BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040402
(567 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W2Z|A Chain A, Psao And Xenon
pdb|1W2Z|B Chain B, Psao And Xenon
pdb|1W2Z|C Chain C, Psao And Xenon
pdb|1W2Z|D Chain D, Psao And Xenon
Length = 649
Score = 559 bits (1441), Expect = e-159, Method: Compositional matrix adjust.
Identities = 295/645 (45%), Positives = 395/645 (61%), Gaps = 96/645 (14%)
Query: 4 CHRPLDSLSPAEFTLVQTIVKTSYP--SNNLSFHYVGLDEPDKAVVYSWLSN-SKIKIPR 60
PLD L+ EF VQTIV+ YP +N L+FHY+GLD+P+K V + ++ + + IPR
Sbjct: 6 VQHPLDPLTKEEFLAVQTIVQNKYPISNNRLAFHYIGLDDPEKDHVLRYETHPTLVSIPR 65
Query: 61 R------------AIVIDLSRRSIVSDKVYTGHGFPLLTLEEQRTGAAPVLAYEPFKASV 108
+ I+I+L RSIVSD ++ G+GFP+L+++EQ L Y PF SV
Sbjct: 66 KIFVVAIINSQTHEILINLRIRSIVSDNIHNGYGFPILSVDEQSLAIKLPLKYPPFIDSV 125
Query: 109 KKRGLNISDV-------------ESKRELKFPCFYTDQGTVNMFLRPIEGITIVVDIEEM 155
KKRGLN+S++ ++ R ++ CF + TVN+++RPI GITIV D++ M
Sbjct: 126 KKRGLNLSEIVCSSFTMGWFGEEKNVRTVRLDCF-MKESTVNIYVRPITGITIVADLDLM 184
Query: 156 KVTQYNDREVAPIPKSEPTEYRWSKLKPPFGPRLNSVTT-LPTGPGFKIDGNTVKWANWV 214
K+ +Y+DR++ +P +E TEY+ SK PPFGP+ +S+T+ P GPGF+I+G++V WANW
Sbjct: 185 KIVEYHDRDIEAVPTAENTEYQVSKQSPPFGPKQHSLTSHQPQGPGFQINGHSVSWANWK 244
Query: 215 FNVGFDARVGTIISTASIYDVDMHKYRR-------------------------------- 242
F++GFD R G +IS ASIYD++ HK RR
Sbjct: 245 FHIGFDVRAGIVISLASIYDLEKHKSRRVLYKGYISELFVPYQDPTEEFYFKTFFDSGEF 304
Query: 243 ----------PLKDCPPNAVFIDGYFTSQDGAPIQTPNAICIFERHTGDVMWRHTEAEMP 292
P +DCPP+A FID Y S +G PI NAIC+FE++ G++MWRHTE +P
Sbjct: 305 GFGLSTVSLIPNRDCPPHAQFIDTYVHSANGTPILLKNAICVFEQY-GNIMWRHTENGIP 363
Query: 293 GD-VREVRPEVSLVVRMVATVGNYDYVIDWEFKPSGSIKLG------CKVRPVEYTHIDQ 345
+ + E R EV+L+VR + TVGN D VIDWEFK SGSIK +++ H D+
Sbjct: 364 NESIEESRTEVNLIVRTIVTVGNXDNVIDWEFKASGSIKPSIALSGILEIKGTNIKHKDE 423
Query: 346 IKEDQQGKLVADNTIGVNHDHFLNYYLDLDIDGYANSFEKTKL----------------T 389
IKED GKLV+ N+IG+ HDHF YYLD DIDG NSFEKT L T
Sbjct: 424 IKEDLHGKLVSANSIGIYHDHFYIYYLDFDIDGTHNSFEKTSLKTVRIKDGSSKRKSYWT 483
Query: 390 VEKETAKTEFEARLKLDTKPMEFAMVNPNKKTKIGHXXXXXXXXXXXXXXXXTDDDYPQI 449
E +TAKTE +A++ + P E +VNPN KT +G+ T+DDYPQI
Sbjct: 484 TETQTAKTESDAKITIGLAPAELVVVNPNIKTAVGNEVGYRLIPAIPAHPLLTEDDYPQI 543
Query: 450 RAGFTDYNIWVTPYNKSEKYSGGNYVDQSHGDDTLLQWTDGNREIENKDIVLWYTMGIHH 509
R FT+YN+WVT YN++EK++GG YVD S GDDTL WT NREI NKDIV+W+ +GIHH
Sbjct: 544 RGAFTNYNVWVTAYNRTEKWAGGLYVDHSRGDDTLAVWTKQNREIVNKDIVMWHVVGIHH 603
Query: 510 APCQEDFPVMPTVSGGFELRPTNFFEYNPVLKVIPPKHVQWPNCT 554
P QEDFP+MP +S FELRPTNFFE NPVLK + P+ V WP C+
Sbjct: 604 VPAQEDFPIMPLLSTSFELRPTNFFERNPVLKTLSPRDVAWPGCS 648
>pdb|1KSI|A Chain A, Crystal Structure Of A Eukaryotic (Pea Seedling)
Copper-Containing Amine Oxidase At 2.2a Resolution
pdb|1KSI|B Chain B, Crystal Structure Of A Eukaryotic (Pea Seedling)
Copper-Containing Amine Oxidase At 2.2a Resolution
Length = 642
Score = 558 bits (1438), Expect = e-159, Method: Compositional matrix adjust.
Identities = 295/644 (45%), Positives = 394/644 (61%), Gaps = 96/644 (14%)
Query: 4 CHRPLDSLSPAEFTLVQTIVKTSYP--SNNLSFHYVGLDEPDKAVVYSWLSN-SKIKIPR 60
PLD L+ EF VQTIV+ YP +N L+FHY+GLD+P+K V + ++ + + IPR
Sbjct: 1 VQHPLDPLTKEEFLAVQTIVQNKYPISNNRLAFHYIGLDDPEKDHVLRYETHPTLVSIPR 60
Query: 61 R------------AIVIDLSRRSIVSDKVYTGHGFPLLTLEEQRTGAAPVLAYEPFKASV 108
+ I+I+L RSIVSD ++ G+GFP+L+++EQ L Y PF SV
Sbjct: 61 KIFVVAIINSQTHEILINLRIRSIVSDNIHNGYGFPILSVDEQSLAIKLPLKYPPFIDSV 120
Query: 109 KKRGLNISDV-------------ESKRELKFPCFYTDQGTVNMFLRPIEGITIVVDIEEM 155
KKRGLN+S++ ++ R ++ CF + TVN+++RPI GITIV D++ M
Sbjct: 121 KKRGLNLSEIVCSSFTMGWFGEEKNVRTVRLDCF-MKESTVNIYVRPITGITIVADLDLM 179
Query: 156 KVTQYNDREVAPIPKSEPTEYRWSKLKPPFGPRLNSVTT-LPTGPGFKIDGNTVKWANWV 214
K+ +Y+DR++ +P +E TEY+ SK PPFGP+ +S+T+ P GPGF+I+G++V WANW
Sbjct: 180 KIVEYHDRDIEAVPTAENTEYQVSKQSPPFGPKQHSLTSHQPQGPGFQINGHSVSWANWK 239
Query: 215 FNVGFDARVGTIISTASIYDVDMHKYRR-------------------------------- 242
F++GFD R G +IS ASIYD++ HK RR
Sbjct: 240 FHIGFDVRAGIVISLASIYDLEKHKSRRVLYKGYISELFVPYQDPTEEFYFKTFFDSGEF 299
Query: 243 ----------PLKDCPPNAVFIDGYFTSQDGAPIQTPNAICIFERHTGDVMWRHTEAEMP 292
P +DCPP+A FID Y S +G PI NAIC+FE++ G++MWRHTE +P
Sbjct: 300 GFGLSTVSLIPNRDCPPHAQFIDTYVHSANGTPILLKNAICVFEQY-GNIMWRHTENGIP 358
Query: 293 GD-VREVRPEVSLVVRMVATVGNYDYVIDWEFKPSGSIKLG------CKVRPVEYTHIDQ 345
+ + E R EV+L+VR + TVGN D VIDWEFK SGSIK +++ H D+
Sbjct: 359 NESIEESRTEVNLIVRTIVTVGNXDNVIDWEFKASGSIKPSIALSGILEIKGTNIKHKDE 418
Query: 346 IKEDQQGKLVADNTIGVNHDHFLNYYLDLDIDGYANSFEKTKL----------------T 389
IKED GKLV+ N+IG+ HDHF YYLD DIDG NSFEKT L T
Sbjct: 419 IKEDLHGKLVSANSIGIYHDHFYIYYLDFDIDGTHNSFEKTSLKTVRIKDGSSKRKSYWT 478
Query: 390 VEKETAKTEFEARLKLDTKPMEFAMVNPNKKTKIGHXXXXXXXXXXXXXXXXTDDDYPQI 449
E +TAKTE +A++ + P E +VNPN KT +G+ T+DDYPQI
Sbjct: 479 TETQTAKTESDAKITIGLAPAELVVVNPNIKTAVGNEVGYRLIPAIPAHPLLTEDDYPQI 538
Query: 450 RAGFTDYNIWVTPYNKSEKYSGGNYVDQSHGDDTLLQWTDGNREIENKDIVLWYTMGIHH 509
R FT+YN+WVT YN++EK++GG YVD S GDDTL WT NREI NKDIV+W+ +GIHH
Sbjct: 539 RGAFTNYNVWVTAYNRTEKWAGGLYVDHSRGDDTLAVWTKQNREIVNKDIVMWHVVGIHH 598
Query: 510 APCQEDFPVMPTVSGGFELRPTNFFEYNPVLKVIPPKHVQWPNC 553
P QEDFP+MP +S FELRPTNFFE NPVLK + P+ V WP C
Sbjct: 599 VPAQEDFPIMPLLSTSFELRPTNFFERNPVLKTLSPRDVAWPGC 642
>pdb|2WGQ|A Chain A, Zinc Substituted E Coli Copper Amine Oxidase, A Model For
The Precursor For 2,4,5-Trihydroxyphenylalaninequinone
Formation
pdb|2WGQ|B Chain B, Zinc Substituted E Coli Copper Amine Oxidase, A Model For
The Precursor For 2,4,5-Trihydroxyphenylalaninequinone
Formation
Length = 727
Score = 209 bits (533), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 178/640 (27%), Positives = 271/640 (42%), Gaps = 114/640 (17%)
Query: 7 PLDSLSPAEFTLVQTIVKTSYPSN-NLSFHYVGLDEPDKAVVYSW-LSNSKIKIPRRAIV 64
PL++L+ E IVK S N F + L PDK V+++ L N + PR+A V
Sbjct: 95 PLNALTADEIKQAVEIVKASADFKPNTRFTEISLLPPDKEAVWAFALENKPVDQPRKADV 154
Query: 65 IDLSRRSIVS-------------DKVYTGHGFPLLTLEEQRTGAAPVLAYEPFKASVKKR 111
I L + I+ + HG ++ L++ + + E F A+VKKR
Sbjct: 155 IMLDGKHIIEAVVDLQNNKLLSWQPIKDAHG--MVLLDDFASVQNIINNSEEFAAAVKKR 212
Query: 112 G-----------LNISDVESKRELKFPC------FYTDQGTVNMFLRPIEGITIVVDIEE 154
G L + + K LK Y D G N + PIE + VVD+E+
Sbjct: 213 GITDAKKVITTPLTVGYFDGKDGLKQDARLLKVISYLDVGDGNYWAHPIENLVAVVDLEQ 272
Query: 155 MKVTQYNDREVAPIP-KSEPTEYRWSKLKPPFGPRLNSVTTLPTGPGFKIDGNTVKWANW 213
K+ + + V P+P + P + R ++ P P P G + I G+ + W NW
Sbjct: 273 KKIVKIEEGPVVPVPMTARPFDGR-DRVAPAVKPMQ---IIEPEGKNYTITGDMIHWRNW 328
Query: 214 VFNVGFDARVGTIISTAS----------IY---------------------------DVD 236
F++ ++RVG +IST + +Y D
Sbjct: 329 DFHLSMNSRVGPMISTVTYNDNGTKRKVMYEGSLGGMIVPYGDPDIGWYFKAYLDSGDYG 388
Query: 237 MHKYRRPL---KDCPPNAVFIDGYFTSQDGAPIQTPNAICIFERHTGDVMWRHTEAEMPG 293
M P+ KD P NAV ++ G P++ P AI +FER+ G ++H E P
Sbjct: 389 MGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERYAGP-EYKHQEMGQPN 447
Query: 294 DVREVRPEVSLVVRMVATVGNYDYVIDWEFKPSGSIKLGCKVRPVEYT--------HIDQ 345
E R LVVR ++TVGNYDY+ DW F +G+I + +E H +
Sbjct: 448 VSTERR---ELVVRWISTVGNYDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTMHDET 504
Query: 346 IKEDQQ-GKLVADNTIGVNHDHFLNYYLDLDIDGYANSFEKTKLTVEKETAK-------- 396
K+D + G L+ N +G H H N+ LDLD+DG NS V+ TA
Sbjct: 505 AKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMDPVVKPNTAGGPRTSTMQ 564
Query: 397 -------TEFEARLKLDTKPMEFAMVNPNKKTKIGHXXX------XXXXXXXXXXXXXTD 443
E +A K D + + NPNK+ ++G+
Sbjct: 565 VNQYNIGNEQDAAQKFDPGTIRL-LSNPNKENRMGNPVSYQIIPYAGGTHPVAKGAQFAP 623
Query: 444 DDYPQIRAGFTDYNIWVTPYNKSEKYSGGNYVDQSHGDDTLLQWTDGNREIENKDIVLWY 503
D++ R F D +WVT Y+ E++ G Y ++S D L Q++ N ++N D V+W
Sbjct: 624 DEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNTDAVVWM 683
Query: 504 TMGIHHAPCQEDFPVMPTVSGGFELRPTNFFEYNPVLKVI 543
T G H E++P+MPT L+P NFF+ P L +
Sbjct: 684 TTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTLGAL 723
>pdb|1QAL|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
pdb|1QAL|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
Length = 721
Score = 207 bits (527), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 177/640 (27%), Positives = 270/640 (42%), Gaps = 114/640 (17%)
Query: 7 PLDSLSPAEFTLVQTIVKTSYPSN-NLSFHYVGLDEPDKAVVYSW-LSNSKIKIPRRAIV 64
PL++L+ E IVK S N F + L PDK V+++ L N + PR+A V
Sbjct: 90 PLNALTADEIKQAVEIVKASADFKPNTRFTEISLLPPDKEAVWAFALENKPVDQPRKADV 149
Query: 65 IDLSRRSIVS-------------DKVYTGHGFPLLTLEEQRTGAAPVLAYEPFKASVKKR 111
I L + I+ + HG ++ L++ + + E F A+VKKR
Sbjct: 150 IMLDGKHIIEAVVDLQNNKLLSWQPIKDAHG--MVLLDDFASVQNIINNSEEFAAAVKKR 207
Query: 112 G-----------LNISDVESKRELKFPC------FYTDQGTVNMFLRPIEGITIVVDIEE 154
G L + + K LK Y D G N + PIE + VVD+E+
Sbjct: 208 GITDAKKVITTPLTVGYFDGKDGLKQDARLLKVISYLDVGDGNYWAHPIENLVAVVDLEQ 267
Query: 155 MKVTQYNDREVAPIP-KSEPTEYRWSKLKPPFGPRLNSVTTLPTGPGFKIDGNTVKWANW 213
K+ + + V P+P + P + R ++ P P P G + I G+ + W NW
Sbjct: 268 KKIVKIEEGPVVPVPMTARPFDGR-DRVAPAVKPMQ---IIEPEGKNYTITGDMIHWRNW 323
Query: 214 VFNVGFDARVGTIISTAS----------IY---------------------------DVD 236
F++ ++RVG +IST + +Y D
Sbjct: 324 DFHLSMNSRVGPMISTVTYNDNGTKRKVMYEGSLGGMIVPYGDPDIGWYFKAYLNSGDYG 383
Query: 237 MHKYRRPL---KDCPPNAVFIDGYFTSQDGAPIQTPNAICIFERHTGDVMWRHTEAEMPG 293
M P+ KD P NAV ++ G P++ P AI +FER+ G ++H E P
Sbjct: 384 MGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERYAGP-EYKHQEMGQPN 442
Query: 294 DVREVRPEVSLVVRMVATVGNYDYVIDWEFKPSGSIKLGCKVRPVEYT--------HIDQ 345
E R LVVR ++TVGN DY+ DW F +G+I + +E H +
Sbjct: 443 VSTERR---ELVVRWISTVGNXDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTMHDET 499
Query: 346 IKEDQQ-GKLVADNTIGVNHDHFLNYYLDLDIDGYANSFEKTKLTVEKETAK-------- 396
K+D + G L+ N +G H H N+ LDLD+DG NS V+ TA
Sbjct: 500 AKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMDPVVKPNTAGGPRTSTMQ 559
Query: 397 -------TEFEARLKLDTKPMEFAMVNPNKKTKIGHXXX------XXXXXXXXXXXXXTD 443
E +A K D + + NPNK+ ++G+
Sbjct: 560 VNQYNIGNEQDAAQKFDPGTIRL-LSNPNKENRMGNPVSYQIIPYAGGTHPVAKGAQFAP 618
Query: 444 DDYPQIRAGFTDYNIWVTPYNKSEKYSGGNYVDQSHGDDTLLQWTDGNREIENKDIVLWY 503
D++ R F D +WVT Y+ E++ G Y ++S D L Q++ N ++N D V+W
Sbjct: 619 DEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNTDAVVWM 678
Query: 504 TMGIHHAPCQEDFPVMPTVSGGFELRPTNFFEYNPVLKVI 543
T G H E++P+MPT L+P NFF+ P L +
Sbjct: 679 TTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTLGAL 718
>pdb|1JRQ|A Chain A, X-Ray Structure Analysis Of The Role Of The Conserved
Tyrosine-369 In Active Site Of E. Coli Amine Oxidase
pdb|1JRQ|B Chain B, X-Ray Structure Analysis Of The Role Of The Conserved
Tyrosine-369 In Active Site Of E. Coli Amine Oxidase
Length = 727
Score = 207 bits (526), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 177/640 (27%), Positives = 270/640 (42%), Gaps = 114/640 (17%)
Query: 7 PLDSLSPAEFTLVQTIVKTSYPSN-NLSFHYVGLDEPDKAVVYSW-LSNSKIKIPRRAIV 64
PL++L+ E IVK S N F + L PDK V+++ L N + PR+A V
Sbjct: 95 PLNALTADEIKQAVEIVKASADFKPNTRFTEISLLPPDKEAVWAFALENKPVDQPRKADV 154
Query: 65 IDLSRRSIVS-------------DKVYTGHGFPLLTLEEQRTGAAPVLAYEPFKASVKKR 111
I L + I+ + HG ++ L++ + + E F A+VKKR
Sbjct: 155 IMLDGKHIIEAVVDLQNNKLLSWQPIKDAHG--MVLLDDFASVQNIINNSEEFAAAVKKR 212
Query: 112 G-----------LNISDVESKRELKFPC------FYTDQGTVNMFLRPIEGITIVVDIEE 154
G L + + K LK Y D G N + PIE + VVD+E+
Sbjct: 213 GITDAKKVITTPLTVGYFDGKDGLKQDARLLKVISYLDVGDGNYWAHPIENLVAVVDLEQ 272
Query: 155 MKVTQYNDREVAPIP-KSEPTEYRWSKLKPPFGPRLNSVTTLPTGPGFKIDGNTVKWANW 213
K+ + + V P+P + P + R ++ P P P G + I G+ + W NW
Sbjct: 273 KKIVKIEEGPVVPVPMTARPFDGR-DRVAPAVKPMQ---IIEPEGKNYTITGDMIHWRNW 328
Query: 214 VFNVGFDARVGTIISTAS----------IY---------------------------DVD 236
F++ ++RVG +IST + +Y D
Sbjct: 329 DFHLSMNSRVGPMISTVTYNDNGTKRKVMYEGSLGGMIVPFGDPDIGWYFKAYLDSGDYG 388
Query: 237 MHKYRRPL---KDCPPNAVFIDGYFTSQDGAPIQTPNAICIFERHTGDVMWRHTEAEMPG 293
M P+ KD P NAV ++ G P++ P AI +FER+ G ++H E P
Sbjct: 389 MGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERYAGP-EYKHQEMGQPN 447
Query: 294 DVREVRPEVSLVVRMVATVGNYDYVIDWEFKPSGSIKLGCKVRPVEYT--------HIDQ 345
E R LVVR ++TVGN DY+ DW F +G+I + +E H +
Sbjct: 448 VSTERR---ELVVRWISTVGNXDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTMHDET 504
Query: 346 IKEDQQ-GKLVADNTIGVNHDHFLNYYLDLDIDGYANSFEKTKLTVEKETAK-------- 396
K+D + G L+ N +G H H N+ LDLD+DG NS V+ TA
Sbjct: 505 AKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMDPVVKPNTAGGPRTSTMQ 564
Query: 397 -------TEFEARLKLDTKPMEFAMVNPNKKTKIGHXXX------XXXXXXXXXXXXXTD 443
E +A K D + + NPNK+ ++G+
Sbjct: 565 VNQYNIGNEQDAAQKFDPGTIRL-LSNPNKENRMGNPVSYQIIPYAGGTHPVAKGAQFAP 623
Query: 444 DDYPQIRAGFTDYNIWVTPYNKSEKYSGGNYVDQSHGDDTLLQWTDGNREIENKDIVLWY 503
D++ R F D +WVT Y+ E++ G Y ++S D L Q++ N ++N D V+W
Sbjct: 624 DEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNTDAVVWM 683
Query: 504 TMGIHHAPCQEDFPVMPTVSGGFELRPTNFFEYNPVLKVI 543
T G H E++P+MPT L+P NFF+ P L +
Sbjct: 684 TTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTLGAL 723
>pdb|1QAF|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
pdb|1QAF|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
Length = 721
Score = 207 bits (526), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 177/640 (27%), Positives = 270/640 (42%), Gaps = 114/640 (17%)
Query: 7 PLDSLSPAEFTLVQTIVKTSYPSN-NLSFHYVGLDEPDKAVVYSW-LSNSKIKIPRRAIV 64
PL++L+ E IVK S N F + L PDK V+++ L N + PR+A V
Sbjct: 90 PLNALTADEIKQAVEIVKASADFKPNTRFTEISLLPPDKEAVWAFALENKPVDQPRKADV 149
Query: 65 IDLSRRSIVS-------------DKVYTGHGFPLLTLEEQRTGAAPVLAYEPFKASVKKR 111
I L + I+ + HG ++ L++ + + E F A+VKKR
Sbjct: 150 IMLDGKHIIEAVVDLQNNKLLSWQPIKDAHG--MVLLDDFASVQNIINNSEEFAAAVKKR 207
Query: 112 G-----------LNISDVESKRELKFPC------FYTDQGTVNMFLRPIEGITIVVDIEE 154
G L + + K LK Y D G N + PIE + VVD+E+
Sbjct: 208 GITDAKKVITTPLTVGYFDGKDGLKQDARLLKVISYLDVGDGNYWAHPIENLVAVVDLEQ 267
Query: 155 MKVTQYNDREVAPIP-KSEPTEYRWSKLKPPFGPRLNSVTTLPTGPGFKIDGNTVKWANW 213
K+ + + V P+P + P + R ++ P P P G + I G+ + W NW
Sbjct: 268 KKIVKIEEGPVVPVPMTARPFDGR-DRVAPAVKPMQ---IIEPEGKNYTITGDMIHWRNW 323
Query: 214 VFNVGFDARVGTIISTAS----------IY---------------------------DVD 236
F++ ++RVG +IST + +Y D
Sbjct: 324 DFHLSMNSRVGPMISTVTYNDNGTKRKVMYEGSLGGMIVPYGDPDIGWYFKAYLESGDYG 383
Query: 237 MHKYRRPL---KDCPPNAVFIDGYFTSQDGAPIQTPNAICIFERHTGDVMWRHTEAEMPG 293
M P+ KD P NAV ++ G P++ P AI +FER+ G ++H E P
Sbjct: 384 MGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERYAGP-EYKHQEMGQPN 442
Query: 294 DVREVRPEVSLVVRMVATVGNYDYVIDWEFKPSGSIKLGCKVRPVEYT--------HIDQ 345
E R LVVR ++TVGN DY+ DW F +G+I + +E H +
Sbjct: 443 VSTERR---ELVVRWISTVGNXDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTMHDET 499
Query: 346 IKEDQQ-GKLVADNTIGVNHDHFLNYYLDLDIDGYANSFEKTKLTVEKETAK-------- 396
K+D + G L+ N +G H H N+ LDLD+DG NS V+ TA
Sbjct: 500 AKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMDPVVKPNTAGGPRTSTMQ 559
Query: 397 -------TEFEARLKLDTKPMEFAMVNPNKKTKIGHXXX------XXXXXXXXXXXXXTD 443
E +A K D + + NPNK+ ++G+
Sbjct: 560 VNQYNIGNEQDAAQKFDPGTIRL-LSNPNKENRMGNPVSYQIIPYAGGTHPVAKGAQFAP 618
Query: 444 DDYPQIRAGFTDYNIWVTPYNKSEKYSGGNYVDQSHGDDTLLQWTDGNREIENKDIVLWY 503
D++ R F D +WVT Y+ E++ G Y ++S D L Q++ N ++N D V+W
Sbjct: 619 DEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNTDAVVWM 678
Query: 504 TMGIHHAPCQEDFPVMPTVSGGFELRPTNFFEYNPVLKVI 543
T G H E++P+MPT L+P NFF+ P L +
Sbjct: 679 TTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTLGAL 718
>pdb|1OAC|A Chain A, Crystal Structure Of A Quinoenzyme: Copper Amine Oxidase
Of Escherichia Coli At 2 Angstroems Resolution
pdb|1OAC|B Chain B, Crystal Structure Of A Quinoenzyme: Copper Amine Oxidase
Of Escherichia Coli At 2 Angstroems Resolution
pdb|1SPU|A Chain A, Structure Of Oxidoreductase
pdb|1SPU|B Chain B, Structure Of Oxidoreductase
pdb|1D6U|A Chain A, Crystal Structure Of E. Coli Amine Oxidase Anaerobically
Reduced With Beta-Phenylethylamine
pdb|1D6U|B Chain B, Crystal Structure Of E. Coli Amine Oxidase Anaerobically
Reduced With Beta-Phenylethylamine
pdb|1D6Y|A Chain A, Crystal Structure Of E. Coli Copper-Containing Amine
Oxidase Anaerobically Reduced With Beta-Phenylethylamine
And Complexed With Nitric Oxide.
pdb|1D6Y|B Chain B, Crystal Structure Of E. Coli Copper-Containing Amine
Oxidase Anaerobically Reduced With Beta-Phenylethylamine
And Complexed With Nitric Oxide.
pdb|1D6Z|A Chain A, Crystal Structure Of The Aerobically Freeze Trapped
Rate-determining Catalytic Intermediate Of E. Coli
Copper-containing Amine Oxidase.
pdb|1D6Z|B Chain B, Crystal Structure Of The Aerobically Freeze Trapped
Rate-determining Catalytic Intermediate Of E. Coli
Copper-containing Amine Oxidase.
pdb|1DYU|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase: X-Ray Crystallographic
Studies With Mutational Variants.
pdb|1DYU|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase: X-Ray Crystallographic
Studies With Mutational Variants.
pdb|1LVN|A Chain A, Crystal Structure Of E. Coli Amine Oxidase Complexed With
Tranylcypromine
pdb|1LVN|B Chain B, Crystal Structure Of E. Coli Amine Oxidase Complexed With
Tranylcypromine
pdb|2W0Q|A Chain A, E. Coli Copper Amine Oxidase In Complex With Xenon
pdb|2W0Q|B Chain B, E. Coli Copper Amine Oxidase In Complex With Xenon
pdb|2WO0|A Chain A, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WO0|B Chain B, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WOF|A Chain A, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WOF|B Chain B, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WOH|A Chain A, Strontium Soaked E. Coli Copper Amine Oxidase
pdb|2WOH|B Chain B, Strontium Soaked E. Coli Copper Amine Oxidase
Length = 727
Score = 207 bits (526), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 177/640 (27%), Positives = 270/640 (42%), Gaps = 114/640 (17%)
Query: 7 PLDSLSPAEFTLVQTIVKTSYPSN-NLSFHYVGLDEPDKAVVYSW-LSNSKIKIPRRAIV 64
PL++L+ E IVK S N F + L PDK V+++ L N + PR+A V
Sbjct: 95 PLNALTADEIKQAVEIVKASADFKPNTRFTEISLLPPDKEAVWAFALENKPVDQPRKADV 154
Query: 65 IDLSRRSIVS-------------DKVYTGHGFPLLTLEEQRTGAAPVLAYEPFKASVKKR 111
I L + I+ + HG ++ L++ + + E F A+VKKR
Sbjct: 155 IMLDGKHIIEAVVDLQNNKLLSWQPIKDAHG--MVLLDDFASVQNIINNSEEFAAAVKKR 212
Query: 112 G-----------LNISDVESKRELKFPC------FYTDQGTVNMFLRPIEGITIVVDIEE 154
G L + + K LK Y D G N + PIE + VVD+E+
Sbjct: 213 GITDAKKVITTPLTVGYFDGKDGLKQDARLLKVISYLDVGDGNYWAHPIENLVAVVDLEQ 272
Query: 155 MKVTQYNDREVAPIP-KSEPTEYRWSKLKPPFGPRLNSVTTLPTGPGFKIDGNTVKWANW 213
K+ + + V P+P + P + R ++ P P P G + I G+ + W NW
Sbjct: 273 KKIVKIEEGPVVPVPMTARPFDGR-DRVAPAVKPMQ---IIEPEGKNYTITGDMIHWRNW 328
Query: 214 VFNVGFDARVGTIISTAS----------IY---------------------------DVD 236
F++ ++RVG +IST + +Y D
Sbjct: 329 DFHLSMNSRVGPMISTVTYNDNGTKRKVMYEGSLGGMIVPYGDPDIGWYFKAYLDSGDYG 388
Query: 237 MHKYRRPL---KDCPPNAVFIDGYFTSQDGAPIQTPNAICIFERHTGDVMWRHTEAEMPG 293
M P+ KD P NAV ++ G P++ P AI +FER+ G ++H E P
Sbjct: 389 MGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERYAGP-EYKHQEMGQPN 447
Query: 294 DVREVRPEVSLVVRMVATVGNYDYVIDWEFKPSGSIKLGCKVRPVEYT--------HIDQ 345
E R LVVR ++TVGN DY+ DW F +G+I + +E H +
Sbjct: 448 VSTERR---ELVVRWISTVGNXDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTMHDET 504
Query: 346 IKEDQQ-GKLVADNTIGVNHDHFLNYYLDLDIDGYANSFEKTKLTVEKETAK-------- 396
K+D + G L+ N +G H H N+ LDLD+DG NS V+ TA
Sbjct: 505 AKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMDPVVKPNTAGGPRTSTMQ 564
Query: 397 -------TEFEARLKLDTKPMEFAMVNPNKKTKIGHXXX------XXXXXXXXXXXXXTD 443
E +A K D + + NPNK+ ++G+
Sbjct: 565 VNQYNIGNEQDAAQKFDPGTIRL-LSNPNKENRMGNPVSYQIIPYAGGTHPVAKGAQFAP 623
Query: 444 DDYPQIRAGFTDYNIWVTPYNKSEKYSGGNYVDQSHGDDTLLQWTDGNREIENKDIVLWY 503
D++ R F D +WVT Y+ E++ G Y ++S D L Q++ N ++N D V+W
Sbjct: 624 DEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNTDAVVWM 683
Query: 504 TMGIHHAPCQEDFPVMPTVSGGFELRPTNFFEYNPVLKVI 543
T G H E++P+MPT L+P NFF+ P L +
Sbjct: 684 TTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTLGAL 723
>pdb|1QAK|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-ray Crystallographic
Studies With Mutational Variants
pdb|1QAK|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-ray Crystallographic
Studies With Mutational Variants
Length = 722
Score = 207 bits (526), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 177/640 (27%), Positives = 270/640 (42%), Gaps = 114/640 (17%)
Query: 7 PLDSLSPAEFTLVQTIVKTSYPSN-NLSFHYVGLDEPDKAVVYSW-LSNSKIKIPRRAIV 64
PL++L+ E IVK S N F + L PDK V+++ L N + PR+A V
Sbjct: 90 PLNALTADEIKQAVEIVKASADFKPNTRFTEISLLPPDKEAVWAFALENKPVDQPRKADV 149
Query: 65 IDLSRRSIVS-------------DKVYTGHGFPLLTLEEQRTGAAPVLAYEPFKASVKKR 111
I L + I+ + HG ++ L++ + + E F A+VKKR
Sbjct: 150 IMLDGKHIIEAVVDLQNNKLLSWQPIKDAHG--MVLLDDFASVQNIINNSEEFAAAVKKR 207
Query: 112 G-----------LNISDVESKRELKFPC------FYTDQGTVNMFLRPIEGITIVVDIEE 154
G L + + K LK Y D G N + PIE + VVD+E+
Sbjct: 208 GITDAKKVITTPLTVGYFDGKDGLKQDARLLKVISYLDVGDGNYWAHPIENLVAVVDLEQ 267
Query: 155 MKVTQYNDREVAPIP-KSEPTEYRWSKLKPPFGPRLNSVTTLPTGPGFKIDGNTVKWANW 213
K+ + + V P+P + P + R ++ P P P G + I G+ + W NW
Sbjct: 268 KKIVKIEEGPVVPVPMTARPFDGR-DRVAPAVKPMQ---IIEPEGKNYTITGDMIHWRNW 323
Query: 214 VFNVGFDARVGTIISTAS----------IY---------------------------DVD 236
F++ ++RVG +IST + +Y D
Sbjct: 324 DFHLSMNSRVGPMISTVTYNDNGTKRKVMYEGSLGGMIVPYGDPDIGWYFKAYLASGDYG 383
Query: 237 MHKYRRPL---KDCPPNAVFIDGYFTSQDGAPIQTPNAICIFERHTGDVMWRHTEAEMPG 293
M P+ KD P NAV ++ G P++ P AI +FER+ G ++H E P
Sbjct: 384 MGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERYAGP-EYKHQEMGQPN 442
Query: 294 DVREVRPEVSLVVRMVATVGNYDYVIDWEFKPSGSIKLGCKVRPVEYT--------HIDQ 345
E R LVVR ++TVGN DY+ DW F +G+I + +E H +
Sbjct: 443 VSTERR---ELVVRWISTVGNXDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTMHDET 499
Query: 346 IKEDQQ-GKLVADNTIGVNHDHFLNYYLDLDIDGYANSFEKTKLTVEKETAK-------- 396
K+D + G L+ N +G H H N+ LDLD+DG NS V+ TA
Sbjct: 500 AKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMDPVVKPNTAGGPRTSTMQ 559
Query: 397 -------TEFEARLKLDTKPMEFAMVNPNKKTKIGHXXX------XXXXXXXXXXXXXTD 443
E +A K D + + NPNK+ ++G+
Sbjct: 560 VNQYNIGNEQDAAQKFDPGTIRL-LSNPNKENRMGNPVSYQIIPYAGGTHPVAKGAQFAP 618
Query: 444 DDYPQIRAGFTDYNIWVTPYNKSEKYSGGNYVDQSHGDDTLLQWTDGNREIENKDIVLWY 503
D++ R F D +WVT Y+ E++ G Y ++S D L Q++ N ++N D V+W
Sbjct: 619 DEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNTDAVVWM 678
Query: 504 TMGIHHAPCQEDFPVMPTVSGGFELRPTNFFEYNPVLKVI 543
T G H E++P+MPT L+P NFF+ P L +
Sbjct: 679 TTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTLGAL 718
>pdb|1IVU|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Initial Intermediate In
Topaquinone Biogenesis
pdb|1IVU|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Initial Intermediate In
Topaquinone Biogenesis
pdb|1WMP|A Chain A, Crystal Structure Of Amine Oxidase Complexed With Cobalt
Ion
pdb|1WMP|B Chain B, Crystal Structure Of Amine Oxidase Complexed With Cobalt
Ion
pdb|1AVK|A Chain A, Crystal Structures Of The Copper-Containing Amine Oxidase
From Arthrobacter Globiformis In The Holo-And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
Length = 638
Score = 155 bits (392), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 155/643 (24%), Positives = 254/643 (39%), Gaps = 109/643 (16%)
Query: 7 PLDSLSPAEFTLVQTIVKTSYPSNNLSFHYVGLDEPDKAVVYSWL------SNSKIKIPR 60
P S E + VQ I++T+ GL P+K + Y + + S+ + R
Sbjct: 11 PFRLASAGEISEVQGILRTA-----------GLLGPEKRIAYLGVLDPARGAGSEAEDRR 59
Query: 61 -RAIVIDLS--RRSIVSDKVYTGHGFPLLTLEEQRTGAAP-----------VLAY-EPFK 105
R + D+S R V+ V G + L+ TG P +LA E +
Sbjct: 60 FRVFIHDVSGARPQEVTVSVTNGTVISAVELDTAATGELPVLEEEFEVVEQLLATDERWL 119
Query: 106 ASVKKRGLNISDVE---------------SKRELKFPCFYTDQGTVNMFLRPIEGITIVV 150
++ R L++S V +R L+ F D + + P++G+ V
Sbjct: 120 KALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWAHPVDGLVAYV 179
Query: 151 DIEEMKVTQYNDREVAPIPKSEPTEYRWSKLKPPFGPRLNSVT-TLPTGPGFKI-DGNTV 208
D+ +VT+ D V P+P +E Y +L P ++ T P GP F + GN +
Sbjct: 180 DVVSKEVTRVIDTGVFPVP-AEHGNYTDPELTGPLRTTQKPISITQPEGPSFTVTGGNHI 238
Query: 209 KWANWVFNVGFDARVGTIISTASIYDVD-------------------------------- 236
+W W +VGFD R G ++ + D D
Sbjct: 239 EWEKWSLDVGFDVREGVVLHNIAFRDGDRLRPIINRASIAEMVVPYGDPSPIRSWQNYFD 298
Query: 237 -----MHKYRRPLK---DCPPNAVFIDGYFTSQDGAPIQTPNAICIFERHTGDVMWRHTE 288
+ +Y L+ DC + ++ + G P + N IC+ E G ++ +H++
Sbjct: 299 TGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWG-ILAKHSD 357
Query: 289 AEMPGDVREVRPEVSLVVRMVATVGNYDYVIDWEFKPSGSIKLGCKVRPVEYTHIDQIKE 348
+ + R +V+ T+GNYDY W G+I+ K V +T
Sbjct: 358 --LWSGINYTRRNRRMVISFFTTIGNYDYGFYWYLYLDGTIEFEAKATGVVFTSAFPEGG 415
Query: 349 DQQGKLVADNTIGVNHDHFLNYYLDLDIDGYANSFEKTKLTVE--------------KET 394
+A H H + LD+ IDG+ N E+ + + K T
Sbjct: 416 SDNISQLAPGLGAPFHQHIFSARLDMAIDGFTNRVEEEDVVRQTMGPGNERGNAFSRKRT 475
Query: 395 AKT-EFEARLKLDTKPME-FAMVNPNKKTKIGHXXXXXXXXXXXXXXXXTDDDYPQIRAG 452
T E EA + D + + + NP K ++ RA
Sbjct: 476 VLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHNQPTLLADPGSSIARRAA 535
Query: 453 FTDYNIWVTPYNKSEKYSGGNYVDQSHGDDTLLQWTDGNREIENKDIVLWYTMGIHHAPC 512
F ++WVT Y E+Y G++V+Q G L + +R+I+ +DIV+W+T G+ H P
Sbjct: 536 FATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRDIDGQDIVVWHTFGLTHFPR 595
Query: 513 QEDFPVMPTVSGGFELRPTNFFEYNPVLKVIPPKHVQWPNCTG 555
ED+P+MP + GF+LRP FF+ +PVL V +C G
Sbjct: 596 VEDWPIMPVDTVGFKLRPEGFFDRSPVLDVPANPSQSGSHCHG 638
>pdb|1SIH|A Chain A, Agao In Covalent Complex With The Inhibitor Moba ("4-(4-
Methylphenoxy)-2-Butyn-1-Amine")
pdb|1SII|A Chain A, Agao In Covalent Complex With The Inhibitor Noba
("4-(2-Naphthyloxy)- 2-Butyn-1-Amine")
pdb|1RJO|A Chain A, Agao + Xe
pdb|2BT3|A Chain A, Agao In Complex With Ruthenium-c4-wire At 1.73 Angstroms
pdb|1W4N|A Chain A, Agao Covalent Complex With Tranylcypromine
pdb|1W4N|B Chain B, Agao Covalent Complex With Tranylcypromine
pdb|1W5Z|A Chain A, Agao Covalent Complex With Benzylhydrazine
pdb|1W6C|A Chain A, Agao Holoenzyme In A Small Cell, At 2.2 Angstroms
pdb|1W6G|A Chain A, Agao Holoenzyme At 1.55 Angstroms
pdb|2CFD|A Chain A, Agao In Complex With Wc4l3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Lambda Enantiomer, Data Set 3)
pdb|2CFD|B Chain B, Agao In Complex With Wc4l3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Lambda Enantiomer, Data Set 3)
pdb|2CFG|A Chain A, Agao In Complex With Wc4d3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Delta Enantiomer, Data Set 3)
pdb|2CFG|B Chain B, Agao In Complex With Wc4d3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Delta Enantiomer, Data Set 3)
pdb|2CFK|A Chain A, Agao In Complex With Wc5 (Ru-Wire Inhibitor, 5-Carbon
Linker)
pdb|2CFL|A Chain A, Agao In Complex With Wc6b (Ru-Wire Inhibitor, 6-Carbon
Linker, Data Set B)
pdb|2CFW|A Chain A, Agao In Complex With Wc7a (Ru-Wire Inhibitor, 7-Carbon
Linker, Data Set A)
pdb|2CG0|A Chain A, Agao In Complex With Wc9a (Ru-Wire Inhibitor, 9-Carbon
Linker, Data Set A)
pdb|2CG1|A Chain A, Agao In Complex With Wc11b (Ru-Wire Inhibitor, 11-Carbon
Linker, Data Set B)
pdb|3KII|A Chain A, Agao 5-Phenoxy-2,3-Pentadienylamine Complex
pdb|3KII|B Chain B, Agao 5-Phenoxy-2,3-Pentadienylamine Complex
pdb|3KN4|A Chain A, Agao 6-Phenyl-2,3-Hexadienylamine Complex
Length = 646
Score = 153 bits (386), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 154/645 (23%), Positives = 254/645 (39%), Gaps = 109/645 (16%)
Query: 7 PLDSLSPAEFTLVQTIVKTSYPSNNLSFHYVGLDEPDKAVVYSWL------SNSKIKIPR 60
P S E + VQ I++T+ GL P+K + Y + + S+ + R
Sbjct: 9 PFRLASAGEISEVQGILRTA-----------GLLGPEKRIAYLGVLDPARGAGSEAEDRR 57
Query: 61 -RAIVIDLS--RRSIVSDKVYTGHGFPLLTLEEQRTGAAP-----------VLAY-EPFK 105
R + D+S R V+ V G + L+ TG P +LA E +
Sbjct: 58 FRVFIHDVSGARPQEVTVSVTNGTVISAVELDTAATGELPVLEEEFEVVEQLLATDERWL 117
Query: 106 ASVKKRGLNISDVE---------------SKRELKFPCFYTDQGTVNMFLRPIEGITIVV 150
++ R L++S V +R L+ F D + + P++G+ V
Sbjct: 118 KALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWAHPVDGLVAYV 177
Query: 151 DIEEMKVTQYNDREVAPIPKSEPTEYRWSKLKPPFGPRLNSVT-TLPTGPGFKI-DGNTV 208
D+ +VT+ D V P+P +E Y +L P ++ T P GP F + GN +
Sbjct: 178 DVVSKEVTRVIDTGVFPVP-AEHGNYTDPELTGPLRTTQKPISITQPEGPSFTVTGGNHI 236
Query: 209 KWANWVFNVGFDARVGTIISTASIYDVD-------------------------------- 236
+W W +VGFD R G ++ + D D
Sbjct: 237 EWEKWSLDVGFDVREGVVLHNIAFRDGDRLRPIINRASIAEMVVPYGDPSPIRSWQNYFD 296
Query: 237 -----MHKYRRPLK---DCPPNAVFIDGYFTSQDGAPIQTPNAICIFERHTGDVMWRHTE 288
+ +Y L+ DC + ++ + G P + N IC+ E G ++ +H++
Sbjct: 297 TGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWG-ILAKHSD 355
Query: 289 AEMPGDVREVRPEVSLVVRMVATVGNYDYVIDWEFKPSGSIKLGCKVRPVEYTHIDQIKE 348
+ + R +V+ T+GN DY W G+I+ K V +T
Sbjct: 356 --LWSGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKATGVVFTSAFPEGG 413
Query: 349 DQQGKLVADNTIGVNHDHFLNYYLDLDIDGYANSFEKTKLTVE--------------KET 394
+A H H + LD+ IDG+ N E+ + + K T
Sbjct: 414 SDNISQLAPGLGAPFHQHIFSARLDMAIDGFTNRVEEEDVVRQTMGPGNERGNAFSRKRT 473
Query: 395 AKT-EFEARLKLDTKPME-FAMVNPNKKTKIGHXXXXXXXXXXXXXXXXTDDDYPQIRAG 452
T E EA + D + + + NP K ++ RA
Sbjct: 474 VLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHNQPTLLADPGSSIARRAA 533
Query: 453 FTDYNIWVTPYNKSEKYSGGNYVDQSHGDDTLLQWTDGNREIENKDIVLWYTMGIHHAPC 512
F ++WVT Y E+Y G++V+Q G L + +R+I+ +DIV+W+T G+ H P
Sbjct: 534 FATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRDIDGQDIVVWHTFGLTHFPR 593
Query: 513 QEDFPVMPTVSGGFELRPTNFFEYNPVLKVIPPKHVQWPNCTGKH 557
ED+P+MP + GF+LRP FF+ +PVL V +C G +
Sbjct: 594 VEDWPIMPVDTVGFKLRPEGFFDRSPVLDVPANPSQSGSHCHGSN 638
>pdb|2CWT|A Chain A, Catalytic Base Deletion In Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|2CWT|B Chain B, Catalytic Base Deletion In Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|2CWU|A Chain A, Substrate Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2CWU|B Chain B, Substrate Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2CWV|A Chain A, Product Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2CWV|B Chain B, Product Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2D1W|A Chain A, Substrate Schiff-Base Intermediate With Tyramine In Copper
Amine Oxidase From Arthrobacter Globiformis
pdb|2D1W|B Chain B, Substrate Schiff-Base Intermediate With Tyramine In Copper
Amine Oxidase From Arthrobacter Globiformis
Length = 638
Score = 152 bits (385), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 154/643 (23%), Positives = 253/643 (39%), Gaps = 109/643 (16%)
Query: 7 PLDSLSPAEFTLVQTIVKTSYPSNNLSFHYVGLDEPDKAVVYSWL------SNSKIKIPR 60
P S E + VQ I++T+ GL P+K + Y + + S+ + R
Sbjct: 11 PFRLASAGEISEVQGILRTA-----------GLLGPEKRIAYLGVLDPARGAGSEAEDRR 59
Query: 61 -RAIVIDLS--RRSIVSDKVYTGHGFPLLTLEEQRTGAAP-----------VLAY-EPFK 105
R + D+S R V+ V G + L+ TG P +LA E +
Sbjct: 60 FRVFIHDVSGARPQEVTVSVTNGTVISAVELDTAATGELPVLEEEFEVVEQLLATDERWL 119
Query: 106 ASVKKRGLNISDVE---------------SKRELKFPCFYTDQGTVNMFLRPIEGITIVV 150
++ R L++S V +R L+ F D + + P++G+ V
Sbjct: 120 KALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWAHPVDGLVAYV 179
Query: 151 DIEEMKVTQYNDREVAPIPKSEPTEYRWSKLKPPFGPRLNSVT-TLPTGPGFKI-DGNTV 208
D+ +VT+ D V P+P +E Y +L P ++ T P GP F + GN +
Sbjct: 180 DVVSKEVTRVIDTGVFPVP-AEHGNYTDPELTGPLRTTQKPISITQPEGPSFTVTGGNHI 238
Query: 209 KWANWVFNVGFDARVGTIISTASIYDVD-------------------------------- 236
+W W +VGFD R G ++ + D D
Sbjct: 239 EWEKWSLDVGFDVREGVVLHNIAFRDGDRLRPIINRASIAEMVVPYGDPSPIRSWQNYFA 298
Query: 237 -----MHKYRRPLK---DCPPNAVFIDGYFTSQDGAPIQTPNAICIFERHTGDVMWRHTE 288
+ +Y L+ DC + ++ + G P + N IC+ E G ++ +H++
Sbjct: 299 TGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWG-ILAKHSD 357
Query: 289 AEMPGDVREVRPEVSLVVRMVATVGNYDYVIDWEFKPSGSIKLGCKVRPVEYTHIDQIKE 348
+ + R +V+ T+GN DY W G+I+ K V +T
Sbjct: 358 --LWSGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKATGVVFTSAFPEGG 415
Query: 349 DQQGKLVADNTIGVNHDHFLNYYLDLDIDGYANSFEKTKLTVE--------------KET 394
+A H H + LD+ IDG+ N E+ + + K T
Sbjct: 416 SDNISQLAPGLGAPFHQHIFSARLDMAIDGFTNRVEEEDVVRQTMGPGNERGNAFSRKRT 475
Query: 395 AKT-EFEARLKLDTKPME-FAMVNPNKKTKIGHXXXXXXXXXXXXXXXXTDDDYPQIRAG 452
T E EA + D + + + NP K ++ RA
Sbjct: 476 VLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHNQPTLLADPGSSIARRAA 535
Query: 453 FTDYNIWVTPYNKSEKYSGGNYVDQSHGDDTLLQWTDGNREIENKDIVLWYTMGIHHAPC 512
F ++WVT Y E+Y G++V+Q G L + +R+I+ +DIV+W+T G+ H P
Sbjct: 536 FATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRDIDGQDIVVWHTFGLTHFPR 595
Query: 513 QEDFPVMPTVSGGFELRPTNFFEYNPVLKVIPPKHVQWPNCTG 555
ED+P+MP + GF+LRP FF+ +PVL V +C G
Sbjct: 596 VEDWPIMPVDTVGFKLRPEGFFDRSPVLDVPANPSQSGSHCHG 638
>pdb|2YX9|A Chain A, Crystal Structure Of D298k Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|2YX9|B Chain B, Crystal Structure Of D298k Copper Amine Oxidase From
Arthrobacter Globiformis
Length = 638
Score = 152 bits (385), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 154/643 (23%), Positives = 253/643 (39%), Gaps = 109/643 (16%)
Query: 7 PLDSLSPAEFTLVQTIVKTSYPSNNLSFHYVGLDEPDKAVVYSWL------SNSKIKIPR 60
P S E + VQ I++T+ GL P+K + Y + + S+ + R
Sbjct: 11 PFRLASAGEISEVQGILRTA-----------GLLGPEKRIAYLGVLDPARGAGSEAEDRR 59
Query: 61 -RAIVIDLS--RRSIVSDKVYTGHGFPLLTLEEQRTGAAP-----------VLAY-EPFK 105
R + D+S R V+ V G + L+ TG P +LA E +
Sbjct: 60 FRVFIHDVSGARPQEVTVSVTNGTVISAVELDTAATGELPVLEEEFEVVEQLLATDERWL 119
Query: 106 ASVKKRGLNISDVE---------------SKRELKFPCFYTDQGTVNMFLRPIEGITIVV 150
++ R L++S V +R L+ F D + + P++G+ V
Sbjct: 120 KALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWAHPVDGLVAYV 179
Query: 151 DIEEMKVTQYNDREVAPIPKSEPTEYRWSKLKPPFGPRLNSVT-TLPTGPGFKI-DGNTV 208
D+ +VT+ D V P+P +E Y +L P ++ T P GP F + GN +
Sbjct: 180 DVVSKEVTRVIDTGVFPVP-AEHGNYTDPELTGPLRTTQKPISITQPEGPSFTVTGGNHI 238
Query: 209 KWANWVFNVGFDARVGTIISTASIYDVD-------------------------------- 236
+W W +VGFD R G ++ + D D
Sbjct: 239 EWEKWSLDVGFDVREGVVLHNIAFRDGDRLRPIINRASIAEMVVPYGDPSPIRSWQNYFK 298
Query: 237 -----MHKYRRPLK---DCPPNAVFIDGYFTSQDGAPIQTPNAICIFERHTGDVMWRHTE 288
+ +Y L+ DC + ++ + G P + N IC+ E G ++ +H++
Sbjct: 299 TGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWG-ILAKHSD 357
Query: 289 AEMPGDVREVRPEVSLVVRMVATVGNYDYVIDWEFKPSGSIKLGCKVRPVEYTHIDQIKE 348
+ + R +V+ T+GN DY W G+I+ K V +T
Sbjct: 358 --LWSGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKATGVVFTSAFPEGG 415
Query: 349 DQQGKLVADNTIGVNHDHFLNYYLDLDIDGYANSFEKTKLTVE--------------KET 394
+A H H + LD+ IDG+ N E+ + + K T
Sbjct: 416 SDNISQLAPGLGAPFHQHIFSARLDMAIDGFTNRVEEEDVVRQTMGPGNERGNAFSRKRT 475
Query: 395 AKT-EFEARLKLDTKPME-FAMVNPNKKTKIGHXXXXXXXXXXXXXXXXTDDDYPQIRAG 452
T E EA + D + + + NP K ++ RA
Sbjct: 476 VLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHNQPTLLADPGSSIARRAA 535
Query: 453 FTDYNIWVTPYNKSEKYSGGNYVDQSHGDDTLLQWTDGNREIENKDIVLWYTMGIHHAPC 512
F ++WVT Y E+Y G++V+Q G L + +R+I+ +DIV+W+T G+ H P
Sbjct: 536 FATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRDIDGQDIVVWHTFGLTHFPR 595
Query: 513 QEDFPVMPTVSGGFELRPTNFFEYNPVLKVIPPKHVQWPNCTG 555
ED+P+MP + GF+LRP FF+ +PVL V +C G
Sbjct: 596 VEDWPIMPVDTVGFKLRPEGFFDRSPVLDVPANPSQSGSHCHG 638
>pdb|1IVV|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Early Intermediate In
Topaquinone Biogenesis
pdb|1IVV|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Early Intermediate In
Topaquinone Biogenesis
pdb|1IVW|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Late Intermediate In
Topaquinone Biogenesis
pdb|1IVW|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Late Intermediate In
Topaquinone Biogenesis
pdb|1IVX|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Holo Form Generated By
Biogenesis In Crystal.
pdb|1IVX|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Holo Form Generated By
Biogenesis In Crystal.
pdb|1IQX|A Chain A, Crystal Structure Of Cobalt-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IQX|B Chain B, Crystal Structure Of Cobalt-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IQY|A Chain A, Crystal Structure Of Nickel-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IQY|B Chain B, Crystal Structure Of Nickel-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IU7|A Chain A, Holo Form Of Copper-Containing Amine Oxidase From
Arthrobacter Globiformis
pdb|1IU7|B Chain B, Holo Form Of Copper-Containing Amine Oxidase From
Arthrobacter Globiformis
pdb|1WMN|A Chain A, Crystal Structure Of Topaquinone-Containing Amine Oxidase
Activated By Cobalt Ion
pdb|1WMN|B Chain B, Crystal Structure Of Topaquinone-Containing Amine Oxidase
Activated By Cobalt Ion
pdb|1WMO|A Chain A, Crystal Structure Of Topaquinone-containing Amine Oxidase
Activated By Nickel Ion
pdb|1WMO|B Chain B, Crystal Structure Of Topaquinone-containing Amine Oxidase
Activated By Nickel Ion
pdb|1AV4|A Chain A, Crystal Structures Of The Copper-Containing Amine Oxidase
From Arthrobacter Globiformis In The Holo-And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
pdb|1AVL|A Chain A, Crystal Structures Of The Copper-Containing Amine Oxidase
From Arthrobacter Globiformis In The Holo-And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
pdb|2E2T|A Chain A, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
Phenylhydrazine
pdb|2ZL8|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Substrate Schiff-Base
Intermediate Formed With Ethylamine
pdb|2ZL8|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Substrate Schiff-Base
Intermediate Formed With Ethylamine
pdb|3AMO|A Chain A, Time-Resolved X-Ray Crystal Structure Analysis Of
Enzymatic Reaction Of Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|3AMO|B Chain B, Time-Resolved X-Ray Crystal Structure Analysis Of
Enzymatic Reaction Of Copper Amine Oxidase From
Arthrobacter Globiformis
Length = 638
Score = 152 bits (384), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 154/643 (23%), Positives = 253/643 (39%), Gaps = 109/643 (16%)
Query: 7 PLDSLSPAEFTLVQTIVKTSYPSNNLSFHYVGLDEPDKAVVYSWL------SNSKIKIPR 60
P S E + VQ I++T+ GL P+K + Y + + S+ + R
Sbjct: 11 PFRLASAGEISEVQGILRTA-----------GLLGPEKRIAYLGVLDPARGAGSEAEDRR 59
Query: 61 -RAIVIDLS--RRSIVSDKVYTGHGFPLLTLEEQRTGAAP-----------VLAY-EPFK 105
R + D+S R V+ V G + L+ TG P +LA E +
Sbjct: 60 FRVFIHDVSGARPQEVTVSVTNGTVISAVELDTAATGELPVLEEEFEVVEQLLATDERWL 119
Query: 106 ASVKKRGLNISDVE---------------SKRELKFPCFYTDQGTVNMFLRPIEGITIVV 150
++ R L++S V +R L+ F D + + P++G+ V
Sbjct: 120 KALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWAHPVDGLVAYV 179
Query: 151 DIEEMKVTQYNDREVAPIPKSEPTEYRWSKLKPPFGPRLNSVT-TLPTGPGFKI-DGNTV 208
D+ +VT+ D V P+P +E Y +L P ++ T P GP F + GN +
Sbjct: 180 DVVSKEVTRVIDTGVFPVP-AEHGNYTDPELTGPLRTTQKPISITQPEGPSFTVTGGNHI 238
Query: 209 KWANWVFNVGFDARVGTIISTASIYDVD-------------------------------- 236
+W W +VGFD R G ++ + D D
Sbjct: 239 EWEKWSLDVGFDVREGVVLHNIAFRDGDRLRPIINRASIAEMVVPYGDPSPIRSWQNYFD 298
Query: 237 -----MHKYRRPLK---DCPPNAVFIDGYFTSQDGAPIQTPNAICIFERHTGDVMWRHTE 288
+ +Y L+ DC + ++ + G P + N IC+ E G ++ +H++
Sbjct: 299 TGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWG-ILAKHSD 357
Query: 289 AEMPGDVREVRPEVSLVVRMVATVGNYDYVIDWEFKPSGSIKLGCKVRPVEYTHIDQIKE 348
+ + R +V+ T+GN DY W G+I+ K V +T
Sbjct: 358 --LWSGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKATGVVFTSAFPEGG 415
Query: 349 DQQGKLVADNTIGVNHDHFLNYYLDLDIDGYANSFEKTKLTVE--------------KET 394
+A H H + LD+ IDG+ N E+ + + K T
Sbjct: 416 SDNISQLAPGLGAPFHQHIFSARLDMAIDGFTNRVEEEDVVRQTMGPGNERGNAFSRKRT 475
Query: 395 AKT-EFEARLKLDTKPME-FAMVNPNKKTKIGHXXXXXXXXXXXXXXXXTDDDYPQIRAG 452
T E EA + D + + + NP K ++ RA
Sbjct: 476 VLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHNQPTLLADPGSSIARRAA 535
Query: 453 FTDYNIWVTPYNKSEKYSGGNYVDQSHGDDTLLQWTDGNREIENKDIVLWYTMGIHHAPC 512
F ++WVT Y E+Y G++V+Q G L + +R+I+ +DIV+W+T G+ H P
Sbjct: 536 FATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRDIDGQDIVVWHTFGLTHFPR 595
Query: 513 QEDFPVMPTVSGGFELRPTNFFEYNPVLKVIPPKHVQWPNCTG 555
ED+P+MP + GF+LRP FF+ +PVL V +C G
Sbjct: 596 VEDWPIMPVDTVGFKLRPEGFFDRSPVLDVPANPSQSGSHCHG 638
>pdb|1UI7|A Chain A, Site-Directed Mutagenesis Of His433 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
pdb|1UI7|B Chain B, Site-Directed Mutagenesis Of His433 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
Length = 638
Score = 152 bits (383), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 154/643 (23%), Positives = 253/643 (39%), Gaps = 109/643 (16%)
Query: 7 PLDSLSPAEFTLVQTIVKTSYPSNNLSFHYVGLDEPDKAVVYSWL------SNSKIKIPR 60
P S E + VQ I++T+ GL P+K + Y + + S+ + R
Sbjct: 11 PFRLASAGEISEVQGILRTA-----------GLLGPEKRIAYLGVLDPARGAGSEAEDRR 59
Query: 61 -RAIVIDLS--RRSIVSDKVYTGHGFPLLTLEEQRTGAAP-----------VLAY-EPFK 105
R + D+S R V+ V G + L+ TG P +LA E +
Sbjct: 60 FRVFIHDVSGARPQEVTVSVTNGTVISAVELDTAATGELPVLEEEFEVVEQLLATDERWL 119
Query: 106 ASVKKRGLNISDVE---------------SKRELKFPCFYTDQGTVNMFLRPIEGITIVV 150
++ R L++S V +R L+ F D + + P++G+ V
Sbjct: 120 KALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWAHPVDGLVAYV 179
Query: 151 DIEEMKVTQYNDREVAPIPKSEPTEYRWSKLKPPFGPRLNSVT-TLPTGPGFKI-DGNTV 208
D+ +VT+ D V P+P +E Y +L P ++ T P GP F + GN +
Sbjct: 180 DVVSKEVTRVIDTGVFPVP-AEHGNYTDPELTGPLRTTQKPISITQPEGPSFTVTGGNHI 238
Query: 209 KWANWVFNVGFDARVGTIISTASIYDVD-------------------------------- 236
+W W +VGFD R G ++ + D D
Sbjct: 239 EWEKWSLDVGFDVREGVVLHNIAFRDGDRLRPIINRASIAEMVVPYGDPSPIRSWQNYFD 298
Query: 237 -----MHKYRRPLK---DCPPNAVFIDGYFTSQDGAPIQTPNAICIFERHTGDVMWRHTE 288
+ +Y L+ DC + ++ + G P + N IC+ E G ++ +H++
Sbjct: 299 TGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWG-ILAKHSD 357
Query: 289 AEMPGDVREVRPEVSLVVRMVATVGNYDYVIDWEFKPSGSIKLGCKVRPVEYTHIDQIKE 348
+ + R +V+ T+GNYDY W G+I+ K V +T
Sbjct: 358 --LWSGINYTRRNRRMVISFFTTIGNYDYGFYWYLYLDGTIEFEAKATGVVFTSAFPEGG 415
Query: 349 DQQGKLVADNTIGVNHDHFLNYYLDLDIDGYANSFEKTKLTVE--------------KET 394
+A H + LD+ IDG+ N E+ + + K T
Sbjct: 416 SDNISQLAPGLGAPFHQAIFSARLDMAIDGFTNRVEEEDVVRQTMGPGNERGNAFSRKRT 475
Query: 395 AKT-EFEARLKLDTKPME-FAMVNPNKKTKIGHXXXXXXXXXXXXXXXXTDDDYPQIRAG 452
T E EA + D + + + NP K ++ RA
Sbjct: 476 VLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHNQPTLLADPGSSIARRAA 535
Query: 453 FTDYNIWVTPYNKSEKYSGGNYVDQSHGDDTLLQWTDGNREIENKDIVLWYTMGIHHAPC 512
F ++WVT Y E+Y G++V+Q G L + +R+I+ +DIV+W+T G+ H P
Sbjct: 536 FATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRDIDGQDIVVWHTFGLTHFPR 595
Query: 513 QEDFPVMPTVSGGFELRPTNFFEYNPVLKVIPPKHVQWPNCTG 555
ED+P+MP + GF+LRP FF+ +PVL V +C G
Sbjct: 596 VEDWPIMPVDTVGFKLRPEGFFDRSPVLDVPANPSQSGSHCHG 638
>pdb|2E2U|A Chain A, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
4-Hydroxybenzylhydrazine
pdb|2E2U|B Chain B, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
4-Hydroxybenzylhydrazine
pdb|2E2V|A Chain A, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
Benzylhydrazine
pdb|2E2V|B Chain B, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
Benzylhydrazine
Length = 628
Score = 152 bits (383), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 152/630 (24%), Positives = 250/630 (39%), Gaps = 109/630 (17%)
Query: 7 PLDSLSPAEFTLVQTIVKTSYPSNNLSFHYVGLDEPDKAVVYSWL------SNSKIKIPR 60
P S E + VQ I++T+ GL P+K + Y + + S+ + R
Sbjct: 11 PFRLASAGEISEVQGILRTA-----------GLLGPEKRIAYLGVLDPARGAGSEAEDRR 59
Query: 61 -RAIVIDLS--RRSIVSDKVYTGHGFPLLTLEEQRTGAAP-----------VLAY-EPFK 105
R + D+S R V+ V G + L+ TG P +LA E +
Sbjct: 60 FRVFIHDVSGARPQEVTVSVTNGTVISAVELDTAATGELPVLEEEFEVVEQLLATDERWL 119
Query: 106 ASVKKRGLNISDVE---------------SKRELKFPCFYTDQGTVNMFLRPIEGITIVV 150
++ R L++S V +R L+ F D + + P++G+ V
Sbjct: 120 KALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWAHPVDGLVAYV 179
Query: 151 DIEEMKVTQYNDREVAPIPKSEPTEYRWSKLKPPFGPRLNSVT-TLPTGPGFKI-DGNTV 208
D+ +VT+ D V P+P +E Y +L P ++ T P GP F + GN +
Sbjct: 180 DVVSKEVTRVIDTGVFPVP-AEHGNYTDPELTGPLRTTQKPISITQPEGPSFTVTGGNHI 238
Query: 209 KWANWVFNVGFDARVGTIISTASIYDVD-------------------------------- 236
+W W +VGFD R G ++ + D D
Sbjct: 239 EWEKWSLDVGFDVREGVVLHNIAFRDGDRLRPIINRASIAEMVVPYGDPSPIRSWQNYFD 298
Query: 237 -----MHKYRRPLK---DCPPNAVFIDGYFTSQDGAPIQTPNAICIFERHTGDVMWRHTE 288
+ +Y L+ DC + ++ + G P + N IC+ E G ++ +H++
Sbjct: 299 TGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWG-ILAKHSD 357
Query: 289 AEMPGDVREVRPEVSLVVRMVATVGNYDYVIDWEFKPSGSIKLGCKVRPVEYTHIDQIKE 348
+ + R +V+ T+GN DY W G+I+ K V +T
Sbjct: 358 --LWSGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKATGVVFTSAFPEGG 415
Query: 349 DQQGKLVADNTIGVNHDHFLNYYLDLDIDGYANSFEKTKLTVE--------------KET 394
+A H H + LD+ IDG+ N E+ + + K T
Sbjct: 416 SDNISQLAPGLGAPFHQHIFSARLDMAIDGFTNRVEEEDVVRQTMGPGNERGNAFSRKRT 475
Query: 395 AKT-EFEARLKLDTKPME-FAMVNPNKKTKIGHXXXXXXXXXXXXXXXXTDDDYPQIRAG 452
T E EA + D + + + NP K ++ RA
Sbjct: 476 VLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHNQPTLLADPGSSIARRAA 535
Query: 453 FTDYNIWVTPYNKSEKYSGGNYVDQSHGDDTLLQWTDGNREIENKDIVLWYTMGIHHAPC 512
F ++WVT Y E+Y G++V+Q G L + +R+I+ +DIV+W+T G+ H P
Sbjct: 536 FATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRDIDGQDIVVWHTFGLTHFPR 595
Query: 513 QEDFPVMPTVSGGFELRPTNFFEYNPVLKV 542
ED+P+MP + GF+LRP FF+ +PVL V
Sbjct: 596 VEDWPIMPVDTVGFKLRPEGFFDRSPVLDV 625
>pdb|1UI8|A Chain A, Site-directed Mutagenesis Of His592 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
pdb|1UI8|B Chain B, Site-directed Mutagenesis Of His592 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
Length = 638
Score = 149 bits (375), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 153/643 (23%), Positives = 252/643 (39%), Gaps = 109/643 (16%)
Query: 7 PLDSLSPAEFTLVQTIVKTSYPSNNLSFHYVGLDEPDKAVVYSWL------SNSKIKIPR 60
P S E + VQ I++T+ GL P+K + Y + + S+ + R
Sbjct: 11 PFRLASAGEISEVQGILRTA-----------GLLGPEKRIAYLGVLDPARGAGSEAEDRR 59
Query: 61 -RAIVIDLS--RRSIVSDKVYTGHGFPLLTLEEQRTGAAP-----------VLAY-EPFK 105
R + D+S R V+ V G + L+ TG P +LA E +
Sbjct: 60 FRVFIHDVSGARPQEVTVSVTNGTVISAVELDTAATGELPVLEEEFEVVEQLLATDERWL 119
Query: 106 ASVKKRGLNISDVE---------------SKRELKFPCFYTDQGTVNMFLRPIEGITIVV 150
++ R L++S V +R L+ F D + + P++G+ V
Sbjct: 120 KALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWAHPVDGLVAYV 179
Query: 151 DIEEMKVTQYNDREVAPIPKSEPTEYRWSKLKPPFGPRLNSVT-TLPTGPGFKI-DGNTV 208
D+ +VT+ D V P+P +E Y +L P ++ T P GP F + GN +
Sbjct: 180 DVVSKEVTRVIDTGVFPVP-AEHGNYTDPELTGPLRTTQKPISITQPEGPSFTVTGGNHI 238
Query: 209 KWANWVFNVGFDARVGTIISTASIYDVD-------------------------------- 236
+W W +VGFD R G ++ + D D
Sbjct: 239 EWEKWSLDVGFDVREGVVLHNIAFRDGDRLRPIINRASIAEMVVPYGDPSPIRSWQNYFD 298
Query: 237 -----MHKYRRPLK---DCPPNAVFIDGYFTSQDGAPIQTPNAICIFERHTGDVMWRHTE 288
+ +Y L+ DC + ++ + G P + N IC+ E G ++ +H++
Sbjct: 299 TGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWG-ILAKHSD 357
Query: 289 AEMPGDVREVRPEVSLVVRMVATVGNYDYVIDWEFKPSGSIKLGCKVRPVEYTHIDQIKE 348
+ + R +V+ T+GN DY W G+I+ K V +T
Sbjct: 358 --LWSGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKATGVVFTSAFPEGG 415
Query: 349 DQQGKLVADNTIGVNHDHFLNYYLDLDIDGYANSFEKTKLTVE--------------KET 394
+A H H + LD+ IDG+ N E+ + + K T
Sbjct: 416 SDNISQLAPGLGAPFHQHIFSARLDMAIDGFTNRVEEEDVVRQTMGPGNERGNAFSRKRT 475
Query: 395 AKT-EFEARLKLDTKPME-FAMVNPNKKTKIGHXXXXXXXXXXXXXXXXTDDDYPQIRAG 452
T E EA + D + + + NP K ++ RA
Sbjct: 476 VLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHNQPTLLADPGSSIARRAA 535
Query: 453 FTDYNIWVTPYNKSEKYSGGNYVDQSHGDDTLLQWTDGNREIENKDIVLWYTMGIHHAPC 512
F ++WVT Y E+Y G++V+Q G L + +R+I+ +DIV+W+T G+ P
Sbjct: 536 FATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRDIDGQDIVVWHTFGLTAFPR 595
Query: 513 QEDFPVMPTVSGGFELRPTNFFEYNPVLKVIPPKHVQWPNCTG 555
ED+P+MP + GF+LRP FF+ +PVL V +C G
Sbjct: 596 VEDWPIMPVDTVGFKLRPEGFFDRSPVLDVPANPSQSGSHCHG 638
>pdb|3SX1|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo
Form
pdb|3SX1|B Chain B, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo
Form
pdb|3SX1|C Chain C, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo
Form
pdb|3SXX|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|B Chain B, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|C Chain C, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|D Chain D, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|E Chain E, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|F Chain F, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3T0U|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Cu(i)
pdb|3T0U|B Chain B, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Cu(i)
pdb|3T0U|C Chain C, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Cu(i)
Length = 692
Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 154/647 (23%), Positives = 255/647 (39%), Gaps = 120/647 (18%)
Query: 7 PLDSLSPAEFTLVQTIVKTSYPSNNLSFHYVGLDEPDKAVVYSWLSNSKIKIPRRAI--- 63
PLD LS AE VK+ + +SF+ V L EP + W PR A
Sbjct: 24 PLDPLSTAEIKAATNTVKSYFAGKKISFNTVTLREPARKAYIQWKEQGGPLPPRLAYYVI 83
Query: 64 -----------VIDLSRRSIVSDKVYTGHGFPLLTLE-----EQRTGAAPVLAYEPFKAS 107
++DL+ S++ + P+LT+E E+ P + + +
Sbjct: 84 LEAGKPGVKEGLVDLASLSVIETRALETVQ-PILTVEDLCSTEEVIRNDPAVIEQCVLSG 142
Query: 108 VKKRGLNISDVE------------SKRELKFPCFYTDQGTVNMFLRPIEGITIVVDIEEM 155
+ ++ + KR + +Y + + P++ +VD EE
Sbjct: 143 IPANEMHKVYCDPWTIGYDERWGTGKRLQQALVYYRSDEDDSQYSHPLD-FCPIVDTEEK 201
Query: 156 KVTQYNDREVAPIPKSEPTEYRWSKLKP-----------PFGPRLNSVTTLPTGPGFKID 204
KV + P + + ++++ + P P P +N T P G FK+
Sbjct: 202 KVIFID----IPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPIN--VTQPEGVSFKMT 255
Query: 205 GNTVKWANWVFNVGFDARVGTIISTASIYD------------------------------ 234
GN ++W+N+ F++GF+ R G ++S S D
Sbjct: 256 GNVMEWSNFKFHIGFNYREGIVLSDVSYNDHGNVRPIFHRISLSEMIVPYGSPEFPHQRK 315
Query: 235 --VDMHKY-----RRPLK---DCPPNAVFIDGYFTSQDGAPIQTPNAICIFERHTGDVMW 284
+D+ +Y PL DC ++D +F+ + G PI NA+CI E G +++
Sbjct: 316 HALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDG-LLF 374
Query: 285 RHTEAEMPGDVREVRPEVSLVVRMVATVGNYDYVIDWEFKPSGSIKLGCKVRPVEYTHID 344
+H++ V LVV + T NY+Y + W F G+I+L ++ + T+I
Sbjct: 375 KHSDFRDNFATSLVTRATKLVVSQIFTAANYEYCLYWVFMQDGAIRLDIRLTGILNTYI- 433
Query: 345 QIKEDQQ----GKLVADNTIGVNHDHFLNYYLDLDIDGYANSFEKT-------------- 386
+ +D++ G V N NH H + +D IDG NS
Sbjct: 434 -LGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSSPYPLGSPEN 492
Query: 387 ----KLTVEKETAKTEFEARLKLDTKP-MEFAMVNPNKKTKI-GHXXXXXXXXXXXXXXX 440
EK T KT ++ ++ + + NPNK G
Sbjct: 493 MYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLVSTQCPPLL 552
Query: 441 XTDDDYPQIRAGFTDYNIWVTPYNKSEKYSGGNYVDQSHGDDT--LLQWT-DGNREIENK 497
+ RA + +++ V PY + Y G++V Q GD + +W DG+ I+N
Sbjct: 553 AKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSENIDNT 612
Query: 498 DIVLWYTMGIHHAPCQEDFPVMPTVSGGFELRPTNFFEYNPVLKVIP 544
DI+ ++T GI H P EDFP+MP LRP +FF NP L + P
Sbjct: 613 DILFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPGLDIQP 659
>pdb|1EKM|A Chain A, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
pdb|1EKM|B Chain B, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
pdb|1EKM|C Chain C, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
Length = 656
Score = 146 bits (369), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 154/645 (23%), Positives = 252/645 (39%), Gaps = 116/645 (17%)
Query: 7 PLDSLSPAEFTLVQTIVKTSYPSNNLSFHYVGLDEPDKAVVYSWLSNSKIKIPRRAI--- 63
PLD LS AE VK+ + +SF+ V L EP + W PR A
Sbjct: 8 PLDPLSTAEIKAATNTVKSYFAGKKISFNTVTLREPARKAYIQWKEQGGPLPPRLAYYVI 67
Query: 64 -----------VIDLSRRSIVSDKVYTGHGFPLLTLE-----EQRTGAAPVLAYEPFKAS 107
++DL+ S++ + P+LT+E E+ P + + +
Sbjct: 68 LEAGKPGVKEGLVDLASLSVIETRALETVQ-PILTVEDLCSTEEVIRNDPAVIEQCVLSG 126
Query: 108 VKKRGLNISDVE------------SKRELKFPCFYTDQGTVNMFLRPIEGITIVVDIEEM 155
+ ++ + KR + +Y + + P++ +VD EE
Sbjct: 127 IPANEMHKVYCDPWTIGYDERWGTGKRLQQALVYYRSDEDDSQYSHPLD-FCPIVDTEEK 185
Query: 156 KVTQYNDREVAPIPKSEPTEYRWSKLKP-----------PFGPRLNSVTTLPTGPGFKID 204
KV + P + + ++++ + P P P +N T P G FK+
Sbjct: 186 KVIFID----IPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPIN--VTQPEGVSFKMT 239
Query: 205 GNTVKWANWVFNVGFDARVGTIISTASIYD------------------------------ 234
GN ++W+N+ F++GF+ R G ++S S D
Sbjct: 240 GNVMEWSNFKFHIGFNYREGIVLSDVSYNDHGNVRPIFHRISLSEMIVPYGSPEFPHQRK 299
Query: 235 --VDMHKY-----RRPLK---DCPPNAVFIDGYFTSQDGAPIQTPNAICIFERHTGDVMW 284
+D+ +Y PL DC ++D +F+ + G PI NA+CI E G +++
Sbjct: 300 HALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDG-LLF 358
Query: 285 RHTEAEMPGDVREVRPEVSLVVRMVATVGNYDYVIDWEFKPSGSIKLGCKVRPVEYTHI- 343
+H++ V LVV + T NY+Y + W F G+I+L ++ + T+I
Sbjct: 359 KHSDFRDNFATSLVTRATKLVVSQIFTAANYEYCLYWVFMQDGAIRLDIRLTGILNTYIL 418
Query: 344 -DQIKEDQQGKLVADNTIGVNHDHFLNYYLDLDIDGYANSFEKT---------------- 386
D + G V N NH H + +D IDG NS
Sbjct: 419 GDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSSPYPLGSPENMY 478
Query: 387 --KLTVEKETAKTEFEARLKLDTKP-MEFAMVNPNKKTKI-GHXXXXXXXXXXXXXXXXT 442
EK T KT ++ ++ + + NPNK G
Sbjct: 479 GNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLVSTQCPPLLAK 538
Query: 443 DDDYPQIRAGFTDYNIWVTPYNKSEKYSGGNYVDQSHGDDT--LLQWT-DGNREIENKDI 499
+ RA + +++ V PY + Y G++V Q GD + +W DG+ I+N DI
Sbjct: 539 EGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDI 598
Query: 500 VLWYTMGIHHAPCQEDFPVMPTVSGGFELRPTNFFEYNPVLKVIP 544
+ ++T GI H P EDFP+MP LRP +FF NP L + P
Sbjct: 599 LFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPGLDIQP 643
>pdb|3N9H|A Chain A, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|B Chain B, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|C Chain C, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|D Chain D, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|E Chain E, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|F Chain F, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
Length = 692
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 153/647 (23%), Positives = 254/647 (39%), Gaps = 120/647 (18%)
Query: 7 PLDSLSPAEFTLVQTIVKTSYPSNNLSFHYVGLDEPDKAVVYSWLSNSKIKIPRRAI--- 63
PLD LS AE VK+ + +SF+ V L EP + W PR A
Sbjct: 24 PLDPLSTAEIKAATNTVKSYFAGKKISFNTVTLREPARKAYIQWKEQGGPLPPRLAYYVI 83
Query: 64 -----------VIDLSRRSIVSDKVYTGHGFPLLTLE-----EQRTGAAPVLAYEPFKAS 107
++DL+ S++ + P+LT+E E+ P + + +
Sbjct: 84 LEAGKPGVKEGLVDLASLSVIETRALETVQ-PILTVEDLCSTEEVIRNDPAVIEQCVLSG 142
Query: 108 VKKRGLNISDVE------------SKRELKFPCFYTDQGTVNMFLRPIEGITIVVDIEEM 155
+ ++ + KR + +Y + + P++ +VD EE
Sbjct: 143 IPANEMHKVYCDPWTIGYDERWGTGKRLQQALVYYRSDEDDSQYSHPLD-FCPIVDTEEK 201
Query: 156 KVTQYNDREVAPIPKSEPTEYRWSKLKP-----------PFGPRLNSVTTLPTGPGFKID 204
KV + P + + ++++ + P P P +N T P G FK+
Sbjct: 202 KVIFID----IPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPIN--VTQPEGVSFKMT 255
Query: 205 GNTVKWANWVFNVGFDARVGTIISTASIYD------------------------------ 234
GN ++W+N+ F++GF+ R G ++S S D
Sbjct: 256 GNVMEWSNFKFHIGFNYREGIVLSDVSYNDHGNVRPIFHRISLSEMIVPAGSPEFPHQRK 315
Query: 235 --VDMHKY-----RRPLK---DCPPNAVFIDGYFTSQDGAPIQTPNAICIFERHTGDVMW 284
+D+ +Y PL DC ++D +F+ + G PI NA+CI E G +++
Sbjct: 316 HALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDG-LLF 374
Query: 285 RHTEAEMPGDVREVRPEVSLVVRMVATVGNYDYVIDWEFKPSGSIKLGCKVRPVEYTHID 344
+H++ V LVV + T N +Y + W F G+I+L ++ + T+I
Sbjct: 375 KHSDFRDNFATSLVTRATKLVVSQIFTAANXEYCLYWVFMQDGAIRLDIRLTGILNTYI- 433
Query: 345 QIKEDQQ----GKLVADNTIGVNHDHFLNYYLDLDIDGYANSFEKT-------------- 386
+ +D++ G V N NH H + +D IDG NS
Sbjct: 434 -LGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSSPYPLGSPEN 492
Query: 387 ----KLTVEKETAKTEFEARLKLDTKP-MEFAMVNPNKKTKI-GHXXXXXXXXXXXXXXX 440
EK T KT ++ ++ + + NPNK G
Sbjct: 493 MYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLVSTQCPPLL 552
Query: 441 XTDDDYPQIRAGFTDYNIWVTPYNKSEKYSGGNYVDQSHGDDT--LLQWT-DGNREIENK 497
+ RA + +++ V PY + Y G++V Q GD + +W DG+ I+N
Sbjct: 553 AKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSENIDNT 612
Query: 498 DIVLWYTMGIHHAPCQEDFPVMPTVSGGFELRPTNFFEYNPVLKVIP 544
DI+ ++T GI H P EDFP+MP LRP +FF NP L + P
Sbjct: 613 DILFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPGLDIQP 659
>pdb|1A2V|A Chain A, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|B Chain B, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|C Chain C, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|D Chain D, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|E Chain E, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|F Chain F, Copper Amine Oxidase From Hansenula Polymorpha
Length = 655
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 153/645 (23%), Positives = 251/645 (38%), Gaps = 116/645 (17%)
Query: 7 PLDSLSPAEFTLVQTIVKTSYPSNNLSFHYVGLDEPDKAVVYSWLSNSKIKIPRRAI--- 63
PLD LS AE VK+ + +SF+ V L EP + W PR A
Sbjct: 7 PLDPLSTAEIKAATNTVKSYFAGKKISFNTVTLREPARKAYIQWKEQGGPLPPRLAYYVI 66
Query: 64 -----------VIDLSRRSIVSDKVYTGHGFPLLTLE-----EQRTGAAPVLAYEPFKAS 107
++DL+ S++ + P+LT+E E+ P + + +
Sbjct: 67 LEAGKPGVKEGLVDLASLSVIETRALETVQ-PILTVEDLCSTEEVIRNDPAVIEQCVLSG 125
Query: 108 VKKRGLNISDVE------------SKRELKFPCFYTDQGTVNMFLRPIEGITIVVDIEEM 155
+ ++ + KR + +Y + + P++ +VD EE
Sbjct: 126 IPANEMHKVYCDPWTIGYDERWGTGKRLQQALVYYRSDEDDSQYSHPLD-FCPIVDTEEK 184
Query: 156 KVTQYNDREVAPIPKSEPTEYRWSKLKP-----------PFGPRLNSVTTLPTGPGFKID 204
KV + P + + ++++ + P P P +N T P G FK+
Sbjct: 185 KVIFID----IPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPIN--VTQPEGVSFKMT 238
Query: 205 GNTVKWANWVFNVGFDARVGTIISTASIYD------------------------------ 234
GN ++W+N+ F++GF+ R G ++S S D
Sbjct: 239 GNVMEWSNFKFHIGFNYREGIVLSDVSYNDHGNVRPIFHRISLSEMIVPYGSPEFPHQRK 298
Query: 235 --VDMHKY-----RRPLK---DCPPNAVFIDGYFTSQDGAPIQTPNAICIFERHTGDVMW 284
+D+ +Y PL DC ++D +F+ + G PI NA+CI E G +++
Sbjct: 299 HALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDG-LLF 357
Query: 285 RHTEAEMPGDVREVRPEVSLVVRMVATVGNYDYVIDWEFKPSGSIKLGCKVRPVEYTHI- 343
+H++ V LVV + T N +Y + W F G+I+L ++ + T+I
Sbjct: 358 KHSDFRDNFATSLVTRATKLVVSQIFTAANXEYCLYWVFMQDGAIRLDIRLTGILNTYIL 417
Query: 344 -DQIKEDQQGKLVADNTIGVNHDHFLNYYLDLDIDGYANSFEKT---------------- 386
D + G V N NH H + +D IDG NS
Sbjct: 418 GDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSSPYPLGSPENMY 477
Query: 387 --KLTVEKETAKTEFEARLKLDTKP-MEFAMVNPNKKTKI-GHXXXXXXXXXXXXXXXXT 442
EK T KT ++ ++ + + NPNK G
Sbjct: 478 GNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLVSTQCPPLLAK 537
Query: 443 DDDYPQIRAGFTDYNIWVTPYNKSEKYSGGNYVDQSHGDDT--LLQWT-DGNREIENKDI 499
+ RA + +++ V PY + Y G++V Q GD + +W DG+ I+N DI
Sbjct: 538 EGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDI 597
Query: 500 VLWYTMGIHHAPCQEDFPVMPTVSGGFELRPTNFFEYNPVLKVIP 544
+ ++T GI H P EDFP+MP LRP +FF NP L + P
Sbjct: 598 LFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPGLDIQP 642
>pdb|2OOV|C Chain C, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|D Chain D, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|E Chain E, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|F Chain F, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OQE|C Chain C, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|D Chain D, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|E Chain E, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|F Chain F, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
Length = 660
Score = 141 bits (356), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 152/644 (23%), Positives = 250/644 (38%), Gaps = 116/644 (18%)
Query: 8 LDSLSPAEFTLVQTIVKTSYPSNNLSFHYVGLDEPDKAVVYSWLSNSKIKIPRRAI---- 63
LD LS AE VK+ + +SF+ V L EP + W PR A
Sbjct: 13 LDPLSTAEIKAATNTVKSYFAGKKISFNTVTLREPARKAYIQWKEQGGPLPPRLAYYVIL 72
Query: 64 ----------VIDLSRRSIVSDKVYTGHGFPLLTLE-----EQRTGAAPVLAYEPFKASV 108
++DL+ S++ + P+LT+E E+ P + + + +
Sbjct: 73 EAGKPGVKEGLVDLASLSVIETRALETVQ-PILTVEDLCSTEEVIRNDPAVIEQCVLSGI 131
Query: 109 KKRGLNISDVE------------SKRELKFPCFYTDQGTVNMFLRPIEGITIVVDIEEMK 156
++ + KR + +Y + + P++ +VD EE K
Sbjct: 132 PANEMHKVYCDPWTIGYDERWGTGKRLQQALVYYRSDEDDSQYSHPLD-FCPIVDTEEKK 190
Query: 157 VTQYNDREVAPIPKSEPTEYRWSKLKP-----------PFGPRLNSVTTLPTGPGFKIDG 205
V + P + + ++++ + P P P +N T P G FK+ G
Sbjct: 191 VIFID----IPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPIN--VTQPEGVSFKMTG 244
Query: 206 NTVKWANWVFNVGFDARVGTIISTASIYD------------------------------- 234
N ++W+N+ F++GF+ R G ++S S D
Sbjct: 245 NVMEWSNFKFHIGFNYREGIVLSDVSYNDHGNVRPIFHRISLSEMIVPYGSPEFPHQRKH 304
Query: 235 -VDMHKY-----RRPLK---DCPPNAVFIDGYFTSQDGAPIQTPNAICIFERHTGDVMWR 285
+D+ +Y PL DC ++D +F+ + G PI NA+CI E G ++++
Sbjct: 305 ALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDG-LLFK 363
Query: 286 HTEAEMPGDVREVRPEVSLVVRMVATVGNYDYVIDWEFKPSGSIKLGCKVRPVEYTHI-- 343
H++ V LVV + T N +Y + W F G+I+L ++ + T+I
Sbjct: 364 HSDFRDNFATSLVTRATKLVVSQIFTAANXEYCLYWVFMQDGAIRLDIRLTGILNTYILG 423
Query: 344 DQIKEDQQGKLVADNTIGVNHDHFLNYYLDLDIDGYANSFEKT----------------- 386
D + G V N NH H + +D IDG NS
Sbjct: 424 DDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSSPYPLGSPENMYG 483
Query: 387 -KLTVEKETAKTEFEARLKLDTKP-MEFAMVNPNKKTKI-GHXXXXXXXXXXXXXXXXTD 443
EK T KT ++ ++ + + NPNK G +
Sbjct: 484 NAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLVSTQCPPLLAKE 543
Query: 444 DDYPQIRAGFTDYNIWVTPYNKSEKYSGGNYVDQSHGDDT--LLQWT-DGNREIENKDIV 500
RA + +++ V PY + Y G++V Q GD + +W DG+ I+N DI+
Sbjct: 544 GSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDIL 603
Query: 501 LWYTMGIHHAPCQEDFPVMPTVSGGFELRPTNFFEYNPVLKVIP 544
++T GI H P EDFP+MP LRP +FF NP L + P
Sbjct: 604 FFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPGLDIQP 647
>pdb|2OOV|A Chain A, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|B Chain B, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OQE|A Chain A, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|B Chain B, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
Length = 660
Score = 139 bits (349), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 151/644 (23%), Positives = 249/644 (38%), Gaps = 116/644 (18%)
Query: 8 LDSLSPAEFTLVQTIVKTSYPSNNLSFHYVGLDEPDKAVVYSWLSNSKIKIPRRAI---- 63
LD LS AE VK+ + +SF+ V L EP + W PR A
Sbjct: 13 LDPLSTAEIKAATNTVKSYFAGKKISFNTVTLREPARKAYIQWKEQGGPLPPRLAYYVIL 72
Query: 64 ----------VIDLSRRSIVSDKVYTGHGFPLLTLE-----EQRTGAAPVLAYEPFKASV 108
++DL+ S++ + P+LT+E E+ P + + + +
Sbjct: 73 EAGKPGVKEGLVDLASLSVIETRALETVQ-PILTVEDLCSTEEVIRNDPAVIEQCVLSGI 131
Query: 109 KKRGLNISDVE------------SKRELKFPCFYTDQGTVNMFLRPIEGITIVVDIEEMK 156
++ + KR + +Y + + P++ +VD EE K
Sbjct: 132 PANEMHKVYCDPWTIGYDERWGTGKRLQQALVYYRSDEDDSQYSHPLD-FCPIVDTEEKK 190
Query: 157 VTQYNDREVAPIPKSEPTEYRWSKLKP-----------PFGPRLNSVTTLPTGPGFKIDG 205
V + P + + ++++ + P P P +N T P G FK+ G
Sbjct: 191 VIFID----IPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPIN--VTQPEGVSFKMTG 244
Query: 206 NTVKWANWVFNVGFDARVGTIISTASIYD------------------------------- 234
N ++W+N+ F++GF+ R G ++S S D
Sbjct: 245 NVMEWSNFKFHIGFNYREGIVLSDVSYNDHGNVRPIFHRISLSEMIVPYGSPEFPHQRKH 304
Query: 235 -VDMHKY-----RRPLK---DCPPNAVFIDGYFTSQDGAPIQTPNAICIFERHTGDVMWR 285
+D+ +Y PL DC ++D +F+ + G PI NA+CI E G ++++
Sbjct: 305 ALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDG-LLFK 363
Query: 286 HTEAEMPGDVREVRPEVSLVVRMVATVGNYDYVIDWEFKPSGSIKLGCKVRPVEYTHI-- 343
H++ V LVV + T N +Y + W F G+I+L ++ + T+I
Sbjct: 364 HSDFRDNFATSLVTRATKLVVSQIFTAANXEYCLYWVFMQDGAIRLDIRLTGILNTYILG 423
Query: 344 DQIKEDQQGKLVADNTIGVNHDHFLNYYLDLDIDGYANSFEKT----------------- 386
D + G V N NH H + +D IDG NS
Sbjct: 424 DDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSSPYPLGSPENMYG 483
Query: 387 -KLTVEKETAKTEFEARLKLDTKP-MEFAMVNPNKKTKI-GHXXXXXXXXXXXXXXXXTD 443
EK T KT ++ ++ + + NPNK G +
Sbjct: 484 NAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLVSTQCPPLLAKE 543
Query: 444 DDYPQIRAGFTDYNIWVTPYNKSEKYSGGNYVDQSHGDDT--LLQWT-DGNREIENKDIV 500
RA + +++ V PY + Y G++V Q GD + +W DG+ I+N DI+
Sbjct: 544 GSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDIL 603
Query: 501 LWYTMGIHHAPCQEDFPVMPTVSGGFELRPTNFFEYNPVLKVIP 544
++T GI H P EDFP+ P LRP +FF NP L + P
Sbjct: 604 FFHTFGITHFPAPEDFPLXPAEPITLMLRPRHFFTENPGLDIQP 647
>pdb|3NBJ|A Chain A, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|B Chain B, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|C Chain C, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|D Chain D, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|E Chain E, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|F Chain F, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
Length = 657
Score = 135 bits (339), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 153/647 (23%), Positives = 251/647 (38%), Gaps = 118/647 (18%)
Query: 7 PLDSLSPAEFTLVQTIVKTSYPSNNLSFHYVGLDEPDKAVVYSWLSNSKIKIPRRAI--- 63
PLD LS AE VK+ + +SF+ V L EP + W PR A
Sbjct: 7 PLDPLSTAEIKAATNTVKSYFAGKKISFNTVTLREPARKAYIQWKEQGGPLPPRLAYYVI 66
Query: 64 -----------VIDLSRRSIVSDKVYTGHGFPLLTLE-----EQRTGAAPVLAYEPFKAS 107
++DL+ S++ + P+LT+E E+ P + + +
Sbjct: 67 LEAGKPGVKEGLVDLASLSVIETRALETVQ-PILTVEDLCSTEEVIRNDPAVIEQCVLSG 125
Query: 108 VKKRGLNISDVE------------SKRELKFPCFYTDQGTVNMFLRPIEGITIVVDIEEM 155
+ ++ + KR + +Y + + P++ +VD EE
Sbjct: 126 IPANEMHKVYCDPWTIGYDERWGTGKRLQQALVYYRSDEDDSQYSHPLD-FCPIVDTEEK 184
Query: 156 KVTQYNDREVAPIPKSEPTEYRWSKLKP-----------PFGPRLNSVTTLPTGPGFKID 204
KV + P + + ++++ + P P P +N T P G FK+
Sbjct: 185 KVIFID----IPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPIN--VTQPEGVSFKMT 238
Query: 205 GNTVKWANWVFNVGFDARVGTIISTASIYD------------------------------ 234
GN ++W+N+ F++GF+ R G ++S S D
Sbjct: 239 GNVMEWSNFKFHIGFNYREGIVLSDVSYNDHGNVRPIFHRISLSEMIVPFGSPEFPHQRK 298
Query: 235 --VDMHKY-----RRPLK---DCPPNAVFIDGYFTSQDGAPIQTPNAICIFERHTGDVMW 284
+D+ +Y PL DC ++D +F+ + G PI NA+CI E G +++
Sbjct: 299 HALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDG-LLF 357
Query: 285 RHTEAEMPGDVREVRPEVSLVVRMVATVGNY-DYVIDWEFKPSGSIKLGCKVRPVEYTHI 343
+H++ V LVV + T N +Y + W F G+I+L ++ + T+I
Sbjct: 358 KHSDFRDNFATSLVTRATKLVVSQIFTAANXXEYCLYWVFMQDGAIRLDIRLTGILNTYI 417
Query: 344 --DQIKEDQQGKLVADNTIGVNHDHFLNYYLDLDIDGYANSFEKT--------------- 386
D + G V N NH H + +D IDG NS
Sbjct: 418 LGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSSPYPLGSPENM 477
Query: 387 ---KLTVEKETAKTEFEARLKLDTKP-MEFAMVNPNKKTKI-GHXXXXXXXXXXXXXXXX 441
EK T KT ++ ++ + + NPNK G
Sbjct: 478 YGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLVSTQCPPLLA 537
Query: 442 TDDDYPQIRAGFTDYNIWVTPYNKSEKYSGGNYVDQSHGDDT--LLQWT-DGNREIENKD 498
+ RA + +++ V PY + Y G++V Q GD + +W DG+ I+N D
Sbjct: 538 KEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSENIDNTD 597
Query: 499 IVLWYTMGIHHAPCQEDFPV-MPTVSGGFELRPTNFFEYNPVLKVIP 544
I+ ++T GI H P EDFP+ MP LRP +FF NP L + P
Sbjct: 598 ILFFHTFGITHFPAPEDFPLXMPAEPITLMLRPRHFFTENPGLDIQP 644
>pdb|3NBB|A Chain A, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|B Chain B, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|C Chain C, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|D Chain D, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|E Chain E, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|F Chain F, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
Length = 663
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 153/647 (23%), Positives = 251/647 (38%), Gaps = 118/647 (18%)
Query: 7 PLDSLSPAEFTLVQTIVKTSYPSNNLSFHYVGLDEPDKAVVYSWLSNSKIKIPRRAI--- 63
PLD LS AE VK+ + +SF+ V L EP + W PR A
Sbjct: 10 PLDPLSTAEIKAATNTVKSYFAGKKISFNTVTLREPARKAYIQWKEQGGPLPPRLAYYVI 69
Query: 64 -----------VIDLSRRSIVSDKVYTGHGFPLLTLE-----EQRTGAAPVLAYEPFKAS 107
++DL+ S++ + P+LT+E E+ P + + +
Sbjct: 70 LEAGKPGVKEGLVDLASLSVIETRALETVQ-PILTVEDLCSTEEVIRNDPAVIEQCVLSG 128
Query: 108 VKKRGLNISDVE------------SKRELKFPCFYTDQGTVNMFLRPIEGITIVVDIEEM 155
+ ++ + KR + +Y + + P++ +VD EE
Sbjct: 129 IPANEMHKVYCDPWTIGYDERWGTGKRLQQALVYYRSDEDDSQYSHPLD-FCPIVDTEEK 187
Query: 156 KVTQYNDREVAPIPKSEPTEYRWSKLKP-----------PFGPRLNSVTTLPTGPGFKID 204
KV + P + + ++++ + P P P +N T P G FK+
Sbjct: 188 KVIFID----IPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPIN--VTQPEGVSFKMT 241
Query: 205 GNTVKWANWVFNVGFDARVGTIISTASIYD------------------------------ 234
GN ++W+N+ F++GF+ R G ++S S D
Sbjct: 242 GNVMEWSNFKFHIGFNYREGIVLSDVSYNDHGNVRPIFHRISLSEMIVPFGSPEFPHQRK 301
Query: 235 --VDMHKY-----RRPLK---DCPPNAVFIDGYFTSQDGAPIQTPNAICIFERHTGDVMW 284
+D+ +Y PL DC ++D +F+ + G PI NA+CI E G +++
Sbjct: 302 HALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDG-LLF 360
Query: 285 RHTEAEMPGDVREVRPEVSLVVRMVATVGNY-DYVIDWEFKPSGSIKLGCKVRPVEYTHI 343
+H++ V LVV + T N +Y + W F G+I+L ++ + T+I
Sbjct: 361 KHSDFRDNFATSLVTRATKLVVSQIFTAANXXEYCLYWVFMQDGAIRLDIRLTGILNTYI 420
Query: 344 --DQIKEDQQGKLVADNTIGVNHDHFLNYYLDLDIDGYANSFEKT--------------- 386
D + G V N NH H + +D IDG NS
Sbjct: 421 LGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSSPYPLGSPENM 480
Query: 387 ---KLTVEKETAKTEFEARLKLDTKP-MEFAMVNPNKKTKI-GHXXXXXXXXXXXXXXXX 441
EK T KT ++ ++ + + NPNK G
Sbjct: 481 YGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLVSTQCPPLLA 540
Query: 442 TDDDYPQIRAGFTDYNIWVTPYNKSEKYSGGNYVDQSHGDDT--LLQWT-DGNREIENKD 498
+ RA + +++ V PY + Y G++V Q GD + +W DG+ I+N D
Sbjct: 541 KEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSENIDNTD 600
Query: 499 IVLWYTMGIHHAPCQEDFPV-MPTVSGGFELRPTNFFEYNPVLKVIP 544
I+ ++T GI H P EDFP+ MP LRP +FF NP L + P
Sbjct: 601 ILFFHTFGITHFPAPEDFPLXMPAEPITLMLRPRHFFTENPGLDIQP 647
>pdb|3LOY|A Chain A, Crystal Structure Of A Copper-Containing Benzylamine
Oxidase From Hansenula Polymorpha
pdb|3LOY|B Chain B, Crystal Structure Of A Copper-Containing Benzylamine
Oxidase From Hansenula Polymorpha
pdb|3LOY|C Chain C, Crystal Structure Of A Copper-Containing Benzylamine
Oxidase From Hansenula Polymorpha
Length = 633
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 105/404 (25%), Positives = 165/404 (40%), Gaps = 56/404 (13%)
Query: 192 VTTLPTGPGFKIDGNTVKWANWVFNVGFDARVGTII------STASIYDVDMHKYRRP-- 243
+ P GP F +DG+ + W W F V R G I + +Y + + + P
Sbjct: 229 IVQQPEGPSFNVDGHKISWQGWEFFVIPTVREGFAIYDIHFKGRSVVYRLSLSEMTVPYG 288
Query: 244 -------------LKDCPPNAV---------------FIDGYFTSQDGAPIQTPNAICIF 275
L DC A ++D + +G + PN +C+
Sbjct: 289 DPRAPFHRKQAFDLGDCGFGATGNSLALGCDCLGVIKYMDCRRVNTNGDSVLIPNTVCLH 348
Query: 276 ERHTGDVMWRHTEAEMPGDVREVRPEVSLVVRMVATVGNYDYVIDWEFKPSGSIKLGCKV 335
E+ G ++++HT V R E VV+ +ATV N +Y+++ F +G I++ +
Sbjct: 349 EQ-DGGLLYKHTNYRTNVPVIARRRE--FVVQTIATVANXEYMLNIIFDQAGEIRIHVRA 405
Query: 336 RPVEYTH-IDQIKEDQQGKLVADNTIGVNHDHFLNYYLDLDIDGYANSF---------EK 385
+ T +D+ G V + H H L++ +D +DGY N+ +
Sbjct: 406 TGILSTMPLDKDVTVPWGTNVGPRVMAAYHQHMLSFRIDPAVDGYENTVVFDDVIRMEKN 465
Query: 386 TKLT---VEKETAKTEFEARLKLDTKPM---EFAMVNPNKKTKIGHXXXXXXXXXXXXXX 439
TKL V T +T E ++ P + ++N NK I
Sbjct: 466 TKLNPYNVGFVTERTVVEKPGYVEQSPFTNRSYKIINENKINPISKKPVAYKIMMPARQM 525
Query: 440 XXTDDD-YPQIRAGFTDYNIWVTPYNKSEKYSGGNYVDQSHGDDTLLQWTDGNREIENKD 498
D+D Y RA F +WVT Y +E Y+ G + +QS D L W + + N +
Sbjct: 526 LLADEDSYNNKRAQFATQQVWVTKYRDNELYAAGEFTNQSQTDTGLGVWARRDENVRNDN 585
Query: 499 IVLWYTMGIHHAPCQEDFPVMPTVSGGFELRPTNFFEYNPVLKV 542
V+W T+G H P EDFPVMP + L P FF+ NP L V
Sbjct: 586 PVVWATLGFTHIPRVEDFPVMPVEAHEIALVPFGFFDKNPALSV 629
>pdb|3HI7|A Chain A, Crystal Structure Of Human Diamine Oxidase
pdb|3HI7|B Chain B, Crystal Structure Of Human Diamine Oxidase
pdb|3HIG|A Chain A, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Berenil
pdb|3HIG|B Chain B, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Berenil
pdb|3HII|A Chain A, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Pentamidine
pdb|3HII|B Chain B, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Pentamidine
pdb|3K5T|A Chain A, Crystal Structure Of Human Diamine Oxidase In Space Group
C2221
pdb|3MPH|A Chain A, The Structure Of Human Diamine Oxidase Complexed With An
Inhibitor Aminoguanidine
pdb|3MPH|B Chain B, The Structure Of Human Diamine Oxidase Complexed With An
Inhibitor Aminoguanidine
Length = 731
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 108/417 (25%), Positives = 165/417 (39%), Gaps = 69/417 (16%)
Query: 186 GPRLNSVTTLPTGPGFKIDGNTVKWANWVFNVGFDARVGTIISTASI------YDVDMH- 238
GPRL P GP F+++GN V + W F + G + Y+V +
Sbjct: 279 GPRL----VQPHGPRFRLEGNAVLYGGWSFAFRLRSSSGLQVLNVHFGGERIAYEVSVQE 334
Query: 239 ---------------KYR-------------RPLKDCPPNAVFIDGYFTSQDGAPIQTPN 270
KY P DCP A F+D + P+ P
Sbjct: 335 AVALYGGHTPAGMQTKYLDVGWGLGSVTHELAPGIDCPETATFLDTFHYYDADDPVHYPR 394
Query: 271 AICIFERHTGDVMWRHTEAEMPGDVR---EVRPEVSLVVRMVATVGNYDYVIDWEFKPSG 327
A+C+FE TG + RH + G ++ +V LV+R +TV N DY+ D+ F P+G
Sbjct: 395 ALCLFEMPTGVPLRRHFNSNFKGGFNFYAGLKGQV-LVLRTTSTVYNXDYIWDFIFYPNG 453
Query: 328 SIKLGCKVRPVEYTHIDQIKED--QQGKLVADNTIGVNHDHFLNYYLDLDIDGYANSFEK 385
++ K+ Y H + + G + + IG H H ++Y +DLD+ G NSF+
Sbjct: 454 VME--AKMHATGYVHATFYTPEGLRHGTRLHTHLIGNIHTHLVHYRVDLDVAGTKNSFQT 511
Query: 386 TKL------------------TVEKETAKTEFEARLKLDTKPMEFAMVNPNKKTKIGHXX 427
++ T+E+ E +A + K ++ + ++ GH
Sbjct: 512 LQMKLENITNPWSPRHRVVQPTLEQTQYSWERQAAFRFKRKLPKYLLFTSPQENPWGHKR 571
Query: 428 XXXXXXXXXXXXXXTDDDYPQIRAGFTDYNIWVTPYNKSEKYSGGNYVDQSHGDDTLL-- 485
+ + Y + VT Y +SE S Y D ++
Sbjct: 572 SYRLQIHSMADQVLPPGWQEEQAITWARYPLAVTKYRESELCSSSIYHQNDPWDPPVVFE 631
Query: 486 QWTDGNREIENKDIVLWYTMGIHHAPCQEDFP--VMPTVSGGFELRPTNFFEYNPVL 540
Q+ N IEN+D+V W T+G H P ED P P S GF LRP NFF +P L
Sbjct: 632 QFLHNNENIENEDLVAWVTVGFLHIPHSEDIPNTATPGNSVGFLLRPFNFFPEDPSL 688
>pdb|3ALA|A Chain A, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|B Chain B, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|C Chain C, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|D Chain D, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|E Chain E, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|F Chain F, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|G Chain G, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
Length = 748
Score = 108 bits (270), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 102/402 (25%), Positives = 161/402 (40%), Gaps = 63/402 (15%)
Query: 196 PTGPGFKIDGNTVKWANWVFNVGFDARVG-----------------TIISTASIYD---- 234
P GP F + G+ V + W F+ G A G ++ +IY
Sbjct: 303 PQGPRFSVQGSRVASSLWTFSFGLGAFSGPRIFDVRFQGERLVYEISLQEALAIYGGNSP 362
Query: 235 -----------VDMHKYRRPLK---DCPPNAVFIDGYFTSQDGAPIQTPNAICIFERHTG 280
M KY PL DCP A ++D +F + AP +A C+FE++ G
Sbjct: 363 AAMTTRYVDGGFGMGKYTTPLTRGVDCPYLATYVDWHFLLESQAPKTIRDAFCVFEQNQG 422
Query: 281 DVMWRHTEAEMPGDVREVRPEVSLVVRMVATVGNYDYVIDWEFKPSGSIKLGCKVRPVEY 340
+ RH +++ E LVVR ++T+ N DYV D F PSG+I++
Sbjct: 423 LPLRRH-HSDLYSHYFGGLAETVLVVRSMSTLLNXDYVWDTVFHPSGAIEIRFYATGYIS 481
Query: 341 THIDQIKEDQQGKLVADNTIGVNHDHFLNYYLDLDIDGYAN------------------S 382
+ + G V+++T+G H H ++ +DLD+ G N
Sbjct: 482 SAFLFGATGKYGNQVSEHTLGTVHTHSAHFKVDLDVAGLENWVWAEDMVFVPMAVPWSPE 541
Query: 383 FEKTKLTVEKETAKTEFEARLKLDTKPMEFAMVNPNKKTKIGHXXXXXXXXXXXXXXXXT 442
+ +L V ++ + E +A + + + + N K GH
Sbjct: 542 HQLQRLQVTRKLLEMEEQAAFLVGSATPRYLYLASNHSNKWGHPRGYRIQMLSFAGEPLP 601
Query: 443 DDDYPQIRAGFT--DYNIWVTPYNKSEKYSGGNYVDQSHGDDTLLQWTD--GNREIENKD 498
+ + GF+ Y + VT K E+ S + +Q+ + ++D N I KD
Sbjct: 602 QNS--SMARGFSWERYQLAVT-QRKEEEPSSSSVFNQNDPWAPTVDFSDFINNETIAGKD 658
Query: 499 IVLWYTMGIHHAPCQEDFPVMPTVSG--GFELRPTNFFEYNP 538
+V W T G H P ED P TV GF LRP NFF+ +P
Sbjct: 659 LVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDEDP 700
>pdb|1US1|A Chain A, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1US1|B Chain B, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1PU4|A Chain A, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1PU4|B Chain B, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|2Y73|A Chain A, The Native Structures Of Soluble Human Primary Amine
Oxidase Aoc3
pdb|2Y73|B Chain B, The Native Structures Of Soluble Human Primary Amine
Oxidase Aoc3
pdb|2Y74|A Chain A, The Crystal Structure Of Human Soluble Primary Amine
Oxidase Aoc3 In The Off-Copper Conformation
pdb|2Y74|B Chain B, The Crystal Structure Of Human Soluble Primary Amine
Oxidase Aoc3 In The Off-Copper Conformation
Length = 763
Score = 108 bits (269), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 102/402 (25%), Positives = 161/402 (40%), Gaps = 63/402 (15%)
Query: 196 PTGPGFKIDGNTVKWANWVFNVGFDARVG-----------------TIISTASIYD---- 234
P GP F + G+ V + W F+ G A G ++ +IY
Sbjct: 318 PQGPRFSVQGSRVASSLWTFSFGLGAFSGPRIFDVRFQGERLVYEISLQEALAIYGGNSP 377
Query: 235 -----------VDMHKYRRPLK---DCPPNAVFIDGYFTSQDGAPIQTPNAICIFERHTG 280
M KY PL DCP A ++D +F + AP +A C+FE++ G
Sbjct: 378 AAMTTRYVDGGFGMGKYTTPLTRGVDCPYLATYVDWHFLLESQAPKTIRDAFCVFEQNQG 437
Query: 281 DVMWRHTEAEMPGDVREVRPEVSLVVRMVATVGNYDYVIDWEFKPSGSIKLGCKVRPVEY 340
+ RH +++ E LVVR ++T+ N DYV D F PSG+I++
Sbjct: 438 LPLRRH-HSDLYSHYFGGLAETVLVVRSMSTLLNXDYVWDTVFHPSGAIEIRFYATGYIS 496
Query: 341 THIDQIKEDQQGKLVADNTIGVNHDHFLNYYLDLDIDGYAN------------------S 382
+ + G V+++T+G H H ++ +DLD+ G N
Sbjct: 497 SAFLFGATGKYGNQVSEHTLGTVHTHSAHFKVDLDVAGLENWVWAEDMVFVPMAVPWSPE 556
Query: 383 FEKTKLTVEKETAKTEFEARLKLDTKPMEFAMVNPNKKTKIGHXXXXXXXXXXXXXXXXT 442
+ +L V ++ + E +A + + + + N K GH
Sbjct: 557 HQLQRLQVTRKLLEMEEQAAFLVGSATPRYLYLASNHSNKWGHPRGYRIQMLSFAGEPLP 616
Query: 443 DDDYPQIRAGFT--DYNIWVTPYNKSEKYSGGNYVDQSHGDDTLLQWTD--GNREIENKD 498
+ + GF+ Y + VT K E+ S + +Q+ + ++D N I KD
Sbjct: 617 QNS--SMARGFSWERYQLAVT-QRKEEEPSSSSVFNQNDPWAPTVDFSDFINNETIAGKD 673
Query: 499 IVLWYTMGIHHAPCQEDFPVMPTVSG--GFELRPTNFFEYNP 538
+V W T G H P ED P TV GF LRP NFF+ +P
Sbjct: 674 LVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDEDP 715
>pdb|2C10|A Chain A, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|B Chain B, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|C Chain C, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|D Chain D, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|A Chain A, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|B Chain B, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|C Chain C, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|D Chain D, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
Length = 735
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 102/402 (25%), Positives = 161/402 (40%), Gaps = 63/402 (15%)
Query: 196 PTGPGFKIDGNTVKWANWVFNVGFDARVG-----------------TIISTASIYD---- 234
P GP F + G+ V + W F+ G A G ++ +IY
Sbjct: 290 PQGPRFSVQGSRVASSLWTFSFGLGAFSGPRIFDVRFQGERLVYEISLQEALAIYGGNSP 349
Query: 235 -----------VDMHKYRRPLK---DCPPNAVFIDGYFTSQDGAPIQTPNAICIFERHTG 280
M KY PL DCP A ++D +F + AP +A C+FE++ G
Sbjct: 350 AAMTTRYVDGGFGMGKYTTPLTRGVDCPYLATYVDWHFLLESQAPKTIRDAFCVFEQNQG 409
Query: 281 DVMWRHTEAEMPGDVREVRPEVSLVVRMVATVGNYDYVIDWEFKPSGSIKLGCKVRPVEY 340
+ RH +++ E LVVR ++T+ N DYV D F PSG+I++
Sbjct: 410 LPLRRH-HSDLYSHYFGGLAETVLVVRSMSTLLNXDYVWDTVFHPSGAIEIRFYATGYIS 468
Query: 341 THIDQIKEDQQGKLVADNTIGVNHDHFLNYYLDLDIDGYAN------------------S 382
+ + G V+++T+G H H ++ +DLD+ G N
Sbjct: 469 SAFLFGATGKYGNQVSEHTLGTVHTHSAHFKVDLDVAGLENWVWAEDMVFVPMAVPWSPE 528
Query: 383 FEKTKLTVEKETAKTEFEARLKLDTKPMEFAMVNPNKKTKIGHXXXXXXXXXXXXXXXXT 442
+ +L V ++ + E +A + + + + N K GH
Sbjct: 529 HQLQRLQVTRKLLEMEEQAAFLVGSATPRYLYLASNHSNKWGHPRGYRIQMLSFAGEPLP 588
Query: 443 DDDYPQIRAGFT--DYNIWVTPYNKSEKYSGGNYVDQSHGDDTLLQWTD--GNREIENKD 498
+ + GF+ Y + VT K E+ S + +Q+ + ++D N I KD
Sbjct: 589 QNS--SMARGFSWERYQLAVT-QRKEEEPSSSSVFNQNDPWAPTVDFSDFINNETIAGKD 645
Query: 499 IVLWYTMGIHHAPCQEDFPVMPTVSG--GFELRPTNFFEYNP 538
+V W T G H P ED P TV GF LRP NFF+ +P
Sbjct: 646 LVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDEDP 687
>pdb|1TU5|A Chain A, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase
pdb|1TU5|B Chain B, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase
pdb|2PNC|A Chain A, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase In Complex With Clonidine
pdb|2PNC|B Chain B, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase In Complex With Clonidine
Length = 746
Score = 101 bits (252), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 99/402 (24%), Positives = 156/402 (38%), Gaps = 59/402 (14%)
Query: 196 PTGPGFKIDGNTVKWANWVFNVGFDARVG-----------------TIISTASIYD---- 234
P GP F + GN V + W F+ G A G ++ ++Y
Sbjct: 301 PQGPRFSVQGNRVASSLWTFSFGLGAFSGPRVFDVRFQGERLAYEISLQEAGAVYGGNTP 360
Query: 235 -----------VDMHKYRRPL---KDCPPNAVFIDGYFTSQDGAPIQTPNAICIFERHTG 280
M + PL DCP A ++D +F + P +A C+FE++ G
Sbjct: 361 AAMLTRYMDSGFGMGYFATPLIRGVDCPYLATYMDWHFVVESQTPKTLHDAFCVFEQNKG 420
Query: 281 DVMWRHTEAEMPGDVREVRPEVSLVVRMVATVGNYDYVIDWEFKPSGSIKLGCKVRPVEY 340
+ RH + V V LV R V+T+ N DYV D F P+G+I++
Sbjct: 421 LPLRRHHSDFLSHYFGGVAQTV-LVFRSVSTMLNXDYVWDMVFYPNGAIEVKLHATGYIS 479
Query: 341 THIDQIKEDQQGKLVADNTIGVNHDHFLNYYLDLDIDGYAN-------SFEKT------- 386
+ + G V ++T+G H H +Y +DLD+ G N +F T
Sbjct: 480 SAFLFGAARRYGNQVGEHTLGPVHTHSAHYKVDLDVGGLENWVWAEDMAFVPTAIPWSPE 539
Query: 387 ----KLTVEKETAKTEFEARLKLDTKPMEFAMVNPNKKTKIGHXXXXXXXXXXXXXXXXT 442
+L V ++ +TE +A L + + + K GH
Sbjct: 540 HQIQRLQVTRKQLETEEQAAFPLGGASPRYLYLASKQSNKWGHPRGYRIQTVSFAGGPMP 599
Query: 443 DDDYPQIRAGFTDYNIWVTPYNKSEKYSGGNYVDQSHGDDTLLQWTD--GNREIENKDIV 500
+ + + Y + +T ++E S + +Q+ + ++D N I KD+V
Sbjct: 600 QNSPMERAFSWGRYQLAITQRKETEP-SSSSVFNQNDPWTPTVDFSDFINNETIAGKDLV 658
Query: 501 LWYTMGIHHAPCQEDFPVMPTVSG--GFELRPTNFFEYNPVL 540
W T G H P ED P TV GF LRP NFF+ P +
Sbjct: 659 AWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDQEPSM 700
>pdb|3PGB|A Chain A, Crystal Structure Of Aspergillus Nidulans Amine Oxidase
Length = 797
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 83/322 (25%), Positives = 131/322 (40%), Gaps = 31/322 (9%)
Query: 246 DCPPNAVFIDGYFTSQDGAPIQTPNAICIFERHTGDVMWRHTEAEMPGDVREVRPEVSLV 305
DCP A +++ F + +++C+FE M RH+ +E V V
Sbjct: 420 DCPSYASYLNTSFYKDEETHTHV-DSLCLFEFDADYPMARHSTSEF----VSVTKNVYFT 474
Query: 306 VRMVATVGNYDYVIDWEFKPSGSIKLGCKVRPVEYTHIDQIKEDQQ-GKLVADNTIGVNH 364
+R V+T+GN DY+ + F G+I G +VR Y +Q G + D+ G H
Sbjct: 475 LRSVSTIGNXDYMFSYNFHMDGTI--GVEVRASGYIQSAYYANNQDFGYQIHDSLSGSMH 532
Query: 365 DHFLNYYLDLDIDGYANSFE----------------KTKLTVE--KETAKTEFEARLKLD 406
DH LN+ D DI G N+ E KT+ T++ + +E EARL
Sbjct: 533 DHVLNFKADFDILGPNNTIELVSVVPVTKQFSWSGNKTRNTMQLGRSFIHSEDEARLNWG 592
Query: 407 -TKPMEFAMVNPNKKTKIGHXXXXXXXXXXXXXXXXTDDDYPQIRAG-FTDYNIWVTPYN 464
+ +VN +K K G + + A + +Y++ VT +
Sbjct: 593 FNGQTQLHVVNQDKPNKFGEPRGYRILPSAGTAHLTVLNSSNLVHAAHWAEYDVQVTRQH 652
Query: 465 KSEKYSGGNYVDQSHGDDTLLQWTDGNREIENK-DIVLWYTMGIHHAPCQEDFP--VMPT 521
E S Y Q + + T N E N+ D+V+W +G+HH P D P V T
Sbjct: 653 DFEPTSAHPYNSQDIHNPPVDFSTFFNGESLNQTDLVVWLNLGMHHVPHTGDLPNTVFTT 712
Query: 522 VSGGFELRPTNFFEYNPVLKVI 543
G P N+ +P + +
Sbjct: 713 AHSGVAFTPLNYLPGDPSRETV 734
>pdb|1N9E|A Chain A, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
pdb|1N9E|B Chain B, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
pdb|1N9E|C Chain C, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
pdb|1N9E|D Chain D, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
Length = 787
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 65/149 (43%), Gaps = 16/149 (10%)
Query: 243 PLKDCPPNAVFIDGYFTSQDGAPIQTPN---AICIFERHTGDVMWRHTEAEMPGDVREVR 299
P DCP A GYFT+ + N + C+FE + RHT A +
Sbjct: 411 PGYDCPATA----GYFTTDTFEYDEFYNRTLSYCVFENQEDYSLLRHTGASYSA----IT 462
Query: 300 PEVSLVVRMVATVGNYDYVIDWEFKPSGSIKLGCKVRPVEYTHIDQIKEDQQ---GKLVA 356
+L VR ++T+GN DY ++F G++++ VR Y + G +
Sbjct: 463 QNPTLNVRFISTIGNXDYNFLYKFFLDGTLEV--SVRAAGYIQAGYWNPETSAPYGLKIH 520
Query: 357 DNTIGVNHDHFLNYYLDLDIDGYANSFEK 385
D G HDH LNY +DLD+ G N K
Sbjct: 521 DVLSGSFHDHVLNYKVDLDVGGTKNRASK 549
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 491 NREIENKDIVLWYTMGIHHAPCQEDFP--VMPTVSGGFELRPTNFFE 535
+ ++ +DIV W +G+HH P D P + T F L P N+F+
Sbjct: 676 DESLDGEDIVAWVNLGLHHLPNSNDLPNTIFSTAHASFMLTPFNYFD 722
>pdb|1RKY|A Chain A, Pplo + Xe
pdb|1W7C|A Chain A, Pplo At 1.23 Angstroms
Length = 747
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 64/145 (44%), Gaps = 16/145 (11%)
Query: 243 PLKDCPPNAVFIDGYFTSQDGAPIQTPN---AICIFERHTGDVMWRHTEAEMPGDVREVR 299
P DCP A GYFT+ + N + C+FE + RHT A +
Sbjct: 371 PGYDCPSTA----GYFTTDTFEYDEFYNRTLSYCVFENQEDYSLLRHTGASYSA----IT 422
Query: 300 PEVSLVVRMVATVGNYDYVIDWEFKPSGSIKLGCKVRPVEYTHIDQIKEDQQ---GKLVA 356
+L VR ++T+GN DY ++F G++++ VR Y + G +
Sbjct: 423 QNPTLNVRFISTIGNXDYNFLYKFFLDGTLEV--SVRAAGYIQAGYWNPETSAPYGLKIH 480
Query: 357 DNTIGVNHDHFLNYYLDLDIDGYAN 381
D G HDH LNY +DLD+ G N
Sbjct: 481 DVLSGSFHDHVLNYKVDLDVGGTKN 505
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 491 NREIENKDIVLWYTMGIHHAPCQEDFP--VMPTVSGGFELRPTNFFE 535
+ ++ +DIV W +G+HH P D P + T F L P N+F+
Sbjct: 636 DESLDGEDIVAWVNLGLHHLPNSNDLPNTIFSTAHASFMLTPFNYFD 682
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,826,950
Number of Sequences: 62578
Number of extensions: 849248
Number of successful extensions: 1890
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1674
Number of HSP's gapped (non-prelim): 76
length of query: 567
length of database: 14,973,337
effective HSP length: 104
effective length of query: 463
effective length of database: 8,465,225
effective search space: 3919399175
effective search space used: 3919399175
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)