.23 E-value=2.1e-09 Score=105.19 Aligned_cols=180 Identities=12% Similarity=0.047 Sum_probs=114.4
Q ss_pred hhHHHHHHHHHH-hCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCC-HH-HHHHHHHHH
Q 040394 364 NMGRMVHSLGIR-LGLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPD-AV-TLVSVISAC 440 (691)
Q Consensus 364 ~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~-~~-~~~~ll~~~ 440 (691)
++|..+++.+.+ ..+.+...+..++..+.+.|++++|..+|++..+. .|+ .. .|..+...+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~~~~~~~ 144 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI----------------EDIDPTLVYIQYMKFA 144 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----------------SSSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----------------cccCccHHHHHHHHHH
Confidence 455555555555 34445555566666666666666666666665532 232 22 566666666
Q ss_pred hccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHH-hcCCHHHHHHHHHhccc--C-CHhHHHHHHHHHhcCCChHHH
Q 040394 441 ASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYA-KCGDAQSARMVFDAMRE--K-NTVTWSAMIGGYGMQGDGGGS 516 (691)
Q Consensus 441 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A 516 (691)
.+.|+++.|..+|+...+.. |.+...|........ ..|++++|..+|+...+ | +...|..++..+.+.|++++|
T Consensus 145 ~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A 222 (308)
T 2ond_A 145 RRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNT 222 (308)
T ss_dssp HHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 66777777777777776655 444555544433322 25777788777777653 2 566777777777778888888
Q ss_pred HHHHHHHHHCC-CCCC--HHHHHHHHHHhcccCCHHHHHHHHHHchhh
Q 040394 517 LALFSDMLNEE-VQPN--EVIFTTILSACSHTGMVGEGWKCFYSMCRD 561 (691)
Q Consensus 517 ~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 561 (691)
..+|++..+.. +.|+ ...|..++......|+.+.|..+++++.+.
T Consensus 223 ~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 223 RVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888887753 3543 456666777777778888888888777544
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.22 E-value=1.6e-09 Score=109.56 Aligned_cols=196 Identities=9% Similarity=0.062 Sum_probs=96.8
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCC-----CCchhHHHHHHHHHHhcCCHHHHHHHHHhccc-----CC----H
Q 040394 432 TLVSVISACASLGAVQVGSSLHAYSTKQGLL-----SSNVYVGTALLNFYAKCGDAQSARMVFDAMRE-----KN----T 497 (691)
Q Consensus 432 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~ 497 (691)
++..+...+...|+++.|...+++..+.... +....+++.+...|...|++++|...|++..+ ++ .
T Consensus 143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 222 (378)
T 3q15_A 143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIA 222 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4555556666666666666666655442110 01234455666666677777777666665442 11 2
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC---hhH
Q 040394 498 VTWSAMIGGYGMQGDGGGSLALFSDMLNE----EVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS---MKH 570 (691)
Q Consensus 498 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~---~~~ 570 (691)
.++..+...|...|++++|+..+++..+. +.+....++..+..++.+.|++++|...+++......-.++ ...
T Consensus 223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 302 (378)
T 3q15_A 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL 302 (378)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34555666666666666666666665541 11112344455555555666666666666554333221111 223
Q ss_pred HHHHHHHHHhcCC---hHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040394 571 YVCMVDLLARAGR---LEEALEFMENMPIEPDV-SLFGAFLHGCGLYSRFDLGEVMIKKML 627 (691)
Q Consensus 571 ~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (691)
+..+...+...|+ .++|+..+++.+..|+. ..+..+...|...|++++|...++++.
T Consensus 303 ~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 303 FLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3333344444444 45555555544322222 233344444444555555555554444
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.22 E-value=7.9e-10 Score=102.93 Aligned_cols=205 Identities=8% Similarity=0.039 Sum_probs=154.8
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CHhHHHHH
Q 040394 427 SPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE--K-NTVTWSAM 503 (691)
Q Consensus 427 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l 503 (691)
..|+..+......+...|++++|...|+...+... +++...+..+...+...|++++|...|++..+ | +...|..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN-NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 34667888888899999999999999999998873 37777777789999999999999999998774 3 45678889
Q ss_pred HHHHhcCCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC---hhHHH
Q 040394 504 IGGYGMQGDGGGSLALFSDMLNEEVQPN-E-------VIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS---MKHYV 572 (691)
Q Consensus 504 i~~~~~~~~~~~A~~~~~~m~~~g~~p~-~-------~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~---~~~~~ 572 (691)
...|...|++++|+..+++..+. .|+ . ..|..+-..+...|++++|.+.|++.. .+.|+ ...+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~ 157 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALY 157 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHH
Confidence 99999999999999999999885 444 3 346666667788899999999999664 45665 45677
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 040394 573 CMVDLLARAGRLEEALEFMENM-P-IEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLY 644 (691)
Q Consensus 573 ~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 644 (691)
.+..+|...|+. .++++ . ...+...+.... ....+.+++|...+++++++.|+++.+...+..+.
T Consensus 158 ~l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 158 SLGVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 777777665543 22222 1 122333443332 33456789999999999999999988888777664
No 77
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.20 E-value=6.5e-10 Score=115.76 Aligned_cols=208 Identities=13% Similarity=-0.019 Sum_probs=147.8
Q ss_pred chhHHHHHHHhhHCCCCCcHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHh
Q 040394 328 PDKALKLFTDKKWADFFPNHVTIASVLSASAQLGNL-NMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFET 406 (691)
Q Consensus 328 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 406 (691)
++++++.+++.... ...+...+..+...+...|++ ++|...++.+.+..+.+..++..+..+|.+.|++++|...|++
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45666666655443 223567777777788888998 9999999999888888888999999999999999999999999
Q ss_pred CCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhcc---------CcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHH
Q 040394 407 TSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASL---------GAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYA 477 (691)
Q Consensus 407 ~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 477 (691)
..+. .|+...+..+...+... |++++|...+++..+.. |.+...+..+...|.
T Consensus 163 al~~----------------~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~ 224 (474)
T 4abn_A 163 ALTH----------------CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYL 224 (474)
T ss_dssp HHTT----------------CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHhh----------------CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 8754 57778888888888888 89999999999988887 677788888888777
Q ss_pred hc--------CCHHHHHHHHHhccc--C----CHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Q 040394 478 KC--------GDAQSARMVFDAMRE--K----NTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACS 543 (691)
Q Consensus 478 ~~--------g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 543 (691)
.. |++++|...|++..+ | +...|..+...|...|++++|+..|++..+.. +-+...+..+..++.
T Consensus 225 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~ 303 (474)
T 4abn_A 225 SLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLE 303 (474)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 77 667777666666543 2 44455556666666666666666666655531 112233444444444
Q ss_pred ccCCHHHHHHHH
Q 040394 544 HTGMVGEGWKCF 555 (691)
Q Consensus 544 ~~g~~~~A~~~~ 555 (691)
..|++++|.+.+
T Consensus 304 ~lg~~~eAi~~~ 315 (474)
T 4abn_A 304 FLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 555555554433
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.20 E-value=5.6e-09 Score=105.40 Aligned_cols=264 Identities=9% Similarity=-0.021 Sum_probs=188.4
Q ss_pred HHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 040394 385 NALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDA----VTLVSVISACASLGAVQVGSSLHAYSTKQG 460 (691)
Q Consensus 385 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 460 (691)
......+...|++++|...+++..... ...+. .++..+...+...|+++.|...+++..+..
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~--------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 83 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEEL--------------PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA 83 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC--------------CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcC--------------CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 444556677899999988887754321 01111 245666677888999999999999877532
Q ss_pred CCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHhccc----------C-CHhHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 040394 461 LLSSN----VYVGTALLNFYAKCGDAQSARMVFDAMRE----------K-NTVTWSAMIGGYGMQGDGGGSLALFSDMLN 525 (691)
Q Consensus 461 ~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 525 (691)
....+ ...+..+...+...|++++|...+++..+ + ....+..+...+...|++++|...+++..+
T Consensus 84 ~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 163 (373)
T 1hz4_A 84 RQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE 163 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 10111 23356678889999999999999987653 1 123566788889999999999999999886
Q ss_pred CCCC--C--CHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHH-----HHHHHHHhcCChHHHHHHHHhC-C
Q 040394 526 EEVQ--P--NEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYV-----CMVDLLARAGRLEEALEFMENM-P 595 (691)
Q Consensus 526 ~g~~--p--~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~~-~ 595 (691)
.... + ...++..+...+...|++++|...+++......-......+. ..+..+...|++++|.+.+++. .
T Consensus 164 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 243 (373)
T 1hz4_A 164 VLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK 243 (373)
T ss_dssp HTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred HhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 4221 1 235677777788999999999999998754322111111121 2334577999999999999998 2
Q ss_pred CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------chhHHHHHHHHHhCCCcHHHHHHHHHHHh
Q 040394 596 IEPD-----VSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDK------ACYYVLVSNLYASDGRWIRVNQVRELMKQ 662 (691)
Q Consensus 596 ~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 662 (691)
..|. ...+..+...+...|++++|...++++.+..+.. ...+..++.++...|++++|.+.+++..+
T Consensus 244 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 244 PEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp CCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2222 2256677888899999999999999998753321 23677889999999999999999988765
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.18 E-value=4.6e-10 Score=104.52 Aligned_cols=190 Identities=11% Similarity=-0.038 Sum_probs=117.2
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhccc----CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCH-HHHHH
Q 040394 463 SSNVYVGTALLNFYAKCGDAQSARMVFDAMRE----KNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNE-VIFTT 537 (691)
Q Consensus 463 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ 537 (691)
+.++..+......+...|++++|...|++..+ ++...+..+..++...|++++|+..+++..+. .|+. ..+..
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~ 81 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIG 81 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHH
Confidence 34556666677777777777777777776553 45555655677777777777777777777763 4433 45555
Q ss_pred HHHHhcccCCHHHHHHHHHHchhhcCCCCC-h-------hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHHH
Q 040394 538 ILSACSHTGMVGEGWKCFYSMCRDFKFVPS-M-------KHYVCMVDLLARAGRLEEALEFMENM-PIEPD---VSLFGA 605 (691)
Q Consensus 538 ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~-------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ 605 (691)
+..++...|++++|.+.+++..+. .|+ . ..|..+...+...|++++|++.+++. ...|+ ...|..
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 158 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYS 158 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHH
Confidence 666677777777777777766433 333 2 34555666666667777777766665 44554 235555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCC
Q 040394 606 FLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRG 664 (691)
Q Consensus 606 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 664 (691)
+...+.. .+...++++..+.+.+...+... .....|.+++|...+++..+..
T Consensus 159 l~~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 159 LGVLFYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcC
Confidence 5555533 33444555555555544333322 2344556699999999998754
No 80
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.18 E-value=7.9e-11 Score=115.62 Aligned_cols=246 Identities=11% Similarity=-0.012 Sum_probs=166.0
Q ss_pred chhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 040394 380 DYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQ 459 (691)
Q Consensus 380 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 459 (691)
...++..+...+...|++++|..+++++.+.-. .......+....++..+...+...|++++|...++...+.
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~-------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 98 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLE-------KTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI 98 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------HHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-------HHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 455567777778888888888887777653100 0000001223456788888999999999999999988765
Q ss_pred ------CCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc-------C----CHhHHHHHHHHHhcCCChHHHHHHHHH
Q 040394 460 ------GLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE-------K----NTVTWSAMIGGYGMQGDGGGSLALFSD 522 (691)
Q Consensus 460 ------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~A~~~~~~ 522 (691)
+..+.....+..+...|...|++++|...+++..+ + ....+..+...+...|++++|+.++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 178 (311)
T 3nf1_A 99 REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR 178 (311)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 22144567888899999999999999999998763 1 244688889999999999999999999
Q ss_pred HHHC------CCCCCH-HHHHHHHHHhcccCCHHHHHHHHHHchhhc------CCCCChh-H------HHHHHHHHHhcC
Q 040394 523 MLNE------EVQPNE-VIFTTILSACSHTGMVGEGWKCFYSMCRDF------KFVPSMK-H------YVCMVDLLARAG 582 (691)
Q Consensus 523 m~~~------g~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~------~~~p~~~-~------~~~li~~~~~~g 582 (691)
+.+. +-.|+. .++..+..++...|++++|.+.++++.... ...+... . +..+...+...+
T Consensus 179 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (311)
T 3nf1_A 179 ALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGT 258 (311)
T ss_dssp HHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------C
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHH
Confidence 8874 223333 467778889999999999999999885421 1222211 1 222223334445
Q ss_pred ChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 040394 583 RLEEALEFMENMP-IEP-DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPD 632 (691)
Q Consensus 583 ~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 632 (691)
.+.+|...++... ..| +..++..+...|...|++++|...+++++++.|+
T Consensus 259 ~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 259 SFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 5555666666662 333 3457888999999999999999999999988775
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.17 E-value=2.6e-09 Score=108.07 Aligned_cols=226 Identities=10% Similarity=-0.017 Sum_probs=170.4
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCCC----CCchhHHHHHHHHHHhcCCHHHHHHHHHhccc-----CC-----HhHHH
Q 040394 436 VISACASLGAVQVGSSLHAYSTKQGLL----SSNVYVGTALLNFYAKCGDAQSARMVFDAMRE-----KN-----TVTWS 501 (691)
Q Consensus 436 ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~ 501 (691)
....+...|+++.|...+++..+.... +....++..+...|...|+++.|...+++..+ ++ ..+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 344567899999999999998764210 12356778889999999999999999987653 12 34788
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHchhhcC--CCCC-hhHHHH
Q 040394 502 AMIGGYGMQGDGGGSLALFSDMLNE----EVQP-NEVIFTTILSACSHTGMVGEGWKCFYSMCRDFK--FVPS-MKHYVC 573 (691)
Q Consensus 502 ~li~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~--~~p~-~~~~~~ 573 (691)
.+...|...|++++|.+.+++..+. +-.+ ...++..+..++...|++++|.+.+++...-.. ..|. ..++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 8999999999999999999988763 1111 124667777889999999999999998754111 2233 667888
Q ss_pred HHHHHHhcCChHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 040394 574 MVDLLARAGRLEEALEFMENM----PI--EPD-VSLFGAFLHGCGLYSR---FDLGEVMIKKMLELHPDKACYYVLVSNL 643 (691)
Q Consensus 574 li~~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 643 (691)
+...+.+.|++++|.+.+++. .. .|. ...+..+...+...++ +.+|...+++. ...|.....+..++.+
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHH
Confidence 999999999999999999887 11 222 2345566666777788 77888777762 2334445677899999
Q ss_pred HHhCCCcHHHHHHHHHHHh
Q 040394 644 YASDGRWIRVNQVRELMKQ 662 (691)
Q Consensus 644 ~~~~g~~~~A~~~~~~~~~ 662 (691)
|...|++++|.+.+++..+
T Consensus 346 y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999998875
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.16 E-value=2e-09 Score=96.29 Aligned_cols=168 Identities=13% Similarity=0.019 Sum_probs=137.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 040394 466 VYVGTALLNFYAKCGDAQSARMVFDAMRE---KNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSAC 542 (691)
Q Consensus 466 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 542 (691)
...+..+...+...|++++|...++++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 44566677788888899999998888774 366778888888899999999999999988753 44567777888888
Q ss_pred cccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHH
Q 040394 543 SHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENM-P-IEPDVSLFGAFLHGCGLYSRFDLGE 620 (691)
Q Consensus 543 ~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~ 620 (691)
...|++++|.+.++++... .+.+...+..+...+...|++++|.+.+++. . .+.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 8999999999999987544 2334677888889999999999999999887 2 3345678899999999999999999
Q ss_pred HHHHHHHhcCCCCchh
Q 040394 621 VMIKKMLELHPDKACY 636 (691)
Q Consensus 621 ~~~~~~~~~~p~~~~~ 636 (691)
..++++.+..|+++..
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999988886543
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.10 E-value=2.7e-08 Score=100.41 Aligned_cols=257 Identities=7% Similarity=-0.070 Sum_probs=148.2
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCcc----hHHHHHHHHcccCChhHHHHHHHHHHHhCCC--C----hhHHHHHH
Q 040394 118 IRWYFLNDLYKDIVEFYKCMRKRLKEHDNF----VFSKVLKACCELRDIDEGMKVHCEIVKVGGP--D----SFVLTGLV 187 (691)
Q Consensus 118 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~----~~~~~~l~ 187 (691)
...+...|++++|...+++........+.. ++..+...+...|++++|...+++.....+. + ..++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 334456677777777777766543111111 3444445566677777777777776653311 1 23355666
Q ss_pred HHhHhcCChHHHHHHHhccCC----------C-ChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCC--C--ChhhHHHH
Q 040394 188 DMYAKCRDIGSSRQVFDETLD----------K-NVVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVE--G--NQITLGSL 252 (691)
Q Consensus 188 ~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p--~~~t~~~l 252 (691)
..+...|++++|...+++... | ....+..+...+...|++++|...+++....... + ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 677777777777777765421 1 1234556667777888888888888777543211 1 22456666
Q ss_pred HHHHHccCChhhHHHHHHHHHHHCCCCch-HHHH-----HHHHHHHhcCCHHHHHHHHHhcCCCC-------hhHHHHHH
Q 040394 253 VTACAKLRALHQGKWLHGYILKIGIEINS-HLVT-----ALLDMYVKCGNIRDARSVFDELCSID-------LVSWTAMI 319 (691)
Q Consensus 253 i~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li 319 (691)
...+...|++++|...++........++. ..+. ..+..+...|++++|...+++...+. ...+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 66777788888888888777654222211 1111 23344667888888888888774322 11355666
Q ss_pred HHHHhcCCchhHHHHHHHhhHC----CCCCcHH-HHHHHHHHHhcCCChhhHHHHHHHHH
Q 040394 320 VGYTQSGYPDKALKLFTDKKWA----DFFPNHV-TIASVLSASAQLGNLNMGRMVHSLGI 374 (691)
Q Consensus 320 ~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~ 374 (691)
..+...|++++|.+.+++.... |..++.. .+..+..++...|+.++|...+....
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 7777788888888777766432 2111221 33333444555555555555554443
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.07 E-value=9.5e-10 Score=106.04 Aligned_cols=221 Identities=12% Similarity=0.109 Sum_probs=151.6
Q ss_pred ccCcHHHHHHHHHHHHH-------cCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc-------C----CHhHHHHH
Q 040394 442 SLGAVQVGSSLHAYSTK-------QGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE-------K----NTVTWSAM 503 (691)
Q Consensus 442 ~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l 503 (691)
..|+++.|...+++..+ ... +....++..+...|...|++++|...+++..+ + ...+|..+
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDH-PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSS-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 34555556655555443 232 44567788899999999999999999987652 1 24578888
Q ss_pred HHHHhcCCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHchhhc-----CCCCC-hhH
Q 040394 504 IGGYGMQGDGGGSLALFSDMLNE------EVQPN-EVIFTTILSACSHTGMVGEGWKCFYSMCRDF-----KFVPS-MKH 570 (691)
Q Consensus 504 i~~~~~~~~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~-----~~~p~-~~~ 570 (691)
...|...|++++|...+++..+. .-.|+ ..++..+...+...|++++|...+++..... +..|+ ..+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999988764 11232 4567777888999999999999998875431 11333 567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-C---------CCCCH-HHHHHHHHHHHhcCC------HHHHHHHHHHHHhcCCCC
Q 040394 571 YVCMVDLLARAGRLEEALEFMENM-P---------IEPDV-SLFGAFLHGCGLYSR------FDLGEVMIKKMLELHPDK 633 (691)
Q Consensus 571 ~~~li~~~~~~g~~~~A~~~~~~~-~---------~~p~~-~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~p~~ 633 (691)
+..+...|.+.|++++|.+.+++. . ..+.. ..|..+.......+. +..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888899999999999999998877 1 12222 344444433333222 333333343333345666
Q ss_pred chhHHHHHHHHHhCCCcHHHHHHHHHHHhC
Q 040394 634 ACYYVLVSNLYASDGRWIRVNQVRELMKQR 663 (691)
Q Consensus 634 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 663 (691)
..++..++.+|...|++++|.+.+++.++.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 778899999999999999999999988763
No 85
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.00 E-value=2.8e-08 Score=92.00 Aligned_cols=182 Identities=13% Similarity=0.005 Sum_probs=120.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccc--CC----HhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHH----HH
Q 040394 466 VYVGTALLNFYAKCGDAQSARMVFDAMRE--KN----TVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEV----IF 535 (691)
Q Consensus 466 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~----~~ 535 (691)
...+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|+++.+. .|+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 34455566778888899999888888774 32 246777788888888888888888888874 34321 23
Q ss_pred HHHHHHhcc------------------cCCHHHHHHHHHHchhhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 040394 536 TTILSACSH------------------TGMVGEGWKCFYSMCRDFKFVPSM-KHYVCMVDLLARAGRLEEALEFMENMPI 596 (691)
Q Consensus 536 ~~ll~~~~~------------------~g~~~~A~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~ 596 (691)
..+..++.. .|++++|...|+++++ ..|+. ..+...... +......
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~~P~~~~a~~a~~~l----~~~~~~~-------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR---GYPNSQYTTDATKRL----VFLKDRL-------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHT---TCTTCTTHHHHHHHH----HHHHHHH--------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH---HCcCChhHHHHHHHH----HHHHHHH--------
Confidence 333333332 3456666666665532 23332 111111100 0000000
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHhCCCcHHHHHHHHHHHhCCCcc
Q 040394 597 EPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKA---CYYVLVSNLYASDGRWIRVNQVRELMKQRGLSK 667 (691)
Q Consensus 597 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 667 (691)
......+...+.+.|++++|+..++++++..|+++ ..+..++.+|.+.|++++|.+.++.+...+...
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 00113456678899999999999999999999976 568899999999999999999999998876543
No 86
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.97 E-value=1.3e-08 Score=110.36 Aligned_cols=156 Identities=7% Similarity=0.018 Sum_probs=91.7
Q ss_pred hhhHHHHHHhcCCChHHHHHHhccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHcc
Q 040394 82 CNTKLVSMYGSFGHVKYARSVFDSMPN---PDFYSFQVMIRWYFLNDLYKDIVEFYKCMRKRLKEHDNFVFSKVLKACCE 158 (691)
Q Consensus 82 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 158 (691)
.++.+..+|.+.|++++|++.|++..+ .+..+|+.+..+|.+.|++++|+..|++..+.. +-+...|..+..++..
T Consensus 11 al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l~~ 89 (723)
T 4gyw_A 11 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKE 89 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 566666666666666666666665432 234456666666666666666666666665542 2234556666666666
Q ss_pred cCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhccCC---CChhhHHHHHHHHHhCCChhHHHHHHH
Q 040394 159 LRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDETLD---KNVVSWTSMIAGYVQNDCAQEGLVLFN 235 (691)
Q Consensus 159 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 235 (691)
.|++++|.+.|++.++..+.+..+|+.+..+|.+.|++++|++.|++..+ .+...|..+...+...|++++|.+.++
T Consensus 90 ~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~ 169 (723)
T 4gyw_A 90 MQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMK 169 (723)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHH
Confidence 66666666666666666555666666666666666666666666655422 234455556666666666666666555
Q ss_pred HHH
Q 040394 236 RMR 238 (691)
Q Consensus 236 ~m~ 238 (691)
+..
T Consensus 170 kal 172 (723)
T 4gyw_A 170 KLV 172 (723)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 87
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.97 E-value=1.3e-08 Score=85.18 Aligned_cols=126 Identities=14% Similarity=0.119 Sum_probs=85.3
Q ss_pred HHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhc
Q 040394 536 TTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENM-P-IEPDVSLFGAFLHGCGLY 613 (691)
Q Consensus 536 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~ 613 (691)
..+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|.+.++++ . .+.+...+..+...+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 33444455555555555555555322 1122445555566666666666666666665 1 233456677777788888
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhC
Q 040394 614 SRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQR 663 (691)
Q Consensus 614 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 663 (691)
|++++|...++++.+..|+++..+..++.++...|++++|.+.++++.+.
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 88888888888888888888888888888888888888888888887764
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.97 E-value=5.7e-09 Score=101.12 Aligned_cols=185 Identities=10% Similarity=-0.014 Sum_probs=97.3
Q ss_pred HHhcCCHHHHHHHHHhccc-----CC----HhHHHHHHHHHhcCCChHHHHHHHHHHHHCCC---CCC--HHHHHHHHHH
Q 040394 476 YAKCGDAQSARMVFDAMRE-----KN----TVTWSAMIGGYGMQGDGGGSLALFSDMLNEEV---QPN--EVIFTTILSA 541 (691)
Q Consensus 476 ~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~---~p~--~~~~~~ll~~ 541 (691)
|...|++++|...|++..+ .+ ..+|+.+...|...|++++|+..+++..+... .+. ..+++.+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4445555555555544332 01 23555555566666666666666555544210 000 2345555556
Q ss_pred hccc-CCHHHHHHHHHHchhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---H-----HHHHHHH
Q 040394 542 CSHT-GMVGEGWKCFYSMCRDFKFVPS----MKHYVCMVDLLARAGRLEEALEFMENM-PIEPD---V-----SLFGAFL 607 (691)
Q Consensus 542 ~~~~-g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~-----~~~~~l~ 607 (691)
|... |++++|+..|++..+-..-..+ ..++..+...|.+.|++++|++.+++. ...|+ . ..|..+.
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 6664 7777777776655332110001 235666677777777777777777776 22221 1 1455666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchh-----HHHHHHHHH--hCCCcHHHHHHHHHH
Q 040394 608 HGCGLYSRFDLGEVMIKKMLELHPDKACY-----YVLVSNLYA--SDGRWIRVNQVRELM 660 (691)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~~ 660 (691)
.++...|++++|...+++++++.|+.... +..++..+. ..+++++|...++++
T Consensus 207 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 66777777777777777777777765432 233444443 345677776666544
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.96 E-value=5.1e-08 Score=92.26 Aligned_cols=181 Identities=10% Similarity=0.052 Sum_probs=117.7
Q ss_pred HHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC-----CHhHHHHHHHHHhcCCChHHHHHHHHHH
Q 040394 449 GSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMREK-----NTVTWSAMIGGYGMQGDGGGSLALFSDM 523 (691)
Q Consensus 449 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m 523 (691)
+...+++..+.+ +++......+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 a~~~l~~l~~~~--~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDK--QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTTS--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 445555555444 344444456667777777777777777776432 3456666777888888888888888888
Q ss_pred HHCCCCC-----CHHHHHHHHHH--hcc--cCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 040394 524 LNEEVQP-----NEVIFTTILSA--CSH--TGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENM 594 (691)
Q Consensus 524 ~~~g~~p-----~~~~~~~ll~~--~~~--~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 594 (691)
.+ ..| +..+...+..+ ... .+++.+|..+|+++... .|+..+...+..++.+.|++++|.+.++.+
T Consensus 163 ~~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 163 TN--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HH--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred Hh--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77 356 35555555554 222 33788888888887433 344333334444788888888888887765
Q ss_pred -CC----------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHH
Q 040394 595 -PI----------EP-DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYV 638 (691)
Q Consensus 595 -~~----------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 638 (691)
.. .| |..+...++......|+ .|.++++++.+..|+++.+..
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 21 24 44555455555556676 889999999999999876554
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.96 E-value=1.3e-08 Score=96.79 Aligned_cols=184 Identities=10% Similarity=-0.021 Sum_probs=125.6
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-C---HhHHHHHHHHHhcCCChHHHHHHHHHHHHCCC-CCC-HHH
Q 040394 463 SSNVYVGTALLNFYAKCGDAQSARMVFDAMRE--K-N---TVTWSAMIGGYGMQGDGGGSLALFSDMLNEEV-QPN-EVI 534 (691)
Q Consensus 463 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~-~~~ 534 (691)
+.+...+-.+...+.+.|++++|...|+.+.+ | + ...+..+..+|.+.|++++|+..|++..+... .|. ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 45566666777778888888888888887764 2 3 45677777778888888888888888877421 112 234
Q ss_pred HHHHHHHhcc--------cCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH
Q 040394 535 FTTILSACSH--------TGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEFMENMPIEPDVSLFGA 605 (691)
Q Consensus 535 ~~~ll~~~~~--------~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 605 (691)
+..+..++.. .|++++|...|++..+. .|+ ......+.......+.. ...+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~ 153 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYE 153 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHH
Confidence 5555556666 77778888877776544 343 22222211111100000 012456
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHhC----------CCcHHHHHHHHHHHhCC
Q 040394 606 FLHGCGLYSRFDLGEVMIKKMLELHPDKA---CYYVLVSNLYASD----------GRWIRVNQVRELMKQRG 664 (691)
Q Consensus 606 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~g 664 (691)
+...+...|++++|+..++++++..|+++ ..+..++.+|... |++++|...++++++..
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 77889999999999999999999999854 5788899999876 89999999999998754
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.96 E-value=1.5e-08 Score=98.11 Aligned_cols=205 Identities=6% Similarity=-0.056 Sum_probs=149.6
Q ss_pred HHHHhccCcHHHHHHHHHHHHHc----CCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC-----C----HhHHHHH
Q 040394 437 ISACASLGAVQVGSSLHAYSTKQ----GLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMREK-----N----TVTWSAM 503 (691)
Q Consensus 437 l~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~l 503 (691)
...+...|++++|...+.+..+. +..+....+++.+...|.+.|++++|...+++..+- + ..+|+.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44677889999999999887654 320112568889999999999999999999887641 2 3578889
Q ss_pred HHHHhcC-CChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCCh-----hHHH
Q 040394 504 IGGYGMQ-GDGGGSLALFSDMLNEEVQ-PN----EVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSM-----KHYV 572 (691)
Q Consensus 504 i~~~~~~-~~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-----~~~~ 572 (691)
...|... |++++|+..|++..+.... .+ ..++..+...+...|++++|+..|++......-.+.. ..+.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 9999996 9999999999998873111 01 3467788889999999999999999885432111221 1567
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCCCHH------HHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 040394 573 CMVDLLARAGRLEEALEFMENM-PIEPDVS------LFGAFLHGCG--LYSRFDLGEVMIKKMLELHPDKACYYVLVS 641 (691)
Q Consensus 573 ~li~~~~~~g~~~~A~~~~~~~-~~~p~~~------~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 641 (691)
.+..++...|++++|+..+++. ...|+.. .+..++.++. ..+++++|...++++..++|.+...+..+-
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k 281 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIK 281 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHH
Confidence 7888899999999999999998 5555432 3444555554 457799999999888888887655444443
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.94 E-value=2.6e-08 Score=94.79 Aligned_cols=203 Identities=12% Similarity=0.062 Sum_probs=147.9
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-C---H
Q 040394 427 SPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSN---VYVGTALLNFYAKCGDAQSARMVFDAMRE--K-N---T 497 (691)
Q Consensus 427 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~ 497 (691)
+.+...+..+...+.+.|++++|...|+.+.+.. |.+ ...+..+..+|.+.|++++|...|+...+ | + .
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 3456777888888999999999999999999886 455 67788899999999999999999999875 3 1 3
Q ss_pred hHHHHHHHHHhc--------CCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCCh
Q 040394 498 VTWSAMIGGYGM--------QGDGGGSLALFSDMLNEEVQPNEV-IFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSM 568 (691)
Q Consensus 498 ~~~~~li~~~~~--------~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~ 568 (691)
..+..+..++.. .|++++|+..|++..+. .|+.. .... ...+..+... -.
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a--------------~~~~~~~~~~-----~~ 148 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDA--------------TQKIRELRAK-----LA 148 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHH--------------HHHHHHHHHH-----HH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHH--------------HHHHHHHHHH-----HH
Confidence 467778888888 99999999999999985 45432 1111 1111111000 01
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCC
Q 040394 569 KHYVCMVDLLARAGRLEEALEFMENM-PIEPD----VSLFGAFLHGCGLY----------SRFDLGEVMIKKMLELHPDK 633 (691)
Q Consensus 569 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~ 633 (691)
..+..+...|.+.|++++|+..|+++ ...|+ ...+..+..++... |++++|...++++++..|++
T Consensus 149 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 149 RKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 22456778888999999999998887 33333 34677777777755 89999999999999999998
Q ss_pred chh---HHHHHHHHHhCCCcHH
Q 040394 634 ACY---YVLVSNLYASDGRWIR 652 (691)
Q Consensus 634 ~~~---~~~l~~~~~~~g~~~~ 652 (691)
+.. ...+..++...|++++
T Consensus 229 ~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 229 PLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp THHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHhhh
Confidence 643 4445555555554443
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.94 E-value=7e-08 Score=91.32 Aligned_cols=239 Identities=9% Similarity=0.021 Sum_probs=167.1
Q ss_pred HHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhH
Q 040394 389 DMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYV 468 (691)
Q Consensus 389 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 468 (691)
+-..-.|.+..++.-...+... .++ ....-+.+++...|+.+.. ... +|....
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~~----------------~~~-~~~~~~~Rs~iAlg~~~~~---------~~~-~~~~~a 73 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSKV----------------TDN-TLLFYKAKTLLALGQYQSQ---------DPT-SKLGKV 73 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSCC----------------CCH-HHHHHHHHHHHHTTCCCCC---------CSS-STTHHH
T ss_pred HHHHHhhHHHHHHHHHHhcCcc----------------chH-HHHHHHHHHHHHcCCCccC---------CCC-CHHHHH
Confidence 3445568888887755554322 122 2333345666666665421 111 344334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccc---CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcc
Q 040394 469 GTALLNFYAKCGDAQSARMVFDAMRE---KNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQP-NEVIFTTILSACSH 544 (691)
Q Consensus 469 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~ 544 (691)
+..+...+ ..+ |...|++..+ ++..++..+..++...|++++|++++.+.+..|-.+ +...+...+..+.+
T Consensus 74 ~~~la~~~-~~~----a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~ 148 (310)
T 3mv2_B 74 LDLYVQFL-DTK----NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALL 148 (310)
T ss_dssp HHHHHHHH-TTT----CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-ccc----HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH
Confidence 44444433 322 7778887663 455666788899999999999999999987765323 44677788889999
Q ss_pred cCCHHHHHHHHHHchhhcCCCC-----ChhHHHHHHHH--HHh--cCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcC
Q 040394 545 TGMVGEGWKCFYSMCRDFKFVP-----SMKHYVCMVDL--LAR--AGRLEEALEFMENM-PIEPDVSLFGAFLHGCGLYS 614 (691)
Q Consensus 545 ~g~~~~A~~~~~~m~~~~~~~p-----~~~~~~~li~~--~~~--~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g 614 (691)
.|+.+.|.+.+++|. . ..| +..+...|..+ ... .++.++|..+|+++ ...|+..+-..++.++.+.|
T Consensus 149 ~~r~d~A~k~l~~~~-~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g 225 (310)
T 3mv2_B 149 NNNVSTASTIFDNYT-N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQR 225 (310)
T ss_dssp TTCHHHHHHHHHHHH-H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHH-h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcC
Confidence 999999999999994 3 466 34555555555 333 34999999999999 45566444445555888999
Q ss_pred CHHHHHHHHHHHHhc----------CCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCC
Q 040394 615 RFDLGEVMIKKMLEL----------HPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRG 664 (691)
Q Consensus 615 ~~~~A~~~~~~~~~~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 664 (691)
++++|+..++.+.+. +|+++.++..++.+....|+ +|.++++++.+..
T Consensus 226 ~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 226 NIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp CHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 999999999988775 48899999888888888897 8999999999864
No 94
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.91 E-value=4e-08 Score=94.76 Aligned_cols=175 Identities=8% Similarity=-0.056 Sum_probs=135.9
Q ss_pred HHHHHHHHhcccCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHchhh
Q 040394 483 QSARMVFDAMREKNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQP-NEVIFTTILSACSHTGMVGEGWKCFYSMCRD 561 (691)
Q Consensus 483 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 561 (691)
+.....+......+...+..+...+...|++++|...|++..+. .| +...+..+...+...|++++|...+++...
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~- 179 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL- 179 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG-
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch-
Confidence 34444444444445556677778888889999999999988875 44 456777778888999999999999987743
Q ss_pred cCCCCChhHHHH-HHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--chh
Q 040394 562 FKFVPSMKHYVC-MVDLLARAGRLEEALEFMENM-PI-EPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDK--ACY 636 (691)
Q Consensus 562 ~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~ 636 (691)
..|+...... ....+.+.++.++|++.+++. .. +.+...+..+...+...|++++|...++++++.+|++ ...
T Consensus 180 --~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 180 --QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp --GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred --hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 3566433322 233466778888888888887 33 4466789999999999999999999999999999998 789
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHh
Q 040394 637 YVLVSNLYASDGRWIRVNQVRELMKQ 662 (691)
Q Consensus 637 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 662 (691)
+..++.++...|+.++|...+++.+.
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999999999887654
No 95
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.90 E-value=1.4e-09 Score=93.43 Aligned_cols=139 Identities=12% Similarity=0.017 Sum_probs=90.7
Q ss_pred HHhcCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCC
Q 040394 506 GYGMQGDGGGSLALFSDMLNEEVQPNE-VIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGR 583 (691)
Q Consensus 506 ~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~ 583 (691)
.+...|++++|++.+++.... .|+. ..+..+...|.+.|++++|++.|++.++ +.|+ ...|..+..+|.+.|+
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCc
Confidence 344456666666666665442 3332 2344455566677777777777776543 3454 5667777777777777
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhcCCCCchhHHHHHHHHHhCCC
Q 040394 584 LEEALEFMENM-PIEP-DVSLFGAFLHGCGLYSRFDLGEV-MIKKMLELHPDKACYYVLVSNLYASDGR 649 (691)
Q Consensus 584 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 649 (691)
+++|+..|++. ...| +...|..+...+.+.|++++|.. +++++++++|+++.++...+.++...|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 77777777776 4444 45677777777777887765554 4578888888888888877777777775
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.88 E-value=5.6e-08 Score=81.30 Aligned_cols=131 Identities=15% Similarity=0.191 Sum_probs=97.7
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHH
Q 040394 499 TWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLL 578 (691)
Q Consensus 499 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~ 578 (691)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++++... .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 45666777777777888888887777653 335566667777777788888888888877443 122356677778888
Q ss_pred HhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 040394 579 ARAGRLEEALEFMENM-P-IEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPD 632 (691)
Q Consensus 579 ~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 632 (691)
...|++++|.+.++++ . .+.+...+..+...+...|++++|...++++.+..|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8888888888888877 2 2345677888888899999999999999999988886
No 97
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.86 E-value=1.5e-07 Score=86.05 Aligned_cols=172 Identities=6% Similarity=-0.056 Sum_probs=113.8
Q ss_pred HHHHHHhccc-CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC----CHHHHHHHHHHch
Q 040394 485 ARMVFDAMRE-KNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTG----MVGEGWKCFYSMC 559 (691)
Q Consensus 485 A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~A~~~~~~m~ 559 (691)
|.+.|++..+ .+...+..+...|...+++++|+..|++..+.| +...+..+-..|.. + ++++|.+.|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 3344443332 345556666666666666777777777666654 34445555555555 4 6777777777652
Q ss_pred hhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 040394 560 RDFKFVPSMKHYVCMVDLLAR----AGRLEEALEFMENM-PIEPD---VSLFGAFLHGCGL----YSRFDLGEVMIKKML 627 (691)
Q Consensus 560 ~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 627 (691)
+. -+...+..|...|.. .+++++|+++|++. ...|+ ...+..|...|.. .+++++|...++++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 21 235556666666665 67788888887776 33442 6677777777777 778888888888888
Q ss_pred hcCCCCchhHHHHHHHHHhC-C-----CcHHHHHHHHHHHhCCC
Q 040394 628 ELHPDKACYYVLVSNLYASD-G-----RWIRVNQVRELMKQRGL 665 (691)
Q Consensus 628 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~g~ 665 (691)
+. |+++..+..|+.+|... | ++++|.+.+++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 87 56677888888888754 3 88888888888887765
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.86 E-value=7.1e-09 Score=113.01 Aligned_cols=190 Identities=11% Similarity=0.002 Sum_probs=134.5
Q ss_pred hccCcHHHHHHHHHHHH--------HcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHhHHHHHHHHHhc
Q 040394 441 ASLGAVQVGSSLHAYST--------KQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE---KNTVTWSAMIGGYGM 509 (691)
Q Consensus 441 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 509 (691)
...|++++|...++... +.. +.+...+..+...|...|++++|...|++..+ .+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 67788888888888887 444 66777788888888888888888888887764 366788888888888
Q ss_pred CCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHH
Q 040394 510 QGDGGGSLALFSDMLNEEVQP-NEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEA 587 (691)
Q Consensus 510 ~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 587 (691)
.|++++|+..|++..+. .| +...+..+..++...|++++ .+.|++..+ +.|+ ...|..+..++.+.|++++|
T Consensus 480 ~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888874 34 44667777778888888888 888886643 3554 56777888888888888888
Q ss_pred HHHHHhC-CCCCCH-HHHHHHHHHHHhcCC-----HHHHHHHHHHHHhcCCCCchhHH
Q 040394 588 LEFMENM-PIEPDV-SLFGAFLHGCGLYSR-----FDLGEVMIKKMLELHPDKACYYV 638 (691)
Q Consensus 588 ~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~p~~~~~~~ 638 (691)
++.|++. ...|+. ..+..+..++...++ .+...+..+......++.+....
T Consensus 554 ~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~ 611 (681)
T 2pzi_A 554 VRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQ 611 (681)
T ss_dssp HHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHH
T ss_pred HHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHH
Confidence 8888887 566664 466666666655554 23344444444446666555443
No 99
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.86 E-value=1.9e-08 Score=85.78 Aligned_cols=102 Identities=13% Similarity=0.072 Sum_probs=91.1
Q ss_pred CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 040394 563 KFVPS-MKHYVCMVDLLARAGRLEEALEFMENM-PIEP-DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVL 639 (691)
Q Consensus 563 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 639 (691)
.+.|+ ...+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..|+++++++|+++..+..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 56676 567778888999999999999999998 4444 57789999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHhCC
Q 040394 640 VSNLYASDGRWIRVNQVRELMKQRG 664 (691)
Q Consensus 640 l~~~~~~~g~~~~A~~~~~~~~~~g 664 (691)
++.+|...|++++|.+.|++.++..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999998854
No 100
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.86 E-value=1.9e-08 Score=96.80 Aligned_cols=194 Identities=11% Similarity=0.024 Sum_probs=95.5
Q ss_pred chHHHHHHHHcccCChhHHHHHHHHHHHh------C-CC-ChhHHHHHHHHhHhcCChHHHHHHHhccCC----------
Q 040394 147 FVFSKVLKACCELRDIDEGMKVHCEIVKV------G-GP-DSFVLTGLVDMYAKCRDIGSSRQVFDETLD---------- 208 (691)
Q Consensus 147 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------- 208 (691)
.++..+...+...|++++|...+++..+. + .+ ...++..+...|...|++++|...|++..+
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34444445555555555555555554443 1 11 344555555555555555555555544311
Q ss_pred C-ChhhHHHHHHHHHhCCChhHHHHHHHHHHhC------CCCC-ChhhHHHHHHHHHccCChhhHHHHHHHHHHH-----
Q 040394 209 K-NVVSWTSMIAGYVQNDCAQEGLVLFNRMREG------FVEG-NQITLGSLVTACAKLRALHQGKWLHGYILKI----- 275 (691)
Q Consensus 209 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~----- 275 (691)
| ...+|..+...+...|++++|.+.+++..+. +-.| ...++..+...+...|++++|...++...+.
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 1 2334555555666666666666666655442 1111 2344555666666666666666666666543
Q ss_pred --CCCCc-hHHHHHHHHHHHhcC------CHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCCchhHHHHHHHhhH
Q 040394 276 --GIEIN-SHLVTALLDMYVKCG------NIRDARSVFDELCSI---DLVSWTAMIVGYTQSGYPDKALKLFTDKKW 340 (691)
Q Consensus 276 --g~~~~-~~~~~~li~~~~~~g------~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 340 (691)
...+. ...+..+...+...+ .+..+...++..... ...++..+...|...|++++|.+++++..+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11111 222222222222222 234444444444322 234677788888888888888888887654
No 101
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.84 E-value=1.7e-06 Score=89.83 Aligned_cols=124 Identities=14% Similarity=0.142 Sum_probs=62.4
Q ss_pred hHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHh-ccCcHHHHHHHHHHHHHcC
Q 040394 382 TVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACA-SLGAVQVGSSLHAYSTKQG 460 (691)
Q Consensus 382 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~ 460 (691)
.+|...+..+.+.+..+.|..+|++.... ..+...|......-. ..++.+.|..+|+...+..
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A~~~----------------~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~ 350 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIELGNE----------------GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH 350 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHTTS----------------CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhCC----------------CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 34455555555556666666666665211 112223322111111 1224666666666666543
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHhHHHHHHHHHhcCCChHHHHHHHHHHH
Q 040394 461 LLSSNVYVGTALLNFYAKCGDAQSARMVFDAMREKNTVTWSAMIGGYGMQGDGGGSLALFSDML 524 (691)
Q Consensus 461 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 524 (691)
+.++..+...++...+.|+.+.|..+|+.+. .....|...+.--...|+.+.+.++++++.
T Consensus 351 --~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 351 --PDSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp --TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344444555555566666666666666653 234455555554445555555555555544
No 102
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.83 E-value=1.3e-08 Score=87.20 Aligned_cols=121 Identities=11% Similarity=-0.012 Sum_probs=102.7
Q ss_pred HHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 040394 540 SACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEFMENM-PIEP-DVSLFGAFLHGCGLYSRF 616 (691)
Q Consensus 540 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 616 (691)
..+...|++++|++.++... ...|+ ...+-.+...|.+.|++++|++.|++. ...| +..+|..+..++...|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 35567789999999998653 45565 556677899999999999999999998 4445 567999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHH-HHHHHhC
Q 040394 617 DLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQV-RELMKQR 663 (691)
Q Consensus 617 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~ 663 (691)
++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++.++.
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999887765 5887764
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.81 E-value=5.1e-08 Score=104.40 Aligned_cols=159 Identities=11% Similarity=0.059 Sum_probs=120.9
Q ss_pred cCCHHHHHHHHHhccc---CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHH
Q 040394 479 CGDAQSARMVFDAMRE---KNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCF 555 (691)
Q Consensus 479 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 555 (691)
.|++++|...+++..+ .+...|..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999988774 357789999999999999999999999998853 334677888888999999999999999
Q ss_pred HHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhc
Q 040394 556 YSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEFMENM-PIEP-DVSLFGAFLHGCGLY---SRFDLGEVMIKKMLEL 629 (691)
Q Consensus 556 ~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 629 (691)
++..+. .|+ ...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |++++|...++++++.
T Consensus 81 ~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 987543 455 678888999999999999999999987 3334 567888888999999 9999999999999999
Q ss_pred CCCCchhHHHHH
Q 040394 630 HPDKACYYVLVS 641 (691)
Q Consensus 630 ~p~~~~~~~~l~ 641 (691)
+|++...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999888887775
No 104
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.80 E-value=9.4e-08 Score=87.16 Aligned_cols=128 Identities=5% Similarity=0.030 Sum_probs=95.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHH
Q 040394 501 SAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLA 579 (691)
Q Consensus 501 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~ 579 (691)
+.+...|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...|++..+ +.|+ ...+..+..+|.
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHH
Confidence 347888889999999999999988852 33556777888888999999999999997754 4565 677888888876
Q ss_pred hcCC--hHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 040394 580 RAGR--LEEALEFMENMP-IEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPD 632 (691)
Q Consensus 580 ~~g~--~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 632 (691)
..|+ .+.+...+++.. ..|....+.....++...|++++|+..|++++++.|+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 6654 445566666662 2233334555666677889999999999999999998
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.79 E-value=6.5e-08 Score=85.58 Aligned_cols=77 Identities=9% Similarity=0.028 Sum_probs=63.1
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHhCCCcHHHHHHHHHHH
Q 040394 586 EALEFMENM-PIEP-DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDK--ACYYVLVSNLYASDGRWIRVNQVRELMK 661 (691)
Q Consensus 586 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 661 (691)
+|++.+++. ...| +...+..+...+...|++++|...++++++.+|+. +..+..++.++...|+.++|...+++.+
T Consensus 92 ~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 92 PELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 355556555 3344 56788889999999999999999999999999875 4588999999999999999999998876
Q ss_pred h
Q 040394 662 Q 662 (691)
Q Consensus 662 ~ 662 (691)
.
T Consensus 172 ~ 172 (176)
T 2r5s_A 172 Y 172 (176)
T ss_dssp H
T ss_pred H
Confidence 4
No 106
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.79 E-value=3.9e-08 Score=81.24 Aligned_cols=100 Identities=11% Similarity=0.080 Sum_probs=66.6
Q ss_pred CCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 040394 564 FVPS-MKHYVCMVDLLARAGRLEEALEFMENM-PIEP-DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLV 640 (691)
Q Consensus 564 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 640 (691)
+.|+ ...+......|.+.|++++|++.|++. ...| +...|..+..++.+.|++++|+..++++++++|+++..|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4454 345556666677777777777777665 3233 455666666677777777777777777777777777777777
Q ss_pred HHHHHhCCCcHHHHHHHHHHHhC
Q 040394 641 SNLYASDGRWIRVNQVRELMKQR 663 (691)
Q Consensus 641 ~~~~~~~g~~~~A~~~~~~~~~~ 663 (691)
+.+|...|++++|++.+++.++.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 77777777777777777766653
No 107
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.75 E-value=8.8e-08 Score=84.71 Aligned_cols=156 Identities=10% Similarity=-0.055 Sum_probs=120.9
Q ss_pred hhhHHHHHHhcCCChHHHHHHhccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHH-Hc
Q 040394 82 CNTKLVSMYGSFGHVKYARSVFDSMPN---PDFYSFQVMIRWYFLNDLYKDIVEFYKCMRKRLKEHDNFVFSKVLKA-CC 157 (691)
Q Consensus 82 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~ 157 (691)
....+...+.+.|++++|...|++..+ .+...+..+..++...|++++|+..|++..+.. |+...+...... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 556678889999999999999999874 456789999999999999999999999987653 344332222111 22
Q ss_pred ccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhccCC--CC---hhhHHHHHHHHHhCCChhHHHH
Q 040394 158 ELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDETLD--KN---VVSWTSMIAGYVQNDCAQEGLV 232 (691)
Q Consensus 158 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~---~~~~~~li~~~~~~g~~~~A~~ 232 (691)
..+....|...++...+..|.+...+..+...+...|++++|...|++..+ |+ ...+..+...+...|+.++|..
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 223444578899999998888899999999999999999999999988744 32 4478888888888999999988
Q ss_pred HHHHHHh
Q 040394 233 LFNRMRE 239 (691)
Q Consensus 233 ~~~~m~~ 239 (691)
.|++...
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887653
No 108
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.75 E-value=2e-07 Score=85.36 Aligned_cols=129 Identities=12% Similarity=0.018 Sum_probs=94.5
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHH
Q 040394 498 VTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVD 576 (691)
Q Consensus 498 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~ 576 (691)
..+..+...+...|++++|+..+++. +.|+...+..+..++...|++++|.+.+++.... .|+ ...+..+..
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~lg~ 79 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQRGM 79 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHH
Confidence 34556677777888888888888766 3567777777777888888888888888876443 343 667777888
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 040394 577 LLARAGRLEEALEFMENM-PIEP-D----------------VSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDK 633 (691)
Q Consensus 577 ~~~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 633 (691)
+|...|++++|++.+++. ...| + ...+..+..++...|++++|...++++++..|++
T Consensus 80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 888888888888887776 2122 1 2567777777888888888888888888888875
No 109
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.72 E-value=3.1e-07 Score=100.07 Aligned_cols=168 Identities=10% Similarity=-0.045 Sum_probs=134.8
Q ss_pred HhcCCHHHHHHHHHhcc--------c---CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccc
Q 040394 477 AKCGDAQSARMVFDAMR--------E---KNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHT 545 (691)
Q Consensus 477 ~~~g~~~~A~~~~~~~~--------~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 545 (691)
...|++++|++.+++.. + .+...|..+...+...|++++|+..+++..+.. +-+...+..+-.++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 67889999999998876 2 356788888889999999999999999988852 33556777777788899
Q ss_pred CCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 040394 546 GMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEFMENM-PIEP-DVSLFGAFLHGCGLYSRFDLGEVM 622 (691)
Q Consensus 546 g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 622 (691)
|++++|.+.|++..+ +.|+ ...+..+..+|.+.|++++ ++.|++. ...| +...|..+..++.+.|++++|...
T Consensus 481 g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999987753 4565 6778888889999999999 8888887 4344 556888888899999999999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhCCC
Q 040394 623 IKKMLELHPDKACYYVLVSNLYASDGR 649 (691)
Q Consensus 623 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 649 (691)
++++++++|++...+..++.++...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999988899888888876555
No 110
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.72 E-value=3.1e-07 Score=89.50 Aligned_cols=212 Identities=8% Similarity=-0.033 Sum_probs=150.4
Q ss_pred ccCcHHHHHHHHHHHHHcC---CC--CCc----hhHHHHHHHHHHhcCCHHHHHHHHHhccc-----CC----HhHHHHH
Q 040394 442 SLGAVQVGSSLHAYSTKQG---LL--SSN----VYVGTALLNFYAKCGDAQSARMVFDAMRE-----KN----TVTWSAM 503 (691)
Q Consensus 442 ~~~~~~~a~~~~~~~~~~~---~~--~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l 503 (691)
..|++++|..++++..+.. +. .++ ...|......|...|++++|...|.+..+ .+ ..+|+.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3567778888887666531 10 122 23566677788899999999999987663 12 3478888
Q ss_pred HHHHhcCCChHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC----hhHHHHH
Q 040394 504 IGGYGMQGDGGGSLALFSDMLNEEV---QPN--EVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS----MKHYVCM 574 (691)
Q Consensus 504 i~~~~~~~~~~~A~~~~~~m~~~g~---~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~l 574 (691)
...|...|++++|+..+++..+.-. .|. ..++..+...|.. |++++|++.|++...-..-..+ ..++..+
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l 161 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA 161 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 9999999999999999998765311 122 3567777778888 9999999999877543211111 4578889
Q ss_pred HHHHHhcCChHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh-----HHHHH
Q 040394 575 VDLLARAGRLEEALEFMENM-PI---EPD----VSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACY-----YVLVS 641 (691)
Q Consensus 575 i~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~l~ 641 (691)
...|.+.|++++|++.+++. .. .++ ...+..++..+...|++++|...+++++ ..|+.... ...++
T Consensus 162 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~ 240 (307)
T 2ifu_A 162 SRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLL 240 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHH
Confidence 99999999999999999987 11 112 2256666777778899999999999999 99976543 33444
Q ss_pred HHHHhCCCcHHHHHH
Q 040394 642 NLYASDGRWIRVNQV 656 (691)
Q Consensus 642 ~~~~~~g~~~~A~~~ 656 (691)
..+ ..|+.+.+.++
T Consensus 241 ~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 241 QAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHH-HTTCHHHHHHH
T ss_pred HHH-HhcCHHHHHHH
Confidence 544 56777666553
No 111
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.72 E-value=2.5e-06 Score=81.65 Aligned_cols=216 Identities=10% Similarity=0.084 Sum_probs=167.8
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcC--CHHHHHHHHHhccc---CCHhHHHHHHHHH----hcC--
Q 040394 442 SLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCG--DAQSARMVFDAMRE---KNTVTWSAMIGGY----GMQ-- 510 (691)
Q Consensus 442 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~-- 510 (691)
+....++|....+.+...+ |....+++.--..+...| ++++++..++.+.. .+...|+.-...+ ...
T Consensus 45 ~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 45 AEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred cCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccc
Confidence 3445578999999999998 788888888888888888 99999999998875 2455666544444 444
Q ss_pred -CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHH--HHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCC----
Q 040394 511 -GDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVG--EGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGR---- 583 (691)
Q Consensus 511 -~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~--~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~---- 583 (691)
+++++++.+++++.+.. +-|...|+.--.++.+.|.++ ++++.++++.+. -.-|...|+.-..++.+.|+
T Consensus 123 ~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp CCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCH
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchh
Confidence 78999999999999863 446677777666667777777 999999988654 22346677766666666666
Q ss_pred --hHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcC---CCCchhHHHHHHHHHhCCCcHHHHH
Q 040394 584 --LEEALEFMENM-P-IEPDVSLFGAFLHGCGLYSR-FDLGEVMIKKMLELH---PDKACYYVLVSNLYASDGRWIRVNQ 655 (691)
Q Consensus 584 --~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~ 655 (691)
++++++.++++ . .+-|...|+.+...+.+.|+ .+.+..+.+++.++. |.++..+..++.+|.+.|+.++|.+
T Consensus 200 ~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 88899998887 3 34577899888888888777 444666777777765 8888999999999999999999999
Q ss_pred HHHHHHh
Q 040394 656 VRELMKQ 662 (691)
Q Consensus 656 ~~~~~~~ 662 (691)
.++.+.+
T Consensus 280 ~~~~l~~ 286 (306)
T 3dra_A 280 VYDLLKS 286 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999876
No 112
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.71 E-value=5.1e-08 Score=83.19 Aligned_cols=101 Identities=9% Similarity=0.070 Sum_probs=74.2
Q ss_pred CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 040394 563 KFVPS-MKHYVCMVDLLARAGRLEEALEFMENM-PI-EPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVL 639 (691)
Q Consensus 563 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 639 (691)
.+.|+ ...+..+...+.+.|++++|++.|++. .. +.+...|..+..++...|++++|+..++++++++|+++..+..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 34454 455666677777778888887777776 33 3356677777777778888888888888888888888888888
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHhC
Q 040394 640 VSNLYASDGRWIRVNQVRELMKQR 663 (691)
Q Consensus 640 l~~~~~~~g~~~~A~~~~~~~~~~ 663 (691)
++.+|...|++++|.+.+++.++.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888888777664
No 113
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.70 E-value=1.4e-06 Score=84.31 Aligned_cols=160 Identities=9% Similarity=-0.020 Sum_probs=116.9
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC----hhHHHH
Q 040394 503 MIGGYGMQGDGGGSLALFSDMLNEE-VQPNEV----IFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS----MKHYVC 573 (691)
Q Consensus 503 li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~----~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~ 573 (691)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...+++......-.++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3667778888888888888887632 122221 2333555667778899999988887543222223 236888
Q ss_pred HHHHHHhcCChHHHHHHHHhC-----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------chhHH
Q 040394 574 MVDLLARAGRLEEALEFMENM-----PIEPD----VSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDK------ACYYV 638 (691)
Q Consensus 574 li~~~~~~g~~~~A~~~~~~~-----~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ 638 (691)
+..+|...|++++|++.++++ ..+.+ ..++..+...|.+.|++++|...+++++++.+.. ..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888999999999998888876 12112 2377888999999999999999999999854332 56889
Q ss_pred HHHHHHHhCCC-cHHHHHHHHHHHh
Q 040394 639 LVSNLYASDGR-WIRVNQVRELMKQ 662 (691)
Q Consensus 639 ~l~~~~~~~g~-~~~A~~~~~~~~~ 662 (691)
.++.+|.+.|+ +++|.+.+++..+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999988765
No 114
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.69 E-value=5.7e-07 Score=87.01 Aligned_cols=164 Identities=10% Similarity=-0.054 Sum_probs=117.6
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC----hh
Q 040394 499 TWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNE-----VIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS----MK 569 (691)
Q Consensus 499 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~ 569 (691)
.+...+..+...|++++|.+.+++..+.....+. ..+..+...+...|++++|...+++......-..+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4445667778888888888888887764322111 12333444667788999999988876433211112 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------Cc
Q 040394 570 HYVCMVDLLARAGRLEEALEFMENM----PIEPD-----VSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPD------KA 634 (691)
Q Consensus 570 ~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~ 634 (691)
+++.+...|...|++++|++.+++. ...|+ ..++..+...|...|++++|...++++++..++ ..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888889999999999999888876 11222 257888889999999999999999999875432 15
Q ss_pred hhHHHHHHHHHhCCCcHHH-HHHHHHHHh
Q 040394 635 CYYVLVSNLYASDGRWIRV-NQVRELMKQ 662 (691)
Q Consensus 635 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 662 (691)
.++..++.+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788899999999999999 777777653
No 115
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.69 E-value=7.2e-07 Score=85.86 Aligned_cols=163 Identities=4% Similarity=-0.028 Sum_probs=113.2
Q ss_pred CCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhccCC--CChhhHHH-HHH
Q 040394 143 EHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDETLD--KNVVSWTS-MIA 219 (691)
Q Consensus 143 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~ 219 (691)
+.+...+..+...+...|++++|...+++..+..|.+...+..+...+.+.|++++|...+++... |+...... ...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 344556777777888899999999999999998888888999999999999999999999998865 44332222 223
Q ss_pred HHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCCC-chHHHHHHHHHHHhcCCHH
Q 040394 220 GYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIGIEI-NSHLVTALLDMYVKCGNIR 298 (691)
Q Consensus 220 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~ 298 (691)
.+.+.++.++|.+.|++...... .+...+..+...+...|+.++|...+..+.+..... +...+..++..+...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 35667778888888888776432 245566666666677777777777777776654321 2445666666666666666
Q ss_pred HHHHHHHh
Q 040394 299 DARSVFDE 306 (691)
Q Consensus 299 ~A~~~~~~ 306 (691)
+|...+++
T Consensus 273 ~a~~~~r~ 280 (287)
T 3qou_A 273 ALASXYRR 280 (287)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 66555543
No 116
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.68 E-value=7.5e-07 Score=81.08 Aligned_cols=170 Identities=11% Similarity=-0.022 Sum_probs=128.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHH----------------HHHHHHhcCCHHHHHHHHHhccc-
Q 040394 432 TLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTA----------------LLNFYAKCGDAQSARMVFDAMRE- 494 (691)
Q Consensus 432 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~~~- 494 (691)
.+......+...|+++.|...|+...+.. |.+...+.. +...|.+.|++++|...|++..+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34445556778999999999999999987 667777777 89999999999999999998874
Q ss_pred -C-CHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCC--HHHHHHHHHHchhhcCCCCChh
Q 040394 495 -K-NTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQP-NEVIFTTILSACSHTGM--VGEGWKCFYSMCRDFKFVPSMK 569 (691)
Q Consensus 495 -~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~--~~~A~~~~~~m~~~~~~~p~~~ 569 (691)
| +...|..+...+...|++++|+..|++..+. .| +...+..+..++...|. .+.+...++... ...|...
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 158 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS---SPTKMQY 158 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh---CCCchhH
Confidence 3 6789999999999999999999999999985 45 45667777666655543 344555555441 2223333
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHH
Q 040394 570 HYVCMVDLLARAGRLEEALEFMENM-PIEPDVSLFGAFLH 608 (691)
Q Consensus 570 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~ 608 (691)
.+..+..++...|++++|++.|++. ...|+......+..
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4445566777889999999999997 78888765555443
No 117
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.67 E-value=1.1e-05 Score=83.65 Aligned_cols=369 Identities=9% Similarity=-0.010 Sum_probs=208.8
Q ss_pred hHHHHHHHhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC-hhhHHHHHHHHHH
Q 040394 196 IGSSRQVFDETLDKNVVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRA-LHQGKWLHGYILK 274 (691)
Q Consensus 196 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~-~~~a~~~~~~~~~ 274 (691)
++.|..+|+... ..+-. |+++.+..+|++.... .|+...|..-+....+.++ .+....+|+..+.
T Consensus 11 i~~aR~vyer~l-----------~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~ 76 (493)
T 2uy1_A 11 LSSPSAIMEHAR-----------RLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLG 76 (493)
T ss_dssp -CCHHHHHHHHH-----------HHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHH
T ss_pred hHHHHHHHHHHH-----------HHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 666666666542 22221 8899999999998773 4788888887777766663 4567778887776
Q ss_pred H-CCCC-chHHHHHHHHHHH----hcCCHHHHHHHHHhcCC-CC--hh-HHHHHHHHHHhcCCchhHHHHHHHhhHCCCC
Q 040394 275 I-GIEI-NSHLVTALLDMYV----KCGNIRDARSVFDELCS-ID--LV-SWTAMIVGYTQSGYPDKALKLFTDKKWADFF 344 (691)
Q Consensus 275 ~-g~~~-~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~-~~--~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 344 (691)
. |..| +..+|...+..+. ..|+++.+.++|++... |. .. .|...... ........+.+++.+..
T Consensus 77 ~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~~----- 150 (493)
T 2uy1_A 77 QFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDTL----- 150 (493)
T ss_dssp HSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHHH-----
T ss_pred HcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHHh-----
Confidence 4 5433 5677777776654 34567888888888733 21 11 12222111 11111222222222211
Q ss_pred CcHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCC-chhHHHHHHHHhHhc--CC-----hHHHHHHHHhCCCCCchhHH
Q 040394 345 PNHVTIASVLSASAQLGNLNMGRMVHSLGIRLGLE-DYTVINALVDMYAKC--HV-----IADARYIFETTSEKDVIAWN 416 (691)
Q Consensus 345 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~--g~-----~~~a~~~~~~~~~~~~~~~~ 416 (691)
+.+..|+.++..+...-.. +...+...++.-... |- .+.+..+|+++...
T Consensus 151 ----------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~------ 208 (493)
T 2uy1_A 151 ----------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS------ 208 (493)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH------
T ss_pred ----------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc------
Confidence 1122233333322221111 222333333332211 00 23345566665432
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHH-HHHHHhcc--
Q 040394 417 SIISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSA-RMVFDAMR-- 493 (691)
Q Consensus 417 ~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~-- 493 (691)
.+-+...|...+.-+.+.|+.+.|..+++..... . .+...+.. |+...+.++. ..+.+...
T Consensus 209 ---------~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P--~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~ 272 (493)
T 2uy1_A 209 ---------FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-S--DGMFLSLY----YGLVMDEEAVYGDLKRKYSMG 272 (493)
T ss_dssp ---------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--CSSHHHHH----HHHHTTCTHHHHHHHHHTC--
T ss_pred ---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C--CcHHHHHH----HHhhcchhHHHHHHHHHHHhh
Confidence 3445677777777788899999999999999988 3 33333322 2221111111 11221110
Q ss_pred ----------cCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc-ccCCHHHHHHHHHHchhhc
Q 040394 494 ----------EKNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACS-HTGMVGEGWKCFYSMCRDF 562 (691)
Q Consensus 494 ----------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~~~A~~~~~~m~~~~ 562 (691)
......|...+..+.+.++.+.|..+|++. .. ..++...|......-. ..++.+.|..+|+...+.+
T Consensus 273 ~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~ 350 (493)
T 2uy1_A 273 EAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH 350 (493)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC
T ss_pred ccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 011245666677777778899999999988 32 1234444433222111 2336899999999886664
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040394 563 KFVPSMKHYVCMVDLLARAGRLEEALEFMENMPIEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLE 628 (691)
Q Consensus 563 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (691)
+-. +..+...++...+.|+.+.|..+|+++. .....|...+.--...|+.+.+..+++++.+
T Consensus 351 ~~~--~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 351 PDS--TLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp TTC--HHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 322 3455667777788899999999999983 3567787777777778999999988888875
No 118
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.62 E-value=2.6e-07 Score=78.26 Aligned_cols=100 Identities=6% Similarity=-0.022 Sum_probs=72.5
Q ss_pred CCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 040394 564 FVPS-MKHYVCMVDLLARAGRLEEALEFMENM-PIE-PDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLV 640 (691)
Q Consensus 564 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 640 (691)
+.|+ ...+..+...+.+.|++++|++.|++. ... .+...|..+..++...|++++|+..++++++++|+++..+..+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 4444 445555666777777777777777776 323 3556777777777778888888888888888888888888888
Q ss_pred HHHHHhCCCcHHHHHHHHHHHhC
Q 040394 641 SNLYASDGRWIRVNQVRELMKQR 663 (691)
Q Consensus 641 ~~~~~~~g~~~~A~~~~~~~~~~ 663 (691)
+.+|...|++++|.+.+++.++.
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888887777654
No 119
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.62 E-value=1.8e-05 Score=75.68 Aligned_cols=229 Identities=9% Similarity=0.015 Sum_probs=176.0
Q ss_pred HhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCC-HHHHHHHHHHHhccC--cHHHHHHHHHHHHHcCCCCCchhH
Q 040394 392 AKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPD-AVTLVSVISACASLG--AVQVGSSLHAYSTKQGLLSSNVYV 468 (691)
Q Consensus 392 ~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~-~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~ 468 (691)
.+....++|+..++.+... .|+ ...|+.--..+...+ +++++..+++.+.... |.+..+
T Consensus 44 ~~~e~s~~aL~~t~~~L~~----------------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~a 105 (306)
T 3dra_A 44 KAEEYSERALHITELGINE----------------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQI 105 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHH
T ss_pred HcCCCCHHHHHHHHHHHHH----------------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHH
Confidence 3344456788888877643 354 445676667777777 9999999999999988 677777
Q ss_pred HHHHHHHH----Hhc---CCHHHHHHHHHhccc---CCHhHHHHHHHHHhcCCChH--HHHHHHHHHHHCCCCCCHHHHH
Q 040394 469 GTALLNFY----AKC---GDAQSARMVFDAMRE---KNTVTWSAMIGGYGMQGDGG--GSLALFSDMLNEEVQPNEVIFT 536 (691)
Q Consensus 469 ~~~l~~~~----~~~---g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~--~A~~~~~~m~~~g~~p~~~~~~ 536 (691)
++.-...+ ... +++++++.+++.+.+ +|..+|+.-...+.+.|.++ ++++.++++++.. +-|...|+
T Consensus 106 W~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~ 184 (306)
T 3dra_A 106 WNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWS 184 (306)
T ss_dssp HHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHH
Confidence 76665555 555 789999999999885 47778888777778888888 9999999999875 34556666
Q ss_pred HHHHHhcccCC------HHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHH-HHHHHHhC-CC----CCCHHHH
Q 040394 537 TILSACSHTGM------VGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEE-ALEFMENM-PI----EPDVSLF 603 (691)
Q Consensus 537 ~ll~~~~~~g~------~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~ 603 (691)
.-...+...+. ++++++.++.++.. .|+ ...|+.+...+.+.|+..+ +.++..+. .. ..+...+
T Consensus 185 ~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 261 (306)
T 3dra_A 185 HRFFLLFSKKHLATDNTIDEELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFAL 261 (306)
T ss_dssp HHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHH
T ss_pred HHHHHHHhccccchhhhHHHHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHH
Confidence 65555555565 88999999877543 555 7788888888888888544 56677776 22 3477889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCchhHHHHHH
Q 040394 604 GAFLHGCGLYSRFDLGEVMIKKMLE-LHPDKACYYVLVSN 642 (691)
Q Consensus 604 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~l~~ 642 (691)
..+...+.+.|+.++|.++++.+.+ .+|-...+|...+.
T Consensus 262 ~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 262 ETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 9999999999999999999999997 79998888876654
No 120
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.62 E-value=5e-07 Score=96.69 Aligned_cols=146 Identities=8% Similarity=-0.042 Sum_probs=102.4
Q ss_pred cCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHhHHHHHHHHHhcCCChHHHHHH
Q 040394 443 LGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE---KNTVTWSAMIGGYGMQGDGGGSLAL 519 (691)
Q Consensus 443 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~ 519 (691)
.|+.++|...+++..+.. +.+...+..+...|...|++++|...+++..+ .+...|..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 467888888888888776 67788888888888889999999999888764 2567888888888899999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhc---CChHHHHHHHHhC
Q 040394 520 FSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARA---GRLEEALEFMENM 594 (691)
Q Consensus 520 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~---g~~~~A~~~~~~~ 594 (691)
+++..+.. +.+...+..+..++...|++++|.+.+++..+. .|+ ...+..+...+... |+.++|.+.+++.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 98888753 334567777888888889999999988877543 454 66777888888888 8889998888887
No 121
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.59 E-value=6.5e-07 Score=73.78 Aligned_cols=112 Identities=10% Similarity=0.023 Sum_probs=88.6
Q ss_pred CCCH-HHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHH
Q 040394 529 QPNE-VIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEFMENM-PIEP-DVSLFG 604 (691)
Q Consensus 529 ~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 604 (691)
.|+. ..+...-..+.+.|++++|++.|++.++ +.|+ ...|..+..+|.+.|++++|++.+++. ...| +...|.
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK---RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 3443 3455556677788888888888887643 3454 677888888888888998888888887 4334 567899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 040394 605 AFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNL 643 (691)
Q Consensus 605 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 643 (691)
.+..++...|++++|...|+++++++|+++..+..++.+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999999999999999999999999988888765
No 122
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.59 E-value=4.7e-06 Score=75.97 Aligned_cols=174 Identities=9% Similarity=-0.104 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC-CHhHHHHHHHHHhcCC----ChHHHHHHHHH
Q 040394 448 VGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMREK-NTVTWSAMIGGYGMQG----DGGGSLALFSD 522 (691)
Q Consensus 448 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~----~~~~A~~~~~~ 522 (691)
+|...|++..+.| ++..+..+...|...+++++|...|++..+. +...+..|...|.. + ++++|+..|++
T Consensus 4 eA~~~~~~aa~~g----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 4 EPGSQYQQQAEAG----DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp CTTHHHHHHHHTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 4566777777654 4677778888898999999999999988764 67788888888887 6 89999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHhcc----cCCHHHHHHHHHHchhhcCCCCC---hhHHHHHHHHHHh----cCChHHHHHHH
Q 040394 523 MLNEEVQPNEVIFTTILSACSH----TGMVGEGWKCFYSMCRDFKFVPS---MKHYVCMVDLLAR----AGRLEEALEFM 591 (691)
Q Consensus 523 m~~~g~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~p~---~~~~~~li~~~~~----~g~~~~A~~~~ 591 (691)
..+.| +...+..+-..|.. .+++++|.+.|++.. ...|. ...+..|...|.. .+++++|+++|
T Consensus 79 A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~---~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 79 AVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAA---RDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHT---SSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH---HcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 98865 55666667677766 889999999999763 34443 6788888899988 78999999999
Q ss_pred HhC-CCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhcCCC
Q 040394 592 ENM-PIEPDVSLFGAFLHGCGLY-S-----RFDLGEVMIKKMLELHPD 632 (691)
Q Consensus 592 ~~~-~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~p~ 632 (691)
++. ...++...+..|...|... | +.++|...++++.+..+.
T Consensus 153 ~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 153 KGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 998 3345666777888887653 3 899999999998887544
No 123
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.58 E-value=4e-07 Score=73.06 Aligned_cols=99 Identities=10% Similarity=0.042 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CchhHHHHHHH
Q 040394 568 MKHYVCMVDLLARAGRLEEALEFMENM-P-IEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPD--KACYYVLVSNL 643 (691)
Q Consensus 568 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~ 643 (691)
...+..+...+.+.|++++|...+++. . .+.+...+..+...+...|++++|...++++++..|+ +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 556777888888999999999998887 3 3345678888999999999999999999999999999 99999999999
Q ss_pred HHhC-CCcHHHHHHHHHHHhCCCc
Q 040394 644 YASD-GRWIRVNQVRELMKQRGLS 666 (691)
Q Consensus 644 ~~~~-g~~~~A~~~~~~~~~~g~~ 666 (691)
+... |++++|.+.+++..+....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccC
Confidence 9999 9999999999999886553
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.57 E-value=8.6e-07 Score=77.19 Aligned_cols=125 Identities=9% Similarity=-0.041 Sum_probs=92.7
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHH
Q 040394 535 FTTILSACSHTGMVGEGWKCFYSMCRDFKFVP-SMKHYVCMVDLLARAGRLEEALEFMENM-PI-EPDVSLFGAFLHGCG 611 (691)
Q Consensus 535 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~ 611 (691)
+..+...+...|++++|...+++.... .| +...+..+...+...|++++|++.+++. .. +.+...|..+...+.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 444455566667777777777665432 33 3566667777777788888888777776 22 335678888888999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhHHHHHH--HHHhCCCcHHHHHHHHHHHh
Q 040394 612 LYSRFDLGEVMIKKMLELHPDKACYYVLVSN--LYASDGRWIRVNQVRELMKQ 662 (691)
Q Consensus 612 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~ 662 (691)
..|++++|...++++++..|++...+..+.. .+...|++++|.+.++...+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999998887754444 48888999999999887654
No 125
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.56 E-value=1.2e-06 Score=80.79 Aligned_cols=55 Identities=9% Similarity=-0.084 Sum_probs=30.4
Q ss_pred HHHHHccCChhhHHHHHHHHHHHCCCC--chHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 040394 253 VTACAKLRALHQGKWLHGYILKIGIEI--NSHLVTALLDMYVKCGNIRDARSVFDEL 307 (691)
Q Consensus 253 i~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~ 307 (691)
...+.+.|++++|...|+.+++..... ....+..+..++.+.|+.++|.+.++.+
T Consensus 154 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 154 AEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 344555566666666666655543211 1234555666666666666666666655
No 126
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.56 E-value=1.3e-07 Score=90.80 Aligned_cols=189 Identities=8% Similarity=-0.055 Sum_probs=95.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccc--C-CHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc
Q 040394 468 VGTALLNFYAKCGDAQSARMVFDAMRE--K-NTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSH 544 (691)
Q Consensus 468 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 544 (691)
.+..+...+.+.|++++|...|++..+ | +...|..+...|.+.|++++|+..+++..+.. +-+...+..+..++..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 333444444444444444444444332 2 34444444445555555555555555544421 1223344444445555
Q ss_pred cCCHHHHHHHHHHchhhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040394 545 TGMVGEGWKCFYSMCRDFKFVPSM-KHYVCMVDLLARAGRLEEALEFMENMPIEPDVSLFGAFLHGCGLYSRFDLGEVMI 623 (691)
Q Consensus 545 ~g~~~~A~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 623 (691)
.|++++|...|++..+. .|+. ..+...+....+..+... ..........++......+.. + ..|++++|.+.+
T Consensus 85 ~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~~A~~~~ 158 (281)
T 2c2l_A 85 MESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKR-WNSIEERRIHQESELHSYLTR-L-IAAERERELEEC 158 (281)
T ss_dssp TTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHH-HHHHHHTCCCCCCHHHHHHHH-H-HHHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHH-H-HHHHHHHHHHHH
Confidence 55555555555544221 2210 011111111111111111 111222233344444443422 2 368899999999
Q ss_pred HHHHhcCCCCchhHHHHHHHHHhC-CCcHHHHHHHHHHHhC
Q 040394 624 KKMLELHPDKACYYVLVSNLYASD-GRWIRVNQVRELMKQR 663 (691)
Q Consensus 624 ~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 663 (691)
+++++.+|++......+...+.+. +.+++|.++|+++.+.
T Consensus 159 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 159 QRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp SGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999998877777777777766 7788999999888763
No 127
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.55 E-value=1e-06 Score=72.18 Aligned_cols=114 Identities=14% Similarity=0.123 Sum_probs=79.8
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHH
Q 040394 533 VIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENM-P-IEPDVSLFGAFLHGC 610 (691)
Q Consensus 533 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~ 610 (691)
..+..+...+...|++++|.+.++++.... +.+...+..+...+.+.|++++|...++++ . .+.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 445555556666667777776666664331 123556666777777777777777777766 2 234566777888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCC
Q 040394 611 GLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDG 648 (691)
Q Consensus 611 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 648 (691)
...|++++|...++++.+..|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88899999999999988888888888888877776543
No 128
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.55 E-value=3.3e-07 Score=81.06 Aligned_cols=124 Identities=6% Similarity=0.127 Sum_probs=63.2
Q ss_pred hcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCC-ChhHHHHHHHH-HHhcCCh-
Q 040394 508 GMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVP-SMKHYVCMVDL-LARAGRL- 584 (691)
Q Consensus 508 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~-~~~~g~~- 584 (691)
...|++++|+..+++..+.. +.+...+..+...+...|++++|...|++..+. .| +...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCcc
Confidence 34555666666666655532 234455555555666666666666666655322 23 24444455555 4455555
Q ss_pred -HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 040394 585 -EEALEFMENM-PIEP-DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKAC 635 (691)
Q Consensus 585 -~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 635 (691)
++|++.+++. ...| +...+..+...+...|++++|...++++++..|+++.
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 5665555554 2222 3445555555555566666666666666665555443
No 129
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.53 E-value=1.1e-06 Score=72.79 Aligned_cols=116 Identities=13% Similarity=0.018 Sum_probs=86.1
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 040394 533 VIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVP-SMKHYVCMVDLLARAGRLEEALEFMENM-PI-EPDVSLFGAFLHG 609 (691)
Q Consensus 533 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~ 609 (691)
..+..+...+...|++++|...+++.... .| +...+..+...+...|++++|++.+++. .. +.+...+..+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 44555555666667777777777665433 23 3556667777777777888887777776 22 3346678888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcH
Q 040394 610 CGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWI 651 (691)
Q Consensus 610 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 651 (691)
+...|++++|...++++.+..|+++..+..++.++...|+++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999998999999999988888763
No 130
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.53 E-value=1.1e-06 Score=80.22 Aligned_cols=123 Identities=13% Similarity=-0.001 Sum_probs=87.3
Q ss_pred hhHHHHHHhcCCChHHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHcccCCh
Q 040394 83 NTKLVSMYGSFGHVKYARSVFDSMPNPDFYSFQVMIRWYFLNDLYKDIVEFYKCMRKRLKEHDNFVFSKVLKACCELRDI 162 (691)
Q Consensus 83 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 162 (691)
+..+...+...|++++|...|++..+|+...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 34567777888888888888888877777788888888888888888888888887763 34556777777888888888
Q ss_pred hHHHHHHHHHHHhCCCCh----------------hHHHHHHHHhHhcCChHHHHHHHhcc
Q 040394 163 DEGMKVHCEIVKVGGPDS----------------FVLTGLVDMYAKCRDIGSSRQVFDET 206 (691)
Q Consensus 163 ~~a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~ 206 (691)
++|...++...+..+.+. .++..+..+|.+.|++++|...|++.
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 888888888887655433 44444444444444444444444443
No 131
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.52 E-value=8.3e-07 Score=73.25 Aligned_cols=95 Identities=8% Similarity=0.006 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 040394 569 KHYVCMVDLLARAGRLEEALEFMENM-PI-EPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYAS 646 (691)
Q Consensus 569 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 646 (691)
..+..+...+.+.|++++|++.|++. .. +.+...|..+..++...|++++|+..++++++.+|+++..+..++.++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34555666667777777777777766 22 23456677777777777777777777777777777777777777777777
Q ss_pred CCCcHHHHHHHHHHHhC
Q 040394 647 DGRWIRVNQVRELMKQR 663 (691)
Q Consensus 647 ~g~~~~A~~~~~~~~~~ 663 (691)
.|++++|.+.+++..+.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 77777777777777654
No 132
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.52 E-value=4e-07 Score=88.74 Aligned_cols=162 Identities=7% Similarity=-0.013 Sum_probs=125.0
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHCCC---CC-C-HHHHHHHHHHhcccCCHHHHHHHHHHchhhcCC--CCC--hh
Q 040394 499 TWSAMIGGYGMQGDGGGSLALFSDMLNEEV---QP-N-EVIFTTILSACSHTGMVGEGWKCFYSMCRDFKF--VPS--MK 569 (691)
Q Consensus 499 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~---~p-~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~--~p~--~~ 569 (691)
.|+.....|...|++++|...+.+..+... .+ . ..+|+.+...|...|++++|+..+++...-..- .|. ..
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 455567788899999999999998776311 11 1 346777888899999999999999876443211 111 45
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCC---CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc------h
Q 040394 570 HYVCMVDLLARAGRLEEALEFMENM-PIE---PD----VSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKA------C 635 (691)
Q Consensus 570 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~---p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~ 635 (691)
++..+..+|.. |++++|++.+++. ... .+ ..++..+...+...|++++|+..+++++++.|++. .
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 77888889988 9999999999887 111 11 35788889999999999999999999999766543 3
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHH
Q 040394 636 YYVLVSNLYASDGRWIRVNQVRELMK 661 (691)
Q Consensus 636 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 661 (691)
++..++.++...|++++|.+.+++.+
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 66778888899999999999999988
No 133
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.52 E-value=9.3e-07 Score=73.56 Aligned_cols=114 Identities=11% Similarity=0.037 Sum_probs=69.5
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 040394 533 VIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVP-SMKHYVCMVDLLARAGRLEEALEFMENM-PI-EPDVSLFGAFLHG 609 (691)
Q Consensus 533 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~ 609 (691)
..+..+...+...|++++|...+++.. ...| +...+..+...+...|++++|++.+++. .. +.+...+..+...
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAI---KRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHH---TTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 344444445555555555555555442 1233 2445555555566666666666665555 22 2345667777777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCC
Q 040394 610 CGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGR 649 (691)
Q Consensus 610 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 649 (691)
+...|++++|...++++++..|++...+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 7777888888888888887777777777777777766553
No 134
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.49 E-value=4.9e-07 Score=73.89 Aligned_cols=95 Identities=9% Similarity=-0.043 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhC
Q 040394 570 HYVCMVDLLARAGRLEEALEFMENM-PIEP-DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASD 647 (691)
Q Consensus 570 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 647 (691)
.+..+...+.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556777889999999999999998 4444 6778889999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHhCC
Q 040394 648 GRWIRVNQVRELMKQRG 664 (691)
Q Consensus 648 g~~~~A~~~~~~~~~~g 664 (691)
|++++|.+.+++.++..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999998754
No 135
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.48 E-value=1.1e-06 Score=86.65 Aligned_cols=95 Identities=11% Similarity=0.074 Sum_probs=81.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 040394 568 MKHYVCMVDLLARAGRLEEALEFMENM-PIEP-DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYA 645 (691)
Q Consensus 568 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 645 (691)
...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..|+++++++|++..++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 357778888889999999999988887 3334 66789999999999999999999999999999999999999999999
Q ss_pred hCCCcHHH-HHHHHHHHh
Q 040394 646 SDGRWIRV-NQVRELMKQ 662 (691)
Q Consensus 646 ~~g~~~~A-~~~~~~~~~ 662 (691)
..|++++| ...++.|.+
T Consensus 276 ~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 99999999 456666643
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.47 E-value=1.9e-06 Score=80.41 Aligned_cols=192 Identities=6% Similarity=-0.129 Sum_probs=134.2
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCCchhHHHHH-------HHHHHhcCCHHHHHHHHHhccc--C-------C---------
Q 040394 442 SLGAVQVGSSLHAYSTKQGLLSSNVYVGTAL-------LNFYAKCGDAQSARMVFDAMRE--K-------N--------- 496 (691)
Q Consensus 442 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~--~-------~--------- 496 (691)
..++.+.|.+.|.++.+.. |.....|..+ ...+.+.++..++...+..-.+ | +
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 5789999999999999998 7888888877 4666666666666655554443 1 1
Q ss_pred ------HhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC--h
Q 040394 497 ------TVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS--M 568 (691)
Q Consensus 497 ------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~ 568 (691)
...+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+... ... .|. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~-~~~-d~~~~~ 171 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAG-KWP-DKFLAG 171 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGG-GCS-CHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhh-ccC-CcccHH
Confidence 112344567778888888888888887764 3555444444557778888888888887552 111 111 2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC--C-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 040394 569 KHYVCMVDLLARAGRLEEALEFMENM--P-IEPD--VSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLV 640 (691)
Q Consensus 569 ~~~~~li~~~~~~g~~~~A~~~~~~~--~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 640 (691)
..+..+..++.+.|++++|++.|++. + ..|. ...+.....++.+.|+.++|...|+++...+|+ ......|
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 35667788888888888888888887 2 2143 235666777788888888888888888888888 6665555
No 137
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.45 E-value=1.7e-06 Score=72.44 Aligned_cols=96 Identities=6% Similarity=-0.129 Sum_probs=66.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 040394 568 MKHYVCMVDLLARAGRLEEALEFMENM-PI-EPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYA 645 (691)
Q Consensus 568 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 645 (691)
...+..+...+...|++++|++.|++. .. +.+...|..+..++...|++++|...++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 455666666667777777777766665 22 2345566677777777777777777777777777777777777777777
Q ss_pred hCCCcHHHHHHHHHHHhC
Q 040394 646 SDGRWIRVNQVRELMKQR 663 (691)
Q Consensus 646 ~~g~~~~A~~~~~~~~~~ 663 (691)
..|++++|.+.+++..+.
T Consensus 89 ~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 89 EMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 777777777777776653
No 138
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.45 E-value=3.9e-05 Score=73.99 Aligned_cols=193 Identities=12% Similarity=-0.067 Sum_probs=137.0
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHH---HHHHHHHHhcCCHHHHHHHHHhcccC-----C-
Q 040394 426 VSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVG---TALLNFYAKCGDAQSARMVFDAMREK-----N- 496 (691)
Q Consensus 426 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~-----~- 496 (691)
..|+..++..+...+.-.-+ .+..... ....... ...+..+...|++++|...+++..+. +
T Consensus 42 ~~~~~~~l~~i~~~l~~~~~---------~~~~~~~-~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~ 111 (293)
T 3u3w_A 42 VYPSMDILQGIAAKLQIPII---------HFYEVLI-YSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEF 111 (293)
T ss_dssp CCCCHHHHHHHHHHHTCCTH---------HHHHTTT-SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHH
T ss_pred CCCCHHHHHHHHHHhCcCHH---------HHhCCCC-CCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHH
Confidence 46777777777666543211 1111111 2222222 33467788999999999999987652 1
Q ss_pred ---HhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHhcccCCHHHHHHHHHHchhhc----CC
Q 040394 497 ---TVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQ-PN----EVIFTTILSACSHTGMVGEGWKCFYSMCRDF----KF 564 (691)
Q Consensus 497 ---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~----~~ 564 (691)
...+..+...+...+++++|+..+++..+.... ++ ..+++.+..+|...|++++|..++++..+.. +.
T Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 191 (293)
T 3u3w_A 112 QQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN 191 (293)
T ss_dssp HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc
Confidence 113445777778888999999999999984322 22 2368888889999999999999999886422 22
Q ss_pred CCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCC-HHHHHHHHHHHHh
Q 040394 565 VPS-MKHYVCMVDLLARAGRLEEALEFMENM-------PIEPD-VSLFGAFLHGCGLYSR-FDLGEVMIKKMLE 628 (691)
Q Consensus 565 ~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~ 628 (691)
.+. ..++..+...|.+.|++++|++.+++. +..+. ..+|..+..++.+.|+ +++|...+++++.
T Consensus 192 ~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 192 EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 222 347888999999999999999998877 22233 5688889999999994 6999999999886
No 139
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.44 E-value=1.2e-06 Score=76.33 Aligned_cols=109 Identities=9% Similarity=-0.040 Sum_probs=90.0
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 040394 531 NEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVP-SMKHYVCMVDLLARAGRLEEALEFMENM-PIEP-DVSLFGAFL 607 (691)
Q Consensus 531 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 607 (691)
+...+..+...+...|++++|++.|++..+. .| +...|..+..+|.+.|++++|++.+++. ...| +...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4456777778889999999999999987543 45 4778888999999999999999999988 4344 467888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 040394 608 HGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSN 642 (691)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 642 (691)
.++...|++++|...+++++++.|++...+...+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 99999999999999999999999998886655543
No 140
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.41 E-value=2.4e-06 Score=69.11 Aligned_cols=92 Identities=12% Similarity=0.026 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCC
Q 040394 571 YVCMVDLLARAGRLEEALEFMENM-P-IEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDG 648 (691)
Q Consensus 571 ~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 648 (691)
+..+...+...|++++|.+.+++. . .+.+...+..+...+...|++++|...++++.+..|+++..+..++.++...|
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 86 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 86 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence 333444444455555555554444 1 12234444445555555555555555555555555555555555555555555
Q ss_pred CcHHHHHHHHHHHh
Q 040394 649 RWIRVNQVRELMKQ 662 (691)
Q Consensus 649 ~~~~A~~~~~~~~~ 662 (691)
++++|.+.+++..+
T Consensus 87 ~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 87 RFEEAKRTYEEGLK 100 (118)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHH
Confidence 55555555555544
No 141
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.41 E-value=2.3e-06 Score=71.10 Aligned_cols=97 Identities=11% Similarity=0.062 Sum_probs=88.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 040394 568 MKHYVCMVDLLARAGRLEEALEFMENM-PIEP-DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYA 645 (691)
Q Consensus 568 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 645 (691)
...+..+...+.+.|++++|++.+++. ...| +...+..+...+...|++++|...++++.+..|+++..+..++.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 667888999999999999999999997 4444 67789999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHhCC
Q 040394 646 SDGRWIRVNQVRELMKQRG 664 (691)
Q Consensus 646 ~~g~~~~A~~~~~~~~~~g 664 (691)
..|++++|.+.+++..+..
T Consensus 96 ~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HHhhHHHHHHHHHHHHHhC
Confidence 9999999999999988753
No 142
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.40 E-value=8.4e-06 Score=78.70 Aligned_cols=163 Identities=12% Similarity=-0.057 Sum_probs=119.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-C------HhHHHHHHHHHhcCCChHHHHHHHHHHHHCCC---CCC--
Q 040394 466 VYVGTALLNFYAKCGDAQSARMVFDAMRE--K-N------TVTWSAMIGGYGMQGDGGGSLALFSDMLNEEV---QPN-- 531 (691)
Q Consensus 466 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~---~p~-- 531 (691)
...+...+..+...|++++|...+.+..+ + . ...+..+...+...|++++|+..+++..+... .+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 33445567778889999999888876553 1 1 12344466677888999999999999876321 222
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC
Q 040394 532 EVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-----MKHYVCMVDLLARAGRLEEALEFMENM-------PIEPD 599 (691)
Q Consensus 532 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~ 599 (691)
..+++.+...|...|++++|...+++........|+ ..++..+...|.+.|++++|++.+++. +....
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 347778888999999999999999987632222232 257888999999999999999998886 11111
Q ss_pred -HHHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 040394 600 -VSLFGAFLHGCGLYSRFDLG-EVMIKKMLE 628 (691)
Q Consensus 600 -~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 628 (691)
..+|..+...+...|++++| ...+++++.
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56788899999999999999 888998776
No 143
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.40 E-value=4.2e-06 Score=75.66 Aligned_cols=94 Identities=12% Similarity=0.043 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC----CCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCc---
Q 040394 569 KHYVCMVDLLARAGRLEEALEFMENM----PIEP-D----VSLFGAFLHGCGLYSRFDLGEVMIKKMLELHP--DKA--- 634 (691)
Q Consensus 569 ~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--~~~--- 634 (691)
..+..+...+...|++++|.+.+++. ...+ + ...+..+...+...|++++|...++++++..+ +++
T Consensus 67 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 146 (203)
T 3gw4_A 67 RALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAI 146 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHH
Confidence 34445555555666666665555554 0011 1 23455566666667777777777777665321 111
Q ss_pred -hhHHHHHHHHHhCCCcHHHHHHHHHHHh
Q 040394 635 -CYYVLVSNLYASDGRWIRVNQVRELMKQ 662 (691)
Q Consensus 635 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 662 (691)
..+..++.++...|++++|.+.+++..+
T Consensus 147 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 147 ACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2345666777777777777777666554
No 144
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.39 E-value=6.2e-06 Score=76.97 Aligned_cols=183 Identities=8% Similarity=-0.037 Sum_probs=138.2
Q ss_pred hcCCHHHHHHHHHhccc--C-CHhHHHHH-------HHHHhcCCChHHHHHHHHHHHHCCCCCCH---------------
Q 040394 478 KCGDAQSARMVFDAMRE--K-NTVTWSAM-------IGGYGMQGDGGGSLALFSDMLNEEVQPNE--------------- 532 (691)
Q Consensus 478 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l-------i~~~~~~~~~~~A~~~~~~m~~~g~~p~~--------------- 532 (691)
..++...|.+.|.+..+ | ....|..+ ...+...++..+++..+++-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 57999999999999885 3 45678777 4555555555555555555443 22221
Q ss_pred -------HHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCH----H
Q 040394 533 -------VIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENMPIEPDV----S 601 (691)
Q Consensus 533 -------~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~----~ 601 (691)
.....+...+...|++++|.++|+.+.. ..|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 2233455677889999999999997742 3565446666777899999999999999987544433 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC-CchhHHHHHHHHHhCCCcHHHHHHHHHHHhCCC
Q 040394 602 LFGAFLHGCGLYSRFDLGEVMIKKMLELH--PD-KACYYVLVSNLYASDGRWIRVNQVRELMKQRGL 665 (691)
Q Consensus 602 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 665 (691)
.+..+..++...|++++|+..|+++..-. |. .+......+.++.+.|+.++|...|+++.....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 67788889999999999999999998633 55 456788999999999999999999999988654
No 145
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.39 E-value=2.9e-06 Score=69.44 Aligned_cols=97 Identities=14% Similarity=0.182 Sum_probs=87.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 040394 568 MKHYVCMVDLLARAGRLEEALEFMENM-P-IEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYA 645 (691)
Q Consensus 568 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 645 (691)
...+..+...+...|++++|.+.++++ . .+.+..++..+...+...|++++|...++++.+..|+++..+..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 467788889999999999999999998 2 33467788999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHhCC
Q 040394 646 SDGRWIRVNQVRELMKQRG 664 (691)
Q Consensus 646 ~~g~~~~A~~~~~~~~~~g 664 (691)
..|++++|.+.++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999998754
No 146
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.37 E-value=1.4e-06 Score=71.87 Aligned_cols=95 Identities=8% Similarity=0.018 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch-------hHHH
Q 040394 569 KHYVCMVDLLARAGRLEEALEFMENM-PIEP-DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKAC-------YYVL 639 (691)
Q Consensus 569 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~ 639 (691)
..+..+...+.+.|++++|++.|++. ...| +...|..+..+|...|++++|+..+++++++.|++.. ++..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34556777777888888888887776 3334 4567777778888888888888888888887766542 5666
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHhC
Q 040394 640 VSNLYASDGRWIRVNQVRELMKQR 663 (691)
Q Consensus 640 l~~~~~~~g~~~~A~~~~~~~~~~ 663 (691)
++.++...|++++|++.+++.++.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 777788888888888888877663
No 147
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=4.3e-06 Score=70.97 Aligned_cols=109 Identities=9% Similarity=0.032 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHH
Q 040394 532 EVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS----MKHYVCMVDLLARAGRLEEALEFMENM-PIEP-DVSLFGA 605 (691)
Q Consensus 532 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 605 (691)
...+..+...+...|++++|.+.|++.. ...|+ ...+..+...|...|++++|++.+++. ...| +...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 3445555555555666666666665443 23444 344555555555555666655555554 2222 3445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 040394 606 FLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNL 643 (691)
Q Consensus 606 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 643 (691)
+..++...|++++|...++++++..|++...+..+..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 55555555566666666665555555555555444443
No 148
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.34 E-value=1.1e-06 Score=74.88 Aligned_cols=105 Identities=9% Similarity=0.029 Sum_probs=82.0
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 040394 533 VIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVP-SMKHYVCMVDLLARAGRLEEALEFMENM-PIEP-DVSLFGAFLHG 609 (691)
Q Consensus 533 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 609 (691)
..+..+...+...|++++|...|+.... ..| +...|..+..+|...|++++|++.+++. ...| +...+..+..+
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCV---LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH---cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 4455566677788888888888887643 345 3667778888888899999999888887 3334 55788888999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 040394 610 CGLYSRFDLGEVMIKKMLELHPDKACYYVLV 640 (691)
Q Consensus 610 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 640 (691)
+...|++++|...+++++++.|+++......
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 129 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANXPEFXELS 129 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCCcchHHH
Confidence 9999999999999999999999877665433
No 149
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.34 E-value=3.2e-06 Score=74.60 Aligned_cols=122 Identities=10% Similarity=0.104 Sum_probs=96.4
Q ss_pred hcccCCHHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHH-HHhcCCH-
Q 040394 542 CSHTGMVGEGWKCFYSMCRDFKFVP-SMKHYVCMVDLLARAGRLEEALEFMENM-PIE-PDVSLFGAFLHG-CGLYSRF- 616 (691)
Q Consensus 542 ~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~-~~~~g~~- 616 (691)
+...|++++|...++..... .| +...+..+...|...|++++|++.+++. ... .+...+..+... +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcc
Confidence 45678888888888876543 34 4678888899999999999999999887 333 356677778877 7788998
Q ss_pred -HHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCCCc
Q 040394 617 -DLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRGLS 666 (691)
Q Consensus 617 -~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 666 (691)
++|...++++++..|+++..+..++.+|...|++++|...++++.+....
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999999999998886543
No 150
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.33 E-value=8.6e-06 Score=65.74 Aligned_cols=109 Identities=12% Similarity=0.104 Sum_probs=79.2
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 040394 533 VIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVP-SMKHYVCMVDLLARAGRLEEALEFMENM-PIEP-DVSLFGAFLHG 609 (691)
Q Consensus 533 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 609 (691)
..+..+...+...|++++|...++..... .| +...+..+...+...|++++|.+.+++. ...| +...+..+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34455555666667777777777665432 33 3556666777777778888887777776 2233 56778888889
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 040394 610 CGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLY 644 (691)
Q Consensus 610 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 644 (691)
+...|++++|...++++.+..|+++..+..++.+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 99999999999999999999999888887776654
No 151
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.32 E-value=3.8e-06 Score=75.71 Aligned_cols=168 Identities=7% Similarity=0.001 Sum_probs=102.5
Q ss_pred HHhcCCHHHHHHHHHhcccC---CHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHH
Q 040394 476 YAKCGDAQSARMVFDAMREK---NTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGW 552 (691)
Q Consensus 476 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 552 (691)
....|+++.+.+.++.-.+. ....+..+...+...|++++|+..|++..+. .|+...+... ..+.-.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~~~~ 83 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILLDKK 83 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHHHHH
T ss_pred hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHHHHH
Confidence 34445555555555433321 3445666777777788888888888877763 2221100000 000000
Q ss_pred HHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 040394 553 KCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENM-PI-EPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELH 630 (691)
Q Consensus 553 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (691)
.. .....+..+..+|.+.|++++|++.+++. .. +.+...+..+..++...|++++|...++++++..
T Consensus 84 ---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 84 ---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp ---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred ---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 00 01245667778888888888888888887 33 3456788889999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhCCCcHHHH-HHHHHHHhCC
Q 040394 631 PDKACYYVLVSNLYASDGRWIRVN-QVRELMKQRG 664 (691)
Q Consensus 631 p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~g 664 (691)
|++...+..++.++...|+.+++. ..+..|...|
T Consensus 153 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 153 PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999888887 5566665544
No 152
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.32 E-value=2.1e-06 Score=72.98 Aligned_cols=92 Identities=4% Similarity=-0.042 Sum_probs=43.0
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHh
Q 040394 113 SFQVMIRWYFLNDLYKDIVEFYKCMRKRLKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAK 192 (691)
Q Consensus 113 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (691)
.+..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|...|+...+..|.++..|..+..+|.+
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 44444445555555555555555554442 22334444444444455555555555555554444444444444444444
Q ss_pred cCChHHHHHHHhc
Q 040394 193 CRDIGSSRQVFDE 205 (691)
Q Consensus 193 ~g~~~~A~~~~~~ 205 (691)
.|++++|...|++
T Consensus 117 lg~~~eA~~~~~~ 129 (151)
T 3gyz_A 117 LKAPLKAKECFEL 129 (151)
T ss_dssp TTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 4444444444433
No 153
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=1e-05 Score=68.65 Aligned_cols=98 Identities=13% Similarity=-0.010 Sum_probs=83.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 040394 567 SMKHYVCMVDLLARAGRLEEALEFMENM-PIEPD----VSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVS 641 (691)
Q Consensus 567 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 641 (691)
+...+..+...+...|++++|++.+++. ...|+ ...|..+...+...|++++|...++++++..|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 3667777888888999999999998887 66676 567888888888899999999999999999998888888999
Q ss_pred HHHHhCCCcHHHHHHHHHHHhCC
Q 040394 642 NLYASDGRWIRVNQVRELMKQRG 664 (691)
Q Consensus 642 ~~~~~~g~~~~A~~~~~~~~~~g 664 (691)
.+|...|++++|.+.+++..+..
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999999999999998887743
No 154
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.32 E-value=0.0004 Score=67.11 Aligned_cols=222 Identities=10% Similarity=-0.026 Sum_probs=141.3
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHcccC-ChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhc-
Q 040394 116 VMIRWYFLNDLYKDIVEFYKCMRKRLKEHDNFVFSKVLKACCELR-DIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKC- 193 (691)
Q Consensus 116 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 193 (691)
.+.......+..++|+++++.++... +-+..+|+.--..+...| +++++...++.++...+.+..+|+.-...+.+.
T Consensus 59 ~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~ 137 (349)
T 3q7a_A 59 YFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRIS 137 (349)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhc
Confidence 33333445556678888888888763 223345666555666666 588888999888888888888888888777776
Q ss_pred C-ChHHHHHHHhccCCC---ChhhHHHHHHHHHhCCChh--------HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC
Q 040394 194 R-DIGSSRQVFDETLDK---NVVSWTSMIAGYVQNDCAQ--------EGLVLFNRMREGFVEGNQITLGSLVTACAKLRA 261 (691)
Q Consensus 194 g-~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~ 261 (691)
+ +++++++.++++.+. |..+|+--.-.+.+.|.++ ++++.++++.+..+. |...|+.....+.+.++
T Consensus 138 ~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 138 PQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp CSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTT
T ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccc
Confidence 6 788888888887664 4556665555555555555 888888888776543 66677777777666665
Q ss_pred -------hhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCH--------------------HHHHHHHHhcC------
Q 040394 262 -------LHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNI--------------------RDARSVFDELC------ 308 (691)
Q Consensus 262 -------~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~~~------ 308 (691)
++++.+.+..++... +-|...|+-+-..+.+.|.. ....++..++.
T Consensus 217 ~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (349)
T 3q7a_A 217 AETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPE 295 (349)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCS
T ss_pred cccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccc
Confidence 566777777777664 23566666666556555543 22333333331
Q ss_pred ---CCChhHHHHHHHHHHhcCCchhHHHHHHHhhH
Q 040394 309 ---SIDLVSWTAMIVGYTQSGYPDKALKLFTDKKW 340 (691)
Q Consensus 309 ---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 340 (691)
.++...+..|+..|...|+.++|.++++.+.+
T Consensus 296 ~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 296 DTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp SCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 13444556666666666666666666666543
No 155
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.30 E-value=5.1e-06 Score=68.61 Aligned_cols=97 Identities=7% Similarity=0.011 Sum_probs=87.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 040394 568 MKHYVCMVDLLARAGRLEEALEFMENM-P-IEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYA 645 (691)
Q Consensus 568 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 645 (691)
...+..+...+...|++++|.+.+++. . .+.+...+..+...+...|++++|...++++.+..|+++..+..++.++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 567778888999999999999999997 3 33467788899999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHhCC
Q 040394 646 SDGRWIRVNQVRELMKQRG 664 (691)
Q Consensus 646 ~~g~~~~A~~~~~~~~~~g 664 (691)
..|++++|.+.+++..+..
T Consensus 92 ~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHS
T ss_pred HhCCHHHHHHHHHHHHhcC
Confidence 9999999999999998754
No 156
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.29 E-value=3e-06 Score=70.06 Aligned_cols=94 Identities=7% Similarity=0.000 Sum_probs=44.1
Q ss_pred HHhcccCCHHHHHHHHHHchhhcCCCCC-h---hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHH
Q 040394 540 SACSHTGMVGEGWKCFYSMCRDFKFVPS-M---KHYVCMVDLLARAGRLEEALEFMENM-PIEPD----VSLFGAFLHGC 610 (691)
Q Consensus 540 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~---~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~ 610 (691)
..+...|++++|...|+...+. .|+ . ..+..+..++.+.|++++|++.+++. ...|+ ...+..+..++
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3444555555555555554332 122 1 24444445555555555555555544 11222 23344444455
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchh
Q 040394 611 GLYSRFDLGEVMIKKMLELHPDKACY 636 (691)
Q Consensus 611 ~~~g~~~~A~~~~~~~~~~~p~~~~~ 636 (691)
...|++++|...++++++..|+++..
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCChHH
Confidence 55555555555555555555554433
No 157
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.29 E-value=6.3e-06 Score=74.46 Aligned_cols=132 Identities=10% Similarity=0.013 Sum_probs=70.7
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCC-C----
Q 040394 498 VTWSAMIGGYGMQGDGGGSLALFSDMLN----EEVQP-NEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVP-S---- 567 (691)
Q Consensus 498 ~~~~~li~~~~~~~~~~~A~~~~~~m~~----~g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p-~---- 567 (691)
..+..+...+...|++++|...+++..+ .|..| ....+..+...+...|++++|.+.+++......-.+ +
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 3444444445555555555555544443 11111 123344444455566666666666555433211111 1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040394 568 MKHYVCMVDLLARAGRLEEALEFMENM----PIEPD----VSLFGAFLHGCGLYSRFDLGEVMIKKMLEL 629 (691)
Q Consensus 568 ~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (691)
...+..+...+...|++++|.+.+++. ...++ ..++..+...+...|++++|...+++++++
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 234556666677777777776666665 11112 124566777788888888888888887764
No 158
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.27 E-value=0.00041 Score=67.09 Aligned_cols=125 Identities=13% Similarity=0.075 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCC-------HHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCCh--
Q 040394 515 GSLALFSDMLNEEVQPNEVIFTTILSACSHTGM-------VGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRL-- 584 (691)
Q Consensus 515 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-------~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~-- 584 (691)
++++.++++++.. +-|...|+..-..+.+.+. ++++++.+++.+. ..|+ ...|+-+-..+.+.|+.
T Consensus 185 eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~---~~P~n~SaW~Ylr~Ll~~~~~~~~ 260 (349)
T 3q7a_A 185 SELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIH---LIPHNVSAWNYLRGFLKHFSLPLV 260 (349)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCCcc
Confidence 5666666666643 2344445544444444443 4566666655432 2443 44555544445444442
Q ss_pred ------------------HHHHHHHHhC-CC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCCchhH
Q 040394 585 ------------------EEALEFMENM-PI-------EPDVSLFGAFLHGCGLYSRFDLGEVMIKKML-ELHPDKACYY 637 (691)
Q Consensus 585 ------------------~~A~~~~~~~-~~-------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~ 637 (691)
.+..++...+ +. .++...+..|+..|...|+.++|.++++.+. +.+|-...+|
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw 340 (349)
T 3q7a_A 261 PILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYW 340 (349)
T ss_dssp GGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred cccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHH
Confidence 2333343333 11 2566677777788888888888888888876 4677766666
Q ss_pred HHHHHH
Q 040394 638 VLVSNL 643 (691)
Q Consensus 638 ~~l~~~ 643 (691)
...+..
T Consensus 341 ~~~~~~ 346 (349)
T 3q7a_A 341 EFRRRE 346 (349)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 655443
No 159
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.26 E-value=3.9e-06 Score=70.47 Aligned_cols=91 Identities=13% Similarity=0.030 Sum_probs=69.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------C
Q 040394 572 VCMVDLLARAGRLEEALEFMENM-PIEPD-------------VSLFGAFLHGCGLYSRFDLGEVMIKKMLEL-------H 630 (691)
Q Consensus 572 ~~li~~~~~~g~~~~A~~~~~~~-~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~ 630 (691)
......+.+.|++++|++.|++. .+.|+ ...|..+..++.+.|++++|+..+++++++ +
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 33445555666666666666665 22222 237888888888889999999999999988 9
Q ss_pred CCCchhH----HHHHHHHHhCCCcHHHHHHHHHHHh
Q 040394 631 PDKACYY----VLVSNLYASDGRWIRVNQVRELMKQ 662 (691)
Q Consensus 631 p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 662 (691)
|++...| +..+.++...|++++|+..|++.++
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9988888 8999999999999999999988876
No 160
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.25 E-value=1.5e-05 Score=69.12 Aligned_cols=124 Identities=6% Similarity=0.003 Sum_probs=68.6
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHh
Q 040394 113 SFQVMIRWYFLNDLYKDIVEFYKCMRKRLKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAK 192 (691)
Q Consensus 113 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (691)
.|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++...+..+.+..++..+..++..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34555555666666666666666665542 23445555555666666666666666666666655555566666666666
Q ss_pred cCChHHHHHHHhccCC---CChhhHHH--HHHHHHhCCChhHHHHHHHHH
Q 040394 193 CRDIGSSRQVFDETLD---KNVVSWTS--MIAGYVQNDCAQEGLVLFNRM 237 (691)
Q Consensus 193 ~g~~~~A~~~~~~~~~---~~~~~~~~--li~~~~~~g~~~~A~~~~~~m 237 (691)
.|++++|...|++..+ .+...+.. ++..+...|++++|++.+...
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 6666666666655422 12233322 222244555666666655544
No 161
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.24 E-value=1e-05 Score=66.52 Aligned_cols=109 Identities=10% Similarity=-0.037 Sum_probs=80.1
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 040394 534 IFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEFMENM-PIEP-DVSLFGAFLHGC 610 (691)
Q Consensus 534 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 610 (691)
.+......+...|++++|...|++..+. .|+ ...|..+..+|.+.|++++|++.+++. ...| +...|..+..++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 4445555666777777777777765432 343 567777777888888888888887776 3334 466888888899
Q ss_pred HhcCCHHHHHHHHHHHHhcC------CCCchhHHHHHHHHH
Q 040394 611 GLYSRFDLGEVMIKKMLELH------PDKACYYVLVSNLYA 645 (691)
Q Consensus 611 ~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~ 645 (691)
...|++++|...+++++++. |++..+...+..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 99999999999999999988 887777777766543
No 162
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.24 E-value=4.8e-06 Score=79.74 Aligned_cols=95 Identities=6% Similarity=-0.171 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCC
Q 040394 349 TIASVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSP 428 (691)
Q Consensus 349 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p 428 (691)
.+..+...+...|++++|...++.+.+..+.+...+..+..+|.+.|++++|...+++..+.+ +.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---------------p~ 70 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD---------------GQ 70 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC---------------TT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---------------CC
Confidence 333444444455555555555555555555455555556666666666666666666555431 12
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 040394 429 DAVTLVSVISACASLGAVQVGSSLHAYSTK 458 (691)
Q Consensus 429 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 458 (691)
+...+..+..++...|++++|...++...+
T Consensus 71 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 71 SVKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444555555555555555555555444
No 163
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.22 E-value=7.1e-06 Score=69.21 Aligned_cols=106 Identities=11% Similarity=0.002 Sum_probs=80.6
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 040394 534 IFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEFMENM-PIEP-DVSLFGAFLHGC 610 (691)
Q Consensus 534 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 610 (691)
.+..+...+...|++++|...|+..... .|+ ...|..+..+|.+.|++++|++.+++. ...| +...+..+..++
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3444555677788888888888876433 443 667777888888888888888888887 3333 556788888899
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 040394 611 GLYSRFDLGEVMIKKMLELHPDKACYYVLVSN 642 (691)
Q Consensus 611 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 642 (691)
...|++++|...++++++..|+++........
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 128 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALAAR 128 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence 99999999999999999999988777655433
No 164
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.22 E-value=0.00035 Score=67.19 Aligned_cols=216 Identities=13% Similarity=0.009 Sum_probs=143.5
Q ss_pred ccCcH-HHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCC----------HHHHHHHHHhccc---CCHhHHHHHHHHH
Q 040394 442 SLGAV-QVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGD----------AQSARMVFDAMRE---KNTVTWSAMIGGY 507 (691)
Q Consensus 442 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~---~~~~~~~~li~~~ 507 (691)
+.|.. ++|..+...+...+ |.+..+++.--..+...+. +++++.+++.+.. ++..+|+.-...+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34443 47788888888777 5666666655444444333 5677777777664 3666777766666
Q ss_pred hcCC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCC-HHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHHhc--
Q 040394 508 GMQG--DGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGM-VGEGWKCFYSMCRDFKFVP-SMKHYVCMVDLLARA-- 581 (691)
Q Consensus 508 ~~~~--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~-- 581 (691)
...+ ++++++.+++++.+.. +-|...|+.--.++...|. ++++++.++.+++. .| |...|+....++.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~---~p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---NFSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHHSC
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhhh
Confidence 6666 4788888888888864 3455666665555666666 58888888877543 34 355666655555444
Q ss_pred ------------CChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhcCCCCchh
Q 040394 582 ------------GRLEEALEFMENM--PIEPDVSLFGAFLHGCGLY-----------SRFDLGEVMIKKMLELHPDKACY 636 (691)
Q Consensus 582 ------------g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~p~~~~~ 636 (691)
+.++++++.+.+. ..+-|...|+-+-..+.+. +.++++++.++++++..|++.-.
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~ 274 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWC 274 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred ccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchH
Confidence 4577888888777 3344667777666666554 45788999999999999998655
Q ss_pred HHHHHHH---HHhCCCcHHHHHHHHHHHhC
Q 040394 637 YVLVSNL---YASDGRWIRVNQVRELMKQR 663 (691)
Q Consensus 637 ~~~l~~~---~~~~g~~~~A~~~~~~~~~~ 663 (691)
+..++.+ ....|..+++...++++.+.
T Consensus 275 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 275 LLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 5444332 22467788888888888764
No 165
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.20 E-value=1.4e-05 Score=69.32 Aligned_cols=95 Identities=5% Similarity=-0.017 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 040394 568 MKHYVCMVDLLARAGRLEEALEFMENM-PIEP-DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYA 645 (691)
Q Consensus 568 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 645 (691)
...+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344555555566666666666666655 2222 44555556666666666666666666666666666666666666666
Q ss_pred hCCCcHHHHHHHHHHHh
Q 040394 646 SDGRWIRVNQVRELMKQ 662 (691)
Q Consensus 646 ~~g~~~~A~~~~~~~~~ 662 (691)
..|++++|.+.+++.++
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 66666666666665554
No 166
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.19 E-value=1.4e-06 Score=70.73 Aligned_cols=91 Identities=12% Similarity=0.093 Sum_probs=43.9
Q ss_pred cCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 040394 545 TGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEFMENM-PIEP-DVSLFGAFLHGCGLYSRFDLGEV 621 (691)
Q Consensus 545 ~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 621 (691)
.|++++|+..|++..+...-.|+ ...+..+..+|.+.|++++|++.+++. ...| +...+..+..++...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45556666666654321000232 344555555555555555555555555 2222 33455555555555555555555
Q ss_pred HHHHHHhcCCCCch
Q 040394 622 MIKKMLELHPDKAC 635 (691)
Q Consensus 622 ~~~~~~~~~p~~~~ 635 (691)
.++++++..|+++.
T Consensus 83 ~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 83 LLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHCCCHH
T ss_pred HHHHHHHhCCCcHH
Confidence 55555555555543
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.18 E-value=6.6e-06 Score=67.93 Aligned_cols=96 Identities=8% Similarity=0.039 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------chhHHH
Q 040394 569 KHYVCMVDLLARAGRLEEALEFMENM-P-IEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDK-------ACYYVL 639 (691)
Q Consensus 569 ~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~ 639 (691)
..+..+...+...|++++|...+++. . .+.+...+..+...+...|++++|...++++.+..|++ +.++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 45666777778888888888888776 2 33456778888888888999999999999998887766 778888
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHhCC
Q 040394 640 VSNLYASDGRWIRVNQVRELMKQRG 664 (691)
Q Consensus 640 l~~~~~~~g~~~~A~~~~~~~~~~g 664 (691)
++.++...|++++|.+.+++..+..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC
Confidence 8899999999999999998888743
No 168
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.15 E-value=4.8e-05 Score=78.08 Aligned_cols=120 Identities=8% Similarity=-0.095 Sum_probs=64.3
Q ss_pred hcccCCHHHHHHHHHHchhh---cCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-----C--CCCC-HHHHHHHHHH
Q 040394 542 CSHTGMVGEGWKCFYSMCRD---FKFVPS-MKHYVCMVDLLARAGRLEEALEFMENM-----P--IEPD-VSLFGAFLHG 609 (691)
Q Consensus 542 ~~~~g~~~~A~~~~~~m~~~---~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-----~--~~p~-~~~~~~l~~~ 609 (691)
+...|+++.|..+++..... .+..+. ..++..+...|...|++++|.+++++. + .++. ..++..++..
T Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (434)
T 4b4t_Q 105 EQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKV 184 (434)
T ss_dssp CSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 33455566665555543221 122222 334555666666666666666666554 1 1111 2355666666
Q ss_pred HHhcCCHHHHHHHHHHHHhcC---CCC----chhHHHHHHHHHhCCCcHHHHHHHHHHH
Q 040394 610 CGLYSRFDLGEVMIKKMLELH---PDK----ACYYVLVSNLYASDGRWIRVNQVRELMK 661 (691)
Q Consensus 610 ~~~~g~~~~A~~~~~~~~~~~---p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 661 (691)
|...|++++|..+++++.... |+. ..++..++.++...|++++|...+....
T Consensus 185 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 185 YHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 666777777777776666532 221 1344555666666677777766655554
No 169
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.15 E-value=7.3e-06 Score=71.01 Aligned_cols=101 Identities=16% Similarity=0.053 Sum_probs=53.2
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHchhhcCC---------------CCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 040394 534 IFTTILSACSHTGMVGEGWKCFYSMCRDFKF---------------VPS-MKHYVCMVDLLARAGRLEEALEFMENM-PI 596 (691)
Q Consensus 534 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~---------------~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 596 (691)
.+...-..+.+.|++++|+..|.+.+..... .|. ...|..+..+|.+.|++++|+..+++. ..
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4445555666677777777777665332000 111 234555555555555555555555554 22
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 040394 597 EP-DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKA 634 (691)
Q Consensus 597 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 634 (691)
.| +...|..+..++...|++++|...++++++++|+++
T Consensus 93 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 93 EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 22 344555555555555555555555555555555554
No 170
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.11 E-value=4.3e-06 Score=75.35 Aligned_cols=151 Identities=11% Similarity=0.036 Sum_probs=85.5
Q ss_pred HHHHHhcCCChHHHHHHhccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCc----------------
Q 040394 86 LVSMYGSFGHVKYARSVFDSMPN---PDFYSFQVMIRWYFLNDLYKDIVEFYKCMRKRLKEHDN---------------- 146 (691)
Q Consensus 86 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---------------- 146 (691)
.+......|.++.|.+.++...+ .....+..+...+...|++++|+..|++..+.. +.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHH
Confidence 34445556677777777654332 234467777888888999999999999888752 1122
Q ss_pred chHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhccCC---CChhhHHHHHHHHHh
Q 040394 147 FVFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDETLD---KNVVSWTSMIAGYVQ 223 (691)
Q Consensus 147 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 223 (691)
..+..+..++...|++++|...++...+..+.+..++..+..+|...|++++|...|++..+ .+...+..+..++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 45666666677777777777777777777666666777777777777777777766665422 244455555555555
Q ss_pred CCChhHHH-HHHHHH
Q 040394 224 NDCAQEGL-VLFNRM 237 (691)
Q Consensus 224 ~g~~~~A~-~~~~~m 237 (691)
.++..++. ..+..|
T Consensus 169 ~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 169 LKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHC---------
T ss_pred HHHHHHHHHHHHHHH
Confidence 55544444 334443
No 171
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.11 E-value=1.9e-05 Score=65.95 Aligned_cols=111 Identities=10% Similarity=-0.033 Sum_probs=78.9
Q ss_pred CCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHH
Q 040394 530 PNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEFMENM-PIEP-DVSLFGAF 606 (691)
Q Consensus 530 p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 606 (691)
.+...+..+...+...|++++|...|+..... .|+ ...+..+..++...|++++|+..+++. ...| +...|..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 34556666666777777777777777766433 343 566777777788888888888877776 3233 56688888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC-----CchhHHHHHHH
Q 040394 607 LHGCGLYSRFDLGEVMIKKMLELHPD-----KACYYVLVSNL 643 (691)
Q Consensus 607 ~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~ 643 (691)
..++...|++++|...++++++..|+ +......+..+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~ 125 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 125 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHH
Confidence 88888999999999999999988777 44455544443
No 172
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.10 E-value=1.8e-05 Score=81.54 Aligned_cols=144 Identities=10% Similarity=0.015 Sum_probs=98.7
Q ss_pred HhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHH
Q 040394 497 TVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVD 576 (691)
Q Consensus 497 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 576 (691)
...|..+...+.+.|++++|+..|++.++. .|+...+ . .+...+ ... -....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~-~~~--------~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA-SES--------FLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH-HHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH-HHH--------HHHHHHHHHHH
Confidence 446666777777777777777777777663 2221000 0 000000 000 01356777888
Q ss_pred HHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHH
Q 040394 577 LLARAGRLEEALEFMENM-PIE-PDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVN 654 (691)
Q Consensus 577 ~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 654 (691)
+|.+.|++++|++.+++. ... .+...|..+..+|...|++++|+..|+++++++|++...+..++.++.+.|+++++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999888887 333 356788899999999999999999999999999999999999999999999998886
Q ss_pred H-HHHHHHh
Q 040394 655 Q-VRELMKQ 662 (691)
Q Consensus 655 ~-~~~~~~~ 662 (691)
+ .++.|..
T Consensus 406 ~~~~~~~f~ 414 (457)
T 1kt0_A 406 RRIYANMFK 414 (457)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHh
Confidence 4 4565544
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.08 E-value=1e-05 Score=83.89 Aligned_cols=115 Identities=10% Similarity=-0.041 Sum_probs=91.7
Q ss_pred HhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 040394 541 ACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEFMENM-PIEP-DVSLFGAFLHGCGLYSRFD 617 (691)
Q Consensus 541 ~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 617 (691)
.+.+.|++++|.+.+++..+. .|+ ...+..+..+|.+.|++++|++.+++. ...| +...|..+..++...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 456678888888888876433 454 677888888888899999998888887 4444 5678888999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHH--HHhCCCcHHHHHHHH
Q 040394 618 LGEVMIKKMLELHPDKACYYVLVSNL--YASDGRWIRVNQVRE 658 (691)
Q Consensus 618 ~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 658 (691)
+|...++++++..|++...+..++.+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999888888 888899999999987
No 174
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.08 E-value=1.1e-05 Score=69.56 Aligned_cols=93 Identities=14% Similarity=0.087 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCch
Q 040394 570 HYVCMVDLLARAGRLEEALEFMENM----PIEPD----VSLFGAFLHGCGLYSRFDLGEVMIKKMLELHP------DKAC 635 (691)
Q Consensus 570 ~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p------~~~~ 635 (691)
.+..+...+...|++++|.+.+++. ...++ ...+..+...+...|++++|...++++++..+ ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4445555666666666666665554 11111 34566777778888899999888888887422 1235
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHHh
Q 040394 636 YYVLVSNLYASDGRWIRVNQVRELMKQ 662 (691)
Q Consensus 636 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 662 (691)
.+..++.++...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 677888899999999999999888765
No 175
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.06 E-value=6.6e-06 Score=81.06 Aligned_cols=150 Identities=7% Similarity=-0.034 Sum_probs=86.5
Q ss_pred HhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHH
Q 040394 497 TVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVD 576 (691)
Q Consensus 497 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 576 (691)
...|..+...+.+.|++++|+..|++.... .|+... +...++.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 456777888888999999999999998873 565442 233444444443322 136778889
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH-HHhCCCcHHH
Q 040394 577 LLARAGRLEEALEFMENM-PIEP-DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNL-YASDGRWIRV 653 (691)
Q Consensus 577 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~A 653 (691)
+|.+.|++++|++.+++. ...| +...|..+..+|...|++++|+..|++++++.|+++..+..+..+ ....+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987 4344 667899999999999999999999999999999999999888887 4455778888
Q ss_pred HHHHHHHHhCCCc
Q 040394 654 NQVRELMKQRGLS 666 (691)
Q Consensus 654 ~~~~~~~~~~g~~ 666 (691)
...+++|.+....
T Consensus 319 ~~~~~~~l~~~p~ 331 (338)
T 2if4_A 319 KEMYKGIFKGKDE 331 (338)
T ss_dssp -------------
T ss_pred HHHHHHhhCCCCC
Confidence 8899888775443
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.06 E-value=5.5e-05 Score=62.24 Aligned_cols=93 Identities=12% Similarity=0.124 Sum_probs=76.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---chhHHHHHHH
Q 040394 572 VCMVDLLARAGRLEEALEFMENM-PIEPD-V---SLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDK---ACYYVLVSNL 643 (691)
Q Consensus 572 ~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~ 643 (691)
..+...+.+.|++++|.+.+++. ...|+ . ..+..+..++...|++++|...++++++..|++ +..+..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34567788899999999998887 32333 2 477778888889999999999999999999998 6778889999
Q ss_pred HHhCCCcHHHHHHHHHHHhCC
Q 040394 644 YASDGRWIRVNQVRELMKQRG 664 (691)
Q Consensus 644 ~~~~g~~~~A~~~~~~~~~~g 664 (691)
+...|++++|...++++.+..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999999888754
No 177
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.03 E-value=4.1e-05 Score=75.33 Aligned_cols=145 Identities=12% Similarity=0.079 Sum_probs=99.5
Q ss_pred CChHHHHHHhccCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC--------------cchHHHHHHHH
Q 040394 94 GHVKYARSVFDSMPN--P-DFYSFQVMIRWYFLNDLYKDIVEFYKCMRKRLKEHD--------------NFVFSKVLKAC 156 (691)
Q Consensus 94 g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~ll~~~ 156 (691)
+++++|...|+...+ | +...|..+...+.+.|++++|+..|++..+...... ...|..+..++
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555544432 2 345778888888889999999999998887632211 35677777777
Q ss_pred cccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhccCC---CChhhHHHHHHHHHhCCChhHH-HH
Q 040394 157 CELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDETLD---KNVVSWTSMIAGYVQNDCAQEG-LV 232 (691)
Q Consensus 157 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A-~~ 232 (691)
.+.|++++|...++..++..+.+..++..+..+|...|++++|...|++..+ .+..++..+..++.+.|+.++| ..
T Consensus 207 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~ 286 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKK 286 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888777766777777777777777777777777776532 3555667777777777777766 34
Q ss_pred HHHHHH
Q 040394 233 LFNRMR 238 (691)
Q Consensus 233 ~~~~m~ 238 (691)
+|+.|.
T Consensus 287 ~~~~~~ 292 (336)
T 1p5q_A 287 LYANMF 292 (336)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555553
No 178
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.03 E-value=5e-05 Score=62.44 Aligned_cols=109 Identities=8% Similarity=-0.042 Sum_probs=66.4
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C----CCCC----HHHHHH
Q 040394 535 FTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENM-P----IEPD----VSLFGA 605 (691)
Q Consensus 535 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~----~~p~----~~~~~~ 605 (691)
+..+...+...|++++|...+++.... .+.+...+..+...+...|++++|.+.+++. . ..++ ..++..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 334444445555555555555544322 1122445555555666666666666666555 1 1222 556777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 040394 606 FLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYAS 646 (691)
Q Consensus 606 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 646 (691)
+...+...|++++|...++++.+..|+ +.....+..+...
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~ 124 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH
Confidence 888888899999999999999998884 6666666655443
No 179
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.02 E-value=0.0016 Score=62.56 Aligned_cols=230 Identities=9% Similarity=0.010 Sum_probs=158.6
Q ss_pred hcCCh-HHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHH-HHHHHHHHHhccCc----------HHHHHHHHHHHHHcC
Q 040394 393 KCHVI-ADARYIFETTSEKDVIAWNSIISGLDDNVSPDAV-TLVSVISACASLGA----------VQVGSSLHAYSTKQG 460 (691)
Q Consensus 393 ~~g~~-~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~-~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~ 460 (691)
+.|.+ ++|+..++.+... .|+.. +|+.--..+...+. ++.+..+++.+....
T Consensus 41 ~~~e~s~eaL~~t~~~L~~----------------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~ 104 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA----------------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 104 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT----------------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HcCCCCHHHHHHHHHHHHH----------------CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence 44544 4788888888754 34433 34332222222222 678889999999887
Q ss_pred CCCCchhHHHHHHHHHHhcC--CHHHHHHHHHhccc---CCHhHHHHHHHHHhcCCC-hHHHHHHHHHHHHCCCCCCHHH
Q 040394 461 LLSSNVYVGTALLNFYAKCG--DAQSARMVFDAMRE---KNTVTWSAMIGGYGMQGD-GGGSLALFSDMLNEEVQPNEVI 534 (691)
Q Consensus 461 ~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~g~~p~~~~ 534 (691)
|.+..+++.-...+.+.+ .+++++.+++.+.+ .|...|+.-...+...|. ++++++.++++++.. +-|...
T Consensus 105 --PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SA 181 (331)
T 3dss_A 105 --PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSS 181 (331)
T ss_dssp --TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHH
T ss_pred --CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHH
Confidence 788889888888888888 48999999999885 477788877777777887 589999999999864 345555
Q ss_pred HHHHHHHhccc--------------CCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhc-----------CChHHHH
Q 040394 535 FTTILSACSHT--------------GMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARA-----------GRLEEAL 588 (691)
Q Consensus 535 ~~~ll~~~~~~--------------g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~-----------g~~~~A~ 588 (691)
|+.....+... +.++++++.+..... ..|+ ...|+-+-..+.+. +.+++++
T Consensus 182 W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~---~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el 258 (331)
T 3dss_A 182 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSEL 258 (331)
T ss_dssp HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHH
Confidence 55544433332 457889998887653 4666 55666554555444 4578888
Q ss_pred HHHHhC-CCCCCH-HHHHHHHH---HHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 040394 589 EFMENM-PIEPDV-SLFGAFLH---GCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLY 644 (691)
Q Consensus 589 ~~~~~~-~~~p~~-~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 644 (691)
+.++++ ...||. ..+.+++. +....|..++....+.++.+++|-....|.-+..-+
T Consensus 259 ~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 259 ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 888888 556665 23322222 122467888999999999999999888887765543
No 180
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.01 E-value=0.0001 Score=60.55 Aligned_cols=101 Identities=11% Similarity=0.022 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-C-------HhHH
Q 040394 431 VTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMRE--K-N-------TVTW 500 (691)
Q Consensus 431 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~-------~~~~ 500 (691)
.++..+...+.+.|++++|...|++..+.. |.+...+..+..+|.+.|++++|+..+++..+ | + ..+|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 456677778888888888888888888877 67788888888888888888888888877653 1 1 1256
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHH
Q 040394 501 SAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIF 535 (691)
Q Consensus 501 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 535 (691)
..+..++...|++++|++.|++..+. .||..+.
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 66667777777777777777777663 4555443
No 181
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.99 E-value=0.00031 Score=72.00 Aligned_cols=192 Identities=7% Similarity=-0.055 Sum_probs=141.9
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCCCCc---------------hhHHHHHHHHHHhcCCHHHHHHHHHhccc-----CC
Q 040394 437 ISACASLGAVQVGSSLHAYSTKQGLLSSN---------------VYVGTALLNFYAKCGDAQSARMVFDAMRE-----KN 496 (691)
Q Consensus 437 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~ 496 (691)
...+.+.|++++|.+.+..+.+......+ ...+..+...|...|++++|.+.+....+ ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34567889999999999999886531111 12467789999999999999999988764 11
Q ss_pred H----hHHHHHHHHHhcCCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC
Q 040394 497 T----VTWSAMIGGYGMQGDGGGSLALFSDMLN----EEVQPN-EVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS 567 (691)
Q Consensus 497 ~----~~~~~li~~~~~~~~~~~A~~~~~~m~~----~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~ 567 (691)
. ...+.+...+...|+.+.|..++++... .+..+. ..++..+...+...|++++|..++++......-..+
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 2334444555668899999999888764 333444 356777888999999999999999887554322222
Q ss_pred ----hhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040394 568 ----MKHYVCMVDLLARAGRLEEALEFMENM-------PIEPD--VSLFGAFLHGCGLYSRFDLGEVMIKKMLE 628 (691)
Q Consensus 568 ----~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (691)
...+..++..|...|++++|..++++. +.+|. ...+..+...+...|++++|...+.++++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 457888999999999999999998876 11222 23566677777889999999999999886
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.98 E-value=9.5e-06 Score=65.69 Aligned_cols=84 Identities=10% Similarity=0.095 Sum_probs=66.5
Q ss_pred hcCChHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHH
Q 040394 580 RAGRLEEALEFMENM-PI---EP-DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVN 654 (691)
Q Consensus 580 ~~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 654 (691)
..|++++|++.|++. .. .| +...+..+...+...|++++|+..++++++..|+++.++..++.++...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 357788888888887 44 24 34578888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC
Q 040394 655 QVRELMKQR 663 (691)
Q Consensus 655 ~~~~~~~~~ 663 (691)
+.+++.++.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 998888764
No 183
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.98 E-value=2.6e-05 Score=80.17 Aligned_cols=123 Identities=12% Similarity=0.038 Sum_probs=90.9
Q ss_pred hcccCCHHHHHHHHHHchhhcC--CC---CC-hhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCCH-HHHHH
Q 040394 542 CSHTGMVGEGWKCFYSMCRDFK--FV---PS-MKHYVCMVDLLARAGRLEEALEFMENM---------PIEPDV-SLFGA 605 (691)
Q Consensus 542 ~~~~g~~~~A~~~~~~m~~~~~--~~---p~-~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ 605 (691)
+...|++++|+.++++...... +. |+ ..+++.|..+|...|++++|+.++++. ...|+. .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3455666666666655433221 22 22 456778888888888888888877776 234544 47899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh-----cCCCCchhH---HHHHHHHHhCCCcHHHHHHHHHHHhCC
Q 040394 606 FLHGCGLYSRFDLGEVMIKKMLE-----LHPDKACYY---VLVSNLYASDGRWIRVNQVRELMKQRG 664 (691)
Q Consensus 606 l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~g 664 (691)
|...|...|++++|+.+++++++ +.|+++.+- ..+..++.+.|++++|...+.+++++-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987 577776544 577888889999999999999998754
No 184
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.98 E-value=6.5e-05 Score=59.73 Aligned_cols=92 Identities=7% Similarity=0.000 Sum_probs=42.7
Q ss_pred hHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhccCC---C--ChhhHHHHHHHHH
Q 040394 148 VFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDETLD---K--NVVSWTSMIAGYV 222 (691)
Q Consensus 148 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~--~~~~~~~li~~~~ 222 (691)
.+..+...+...|++++|...++...+..+.+..++..+...+...|++++|...|++..+ . +...|..+...+.
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence 3444444444444555555555544444444444444444444444444444444443311 1 2334444444555
Q ss_pred hC-CChhHHHHHHHHHHh
Q 040394 223 QN-DCAQEGLVLFNRMRE 239 (691)
Q Consensus 223 ~~-g~~~~A~~~~~~m~~ 239 (691)
.. |++++|.+.+++...
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp TCSSCSHHHHHHHHHHGG
T ss_pred HHhCCHHHHHHHHHHHhh
Confidence 55 555555555555444
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.97 E-value=3.5e-05 Score=76.72 Aligned_cols=138 Identities=9% Similarity=0.070 Sum_probs=103.2
Q ss_pred HhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCC-hhHHHHHH
Q 040394 497 TVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMV 575 (691)
Q Consensus 497 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li 575 (691)
...|..+...+.+.|++++|+..|++.++. .|+.. .....+++ ....|. ...|..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~~----------~~~~~~~~~~~~nla 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADG----------AKLQPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHH----------GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHHH----------HHHHHHHHHHHHHHH
Confidence 345667777777888888888888777652 11100 00001110 012333 56788889
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHH
Q 040394 576 DLLARAGRLEEALEFMENM-PIEP-DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRV 653 (691)
Q Consensus 576 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 653 (691)
.+|.+.|++++|++.+++. ...| +...|..+..++...|++++|...+++++++.|++..++..++.++...++.+++
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988 5555 5678899999999999999999999999999999999999999999998888877
Q ss_pred HHH
Q 040394 654 NQV 656 (691)
Q Consensus 654 ~~~ 656 (691)
.+.
T Consensus 361 ~k~ 363 (370)
T 1ihg_A 361 EKA 363 (370)
T ss_dssp HHC
T ss_pred HHH
Confidence 654
No 186
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.96 E-value=3.5e-05 Score=60.14 Aligned_cols=65 Identities=14% Similarity=0.009 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhC
Q 040394 599 DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQR 663 (691)
Q Consensus 599 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 663 (691)
+...+..+...+...|++++|+..++++++.+|+++..+..++.+|...|++++|.+.+++.++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55677888888888888888888888888888888888888888888888888888888877653
No 187
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.96 E-value=3.7e-06 Score=67.26 Aligned_cols=93 Identities=8% Similarity=-0.039 Sum_probs=76.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------chhHH
Q 040394 567 SMKHYVCMVDLLARAGRLEEALEFMENM-PIE-PDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDK------ACYYV 638 (691)
Q Consensus 567 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ 638 (691)
+...+..+...+.+.|++++|++.+++. ... .+...|..+..++...|++++|+..++++++..|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 3456677788888889999998888887 333 356788889999999999999999999999999998 77788
Q ss_pred HHHHHHHhCCCcHHHHHHHHH
Q 040394 639 LVSNLYASDGRWIRVNQVREL 659 (691)
Q Consensus 639 ~l~~~~~~~g~~~~A~~~~~~ 659 (691)
.++.++...|++++|.+.+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888888888877665543
No 188
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.87 E-value=3.7e-05 Score=61.89 Aligned_cols=63 Identities=13% Similarity=0.093 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHh
Q 040394 600 VSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQ 662 (691)
Q Consensus 600 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 662 (691)
...+..+...+...|++++|+..++++++..|++...+..++.+|...|++++|...+++..+
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555555555555555555555555555555443
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.87 E-value=3.1e-05 Score=66.95 Aligned_cols=94 Identities=7% Similarity=0.001 Sum_probs=67.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CC------------------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 040394 571 YVCMVDLLARAGRLEEALEFMENM-PI------------------EP-DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELH 630 (691)
Q Consensus 571 ~~~li~~~~~~g~~~~A~~~~~~~-~~------------------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (691)
+......+.+.|++++|++.|++. .. .| +...|..+..++.+.|++++|+..++++++++
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 344566677778888887777765 21 12 12466777777777888888888888888888
Q ss_pred CCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCC
Q 040394 631 PDKACYYVLVSNLYASDGRWIRVNQVRELMKQRG 664 (691)
Q Consensus 631 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 664 (691)
|+++..+..++.+|...|++++|...+++.++..
T Consensus 94 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 94 ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 8888888888888888888888888887776643
No 190
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.87 E-value=4.7e-05 Score=61.93 Aligned_cols=92 Identities=4% Similarity=-0.143 Sum_probs=49.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhc
Q 040394 114 FQVMIRWYFLNDLYKDIVEFYKCMRKRLKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKC 193 (691)
Q Consensus 114 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (691)
+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|+.++|...+++.++..+.+...+..+..+|...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4444455555566666666665555542 224445555555555555666666666555555555555555555555555
Q ss_pred CChHHHHHHHhcc
Q 040394 194 RDIGSSRQVFDET 206 (691)
Q Consensus 194 g~~~~A~~~~~~~ 206 (691)
|++++|...|++.
T Consensus 99 g~~~~A~~~~~~a 111 (121)
T 1hxi_A 99 HNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 5555555555543
No 191
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.85 E-value=0.0001 Score=56.20 Aligned_cols=73 Identities=12% Similarity=0.060 Sum_probs=63.1
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCCCccCCC
Q 040394 597 EPDVSLFGAFLHGCGLYSR---FDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRGLSKSPG 670 (691)
Q Consensus 597 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 670 (691)
++|...+..+..++...++ .++|..+++++++.+|+++.....++..+.+.|++++|++.|+++++.... .|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc
Confidence 4566777788888765444 799999999999999999999999999999999999999999999998765 554
No 192
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.85 E-value=4.6e-05 Score=65.50 Aligned_cols=61 Identities=10% Similarity=0.037 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 040394 570 HYVCMVDLLARAGRLEEALEFMENM-------PIEP-DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELH 630 (691)
Q Consensus 570 ~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (691)
.+..+...+...|++++|.+.+++. +..+ ...++..+...+...|++++|...++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 4455556666666666666665554 1111 12356677777888888888888888887653
No 193
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.82 E-value=8.2e-05 Score=56.60 Aligned_cols=81 Identities=16% Similarity=0.215 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 040394 568 MKHYVCMVDLLARAGRLEEALEFMENM-PI-EPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYA 645 (691)
Q Consensus 568 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 645 (691)
...+..+...+...|++++|++.+++. .. +.+...+..+...+...|++++|...++++.+..|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 445666777777888888888887776 22 3356677888888888889999999999988888888888888888776
Q ss_pred hCC
Q 040394 646 SDG 648 (691)
Q Consensus 646 ~~g 648 (691)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 544
No 194
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.82 E-value=8.7e-05 Score=76.81 Aligned_cols=114 Identities=12% Similarity=0.066 Sum_probs=66.3
Q ss_pred HHHhcCCHHHHHHHHHhccc---CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHH
Q 040394 475 FYAKCGDAQSARMVFDAMRE---KNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEG 551 (691)
Q Consensus 475 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A 551 (691)
.+.+.|++++|.+.|++..+ .+...|..+..+|.+.|++++|++.+++..+.. +-+...+..+..++...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 45566777777777776553 245666667777777777777777777776642 22345566666666677777777
Q ss_pred HHHHHHchhhcCCCCC-hhHHHHHHHH--HHhcCChHHHHHHHH
Q 040394 552 WKCFYSMCRDFKFVPS-MKHYVCMVDL--LARAGRLEEALEFME 592 (691)
Q Consensus 552 ~~~~~~m~~~~~~~p~-~~~~~~li~~--~~~~g~~~~A~~~~~ 592 (691)
.+.+++..+. .|+ ...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777665433 333 3344444444 566666666666666
No 195
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.79 E-value=0.0011 Score=69.95 Aligned_cols=136 Identities=8% Similarity=-0.051 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC--CHHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHHhcC-ChHHHH
Q 040394 513 GGGSLALFSDMLNEEVQPNEVIFTTILSACSHTG--MVGEGWKCFYSMCRDFKFVP-SMKHYVCMVDLLARAG-RLEEAL 588 (691)
Q Consensus 513 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g--~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g-~~~~A~ 588 (691)
++++++.++++.+.. +-+...|..--.++.+.+ +++++++.++++.+. .| |...|+.-..++.+.| .+++++
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el 164 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEEL 164 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHH
Confidence 555666666665532 223344444444445555 456666666666432 33 3555555555556666 667777
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHH
Q 040394 589 EFMENM-PIEP-DVSLFGAFLHGCGLY--------------SRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIR 652 (691)
Q Consensus 589 ~~~~~~-~~~p-~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 652 (691)
+.++++ ...| |...|+.....+.+. +.++++.+.+++++..+|++...|..+..++.+.|+.++
T Consensus 165 ~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 165 AFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 777776 3333 456666666655442 568999999999999999999999999999999888655
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.74 E-value=0.00012 Score=72.06 Aligned_cols=152 Identities=9% Similarity=-0.055 Sum_probs=80.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc
Q 040394 465 NVYVGTALLNFYAKCGDAQSARMVFDAMREKNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSH 544 (691)
Q Consensus 465 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 544 (691)
....+..+...+.+.|++++|...|++....+.... .+...++.+++...+. ...|..+..++.+
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~ 242 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHH
Confidence 355677788888999999999999998764221111 1223344444433221 1356777778888
Q ss_pred cCCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHH-HHhcCCHHHHH
Q 040394 545 TGMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEFMENM-PIEPDV-SLFGAFLHG-CGLYSRFDLGE 620 (691)
Q Consensus 545 ~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~-~~~~g~~~~A~ 620 (691)
.|++++|+..+++.++ +.|+ ...|..+..+|...|++++|++.|++. ...|+. ..+..+... ....+..+.+.
T Consensus 243 ~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 243 LKRYDEAIGHCNIVLT---EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred cCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987754 3454 678888899999999999999999988 555644 345555444 23467788889
Q ss_pred HHHHHHHhcCCCCc
Q 040394 621 VMIKKMLELHPDKA 634 (691)
Q Consensus 621 ~~~~~~~~~~p~~~ 634 (691)
..++++++..|+++
T Consensus 320 ~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 320 EMYKGIFKGKDEGG 333 (338)
T ss_dssp --------------
T ss_pred HHHHHhhCCCCCCC
Confidence 99999999888864
No 197
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.73 E-value=8.6e-05 Score=76.50 Aligned_cols=98 Identities=7% Similarity=-0.101 Sum_probs=81.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 040394 568 MKHYVCMVDLLARAGRLEEALEFMENM-PIEPD----------------VSLFGAFLHGCGLYSRFDLGEVMIKKMLELH 630 (691)
Q Consensus 568 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (691)
...+..+...|.+.|++++|+..|++. ...|+ ...|..+..++.+.|++++|+..++++++++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 345556666777777777777777766 22222 4788889999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCCC
Q 040394 631 PDKACYYVLVSNLYASDGRWIRVNQVRELMKQRGL 665 (691)
Q Consensus 631 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 665 (691)
|++...+..++.+|...|++++|+..|++.++...
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P 382 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999988643
No 198
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.72 E-value=4.6e-05 Score=63.98 Aligned_cols=72 Identities=15% Similarity=0.040 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CC-------CCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh
Q 040394 570 HYVCMVDLLARAGRLEEALEFMENM-PI-------EPDV-SLF----GAFLHGCGLYSRFDLGEVMIKKMLELHPDKACY 636 (691)
Q Consensus 570 ~~~~li~~~~~~g~~~~A~~~~~~~-~~-------~p~~-~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 636 (691)
.|..+..++.+.|++++|+..+++. .. .|+. ..| .....++...|++++|+..|++++++.|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 6666777777777777777766665 33 7765 477 889999999999999999999999999998766
Q ss_pred HHHHH
Q 040394 637 YVLVS 641 (691)
Q Consensus 637 ~~~l~ 641 (691)
..-+.
T Consensus 139 ~~~~~ 143 (159)
T 2hr2_A 139 TPGKE 143 (159)
T ss_dssp CTTHH
T ss_pred HHHHH
Confidence 55443
No 199
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.65 E-value=0.00012 Score=72.77 Aligned_cols=65 Identities=8% Similarity=-0.120 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCC
Q 040394 600 VSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRG 664 (691)
Q Consensus 600 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 664 (691)
...|..+..++.+.|++++|+..++++++.+|+++..+..++.+|...|++++|.+.+++.++..
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 46788899999999999999999999999999999999999999999999999999999998753
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.63 E-value=0.00019 Score=56.97 Aligned_cols=67 Identities=6% Similarity=-0.070 Sum_probs=62.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCCC
Q 040394 599 DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRGL 665 (691)
Q Consensus 599 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 665 (691)
+...|..+...+...|++++|...++++++..|+++..+..++.++...|++++|++.+++.++...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 4567888889999999999999999999999999999999999999999999999999999988643
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.61 E-value=0.00027 Score=58.88 Aligned_cols=112 Identities=4% Similarity=-0.123 Sum_probs=71.4
Q ss_pred CCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 040394 546 GMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENMPIEPDVSLFGAFLHGCGL----YSRFDLGEV 621 (691)
Q Consensus 546 g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~ 621 (691)
+++++|.+.|++..+. + .|+ .. |...|...+..++|+++|++.-..-+...+..|...|.. .+|+++|..
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMF--GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 3455666666655222 2 111 22 555555555666666666665222455666666666666 677888888
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHh----CCCcHHHHHHHHHHHhCCC
Q 040394 622 MIKKMLELHPDKACYYVLVSNLYAS----DGRWIRVNQVRELMKQRGL 665 (691)
Q Consensus 622 ~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~ 665 (691)
.++++.+. .++.....|+.+|.. .+++++|.+++++..+.|.
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 88877765 456777778888877 7788888888888777765
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.57 E-value=5.2e-05 Score=63.47 Aligned_cols=86 Identities=16% Similarity=0.052 Sum_probs=63.6
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhC
Q 040394 580 RAGRLEEALEFMENM-PIEP-DVSLFGAFLHGCGLYSR----------FDLGEVMIKKMLELHPDKACYYVLVSNLYASD 647 (691)
Q Consensus 580 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 647 (691)
+.+.+++|++.+++. ...| +...|..+..++...++ +++|+..|+++++++|++...|+.++.+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 334555555555555 2222 44455555555555443 67999999999999999999999999999987
Q ss_pred C-----------CcHHHHHHHHHHHhCCC
Q 040394 648 G-----------RWIRVNQVRELMKQRGL 665 (691)
Q Consensus 648 g-----------~~~~A~~~~~~~~~~g~ 665 (691)
| ++++|++.|++.++...
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 5 89999999999988543
No 203
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.51 E-value=1.2e-05 Score=78.64 Aligned_cols=438 Identities=13% Similarity=0.084 Sum_probs=263.8
Q ss_pred HHhhccCchhHHHHHHHHHHhCCCCch-hhhHHHHHHhcCCChHHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHH
Q 040394 55 LLGLCKSTGSLKAFHALLIVDGLTNDK-CNTKLVSMYGSFGHVKYARSVFDSMPNPDFYSFQVMIRWYFLNDLYKDIVEF 133 (691)
Q Consensus 55 ll~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 133 (691)
|+...++++.|..+.+. .+.+ +|..|..++.+.|++.+|...|-+. .|...|..++.+..+.|.+++-+..
T Consensus 34 L~e~i~~ldRa~eyA~~------~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~y 105 (624)
T 3lvg_A 34 LIEHIGNLDRAYEFAER------CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKY 105 (624)
T ss_dssp CCGGGCCSTTTTTSSSS------CCCCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHH
T ss_pred HHHhccccHHHHHHHHH------hCCccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHH
Confidence 34444555555444331 3444 9999999999999999998877544 4666789999999999999999999
Q ss_pred HHHHHHcCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhccC------
Q 040394 134 YKCMRKRLKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDETL------ 207 (691)
Q Consensus 134 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------ 207 (691)
+.-.++.. -++..=+.++-+|++.+++.+-++.+. .|+..-...+.+-|...|.++.|.-+|..+.
T Consensus 106 L~MaRk~~--ke~~IDteLi~ayAk~~rL~elEefl~------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLA 177 (624)
T 3lvg_A 106 LQMARKKA--RESYVETELIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLA 177 (624)
T ss_dssp HHTTSTTC--CSTTTTHHHHHHHHTSCSSSTTTSTTS------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTS
T ss_pred HHHHHHHh--cccccHHHHHHHHHhhCcHHHHHHHHc------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHH
Confidence 88666653 344455688899999998876555432 2455555667788888888888888887652
Q ss_pred ------------------CCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHH
Q 040394 208 ------------------DKNVVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRALHQGKWLH 269 (691)
Q Consensus 208 ------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~ 269 (691)
..++.+|..+-.+|...+.+.-|.-.--.+.-. || ....++.-|-..|.+++...++
T Consensus 178 stLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLl 252 (624)
T 3lvg_A 178 STLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITML 252 (624)
T ss_dssp SSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTH
T ss_pred HHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHH
Confidence 147789999999999999988776654444321 22 2334566677888888888877
Q ss_pred HHHHHHCC-CCchHHHHHHHHHHHhcCCHHHHHHHHHhc----CCC-------ChhHHHHHHHHHHhcCCchhHHHHHHH
Q 040394 270 GYILKIGI-EINSHLVTALLDMYVKCGNIRDARSVFDEL----CSI-------DLVSWTAMIVGYTQSGYPDKALKLFTD 337 (691)
Q Consensus 270 ~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~-------~~~~~~~li~~~~~~g~~~~a~~~~~~ 337 (691)
+.-. |. .....+++-|.-.|+|- +.++..+-++.. .-| ....|.-++-.|....++|.|...
T Consensus 253 Eagl--glErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt--- 326 (624)
T 3lvg_A 253 EAAL--GLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT--- 326 (624)
T ss_dssp HHHT--TSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---
T ss_pred HHHh--CCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---
Confidence 7655 33 34667888888888775 455555555443 112 344688899889988888877543
Q ss_pred hhHC-----------C---CCCcHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHH
Q 040394 338 KKWA-----------D---FFPNHVTIASVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYI 403 (691)
Q Consensus 338 m~~~-----------g---~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 403 (691)
|.+. . -.++...|-..|..|....-.- -..++..+ ...+ |. +..++.+.+.|++.-....
T Consensus 327 Mi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~P~l-L~DLL~vL-~prl-Dh---~RvV~~~~k~~~LpLIkpY 400 (624)
T 3lvg_A 327 MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLL-LNDLLMVL-SPRL-DH---TRAVNYFSKVKQLPLVKPY 400 (624)
T ss_dssp TTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSCCTT-SHHHHHHH-CTTC-CS---TTTHHHHHTTTCGGGGTGG
T ss_pred HHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHHhChHH-HHHHHHhc-cccC-Ch---HHHHHHHHhcCCchhhHHH
Confidence 2211 0 1234455555555544332211 00111100 0000 11 1233444445555544444
Q ss_pred HHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHH------------HHHHHHHHcCCCCCchhHHHH
Q 040394 404 FETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGS------------SLHAYSTKQGLLSSNVYVGTA 471 (691)
Q Consensus 404 ~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~------------~~~~~~~~~~~~~~~~~~~~~ 471 (691)
+......+....| .++-..+....|++.-. .+-+++.++ +-...-..
T Consensus 401 L~~Vq~~N~~aVN-----------------eAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkH----eL~eFRrI 459 (624)
T 3lvg_A 401 LRSVQNHNNKSVN-----------------ESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKH----ELIEFRRI 459 (624)
T ss_dssp GTSCCCSCCHHHH-----------------HHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTC----SSHHHHHH
T ss_pred HHHHHHhhHHHHH-----------------HHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhC----chHHHHHH
Confidence 4444443322111 12222233333332211 122222322 22334444
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHH
Q 040394 472 LLNFYAKCGDAQSARMVFDAMREKNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEG 551 (691)
Q Consensus 472 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A 551 (691)
-...|.+.++|+++..+..+= ..|.-.|......|+.+-|.++++-..+.| +...|...+-.|...=++|-+
T Consensus 460 AA~LYkkn~rw~qsi~l~KkD-----klykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvV 531 (624)
T 3lvg_A 460 AAYLFKGNNRWKQSVELCKKD-----SLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVV 531 (624)
T ss_dssp HHHHHHTTCHHHHHSSCSSTT-----CCTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHH
T ss_pred HHHHHHhcccHHHHHHHHHhc-----ccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHH
Confidence 456677778888776654322 233334556677888888888888888765 445677777777776677777
Q ss_pred HHH
Q 040394 552 WKC 554 (691)
Q Consensus 552 ~~~ 554 (691)
+++
T Consensus 532 lEl 534 (624)
T 3lvg_A 532 LET 534 (624)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.45 E-value=0.00043 Score=52.43 Aligned_cols=65 Identities=15% Similarity=0.136 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCC
Q 040394 600 VSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRG 664 (691)
Q Consensus 600 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 664 (691)
...+..+...+...|++++|...++++++..|+++..+..++.++...|++++|.+.+++..+..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45778888889999999999999999999999999999999999999999999999999998753
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.35 E-value=9.9e-05 Score=61.81 Aligned_cols=92 Identities=14% Similarity=0.186 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCC----------hHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh
Q 040394 546 GMVGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGR----------LEEALEFMENM-PIEPD-VSLFGAFLHGCGL 612 (691)
Q Consensus 546 g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~----------~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~ 612 (691)
+.+++|.+.++...+ +.|+ ...|..+..++...++ +++|+..|++. .+.|+ ..+|..+..+|..
T Consensus 16 ~~feeA~~~~~~Ai~---l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 16 LLFEQIRQDAENTYK---SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 345566666664432 3443 5555556666665554 34777777776 44553 4577777777766
Q ss_pred c-----------CCHHHHHHHHHHHHhcCCCCchhHHHH
Q 040394 613 Y-----------SRFDLGEVMIKKMLELHPDKACYYVLV 640 (691)
Q Consensus 613 ~-----------g~~~~A~~~~~~~~~~~p~~~~~~~~l 640 (691)
. |++++|+..|+++++++|++..+...+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al 131 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL 131 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 5 589999999999999999987665544
No 206
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.26 E-value=0.00048 Score=70.72 Aligned_cols=86 Identities=9% Similarity=0.023 Sum_probs=71.4
Q ss_pred HHHhcCChHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCc---hhHH
Q 040394 577 LLARAGRLEEALEFMENM---------PIEPDV-SLFGAFLHGCGLYSRFDLGEVMIKKMLE-----LHPDKA---CYYV 638 (691)
Q Consensus 577 ~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~---~~~~ 638 (691)
.+...|++++|+.++++. ...|+. .+++.|...|...|++++|+.+++++++ +.|+++ ..+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999888776 133433 4889999999999999999999999987 455554 5678
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHh
Q 040394 639 LVSNLYASDGRWIRVNQVRELMKQ 662 (691)
Q Consensus 639 ~l~~~~~~~g~~~~A~~~~~~~~~ 662 (691)
.|+.+|..+|++++|..++++.++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 899999999999999999998875
No 207
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.22 E-value=0.00045 Score=69.65 Aligned_cols=95 Identities=15% Similarity=0.042 Sum_probs=54.3
Q ss_pred ccCCHHHHHHHHHHchhhcC--CCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCCH-HHHHHHH
Q 040394 544 HTGMVGEGWKCFYSMCRDFK--FVPS----MKHYVCMVDLLARAGRLEEALEFMENM---------PIEPDV-SLFGAFL 607 (691)
Q Consensus 544 ~~g~~~~A~~~~~~m~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~l~ 607 (691)
..|++++|+.++++...... +.|+ ..+++.|..+|...|++++|+.++++. +..|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 34677777777765533211 2222 345666666666666666666666555 123333 3566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHh-----cCCCCchhHH
Q 040394 608 HGCGLYSRFDLGEVMIKKMLE-----LHPDKACYYV 638 (691)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~ 638 (691)
..|...|++++|+.+++++++ +.|+++.+-.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 666666666666666666666 3566554443
No 208
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.15 E-value=0.0015 Score=52.10 Aligned_cols=79 Identities=9% Similarity=-0.074 Sum_probs=57.9
Q ss_pred HHHHHHHchhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040394 551 GWKCFYSMCRDFKFVPS-MKHYVCMVDLLARAGRLEEALEFMENM-PIEP-DVSLFGAFLHGCGLYSRFDLGEVMIKKML 627 (691)
Q Consensus 551 A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (691)
|++.+++.. ...|+ ...+..+...|...|++++|++.+++. ...| +...|..+..++...|++++|...+++++
T Consensus 4 a~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAML---AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHH---TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455555443 34454 567777778888888888888888776 3333 45678888888888999999999999988
Q ss_pred hcCCC
Q 040394 628 ELHPD 632 (691)
Q Consensus 628 ~~~p~ 632 (691)
+..|+
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 87775
No 209
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.15 E-value=0.0083 Score=63.17 Aligned_cols=149 Identities=12% Similarity=0.027 Sum_probs=116.2
Q ss_pred CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCC----------HHHHHHHHHHchhhcCCCCC-hhHHHHHHHHH
Q 040394 511 GDGGGSLALFSDMLNEEVQPNEV-IFTTILSACSHTGM----------VGEGWKCFYSMCRDFKFVPS-MKHYVCMVDLL 578 (691)
Q Consensus 511 ~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~----------~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~ 578 (691)
...++|++.++++... .|+.. .|+.--.++...|+ ++++++.++.+.+. .|+ ..+|..-..++
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRCWLL 117 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHH
Confidence 3446789999999884 56553 44444344444555 89999999988654 454 67788878888
Q ss_pred HhcC--ChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhC------
Q 040394 579 ARAG--RLEEALEFMENM-P-IEPDVSLFGAFLHGCGLYS-RFDLGEVMIKKMLELHPDKACYYVLVSNLYASD------ 647 (691)
Q Consensus 579 ~~~g--~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~------ 647 (691)
.+.| +++++++.++++ . .+-+...|+.-...+.+.| .++++.+.++++++.+|++..+|...+.++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 8889 779999999999 3 3447789988888888888 899999999999999999999999999988774
Q ss_pred --------CCcHHHHHHHHHHHhCC
Q 040394 648 --------GRWIRVNQVRELMKQRG 664 (691)
Q Consensus 648 --------g~~~~A~~~~~~~~~~g 664 (691)
+.++++.+.+++..+..
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~ 222 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTD 222 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHC
T ss_pred cccccccHHHHHHHHHHHHHHHhhC
Confidence 55788888887777643
No 210
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.13 E-value=0.033 Score=43.98 Aligned_cols=140 Identities=9% Similarity=-0.014 Sum_probs=100.7
Q ss_pred hcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHH
Q 040394 508 GMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEA 587 (691)
Q Consensus 508 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 587 (691)
.-.|..++..++..+... +.+..-||.+|--....-+-+-..++++.+ |--.| ...+|+....
T Consensus 18 ildG~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~I----GkiFD----------is~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKI----GSYFD----------LDKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHH----GGGSC----------GGGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHH----hhhcC----------cHhhhcHHHH
Confidence 346778888888887776 334455555554444444445555555555 22223 2356777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCCCc
Q 040394 588 LEFMENMPIEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRGLS 666 (691)
Q Consensus 588 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 666 (691)
...+-.++ .+....+..+..+..+|.-++-.+++..++...|.++.....++.+|.+.|+..+|.+++.+.-+.|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 77777775 244556677888899999999999999977777666999999999999999999999999999999985
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.11 E-value=0.0022 Score=64.67 Aligned_cols=81 Identities=10% Similarity=0.014 Sum_probs=51.2
Q ss_pred CChHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCc---hhHHHHHHH
Q 040394 582 GRLEEALEFMENM---------PIEPDV-SLFGAFLHGCGLYSRFDLGEVMIKKMLE-----LHPDKA---CYYVLVSNL 643 (691)
Q Consensus 582 g~~~~A~~~~~~~---------~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~---~~~~~l~~~ 643 (691)
|++++|+.++++. ...|+. .+++.|..+|...|++++|+.+++++++ +.|+++ ..+..|+.+
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4555555555443 122332 4667777777777777777777777775 334443 456677777
Q ss_pred HHhCCCcHHHHHHHHHHHh
Q 040394 644 YASDGRWIRVNQVRELMKQ 662 (691)
Q Consensus 644 ~~~~g~~~~A~~~~~~~~~ 662 (691)
|..+|++++|..++++.++
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 7777777777777776654
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.10 E-value=0.0012 Score=50.93 Aligned_cols=79 Identities=15% Similarity=0.187 Sum_probs=59.8
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCc
Q 040394 574 MVDLLARAGRLEEALEFMENM-PIEP-DVS-LFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRW 650 (691)
Q Consensus 574 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 650 (691)
....+.+.|++++|++.+++. ...| +.. .+..+..++...|++++|...++++++.+|+++..+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 456778889999999999887 3344 456 78888888889999999999999999999998776632 344
Q ss_pred HHHHHHHHHH
Q 040394 651 IRVNQVRELM 660 (691)
Q Consensus 651 ~~A~~~~~~~ 660 (691)
.++...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 5555555433
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.09 E-value=0.00076 Score=52.12 Aligned_cols=57 Identities=14% Similarity=0.163 Sum_probs=35.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCch-hHHHHHHHHHhCCCcHHHHHHHHHHHhC
Q 040394 607 LHGCGLYSRFDLGEVMIKKMLELHPDKAC-YYVLVSNLYASDGRWIRVNQVRELMKQR 663 (691)
Q Consensus 607 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 663 (691)
...+...|++++|...++++++..|+++. .+..++.+|...|++++|.+.+++.++.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34455566666666666666666666665 6666666666666666666666666554
No 214
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.07 E-value=0.0087 Score=49.54 Aligned_cols=112 Identities=8% Similarity=-0.073 Sum_probs=87.6
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHh----cCChHH
Q 040394 511 GDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLAR----AGRLEE 586 (691)
Q Consensus 511 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 586 (691)
+++++|++.|++..+.| .|+.. +-..|...+.+++|.+.|++..+. -+...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788999999998887 44444 555677777888899999877432 356777788888887 789999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC
Q 040394 587 ALEFMENMPIEPDVSLFGAFLHGCGL----YSRFDLGEVMIKKMLELHP 631 (691)
Q Consensus 587 A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p 631 (691)
|.++|++.-..-+...+..|...|.. .+|.++|...++++.+...
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999998333567788888888888 8999999999999888744
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.06 E-value=0.001 Score=67.22 Aligned_cols=103 Identities=12% Similarity=-0.017 Sum_probs=74.1
Q ss_pred HHHhcccCCHHHHHHHHHHchhhcC--CCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCCH-HH
Q 040394 539 LSACSHTGMVGEGWKCFYSMCRDFK--FVPS----MKHYVCMVDLLARAGRLEEALEFMENM---------PIEPDV-SL 602 (691)
Q Consensus 539 l~~~~~~g~~~~A~~~~~~m~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~ 602 (691)
+..+...|++++|+.++++...... +.|+ ..+++.|..+|...|++++|+.++++. +..|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 5566677888888888887643321 2233 456778888888888888888887766 233443 46
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCchhHHHHH
Q 040394 603 FGAFLHGCGLYSRFDLGEVMIKKMLE-----LHPDKACYYVLVS 641 (691)
Q Consensus 603 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~~l~ 641 (691)
++.|...|...|++++|+.+++++++ ..|+++.+-..+.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~ 417 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLIL 417 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 78888888888888888888888888 5788776666553
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.05 E-value=0.0043 Score=62.65 Aligned_cols=87 Identities=10% Similarity=0.125 Sum_probs=56.1
Q ss_pred HHHHhcCChHHHHHHHHhC------CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCc---hhH
Q 040394 576 DLLARAGRLEEALEFMENM------PIEPD----VSLFGAFLHGCGLYSRFDLGEVMIKKMLE-----LHPDKA---CYY 637 (691)
Q Consensus 576 ~~~~~~g~~~~A~~~~~~~------~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~---~~~ 637 (691)
..+.+.|++++|++++++. -..|+ ..+++.|...|...|++++|+.+++++++ ..|+++ ..+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3345667777777776655 01122 23667777777777777777777777775 334443 456
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHh
Q 040394 638 VLVSNLYASDGRWIRVNQVRELMKQ 662 (691)
Q Consensus 638 ~~l~~~~~~~g~~~~A~~~~~~~~~ 662 (691)
..|+.+|..+|++++|..++++.++
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 6777777777777777777776654
No 217
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.91 E-value=0.003 Score=58.21 Aligned_cols=88 Identities=5% Similarity=0.032 Sum_probs=70.8
Q ss_pred hHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHhC-CCcHH
Q 040394 584 LEEALEFMENM-PIEPD---VSLFGAFLHGCGL-----YSRFDLGEVMIKKMLELHPDK-ACYYVLVSNLYASD-GRWIR 652 (691)
Q Consensus 584 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 652 (691)
...|...+++. ...|+ ...|..|...|.+ .|+.++|.++|+++++++|+. ...++..+..++.. |++++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34556666665 56666 4578888888877 599999999999999999975 88999999988884 99999
Q ss_pred HHHHHHHHHhCCCccCCCe
Q 040394 653 VNQVRELMKQRGLSKSPGC 671 (691)
Q Consensus 653 A~~~~~~~~~~g~~~~~~~ 671 (691)
|.+.+++.+.......|+.
T Consensus 259 a~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHHcCCCCCCCCh
Confidence 9999999999877765664
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.84 E-value=0.022 Score=54.97 Aligned_cols=68 Identities=9% Similarity=-0.032 Sum_probs=45.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 040394 567 SMKHYVCMVDLLARAGRLEEALEFMENM-PIEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKA 634 (691)
Q Consensus 567 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 634 (691)
+...|..+...+...|++++|...++++ ...|+...|..+...+.-.|++++|.+.+++++.++|..+
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 3556666655566667777777777776 3346666666666666677777777777777777777643
No 219
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.64 E-value=0.016 Score=55.95 Aligned_cols=69 Identities=12% Similarity=0.028 Sum_probs=60.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCCC
Q 040394 596 IEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRGL 665 (691)
Q Consensus 596 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 665 (691)
.+.+..++..+...+...|++++|...++++++++|+ ...|..++.++.-.|++++|.+.+++....+.
T Consensus 273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 3557778888887788889999999999999999986 77888999999999999999999999988654
No 220
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.56 E-value=0.016 Score=44.55 Aligned_cols=63 Identities=11% Similarity=0.010 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 040394 429 DAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMR 493 (691)
Q Consensus 429 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 493 (691)
+...+..+...+...|++++|...|+...+.. |.+...+..+..+|...|++++|...|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45566677777777777888877777777776 5666677777777777777777777777654
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.54 E-value=0.0065 Score=50.19 Aligned_cols=93 Identities=13% Similarity=0.037 Sum_probs=69.4
Q ss_pred CCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHH
Q 040394 546 GMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAG---RLEEALEFMENM-PIE-P--DVSLFGAFLHGCGLYSRFDL 618 (691)
Q Consensus 546 g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~ 618 (691)
+....+.+.|.+.... + .++..+.-.+..++++.+ +.++++.+++.. ... | +...+-.|.-++.+.|++++
T Consensus 12 ~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 4566677777765332 2 367777778888999988 666899888887 323 5 34566667778899999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHH
Q 040394 619 GEVMIKKMLELHPDKACYYVLV 640 (691)
Q Consensus 619 A~~~~~~~~~~~p~~~~~~~~l 640 (691)
|.+.++.+++.+|++.......
T Consensus 90 A~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999987666544
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.53 E-value=0.12 Score=57.53 Aligned_cols=153 Identities=12% Similarity=0.132 Sum_probs=96.1
Q ss_pred HHHhCCChhHHHH-HHHHHHHcCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHH
Q 040394 120 WYFLNDLYKDIVE-FYKCMRKRLKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGS 198 (691)
Q Consensus 120 ~~~~~~~~~~a~~-~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 198 (691)
.....+++++|.+ ++..+ |+......++..+.+.|..+.|.++.+.-. .-.......|++++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~-----------~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD-----------QKFELALKVGQLTL 670 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH-----------HHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc-----------hheehhhhcCCHHH
Confidence 3345677777765 44211 101223566666777777777776553211 11344567899999
Q ss_pred HHHHHhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCC
Q 040394 199 SRQVFDETLDKNVVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIGIE 278 (691)
Q Consensus 199 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~ 278 (691)
|.++.+.+. +...|..|...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++-+.....|.
T Consensus 671 A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~- 738 (814)
T 3mkq_A 671 ARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK- 738 (814)
T ss_dssp HHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc-
Confidence 999988774 457899999999999999999999998853 34455555556766665555555444432
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHh
Q 040394 279 INSHLVTALLDMYVKCGNIRDARSVFDE 306 (691)
Q Consensus 279 ~~~~~~~~li~~~~~~g~~~~A~~~~~~ 306 (691)
++.-..+|.+.|++++|.+++.+
T Consensus 739 -----~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 739 -----FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp -----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred -----hHHHHHHHHHcCCHHHHHHHHHH
Confidence 23333445566777777665544
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.51 E-value=0.017 Score=44.93 Aligned_cols=74 Identities=15% Similarity=0.103 Sum_probs=56.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHH
Q 040394 568 MKHYVCMVDLLARAGRLEEALEFMENM-----P----IEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYV 638 (691)
Q Consensus 568 ~~~~~~li~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 638 (691)
...+-.|...+.+.|+++.|...++.. + ..+...++..|..++.+.|+++.|...+++++++.|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 334556777777888888887777765 1 1234568889999999999999999999999999999877755
Q ss_pred HHH
Q 040394 639 LVS 641 (691)
Q Consensus 639 ~l~ 641 (691)
.+.
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 553
No 224
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.49 E-value=0.00035 Score=68.61 Aligned_cols=119 Identities=12% Similarity=0.051 Sum_probs=86.7
Q ss_pred CChhHHHHHHHHhHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 040394 178 PDSFVLTGLVDMYAKCRDIGSSRQVFDETLDKNVVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACA 257 (691)
Q Consensus 178 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~ 257 (691)
..+.+|..|..+..+.+++.+|++-|-+ ..|+..|..+|....+.|.+++-...+...++..-.| ..=+.++-+|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayA 127 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALA 127 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHH
Confidence 3677888888888888888887655533 3466778888888888999988888877766553333 34457888888
Q ss_pred ccCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 040394 258 KLRALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNIRDARSVFDEL 307 (691)
Q Consensus 258 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 307 (691)
+.+++.+.++.+ -.||..-...+.+-|...|.++.|.-+|..+
T Consensus 128 k~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~i 170 (624)
T 3lvg_A 128 KTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 170 (624)
T ss_dssp TSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGS
T ss_pred hhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhC
Confidence 888877654443 2466666677778888888888888877766
No 225
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.16 E-value=2 Score=46.98 Aligned_cols=260 Identities=11% Similarity=0.020 Sum_probs=131.5
Q ss_pred HHHccCChhhHHHHHHHHHHHC--CCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC----------hhHHHHHHHH
Q 040394 255 ACAKLRALHQGKWLHGYILKIG--IEINSHLVTALLDMYVKCGNIRDARSVFDELC-SID----------LVSWTAMIVG 321 (691)
Q Consensus 255 ~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~----------~~~~~~li~~ 321 (691)
+....|+.+++..+++..+..+ -.+....-..+.-+...+|.-+++..++.... ..+ +..-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4556778887777776654421 11222333344445556666556666665541 112 1112233333
Q ss_pred HHhcCCc-hhHHHHHHHhhHCCCCCcHHHHH--HHHHHHhcCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChH
Q 040394 322 YTQSGYP-DKALKLFTDKKWADFFPNHVTIA--SVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIA 398 (691)
Q Consensus 322 ~~~~g~~-~~a~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 398 (691)
++-.|.- +++.+.+..+....- +...... .+--.+...|+.+....++..+.+....+..-...+.-++...|+.+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 4334432 456666666554321 1111122 22223456677776677766665432223333333333344567777
Q ss_pred HHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHH--HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHH
Q 040394 399 DARYIFETTSEKDVIAWNSIISGLDDNVSPDAVT--LVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFY 476 (691)
Q Consensus 399 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 476 (691)
.+..+++.+... ..|.... ...+.-+|+..|+.....+++..+.... ..+......+.-++
T Consensus 542 ~~~~li~~L~~~---------------~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~--~d~VRraAViaLGl 604 (963)
T 4ady_A 542 LADDLITKMLAS---------------DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS--NDDVRRAAVIALGF 604 (963)
T ss_dssp GGHHHHHHHHHC---------------SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---------------CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC--cHHHHHHHHHHHHh
Confidence 666666655432 1121111 1233446778888888888888887654 33344333344444
Q ss_pred HhcCCHHHHHHHHHhccc-CCHhH--HHHHHHHHhcCCCh-HHHHHHHHHHHHCCCCCCHHHH
Q 040394 477 AKCGDAQSARMVFDAMRE-KNTVT--WSAMIGGYGMQGDG-GGSLALFSDMLNEEVQPNEVIF 535 (691)
Q Consensus 477 ~~~g~~~~A~~~~~~~~~-~~~~~--~~~li~~~~~~~~~-~~A~~~~~~m~~~g~~p~~~~~ 535 (691)
...|+.+.+.++++.+.+ .|... -.++..+....|.. .+++.++..+.. .+|..+-
T Consensus 605 I~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vr 664 (963)
T 4ady_A 605 VLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVR 664 (963)
T ss_dssp HTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHH
T ss_pred hccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHH
Confidence 456666666777765543 23333 23344444444444 567888888875 4555443
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.93 E-value=0.033 Score=45.99 Aligned_cols=67 Identities=9% Similarity=-0.036 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-C-CCchhHHHHHHHHHhCCCcHHHHHHHHHHHhC
Q 040394 597 EPDVSLFGAFLHGCGLYS---RFDLGEVMIKKMLELH-P-DKACYYVLVSNLYASDGRWIRVNQVRELMKQR 663 (691)
Q Consensus 597 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 663 (691)
.++..+.-.+.+++.+++ +.++++.++++..+.+ | ++..+++.|+-.|.+.|++++|.++++.+++.
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 456666667777777766 5667777777777766 6 44667777777777777777777777777764
No 227
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.92 E-value=2.1 Score=45.03 Aligned_cols=114 Identities=11% Similarity=-0.018 Sum_probs=70.4
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHH----HHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHH
Q 040394 511 GDGGGSLALFSDMLNEEVQPNEVI----FTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEE 586 (691)
Q Consensus 511 ~~~~~A~~~~~~m~~~g~~p~~~~----~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 586 (691)
.+.+.|...+....+.+ ..+... ...+.......+...++...+..... ..++.......+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHH
Confidence 37788999998887543 223322 22333344555534556666665422 22333334445555567899999
Q ss_pred HHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040394 587 ALEFMENMPIEP--DVSLFGAFLHGCGLYSRFDLGEVMIKKMLE 628 (691)
Q Consensus 587 A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (691)
|...|+.|...+ ...-.--+.+++...|+.++|..+|+++.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999995432 233333456677788999999999999875
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.86 E-value=0.037 Score=42.88 Aligned_cols=65 Identities=9% Similarity=-0.053 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhC
Q 040394 599 DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELH-------PDKACYYVLVSNLYASDGRWIRVNQVRELMKQR 663 (691)
Q Consensus 599 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 663 (691)
+...+..+...+...|+++.|...++++++.. +..+.++..|+.+|.+.|++++|..+++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 45566788899999999999999999999842 344678899999999999999999999999874
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.85 E-value=0.027 Score=45.67 Aligned_cols=54 Identities=13% Similarity=0.018 Sum_probs=36.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCCCc
Q 040394 613 YSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRGLS 666 (691)
Q Consensus 613 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 666 (691)
.+|.++|.++|+.+++.+..-+.+|...+..-.++|+.+.|.+++.+.+..+..
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 367777777777776665555566666666677777777777777776665543
No 230
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.83 E-value=0.073 Score=40.11 Aligned_cols=69 Identities=12% Similarity=0.100 Sum_probs=52.9
Q ss_pred CChhHHHHHHHHHHhcCC---hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 040394 566 PSMKHYVCMVDLLARAGR---LEEALEFMENM-PIEP-DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKA 634 (691)
Q Consensus 566 p~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 634 (691)
.+...+..+..++...++ .++|..++++. ...| +......+...+.+.|++++|+..|+++++..|+++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 346667777777765544 68888888887 4444 456777788888999999999999999999988843
No 231
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.52 E-value=0.098 Score=58.21 Aligned_cols=153 Identities=10% Similarity=0.007 Sum_probs=88.2
Q ss_pred HHhccCcHHHHHH-HHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHhHHHHHHHHHhcCCChHHHH
Q 040394 439 ACASLGAVQVGSS-LHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMREKNTVTWSAMIGGYGMQGDGGGSL 517 (691)
Q Consensus 439 ~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 517 (691)
.....++++.|.+ ++.. .++......++..+.+.|.+++|.++.+... .-.......|+++.|.
T Consensus 608 ~~~~~~~~~~a~~~~l~~-------i~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~--------~~f~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN-------VEGKDSLTKIARFLEGQEYYEEALNISPDQD--------QKFELALKVGQLTLAR 672 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG-------CCCHHHHHHHHHHHHHTTCHHHHHHHCCCHH--------HHHHHHHHHTCHHHHH
T ss_pred HHHHhCCHHHHHHHHHhc-------CCchHHHHHHHHHHHhCCChHHheecCCCcc--------hheehhhhcCCHHHHH
Confidence 3345677777765 4421 1212233677778888888888876653211 1123345678888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 040394 518 ALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENMPIE 597 (691)
Q Consensus 518 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 597 (691)
++.+. ..+...|..+...+.+.++++.|.+.|..+ ++ |..+...+...|+.+...++-+.....
T Consensus 673 ~~~~~------~~~~~~W~~la~~al~~~~~~~A~~~y~~~-~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 673 DLLTD------ESAEMKWRALGDASLQRFNFKLAIEAFTNA-HD---------LESLFLLHSSFNNKEGLVTLAKDAETT 736 (814)
T ss_dssp HHHTT------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-TC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHh------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc-cC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence 87543 346678888888888889999998888876 32 334444455555555444333322111
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040394 598 PDVSLFGAFLHGCGLYSRFDLGEVMIKK 625 (691)
Q Consensus 598 p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 625 (691)
.+ ++....++.+.|++++|++++.+
T Consensus 737 ~~---~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 737 GK---FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp TC---HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred Cc---hHHHHHHHHHcCCHHHHHHHHHH
Confidence 11 12233334455666666665554
No 232
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.38 E-value=4.1 Score=44.66 Aligned_cols=269 Identities=10% Similarity=-0.005 Sum_probs=140.0
Q ss_pred HHHHhcCCchhHHHHHHHhhHCCCCCcHHHHHH--HHHHHhcCCChhhHHHHHHHHHHhCC--------CchhHHHHHHH
Q 040394 320 VGYTQSGYPDKALKLFTDKKWADFFPNHVTIAS--VLSASAQLGNLNMGRMVHSLGIRLGL--------EDYTVINALVD 389 (691)
Q Consensus 320 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~--ll~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~l~~ 389 (691)
-+....|+.++++.++......+-..+..+-.. +.-+....|..+++..++........ +....-.++.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 356677888888888877654321223332222 22245555555566666655554332 11122223333
Q ss_pred Hh--HhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchh
Q 040394 390 MY--AKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVY 467 (691)
Q Consensus 390 ~~--~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 467 (691)
++ .-.++ +++.+.+..+...+. -......-.++...+...|+.+....+++.+.+.. ..+..
T Consensus 462 Gla~~GS~~-eev~e~L~~~L~dd~-------------~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~--~e~vr 525 (963)
T 4ady_A 462 GLAAMGSAN-IEVYEALKEVLYNDS-------------ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ--HGNIT 525 (963)
T ss_dssp HHHSTTCCC-HHHHHHHHHHHHTCC-------------HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS--CHHHH
T ss_pred HHHhcCCCC-HHHHHHHHHHHhcCC-------------HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC--cHHHH
Confidence 33 33333 344444444332210 00001112233344557788888888888777643 22222
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccc-CCHh-HHH---HHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 040394 468 VGTALLNFYAKCGDAQSARMVFDAMRE-KNTV-TWS---AMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSAC 542 (691)
Q Consensus 468 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~-~~~---~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 542 (691)
-...+.-++.-.|+.+.+..+.+.+.. .+.. -|. ++..+|+-.|+.....++++.+.+. ...+......+--++
T Consensus 526 R~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGl 604 (963)
T 4ady_A 526 RGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGF 604 (963)
T ss_dssp HHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHh
Confidence 233333344467888888888777764 3333 333 3456778889987777799888874 122222222222244
Q ss_pred cccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCCh-HHHHHHHHhCCCCCCHHHHHHHH
Q 040394 543 SHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRL-EEALEFMENMPIEPDVSLFGAFL 607 (691)
Q Consensus 543 ~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~p~~~~~~~l~ 607 (691)
...|+.+.+.++++.+.+. ..|.+..-..+.-+....|.. .+|++.+..+...+|..+-...+
T Consensus 605 I~~g~~e~v~rlv~~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai 668 (963)
T 4ady_A 605 VLLRDYTTVPRIVQLLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAM 668 (963)
T ss_dssp HTSSSCSSHHHHTTTGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHH
Confidence 4566666667777655332 245544444455555555554 67888888885556655443333
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.75 E-value=1.7 Score=36.84 Aligned_cols=129 Identities=10% Similarity=0.114 Sum_probs=76.7
Q ss_pred HHhHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHH
Q 040394 188 DMYAKCRDIGSSRQVFDETLDKNVVSWTSMIAGYVQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRALHQGKW 267 (691)
Q Consensus 188 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~ 267 (691)
......|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+....
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445677888887777765 4566788888888888888888888887643 3444445555666666555
Q ss_pred HHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHHHHh
Q 040394 268 LHGYILKIGIEINSHLVTALLDMYVKCGNIRDARSVFDELCSIDLVSWTAMIVGYTQSGYPDKALKLFTDK 338 (691)
Q Consensus 268 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 338 (691)
+-+.....|- ++.-...+.-.|+++++.++|.+....+... ......|..+.|.++.+++
T Consensus 82 la~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~-----~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGSLPLAY-----AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH-----HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCChHHHH-----HHHHHcCcHHHHHHHHHHh
Confidence 5444444442 2333444556678888877776653321111 1112245555666665554
No 234
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.74 E-value=0.77 Score=38.92 Aligned_cols=129 Identities=12% Similarity=0.075 Sum_probs=67.2
Q ss_pred HHHHhcCCHHHHHHHHHhcccCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHH
Q 040394 474 NFYAKCGDAQSARMVFDAMREKNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWK 553 (691)
Q Consensus 474 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~ 553 (691)
+.....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|.-.|+.+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3345667777777776655 3566777777777777777777777766543 2223333344455544433
Q ss_pred HHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040394 554 CFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENMPIEPDVSLFGAFLHGCGLYSRFDLGEVMIKKM 626 (691)
Q Consensus 554 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 626 (691)
+-+.. ... .-++.-...+.-.|+++++.+++.+.+.-|....+ ....|-.+.|.++.+++
T Consensus 82 la~iA-~~~------g~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~~------A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIA-QTR------EDFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAV------AKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHH-HHT------TCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHH------HHHTTCHHHHHHHHHHT
T ss_pred HHHHH-HHC------ccHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHH------HHHcCcHHHHHHHHHHh
Confidence 32222 110 12334444555667777777776666432221111 11245555555555543
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.37 E-value=0.11 Score=41.22 Aligned_cols=94 Identities=13% Similarity=0.016 Sum_probs=63.9
Q ss_pred cCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHH
Q 040394 545 TGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEE---ALEFMENM-PIE-P--DVSLFGAFLHGCGLYSRFD 617 (691)
Q Consensus 545 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~ 617 (691)
...+..+.+-|.+.... +. |+..+--.+..++.+..+..+ ++.+++.. ... | .....-.|.-++.+.|+++
T Consensus 14 ~~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHH
Confidence 34455566666654332 22 666666677788888877666 78888876 322 4 2234455667788999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHH
Q 040394 618 LGEVMIKKMLELHPDKACYYVLV 640 (691)
Q Consensus 618 ~A~~~~~~~~~~~p~~~~~~~~l 640 (691)
+|...++.+++.+|+|.....+.
T Consensus 92 ~A~~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999999887666544
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.10 E-value=0.4 Score=37.94 Aligned_cols=67 Identities=10% Similarity=-0.050 Sum_probs=43.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcC-C-CCchhHHHHHHHHHhCCCcHHHHHHHHHHHhC
Q 040394 597 EPDVSLFGAFLHGCGLYSRFDL---GEVMIKKMLELH-P-DKACYYVLVSNLYASDGRWIRVNQVRELMKQR 663 (691)
Q Consensus 597 ~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 663 (691)
.|+..+--.+.+++.++.+... ++.++++..... | ..-.+.+.|+-.+.+.|+|++|.+.++.+++.
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3556665566666766655444 777777766655 4 33456666777777777777777777777663
No 237
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.89 E-value=6.3 Score=37.09 Aligned_cols=114 Identities=11% Similarity=0.116 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHH----HHHHhhHCCCCCcHHHHHHHHHHH
Q 040394 282 HLVTALLDMYVKCGNIRDARSVFDELCSIDLVSWTAMIVGYTQSGYPDKALK----LFTDKKWADFFPNHVTIASVLSAS 357 (691)
Q Consensus 282 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~----~~~~m~~~g~~p~~~t~~~ll~~~ 357 (691)
..|.++..-|.+.+++++|.+++..- ...+.+.|+...|-+ +++...+.+++++..+...++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 35566666788889999998887653 345667787766555 456666778899988888888777
Q ss_pred hcCCChh-hHHHHHHHHH----HhCC-C--chhHHHHHHHHhHhcCChHHHHHHHHh
Q 040394 358 AQLGNLN-MGRMVHSLGI----RLGL-E--DYTVINALVDMYAKCHVIADARYIFET 406 (691)
Q Consensus 358 ~~~~~~~-~a~~~~~~~~----~~~~-~--~~~~~~~l~~~~~~~g~~~~a~~~~~~ 406 (691)
..-..-+ .-.++.+.++ +.|. + ++..+..+...|.+.|++.+|...|-.
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~ 159 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML 159 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh
Confidence 6543222 2233333333 3332 2 889999999999999999999988864
No 238
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.85 E-value=1.1 Score=36.24 Aligned_cols=76 Identities=7% Similarity=0.110 Sum_probs=53.8
Q ss_pred CCChhHHHHHHHHHHhcCChH---HHHHHHHhC-CCCC-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHH
Q 040394 565 VPSMKHYVCMVDLLARAGRLE---EALEFMENM-PIEP-DV-SLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYV 638 (691)
Q Consensus 565 ~p~~~~~~~li~~~~~~g~~~---~A~~~~~~~-~~~p-~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 638 (691)
.|+..+--.+..++.+..+.+ +++.+++.. ...| +. ...-.|.-++.+.|++++|.++.+.+++.+|+|.....
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 566666666777888877554 567777776 2233 22 34455667788999999999999999999999766554
Q ss_pred HH
Q 040394 639 LV 640 (691)
Q Consensus 639 ~l 640 (691)
+.
T Consensus 116 Lk 117 (144)
T 1y8m_A 116 LK 117 (144)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 239
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.44 E-value=0.97 Score=37.61 Aligned_cols=60 Identities=7% Similarity=-0.093 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh---cC----------------------CCCchhHHHHHHHHHhCCCcHHHHHH
Q 040394 602 LFGAFLHGCGLYSRFDLGEVMIKKMLE---LH----------------------PDKACYYVLVSNLYASDGRWIRVNQV 656 (691)
Q Consensus 602 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~----------------------p~~~~~~~~l~~~~~~~g~~~~A~~~ 656 (691)
++..+..++...|++.+|...|+++++ .- +.+....+.++.||.+.|++++|+.+
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~ 144 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAI 144 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHH
Confidence 344455566666666666666666543 11 11124667899999999999999999
Q ss_pred HHHHH
Q 040394 657 RELMK 661 (691)
Q Consensus 657 ~~~~~ 661 (691)
++.+.
T Consensus 145 Le~Ip 149 (167)
T 3ffl_A 145 LDGIP 149 (167)
T ss_dssp HHTSC
T ss_pred HhcCC
Confidence 97653
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.41 E-value=0.87 Score=48.85 Aligned_cols=52 Identities=10% Similarity=-0.040 Sum_probs=48.8
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHH
Q 040394 610 CGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMK 661 (691)
Q Consensus 610 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 661 (691)
|...|+++.|..+.+++....|.+..+|..|+.+|...|+|+.|.-.++.+.
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 5678999999999999999999999999999999999999999999998874
No 241
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.40 E-value=0.76 Score=42.50 Aligned_cols=86 Identities=8% Similarity=-0.011 Sum_probs=68.3
Q ss_pred hhHHHHHHHHHHHhCCC--ChhHHHHHHHHhHh-----cCChHHHHHHHhccC--CC--ChhhHHHHHHHHHhC-CChhH
Q 040394 162 IDEGMKVHCEIVKVGGP--DSFVLTGLVDMYAK-----CRDIGSSRQVFDETL--DK--NVVSWTSMIAGYVQN-DCAQE 229 (691)
Q Consensus 162 ~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~--~~--~~~~~~~li~~~~~~-g~~~~ 229 (691)
...|+..+++.++..+. +...|..|...|.+ .|+.++|.+.|++.. .| +..++......++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 46788888999998887 77899999999988 489999999998863 34 477777888888874 88888
Q ss_pred HHHHHHHHHhCCCC--CChh
Q 040394 230 GLVLFNRMREGFVE--GNQI 247 (691)
Q Consensus 230 A~~~~~~m~~~~~~--p~~~ 247 (691)
+.+.+++....... |+..
T Consensus 259 a~~~L~kAL~a~p~~~P~~~ 278 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNK 278 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCH
T ss_pred HHHHHHHHHcCCCCCCCChh
Confidence 89999888887665 5543
No 242
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=91.44 E-value=9.8 Score=36.07 Aligned_cols=113 Identities=12% Similarity=0.062 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHH----HHHhhHCCCCCcHHHHHHHHHHH
Q 040394 282 HLVTALLDMYVKCGNIRDARSVFDELCSIDLVSWTAMIVGYTQSGYPDKALKL----FTDKKWADFFPNHVTIASVLSAS 357 (691)
Q Consensus 282 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~g~~p~~~t~~~ll~~~ 357 (691)
.+|.++..-|.+.+++++|.+++..- ...+.+.|+...+.++ ++...+.++++|..+...++..+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 45666777789999999999887653 3456677777665544 46666778889998888888877
Q ss_pred hcCCChhh-HHHHHH----HHHHhC--CC-chhHHHHHHHHhHhcCChHHHHHHHH
Q 040394 358 AQLGNLNM-GRMVHS----LGIRLG--LE-DYTVINALVDMYAKCHVIADARYIFE 405 (691)
Q Consensus 358 ~~~~~~~~-a~~~~~----~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 405 (691)
.....-+- -..+.+ ...+.| +. ++.....+...|.+.+++.+|...|-
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 76554221 122222 223334 23 89999999999999999999999884
No 243
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.91 E-value=11 Score=35.72 Aligned_cols=167 Identities=10% Similarity=0.026 Sum_probs=105.1
Q ss_pred hhhHHHHHHhcCCChHHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHH----HHHHHcCCCCCcchHHHHHHHHc
Q 040394 82 CNTKLVSMYGSFGHVKYARSVFDSMPNPDFYSFQVMIRWYFLNDLYKDIVEFY----KCMRKRLKEHDNFVFSKVLKACC 157 (691)
Q Consensus 82 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~----~~m~~~~~~~~~~~~~~ll~~~~ 157 (691)
.+..+..-|.+++++++|.+++- .-...+.+.|+...|.++- +-+.+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~-----------~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILA-----------SVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHH-----------HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 45567777899999999998763 2334556678777666554 55567788999988888888887
Q ss_pred ccCChh-HHHHHHHHH----HHhC-CC--ChhHHHHHHHHhHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhCCChhH
Q 040394 158 ELRDID-EGMKVHCEI----VKVG-GP--DSFVLTGLVDMYAKCRDIGSSRQVFDETLDKNVVSWTSMIAGYVQNDCAQE 229 (691)
Q Consensus 158 ~~~~~~-~a~~~~~~~----~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 229 (691)
....-+ .=..+.+.+ .+.| .+ |+.....+...|.+.+++.+|+..|---.++....+..++.-+...+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 655322 112233333 3444 33 899999999999999999999988853233333566555544444433222
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHH
Q 040394 230 GLVLFNRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILK 274 (691)
Q Consensus 230 A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~ 274 (691)
+--.+- . .+-.|.-.+++..|...++...+
T Consensus 186 ~dlfia--------------R-aVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 APLYCA--------------R-AVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHH--------------H-HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHH--------------H-HHHHHHHhCCHHHHHHHHHHHHH
Confidence 221111 1 22234456677777777666554
No 244
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=90.87 E-value=5.2 Score=31.87 Aligned_cols=140 Identities=9% Similarity=-0.025 Sum_probs=93.6
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHH
Q 040394 222 VQNDCAQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNIRDAR 301 (691)
Q Consensus 222 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 301 (691)
.-.|..++..++..+.... .+..-||.+|--....-+-+...+.++.+-+ --|. ..+|++....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------HhhhcHHHHH
Confidence 4567778888888777653 3556677777666665555555555544422 1121 2345555555
Q ss_pred HHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCcHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCC
Q 040394 302 SVFDELCSIDLVSWTAMIVGYTQSGYPDKALKLFTDKKWADFFPNHVTIASVLSASAQLGNLNMGRMVHSLGIRLGLE 379 (691)
Q Consensus 302 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 379 (691)
..+-.+.. +....+.-+..+...|+-|+-.+++.++.. +.+|++.....+..+|.+.|+..++..++.++.+.|.+
T Consensus 82 ~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 55544422 444556667788889999999999888543 35778888888888999999999998888888887765
No 245
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.58 E-value=1 Score=35.86 Aligned_cols=76 Identities=7% Similarity=0.099 Sum_probs=48.0
Q ss_pred CCCChhHHHHHHHHHHhcCCh---HHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhH
Q 040394 564 FVPSMKHYVCMVDLLARAGRL---EEALEFMENM-PIEP--DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYY 637 (691)
Q Consensus 564 ~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 637 (691)
-.|+..+--.+..++.+..+. .+++.+++.. ...| ....+-.|.-++.+.|+++.|.+..+.+++..|+|....
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 345555555566667766654 3456666665 2224 233555566677788888888888888888888876554
Q ss_pred HH
Q 040394 638 VL 639 (691)
Q Consensus 638 ~~ 639 (691)
.+
T Consensus 116 ~L 117 (134)
T 3o48_A 116 AL 117 (134)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 246
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.21 E-value=12 Score=35.12 Aligned_cols=167 Identities=8% Similarity=0.040 Sum_probs=105.6
Q ss_pred hhhHHHHHHhcCCChHHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHH----HHHHHHcCCCCCcchHHHHHHHHc
Q 040394 82 CNTKLVSMYGSFGHVKYARSVFDSMPNPDFYSFQVMIRWYFLNDLYKDIVEF----YKCMRKRLKEHDNFVFSKVLKACC 157 (691)
Q Consensus 82 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~----~~~m~~~~~~~~~~~~~~ll~~~~ 157 (691)
.+..+..-|.+++++++|.+++. .-...+.+.|+...|.++ ++-..+.+.+++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~-----------~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELIS-----------QGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHH-----------HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 55667888889999999998863 233455677887777665 555566788888888888888776
Q ss_pred ccCChh-----HHHHHHHHHHHhCC-C--ChhHHHHHHHHhHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhC---CC
Q 040394 158 ELRDID-----EGMKVHCEIVKVGG-P--DSFVLTGLVDMYAKCRDIGSSRQVFDETLDKNVVSWTSMIAGYVQN---DC 226 (691)
Q Consensus 158 ~~~~~~-----~a~~~~~~~~~~~~-~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~ 226 (691)
....-+ -..+......+.|. + ++..+..+...|.+.|++.+|+..|---...+...+..++.-+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 533211 22333333334442 3 8999999999999999999999887633222455555555444443 43
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHH
Q 040394 227 AQEGLVLFNRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILK 274 (691)
Q Consensus 227 ~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~ 274 (691)
..++--.+-+ .+-.+.-.+++..|..+++...+
T Consensus 184 ~~e~dlf~~R---------------aVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 184 DSTVAEFFSR---------------LVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHHHH---------------HHHHHHHTTBHHHHHHHHHHHHH
T ss_pred cchHHHHHHH---------------HHHHHHHhcCHHHHHHHHHHHHH
Confidence 3332221111 12234456788888888776654
No 247
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=90.02 E-value=5.2 Score=32.61 Aligned_cols=97 Identities=8% Similarity=0.145 Sum_probs=51.5
Q ss_pred CCChhhHHHHHHHHHhCCCh------hHHHHHHHHHHhCCCCCChhh-HHHHHHH------HHccCChhhHHHHHHHHHH
Q 040394 208 DKNVVSWTSMIAGYVQNDCA------QEGLVLFNRMREGFVEGNQIT-LGSLVTA------CAKLRALHQGKWLHGYILK 274 (691)
Q Consensus 208 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~p~~~t-~~~li~~------~~~~~~~~~a~~~~~~~~~ 274 (691)
..|..+|-..+...-+.|++ ++..++|++.... ++|+... +..-+.. +...++.+.|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34677888878777777888 7777888877653 5554311 1111110 1122566666666666655
Q ss_pred HCCCCchHHHHHHHHHHHhcCCHHHHHHHHHh
Q 040394 275 IGIEINSHLVTALLDMYVKCGNIRDARSVFDE 306 (691)
Q Consensus 275 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 306 (691)
.+-. -..+|......-.+.|+++.|.+++..
T Consensus 89 ~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~ 119 (161)
T 4h7y_A 89 NCKK-FAFVHISFAQFELSQGNVKKSKQLLQK 119 (161)
T ss_dssp HCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhHH-HHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 4211 144444444444444555555444443
No 248
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.40 E-value=0.83 Score=45.21 Aligned_cols=54 Identities=11% Similarity=0.075 Sum_probs=25.7
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040394 573 CMVDLLARAGRLEEALEFMENM-P-IEPDVSLFGAFLHGCGLYSRFDLGEVMIKKM 626 (691)
Q Consensus 573 ~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 626 (691)
.++..+...|++++|+..+... . .+-+...|..++.++.+.|+..+|...|++.
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444555555555444443 1 2224445555555555555555555555544
No 249
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.37 E-value=4.7 Score=32.53 Aligned_cols=78 Identities=5% Similarity=-0.045 Sum_probs=57.4
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCC-CchhHHHHHHHHHhCCCcHHHHHHHHHHH
Q 040394 587 ALEFMENM-PIEPDVSLFGAFLHGCGLYS---RFDLGEVMIKKMLELHPD-KACYYVLVSNLYASDGRWIRVNQVRELMK 661 (691)
Q Consensus 587 A~~~~~~~-~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 661 (691)
..+-+.+- +..|+..+--.+.+++.++. +..+++.+++++....|. .-.+.+.|+-.+.+.|+|++|.++.+.++
T Consensus 25 lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL 104 (144)
T 1y8m_A 25 LRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 104 (144)
T ss_dssp HHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33334333 33567777667777887765 456788899998888884 34677888888999999999999998888
Q ss_pred hCC
Q 040394 662 QRG 664 (691)
Q Consensus 662 ~~g 664 (691)
+..
T Consensus 105 ~~e 107 (144)
T 1y8m_A 105 EHE 107 (144)
T ss_dssp HTC
T ss_pred hcC
Confidence 754
No 250
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=89.17 E-value=5.4 Score=29.58 Aligned_cols=86 Identities=14% Similarity=0.123 Sum_probs=62.2
Q ss_pred ChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHHHHhhH
Q 040394 261 ALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNIRDARSVFDELCSIDLVSWTAMIVGYTQSGYPDKALKLFTDKKW 340 (691)
Q Consensus 261 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 340 (691)
.-++|.-|-+.+...|. ...+--.-+..+...|++++|..+.+.++-||...|-+|-. .+.|..+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45677777777666554 33333334556889999999999999999999999988765 466888888888877776
Q ss_pred CCCCCcHHHHH
Q 040394 341 ADFFPNHVTIA 351 (691)
Q Consensus 341 ~g~~p~~~t~~ 351 (691)
.| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 45555553
No 251
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=88.33 E-value=5.1 Score=29.66 Aligned_cols=86 Identities=10% Similarity=0.073 Sum_probs=62.5
Q ss_pred ChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHHHHhhH
Q 040394 261 ALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNIRDARSVFDELCSIDLVSWTAMIVGYTQSGYPDKALKLFTDKKW 340 (691)
Q Consensus 261 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 340 (691)
.-++|.-|-+.+...|. ...+--.-+..+...|++++|..+.+.++-||...|-+|-. .+.|..+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45677777776666554 33333334556789999999999999999999999988765 577888888888878777
Q ss_pred CCCCCcHHHHH
Q 040394 341 ADFFPNHVTIA 351 (691)
Q Consensus 341 ~g~~p~~~t~~ 351 (691)
.| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 45555553
No 252
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.27 E-value=1.4 Score=36.72 Aligned_cols=40 Identities=10% Similarity=0.079 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 040394 604 GAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLY 644 (691)
Q Consensus 604 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 644 (691)
-.+..+|.+.|++++|+..++.+....-. +.+...|+++|
T Consensus 126 ykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt-~kvnm~LakLy 165 (167)
T 3ffl_A 126 YKLAECYTVLKQDKDAIAILDGIPSRQRT-PKINMLLANLY 165 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCGGGCC-HHHHHHHHHHC
T ss_pred HHHHHHHHHHCCHHHHHHHHhcCCchhcC-HHHHHHHHHHh
Confidence 33566677888888888888765444333 55666676665
No 253
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.96 E-value=11 Score=37.75 Aligned_cols=25 Identities=8% Similarity=0.017 Sum_probs=11.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHH
Q 040394 465 NVYVGTALLNFYAKCGDAQSARMVF 489 (691)
Q Consensus 465 ~~~~~~~l~~~~~~~g~~~~A~~~~ 489 (691)
+......++..|...|+++...+.+
T Consensus 55 ~~r~l~~iv~l~~~~~~~~~l~e~i 79 (445)
T 4b4t_P 55 SKEVLAKIVDLLASRNKWDDLNEQL 79 (445)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3444444445555555554444333
No 254
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.76 E-value=22 Score=34.81 Aligned_cols=128 Identities=11% Similarity=0.003 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC---chhHHHHHHHHHHhc-CCHHHHHHHHHhccc---CCHhHH---
Q 040394 431 VTLVSVISACASLGAVQVGSSLHAYSTKQGLLSS---NVYVGTALLNFYAKC-GDAQSARMVFDAMRE---KNTVTW--- 500 (691)
Q Consensus 431 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~---~~~~~~--- 500 (691)
.....|...|.+.|+.++...++......-...+ .......+++.+... +..+.-.++..+..+ .+-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666655432110011 122334455555443 222222233322221 111122
Q ss_pred ---HHHHHHHhcCCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhcccCCHHHHHHHHHHc
Q 040394 501 ---SAMIGGYGMQGDGGGSLALFSDMLNEEVQPNE-----VIFTTILSACSHTGMVGEGWKCFYSM 558 (691)
Q Consensus 501 ---~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~A~~~~~~m 558 (691)
.-++..|...|++.+|.+++.++.+.=-..|. ..+..-++.|...+++.++...+...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 13556666666666666666666552111111 22333344555566666666666544
No 255
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=87.14 E-value=32 Score=36.09 Aligned_cols=390 Identities=7% Similarity=-0.092 Sum_probs=186.0
Q ss_pred hhhHHHHHHhcCCChHHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHcccCC
Q 040394 82 CNTKLVSMYGSFGHVKYARSVFDSMPNPDFYSFQVMIRWYFLNDLYKDIVEFYKCMRKRLKEHDNFVFSKVLKACCELRD 161 (691)
Q Consensus 82 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 161 (691)
+-..-+..+++.+++......+.. +..+...--....+....|+..+|......+-..| ...+..+..++..+.+.|.
T Consensus 74 Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 74 LQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGK 151 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCC
Confidence 566678888889999998887776 43344444445666777888888877777776654 3345566666666665554
Q ss_pred hhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 040394 162 IDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDETLDKNVVSWTSMIAGYVQNDCAQEGLVLFNRMREGF 241 (691)
Q Consensus 162 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 241 (691)
+.... .-.-+......|+...|..+...+..........++.... +...+......
T Consensus 152 lt~~~----------------~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~----- 207 (618)
T 1qsa_A 152 QDPLA----------------YLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFART----- 207 (618)
T ss_dssp SCHHH----------------HHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHH-----
T ss_pred CCHHH----------------HHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhc-----
Confidence 43221 1112233445566666666666552221112222222221 22222222221
Q ss_pred CCCChhh---HHHHHHHHHccCChhhHHHHHHHHHHHCCCCchHH----HHHHHHHHHhcCCHHHHHHHHHhc--CCCCh
Q 040394 242 VEGNQIT---LGSLVTACAKLRALHQGKWLHGYILKIGIEINSHL----VTALLDMYVKCGNIRDARSVFDEL--CSIDL 312 (691)
Q Consensus 242 ~~p~~~t---~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~~--~~~~~ 312 (691)
+.|+... +...+.-+.+. +.+.|...+....+.+. .+... ...+...+...+...++...+... ...+.
T Consensus 208 ~~~~~~~~~~~~~~~~rlar~-d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (618)
T 1qsa_A 208 TGATDFTRQMAAVAFASVARQ-DAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQST 285 (618)
T ss_dssp SCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCH
T ss_pred cCCChhhHHHHHHHHHHHHhc-CHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCCh
Confidence 1122221 11122222222 55667777666654432 12221 222222222333233444444443 12222
Q ss_pred hHHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCcHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhH
Q 040394 313 VSWTAMIVGYTQSGYPDKALKLFTDKKWADFFPNHVTIASVLSASAQLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYA 392 (691)
Q Consensus 313 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 392 (691)
....-.+....+.|+++.|...|+.|..... ......--+..++...|+.++|..++..+.+. . ..|..+.. .
T Consensus 286 ~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~--~--~fYg~lAa--~ 358 (618)
T 1qsa_A 286 SLIERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQ--R--GFYPMVAA--Q 358 (618)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--C--SHHHHHHH--H
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC--C--ChHHHHHH--H
Confidence 2222233334456777777777777655321 12333334445666667777777777666542 1 22332211 1
Q ss_pred hcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCC---CHH---HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCch
Q 040394 393 KCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSP---DAV---TLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNV 466 (691)
Q Consensus 393 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p---~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 466 (691)
+.|..- ..... .+.+ ... .-...+..+...|....|...+..+.+.. + .
T Consensus 359 ~Lg~~~-------~~~~~--------------~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~--~ 413 (618)
T 1qsa_A 359 RIGEEY-------ELKID--------------KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--S--K 413 (618)
T ss_dssp HTTCCC-------CCCCC--------------CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--C--H
T ss_pred HcCCCC-------CCCCC--------------CCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC--C--H
Confidence 122100 00000 0001 000 11223445667888888888888776542 2 2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcccCCH------hHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCC
Q 040394 467 YVGTALLNFYAKCGDAQSARMVFDAMREKNT------VTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPN 531 (691)
Q Consensus 467 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 531 (691)
.-...+.......|..+.+..........+. ..|..++..+++.-.++..+-.---..+.++.|+
T Consensus 414 ~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p~ 484 (618)
T 1qsa_A 414 TEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNPK 484 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSCCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCC
Confidence 3333455556677777777666554443321 1344455555554444443332222334445554
No 256
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=87.06 E-value=2.6 Score=33.54 Aligned_cols=69 Identities=6% Similarity=-0.020 Sum_probs=45.6
Q ss_pred CCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCC-CchhHHHHHHHHHhCCCcHHHHHHHHHHHhC
Q 040394 595 PIEPDVSLFGAFLHGCGLYS---RFDLGEVMIKKMLELHPD-KACYYVLVSNLYASDGRWIRVNQVRELMKQR 663 (691)
Q Consensus 595 ~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 663 (691)
+..|+..+--.+.+++.++. +..+++.+++++.+..|. ...+++.|+-.+.+.|++++|.+..+.+++.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 44556665555666666554 344677777777776663 3456677777777777777777777777764
No 257
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.03 E-value=33 Score=34.32 Aligned_cols=51 Identities=10% Similarity=0.046 Sum_probs=32.5
Q ss_pred CChhHHHHHHHHHHHc-----CCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHh
Q 040394 125 DLYKDIVEFYKCMRKR-----LKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKV 175 (691)
Q Consensus 125 ~~~~~a~~~~~~m~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 175 (691)
|++++|++.+-.+.+. ....+......++..|...|+++...+.+..+.+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskk 85 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKK 85 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 6777887777665542 12333445666777777888888777766655543
No 258
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=84.04 E-value=4.6 Score=30.12 Aligned_cols=63 Identities=13% Similarity=0.174 Sum_probs=48.1
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHH
Q 040394 512 DGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVD 576 (691)
Q Consensus 512 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 576 (691)
|.=+..+-+..+....+.|++......+++|-+..++..|.++++.+..+ +.+...+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH
Confidence 34456667777777888999999999999999999999999999988544 3344556776654
No 259
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=83.83 E-value=11 Score=32.58 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHh--cCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCCC
Q 040394 616 FDLGEVMIKKMLE--LHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRGL 665 (691)
Q Consensus 616 ~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 665 (691)
...+..+|..|.. +.-..+..|...+..+...|++++|.++|+.=++++-
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 4455555555554 3444445555555556666666666666555555444
No 260
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=83.63 E-value=3.8 Score=30.58 Aligned_cols=59 Identities=12% Similarity=0.209 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHcCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHH
Q 040394 129 DIVEFYKCMRKRLKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLV 187 (691)
Q Consensus 129 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 187 (691)
+..+-++.+....+.|++......+++|.+.+++..|.++++-++..-.....+|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 44455556666677888888888888888888888888888877765433344555554
No 261
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=83.33 E-value=8.5 Score=41.34 Aligned_cols=54 Identities=13% Similarity=0.142 Sum_probs=50.0
Q ss_pred HHHhcCCChhhHHHHHHHHHHhCCCchhHHHHHHHHhHhcCChHHHHHHHHhCC
Q 040394 355 SASAQLGNLNMGRMVHSLGIRLGLEDYTVINALVDMYAKCHVIADARYIFETTS 408 (691)
Q Consensus 355 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 408 (691)
..|...|+++.|..+-+......|.+..+|..|..+|...|+++.|+-.++.++
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 356778999999999999999999999999999999999999999999999997
No 262
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=83.06 E-value=12 Score=27.89 Aligned_cols=79 Identities=11% Similarity=0.011 Sum_probs=56.5
Q ss_pred CChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHh
Q 040394 160 RDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDETLDKNVVSWTSMIAGYVQNDCAQEGLVLFNRMRE 239 (691)
Q Consensus 160 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 239 (691)
...++|..+-+.+...+. ...+--.-+..+...|++++|..+.+.+.-||...|-+|-. .+.|..+++..-+.++..
T Consensus 21 H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 356667666666666554 33344444567788899999999999999999999988765 366777777777767765
Q ss_pred CC
Q 040394 240 GF 241 (691)
Q Consensus 240 ~~ 241 (691)
+|
T Consensus 98 sg 99 (116)
T 2p58_C 98 SQ 99 (116)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 263
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=82.69 E-value=11 Score=27.98 Aligned_cols=79 Identities=6% Similarity=-0.060 Sum_probs=57.3
Q ss_pred CChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHh
Q 040394 160 RDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDETLDKNVVSWTSMIAGYVQNDCAQEGLVLFNRMRE 239 (691)
Q Consensus 160 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 239 (691)
...++|..+-+.+...+. ...+--.-+..+...|++++|..+.+.+.-||...|-+|-. .+.|..+++..-+.++..
T Consensus 20 H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ-DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 355666666666665554 33344444567788999999999999999999999988765 467887887777777766
Q ss_pred CC
Q 040394 240 GF 241 (691)
Q Consensus 240 ~~ 241 (691)
+|
T Consensus 97 sg 98 (115)
T 2uwj_G 97 SS 98 (115)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 264
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=82.29 E-value=77 Score=36.39 Aligned_cols=61 Identities=7% Similarity=-0.113 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHhCCC-c----hhHHHHHHHHhHhcCChHHHHHHHHhCC
Q 040394 348 VTIASVLSASAQLGNLNMGRMVHSLGIRLGLE-D----YTVINALVDMYAKCHVIADARYIFETTS 408 (691)
Q Consensus 348 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 408 (691)
.-|..++..+.+.+.++.+.++-..+.+.... + ...|..+.+.+...|++++|...+-.++
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p 965 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLS 965 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC
Confidence 34555566666666666666665555544332 1 1245566666666677766666665544
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=81.65 E-value=10 Score=34.48 Aligned_cols=121 Identities=10% Similarity=0.116 Sum_probs=71.1
Q ss_pred HHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChh----HHHHHHHHHHh
Q 040394 505 GGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMK----HYVCMVDLLAR 580 (691)
Q Consensus 505 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~----~~~~li~~~~~ 580 (691)
..+.+.|+.+++++....-++.. +-|...=..+++.+|-.|++++|.+-++... .+.|+.. .|..+|.+-
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a---~l~p~~~~~a~~yr~lI~aE-- 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI---KLFPEYLPGASQLRHLVKAA-- 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHCGGGHHHHHHHHHHHHHH--
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCchhhHHHHHHHHHHHHH--
Confidence 34567788888888877777752 4455555667778888888888888777663 2456532 333333221
Q ss_pred cCChHHHHHHHHhC---C-CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCch
Q 040394 581 AGRLEEALEFMENM---P-IEPDVSLFGAFLHGCG--LYSRFDLGEVMIKKMLELHPDKAC 635 (691)
Q Consensus 581 ~g~~~~A~~~~~~~---~-~~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~ 635 (691)
... .++|..- + ......-...++.+.. ..|+.++|..+-.++.+..|..+.
T Consensus 79 --~~R--~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 79 --QAR--KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp --HHH--HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred --HHH--HHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 111 1122221 0 1112223344445443 468999999999988888777543
No 266
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=81.29 E-value=3.3 Score=37.62 Aligned_cols=59 Identities=20% Similarity=0.313 Sum_probs=42.7
Q ss_pred HHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 040394 576 DLLARAGRLEEALEFMENM-P-IEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKA 634 (691)
Q Consensus 576 ~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 634 (691)
..+.+.|++++|++.+..- + .+-|...-..|+..+|-.|++++|.+-++...+++|+..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 3456778888887776665 3 334555666777888888888888888888888888843
No 267
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=81.26 E-value=8.1 Score=38.04 Aligned_cols=70 Identities=13% Similarity=0.128 Sum_probs=47.9
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchh----hcCCCCChhH
Q 040394 500 WSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCR----DFKFVPSMKH 570 (691)
Q Consensus 500 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~----~~~~~p~~~~ 570 (691)
...++..+...|++++++..++.+.... +-+...+..++.++...|+..+|.+.|+.+.+ +.|+.|...+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3445666777788888887777776642 44666777778888888888888777776532 4567776554
No 268
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=80.34 E-value=85 Score=36.01 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=14.9
Q ss_pred ChhHHHHHHHHhHhcCChHHHHHHHhcc
Q 040394 179 DSFVLTGLVDMYAKCRDIGSSRQVFDET 206 (691)
Q Consensus 179 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 206 (691)
++...-.+..+|..+|++++|...|.+.
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3333344455555666666666666543
No 269
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=78.70 E-value=18 Score=29.64 Aligned_cols=78 Identities=9% Similarity=0.018 Sum_probs=50.1
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhC
Q 040394 587 ALEFMENM-PIEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLE--LHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQR 663 (691)
Q Consensus 587 A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 663 (691)
+...|..- ..+.|..-...-+..--...+ +..+|+.+.. +.-..+..|...+..+...|++++|.++++.=+++
T Consensus 54 c~~~f~~~~~YknD~RyLklWl~ya~~~~d---p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 54 LMKEFLDKKKYHNDPRFISYCLKFAEYNSD---LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp HHHHHTTCGGGTTCHHHHHHHHHHHTTBSC---HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHhcccccccCCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 34444443 455566533333332222333 6777777776 55666778888888888889999998888887777
Q ss_pred CCcc
Q 040394 664 GLSK 667 (691)
Q Consensus 664 g~~~ 667 (691)
+-+|
T Consensus 131 ~A~P 134 (152)
T 4a1g_A 131 QAEP 134 (152)
T ss_dssp TCBS
T ss_pred CCcc
Confidence 6554
No 270
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=77.16 E-value=15 Score=29.13 Aligned_cols=61 Identities=11% Similarity=0.151 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHH
Q 040394 514 GGSLALFSDMLNEEVQPNEVIFTTILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVD 576 (691)
Q Consensus 514 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 576 (691)
=+..+-+..+....+.|++......+.+|-+.+|+..|.++++.+..+ +.+...+|..++.
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 345666677777789999999999999999999999999999988444 4445666777664
No 271
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=75.24 E-value=22 Score=29.54 Aligned_cols=49 Identities=10% Similarity=0.093 Sum_probs=30.1
Q ss_pred HHHHHHHHHh--cCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCCCcc
Q 040394 619 GEVMIKKMLE--LHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRGLSK 667 (691)
Q Consensus 619 A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 667 (691)
+..+|+.|.. +.-..+..|...+..+...|++.+|.++++.=++++-+|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4455555554 445555666666677777777777777776666655443
No 272
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=75.11 E-value=47 Score=30.22 Aligned_cols=49 Identities=10% Similarity=0.039 Sum_probs=28.4
Q ss_pred HccCChhhHHHHHHHHHHHCCCCchHH--HHHHHHHHHhcCCHHHHHHHHH
Q 040394 257 AKLRALHQGKWLHGYILKIGIEINSHL--VTALLDMYVKCGNIRDARSVFD 305 (691)
Q Consensus 257 ~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~ 305 (691)
+..++.....++.+.+.+.|..++... -.+.+...++.|+.+-+..+++
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 345555555667777777776554321 1223444556677777776666
No 273
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=73.99 E-value=9.8 Score=30.15 Aligned_cols=60 Identities=12% Similarity=0.210 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHcCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHH
Q 040394 129 DIVEFYKCMRKRLKEHDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVD 188 (691)
Q Consensus 129 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 188 (691)
+..+-++.+....+.|++......+++|.+.+|+..|..+++-++.+-.+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 344455556666788888888888899888888888888888887665444445655543
No 274
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.99 E-value=21 Score=35.57 Aligned_cols=59 Identities=7% Similarity=0.061 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040394 570 HYVCMVDLLARAGRLEEALEFMENM-----PIEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLE 628 (691)
Q Consensus 570 ~~~~li~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (691)
+...+...|.+.|++++|.+.+.++ +...-...+...++.+...+|+..+...++++..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444555555555555555555555 1111223444555555555566555555555544
No 275
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=69.44 E-value=20 Score=32.88 Aligned_cols=57 Identities=14% Similarity=-0.019 Sum_probs=27.3
Q ss_pred HHHHhcCCHHHHHHHHHhc-CC---CChhHHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCc
Q 040394 289 DMYVKCGNIRDARSVFDEL-CS---IDLVSWTAMIVGYTQSGYPDKALKLFTDKKWADFFPN 346 (691)
Q Consensus 289 ~~~~~~g~~~~A~~~~~~~-~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 346 (691)
...+..|+.+-...+++.. .. .+..-.+.+.. .+..+......++++.+.+.|..++
T Consensus 153 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 153 MDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp HHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSS
T ss_pred HHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCC
Confidence 3345566766666666542 11 12222222222 2334554445556666666665543
No 276
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.81 E-value=59 Score=32.33 Aligned_cols=56 Identities=9% Similarity=0.029 Sum_probs=28.7
Q ss_pred HHHHHHHHhHhcCChHHHHHHHhccCC------CChhhHHHHHHHHHhCCChhHHHHHHHHH
Q 040394 182 VLTGLVDMYAKCRDIGSSRQVFDETLD------KNVVSWTSMIAGYVQNDCAQEGLVLFNRM 237 (691)
Q Consensus 182 ~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m 237 (691)
+...+...|.+.|++++|.+.+.++.. .-...+-.+|+.+...+++..+...+++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 444455555555555555555554421 12234455555555556666665555554
No 277
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=66.43 E-value=8.9 Score=31.43 Aligned_cols=41 Identities=17% Similarity=0.241 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhCCCCch--hhhHHHHHHhcCCChHHHHHHhcc
Q 040394 65 LKAFHALLIVDGLTNDK--CNTKLVSMYGSFGHVKYARSVFDS 105 (691)
Q Consensus 65 a~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~ 105 (691)
...++..+..+|+-... +|......+...|++.+|.++|..
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 126 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQR 126 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555555443333 444455555555555555555443
No 278
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=62.88 E-value=72 Score=27.24 Aligned_cols=17 Identities=12% Similarity=-0.095 Sum_probs=6.6
Q ss_pred CChhHHHHHHHHHHhcC
Q 040394 310 IDLVSWTAMIVGYTQSG 326 (691)
Q Consensus 310 ~~~~~~~~li~~~~~~g 326 (691)
++...-...+.++.+.|
T Consensus 150 ~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 150 EDGWVRQSAADALGEIG 166 (201)
T ss_dssp SSHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 33333333334444433
No 279
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=60.72 E-value=82 Score=27.15 Aligned_cols=48 Identities=10% Similarity=-0.001 Sum_probs=22.4
Q ss_pred ChhHHHHHHHHhHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhCCC
Q 040394 179 DSFVLTGLVDMYAKCRDIGSSRQVFDETLDKNVVSWTSMIAGYVQNDC 226 (691)
Q Consensus 179 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 226 (691)
+..+....+..+.+.|+.+....+.+.+.+++...-...+.++.+.+.
T Consensus 32 ~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 79 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 444455555555555554333334444444444444444444444443
No 280
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=59.87 E-value=85 Score=27.06 Aligned_cols=59 Identities=8% Similarity=0.091 Sum_probs=45.6
Q ss_pred cCcHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHhHHH
Q 040394 443 LGAVQVGSSLHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMREKNTVTWS 501 (691)
Q Consensus 443 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 501 (691)
.+....+..+|..|...|+-......|......+...|++.+|.++|+.-.+....-..
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 44577889999999988876677788888888888899999998888877654433333
No 281
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=57.60 E-value=70 Score=28.17 Aligned_cols=24 Identities=4% Similarity=0.029 Sum_probs=12.2
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCC
Q 040394 121 YFLNDLYKDIVEFYKCMRKRLKEH 144 (691)
Q Consensus 121 ~~~~~~~~~a~~~~~~m~~~~~~~ 144 (691)
.++.|+.+-+..+++.+.+.|..+
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~~~~ 39 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGGREL 39 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCC
Confidence 344555555555555554444433
No 282
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=56.39 E-value=23 Score=31.34 Aligned_cols=13 Identities=15% Similarity=0.462 Sum_probs=5.8
Q ss_pred cCCChHHHHHHhc
Q 040394 92 SFGHVKYARSVFD 104 (691)
Q Consensus 92 ~~g~~~~A~~~~~ 104 (691)
+.|+.+....+++
T Consensus 18 ~~g~~~~~~~Ll~ 30 (240)
T 3eu9_A 18 QYGIYERCRELVE 30 (240)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCChHHHHHHHH
Confidence 3444444444443
No 283
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=55.79 E-value=74 Score=25.13 Aligned_cols=67 Identities=18% Similarity=0.237 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCh---hHHHHHHHHHHhcCC--chhHHHHHHHhhHCCCCCcHHHH
Q 040394 284 VTALLDMYVKCGNIRDARSVFDELCSIDL---VSWTAMIVGYTQSGY--PDKALKLFTDKKWADFFPNHVTI 350 (691)
Q Consensus 284 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~t~ 350 (691)
.+.++.-|...|+.++|.+.++++..|.- .+...+..++-+.++ .+.+.+++..+...|+-+.....
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~ 81 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 81 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHH
Confidence 35567778888888888888888865522 233444444444432 35567777777777766555443
No 284
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=55.78 E-value=73 Score=29.31 Aligned_cols=16 Identities=13% Similarity=0.212 Sum_probs=7.7
Q ss_pred HHhcCCHHHHHHHHHh
Q 040394 291 YVKCGNIRDARSVFDE 306 (691)
Q Consensus 291 ~~~~g~~~~A~~~~~~ 306 (691)
.++.|+.+-+.-+++.
T Consensus 202 A~~~~~~~~v~~Ll~~ 217 (285)
T 3kea_A 202 AIDNKDIEMLQALFKY 217 (285)
T ss_dssp HHHHTCHHHHHHHTTS
T ss_pred HHHcCCHHHHHHHHHc
Confidence 3445555544444444
No 285
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=55.36 E-value=97 Score=26.36 Aligned_cols=81 Identities=12% Similarity=0.055 Sum_probs=38.1
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHHHHhhHCCCCCcHHHHHHHHHHHh
Q 040394 279 INSHLVTALLDMYVKCGNIRDARSVFDELCSIDLVSWTAMIVGYTQSGYPDKALKLFTDKKWADFFPNHVTIASVLSASA 358 (691)
Q Consensus 279 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 358 (691)
++..+-...+.++.+.|+.+....+.+.+..++...-...+.++.+.+.. ++...+..+.. .++...-...+.++.
T Consensus 88 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~ 163 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALG 163 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 34444444555555555543333334444445554444555555555543 33333333332 245555555555555
Q ss_pred cCCCh
Q 040394 359 QLGNL 363 (691)
Q Consensus 359 ~~~~~ 363 (691)
..|..
T Consensus 164 ~~~~~ 168 (201)
T 3ltj_A 164 EIGGE 168 (201)
T ss_dssp HHCSH
T ss_pred HhCch
Confidence 55543
No 286
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=54.93 E-value=60 Score=28.60 Aligned_cols=45 Identities=9% Similarity=-0.024 Sum_probs=21.4
Q ss_pred cCchhHHHHHHHHHHhCCCCch---hhhHHHHHHhcCCChHHHHHHhc
Q 040394 60 KSTGSLKAFHALLIVDGLTNDK---CNTKLVSMYGSFGHVKYARSVFD 104 (691)
Q Consensus 60 ~~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~ 104 (691)
|+.+..+.+.+.....+...+. .....+...+..|+.+-...+++
T Consensus 20 g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 67 (241)
T 1k1a_A 20 GNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 67 (241)
T ss_dssp TCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHH
Confidence 5666666666655554433222 12223333444555555555554
No 287
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=54.58 E-value=1e+02 Score=26.45 Aligned_cols=80 Identities=14% Similarity=0.038 Sum_probs=35.8
Q ss_pred CCcchHHHHHHHHcccCChhHHHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhccCCCChhhHHHHHHHHHh
Q 040394 144 HDNFVFSKVLKACCELRDIDEGMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDETLDKNVVSWTSMIAGYVQ 223 (691)
Q Consensus 144 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 223 (691)
++...-...+..+.+.++.+....+.+ +.. -++..+....+.++.+.++.+....+.+.+.+++...-...+.++.+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~-~l~--~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~ 107 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIK-ALK--DEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQ 107 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHH-HTT--CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHH-HHc--CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 344444445555555554332222222 222 12455555555555555554433334444444454444444444444
Q ss_pred CCC
Q 040394 224 NDC 226 (691)
Q Consensus 224 ~g~ 226 (691)
.|+
T Consensus 108 ~~~ 110 (211)
T 3ltm_A 108 IGD 110 (211)
T ss_dssp HCC
T ss_pred hCc
Confidence 444
No 288
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.34 E-value=27 Score=35.37 Aligned_cols=67 Identities=7% Similarity=0.088 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHH------HH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 040394 568 MKHYVCMVDLLARAGRLEEALEFMENMPIEPDVS------LF-GAFLHGCGLYSRFDLGEVMIKKMLELHPDKA 634 (691)
Q Consensus 568 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~------~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 634 (691)
...+|.+++.|...+.++.|..+..+..++.+.. .| -.++..+...+++.+|.+.+..+++..|.+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 4567777888888888888888888875432211 11 2234555677888888888888888777654
No 289
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=51.05 E-value=60 Score=26.61 Aligned_cols=67 Identities=18% Similarity=0.237 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCh---hHHHHHHHHHHhcCC--chhHHHHHHHhhHCCCCCcHHHH
Q 040394 284 VTALLDMYVKCGNIRDARSVFDELCSIDL---VSWTAMIVGYTQSGY--PDKALKLFTDKKWADFFPNHVTI 350 (691)
Q Consensus 284 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~t~ 350 (691)
.+.++.-|...|+.++|.+.++++..|.. .+...+..++-+.++ .+.+..++..+...|+-+.....
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~ 83 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 83 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHH
Confidence 45677778888888888888888865522 234444444444322 34567777777777765555443
No 290
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=50.48 E-value=71 Score=28.05 Aligned_cols=29 Identities=7% Similarity=0.101 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040394 601 SLFGAFLHGCGLYSRFDLGEVMIKKMLEL 629 (691)
Q Consensus 601 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (691)
..|......+...|++.+|..+|+..++.
T Consensus 151 lfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 151 IFYEEYANYFESRGLFQKADEVYQKGKRM 179 (223)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 34555555555666666666666666653
No 291
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=48.52 E-value=82 Score=27.55 Aligned_cols=44 Identities=7% Similarity=0.006 Sum_probs=24.7
Q ss_pred cCchhHHHHHHHHHHhCCCCch---hhhHHHHHHhcCCChHHHHHHhccCC
Q 040394 60 KSTGSLKAFHALLIVDGLTNDK---CNTKLVSMYGSFGHVKYARSVFDSMP 107 (691)
Q Consensus 60 ~~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~ 107 (691)
++.+..+.+. +.|...+. .....+...++.|+.+-+..+++.-.
T Consensus 20 g~~~~~~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~ 66 (240)
T 3eu9_A 20 GIYERCRELV----EAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGA 66 (240)
T ss_dssp TCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CChHHHHHHH----HcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence 5555554444 44543322 23335556677788887777777644
No 292
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=48.45 E-value=1e+02 Score=26.04 Aligned_cols=75 Identities=8% Similarity=-0.100 Sum_probs=34.0
Q ss_pred HhcCCChHHHHHHhccCC-C---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcch--HHHHHHHHcccCChh
Q 040394 90 YGSFGHVKYARSVFDSMP-N---PDFYSFQVMIRWYFLNDLYKDIVEFYKCMRKRLKEHDNFV--FSKVLKACCELRDID 163 (691)
Q Consensus 90 ~~~~g~~~~A~~~~~~~~-~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~ 163 (691)
.+..|+.+....++..-. . .+..-++.|. ..++.|+. ++++.+.+.|..++... -.+.+...+..|+.+
T Consensus 12 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~-~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~ 86 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTPLN-IAVHNNDI----EIAKALIDRGADINLQNSISDSPYLYAGAQGRTE 86 (201)
T ss_dssp HHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHH-HHHHHTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHH-HHHHcCCH----HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 345677777777776543 2 2222223332 23344553 34444555555544322 122233334455555
Q ss_pred HHHHHH
Q 040394 164 EGMKVH 169 (691)
Q Consensus 164 ~a~~~~ 169 (691)
-+..++
T Consensus 87 ~~~~Ll 92 (201)
T 3hra_A 87 ILAYML 92 (201)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 293
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=48.30 E-value=1.3e+02 Score=25.71 Aligned_cols=38 Identities=8% Similarity=0.100 Sum_probs=19.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 040394 607 LHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLY 644 (691)
Q Consensus 607 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 644 (691)
+..|.+.|.+++|.+++++..+..|++...-.-|..+-
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II 161 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMII 161 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHH
T ss_pred HHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 44566677777777777776665555444444444443
No 294
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=47.54 E-value=45 Score=27.73 Aligned_cols=42 Identities=12% Similarity=0.131 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHhCCCCch--hhhHHHHHHhcCCChHHHHHHhcc
Q 040394 64 SLKAFHALLIVDGLTNDK--CNTKLVSMYGSFGHVKYARSVFDS 105 (691)
Q Consensus 64 ~a~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~ 105 (691)
....++..+..+|+.... +|......+...|++..|.++|..
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~ 121 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQE 121 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344455555555543333 455555555555555555555443
No 295
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=47.01 E-value=1.6e+02 Score=27.56 Aligned_cols=66 Identities=17% Similarity=0.194 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccCC---HhHHHHHHHHHhcCCC--hHHHHHHHHHHHHCCCCCCHHH
Q 040394 469 GTALLNFYAKCGDAQSARMVFDAMREKN---TVTWSAMIGGYGMQGD--GGGSLALFSDMLNEEVQPNEVI 534 (691)
Q Consensus 469 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~g~~p~~~~ 534 (691)
...++.-|...|+.++|...++++..|. .....++..++-+.++ .+....++..+.+.|+-+....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 3567888888999999999999998762 3345556666666433 4557788888887776555443
No 296
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=46.74 E-value=35 Score=30.80 Aligned_cols=88 Identities=9% Similarity=-0.153 Sum_probs=50.2
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCcch-------HHHHHHHH--cccCChhHHHHHHHHHHHhC---------CC--C
Q 040394 120 WYFLNDLYKDIVEFYKCMRKRLKEHDNFV-------FSKVLKAC--CELRDIDEGMKVHCEIVKVG---------GP--D 179 (691)
Q Consensus 120 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-------~~~ll~~~--~~~~~~~~a~~~~~~~~~~~---------~~--~ 179 (691)
..++.|+.+....+++.+.+.|..++... .+.+..+. ++.|+.+-+..+++.-...+ .. |
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d 90 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVY 90 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSS
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccc
Confidence 34567888888888887777776665433 23333332 26678877777776654321 11 1
Q ss_pred hhHHHHHHHHhHhcCChHHHHHHHhccCC
Q 040394 180 SFVLTGLVDMYAKCRDIGSSRQVFDETLD 208 (691)
Q Consensus 180 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 208 (691)
... .+.+...+..|+.+-+.-+++.-..
T Consensus 91 ~~g-~t~L~~A~~~g~~~~v~~Ll~~ga~ 118 (260)
T 3jxi_A 91 YRG-QTALHIAIERRCKHYVELLVEKGAD 118 (260)
T ss_dssp EES-BCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred cCC-CCHHHHHHHcCCHHHHHHHHhCCCC
Confidence 122 2334445566777777766665433
No 297
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=46.32 E-value=1.8e+02 Score=32.55 Aligned_cols=51 Identities=2% Similarity=-0.125 Sum_probs=30.2
Q ss_pred HHHHhcccCCHHHHHHHHHHchhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 040394 538 ILSACSHTGMVGEGWKCFYSMCRDFKFVPSMKHYVCMVDLLARAGRLEEALEFMENM 594 (691)
Q Consensus 538 ll~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 594 (691)
++..|...|.++-+.++...+ +.++..--.+..+|...|++++|.+.|+++
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~------~~t~~~~yv~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC------CSSHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhcHHHHHHHHHhhc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445556666666655543322 223222234666777788888888888777
No 298
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=46.18 E-value=84 Score=28.02 Aligned_cols=21 Identities=5% Similarity=-0.116 Sum_probs=13.5
Q ss_pred HHHHHhCCChhHHHHHHHHHH
Q 040394 218 IAGYVQNDCAQEGLVLFNRMR 238 (691)
Q Consensus 218 i~~~~~~g~~~~A~~~~~~m~ 238 (691)
++.+....++++|.+++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 456666677777776666554
No 299
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=45.80 E-value=91 Score=24.62 Aligned_cols=65 Identities=15% Similarity=0.176 Sum_probs=41.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccCC---HhHHHHHHHHHhcCCC--hHHHHHHHHHHHHCCCCCCHH
Q 040394 469 GTALLNFYAKCGDAQSARMVFDAMREKN---TVTWSAMIGGYGMQGD--GGGSLALFSDMLNEEVQPNEV 533 (691)
Q Consensus 469 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~g~~p~~~ 533 (691)
...++.-|...|+.++|...++++..|. ......+..++-+.++ .+.+..++..+.+.|+-+...
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 3556777777888888888888877552 2344445555555432 355777788887777554443
No 300
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=45.44 E-value=46 Score=29.27 Aligned_cols=59 Identities=10% Similarity=0.100 Sum_probs=37.2
Q ss_pred cCchhHHHHHHHHHHhCCCCch--hhhHHHHHHhcCCChHHHHHHhccCCCCCcchHHHHH
Q 040394 60 KSTGSLKAFHALLIVDGLTNDK--CNTKLVSMYGSFGHVKYARSVFDSMPNPDFYSFQVMI 118 (691)
Q Consensus 60 ~~~~~a~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll 118 (691)
...+....++..+..+|+.... +|......+...|++.+|..+|..-.+........|.
T Consensus 128 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~ 188 (223)
T 4aez_C 128 NYIDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQ 188 (223)
T ss_dssp TTCSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHH
T ss_pred HccCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHH
Confidence 3345666777777777765554 6777777777777777777777654433333333333
No 301
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=38.54 E-value=77 Score=25.93 Aligned_cols=65 Identities=15% Similarity=0.176 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccCC---HhHHHHHHHHHhcCCC--hHHHHHHHHHHHHCCCCCCHH
Q 040394 469 GTALLNFYAKCGDAQSARMVFDAMREKN---TVTWSAMIGGYGMQGD--GGGSLALFSDMLNEEVQPNEV 533 (691)
Q Consensus 469 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~g~~p~~~ 533 (691)
...++.-|...|+.++|...++++..|. ......+..++-+.++ .+.+..++..+.+.|+-+...
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 3556777777788888888888876552 2344445555555322 345677777777776554433
No 302
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=37.85 E-value=1.5e+02 Score=29.25 Aligned_cols=15 Identities=7% Similarity=0.025 Sum_probs=6.6
Q ss_pred HHHHHcccCChhHHH
Q 040394 152 VLKACCELRDIDEGM 166 (691)
Q Consensus 152 ll~~~~~~~~~~~a~ 166 (691)
.+...+..|+.+-+.
T Consensus 50 ~L~~A~~~g~~~~v~ 64 (437)
T 1n11_A 50 PLHMAARAGHTEVAK 64 (437)
T ss_dssp HHHHHHHHTCHHHHH
T ss_pred HHHHHHHcCCHHHHH
Confidence 333444455544333
No 303
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=37.15 E-value=1.2e+02 Score=26.96 Aligned_cols=23 Identities=13% Similarity=0.011 Sum_probs=15.3
Q ss_pred HHHHHHhCCChhHHHHHHHHHHH
Q 040394 117 MIRWYFLNDLYKDIVEFYKCMRK 139 (691)
Q Consensus 117 ll~~~~~~~~~~~a~~~~~~m~~ 139 (691)
-+..+....++++|.+++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 35566677777777777776553
No 304
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=37.00 E-value=80 Score=23.38 Aligned_cols=37 Identities=8% Similarity=0.010 Sum_probs=26.2
Q ss_pred CChHHHHHHHhccCCCChhhHHHHHHHHHhCCChhHH
Q 040394 194 RDIGSSRQVFDETLDKNVVSWTSMIAGYVQNDCAQEG 230 (691)
Q Consensus 194 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 230 (691)
...+.|.++++.++.+...+|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 4567777777777777777788888777665655444
No 305
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=36.79 E-value=2.4e+02 Score=25.46 Aligned_cols=20 Identities=10% Similarity=-0.052 Sum_probs=8.5
Q ss_pred CCCChhhHHHHHHHHHhCCC
Q 040394 207 LDKNVVSWTSMIAGYVQNDC 226 (691)
Q Consensus 207 ~~~~~~~~~~li~~~~~~g~ 226 (691)
.+++...-...+.++...|+
T Consensus 138 ~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 138 FDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp TCSCHHHHHHHHHHHHTC--
T ss_pred hCCCHHHHHHHHHHHHhcCC
Confidence 33444444444445554444
No 306
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.40 E-value=89 Score=31.66 Aligned_cols=62 Identities=16% Similarity=0.127 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHchhhcCC-CCCh--hHHH-HHHHHHHhcCChHHHHHHHHhC
Q 040394 532 EVIFTTILSACSHTGMVGEGWKCFYSMCRDFKF-VPSM--KHYV-CMVDLLARAGRLEEALEFMENM 594 (691)
Q Consensus 532 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~-~p~~--~~~~-~li~~~~~~g~~~~A~~~~~~~ 594 (691)
...+|.+++-|...+.++.|..+..+.. -... .++. ..|. .+...+.-.+++.+|.+.+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~-fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE-YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC-SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc-CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3578889999999999999999999762 1000 1111 1222 3456677889999998887775
No 307
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=35.89 E-value=1.1e+02 Score=31.02 Aligned_cols=47 Identities=15% Similarity=0.109 Sum_probs=26.0
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHH
Q 040394 612 LYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRE 658 (691)
Q Consensus 612 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 658 (691)
-...++.|...|.++..+.|++...|..|+.+....|+.-+|.-.|-
T Consensus 164 Y~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~ 210 (497)
T 1ya0_A 164 YRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYC 210 (497)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHH
Confidence 33445556666666666666655566666555555555555544433
No 308
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=35.87 E-value=27 Score=23.14 Aligned_cols=48 Identities=19% Similarity=0.070 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCCCccCC
Q 040394 621 VMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRGLSKSP 669 (691)
Q Consensus 621 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 669 (691)
+.++.+.++.|+ ......-..+-...|+.+.|+..+-.|...+..+..
T Consensus 11 e~l~~L~emFP~-ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 11 EDLKAIQDMFPN-MDQEVIRSVLEAQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHHCSS-SCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHcCCCHHHHHHHHHcCcCCCCCCCC
Confidence 344445556777 333333333345667888888888777766555443
No 309
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=35.68 E-value=3e+02 Score=26.31 Aligned_cols=68 Identities=15% Similarity=0.155 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcccCC---HhHHHHHHHHHhcCCC--hHHHHHHHHHHHHCCCCCCHHHH
Q 040394 468 VGTALLNFYAKCGDAQSARMVFDAMREKN---TVTWSAMIGGYGMQGD--GGGSLALFSDMLNEEVQPNEVIF 535 (691)
Q Consensus 468 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~g~~p~~~~~ 535 (691)
....++.-|...|+.++|...++++..|. .....++..++-+.++ .+....++..+...|+-+.....
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~ 291 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 291 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 34677888889999999999999998763 3345555566655443 35577888888887766555443
No 310
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=35.51 E-value=2.8e+02 Score=25.94 Aligned_cols=55 Identities=7% Similarity=0.051 Sum_probs=39.4
Q ss_pred CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhC
Q 040394 595 PIEPDV--SLFGAFLHGCGLYSRFDLGEVMIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQR 663 (691)
Q Consensus 595 ~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 663 (691)
+..|.- -+....+..+.+.+++..|-.+.++++++.|+.. ..++|.+++..-.+.
T Consensus 200 ~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 200 KLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSM 256 (325)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTS
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcC
Confidence 555533 3667777788899999999999999999998622 234466666665543
No 311
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=35.22 E-value=3e+02 Score=26.09 Aligned_cols=26 Identities=15% Similarity=0.300 Sum_probs=17.5
Q ss_pred HHHHHHhHhcCChHHHHHHHhccCCC
Q 040394 184 TGLVDMYAKCRDIGSSRQVFDETLDK 209 (691)
Q Consensus 184 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 209 (691)
..++.-|...|+.++|.+-++++..|
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 34566666677777777777777655
No 312
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=32.79 E-value=1.3e+02 Score=21.89 Aligned_cols=61 Identities=8% Similarity=0.014 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHhHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhCCChh
Q 040394 165 GMKVHCEIVKVGGPDSFVLTGLVDMYAKCRDIGSSRQVFDETLDKNVVSWTSMIAGYVQNDCAQ 228 (691)
Q Consensus 165 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 228 (691)
...+++.+.+.|.-+..-+..+-. .....+.|.++++.+..++..+|..++.++.+.+...
T Consensus 24 v~~lld~L~~~~vlt~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~ 84 (94)
T 2p1h_A 24 TSYIMDHMISDGFLTISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 84 (94)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHH
Confidence 345566666665443333333322 2466777777777777777777787777777766533
No 313
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=32.67 E-value=3.1e+02 Score=25.54 Aligned_cols=28 Identities=11% Similarity=0.172 Sum_probs=23.9
Q ss_pred hhHHHHHHhcCCChHHHHHHhccCCCCC
Q 040394 83 NTKLVSMYGSFGHVKYARSVFDSMPNPD 110 (691)
Q Consensus 83 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 110 (691)
...++.-|...|+.++|...++++..|.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~ 33 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGE 33 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcc
Confidence 4567888999999999999999988765
No 314
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=31.85 E-value=3.5e+02 Score=25.87 Aligned_cols=72 Identities=17% Similarity=0.179 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHhcCC--chhHHHHHHHhhHCCCCCcHHHHHHHHH
Q 040394 284 VTALLDMYVKCGNIRDARSVFDELCSID---LVSWTAMIVGYTQSGY--PDKALKLFTDKKWADFFPNHVTIASVLS 355 (691)
Q Consensus 284 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 355 (691)
.+.++.-|...|+.++|.+.++++..|. ..+...+..++-+.++ .+...+++..+...|+-+.......+..
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~ 296 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYER 296 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 4567788889999999999999997664 2344455555554333 3457788888888877766655544433
No 315
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=30.62 E-value=1.9e+02 Score=23.18 Aligned_cols=48 Identities=13% Similarity=-0.059 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCchhHHHHHHHhhHCCCCCcHHHHHHHHHHHhcCCCh
Q 040394 316 TAMIVGYTQSGYPDKALKLFTDKKWADFFPNHVTIASVLSASAQLGNL 363 (691)
Q Consensus 316 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 363 (691)
..++..+...+..-.|.++++.+.+.+...+..|....|..+...|-+
T Consensus 25 ~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 25 HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 334444445555556666666666665555666655555555555443
No 316
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=30.48 E-value=1.4e+02 Score=25.83 Aligned_cols=27 Identities=15% Similarity=0.290 Sum_probs=16.8
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCCCHH
Q 040394 575 VDLLARAGRLEEALEFMENM-PIEPDVS 601 (691)
Q Consensus 575 i~~~~~~g~~~~A~~~~~~~-~~~p~~~ 601 (691)
+-.|.+.|.+++|.+++++. +..|+..
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~~~~s~~ 148 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMSKDPTTQ 148 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHSTTCGGGH
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCCch
Confidence 34566777777777777776 4333333
No 317
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=29.34 E-value=1.5e+02 Score=20.78 Aligned_cols=61 Identities=11% Similarity=0.095 Sum_probs=38.8
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHccC-ChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCC
Q 040394 235 NRMREGFVEGNQITLGSLVTACAKLR-ALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGN 296 (691)
Q Consensus 235 ~~m~~~~~~p~~~t~~~li~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 296 (691)
+.|.+.|++.+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....++.+.+.|-
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 34556677666544 34555555554 556777888888777666666666666676666664
No 318
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=29.23 E-value=4.4e+02 Score=26.23 Aligned_cols=104 Identities=13% Similarity=0.047 Sum_probs=58.8
Q ss_pred HHHhCCC-chhHHHHHHHHhHhcCChHHHHHHHHhCCCCCchhHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 040394 373 GIRLGLE-DYTVINALVDMYAKCHVIADARYIFETTSEKDVIAWNSIISGLDDNVSPDAVTLVSVISACASLGAVQVGSS 451 (691)
Q Consensus 373 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 451 (691)
+.+.|.+ ....|..-.+.+...|++++|.++-..-+. |+--+..|++.+-..-...|...--..
T Consensus 352 A~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~---------------giLRt~~Ti~rFk~vp~~pgq~splL~ 416 (494)
T 1bpo_A 352 AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK---------------GILRTPDTIRRFQSVPAQPGQTSPLLQ 416 (494)
T ss_dssp HHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG---------------GSSCSHHHHHHHTTSCCCTTSCCHHHH
T ss_pred HHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc---------------ccccCHHHHHHHhcCCCCCCCCCHHHH
Confidence 3344444 344455556666777777777776665544 344555555555444444455555566
Q ss_pred HHHHHHHcCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 040394 452 LHAYSTKQGLLSSNVYVGTALLNFYAKCGDAQSARMVFDAMR 493 (691)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 493 (691)
+|..+.+.| ..+..----+++.-...|+.+-.++++.+-+
T Consensus 417 YF~~Ll~~g--~Ln~~ESlEl~r~vL~q~r~~llekWl~e~K 456 (494)
T 1bpo_A 417 YFGILLDQG--QLNKYESLELCRPVLQQGRKQLLEKWLKEDK 456 (494)
T ss_dssp HHHHHHHHS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHTC
T ss_pred HHHHHhccC--ccchHHhhHHhHHHHhccHHHHHHHHHhcCC
Confidence 666666666 3444444445555556666666666665543
No 319
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=29.00 E-value=2.2e+02 Score=23.78 Aligned_cols=146 Identities=10% Similarity=0.002 Sum_probs=64.9
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCC---cchHHHHHHHHcccCChhHHHHHHHHHHHhCCC----ChhHHHHHHHHhHhc
Q 040394 121 YFLNDLYKDIVEFYKCMRKRLKEHD---NFVFSKVLKACCELRDIDEGMKVHCEIVKVGGP----DSFVLTGLVDMYAKC 193 (691)
Q Consensus 121 ~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~ 193 (691)
.+..|+.+....++..-. ..++ ..-. +.+...+..|+.+-+. .+.+.|.. +.... +-+...+..
T Consensus 12 A~~~g~~~~v~~ll~~~~---~~~~~~~~~g~-t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~-t~l~~A~~~ 82 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTT---YQVDEVDTEGN-TPLNIAVHNNDIEIAK----ALIDRGADINLQNSISD-SPYLYAGAQ 82 (201)
T ss_dssp HHHTTCHHHHHHHHTCTT---CCTTCCCTTSC-CHHHHHHHHTCHHHHH----HHHHTTCCTTCCCTTSC-CHHHHHHHT
T ss_pred HHHhccHHHHHHHHHcCC---CCCCCCCCCCC-CHHHHHHHcCCHHHHH----HHHHcCCCCCCCCCCCC-CHHHHHHHc
Confidence 355677766665554221 1222 2222 3344445566655444 44455532 22222 334455567
Q ss_pred CChHHHHHHHhccC-C---CChhhHHHHHHHHHhCCChhHHHHHHHHHHhCC-CCC---ChhhHHHHHHHHHccCChhhH
Q 040394 194 RDIGSSRQVFDETL-D---KNVVSWTSMIAGYVQNDCAQEGLVLFNRMREGF-VEG---NQITLGSLVTACAKLRALHQG 265 (691)
Q Consensus 194 g~~~~A~~~~~~~~-~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p---~~~t~~~li~~~~~~~~~~~a 265 (691)
|+.+-+..+++.-. . ++..-.+.| ...+..|+.+-+..+++ .| ..+ |..-.+.+..++........-
T Consensus 83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~ 157 (201)
T 3hra_A 83 GRTEILAYMLKHATPDLNKHNRYGGNAL-IPAAEKGHIDNVKLLLE----DGREDIDFQNDFGYTALIEAVGLREGNQLY 157 (201)
T ss_dssp TCHHHHHHHHHHSCCCTTCCCTTSCCSH-HHHHHTTCHHHHHHHHH----HCCCCTTCCCTTSCCHHHHHHHSSCCSHHH
T ss_pred CCHHHHHHHHhccCcccccccCCCCcHH-HHHHHcCCHHHHHHHHH----cCCCCcCCCCCCCCCHHHHHHHhccchhhH
Confidence 77777777774432 1 222222222 23345566544333333 33 222 222233333333332223333
Q ss_pred HHHHHHHHHHCCCCc
Q 040394 266 KWLHGYILKIGIEIN 280 (691)
Q Consensus 266 ~~~~~~~~~~g~~~~ 280 (691)
.++.+.+.+.|..++
T Consensus 158 ~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 158 QDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 556666666666554
No 320
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=28.88 E-value=1.9e+02 Score=26.34 Aligned_cols=181 Identities=8% Similarity=0.004 Sum_probs=85.2
Q ss_pred HHHHhcCCHHHHHHHHHhcccCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHhcccCCHHH
Q 040394 474 NFYAKCGDAQSARMVFDAMREKNTVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEV---IFTTILSACSHTGMVGE 550 (691)
Q Consensus 474 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~g~~~~ 550 (691)
...+..|+.+-+..+++.-..++...-.+.+...+..|+.+-+. .+.+.|..++.. ..+. +...+..|+.+-
T Consensus 36 ~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~----~Ll~~ga~~~~~d~~g~t~-L~~A~~~g~~~~ 110 (285)
T 3kea_A 36 YYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVK----ILLFSGLDDSQFDDKGNTA-LYYAVDSGNMQT 110 (285)
T ss_dssp HHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHH----HHHHTTCCTTCCCTTSCCH-HHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHH----HHHHCCCCCCCcCCCCCcH-HHHHHHcCCHHH
Confidence 34455677777777776533322111122334445566655443 344456555431 1222 233344566655
Q ss_pred HHHHHHHchhhcCCCCChh---HHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040394 551 GWKCFYSMCRDFKFVPSMK---HYVCMVDLLARAGRLEEALEFMENMPIEPDVSLFGAFLHGCGLYSRFDLGEVMIKKML 627 (691)
Q Consensus 551 A~~~~~~m~~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (691)
+..+++. |..++.. -+.+.+...+..|+.+-+.-+++.-....+...-.+.+...+..|+.+-+..+++.-.
T Consensus 111 v~~Ll~~-----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga 185 (285)
T 3kea_A 111 VKLFVKK-----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMT 185 (285)
T ss_dssp HHHHHHH-----CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhc-----CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCC
Confidence 5555443 3334321 1123444455667766655555554322232122333444557788888777777755
Q ss_pred hcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCCCccC
Q 040394 628 ELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRGLSKS 668 (691)
Q Consensus 628 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~ 668 (691)
..+..+..-.......-...|+ .++.+.+++.|..+.
T Consensus 186 d~n~~~~~g~t~~L~~A~~~~~----~~~v~~Ll~~gad~~ 222 (285)
T 3kea_A 186 STNTNNSLLFIPDIKLAIDNKD----IEMLQALFKYDINIY 222 (285)
T ss_dssp HTCTTCCCBCCTTHHHHHHHTC----HHHHHHHTTSCBCST
T ss_pred CCCcccCCCCChHHHHHHHcCC----HHHHHHHHHcCCCCC
Confidence 5443322111110011123344 345556666666443
No 321
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=27.90 E-value=1.7e+02 Score=27.75 Aligned_cols=17 Identities=6% Similarity=0.239 Sum_probs=10.0
Q ss_pred HHHhcCCHHHHHHHHHh
Q 040394 290 MYVKCGNIRDARSVFDE 306 (691)
Q Consensus 290 ~~~~~g~~~~A~~~~~~ 306 (691)
..++.|+.+-+.-+++.
T Consensus 250 ~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 250 LSVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHHHTCCHHHHHHHHHH
T ss_pred HHHHhChHHHHHHHHHc
Confidence 34455666666666655
No 322
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=27.79 E-value=1.6e+02 Score=20.62 Aligned_cols=60 Identities=8% Similarity=0.028 Sum_probs=36.3
Q ss_pred HHHHHcCCCCCcchHHHHHHHHcccC-ChhHHHHHHHHHHHhCCC-ChhHHHHHHHHhHhcCC
Q 040394 135 KCMRKRLKEHDNFVFSKVLKACCELR-DIDEGMKVHCEIVKVGGP-DSFVLTGLVDMYAKCRD 195 (691)
Q Consensus 135 ~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 195 (691)
+.+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.++. +..+-...+..+...|-
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 34556676666543 44556665554 556677888888777655 55555555556655553
No 323
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=26.93 E-value=1.8e+02 Score=25.21 Aligned_cols=27 Identities=4% Similarity=-0.154 Sum_probs=16.5
Q ss_pred HHHHHHccCChhhHHHHHHHHHHHCCC
Q 040394 252 LVTACAKLRALHQGKWLHGYILKIGIE 278 (691)
Q Consensus 252 li~~~~~~~~~~~a~~~~~~~~~~g~~ 278 (691)
.+...+..|+.+.+..+++.+.+.|..
T Consensus 157 ~L~~A~~~~~~~~~~~i~~~Ll~~g~~ 183 (232)
T 2rfa_A 157 VLHILILQPNKTFACQMYNLLLSYDGG 183 (232)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCc
Confidence 344455666666666666666666643
No 324
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=26.28 E-value=3e+02 Score=26.90 Aligned_cols=178 Identities=12% Similarity=0.085 Sum_probs=82.1
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCC---HhHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHhcccC
Q 040394 473 LNFYAKCGDAQSARMVFDAMREKN---TVTWSAMIGGYGMQGDGGGSLALFSDMLNEEVQPNEV---IFTTILSACSHTG 546 (691)
Q Consensus 473 ~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~g 546 (691)
+...+..|+.+-+..+++.-..++ ...++. +...+..|+.+- ++.+.+.|..++.. ..+. +...+..|
T Consensus 183 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~----~~~Ll~~g~~~~~~~~~g~t~-L~~A~~~g 256 (437)
T 1n11_A 183 LHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTP-LHIAAKQNQVEV----ARSLLQYGGSANAESVQGVTP-LHLAAQEG 256 (437)
T ss_dssp HHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCH-HHHHHHTTCHHH----HHHHHHTTCCTTCCCTTCCCH-HHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCH-HHHHHHcCCHHH----HHHHHHcCCCCCCCCCCCCCH-HHHHHHCC
Confidence 344556777776666665443332 222233 333445666544 44445556554432 1222 33334556
Q ss_pred CHHHHHHHHHHchhhcCCCCChh--HHHHHHHHHHhcCChHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHH
Q 040394 547 MVGEGWKCFYSMCRDFKFVPSMK--HYVCMVDLLARAGRLEEALEFMENMPIEP---DVSLFGAFLHGCGLYSRFDLGEV 621 (691)
Q Consensus 547 ~~~~A~~~~~~m~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~ 621 (691)
..+-...+++ .+..++.. .-.+.+...++.|+.+-+.-+++.- ..+ +..-.. .+...+..|+.+-+..
T Consensus 257 ~~~~v~~Ll~-----~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t-~L~~A~~~g~~~~v~~ 329 (437)
T 1n11_A 257 HAEMVALLLS-----KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG-VMVDATTRMGYT-PLHVASHYGNIKLVKF 329 (437)
T ss_dssp CHHHHHHHHT-----TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCCCSSCCC-HHHHHHHSSCSHHHHH
T ss_pred CHHHHHHHHh-----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC-ccCCCCCCCCCC-HHHHHHHcCcHHHHHH
Confidence 6655444433 23333311 1112334445677777666565543 222 211222 2334456788877666
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHhCCCcHHHHHHHHHHHhCCCccC
Q 040394 622 MIKKMLELHPDKACYYVLVSNLYASDGRWIRVNQVRELMKQRGLSKS 668 (691)
Q Consensus 622 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~ 668 (691)
+++.-...+..+..-...| ..-...|+. ++.+.+++.|..+.
T Consensus 330 Ll~~gad~n~~~~~g~t~L-~~A~~~g~~----~iv~~Ll~~ga~~~ 371 (437)
T 1n11_A 330 LLQHQADVNAKTKLGYSPL-HQAAQQGHT----DIVTLLLKNGASPN 371 (437)
T ss_dssp HHHTTCCTTCCCTTSCCHH-HHHHHTTCH----HHHHHHHHTTCCSC
T ss_pred HHhcCCCCCCCCCCCCCHH-HHHHHCChH----HHHHHHHHCcCCCC
Confidence 6655332222222112222 222455654 45566667776543
No 325
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=25.98 E-value=2.4e+02 Score=26.27 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=9.7
Q ss_pred HHhcCCHHHHHHHHHh
Q 040394 291 YVKCGNIRDARSVFDE 306 (691)
Q Consensus 291 ~~~~g~~~~A~~~~~~ 306 (691)
.++.|+.+-+..++++
T Consensus 175 A~~~g~~~~v~~LL~~ 190 (337)
T 4g8k_A 175 AAEKGHVEVLKILLDE 190 (337)
T ss_dssp HHHHTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHhc
Confidence 3456677666666654
No 326
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=25.92 E-value=2e+02 Score=23.12 Aligned_cols=61 Identities=10% Similarity=-0.025 Sum_probs=32.1
Q ss_pred HHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCH
Q 040394 236 RMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNI 297 (691)
Q Consensus 236 ~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 297 (691)
.+.+.|++++..- ..++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 12 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 12 TLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 3445555544332 233334444445556666666666655555555555555666666543
No 327
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=25.82 E-value=1.4e+02 Score=26.64 Aligned_cols=90 Identities=9% Similarity=-0.002 Sum_probs=49.2
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCc-------chHHHHHHHHccc---CChhHHHHHHHHHHHhCCCC--------
Q 040394 118 IRWYFLNDLYKDIVEFYKCMRKRLKEHDN-------FVFSKVLKACCEL---RDIDEGMKVHCEIVKVGGPD-------- 179 (691)
Q Consensus 118 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~-------- 179 (691)
+...++.|+.+.+..+++.+.+.|..++. .-. +.+...+.. |+.+-+..+++.-...+..+
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~-t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 84 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGK-TCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCT 84 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTB-CHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCC-CHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccc
Confidence 34446677888777777777777665543 222 233333344 77777777766544432111
Q ss_pred -h-hHHHHHHHHhHhcCChHHHHHHHhccCC
Q 040394 180 -S-FVLTGLVDMYAKCRDIGSSRQVFDETLD 208 (691)
Q Consensus 180 -~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 208 (691)
. ..-.+.+...+..|+.+-+..+++.-..
T Consensus 85 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~ 115 (256)
T 2etb_A 85 DEFYQGHSALHIAIEKRSLQCVKLLVENGAD 115 (256)
T ss_dssp STTTTTCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred cccccCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 0 1122334445566777777766665433
No 328
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=25.65 E-value=4.3e+02 Score=24.94 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHh
Q 040394 284 VTALLDMYVKCGNIRDARSVFDE 306 (691)
Q Consensus 284 ~~~li~~~~~~g~~~~A~~~~~~ 306 (691)
...++..+++....+.+.++|.+
T Consensus 144 l~~vl~~l~~~~g~~~l~~~~~~ 166 (339)
T 1ug3_A 144 LLEILGLLCKSMGPKKVGTLWRE 166 (339)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHH
Confidence 33444445555555555555554
No 329
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=25.11 E-value=4.2e+02 Score=24.59 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=21.3
Q ss_pred HHHHHHHHHHCCCCchHH--HHHHHHHHHhcCCHHHHHHHHHh
Q 040394 266 KWLHGYILKIGIEINSHL--VTALLDMYVKCGNIRDARSVFDE 306 (691)
Q Consensus 266 ~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~ 306 (691)
..+.+.+.+.|..++... -.+-+...+..|..+....+++.
T Consensus 219 ~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~ 261 (337)
T 4g8k_A 219 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ 261 (337)
T ss_dssp HHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh
Confidence 344455566666554321 11233445567777776666653
No 330
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=24.71 E-value=3.4e+02 Score=23.41 Aligned_cols=20 Identities=5% Similarity=0.069 Sum_probs=12.7
Q ss_pred HHHHHhcCCChHHHHHHhcc
Q 040394 86 LVSMYGSFGHVKYARSVFDS 105 (691)
Q Consensus 86 l~~~~~~~g~~~~A~~~~~~ 105 (691)
.+...+..|+.+-+..+++.
T Consensus 47 ~L~~A~~~~~~~~v~~Ll~~ 66 (237)
T 3b7b_A 47 PLMEAAENNHLEAVKYLIKA 66 (237)
T ss_dssp HHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHhC
Confidence 34445566777777777665
No 331
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=24.70 E-value=3.1e+02 Score=23.57 Aligned_cols=12 Identities=8% Similarity=0.080 Sum_probs=4.8
Q ss_pred cCCChHHHHHHh
Q 040394 92 SFGHVKYARSVF 103 (691)
Q Consensus 92 ~~g~~~~A~~~~ 103 (691)
+.|+++....++
T Consensus 15 ~~g~~~~v~~ll 26 (231)
T 3aji_A 15 YSGKLDELKERI 26 (231)
T ss_dssp HHTCHHHHHHHH
T ss_pred HhCCHHHHHHHH
Confidence 334444444433
No 332
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=23.81 E-value=2.9e+02 Score=22.29 Aligned_cols=49 Identities=8% Similarity=-0.012 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHhhHCCCCCcHHHHHHHHHHHhcCCCh
Q 040394 315 WTAMIVGYTQSGYPDKALKLFTDKKWADFFPNHVTIASVLSASAQLGNL 363 (691)
Q Consensus 315 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 363 (691)
-..++..+...+..-.|.++++.+.+.+...+..|.-..|..+...|-+
T Consensus 29 R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 29 REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 3344455555555666677777766665555666665555555555543
No 333
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=23.52 E-value=1.5e+02 Score=28.13 Aligned_cols=218 Identities=14% Similarity=0.045 Sum_probs=106.4
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCchh--HHHHHHHHHHhcCCHHHHHHHHHhcccCCH-hHHHHH
Q 040394 427 SPDAVTLVSVISACASLGAVQVGSSLHAYSTKQGLLSSNVY--VGTALLNFYAKCGDAQSARMVFDAMREKNT-VTWSAM 503 (691)
Q Consensus 427 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~l 503 (691)
..|..-.+.|..+ +..|+.+.+..+++. |. .++.. .-...+...+..|+.+-+..+++.-...+. ..++ .
T Consensus 15 ~~d~~g~t~L~~A-a~~g~~~~v~~Ll~~----g~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t-~ 87 (364)
T 3ljn_A 15 KSDDENMEKIHVA-ARKGQTDEVRRLIET----GV-SPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQK-P 87 (364)
T ss_dssp -CCHHHHHHHHHH-HHHTCHHHHHHHHHT----TC-CTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBC-H
T ss_pred ccCCCCCCHHHHH-HHcCCHHHHHHHHHc----CC-CccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCC-H
Confidence 3455555555444 566787766666643 32 22211 111234445667888888887776554333 2222 3
Q ss_pred HHHHhcCCChHHHHHHHHHHHHCCCCCCH--------------------HHHHHHHHHhcccC--CHHHHHHHHHHchhh
Q 040394 504 IGGYGMQGDGGGSLALFSDMLNEEVQPNE--------------------VIFTTILSACSHTG--MVGEGWKCFYSMCRD 561 (691)
Q Consensus 504 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~--------------------~~~~~ll~~~~~~g--~~~~A~~~~~~m~~~ 561 (691)
+...+..|+.+-+..+++.....|..|+. ...+.+.. .+..| +.+-+..+++.
T Consensus 88 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~-A~~~g~~~~~~v~~Ll~~---- 162 (364)
T 3ljn_A 88 IHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHW-CVGLGPEYLEMIKILVQL---- 162 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHH-HHHSCGGGHHHHHHHHHH----
T ss_pred HHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHH-HHHcCCchHHHHHHHHHc----
Confidence 34445678887777777765555555443 11223333 33445 55544444432
Q ss_pred cCCCCChhH--HHHHHHHHHhcCChHHHHHHHHhCCC----CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 040394 562 FKFVPSMKH--YVCMVDLLARAGRLEEALEFMENMPI----EP---DVSLFGAFLHGCGLYSRFDLGEVMIKKMLELHPD 632 (691)
Q Consensus 562 ~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~----~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 632 (691)
|..++... -.+.+...+..|+.+-+..+++.-.. .+ |..-+.. +...+..|+.+-+..+++.-...+..
T Consensus 163 -ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~gad~~~~ 240 (364)
T 3ljn_A 163 -GASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSH-LHWAILINWEDVAMRFVEMGIDVNME 240 (364)
T ss_dssp -TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCT-THHHHTTTCHHHHHHHHTTTCCTTCC
T ss_pred -CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcH-HHHHHHcCCHHHHHHHHHcCCCCCCC
Confidence 45544221 11233445577887777777765311 01 1122222 23344678877666666543222222
Q ss_pred CchhHHHHHHHHHhCCCcHHHHHHHHH
Q 040394 633 KACYYVLVSNLYASDGRWIRVNQVREL 659 (691)
Q Consensus 633 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 659 (691)
+..-...| ..-+..|+.+-+.-+++.
T Consensus 241 d~~g~tpL-~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 241 DNEHTVPL-YLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp CTTSCCHH-HHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCHH-HHHHHhChHHHHHHHHHc
Confidence 22222222 223455666555544443
No 334
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=22.92 E-value=1.1e+02 Score=22.55 Aligned_cols=38 Identities=11% Similarity=0.087 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHhcccCCHhHHHHHHHHHhcCCChHHHH
Q 040394 480 GDAQSARMVFDAMREKNTVTWSAMIGGYGMQGDGGGSL 517 (691)
Q Consensus 480 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 517 (691)
...+.|.++++.+..++...|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788888888888888888888888887767665554
No 335
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=22.02 E-value=2.6e+02 Score=22.58 Aligned_cols=62 Identities=10% Similarity=0.013 Sum_probs=35.8
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCH
Q 040394 235 NRMREGFVEGNQITLGSLVTACAKLRALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNI 297 (691)
Q Consensus 235 ~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 297 (691)
+.+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 16 ~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 3355566654433 2334445555555667777777777776666666655666667776654
No 336
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=21.54 E-value=1.9e+02 Score=21.37 Aligned_cols=27 Identities=11% Similarity=0.257 Sum_probs=13.7
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 040394 516 SLALFSDMLNEEVQPNEVIFTTILSAC 542 (691)
Q Consensus 516 A~~~~~~m~~~g~~p~~~~~~~ll~~~ 542 (691)
|.++.+++...|+.|+..+...++..|
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC 54 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELC 54 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 444555555555555555544444444
No 337
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=21.02 E-value=3.3e+02 Score=21.93 Aligned_cols=62 Identities=11% Similarity=0.132 Sum_probs=40.0
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHccC-ChhhHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCH
Q 040394 235 NRMREGFVEGNQITLGSLVTACAKLR-ALHQGKWLHGYILKIGIEINSHLVTALLDMYVKCGNI 297 (691)
Q Consensus 235 ~~m~~~~~~p~~~t~~~li~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 297 (691)
+.+.+.|++++..- ..++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 6 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 34566777766543 33455555555 6677888888888877666666655566666666643
No 338
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=20.85 E-value=2.6e+02 Score=23.02 Aligned_cols=46 Identities=15% Similarity=0.081 Sum_probs=23.8
Q ss_pred HHHHHHHhcCCchhHHHHHHHhhHC--CCCCcHHHHHHHHHHHhcCCC
Q 040394 317 AMIVGYTQSGYPDKALKLFTDKKWA--DFFPNHVTIASVLSASAQLGN 362 (691)
Q Consensus 317 ~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~ 362 (691)
.++..+...+..-.|.++++.+.+. +...+..|.-.-|..+...|-
T Consensus 37 ~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 37 VLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 3444444445555566666666555 444555555444444444443
No 339
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=20.84 E-value=5.8e+02 Score=24.72 Aligned_cols=89 Identities=10% Similarity=0.042 Sum_probs=51.1
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCchhHHHH
Q 040394 565 VPSMKHYVCMVDLLARAGRLEEALEFMENM--PIEPDVSLFGAFLHGCGLYSRFDLGEVMIKKMLE--LHPDKACYYVLV 640 (691)
Q Consensus 565 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l 640 (691)
.|....+..++.+| +.+++.+..++++.. .+..|......+-..+ ..+.++.+. ..|-.......+
T Consensus 253 ~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~---------~~Ir~~~L~~i~~pYsrIsl~~i 322 (394)
T 3txn_A 253 GRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLY---------DTMLEQNLCRIIEPYSRVQVAHV 322 (394)
T ss_dssp SHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHH---------HHHHHHHHHHHHTTCSEEEHHHH
T ss_pred CccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHH---------HHHHHHHHHHHhHhhceeeHHHH
Confidence 45555555565554 456787777777776 2444554321111111 111111111 457667777777
Q ss_pred HHHHHhCCCcHHHHHHHHHHHhCCC
Q 040394 641 SNLYASDGRWIRVNQVRELMKQRGL 665 (691)
Q Consensus 641 ~~~~~~~g~~~~A~~~~~~~~~~g~ 665 (691)
+..+.- ..+++...+-+|+..|.
T Consensus 323 A~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 323 AESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp HHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred HHHHCc--CHHHHHHHHHHHHHCCC
Confidence 776643 67889999999988775
No 340
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=20.72 E-value=4e+02 Score=22.77 Aligned_cols=19 Identities=16% Similarity=-0.071 Sum_probs=9.6
Q ss_pred HHHHhccCcHHHHHHHHHH
Q 040394 437 ISACASLGAVQVGSSLHAY 455 (691)
Q Consensus 437 l~~~~~~~~~~~a~~~~~~ 455 (691)
+...+..|+.+....++..
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3444455555555555543
No 341
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.61 E-value=2.7e+02 Score=27.08 Aligned_cols=23 Identities=4% Similarity=-0.019 Sum_probs=11.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 040394 605 AFLHGCGLYSRFDLGEVMIKKML 627 (691)
Q Consensus 605 ~l~~~~~~~g~~~~A~~~~~~~~ 627 (691)
.+...|...|+.+.|...++++.
T Consensus 132 ~i~~~yl~~~d~~~a~~~l~~~~ 154 (393)
T 4b4t_O 132 EIARTYLLKNDLVKARDLLDDLE 154 (393)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Confidence 33344445555555555555544
No 342
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=20.51 E-value=1e+02 Score=20.39 Aligned_cols=33 Identities=12% Similarity=0.151 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHcCCCCCcchHHHHHHHH-ccc
Q 040394 127 YKDIVEFYKCMRKRLKEHDNFVFSKVLKAC-CEL 159 (691)
Q Consensus 127 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~ 159 (691)
.++|...|.+|++..-.++..||...++.+ ++.
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~D 35 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRD 35 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCC
Confidence 357777777777665555667788888777 543
No 343
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=20.50 E-value=4.1e+02 Score=22.81 Aligned_cols=65 Identities=6% Similarity=0.023 Sum_probs=40.4
Q ss_pred hHHHHHHHH---HhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHcccCC-----hhHHHHHHHHHHHhCCC
Q 040394 113 SFQVMIRWY---FLNDLYKDIVEFYKCMRKRLKEHDNFVFSKVLKACCELRD-----IDEGMKVHCEIVKVGGP 178 (691)
Q Consensus 113 ~~~~ll~~~---~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~ 178 (691)
...-+|+++ .|..+++.|+-.+-+|++.| -|.-..=..++-+.-.-|. +..|...++.....|.|
T Consensus 13 ~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 13 AHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 444556666 46789999999999999998 4433333333444433332 33456666667777765
Done!