Query 040402
Match_columns 567
No_of_seqs 159 out of 728
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 08:04:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040402.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040402hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11504 tynA tyramine oxidase 100.0 6E-162 1E-166 1337.9 60.4 539 4-554 12-643 (647)
2 PLN02566 amine oxidase (copper 100.0 9E-157 2E-161 1296.1 59.9 526 3-540 19-645 (646)
3 PRK14696 tynA tyramine oxidase 100.0 2E-156 5E-161 1303.4 60.1 527 4-546 86-720 (721)
4 COG3733 TynA Cu2+-containing a 100.0 2E-152 4E-157 1200.7 50.4 529 5-546 29-653 (654)
5 KOG1186 Copper amine oxidase [ 100.0 6E-135 1E-139 1097.1 45.6 546 4-559 26-669 (670)
6 PF01179 Cu_amine_oxid: Copper 100.0 1E-121 2E-126 980.8 27.5 352 191-547 1-413 (413)
7 PF02728 Cu_amine_oxidN3: Copp 99.7 2.2E-18 4.7E-23 151.7 8.0 85 84-169 1-101 (101)
8 PF02727 Cu_amine_oxidN2: Copp 99.6 2.4E-16 5.2E-21 135.0 2.5 59 6-65 1-61 (86)
9 PF04270 Strep_his_triad: Stre 55.4 6.5 0.00014 31.1 1.2 19 7-25 34-52 (53)
10 PF11148 DUF2922: Protein of u 26.5 66 0.0014 26.3 2.8 25 3-27 18-42 (69)
No 1
>PRK11504 tynA tyramine oxidase; Provisional
Probab=100.00 E-value=5.6e-162 Score=1337.95 Aligned_cols=539 Identities=35% Similarity=0.587 Sum_probs=503.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCC-CCCeeEEEEEccCCChHHhhhhhcCCCCCCCceEEE--------------EECC
Q 040402 4 CHRPLDSLSPAEFTLVQTIVKTSYP-SNNLSFHYVGLDEPDKAVVYSWLSNSKIKIPRRAIV--------------IDLS 68 (567)
Q Consensus 4 ~~HPldpLs~~Ei~~a~~~l~~~~~-~~~~~f~~I~L~EP~K~~vl~~l~~~~~~p~R~A~v--------------V~L~ 68 (567)
++|||||||++||++|++||+++.+ +..++|.+|+|.||+|++|++|++|.+ ++|+|+| |||+
T Consensus 12 ~~HPLdpLt~~Ei~~a~~iv~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~g~~--~~R~a~v~~~~~~~~~~~e~vVdL~ 89 (647)
T PRK11504 12 VSHPLDPLTAAEIEAAVAILRAEGLLGESTRFVSIELAEPPKAEVLAFDPGDP--IDRRAFVVLYDRATGKTYEAVVSLT 89 (647)
T ss_pred CCCCCCCCCHHHHHHHHHHHHhccccCCceEEEEeeccCCCHHHHHhhhcCCC--CCcEEEEEEEECCCCcEEEEEEECC
Confidence 4699999999999999999999875 689999999999999999999999864 4799999 8899
Q ss_pred CCcEEEEEEecCCCCCCCCHHHHHHHHhhhccCHHHHHHHHHcCCC-cccc--------------c-CceEEEEEEEeee
Q 040402 69 RRSIVSDKVYTGHGFPLLTLEEQRTGAAPVLAYEPFKASVKKRGLN-ISDV--------------E-SKRELKFPCFYTD 132 (567)
Q Consensus 69 ~~~v~~~~~~~~~~~p~~~~eE~~~~~~~~~~~p~~~~a~~~rgl~-~~~v--------------~-~rR~~~~~~~~~~ 132 (567)
+++|++++.++ ++||+++.+||.+++++|++||.|++||++|||+ +++| + +||++|++||+|.
T Consensus 90 ~~~V~~~~~~~-~~~p~~~~~e~~~~e~~~~~dp~~~~ai~~rgl~~~~~V~~dpw~~G~~~~~~~~~~Rl~~~~~~~r~ 168 (647)
T PRK11504 90 AGEVVSWEEIP-GVQPPILLEEFEECEEVVRADPRWQAALAKRGITDFDLVMVDPWSAGYFGEPEERGRRLARGLAFVRA 168 (647)
T ss_pred CCEEEEEEECC-CccCCcCHHHHHHHHHHHhcCHHHHHHHHHcCCCCcceEEEcCccccccCCCCcCCceEEEEEEEEec
Confidence 99999998876 6799999999999999999999999999999995 5656 2 5999999999998
Q ss_pred CCCCCcccCCCCCeEEEEecCCceEEEEeCCccccCCCCCCCCCCcCCCCCCCCCCCCCCcc-CCCCCeeEEeCcEEeec
Q 040402 133 QGTVNMFLRPIEGITIVVDIEEMKVTQYNDREVAPIPKSEPTEYRWSKLKPPFGPRLNSVTT-LPTGPGFKIDGNTVKWA 211 (567)
Q Consensus 133 ~~~~n~yahPi~gl~~~vD~~~~~v~~i~d~~~~~~p~~~~~~y~~~~~~~~~r~~~kP~~i-qPeG~sf~v~g~~V~w~ 211 (567)
++++|+||||||||.++||++++||++|+|.+..|+|+.+ ++|.++++. ++|+++||++| ||||+||+|+|++|+||
T Consensus 169 ~~~~n~Ya~Pi~G~~~vvDl~~~~vv~i~d~g~~p~p~~~-~~Y~~~~~~-~~r~dlkPl~i~QPeG~sF~v~g~~V~W~ 246 (647)
T PRK11504 169 DPGDNGYARPIEGLVAVVDLNTMEVLRVEDHGVVPIPAED-GNYDPEFIP-PLRTDLKPLEITQPEGPSFTVDGNEVEWQ 246 (647)
T ss_pred CCCccccccccCceEEEEECCCCEEEEEecCCCCCCCCCC-CCCChhHcc-ccccCCCCcceeCCCCCcEEEcCCEEEEC
Confidence 8889999999999999999999999999998877888765 699988764 78999999999 99999999999999999
Q ss_pred ceEEEEeecCCccceEEccEEecCCCCcccC------------------------------------------CCCCCCC
Q 040402 212 NWVFNVGFDARVGTIISTASIYDVDMHKYRR------------------------------------------PLKDCPP 249 (567)
Q Consensus 212 ~W~f~~~f~~reGl~L~~v~~~d~r~~~~R~------------------------------------------~G~DCpg 249 (567)
||+||+|||+||||+||||+|+| .|..|+ +||||||
T Consensus 247 ~W~f~vgf~~reGlvL~dv~y~d--~g~~R~v~YrlslsEm~VPYgdp~p~~~~k~~fD~GeyG~G~~an~L~lGcDCpg 324 (647)
T PRK11504 247 KWSFRVGFNPREGLVLHQVSYDD--GGRERPILYRASLSEMVVPYGDPSPTHYWKNAFDAGEYGLGRLANSLELGCDCLG 324 (647)
T ss_pred CcEEEEecCCCCceEEEEEEEcC--CCCcceEEEEeeeeeeeeecCCCCcchhhceeeeccccCCcccccccccCCCCCC
Confidence 99999999999999999999998 222222 9999999
Q ss_pred CcEEeeeEEEcCCCceeEeCcceEEeeecCCCccccccccCCCCceeeeeeceEEEEEEEEEeeccceEEEEEEeeCccE
Q 040402 250 NAVFIDGYFTSQDGAPIQTPNAICIFERHTGDVMWRHTEAEMPGDVREVRPEVSLVVRMVATVGNYDYVIDWEFKPSGSI 329 (567)
Q Consensus 250 ~a~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~~~~~r~~~~LVvr~i~TVgNYdYi~~~~F~~dGtI 329 (567)
+|+|||+++.+++|+|++++|||||||+| +|+||||++++++.. .+|++++||||+|+|||||||||+|+|||||+|
T Consensus 325 ~i~Y~D~~~~~~~G~p~~~~naICihE~D-~GilwkHt~~r~~~~--~v~r~r~LVvr~I~TVgNYdYi~~w~F~qdG~I 401 (647)
T PRK11504 325 EIRYFDAVLADSDGEPYTIKNAICMHEED-YGILWKHTDFRTGSA--EVRRSRRLVISFFATVGNYDYGFYWYFYQDGTI 401 (647)
T ss_pred CCEEcceEEecCCCCeEEecCEEEEeeec-CCeeeeeeccCCCcE--EEEeccEEEEEEEEecccccEEEEEEEecCceE
Confidence 99999999999999999999999999999 779999999997665 344555999999999999999999999999999
Q ss_pred EEEEEEeeeEEeeccccc---cCCCCccccCCcccccccEEEeeeeeecccCCCCeEEEEEE---------------EEE
Q 040402 330 KLGCKVRPVEYTHIDQIK---EDQQGKLVADNTIGVNHDHFLNYYLDLDIDGYANSFEKTKL---------------TVE 391 (567)
Q Consensus 330 e~~v~v~atg~~~~~~~~---~~~yG~~V~~~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~---------------~~~ 391 (567)
|++| +||||+++.... +.+||++|+|+++|++|||+|||||||||||.+|||++.|+ +++
T Consensus 402 e~eV--~aTGil~t~~~~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIDG~~Nsv~~~d~~~~p~~~~np~g~~~~~~ 479 (647)
T PRK11504 402 EFEV--KLTGIVFTAAVPPGETPPYGTLVAPGLYAPNHQHFFNARLDMDVDGPGNSVYEVNSVPVPMGPDNPHGNAFYTR 479 (647)
T ss_pred EEEE--EeeeEEEeeeeCCCccCCCcceecCCcccccceEEEEEEEcccccCCCceEEEEEeEecCCCCCCccceEEEEE
Confidence 9987 999999987662 46899999999999999999999999999999999999998 889
Q ss_pred EEeeeChHhHhhccCC-CCcEEEEEcCCCCCCCCCceeEEEecCCCcCCCCCCCCcccccccccceeeEEeecCCCCCCC
Q 040402 392 KETAKTEFEARLKLDT-KPMEFAMVNPNKKTKIGHPVGYRLLPGLVVGPLLTDDDYPQIRAGFTDYNIWVTPYNKSEKYS 470 (567)
Q Consensus 392 ~~~~~tE~~a~~~~~~-~~r~~~i~N~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~~~E~~a 470 (567)
+++++||++|++++++ ++|+|+|+|++++|++|+|+||||+|++++++|++++|+..+||+||+||||||+|+|+|+||
T Consensus 480 ~t~l~tE~~a~~~~~~~~~R~~~ivN~~~~N~~G~pvgYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~a 559 (647)
T PRK11504 480 ETLLETESEAARDADPSTGRYWKIVNPNKKNRLGEPVAYKLVPGGNPPLLADPGSSIRQRAGFATHHLWVTPYDPDERYA 559 (647)
T ss_pred EEEecchhhhhhccCCCCccEEEEECCCCcCCCCCeeeEEEccCCCccccCCCCchhhhcchhhhCcEEEeccCCCcccc
Confidence 9999999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCccCCCCCCChhhhccCCCceeeCCeEEEEEeccccCCCCCCCCCccceeeeEEEEeCCCCCCCCcccCCCCCCCCC
Q 040402 471 GGNYVDQSHGDDTLLQWTDGNREIENKDIVLWYTMGIHHAPCQEDFPVMPTVSGGFELRPTNFFEYNPVLKVIPPKHVQW 550 (567)
Q Consensus 471 sg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~H~Pr~ED~Pvmp~~~~~f~L~P~nFFd~nP~ldvp~~~~~~~ 550 (567)
||+|++|+.+++||++|+++||+|+|+|||+|||||+||+||+|||||||++++||+|||+|||++||+||||++.++..
T Consensus 560 ag~y~~Qs~~~~gl~~~~~~~~~i~~~DiVlW~t~G~~HvPr~ED~PvMP~~~~gf~L~P~nFF~~NPaldvp~s~~~~~ 639 (647)
T PRK11504 560 AGDYPNQSAGGDGLPAYIAADRSIENTDVVLWYTFGITHVPRPEDWPVMPVDYAGFKLKPVGFFDRNPALDLPPEPPAAC 639 (647)
T ss_pred CCCCcccCCCCCCHHHHhcCCCccccCceEEEEecCcccCCChhhCCCCccceEEEEEEcCCCCCCCccccCCCcccccc
Confidence 99999999998999999999999999999999999999999999999999999999999999999999999999988655
Q ss_pred CCCC
Q 040402 551 PNCT 554 (567)
Q Consensus 551 ~~~~ 554 (567)
++|.
T Consensus 640 ~~~~ 643 (647)
T PRK11504 640 HEHG 643 (647)
T ss_pred cccC
Confidence 5443
No 2
>PLN02566 amine oxidase (copper-containing)
Probab=100.00 E-value=9.4e-157 Score=1296.10 Aligned_cols=526 Identities=57% Similarity=0.987 Sum_probs=487.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCC--CCeeEEEEEccCCChHHhhhhhcCCC---CCCCceEEE------------E
Q 040402 3 SCHRPLDSLSPAEFTLVQTIVKTSYPS--NNLSFHYVGLDEPDKAVVYSWLSNSK---IKIPRRAIV------------I 65 (567)
Q Consensus 3 s~~HPldpLs~~Ei~~a~~~l~~~~~~--~~~~f~~I~L~EP~K~~vl~~l~~~~---~~p~R~A~v------------V 65 (567)
+++|||||||++||++|++||+++.++ ..++|++|+|.||+|++|++|+++.. +.|+|+|+| |
T Consensus 19 ~~~HPLdpLs~~Ei~~a~~iv~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~~~~~~p~R~a~v~~~~~~~~~e~vV 98 (646)
T PLN02566 19 SLYHPLDPLNPQEINKIRLIVQKSHLGNLPNLTFHFLDLEEPEKRDVLKWLSSNPSNKSPPPRRAKVVVRAGGETYELIV 98 (646)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHhhccCCCCceEEEEEEccCCChHHHHhhhhcccCCCCCCCcEEEEEEecCCCEEEEEE
Confidence 457999999999999999999998753 57999999999999999999998632 346899999 8
Q ss_pred ECCCCcEEEEEEecCCCCCCCCHHHHHHHHhhhccCHHHHHHHHHcCCCcccc-------------cCceEEEEEEEeee
Q 040402 66 DLSRRSIVSDKVYTGHGFPLLTLEEQRTGAAPVLAYEPFKASVKKRGLNISDV-------------ESKRELKFPCFYTD 132 (567)
Q Consensus 66 ~L~~~~v~~~~~~~~~~~p~~~~eE~~~~~~~~~~~p~~~~a~~~rgl~~~~v-------------~~rR~~~~~~~~~~ 132 (567)
||++++|++++.+++.|||+++.|||.+++++|++||.|+|||++|||+.++| ++||++|++||+|
T Consensus 99 dl~~~~v~~~~~~~g~G~p~~~~~e~~~~e~~~~~dp~~~~a~~~rgl~~~~V~~dpw~~G~~~~~~~~R~~q~~~y~r- 177 (646)
T PLN02566 99 DLATGSITSSRVYTGHGYPPLTFIELFQASKLPLKYPKFKKSILRRGLNISEVSCIPFTVGWYGETVTKRALKISCFYR- 177 (646)
T ss_pred ECCCCEEEEEEEcCCCCcCCcCHHHHHHHHHHHhcCHHHHHHHHHcCCCcceEEEeCcccccCCCCCCcEEEEEEEEEc-
Confidence 99999999999887666999999999999999999999999999999976656 3599999999999
Q ss_pred CCCCCcccCCCCCeEEEEecCCceEEEEeCCccccCCCCCCCCCCcCCCCCCCCCCCCCCcc-CCC-CCeeEEeCcEEee
Q 040402 133 QGTVNMFLRPIEGITIVVDIEEMKVTQYNDREVAPIPKSEPTEYRWSKLKPPFGPRLNSVTT-LPT-GPGFKIDGNTVKW 210 (567)
Q Consensus 133 ~~~~n~yahPi~gl~~~vD~~~~~v~~i~d~~~~~~p~~~~~~y~~~~~~~~~r~~~kP~~i-qPe-G~sf~v~g~~V~w 210 (567)
++++|+||||||||.++||++++||++|+|.+..|+|+..+. ++|+++||+.| ||+ |+||+|+|++|+|
T Consensus 178 ~~~~N~Ya~Pl~G~~~vvDl~~~~vi~i~d~~~~p~p~~~~~---------~~R~d~kPl~i~QPegG~sF~v~G~~V~W 248 (646)
T PLN02566 178 GGSVNVFARPIEGISILIDVDSMQIIKYSDRFRAPLPKAEGT---------DFRTKHKPFSFPCNVSDSGFTILGHRVKW 248 (646)
T ss_pred CCCcccccCccCCcEEEEECCCCEEEEEECCCCCccCCCCCC---------CCCcCCCCccccCCCCCCcEEEcCCEEEe
Confidence 889999999999999999999999999998765566654331 36899999999 999 5999999999999
Q ss_pred cceEEEEeecCCccceEEccEEecCCCCcccC------------------------------------------CCCCCC
Q 040402 211 ANWVFNVGFDARVGTIISTASIYDVDMHKYRR------------------------------------------PLKDCP 248 (567)
Q Consensus 211 ~~W~f~~~f~~reGl~L~~v~~~d~r~~~~R~------------------------------------------~G~DCp 248 (567)
|||+||+|||+|||||||||+|+|+++++.|+ +|||||
T Consensus 249 ~~W~f~vgf~~reGlvL~~v~~~D~~~~~~R~v~YrlSlsEm~VPYgDP~~~~~~k~~fD~GeyG~G~~a~~L~lGcDCp 328 (646)
T PLN02566 249 ANWDFHVGFDARAGVTISTASVFDAKVKRFRRVLYRGHVSETFVPYMDPTSEWYFRTFMDIGEFGFGRSAVTLQPLIDCP 328 (646)
T ss_pred cCcEEEEecCCCcceEEEeEEEeccCCCcceeEEEEeeeeeeEEecCCCCccccccceeeccccCccccccccccCCCCC
Confidence 99999999999999999999999988776544 899999
Q ss_pred CCcEEeeeEEEcCCCceeEeCcceEEeeecCCCccccccccCCCCc-eeeeeeceEEEEEEEEEeeccceEEEEEEeeCc
Q 040402 249 PNAVFIDGYFTSQDGAPIQTPNAICIFERHTGDVMWRHTEAEMPGD-VREVRPEVSLVVRMVATVGNYDYVIDWEFKPSG 327 (567)
Q Consensus 249 g~a~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~-~~~~r~~~~LVvr~i~TVgNYdYi~~~~F~~dG 327 (567)
|+|+|||+++.+++|+|++++|||||||+|+|||||||++++..+. ++.++..++||||+|+|||||||||+|+|||||
T Consensus 329 g~i~YlD~~~~~~~G~p~~~~NaICihE~D~GgilwkHt~~~~~~~~~r~g~~~~~LVvr~I~TVgNYDYif~w~F~qdG 408 (646)
T PLN02566 329 ANAVYLDGYVAGADGQAQKMTNVICIFERYSGDVAFRHTEINVPGRVIRSGEPEISLVVRMVATLGNYDYILDWEFKKSG 408 (646)
T ss_pred CCcEEeeeEEecCCCCEEEecCEEEEEeecCCccceeeccCCCCccccccCcceEEEEEEEEEEeecccEEEEEEEecCc
Confidence 9999999999999999999999999999998899999999986655 566778889999999999999999999999999
Q ss_pred cEEEEEEEeeeEEeeccccc--------cCCCCccccCCcccccccEEEeeeeeecccCCCCeEEEEEE-----------
Q 040402 328 SIKLGCKVRPVEYTHIDQIK--------EDQQGKLVADNTIGVNHDHFLNYYLDLDIDGYANSFEKTKL----------- 388 (567)
Q Consensus 328 tIe~~v~v~atg~~~~~~~~--------~~~yG~~V~~~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~----------- 388 (567)
+||++| +||||+++.... ..+||++|+|+++|++|||+|||||||||||++|||++.|+
T Consensus 409 tIe~eV--~aTGil~t~~~~~~~~~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIdG~~Nsv~~~~~~~~~~~~~~~~ 486 (646)
T PLN02566 409 SIKVGV--DLTGVLEMKATSYTNNDQITKDVYGTLVAENTIAVNHDHFLTYYLDLDVDGNGNSFVKAKLQTARVTAVNAS 486 (646)
T ss_pred eEEEEE--EeEEEEEecccccccccccccCCCccEecCCcccccceEEEEEEEcccccCCCCeEEEEeeEEccCCCCCCC
Confidence 999987 999999854331 14799999999999999999999999999999999999888
Q ss_pred -------EEEEEeeeChHhHhhccCCCCcEEEEEcCCCCCCCCCceeEEEecCCCcCCCCCCCCcccccccccceeeEEe
Q 040402 389 -------TVEKETAKTEFEARLKLDTKPMEFAMVNPNKKTKIGHPVGYRLLPGLVVGPLLTDDDYPQIRAGFTDYNIWVT 461 (567)
Q Consensus 389 -------~~~~~~~~tE~~a~~~~~~~~r~~~i~N~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT 461 (567)
++++++++||++|+++++...|.|+|+|++++|++|+|+||||+|+++++++++++|+..+||+||+|+||||
T Consensus 487 np~g~~~~~~~~~~~tE~~a~~~~~~~~~~~~i~N~~~~N~~G~pvgYkL~p~~~~~~l~~~~s~~~~Ra~fa~~~lwVT 566 (646)
T PLN02566 487 SPRKSYWTVVKETAKTEAEGRIRLGSEPAELLIVNPNKKTKLGNQVGYRLITGQPVTSLLSDDDYPQIRAAYTKYQVWVT 566 (646)
T ss_pred CCCcceEEEEEEEecchhhhhhccCCCCceEEEECCCCcCCCCCeeeEEEccCCCccccCCCccchhhcchhhhCcEEEe
Confidence 5678999999999999999447799999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCcCccCCCCCCChhhhccCCCceeeCCeEEEEEeccccCCCCCCCCCccceeeeEEEEeCCCCCCCCcc
Q 040402 462 PYNKSEKYSGGNYVDQSHGDDTLLQWTDGNREIENKDIVLWYTMGIHHAPCQEDFPVMPTVSGGFELRPTNFFEYNPVL 540 (567)
Q Consensus 462 ~y~~~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~H~Pr~ED~Pvmp~~~~~f~L~P~nFFd~nP~l 540 (567)
+|+|+|+||||.|++|+++++||++|+++||+|+|+|||+|||||+||+||+|||||||++++||+|||+|||++||+|
T Consensus 567 ~y~d~E~~aag~y~~qs~g~~gl~~w~~~~~~I~~~DiVlW~t~G~~HvPr~ED~PvMP~~~~gf~L~P~nFF~~NPaL 645 (646)
T PLN02566 567 AYNKSERWAGGFYADRSRGDDGLAVWSSRNREIENKDIVLWYTVGFHHIPYQEDFPVMPTLHGGFELRPANFFESNPLL 645 (646)
T ss_pred cCCCcccCCCCcCccCCCCCCChhhhhcCCCcccCCceEEEEecccccCCChhhCCCcccccceEEEEcCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
No 3
>PRK14696 tynA tyramine oxidase; Provisional
Probab=100.00 E-value=2.4e-156 Score=1303.43 Aligned_cols=527 Identities=32% Similarity=0.587 Sum_probs=483.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCC-CCCeeEEEEEccCCChHHhhhhhcCCC-CCCCceEEE------------EECCC
Q 040402 4 CHRPLDSLSPAEFTLVQTIVKTSYP-SNNLSFHYVGLDEPDKAVVYSWLSNSK-IKIPRRAIV------------IDLSR 69 (567)
Q Consensus 4 ~~HPldpLs~~Ei~~a~~~l~~~~~-~~~~~f~~I~L~EP~K~~vl~~l~~~~-~~p~R~A~v------------V~L~~ 69 (567)
++|||||||++||++|++||+++.+ +.+++|++|+|.||+|++|++|++++. ..|+|+|+| |||++
T Consensus 86 ~~HPLdpLt~~Ei~~a~~iv~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~~~~~~R~A~v~~~~~~~~~e~vVdL~~ 165 (721)
T PRK14696 86 RPHPLNALTADEIKQAVEIVKASADFKPNTRFTEISLKEPDKEAVWAFALENKPVDQPRKADVIMLDGKHVIEAVVDLQN 165 (721)
T ss_pred CCCCCCCCCHHHHHHHHHHHHhccccCCceEEEEEEecCCCcHHHHHHHhcCCCCCCCcEEEEEEEeCCCEEEEEEECCC
Confidence 4699999999999999999999875 568999999999999999999998532 337899998 89999
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHHHHhhhccCHHHHHHHHHcCC-Ccccc-------------c----CceEEEEEEEee
Q 040402 70 RSIVSDKVYTGHGFPLLTLEEQRTGAAPVLAYEPFKASVKKRGL-NISDV-------------E----SKRELKFPCFYT 131 (567)
Q Consensus 70 ~~v~~~~~~~~~~~p~~~~eE~~~~~~~~~~~p~~~~a~~~rgl-~~~~v-------------~----~rR~~~~~~~~~ 131 (567)
++|++++.++ ++||++++|||.+|+++|++||+|+++|++||| ++++| + +||++|++||++
T Consensus 166 ~~v~~~~~~~-~~~p~~~~~e~~~~e~~~~~dp~~~~ai~~rgl~~~~~V~~dpw~~G~~~~~~~~~~~~Rl~~~~~y~~ 244 (721)
T PRK14696 166 NKVLSWQPIK-DAHGMVLLDDFASVQNIINNSEEFAAALKKRGITDVKKVITTPLTVGYFDGKDGLKQDARLLKVVSYLD 244 (721)
T ss_pred CEEEEEEeCC-CccCCCCHHHHHHHHHHHhhCHHHHHHHHHcCCCCCCEEEEeCccccccCCcCccccCceEEEEEEEEc
Confidence 9999998876 569999999999999999999999999999999 56656 2 599999999998
Q ss_pred eCCCCCcccCCCCCeEEEEecCCceEEEEeCCccccCCCCCCCCCCcCCCCCCCCCCCCCCcc-CCCCCeeEEeCcEEee
Q 040402 132 DQGTVNMFLRPIEGITIVVDIEEMKVTQYNDREVAPIPKSEPTEYRWSKLKPPFGPRLNSVTT-LPTGPGFKIDGNTVKW 210 (567)
Q Consensus 132 ~~~~~n~yahPi~gl~~~vD~~~~~v~~i~d~~~~~~p~~~~~~y~~~~~~~~~r~~~kP~~i-qPeG~sf~v~g~~V~w 210 (567)
++++|+||||||||.++||++++||++|+|.+..+.|.. .++|++++ ++|+++||++| ||||+||+|+|++|+|
T Consensus 245 -~~~~N~Ya~Pi~G~~~vvDl~~~kVi~i~d~g~~~~p~~-~~~Y~~~~---~~r~~lKPl~i~QPeG~sF~v~G~~V~W 319 (721)
T PRK14696 245 -VGDGNYWAHPIENLVAVVDLEQKKIIKIEEGPVVPVPMT-ARPYDGRD---RVAPAVKPLQIIEPEGKNYTITGDTIHW 319 (721)
T ss_pred -CCCccccccccCceEEEEECCCCEEEEEecCCCCCCCCC-CcCCCccc---cccCCCCCceeeCCCCCCEEEcCCeEEE
Confidence 889999999999999999999999999999877555544 36998775 47999999999 9999999999999999
Q ss_pred cceEEEEeecCCccceEEccEEecCCCCcccC------------------------------------------CCCCCC
Q 040402 211 ANWVFNVGFDARVGTIISTASIYDVDMHKYRR------------------------------------------PLKDCP 248 (567)
Q Consensus 211 ~~W~f~~~f~~reGl~L~~v~~~d~r~~~~R~------------------------------------------~G~DCp 248 (567)
|||+||+|||+||||+||||+|+|. |..|+ +|||||
T Consensus 320 ~~W~f~vgf~~ReGlvL~dv~y~d~--g~~R~v~YrlSlsEm~VPYgdp~p~~~~k~~fD~GeyG~G~~an~L~lGcDCp 397 (721)
T PRK14696 320 RNWDFHLSLDSRVGPMLSTVTYNDN--GTKRKVMYEGSLGGMIVPYGDPDIGWYFKAYLDSGDYGMGTLTSPIARGKDAP 397 (721)
T ss_pred CCcEEEEecCCCcceEEEEEEEcCC--CcceeEEEEeeeeeEEEeCCCCCchhhhceeeeccccCCcccccccccCCCCC
Confidence 9999999999999999999999982 22222 899999
Q ss_pred CCcEEeeeEEEcCCCceeEeCcceEEeeecCCCccccccccCCCCceeeeeeceEEEEEEEEEeeccceEEEEEEeeCcc
Q 040402 249 PNAVFIDGYFTSQDGAPIQTPNAICIFERHTGDVMWRHTEAEMPGDVREVRPEVSLVVRMVATVGNYDYVIDWEFKPSGS 328 (567)
Q Consensus 249 g~a~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~~~~~r~~~~LVvr~i~TVgNYdYi~~~~F~~dGt 328 (567)
|+|+|||+++.+++|+|++++|||||||+| .|++|||++++.+..++|+| +||||+|+|||||||||+|+|||||+
T Consensus 398 g~i~Y~D~~~~~~~G~p~~~~NaICihE~D-~G~~wkHt~~~~~~~~~r~r---~LVvr~i~TVgNYDYif~w~F~qdGt 473 (721)
T PRK14696 398 SNAVLLDETIADYTGVPMEIPRAIAVFERY-AGPEYKHQEMGQPNVSTERR---ELVVRWISTVGNYDYIFDWVFHENGT 473 (721)
T ss_pred CCCEEeeeEEEcCCCCeEEecCEEEEeeec-CCCceeccccCCCcceEeee---EEEEEEEEEecceeEEEEEEEecCce
Confidence 999999999999999999999999999999 56999999998542244444 99999999999999999999999999
Q ss_pred EEEEEEEeeeEEeecccc-----------ccCCCCccccCCcccccccEEEeeeeeecccCCCCeEEEEEE---------
Q 040402 329 IKLGCKVRPVEYTHIDQI-----------KEDQQGKLVADNTIGVNHDHFLNYYLDLDIDGYANSFEKTKL--------- 388 (567)
Q Consensus 329 Ie~~v~v~atg~~~~~~~-----------~~~~yG~~V~~~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~--------- 388 (567)
||++| +||||+++... ++.+||++|+|+++|++|||+|||||||||||.+|||++.|+
T Consensus 474 Ie~eV--~aTGil~t~~i~~~~~~~~~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIDG~~Nsv~~~d~~~~p~~~~n 551 (721)
T PRK14696 474 IGIDA--GATGIEAVKGVKAKTMHDETAKEDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMDPVVKPNTAGG 551 (721)
T ss_pred EEEEE--EEEEEEEeccccccccccccccccCCCccEecCCcccccceEEEEEEEcccccCCcceEEEEeeeEccCCCCC
Confidence 99987 99999886551 135899999999999999999999999999999999999997
Q ss_pred ------EEEEEeeeChHhHhhccCC-CCcEEEEEcCCCCCCCCCceeEEEecCC--CcC----CCCCCCCcccccccccc
Q 040402 389 ------TVEKETAKTEFEARLKLDT-KPMEFAMVNPNKKTKIGHPVGYRLLPGL--VVG----PLLTDDDYPQIRAGFTD 455 (567)
Q Consensus 389 ------~~~~~~~~tE~~a~~~~~~-~~r~~~i~N~~~~N~~G~p~gYkl~p~~--~~~----~l~~~~s~~~~ra~fa~ 455 (567)
++++++++||.+|++++++ ++|. |+|++++|++|+|+||||+|++ +.. +++.|+|+..+||+||+
T Consensus 552 P~g~~~~~~~t~l~tE~~a~~~~~~~~~R~--ivN~~~~N~~G~pvgYkL~p~~~~~~~~~~~~~~~p~s~~~~Ra~fa~ 629 (721)
T PRK14696 552 PRTSTMQVNQYNIGNEQDAAQKFDPGTIRL--LSNPNKENRMGNPVSYQIIPYAGGTHPVAKGANFAPDEWIYHRLSFMD 629 (721)
T ss_pred ccceEEEEEEEEccchhhhhhccCCccceE--EeCCCccCCCCCeeeEEEecCCCCccccccccccCCcchhhhhhhhhh
Confidence 7889999999999999999 8886 9999999999999999999974 432 37889999999999999
Q ss_pred eeeEEeecCCCCCCCCCcCccCCCCCCChhhhccCCCceeeCCeEEEEEeccccCCCCCCCCCccceeeeEEEEeCCCCC
Q 040402 456 YNIWVTPYNKSEKYSGGNYVDQSHGDDTLLQWTDGNREIENKDIVLWYTMGIHHAPCQEDFPVMPTVSGGFELRPTNFFE 535 (567)
Q Consensus 456 ~~lwVT~y~~~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~H~Pr~ED~Pvmp~~~~~f~L~P~nFFd 535 (567)
||||||+|+|+|+||+|+|++|+.+++||++|+++||+|+|+|||+|||||+||+||+|||||||++++||+|||+|||+
T Consensus 630 ~~lwVT~y~d~E~~aaG~y~~qs~g~~gl~~w~~~~e~i~n~DiV~W~t~G~~HvPr~ED~PvMP~~~~~f~LkP~nFFd 709 (721)
T PRK14696 630 KQLWVTRYHPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNTDAVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFD 709 (721)
T ss_pred CcEEEeccCCcccCCCCCCccCCCCCCCHHHHhhCCCcccCCceEEEEecCcccCCchhhCCCccceeeeEEEEcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCC
Q 040402 536 YNPVLKVIPPK 546 (567)
Q Consensus 536 ~nP~ldvp~~~ 546 (567)
+||+||||+..
T Consensus 710 ~nPaldvp~~~ 720 (721)
T PRK14696 710 ETPTLGLLKKD 720 (721)
T ss_pred CCcccCCCCCC
Confidence 99999999874
No 4
>COG3733 TynA Cu2+-containing amine oxidase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.7e-152 Score=1200.70 Aligned_cols=529 Identities=34% Similarity=0.628 Sum_probs=495.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCC-CCCeeEEEEEccCCChHHhhhhhcCCCCCCCceEEE--------------EECCC
Q 040402 5 HRPLDSLSPAEFTLVQTIVKTSYP-SNNLSFHYVGLDEPDKAVVYSWLSNSKIKIPRRAIV--------------IDLSR 69 (567)
Q Consensus 5 ~HPldpLs~~Ei~~a~~~l~~~~~-~~~~~f~~I~L~EP~K~~vl~~l~~~~~~p~R~A~v--------------V~L~~ 69 (567)
+|||||||++||++|++|||++.. .+.+.|.+|+|.||+|++|++|...+ .+++|.|+| |||++
T Consensus 29 shPLdpLt~~Eik~aVEivr~e~~~~~~~~F~~VtL~eP~K~~v~~f~~~~-~~ieR~a~~~~~~~~~~~i~EavV~L~~ 107 (654)
T COG3733 29 SHPLDPLTADEIKQAVEIVRAEADFKKNFAFTEVTLLEPDKQEVLAFRLEN-KPIERKALAVVYELDGKGIYEAVVDLDN 107 (654)
T ss_pred CCCCCccCHHHHHHHHHHHHhhcccCCceeeEEEEecCCchHHHHHHHhcC-CCcchhhhhheeeccCCceEEEEEEccc
Confidence 699999999999999999999864 47899999999999999999997632 257888887 89999
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHHHHhhhccCHHHHHHHHHcCC-Ccccc---------------cCceEEEEEEEeeeC
Q 040402 70 RSIVSDKVYTGHGFPLLTLEEQRTGAAPVLAYEPFKASVKKRGL-NISDV---------------ESKRELKFPCFYTDQ 133 (567)
Q Consensus 70 ~~v~~~~~~~~~~~p~~~~eE~~~~~~~~~~~p~~~~a~~~rgl-~~~~v---------------~~rR~~~~~~~~~~~ 133 (567)
.+|.+|+.++ +++|+|+.+||.++|.+++++|+|+|||+|||| ++++| .+||+.+.+||+|+.
T Consensus 108 nkv~~~q~i~-~a~p~i~ldef~~~e~iVr~d~~~~eA~~krGi~D~~~V~vdpwt~G~~~~~~~~grr~~~~~m~yr~~ 186 (654)
T COG3733 108 NKVLSWQPIK-DAHPMITLDEFASVENIVRNDPRFIEACKKRGITDMDQVIVDPWTAGYFDEEGLKGRRRALKVMWYRDV 186 (654)
T ss_pred ceeeeeEecc-ccCCceeHHHHHHHHHHHhcCHHHHHHHHhcCCchhhceEeccccccccCccccccceeEEEEEEEEec
Confidence 9999999877 569999999999999999999999999999999 56766 469999999999988
Q ss_pred CCCCcccCCCCCeEEEEecCCceEEEEeCCccccCCCCCCCCCCcCCCCCCCCCCCCCCcc-CCCCCeeEEeCcEEeecc
Q 040402 134 GTVNMFLRPIEGITIVVDIEEMKVTQYNDREVAPIPKSEPTEYRWSKLKPPFGPRLNSVTT-LPTGPGFKIDGNTVKWAN 212 (567)
Q Consensus 134 ~~~n~yahPi~gl~~~vD~~~~~v~~i~d~~~~~~p~~~~~~y~~~~~~~~~r~~~kP~~i-qPeG~sf~v~g~~V~w~~ 212 (567)
.++|+|+|||+||.++||+++++|++|+|++++|+|. +..+|..+.++ +.+.++||++| ||+|.||+|+|++|+||+
T Consensus 187 e~~N~y~hPi~gl~aiVDl~~~kVv~idd~~vvPlp~-~~~ny~~e~i~-~~~~~~KpiqI~QPeg~sf~i~G~~i~W~~ 264 (654)
T COG3733 187 EDDNYYAHPIEGLVAIVDLEKKKVVRIDDHPVVPLPM-KRANYGRERIG-KALGPVKPIQIIQPEGKSFTITGDEISWQN 264 (654)
T ss_pred CCCCcccccccceeeEEEcccCeEEEecCCCcccccc-cccCcCHHHhh-hhcCCCCCceeecCCCceEEEecCEEEEee
Confidence 8999999999999999999999999999999999998 45688866544 34555999999 999999999999999999
Q ss_pred eEEEEeecCCccceEEccEEecCCCCcccC------------------------------------------CCCCCCC-
Q 040402 213 WVFNVGFDARVGTIISTASIYDVDMHKYRR------------------------------------------PLKDCPP- 249 (567)
Q Consensus 213 W~f~~~f~~reGl~L~~v~~~d~r~~~~R~------------------------------------------~G~DCpg- 249 (567)
|+||+|||+||||+||||+|.| .|..|+ +| ||.|
T Consensus 265 w~frig~n~ReGlvl~dVsY~D--~g~~Rpv~YraSl~eMvVPYGdPd~~h~~K~~fD~GeYglG~l~~plalG-dc~g~ 341 (654)
T COG3733 265 WRFRIGMNPREGLVLSDVSYND--NGNKRPVLYRASLVEMVVPYGDPDPGHYFKNAFDSGEYGLGTLTSPLALG-DCAGS 341 (654)
T ss_pred eeEEEeccccCCeEEEEEEEcC--CCccceEEEEeeecceeeecCCCCcchhhhhcccccccCccccccchhhc-ccccc
Confidence 9999999999999999999999 666666 78 9999
Q ss_pred CcEEeeeEEEcCCCceeEeCcceEEeeecCCCccccccccCCCCc-eeeeeeceEEEEEEEEEeeccceEEEEEEeeCcc
Q 040402 250 NAVFIDGYFTSQDGAPIQTPNAICIFERHTGDVMWRHTEAEMPGD-VREVRPEVSLVVRMVATVGNYDYVIDWEFKPSGS 328 (567)
Q Consensus 250 ~a~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~-~~~~r~~~~LVvr~i~TVgNYdYi~~~~F~~dGt 328 (567)
.|+|||+++.+.+|+|++++|||||||+| .|+||||+++|+++. ++|.| .||||+|+||+||||+|+|+|||||+
T Consensus 342 ~i~~lDa~~a~~tG~p~~i~~AIcIhEed-~GvlwKH~d~rs~~~~trr~r---~LVVs~i~Tv~NYdYg~~WifhqDGt 417 (654)
T COG3733 342 NIVLLDATFANYTGEPMTIPNAICIHEED-AGVLWKHQDFRSPNVETRRAR---GLVVSWIATVANYDYGFYWIFHQDGT 417 (654)
T ss_pred eeEEEeeeeeccCCceEEecceeEEEecc-ccceeeehhhcCCccceeecc---ceEEEEEEeecccceeEEEEEEcCce
Confidence 99999999999999999999999999999 779999999999887 66666 89999999999999999999999999
Q ss_pred EEEEEEEeeeEEeeccccc----cCCCCccccCCcccccccEEEeeeeeecccCCCCeEEEEEE---------------E
Q 040402 329 IKLGCKVRPVEYTHIDQIK----EDQQGKLVADNTIGVNHDHFLNYYLDLDIDGYANSFEKTKL---------------T 389 (567)
Q Consensus 329 Ie~~v~v~atg~~~~~~~~----~~~yG~~V~~~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~---------------~ 389 (567)
||+++ ++|||+++.... ...||++|.|++.|++||||||+||||||||.+|||+++|+ .
T Consensus 418 Ie~e~--klTGIin~~a~~e~~p~~~yGt~v~~~v~g~~HQH~Fn~RLdm~VDG~~Nsv~e~nv~~~P~~~~np~gNaf~ 495 (654)
T COG3733 418 IEFEA--KLTGIINTKAIAEGQPDPTYGTLVDPNVVGHTHQHFFNARLDMDVDGERNSVVEMNVVGAPITKGNPYGNAFQ 495 (654)
T ss_pred EEEee--cceeEEEeehhcCCCCCCCccceeccccccccceeEEEeeecccccCcccceEEEEcccCCCCCCCCccceEE
Confidence 99986 999999987653 23499999999999999999999999999999999999998 7
Q ss_pred EEEEeeeChHhHhhccCC-CCcEEEEEcCCCCCCCCCceeEEEecCCCcCCCCCCCCcccccccccceeeEEeecCCCCC
Q 040402 390 VEKETAKTEFEARLKLDT-KPMEFAMVNPNKKTKIGHPVGYRLLPGLVVGPLLTDDDYPQIRAGFTDYNIWVTPYNKSEK 468 (567)
Q Consensus 390 ~~~~~~~tE~~a~~~~~~-~~r~~~i~N~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~~~E~ 468 (567)
++++++++|++|.+++|+ +.|+|+|+|++|+|..|+|+||||+|+.+..+++.++|.+.+|++||+||||||+|++.|+
T Consensus 496 ~e~t~l~~e~dA~r~~d~~T~R~W~I~NpnkkN~~G~PvaYkLi~~~~~~~~~~~gs~v~~R~~Fa~~hlwVT~y~p~Er 575 (654)
T COG3733 496 VEETVLKNEKDACRDADPKTSRYWKIANPNKKNYLGNPVAYKLIPGHNPTPPVAEGSQVRHRAGFATKHLWVTPYHPGER 575 (654)
T ss_pred EecccCccHHHHHhhcCCcccceEEecCcccccccCCCceeEEecCCCCCCcCCCCcchhhhhhhccceEEEeccCcccc
Confidence 889999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCccCCCCCCChhhhccCCCceeeCCeEEEEEeccccCCCCCCCCCccceeeeEEEEeCCCCCCCCcccCCCCC
Q 040402 469 YSGGNYVDQSHGDDTLLQWTDGNREIENKDIVLWYTMGIHHAPCQEDFPVMPTVSGGFELRPTNFFEYNPVLKVIPPK 546 (567)
Q Consensus 469 ~asg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~H~Pr~ED~Pvmp~~~~~f~L~P~nFFd~nP~ldvp~~~ 546 (567)
||+|+|+||+.+++||++|+++||||+|||||+|||||+||+||+|||||||++++||+|+|+|||++||+|++|.+.
T Consensus 576 Yp~GdYpnq~~~~~GLp~yi~~d~sl~neDlVvW~T~GitHv~rpED~PvMP~e~~gf~L~P~gFFd~nPai~lp~~~ 653 (654)
T COG3733 576 YPAGDYPNQSAGGKGLPEYIKDDRSLDNEDLVVWHTFGITHVPRPEDWPVMPVEWAGFLLKPRGFFDRNPAIDLPRKD 653 (654)
T ss_pred cCCCCCCCCCCCCCChhhhhhccccccCcceEEEEecCceeccCcccCCccccchhceEeccccccccCcccCCCccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999875
No 5
>KOG1186 consensus Copper amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.3e-135 Score=1097.08 Aligned_cols=546 Identities=54% Similarity=0.927 Sum_probs=501.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCC---CCeeEEEEEccCCChHHhhhhhcCCC-CCCCceEEE------------EEC
Q 040402 4 CHRPLDSLSPAEFTLVQTIVKTSYPS---NNLSFHYVGLDEPDKAVVYSWLSNSK-IKIPRRAIV------------IDL 67 (567)
Q Consensus 4 ~~HPldpLs~~Ei~~a~~~l~~~~~~---~~~~f~~I~L~EP~K~~vl~~l~~~~-~~p~R~A~v------------V~L 67 (567)
+.|||||||+.||..++.+|+...++ ...-+.+|.|.||.|+-++.|+.|++ .+|+|+|++ |||
T Consensus 26 p~hPlDPLte~EL~kvr~iL~~~d~~s~~~~~~~~av~l~eP~K~~vlsw~~gP~~~pPpRRA~vVaR~gg~t~e~~vdl 105 (670)
T KOG1186|consen 26 PSHPLDPLTELELPKVAAILAHLDPGSPHPAFEAVAVVLFEPQKQPVLSWLSGPLPHPPPRRALVVERHGGPTPEARVDL 105 (670)
T ss_pred CCCCcCccchhhhhHHHHHHhhcccCCCCCceEEEEEEecCCCcCccceeccCCCCCCCcceeEEEeecCCCceEEEEec
Confidence 36999999999999999999987653 67789999999999999999999644 467899999 789
Q ss_pred CCCcEEEEEEe-cCCCCCCCCHHHHHHHHhhhccCHHHHHHHHHcCCCcccc---------------cCceEEEEEEEee
Q 040402 68 SRRSIVSDKVY-TGHGFPLLTLEEQRTGAAPVLAYEPFKASVKKRGLNISDV---------------ESKRELKFPCFYT 131 (567)
Q Consensus 68 ~~~~v~~~~~~-~~~~~p~~~~eE~~~~~~~~~~~p~~~~a~~~rgl~~~~v---------------~~rR~~~~~~~~~ 131 (567)
++++|.+.... .+.+.|+++.+|+.+..+++++.+.|..++.+||+.++.| +.+|+++..||++
T Consensus 106 st~evvs~~~~~~~~g~P~lT~~e~~~~s~~~l~~~~f~~si~~rG~~~s~vic~~~t~Gwyge~~~g~~Rlik~~~f~~ 185 (670)
T KOG1186|consen 106 STAEVVSIKHHLVGNGYPILTADELFNTSGRVLAFKPFCPRGLRRGDRMSWVVCYPNTSGWYGEHPVGLERLIKHMAFYR 185 (670)
T ss_pred chheeeecccccccCccccccHHHHHhhhcCCccccccchhhhccCCcceeEEEecceeeecccCCcchhhhhhhccccc
Confidence 99999987765 5668999999999999999999999999999999987666 2389999999999
Q ss_pred eCCCCCcccCCCCCeEEEEecCCceEEEEeCCccccCCCCCCCCCCcCCCCCCCCCCCCCCcc-CCCCCeeEEeCcEEee
Q 040402 132 DQGTVNMFLRPIEGITIVVDIEEMKVTQYNDREVAPIPKSEPTEYRWSKLKPPFGPRLNSVTT-LPTGPGFKIDGNTVKW 210 (567)
Q Consensus 132 ~~~~~n~yahPi~gl~~~vD~~~~~v~~i~d~~~~~~p~~~~~~y~~~~~~~~~r~~~kP~~i-qPeG~sf~v~g~~V~w 210 (567)
....|+|.+||+|++++||+.++||+++.|+..+|+|...+++|+.+.+. ..+||+. +|+||||+|+|+.|+|
T Consensus 186 -~~~~n~y~rpieg~yi~vdld~~kVi~~~d~~~iP~P~~~Gt~~Rs~~~p-----~~~pLq~isPeGP~FrVeG~~V~w 259 (670)
T KOG1186|consen 186 -AGWVNQQVRPIEGFYIIVDLDEMKVIAGRDRVRVPLPKAKGTELRSSVLP-----GFKPLQPISPEGPGFRVEGHLVRW 259 (670)
T ss_pred -CCCeeEEEeecCceEEeeccccceEEEEecccccccCCCCCCccccccCC-----CCccccccCCCCCceEEEEEEEEe
Confidence 56789999999999999999999999999998889999888888754321 3455776 7999999999999999
Q ss_pred cceEEEEeecCCccceEEccEEecCCCCcccC------------------------------------------CCCCCC
Q 040402 211 ANWVFNVGFDARVGTIISTASIYDVDMHKYRR------------------------------------------PLKDCP 248 (567)
Q Consensus 211 ~~W~f~~~f~~reGl~L~~v~~~d~r~~~~R~------------------------------------------~G~DCp 248 (567)
++|+|++||+.|+||+|++|+|.|.+. .|. +|||||
T Consensus 260 ~nW~Fh~~~~~r~Gl~is~v~~~d~~~--~r~v~Y~~s~~E~~vpYgdp~~~~~~~~y~D~Ge~G~G~~a~~L~~g~DCp 337 (670)
T KOG1186|consen 260 ANWEFHIGFDVRAGLVISDASFFDEDV--YRRVLYKGSLSEMFVPYGDPSPDWYFKTYLDCGEFGLGQYAVSLAPGTDCP 337 (670)
T ss_pred eccEEEEccCCccceEEEEEEEcCCCc--eeeEEEEeeeeeeEEecCCCCchhheeeeecccccCCCccccccccCCCCC
Confidence 999999999999999999999999532 333 899999
Q ss_pred CCcEEeeeEEEcCCCceeEeCcceEEeeecCCCccccccccCCCCc-eeeeeeceEEEEEEEEEeeccceEEEEEEeeCc
Q 040402 249 PNAVFIDGYFTSQDGAPIQTPNAICIFERHTGDVMWRHTEAEMPGD-VREVRPEVSLVVRMVATVGNYDYVIDWEFKPSG 327 (567)
Q Consensus 249 g~a~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~-~~~~r~~~~LVvr~i~TVgNYdYi~~~~F~~dG 327 (567)
+.|+|||+++...+|+|.+++||+||||+++|.|||||+++...+. .+.+|+++.||||+++|||||||||||+||+||
T Consensus 338 ~~a~y~D~~f~~~~g~p~~~~n~~CifE~~~G~~l~rH~~~~~~~~~~~~~~~~~~LVvr~~~tv~NYdYi~d~~F~~~G 417 (670)
T KOG1186|consen 338 GNATYMDGHFAGQDGTPEKIPNAMCIFEKYAGDILWRHTEAEIPGLHITEVRPDVSLVVRMVTTVGNYDYIVDYEFKPSG 417 (670)
T ss_pred CcceEEEEEEecCCCCcEEecCcEEEEEccCCCceeeccccccCCCcccccccccEEEEEEeeeecccceEEEEEEecCC
Confidence 9999999999999999999999999999998889999999766665 788999999999999999999999999999999
Q ss_pred cEEEEEEEeeeEEeeccccc----cCCCCccccCCcccccccEEEeeeeeecccCCC-CeEEEEEE--------------
Q 040402 328 SIKLGCKVRPVEYTHIDQIK----EDQQGKLVADNTIGVNHDHFLNYYLDLDIDGYA-NSFEKTKL-------------- 388 (567)
Q Consensus 328 tIe~~v~v~atg~~~~~~~~----~~~yG~~V~~~~~a~~HqH~f~~RlD~dIdG~~-Nsv~~~d~-------------- 388 (567)
+||++| ++|||+++.++. ...|||+|++++.|++|||+|+|||||||||++ |++++...
T Consensus 418 ~ie~~v--~lTG~l~~~~~~~~~~~~~~Gt~v~~~~ig~~H~H~~~~rldldvdG~~n~~~v~~~~~~~~~~~~~~~~~~ 495 (670)
T KOG1186|consen 418 VIEAGV--GLTGVLEVKPVEYGETSDIYGTIVAENTIGVNHDHFVTFRLDLDVDGTKNNSFVRDELVTPRTPPSVTPRKS 495 (670)
T ss_pred eEEEEE--eeEEEEEeeccccccccccccceecccccccccceEEEEEEcccccCCccceeeeeeEeecccCCCCCcccc
Confidence 999987 999999987764 258999999999999999999999999999995 55555444
Q ss_pred --EEEEEeeeChHhHhhccCC-CCcEEEEEcCCCCCCCCCceeEEEecCCCcCCCCCCCCcccccccccceeeEEeecCC
Q 040402 389 --TVEKETAKTEFEARLKLDT-KPMEFAMVNPNKKTKIGHPVGYRLLPGLVVGPLLTDDDYPQIRAGFTDYNIWVTPYNK 465 (567)
Q Consensus 389 --~~~~~~~~tE~~a~~~~~~-~~r~~~i~N~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~~ 465 (567)
++++++++||++|+.+++. +++.|.|+|++++|++|+|+||||+|++++.++++++++.++||+|++|+||||+|++
T Consensus 496 ~~~~~~~~~kte~~~~~~~~~~~~~~~~~~n~n~~~~~G~~~gYrl~~~s~a~~ll~~~~~~~~r~af~~y~l~VT~y~~ 575 (670)
T KOG1186|consen 496 YWTTKRKTAKTEAEARAKLNGLKAEELLVVNPNKKTKHGNPVGYRLVPGSTAGPLLPQDDYPQIRAAFTNYNLWVTPYNE 575 (670)
T ss_pred hhhhhhhhhhhHHHHhhhhccCCCceEEEECCCCccccCCccceEEeeCCcccccCCCCchHHhhhhhhcceeEEeccCc
Confidence 5567888999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcCccCCCCCCChhhhccCCCceeeCCeEEEEEeccccCCCCCCCCCccceeeeEEEEeCCCCCCCCcccCCCC
Q 040402 466 SEKYSGGNYVDQSHGDDTLLQWTDGNREIENKDIVLWYTMGIHHAPCQEDFPVMPTVSGGFELRPTNFFEYNPVLKVIPP 545 (567)
Q Consensus 466 ~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~H~Pr~ED~Pvmp~~~~~f~L~P~nFFd~nP~ldvp~~ 545 (567)
+|.||||.|.+|++++++|+.|+..|++|+|+|||+|||+||||+|+.||||+|||+..||.|||+|||++||+|++||+
T Consensus 576 ~E~~~~g~y~~~~~~~~tl~~w~~~nr~ien~DiV~W~t~Gf~HiP~~ED~P~mpt~~~gF~LrP~NFF~~nP~l~~~p~ 655 (670)
T KOG1186|consen 576 SEVWASGLYADQSQGDDTLAVWSQRNRSIENKDIVMWYTVGFHHVPCQEDFPTMPTLGGGFELRPTNFFERNPSLKSPPS 655 (670)
T ss_pred cccCcccccccCCCCCCcceehhhcccccccCceEEEEEcceeecCchhcCCCCcccCCceeeccccccccCccccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCc
Q 040402 546 KHVQWPNCTGKHQP 559 (567)
Q Consensus 546 ~~~~~~~~~~~~~~ 559 (567)
.....++|+++..|
T Consensus 656 ~~~~~~~c~p~~~~ 669 (670)
T KOG1186|consen 656 KYVTAPKCTPKNPP 669 (670)
T ss_pred ceeecccccCCCCC
Confidence 99999999988765
No 6
>PF01179 Cu_amine_oxid: Copper amine oxidase, enzyme domain; InterPro: IPR015798 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents the C-terminal catalytic domain of copper amine oxidases, and has a super-sandwich fold consisting of 18 beta-strands in 2 sheets []. A domain with a similar structural fold can be found as the third domain in lysyl oxidase PplO [].; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1US1_A 2C11_B 3ALA_E 2Y73_B 2C10_B 1PU4_B 2Y74_B 1W2Z_D 1KSI_B 1RKY_A ....
Probab=100.00 E-value=9.9e-122 Score=980.75 Aligned_cols=352 Identities=42% Similarity=0.761 Sum_probs=311.9
Q ss_pred CCcc-CCCCCeeEEeCcEEeecceEEEEeecCCccceEEccEEecCCC-CcccC--------------------------
Q 040402 191 SVTT-LPTGPGFKIDGNTVKWANWVFNVGFDARVGTIISTASIYDVDM-HKYRR-------------------------- 242 (567)
Q Consensus 191 P~~i-qPeG~sf~v~g~~V~w~~W~f~~~f~~reGl~L~~v~~~d~r~-~~~R~-------------------------- 242 (567)
||+| ||||+||+|+|++|+||+|+||++||+||||+||||+|.|.+. -.+|.
T Consensus 1 Pl~i~qP~G~sf~v~g~~v~w~~W~f~~~~~~r~Gl~l~dV~y~~~~~~I~yr~sl~Em~vpY~d~~~~~~~~~~~D~ge 80 (413)
T PF01179_consen 1 PLHIVQPEGPSFTVDGNYVEWQGWSFRVGFNPREGLVLHDVRYKGERRPILYRLSLQEMVVPYGDPDPPHHRKNAFDSGE 80 (413)
T ss_dssp -EEEE-TTS-SEEEETTEEEETTEEEEEEEETTTEEEEEEEEETTEEEEEEEEEEEEEEEEEEE-SSTTHHH-EEEHHHH
T ss_pred CcceeCCCCCCEEEeCCEEEeCCcEEEEECCCCccceEEEEEEeCCCccEEEEEeeeeeeeecCCCCchhhccccccccc
Confidence 8898 9999999999999999999999999999999999999988441 01111
Q ss_pred -----------CCCCCCCCcEEeeeEEEcCCCceeEeCcceEEeeecCCCccccccccCCCCceeeeeeceEEEEEEEEE
Q 040402 243 -----------PLKDCPPNAVFIDGYFTSQDGAPIQTPNAICIFERHTGDVMWRHTEAEMPGDVREVRPEVSLVVRMVAT 311 (567)
Q Consensus 243 -----------~G~DCpg~a~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~~~~~r~~~~LVvr~i~T 311 (567)
+||||||+|+|||+++.+++|+|++++|||||||+|.| |||||++++++.. .++++++||||+|+|
T Consensus 81 yG~G~~~~~L~~G~DCpg~~~yld~~~~~~~g~p~~~~naiCi~E~d~G-~l~kH~~~~~~~~--~~~r~~~LVvr~i~T 157 (413)
T PF01179_consen 81 YGLGSMANSLVLGCDCPGTITYLDAVLADDSGEPVTIPNAICIFEEDAG-PLWKHTDYRTGRF--EVRRSRRLVVRTIST 157 (413)
T ss_dssp TTTTTTBE-STTTTSS-TTSEEEEEEEEETTSSEEEEEEEEEEEEEEEE-EEEEEEETTSSEE--EEEEEEEEEEEEEEE
T ss_pred cccCccccccccCCCCCceeEEcceEEECCCCCceeccceEEEEEecCC-chhhccccccccc--ceeeccEEEEEEEEe
Confidence 89999999999999999999999999999999999955 9999999998654 455556999999999
Q ss_pred eeccceEEEEEEeeCccEEEEEEEeeeEEeeccccc---cCCCCccccCCcccccccEEEeeeeeecccCCCCeEEEEEE
Q 040402 312 VGNYDYVIDWEFKPSGSIKLGCKVRPVEYTHIDQIK---EDQQGKLVADNTIGVNHDHFLNYYLDLDIDGYANSFEKTKL 388 (567)
Q Consensus 312 VgNYdYi~~~~F~~dGtIe~~v~v~atg~~~~~~~~---~~~yG~~V~~~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~ 388 (567)
||||||||+|+|||||+||++| +||||+++.... +.+||++|+++++|++|||+|||||||||||++|||+++|+
T Consensus 158 V~NYDYi~~~~F~~dG~Ie~~v--~aTGil~~~~~~~~~~~~yG~~V~~~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~ 235 (413)
T PF01179_consen 158 VGNYDYIFDWIFYQDGSIEVEV--RATGILSTSPYAPGEQSPYGTRVAPGVMAPNHQHFFNFRLDFDIDGTNNSVVEVDI 235 (413)
T ss_dssp ETTEEEEEEEEEETTS-EEEEE--EEEE---EEETTTTCGGGSEEEEETTEEEEEEEEEEEEEEEE-TTSSEEEEEEEEE
T ss_pred ccccceEEEEEEecCceEEEEE--EeeeEEEEEecCCCCccCCcceEcCCccccceeEEEEEEEccccCCCCCeEEEEEe
Confidence 9999999999999999999987 999999987763 46899999999999999999999999999999999999998
Q ss_pred ------------------EEEEEeeeChHhHhhccCC-CCcEEEEEcCCCCCCCCCceeEEEecCCCcCCCCCCCCcccc
Q 040402 389 ------------------TVEKETAKTEFEARLKLDT-KPMEFAMVNPNKKTKIGHPVGYRLLPGLVVGPLLTDDDYPQI 449 (567)
Q Consensus 389 ------------------~~~~~~~~tE~~a~~~~~~-~~r~~~i~N~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~~~ 449 (567)
+++++++++|++|++++++ ++|+|+|+|++++|++|+|+||||+|+++++++++++|...+
T Consensus 236 ~~~~~~~~~~~np~~~~~~~~~t~~~tE~~a~~~~~~~~~r~w~vvN~~~~N~~G~p~gY~l~~~~~~~~l~~~~s~~~~ 315 (413)
T PF01179_consen 236 VPEPVTTPWSPNPYGNAFKTERTVLETEAEAARDFDPSTPRYWKVVNPNKKNPWGHPVGYRLQPGSSAHLLAPPDSWVAR 315 (413)
T ss_dssp EEEEEEETTSTTSEEEEEEEEEEEE-BGGGGEBETTCGGTEEEEEEEEEEEETTSSEEEEEEEEECBSS-SSSTTSCHHH
T ss_pred EEcccccCCCCCCccceeEEEEEeeCChhHhhhccCCCCccEEEEEcCCccccccCCceEEEecCCcccccCCCcchhhh
Confidence 6789999999999999999 999999999999999999999999999999999999999999
Q ss_pred cccccceeeEEeecCCCCCCCCCcCccCCCCCCChhhhccCCCceeeCCeEEEEEeccccCCCCCCCCCccceeeeEEEE
Q 040402 450 RAGFTDYNIWVTPYNKSEKYSGGNYVDQSHGDDTLLQWTDGNREIENKDIVLWYTMGIHHAPCQEDFPVMPTVSGGFELR 529 (567)
Q Consensus 450 ra~fa~~~lwVT~y~~~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~H~Pr~ED~Pvmp~~~~~f~L~ 529 (567)
||+||+|+||||||+|+|+||||+|++|++++.+|++|+++||+|+|||||+|+|+|+||+||+|||||||++++||+||
T Consensus 316 ra~fa~~~lwVT~y~d~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~HvPr~ED~Pvmp~~~~gf~L~ 395 (413)
T PF01179_consen 316 RASFARHHLWVTKYKDSERYASGEYNNQSPGDVGLPDWIADNESIENEDIVVWVTFGFHHVPRPEDWPVMPVEWLGFMLK 395 (413)
T ss_dssp HTGGGGSSEEEEE--TTGS-ST-TTTTT-SSSSSHHHHHTTSSB-SSEEEEEEEEEEEEE---GGGSSSEEEEEEEEEEE
T ss_pred ccccccCceEEeecCCCccCCCCCCccCCCCCCCHHHHhccCCcccCCCeEEEEeccccccCCcccCCCCCCcEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCcccCCCCCC
Q 040402 530 PTNFFEYNPVLKVIPPKH 547 (567)
Q Consensus 530 P~nFFd~nP~ldvp~~~~ 547 (567)
|+|||++||+||+|++.|
T Consensus 396 P~nFF~~nPald~p~~~~ 413 (413)
T PF01179_consen 396 PFNFFDRNPALDVPPSVQ 413 (413)
T ss_dssp EESSSSSSTTTTCTTC--
T ss_pred cCCCCCCCccccCCCCCC
Confidence 999999999999999875
No 7
>PF02728 Cu_amine_oxidN3: Copper amine oxidase, N3 domain; InterPro: IPR015802 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents one (N3) of the two N-terminal domains (N2/N3) that share a similar structure.; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1TU5_A 2PNC_B 3MPH_B 3HII_B 3HI7_A 3K5T_A 3HIG_A 1SPU_A 2WGQ_A 2WO0_A ....
Probab=99.75 E-value=2.2e-18 Score=151.70 Aligned_cols=85 Identities=38% Similarity=0.647 Sum_probs=69.8
Q ss_pred CCCCHHHHHHHHhhhccCHHHHHHHHHcCC-Ccccc-------------c-CceEEEEEEEeeeCCCCCcccCCCCCeEE
Q 040402 84 PLLTLEEQRTGAAPVLAYEPFKASVKKRGL-NISDV-------------E-SKRELKFPCFYTDQGTVNMFLRPIEGITI 148 (567)
Q Consensus 84 p~~~~eE~~~~~~~~~~~p~~~~a~~~rgl-~~~~v-------------~-~rR~~~~~~~~~~~~~~n~yahPi~gl~~ 148 (567)
|+++.+||.+++++++++|+|+++|++||| +++.| + ++|+.|++||+|..+. |+|||||+||++
T Consensus 1 ppi~~~E~~~~~~~~~~~p~~~~al~~rgi~d~~~v~~~pw~~g~~g~~~~g~Rl~~~~~~~r~~~~-n~YahPi~gl~~ 79 (101)
T PF02728_consen 1 PPITLEEFAEAEEIVKADPEFQAALKKRGITDMDEVCCDPWSYGPFGEESEGRRLTWVLCFMRDSGN-NFYAHPIEGLEP 79 (101)
T ss_dssp S---HHHHHHHHHHHHTGHHHHHHHHHTTCSCGGGEEEEEEE-SSSSSSTTTS-EEEEEEEE-SSTS--GGGSEEECEEE
T ss_pred CCcCHHHHHHHHHHHHHCHHHHHHHHHhCCCCcCeEEEeeecccCCCCCCCCceEEEEEEEEEcCCC-cccccccCceEE
Confidence 689999999999999999999999999999 45666 4 7999999999995444 999999999999
Q ss_pred EEecCCceEEEEeCCc-cccCC
Q 040402 149 VVDIEEMKVTQYNDRE-VAPIP 169 (567)
Q Consensus 149 ~vD~~~~~v~~i~d~~-~~~~p 169 (567)
+||+++++|++|++++ ..|+|
T Consensus 80 ~vD~~~~~vi~i~d~~v~~p~p 101 (101)
T PF02728_consen 80 LVDLDSMEVIRIEDRGVFYPGP 101 (101)
T ss_dssp EEETTTTEEEEEEEEEEEETT-
T ss_pred EEECCCCEEEEEEeCCceeeCC
Confidence 9999999999999988 45554
No 8
>PF02727 Cu_amine_oxidN2: Copper amine oxidase, N2 domain; InterPro: IPR015800 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents one (N2) of the two N-terminal domains (N2/N3) that share a similar structure.; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1W2Z_A 1KSI_B 1US1_A 2C11_B 3ALA_E 2Y73_B 2C10_B 1PU4_B 2Y74_B 3SX1_A ....
Probab=99.60 E-value=2.4e-16 Score=134.95 Aligned_cols=59 Identities=31% Similarity=0.469 Sum_probs=49.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhcC--CCCCeeEEEEEccCCChHHhhhhhcCCCCCCCceEEEE
Q 040402 6 RPLDSLSPAEFTLVQTIVKTSY--PSNNLSFHYVGLDEPDKAVVYSWLSNSKIKIPRRAIVI 65 (567)
Q Consensus 6 HPldpLs~~Ei~~a~~~l~~~~--~~~~~~f~~I~L~EP~K~~vl~~l~~~~~~p~R~A~vV 65 (567)
|||||||++||++|+++|+++. .+.+++|.+|+|.||+|++|++|..| ++.|+|+|+||
T Consensus 1 HPLdpLt~~Ei~~a~~il~~~~~~~~~~~~F~~I~L~EP~K~~vl~~~~~-~~~p~R~A~vv 61 (86)
T PF02727_consen 1 HPLDPLTAEEIQAAAAILRDAHPLAGEKNRFRSIELQEPPKAEVLAFERG-GPPPPRRARVV 61 (86)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHTGTTTTSEEEEEEEEE---HHHHHHHHCC-TTTS-EEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHhccccCCCCeEEEEEEeCCCCHHHHhccccC-CcCCCeEEEEE
Confidence 9999999999999999999987 46899999999999999999999434 34589999993
No 9
>PF04270 Strep_his_triad: Streptococcal histidine triad protein ; InterPro: IPR006270 This entry represents a repeated sequence region that includes a His-X-X-His-X-His (histidine triad) motif, which is found in family of Streptococcal proteins. Members of the family are suggested to cleave human complement component 3, and family member PhpA has been shown in vaccine studies to be a protective antigen in mice []. ; PDB: 2CS7_C.
Probab=55.44 E-value=6.5 Score=31.08 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=15.6
Q ss_pred CCCCCCHHHHHHHHHHHHh
Q 040402 7 PLDSLSPAEFTLVQTIVKT 25 (567)
Q Consensus 7 PldpLs~~Ei~~a~~~l~~ 25 (567)
|..+||+.|+++|.++|.+
T Consensus 34 ~k~dLs~~E~~aA~~~~~~ 52 (53)
T PF04270_consen 34 PKSDLSASELKAAQAYLAG 52 (53)
T ss_dssp EGGGS-HHHHHHHHHHHH-
T ss_pred chhhCCHHHHHHHHHHHhc
Confidence 6789999999999999875
No 10
>PF11148 DUF2922: Protein of unknown function (DUF2922); InterPro: IPR021321 This bacterial family of proteins has no known function.
Probab=26.47 E-value=66 Score=26.29 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=22.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcC
Q 040402 3 SCHRPLDSLSPAEFTLVQTIVKTSY 27 (567)
Q Consensus 3 s~~HPldpLs~~Ei~~a~~~l~~~~ 27 (567)
|.++|-++||.+|+++|.+.|-+..
T Consensus 18 ~i~~pk~~lt~~~V~~~m~~ii~~~ 42 (69)
T PF11148_consen 18 SIPNPKEDLTEAEVKAAMQAIIAKK 42 (69)
T ss_pred EcCCCCCCCCHHHHHHHHHHHHHhC
Confidence 5679999999999999999998864
Done!