Query 040402
Match_columns 567
No_of_seqs 159 out of 728
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 12:48:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040402.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040402hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ksi_A Copper amine oxidase; P 100.0 5E-160 2E-164 1329.7 59.6 545 5-553 2-642 (642)
2 3sxx_A Peroxisomal primary ami 100.0 2E-160 7E-165 1331.7 55.7 536 4-549 21-664 (692)
3 3loy_A Copper amine oxidase; T 100.0 4E-158 2E-162 1306.1 58.7 532 5-546 1-633 (633)
4 1w6g_A Phenylethylamine oxidas 100.0 7E-156 2E-160 1294.3 51.8 535 4-554 6-636 (646)
5 1spu_A Copper amine oxidase; o 100.0 3E-150 1E-154 1269.3 55.2 530 3-546 91-726 (727)
6 1tu5_A Copper amine oxidase, l 100.0 1E-140 5E-145 1184.9 44.1 529 4-545 39-705 (746)
7 1w7c_A Lysyl oxidase; AMNE oxi 100.0 3E-139 9E-144 1173.4 48.0 527 4-545 17-692 (747)
8 3hi7_A Amiloride-sensitive ami 100.0 2E-133 6E-138 1122.7 49.6 531 6-546 11-694 (731)
9 3pgb_A Putative uncharacterize 100.0 5E-132 2E-136 1111.9 49.4 531 5-545 65-736 (797)
10 2d0s_A Cytochrome C, cytochrom 26.5 37 0.0013 26.1 2.6 20 6-25 58-77 (79)
11 2cs7_A Pneumococcal histidine 26.3 24 0.00082 27.0 1.3 18 7-24 37-54 (55)
12 1a56_A C-551, ferricytochrome 23.0 39 0.0013 26.1 2.1 20 6-25 60-79 (81)
13 1gks_A Cytochrome C551; haloph 20.7 59 0.002 25.1 2.7 20 7-26 57-77 (78)
No 1
>1ksi_A Copper amine oxidase; PEA seedling, oxidoreductase; HET: TPQ NAG; 2.20A {Pisum sativum} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1w2z_A*
Probab=100.00 E-value=4.8e-160 Score=1329.70 Aligned_cols=545 Identities=55% Similarity=1.014 Sum_probs=505.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCC--CCCeeEEEEEccCCChHHhhhhhcC-CCCCCCceEEE------------EECCC
Q 040402 5 HRPLDSLSPAEFTLVQTIVKTSYP--SNNLSFHYVGLDEPDKAVVYSWLSN-SKIKIPRRAIV------------IDLSR 69 (567)
Q Consensus 5 ~HPldpLs~~Ei~~a~~~l~~~~~--~~~~~f~~I~L~EP~K~~vl~~l~~-~~~~p~R~A~v------------V~L~~ 69 (567)
+|||||||++||++|++||+++.+ ...++|++|+|.||+|++|++||+. ++++|+|+|+| |||++
T Consensus 2 ~HPldpLs~~Ei~~a~~iv~~~~~~~~~~~~F~~i~L~EP~K~~v~~~l~~~~~~~P~R~A~vv~~~~~~~~E~vV~L~~ 81 (642)
T 1ksi_A 2 QHPLDPLTKEEFLAVQTIVQNKYPISNNRLAFHYIGLDDPEKDHVLRYETHPTLVSIPRKIFVVAIINSQTHEILINLRI 81 (642)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHHSCTTTCCEEEEEEEECCCCHHHHHHHHHCGGGCCCCCEEEEEEEETTEEEEEEEETTT
T ss_pred CCCCCCCCHHHHHHHHHHHHhcccCCCCceEEEEEECCCCCHHHHHHHHhhcCCCCCCcEEEEEEEeCCeEEEEEEECCC
Confidence 699999999999999999999875 4678899999999999999999853 23578999999 88999
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHHHHhhhccCHHHHHHHHHcCCCcccc-------------cCceEEEEEEEeeeCCCC
Q 040402 70 RSIVSDKVYTGHGFPLLTLEEQRTGAAPVLAYEPFKASVKKRGLNISDV-------------ESKRELKFPCFYTDQGTV 136 (567)
Q Consensus 70 ~~v~~~~~~~~~~~p~~~~eE~~~~~~~~~~~p~~~~a~~~rgl~~~~v-------------~~rR~~~~~~~~~~~~~~ 136 (567)
++|++++..+..+||+++.+||.+++++|++||.|+++|++|||++..| +++|++|++||++ .+++
T Consensus 82 ~~v~~~~~~~~~g~p~~~~~E~~~~e~~~~~~p~~~~~~~~~gl~~~~v~~~pw~~g~~~~~~~~Rl~~~~~~~~-~~~~ 160 (642)
T 1ksi_A 82 RSIVSDNIHNGYGFPILSVDEQSLAIKLPLKYPPFIDSVKKRGLNLSEIVCSSFTMGWFGEEKNVRTVRLDCFMK-ESTV 160 (642)
T ss_dssp TEEEEEEECCSSCBCCCCHHHHHHHTTGGGGCHHHHHHHHHTTCCGGGEEEEEECCCCCSCSCCCCEEEEEEEEC-SSCS
T ss_pred CcEEEEEeccCCCcCCCCHHHHHHHHHHhhcCHHHHHHHHhcCCCccceEEecccccCCCCCCCcEEEEEEEEEe-cCCC
Confidence 9998866666556999999999999999999999999999999976555 3599999999999 6688
Q ss_pred CcccCCCCCeEEEEecCCceEEEEeCCccccCCCCCCCCCCcCCCCCCCCCCCCCCcc-CCCCCeeEEeCcEEeecceEE
Q 040402 137 NMFLRPIEGITIVVDIEEMKVTQYNDREVAPIPKSEPTEYRWSKLKPPFGPRLNSVTT-LPTGPGFKIDGNTVKWANWVF 215 (567)
Q Consensus 137 n~yahPi~gl~~~vD~~~~~v~~i~d~~~~~~p~~~~~~y~~~~~~~~~r~~~kP~~i-qPeG~sf~v~g~~V~w~~W~f 215 (567)
|+|+||||||+++||++++||++|+|.+.+++|+.++.+|+++++.+++|+++||++| ||||+||+|+|++|+||||+|
T Consensus 161 n~Ya~Pl~Gl~~vvD~~~~~V~~i~d~~~~~~p~~~~~~y~~~~~~~~~r~~lkP~~i~QPeG~sF~V~G~~V~W~~W~f 240 (642)
T 1ksi_A 161 NIYVRPITGITIVADLDLMKIVEYHDRDIEAVPTAENTEYQVSKQSPPFGPKQHSLTSHQPQGPGFQINGHSVSWANWKF 240 (642)
T ss_dssp CGGGSEECSEEEEEETTTTEEEEEEECCCCCCCCCTTCCCCSTTCCSCCCCCCCCBEEECTTCCSCEEETTEEEETTEEE
T ss_pred cccccccCceEEEEECCCCEEEEEEccCCccCCCCCCCCccccccCCCCCCCCCCceecCCCCCCEEEeCcEEeeCCceE
Confidence 9999999999999999999999999887777887777789988766678999999999 999999999999999999999
Q ss_pred EEeecCCccceEEccEEecCCCCcccC------------------------------------------CCCCCCCCcEE
Q 040402 216 NVGFDARVGTIISTASIYDVDMHKYRR------------------------------------------PLKDCPPNAVF 253 (567)
Q Consensus 216 ~~~f~~reGl~L~~v~~~d~r~~~~R~------------------------------------------~G~DCpg~a~Y 253 (567)
|||||+||||+||||+|+|++.|..|. +||||||+|+|
T Consensus 241 ~vgf~~reGlvL~dv~y~d~~~g~~r~V~YrlSl~Em~VPYgdP~~~~~~k~~fD~GeyG~G~~a~~L~~GcDCpg~i~Y 320 (642)
T 1ksi_A 241 HIGFDVRAGIVISLASIYDLEKHKSRRVLYKGYISELFVPYQDPTEEFYFKTFFDSGEFGFGLSTVSLIPNRDCPPHAQF 320 (642)
T ss_dssp EEEEETTTEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEBCCCSTTTTTCEECHHHHHCTTTTBCCCCBTTTBCTTCEE
T ss_pred EEecCCCcccEEEEEEEecCCCCCceEEEEEeeeeeEEEeCCCCCcccccceeeeccccCccccccccccCCCCCCCCEE
Confidence 999999999999999998755442222 89999999999
Q ss_pred eeeEEEcCCCceeEeCcceEEeeecCCCccccccccCCCCc-eeeeeeceEEEEEEEEEeeccceEEEEEEeeCccEEEE
Q 040402 254 IDGYFTSQDGAPIQTPNAICIFERHTGDVMWRHTEAEMPGD-VREVRPEVSLVVRMVATVGNYDYVIDWEFKPSGSIKLG 332 (567)
Q Consensus 254 lD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~-~~~~r~~~~LVvr~i~TVgNYdYi~~~~F~~dGtIe~~ 332 (567)
||+++.+++|+|++++|||||||+| +||||||+|+++++. ++.+|++++||||+|+|||||||||+|+|||||+||++
T Consensus 321 ~D~~~~~~~G~p~~~~naiCihE~d-~gilwkH~~~r~~~~~~~~v~r~r~LVvr~i~TV~NYdYif~w~F~qdG~Ie~e 399 (642)
T 1ksi_A 321 IDTYVHSANGTPILLKNAICVFEQY-GNIMWRHTENGIPNESIEESRTEVNLIVRTIVTVGNADNVIDWEFKASGSIKPS 399 (642)
T ss_dssp EEEEEECTTCCEEEEEEEEEEEEEE-EEEEEEEEECCSTTCCEEEEEEEEEEEEEEEEEETTEEEEEEEEECTTSCEEEE
T ss_pred eeeEEecCCCCEEEcCCEEEEEecc-CCcceeeccccCCCceeeeeeeccEEEEEEEEeecccceEEEEEEecCceEEEE
Confidence 9999999999999999999999999 999999999998764 46677778999999999999999999999999999998
Q ss_pred EEEeeeEEeecccc--------ccCCCCccccCCcccccccEEEeeeeeecccCCCCeEEEEEE----------------
Q 040402 333 CKVRPVEYTHIDQI--------KEDQQGKLVADNTIGVNHDHFLNYYLDLDIDGYANSFEKTKL---------------- 388 (567)
Q Consensus 333 v~v~atg~~~~~~~--------~~~~yG~~V~~~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~---------------- 388 (567)
| +||||+++... .+.+|||+|+|+++|++|||+|||||||||||++|||+++|+
T Consensus 400 v--~aTGil~t~~~~~~~~~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIdG~~Nsv~~~~~~~~~~~~~~np~~~~~ 477 (642)
T 1ksi_A 400 I--ALSGILEIKGTNIKHKDEIKEDLHGKLVSANSIGIYHDHFYIYYLDFDIDGTHNSFEKTSLKTVRIKDGSSKRKSYW 477 (642)
T ss_dssp E--EEEECCCEEECSCCSGGGCCSCCSEEEEETTEEEECEEEEEEEEEEECTTSSCBEEEEEEEEEEECCSSCSSCSEEE
T ss_pred E--EEEEEEEecccccccccccccCCCcceecCCcccccceEEEEEeeccCCCCCCCeEEEEeeEecCCCCCCCCCcceE
Confidence 7 99999985332 136899999999999999999999999999999999999988
Q ss_pred EEEEEeeeChHhHhhccCCCCcEEEEEcCCCCCCCCCceeEEEecCCCcCCCCCCCCcccccccccceeeEEeecCCCCC
Q 040402 389 TVEKETAKTEFEARLKLDTKPMEFAMVNPNKKTKIGHPVGYRLLPGLVVGPLLTDDDYPQIRAGFTDYNIWVTPYNKSEK 468 (567)
Q Consensus 389 ~~~~~~~~tE~~a~~~~~~~~r~~~i~N~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~~~E~ 468 (567)
++++++++||++|+++++..+|+|+|+|++++|++|+|+||||+|+++++++++++|+.++||+||+|+||||||+|+|+
T Consensus 478 ~~~~t~~~tE~ea~~~~~~~~r~~~i~N~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~~~Ra~fa~~~lwVT~y~d~E~ 557 (642)
T 1ksi_A 478 TTETQTAKTESDAKITIGLAPAELVVVNPNIKTAVGNEVGYRLIPAIPAHPLLTEDDYPQIRGAFTNYNVWVTAYNRTEK 557 (642)
T ss_dssp EEEEEECCBGGGGCBCTTSSCEEEEEEEEEEECTTSCEEEEEEECCSCCCCCSCTTSHHHHHTGGGGCSEEEEECCTTCC
T ss_pred EEEEEEccchhhhhhccCCCceEEEEEcCCCcCCCCCeeeEEEccCCcccccCCCcchhhhhhhccccceEEecCCCCcc
Confidence 57889999999999999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCccCCCCCCChhhhccCCCceeeCCeEEEEEeccccCCCCCCCCCccceeeeEEEEeCCCCCCCCcccCCCCCCC
Q 040402 469 YSGGNYVDQSHGDDTLLQWTDGNREIENKDIVLWYTMGIHHAPCQEDFPVMPTVSGGFELRPTNFFEYNPVLKVIPPKHV 548 (567)
Q Consensus 469 ~asg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~H~Pr~ED~Pvmp~~~~~f~L~P~nFFd~nP~ldvp~~~~~ 548 (567)
||||+|++|+++++|+.+|+++||+|+|+|||+|||||+||+||+|||||||++++||+|||+|||++||+||+|++.++
T Consensus 558 ~a~g~y~~qs~~~~gl~~~~~~~~~i~~~DiV~W~t~G~~H~Pr~ED~PvMp~~~~~f~L~P~nFF~~nP~ldvp~~~~~ 637 (642)
T 1ksi_A 558 WAGGLYVDHSRGDDTLAVWTKQNREIVNKDIVMWHVVGIHHVPAQEDFPIMPLLSTSFELRPTNFFERNPVLKTLSPRDV 637 (642)
T ss_dssp CTTCSCCBTCCSSSSHHHHGGGCCBCSSBCEEEEEEEEEEECCCGGGSSSCCCEEEECEEEESSCSSSCTTTTCCCCCBC
T ss_pred CCCCCCccCCCCCCChhhhhhCCCccccCCcEEEEecccccCCChhhCCCCccceEEEEEEeCCCCCCCCCccCCCCccC
Confidence 99999999999989999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 040402 549 QWPNC 553 (567)
Q Consensus 549 ~~~~~ 553 (567)
++|.|
T Consensus 638 ~~~~~ 642 (642)
T 1ksi_A 638 AWPGC 642 (642)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 99998
No 2
>3sxx_A Peroxisomal primary amine oxidase; oxidoreductase, peroxisome; HET: GOL; 1.27A {Pichia angusta} PDB: 3sx1_A* 3t0u_A 3n9h_A* 3nbj_A* 3nbb_A* 2oqe_C* 2oov_C* 2oqe_A* 2oov_A* 1ekm_A 1a2v_A*
Probab=100.00 E-value=2.1e-160 Score=1331.75 Aligned_cols=536 Identities=27% Similarity=0.454 Sum_probs=497.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCeeEEEEEccCCChHHhhhhhcCCCCCCCceEEE--------------EECCC
Q 040402 4 CHRPLDSLSPAEFTLVQTIVKTSYPSNNLSFHYVGLDEPDKAVVYSWLSNSKIKIPRRAIV--------------IDLSR 69 (567)
Q Consensus 4 ~~HPldpLs~~Ei~~a~~~l~~~~~~~~~~f~~I~L~EP~K~~vl~~l~~~~~~p~R~A~v--------------V~L~~ 69 (567)
++|||||||++||++|++||+++..+..++|++|+|.||+|++|++|+++..++|+|+|+| |||++
T Consensus 21 ~~HPLDpLs~~Ei~~a~~iv~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~~~p~R~a~v~~~~~~~~~~~e~vVdl~~ 100 (692)
T 3sxx_A 21 PAHPLDPLSTAEIKAATNTVKSYFAGKKISFNTVTLREPARKAYIQWKEQGGPLPPRLAYYVILEAGKPGVKEGLVDLAS 100 (692)
T ss_dssp CSSTTSCCCHHHHHHHHHHHHHHTTTSCEEEEEEEEECCCHHHHHHHHHSCCCCCCCEEEEEEEETTCSSEEEEEEETTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCCcEEEEEECCCCCHHHHHHHHhcCCCCCCeEEEEEEEECCCCCEEEEEEECCC
Confidence 4699999999999999999999877788999999999999999999999855688999999 89999
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHHHHhhhccCHHHHHHHHHcCCCc---ccc--------------cCceEEEEEEEeee
Q 040402 70 RSIVSDKVYTGHGFPLLTLEEQRTGAAPVLAYEPFKASVKKRGLNI---SDV--------------ESKRELKFPCFYTD 132 (567)
Q Consensus 70 ~~v~~~~~~~~~~~p~~~~eE~~~~~~~~~~~p~~~~a~~~rgl~~---~~v--------------~~rR~~~~~~~~~~ 132 (567)
++|++++.+++ .||+++.|||.++|++|++||+|+++|++|||+. +.| .+||++|++||+|.
T Consensus 101 ~~v~~~~~~~~-~~p~~~~ee~~~~e~~~~~~p~~~~a~~~rgl~~~~~~~V~~dpw~~G~~~~~~~~~Rl~~~~~y~r~ 179 (692)
T 3sxx_A 101 LSVIETRALET-VQPILTVEDLCSTEEVIRNDPAVIEQCVLSGIPANEMHKVYCDPWTIGYDERWGTGKRLQQALVYYRS 179 (692)
T ss_dssp TEEEEEEEETT-CCCCCCHHHHHTHHHHHHHCHHHHHHHHHTTCCGGGGGGEEEEEEECCCCTTTTTSSCEEEEEEEECS
T ss_pred CeEEEEEECCC-CcCCcCHHHHHHHHHHHHhCHHHHHHHHHcCCCccccceEEEccccccccCCCCCCceEEEEEEEEec
Confidence 99999998885 6899999999999999999999999999999943 335 25899999999996
Q ss_pred CCCCCcccCCCCCeEEEEecCCceEEEEeCCcc-ccCCCCCCCCCCcCCCC--CCCCC-CCCCCcc-CCCCCeeEEeCcE
Q 040402 133 QGTVNMFLRPIEGITIVVDIEEMKVTQYNDREV-APIPKSEPTEYRWSKLK--PPFGP-RLNSVTT-LPTGPGFKIDGNT 207 (567)
Q Consensus 133 ~~~~n~yahPi~gl~~~vD~~~~~v~~i~d~~~-~~~p~~~~~~y~~~~~~--~~~r~-~~kP~~i-qPeG~sf~v~g~~ 207 (567)
.+++|+|||||| |.++||++++||++|++... .|+|+.+..+|+++++. +++|+ ++||++| ||||+||+|+|++
T Consensus 180 ~~~~N~Ya~Pl~-~~~vvD~~~~~vi~id~~~~~~p~~~~~~~~Y~p~~~~~~~~~r~~d~kP~~i~QPeG~sF~v~g~~ 258 (692)
T 3sxx_A 180 DEDDSQYSHPLD-FCPIVDTEEKKVIFIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEGVSFKMTGNV 258 (692)
T ss_dssp STTSCGGGCBCS-CEEEEETTTTEEEEEECCSSCCCCCCSCCCCCSHHHHHHHHSSCCCCCCCCEEECTTCCSCEEETTE
T ss_pred CCCCCcccccce-eEEEEECCCCEEEEEecCCCCCCCCCCCCCCCChHHccccCCCCCCCCCCceecCCCCCcEEEcCCe
Confidence 668999999999 99999999999999998766 56777777899987654 46898 9999999 9999999999999
Q ss_pred EeecceEEEEeecCCccceEEccEEecCCCCcccC------------------------------------------CCC
Q 040402 208 VKWANWVFNVGFDARVGTIISTASIYDVDMHKYRR------------------------------------------PLK 245 (567)
Q Consensus 208 V~w~~W~f~~~f~~reGl~L~~v~~~d~r~~~~R~------------------------------------------~G~ 245 (567)
|+||||+||+|||+||||+||||+|+| .|..|+ +||
T Consensus 259 V~W~~W~F~vgf~~reGlvL~dV~y~~--~g~~R~V~YrlSl~Em~VPYgdp~~p~~~k~afD~GeyG~G~~an~L~lGc 336 (692)
T 3sxx_A 259 MEWSNFKFHIGFNYREGIVLSDVSYND--HGNVRPIFHRISLSEMIVPYGSPEFPHQRKHALDIGEYGAGYMTNPLSLGC 336 (692)
T ss_dssp EEETTEEEEEEEETTTEEEEEEEEEEE--TTEEEEEEEEEEEEEEEEEBCCCSTTGGGCEECHHHHTCTTTTBCCCTTTT
T ss_pred EEecCcEEEEecCCCCceEEEEEEEcC--CCcceeeeeeeehheeEEecCCCCchhhhheeeeccccCCCccccccccCC
Confidence 999999999999999999999999988 332222 899
Q ss_pred CCCCCcEEeeeEEEcCCCceeEeCcceEEeeecCCCccccccccCCC--Cc-eeeeeeceEEEEEEEEEeeccceEEEEE
Q 040402 246 DCPPNAVFIDGYFTSQDGAPIQTPNAICIFERHTGDVMWRHTEAEMP--GD-VREVRPEVSLVVRMVATVGNYDYVIDWE 322 (567)
Q Consensus 246 DCpg~a~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~~~--~~-~~~~r~~~~LVvr~i~TVgNYdYi~~~~ 322 (567)
||||+|+|||+++.+++|+|++++|||||||+|. ||||||++++++ .. ++|+| +||||+|+|||||||||+|+
T Consensus 337 DCpg~i~YlD~~~~~~~G~p~~~~NaICihE~d~-Gil~kHt~~r~~~~~~~v~r~r---~LVvr~i~TVgNYDYif~w~ 412 (692)
T 3sxx_A 337 DCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDD-GLLFKHSDFRDNFATSLVTRAT---KLVVSQIFTAANYEYCLYWV 412 (692)
T ss_dssp TSCSSCEEEEEEEECTTSCEEEEEEEEEEEEEEE-EEEEEEECGGGTTCSEEEEEEE---EEEEEEEEEETTEEEEEEEE
T ss_pred CCCCCcEEeeeEEecCCCCEEEecceEEEeeccC-CceEEeeeccCCCceeeEEecc---EEEEEEeeeccceeEEEEEE
Confidence 9999999999999999999999999999999995 599999999876 44 45555 99999999999999999999
Q ss_pred EeeCccEEEEEEEeeeEEeeccccc----cCCCCccccCCcccccccEEEeeeeeecccCCCCeEEEEEE----------
Q 040402 323 FKPSGSIKLGCKVRPVEYTHIDQIK----EDQQGKLVADNTIGVNHDHFLNYYLDLDIDGYANSFEKTKL---------- 388 (567)
Q Consensus 323 F~~dGtIe~~v~v~atg~~~~~~~~----~~~yG~~V~~~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~---------- 388 (567)
|||||+||++| +||||+++..+. +.+||++|+|+++|++|||+|||||||||||.+|||+++|+
T Consensus 413 F~qdG~Ie~ev--~aTGil~t~~~~~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~~~~~ 490 (692)
T 3sxx_A 413 FMQDGAIRLDI--RLTGILNTYILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSSPYPLGSP 490 (692)
T ss_dssp ECTTSCEEEEE--EEEECCCCEECCTTCCCTTTEEEEETTEEEECEEEEEEEEEEECTTSSCBEEEEEEEEECSSCTTBT
T ss_pred EecCCeEEEEE--EEEEEEEeeeeCCCcccCCCcceecCCccccceeEEEEEEeccccCCCCceEEEEEeEEccCCCCCC
Confidence 99999999987 999999976653 36899999999999999999999999999999999999998
Q ss_pred --------EEEEEeeeChHhHhhccCC-CCcEEEEEcCCCCCCC-CCceeEEEecCCCcCCCCCCCCcccccccccceee
Q 040402 389 --------TVEKETAKTEFEARLKLDT-KPMEFAMVNPNKKTKI-GHPVGYRLLPGLVVGPLLTDDDYPQIRAGFTDYNI 458 (567)
Q Consensus 389 --------~~~~~~~~tE~~a~~~~~~-~~r~~~i~N~~~~N~~-G~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~l 458 (567)
++++++++||++|+++++. ++|+|+|+|++++|++ |+|+||||+|++++++|+.++|+.++||+||+|+|
T Consensus 491 ~np~g~~~~~~~t~~~tE~ea~~~~~~~~~R~~~i~N~~~~N~~sG~pvgYkL~p~~~~~ll~~~~s~~~~ra~fa~~~l 570 (692)
T 3sxx_A 491 ENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLVSTQCPPLLAKEGSLVAKRAPWASHSV 570 (692)
T ss_dssp TBTTSCCEEEEEEECCBHHHHCBCCCGGGTCEEEEECTTCCCTTTCSCCEEEEECCCCCCCCSCTTSHHHHHCGGGGSSE
T ss_pred CCCCcceeEEEEEEccchhhhhhccCCCCCcEEEEeCCCCcCCCCCccceEEEecCCCCcccCCCCchhhhhchhcccce
Confidence 6788999999999999999 9999999999999999 99999999999999999999999999999999999
Q ss_pred EEeecCCCCCCCCCcCccCCCCC--CChhhhc-cCCCceeeCCeEEEEEeccccCCCCCCCCCccceeeeEEEEeCCCCC
Q 040402 459 WVTPYNKSEKYSGGNYVDQSHGD--DTLLQWT-DGNREIENKDIVLWYTMGIHHAPCQEDFPVMPTVSGGFELRPTNFFE 535 (567)
Q Consensus 459 wVT~y~~~E~~asg~y~~q~~~~--~~l~~~~-~~~e~i~~~DiV~W~t~G~~H~Pr~ED~Pvmp~~~~~f~L~P~nFFd 535 (567)
|||||+|+|+||||+|+||+.++ .||++|+ ++||+|+|||||+|+|||+||+||+|||||||++++||+|||+|||+
T Consensus 571 wVT~y~d~E~~aag~y~nQs~g~p~~gl~~w~~~~~e~I~n~DiV~W~t~G~~HiPr~ED~PvMP~~~~gf~LrP~nFFd 650 (692)
T 3sxx_A 571 NVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDILFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFT 650 (692)
T ss_dssp EEEECCTTCCCTTCSSCTTCCSCSSCHHHHHHTTSCSBCSSBCEEEEEEEEEEECCCGGGSSSCCCEEEEEEEEEESSSS
T ss_pred EEecCCCCccCCCCCCccCCCCCCCCChHHHhhcCCceeecCceEEEEecCcccCCchhcCCCCcceEEEEEEECCCcCC
Confidence 99999999999999999999887 6999999 89999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCCCC
Q 040402 536 YNPVLKVIPPKHVQ 549 (567)
Q Consensus 536 ~nP~ldvp~~~~~~ 549 (567)
+||+||||++.+..
T Consensus 651 ~NPaldvp~~~~~~ 664 (692)
T 3sxx_A 651 ENPGLDIQPSYAMT 664 (692)
T ss_dssp SCTTTTSCCSEEEC
T ss_pred CCCcccCCCccccc
Confidence 99999999986554
No 3
>3loy_A Copper amine oxidase; TPQ, oxidoreductase; HET: TPQ TLA; 2.00A {Pichia angusta}
Probab=100.00 E-value=4.5e-158 Score=1306.10 Aligned_cols=532 Identities=24% Similarity=0.393 Sum_probs=489.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCC-CCeeEEEEEccCCChHHhhhhhcC----C-CCCCCceEEE------------EE
Q 040402 5 HRPLDSLSPAEFTLVQTIVKTSYPS-NNLSFHYVGLDEPDKAVVYSWLSN----S-KIKIPRRAIV------------ID 66 (567)
Q Consensus 5 ~HPldpLs~~Ei~~a~~~l~~~~~~-~~~~f~~I~L~EP~K~~vl~~l~~----~-~~~p~R~A~v------------V~ 66 (567)
.|||||||++||++|++||+++..+ ..++|++|+|.||+|++|++||++ . .++|+|+|+| ||
T Consensus 1 ~HPLdpLs~~Ei~~a~~iv~~~~~~~~~~~F~~i~L~EP~K~~v~~~l~~~~~g~~~~~p~R~a~v~~~~~~~~~e~vVd 80 (633)
T 3loy_A 1 VHPYDPISDAELQLTSQLIKDATKGPERPHFIQIDRLDPPKKDMIRYLEAERTGKPLPHISRMTYVYYYIGLDFYKALVN 80 (633)
T ss_dssp CCTTCCCCHHHHHHHHHHHHHHCCSSSCEEEEEEEECCCCHHHHHHHHHHHHHTCCCCCCCCEEEEEEEETTEEEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEECCCCCHHHHHHHHhhhhcCCCCCCCCcEEEEEEEeCCCEEEEEEE
Confidence 4999999999999999999998766 789999999999999999999863 2 2577899998 89
Q ss_pred CCCCcEEEEEEecCCCCCCCCHHHHHHHHhhhccCHHHHHHHHHcCCC-cccc------------cCceEEEEEEEeee-
Q 040402 67 LSRRSIVSDKVYTGHGFPLLTLEEQRTGAAPVLAYEPFKASVKKRGLN-ISDV------------ESKRELKFPCFYTD- 132 (567)
Q Consensus 67 L~~~~v~~~~~~~~~~~p~~~~eE~~~~~~~~~~~p~~~~a~~~rgl~-~~~v------------~~rR~~~~~~~~~~- 132 (567)
|++++|++++.+++++||+++.|||.++|++|++||.|+++|++|||+ .+.| ++||++||+||+|.
T Consensus 81 l~~~~v~~~~~~~~~~~p~~~~~e~~~~e~~~~~~p~~~~a~~~~gl~~~~~V~~dpw~~G~d~~~~~Rl~q~~~y~r~~ 160 (633)
T 3loy_A 81 VSYGHIITNQKQPKGVIGPLIAEDIQEIEELATTHPIVKAEIEKLKLPPHVRVVCDPWMNGTDSKEDRMLIQCYMYLASA 160 (633)
T ss_dssp TTTTEEEEEEECCTTCCCCCCHHHHHHHHHHHTTSHHHHHHHHTTCCCTTEEEEEEEEECCCSSCCCSCEEEEEEEEEET
T ss_pred CCCCeEEEEEecCCCccCCCCHHHHHHHHHHHHhCHHHHHHHHHcCCCCCceEEEeccccccCCCCCcEEEEEEEEEecC
Confidence 999999999999876899999999999999999999999999999995 3555 25999999999996
Q ss_pred -CCCCCcccCCCCCeEEEEecCCceEEEEeCCcc---------ccCCCCCCCCCCcCCCCCCCCCCCCCCcc-CCCCCee
Q 040402 133 -QGTVNMFLRPIEGITIVVDIEEMKVTQYNDREV---------APIPKSEPTEYRWSKLKPPFGPRLNSVTT-LPTGPGF 201 (567)
Q Consensus 133 -~~~~n~yahPi~gl~~~vD~~~~~v~~i~d~~~---------~~~p~~~~~~y~~~~~~~~~r~~~kP~~i-qPeG~sf 201 (567)
++++|+|||||+ |.++||++++||++|++... .|+++.+..+|+++++. ++|+++||++| ||||+||
T Consensus 161 ~~~~~N~Ya~Pl~-~~~vvD~~~~~vi~id~~~~g~~~~~~~~~p~~~~~~~~Y~p~~~~-~~r~d~kp~~i~QPeG~sF 238 (633)
T 3loy_A 161 AHPESNHYSLPLK-FSPVFECLTKKFVRMDYLPGGADETVTETQAWDEFPFVEYHPDLNG-ETIVPLKPLIVQQPEGPSF 238 (633)
T ss_dssp TCTTCCGGGSBCS-EEEEEETTTCCEEEEEECCCSSSSCCCSCCCCCCCCCCCCSTTTSC-CCCCCCCCCEEECTTCCSE
T ss_pred CCCCccccccccc-eEEEEECCCCEEEEEEecCcCcccccccccCCCCCCCCCcChhHcc-cccCCCCCcceeCCCCCCE
Confidence 568999999998 88999999999999986411 13445567899988764 48999999999 9999999
Q ss_pred EEeCcEEeecceEEEEeecCCccceEEccEEec------------------CCCCcccC------------------CCC
Q 040402 202 KIDGNTVKWANWVFNVGFDARVGTIISTASIYD------------------VDMHKYRR------------------PLK 245 (567)
Q Consensus 202 ~v~g~~V~w~~W~f~~~f~~reGl~L~~v~~~d------------------~r~~~~R~------------------~G~ 245 (567)
+|+|++|+||||+||||||+||||+||||+|+| ++....|+ +||
T Consensus 239 ~v~g~~V~W~~W~f~vgf~~reGlvL~dv~y~gr~V~YrlSl~Em~VPYgdp~~p~~~k~afD~GeyG~G~~a~~L~~Gc 318 (633)
T 3loy_A 239 NVDGHKISWQGWEFFVIPTVREGFAIYDIHFKGRSVVYRLSLSEMTVPYGDPRAPFHRKQAFDLGDCGFGATGNSLALGC 318 (633)
T ss_dssp EEETTEEEETTEEEEEEEETTTEEEEEEEEETTEEEEEEEEEEEEEEEBCCCSTTGGGCEEEHHHHTCTTTTBCCSTTTT
T ss_pred EEcCCccccCCcEEEEecCCCcCcEEEeeEECCEEEEEEEEeeeEEEeCCCCCChhhhheeecccccCccccccCCccCC
Confidence 999999999999999999999999999999965 22333343 899
Q ss_pred CCCCCcEEeeeEEEcCCCceeEeCcceEEeeecCCCccccccccCCCCc-eeeeeeceEEEEEEEEEeeccceEEEEEEe
Q 040402 246 DCPPNAVFIDGYFTSQDGAPIQTPNAICIFERHTGDVMWRHTEAEMPGD-VREVRPEVSLVVRMVATVGNYDYVIDWEFK 324 (567)
Q Consensus 246 DCpg~a~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~-~~~~r~~~~LVvr~i~TVgNYdYi~~~~F~ 324 (567)
||||+|+|||+++.+++|+|++++|||||||+| .|++|||++++++.+ ++|+| +||||+|+|||||||||+|+||
T Consensus 319 DCpg~i~YlD~~~~~~~G~p~~~~naICihE~d-~Gi~~kHt~~r~~~~~v~r~r---~LVvr~i~TVgNYdYif~w~F~ 394 (633)
T 3loy_A 319 DCLGVIKYMDCRRVNTNGDSVLIPNTVCLHEQD-GGLLYKHTNYRTNVPVIARRR---EFVVQTIATVANAEYMLNIIFD 394 (633)
T ss_dssp CSCSSEEEEEEEEECTTSCEEEEEEEEEEEEEE-EEEEEEEECTTTCCEEEEEEE---EEEEEEEEEETTEEEEEEEEEE
T ss_pred CCCCCcEEeeeEEecCCCCEEEecceEEEEecc-CCceeeeccccCCceeEEEee---EEEEEEEeeccceeEEEEEEEe
Confidence 999999999999999999999999999999999 569999999998876 66666 9999999999999999999999
Q ss_pred eCccEEEEEEEeeeEEeeccccc---cCCCCccccCCcccccccEEEeeeeeecccCCCCeEEEEEE-------------
Q 040402 325 PSGSIKLGCKVRPVEYTHIDQIK---EDQQGKLVADNTIGVNHDHFLNYYLDLDIDGYANSFEKTKL------------- 388 (567)
Q Consensus 325 ~dGtIe~~v~v~atg~~~~~~~~---~~~yG~~V~~~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~------------- 388 (567)
|||+||++| +||||+++..+. +.+||++|+|+++|++|||+|||||||||||.+|||++.|+
T Consensus 395 ~dG~Ie~ev--~aTGil~t~~~~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~~~~nP~g 472 (633)
T 3loy_A 395 QAGEIRIHV--RATGILSTMPLDKDVTVPWGTNVGPRVMAAYHQHMLSFRIDPAVDGYENTVVFDDVIRMEKNTKLNPYN 472 (633)
T ss_dssp TTSCEEEEE--EEEECCCCEECCTTCCCTTEEEEETTEEEECEEEEEEEEEEECTTSSCBEEEEEEEEECCSSSSSSTTS
T ss_pred cCCeEEEEE--EEEEEEeeeecCCcccCCCcceecCCccccceeEEEEEEecccccCCCCEEEEEeeeecCCCCCCCCCC
Confidence 999999987 999999987653 47899999999999999999999999999999999999996
Q ss_pred ---EEEEEeeeChHhHhhccCC-CCcEEEEEcCCCCCCC-CCceeEEEecCCCcCCCCCCCCcccccccccceeeEEeec
Q 040402 389 ---TVEKETAKTEFEARLKLDT-KPMEFAMVNPNKKTKI-GHPVGYRLLPGLVVGPLLTDDDYPQIRAGFTDYNIWVTPY 463 (567)
Q Consensus 389 ---~~~~~~~~tE~~a~~~~~~-~~r~~~i~N~~~~N~~-G~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y 463 (567)
+++++++++| |+++++. ++|+|+|+|++++|++ |+|+||||+|++++++|+.++|+.++||+||+|+||||||
T Consensus 473 ~~~~~~~t~l~~e--a~~~~~~~~~r~~~i~N~~~~N~~~G~p~gYkl~p~~~~~ll~~~~s~~~~Ra~fa~~~lwVT~y 550 (633)
T 3loy_A 473 VGFVTERTVVEKP--GYVEQSPFTNRSYKIINENKINPISKKPVAYKIMMPARQMLLADEDSYNNKRAQFATQQVWVTKY 550 (633)
T ss_dssp CCEEEEEEECCSS--EEECCCGGGTCEEEEEEEEEECTTTCSEEEEEEECCCCCCCCSCSSSHHHHHCGGGGSSEEEEEC
T ss_pred cceEEEEEEeccc--cccccCCCCccEEEEECCCCcCCCCCccceEEEccCCCCcccCCCCchhhhccchhhcceEEecC
Confidence 7788889886 7899999 9999999999999995 9999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcCccCCCCCCChhhhccCCCceeeCCeEEEEEeccccCCCCCCCCCccceeeeEEEEeCCCCCCCCcccCC
Q 040402 464 NKSEKYSGGNYVDQSHGDDTLLQWTDGNREIENKDIVLWYTMGIHHAPCQEDFPVMPTVSGGFELRPTNFFEYNPVLKVI 543 (567)
Q Consensus 464 ~~~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~H~Pr~ED~Pvmp~~~~~f~L~P~nFFd~nP~ldvp 543 (567)
+|+|+||||+|+||+.+++||++|+++||+|+|||||+|+|||+||+||+|||||||++++||+|||+|||++||+||||
T Consensus 551 ~d~E~~aag~y~nQs~~~~gl~~w~~~~e~i~n~DiV~W~t~G~~HiPr~ED~PvMP~~~~~f~LrP~nFFd~nP~ldvp 630 (633)
T 3loy_A 551 RDNELYAAGEFTNQSQTDTGLGVWARRDENVRNDNPVVWATLGFTHIPRVEDFPVMPVEAHEIALVPFGFFDKNPALSVP 630 (633)
T ss_dssp CTTCCCTTCSCCTTCSSCCSHHHHTTCCCCCTTBCEEEEEEEEEEECCCGGGCSSEEEEEEEEEEEEESSSSSCGGGGSC
T ss_pred CCCccccCCCCccCCCCCCChHHHhcCCCccccCceEEEEecCcccCCCcccCCCCccceeeEEEEcCCcCCCCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 040402 544 PPK 546 (567)
Q Consensus 544 ~~~ 546 (567)
+|+
T Consensus 631 ~s~ 633 (633)
T 3loy_A 631 QST 633 (633)
T ss_dssp CCC
T ss_pred CCC
Confidence 984
No 4
>1w6g_A Phenylethylamine oxidase; copper containing, metal-binding, oxidoreductase, TPQ, quinone, holoenzyme; HET: TPQ GOL; 1.55A {Arthrobacter globiformis} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1w6c_A* 1rjo_A* 2bt3_A* 2cfd_A* 2cfg_A* 2cfk_A* 2cfl_A* 2cfw_A* 2cg0_A* 2cg1_A* 1w4n_A* 1sih_A* 1sii_A* 1w5z_A* 3kii_A* 3kn4_A* 1iqy_A* 1avl_A* 1av4_A* 1iqx_A* ...
Probab=100.00 E-value=6.5e-156 Score=1294.33 Aligned_cols=535 Identities=26% Similarity=0.448 Sum_probs=485.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCC-CCCeeEEEEEccCCChHHhhhhhcCCCCCCCceEEE--------------EECC
Q 040402 4 CHRPLDSLSPAEFTLVQTIVKTSYP-SNNLSFHYVGLDEPDKAVVYSWLSNSKIKIPRRAIV--------------IDLS 68 (567)
Q Consensus 4 ~~HPldpLs~~Ei~~a~~~l~~~~~-~~~~~f~~I~L~EP~K~~vl~~l~~~~~~p~R~A~v--------------V~L~ 68 (567)
.+|||||||++||++|++||+++.. +..++|++|+|+||+|++ | +++|+|+|+| |||+
T Consensus 6 ~~HPldpLs~~Ei~~a~~iv~~~~~~~~~~~F~~i~L~eP~K~~------g-~~~P~R~A~vv~~~~~~~~~~E~vV~L~ 78 (646)
T 1w6g_A 6 TASPFRLASAGEISEVQGILRTAGLLGPEKRIAYLGVLDPARGA------G-SEAEDRRFRVFIHDVSGARPQEVTVSVT 78 (646)
T ss_dssp -CCTTCCCCHHHHHHHHHHHHHTTCCCTTEEEEEEEECCCCSCC------S-SSCCCCEEEEEEEETTSCCCEEEEEETT
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcccCCCCcEEEEEEccCCchhh------C-CCCCCeEEEEEEEECCCCcEEEEEEECC
Confidence 4699999999999999999999876 678999999999999998 3 2478999999 8899
Q ss_pred CCcEEE---EEEecCCCCCCCCHHHHHHHHhhhccCHHHHHHHHHcCCC-cccc--------------cCceEEEEEEEe
Q 040402 69 RRSIVS---DKVYTGHGFPLLTLEEQRTGAAPVLAYEPFKASVKKRGLN-ISDV--------------ESKRELKFPCFY 130 (567)
Q Consensus 69 ~~~v~~---~~~~~~~~~p~~~~eE~~~~~~~~~~~p~~~~a~~~rgl~-~~~v--------------~~rR~~~~~~~~ 130 (567)
+++|++ ++.++ ++||+++.+||.+++++|+++|.|+++|++|||+ ++.| .+||++|++||+
T Consensus 79 ~~~v~~~~~~~~~~-~~~~~~~~~E~~~~e~~~~~~p~~~~~i~~~gl~~~~~v~~pw~~g~~~~~~~~~~Rl~~~~~~~ 157 (646)
T 1w6g_A 79 NGTVISAVELDTAA-TGELPVLEEEFEVVEQLLATDERWLKALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFV 157 (646)
T ss_dssp TTEEEEEEECCHHH-HCBCCCCHHHHHHHHHHHTTCHHHHHHHHHTTCCGGGEEEEEEECCCCSCGGGTTSCEEEEEEEE
T ss_pred CCeEEecccceeCC-CccCCCCHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCeeEEeecccccCCccCCCcEEEEEEEEE
Confidence 999998 66666 4699999999999999999999999999999995 3322 269999999999
Q ss_pred eeCCCCCcccCCCCCeEEEEecCCceEEEEeCCccccCCCCCCCCCCcCCCCCCCCCCCCCCcc-CCCCCeeEEe-CcEE
Q 040402 131 TDQGTVNMFLRPIEGITIVVDIEEMKVTQYNDREVAPIPKSEPTEYRWSKLKPPFGPRLNSVTT-LPTGPGFKID-GNTV 208 (567)
Q Consensus 131 ~~~~~~n~yahPi~gl~~~vD~~~~~v~~i~d~~~~~~p~~~~~~y~~~~~~~~~r~~~kP~~i-qPeG~sf~v~-g~~V 208 (567)
|..+++|+|+|||+||+++||+.++||++|++.+..+.|. +.++|.++.+.+++|+++||++| ||||+||+|+ |++|
T Consensus 158 r~~~~~n~Ya~Pl~gl~~vvD~~~~~Vi~v~~~~~~~~p~-~~~~y~~~~~~~~~r~~lkP~~i~QPeGpsF~V~~G~~V 236 (646)
T 1w6g_A 158 QDFPEDSAWAHPVDGLVAYVDVVSKEVTRVIDTGVFPVPA-EHGNYTDPELTGPLRTTQKPISITQPEGPSFTVTGGNHI 236 (646)
T ss_dssp CSSTTCCGGGSBCTTEEEEEETTTTEEEEEEECCCCCCCC-SCCCTTCHHHHCSCCCCCCCCCCCCTTCCSCEEETTTEE
T ss_pred ecCCCCCccccccCceEEEEECCCCEEEEEEeCCccCCCC-CCCccchhhcCCCcCCCCCCceecCCCCCceEEeCCCEE
Confidence 9666789999999999999999999999999876555554 45799877654568999999999 9999999999 9999
Q ss_pred eecceEEEEeecCCccceEEccEEecCCCCcccC------------------------------------------CCCC
Q 040402 209 KWANWVFNVGFDARVGTIISTASIYDVDMHKYRR------------------------------------------PLKD 246 (567)
Q Consensus 209 ~w~~W~f~~~f~~reGl~L~~v~~~d~r~~~~R~------------------------------------------~G~D 246 (567)
+||||+||||||+||||+||||+|+| .|..|. +|||
T Consensus 237 ~W~~W~F~vgfn~ReGlvL~dV~y~~--~g~~R~V~YrlSlsEm~VPYgdp~p~~~~k~afD~GeyG~G~~an~L~lGcD 314 (646)
T 1w6g_A 237 EWEKWSLDVGFDVREGVVLHNIAFRD--GDRLRPIINRASIAEMVVPYGDPSPIRSWQNYFDTGEYLVGQYANSLELGCD 314 (646)
T ss_dssp EETTEEEEEEEETTTEEEEEEEEEEE--TTEEEEEEEEEEEEEEEEEBCCCCTTTTTCEEECCCCCCGGGGBCCCCBTTT
T ss_pred EeCCCEEEEecCCCcceEEEEEEEcC--CCCceEEEEEeeeeEEEEeCCCCCchhhcceeeeccCcCCcccccccccCCC
Confidence 99999999999999999999999988 222222 8999
Q ss_pred CCCCcEEeeeEEEcCCCceeEeCcceEEeeecCCCccccccccCCCCceeeeeeceEEEEEEEEEeeccceEEEEEEeeC
Q 040402 247 CPPNAVFIDGYFTSQDGAPIQTPNAICIFERHTGDVMWRHTEAEMPGDVREVRPEVSLVVRMVATVGNYDYVIDWEFKPS 326 (567)
Q Consensus 247 Cpg~a~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~~~~~r~~~~LVvr~i~TVgNYdYi~~~~F~~d 326 (567)
|||+|+|||+++.+++|+|++++|||||||+|.| |||||+|++++.+ .++++++||||+|+|||||||||+|+||||
T Consensus 315 Cpg~i~Y~D~~~~~~~G~p~~~~naICihE~d~G-ilwkH~~~r~~~~--~v~r~r~LVvr~i~Tv~NYdYi~~w~F~~d 391 (646)
T 1w6g_A 315 CLGDITYLSPVISDAFGNPREIRNGICMHEEDWG-ILAKHSDLWSGIN--YTRRNRRMVISFFTTIGNADYGFYWYLYLD 391 (646)
T ss_dssp BCSSCEEECCEEECTTSCEEECTTCEEEEEEEEE-EEEEEECTTTCCE--EEEEEEEEEEEEEEEETTEEEEEEEEEETT
T ss_pred CCCCCEEEeEEEEcCCCCEEEcCCEEEEeeccCC-cceeeecccCCce--eeecccEEEEEEEeeccccceEEEEEEecC
Confidence 9999999999999999999999999999999955 9999999998755 344444999999999999999999999999
Q ss_pred ccEEEEEEEeeeEEeeccccc--cCCCCccccCCcccccccEEEeeeeeecccCCCCeEEEEEE---------------E
Q 040402 327 GSIKLGCKVRPVEYTHIDQIK--EDQQGKLVADNTIGVNHDHFLNYYLDLDIDGYANSFEKTKL---------------T 389 (567)
Q Consensus 327 GtIe~~v~v~atg~~~~~~~~--~~~yG~~V~~~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~---------------~ 389 (567)
|+||++| +||||+++..+. +.+||++|+|+++|++|||+|+|||||||||++|||+++|+ +
T Consensus 392 G~Ie~ev--~aTGil~t~~~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~~~np~~~~~~ 469 (646)
T 1w6g_A 392 GTIEFEA--KATGVVFTSAFPEGGSDNISQLAPGLGAPFHQHIFSARLDMAIDGFTNRVEEEDVVRQTMGPGNERGNAFS 469 (646)
T ss_dssp SCEEEEE--EEEECCCCEECCTTCCSSEEEEETTEEEECEEEEEEEEEEECTTSSCBEEEEEEEEECCSBTTBTTSCCEE
T ss_pred CeEEEEE--EEEEEEeeeecCCccCCCcceecCCcccccceEEEEEeecccccCCCCEEEEEeeEeccCCCCCCCCceeE
Confidence 9999987 999999976553 57899999999999999999999999999999999999998 7
Q ss_pred EEEEeeeChHhHhhccCC-CCcEEEEEcCCCCCCCCCceeEEEecCCCcCCCCCCCCcccccccccceeeEEeecCCCCC
Q 040402 390 VEKETAKTEFEARLKLDT-KPMEFAMVNPNKKTKIGHPVGYRLLPGLVVGPLLTDDDYPQIRAGFTDYNIWVTPYNKSEK 468 (567)
Q Consensus 390 ~~~~~~~tE~~a~~~~~~-~~r~~~i~N~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~~~E~ 468 (567)
+++++++||++|+++++. ++|+|+|+|++++|++|+|+||||+|+++++++++++|+..+||+|++|+||||||+|+|+
T Consensus 470 ~~~t~~~tE~ea~~~~~~~~~r~~~i~N~~~~N~~G~p~gYkl~~~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~ 549 (646)
T 1w6g_A 470 RKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHNQPTLLADPGSSIARRAAFATKDLWVTRYADDER 549 (646)
T ss_dssp EEEEEECBGGGCEECCCGGGTCEEEEEEEEEECTTSCEEEEEEEECCCCCCCSCTTSHHHHHTGGGGSSEEEEECCTTCC
T ss_pred EEEEEccchhhhhhccCCCCCcEEEEeCCCCcCCCCCeeeEEEccCCcccccCCCCccccccccccccceEEeccCCCcc
Confidence 889999999999999999 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCccCCCCCCChhhhccCCCceeeCCeEEEEEeccccCCCCCCCCCccceeeeEEEEeCCCCCCCCcccCCCCCCC
Q 040402 469 YSGGNYVDQSHGDDTLLQWTDGNREIENKDIVLWYTMGIHHAPCQEDFPVMPTVSGGFELRPTNFFEYNPVLKVIPPKHV 548 (567)
Q Consensus 469 ~asg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~H~Pr~ED~Pvmp~~~~~f~L~P~nFFd~nP~ldvp~~~~~ 548 (567)
||||+|+||+.++++|++|+++||+|+|+|||+|||||+||+||+|||||||++++||+|||+|||++||+||+|++.+.
T Consensus 550 ~aag~y~nQs~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~H~Pr~ED~PvMP~~~~~f~L~P~nFF~~nP~ldvp~~~~~ 629 (646)
T 1w6g_A 550 YPTGDFVNQHSGGAGLPSYIAQDRDIDGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDVPANPSQ 629 (646)
T ss_dssp CTTCSCCBTCCSSSSHHHHHTTCCBCTTBCEEEEEEEEEEECCCGGGSSSEEEEEEEEEEEESSCSSSCTTTTCCCC---
T ss_pred ccCCCCcccCCCCCChhHHhhCCCCcccCceEEEEeCccccCCCccccCCCCCceEEEEEEecCcCCCCCCccCCCcccc
Confidence 99999999999989999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred CC-CCCC
Q 040402 549 QW-PNCT 554 (567)
Q Consensus 549 ~~-~~~~ 554 (567)
.. .||+
T Consensus 630 ~~~~~~~ 636 (646)
T 1w6g_A 630 SGSHCHG 636 (646)
T ss_dssp -------
T ss_pred ccccccc
Confidence 32 4444
No 5
>1spu_A Copper amine oxidase; oxidoreductase, TPQ, periplasmic, signal; HET: PAQ; 2.00A {Escherichia coli} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 d.82.1.1 PDB: 1d6y_A* 1d6u_A* 1d6z_A* 2wgq_A 1oac_A* 1dyu_A* 2w0q_A* 2wo0_A* 2wof_A* 2woh_A* 1lvn_A* 1jrq_A* 1qak_A* 1qaf_A* 1qal_A*
Probab=100.00 E-value=2.9e-150 Score=1269.26 Aligned_cols=530 Identities=32% Similarity=0.577 Sum_probs=477.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCC-CCCeeEEEEEccCCChHHhhhhhc-CCCCCCCceEEE------------EECC
Q 040402 3 SCHRPLDSLSPAEFTLVQTIVKTSYP-SNNLSFHYVGLDEPDKAVVYSWLS-NSKIKIPRRAIV------------IDLS 68 (567)
Q Consensus 3 s~~HPldpLs~~Ei~~a~~~l~~~~~-~~~~~f~~I~L~EP~K~~vl~~l~-~~~~~p~R~A~v------------V~L~ 68 (567)
.++|||||||++||++|+++|+++.. .+.++|.+|+|+||+|++||+|+. |++++|+|+|+| |||+
T Consensus 91 ~~~HPLdpLs~~Ei~~a~~il~~~~~~~~~~~F~~i~L~eP~K~~vl~~~~~~~~~~p~R~A~vv~~~~~~~~e~vV~l~ 170 (727)
T 1spu_A 91 KRPHPLNALTADEIKQAVEIVKASADFKPNTRFTEISLLPPDKEAVWAFALENKPVDQPRKADVIMLDGKHIIEAVVDLQ 170 (727)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHTSTTCCTTCEEEEEEEECCCHHHHHHHHHHCCCCCCCCEEEEEEEETTEEEEEEEETT
T ss_pred ccCCCCCcCCHHHHHHHHHHHHhcccCCCCcEEEEEEecCCCHHHHHhHHhcCCCCCCCeEEEEEEEeCCeEEEEEEeCC
Confidence 56799999999999999999998753 578899999999999999999964 444568999999 7899
Q ss_pred CCcEEEEEEecCCCCCCCCHHHHHHHHhhhccCHHHHHHHHHcCCC-cccc-----------------cCceEEEEEEEe
Q 040402 69 RRSIVSDKVYTGHGFPLLTLEEQRTGAAPVLAYEPFKASVKKRGLN-ISDV-----------------ESKRELKFPCFY 130 (567)
Q Consensus 69 ~~~v~~~~~~~~~~~p~~~~eE~~~~~~~~~~~p~~~~a~~~rgl~-~~~v-----------------~~rR~~~~~~~~ 130 (567)
+++|++++.++ ++||+++.+||.+++++|+++|.|+++|++|||+ +..| ++||++|++||+
T Consensus 171 ~~~v~~~~~~~-~~~~~~~~~e~~~~e~~~~~~p~~~~~~~~~gl~~~~~v~~dpw~~g~~~~~~~~~~~~R~~~~~~~~ 249 (727)
T 1spu_A 171 NNKLLSWQPIK-DAHGMVLLDDFASVQNIINNSEEFAAAVKKRGITDAKKVITTPLTVGYFDGKDGLKQDARLLKVISYL 249 (727)
T ss_dssp TTEEEEEEEET-TCCCCCCHHHHHHHHHHHHHCHHHHHHHHHTTCSCTTSEEEEEECCCCCTTTTCCCSSSCEEEEEEEE
T ss_pred CCceEEEEeCC-CcCCCCCHHHHHHHHHHHHhCHHHHHHHHHhCCCccceEEEccccccccCCCCCCCCCcEEEEEEEEE
Confidence 99999998887 4699999999999999999999999999999994 4443 259999999998
Q ss_pred eeCCCCCcccCCCCCeEEEEecCCceEEEEeCCccccCCCCCCCCCCcCCCCCCCCCCCCCCcc-CCCCCeeEEeCcEEe
Q 040402 131 TDQGTVNMFLRPIEGITIVVDIEEMKVTQYNDREVAPIPKSEPTEYRWSKLKPPFGPRLNSVTT-LPTGPGFKIDGNTVK 209 (567)
Q Consensus 131 ~~~~~~n~yahPi~gl~~~vD~~~~~v~~i~d~~~~~~p~~~~~~y~~~~~~~~~r~~~kP~~i-qPeG~sf~v~g~~V~ 209 (567)
. .+++|+|+|||+||.++||+.++||++|++.+.+++|.. ..+|+++. ++|+++||++| ||||+||+|+|++|+
T Consensus 250 ~-~~~~n~Ya~Pl~g~~~vvD~~~~~V~~i~~~~~~~~p~~-~~~y~~~~---~~r~~lkP~~i~QPeG~sF~v~g~~V~ 324 (727)
T 1spu_A 250 D-VGDGNYWAHPIENLVAVVDLEQKKIVKIEEGPVVPVPMT-ARPFDGRD---RVAPAVKPMQIIEPEGKNYTITGDMIH 324 (727)
T ss_dssp C-CSSSCGGGSBCTTEEEEEETTTTEEEEEEECCCCCCCCS-CCCSSSTT---EECCCCCCCEEECTTCCSEEEETTEEE
T ss_pred E-CCCCCccccCccceEEEEecccCEEEEEEcCCccccCCC-CCCccccc---cccCCCCCccccCCCCCCEEECCCccc
Confidence 6 567899999999999999999999999998776666654 35798653 46999999999 999999999999999
Q ss_pred ecceEEEEeecCCccceEEccEEec----------------------CCCCcccC------------------CCCCCCC
Q 040402 210 WANWVFNVGFDARVGTIISTASIYD----------------------VDMHKYRR------------------PLKDCPP 249 (567)
Q Consensus 210 w~~W~f~~~f~~reGl~L~~v~~~d----------------------~r~~~~R~------------------~G~DCpg 249 (567)
||||+||||||+||||+||||+|+| ++....|+ +||||||
T Consensus 325 W~~W~F~vgf~~reGlvL~dV~y~~~g~~r~V~YrlSl~Em~VPYgdp~~~~~~k~~fD~GeyG~G~~a~~L~lGcDCpg 404 (727)
T 1spu_A 325 WRNWDFHLSMNSRVGPMISTVTYNDNGTKRKVMYEGSLGGMIVPYGDPDIGWYFKAYLDSGDYGMGTLTSPIARGKDAPS 404 (727)
T ss_dssp ETTEEEEEEEETTTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEBCCCSTTTTTCEECHHHHHCTTTTBCCCCTTTTSCT
T ss_pred cCCcEEEEecCCCCceEEEEEEEcCCCceEEEEEEeEeeEEEEeCCCCCCchhcceeeeccCcCCcccccccccCCCCCC
Confidence 9999999999999999999999987 11112222 9999999
Q ss_pred CcEEeeeEEEcCCCceeEeCcceEEeeecCCCccccccccCCCCceeeeeeceEEEEEEEEEeeccceEEEEEEeeCccE
Q 040402 250 NAVFIDGYFTSQDGAPIQTPNAICIFERHTGDVMWRHTEAEMPGDVREVRPEVSLVVRMVATVGNYDYVIDWEFKPSGSI 329 (567)
Q Consensus 250 ~a~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~~~~~r~~~~LVvr~i~TVgNYdYi~~~~F~~dGtI 329 (567)
+|+|||+++.+++|+|++++|||||||+|+ ||||||++++....+++ +++||||+|+|||||||||+|+|||||+|
T Consensus 405 ~i~Y~D~~~~~~~G~p~~~~naiCi~E~d~-G~l~kH~~~~~~~~~~r---~r~LVv~~i~Tv~NYdYi~~w~F~~dG~I 480 (727)
T 1spu_A 405 NAVLLNETIADYTGVPMEIPRAIAVFERYA-GPEYKHQEMGQPNVSTE---RRELVVRWISTVGNYDYIFDWIFHENGTI 480 (727)
T ss_dssp TCEEEEEEEECTTSCEEEEEEEEEEEEEEE-EEEEEECCTTSCCEEEE---EEEEEEEEEEEETTEEEEEEEEEETTSCE
T ss_pred CCEEeeeEEEcCCCCEEEeCCeEEEecccC-CcceeeeccCCCceeee---ceEEEEEEEEeecccceEEEEEEecCceE
Confidence 999999999999999999999999999995 59999999985322444 44999999999999999999999999999
Q ss_pred EEEEEEeeeEEeeccc-----c------ccCCCCccccCCcccccccEEEeeeeeecccCCCCeEEEEEE----------
Q 040402 330 KLGCKVRPVEYTHIDQ-----I------KEDQQGKLVADNTIGVNHDHFLNYYLDLDIDGYANSFEKTKL---------- 388 (567)
Q Consensus 330 e~~v~v~atg~~~~~~-----~------~~~~yG~~V~~~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~---------- 388 (567)
|++| +||||+++.+ . ++.+||++|+|+++|++|||+|||||||||||++|||++.|+
T Consensus 481 ~~ev--~aTGil~~~~~~~t~~~~~~~~~~~~yGt~v~~~~~a~~HqH~f~~RlD~dVdG~~Nsv~~~d~~~~~~~~~np 558 (727)
T 1spu_A 481 GIDA--GATGIEAVKGVKAKTMHDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMDPVVKPNTAGGP 558 (727)
T ss_dssp EEEE--EEEECCCEEECSCSSTTSTTHHHHTTTEEEEETTEEEECEEEEEEEEEEECTTSSEEEEEEEEEEEEECCSCSS
T ss_pred EEEE--EEEEEEEeccccccccccccccccCCCcceecCCcccccceeEEEEeecccccCCCCeEEEEeeEEccCCCCCC
Confidence 9987 9999997532 1 126899999999999999999999999999999999999987
Q ss_pred -----EEEEEeeeChHhHhhccCC-CCcEEEEEcCCCCCCCCCceeEEEec--CCC----cCCCCCCCCcccccccccce
Q 040402 389 -----TVEKETAKTEFEARLKLDT-KPMEFAMVNPNKKTKIGHPVGYRLLP--GLV----VGPLLTDDDYPQIRAGFTDY 456 (567)
Q Consensus 389 -----~~~~~~~~tE~~a~~~~~~-~~r~~~i~N~~~~N~~G~p~gYkl~p--~~~----~~~l~~~~s~~~~ra~fa~~ 456 (567)
++++++++||++|+++++. .+|+ |+|++++|++|+|+||||+| +++ ++++++++|+.++||+||+|
T Consensus 559 ~~~~~~~~~t~~~tE~~a~~~~~~~~~r~--i~n~~~~N~~G~p~gYkl~~~~~~~~~~~~~~l~~~~s~~~~ra~fa~~ 636 (727)
T 1spu_A 559 RTSTMQVNQYNIGNEQDAAQKFDPGTIRL--LSNPNKENRMGNPVSYQIIPYAGGTHPVAKGAQFAPDEWIYHRLSFMDK 636 (727)
T ss_dssp CSEEEEEEEEEECBHHHHSBCCCTTSEEE--EEEEEEECTTSCEEEEEEEEEEEESSCBCCSCSSCTTCHHHHHCGGGGC
T ss_pred CCceeEEEEEEccchhhhhhccCCCCcEE--EeCCCCcCCCCCeeeEEEecCCCCccccccccccCCcchhhhhhccccc
Confidence 6789999999999999999 7777 89999999999999999999 333 57889999999999999999
Q ss_pred eeEEeecCCCCCCCCCcCccCCCCCCChhhhccCCCceeeCCeEEEEEeccccCCCCCCCCCccceeeeEEEEeCCCCCC
Q 040402 457 NIWVTPYNKSEKYSGGNYVDQSHGDDTLLQWTDGNREIENKDIVLWYTMGIHHAPCQEDFPVMPTVSGGFELRPTNFFEY 536 (567)
Q Consensus 457 ~lwVT~y~~~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~H~Pr~ED~Pvmp~~~~~f~L~P~nFFd~ 536 (567)
+||||||+|+|+||||+|++|+++++||++|+++||+|+|+|||+|||||+||+||+|||||||++++||+|||+|||++
T Consensus 637 ~lwVT~y~d~E~~a~g~y~~q~~~~~gl~~~~~~~e~i~~~DiV~W~t~G~~H~Pr~ED~Pvmp~~~~~f~L~P~nFFd~ 716 (727)
T 1spu_A 637 QLWVTRYHPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNTDAVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDE 716 (727)
T ss_dssp SEEEEECCTTCCCTTCSCCTTCSSCCSHHHHHTTCCBCSSEEEEEEEEEEEEECCCGGGSSSEEEEEEEEEEEEESSSSS
T ss_pred ceEEeccCCcccCCCCCCccCCCCCCCHHHHhhCCCccccCCcEEEEecccccCCChhhCCCCcccEEEEEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCC
Q 040402 537 NPVLKVIPPK 546 (567)
Q Consensus 537 nP~ldvp~~~ 546 (567)
||+||+|++.
T Consensus 717 nPaldvp~~~ 726 (727)
T 1spu_A 717 TPTLGALKKD 726 (727)
T ss_dssp CTTSCCBC--
T ss_pred CCCcCCCCCC
Confidence 9999999874
No 6
>1tu5_A Copper amine oxidase, liver isozyme; oxidoreductase, quinoenzyme, TPQ; HET: TPQ NAG NDG; 2.37A {Bos taurus} PDB: 2pnc_A* 3ala_A* 2y73_A* 1pu4_A* 1us1_A* 2y74_A* 2c10_A* 2c11_A*
Probab=100.00 E-value=1.4e-140 Score=1184.95 Aligned_cols=529 Identities=24% Similarity=0.340 Sum_probs=436.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcC---CC-------CCeeEEEEEccCCChHHhhhhhcCCCCCCCceEEE---------
Q 040402 4 CHRPLDSLSPAEFTLVQTIVKTSY---PS-------NNLSFHYVGLDEPDKAVVYSWLSNSKIKIPRRAIV--------- 64 (567)
Q Consensus 4 ~~HPldpLs~~Ei~~a~~~l~~~~---~~-------~~~~f~~I~L~EP~K~~vl~~l~~~~~~p~R~A~v--------- 64 (567)
.+|||||||++||++|+++|+++. +. .++.|.+|+|.||+|++||+||++++++|+|+|+|
T Consensus 39 ~~~~~~~Ls~~E~~~V~~~L~~~~~l~L~~~~~a~~~dn~i~~IeL~~P~K~~vL~~Ld~~~~~P~R~A~vv~~~~~~~~ 118 (746)
T 1tu5_A 39 QSQLFADLSREELTTVMSFLTQQLGPDLVDAAQARPSDNCVFSVELQLPPKAAALAHLDRGSPPPAREALAIVFFGGQPQ 118 (746)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHCSSCBCTTTCCTTSEEEEEEEEECCCHHHHHHHHHHCCCCCCCEEEEEEEECSSSS
T ss_pred CCCcCCCCCHHHHHHHHHHHhccCccCccccccCCccccEEEEEECCCCCHHHhhhhhcCCCCCCCccEEEEEEeCCCCC
Confidence 469999999999999999998874 21 35889999999999999999999877789999999
Q ss_pred -------EE-CCCCcEEEEEEe--c--CCCCC----CCCHHHHHHHHhhhccCHHHHHHHHHcCC-Cccc--c-------
Q 040402 65 -------ID-LSRRSIVSDKVY--T--GHGFP----LLTLEEQRTGAAPVLAYEPFKASVKKRGL-NISD--V------- 118 (567)
Q Consensus 65 -------V~-L~~~~v~~~~~~--~--~~~~p----~~~~eE~~~~~~~~~~~p~~~~a~~~rgl-~~~~--v------- 118 (567)
|+ |+++++.+ .+ + ++.+| +++.+||.+++++|+++|+++++|.++|+ ++.+ +
T Consensus 119 ~~v~E~vV~PL~~~~~~~--~~~~~~~~~~~p~~~r~i~~~E~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~ 196 (746)
T 1tu5_A 119 PNVTELVVGPLPQPSYMR--DVTVERHGGPLPYYRRPVLLREYLDIDQMIFNRELPQAAGVLHHCCSYKQGGQKLLTMNS 196 (746)
T ss_dssp CEEEEEEEESSSSCCEEE--ECHHHHHSSCEEGGGSCCCHHHHHHHHHHHHHTTGGGGHHHHHHHHCTTTTCCCEEEECC
T ss_pred CceEEEEecCCCCCcEEE--EcccCCCCCcCCcccCCCCHHHHHHHHHHHHHCHHHHHHHHHhcCCCcccCCEEEeCccc
Confidence 66 77777643 33 2 34477 89999999999999999999999988554 1111 1
Q ss_pred ------cCceEEEEEEEeeeCCCCCcccCCCCCeEEEEecC-----CceEEEEeCCcc--------------c---cCCC
Q 040402 119 ------ESKRELKFPCFYTDQGTVNMFLRPIEGITIVVDIE-----EMKVTQYNDREV--------------A---PIPK 170 (567)
Q Consensus 119 ------~~rR~~~~~~~~~~~~~~n~yahPi~gl~~~vD~~-----~~~v~~i~d~~~--------------~---~~p~ 170 (567)
+++|+.|++||....+ +|+|+||| ||+++||++ ++||++|++.+. . +++.
T Consensus 197 ~p~~~~~g~R~~~~~~~r~~~~-~n~Y~~Pl-g~~~~vD~~~~D~~~~~V~~i~y~g~~~~s~~el~~~~~~g~~~~~~~ 274 (746)
T 1tu5_A 197 APRGVQSGDRSTWFGIYYNITK-GGPYLHPV-GLELLVDHKALDPADWTVQKVFFQGRYYENLAQLEEQFEAGQVNVVVI 274 (746)
T ss_dssp SSCSSSTTCCEEEEEEEECCSS-SCGGGSEE-EEEEEEECCSSSGGGCEEEEEEETTEEESSHHHHHHHHHTTCCCCCCC
T ss_pred cCCcCCCCcEEEEEEEEEecCC-CCccccce-eeEEEEeCCCCCcccCEEEEEEECCCccCchhhhhcccccCCcccccC
Confidence 3599999999754333 79999999 799999997 699999985431 0 1121
Q ss_pred CCCCCCCcCC--CCCC-CCCCCCCCcc-CCCCCeeEEeCcEEeecceEEEEeecCCccceEEccEEecCCCCcccC----
Q 040402 171 SEPTEYRWSK--LKPP-FGPRLNSVTT-LPTGPGFKIDGNTVKWANWVFNVGFDARVGTIISTASIYDVDMHKYRR---- 242 (567)
Q Consensus 171 ~~~~~y~~~~--~~~~-~r~~~kP~~i-qPeG~sf~v~g~~V~w~~W~f~~~f~~reGl~L~~v~~~d~r~~~~R~---- 242 (567)
. .+|.+.. .... .|.++ |++| ||||+||+|+|++|+||||+||||||+||||+||||+|++ |.-.+|.
T Consensus 275 p--~~~~~~~~~~~~~~~r~~~-p~~i~QPeG~sF~v~g~~V~W~~W~f~vgf~~reGlvL~dv~y~g-r~V~YrlSl~E 350 (746)
T 1tu5_A 275 P--DDGTGGFWSLKSQVPPGPT-PPLQFHPQGPRFSVQGNRVASSLWTFSFGLGAFSGPRVFDVRFQG-ERLAYEISLQE 350 (746)
T ss_dssp C--C-----------------------------CEEEETTEEEESSEEEEEEEETTTEEEEEEEEETT-EEEEEEEEEEE
T ss_pred c--cccCcccccccccccCCCC-CcceeCCCCCCEEecCCcccCCCcEEEEecCCCCceEEEeeEECC-eeEEEEEEeee
Confidence 1 1355433 2221 25555 9999 9999999999999999999999999999999999999965 1111111
Q ss_pred --------------------------------CCCCCCCCcEEeeeEEEcCCCceeEeCcceEEeeecCCCccccccccC
Q 040402 243 --------------------------------PLKDCPPNAVFIDGYFTSQDGAPIQTPNAICIFERHTGDVMWRHTEAE 290 (567)
Q Consensus 243 --------------------------------~G~DCpg~a~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~ 290 (567)
+||||||+|+|||+++.+++|+|++++|||||||+|.|.|||||++.+
T Consensus 351 m~VPYgdp~p~~~~~~~~D~~yG~G~~a~~L~~GcDCpg~i~Y~D~~~~~~~G~p~~~~naiCihE~d~G~~lwkH~~~~ 430 (746)
T 1tu5_A 351 AGAVYGGNTPAAMLTRYMDSGFGMGYFATPLIRGVDCPYLATYMDWHFVVESQTPKTLHDAFCVFEQNKGLPLRRHHSDF 430 (746)
T ss_dssp EEEEECCSSHHHHHCEEEGGGTCTTTTBCCCCBTTTBCTTSEEEEEEEEESSSSCEEEEEEEEEEEEEEEEEEEECCCST
T ss_pred EEeecCCCCchhhcceeeccccCcccccccCccCCCCCCCCEEEeeEEecCCCCEEEcCCeEEEEEeeCCeeeeeecccc
Confidence 899999999999999999999999999999999999666799999944
Q ss_pred CCCceeeeeeceEEEEEEEEEeeccceEEEEEEeeCccEEEEEEEeeeEEeeccccc--cCCCCccccCCcccccccEEE
Q 040402 291 MPGDVREVRPEVSLVVRMVATVGNYDYVIDWEFKPSGSIKLGCKVRPVEYTHIDQIK--EDQQGKLVADNTIGVNHDHFL 368 (567)
Q Consensus 291 ~~~~~~~~r~~~~LVvr~i~TVgNYdYi~~~~F~~dGtIe~~v~v~atg~~~~~~~~--~~~yG~~V~~~~~a~~HqH~f 368 (567)
+.+. +.++++++||||+|+|||||||||+|+|||||+||++| +||||+++..+. +.+|||+|+++++|++|||+|
T Consensus 431 ~~~~-~~v~r~r~LVvr~i~TVgNYdYi~~w~F~qdG~Ie~ev--~aTGil~t~~~~~~~~~yGt~V~~~v~a~~HqH~f 507 (746)
T 1tu5_A 431 LSHY-FGGVAQTVLVFRSVSTMLNADYVWDMVFYPNGAIEVKL--HATGYISSAFLFGAARRYGNQVGEHTLGPVHTHSA 507 (746)
T ss_dssp TCCC-CCEEEEEEEEEEEEEEETTEEEEEEEEECTTSCEEEEE--EEEECCCCEECCTTGGGGEEEEETTEEEECEEEEE
T ss_pred cCCc-eeeecccEEEEEEEEeecccceEEEEEEecCCcEEEEE--EecceEeeeecCCCCCCCcceecCCccccccceEE
Confidence 3332 23445559999999999999999999999999999987 999999976553 478999999999999999999
Q ss_pred eeeeeecccCCCCeEEEEEE------------------EEEEEeeeChHhHhhccCC-CCcEEEEEcCCCCCCCCCceeE
Q 040402 369 NYYLDLDIDGYANSFEKTKL------------------TVEKETAKTEFEARLKLDT-KPMEFAMVNPNKKTKIGHPVGY 429 (567)
Q Consensus 369 ~~RlD~dIdG~~Nsv~~~d~------------------~~~~~~~~tE~~a~~~~~~-~~r~~~i~N~~~~N~~G~p~gY 429 (567)
+|||||||||++|||+++|+ ++++++++||++|+++++. ++|+| |+|++++|++|+|+||
T Consensus 508 ~~RlD~dIdG~~Nsv~~~d~~~~~~~np~~~~~~~~~~~~~~t~~~tE~~a~~~~~~~~~r~~-ivn~~~~N~~G~p~gY 586 (746)
T 1tu5_A 508 HYKVDLDVGGLENWVWAEDMAFVPTAIPWSPEHQIQRLQVTRKQLETEEQAAFPLGGASPRYL-YLASKQSNKWGHPRGY 586 (746)
T ss_dssp EEEEEECTTSSEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEECCBGGGGEEETTSCCCSEE-EEEEEEECTTSCEEEE
T ss_pred EEEecccccCCCCEEEEEeeEEcccCCCCCcccccceeEEEEEEeeehhhhccccCCCCceEE-EeCCCCcCCCCCcceE
Confidence 99999999999999999886 4578899999999999999 89999 9999999999999999
Q ss_pred EEecCCCcCCCCCCCCcccccccccceeeEEeecCCCCCCCCCcCccCCCCCC--ChhhhccCCCceeeCCeEEEEEecc
Q 040402 430 RLLPGLVVGPLLTDDDYPQIRAGFTDYNIWVTPYNKSEKYSGGNYVDQSHGDD--TLLQWTDGNREIENKDIVLWYTMGI 507 (567)
Q Consensus 430 kl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~~~E~~asg~y~~q~~~~~--~l~~~~~~~e~i~~~DiV~W~t~G~ 507 (567)
||+|+++++++++++|...+||+||+|+||||||+|+|+||||.|++|+.+++ +|++|+ +||+|+|+|||+|||||+
T Consensus 587 kl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~aag~ynq~~~~~~~~~~~~~~-~~e~I~n~DiV~W~t~G~ 665 (746)
T 1tu5_A 587 RIQTVSFAGGPMPQNSPMERAFSWGRYQLAITQRKETEPSSSSVFNQNDPWTPTVDFSDFI-NNETIAGKDLVAWVTAGF 665 (746)
T ss_dssp EEEEECBCCCCCCTTSTTGGGGGGGGEEEEEEECCTTCCCSSCTTTTTCTTSCSCCGGGGC-SCCBCSSEEEEEEEEEEE
T ss_pred EECcCCcccccCCCcchhhccccccccceEEeccCCCcccCCccccccCCCCCCccHhhhc-CCCCccCCceEEEEeccc
Confidence 99999999999999999999999999999999999999999999976666554 478999 999999999999999999
Q ss_pred ccCCCCCCCCCc--cceeeeEEEEeCCCCCCCCcccCCCC
Q 040402 508 HHAPCQEDFPVM--PTVSGGFELRPTNFFEYNPVLKVIPP 545 (567)
Q Consensus 508 ~H~Pr~ED~Pvm--p~~~~~f~L~P~nFFd~nP~ldvp~~ 545 (567)
||+||+|||||| |++++||+|||+|||++||+||+|++
T Consensus 666 ~HiPr~ED~PvM~tp~~~~gf~LrP~nFF~~nP~ld~p~~ 705 (746)
T 1tu5_A 666 LHIPHAEDIPNTVTVGNGVGFFLRPYNFFDQEPSMDSADS 705 (746)
T ss_dssp EECCCGGGSSCBCCCSCCEEEEEEEESSSSSSCCCC----
T ss_pred ccCCChhccCccCCCccEEEEEEEeCCCCCCCCcccCCCc
Confidence 999999999999 77999999999999999999999998
No 7
>1w7c_A Lysyl oxidase; AMNE oxidase, copper, oxidoreductase, quinoprotein, topaquinone enzyme, TPQ; HET: BMA NAG TPQ IMD; 1.23A {Pichia pastoris} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1rky_A* 1n9e_A*
Probab=100.00 E-value=2.6e-139 Score=1173.36 Aligned_cols=527 Identities=19% Similarity=0.284 Sum_probs=453.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcC-CC-------CCeeEEEEEccCCChHHhhhhhcCCCCCCCceEEE-----------
Q 040402 4 CHRPLDSLSPAEFTLVQTIVKTSY-PS-------NNLSFHYVGLDEPDKAVVYSWLSNSKIKIPRRAIV----------- 64 (567)
Q Consensus 4 ~~HPldpLs~~Ei~~a~~~l~~~~-~~-------~~~~f~~I~L~EP~K~~vl~~l~~~~~~p~R~A~v----------- 64 (567)
.+|||||||++||++|+++|+++. +. .++.|++|+|.||+|++||+||++++++|+|+|+|
T Consensus 17 ~~~p~~~Ls~~E~~aV~~~L~~~l~l~~~~~~~~~dN~i~~VeL~~P~K~~vL~~Ld~~g~~P~R~A~vv~~~~~~~~~~ 96 (747)
T 1w7c_A 17 KTNIWTSLAKEEVQEVLDLLHSTYNITEVTKADFFSNYVLWIETLKPNKTEALTYLDEDGDLPPRNARTVVYFGEGEEGY 96 (747)
T ss_dssp SCCTTCCCCHHHHHHHHHHHHHHSCCCCGGGCCTTSEEEEEEEEECCCHHHHHHHHHSCCCCCCCEEEEEEEECSSSSCE
T ss_pred CCCCCCCCCHHHHHHHHHHHHhccCCCccccCccccceEEEEECcCCCHHHHHhHhhCCCCCCCceEEEEEEeCCCCCCc
Confidence 369999999999999999999883 22 45689999999999999999999887789999999
Q ss_pred -----EE-CCCCcEEEEEEec---CC---CCC----CCCHHHHHHHHhhhccCHHHHHHH------HHcC-CCcccc---
Q 040402 65 -----ID-LSRRSIVSDKVYT---GH---GFP----LLTLEEQRTGAAPVLAYEPFKASV------KKRG-LNISDV--- 118 (567)
Q Consensus 65 -----V~-L~~~~v~~~~~~~---~~---~~p----~~~~eE~~~~~~~~~~~p~~~~a~------~~rg-l~~~~v--- 118 (567)
|+ |+.+++++++.++ +. .+| +++.+||.+++++|+ .++++| +++| |+...+
T Consensus 97 ~~E~vV~PL~~~~v~~~~~~~~~~~~g~~~~p~~~r~~~~~E~~~~e~~~~---~~~~~~~~~~l~~~~g~~~~~~l~~w 173 (747)
T 1w7c_A 97 FEELKVGPLPVSDETTIEPLSFYNTNGKSKLPFEVGHLDRIKSAAKSSFLN---KNLNTTIMRDVLEGLIGVPYEDMGCH 173 (747)
T ss_dssp EEEEEEESSSCCTTCEEEECCTTCTTCCSEEEGGGCCCCHHHHHHHHHHHH---HHHTSHHHHHHHHHHHSSCGGGEEEE
T ss_pred eEEEEEcCCCCCcEEEEEeccccCCCCcccCCcccCCCCHHHHHHHHHHHH---HHHHHHhhccchhhcCCcccceeeee
Confidence 67 8888887777663 33 357 899999999999998 666666 6688 432211
Q ss_pred ----------cCceEEEEEEEeeeCCCCCcccCCCCCeEEEEecC-----CceEEEEeCCc-----------------cc
Q 040402 119 ----------ESKRELKFPCFYTDQGTVNMFLRPIEGITIVVDIE-----EMKVTQYNDRE-----------------VA 166 (567)
Q Consensus 119 ----------~~rR~~~~~~~~~~~~~~n~yahPi~gl~~~vD~~-----~~~v~~i~d~~-----------------~~ 166 (567)
+++|+.|++||....+ +|+|+||| ||+++||++ ++||++|++.+ ..
T Consensus 174 ~~~~~~~~~~~g~R~~~~~~~r~~~~-~n~Y~~Pl-g~~~~vD~~~~D~~~~~V~~v~~~g~~~~s~~el~~~~~~~g~v 251 (747)
T 1w7c_A 174 SAAPQLHDPATGATVDYGTCNINTEN-DAENLVPT-GFFFKFDMTGRDVSQWKMLEYIYNNKVYTSAEELYEAMQKDDFV 251 (747)
T ss_dssp ECSSCEECTTTCCEEEEEEEEECCSS-SCGGGCEE-EEEEEEECCSSCGGGCEEEEEEETTEEESSHHHHHHHHHSTTCC
T ss_pred cccCCcCCCCCCceEEEEEEEEecCC-CCccccce-eeEEEEeCCCCCcccCEEEEEEECCcccCchhhhhhhhcccCcc
Confidence 2599999999754334 79999999 799999997 58999986543 11
Q ss_pred -cCCCCCCCCCC---cCCCC-C--CCCCCCCCCcc-CCCCCeeEEeCcE--EeecceEEEEeecCCccceEEccEEecCC
Q 040402 167 -PIPKSEPTEYR---WSKLK-P--PFGPRLNSVTT-LPTGPGFKIDGNT--VKWANWVFNVGFDARVGTIISTASIYDVD 236 (567)
Q Consensus 167 -~~p~~~~~~y~---~~~~~-~--~~r~~~kP~~i-qPeG~sf~v~g~~--V~w~~W~f~~~f~~reGl~L~~v~~~d~r 236 (567)
+++.. ..+|. ++... + ++|+++||++| ||||+||+|+|+. |+||||+||||||+||||+||||+|++.|
T Consensus 252 ~~~~~p-~~~~~~~~~~~~~~g~~~~r~~lkp~~i~QPeG~sF~v~g~~~yV~W~~W~f~vgf~~reGlvL~dv~y~gr~ 330 (747)
T 1w7c_A 252 TLPKID-VDNLDWTVIQRNDSAPVRHLDDRKSPRLVEPEGRRWAYDGDEEYFSWMDWGFYTSWSRDTGISFYDITFKGER 330 (747)
T ss_dssp CCCCCC-TTCCGGGCCSCCTTSCCCTTTTSCCCCCCCTTCCCCEEETTTTEEEETTEEEEEEEETTTEEEEEEEEETTEE
T ss_pred cccccC-CCCCcccchhhcccCCCCcccCCCCCcccCCCCCCEEEeCCccceeccCCeEEEecCCCCceEEEeeeECCEE
Confidence 11211 23432 22322 2 46899999999 9999999999999 99999999999999999999999996411
Q ss_pred ------------------C--------------CcccC--CCCCCCCCcEEeeeEEEcCCCceeEeCcceEEeeecCCCc
Q 040402 237 ------------------M--------------HKYRR--PLKDCPPNAVFIDGYFTSQDGAPIQTPNAICIFERHTGDV 282 (567)
Q Consensus 237 ------------------~--------------~~~R~--~G~DCpg~a~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~ 282 (567)
. |.... +||||||+|+|||+++. ++|+|++++|||||||+|.|.|
T Consensus 331 V~YrlSl~Em~VPYgdp~p~~~~~~~~D~gyG~G~a~~L~~GcDCpg~i~Y~D~~~~-~~G~p~~~~naiCihE~d~G~p 409 (747)
T 1w7c_A 331 IVYELSLQELIAEYGSDDPFNQHTFYSDISYGVGNRFSLVPGYDCPSTAGYFTTDTF-EYDEFYNRTLSYCVFENQEDYS 409 (747)
T ss_dssp EEEEEEEEEEEEEECCSSTTGGGCEEEHHHHCSSSSCCCCBTTTBCTTCEEEEEEEE-ETTEEEEEEEEEEEEEEECSSC
T ss_pred EEEEEEeeeEEeccCCCCchhheeeeeccccCcccccccccCCCCCCCCEEeeeEEe-cCCCeEEcCceEEEEEEeCCee
Confidence 0 11011 89999999999999999 9999999999999999997767
Q ss_pred cccccccCCCCceeeeeeceEEEEEEEEEeeccceEEEEEEeeCccEEEEEEEeeeEEeeccccc---cCCCCccccCCc
Q 040402 283 MWRHTEAEMPGDVREVRPEVSLVVRMVATVGNYDYVIDWEFKPSGSIKLGCKVRPVEYTHIDQIK---EDQQGKLVADNT 359 (567)
Q Consensus 283 l~kH~~~~~~~~~~~~r~~~~LVvr~i~TVgNYdYi~~~~F~~dGtIe~~v~v~atg~~~~~~~~---~~~yG~~V~~~~ 359 (567)
||||+++ +. +.++++++||||+|+|||||||||+|+|||||+||++| +||||+++..+. +.+||++|++++
T Consensus 410 l~kH~~~--~~--~~v~r~r~LVvr~i~TVgNYdYif~w~F~qdG~Ie~ev--~aTGil~t~~~~~~~~~~yGt~V~~~v 483 (747)
T 1w7c_A 410 LLRHTGA--SY--SAITQNPTLNVRFISTIGNADYNFLYKFFLDGTLEVSV--RAAGYIQAGYWNPETSAPYGLKIHDVL 483 (747)
T ss_dssp SEEEEET--TE--EEEECCEEEEEEEEECCCC-CEEEEEEECTTSCEEEEE--EECBCCCCEECCTTTCGGGCCEEETTE
T ss_pred eEEeccC--Cc--ceeeeCceEEEEEEEeccccceEEEEEEecCCeEEEEE--EeeEEEeccccCCCCcCCCcceecCCc
Confidence 9999998 33 34555569999999999999999999999999999987 999999976553 368999999999
Q ss_pred ccccccEEEeeeeeecccCCCCeEEEEEE------------------EEEEEeeeChHhHhhccC-C-CCcEEEEEcCCC
Q 040402 360 IGVNHDHFLNYYLDLDIDGYANSFEKTKL------------------TVEKETAKTEFEARLKLD-T-KPMEFAMVNPNK 419 (567)
Q Consensus 360 ~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~------------------~~~~~~~~tE~~a~~~~~-~-~~r~~~i~N~~~ 419 (567)
+|++|||+|||||||||||++|||+++|+ ++++++++||++|+++++ . .+|+| |+|+++
T Consensus 484 ~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~np~~~~~~~~~~~~~~t~~~tE~~a~~~~~~~~~~r~~-ivN~~~ 562 (747)
T 1w7c_A 484 SGSFHDHVLNYKVDLDVGGTKNRASQYVMKDVDVEYPWAPGTVYNTKQIAREVFENEDFNGINWPENGQGILL-IESAEE 562 (747)
T ss_dssp ECCCEEEEEEEEEEECTTSSEEEEEEEEEEEEEEECTTSTTCEEEEEEEEEEECCBCCTTCBCCCGGGCEEEE-EEEEEE
T ss_pred ccCccceEEEEEeccccCCCCCEEEEEeeEEcccCCCCCcccccceeEEEEEEccchhhhhhcCCCCCCceEE-EeCCCc
Confidence 99999999999999999999999999887 467899999999999999 5 79999 999999
Q ss_pred CCCCCCceeEEEecCCC-cCCCCCCCCcccccccccceeeEEeecCCCCCCCCCcCccCCCCCC--ChhhhccCCCceee
Q 040402 420 KTKIGHPVGYRLLPGLV-VGPLLTDDDYPQIRAGFTDYNIWVTPYNKSEKYSGGNYVDQSHGDD--TLLQWTDGNREIEN 496 (567)
Q Consensus 420 ~N~~G~p~gYkl~p~~~-~~~l~~~~s~~~~ra~fa~~~lwVT~y~~~E~~asg~y~~q~~~~~--~l~~~~~~~e~i~~ 496 (567)
+|++|+|+||||+|+++ +++++++++...+||+||+|+||||||+|+|+||||+|++|+.+++ +|++|+ +||+|+|
T Consensus 563 ~N~~G~p~gYkl~p~~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~aag~ynq~~~~~~~~~~~~~~-~~e~I~n 641 (747)
T 1w7c_A 563 TNSFGNPRAYNIMPGGGGVHRIVKNSRSGPETQNWARSNLFLTKHKDTELRSSTALNTNALYDPPVNFNAFL-DDESLDG 641 (747)
T ss_dssp ECTTSCEEEEEEEECTTCCCCSCSSCTTCSSSCGGGGSSEEEEECCTTCCCSCCTTCTTCSSSCSCCGGGGC-SCCBCTT
T ss_pred cCCCCCcceEEEecCCCCcccccCCCchhhhcchhccCcEEEecCCCCccCCCCCccccCCCCCCcchhhhh-CCCcccc
Confidence 99999999999999999 9999999999999999999999999999999999999966666554 488999 9999999
Q ss_pred CCeEEEEEeccccCCCCCCCCCc--cceeeeEEEEeCCCCCCCCcccCCCC
Q 040402 497 KDIVLWYTMGIHHAPCQEDFPVM--PTVSGGFELRPTNFFEYNPVLKVIPP 545 (567)
Q Consensus 497 ~DiV~W~t~G~~H~Pr~ED~Pvm--p~~~~~f~L~P~nFFd~nP~ldvp~~ 545 (567)
+|||+|||||+||+||+|||||| |++++||+|||+|||++||+||+|++
T Consensus 642 ~DiVlW~t~G~~HiPr~ED~PvM~tP~~~~gf~LrP~nFF~~nP~ldvp~~ 692 (747)
T 1w7c_A 642 EDIVAWVNLGLHHLPNSNDLPNTIFSTAHASFMLTPFNYFDSENSRDTTQQ 692 (747)
T ss_dssp EEEEEEEEEEEEECCCGGGSSCBCSSSSEEEEEEEEESSSSSCTTTTCSSE
T ss_pred CceEEEEecccccCCChhhcCCcCCCcceEEEEEEeCCcCCCCCCccCCCc
Confidence 99999999999999999999999 77999999999999999999999987
No 8
>3hi7_A Amiloride-sensitive amine oxidase; oxidoreductase, copper amine oxidase, topaquinone, TPQ, DIAM oxidase, DAO, human, glycoprotein, heparin-binding; HET: TPQ NAG BMA; 1.80A {Homo sapiens} PDB: 3hig_A* 3hii_A* 3k5t_A* 3mph_A*
Probab=100.00 E-value=1.7e-133 Score=1122.74 Aligned_cols=531 Identities=26% Similarity=0.380 Sum_probs=439.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhcC-C--C-------CCeeEEEEEccCCChHHhhhhhcCCCCCCCceEEEEE---------
Q 040402 6 RPLDSLSPAEFTLVQTIVKTSY-P--S-------NNLSFHYVGLDEPDKAVVYSWLSNSKIKIPRRAIVID--------- 66 (567)
Q Consensus 6 HPldpLs~~Ei~~a~~~l~~~~-~--~-------~~~~f~~I~L~EP~K~~vl~~l~~~~~~p~R~A~vV~--------- 66 (567)
-+|++||++|+++|+++|.++. + . .++.+..|+|..|+|++||+|||+++++|+|+|+||.
T Consensus 11 ~vf~dLs~~E~~~V~~~L~~~~~l~Lt~~~~a~~~dN~i~~iEl~~P~K~~vL~~LD~~~~~P~R~A~vvi~fG~~~~P~ 90 (731)
T 3hi7_A 11 GVFSDLSNQELKAVHSFLWSKKELRLQPSSTTTMAKNTVFLIEMLLPKKYHVLRFLDKGERHPVREARAVIFFGDQEHPN 90 (731)
T ss_dssp GGGCCCCHHHHHHHHHHHHTCGGGCBCCTTSSCSSSEEEEEEEEECCCHHHHHHHHHHCCCCCCCEEEEEEEECSSSSCE
T ss_pred CccccCCHHHHHHHHHHHhcCCCCCCcccccCCccCCeEEEEEecCCCchhhhhhhcCCCCCCCcceEEEEEcCCCCCCe
Confidence 4699999999999999999873 2 1 6899999999999999999999998889999999965
Q ss_pred --------CCCCcEEEEEEecCCCC------CCCCHHHHHHHHhhhc-----cCHHHHHHH-------HHcCCCcccc--
Q 040402 67 --------LSRRSIVSDKVYTGHGF------PLLTLEEQRTGAAPVL-----AYEPFKASV-------KKRGLNISDV-- 118 (567)
Q Consensus 67 --------L~~~~v~~~~~~~~~~~------p~~~~eE~~~~~~~~~-----~~p~~~~a~-------~~rgl~~~~v-- 118 (567)
|+.++..+... ++.+. .+++..|+.++..++. ....+++.+ .++||.+..+
T Consensus 91 v~Ey~VGPLP~p~~~~~l~-~~~~~~~p~~~R~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~cL~~~~~~P 169 (731)
T 3hi7_A 91 VTEFAVGPLPGPCYMRALS-PRPGYQSSWASRPISTAEYALLYHTLQEATKPLHQFFLNTTGFSFQDCHDRCLAFTDVAP 169 (731)
T ss_dssp EEEEEEECSSSCCEEEEES-CCTTCCCHHHHSCCCHHHHHHHHHHHHHHTGGGHHHHHHHHSCBSSSCSSSBEEEEECSS
T ss_pred eEEEEEcCCCCCCeeeecc-cCCCCcCCcccCCCcHHHHHHHHHHHHHHHhHHHHHHHHHhCceecCCCCCEEeeecCCC
Confidence 34444333222 22222 3356667877765533 245555554 2234432222
Q ss_pred -----cCceEEEEEEEeeeCCCCCcccCCCCCeEEEEecCC-----ceEEEEe-----------------CCccc----c
Q 040402 119 -----ESKRELKFPCFYTDQGTVNMFLRPIEGITIVVDIEE-----MKVTQYN-----------------DREVA----P 167 (567)
Q Consensus 119 -----~~rR~~~~~~~~~~~~~~n~yahPi~gl~~~vD~~~-----~~v~~i~-----------------d~~~~----~ 167 (567)
+.||+| +.|+| . .+++|.||+ ||+++||+++ ++|.+|- ++... +
T Consensus 170 ~~~~sg~r~~W--~~~~~-~-~~g~~l~P~-gl~~~vDh~~~Dps~W~v~~v~Yng~~y~s~eel~~~y~~g~~~~~~~~ 244 (731)
T 3hi7_A 170 RGVASGQRRSW--LIIQR-Y-VEGYFLHPT-GLELLVDHGSTDAGHWAVEQVWYNGKFYGSPEELARKYADGEVDVVVLE 244 (731)
T ss_dssp CSSSTTCCEEE--EEEEE-C-STTGGGCEE-EEEEEEECCSSSGGGCEEEEEEETTEECSSHHHHHHHHHTTCCCCCCCC
T ss_pred CccCCCCEEEe--hheec-c-CCCceeecc-ceEEEEecCCCChHHcEEEEEEECCEecCCHHHHHHHHhCCCeeEeccC
Confidence 456777 56666 3 447899999 8999999998 6777764 22221 1
Q ss_pred CCCCCCC---------CCCcCCCCC--CCCCCCCCCcc-CCCCCeeEEeCcEEeecceEEEEeecCCccceEEccEEecC
Q 040402 168 IPKSEPT---------EYRWSKLKP--PFGPRLNSVTT-LPTGPGFKIDGNTVKWANWVFNVGFDARVGTIISTASIYDV 235 (567)
Q Consensus 168 ~p~~~~~---------~y~~~~~~~--~~r~~~kP~~i-qPeG~sf~v~g~~V~w~~W~f~~~f~~reGl~L~~v~~~d~ 235 (567)
.+..++. .|..-..++ +.++++||++| ||||+||+|+|++|+||||+||||||+||||+||||+|+|.
T Consensus 245 ~~~~~g~~~~~~~~~~~~s~~~~~~~~~~~~~~kp~~i~QPeG~sF~V~g~~V~W~~W~F~vgfn~reGlvL~dV~y~gr 324 (731)
T 3hi7_A 245 DPLPGGKGHDSTEEPPLFSSHKPRGDFPSPIHVSGPRLVQPHGPRFRLEGNAVLYGGWSFAFRLRSSSGLQVLNVHFGGE 324 (731)
T ss_dssp CCC----------CCCCTTSCCCCSCCSBCCCSCCCEEECTTCCSSEEETTEEEEBTEEEEEEEETTTEEEEEEEEETTE
T ss_pred CCCCcccccccccccccccccccCCCCCCCCCCCCcceeCCCCCCEEEeCCEEEecCcEEEEecCCCCCcEEEeEEECCe
Confidence 1111110 122111233 34778999999 99999999999999999999999999999999999999761
Q ss_pred CCCcccC------------------------------------CCCCCCCCcEEeeeEEEcCCCceeEeCcceEEeeecC
Q 040402 236 DMHKYRR------------------------------------PLKDCPPNAVFIDGYFTSQDGAPIQTPNAICIFERHT 279 (567)
Q Consensus 236 r~~~~R~------------------------------------~G~DCpg~a~YlD~~~~~~~g~p~~~~naiCi~E~d~ 279 (567)
+ -.+|. +||||||+|+|||+++.+++|+|++++|||||||+|.
T Consensus 325 ~-v~YrlSlsEm~VpYgdp~p~~~~k~~fD~GyG~G~~an~L~lGcDCpg~i~YlD~~~~~~~G~p~~~~naICihE~d~ 403 (731)
T 3hi7_A 325 R-IAYEVSVQEAVALYGGHTPAGMQTKYLDVGWGLGSVTHELAPGIDCPETATFLDTFHYYDADDPVHYPRALCLFEMPT 403 (731)
T ss_dssp E-EEEEEEEEEEEEEECCSSHHHHHCEEEGGGGTGGGCCCCCCBTTTBCTTSEEEEEEEEESCSSCEEEEEEEEEEEEEC
T ss_pred e-EEEEeeeeeeEEccCCCCCccccceeeecCcCccccccccccCCCCCCCCEEEeeEEecCCCCEEecCCEEEEEEeeC
Confidence 1 11111 8999999999999999999999999999999999997
Q ss_pred CCccccccc--cCCCCceeeeeeceEEEEEEEEEeeccceEEEEEEeeCccEEEEEEEeeeEEeeccccc--cCCCCccc
Q 040402 280 GDVMWRHTE--AEMPGDVREVRPEVSLVVRMVATVGNYDYVIDWEFKPSGSIKLGCKVRPVEYTHIDQIK--EDQQGKLV 355 (567)
Q Consensus 280 ~g~l~kH~~--~~~~~~~~~~r~~~~LVvr~i~TVgNYdYi~~~~F~~dGtIe~~v~v~atg~~~~~~~~--~~~yG~~V 355 (567)
|.++|||++ ++++..++.++++++||||+|+|||||||||+|+|||||+||++| +||||+++..+. +.+||++|
T Consensus 404 Gi~~~kHtd~~~r~~~~~~~~~r~r~LVvr~I~TVgNYDYif~w~F~qdGsIe~eV--raTGilst~~~~~~~~~yGt~V 481 (731)
T 3hi7_A 404 GVPLRRHFNSNFKGGFNFYAGLKGQVLVLRTTSTVYNADYIWDFIFYPNGVMEAKM--HATGYVHATFYTPEGLRHGTRL 481 (731)
T ss_dssp SSCSEEEEEECSSSSEEEEEEECCEEEEEEEEECSSSEEEEEEEEECTTSCEEEEE--EEEECCCEEECCGGGGGSEEEE
T ss_pred CeeEEEecccccCCccceeecccccEEEEEEeeecccccEEEEEEEecCCeEEEEE--EEEEEEeecccCCCCCCCccee
Confidence 777999976 454322456777889999999999999999999999999999987 999999976653 47899999
Q ss_pred cCCcccccccEEEeeeeeecccCCCCeEEEEEE------------------EEEEEeeeChHhHhhccCC-CCcEEEEEc
Q 040402 356 ADNTIGVNHDHFLNYYLDLDIDGYANSFEKTKL------------------TVEKETAKTEFEARLKLDT-KPMEFAMVN 416 (567)
Q Consensus 356 ~~~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~------------------~~~~~~~~tE~~a~~~~~~-~~r~~~i~N 416 (567)
+|+++|++|||+|||||||||||.+|||+++|+ ++++++++||++|+++++. ++|+|+|+|
T Consensus 482 ~p~v~a~~HqH~f~~RlD~dIDG~~Nsv~~~d~~~~~~~nP~~~~~~~~~~~~~~t~l~tE~ea~~~~~~~~~R~~~i~N 561 (731)
T 3hi7_A 482 HTHLIGNIHTHLVHYRVDLDVAGTKNSFQTLQMKLENITNPWSPRHRVVQPTLEQTQYSWERQAAFRFKRKLPKYLLFTS 561 (731)
T ss_dssp ETTEEEECEEEEEEEEEEECTTSSEEEEEEEEEEEEEEECTTCTTSEEEEEEEEEEEECBGGGGCBCTTSCCCSEEEEEE
T ss_pred cCCcccccceeEEEEEeccccCCCCCEEEEEeceecCCCCCCCCCccceeEEEEEEEccchhhhhhccCCCCceEEEEeC
Confidence 999999999999999999999999999999887 5678999999999999999 999999999
Q ss_pred CCCCCCCCCceeEEEecCCCcCCCCCCCCcccccccccceeeEEeecCCCCCCCCCcCccCCCCCC--ChhhhccCCCce
Q 040402 417 PNKKTKIGHPVGYRLLPGLVVGPLLTDDDYPQIRAGFTDYNIWVTPYNKSEKYSGGNYVDQSHGDD--TLLQWTDGNREI 494 (567)
Q Consensus 417 ~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~~~E~~asg~y~~q~~~~~--~l~~~~~~~e~i 494 (567)
+ ++|++|+|+||||+|++.+.+++.++|...+||+||+|+||||||+|+|+||||+|++|+++++ +|++|+++||+|
T Consensus 562 ~-~~N~~G~pvgYkl~p~~~~~~~l~~~s~~~rra~fa~~~lwVT~y~d~E~~aag~y~~~s~~~~~~gl~~w~~~~e~I 640 (731)
T 3hi7_A 562 P-QENPWGHKRSYRLQIHSMADQVLPPGWQEEQAITWARYPLAVTKYRESELCSSSIYHQNDPWDPPVVFEQFLHNNENI 640 (731)
T ss_dssp E-EECTTSCEEEEEEEEECCCCCCSCTTSGGGGGGGGGGCSEEEEECCGGGSCSCCTTTTTCSSSCSCCTTHHHHTCCBC
T ss_pred C-CcCCCCCceeEEEccCCccccccCCcchhhhhchhcccceEEecCCCCccCCCccccccCCCCCCCCHHHHhhCCCce
Confidence 9 8999999999999999887777779999999999999999999999999999999998887764 799999999999
Q ss_pred eeCCeEEEEEeccccCCCCCCCCCc--cceeeeEEEEeCCCCCCCCcccCCCCC
Q 040402 495 ENKDIVLWYTMGIHHAPCQEDFPVM--PTVSGGFELRPTNFFEYNPVLKVIPPK 546 (567)
Q Consensus 495 ~~~DiV~W~t~G~~H~Pr~ED~Pvm--p~~~~~f~L~P~nFFd~nP~ldvp~~~ 546 (567)
+|||||+|+|||+||+||+|||||| |++++||+|||+|||++||+||+|++.
T Consensus 641 ~n~DiV~W~t~G~~HiPr~ED~PvMptp~e~~~f~LrP~nFFd~nPalds~~~v 694 (731)
T 3hi7_A 641 ENEDLVAWVTVGFLHIPHSEDIPNTATPGNSVGFLLRPFNFFPEDPSLASRDTV 694 (731)
T ss_dssp SSEEEEEEEEEEEEECCCGGGSSCBCSTTCEEEEEEEEESSSSSCGGGGCTTCE
T ss_pred ecCceEEEEecccccCCChhhcCccccccceeEEEEEccCCCCCCccccCcceE
Confidence 9999999999999999999999999 559999999999999999999999863
No 9
>3pgb_A Putative uncharacterized protein; oxidoreductase, copper amine oxidase, CAO, topaquinone, TPQ; HET: TPQ NAG BMA MAN; 2.45A {Emericella nidulans}
Probab=100.00 E-value=5.4e-132 Score=1111.95 Aligned_cols=531 Identities=21% Similarity=0.321 Sum_probs=427.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcC-C--C-------CCeeEEEEEccCCChHHhhhhhcCCCCCCCceEEEEE--------
Q 040402 5 HRPLDSLSPAEFTLVQTIVKTSY-P--S-------NNLSFHYVGLDEPDKAVVYSWLSNSKIKIPRRAIVID-------- 66 (567)
Q Consensus 5 ~HPldpLs~~Ei~~a~~~l~~~~-~--~-------~~~~f~~I~L~EP~K~~vl~~l~~~~~~p~R~A~vV~-------- 66 (567)
+.+|++||++|+++|+++|.++. + . .++.+..|+|+.|+|++||+|||+++++|+|+|+||.
T Consensus 65 ~~vfadLs~~E~~aV~~~L~~~~~l~Lt~~~~a~~~dN~i~~iEl~~P~K~~vL~~LD~~~~~P~R~A~vvi~fG~~~~P 144 (797)
T 3pgb_A 65 ENVWYGLTDDETADVAKWLFGRPELNLTTTENAGEWDNTIALIELHRPNKSEAIPYLDGSGPAPTRHAHVRLNNRATTDP 144 (797)
T ss_dssp CCSSSCCCHHHHHHHHHHHHTCTTTCCCCTTTCCSSSEEEEEEEEECCCHHHHHHHHHC---CCCCEEEEEEEECSSSSC
T ss_pred CCcccccCHHHHHHHHHHHhcCCCCCCcccccCCccCCeEEEEEeeCCCHHHHHHhhcCCCCCCCeeEEEEEEcCCCCCC
Confidence 58999999999999999999874 2 1 6889999999999999999999998889999999955
Q ss_pred ---------CCCC--cEEEEEEec--C-C-C-----CCCCCHHHHHHHHhhhccCH-HHHHHHHH-------cCCCcccc
Q 040402 67 ---------LSRR--SIVSDKVYT--G-H-G-----FPLLTLEEQRTGAAPVLAYE-PFKASVKK-------RGLNISDV 118 (567)
Q Consensus 67 ---------L~~~--~v~~~~~~~--~-~-~-----~p~~~~eE~~~~~~~~~~~p-~~~~a~~~-------rgl~~~~v 118 (567)
|+.+ +..+....+ + . + ..+++..|+..+..+++.-. ..++.+.. .+|.+..+
T Consensus 145 ~v~Ey~VGPLP~p~~t~~~~l~~~y~~~~~g~~~~~~r~~~~~e~~~l~~~~~~~~~~~~~l~~~t~~~~~~~~L~~~~~ 224 (797)
T 3pgb_A 145 YFADILVGPLPVSNATTWEPLEFPYTRKTQGQVRNVEPDGETVYSEWLFKISASIADITLDLWNGTALGLENDTLDIWGI 224 (797)
T ss_dssp EEEEEEEESSSCSTTCEEEECCTTCSSCSTTEEECSCCCTTHHHHTTHHHHHHHTHHHHHHHHSCCCSSSTTCCEEEEEC
T ss_pred ceEEEEEcCCCCCCcceeEEccccccCCCCCCCCcccCcchhhHHHHHHHHHHHHHHHHHHHhhcccccCCCCeEeeecc
Confidence 3333 222221110 1 1 1 12245667766666644332 22222211 12211111
Q ss_pred -----cCceEEEEEEEeeeCCC--CCcccCCCCCeEEEEecCC-----ceEEEEeC-----------------CccccCC
Q 040402 119 -----ESKRELKFPCFYTDQGT--VNMFLRPIEGITIVVDIEE-----MKVTQYND-----------------REVAPIP 169 (567)
Q Consensus 119 -----~~rR~~~~~~~~~~~~~--~n~yahPi~gl~~~vD~~~-----~~v~~i~d-----------------~~~~~~p 169 (567)
++.+...+++|+|.-+. +++|+||+ ||+++||+++ ++|.+|-. +....+.
T Consensus 225 ~P~g~~sg~r~~W~~~~~~~~g~~d~~~lhP~-gl~~lvDh~~~Dps~W~v~~v~Yng~~y~s~eel~~~y~~g~~~~~~ 303 (797)
T 3pgb_A 225 DPLWQDDGRIIRWDMFWNMADDEFDSETLLPL-GLYLKSDVTGRDPSQWKLLGWMYNDIFYETTEEFRKAYWSPGFVKLK 303 (797)
T ss_dssp SSCBCSTTCCEEEEEEEECCCTTCCCGGGCEE-EEEEEEECCSSCGGGCEEEEEEETTEEESSHHHHHHHHTSTTCCCCC
T ss_pred CCCCcCCCCEEEeeeeeccCCCccccceeecc-ceEEEEecCCCChhHcEEEEEEECCEecCCHHHHHHHHhCCCeeecC
Confidence 22222244777773222 56999999 8999999996 67777641 2221222
Q ss_pred CCCCCCCCcCCCCC--CCCCCCCCCcc-CCCCCeeEEe--CcEEeecceEEEEeecCCccceEEccEEecCCCCcccC--
Q 040402 170 KSEPTEYRWSKLKP--PFGPRLNSVTT-LPTGPGFKID--GNTVKWANWVFNVGFDARVGTIISTASIYDVDMHKYRR-- 242 (567)
Q Consensus 170 ~~~~~~y~~~~~~~--~~r~~~kP~~i-qPeG~sf~v~--g~~V~w~~W~f~~~f~~reGl~L~~v~~~d~r~~~~R~-- 242 (567)
+..+..|.....++ ++|+++||++| ||||+||+|+ |++|+||||+||||||+||||+||||+|+| |.-.+|.
T Consensus 304 ~~~~g~ws~~~~~g~~~~~~~lkP~~i~QPeGpsF~V~g~g~~V~W~~W~F~vgfn~ReGlvL~dV~y~g-r~V~YrlSl 382 (797)
T 3pgb_A 304 PNVDGAWAHTEQRGPVPPQDRKQPPVMIAPDGARYSVDAERKYVTWMDFSFYIAFNRDTGLSLFDIKYKG-QRVLYELGL 382 (797)
T ss_dssp CCCCCGGGCCSCCSCCCTTTTSCCCCCCCTTCCCSEEETTTTEEEETTEEEEEEEETTTEEEEEEEEETT-EEEEEEEEE
T ss_pred CCCCCcccccccCCCCCCcCCCCCceeeCCCCCCEEEecCCCEEEeCCcEEEEecCCCCceEEEccccCC-eeEEEEeEe
Confidence 22223443212222 35789999999 9999999997 799999999999999999999999999966 2111111
Q ss_pred ----------------------------------CCCCCCCCcEEeeeEEEcCCCceeEeCcceEEeeecCCCccccccc
Q 040402 243 ----------------------------------PLKDCPPNAVFIDGYFTSQDGAPIQTPNAICIFERHTGDVMWRHTE 288 (567)
Q Consensus 243 ----------------------------------~G~DCpg~a~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~ 288 (567)
+||||||+|+|||+++.++ |+|++++|||||||+|+|.|||||++
T Consensus 383 sEm~VPYg~~~P~~~~~af~D~eyG~G~~an~L~lGcDCpg~i~YlD~~~~~~-~~p~~~~NaICihE~D~G~~lwKHt~ 461 (797)
T 3pgb_A 383 QEALAHYAANDPVQSSVAYLDSYYGFGPYAFELLKGYDCPSYASYLNTSFYKD-EETHTHVDSLCLFEFDADYPMARHST 461 (797)
T ss_dssp EEEEEEECCSSHHHHHCEEEGGGTCSGGGCCCCCBTTTBCTTCEEEEEEEEET-TEEEEEEEEEEEEEEECSSCSEEEEC
T ss_pred eeeEEeCCCCChhhhcceeeecccCCccccccCccCCCCCCCCEEeeeEEecC-CCceEeccEEEEEEeeCCceeEEecc
Confidence 8999999999999999987 67999999999999997778999999
Q ss_pred cCCCCceeeeeeceEEEEEEEEEeeccceEEEEEEeeCccEEEEEEEeeeEEeeccccc-cCCCCccccCCcccccccEE
Q 040402 289 AEMPGDVREVRPEVSLVVRMVATVGNYDYVIDWEFKPSGSIKLGCKVRPVEYTHIDQIK-EDQQGKLVADNTIGVNHDHF 367 (567)
Q Consensus 289 ~~~~~~~~~~r~~~~LVvr~i~TVgNYdYi~~~~F~~dGtIe~~v~v~atg~~~~~~~~-~~~yG~~V~~~~~a~~HqH~ 367 (567)
.. . +.++++++||||+|+|||||||||+|+|||||+||++| +||||+++.... +.+||++|+|+++|++|||+
T Consensus 462 ~~--~--~~v~r~r~LVvr~I~TVgNYDYif~w~F~qdGsIe~eV--raTGiLst~~~~~~~~yGt~V~p~v~a~~HqH~ 535 (797)
T 3pgb_A 462 SE--F--VSVTKNVYFTLRSVSTIGNADYMFSYNFHMDGTIGVEV--RASGYIQSAYYANNQDFGYQIHDSLSGSMHDHV 535 (797)
T ss_dssp SS--E--EEEECCEEEEEEEEEEETTEEEEEEEEECTTSCEEEEE--EEEECCCCEECTTCGGGCCEEETTEECCCEEEE
T ss_pred CC--c--ceEEeccEEEEEEEeeeccccEEEEEEEecCCeEEEEE--EEEEEEEecccCCCCCccceecCCccccccceE
Confidence 52 2 34555569999999999999999999999999999987 999999876433 57899999999999999999
Q ss_pred EeeeeeecccCCCCeEEEEEE------------------EEEEEeeeChHhHhhccCC-CCcEEEEEcCCCCCCCCCcee
Q 040402 368 LNYYLDLDIDGYANSFEKTKL------------------TVEKETAKTEFEARLKLDT-KPMEFAMVNPNKKTKIGHPVG 428 (567)
Q Consensus 368 f~~RlD~dIdG~~Nsv~~~d~------------------~~~~~~~~tE~~a~~~~~~-~~r~~~i~N~~~~N~~G~p~g 428 (567)
|||||||||||.+|||+++|+ ++++++++||.+|+++++. ++|+|+|+|++++|++|+|+|
T Consensus 536 f~~RlD~dIDG~~Nsv~~~d~~~~~~~~p~~p~~~~n~~~~~~t~l~tE~eA~~~~~~~~~r~~~ivN~~~~N~~G~pvg 615 (797)
T 3pgb_A 536 LNFKADFDILGPNNTIELVSVVPVTKQFSWSGNKTRNTMQLGRSFIHSEDEARLNWGFNGQTQLHVVNQDKPNKFGEPRG 615 (797)
T ss_dssp EEEEEEECTTSSEEEEEEEEEEEEEEECTTTTTCEEEEEEEEEEECCBGGGCEECCCGGGCEEEEEEEEEEECTTSCEEE
T ss_pred EEEeeccCCCCCCCeEEEEeeEEccCCCCCCCCcccceeEEEEEEccchhhhhhhcCCCCCceEEEeCCCCcCCCCCeee
Confidence 999999999999999999988 5788999999999999999 999999999999999999999
Q ss_pred EEEecCCCcCCCCCCCC-cccccccccceeeEEeecCCCCCCCCCcCccCCCCCC--ChhhhccCCCceeeCCeEEEEEe
Q 040402 429 YRLLPGLVVGPLLTDDD-YPQIRAGFTDYNIWVTPYNKSEKYSGGNYVDQSHGDD--TLLQWTDGNREIENKDIVLWYTM 505 (567)
Q Consensus 429 Ykl~p~~~~~~l~~~~s-~~~~ra~fa~~~lwVT~y~~~E~~asg~y~~q~~~~~--~l~~~~~~~e~i~~~DiV~W~t~ 505 (567)
|||+|++++++|+.++| ..++||+||+|+||||||+|+|+||||+|++|+++++ ++.+|+ +||+|+|||||+||||
T Consensus 616 YkL~p~~~~~~L~~~~s~~~~rra~fa~~~lwVT~y~d~E~~aaG~y~~qs~~~~~v~~~~~~-~nesI~neDiVlW~t~ 694 (797)
T 3pgb_A 616 YRILPSAGTAHLTVLNSSNLVHAAHWAEYDVQVTRQHDFEPTSAHPYNSQDIHNPPVDFSTFF-NGESLNQTDLVVWLNL 694 (797)
T ss_dssp EEEECSSCCCCCCCSSCTTTTTTTGGGGCSEEEEECCTTCCCSCCTTGGGCTTSCSCCGGGGC-SCCBCSSEEEEEEEEE
T ss_pred EEEccCCCCccccCCCchhhhhhchhhhCceEEecCCCCccCCCCCCcccCCCCCccchhhhc-CCCccccCceEEEEec
Confidence 99999987777775555 5788999999999999999999999999999998875 357788 9999999999999999
Q ss_pred ccccCCCCCCCCC--ccceeeeEEEEeCCCCCCCCcccCCCC
Q 040402 506 GIHHAPCQEDFPV--MPTVSGGFELRPTNFFEYNPVLKVIPP 545 (567)
Q Consensus 506 G~~H~Pr~ED~Pv--mp~~~~~f~L~P~nFFd~nP~ldvp~~ 545 (567)
|+||+||+||||| ||++++||+|||+|||++||+||+|++
T Consensus 695 G~~HiPr~ED~Pvt~MP~e~~gf~LrP~nFFd~NPald~~~~ 736 (797)
T 3pgb_A 695 GMHHVPHTGDLPNTVFTTAHSGVAFTPLNYLPGDPSRETVNM 736 (797)
T ss_dssp EEEECCCGGGSSCBCTTTSEEEEEEEEESCSSSCGGGGCSCE
T ss_pred ccccCCChhhCCCccCCcceeEEEEEcCCCCCCCccccCccc
Confidence 9999999999999 999999999999999999999999975
No 10
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=26.47 E-value=37 Score=26.08 Aligned_cols=20 Identities=20% Similarity=0.235 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHHHHHh
Q 040402 6 RPLDSLSPAEFTLVQTIVKT 25 (567)
Q Consensus 6 HPldpLs~~Ei~~a~~~l~~ 25 (567)
-|+..||.+||++++++|+.
T Consensus 58 p~~~~Ls~~ei~~l~~yl~~ 77 (79)
T 2d0s_A 58 PPHPQVAEADIEKIVRWVLT 77 (79)
T ss_dssp CCCTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHh
Confidence 35778999999999999975
No 11
>2cs7_A Pneumococcal histidine triad A protein; PHTA, pneumococcal histidine triad protein, structural genomics, unknown function; 1.20A {Streptococcus pneumoniae} SCOP: d.9.2.1
Probab=26.25 E-value=24 Score=27.05 Aligned_cols=18 Identities=22% Similarity=0.479 Sum_probs=16.1
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 040402 7 PLDSLSPAEFTLVQTIVK 24 (567)
Q Consensus 7 PldpLs~~Ei~~a~~~l~ 24 (567)
|-++||+.|+++|.++|.
T Consensus 37 pk~~Ls~~el~~A~~yl~ 54 (55)
T 2cs7_A 37 PKNELSASELAAAEAFLS 54 (55)
T ss_dssp EGGGSCHHHHHHHHHHHH
T ss_pred EhHHCCHHHHHHHHHHhc
Confidence 678999999999999875
No 12
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=23.02 E-value=39 Score=26.06 Aligned_cols=20 Identities=20% Similarity=0.169 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHHHHHh
Q 040402 6 RPLDSLSPAEFTLVQTIVKT 25 (567)
Q Consensus 6 HPldpLs~~Ei~~a~~~l~~ 25 (567)
-|+..||.+||++++++|+.
T Consensus 60 p~~~~Ls~~ei~~l~~yl~~ 79 (81)
T 1a56_A 60 PPNVNVSDADAKALADWILT 79 (81)
T ss_dssp CSCCSSSSHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHh
Confidence 45778999999999999985
No 13
>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1
Probab=20.73 E-value=59 Score=25.07 Aligned_cols=20 Identities=0% Similarity=0.021 Sum_probs=16.7
Q ss_pred CC-CCCCHHHHHHHHHHHHhc
Q 040402 7 PL-DSLSPAEFTLVQTIVKTS 26 (567)
Q Consensus 7 Pl-dpLs~~Ei~~a~~~l~~~ 26 (567)
|+ +.||.+||.+++++|+..
T Consensus 57 ~~~~~Lsd~ei~~l~~yi~~~ 77 (78)
T 1gks_A 57 AYDGRADREDLVKAIEYMLST 77 (78)
T ss_dssp CCBTTBCHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHhh
Confidence 45 369999999999999864
Done!