BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040403
(623 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AW5|A Chain A, Crystal Structure Of A Human Malic Enzyme
pdb|2AW5|B Chain B, Crystal Structure Of A Human Malic Enzyme
pdb|2AW5|C Chain C, Crystal Structure Of A Human Malic Enzyme
Length = 575
Score = 387 bits (995), Expect = e-108, Method: Compositional matrix adjust.
Identities = 201/525 (38%), Positives = 309/525 (58%), Gaps = 29/525 (5%)
Query: 44 KRSLDILHDPWFNKGTAFSMTEXXXXXXXXXXPPNVMSTDQQIERFMVDLKRLEVQARDG 103
+R + +P NK AF++ E PP+ S + Q+ R + + + L
Sbjct: 24 QRGYLLTRNPHLNKDLAFTLEERQQLNIHGLLPPSFNSQEIQVLRVVKNFEHLN------ 77
Query: 104 PTDPNALAKWRILNRLHDRNETMYYKVLIANIEEYAPIVYTPTVGLVCQNYSGLFRRPRG 163
+ ++ +L L DRNE ++Y+VL ++IE++ PIVYTPTVGL CQ YS +FR+PRG
Sbjct: 78 ----SDFDRYLLLMDLQDRNEKLFYRVLTSDIEKFMPIVYTPTVGLACQQYSLVFRKPRG 133
Query: 164 MYFSAEDRGEMKSMVYNWPAEQVDMIVVTDGSRILGLGDLGVQGIGIAVGKLDLYVAAAG 223
++ + DRG + S++ WP + + IVVTDG RILGLGDLG G+GI VGKL LY A G
Sbjct: 134 LFITIHDRGHIASVLNAWPEDVIKAIVVTDGERILGLGDLGCNGMGIPVGKLALYTACGG 193
Query: 224 INPQRVLPIMIDVGTTNEKLLKDPLYLGLQEHRLDGDEYVSVIDEFMEAIFTRWP-NVIV 282
+NPQ LP+++DVGT NE+LLKDPLY+GL++ R+ G EY +DEFMEA+ +++ N ++
Sbjct: 194 MNPQECLPVILDVGTENEELLKDPLYIGLRQRRVRGSEYDDFLDEFMEAVSSKYGMNCLI 253
Query: 283 QFEDFQSKWAFKLLQRYRYKYRMFNDDXXXXXXXXXXXXXXXXXXXXXSMIDFPKQKIXX 342
QFEDF + AF+LL +YR +Y FNDD + + K K+
Sbjct: 254 QFEDFANVNAFRLLNKYRNQYCTFNDD--------IQGTASVAVAGLLAALRITKNKLSD 305
Query: 343 XXXXXXXXXXXXXXRKTMARMLGNNES-AFDSARSQFWVVDAKGLITEDRENIDPDAKPF 401
+ M E + A + W+VD+KGLI + R ++ + + F
Sbjct: 306 QTILFQGAGEAALGIAHLIVMALEKEGLPKEKAIKKIWLVDSKGLIVKGRASLTQEKEKF 365
Query: 402 ARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFA 461
A + E+ +L +VQ++KP L+G++A+GG FS+++L+ M + + RP IFA
Sbjct: 366 AHEHEEMK--------NLEAIVQEIKPTALIGVAAIGGAFSEQILKDM-AAFNERPIIFA 416
Query: 462 MSNPTNNAECTPEEAFSIVGDNIIFASGSPFKDVDLGNGHIGHCNQGNNMYLFPGVGLGT 521
+SNPT+ AEC+ E+ + I IFASGSPF V L NG + QGNN Y+FPGV LG
Sbjct: 417 LSNPTSKAECSAEQCYKITKGRAIFASGSPFDPVTLPNGQTLYPGQGNNSYVFPGVALGV 476
Query: 522 LLSGSRIISDGMLQAAAECLAEYMTEEEVVKGKIYPSISSIRNIT 566
+ G R I+D + AE +A+ ++++ + +G++YP +++IR+++
Sbjct: 477 VACGLRQITDNIFLTTAEVIAQQVSDKHLEEGRLYPPLNTIRDVS 521
>pdb|1GQ2|A Chain A, Malic Enzyme From Pigeon Liver
pdb|1GQ2|B Chain B, Malic Enzyme From Pigeon Liver
pdb|1GQ2|C Chain C, Malic Enzyme From Pigeon Liver
pdb|1GQ2|D Chain D, Malic Enzyme From Pigeon Liver
pdb|1GQ2|E Chain E, Malic Enzyme From Pigeon Liver
pdb|1GQ2|F Chain F, Malic Enzyme From Pigeon Liver
pdb|1GQ2|G Chain G, Malic Enzyme From Pigeon Liver
pdb|1GQ2|H Chain H, Malic Enzyme From Pigeon Liver
pdb|1GQ2|I Chain I, Malic Enzyme From Pigeon Liver
pdb|1GQ2|J Chain J, Malic Enzyme From Pigeon Liver
pdb|1GQ2|K Chain K, Malic Enzyme From Pigeon Liver
pdb|1GQ2|L Chain L, Malic Enzyme From Pigeon Liver
pdb|1GQ2|M Chain M, Malic Enzyme From Pigeon Liver
pdb|1GQ2|N Chain N, Malic Enzyme From Pigeon Liver
pdb|1GQ2|O Chain O, Malic Enzyme From Pigeon Liver
pdb|1GQ2|P Chain P, Malic Enzyme From Pigeon Liver
Length = 555
Score = 384 bits (986), Expect = e-107, Method: Compositional matrix adjust.
Identities = 199/525 (37%), Positives = 298/525 (56%), Gaps = 29/525 (5%)
Query: 44 KRSLDILHDPWFNKGTAFSMTEXXXXXXXXXXPPNVMSTDQQIERFMVDLKRLEVQARDG 103
K+ ++L DP NKG AF++ E PP + D Q+ + + +RL
Sbjct: 1 KKGYEVLRDPHLNKGXAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLT------ 54
Query: 104 PTDPNALAKWRILNRLHDRNETMYYKVLIANIEEYAPIVYTPTVGLVCQNYSGLFRRPRG 163
+ L ++ +L L DRNE ++YKVL ++IE + PIVYTPTVGL CQ+Y FRRPRG
Sbjct: 55 ----SDLDRYILLXSLQDRNEKLFYKVLTSDIERFXPIVYTPTVGLACQHYGLAFRRPRG 110
Query: 164 MYFSAEDRGEMKSMVYNWPAEQVDMIVVTDGSRILGLGDLGVQGIGIAVGKLDLYVAAAG 223
++ + DRG + + + +WP + IVVTDG RILGLGDLG G GI VGKL LY A G
Sbjct: 111 LFITIHDRGHIATXLQSWPESVIKAIVVTDGERILGLGDLGCYGXGIPVGKLALYTACGG 170
Query: 224 INPQRVLPIMIDVGTTNEKLLKDPLYLGLQEHRLDGDEYVSVIDEFMEAIFTRW-PNVIV 282
+ P + LP+ +DVGT NE LLKDPLY+GL+ R+ G Y ++DEF EA+ +R+ N ++
Sbjct: 171 VKPHQCLPVXLDVGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFXEAVTSRYGXNCLI 230
Query: 283 QFEDFQSKWAFKLLQRYRYKYRMFNDDXXXXXXXXXXXXXXXXXXXXXSMIDFPKQKIXX 342
QFEDF + AF+LL +YR KY FNDD + + K ++
Sbjct: 231 QFEDFANANAFRLLHKYRNKYCTFNDD--------IQGTASVAVAGLLAALRITKNRLSD 282
Query: 343 XXXXXXXXXXXXXXRKTMARMLGNNES-AFDSARSQFWVVDAKGLITEDRENIDPDAKPF 401
+ E + + A + W VD+KGLI + R ++ P+ + F
Sbjct: 283 HTVLFQGAGEAALGIANLIVXAXQKEGVSKEEAIKRIWXVDSKGLIVKGRASLTPEKEHF 342
Query: 402 ARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFA 461
A + E +L ++V+ +KP VL+G++A+GG F++++L+ + + RP IFA
Sbjct: 343 AHE--------HCEXKNLEDIVKDIKPTVLIGVAAIGGAFTQQILQDX-AAFNKRPIIFA 393
Query: 462 MSNPTNNAECTPEEAFSIVGDNIIFASGSPFKDVDLGNGHIGHCNQGNNMYLFPGVGLGT 521
+SNPT+ AECT E+ + IFASGSPF V L +G + QGNN Y+FPGV LG
Sbjct: 394 LSNPTSKAECTAEQLYKYTEGRGIFASGSPFDPVTLPSGQTLYPGQGNNSYVFPGVALGV 453
Query: 522 LLSGSRIISDGMLQAAAECLAEYMTEEEVVKGKIYPSISSIRNIT 566
+ G + I D + AE +A+ ++EE + +G++YP + +I+ ++
Sbjct: 454 ISCGLKHIGDDVFLTTAEVIAQEVSEENLQEGRLYPPLVTIQQVS 498
>pdb|1GZ3|A Chain A, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|B Chain B, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|C Chain C, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|D Chain D, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
Length = 554
Score = 366 bits (940), Expect = e-101, Method: Compositional matrix adjust.
Identities = 205/527 (38%), Positives = 296/527 (56%), Gaps = 26/527 (4%)
Query: 42 VHKRSLDILHDPWFNKGTAFSMTEXXXXXXXXXXPPNVMSTDQQIERFMVDLKRLEVQAR 101
+ ++ ++ +P NKG AF++ E PP + + D Q RF +LK++
Sbjct: 2 IKEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNLKKM----- 56
Query: 102 DGPTDPNALAKWRILNRLHDRNETMYYKVLIANIEEYAPIVYTPTVGLVCQNYSGLFRRP 161
T P L K+ + + +RNE ++Y++L +IE PIVYTPTVGL C Y +FRRP
Sbjct: 57 ---TSP--LEKYIYIMGIQERNEKLFYRILQDDIESLMPIVYTPTVGLACSQYGHIFRRP 111
Query: 162 RGMYFSAEDRGEMKSMVYNWPAEQVDMIVVTDGSRILGLGDLGVQGIGIAVGKLDLYVAA 221
+G++ S DRG ++S+V NWP V +VVTDG RILGLGDLGV G+GI VGKL LY A
Sbjct: 112 KGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTAC 171
Query: 222 AGINPQRVLPIMIDVGTTNEKLLKDPLYLGLQEHRLDGDEYVSVIDEFMEAIFTRWP-NV 280
AGI P + LP+ IDVGT N LLKDP Y+GL + R +Y +IDEFM+AI R+ N
Sbjct: 172 AGIRPDQCLPVCIDVGTDNIALLKDPFYMGLYQKRDRTQQYDDLIDEFMKAITDRYGRNT 231
Query: 281 IVQFEDFQSKWAFKLLQRYRYKYRMFNDDXXXXXXXXXXXXXXXXXXXXXSMIDFPKQKI 340
++QFEDF + AF+ L++YR KY FNDD + + KI
Sbjct: 232 LIQFEDFGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPI---SEHKI 288
Query: 341 XXXXXXXXXXXXXXXXRKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRE-NIDPDAK 399
+M N + A+ + W+ D GL+ + R+ ID +
Sbjct: 289 LFLGAGEAALGIANLIVMSMVE----NGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQE 344
Query: 400 PFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAI 459
PF E S +E A V +KP ++G++ G LF+ +V+ AM S + RP I
Sbjct: 345 PFTHSAPE-SIPDTFEDA-----VNILKPSTIIGVAGAGRLFTPDVIRAM-ASINERPVI 397
Query: 460 FAMSNPTNNAECTPEEAFSIVGDNIIFASGSPFKDVDLGNGHIGHCNQGNNMYLFPGVGL 519
FA+SNPT AECT EEA+++ +FASGSPF V L +G + QGNN+Y+FPGV L
Sbjct: 398 FALSNPTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVAL 457
Query: 520 GTLLSGSRIISDGMLQAAAECLAEYMTEEEVVKGKIYPSISSIRNIT 566
+L +R ISD + AA+ L +T+EE+ +G++YP +++I+ ++
Sbjct: 458 AVILCNTRHISDSVFLEAAKALTSQLTDEELAQGRLYPPLANIQEVS 504
>pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1LLQ|B Chain B, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1O0S|A Chain A, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
With Nadh
pdb|1O0S|B Chain B, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
With Nadh
Length = 605
Score = 364 bits (934), Expect = e-101, Method: Compositional matrix adjust.
Identities = 199/530 (37%), Positives = 298/530 (56%), Gaps = 30/530 (5%)
Query: 40 VIVHKRSLDILHDPWFNKGTAFSMTEXXXXXXXXXXPPNVMSTDQQIERFMVDLKRLEVQ 99
V KRS ++L +P NKG FS+ E PP M+ +QQ R + L+
Sbjct: 33 VTPKKRSAELLKEPRLNKGMGFSLYERQYLGLHGLLPPAFMTQEQQAYRVITKLRE---- 88
Query: 100 ARDGPTDPNALAKWRILNRLHDRNETMYYKVLIANIEEYAPIVYTPTVGLVCQNYSGLFR 159
PN LA++ L+ L DRNE ++Y+V+ +++E PIVYTPTVGL CQN+ ++R
Sbjct: 89 ------QPNDLARYIQLDGLQDRNEKLFYRVVCDHVKELMPIVYTPTVGLACQNFGYIYR 142
Query: 160 RPRGMYFSAEDRGEMK--SMVYNWPAEQVDMIVVTDGSRILGLGDLGVQGIGIAVGKLDL 217
+P+G+Y + D K ++ NW E V IVVTDG RILGLGDLG GIGI VGKL L
Sbjct: 143 KPKGLYITINDNSVSKIYQILSNWHEEDVRAIVVTDGERILGLGDLGAYGIGIPVGKLAL 202
Query: 218 YVAAAGINPQRVLPIMIDVGTTNEKLLKDPLYLGLQEHRLDGDEYVSVIDEFMEAIFTRW 277
YVA G+ P+ LP+++DVGT N LL DP Y+GL+ R+ G +Y +++D FM+A ++
Sbjct: 203 YVALGGVQPKWCLPVLLDVGTNNMDLLNDPFYIGLRHKRVRGKDYDTLLDNFMKACTKKY 262
Query: 278 -PNVIVQFEDFQSKWAFKLLQRYRYKYRMFNDDXXXXXXXXXXXXXXXXXXXXXSMIDFP 336
++QFEDF + AF+LL +Y+ KY MFNDD
Sbjct: 263 GQKTLIQFEDFANPNAFRLLDKYQDKYTMFNDDIQGTASVIVAGLLTCTRVTK------- 315
Query: 337 KQKIXXXXXXXXXXXXXXXXRKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDP 396
K + + + N + + A ++ +++D GL+T++R+ ++P
Sbjct: 316 KLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKEMNP 375
Query: 397 DAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTR 456
FA+ + E + S++EV++ +P L+G S V G F++EV+ AM + R
Sbjct: 376 RHVQFAKDMPETT--------SILEVIRAARPGALIGASTVRGAFNEEVIRAM-AEINER 426
Query: 457 PAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGSPFKDVDLGNGHIGHCNQGNNMYLFPG 516
P IFA+SNPT+ AECT EEA++ ++ASGSPF + +L NGH QGNN Y+FPG
Sbjct: 427 PIIFALSNPTSKAECTAEEAYTFTNGAALYASGSPFPNFEL-NGHTYKPGQGNNAYIFPG 485
Query: 517 VGLGTLLSGSRIISDGMLQAAAECLAEYMTEEEVVKGKIYPSISSIRNIT 566
V LGT+L R + + + AA+ +A +TE+ + G++YP + IR I+
Sbjct: 486 VALGTILFQIRHVDNDLFLLAAKKVASCVTEDSLKVGRVYPQLKEIREIS 535
>pdb|1QR6|A Chain A, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
pdb|1QR6|B Chain B, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
Length = 584
Score = 358 bits (920), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 207/539 (38%), Positives = 294/539 (54%), Gaps = 26/539 (4%)
Query: 30 SFTPSEGQRPVIVHKRSLDILHDPWFNKGTAFSMTEXXXXXXXXXXPPNVMSTDQQIERF 89
S T + R + + ++ + +P NKG AF++ E PP + + D Q RF
Sbjct: 9 STTCTLACRHLHIKEKGKPLXLNPRTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRF 68
Query: 90 MVDLKRLEVQARDGPTDPNALAKWRILNRLHDRNETMYYKVLIANIEEYAPIVYTPTVGL 149
+LK+ T P L K+ + + +RNE ++Y++L +IE PIVYTPTVGL
Sbjct: 69 HRNLKKX--------TSP--LEKYIYIXGIQERNEKLFYRILQDDIESLXPIVYTPTVGL 118
Query: 150 VCQNYSGLFRRPRGMYFSAEDRGEMKSMVYNWPAEQVDMIVVTDGSRILGLGDLGVQGIG 209
C Y +FRRP+G++ S DRG ++S+V NWP V +VVTDG RILGLGDLGV G G
Sbjct: 119 ACSQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGXG 178
Query: 210 IAVGKLDLYVAAAGINPQRVLPIMIDVGTTNEKLLKDPLYLGLQEHRLDGDEYVSVIDEF 269
I VGKL LY A AGI P R LP+ IDVGT N LLKDP Y GL + R +Y +IDEF
Sbjct: 179 IPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEF 238
Query: 270 MEAIFTRWP-NVIVQFEDFQSKWAFKLLQRYRYKYRMFNDDXXXXXXXXXXXXXXXXXXX 328
+AI R+ N ++QFEDF + AF+ L++YR KY FNDD
Sbjct: 239 XKAITDRYGRNTLIQFEDFGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVI 298
Query: 329 XXSMIDFPKQKIXXXXXXXXXXXXXXXXRKTMARMLGNNESAFDSARSQFWVVDAKGLIT 388
+ + KI + N + A+ + W D GL+
Sbjct: 299 SKPI---SEHKILFLGAGEAALGIANLIVXSXV----ENGLSEQEAQKKIWXFDKYGLLV 351
Query: 389 EDRE-NIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLE 447
+ R+ ID +PF E S +E A V +KP ++G++ G LF+ +V+
Sbjct: 352 KGRKAKIDSYQEPFTHSAPE-SIPDTFEDA-----VNILKPSTIIGVAGAGRLFTPDVIR 405
Query: 448 AMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGSPFKDVDLGNGHIGHCNQ 507
A S + RP IFA+SNPT AECT EEA+++ +FASGSPF V L +G + Q
Sbjct: 406 AX-ASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTDGRVFTPGQ 464
Query: 508 GNNMYLFPGVGLGTLLSGSRIISDGMLQAAAECLAEYMTEEEVVKGKIYPSISSIRNIT 566
GNN+Y+FPGV L +L +R ISD + AA+ L +T+EE+ +G++YP +++I+ ++
Sbjct: 465 GNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQLTDEELAQGRLYPPLANIQEVS 523
>pdb|1EFK|A Chain A, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|B Chain B, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|C Chain C, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|D Chain D, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFL|A Chain A, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|B Chain B, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|C Chain C, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|D Chain D, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1PJL|A Chain A, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|B Chain B, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|C Chain C, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|D Chain D, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|E Chain E, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|F Chain F, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|G Chain G, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|H Chain H, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
Length = 584
Score = 358 bits (919), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 207/539 (38%), Positives = 294/539 (54%), Gaps = 26/539 (4%)
Query: 30 SFTPSEGQRPVIVHKRSLDILHDPWFNKGTAFSMTEXXXXXXXXXXPPNVMSTDQQIERF 89
S T + R + + ++ + +P NKG AF++ E PP + + D Q RF
Sbjct: 9 STTCTLACRHLHIKEKGKPLXLNPRTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRF 68
Query: 90 MVDLKRLEVQARDGPTDPNALAKWRILNRLHDRNETMYYKVLIANIEEYAPIVYTPTVGL 149
+LK+ T P L K+ + + +RNE ++Y++L +IE PIVYTPTVGL
Sbjct: 69 HRNLKKX--------TSP--LEKYIYIXGIQERNEKLFYRILQDDIESLXPIVYTPTVGL 118
Query: 150 VCQNYSGLFRRPRGMYFSAEDRGEMKSMVYNWPAEQVDMIVVTDGSRILGLGDLGVQGIG 209
C Y +FRRP+G++ S DRG ++S+V NWP V +VVTDG RILGLGDLGV G G
Sbjct: 119 ACSQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGXG 178
Query: 210 IAVGKLDLYVAAAGINPQRVLPIMIDVGTTNEKLLKDPLYLGLQEHRLDGDEYVSVIDEF 269
I VGKL LY A AGI P R LP+ IDVGT N LLKDP Y GL + R +Y +IDEF
Sbjct: 179 IPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEF 238
Query: 270 MEAIFTRWP-NVIVQFEDFQSKWAFKLLQRYRYKYRMFNDDXXXXXXXXXXXXXXXXXXX 328
+AI R+ N ++QFEDF + AF+ L++YR KY FNDD
Sbjct: 239 XKAITDRYGRNTLIQFEDFGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVI 298
Query: 329 XXSMIDFPKQKIXXXXXXXXXXXXXXXXRKTMARMLGNNESAFDSARSQFWVVDAKGLIT 388
+ + KI + N + A+ + W D GL+
Sbjct: 299 SKPI---SEHKILFLGAGEAALGIANLIVXSXV----ENGLSEQEAQKKIWXFDKYGLLV 351
Query: 389 EDRE-NIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLE 447
+ R+ ID +PF E S +E A V +KP ++G++ G LF+ +V+
Sbjct: 352 KGRKAKIDSYQEPFTHSAPE-SIPDTFEDA-----VNILKPSTIIGVAGAGRLFTPDVIR 405
Query: 448 AMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGSPFKDVDLGNGHIGHCNQ 507
A S + RP IFA+SNPT AECT EEA+++ +FASGSPF V L +G + Q
Sbjct: 406 AX-ASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTDGRVFTPGQ 464
Query: 508 GNNMYLFPGVGLGTLLSGSRIISDGMLQAAAECLAEYMTEEEVVKGKIYPSISSIRNIT 566
GNN+Y+FPGV L +L +R ISD + AA+ L +T+EE+ +G++YP +++I+ ++
Sbjct: 465 GNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQLTDEELAQGRLYPPLANIQEVS 523
>pdb|1GZ4|A Chain A, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|B Chain B, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|C Chain C, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|D Chain D, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
Length = 551
Score = 357 bits (916), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 204/517 (39%), Positives = 285/517 (55%), Gaps = 26/517 (5%)
Query: 52 DPWFNKGTAFSMTEXXXXXXXXXXPPNVMSTDQQIERFMVDLKRLEVQARDGPTDPNALA 111
+P NKG AF++ E PP + + D Q RF +LK+ T P L
Sbjct: 9 NPRTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRFHRNLKKX--------TSP--LE 58
Query: 112 KWRILNRLHDRNETMYYKVLIANIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAEDR 171
K+ + + +RNE ++Y++L +IE PIVYTPTVGL C Y +FRRP+G++ S DR
Sbjct: 59 KYIYIXGIQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRPKGLFISISDR 118
Query: 172 GEMKSMVYNWPAEQVDMIVVTDGSRILGLGDLGVQGIGIAVGKLDLYVAAAGINPQRVLP 231
G ++S+V NWP V +VVTDG RILGLGDLGV G GI VGKL LY A AGI P R LP
Sbjct: 119 GHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLP 178
Query: 232 IMIDVGTTNEKLLKDPLYLGLQEHRLDGDEYVSVIDEFMEAIFTRWP-NVIVQFEDFQSK 290
+ IDVGT N LLKDP Y GL + R +Y +IDEF +AI R+ N ++QFEDF +
Sbjct: 179 VCIDVGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQFEDFGNH 238
Query: 291 WAFKLLQRYRYKYRMFNDDXXXXXXXXXXXXXXXXXXXXXSMIDFPKQKIXXXXXXXXXX 350
AF+ L++YR KY FNDD + + KI
Sbjct: 239 NAFRFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPI---SEHKILFLGAGEAAL 295
Query: 351 XXXXXXRKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRE-NIDPDAKPFARKVNEIS 409
+ N + A+ + W D GL+ + R+ ID +PF E S
Sbjct: 296 GIANLIVXSXV----ENGLSEQEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFTHSAPE-S 350
Query: 410 RQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNA 469
+E A V +KP ++G++ G LF+ +V+ A S + RP IFA+SNPT A
Sbjct: 351 IPDTFEDA-----VNILKPSTIIGVAGAGRLFTPDVIRAX-ASINERPVIFALSNPTAQA 404
Query: 470 ECTPEEAFSIVGDNIIFASGSPFKDVDLGNGHIGHCNQGNNMYLFPGVGLGTLLSGSRII 529
ECT EEA+++ +FASGSPF V L +G + QGNN+Y+FPGV L +L +R I
Sbjct: 405 ECTAEEAYTLTEGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHI 464
Query: 530 SDGMLQAAAECLAEYMTEEEVVKGKIYPSISSIRNIT 566
SD + AA+ L +T+EE+ +G++YP +++I+ ++
Sbjct: 465 SDSVFLEAAKALTSQLTDEELAQGRLYPPLANIQEVS 501
>pdb|1DO8|A Chain A, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|B Chain B, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|C Chain C, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|D Chain D, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1PJ4|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ2|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ3|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate
Length = 564
Score = 357 bits (915), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 204/517 (39%), Positives = 285/517 (55%), Gaps = 26/517 (5%)
Query: 52 DPWFNKGTAFSMTEXXXXXXXXXXPPNVMSTDQQIERFMVDLKRLEVQARDGPTDPNALA 111
+P NKG AF++ E PP + + D Q RF +LK+ T P L
Sbjct: 11 NPRTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRFHRNLKKX--------TSP--LE 60
Query: 112 KWRILNRLHDRNETMYYKVLIANIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAEDR 171
K+ + + +RNE ++Y++L +IE PIVYTPTVGL C Y +FRRP+G++ S DR
Sbjct: 61 KYIYIXGIQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRPKGLFISISDR 120
Query: 172 GEMKSMVYNWPAEQVDMIVVTDGSRILGLGDLGVQGIGIAVGKLDLYVAAAGINPQRVLP 231
G ++S+V NWP V +VVTDG RILGLGDLGV G GI VGKL LY A AGI P R LP
Sbjct: 121 GHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLP 180
Query: 232 IMIDVGTTNEKLLKDPLYLGLQEHRLDGDEYVSVIDEFMEAIFTRWP-NVIVQFEDFQSK 290
+ IDVGT N LLKDP Y GL + R +Y +IDEF +AI R+ N ++QFEDF +
Sbjct: 181 VCIDVGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQFEDFGNH 240
Query: 291 WAFKLLQRYRYKYRMFNDDXXXXXXXXXXXXXXXXXXXXXSMIDFPKQKIXXXXXXXXXX 350
AF+ L++YR KY FNDD + + KI
Sbjct: 241 NAFRFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPI---SEHKILFLGAGEAAL 297
Query: 351 XXXXXXRKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRE-NIDPDAKPFARKVNEIS 409
+ N + A+ + W D GL+ + R+ ID +PF E S
Sbjct: 298 GIANLIVXSXV----ENGLSEQEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFTHSAPE-S 352
Query: 410 RQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNA 469
+E A V +KP ++G++ G LF+ +V+ A S + RP IFA+SNPT A
Sbjct: 353 IPDTFEDA-----VNILKPSTIIGVAGAGRLFTPDVIRAX-ASINERPVIFALSNPTAQA 406
Query: 470 ECTPEEAFSIVGDNIIFASGSPFKDVDLGNGHIGHCNQGNNMYLFPGVGLGTLLSGSRII 529
ECT EEA+++ +FASGSPF V L +G + QGNN+Y+FPGV L +L +R I
Sbjct: 407 ECTAEEAYTLTEGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHI 466
Query: 530 SDGMLQAAAECLAEYMTEEEVVKGKIYPSISSIRNIT 566
SD + AA+ L +T+EE+ +G++YP +++I+ ++
Sbjct: 467 SDSVFLEAAKALTSQLTDEELAQGRLYPPLANIQEVS 503
>pdb|2A9F|A Chain A, Crystal Structure Of A Putative Malic Enzyme ((S)-
Malate:nad+ Oxidoreductase (Decarboxylating))
pdb|2A9F|B Chain B, Crystal Structure Of A Putative Malic Enzyme ((S)-
Malate:nad+ Oxidoreductase (Decarboxylating))
Length = 398
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 89/387 (22%), Positives = 156/387 (40%), Gaps = 77/387 (19%)
Query: 175 KSMVYNWPAEQVDMIVVTDGSRILGLGDLGVQG-IGIAVGKLDLYVAAAGINPQRVLPIM 233
K++ Y+ ++ + V++DG+ +LGLGD+G + + + GK L+ A AG++ +PI+
Sbjct: 55 KTLAYDLTTKKNTVAVISDGTAVLGLGDIGPEAAMPVMEGKAALFKAFAGVD---AIPIV 111
Query: 234 IDVGTTNEKLLKDPLYLGLQEHRLDGDEYVSVIDEFMEAIFTRWPNVIVQFEDFQSKWAF 293
+D D +E +S++ +A+ + + ED + F
Sbjct: 112 LDTK--------------------DTEEIISIV----KALAPTFGGI--NLEDISAPRCF 145
Query: 294 KLLQRYRYKYRM--FNDDXXXXXXXXXXXXXXXXXXXXXSMIDFPKQKIXXXXXXXXXXX 351
++ QR + + F+DD S+ +
Sbjct: 146 EIEQRLIKECHIPVFHDDQHGTAIVVLAAIFNSLKLLKKSLDEV------SIVVNGGGSA 199
Query: 352 XXXXXRKTMARMLGNNESAFDSARSQFWVVDAKGLITE-DRENIDPDAKPFARKVNEISR 410
RK +A + ++ VVD G+I E + + P A+ N +
Sbjct: 200 GLSITRKLLA-----------AGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFK 248
Query: 411 QGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAE 470
G E A +E D+ +G+SA G+ E + M + RP IFAM+NP E
Sbjct: 249 SGTLEDA--LE-----GADIFIGVSA-PGVLKAEWISKM----AARPVIFAMANPI--PE 294
Query: 471 CTPEEAFSIVGDNIIFASGSPFKDVDLGNGHIGHCNQGNNMYLFPGVGLGTLLSGSRIIS 530
P+EA G I+ G G NQ NN+ FPG+ G L + ++ I+
Sbjct: 295 IYPDEALE-AGAYIV------------GTGRSDFPNQINNVLAFPGIFRGALDARAKTIT 341
Query: 531 DGMLQAAAECLAEYMTEEEVVKGKIYP 557
M AAA+ +A + ++ + I P
Sbjct: 342 VEMQIAAAKGIASLVPDDALSTTNIIP 368
>pdb|3NV9|A Chain A, Crystal Structure Of Entamoeba Histolytica Malic Enzyme
pdb|3NV9|B Chain B, Crystal Structure Of Entamoeba Histolytica Malic Enzyme
Length = 487
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 72/164 (43%), Gaps = 23/164 (14%)
Query: 382 DAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVG-GL 440
D+KG + RE+I D + F RK + S+ E V DVL+ LS G G+
Sbjct: 252 DSKGSLHNGREDIKKDTR-FYRKWEICETTNPSKFGSIAEAC--VGADVLISLSTPGPGV 308
Query: 441 FSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGSPFKDVDLGNG 500
E +++M +P +F +NP E P EA G I+ F
Sbjct: 309 VKAEWIKSM----GEKPIVFCCANPV--PEIYPYEAKE-AGAYIVATGRGDFP------- 354
Query: 501 HIGHCNQGNNMYLFPGVGLGTLLSGSRIISDGMLQAAAECLAEY 544
NQ NN FPG+ G L+ +R I+D M AA+ LAE+
Sbjct: 355 -----NQVNNSVGFPGILKGALIVRARKITDNMAIAASRALAEF 393
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 11/128 (8%)
Query: 124 ETMYYKVLIANIEEY--APIVYTPTVGLVCQNYSGLFRRPRGMYFSAEDRGEM-KSMVYN 180
+T +YK L + ++ I P L N+ + P S R S+ Y+
Sbjct: 28 KTQFYKELAEKVHKFYKGKIQIMPKCTLAGFNWFNAYYTPGVSRISTNIRDNNDSSLFYS 87
Query: 181 WPAEQVDMIVVTDGSRILGLGDLGVQ-GIGIAVGKLDLYVAAAGINPQRVLPIMIDVGTT 239
V VV+D +R+LG GD+ G+G+ GK L GI+ +PI ID +
Sbjct: 88 LRGNFVG--VVSDSTRVLGDGDVTPPGGLGVMEGKALLMKYLGGID---AVPICID--SK 140
Query: 240 NEKLLKDP 247
N++ DP
Sbjct: 141 NKEGKNDP 148
>pdb|2DVM|A Chain A, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|B Chain B, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|C Chain C, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|D Chain D, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
Length = 439
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 53/107 (49%), Gaps = 22/107 (20%)
Query: 129 KVLIANIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAEDRGEMKSMVYNWPAEQVDM 188
KV + + EE + YTP V C+ A D G+ VY + ++ +
Sbjct: 25 KVSLESREELT-LAYTPGVAEPCKEI-------------ARDPGK----VYEYTSKGNLV 66
Query: 189 IVVTDGSRILGLGDLG-VQGIGIAVGKLDLYVAAAGINPQRVLPIMI 234
VV+DGSRILGLG++G + G+ + GK L+ G++ PIMI
Sbjct: 67 AVVSDGSRILGLGNIGPLAGLPVMEGKALLFKRFGGVD---AFPIMI 110
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 20/106 (18%)
Query: 429 DVLLGLSAVG-GLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFA 487
DVL+ + G G+ + +E M +F ++NP E PEEA G I+
Sbjct: 265 DVLISFTRPGPGVIKPQWIEKMNEDA----IVFPLANPV--PEILPEEAKK-AGARIV-- 315
Query: 488 SGSPFKDVDLGNGHIGHCNQGNNMYLFPGVGLGTLLSGSRIISDGM 533
G + NQ NN+ FPG+ G L +R I+D M
Sbjct: 316 ----------ATGRSDYPNQINNLLGFPGIFRGALDVRARTITDSM 351
>pdb|2HAE|A Chain A, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|B Chain B, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|C Chain C, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|D Chain D, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
Length = 386
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 88/364 (24%), Positives = 131/364 (35%), Gaps = 91/364 (25%)
Query: 190 VVTDGSRILGLGDLGVQG-IGIAVGKLDLYVAAAGINPQRVLPIMIDVGTTNEKLLKDPL 248
VV+DGS +LGLG++G G + + GK L+ A A I D
Sbjct: 64 VVSDGSAVLGLGNIGPYGALPVMEGKAFLFKAFADI---------------------DAF 102
Query: 249 YLGLQEHRLDGDEYVSVIDEFMEAIFTRWPNVIVQFEDFQSKWAFKLLQRYRYKYRM--F 306
+ L E +E + I + +E F + ED + F++LQR + + F
Sbjct: 103 PICLSESE---EEKIISIVKSLEPSFGG-----INLEDIGAPKCFRILQRLSEEMNIPVF 154
Query: 307 NDDXXXXXXXXXXXXXXXXXXXXXSMIDFPKQKIXXXXXXXXXXXXXXXXRKTMARMLGN 366
+DD + + ++KI G
Sbjct: 155 HDDQQGTAVVVSAAFL--------NALKLTEKKIEEVKVVVNGIGAA-----------GY 195
Query: 367 NESAF--DSARSQFWVVDAKGLITEDRENIDPDAK------PFARKVNEISRQGLWEGAS 418
N F D VD KG++ E+ DP+ AR N G E A
Sbjct: 196 NIVKFLLDLGVKNVVAVDRKGILNEN----DPETCLNEYHLEIARITNPERLSGDLETA- 250
Query: 419 LVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFS 478
D +G+S G + E ++ M S +P IFA++NP E PE A
Sbjct: 251 ------LEGADFFIGVSR-GNILKPEWIKKM----SRKPVIFALANPV--PEIDPELARE 297
Query: 479 IVGDNIIFASGSPFKDVDLGNGHIGHCNQGNNMYLFPGVGLGTLLSGSRIISDGMLQAAA 538
G I+ G H NQ NN+ FPG+ G + S+ I+ ML +A
Sbjct: 298 -AGAFIV------------ATGRSDHPNQVNNLLAFPGIMKGAVEKRSK-ITKNMLLSAV 343
Query: 539 ECLA 542
E +A
Sbjct: 344 EAIA 347
>pdb|1WW8|A Chain A, Crystal Structure Of Malic Enzyme From Pyrococcus
Horikoshii Ot3
pdb|1WW8|B Chain B, Crystal Structure Of Malic Enzyme From Pyrococcus
Horikoshii Ot3
Length = 439
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 22/107 (20%)
Query: 129 KVLIANIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAEDRGEMKSMVYNWPAEQVDM 188
KV + + EE + YTP V C+ A D G+ VY + ++ +
Sbjct: 25 KVSLESREELT-LAYTPGVAEPCKEI-------------ARDPGK----VYEYTSKGNLV 66
Query: 189 IVVTDGSRILGLGDLG-VQGIGIAVGKLDLYVAAAGINPQRVLPIMI 234
VV+DGSRILGLG++G + G+ + GK L+ G++ PI I
Sbjct: 67 AVVSDGSRILGLGNIGPLAGLPVXEGKALLFKRFGGVD---AFPIXI 110
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 15/73 (20%)
Query: 459 IFAMSNPTNNAECTPEEAFSIVGDNIIFASGSPFKDVDLGNGHIGHCNQGNNMYLFPGVG 518
+F ++NP E PEEA G I+ G + NQ NN+ FPG+
Sbjct: 292 VFPLANPV--PEILPEEAKK-AGARIV------------ATGRSDYPNQINNLLGFPGIF 336
Query: 519 LGTLLSGSRIISD 531
G L +R I+D
Sbjct: 337 RGALDVRARTITD 349
>pdb|1VL6|A Chain A, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|B Chain B, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|C Chain C, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|D Chain D, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
Length = 388
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 15/83 (18%)
Query: 454 STRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGSPFKDVDLGNGHIGHCNQGNNMYL 513
S +P IFA++NP E PE A G I+ G H NQ NN+
Sbjct: 285 SRKPVIFALANPV--PEIDPELARE-AGAFIV------------ATGRSDHPNQVNNLLA 329
Query: 514 FPGVGLGTLLSGSRIISDGMLQA 536
FPG+ G + S+I + +L A
Sbjct: 330 FPGIXKGAVEKRSKITKNXLLSA 352
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 32/123 (26%)
Query: 190 VVTDGSRILGLGDLGVQG-IGIAVGKLDLYVAAAGINPQRVLPIMIDVGTTNEKLLKDPL 248
VV+DGS +LGLG++G G + + GK L+ A A I D
Sbjct: 74 VVSDGSAVLGLGNIGPYGALPVXEGKAFLFKAFADI---------------------DAF 112
Query: 249 YLGLQEHRLDGDEYVSVIDEFMEAIFTRWPNVIVQFEDFQSKWAFKLLQRYRYKYRM--F 306
+ L E +E + I + +E F + ED + F++LQR + + F
Sbjct: 113 PICLSESE---EEKIISIVKSLEPSFGG-----INLEDIGAPKCFRILQRLSEEXNIPVF 164
Query: 307 NDD 309
+DD
Sbjct: 165 HDD 167
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 362 RMLGNNESAFDSARSQFW--VVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASL 419
R L N+ +FD+A + W +++ + D +DP + + E W ASL
Sbjct: 206 RFLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPLDPGV--LRQLIGERGADSAWLTASL 263
Query: 420 VEVVQQVKPDVLLGL 434
+ + PD L GL
Sbjct: 264 FNTLVDLDPDCLGGL 278
>pdb|2B2C|A Chain A, Cloning, Expression, Characterisation And Three-
Dimensional Structure Determination Of The
Caenorhabditis Elegans Spermidine Synthase
pdb|2B2C|B Chain B, Cloning, Expression, Characterisation And Three-
Dimensional Structure Determination Of The
Caenorhabditis Elegans Spermidine Synthase
Length = 314
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 441 FSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGSPFKDV 495
FS + LE M G++ P S+ P +AFS+ ++F S ++DV
Sbjct: 12 FSPDDLEKMNGASDEEPTKVLKSDGQEMGGAWPGQAFSLQVKKVLFHEKSKYQDV 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,559,714
Number of Sequences: 62578
Number of extensions: 656182
Number of successful extensions: 1540
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1479
Number of HSP's gapped (non-prelim): 33
length of query: 623
length of database: 14,973,337
effective HSP length: 105
effective length of query: 518
effective length of database: 8,402,647
effective search space: 4352571146
effective search space used: 4352571146
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)