Query 040403
Match_columns 623
No_of_seqs 200 out of 1372
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 08:05:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040403.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040403hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1257 NADP+-dependent malic 100.0 9E-213 2E-217 1687.3 44.5 544 39-619 24-569 (582)
2 PRK13529 malate dehydrogenase; 100.0 2E-209 5E-214 1695.7 51.5 554 37-620 8-562 (563)
3 PTZ00317 NADP-dependent malic 100.0 1E-205 3E-210 1665.6 49.6 546 40-614 13-559 (559)
4 PLN03129 NADP-dependent malic 100.0 8E-205 2E-209 1664.9 50.0 541 43-619 39-581 (581)
5 COG0281 SfcA Malic enzyme [Ene 100.0 4E-118 9E-123 944.7 37.1 427 79-618 1-431 (432)
6 PRK12862 malic enzyme; Reviewe 100.0 6E-109 1E-113 939.7 34.6 368 122-584 26-412 (763)
7 PRK12861 malic enzyme; Reviewe 100.0 1E-108 2E-113 933.1 34.1 369 122-584 22-408 (764)
8 PRK07232 bifunctional malic en 100.0 1E-107 3E-112 924.1 34.7 368 122-584 18-404 (752)
9 cd05312 NAD_bind_1_malic_enz N 100.0 2.2E-97 5E-102 760.1 28.5 279 310-613 1-279 (279)
10 PF03949 Malic_M: Malic enzyme 100.0 9.6E-95 2.1E-99 732.7 18.3 255 310-578 1-255 (255)
11 cd00762 NAD_bind_malic_enz NAD 100.0 2.3E-91 5.1E-96 707.3 25.0 254 310-577 1-254 (254)
12 PF00390 malic: Malic enzyme, 100.0 1.5E-82 3.3E-87 614.6 8.4 181 120-300 1-182 (182)
13 cd05311 NAD_bind_2_malic_enz N 100.0 6.7E-57 1.4E-61 449.7 23.5 225 310-577 1-226 (226)
14 cd05191 NAD_bind_amino_acid_DH 98.7 1.2E-07 2.6E-12 81.5 11.6 86 312-463 1-86 (86)
15 PRK05476 S-adenosyl-L-homocyst 97.7 0.0012 2.6E-08 73.1 17.5 120 302-466 173-302 (425)
16 cd00401 AdoHcyase S-adenosyl-L 97.7 0.00086 1.9E-08 73.9 16.0 130 302-478 163-302 (413)
17 TIGR00936 ahcY adenosylhomocys 97.4 0.0031 6.8E-08 69.4 14.8 129 302-477 156-294 (406)
18 PLN02494 adenosylhomocysteinas 97.2 0.007 1.5E-07 67.9 15.1 125 308-479 231-355 (477)
19 PLN02477 glutamate dehydrogena 97.0 0.036 7.8E-07 61.3 18.0 193 257-478 112-324 (410)
20 TIGR01035 hemA glutamyl-tRNA r 96.9 0.0086 1.9E-07 65.9 12.6 126 311-474 158-285 (417)
21 cd05211 NAD_bind_Glu_Leu_Phe_V 96.9 0.016 3.4E-07 58.7 12.7 138 313-479 2-141 (217)
22 PF00670 AdoHcyase_NAD: S-aden 96.7 0.043 9.4E-07 53.7 14.0 122 311-479 3-124 (162)
23 TIGR02853 spore_dpaA dipicolin 96.7 0.024 5.2E-07 59.6 12.9 138 310-491 127-265 (287)
24 PRK14982 acyl-ACP reductase; P 96.7 0.01 2.3E-07 64.0 10.3 129 279-467 119-250 (340)
25 PRK00045 hemA glutamyl-tRNA re 96.7 0.016 3.6E-07 63.7 12.1 120 312-466 161-283 (423)
26 PF01488 Shikimate_DH: Shikima 96.6 0.0055 1.2E-07 57.0 7.1 102 335-467 10-113 (135)
27 PTZ00075 Adenosylhomocysteinas 96.5 0.059 1.3E-06 60.7 15.5 122 302-465 215-343 (476)
28 cd05213 NAD_bind_Glutamyl_tRNA 96.5 0.026 5.7E-07 59.6 11.9 137 290-466 139-276 (311)
29 PRK08306 dipicolinate synthase 96.5 0.039 8.5E-07 58.1 12.8 128 320-491 138-266 (296)
30 cd01076 NAD_bind_1_Glu_DH NAD( 96.4 0.038 8.1E-07 56.4 12.0 131 311-466 8-140 (227)
31 PRK14031 glutamate dehydrogena 96.3 0.26 5.7E-06 55.2 18.5 188 257-466 134-347 (444)
32 PRK14192 bifunctional 5,10-met 96.2 0.028 6.1E-07 59.2 10.3 153 267-478 77-250 (283)
33 PTZ00079 NADP-specific glutama 96.1 0.5 1.1E-05 53.2 19.6 188 257-467 143-358 (454)
34 PRK08293 3-hydroxybutyryl-CoA 95.9 0.33 7.2E-06 50.4 16.3 191 338-584 4-213 (287)
35 PRK09414 glutamate dehydrogena 95.9 0.26 5.7E-06 55.2 16.1 196 257-478 138-357 (445)
36 cd01080 NAD_bind_m-THF_DH_Cycl 95.8 0.089 1.9E-06 51.5 10.9 85 324-466 34-119 (168)
37 PRK14030 glutamate dehydrogena 95.8 0.47 1E-05 53.3 17.6 197 257-478 134-357 (445)
38 cd05313 NAD_bind_2_Glu_DH NAD( 95.6 0.32 6.9E-06 50.8 14.5 134 312-467 16-159 (254)
39 PLN00203 glutamyl-tRNA reducta 95.5 0.095 2.1E-06 59.7 11.3 142 290-466 225-372 (519)
40 cd01075 NAD_bind_Leu_Phe_Val_D 95.4 0.28 6E-06 48.9 12.9 123 312-478 4-129 (200)
41 PLN00106 malate dehydrogenase 95.2 0.056 1.2E-06 58.0 7.9 132 319-479 4-152 (323)
42 PRK12549 shikimate 5-dehydroge 95.1 0.11 2.4E-06 54.5 9.5 90 319-437 112-202 (284)
43 PRK14175 bifunctional 5,10-met 95.0 0.094 2E-06 55.6 8.6 129 267-447 76-221 (286)
44 cd01065 NAD_bind_Shikimate_DH 94.8 0.19 4.1E-06 46.5 9.1 112 319-466 4-120 (155)
45 COG0373 HemA Glutamyl-tRNA red 94.7 0.24 5.2E-06 55.1 11.1 216 290-580 139-360 (414)
46 TIGR00518 alaDH alanine dehydr 94.6 0.32 6.9E-06 53.0 11.7 99 335-464 165-268 (370)
47 PRK09260 3-hydroxybutyryl-CoA 94.6 0.35 7.6E-06 50.2 11.4 132 338-497 2-146 (288)
48 PF03807 F420_oxidored: NADP o 94.5 0.061 1.3E-06 46.2 4.7 94 339-465 1-96 (96)
49 cd05197 GH4_glycoside_hydrolas 94.4 0.071 1.5E-06 59.2 6.3 130 338-489 1-166 (425)
50 PRK09424 pntA NAD(P) transhydr 94.1 0.57 1.2E-05 53.4 12.8 43 427-473 248-296 (509)
51 PRK14191 bifunctional 5,10-met 94.0 0.62 1.4E-05 49.5 12.0 130 267-447 75-220 (285)
52 TIGR01809 Shik-DH-AROM shikima 93.5 0.41 8.9E-06 50.1 9.6 105 303-446 100-209 (282)
53 PRK13940 glutamyl-tRNA reducta 93.5 0.38 8.2E-06 53.4 9.7 131 290-466 142-276 (414)
54 PRK06223 malate dehydrogenase; 93.4 0.38 8.2E-06 50.3 9.1 128 338-493 3-148 (307)
55 PRK06035 3-hydroxyacyl-CoA deh 93.4 6.5 0.00014 40.9 18.1 32 338-384 4-35 (291)
56 PRK06129 3-hydroxyacyl-CoA deh 93.3 0.6 1.3E-05 49.1 10.4 38 503-540 184-221 (308)
57 cd01078 NAD_bind_H4MPT_DH NADP 93.3 0.3 6.4E-06 47.6 7.6 54 313-384 7-61 (194)
58 TIGR00561 pntA NAD(P) transhyd 93.3 1.3 2.7E-05 50.8 13.5 133 309-464 134-285 (511)
59 cd05296 GH4_P_beta_glucosidase 93.2 0.13 2.9E-06 56.9 5.7 130 338-489 1-166 (419)
60 cd00650 LDH_MDH_like NAD-depen 93.2 0.32 7E-06 49.9 8.1 128 340-490 1-145 (263)
61 TIGR02354 thiF_fam2 thiamine b 93.2 0.12 2.6E-06 51.7 4.7 36 335-384 19-54 (200)
62 PRK00676 hemA glutamyl-tRNA re 93.1 0.79 1.7E-05 49.8 11.2 124 290-467 136-265 (338)
63 PRK11880 pyrroline-5-carboxyla 93.0 2.4 5.1E-05 43.2 13.9 120 338-497 3-123 (267)
64 PRK07531 bifunctional 3-hydrox 92.9 2.8 6E-05 47.4 15.5 129 338-497 5-145 (495)
65 cd05212 NAD_bind_m-THF_DH_Cycl 92.8 0.92 2E-05 43.3 9.8 83 315-448 9-92 (140)
66 PTZ00117 malate dehydrogenase; 92.7 0.3 6.5E-06 52.1 7.2 128 336-490 4-148 (319)
67 PRK08328 hypothetical protein; 92.6 0.085 1.8E-06 53.7 2.8 122 296-466 7-130 (231)
68 PRK07066 3-hydroxybutyryl-CoA 92.4 2.3 5.1E-05 45.7 13.6 196 338-584 8-212 (321)
69 PRK06130 3-hydroxybutyryl-CoA 92.4 5.5 0.00012 41.6 16.0 130 338-496 5-143 (311)
70 PRK00257 erythronate-4-phospha 92.2 1.5 3.3E-05 48.3 12.0 106 313-464 95-208 (381)
71 PTZ00082 L-lactate dehydrogena 92.2 0.32 6.9E-06 52.0 6.7 129 335-490 4-154 (321)
72 PRK10792 bifunctional 5,10-met 92.2 0.54 1.2E-05 50.0 8.2 84 313-447 138-222 (285)
73 PRK14176 bifunctional 5,10-met 92.2 0.6 1.3E-05 49.7 8.6 130 267-447 82-227 (287)
74 PTZ00325 malate dehydrogenase; 92.0 0.43 9.2E-06 51.3 7.4 108 335-466 6-128 (321)
75 PRK12749 quinate/shikimate deh 91.8 0.38 8.2E-06 50.7 6.6 49 319-384 109-157 (288)
76 PRK12548 shikimate 5-dehydroge 91.6 0.48 1E-05 49.7 7.1 58 302-384 102-159 (289)
77 PRK00066 ldh L-lactate dehydro 91.6 0.72 1.6E-05 49.2 8.5 127 337-491 6-149 (315)
78 PRK14194 bifunctional 5,10-met 91.3 0.82 1.8E-05 49.0 8.5 139 267-463 77-231 (301)
79 PRK14027 quinate/shikimate deh 91.2 0.46 9.9E-06 50.1 6.4 48 320-384 113-160 (283)
80 PRK14189 bifunctional 5,10-met 91.0 0.86 1.9E-05 48.5 8.3 130 267-447 76-221 (285)
81 PRK15438 erythronate-4-phospha 91.0 2 4.4E-05 47.3 11.4 116 312-477 94-217 (378)
82 cd01079 NAD_bind_m-THF_DH NAD 91.0 1.5 3.2E-05 44.5 9.4 103 316-448 35-148 (197)
83 PRK14166 bifunctional 5,10-met 91.0 1.2 2.7E-05 47.2 9.4 131 267-448 74-221 (282)
84 cd05291 HicDH_like L-2-hydroxy 90.9 0.52 1.1E-05 49.7 6.6 126 339-491 2-144 (306)
85 TIGR02356 adenyl_thiF thiazole 90.6 0.89 1.9E-05 45.3 7.6 36 335-384 19-54 (202)
86 PRK14183 bifunctional 5,10-met 90.6 1 2.2E-05 47.9 8.3 130 267-448 75-221 (281)
87 PRK08223 hypothetical protein; 90.5 0.64 1.4E-05 49.4 6.8 135 293-465 4-154 (287)
88 PF02826 2-Hacid_dh_C: D-isome 90.5 1.9 4E-05 41.9 9.5 98 326-465 28-129 (178)
89 PRK05086 malate dehydrogenase; 90.5 0.82 1.8E-05 48.7 7.6 105 338-466 1-121 (312)
90 PLN02928 oxidoreductase family 90.4 3 6.6E-05 45.1 12.0 123 312-465 121-264 (347)
91 PRK14178 bifunctional 5,10-met 90.2 0.89 1.9E-05 48.2 7.5 129 267-447 70-215 (279)
92 cd00755 YgdL_like Family of ac 90.1 0.41 8.8E-06 49.2 4.7 127 335-490 9-135 (231)
93 PRK07634 pyrroline-5-carboxyla 90.0 1.5 3.3E-05 43.9 8.7 125 336-497 3-128 (245)
94 PRK14190 bifunctional 5,10-met 89.9 1.2 2.6E-05 47.3 8.3 84 313-447 137-221 (284)
95 PRK08605 D-lactate dehydrogena 89.8 3.2 7E-05 44.5 11.5 92 335-466 144-239 (332)
96 PRK07680 late competence prote 89.7 1.2 2.6E-05 45.9 7.9 98 339-467 2-100 (273)
97 PRK14174 bifunctional 5,10-met 89.7 3.7 8E-05 44.0 11.6 134 267-447 75-226 (295)
98 COG0334 GdhA Glutamate dehydro 89.4 15 0.00033 41.2 16.4 195 255-478 110-325 (411)
99 PRK00258 aroE shikimate 5-dehy 89.3 0.91 2E-05 47.2 6.7 49 319-384 107-156 (278)
100 PRK14619 NAD(P)H-dependent gly 89.2 2.9 6.3E-05 44.0 10.5 33 337-384 4-36 (308)
101 COG0169 AroE Shikimate 5-dehyd 89.2 0.84 1.8E-05 48.4 6.4 50 320-384 110-159 (283)
102 PF02882 THF_DHG_CYH_C: Tetrah 89.1 1.9 4.2E-05 42.1 8.4 84 314-448 16-100 (160)
103 PF00056 Ldh_1_N: lactate/mala 89.0 0.099 2.1E-06 49.3 -0.6 115 338-479 1-131 (141)
104 PF00899 ThiF: ThiF family; I 89.0 0.66 1.4E-05 42.8 4.9 37 336-386 1-37 (135)
105 PRK14172 bifunctional 5,10-met 89.0 4.2 9E-05 43.3 11.3 130 267-448 76-222 (278)
106 PRK08762 molybdopterin biosynt 89.0 0.87 1.9E-05 49.5 6.5 108 335-462 133-257 (376)
107 PRK01710 murD UDP-N-acetylmura 88.8 2.2 4.9E-05 47.3 9.7 119 335-504 12-131 (458)
108 PF01210 NAD_Gly3P_dh_N: NAD-d 88.6 1.4 3E-05 41.9 7.0 89 339-452 1-91 (157)
109 PRK08374 homoserine dehydrogen 88.5 3.1 6.8E-05 44.8 10.3 111 338-460 3-120 (336)
110 PF00208 ELFV_dehydrog: Glutam 88.4 2.6 5.7E-05 43.6 9.3 138 308-466 5-151 (244)
111 PLN02602 lactate dehydrogenase 88.3 0.68 1.5E-05 50.3 5.2 126 338-491 38-181 (350)
112 PRK14179 bifunctional 5,10-met 88.3 1.9 4E-05 46.0 8.2 130 267-447 76-221 (284)
113 PRK14177 bifunctional 5,10-met 88.2 2.1 4.5E-05 45.6 8.5 83 315-448 140-223 (284)
114 PRK15076 alpha-galactosidase; 88.2 0.56 1.2E-05 52.2 4.5 133 338-493 2-174 (431)
115 cd05293 LDH_1 A subgroup of L- 88.1 0.79 1.7E-05 48.9 5.4 127 337-491 3-147 (312)
116 PRK08410 2-hydroxyacid dehydro 87.5 16 0.00036 38.9 14.9 162 276-485 60-252 (311)
117 PRK14618 NAD(P)H-dependent gly 87.5 2.4 5.3E-05 44.7 8.6 96 338-466 5-107 (328)
118 PRK14184 bifunctional 5,10-met 87.5 4.5 9.8E-05 43.2 10.5 134 267-447 75-224 (286)
119 COG0345 ProC Pyrroline-5-carbo 87.3 5.2 0.00011 42.2 10.8 106 338-481 2-108 (266)
120 cd01339 LDH-like_MDH L-lactate 87.2 2.1 4.6E-05 44.9 8.0 124 340-491 1-142 (300)
121 PRK14170 bifunctional 5,10-met 87.2 6.4 0.00014 42.0 11.5 130 267-448 75-221 (284)
122 PRK14106 murD UDP-N-acetylmura 87.2 2.9 6.3E-05 45.8 9.2 35 335-384 3-37 (450)
123 PRK05808 3-hydroxybutyryl-CoA 87.2 19 0.00041 37.3 14.7 32 338-384 4-35 (282)
124 TIGR01763 MalateDH_bact malate 87.1 0.93 2E-05 48.1 5.2 124 338-490 2-144 (305)
125 PRK14168 bifunctional 5,10-met 87.1 2.7 5.8E-05 45.0 8.6 90 312-448 139-229 (297)
126 PRK15116 sulfur acceptor prote 86.9 1.7 3.7E-05 45.8 6.9 108 335-468 28-135 (268)
127 PRK14181 bifunctional 5,10-met 86.6 8.7 0.00019 41.1 12.0 135 267-448 70-221 (287)
128 PRK12550 shikimate 5-dehydroge 86.5 1.5 3.4E-05 45.9 6.4 47 320-384 109-155 (272)
129 PRK14187 bifunctional 5,10-met 86.5 3 6.6E-05 44.6 8.6 131 267-448 76-224 (294)
130 TIGR00872 gnd_rel 6-phosphoglu 86.5 5.9 0.00013 41.6 10.7 100 339-474 2-102 (298)
131 TIGR01758 MDH_euk_cyt malate d 86.4 3 6.5E-05 44.8 8.6 135 339-495 1-156 (324)
132 TIGR01915 npdG NADPH-dependent 86.0 4.9 0.00011 40.2 9.5 100 339-468 2-106 (219)
133 PF01262 AlaDh_PNT_C: Alanine 85.9 1.4 3E-05 42.4 5.4 94 335-449 18-129 (168)
134 cd05297 GH4_alpha_glucosidase_ 85.7 0.81 1.8E-05 50.7 4.1 128 339-489 2-167 (423)
135 COG0578 GlpA Glycerol-3-phosph 85.7 7.8 0.00017 44.7 11.9 161 336-582 11-179 (532)
136 PRK07679 pyrroline-5-carboxyla 85.7 5.8 0.00013 41.1 10.1 99 337-466 3-102 (279)
137 PRK14185 bifunctional 5,10-met 85.4 3.9 8.4E-05 43.8 8.7 135 267-448 75-225 (293)
138 PRK06141 ornithine cyclodeamin 85.3 11 0.00024 40.0 12.2 108 336-475 124-232 (314)
139 PLN02516 methylenetetrahydrofo 85.2 3.7 7.9E-05 44.1 8.5 131 267-448 83-231 (299)
140 PRK14193 bifunctional 5,10-met 85.2 3.6 7.7E-05 43.9 8.3 132 267-448 76-224 (284)
141 PTZ00345 glycerol-3-phosphate 85.2 1.7 3.8E-05 47.5 6.2 24 336-359 10-33 (365)
142 PRK14169 bifunctional 5,10-met 85.1 11 0.00025 40.1 12.0 131 267-448 74-220 (282)
143 PRK14171 bifunctional 5,10-met 85.1 3.8 8.3E-05 43.7 8.5 131 267-448 76-223 (288)
144 PRK06928 pyrroline-5-carboxyla 84.9 6.5 0.00014 40.9 10.0 99 338-466 2-101 (277)
145 PRK14851 hypothetical protein; 84.7 4.6 0.0001 47.8 9.7 128 335-482 41-194 (679)
146 PRK14188 bifunctional 5,10-met 84.6 3.3 7.1E-05 44.3 7.8 81 314-445 138-219 (296)
147 PRK08644 thiamine biosynthesis 84.6 1.2 2.6E-05 45.0 4.3 36 335-384 26-61 (212)
148 PRK12480 D-lactate dehydrogena 84.6 8.8 0.00019 41.4 11.1 111 312-464 105-235 (330)
149 PRK00094 gpsA NAD(P)H-dependen 84.5 2.7 6E-05 43.6 7.1 99 339-467 3-109 (325)
150 PRK06476 pyrroline-5-carboxyla 84.5 17 0.00037 37.0 12.7 96 339-467 2-97 (258)
151 PRK13243 glyoxylate reductase; 84.3 9.5 0.0002 41.1 11.2 197 277-519 65-291 (333)
152 PRK14182 bifunctional 5,10-met 84.3 4.5 9.8E-05 43.1 8.6 130 267-448 74-221 (282)
153 COG0111 SerA Phosphoglycerate 84.2 7.6 0.00017 41.9 10.5 109 303-449 90-223 (324)
154 PRK14173 bifunctional 5,10-met 84.2 4.4 9.5E-05 43.3 8.5 131 267-448 73-219 (287)
155 PRK14167 bifunctional 5,10-met 83.9 15 0.00033 39.5 12.4 135 267-448 75-225 (297)
156 PRK06153 hypothetical protein; 83.8 1.5 3.2E-05 48.6 5.0 104 335-466 174-278 (393)
157 PF01113 DapB_N: Dihydrodipico 83.8 1.5 3.3E-05 40.3 4.4 34 339-385 2-36 (124)
158 TIGR01408 Ube1 ubiquitin-activ 83.8 0.55 1.2E-05 57.6 1.8 41 335-384 417-457 (1008)
159 cd00704 MDH Malate dehydrogena 83.8 3.3 7.1E-05 44.6 7.4 119 339-479 2-139 (323)
160 PLN02545 3-hydroxybutyryl-CoA 83.8 43 0.00092 34.9 15.5 32 338-384 5-36 (295)
161 PRK14180 bifunctional 5,10-met 83.7 4.7 0.0001 42.9 8.4 130 267-447 75-221 (282)
162 cd05298 GH4_GlvA_pagL_like Gly 83.6 1.7 3.7E-05 48.7 5.4 135 338-493 1-171 (437)
163 PRK12921 2-dehydropantoate 2-r 83.5 2.8 6.1E-05 43.2 6.7 105 339-467 2-106 (305)
164 PRK09599 6-phosphogluconate de 83.5 5.8 0.00013 41.6 9.1 95 339-466 2-97 (301)
165 PRK06522 2-dehydropantoate 2-r 83.2 6.6 0.00014 40.3 9.2 103 339-467 2-104 (304)
166 cd01337 MDH_glyoxysomal_mitoch 83.2 2.3 4.9E-05 45.6 5.9 104 339-466 2-120 (310)
167 PRK12490 6-phosphogluconate de 83.1 6.2 0.00013 41.4 9.1 95 339-466 2-97 (299)
168 COG5322 Predicted dehydrogenas 83.1 7.1 0.00015 41.9 9.3 45 311-358 144-189 (351)
169 cd01336 MDH_cytoplasmic_cytoso 82.9 5.8 0.00013 42.6 8.9 133 338-492 3-156 (325)
170 PRK12475 thiamine/molybdopteri 82.8 1.4 3.1E-05 47.6 4.3 105 335-461 22-147 (338)
171 PLN02616 tetrahydrofolate dehy 82.8 4.8 0.0001 44.3 8.3 85 313-448 210-295 (364)
172 PLN02897 tetrahydrofolate dehy 82.7 13 0.00028 40.8 11.5 131 267-448 130-278 (345)
173 TIGR02355 moeB molybdopterin s 82.7 1.6 3.5E-05 44.8 4.4 36 335-384 22-57 (240)
174 cd00757 ThiF_MoeB_HesA_family 82.6 1.7 3.7E-05 43.9 4.5 36 335-384 19-54 (228)
175 PRK06436 glycerate dehydrogena 82.4 11 0.00024 40.3 10.7 89 335-466 120-212 (303)
176 PRK02842 light-independent pro 82.4 13 0.00029 41.2 11.7 41 321-368 277-317 (427)
177 PRK08291 ectoine utilization p 82.4 18 0.00038 38.8 12.3 107 336-475 131-240 (330)
178 COG1486 CelF Alpha-galactosida 82.1 1.1 2.3E-05 50.4 3.1 132 336-488 2-169 (442)
179 TIGR01381 E1_like_apg7 E1-like 82.1 1.7 3.6E-05 51.1 4.7 78 335-432 336-413 (664)
180 KOG0029 Amine oxidase [Seconda 82.1 1.1 2.4E-05 51.0 3.2 36 336-377 14-49 (501)
181 PRK05600 thiamine biosynthesis 81.9 1.5 3.2E-05 48.0 4.1 126 296-461 19-162 (370)
182 TIGR02992 ectoine_eutC ectoine 81.8 13 0.00029 39.7 11.1 107 337-475 129-237 (326)
183 PLN03139 formate dehydrogenase 81.8 52 0.0011 36.6 15.9 199 275-518 117-342 (386)
184 PRK05442 malate dehydrogenase; 81.6 4 8.8E-05 44.0 7.2 121 338-480 5-144 (326)
185 KOG0685 Flavin-containing amin 81.5 1.1 2.5E-05 50.6 3.0 38 335-377 19-56 (498)
186 TIGR00507 aroE shikimate 5-deh 81.2 3.6 7.9E-05 42.5 6.4 56 303-384 94-149 (270)
187 TIGR01772 MDH_euk_gproteo mala 80.7 4.9 0.00011 43.1 7.4 128 339-490 1-146 (312)
188 PRK09880 L-idonate 5-dehydroge 80.5 35 0.00075 35.9 13.6 97 322-449 159-256 (343)
189 PF07992 Pyr_redox_2: Pyridine 80.3 2.8 6E-05 39.8 4.9 31 339-384 1-31 (201)
190 PRK14186 bifunctional 5,10-met 80.1 7.8 0.00017 41.6 8.6 85 313-448 137-222 (297)
191 TIGR03366 HpnZ_proposed putati 80.0 29 0.00062 35.5 12.5 47 319-383 107-153 (280)
192 cd01487 E1_ThiF_like E1_ThiF_l 79.9 2.4 5.2E-05 41.4 4.4 32 339-384 1-32 (174)
193 TIGR03140 AhpF alkyl hydropero 79.8 3.9 8.5E-05 46.1 6.6 90 268-359 137-234 (515)
194 cd01485 E1-1_like Ubiquitin ac 79.7 2.2 4.9E-05 42.4 4.2 37 335-385 17-53 (198)
195 PRK05690 molybdopterin biosynt 79.7 2.6 5.7E-05 43.4 4.8 36 335-384 30-65 (245)
196 PRK09310 aroDE bifunctional 3- 79.3 3.9 8.5E-05 46.2 6.4 47 319-383 317-363 (477)
197 PRK06487 glycerate dehydrogena 79.3 44 0.00096 35.8 14.0 191 301-545 88-308 (317)
198 cd01483 E1_enzyme_family Super 79.3 2.7 5.9E-05 38.9 4.4 32 339-384 1-32 (143)
199 PLN02306 hydroxypyruvate reduc 79.1 27 0.00059 38.7 12.6 185 301-518 108-322 (386)
200 PLN02688 pyrroline-5-carboxyla 79.0 9 0.00019 39.0 8.4 95 339-466 2-98 (266)
201 PRK07574 formate dehydrogenase 78.8 27 0.00058 38.7 12.5 197 277-518 112-335 (385)
202 PRK06932 glycerate dehydrogena 78.5 20 0.00043 38.4 11.1 138 334-519 144-289 (314)
203 cd01491 Ube1_repeat1 Ubiquitin 78.4 2.4 5.2E-05 45.1 4.1 36 335-384 17-52 (286)
204 PRK02472 murD UDP-N-acetylmura 78.2 15 0.00033 40.3 10.4 35 335-384 3-37 (447)
205 cd00300 LDH_like L-lactate deh 78.1 2.9 6.3E-05 44.2 4.7 124 340-490 1-141 (300)
206 cd05292 LDH_2 A subgroup of L- 78.0 11 0.00023 40.1 8.9 126 339-492 2-144 (308)
207 PRK08229 2-dehydropantoate 2-r 77.8 10 0.00022 40.0 8.6 99 338-467 3-111 (341)
208 PRK07502 cyclohexadienyl dehyd 77.8 12 0.00026 39.3 9.1 35 337-384 6-40 (307)
209 PF02056 Glyco_hydro_4: Family 77.8 7.9 0.00017 38.8 7.3 114 339-472 1-151 (183)
210 TIGR02279 PaaC-3OHAcCoADH 3-hy 77.6 19 0.0004 41.2 11.1 37 503-539 185-221 (503)
211 PRK11790 D-3-phosphoglycerate 77.3 89 0.0019 34.8 16.0 220 275-547 71-318 (409)
212 PRK15317 alkyl hydroperoxide r 77.3 3.1 6.6E-05 47.0 4.8 87 271-359 139-233 (517)
213 PRK12439 NAD(P)H-dependent gly 77.2 2.5 5.4E-05 45.4 3.9 23 337-359 7-29 (341)
214 PRK10886 DnaA initiator-associ 76.9 9.3 0.0002 38.4 7.6 148 336-546 40-187 (196)
215 PF00070 Pyr_redox: Pyridine n 76.9 5.2 0.00011 33.5 5.0 35 339-388 1-35 (80)
216 TIGR02622 CDP_4_6_dhtase CDP-g 76.8 2.3 5E-05 44.8 3.4 106 335-463 2-127 (349)
217 COG0190 FolD 5,10-methylene-te 76.6 7.9 0.00017 41.4 7.3 132 266-448 73-220 (283)
218 cd01492 Aos1_SUMO Ubiquitin ac 76.6 2.8 6.1E-05 41.7 3.8 78 335-435 19-96 (197)
219 TIGR03376 glycerol3P_DH glycer 76.1 4.4 9.5E-05 44.0 5.4 21 339-359 1-21 (342)
220 COG0686 Ald Alanine dehydrogen 75.8 3.2 7E-05 45.1 4.2 110 335-475 166-290 (371)
221 TIGR01759 MalateDH-SF1 malate 75.6 10 0.00022 40.9 8.0 121 338-480 4-143 (323)
222 PRK07688 thiamine/molybdopteri 75.3 3.7 8.1E-05 44.4 4.6 36 335-384 22-57 (339)
223 PRK15469 ghrA bifunctional gly 75.1 33 0.00072 36.8 11.6 139 334-518 133-277 (312)
224 PRK05597 molybdopterin biosynt 75.0 3.8 8.3E-05 44.5 4.6 111 335-464 26-152 (355)
225 PRK12491 pyrroline-5-carboxyla 74.9 12 0.00026 39.2 8.0 35 338-383 3-37 (272)
226 PRK08268 3-hydroxy-acyl-CoA de 74.6 30 0.00066 39.5 11.8 97 426-538 112-222 (507)
227 PRK06270 homoserine dehydrogen 74.5 22 0.00049 38.3 10.2 112 338-460 3-123 (341)
228 PTZ00142 6-phosphogluconate de 74.4 12 0.00027 42.3 8.6 102 338-466 2-104 (470)
229 PRK12775 putative trifunctiona 74.3 20 0.00044 44.4 11.0 34 336-384 429-462 (1006)
230 cd01338 MDH_choloroplast_like 74.2 13 0.00028 40.0 8.3 120 338-480 3-142 (322)
231 KOG2337 Ubiquitin activating E 74.0 2.8 6.2E-05 48.0 3.4 40 335-388 338-377 (669)
232 cd05290 LDH_3 A subgroup of L- 73.8 18 0.00039 38.7 9.2 115 339-480 1-133 (307)
233 PF02737 3HCDH_N: 3-hydroxyacy 73.7 4.9 0.00011 39.4 4.6 98 339-461 1-111 (180)
234 cd05294 LDH-like_MDH_nadp A la 73.7 12 0.00026 39.9 7.8 126 338-490 1-147 (309)
235 PRK15409 bifunctional glyoxyla 73.0 29 0.00064 37.3 10.7 141 301-487 88-258 (323)
236 KOG2250 Glutamate/leucine/phen 72.5 36 0.00078 39.1 11.4 195 259-479 157-380 (514)
237 COG1063 Tdh Threonine dehydrog 72.4 15 0.00033 39.5 8.4 75 337-436 169-247 (350)
238 PF02423 OCD_Mu_crystall: Orni 72.3 21 0.00045 38.1 9.3 122 313-475 112-237 (313)
239 KOG0069 Glyoxylate/hydroxypyru 72.2 32 0.00069 37.7 10.7 114 312-464 120-254 (336)
240 COG0039 Mdh Malate/lactate deh 72.1 7.6 0.00016 42.0 5.9 106 338-466 1-121 (313)
241 COG0240 GpsA Glycerol-3-phosph 72.1 5.2 0.00011 43.5 4.7 33 338-383 2-34 (329)
242 cd08237 ribitol-5-phosphate_DH 71.7 67 0.0015 33.9 12.9 69 336-436 163-231 (341)
243 COG0499 SAM1 S-adenosylhomocys 71.7 19 0.00042 40.0 8.8 125 308-480 186-315 (420)
244 PRK07411 hypothetical protein; 71.5 4.7 0.0001 44.4 4.3 110 335-464 36-162 (390)
245 cd01979 Pchlide_reductase_N Pc 71.3 22 0.00048 39.0 9.5 37 324-368 266-302 (396)
246 PRK09754 phenylpropionate diox 71.0 8.5 0.00018 41.6 6.1 36 336-384 2-37 (396)
247 PRK07878 molybdopterin biosynt 70.8 4.9 0.00011 44.2 4.3 111 335-464 40-166 (392)
248 PRK07340 ornithine cyclodeamin 70.8 45 0.00097 35.5 11.3 74 336-436 124-197 (304)
249 PF13738 Pyr_redox_3: Pyridine 70.2 5 0.00011 38.3 3.7 30 341-384 1-30 (203)
250 PLN02520 bifunctional 3-dehydr 69.7 9.7 0.00021 43.6 6.5 35 335-384 377-411 (529)
251 TIGR01327 PGDH D-3-phosphoglyc 68.7 50 0.0011 37.9 11.9 217 277-546 60-302 (525)
252 cd01486 Apg7 Apg7 is an E1-lik 68.6 6.4 0.00014 42.5 4.5 32 339-384 1-32 (307)
253 PRK06719 precorrin-2 dehydroge 68.5 7.6 0.00016 37.5 4.6 26 334-359 10-35 (157)
254 cd01484 E1-2_like Ubiquitin ac 67.9 7 0.00015 40.3 4.4 106 339-463 1-124 (234)
255 cd01490 Ube1_repeat2 Ubiquitin 67.7 6 0.00013 44.5 4.2 37 339-384 1-37 (435)
256 TIGR00762 DegV EDD domain prot 67.7 16 0.00035 38.0 7.1 113 223-368 20-138 (275)
257 PRK06718 precorrin-2 dehydroge 67.4 7.9 0.00017 38.8 4.6 35 334-383 7-41 (202)
258 TIGR01470 cysG_Nterm siroheme 67.2 7.9 0.00017 38.9 4.6 36 334-384 6-41 (205)
259 PF03446 NAD_binding_2: NAD bi 67.1 10 0.00023 36.1 5.2 104 338-478 2-107 (163)
260 TIGR02371 ala_DH_arch alanine 66.6 96 0.0021 33.3 12.8 108 336-476 127-236 (325)
261 PRK13581 D-3-phosphoglycerate 66.4 1.2E+02 0.0026 34.9 14.3 218 277-548 62-305 (526)
262 PRK07231 fabG 3-ketoacyl-(acyl 65.6 38 0.00082 33.1 8.9 35 335-384 3-38 (251)
263 TIGR01771 L-LDH-NAD L-lactate 65.4 6.3 0.00014 41.9 3.7 123 342-491 1-140 (299)
264 PRK06046 alanine dehydrogenase 64.9 1E+02 0.0023 33.0 12.7 108 336-476 128-237 (326)
265 cd01488 Uba3_RUB Ubiquitin act 64.8 8.2 0.00018 41.2 4.4 32 339-384 1-32 (291)
266 PRK07589 ornithine cyclodeamin 64.7 1.1E+02 0.0024 33.5 13.0 108 336-476 128-239 (346)
267 PF01494 FAD_binding_3: FAD bi 64.4 8.2 0.00018 39.3 4.2 34 338-386 2-35 (356)
268 TIGR01292 TRX_reduct thioredox 64.2 8.1 0.00018 38.9 4.0 31 339-384 2-32 (300)
269 TIGR00441 gmhA phosphoheptose 64.2 40 0.00086 32.1 8.5 25 336-361 10-34 (154)
270 PRK04346 tryptophan synthase s 63.7 2.3E+02 0.005 31.7 15.4 124 420-561 213-354 (397)
271 PRK12409 D-amino acid dehydrog 63.5 9.1 0.0002 41.2 4.5 33 338-385 2-34 (410)
272 PRK06407 ornithine cyclodeamin 63.2 56 0.0012 34.8 10.2 107 337-475 117-225 (301)
273 PLN02268 probable polyamine ox 62.8 4.8 0.0001 43.8 2.3 42 339-386 2-47 (435)
274 COG2423 Predicted ornithine cy 62.6 1.2E+02 0.0026 33.2 12.7 126 318-479 116-242 (330)
275 PLN02819 lysine-ketoglutarate 62.4 31 0.00067 43.1 9.1 25 335-359 201-225 (1042)
276 cd05006 SIS_GmhA Phosphoheptos 62.4 39 0.00086 32.5 8.2 22 427-450 101-122 (177)
277 TIGR03693 ocin_ThiF_like putat 61.8 30 0.00066 40.8 8.4 139 266-439 71-216 (637)
278 TIGR00873 gnd 6-phosphoglucona 61.7 30 0.00064 39.3 8.3 98 339-464 1-99 (467)
279 COG0476 ThiF Dinucleotide-util 61.7 5.7 0.00012 40.6 2.4 36 335-384 28-63 (254)
280 PRK09490 metH B12-dependent me 61.6 29 0.00063 44.0 8.8 119 267-441 441-572 (1229)
281 PRK06823 ornithine cyclodeamin 61.3 78 0.0017 34.0 11.0 109 336-477 127-237 (315)
282 KOG2304 3-hydroxyacyl-CoA dehy 60.7 7.7 0.00017 40.8 3.1 32 338-384 12-43 (298)
283 PRK07236 hypothetical protein; 60.4 13 0.00028 39.9 4.9 34 334-372 3-36 (386)
284 TIGR00393 kpsF KpsF/GutQ famil 60.3 28 0.0006 35.4 7.1 36 427-465 47-83 (268)
285 cd01489 Uba2_SUMO Ubiquitin ac 60.2 12 0.00026 40.3 4.7 106 339-463 1-123 (312)
286 PRK08507 prephenate dehydrogen 60.0 54 0.0012 33.9 9.2 33 339-384 2-34 (275)
287 PRK06249 2-dehydropantoate 2-r 59.9 14 0.00031 38.9 5.1 107 335-467 3-110 (313)
288 COG0565 LasT rRNA methylase [T 59.8 30 0.00065 36.3 7.2 82 335-440 2-85 (242)
289 PRK07819 3-hydroxybutyryl-CoA 59.5 12 0.00026 39.3 4.4 32 338-384 6-37 (286)
290 PF01266 DAO: FAD dependent ox 59.5 13 0.00029 37.8 4.7 33 339-386 1-33 (358)
291 PRK13938 phosphoheptose isomer 59.5 34 0.00074 34.4 7.4 101 336-460 44-145 (196)
292 PRK07530 3-hydroxybutyryl-CoA 59.0 13 0.00028 38.7 4.5 33 337-384 4-36 (292)
293 PRK08618 ornithine cyclodeamin 59.0 93 0.002 33.3 11.0 105 336-474 126-233 (325)
294 PRK12570 N-acetylmuramic acid- 58.7 31 0.00068 36.8 7.4 37 427-466 127-165 (296)
295 PRK09564 coenzyme A disulfide 58.7 14 0.00031 40.3 5.0 37 338-387 1-37 (444)
296 PF05834 Lycopene_cycl: Lycope 58.6 12 0.00027 40.4 4.4 35 340-387 2-36 (374)
297 PRK11559 garR tartronate semia 58.5 44 0.00095 34.7 8.3 21 338-358 3-23 (296)
298 COG3349 Uncharacterized conser 58.4 7.2 0.00016 44.5 2.7 46 338-389 1-51 (485)
299 PF13454 NAD_binding_9: FAD-NA 58.2 11 0.00024 35.6 3.6 36 341-386 1-36 (156)
300 TIGR01505 tartro_sem_red 2-hyd 58.1 41 0.00088 34.9 8.0 31 339-384 1-31 (291)
301 PRK11883 protoporphyrinogen ox 58.0 7.5 0.00016 41.9 2.7 22 338-359 1-22 (451)
302 PRK13512 coenzyme A disulfide 57.8 14 0.00031 40.7 4.9 34 338-384 2-35 (438)
303 TIGR03169 Nterm_to_SelD pyridi 57.8 10 0.00022 40.1 3.6 36 339-386 1-36 (364)
304 COG1052 LdhA Lactate dehydroge 57.7 85 0.0019 34.1 10.6 90 335-464 144-237 (324)
305 COG1064 AdhP Zn-dependent alco 57.6 71 0.0015 35.1 9.9 81 321-436 155-238 (339)
306 PLN02740 Alcohol dehydrogenase 57.4 38 0.00082 36.4 7.9 34 336-383 198-231 (381)
307 PRK13937 phosphoheptose isomer 57.3 43 0.00093 33.0 7.6 22 427-450 106-127 (188)
308 PRK04965 NADH:flavorubredoxin 57.0 18 0.00039 38.7 5.4 36 338-386 3-38 (377)
309 PF13407 Peripla_BP_4: Peripla 56.8 64 0.0014 31.7 8.9 157 158-345 53-217 (257)
310 PRK11730 fadB multifunctional 56.4 71 0.0015 38.2 10.5 107 421-538 413-527 (715)
311 TIGR02028 ChlP geranylgeranyl 56.2 13 0.00028 40.5 4.1 21 339-359 2-22 (398)
312 PLN02676 polyamine oxidase 56.1 18 0.0004 40.8 5.5 24 336-359 25-48 (487)
313 PRK07417 arogenate dehydrogena 55.8 39 0.00086 35.0 7.4 31 339-384 2-32 (279)
314 TIGR02082 metH 5-methyltetrahy 55.4 71 0.0015 40.5 10.7 68 350-442 485-557 (1178)
315 PRK07233 hypothetical protein; 55.3 13 0.00028 39.8 3.9 21 339-359 1-21 (434)
316 PRK13403 ketol-acid reductoiso 55.3 33 0.00073 37.6 7.0 80 335-449 14-96 (335)
317 cd08281 liver_ADH_like1 Zinc-d 55.3 62 0.0013 34.5 9.0 87 336-449 191-280 (371)
318 PF13241 NAD_binding_7: Putati 55.0 10 0.00022 33.8 2.5 36 334-384 4-39 (103)
319 PRK12810 gltD glutamate syntha 54.9 16 0.00034 40.9 4.6 34 336-384 142-175 (471)
320 TIGR02023 BchP-ChlP geranylger 54.8 14 0.00031 39.6 4.2 21 339-359 2-22 (388)
321 PF03435 Saccharop_dh: Sacchar 54.7 15 0.00032 39.7 4.3 83 340-449 1-87 (386)
322 PRK12769 putative oxidoreducta 54.5 16 0.00035 42.7 4.8 34 336-384 326-359 (654)
323 cd05710 SIS_1 A subgroup of th 54.4 59 0.0013 29.5 7.5 62 427-497 47-110 (120)
324 PF13450 NAD_binding_8: NAD(P) 54.2 19 0.00042 29.8 4.0 30 342-386 1-30 (68)
325 TIGR01316 gltA glutamate synth 53.7 19 0.00042 40.0 5.1 35 335-384 131-165 (449)
326 PRK01438 murD UDP-N-acetylmura 53.6 21 0.00045 39.8 5.3 24 335-358 14-37 (480)
327 KOG2013 SMT3/SUMO-activating c 53.5 13 0.00029 42.5 3.7 75 335-432 10-84 (603)
328 TIGR03451 mycoS_dep_FDH mycoth 53.2 61 0.0013 34.3 8.5 34 336-383 176-209 (358)
329 PF03447 NAD_binding_3: Homose 52.5 32 0.0007 30.7 5.5 80 344-449 1-80 (117)
330 PRK00414 gmhA phosphoheptose i 52.3 79 0.0017 31.4 8.6 25 336-361 43-67 (192)
331 cd08233 butanediol_DH_like (2R 52.3 2.5E+02 0.0054 29.4 12.8 18 336-353 172-189 (351)
332 PRK00141 murD UDP-N-acetylmura 52.2 19 0.00041 40.4 4.8 25 335-359 13-37 (473)
333 PF13738 Pyr_redox_3: Pyridine 52.2 17 0.00036 34.7 3.8 24 335-358 165-188 (203)
334 TIGR01790 carotene-cycl lycope 52.1 17 0.00036 38.8 4.1 31 340-385 2-32 (388)
335 PRK14806 bifunctional cyclohex 51.9 54 0.0012 38.7 8.6 34 338-384 4-37 (735)
336 TIGR00031 UDP-GALP_mutase UDP- 51.9 18 0.0004 39.8 4.5 31 339-384 3-33 (377)
337 COG2072 TrkA Predicted flavopr 51.9 19 0.00042 40.2 4.7 36 336-385 7-42 (443)
338 COG0771 MurD UDP-N-acetylmuram 51.8 61 0.0013 36.9 8.6 35 335-384 5-39 (448)
339 PRK07251 pyridine nucleotide-d 51.7 19 0.00041 39.5 4.6 34 337-385 3-36 (438)
340 PRK06847 hypothetical protein; 51.5 19 0.00042 37.9 4.5 27 337-368 4-30 (375)
341 PLN00112 malate dehydrogenase 51.4 45 0.00097 37.8 7.4 136 337-492 100-254 (444)
342 PRK04176 ribulose-1,5-biphosph 51.3 18 0.00039 37.5 4.1 36 335-385 23-58 (257)
343 TIGR00465 ilvC ketol-acid redu 51.3 59 0.0013 35.0 8.0 25 335-359 1-25 (314)
344 PRK12771 putative glutamate sy 51.3 19 0.00041 41.2 4.6 35 335-384 135-169 (564)
345 PLN02172 flavin-containing mon 51.1 21 0.00045 40.2 4.8 43 335-382 8-52 (461)
346 PRK11259 solA N-methyltryptoph 50.8 20 0.00042 37.8 4.3 35 337-386 3-37 (376)
347 PRK00683 murD UDP-N-acetylmura 50.6 64 0.0014 35.5 8.4 114 337-504 3-116 (418)
348 PLN02172 flavin-containing mon 50.5 21 0.00045 40.2 4.7 36 335-385 202-237 (461)
349 PRK06392 homoserine dehydrogen 50.4 67 0.0015 34.9 8.3 86 339-436 2-90 (326)
350 cd01833 XynB_like SGNH_hydrola 50.4 64 0.0014 29.6 7.2 66 203-283 18-83 (157)
351 TIGR01377 soxA_mon sarcosine o 50.3 20 0.00044 37.8 4.3 34 339-387 2-35 (380)
352 PRK07364 2-octaprenyl-6-methox 49.9 18 0.00039 38.8 4.0 27 337-368 18-44 (415)
353 PRK11749 dihydropyrimidine deh 49.8 21 0.00045 39.6 4.5 35 335-384 138-172 (457)
354 COG1712 Predicted dinucleotide 49.7 74 0.0016 33.6 8.0 115 339-489 2-120 (255)
355 PRK05479 ketol-acid reductoiso 49.5 53 0.0012 35.8 7.4 25 335-359 15-39 (330)
356 TIGR01789 lycopene_cycl lycope 49.4 14 0.00031 40.0 3.2 20 340-359 2-21 (370)
357 PRK12829 short chain dehydroge 49.4 42 0.0009 33.2 6.2 36 335-384 9-44 (264)
358 COG1893 ApbA Ketopantoate redu 49.2 44 0.00095 35.8 6.7 22 338-359 1-22 (307)
359 PRK08163 salicylate hydroxylas 48.8 22 0.00047 37.9 4.4 23 337-359 4-26 (396)
360 PRK12770 putative glutamate sy 48.7 24 0.00051 37.6 4.6 34 336-384 17-50 (352)
361 PRK06416 dihydrolipoamide dehy 48.6 22 0.00047 39.3 4.4 34 337-385 4-37 (462)
362 TIGR00292 thiazole biosynthesi 48.5 21 0.00045 37.0 4.0 38 335-387 19-56 (254)
363 PRK10262 thioredoxin reductase 48.4 23 0.0005 37.0 4.4 24 336-359 5-28 (321)
364 TIGR02032 GG-red-SF geranylger 48.4 22 0.00048 35.5 4.1 20 339-358 2-21 (295)
365 PTZ00318 NADH dehydrogenase-li 48.2 20 0.00043 39.4 4.1 35 335-384 8-42 (424)
366 PRK07877 hypothetical protein; 48.0 15 0.00033 43.9 3.3 110 335-463 105-229 (722)
367 cd08255 2-desacetyl-2-hydroxye 47.7 2.4E+02 0.0052 28.2 11.4 21 336-356 97-117 (277)
368 PLN02985 squalene monooxygenas 47.6 25 0.00055 40.1 4.9 23 336-358 42-64 (514)
369 PRK06475 salicylate hydroxylas 47.6 21 0.00045 38.6 4.0 26 338-368 3-28 (400)
370 PRK12266 glpD glycerol-3-phosp 47.6 22 0.00047 40.3 4.3 34 337-385 6-39 (508)
371 PRK06184 hypothetical protein; 47.3 24 0.00052 39.5 4.6 27 336-367 2-28 (502)
372 PRK12831 putative oxidoreducta 47.3 25 0.00054 39.4 4.7 35 335-384 138-172 (464)
373 cd05188 MDR Medium chain reduc 47.2 55 0.0012 31.9 6.6 35 320-357 121-155 (271)
374 cd08296 CAD_like Cinnamyl alco 47.0 3.2E+02 0.007 28.4 12.6 22 336-357 163-184 (333)
375 PRK07608 ubiquinone biosynthes 46.8 22 0.00048 37.7 4.0 21 338-358 6-26 (388)
376 PRK12814 putative NADPH-depend 46.8 24 0.00052 41.4 4.6 24 336-359 192-215 (652)
377 PRK09126 hypothetical protein; 46.7 24 0.00052 37.6 4.3 31 337-372 3-33 (392)
378 PRK01747 mnmC bifunctional tRN 46.4 25 0.00054 41.1 4.7 34 338-386 261-294 (662)
379 cd01493 APPBP1_RUB Ubiquitin a 46.2 22 0.00048 39.9 4.1 36 335-384 18-53 (425)
380 PTZ00245 ubiquitin activating 45.9 20 0.00043 38.3 3.4 36 335-384 24-59 (287)
381 KOG0743 AAA+-type ATPase [Post 45.8 28 0.00061 39.5 4.7 154 129-345 191-345 (457)
382 PF02558 ApbA: Ketopantoate re 45.7 31 0.00067 31.8 4.3 31 340-385 1-31 (151)
383 TIGR02053 MerA mercuric reduct 45.7 25 0.00053 38.9 4.3 30 340-384 3-32 (463)
384 PRK05976 dihydrolipoamide dehy 45.7 27 0.00058 38.9 4.6 33 337-384 4-36 (472)
385 PRK11154 fadJ multifunctional 45.6 2.8E+02 0.0061 33.2 13.2 107 421-538 410-524 (708)
386 cd05007 SIS_Etherase N-acetylm 45.5 85 0.0018 32.7 8.0 38 427-466 118-156 (257)
387 COG2072 TrkA Predicted flavopr 45.5 26 0.00056 39.2 4.5 40 334-388 172-211 (443)
388 PRK06753 hypothetical protein; 45.2 26 0.00056 37.0 4.2 25 339-368 2-26 (373)
389 TIGR01214 rmlD dTDP-4-dehydror 45.1 44 0.00096 33.7 5.7 59 339-437 1-60 (287)
390 PRK08010 pyridine nucleotide-d 45.1 24 0.00053 38.7 4.1 32 338-384 4-35 (441)
391 PRK06912 acoL dihydrolipoamide 45.1 26 0.00056 38.8 4.4 31 339-384 2-32 (458)
392 TIGR03364 HpnW_proposed FAD de 45.0 25 0.00055 37.0 4.1 32 339-385 2-33 (365)
393 PRK00711 D-amino acid dehydrog 45.0 27 0.00059 37.4 4.4 31 339-384 2-32 (416)
394 PRK09853 putative selenate red 45.0 25 0.00055 43.7 4.6 35 335-384 537-571 (1019)
395 COG0644 FixC Dehydrogenases (f 45.0 28 0.00061 37.8 4.5 23 337-359 3-25 (396)
396 PRK11101 glpA sn-glycerol-3-ph 44.7 27 0.00058 40.0 4.5 33 337-384 6-38 (546)
397 PRK12779 putative bifunctional 44.6 25 0.00055 43.3 4.5 40 335-389 304-347 (944)
398 PRK08655 prephenate dehydrogen 44.6 1E+02 0.0023 34.5 9.0 91 339-464 2-93 (437)
399 TIGR01350 lipoamide_DH dihydro 44.5 27 0.00059 38.4 4.4 30 339-383 3-32 (461)
400 PRK14694 putative mercuric red 44.4 31 0.00066 38.4 4.8 34 336-384 5-38 (468)
401 PF00743 FMO-like: Flavin-bind 44.2 14 0.00031 42.4 2.2 30 338-372 2-31 (531)
402 PLN02852 ferredoxin-NADP+ redu 44.1 24 0.00052 40.4 3.9 37 335-384 24-60 (491)
403 TIGR03736 PRTRC_ThiF PRTRC sys 44.1 37 0.00081 35.4 5.1 46 336-386 10-56 (244)
404 PRK04690 murD UDP-N-acetylmura 44.1 29 0.00064 38.9 4.6 25 335-359 6-30 (468)
405 TIGR01285 nifN nitrogenase mol 44.0 36 0.00079 38.0 5.3 82 335-449 309-390 (432)
406 PRK12778 putative bifunctional 43.9 34 0.00074 40.7 5.3 35 335-384 429-463 (752)
407 KOG1370 S-adenosylhomocysteine 43.7 1.1E+02 0.0023 33.9 8.4 163 265-486 154-338 (434)
408 PLN02463 lycopene beta cyclase 43.7 27 0.00058 39.3 4.2 22 337-358 28-49 (447)
409 TIGR01317 GOGAT_sm_gam glutama 43.7 31 0.00067 38.9 4.7 34 336-384 142-175 (485)
410 PRK06292 dihydrolipoamide dehy 43.7 31 0.00066 38.0 4.6 33 337-384 3-35 (460)
411 PRK00048 dihydrodipicolinate r 43.6 76 0.0016 32.9 7.2 88 338-461 2-90 (257)
412 PF07991 IlvN: Acetohydroxy ac 43.5 66 0.0014 32.0 6.4 81 335-449 2-85 (165)
413 KOG2018 Predicted dinucleotide 43.2 28 0.00061 38.2 4.1 38 335-386 72-109 (430)
414 PLN00093 geranylgeranyl diphos 43.2 28 0.0006 39.0 4.2 23 337-359 39-61 (450)
415 PRK07045 putative monooxygenas 43.2 30 0.00065 37.0 4.4 27 337-368 5-31 (388)
416 PF12831 FAD_oxidored: FAD dep 43.0 30 0.00064 38.3 4.4 33 340-387 2-34 (428)
417 PRK09897 hypothetical protein; 42.9 30 0.00066 39.9 4.6 33 339-384 3-35 (534)
418 COG1179 Dinucleotide-utilizing 42.8 26 0.00056 37.1 3.6 41 335-389 28-68 (263)
419 PRK08020 ubiF 2-octaprenyl-3-m 42.8 27 0.00059 37.2 4.0 23 336-358 4-26 (391)
420 PRK08773 2-octaprenyl-3-methyl 42.8 27 0.00059 37.3 4.0 22 337-358 6-27 (392)
421 PRK01713 ornithine carbamoyltr 42.7 1.7E+02 0.0037 31.9 10.0 133 275-434 99-232 (334)
422 TIGR03143 AhpF_homolog putativ 42.7 27 0.00059 40.0 4.2 32 338-384 5-36 (555)
423 PRK10309 galactitol-1-phosphat 42.6 68 0.0015 33.6 6.8 32 322-357 150-181 (347)
424 PRK05249 soluble pyridine nucl 42.5 31 0.00067 38.0 4.4 35 336-385 4-38 (461)
425 PRK06199 ornithine cyclodeamin 42.4 2.4E+02 0.0052 31.3 11.2 88 336-447 154-250 (379)
426 KOG3851 Sulfide:quinone oxidor 42.4 26 0.00057 38.7 3.7 25 336-360 38-62 (446)
427 COG0569 TrkA K+ transport syst 42.3 31 0.00068 35.1 4.1 31 339-384 2-32 (225)
428 TIGR01984 UbiH 2-polyprenyl-6- 42.1 26 0.00057 37.0 3.7 24 340-368 2-26 (382)
429 cd08239 THR_DH_like L-threonin 42.0 69 0.0015 33.3 6.7 47 319-383 150-196 (339)
430 PRK13369 glycerol-3-phosphate 41.9 28 0.00061 39.2 4.1 34 337-385 6-39 (502)
431 TIGR01283 nifE nitrogenase mol 41.9 50 0.0011 37.0 6.0 28 335-367 324-351 (456)
432 PRK10892 D-arabinose 5-phospha 41.9 94 0.002 32.8 7.8 85 337-466 47-132 (326)
433 COG0665 DadA Glycine/D-amino a 41.9 38 0.00082 35.7 4.8 37 336-387 3-39 (387)
434 PF00743 FMO-like: Flavin-bind 41.9 20 0.00043 41.3 2.9 24 335-358 181-204 (531)
435 TIGR01692 HIBADH 3-hydroxyisob 41.7 88 0.0019 32.6 7.4 28 342-384 1-28 (288)
436 TIGR03315 Se_ygfK putative sel 41.5 31 0.00066 43.0 4.5 34 336-384 536-569 (1012)
437 PLN02527 aspartate carbamoyltr 41.5 4.8E+02 0.01 28.1 14.4 133 274-437 93-228 (306)
438 PRK11199 tyrA bifunctional cho 41.5 1.1E+02 0.0024 33.6 8.4 34 336-384 97-131 (374)
439 PRK05993 short chain dehydroge 41.5 1.2E+02 0.0027 30.7 8.3 33 337-384 4-37 (277)
440 PRK15461 NADH-dependent gamma- 41.1 82 0.0018 33.1 7.1 31 339-384 3-33 (296)
441 TIGR01373 soxB sarcosine oxida 41.1 41 0.00088 36.2 5.0 38 336-386 29-66 (407)
442 PRK13302 putative L-aspartate 41.0 1.3E+02 0.0029 31.4 8.6 95 335-463 4-98 (271)
443 TIGR01988 Ubi-OHases Ubiquinon 40.9 30 0.00066 36.3 3.9 20 340-359 2-21 (385)
444 PF01946 Thi4: Thi4 family; PD 40.9 41 0.00088 35.1 4.6 35 336-385 16-50 (230)
445 TIGR00274 N-acetylmuramic acid 40.9 74 0.0016 33.9 6.8 39 427-467 126-165 (291)
446 PRK10157 putative oxidoreducta 40.8 31 0.00068 38.0 4.1 26 338-368 6-31 (428)
447 PRK07588 hypothetical protein; 40.7 33 0.00072 36.7 4.2 30 338-372 1-30 (391)
448 PRK04308 murD UDP-N-acetylmura 40.7 39 0.00083 37.3 4.8 25 335-359 3-27 (445)
449 TIGR03169 Nterm_to_SelD pyridi 40.7 55 0.0012 34.6 5.9 41 337-386 145-185 (364)
450 cd05008 SIS_GlmS_GlmD_1 SIS (S 40.6 2.3E+02 0.0049 25.2 9.0 24 339-363 1-24 (126)
451 COG1062 AdhC Zn-dependent alco 40.5 1.3E+02 0.0028 33.5 8.5 117 336-486 185-307 (366)
452 KOG0024 Sorbitol dehydrogenase 40.4 47 0.001 36.6 5.2 49 317-383 154-202 (354)
453 TIGR02819 fdhA_non_GSH formald 40.3 2E+02 0.0043 31.5 10.2 35 320-358 173-207 (393)
454 PRK11728 hydroxyglutarate oxid 40.3 37 0.00079 36.6 4.5 34 338-384 3-36 (393)
455 KOG1494 NAD-dependent malate d 40.3 37 0.0008 36.8 4.3 186 336-545 27-268 (345)
456 TIGR01421 gluta_reduc_1 glutat 40.2 34 0.00074 38.0 4.3 33 337-384 2-34 (450)
457 PRK14852 hypothetical protein; 40.1 31 0.00067 42.7 4.2 109 335-463 330-457 (989)
458 PRK08243 4-hydroxybenzoate 3-m 40.0 36 0.00078 36.6 4.4 27 337-368 2-28 (392)
459 KOG1495 Lactate dehydrogenase 39.9 39 0.00084 36.5 4.4 135 335-496 18-169 (332)
460 cd05288 PGDH Prostaglandin deh 39.8 2.8E+02 0.0062 28.3 10.7 24 335-358 144-168 (329)
461 PF10727 Rossmann-like: Rossma 39.7 41 0.00088 31.7 4.2 80 336-449 9-88 (127)
462 PRK12416 protoporphyrinogen ox 39.6 21 0.00046 39.2 2.6 50 338-388 2-56 (463)
463 PRK08244 hypothetical protein; 39.6 34 0.00074 38.1 4.3 26 338-368 3-28 (493)
464 PRK13301 putative L-aspartate 39.6 84 0.0018 33.5 6.9 117 338-489 3-122 (267)
465 PF02645 DegV: Uncharacterised 39.5 16 0.00035 38.0 1.6 127 187-368 1-140 (280)
466 PF06690 DUF1188: Protein of u 39.5 84 0.0018 33.2 6.7 142 335-542 42-187 (252)
467 PRK12809 putative oxidoreducta 39.5 40 0.00087 39.4 5.0 35 336-385 309-343 (639)
468 PTZ00431 pyrroline carboxylate 39.4 51 0.0011 34.0 5.2 38 336-384 2-39 (260)
469 PRK06185 hypothetical protein; 39.2 35 0.00075 36.6 4.1 23 336-358 5-27 (407)
470 TIGR03219 salicylate_mono sali 39.1 35 0.00077 36.9 4.2 21 339-359 2-22 (414)
471 COG0562 Glf UDP-galactopyranos 39.1 36 0.00078 37.5 4.1 31 339-384 3-33 (374)
472 TIGR01318 gltD_gamma_fam gluta 38.9 42 0.0009 37.7 4.8 23 336-358 140-162 (467)
473 PRK05732 2-octaprenyl-6-methox 38.9 43 0.00093 35.5 4.7 22 337-358 3-24 (395)
474 cd05014 SIS_Kpsf KpsF-like pro 38.8 1.9E+02 0.0041 25.7 8.2 26 338-365 1-26 (128)
475 PRK07494 2-octaprenyl-6-methox 38.7 35 0.00075 36.4 4.0 22 337-358 7-28 (388)
476 PLN02568 polyamine oxidase 38.6 24 0.00051 40.6 2.9 25 335-359 3-27 (539)
477 PRK13748 putative mercuric red 38.5 35 0.00075 38.7 4.2 34 336-384 97-130 (561)
478 cd08293 PTGR2 Prostaglandin re 38.5 2.6E+02 0.0056 29.0 10.3 18 338-355 156-174 (345)
479 PRK00421 murC UDP-N-acetylmura 38.4 39 0.00084 37.6 4.4 25 335-359 5-30 (461)
480 PRK05714 2-octaprenyl-3-methyl 38.3 34 0.00074 36.8 3.9 22 338-359 3-24 (405)
481 COG1748 LYS9 Saccharopine dehy 38.2 1.1E+02 0.0023 34.4 7.7 84 338-449 2-88 (389)
482 TIGR01832 kduD 2-deoxy-D-gluco 37.8 53 0.0012 32.3 4.9 35 335-384 3-38 (248)
483 PRK06545 prephenate dehydrogen 37.7 1.3E+02 0.0029 32.5 8.3 22 338-359 1-22 (359)
484 PRK00536 speE spermidine synth 37.5 30 0.00065 36.5 3.2 83 338-449 74-157 (262)
485 PRK14620 NAD(P)H-dependent gly 37.5 43 0.00093 35.3 4.4 21 339-359 2-22 (326)
486 cd08278 benzyl_alcohol_DH Benz 37.5 4.8E+02 0.01 27.7 12.4 99 336-465 186-287 (365)
487 PF02254 TrkA_N: TrkA-N domain 37.3 55 0.0012 28.7 4.4 30 340-384 1-30 (116)
488 TIGR01282 nifD nitrogenase mol 37.3 1.9E+02 0.0042 32.8 9.7 33 328-368 329-361 (466)
489 COG3380 Predicted NAD/FAD-depe 37.3 42 0.00091 36.4 4.2 21 339-359 3-23 (331)
490 COG1252 Ndh NADH dehydrogenase 37.3 31 0.00067 38.7 3.4 35 337-384 3-37 (405)
491 PRK05441 murQ N-acetylmuramic 37.2 1.4E+02 0.0031 31.8 8.2 39 427-467 131-170 (299)
492 PRK06182 short chain dehydroge 37.2 1.1E+02 0.0025 30.7 7.2 20 418-437 60-84 (273)
493 PRK14989 nitrite reductase sub 37.1 59 0.0013 39.7 6.0 48 337-395 3-50 (847)
494 cd05279 Zn_ADH1 Liver alcohol 37.0 4.4E+02 0.0095 28.0 12.0 20 336-355 183-202 (365)
495 cd08231 MDR_TM0436_like Hypoth 36.7 95 0.0021 32.6 6.8 49 318-383 162-210 (361)
496 PF01408 GFO_IDH_MocA: Oxidore 36.6 1.3E+02 0.0028 26.4 6.7 81 339-449 2-82 (120)
497 TIGR02437 FadB fatty oxidation 36.6 39 0.00085 40.3 4.3 106 422-538 414-527 (714)
498 PRK08013 oxidoreductase; Provi 36.6 44 0.00094 36.2 4.4 26 337-367 3-28 (400)
499 PRK06115 dihydrolipoamide dehy 36.5 47 0.001 37.1 4.7 32 338-384 4-35 (466)
500 TIGR02733 desat_CrtD C-3',4' d 36.4 47 0.001 37.0 4.7 23 337-359 1-23 (492)
No 1
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=100.00 E-value=9.2e-213 Score=1687.29 Aligned_cols=544 Identities=53% Similarity=0.903 Sum_probs=534.1
Q ss_pred ceeecccccccccCCCCCcCCCCCHHHhhhcccCCCCCCcccCHHHHHHHHHHHHhhhhcccCCCCCCCChhhHHHHHHH
Q 040403 39 PVIVHKRSLDILHDPWFNKGTAFSMTERDRLDLRGLLPPNVMSTDQQIERFMVDLKRLEVQARDGPTDPNALAKWRILNR 118 (623)
Q Consensus 39 ~~~~~~~g~~ll~~p~~NKGtAFt~~ER~~l~L~GLLPp~v~tle~Q~~r~~~~~~~~~~~~~~~~~~~~~l~ky~~L~~ 118 (623)
+..++.+|+++|+||++|||+|||.+|||+|||||||||.|+|+|+|+.||+.+|++++ ++|+||+||+.
T Consensus 24 ~~~~~~~g~~ll~~p~~NKglAFTl~ERq~l~i~GLLPp~v~t~d~Q~~r~~~~l~~~~----------~~l~ky~~L~~ 93 (582)
T KOG1257|consen 24 PVESKKRGYDLLRDPRYNKGLAFTLEERQRLGIHGLLPPVVRTQDEQALRCMNNLRSLT----------SPLAKYIYLMD 93 (582)
T ss_pred ccccccCChhhccCCCcccccccCHHHHHhhCccccCCccccCHHHHHHHHHHHHHhcc----------chHHHHHHHHH
Confidence 45578899999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred hhcccchhhhhhhccCccccCCcccchhhHHHHHHHhhhhcCCCcccccccChhhHHHHHhcCCCCCceEEEEecCceee
Q 040403 119 LHDRNETMYYKVLIANIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAEDRGEMKSMVYNWPAEQVDMIVVTDGSRIL 198 (623)
Q Consensus 119 L~~rNe~LFy~ll~~~~~e~lPivYTPtVg~ac~~~s~~~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rIL 198 (623)
||+|||+|||+++++|++|+||||||||||+|||+||++||+|+|||||++|+|||.++|+|||.++|++||||||||||
T Consensus 94 L~~rNerLfY~~l~~nie~~~PIvYTPTvG~acq~y~~i~r~p~Glfisi~D~Ghi~~~l~nWp~~~V~~IvVTDGerIL 173 (582)
T KOG1257|consen 94 LQDRNERLFYRLLIDNIEELLPIVYTPTVGLACQQYGLIFRRPQGLFISIKDKGHIKQVLKNWPERNVKAIVVTDGERIL 173 (582)
T ss_pred HHHhhhHHHHHHHHhhHHHhCCeeecCcHHHHHHHhhhhhccCceeEEEecccchHHHHHHhCCccceeEEEEeCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccccchhhhHHHHHHhcCCCCCCeeeEEeeccCCccccccCcCCCCcCCCCCCchhhhHhHHHHHHHHHHhC-
Q 040403 199 GLGDLGVQGIGIAVGKLDLYVAAAGINPQRVLPIMIDVGTTNEKLLKDPLYLGLQEHRLDGDEYVSVIDEFMEAIFTRW- 277 (623)
Q Consensus 199 GLGDlG~~GmgI~iGKl~LY~a~gGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~Rv~g~~Y~~~vdefv~av~~~~- 277 (623)
||||||++|||||||||+|||+||||+|++|||||||||||||+||+||||+|+|++|++|++||+|+||||+||+++|
T Consensus 174 GLGDlG~~GmgIpvgKL~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~eYd~~~dEFm~Av~~~yG 253 (582)
T KOG1257|consen 174 GLGDLGVNGMGIPVGKLALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGKEYDEFLDEFMEAVVQRYG 253 (582)
T ss_pred cccccccCcccceecHHHHHHHhcCCChhhceeEEEeccCChHHHhcCccccccccccccccHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeecccCCCchHHHHHHHHhccCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHH
Q 040403 278 PNVIVQFEDFQSKWAFKLLQRYRYKYRMFNDDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAAR 357 (623)
Q Consensus 278 P~~lIqfEDf~~~nAf~lL~ryr~~~~~FNDDiQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~ 357 (623)
|+++||||||+++|||++|+|||+++|||||||||||+|+|||||+|+|++|++ |+|++|||+|||+||+|||+||+
T Consensus 254 ~~~lIqFEDF~~~nAfrlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~~---lsd~~ilf~GAG~A~~GIA~l~v 330 (582)
T KOG1257|consen 254 PNTLIQFEDFANHNAFRLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGKP---LSDHVILFLGAGEAALGIANLIV 330 (582)
T ss_pred cceEEEehhccchhHHHHHHHhccccceecccccchhHHHHHHHHHHHHHhCCc---cccceEEEecCchHHhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHhcCCCcchhhhccCeEEEEccCCcccCCCC-CCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccC
Q 040403 358 KTMARMLGNNESAFDSARSQFWVVDAKGLITEDRE-NIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSA 436 (623)
Q Consensus 358 ~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~-~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~ 436 (623)
.+|+++ |+|+ |||+++|||||++|||+.+|+ +++++|++||++. ++..+|+|||+.||||||||+|+
T Consensus 331 ~~m~~~-Gl~~---eeA~kkIwlvD~~GLi~~~r~~~l~~~~~~fAk~~--------~~~~~L~e~V~~vKPtvLiG~S~ 398 (582)
T KOG1257|consen 331 MAMVKE-GLSE---EEARKKIWLVDSKGLITKGRKASLTEEKKPFAKDH--------EEIKDLEEAVKEVKPTVLIGASG 398 (582)
T ss_pred HHHHHc-CCCH---HHHhccEEEEecCceeeccccCCCChhhccccccC--------hHHHHHHHHHHhcCCcEEEeccc
Confidence 999999 9999 999999999999999999997 7999999999643 34568999999999999999999
Q ss_pred CCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCccccCCCeeccCCCCccccchhH
Q 040403 437 VGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGSPFKDVDLGNGHIGHCNQGNNMYLFPG 516 (623)
Q Consensus 437 ~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~Grai~AtGsPF~pv~~~~G~~~~p~Q~NN~yiFPG 516 (623)
+||+|||||||+| ++++||||||||||||+++||||||||+||+|||||||||||+||+| +||+|+||||||+|+|||
T Consensus 399 ~~g~Fteevl~~M-a~~~erPiIFalSNPT~~aECtae~ay~~t~Gr~ifaSGSPF~pV~~-~gK~~~pgQ~NN~yiFPG 476 (582)
T KOG1257|consen 399 VGGAFTEEVLRAM-AKSNERPIIFALSNPTSKAECTAEQAYKWTKGRAIFASGSPFPPVEY-NGKVYVPGQGNNAYIFPG 476 (582)
T ss_pred CCccCCHHHHHHH-HhcCCCceEEecCCCccccccCHHHHhhhcCCcEEEecCCCCCCcee-CCcEecccCCceeEecch
Confidence 9999999999999 99999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred HHHHHHHcCCcccCHHHHHHHHHHHHcccCcccccCCccccCCCCcccchHHHHHHHHHHHHHcCccccccCccchhccc
Q 040403 517 VGLGTLLSGSRIISDGMLQAAAECLAEYMTEEEVVKGKIYPSISSIRNITKEVAAAVVKEALEEDLAEGYRGVDARELQR 596 (623)
Q Consensus 517 iglG~~~~~a~~Itd~m~~aAA~aLA~~v~~~~l~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~GlA~~~~~~~~~~~p~ 596 (623)
||||++++++++|||+||++||++||++++++++++|.||||+++||+||.+||++|+++|+++|+|+ .+|+
T Consensus 477 i~Lg~vlsg~~~i~D~mfl~Aae~LA~~v~~e~~~~g~lyPpl~~ir~iS~~Ia~aV~~~a~~~glA~--------~~p~ 548 (582)
T KOG1257|consen 477 IGLGVVLSGARRIPDEMFLAAAEALAEQVSEEELEKGRLYPPLSNIREISANIAAAVLKYAYEEGLAT--------RYPE 548 (582)
T ss_pred HHHHHHHcCCccCCHHHHHHHHHHHHhhCCHhHhhcCCcCCChhHHHHHHHHHHHHHHHHHHhcCccc--------cCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 4676
Q ss_pred CCHHHHHHHHHhCCcccCCCCCc
Q 040403 597 FNQEELLEFVELNMWHPEYPTLV 619 (623)
Q Consensus 597 ~~~~dl~~~I~~~mw~P~Y~~~v 619 (623)
|+|+++|++++||+|+|++++
T Consensus 549 --P~d~~~~~~~~~y~~~Y~~~~ 569 (582)
T KOG1257|consen 549 --PKDKEKFIEESMYNPEYRNSL 569 (582)
T ss_pred --cccHHHHHHhccCCccccccc
Confidence 999999999999999999975
No 2
>PRK13529 malate dehydrogenase; Provisional
Probab=100.00 E-value=2.5e-209 Score=1695.71 Aligned_cols=554 Identities=44% Similarity=0.779 Sum_probs=538.9
Q ss_pred CcceeecccccccccCCCCCcCCCCCHHHhhhcccCCCCCCcccCHHHHHHHHHHHHhhhhcccCCCCCCCChhhHHHHH
Q 040403 37 QRPVIVHKRSLDILHDPWFNKGTAFSMTERDRLDLRGLLPPNVMSTDQQIERFMVDLKRLEVQARDGPTDPNALAKWRIL 116 (623)
Q Consensus 37 ~~~~~~~~~g~~ll~~p~~NKGtAFt~~ER~~l~L~GLLPp~v~tle~Q~~r~~~~~~~~~~~~~~~~~~~~~l~ky~~L 116 (623)
.+...+..+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||++++ ++|+||+||
T Consensus 8 ~~~~~~~~~G~~lL~~p~~NKgtaFt~~ER~~lgl~GLLPp~v~t~e~Q~~R~~~~~~~~~----------~~l~ky~~L 77 (563)
T PRK13529 8 KRPLYTPLRGPALLNNPLLNKGTAFTEEEREEFGLEGLLPPAVETLEEQAERAYRQYQSKP----------TDLEKHIYL 77 (563)
T ss_pred CcceeecccchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhcCC----------ChHHHHHHH
Confidence 3556678899999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHhhcccchhhhhhhccCccccCCcccchhhHHHHHHHhhhhcCCCcccccccChhhHHHHHhcCCCCCceEEEEecCce
Q 040403 117 NRLHDRNETMYYKVLIANIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAEDRGEMKSMVYNWPAEQVDMIVVTDGSR 196 (623)
Q Consensus 117 ~~L~~rNe~LFy~ll~~~~~e~lPivYTPtVg~ac~~~s~~~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~r 196 (623)
++||+|||+||||++.+|++|+||||||||||+|||+||++||+|||||||++|+|+|.++|+|||.+||++||||||||
T Consensus 78 ~~L~~~Ne~Lfy~ll~~~~ee~~PivYTPTVG~ac~~~s~~~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~r 157 (563)
T PRK13529 78 RNLQDRNETLFYRLLSDHLEEMMPIIYTPTVGEACERFSHIYRRPRGLFISYDDRDRIEDILQNAPNRDIKLIVVTDGER 157 (563)
T ss_pred HHHHhcCchhhHHHHHhCHHHhCCeeecccHHHHHHHHhhcccCCCceEeccCCHHHHHHHHhcCCcccceEEEEeCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCCccccchhhhHHHHHHhcCCCCCCeeeEEeeccCCccccccCcCCCCcCCCCCCchhhhHhHHHHHHHHHHh
Q 040403 197 ILGLGDLGVQGIGIAVGKLDLYVAAAGINPQRVLPIMIDVGTTNEKLLKDPLYLGLQEHRLDGDEYVSVIDEFMEAIFTR 276 (623)
Q Consensus 197 ILGLGDlG~~GmgI~iGKl~LY~a~gGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~Rv~g~~Y~~~vdefv~av~~~ 276 (623)
||||||||++|||||+||++|||+||||||++|||||||||||||+||+||+|+||||||++|++||+|+||||++|+++
T Consensus 158 ILGLGDlG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~Ll~DP~YlG~r~~R~~g~eY~~f~defv~av~~~ 237 (563)
T PRK13529 158 ILGIGDQGIGGMGIPIGKLSLYTACGGIDPARTLPVVLDVGTNNEQLLNDPLYLGWRHPRIRGEEYDEFVDEFVQAVKRR 237 (563)
T ss_pred eeeccccCCCcccccccHHHHhhccCCCChhheeceEEecCCCchhhccCccccCcCCCCCchHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeecccCCCchHHHHHHHHhccCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHH
Q 040403 277 WPNVIVQFEDFQSKWAFKLLQRYRYKYRMFNDDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAA 356 (623)
Q Consensus 277 ~P~~lIqfEDf~~~nAf~lL~ryr~~~~~FNDDiQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll 356 (623)
||+++||||||+++|||+||+|||++||||||||||||+|+|||||||+|++|++ |+||||||+|||+||+|||+||
T Consensus 238 ~P~~~I~~EDf~~~~af~iL~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~---l~d~riv~~GAGsAgiGia~ll 314 (563)
T PRK13529 238 FPNALLQFEDFAQKNARRILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEP---LSDQRIVFLGAGSAGCGIADQI 314 (563)
T ss_pred CCCeEEehhhcCCchHHHHHHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCC---hhhcEEEEECCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccc-cCCCCCHHHHHhhcCCcEEEecc
Q 040403 357 RKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQG-LWEGASLVEVVQQVKPDVLLGLS 435 (623)
Q Consensus 357 ~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~-~~~~~~L~e~V~~vkptvLIG~S 435 (623)
+++|+++ |+|+ |||++||||||++|||+++|++|+++|++||++.+++..|. .....+|+|||+.+|||||||+|
T Consensus 315 ~~~~~~~-Gl~~---eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S 390 (563)
T PRK13529 315 VAAMVRE-GLSE---EEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVS 390 (563)
T ss_pred HHHHHHc-CCCh---hHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEec
Confidence 9999998 9999 99999999999999999999999999999999866655553 23457999999999999999999
Q ss_pred CCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCccccCCCeeccCCCCccccchh
Q 040403 436 AVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGSPFKDVDLGNGHIGHCNQGNNMYLFP 515 (623)
Q Consensus 436 ~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~Grai~AtGsPF~pv~~~~G~~~~p~Q~NN~yiFP 515 (623)
+++|+||||||++| +++|+|||||||||||++|||||||||+||+|||||||||||+||+| +|++++||||||+||||
T Consensus 391 ~~~g~Ft~evv~~M-a~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGspf~pv~~-~G~~~~p~Q~NN~~iFP 468 (563)
T PRK13529 391 GQPGAFTEEIVKEM-AAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSPFAPVEY-NGKTYPIGQCNNAYIFP 468 (563)
T ss_pred CCCCCCCHHHHHHH-HhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECCCCCCeee-CCeEeccCcCcceeecc
Confidence 99999999999999 99999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHcCCcccCHHHHHHHHHHHHcccCcccccCCccccCCCCcccchHHHHHHHHHHHHHcCccccccCccchhcc
Q 040403 516 GVGLGTLLSGSRIISDGMLQAAAECLAEYMTEEEVVKGKIYPSISSIRNITKEVAAAVVKEALEEDLAEGYRGVDARELQ 595 (623)
Q Consensus 516 GiglG~~~~~a~~Itd~m~~aAA~aLA~~v~~~~l~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~GlA~~~~~~~~~~~p 595 (623)
|||||+++++|++|||+||++||++||++++++++..+.|||+++++|+||.+||.||+++|+++|+|+ .+
T Consensus 469 GiglGa~~~~a~~Itd~m~~aAA~alA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~GlA~---------~~ 539 (563)
T PRK13529 469 GLGLGVIASGARRVTDGMLMAAAHALADCVPLAKPGEGALLPPVEDIREVSRAIAIAVAKAAIEEGLAR---------ET 539 (563)
T ss_pred cchhhhhhcCCcCCCHHHHHHHHHHHHhhCccccCCCCeeECCCcchhhhHHHHHHHHHHHHHHhCCCC---------CC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 23
Q ss_pred cCCHHHHHHHHHhCCcccCCCCCcc
Q 040403 596 RFNQEELLEFVELNMWHPEYPTLVY 620 (623)
Q Consensus 596 ~~~~~dl~~~I~~~mw~P~Y~~~v~ 620 (623)
. |+|+.+||+++||+|+|+|++.
T Consensus 540 ~--~~~~~~~i~~~~w~P~Y~~~~~ 562 (563)
T PRK13529 540 S--DEDLEQAIEDNMWQPEYRPYRR 562 (563)
T ss_pred C--HHHHHHHHHhcCcCCCCccccC
Confidence 3 7999999999999999999764
No 3
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=1.2e-205 Score=1665.61 Aligned_cols=546 Identities=49% Similarity=0.869 Sum_probs=527.0
Q ss_pred eeecccccccccCCCCCcCCCCCHHHhhhcccCCCCCCcccCHHHHHHHHHHHHhhhhcccCCCCCCCChhhHHHHHHHh
Q 040403 40 VIVHKRSLDILHDPWFNKGTAFSMTERDRLDLRGLLPPNVMSTDQQIERFMVDLKRLEVQARDGPTDPNALAKWRILNRL 119 (623)
Q Consensus 40 ~~~~~~g~~ll~~p~~NKGtAFt~~ER~~l~L~GLLPp~v~tle~Q~~r~~~~~~~~~~~~~~~~~~~~~l~ky~~L~~L 119 (623)
+.+..+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||++++ ++|+||+||++|
T Consensus 13 ~~~~~~G~~lL~~p~~NKgtAFt~~ER~~l~l~GLlPp~v~t~e~Q~~R~~~~~~~~~----------~~l~Ky~~L~~L 82 (559)
T PTZ00317 13 VPSNARGVDVLRNRFLNKGTAFTAEEREHLGIEGLLPPTVETLEQQVERLWTQFNRIE----------TPINKYQFLRNI 82 (559)
T ss_pred cccCCcchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhhCC----------ChHHHHHHHHHH
Confidence 4467799999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred hcccchhhhhhhccCccccCCcccchhhHHHHHHHhhhhcCCCcccccccChhhHHHHHhcCCCCCceEEEEecCceeec
Q 040403 120 HDRNETMYYKVLIANIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAEDRGEMKSMVYNWPAEQVDMIVVTDGSRILG 199 (623)
Q Consensus 120 ~~rNe~LFy~ll~~~~~e~lPivYTPtVg~ac~~~s~~~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILG 199 (623)
|+|||+||||++.+|++|+||||||||||+||++||++||+|||||||++|+|+|+++|+|||.++|++|||||||||||
T Consensus 83 ~~~Ne~Lfy~ll~~~~ee~lpivYTPtVg~ac~~~s~~~r~p~Gly~s~~drg~i~~~l~Nwp~~~v~viVVTDG~rILG 162 (559)
T PTZ00317 83 HDTNETLFYALLLKYLKELLPIIYTPTVGEACQNYSNLFQRDRGLYLSRAHKGKIREILKNWPYDNVDVIVITDGSRILG 162 (559)
T ss_pred hhcCchHHHHHHHhCHHHhcceecCcchHHHHHHHHhcccccCceEEeecCcchHHHHHhcCCccCceEEEEeccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccccchhhhHHHHHHhcCCCCCCeeeEEeeccCCccccccCcCCCCcCCCCCCchhhhHhHHHHHHHHHHhCCc
Q 040403 200 LGDLGVQGIGIAVGKLDLYVAAAGINPQRVLPIMIDVGTTNEKLLKDPLYLGLQEHRLDGDEYVSVIDEFMEAIFTRWPN 279 (623)
Q Consensus 200 LGDlG~~GmgI~iGKl~LY~a~gGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~Rv~g~~Y~~~vdefv~av~~~~P~ 279 (623)
|||||++|||||+||++|||+||||||++|||||||||||||+||+||+||||||+|++|++||+|+||||++|+++||+
T Consensus 163 LGDlG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~R~~g~eY~~f~defv~av~~~~P~ 242 (559)
T PTZ00317 163 LGDLGANGMGISIGKLSLYVAGGGINPSRVLPVVLDVGTNNEKLLNDPLYLGLREKRLDDDEYYELLDEFMEAVSSRWPN 242 (559)
T ss_pred cCCcccccccccccHHHHHHhhcCCChhhccceEEecCCChhhhccCcccccccCCCCChhhHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccCCCchHHHHHHHHhccCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHH
Q 040403 280 VIVQFEDFQSKWAFKLLQRYRYKYRMFNDDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 280 ~lIqfEDf~~~nAf~lL~ryr~~~~~FNDDiQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~ 359 (623)
++||||||+++|||++|+|||+++|||||||||||+|+|||||||+|++|++ |+||||||+|||+||+|||+||+++
T Consensus 243 ~~Iq~EDf~~~naf~iL~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~---l~d~riv~~GAGsAgiGia~ll~~~ 319 (559)
T PTZ00317 243 AVVQFEDFSNNHCFDLLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVP---PEEQRIVFFGAGSAAIGVANNIADL 319 (559)
T ss_pred eEEehhhcCCccHHHHHHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCC---hhhcEEEEECCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHhcCCCcchhhhccCeEEEEccCCcccCCCCC-CChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCC
Q 040403 360 MARMLGNNESAFDSARSQFWVVDAKGLITEDREN-IDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVG 438 (623)
Q Consensus 360 m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~-l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~ 438 (623)
|+++ |+|+ |||++||||||++|||+++|.+ |+++|++||+++++.. .....+|+|||+.+|||||||+|+++
T Consensus 320 m~~~-Gls~---eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~---~~~~~~L~e~v~~~KPtvLIG~S~~~ 392 (559)
T PTZ00317 320 AAEY-GVTR---EEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAE---DSSLKTLEDVVRFVKPTALLGLSGVG 392 (559)
T ss_pred HHHc-CCCh---hHhcCeEEEEcCCCeEeCCCCccccHHHHHHhccccccc---cccCCCHHHHHhccCCCEEEEecCCC
Confidence 9998 9999 9999999999999999999976 9999999998642200 11257999999999999999999999
Q ss_pred CCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCccccCCCeeccCCCCccccchhHHH
Q 040403 439 GLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGSPFKDVDLGNGHIGHCNQGNNMYLFPGVG 518 (623)
Q Consensus 439 g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~Grai~AtGsPF~pv~~~~G~~~~p~Q~NN~yiFPGig 518 (623)
|+||||||++| +++|+|||||||||||++|||||||||+||+|||||||||||+||+| +||+++||||||+|||||||
T Consensus 393 g~Ft~evv~~M-a~~~~rPIIFaLSNPt~~aE~tpeda~~~T~Grai~AtGspf~pv~~-~G~~~~p~Q~NN~~iFPGig 470 (559)
T PTZ00317 393 GVFTEEVVKTM-ASNVERPIIFPLSNPTSKAECTAEDAYKWTNGRAIVASGSPFPPVTL-NGKTIQPSQGNNLYVFPGVG 470 (559)
T ss_pred CCCCHHHHHHH-HhcCCCCEEEECCCCCCCCCcCHHHHHhhccCCEEEEECCCCCCccc-CCeeeccCcCcceeeccchh
Confidence 99999999999 99999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHcCCcccCHHHHHHHHHHHHcccCcccccCCccccCCCCcccchHHHHHHHHHHHHHcCccccccCccchhcccCC
Q 040403 519 LGTLLSGSRIISDGMLQAAAECLAEYMTEEEVVKGKIYPSISSIRNITKEVAAAVVKEALEEDLAEGYRGVDARELQRFN 598 (623)
Q Consensus 519 lG~~~~~a~~Itd~m~~aAA~aLA~~v~~~~l~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~GlA~~~~~~~~~~~p~~~ 598 (623)
||+++++|++|||+||++||++||+++++++++.+.|||+++++|+||.+||.||+++|+++|+|+.. ..|+ .
T Consensus 471 lG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aV~~~A~~~G~A~~~------~~~~-~ 543 (559)
T PTZ00317 471 LGCAIAQPSYIPDEMLIAAAASLATLVSEEDLREGKLYPPLEDIREISAHIAVDVIEEAQEMGIAKNK------DLPD-N 543 (559)
T ss_pred hhhHhhcccCCCHHHHHHHHHHHHhhCCccccCCCeeeCCCccHhHHHHHHHHHHHHHHHHhCCCccC------CCCC-C
Confidence 99999999999999999999999999999999999999999999999999999999999999999720 1232 2
Q ss_pred HHHHHHHHHhCCcccC
Q 040403 599 QEELLEFVELNMWHPE 614 (623)
Q Consensus 599 ~~dl~~~I~~~mw~P~ 614 (623)
++|+++||+++||+|.
T Consensus 544 ~~~~~~~i~~~~w~P~ 559 (559)
T PTZ00317 544 RDELLALVKDRMWVPK 559 (559)
T ss_pred HHHHHHHHHhcCcCCC
Confidence 5799999999999994
No 4
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=7.7e-205 Score=1664.94 Aligned_cols=541 Identities=58% Similarity=0.953 Sum_probs=529.4
Q ss_pred cccccccccCCCCCcCCCCCHHHhhhcccCCCCCCcccCHHHHHHHHHHHHhhhhcccCCCCCCCChhhHHHHHHHhhcc
Q 040403 43 HKRSLDILHDPWFNKGTAFSMTERDRLDLRGLLPPNVMSTDQQIERFMVDLKRLEVQARDGPTDPNALAKWRILNRLHDR 122 (623)
Q Consensus 43 ~~~g~~ll~~p~~NKGtAFt~~ER~~l~L~GLLPp~v~tle~Q~~r~~~~~~~~~~~~~~~~~~~~~l~ky~~L~~L~~r 122 (623)
..+|.++|+||.+|||||||.+||++|||+|||||+|+|+|+|++|||.||++++ ++|+||+||++||+|
T Consensus 39 ~~~G~~ll~~p~~NKgtaFt~~ER~~lgl~GLlP~~v~t~e~Q~~R~~~~~~~~~----------~~l~ky~~L~~L~~~ 108 (581)
T PLN03129 39 VASGYDLLRDPRYNKGLAFTETERDRLGLRGLLPPAVLSQELQVKRFMENLRALE----------SPLAKYRALMDLQER 108 (581)
T ss_pred CCcchhhhcCcccccccCCCHHHHhhcCCccCCCCCcCCHHHHHHHHHHHHhccC----------CcHHHHHHHHHHHhh
Confidence 5689999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred cchhhhhhhccCccccCCcccchhhHHHHHHHhhhhcCCCcccccccChhhHHHHHhcCCCCCceEEEEecCceeeccCC
Q 040403 123 NETMYYKVLIANIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAEDRGEMKSMVYNWPAEQVDMIVVTDGSRILGLGD 202 (623)
Q Consensus 123 Ne~LFy~ll~~~~~e~lPivYTPtVg~ac~~~s~~~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGD 202 (623)
||+||||++++|++|+||||||||||+||++||++||+|||||||++|+|+|+++++|||.++|++||||||||||||||
T Consensus 109 Ne~Lfy~ll~~~~~e~lpiiYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGD 188 (581)
T PLN03129 109 NERLFYRVLIDNIEELLPIVYTPTVGEACQKYGSLFRRPRGLYISLKDKGRVLSMLKNWPERDVQVIVVTDGERILGLGD 188 (581)
T ss_pred CcccchhhhhcCHHHhCCeeeCCcHHHHHHHHHHhhcCCCceeecccCHHHHHHHHhcCCCcCceEEEEecCcceeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccchhhhHHHHHHhcCCCCCCeeeEEeeccCCccccccCcCCCCcCCCCCCchhhhHhHHHHHHHHHHhC-Ccee
Q 040403 203 LGVQGIGIAVGKLDLYVAAAGINPQRVLPIMIDVGTTNEKLLKDPLYLGLQEHRLDGDEYVSVIDEFMEAIFTRW-PNVI 281 (623)
Q Consensus 203 lG~~GmgI~iGKl~LY~a~gGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~Rv~g~~Y~~~vdefv~av~~~~-P~~l 281 (623)
||++|||||+||++|||+||||||++|||||||+|||||+||+||+||||||+|++|++||+|+||||++|+++| |+++
T Consensus 189 lG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~LL~DP~YlG~r~~Rv~g~eY~~~~defv~av~~~fGp~~~ 268 (581)
T PLN03129 189 LGVQGMGIPVGKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLRQPRLTGEEYDELVDEFMEAVKQRWGPKVL 268 (581)
T ss_pred cCCCccccchhHHHHHHhhcCCChhhccceEEecCCCchhhccCccccCcCCCCCchhhHHHhHHHHHHHHHHHhCCccE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred eecccCCCchHHHHHHHHhccCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHH
Q 040403 282 VQFEDFQSKWAFKLLQRYRYKYRMFNDDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMA 361 (623)
Q Consensus 282 IqfEDf~~~nAf~lL~ryr~~~~~FNDDiQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~ 361 (623)
||||||+++|||+||+|||+++|||||||||||+|+|||||||+|++|++ |+||||||+|||+||+|||+||+++|+
T Consensus 269 I~~EDf~~~~af~iL~ryr~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~---l~d~riv~~GAGsAgigia~ll~~~~~ 345 (581)
T PLN03129 269 VQFEDFANKNAFRLLQRYRTTHLCFNDDIQGTAAVALAGLLAALRATGGD---LADQRILFAGAGEAGTGIAELIALAMS 345 (581)
T ss_pred EehhhcCCccHHHHHHHhccCCCEeccccchHHHHHHHHHHHHHHHhCCc---hhhceEEEECCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HhcCCCcchhhhccCeEEEEccCCcccCCCCC-CChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCC
Q 040403 362 RMLGNNESAFDSARSQFWVVDAKGLITEDREN-IDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGL 440 (623)
Q Consensus 362 ~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~-l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~ 440 (623)
++.|+|+ |||++||||||++|||+++|++ |+++|++||++. .+.++|+|+|+.+|||||||+|+++|+
T Consensus 346 ~~~Gls~---eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~--------~~~~~L~e~v~~vkptvLIG~S~~~g~ 414 (581)
T PLN03129 346 RQTGISE---EEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDH--------EPGASLLEAVKAIKPTVLIGLSGVGGT 414 (581)
T ss_pred hhcCCCh---hhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhc--------ccCCCHHHHHhccCCCEEEEecCCCCC
Confidence 8559999 9999999999999999999987 999999999752 346789999999999999999999999
Q ss_pred CCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCccccCCCeeccCCCCccccchhHHHHH
Q 040403 441 FSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGSPFKDVDLGNGHIGHCNQGNNMYLFPGVGLG 520 (623)
Q Consensus 441 Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~Grai~AtGsPF~pv~~~~G~~~~p~Q~NN~yiFPGiglG 520 (623)
||||||++| +++|+|||||||||||++|||||||||+||+|||||||||||+||+| +||+++||||||+|||||||||
T Consensus 415 Ft~evi~~M-a~~~~rPIIFaLSNPt~~~E~~pe~a~~~T~G~ai~AtGSPf~pv~~-~Gr~~~p~Q~NN~~iFPGiglG 492 (581)
T PLN03129 415 FTKEVLEAM-ASLNERPIIFALSNPTSKAECTAEEAYTWTGGRAIFASGSPFDPVEY-NGKTFHPGQANNAYIFPGIGLG 492 (581)
T ss_pred CCHHHHHHH-HhcCCCCEEEECCCCCCCcCcCHHHHHHhhcCCEEEEeCCCCCCeee-CCeeecCccccceeeccchhhH
Confidence 999999999 99999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHcCCcccCHHHHHHHHHHHHcccCcccccCCccccCCCCcccchHHHHHHHHHHHHHcCccccccCccchhcccCCHH
Q 040403 521 TLLSGSRIISDGMLQAAAECLAEYMTEEEVVKGKIYPSISSIRNITKEVAAAVVKEALEEDLAEGYRGVDARELQRFNQE 600 (623)
Q Consensus 521 ~~~~~a~~Itd~m~~aAA~aLA~~v~~~~l~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~GlA~~~~~~~~~~~p~~~~~ 600 (623)
+++++|++|||+||++||++||++++++++..+.|||++++||+||.+||.||+++|+++|+|+ ..+. |+
T Consensus 493 al~~~a~~Itd~m~~aAA~aLA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~G~A~--------~~~~--~~ 562 (581)
T PLN03129 493 ALLSGAIRVTDDMLLAAAEALAAQVTEEELAKGAIYPPFSRIRDISAHVAAAVAAKAYEEGLAT--------RLPR--PE 562 (581)
T ss_pred HHhcCCcCCCHHHHHHHHHHHHHhCCcccCCCCeecCCCcchhHHHHHHHHHHHHHHHHcCCCC--------CCCC--HH
Confidence 9999999999999999999999999999999999999999999999999999999999999998 2443 78
Q ss_pred HHHHHHHhCCcccCCCCCc
Q 040403 601 ELLEFVELNMWHPEYPTLV 619 (623)
Q Consensus 601 dl~~~I~~~mw~P~Y~~~v 619 (623)
++.+||+++||+|+|++++
T Consensus 563 ~~~~~i~~~mw~P~Y~~~~ 581 (581)
T PLN03129 563 DLVEYAESCMYSPVYRPYR 581 (581)
T ss_pred HHHHHHHHcCcCCCCCCCC
Confidence 9999999999999999874
No 5
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=100.00 E-value=4e-118 Score=944.72 Aligned_cols=427 Identities=37% Similarity=0.540 Sum_probs=383.8
Q ss_pred ccCHHHHHHHHHHHHhhhhcccCCCCCCCC-hhhHHHHHHHhhcccchhhhhhhccCccccCCcccchhhHHHHHHHhhh
Q 040403 79 VMSTDQQIERFMVDLKRLEVQARDGPTDPN-ALAKWRILNRLHDRNETMYYKVLIANIEEYAPIVYTPTVGLVCQNYSGL 157 (623)
Q Consensus 79 v~tle~Q~~r~~~~~~~~~~~~~~~~~~~~-~l~ky~~L~~L~~rNe~LFy~ll~~~~~e~lPivYTPtVg~ac~~~s~~ 157 (623)
++|+| |.+|.+.++..+. + .|++|.|+ ++|+++||.++-.|..|+|||+||||||++|++|++.
T Consensus 1 v~t~~-q~~~~~~~~~~~~----------~~aL~~h~~~----~~gki~~~~~~~~~~~~dl~l~YTPgVa~~~~~i~~d 65 (432)
T COG0281 1 VETIE-QAERAYEQYEQLK----------TEALDKHEYL----DPGKILIYPTVPLHTQEDLPLAYTPGVAEACKAISED 65 (432)
T ss_pred CccHH-HHHHHHHHHhhhh----------hhhHHHhccC----CCCeEEEEEcccccCHhhcCcccCCchHHHHHHHHhC
Confidence 57899 9999999999887 5 99999999 8999999999999999999999999999999999998
Q ss_pred hcCCCcccccccChhhHHHHHhcCCCCCceEEEEecCceeeccCCCC-CccccchhhhHHHHHHhcCCCCCCeeeEEeec
Q 040403 158 FRRPRGMYFSAEDRGEMKSMVYNWPAEQVDMIVVTDGSRILGLGDLG-VQGIGIAVGKLDLYVAAAGINPQRVLPIMIDV 236 (623)
Q Consensus 158 ~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG-~~GmgI~iGKl~LY~a~gGI~P~~~lPI~LDv 236 (623)
|+.++ + ++.++++|||||||+||||||||| .+||+|++||++|||+||||| +||||||+
T Consensus 66 ~~~~~----~-------------yt~~~n~vaVvTDgtaVLGLGniGp~ag~pVmeGKa~Lfk~faGid---~~pI~ld~ 125 (432)
T COG0281 66 PRKAY----S-------------YTARGNLVAVVTDGTAVLGLGNIGPLAGKPVMEGKAVLFKAFAGID---VLPIELDV 125 (432)
T ss_pred cchhh----h-------------cCCCCceEEEEECCceeecccccccccCcchhhhHHHHHHHhcCCC---ceeeEeeC
Confidence 77776 2 334445999999999999999999 568999999999999999999 99999999
Q ss_pred cCCccccccCcCCCCcCCCCCCchhhhHhHHHHHHHHHHhCCceeeecccCCCchHHHHHHHHhccCCccccCcchhHHH
Q 040403 237 GTTNEKLLKDPLYLGLQEHRLDGDEYVSVIDEFMEAIFTRWPNVIVQFEDFQSKWAFKLLQRYRYKYRMFNDDVQGTAGV 316 (623)
Q Consensus 237 GTnN~~LL~DPlYlG~r~~Rv~g~~Y~~~vdefv~av~~~~P~~lIqfEDf~~~nAf~lL~ryr~~~~~FNDDiQGTaaV 316 (623)
||||+ +++||+++...||++.+|||||..-|+.+.+.|||.+||||||||||||+|
T Consensus 126 ~~~~e------------------------i~~~Vkal~p~FgginLedi~ap~cf~ie~~lr~~~~IPvFhDDqqGTaiv 181 (432)
T COG0281 126 GTNNE------------------------IIEFVKALEPTFGGINLEDIDAPRCFAIEERLRYRMNIPVFHDDQQGTAIV 181 (432)
T ss_pred CChHH------------------------HHHHHHHhhhcCCCcceeecccchhhHHHHHHhhcCCCCcccccccHHHHH
Confidence 99986 789999999999999988888877777777777788899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCC--
Q 040403 317 AVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENI-- 394 (623)
Q Consensus 317 ~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l-- 394 (623)
+|||||||||++|++ |+|+||||+|||+||+||++||+.+ |+++ ++||+|||+|+|+++|+++
T Consensus 182 ~lA~llnalk~~gk~---l~d~kiv~~GAGAAgiaia~~l~~~-----g~~~-------~~i~~~D~~G~l~~~r~~~~~ 246 (432)
T COG0281 182 TLAALLNALKLTGKK---LKDQKIVINGAGAAGIAIADLLVAA-----GVKE-------ENIFVVDRKGLLYDGREDLTM 246 (432)
T ss_pred HHHHHHHHHHHhCCC---ccceEEEEeCCcHHHHHHHHHHHHh-----CCCc-------ccEEEEecCCcccCCCccccc
Confidence 999999999999999 9999999999999999999999997 7764 8999999999999999885
Q ss_pred ChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHH
Q 040403 395 DPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPE 474 (623)
Q Consensus 395 ~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpe 474 (623)
++.|..+|. .++..|.. .+++. +||||||+|++ |+||+|+|++| +++|||||||||| +|++||
T Consensus 247 ~~~k~~~a~--~~~~~~~~------~~~~~--~adv~iG~S~~-G~~t~e~V~~M----a~~PiIfalaNP~--pEi~Pe 309 (432)
T COG0281 247 NQKKYAKAI--EDTGERTL------DLALA--GADVLIGVSGV-GAFTEEMVKEM----AKHPIIFALANPT--PEITPE 309 (432)
T ss_pred chHHHHHHH--hhhccccc------ccccc--CCCEEEEcCCC-CCcCHHHHHHh----ccCCEEeecCCCC--ccCCHH
Confidence 445555553 22222211 33555 99999999988 99999999999 6669999999999 999999
Q ss_pred HHhcccCCcEEEecCCCCCccccCCCeeccCCCCccccchhHHHHHHHHcCCcccCHHHHHHHHHHHHcccCcccccCCc
Q 040403 475 EAFSIVGDNIIFASGSPFKDVDLGNGHIGHCNQGNNMYLFPGVGLGTLLSGSRIISDGMLQAAAECLAEYMTEEEVVKGK 554 (623)
Q Consensus 475 da~~wT~Grai~AtGsPF~pv~~~~G~~~~p~Q~NN~yiFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v~~~~l~~g~ 554 (623)
||.+|++|++|+||||| ++|+|+||+|+|||||+|++++||++|||+|++|||+|||+++.++.+ .++
T Consensus 310 ~a~~~~~~aaivaTGrs-----------d~PnQvNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~AiA~~~~~~~~-~~~ 377 (432)
T COG0281 310 DAKEWGDGAAIVATGRS-----------DYPNQVNNVLIFPGIFRGALDVRAKTITDEMKIAAAEAIADLAREEVL-EEY 377 (432)
T ss_pred HHhhcCCCCEEEEeCCC-----------CCcccccceeEcchhhhhhHhhccccCCHHHHHHHHHHHHhhccccCC-cCC
Confidence 99999999999999975 677799999999999999999999999999999999999999987665 789
Q ss_pred cccCCCCcccchHHHHHHHHHHHHHcCccccccCccchhcccCCHHHHHHHHHhCCcccCCCCC
Q 040403 555 IYPSISSIRNITKEVAAAVVKEALEEDLAEGYRGVDARELQRFNQEELLEFVELNMWHPEYPTL 618 (623)
Q Consensus 555 l~P~~~~ir~vs~~VA~aVa~~A~~~GlA~~~~~~~~~~~p~~~~~dl~~~I~~~mw~P~Y~~~ 618 (623)
|+|+++++|.+|. ||.||+++|.++|+|+. |..+.+++.++++..+|.|.|.++
T Consensus 378 iiP~~~d~r~~~~-vA~AVa~aA~~~GvA~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 431 (432)
T COG0281 378 IIPPPFDPRVISR-VAVAVAKAAMEEGVARR---------PIDDEEAYEQALEARLWKPEYRMK 431 (432)
T ss_pred CCCCCCchhHHHH-HHHHHHHHHHHcCCccC---------CCCCHHHHHHHHHHHhcCcccccC
Confidence 9999999998888 99999999999999983 224477899999999999999875
No 6
>PRK12862 malic enzyme; Reviewed
Probab=100.00 E-value=5.8e-109 Score=939.70 Aligned_cols=368 Identities=32% Similarity=0.501 Sum_probs=337.7
Q ss_pred ccchhhhhhhccCccccCCcccchhhHHHHHHHhhhhcCCCcccccccChhhHHHHHhcCCCCCceEEEEecCceeeccC
Q 040403 122 RNETMYYKVLIANIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAEDRGEMKSMVYNWPAEQVDMIVVTDGSRILGLG 201 (623)
Q Consensus 122 rNe~LFy~ll~~~~~e~lPivYTPtVg~ac~~~s~~~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLG 201 (623)
+-|+. .++.+++ .++|.++|||||+++|+.+. ++|+++| .|+.+.+.++||||||||||||
T Consensus 26 k~~~~-~~~~~~~-~~dl~~~ytpgv~~~~~~i~---~~~~~~~--------------~~t~~~n~v~vvtdg~~vLGlG 86 (763)
T PRK12862 26 KIEIA-PTKPLAN-QRDLALAYSPGVAAPCLEIA---ADPANAA--------------RYTSRGNLVAVVSNGTAVLGLG 86 (763)
T ss_pred eEEEE-ecCCCCC-HHHceeeeCCchHHHHHHHH---hChHhhh--------------hcccCCcEEEEEechhhhcccc
Confidence 34444 6778888 89999999999999999964 6888877 3445566899999999999999
Q ss_pred CCCCcc-ccchhhhHHHHHHhcCCCCCCeeeEEeeccCCccccccCcCCCCcCCCCCCchhhhHhHHHHHHHHHHhCCc-
Q 040403 202 DLGVQG-IGIAVGKLDLYVAAAGINPQRVLPIMIDVGTTNEKLLKDPLYLGLQEHRLDGDEYVSVIDEFMEAIFTRWPN- 279 (623)
Q Consensus 202 DlG~~G-mgI~iGKl~LY~a~gGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~Rv~g~~Y~~~vdefv~av~~~~P~- 279 (623)
|+|++| ||||+||++|||+||||| ++ |+||||+ || ||||++|+.+||+
T Consensus 87 d~G~~~~~pv~egK~~l~~~~~gi~---~~----~i~~~~~----d~-------------------d~~v~~v~~~~p~f 136 (763)
T PRK12862 87 NIGPLASKPVMEGKAVLFKKFAGID---VF----DIELDES----DP-------------------DKLVEIVAALEPTF 136 (763)
T ss_pred ccCcccccchHHHHHHHHHhhcCCC---cc----ccccCCC----CH-------------------HHHHHHHHHhCCCc
Confidence 999997 999999999999999999 45 5555565 75 9999999999999
Q ss_pred eeeecccCCCchHHHHHHHHhcc--CCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHH
Q 040403 280 VIVQFEDFQSKWAFKLLQRYRYK--YRMFNDDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAAR 357 (623)
Q Consensus 280 ~lIqfEDf~~~nAf~lL~ryr~~--~~~FNDDiQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~ 357 (623)
++||||||+++|||+||+|||++ ||||||||||||+|+|||||||+|++|++ |+|+||||+|||+||+|||+||+
T Consensus 137 ~~i~~ED~~~~~~f~i~~~~~~~~~ip~f~DD~~GTa~v~la~l~~a~~~~~~~---~~~~~iv~~GaGaag~~~a~~l~ 213 (763)
T PRK12862 137 GGINLEDIKAPECFYIERELRERMKIPVFHDDQHGTAIIVAAALLNGLKLVGKD---IEDVKLVASGAGAAALACLDLLV 213 (763)
T ss_pred ceeeeecccCchHHHHHHHHHhcCCCceEecCcccHHHHHHHHHHHHHHHhCCC---hhhcEEEEEChhHHHHHHHHHHH
Confidence 69999999999999999999998 89999999999999999999999999999 99999999999999999999998
Q ss_pred HHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCC-CChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccC
Q 040403 358 KTMARMLGNNESAFDSARSQFWVVDAKGLITEDREN-IDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSA 436 (623)
Q Consensus 358 ~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~-l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~ 436 (623)
.+ |+++ +||||||++|||+++|++ |+++|++||+.+ + ..+|+|+|+ +||||||+|+
T Consensus 214 ~~-----G~~~-------~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~-~--------~~~l~e~~~--~~~v~iG~s~ 270 (763)
T PRK12862 214 SL-----GVKR-------ENIWVTDIKGVVYEGRTELMDPWKARYAQKT-D--------ARTLAEVIE--GADVFLGLSA 270 (763)
T ss_pred Hc-----CCCc-------ccEEEEcCCCeeeCCCCccccHHHHHHhhhc-c--------cCCHHHHHc--CCCEEEEcCC
Confidence 84 9975 899999999999999986 999999999753 2 258999999 6999999998
Q ss_pred CCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCccccCCCeeccCCCCccccchhH
Q 040403 437 VGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGSPFKDVDLGNGHIGHCNQGNNMYLFPG 516 (623)
Q Consensus 437 ~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~Grai~AtGsPF~pv~~~~G~~~~p~Q~NN~yiFPG 516 (623)
+|+||+|+|++| ++||||||||||| |||+||||++||+| +||||| |+++||||||+|+|||
T Consensus 271 -~g~~~~~~v~~M----~~~piifalsNP~--~E~~p~~a~~~~~~-~i~atG-----------rs~~p~Q~NN~~~FPg 331 (763)
T PRK12862 271 -AGVLKPEMVKKM----APRPLIFALANPT--PEILPEEARAVRPD-AIIATG-----------RSDYPNQVNNVLCFPY 331 (763)
T ss_pred -CCCCCHHHHHHh----ccCCEEEeCCCCc--ccCCHHHHHHhcCC-EEEEEC-----------CcCCCCcccceeeccc
Confidence 999999999999 6999999999999 89999999999998 999997 6899999999999999
Q ss_pred HHHHHHHcCCcccCHHHHHHHHHHHHcccCccc--------------ccCCccccCCCCcccchHHHHHHHHHHHHHcCc
Q 040403 517 VGLGTLLSGSRIISDGMLQAAAECLAEYMTEEE--------------VVKGKIYPSISSIRNITKEVAAAVVKEALEEDL 582 (623)
Q Consensus 517 iglG~~~~~a~~Itd~m~~aAA~aLA~~v~~~~--------------l~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~Gl 582 (623)
||+|+++++|++|||+|+++||++||+++++++ +..++|||+..+ ++||..||.||+++|+++|+
T Consensus 332 i~~g~l~~~a~~i~~~m~~aaa~ala~~~~~~~~~~~~~~~~~~~~~~~~~~i~P~~~~-~~v~~~va~aVa~~a~~~g~ 410 (763)
T PRK12862 332 IFRGALDVGATTINEEMKIAAVRAIAELAREEQSDVVAAAYGGEDLSFGPDYLIPKPFD-PRLILKIAPAVAQAAMDSGV 410 (763)
T ss_pred hhhhHHhcCCeeCCHHHHHHHHHHHHhcccccCCHHHHHhhccccccCCCCcccCCCCC-hhHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999873 445669997777 67999999999999999999
Q ss_pred cc
Q 040403 583 AE 584 (623)
Q Consensus 583 A~ 584 (623)
|+
T Consensus 411 a~ 412 (763)
T PRK12862 411 AT 412 (763)
T ss_pred CC
Confidence 98
No 7
>PRK12861 malic enzyme; Reviewed
Probab=100.00 E-value=9.8e-109 Score=933.06 Aligned_cols=369 Identities=30% Similarity=0.509 Sum_probs=336.2
Q ss_pred ccchhhhhhhccCccccCCcccchhhHHHHHHHhhhhcCCCcccccccChhhHHHHHhcCCCCCceEEEEecCceeeccC
Q 040403 122 RNETMYYKVLIANIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAEDRGEMKSMVYNWPAEQVDMIVVTDGSRILGLG 201 (623)
Q Consensus 122 rNe~LFy~ll~~~~~e~lPivYTPtVg~ac~~~s~~~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLG 201 (623)
+-|+. .++.+++ .++|.++|||||+++|++ |+++|+++| ++.+||+ .++||||||||||||
T Consensus 22 k~~~~-~~~~~~~-~~dl~l~YtPgVa~~c~~---i~~~p~~~~-~~t~r~n-------------~v~VvtdG~~vLGLG 82 (764)
T PRK12861 22 KISVV-ASKPLVT-QRDLALAYTPGVASACEE---IAADPLNAF-RFTSRGN-------------LVGVITNGTAVLGLG 82 (764)
T ss_pred eEEEE-eccccCC-hHHceeecCCchHHHHHH---HHhChHhhh-hhhccCc-------------EEEEEecchhhccCC
Confidence 34444 6777888 899999999999999999 568999985 5555444 699999999999999
Q ss_pred CCCCcc-ccchhhhHHHHHHhcCCCCCCeeeEEeeccCCccccccCcCCCCcCCCCCCchhhhHhHHHHHHHHHHhCCce
Q 040403 202 DLGVQG-IGIAVGKLDLYVAAAGINPQRVLPIMIDVGTTNEKLLKDPLYLGLQEHRLDGDEYVSVIDEFMEAIFTRWPNV 280 (623)
Q Consensus 202 DlG~~G-mgI~iGKl~LY~a~gGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~Rv~g~~Y~~~vdefv~av~~~~P~~ 280 (623)
|+|++| ||||+||++|||+||||| ++|+|||| +|| |+|| |||++++.+||+
T Consensus 83 diG~~a~~pvmeGK~~L~~~~agid-------~~di~~~~----~dp---------------d~~v-~~v~a~~~~fg~- 134 (764)
T PRK12861 83 NIGALASKPVMEGKAVLFKKFAGID-------VFDIEINE----TDP---------------DKLV-DIIAGLEPTFGG- 134 (764)
T ss_pred CcCcccccchHHHHHHHHhhccCCC-------ccccccCC----CCH---------------HHHH-HHHHHHHhhcCC-
Confidence 999998 999999999999999999 56667777 788 7899 999999999988
Q ss_pred eeecccCCCchHHHHHHHHhc--cCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHH
Q 040403 281 IVQFEDFQSKWAFKLLQRYRY--KYRMFNDDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARK 358 (623)
Q Consensus 281 lIqfEDf~~~nAf~lL~ryr~--~~~~FNDDiQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~ 358 (623)
||||||++||||+||+|||+ +||||||||||||+|+|||||||+|++|++ |+|+||||+|||+||+|||++|+.
T Consensus 135 -i~lED~~~p~~f~il~~~~~~~~ipvf~DD~qGTa~v~lA~llnal~~~gk~---l~d~~iv~~GAGaAg~~ia~~l~~ 210 (764)
T PRK12861 135 -INLEDIKAPECFTVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVGKS---IKEVKVVTSGAGAAALACLDLLVD 210 (764)
T ss_pred -ceeeeccCchHHHHHHHHHhcCCCCeeccccchHHHHHHHHHHHHHHHhCCC---hhHcEEEEECHhHHHHHHHHHHHH
Confidence 99999999999999999999 599999999999999999999999999999 999999999999999999999987
Q ss_pred HHHHhcCCCcchhhhccCeEEEEccCCcccCCCCC-CChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCC
Q 040403 359 TMARMLGNNESAFDSARSQFWVVDAKGLITEDREN-IDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAV 437 (623)
Q Consensus 359 ~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~-l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~ 437 (623)
. |+++ +||||||++|||+++|++ |+++|++||+.+ ...+|+|+|+ +||||||+|+
T Consensus 211 ~-----G~~~-------~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~---------~~~~L~eai~--~advliG~S~- 266 (764)
T PRK12861 211 L-----GLPV-------ENIWVTDIEGVVYRGRTTLMDPDKERFAQET---------DARTLAEVIG--GADVFLGLSA- 266 (764)
T ss_pred c-----CCCh-------hhEEEEcCCCeeeCCCcccCCHHHHHHHhhc---------CCCCHHHHHh--cCCEEEEcCC-
Confidence 3 9986 499999999999999987 999999999753 2258999999 6899999997
Q ss_pred CCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCccccCCCeeccCCCCccccchhHH
Q 040403 438 GGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGSPFKDVDLGNGHIGHCNQGNNMYLFPGV 517 (623)
Q Consensus 438 ~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~Grai~AtGsPF~pv~~~~G~~~~p~Q~NN~yiFPGi 517 (623)
+|+||+|+|++| ++||||||||||| |||+||||++ |+|++||||| |+++||||||+|+||||
T Consensus 267 ~g~ft~e~v~~M----a~~PIIFaLsNPt--pE~~pe~a~~-~~g~aivaTG-----------rs~~pnQ~NN~l~FPgi 328 (764)
T PRK12861 267 GGVLKAEMLKAM----AARPLILALANPT--PEIFPELAHA-TRDDVVIATG-----------RSDYPNQVNNVLCFPYI 328 (764)
T ss_pred CCCCCHHHHHHh----ccCCEEEECCCCC--ccCCHHHHHh-cCCCEEEEeC-----------CcCCCCccceeeecchh
Confidence 999999999999 6799999999999 8999999987 9999999996 68999999999999999
Q ss_pred HHHHHHcCCcccCHHHHHHHHHHHHcccCccccc--------------CCccccCCCCcccchHHHHHHHHHHHHHcCcc
Q 040403 518 GLGTLLSGSRIISDGMLQAAAECLAEYMTEEEVV--------------KGKIYPSISSIRNITKEVAAAVVKEALEEDLA 583 (623)
Q Consensus 518 glG~~~~~a~~Itd~m~~aAA~aLA~~v~~~~l~--------------~g~l~P~~~~ir~vs~~VA~aVa~~A~~~GlA 583 (623)
|+|+++++|++|||+|+++||++||+++++++++ ..+|+|+..+ ++||..||.||+++|+++|+|
T Consensus 329 ~~Gal~~~a~~I~~~M~~aAa~alA~~~~~~~~~~~~~~~~~~~~~~~~~~iiP~~~~-~~v~~~VA~aVa~~a~~~GvA 407 (764)
T PRK12861 329 FRGALDVGATTITREMEIAAVHAIAGLAEEEQNDVVAAAYGAYDVSFGPQYLIPKPFD-PRLIVRIAPAVAKAAMEGGVA 407 (764)
T ss_pred hHHHHHcCCccCCHHHHHHHHHHHHhhCCcccCHHHHHhhccccccCCCCCCCCCCCC-hhHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999987533 4455597666 579999999999999999999
Q ss_pred c
Q 040403 584 E 584 (623)
Q Consensus 584 ~ 584 (623)
+
T Consensus 408 ~ 408 (764)
T PRK12861 408 T 408 (764)
T ss_pred C
Confidence 8
No 8
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=100.00 E-value=1.4e-107 Score=924.12 Aligned_cols=368 Identities=32% Similarity=0.499 Sum_probs=339.6
Q ss_pred ccchhhhhhhccCccccCCcccchhhHHHHHHHhhhhcCCCcccccccChhhHHHHHhcCCCCCceEEEEecCceeeccC
Q 040403 122 RNETMYYKVLIANIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAEDRGEMKSMVYNWPAEQVDMIVVTDGSRILGLG 201 (623)
Q Consensus 122 rNe~LFy~ll~~~~~e~lPivYTPtVg~ac~~~s~~~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLG 201 (623)
+-++. .++.+++ .++|+++||||||++|+.+ +++|+++| ++.+||+ .++|||||+||||||
T Consensus 18 k~~~~-~~~~~~~-~~dl~~~Ytpgv~~~c~~i---~~~~~~~~-~~t~~~n-------------~v~vvtdg~~vLGlG 78 (752)
T PRK07232 18 KIEVT-PTKPLAT-QRDLSLAYSPGVAAPCLEI---AKDPADAY-KYTARGN-------------LVAVISNGTAVLGLG 78 (752)
T ss_pred eEEEE-eccccCC-hhhcceecCCchHHHHHHH---HhChhhcc-ccccCCc-------------EEEEEccchhhcccc
Confidence 33443 6777778 8999999999999999955 67999999 7777665 599999999999999
Q ss_pred CCCCc-cccchhhhHHHHHHhcCCCCCCeeeEEeeccCCccccccCcCCCCcCCCCCCchhhhHhHHHHHHHHHHhCCce
Q 040403 202 DLGVQ-GIGIAVGKLDLYVAAAGINPQRVLPIMIDVGTTNEKLLKDPLYLGLQEHRLDGDEYVSVIDEFMEAIFTRWPNV 280 (623)
Q Consensus 202 DlG~~-GmgI~iGKl~LY~a~gGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~Rv~g~~Y~~~vdefv~av~~~~P~~ 280 (623)
|+|++ ||||++||++|||+||||| ++ |+||||+ | +||||++|+.+||++
T Consensus 79 d~G~~a~~pv~egK~~l~~~~~gid---~~----~i~~~~~----d-------------------~de~v~~v~~~~p~~ 128 (752)
T PRK07232 79 NIGALASKPVMEGKGVLFKKFAGID---VF----DIEVDEE----D-------------------PDKFIEAVAALEPTF 128 (752)
T ss_pred ccccccCccHHHHHHHHHHhhcCCC---cc----ccccCCC----C-------------------HHHHHHHHHHhCCCc
Confidence 99999 7999999999999999999 45 5555565 4 799999999999997
Q ss_pred -eeecccCCCchHHHHHHHHhcc--CCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHH
Q 040403 281 -IVQFEDFQSKWAFKLLQRYRYK--YRMFNDDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAAR 357 (623)
Q Consensus 281 -lIqfEDf~~~nAf~lL~ryr~~--~~~FNDDiQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~ 357 (623)
+||||||++||||+||+|||++ ||||||||||||+|+|||||||+|++|++ |+|+||||+|||+||+|||+||+
T Consensus 129 g~i~~ED~~~p~~f~i~~~~~~~~~ip~f~DD~~GTa~v~lA~l~na~~~~~~~---~~~~~iv~~GaGaag~~~a~~l~ 205 (752)
T PRK07232 129 GGINLEDIKAPECFYIEEKLRERMDIPVFHDDQHGTAIISAAALLNALELVGKK---IEDVKIVVSGAGAAAIACLNLLV 205 (752)
T ss_pred cEEeeeecCCchHHHHHHHHHHhcCCCeeccccchHHHHHHHHHHHHHHHhCCC---hhhcEEEEECccHHHHHHHHHHH
Confidence 9999999999999999999997 89999999999999999999999999999 99999999999999999999998
Q ss_pred HHHHHhcCCCcchhhhccCeEEEEccCCcccCCCC-CCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccC
Q 040403 358 KTMARMLGNNESAFDSARSQFWVVDAKGLITEDRE-NIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSA 436 (623)
Q Consensus 358 ~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~-~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~ 436 (623)
.. |++ ++|||+||++|||+++|+ +|+++|++||+.+ +..+|+|+|+ +||||||+|+
T Consensus 206 ~~-----G~~-------~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~---------~~~~l~~~i~--~~~v~iG~s~ 262 (752)
T PRK07232 206 AL-----GAK-------KENIIVCDSKGVIYKGRTEGMDEWKAAYAVDT---------DARTLAEAIE--GADVFLGLSA 262 (752)
T ss_pred Hc-----CCC-------cccEEEEcCCCeecCCCcccccHHHHHHhccC---------CCCCHHHHHc--CCCEEEEcCC
Confidence 74 986 489999999999999994 5999999999742 2358999999 6999999998
Q ss_pred CCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCccccCCCeeccCCCCccccchhH
Q 040403 437 VGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGSPFKDVDLGNGHIGHCNQGNNMYLFPG 516 (623)
Q Consensus 437 ~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~Grai~AtGsPF~pv~~~~G~~~~p~Q~NN~yiFPG 516 (623)
+|+||+|+|++| ++||||||||||| |||+||||++||+| +||||| |+++||||||+|+|||
T Consensus 263 -~g~~~~~~v~~M----~~~piifalsNP~--~E~~p~~a~~~~~~-~i~atG-----------rs~~pnQ~NN~~~FPg 323 (752)
T PRK07232 263 -AGVLTPEMVKSM----ADNPIIFALANPD--PEITPEEAKAVRPD-AIIATG-----------RSDYPNQVNNVLCFPY 323 (752)
T ss_pred -CCCCCHHHHHHh----ccCCEEEecCCCC--ccCCHHHHHHhcCC-EEEEEC-----------CcCCCCcccceeecch
Confidence 999999999999 6899999999999 89999999999999 999997 6899999999999999
Q ss_pred HHHHHHHcCCcccCHHHHHHHHHHHHcccCcc--------------cccCCccccCCCCcccchHHHHHHHHHHHHHcCc
Q 040403 517 VGLGTLLSGSRIISDGMLQAAAECLAEYMTEE--------------EVVKGKIYPSISSIRNITKEVAAAVVKEALEEDL 582 (623)
Q Consensus 517 iglG~~~~~a~~Itd~m~~aAA~aLA~~v~~~--------------~l~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~Gl 582 (623)
||+|+++++|++|||+|+++||++||++++++ ++...+|+|+.++. +|+..||.||+++|+++|+
T Consensus 324 i~~g~l~~~a~~i~~~m~~aaa~ala~~~~~~~~~~~~~~~~~~~~~~~~~~iip~~~~~-~~~~~va~av~~~a~~~g~ 402 (752)
T PRK07232 324 IFRGALDVGATTINEEMKLAAVRAIAELAREEVSDEVAAAYGGQKLSFGPEYIIPKPFDP-RLIVKIAPAVAKAAMDSGV 402 (752)
T ss_pred hhHHHHHcCCccCCHHHHHHHHHHHHhhcccccchhhhhhhccccccCCCCccCCCCCCh-hHHHHHHHHHHHHHHhhCc
Confidence 99999999999999999999999999999986 67889999999996 5999999999999999999
Q ss_pred cc
Q 040403 583 AE 584 (623)
Q Consensus 583 A~ 584 (623)
|+
T Consensus 403 a~ 404 (752)
T PRK07232 403 AT 404 (752)
T ss_pred cc
Confidence 98
No 9
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=100.00 E-value=2.2e-97 Score=760.10 Aligned_cols=279 Identities=51% Similarity=0.862 Sum_probs=268.9
Q ss_pred cchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccC
Q 040403 310 VQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITE 389 (623)
Q Consensus 310 iQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~ 389 (623)
|||||+|+|||||||+|++|++ |+||||||+|||+||+|||+||+++|+++ |+|+ |||+++|||+|++|||++
T Consensus 1 IqGTa~V~lAgllnAlk~~g~~---l~d~~iv~~GAGsAg~gia~ll~~~~~~~-G~~~---eeA~~~i~~vD~~Gll~~ 73 (279)
T cd05312 1 IQGTAAVALAGLLAALRITGKP---LSDQRILFLGAGSAGIGIADLIVSAMVRE-GLSE---EEARKKIWLVDSKGLLTK 73 (279)
T ss_pred CchHHHHHHHHHHHHHHHhCCC---hhhcEEEEECcCHHHHHHHHHHHHHHHHc-CCCh---hhccCeEEEEcCCCeEeC
Confidence 8999999999999999999999 99999999999999999999999999998 9999 999999999999999999
Q ss_pred CCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCC
Q 040403 390 DRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNA 469 (623)
Q Consensus 390 ~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~ 469 (623)
+|++|+++|++||++.++ ...++|+|+|+++|||||||+|+++|+||+|+||+| ++||+|||||||||||+++
T Consensus 74 ~r~~l~~~~~~~a~~~~~------~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~M-a~~~~~PIIFaLSNPt~~~ 146 (279)
T cd05312 74 DRKDLTPFKKPFARKDEE------KEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAM-AKSNERPIIFALSNPTSKA 146 (279)
T ss_pred CCCcchHHHHHHHhhcCc------ccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHH-HhcCCCCEEEECCCcCCcc
Confidence 999999999999986432 246799999999999999999999999999999999 9999999999999999999
Q ss_pred CCCHHHHhcccCCcEEEecCCCCCccccCCCeeccCCCCccccchhHHHHHHHHcCCcccCHHHHHHHHHHHHcccCccc
Q 040403 470 ECTPEEAFSIVGDNIIFASGSPFKDVDLGNGHIGHCNQGNNMYLFPGVGLGTLLSGSRIISDGMLQAAAECLAEYMTEEE 549 (623)
Q Consensus 470 E~tpeda~~wT~Grai~AtGsPF~pv~~~~G~~~~p~Q~NN~yiFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v~~~~ 549 (623)
||||||||+||+|||||||||||+||+| +||+|+||||||+|+|||||||+++++|++|||+||++||++||+++++++
T Consensus 147 E~~pe~a~~~t~G~ai~ATGsPf~pv~~-~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~~~~~~ 225 (279)
T cd05312 147 ECTAEDAYKWTDGRALFASGSPFPPVEY-NGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLVTDEE 225 (279)
T ss_pred ccCHHHHHHhhcCCEEEEeCCCCCCeee-CCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHhCCccc
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCCcccchHHHHHHHHHHHHHcCccccccCccchhcccCCHHHHHHHHHhCCccc
Q 040403 550 VVKGKIYPSISSIRNITKEVAAAVVKEALEEDLAEGYRGVDARELQRFNQEELLEFVELNMWHP 613 (623)
Q Consensus 550 l~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~GlA~~~~~~~~~~~p~~~~~dl~~~I~~~mw~P 613 (623)
+..++|||+++++|+||.+||.||+++|+++|+|+. .++ ++|+++||+++||+|
T Consensus 226 l~~~~l~P~~~~~r~vs~~VA~aVa~~A~~~gla~~--------~~~--~~~~~~~i~~~~w~P 279 (279)
T cd05312 226 LARGRLYPPLSNIREISAQIAVAVAKYAYEEGLATR--------YPP--PEDLEEYVKSQMWEP 279 (279)
T ss_pred cCCCeeeCCCccHhHHHHHHHHHHHHHHHHcCCCCC--------CCC--HHHHHHHHHhCccCC
Confidence 999999999999999999999999999999999982 333 689999999999998
No 10
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=100.00 E-value=9.6e-95 Score=732.69 Aligned_cols=255 Identities=50% Similarity=0.833 Sum_probs=230.9
Q ss_pred cchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccC
Q 040403 310 VQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITE 389 (623)
Q Consensus 310 iQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~ 389 (623)
|||||+|+|||||||+|++|++ |+||||||+|||+||+|||+||+++|+++ |+|+ +||++||||+|++|||++
T Consensus 1 iqGTaaV~lAgll~Al~~~g~~---l~d~riv~~GAGsAg~gia~ll~~~~~~~-G~~~---~eA~~~i~lvD~~Gll~~ 73 (255)
T PF03949_consen 1 IQGTAAVVLAGLLNALRVTGKK---LSDQRIVFFGAGSAGIGIARLLVAAMVRE-GLSE---EEARKRIWLVDSKGLLTD 73 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHTS----GGG-EEEEEB-SHHHHHHHHHHHHHHHCT-TS-H---HHHHTTEEEEETTEEEBT
T ss_pred CchhHHHHHHHHHHHHHHhCCC---HHHcEEEEeCCChhHHHHHHHHHHHHHHh-cCCH---HHHhccEEEEeccceEec
Confidence 7999999999999999999999 99999999999999999999999999999 9999 999999999999999999
Q ss_pred CCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCC
Q 040403 390 DRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNA 469 (623)
Q Consensus 390 ~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~ 469 (623)
+|++|+++|++||++++++. ...+|+|+|+.+|||||||+|+++|+|||||||+| +++|||||||||||||+++
T Consensus 74 ~r~~l~~~~~~~a~~~~~~~-----~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~M-a~~~erPIIF~LSNPt~~a 147 (255)
T PF03949_consen 74 DREDLNPHKKPFARKTNPEK-----DWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAM-AKHNERPIIFPLSNPTPKA 147 (255)
T ss_dssp TTSSHSHHHHHHHBSSSTTT-------SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHC-HHHSSSEEEEE-SSSCGGS
T ss_pred cCccCChhhhhhhccCcccc-----cccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHH-hccCCCCEEEECCCCCCcc
Confidence 99999999999998765532 23789999999999999999999999999999999 9999999999999999999
Q ss_pred CCCHHHHhcccCCcEEEecCCCCCccccCCCeeccCCCCccccchhHHHHHHHHcCCcccCHHHHHHHHHHHHcccCccc
Q 040403 470 ECTPEEAFSIVGDNIIFASGSPFKDVDLGNGHIGHCNQGNNMYLFPGVGLGTLLSGSRIISDGMLQAAAECLAEYMTEEE 549 (623)
Q Consensus 470 E~tpeda~~wT~Grai~AtGsPF~pv~~~~G~~~~p~Q~NN~yiFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v~~~~ 549 (623)
||||||||+||+|+|||||||||+||+| +||+|+||||||+|||||||||+++++|++|||+||++||++||+++++++
T Consensus 148 E~~peda~~~t~g~ai~AtGSpf~pv~~-~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~aLA~~v~~~~ 226 (255)
T PF03949_consen 148 ECTPEDAYEWTDGRAIFATGSPFPPVEY-NGRSDYPNQCNNSYIFPGIGLGALDSRARRITDEMFLAAAEALADLVSEEE 226 (255)
T ss_dssp SS-HHHHHHTTTSEEEEEESS----EEE-TSCEESSCE-SGGGTHHHHHHHHHHCTBSS--HHHHHHHHHHHHHTSSHHH
T ss_pred cCCHHHHHhhCCceEEEecCCccCCeee-CCeEEecCCCCeeEeeccceeeeeecCCeecCHHHHHHHHHHHHHhCCccc
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCCcccchHHHHHHHHHHHH
Q 040403 550 VVKGKIYPSISSIRNITKEVAAAVVKEAL 578 (623)
Q Consensus 550 l~~g~l~P~~~~ir~vs~~VA~aVa~~A~ 578 (623)
+..++|||+++++|+||.+||.||+++||
T Consensus 227 ~~~~~l~P~~~~ir~vs~~VA~aVa~~Ai 255 (255)
T PF03949_consen 227 LAPGRLYPPLFDIREVSARVAAAVAKQAI 255 (255)
T ss_dssp HHTTBSS-SGGGHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccCCCCcHhHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999996
No 11
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=100.00 E-value=2.3e-91 Score=707.26 Aligned_cols=254 Identities=43% Similarity=0.705 Sum_probs=244.5
Q ss_pred cchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccC
Q 040403 310 VQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITE 389 (623)
Q Consensus 310 iQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~ 389 (623)
|||||+|+|||||||+|++|++ |+||||||+|||+||+|||+||+++|+++ |+|+ |||++|||+||++|||++
T Consensus 1 iqGTaaV~lAgllnAlk~~g~~---l~d~riv~~GAGsAg~gia~ll~~~~~~~-Gls~---e~A~~~i~~vD~~Gll~~ 73 (254)
T cd00762 1 IQGTASVAVAGLLAALKVTKKK---ISEHKVLFNGAGAAALGIANLIVXLXVKE-GISK---EEACKRIWXVDRKGLLVK 73 (254)
T ss_pred CchhHHHHHHHHHHHHHHhCCC---hhhcEEEEECcCHHHHHHHHHHHHHHHhc-CCCH---HHHhccEEEECCCCeEeC
Confidence 7999999999999999999999 99999999999999999999999999998 9999 999999999999999999
Q ss_pred CCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCC
Q 040403 390 DRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNA 469 (623)
Q Consensus 390 ~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~ 469 (623)
+|++++++|+++++-.++ ..+.++|+|+|+++|||||||+|+++|+||+|+|++| +++|+|||||||||||+++
T Consensus 74 ~r~~l~~~~~~~~~~~~~-----~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~M-a~~~~~PIIFaLSNPt~~a 147 (254)
T cd00762 74 NRKETCPNEYHLARFANP-----ERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAX-AEINERPVIFALSNPTSKA 147 (254)
T ss_pred CCCccCHHHHHHHHHcCc-----ccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHH-hhcCCCCEEEECCCcCCcc
Confidence 999999999994433233 3456899999999999999999999999999999999 9999999999999999999
Q ss_pred CCCHHHHhcccCCcEEEecCCCCCccccCCCeeccCCCCccccchhHHHHHHHHcCCcccCHHHHHHHHHHHHcccCccc
Q 040403 470 ECTPEEAFSIVGDNIIFASGSPFKDVDLGNGHIGHCNQGNNMYLFPGVGLGTLLSGSRIISDGMLQAAAECLAEYMTEEE 549 (623)
Q Consensus 470 E~tpeda~~wT~Grai~AtGsPF~pv~~~~G~~~~p~Q~NN~yiFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v~~~~ 549 (623)
||||||||+||+|||||||||||+||+| +||+|+|+||||+|||||||||+++++|++|||+||++||++||+++++++
T Consensus 148 E~tpe~a~~~t~G~ai~AtGspf~pv~~-~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~v~~~~ 226 (254)
T cd00762 148 ECTAEEAYTATEGRAIFASGSPFHPVEL-NGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSVTEES 226 (254)
T ss_pred ccCHHHHHhhcCCCEEEEECCCCCCccc-CCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHhhCChhc
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCCcccchHHHHHHHHHHH
Q 040403 550 VVKGKIYPSISSIRNITKEVAAAVVKEA 577 (623)
Q Consensus 550 l~~g~l~P~~~~ir~vs~~VA~aVa~~A 577 (623)
+..++|||++++||+||.+||.||+++|
T Consensus 227 l~~~~i~P~~~~ir~vs~~VA~aVa~~a 254 (254)
T cd00762 227 LKPGRLYPPLFDIQEVSLNIAVAVAKYA 254 (254)
T ss_pred CCCCceeCCcchhhhHHHHHHHHHHHhC
Confidence 9999999999999999999999999875
No 12
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=100.00 E-value=1.5e-82 Score=614.57 Aligned_cols=181 Identities=59% Similarity=1.115 Sum_probs=163.1
Q ss_pred hcccchhhhhhhccCccccCCcccchhhHHHHHHHhhhhcCCCcccccccChhhHHHHHhcCCCCCceEEEEecCceeec
Q 040403 120 HDRNETMYYKVLIANIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAEDRGEMKSMVYNWPAEQVDMIVVTDGSRILG 199 (623)
Q Consensus 120 ~~rNe~LFy~ll~~~~~e~lPivYTPtVg~ac~~~s~~~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILG 199 (623)
|+|||+|||+++.+|++|+||||||||||+||++||++||+|+|+|+|++|+|+|+++|+|||.++||+|||||||||||
T Consensus 1 q~~n~~Lfy~~l~~~~~e~lpivYTPtVg~ac~~~s~~~~~~~Gly~s~~d~g~i~~~l~n~~~~~v~v~VVTDG~rILG 80 (182)
T PF00390_consen 1 QDRNETLFYRLLSSHLEEMLPIVYTPTVGEACQNYSHLFRRPRGLYLSISDRGHIEEILRNWPERDVRVIVVTDGERILG 80 (182)
T ss_dssp HTTEHHHHHHHHHHTHHHHHHHHSTTCHHHHHHHHHHHGGCHHSCCCEGGGETCHHHHHTTSS-SS--EEEEE-SSSBTT
T ss_pred CCccEEEEEeehhhChHhhCceecCchHHHHHHHHHHhhccccceEEecCChHHHHHHHHhhhccCceEEEEeCchhhcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccccchhhhHHHHHHhcCCCCCCeeeEEeeccCCccccccCcCCCCcCCCCCCchhhhHhHHHHHHHHHHhC-C
Q 040403 200 LGDLGVQGIGIAVGKLDLYVAAAGINPQRVLPIMIDVGTTNEKLLKDPLYLGLQEHRLDGDEYVSVIDEFMEAIFTRW-P 278 (623)
Q Consensus 200 LGDlG~~GmgI~iGKl~LY~a~gGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~Rv~g~~Y~~~vdefv~av~~~~-P 278 (623)
|||+|++|||||+||++|||+||||||++||||||||||||++||+||+|+||||+|++|++|++||||||+||+++| |
T Consensus 81 lGD~G~~Gm~I~~GKl~ly~~~gGI~P~~~lPv~LDvGTnn~~ll~Dp~Y~G~r~~R~~g~~y~~fvdefv~av~~~~gp 160 (182)
T PF00390_consen 81 LGDLGVNGMGIPIGKLALYTACGGIDPSRCLPVCLDVGTNNEELLNDPLYLGLRHPRVRGEEYDEFVDEFVEAVKRRFGP 160 (182)
T ss_dssp TBS-GGGGHHHHHHHHHHHHHHHS-EGGGEEEEEEESBBS-HHHHH-TT--S-SSB---THHHHHHHHHHHHHHHHHHGC
T ss_pred ccCcCcceEEeeehhhhhHHhhcCcCcccccCeEeecCcchhhhccCcchhccccCCCChhhhhhCHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred ceeeecccCCCchHHHHHHHHh
Q 040403 279 NVIVQFEDFQSKWAFKLLQRYR 300 (623)
Q Consensus 279 ~~lIqfEDf~~~nAf~lL~ryr 300 (623)
+++||||||+++|||++|+|||
T Consensus 161 ~~~IqfEDf~~~nAf~iL~kYr 182 (182)
T PF00390_consen 161 NALIQFEDFSNPNAFRILDKYR 182 (182)
T ss_dssp TSEEEE-S--CCHHHHHHHHHT
T ss_pred CeEEEEecCCChhHHHHHHhcC
Confidence 9999999999999999999997
No 13
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=100.00 E-value=6.7e-57 Score=449.72 Aligned_cols=225 Identities=36% Similarity=0.525 Sum_probs=206.3
Q ss_pred cchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccC
Q 040403 310 VQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITE 389 (623)
Q Consensus 310 iQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~ 389 (623)
+||||+|++||+++|++..|++ ++++||||+|||+||.|||.+|... |++ +++||++|++||++.
T Consensus 1 ~qgt~~v~lAG~~~al~~~g~~---l~~~rvlvlGAGgAg~aiA~~L~~~-----G~~-------~~~i~ivdr~gl~~~ 65 (226)
T cd05311 1 QHGTAIVTLAGLLNALKLVGKK---IEEVKIVINGAGAAGIAIARLLLAA-----GAK-------PENIVVVDSKGVIYE 65 (226)
T ss_pred CCchHHHHHHHHHHHHHHhCCC---ccCCEEEEECchHHHHHHHHHHHHc-----CcC-------cceEEEEeCCCcccc
Confidence 6999999999999999999999 9999999999999999999999764 875 479999999999999
Q ss_pred CCCC-CChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCCC
Q 040403 390 DREN-IDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNN 468 (623)
Q Consensus 390 ~r~~-l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~ 468 (623)
+|.+ |.++|++|++.... .....+|.|+++ +||+|||+|+ +|.||+++++.| +++||||+||||+
T Consensus 66 ~r~~~L~~~~~~la~~~~~-----~~~~~~l~~~l~--~~dvlIgaT~-~G~~~~~~l~~m----~~~~ivf~lsnP~-- 131 (226)
T cd05311 66 GREDDLNPDKNEIAKETNP-----EKTGGTLKEALK--GADVFIGVSR-PGVVKKEMIKKM----AKDPIVFALANPV-- 131 (226)
T ss_pred ccchhhhHHHHHHHHHhcc-----CcccCCHHHHHh--cCCEEEeCCC-CCCCCHHHHHhh----CCCCEEEEeCCCC--
Confidence 9864 99999999975321 111147989998 6999999998 899999999999 6999999999999
Q ss_pred CCCCHHHHhcccCCcEEEecCCCCCccccCCCeeccCCCCccccchhHHHHHHHHcCCcccCHHHHHHHHHHHHcccCcc
Q 040403 469 AECTPEEAFSIVGDNIIFASGSPFKDVDLGNGHIGHCNQGNNMYLFPGVGLGTLLSGSRIISDGMLQAAAECLAEYMTEE 548 (623)
Q Consensus 469 ~E~tpeda~~wT~Grai~AtGsPF~pv~~~~G~~~~p~Q~NN~yiFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v~~~ 548 (623)
+||++++|++| |..||+|| +++.|+||||+|||||||||++++++++|||+||++||++||++++++
T Consensus 132 ~e~~~~~A~~~--ga~i~a~G-----------~~~~~~Q~nn~~~fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~~~ 198 (226)
T cd05311 132 PEIWPEEAKEA--GADIVATG-----------RSDFPNQVNNVLGFPGIFRGALDVRATKITEEMKLAAAEAIADLAEEE 198 (226)
T ss_pred CcCCHHHHHHc--CCcEEEeC-----------CCCCccccceeeecchhhHHHHHcCCcCCCHHHHHHHHHHHHhhCCcc
Confidence 79999999999 66699997 578999999999999999999999999999999999999999999999
Q ss_pred cccCCccccCCCCcccchHHHHHHHHHHH
Q 040403 549 EVVKGKIYPSISSIRNITKEVAAAVVKEA 577 (623)
Q Consensus 549 ~l~~g~l~P~~~~ir~vs~~VA~aVa~~A 577 (623)
++..+.|||++++ |+||..||.+|+++|
T Consensus 199 ~~~~~~~~P~~~~-~~~~~~va~~v~~~a 226 (226)
T cd05311 199 VLGEEYIIPTPFD-PRVVPRVATAVAKAA 226 (226)
T ss_pred ccCCCcccCCCCc-hhHHHHHHHHHHHhC
Confidence 9999999999999 899999999999875
No 14
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.75 E-value=1.2e-07 Score=81.50 Aligned_cols=86 Identities=24% Similarity=0.356 Sum_probs=76.2
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCC
Q 040403 312 GTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDR 391 (623)
Q Consensus 312 GTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r 391 (623)
+||.++++++..+.+..+.+ ++..+++|+|+|.+|.+++..+.+. |. ++++++|+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~---~~~~~v~i~G~G~~g~~~a~~l~~~-----~~---------~~v~v~~r-------- 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKS---LKGKTVVVLGAGEVGKGIAKLLADE-----GG---------KKVVLCDR-------- 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCC---CCCCEEEEECCCHHHHHHHHHHHHc-----CC---------CEEEEEcC--------
Confidence 68999999999999999988 9999999999999999999998774 42 56888877
Q ss_pred CCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecC
Q 040403 392 ENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMS 463 (623)
Q Consensus 392 ~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLS 463 (623)
|+||++++.++.|+++.++.| ++.|+||.++
T Consensus 56 -------------------------------------di~i~~~~~~~~~~~~~~~~~----~~~~~v~~~a 86 (86)
T cd05191 56 -------------------------------------DILVTATPAGVPVLEEATAKI----NEGAVVIDLA 86 (86)
T ss_pred -------------------------------------CEEEEcCCCCCCchHHHHHhc----CCCCEEEecC
Confidence 889999999999999867777 8999999875
No 15
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.74 E-value=0.0012 Score=73.10 Aligned_cols=120 Identities=21% Similarity=0.289 Sum_probs=85.0
Q ss_pred cCCccc----------cCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchh
Q 040403 302 KYRMFN----------DDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAF 371 (623)
Q Consensus 302 ~~~~FN----------DDiQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~ 371 (623)
.+|+|| |...||+--++-|+.. .++.. +.+.+++|+|+|..|.++|..+... |.
T Consensus 173 ~~Pv~~vn~s~~K~~~dn~~gt~~s~~~ai~r---at~~~---l~Gk~VlViG~G~IG~~vA~~lr~~-----Ga----- 236 (425)
T PRK05476 173 KFPAINVNDSVTKSKFDNRYGTGESLLDGIKR---ATNVL---IAGKVVVVAGYGDVGKGCAQRLRGL-----GA----- 236 (425)
T ss_pred CCCEEecCCcccCccccccHHHHhhhHHHHHH---hccCC---CCCCEEEEECCCHHHHHHHHHHHhC-----CC-----
Confidence 499998 6678888777666653 34666 8899999999999999999888763 72
Q ss_pred hhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHccc
Q 040403 372 DSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRG 451 (623)
Q Consensus 372 eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a 451 (623)
+++++|.+ +.+...|.. + .....++.++++ ..|++|-+++..++|+.+.++.|
T Consensus 237 -----~ViV~d~d-----------p~ra~~A~~--~-----G~~v~~l~eal~--~aDVVI~aTG~~~vI~~~~~~~m-- 289 (425)
T PRK05476 237 -----RVIVTEVD-----------PICALQAAM--D-----GFRVMTMEEAAE--LGDIFVTATGNKDVITAEHMEAM-- 289 (425)
T ss_pred -----EEEEEcCC-----------chhhHHHHh--c-----CCEecCHHHHHh--CCCEEEECCCCHHHHHHHHHhcC--
Confidence 58888863 122222221 1 112346888888 89999999888889999999999
Q ss_pred CCCCCCEEEecCCCC
Q 040403 452 STSTRPAIFAMSNPT 466 (623)
Q Consensus 452 ~~~erPIIFaLSNPt 466 (623)
.+.-|++-.+.+.
T Consensus 290 --K~GailiNvG~~d 302 (425)
T PRK05476 290 --KDGAILANIGHFD 302 (425)
T ss_pred --CCCCEEEEcCCCC
Confidence 3444555544443
No 16
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.72 E-value=0.00086 Score=73.90 Aligned_cols=130 Identities=21% Similarity=0.284 Sum_probs=96.5
Q ss_pred cCCccc----------cCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchh
Q 040403 302 KYRMFN----------DDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAF 371 (623)
Q Consensus 302 ~~~~FN----------DDiQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~ 371 (623)
.+|+|+ |...||+--++-+++. .++.. +.+.+++|+|+|..|.++|..+... |.
T Consensus 163 ~~Pv~~vnds~~K~~~dn~~g~g~s~~~~i~r---~t~~~---l~GktVvViG~G~IG~~va~~ak~~-----Ga----- 226 (413)
T cd00401 163 KFPAINVNDSVTKSKFDNLYGCRESLIDGIKR---ATDVM---IAGKVAVVAGYGDVGKGCAQSLRGQ-----GA----- 226 (413)
T ss_pred CCCEEEecchhhcccccccchhchhhHHHHHH---hcCCC---CCCCEEEEECCCHHHHHHHHHHHHC-----CC-----
Confidence 478774 6678999888877765 55667 8899999999999999999887664 73
Q ss_pred hhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHccc
Q 040403 372 DSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRG 451 (623)
Q Consensus 372 eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a 451 (623)
+++++|.+ +.+..+|+. . .-...++.++++ +.|++|-+++.+++|+++.++.|
T Consensus 227 -----~ViV~d~d-----------~~R~~~A~~--~-----G~~~~~~~e~v~--~aDVVI~atG~~~~i~~~~l~~m-- 279 (413)
T cd00401 227 -----RVIVTEVD-----------PICALQAAM--E-----GYEVMTMEEAVK--EGDIFVTTTGNKDIITGEHFEQM-- 279 (413)
T ss_pred -----EEEEEECC-----------hhhHHHHHh--c-----CCEEccHHHHHc--CCCEEEECCCCHHHHHHHHHhcC--
Confidence 47777763 334455542 1 112235678887 78999999998899999999999
Q ss_pred CCCCCCEEEecCCCCCCCCCCHHHHhc
Q 040403 452 STSTRPAIFAMSNPTNNAECTPEEAFS 478 (623)
Q Consensus 452 ~~~erPIIFaLSNPt~~~E~tpeda~~ 478 (623)
...-+|.-.+.+. .|+.+.+...
T Consensus 280 --k~GgilvnvG~~~--~eId~~~L~~ 302 (413)
T cd00401 280 --KDGAIVCNIGHFD--VEIDVKGLKE 302 (413)
T ss_pred --CCCcEEEEeCCCC--CccCHHHHHh
Confidence 5566776777663 6888887665
No 17
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.39 E-value=0.0031 Score=69.43 Aligned_cols=129 Identities=22% Similarity=0.287 Sum_probs=91.2
Q ss_pred cCCccc----------cCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchh
Q 040403 302 KYRMFN----------DDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAF 371 (623)
Q Consensus 302 ~~~~FN----------DDiQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~ 371 (623)
.+|+|+ |.-.||+--++-+++ |.++.. +.+.+++|+|.|..|.++|..+... |.
T Consensus 156 ~~Pvi~vnds~~K~~fDn~yg~g~s~~~~i~---r~t~~~---l~Gk~VvViG~G~IG~~vA~~ak~~-----Ga----- 219 (406)
T TIGR00936 156 KFPAINVNDAYTKSLFDNRYGTGQSTIDGIL---RATNLL---IAGKTVVVAGYGWCGKGIAMRARGM-----GA----- 219 (406)
T ss_pred CCcEEEecchhhchhhhcccccchhHHHHHH---HhcCCC---CCcCEEEEECCCHHHHHHHHHHhhC-----cC-----
Confidence 588886 667899977776655 456766 8899999999999999999887753 63
Q ss_pred hhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHccc
Q 040403 372 DSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRG 451 (623)
Q Consensus 372 eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a 451 (623)
+++++|.+ +.+...|+. + .....++.|+++ +.|++|-+++..++++++.+..|
T Consensus 220 -----~ViV~d~d-----------p~r~~~A~~--~-----G~~v~~leeal~--~aDVVItaTG~~~vI~~~~~~~m-- 272 (406)
T TIGR00936 220 -----RVIVTEVD-----------PIRALEAAM--D-----GFRVMTMEEAAK--IGDIFITATGNKDVIRGEHFENM-- 272 (406)
T ss_pred -----EEEEEeCC-----------hhhHHHHHh--c-----CCEeCCHHHHHh--cCCEEEECCCCHHHHHHHHHhcC--
Confidence 47778763 122223321 1 112235788887 78999988888888999999999
Q ss_pred CCCCCCEEEecCCCCCCCCCCHHHHh
Q 040403 452 STSTRPAIFAMSNPTNNAECTPEEAF 477 (623)
Q Consensus 452 ~~~erPIIFaLSNPt~~~E~tpeda~ 477 (623)
.+.-||.-.+-.. .|+.-++..
T Consensus 273 --K~GailiN~G~~~--~eId~~aL~ 294 (406)
T TIGR00936 273 --KDGAIVANIGHFD--VEIDVKALE 294 (406)
T ss_pred --CCCcEEEEECCCC--ceeCHHHHH
Confidence 5556777667664 455555443
No 18
>PLN02494 adenosylhomocysteinase
Probab=97.21 E-value=0.007 Score=67.87 Aligned_cols=125 Identities=18% Similarity=0.247 Sum_probs=92.2
Q ss_pred cCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcc
Q 040403 308 DDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLI 387 (623)
Q Consensus 308 DDiQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi 387 (623)
|-..||+--++-|++ |.++.. +...+++|+|.|..|.++|..+... |. +++++|.+
T Consensus 231 Dn~yGtgqS~~d~i~---r~t~i~---LaGKtVvViGyG~IGr~vA~~aka~-----Ga----------~VIV~e~d--- 286 (477)
T PLN02494 231 DNLYGCRHSLPDGLM---RATDVM---IAGKVAVICGYGDVGKGCAAAMKAA-----GA----------RVIVTEID--- 286 (477)
T ss_pred hccccccccHHHHHH---HhcCCc---cCCCEEEEECCCHHHHHHHHHHHHC-----CC----------EEEEEeCC---
Confidence 446788888888777 567777 8999999999999999999998653 73 47777763
Q ss_pred cCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCC
Q 040403 388 TEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTN 467 (623)
Q Consensus 388 ~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~ 467 (623)
+.+...|.. + .-...++.|+++ +.|++|=+++..++++++.++.| .+.-++.-.+.+.
T Consensus 287 --------p~r~~eA~~--~-----G~~vv~leEal~--~ADVVI~tTGt~~vI~~e~L~~M----K~GAiLiNvGr~~- 344 (477)
T PLN02494 287 --------PICALQALM--E-----GYQVLTLEDVVS--EADIFVTTTGNKDIIMVDHMRKM----KNNAIVCNIGHFD- 344 (477)
T ss_pred --------chhhHHHHh--c-----CCeeccHHHHHh--hCCEEEECCCCccchHHHHHhcC----CCCCEEEEcCCCC-
Confidence 222223321 1 111236889888 78999988877788999999999 6777888888865
Q ss_pred CCCCCHHHHhcc
Q 040403 468 NAECTPEEAFSI 479 (623)
Q Consensus 468 ~~E~tpeda~~w 479 (623)
.|+.-++..++
T Consensus 345 -~eID~~aL~~~ 355 (477)
T PLN02494 345 -NEIDMLGLETY 355 (477)
T ss_pred -CccCHHHHhhc
Confidence 67777766655
No 19
>PLN02477 glutamate dehydrogenase
Probab=97.00 E-value=0.036 Score=61.35 Aligned_cols=193 Identities=19% Similarity=0.204 Sum_probs=128.9
Q ss_pred CCchhhhHhHHHHHHHHHHhC-CceeeecccCCCchH--HHHHHHHhcc----------CCc----cccCcchhHHHHHH
Q 040403 257 LDGDEYVSVIDEFMEAIFTRW-PNVIVQFEDFQSKWA--FKLLQRYRYK----------YRM----FNDDVQGTAGVAVA 319 (623)
Q Consensus 257 v~g~~Y~~~vdefv~av~~~~-P~~lIqfEDf~~~nA--f~lL~ryr~~----------~~~----FNDDiQGTaaV~lA 319 (623)
.+..|-..|...|+.++.... |..-|-=+|.+..-. --+.+.|+.- -|+ -.+--.-||-=+..
T Consensus 112 ~s~~e~e~l~r~f~~~l~~~iG~~~DipapDvgt~~~~M~w~~d~y~~~~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv~~ 191 (410)
T PLN02477 112 LSESELERLTRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKFHGFSPAVVTGKPIDLGGSLGREAATGRGVVF 191 (410)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCHHHHHHHHHHHHHhhCCCCceEeCCCcccCCCCCCCccchHHHHH
Confidence 456788889999999998876 665566678866422 1245677651 111 12233458888888
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEE-EEccCCcccCCCCCCChhh
Q 040403 320 GLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFW-VVDAKGLITEDRENIDPDA 398 (623)
Q Consensus 320 gll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~-lvD~~GLi~~~r~~l~~~~ 398 (623)
++-.+++..|.+ |++.||+|.|.|..|.+.|++|.+. |. +|+ +.|++|-|++.. .|+...
T Consensus 192 ~~~~~~~~~g~~---l~g~~VaIqGfGnVG~~~A~~L~e~-----Ga----------kVVaVsD~~G~iy~~~-GLD~~~ 252 (410)
T PLN02477 192 ATEALLAEHGKS---IAGQTFVIQGFGNVGSWAAQLIHEK-----GG----------KIVAVSDITGAVKNEN-GLDIPA 252 (410)
T ss_pred HHHHHHHHcCCC---ccCCEEEEECCCHHHHHHHHHHHHc-----CC----------EEEEEECCCCeEECCC-CCCHHH
Confidence 888999998988 9999999999999999999988764 73 455 899999998854 354322
Q ss_pred H-HhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCC-CCCCCCCCHHHH
Q 040403 399 K-PFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSN-PTNNAECTPEEA 476 (623)
Q Consensus 399 ~-~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSN-Pt~~~E~tpeda 476 (623)
. .+.+....+..+......+-.+++. .+.||||=+. .++..|++.+..+ .-.||.--+| |+ -+| +++.
T Consensus 253 L~~~k~~~g~l~~~~~a~~i~~~e~l~-~~~DvliP~A-l~~~I~~~na~~i-----~ak~I~egAN~p~-t~e--a~~~ 322 (410)
T PLN02477 253 LRKHVAEGGGLKGFPGGDPIDPDDILV-EPCDVLIPAA-LGGVINKENAADV-----KAKFIVEAANHPT-DPE--ADEI 322 (410)
T ss_pred HHHHHHhcCchhccccceEecCcccee-ccccEEeecc-ccccCCHhHHHHc-----CCcEEEeCCCCCC-CHH--HHHH
Confidence 1 2211111111111111123334444 4899999776 6899999999987 4679999998 66 344 4455
Q ss_pred hc
Q 040403 477 FS 478 (623)
Q Consensus 477 ~~ 478 (623)
++
T Consensus 323 L~ 324 (410)
T PLN02477 323 LR 324 (410)
T ss_pred HH
Confidence 55
No 20
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.94 E-value=0.0086 Score=65.85 Aligned_cols=126 Identities=21% Similarity=0.302 Sum_probs=84.6
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCC
Q 040403 311 QGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITED 390 (623)
Q Consensus 311 QGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~ 390 (623)
.+.-++..+++--|.+..|. +.+.+++|+|+|..|..++..+... |. .+|+++|+..
T Consensus 158 ~~~vSv~~~Av~la~~~~~~----l~~~~VlViGaG~iG~~~a~~L~~~-----G~---------~~V~v~~rs~----- 214 (417)
T TIGR01035 158 AGAVSISSAAVELAERIFGS----LKGKKALLIGAGEMGELVAKHLLRK-----GV---------GKILIANRTY----- 214 (417)
T ss_pred CCCcCHHHHHHHHHHHHhCC----ccCCEEEEECChHHHHHHHHHHHHC-----CC---------CEEEEEeCCH-----
Confidence 45566666776666666654 5789999999999999998888653 74 5688888841
Q ss_pred CCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCC-CCCCHHHHHHcccCCCCCC-EEEecCCCCCC
Q 040403 391 RENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVG-GLFSKEVLEAMRGSTSTRP-AIFAMSNPTNN 468 (623)
Q Consensus 391 r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~-g~Ft~evv~~M~a~~~erP-IIFaLSNPt~~ 468 (623)
+....+|+.-.. . .-...++.+++. +.|++|-+++.+ ..+++++++.+ .....+| +|+-|++|-
T Consensus 215 -----~ra~~la~~~g~-~---~i~~~~l~~~l~--~aDvVi~aT~s~~~ii~~e~l~~~-~~~~~~~~~viDla~Pr-- 280 (417)
T TIGR01035 215 -----ERAEDLAKELGG-E---AVKFEDLEEYLA--EADIVISSTGAPHPIVSKEDVERA-LRERTRPLFIIDIAVPR-- 280 (417)
T ss_pred -----HHHHHHHHHcCC-e---EeeHHHHHHHHh--hCCEEEECCCCCCceEcHHHHHHH-HhcCCCCeEEEEeCCCC--
Confidence 112335532100 0 011235778887 799999987644 56899999987 3222356 889999998
Q ss_pred CCCCHH
Q 040403 469 AECTPE 474 (623)
Q Consensus 469 ~E~tpe 474 (623)
++.|+
T Consensus 281 -did~~ 285 (417)
T TIGR01035 281 -DVDPA 285 (417)
T ss_pred -CCChh
Confidence 55553
No 21
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.85 E-value=0.016 Score=58.70 Aligned_cols=138 Identities=18% Similarity=0.260 Sum_probs=95.7
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCC
Q 040403 313 TAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRE 392 (623)
Q Consensus 313 TaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~ 392 (623)
||-=+..++-.+++..+.+ |++.||+|.|-|..|.++|++|.+. |. +-+.+.|++|-++..
T Consensus 2 Tg~Gv~~~~~~~~~~~~~~---l~g~~vaIqGfGnVG~~~a~~L~~~-----G~---------~vV~vsD~~g~i~~~-- 62 (217)
T cd05211 2 TGYGVVVAMKAAMKHLGDS---LEGLTVAVQGLGNVGWGLAKKLAEE-----GG---------KVLAVSDPDGYIYDP-- 62 (217)
T ss_pred chhHHHHHHHHHHHHcCCC---cCCCEEEEECCCHHHHHHHHHHHHc-----CC---------EEEEEEcCCCcEECC--
Confidence 5555677778888988887 9999999999999999999999874 74 568899999999887
Q ss_pred CCChhh-HHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCC-CCCCCC
Q 040403 393 NIDPDA-KPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSN-PTNNAE 470 (623)
Q Consensus 393 ~l~~~~-~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSN-Pt~~~E 470 (623)
.|+..+ ..+.+.......+......+= +.+-.++.||||=++ ..+..|++..+.+ .-++|.--+| |++ +
T Consensus 63 Gld~~~l~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~DVlipaA-~~~~i~~~~a~~l-----~a~~V~e~AN~p~t--~ 133 (217)
T cd05211 63 GITTEELINYAVALGGSARVKVQDYFPG-EAILGLDVDIFAPCA-LGNVIDLENAKKL-----KAKVVAEGANNPTT--D 133 (217)
T ss_pred CCCHHHHHHHHHhhCCccccCcccccCc-ccceeccccEEeecc-ccCccChhhHhhc-----CccEEEeCCCCCCC--H
Confidence 565532 223322111111100011111 334455899999777 5789999999998 2778998888 874 2
Q ss_pred CCHHHHhcc
Q 040403 471 CTPEEAFSI 479 (623)
Q Consensus 471 ~tpeda~~w 479 (623)
.+++.++-
T Consensus 134 -~a~~~L~~ 141 (217)
T cd05211 134 -EALRILHE 141 (217)
T ss_pred -HHHHHHHH
Confidence 45566553
No 22
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=96.71 E-value=0.043 Score=53.69 Aligned_cols=122 Identities=20% Similarity=0.282 Sum_probs=78.1
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCC
Q 040403 311 QGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITED 390 (623)
Q Consensus 311 QGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~ 390 (623)
.||+--++-|++ |.++.. |...++|++|-|--|-|||+.+... | -++.++|.+
T Consensus 3 yG~g~S~~d~i~---r~t~~~---l~Gk~vvV~GYG~vG~g~A~~lr~~-----G----------a~V~V~e~D------ 55 (162)
T PF00670_consen 3 YGTGQSLVDGIM---RATNLM---LAGKRVVVIGYGKVGKGIARALRGL-----G----------ARVTVTEID------ 55 (162)
T ss_dssp HHHHHHHHHHHH---HHH-S-----TTSEEEEE--SHHHHHHHHHHHHT-----T-----------EEEEE-SS------
T ss_pred cccchhHHHHHH---hcCcee---eCCCEEEEeCCCcccHHHHHHHhhC-----C----------CEEEEEECC------
Confidence 477777777776 467787 9999999999999999999998874 7 467777763
Q ss_pred CCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCC
Q 040403 391 RENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAE 470 (623)
Q Consensus 391 r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E 470 (623)
+.+.-=|. .+ .-...+++|+++ .+|++|-+++..++.+.|.++.| .+.-|+.-..-= .-|
T Consensus 56 -----Pi~alqA~--~d-----Gf~v~~~~~a~~--~adi~vtaTG~~~vi~~e~~~~m----kdgail~n~Gh~--d~E 115 (162)
T PF00670_consen 56 -----PIRALQAA--MD-----GFEVMTLEEALR--DADIFVTATGNKDVITGEHFRQM----KDGAILANAGHF--DVE 115 (162)
T ss_dssp -----HHHHHHHH--HT-----T-EEE-HHHHTT--T-SEEEE-SSSSSSB-HHHHHHS-----TTEEEEESSSS--TTS
T ss_pred -----hHHHHHhh--hc-----CcEecCHHHHHh--hCCEEEECCCCccccCHHHHHHh----cCCeEEeccCcC--cee
Confidence 32222121 12 223456999999 89999999998899999999999 555566544432 257
Q ss_pred CCHHHHhcc
Q 040403 471 CTPEEAFSI 479 (623)
Q Consensus 471 ~tpeda~~w 479 (623)
+.-+..-+.
T Consensus 116 id~~~L~~~ 124 (162)
T PF00670_consen 116 IDVDALEAN 124 (162)
T ss_dssp BTHHHHHTC
T ss_pred Eeecccccc
Confidence 777665443
No 23
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.67 E-value=0.024 Score=59.59 Aligned_cols=138 Identities=17% Similarity=0.250 Sum_probs=92.1
Q ss_pred cchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccC
Q 040403 310 VQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITE 389 (623)
Q Consensus 310 iQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~ 389 (623)
+..+-.++=.++.-+++..+.. |.+.+++|+|+|..|..+|+.+... |. +++++|++.
T Consensus 127 ~~n~~~~Ae~ai~~al~~~~~~---l~gk~v~IiG~G~iG~avA~~L~~~-----G~----------~V~v~~R~~---- 184 (287)
T TIGR02853 127 IYNSIPTAEGAIMMAIEHTDFT---IHGSNVMVLGFGRTGMTIARTFSAL-----GA----------RVFVGARSS---- 184 (287)
T ss_pred EEccHhHHHHHHHHHHHhcCCC---CCCCEEEEEcChHHHHHHHHHHHHC-----CC----------EEEEEeCCH----
Confidence 3455556656666777777777 9999999999999999999998764 73 588888741
Q ss_pred CCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCC-CCCC
Q 040403 390 DRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSN-PTNN 468 (623)
Q Consensus 390 ~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSN-Pt~~ 468 (623)
+....... .... .-...+|.+.++ +.|++|=+. ..+.++++.++.| .+.-+|+=+|. |-
T Consensus 185 ------~~~~~~~~--~g~~---~~~~~~l~~~l~--~aDiVint~-P~~ii~~~~l~~~----k~~aliIDlas~Pg-- 244 (287)
T TIGR02853 185 ------ADLARITE--MGLI---PFPLNKLEEKVA--EIDIVINTI-PALVLTADVLSKL----PKHAVIIDLASKPG-- 244 (287)
T ss_pred ------HHHHHHHH--CCCe---eecHHHHHHHhc--cCCEEEECC-ChHHhCHHHHhcC----CCCeEEEEeCcCCC--
Confidence 11111110 0000 012234777887 899999755 4467899999999 45678886665 53
Q ss_pred CCCCHHHHhcccCCcEEEecCCC
Q 040403 469 AECTPEEAFSIVGDNIIFASGSP 491 (623)
Q Consensus 469 ~E~tpeda~~wT~Grai~AtGsP 491 (623)
++..+.|.+. .-+++.+-|-|
T Consensus 245 -~tdf~~Ak~~-G~~a~~~~glP 265 (287)
T TIGR02853 245 -GTDFEYAKKR-GIKALLAPGLP 265 (287)
T ss_pred -CCCHHHHHHC-CCEEEEeCCCC
Confidence 6666555443 34788888876
No 24
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.66 E-value=0.01 Score=64.02 Aligned_cols=129 Identities=19% Similarity=0.222 Sum_probs=86.1
Q ss_pred ceeeecccCCCchHHHHHHHHhccCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCc-chHHHHHHHHHH
Q 040403 279 NVIVQFEDFQSKWAFKLLQRYRYKYRMFNDDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGA-GSAGLGVLNAAR 357 (623)
Q Consensus 279 ~~lIqfEDf~~~nAf~lL~ryr~~~~~FNDDiQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GA-GsAg~GIA~ll~ 357 (623)
++-|.||||.+.|++ |+++...++--+.+..|.. |++.+++|.|| |+.|--++++|.
T Consensus 119 ~i~ie~~~~TtGNs~-------------------T~~ll~~~V~la~~~lg~~---l~~k~VLVtGAtG~IGs~lar~L~ 176 (340)
T PRK14982 119 NTTLEWERFTTGNTH-------------------TAYVICRQVEQNAPRLGID---LSKATVAVVGATGDIGSAVCRWLD 176 (340)
T ss_pred cceeccccccCCchh-------------------HHHHHHHHHHHhHHHhccC---cCCCEEEEEccChHHHHHHHHHHH
Confidence 344555557777776 6788888898999999988 99999999999 899999998887
Q ss_pred HHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCC
Q 040403 358 KTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAV 437 (623)
Q Consensus 358 ~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~ 437 (623)
.. .|. ++++++++. ...+...+..+. .....+|.+++. ++|++|=+++.
T Consensus 177 ~~----~gv---------~~lilv~R~------~~rl~~La~el~----------~~~i~~l~~~l~--~aDiVv~~ts~ 225 (340)
T PRK14982 177 AK----TGV---------AELLLVARQ------QERLQELQAELG----------GGKILSLEEALP--EADIVVWVASM 225 (340)
T ss_pred hh----CCC---------CEEEEEcCC------HHHHHHHHHHhc----------cccHHhHHHHHc--cCCEEEECCcC
Confidence 52 242 578888874 111211111221 112335788888 79999987776
Q ss_pred CCC--CCHHHHHHcccCCCCCCEEEecCCCCC
Q 040403 438 GGL--FSKEVLEAMRGSTSTRPAIFAMSNPTN 467 (623)
Q Consensus 438 ~g~--Ft~evv~~M~a~~~erPIIFaLSNPt~ 467 (623)
+.. .+++.+ .+.=+|+=++.|-.
T Consensus 226 ~~~~~I~~~~l-------~~~~~viDiAvPRD 250 (340)
T PRK14982 226 PKGVEIDPETL-------KKPCLMIDGGYPKN 250 (340)
T ss_pred CcCCcCCHHHh-------CCCeEEEEecCCCC
Confidence 433 566533 12235566888864
No 25
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.66 E-value=0.016 Score=63.66 Aligned_cols=120 Identities=19% Similarity=0.235 Sum_probs=78.7
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCC
Q 040403 312 GTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDR 391 (623)
Q Consensus 312 GTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r 391 (623)
+..+|+.+|+--+.+..| + +.+.+++|+|+|..|..++..+... |. ++|+++|+..
T Consensus 161 ~~~Sv~~~Av~~a~~~~~-~---~~~~~vlViGaG~iG~~~a~~L~~~-----G~---------~~V~v~~r~~------ 216 (423)
T PRK00045 161 GAVSVASAAVELAKQIFG-D---LSGKKVLVIGAGEMGELVAKHLAEK-----GV---------RKITVANRTL------ 216 (423)
T ss_pred CCcCHHHHHHHHHHHhhC-C---ccCCEEEEECchHHHHHHHHHHHHC-----CC---------CeEEEEeCCH------
Confidence 355666666554544444 4 6889999999999999998887642 74 5689888741
Q ss_pred CCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCC-CCCCHHHHHHcccCC--CCCCEEEecCCCC
Q 040403 392 ENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVG-GLFSKEVLEAMRGST--STRPAIFAMSNPT 466 (623)
Q Consensus 392 ~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~-g~Ft~evv~~M~a~~--~erPIIFaLSNPt 466 (623)
+....+|+.-.. . .....++.+++. +.|++|.+++.+ ..++++.++.+ .+. ....+|+=|++|-
T Consensus 217 ----~ra~~la~~~g~--~--~~~~~~~~~~l~--~aDvVI~aT~s~~~~i~~~~l~~~-~~~~~~~~~vviDla~Pr 283 (423)
T PRK00045 217 ----ERAEELAEEFGG--E--AIPLDELPEALA--EADIVISSTGAPHPIIGKGMVERA-LKARRHRPLLLVDLAVPR 283 (423)
T ss_pred ----HHHHHHHHHcCC--c--EeeHHHHHHHhc--cCCEEEECCCCCCcEEcHHHHHHH-HhhccCCCeEEEEeCCCC
Confidence 122335432100 0 011234667777 789999988755 46899999987 322 2345888999997
No 26
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.64 E-value=0.0055 Score=57.03 Aligned_cols=102 Identities=20% Similarity=0.326 Sum_probs=66.5
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLW 414 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~ 414 (623)
+++.|++|+|||.+|-+++..|... |. ++|++++|. .+..+.++..-.. ......
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~-----g~---------~~i~i~nRt----------~~ra~~l~~~~~~-~~~~~~ 64 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAAL-----GA---------KEITIVNRT----------PERAEALAEEFGG-VNIEAI 64 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHT-----TS---------SEEEEEESS----------HHHHHHHHHHHTG-CSEEEE
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHc-----CC---------CEEEEEECC----------HHHHHHHHHHcCc-ccccee
Confidence 8999999999999998888877764 75 679999984 1122334422100 000011
Q ss_pred CCCCHHHHHhhcCCcEEEeccCCC-CCCCHHHHHHcccCCCC-CCEEEecCCCCC
Q 040403 415 EGASLVEVVQQVKPDVLLGLSAVG-GLFSKEVLEAMRGSTST-RPAIFAMSNPTN 467 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLIG~S~~~-g~Ft~evv~~M~a~~~e-rPIIFaLSNPt~ 467 (623)
...++.+.++ +.|++|-+++.+ -.++++.++.. .. ..+||=||+|-.
T Consensus 65 ~~~~~~~~~~--~~DivI~aT~~~~~~i~~~~~~~~----~~~~~~v~Dla~Pr~ 113 (135)
T PF01488_consen 65 PLEDLEEALQ--EADIVINATPSGMPIITEEMLKKA----SKKLRLVIDLAVPRD 113 (135)
T ss_dssp EGGGHCHHHH--TESEEEE-SSTTSTSSTHHHHTTT----CHHCSEEEES-SS-S
T ss_pred eHHHHHHHHh--hCCeEEEecCCCCcccCHHHHHHH----HhhhhceeccccCCC
Confidence 2344667777 899999988765 37899988866 22 249999999974
No 27
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.54 E-value=0.059 Score=60.70 Aligned_cols=122 Identities=19% Similarity=0.206 Sum_probs=84.0
Q ss_pred cCCccccCcchhHHHH-------HHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhc
Q 040403 302 KYRMFNDDVQGTAGVA-------VAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSA 374 (623)
Q Consensus 302 ~~~~FNDDiQGTaaV~-------lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA 374 (623)
.+|++|-+--.|-.+. ++.+=+.+|.++.. |.+.+++|+|.|..|.++|..+... |.
T Consensus 215 ~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~~R~~~~~---LaGKtVgVIG~G~IGr~vA~rL~a~-----Ga-------- 278 (476)
T PTZ00075 215 LFPAINVNDSVTKSKFDNIYGCRHSLIDGIFRATDVM---IAGKTVVVCGYGDVGKGCAQALRGF-----GA-------- 278 (476)
T ss_pred CceEEEeCCcchHHHHHHHHHHHHHHHHHHHHhcCCC---cCCCEEEEECCCHHHHHHHHHHHHC-----CC--------
Confidence 4888876554443332 34444556777877 9999999999999999999988763 73
Q ss_pred cCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCC
Q 040403 375 RSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTS 454 (623)
Q Consensus 375 ~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~ 454 (623)
+++++|++- .+...|.. + .-...++.++++ ..|++|-+.+..++|+++.++.| .
T Consensus 279 --~ViV~e~dp-----------~~a~~A~~--~-----G~~~~~leell~--~ADIVI~atGt~~iI~~e~~~~M----K 332 (476)
T PTZ00075 279 --RVVVTEIDP-----------ICALQAAM--E-----GYQVVTLEDVVE--TADIFVTATGNKDIITLEHMRRM----K 332 (476)
T ss_pred --EEEEEeCCc-----------hhHHHHHh--c-----CceeccHHHHHh--cCCEEEECCCcccccCHHHHhcc----C
Confidence 477776631 11111211 1 112346889988 89999998888899999999999 4
Q ss_pred CCCEEEecCCC
Q 040403 455 TRPAIFAMSNP 465 (623)
Q Consensus 455 erPIIFaLSNP 465 (623)
+.-|+.-.+..
T Consensus 333 pGAiLINvGr~ 343 (476)
T PTZ00075 333 NNAIVGNIGHF 343 (476)
T ss_pred CCcEEEEcCCC
Confidence 55566655554
No 28
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.49 E-value=0.026 Score=59.59 Aligned_cols=137 Identities=18% Similarity=0.251 Sum_probs=87.2
Q ss_pred chHHHHHHHHhccCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcc
Q 040403 290 KWAFKLLQRYRYKYRMFNDDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNES 369 (623)
Q Consensus 290 ~nAf~lL~ryr~~~~~FNDDiQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~ 369 (623)
.+|+++=++.|.+.-+. .+-.+|+.+++-.|....|. +.+.+|+|+|+|..|..++..+... |.
T Consensus 139 ~~a~~~~k~vr~et~i~----~~~~sv~~~Av~~a~~~~~~----l~~~~V~ViGaG~iG~~~a~~L~~~-----g~--- 202 (311)
T cd05213 139 QKAIKVGKRVRTETGIS----RGAVSISSAAVELAEKIFGN----LKGKKVLVIGAGEMGELAAKHLAAK-----GV--- 202 (311)
T ss_pred HHHHHHHHHHhhhcCCC----CCCcCHHHHHHHHHHHHhCC----ccCCEEEEECcHHHHHHHHHHHHHc-----CC---
Confidence 57788878887765544 23445555555555555543 5789999999999999888887652 53
Q ss_pred hhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHc
Q 040403 370 AFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAM 449 (623)
Q Consensus 370 ~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M 449 (623)
++|+++|+. .+....+|+.-.. . .....++.++++ +.|++|-+++.+.. +++++.+
T Consensus 203 ------~~V~v~~r~----------~~ra~~la~~~g~---~-~~~~~~~~~~l~--~aDvVi~at~~~~~--~~~~~~~ 258 (311)
T cd05213 203 ------AEITIANRT----------YERAEELAKELGG---N-AVPLDELLELLN--EADVVISATGAPHY--AKIVERA 258 (311)
T ss_pred ------CEEEEEeCC----------HHHHHHHHHHcCC---e-EEeHHHHHHHHh--cCCEEEECCCCCch--HHHHHHH
Confidence 579999873 1222455542110 0 011134778887 78999998876655 6666655
Q ss_pred ccCCC-CCCEEEecCCCC
Q 040403 450 RGSTS-TRPAIFAMSNPT 466 (623)
Q Consensus 450 ~a~~~-erPIIFaLSNPt 466 (623)
-.... ..-+|+=||||-
T Consensus 259 ~~~~~~~~~~viDlavPr 276 (311)
T cd05213 259 MKKRSGKPRLIVDLAVPR 276 (311)
T ss_pred HhhCCCCCeEEEEeCCCC
Confidence 12222 234777899986
No 29
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.45 E-value=0.039 Score=58.14 Aligned_cols=128 Identities=20% Similarity=0.258 Sum_probs=83.6
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhH
Q 040403 320 GLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAK 399 (623)
Q Consensus 320 gll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~ 399 (623)
++..+++..+.. +.+.|++|+|+|.+|..++..+... | -+++++|++ +.+.
T Consensus 138 av~~a~~~~~~~---l~g~kvlViG~G~iG~~~a~~L~~~-----G----------a~V~v~~r~-----------~~~~ 188 (296)
T PRK08306 138 AIMMAIEHTPIT---IHGSNVLVLGFGRTGMTLARTLKAL-----G----------ANVTVGARK-----------SAHL 188 (296)
T ss_pred HHHHHHHhCCCC---CCCCEEEEECCcHHHHHHHHHHHHC-----C----------CEEEEEECC-----------HHHH
Confidence 455667777777 8999999999999999988887763 7 268888885 1223
Q ss_pred HhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcc
Q 040403 400 PFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSI 479 (623)
Q Consensus 400 ~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~w 479 (623)
..++.. ... .-...+|.+.++ +.|++|-++ ....++++.++.| .+..+|+=++... -.|..+.|.+
T Consensus 189 ~~~~~~-G~~---~~~~~~l~~~l~--~aDiVI~t~-p~~~i~~~~l~~~----~~g~vIIDla~~p--ggtd~~~a~~- 254 (296)
T PRK08306 189 ARITEM-GLS---PFHLSELAEEVG--KIDIIFNTI-PALVLTKEVLSKM----PPEALIIDLASKP--GGTDFEYAEK- 254 (296)
T ss_pred HHHHHc-CCe---eecHHHHHHHhC--CCCEEEECC-ChhhhhHHHHHcC----CCCcEEEEEccCC--CCcCeeehhh-
Confidence 333211 100 011235778888 899999875 4577899999999 5677888665433 2344444433
Q ss_pred cCC-cEEEecCCC
Q 040403 480 VGD-NIIFASGSP 491 (623)
Q Consensus 480 T~G-rai~AtGsP 491 (623)
.| +++.++|-|
T Consensus 255 -~Gv~~~~~~~lp 266 (296)
T PRK08306 255 -RGIKALLAPGLP 266 (296)
T ss_pred -CCeEEEEECCCC
Confidence 24 455567765
No 30
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.41 E-value=0.038 Score=56.35 Aligned_cols=131 Identities=16% Similarity=0.222 Sum_probs=91.0
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCC
Q 040403 311 QGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITED 390 (623)
Q Consensus 311 QGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~ 390 (623)
.-||-=+..++-.+++..+.. |++.||+|.|-|..|.++|++|.+. |. +=+.+.|++|-+++.
T Consensus 8 ~~Tg~Gv~~~~~~~~~~~~~~---l~~~~v~I~G~G~VG~~~a~~L~~~-----g~---------~vv~v~D~~g~~~~~ 70 (227)
T cd01076 8 EATGRGVAYATREALKKLGIG---LAGARVAIQGFGNVGSHAARFLHEA-----GA---------KVVAVSDSDGTIYNP 70 (227)
T ss_pred ccchHHHHHHHHHHHHhcCCC---ccCCEEEEECCCHHHHHHHHHHHHC-----CC---------EEEEEECCCCeEECC
Confidence 457777888888889988877 9999999999999999999998774 74 335599999999875
Q ss_pred CCCCChhhH-HhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCC-CC
Q 040403 391 RENIDPDAK-PFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSN-PT 466 (623)
Q Consensus 391 r~~l~~~~~-~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSN-Pt 466 (623)
.. |+.... .+.+.......+......+-.+++ ..+.||||=++ .++..|++.+..+ .-++|.--+| |+
T Consensus 71 ~G-ld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~-~~~~Dvlip~a-~~~~i~~~~~~~l-----~a~~I~egAN~~~ 140 (227)
T cd01076 71 DG-LDVPALLAYKKEHGSVLGFPGAERITNEELL-ELDCDILIPAA-LENQITADNADRI-----KAKIIVEAANGPT 140 (227)
T ss_pred CC-CCHHHHHHHHHhcCCcccCCCceecCCccce-eecccEEEecC-ccCccCHHHHhhc-----eeeEEEeCCCCCC
Confidence 43 443221 111111111111001111223333 45899999887 7899999999999 3789999999 55
No 31
>PRK14031 glutamate dehydrogenase; Provisional
Probab=96.26 E-value=0.26 Score=55.20 Aligned_cols=188 Identities=14% Similarity=0.132 Sum_probs=126.4
Q ss_pred CCchhhhHhHHHHHHHHHHhC-CceeeecccCCCch--HHHHHHHHhccC----Ccc----------ccCcchhHHHHHH
Q 040403 257 LDGDEYVSVIDEFMEAIFTRW-PNVIVQFEDFQSKW--AFKLLQRYRYKY----RMF----------NDDVQGTAGVAVA 319 (623)
Q Consensus 257 v~g~~Y~~~vdefv~av~~~~-P~~lIqfEDf~~~n--Af~lL~ryr~~~----~~F----------NDDiQGTaaV~lA 319 (623)
.+-.|...|.-.||..+.... |..-|-=+|++..- =--+.+.|+... -+| .+--..||-=++-
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~i~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~ 213 (444)
T PRK14031 134 KSNAEVMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGFMFGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIY 213 (444)
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHHHHHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHHH
Confidence 456778889999999999877 88888888987632 233667776431 222 2333568888888
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhH
Q 040403 320 GLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAK 399 (623)
Q Consensus 320 gll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~ 399 (623)
++..+++..|.+ |+++||+|-|.|..|...|+.|.+. |. +=+.+-|++|-|++.. .|+..+.
T Consensus 214 ~~~~~~~~~g~~---l~g~rVaVQGfGNVG~~aA~~L~e~-----GA---------kVVaVSD~~G~iy~~~-Gld~~~l 275 (444)
T PRK14031 214 FLMEMLKTKGTD---LKGKVCLVSGSGNVAQYTAEKVLEL-----GG---------KVVTMSDSDGYIYDPD-GIDREKL 275 (444)
T ss_pred HHHHHHHhcCCC---cCCCEEEEECCCHHHHHHHHHHHHC-----CC---------EEEEEECCCCeEECCC-CCCHHHH
Confidence 899999999998 9999999999999999999999874 84 3355799999888643 3665444
Q ss_pred HhHHHh----h-hhcccc---cCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCC-CC
Q 040403 400 PFARKV----N-EISRQG---LWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSN-PT 466 (623)
Q Consensus 400 ~fA~~~----~-~~~~~~---~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSN-Pt 466 (623)
.|-+.- + .+.... .....+-.+. -.++.|+||=+. ..+..|++.++.++++.+ -+|.--+| |+
T Consensus 276 ~~~~~~k~~~~~~v~~~~~~~ga~~i~~d~~-~~~~cDIliPaA-l~n~I~~~na~~l~a~g~--~~V~EgAN~P~ 347 (444)
T PRK14031 276 DYIMELKNLYRGRIREYAEKYGCKYVEGARP-WGEKGDIALPSA-TQNELNGDDARQLVANGV--IAVSEGANMPS 347 (444)
T ss_pred HHHHHHHhhcCCchhhhHhhcCCEEcCCccc-ccCCCcEEeecc-cccccCHHHHHHHHhcCC--eEEECCCCCCC
Confidence 332110 0 000000 0000111222 125789999766 579999999999954333 37777777 54
No 32
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.23 E-value=0.028 Score=59.21 Aligned_cols=153 Identities=12% Similarity=0.167 Sum_probs=97.7
Q ss_pred HHHHHHHHHhC--Cc---eeeecccCCCchHHHHHHHH---hc--cCCccccCcc------hhHHHHHHHHHHHHHHhCC
Q 040403 267 DEFMEAIFTRW--PN---VIVQFEDFQSKWAFKLLQRY---RY--KYRMFNDDVQ------GTAGVAVAGLLGAVRAQGR 330 (623)
Q Consensus 267 defv~av~~~~--P~---~lIqfEDf~~~nAf~lL~ry---r~--~~~~FNDDiQ------GTaaV~lAgll~A~r~~g~ 330 (623)
++|.+.+++.. |+ +.||.==-..-+..++++.. ++ -+.+.| +-+ +.+-.|-.|++..++..+.
T Consensus 77 ~~l~~~i~~Ln~d~~v~Gi~VqlPlp~~i~~~~~ld~I~~aKDVdg~n~~n-~G~l~~~~~~~~p~T~~gii~~L~~~~i 155 (283)
T PRK14192 77 EQLLAKIEELNANPDVHGILLQHPVPAQIDERACFDAISLAKDVDGVTCLG-FGRMAMGEAAYGSATPAGIMRLLKAYNI 155 (283)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCccccCHHHHHhccCHHHhcCCCCccc-cCccccCCCcccCCcHHHHHHHHHHcCC
Confidence 45666666654 43 46665322222222244444 22 133345 222 4467777999999999999
Q ss_pred CCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhc
Q 040403 331 SMIDFPKQKIVVAGAGS-AGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEIS 409 (623)
Q Consensus 331 ~~~~l~d~riv~~GAGs-Ag~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~ 409 (623)
+ ++.+++|++|+|- +|..||.+|... |. .+.+++++ +
T Consensus 156 ~---l~Gk~vvViG~gg~vGkpia~~L~~~-----ga----------tVtv~~~~-----------------t------- 193 (283)
T PRK14192 156 E---LAGKHAVVVGRSAILGKPMAMMLLNA-----NA----------TVTICHSR-----------------T------- 193 (283)
T ss_pred C---CCCCEEEEECCcHHHHHHHHHHHHhC-----CC----------EEEEEeCC-----------------c-------
Confidence 9 9999999999997 999999988753 52 57888762 0
Q ss_pred ccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEec-CCCC--CC-CCCCHHHHhc
Q 040403 410 RQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAM-SNPT--NN-AECTPEEAFS 478 (623)
Q Consensus 410 ~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaL-SNPt--~~-~E~tpeda~~ 478 (623)
.+|.+.++ +.|++|-+.+.++.|+.++++ +.-+|+=. .||. .. -++.+|++..
T Consensus 194 -------~~L~~~~~--~aDIvI~AtG~~~~v~~~~lk-------~gavViDvg~n~~~~~~~GDvd~~~~~~ 250 (283)
T PRK14192 194 -------QNLPELVK--QADIIVGAVGKPELIKKDWIK-------QGAVVVDAGFHPRDGGGVGDIELQGIEE 250 (283)
T ss_pred -------hhHHHHhc--cCCEEEEccCCCCcCCHHHcC-------CCCEEEEEEEeecCCCCcccccHHHhhc
Confidence 12556666 899999999999999987754 33455443 3663 11 1555555544
No 33
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=96.10 E-value=0.5 Score=53.17 Aligned_cols=188 Identities=15% Similarity=0.148 Sum_probs=123.4
Q ss_pred CCchhhhHhHHHHHHHHHHhC-CceeeecccCCCch--HHHHHHHHhcc---C-Cccc----------cCcchhHHHHHH
Q 040403 257 LDGDEYVSVIDEFMEAIFTRW-PNVIVQFEDFQSKW--AFKLLQRYRYK---Y-RMFN----------DDVQGTAGVAVA 319 (623)
Q Consensus 257 v~g~~Y~~~vdefv~av~~~~-P~~lIqfEDf~~~n--Af~lL~ryr~~---~-~~FN----------DDiQGTaaV~lA 319 (623)
.+..|-..|...||..+.+.. |+.-|-=.|++..- ---+.+.|+.- . .|+- +--..||-=++.
T Consensus 143 ~s~~El~r~~r~f~~eL~~~IGp~~DvpA~DvGt~~rem~~~~~~y~~~~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~~ 222 (454)
T PTZ00079 143 KSDNEVMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQYKKLRNNFEGTLTGKNVKWGGSNIRPEATGYGLVY 222 (454)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCccchhhcCCCHHHHHHHHHHHHHHhCCCCceeCCCCCCCCCCCCCCcccHHHHHH
Confidence 455677889999999998766 88888888988522 12245556531 1 1211 112237777888
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEE-EEccCCcccCCCCCCChhh
Q 040403 320 GLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFW-VVDAKGLITEDRENIDPDA 398 (623)
Q Consensus 320 gll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~-lvD~~GLi~~~r~~l~~~~ 398 (623)
++-.+++..|.+ |++.||+|-|.|..|...|+.|.+. |. +++ +.|++|-|++.. .|+..+
T Consensus 223 ~~~~~l~~~~~~---l~Gk~VaVqG~GnVg~~aa~~L~e~-----Ga----------kVVavSD~~G~iy~~~-Gld~~~ 283 (454)
T PTZ00079 223 FVLEVLKKLNDS---LEGKTVVVSGSGNVAQYAVEKLLQL-----GA----------KVLTMSDSDGYIHEPN-GFTKEK 283 (454)
T ss_pred HHHHHHHHcCCC---cCCCEEEEECCCHHHHHHHHHHHHC-----CC----------EEEEEEcCCCcEECCC-CCCHHH
Confidence 888999999998 9999999999999999999998774 73 455 999999999864 365444
Q ss_pred HHhHH-Hhhh----hccccc----CCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCC-CCC
Q 040403 399 KPFAR-KVNE----ISRQGL----WEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSN-PTN 467 (623)
Q Consensus 399 ~~fA~-~~~~----~~~~~~----~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSN-Pt~ 467 (623)
..+.. ..+. +..+.. ....+-.+ +-.++.||||=+.+ .+..|++-++.+ -+ +.-.+|.=-+| |++
T Consensus 284 l~~l~~~k~~~~g~i~~~~~~~~~a~~~~~~~-~~~~~cDI~iPcA~-~n~I~~~~a~~l-~~-~~ak~V~EgAN~p~t 358 (454)
T PTZ00079 284 LAYLMDLKNVKRGRLKEYAKHSSTAKYVPGKK-PWEVPCDIAFPCAT-QNEINLEDAKLL-IK-NGCKLVAEGANMPTT 358 (454)
T ss_pred HHHHHHHHhhcCCcHHhhhhccCCcEEeCCcC-cccCCccEEEeccc-cccCCHHHHHHH-HH-cCCeEEEecCCCCCC
Confidence 22111 0000 000000 00001111 22368999998774 699999999987 22 34568888888 663
No 34
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.92 E-value=0.33 Score=50.41 Aligned_cols=191 Identities=14% Similarity=0.187 Sum_probs=99.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHH-------hHHHhhhhcc
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKP-------FARKVNEISR 410 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~-------fA~~~~~~~~ 410 (623)
.+|.|+|+|..|.+||..+... | .+++++|.+- +.+...+.. +.+. ..+..
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-----G----------~~V~l~d~~~------~~l~~~~~~~~~~~~~~~~~-~~~~~ 61 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-----G----------FDVTIYDISD------EALEKAKERIAKLADRYVRD-LEATK 61 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-----C----------CeEEEEeCCH------HHHHHHHHHHHHHHHHHHHc-CCCCh
Confidence 4899999999999999888764 6 3588888641 111111111 1000 00000
Q ss_pred --------cccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccCC
Q 040403 411 --------QGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGD 482 (623)
Q Consensus 411 --------~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~G 482 (623)
.......++.++++ +.|++|=+-...-.+.+++++.. ........|+ .||.+++ .+.++.+.++-
T Consensus 62 ~~~~~~~~~~i~~~~d~~~a~~--~aDlVieavpe~~~~k~~~~~~l-~~~~~~~~ii-~sntSt~---~~~~~~~~~~~ 134 (287)
T PRK08293 62 EAPAEAALNRITLTTDLAEAVK--DADLVIEAVPEDPEIKGDFYEEL-AKVAPEKTIF-ATNSSTL---LPSQFAEATGR 134 (287)
T ss_pred hhhHHHHHcCeEEeCCHHHHhc--CCCEEEEeccCCHHHHHHHHHHH-HhhCCCCCEE-EECcccC---CHHHHHhhcCC
Confidence 00112467889888 78988865322122566777777 5555555555 3566554 44444443321
Q ss_pred cEEEecCCCCCccccCCCeeccCCCCccccchhHHHHHHHHcCCcccCHHHHHHHHHHHHcccCcccccCCccc-cCCCC
Q 040403 483 NIIFASGSPFKDVDLGNGHIGHCNQGNNMYLFPGVGLGTLLSGSRIISDGMLQAAAECLAEYMTEEEVVKGKIY-PSISS 561 (623)
Q Consensus 483 rai~AtGsPF~pv~~~~G~~~~p~Q~NN~yiFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v~~~~l~~g~l~-P~~~~ 561 (623)
..=|....||.|+.. .+ .. .+.....-+++.+. .+..+...+-.. --++ |...
T Consensus 135 ~~r~vg~Hf~~p~~~--~~--------lv----------evv~~~~t~~~~~~-~~~~~~~~~Gk~----pv~v~~d~p- 188 (287)
T PRK08293 135 PEKFLALHFANEIWK--NN--------TA----------EIMGHPGTDPEVFD-TVVAFAKAIGMV----PIVLKKEQP- 188 (287)
T ss_pred cccEEEEcCCCCCCc--CC--------eE----------EEeCCCCCCHHHHH-HHHHHHHHcCCe----EEEecCCCC-
Confidence 111333568877644 11 11 12222333556444 445555443211 1122 2333
Q ss_pred cccchHHHHHHHHHHH---HHcCccc
Q 040403 562 IRNITKEVAAAVVKEA---LEEDLAE 584 (623)
Q Consensus 562 ir~vs~~VA~aVa~~A---~~~GlA~ 584 (623)
-.|..++-.++...| +++|+|+
T Consensus 189 -gfi~nRi~~~~~~ea~~l~~~g~a~ 213 (287)
T PRK08293 189 -GYILNSLLVPFLSAALALWAKGVAD 213 (287)
T ss_pred -CHhHHHHHHHHHHHHHHHHHcCCCC
Confidence 246666666666666 4589987
No 35
>PRK09414 glutamate dehydrogenase; Provisional
Probab=95.85 E-value=0.26 Score=55.22 Aligned_cols=196 Identities=19% Similarity=0.204 Sum_probs=129.7
Q ss_pred CCchhhhHhHHHHHHHHHHhC-CceeeecccCCCchH--HHHHHHHhccC----------Ccc----ccCcchhHHHHHH
Q 040403 257 LDGDEYVSVIDEFMEAIFTRW-PNVIVQFEDFQSKWA--FKLLQRYRYKY----------RMF----NDDVQGTAGVAVA 319 (623)
Q Consensus 257 v~g~~Y~~~vdefv~av~~~~-P~~lIqfEDf~~~nA--f~lL~ryr~~~----------~~F----NDDiQGTaaV~lA 319 (623)
.+..|-..|...|+.++...+ |..-|-=+|++..-. --+.+.|+.-. ++. .+--..||-=+..
T Consensus 138 ~s~~Eler~~r~~~~~l~~~iG~~~DipapDvgt~~~~M~~~~d~y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~~ 217 (445)
T PRK09414 138 KSDAEIMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQYKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLVY 217 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcCccccCCCHHHHHHHHHHHHhhcCcceEEEecCCcccCCCCCCCCcccHHHHH
Confidence 456688889999999999988 888888888875322 22567776421 211 1233467777888
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEE-EccCCcccCCCCCCChhh
Q 040403 320 GLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWV-VDAKGLITEDRENIDPDA 398 (623)
Q Consensus 320 gll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~l-vD~~GLi~~~r~~l~~~~ 398 (623)
++..+++..|.+ |++.||+|.|-|..|...|++|.+. |. +|+- .|++|-|+... .|+...
T Consensus 218 ~~~~~~~~~~~~---l~g~rVaIqGfGnVG~~~A~~L~~~-----Ga----------kVVavsDs~G~iyn~~-GLD~~~ 278 (445)
T PRK09414 218 FAEEMLKARGDS---FEGKRVVVSGSGNVAIYAIEKAQQL-----GA----------KVVTCSDSSGYVYDEE-GIDLEK 278 (445)
T ss_pred HHHHHHHhcCCC---cCCCEEEEECCCHHHHHHHHHHHHC-----CC----------EEEEEEcCCceEECCC-CCCHHH
Confidence 888999988888 9999999999999999999999653 74 4554 49999998764 244321
Q ss_pred -HHhHHHh-hhhccccc---CCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCC-CCCCCCCC
Q 040403 399 -KPFARKV-NEISRQGL---WEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSN-PTNNAECT 472 (623)
Q Consensus 399 -~~fA~~~-~~~~~~~~---~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSN-Pt~~~E~t 472 (623)
..+.... ..+..+.. ....+- +.+-.++.||||=+. ..+..|++-...+ -. +.-.||.=-+| |+ -+|
T Consensus 279 L~~~k~~~~~~l~~~~~~~~~~~i~~-~~i~~~d~DVliPaA-l~n~It~~~a~~i-~~-~~akiIvEgAN~p~-t~~-- 351 (445)
T PRK09414 279 LKEIKEVRRGRISEYAEEFGAEYLEG-GSPWSVPCDIALPCA-TQNELDEEDAKTL-IA-NGVKAVAEGANMPS-TPE-- 351 (445)
T ss_pred HHHHHHhcCCchhhhhhhcCCeecCC-ccccccCCcEEEecC-CcCcCCHHHHHHH-HH-cCCeEEEcCCCCCC-CHH--
Confidence 1111100 01111100 001122 223456899999777 6899999999988 22 46789999998 76 233
Q ss_pred HHHHhc
Q 040403 473 PEEAFS 478 (623)
Q Consensus 473 peda~~ 478 (623)
+++++.
T Consensus 352 A~~~L~ 357 (445)
T PRK09414 352 AIEVFL 357 (445)
T ss_pred HHHHHH
Confidence 445554
No 36
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=95.81 E-value=0.089 Score=51.46 Aligned_cols=85 Identities=15% Similarity=0.255 Sum_probs=63.5
Q ss_pred HHHHhCCCCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhH
Q 040403 324 AVRAQGRSMIDFPKQKIVVAGAGS-AGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFA 402 (623)
Q Consensus 324 A~r~~g~~~~~l~d~riv~~GAGs-Ag~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA 402 (623)
.++-...+ |.+.+++|+|+|. .|..+|+.|... | .++++++++-
T Consensus 34 l~~~~~~~---l~gk~vlViG~G~~~G~~~a~~L~~~-----g----------~~V~v~~r~~----------------- 78 (168)
T cd01080 34 LLKRYGID---LAGKKVVVVGRSNIVGKPLAALLLNR-----N----------ATVTVCHSKT----------------- 78 (168)
T ss_pred HHHHcCCC---CCCCEEEEECCcHHHHHHHHHHHhhC-----C----------CEEEEEECCc-----------------
Confidence 33334455 9999999999997 598888888763 5 2588888740
Q ss_pred HHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCC
Q 040403 403 RKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPT 466 (623)
Q Consensus 403 ~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt 466 (623)
. .|.+.++ +.|++|.+++.+..|+++.++ +.-+|+=|+.|-
T Consensus 79 ---~-----------~l~~~l~--~aDiVIsat~~~~ii~~~~~~-------~~~viIDla~pr 119 (168)
T cd01080 79 ---K-----------NLKEHTK--QADIVIVAVGKPGLVKGDMVK-------PGAVVIDVGINR 119 (168)
T ss_pred ---h-----------hHHHHHh--hCCEEEEcCCCCceecHHHcc-------CCeEEEEccCCC
Confidence 1 2566677 899999999988899998653 235788888876
No 37
>PRK14030 glutamate dehydrogenase; Provisional
Probab=95.78 E-value=0.47 Score=53.30 Aligned_cols=197 Identities=14% Similarity=0.109 Sum_probs=128.6
Q ss_pred CCchhhhHhHHHHHHHHHHhC-CceeeecccCCCchH--HHHHHHHhcc----CCccc----------cCcchhHHHHHH
Q 040403 257 LDGDEYVSVIDEFMEAIFTRW-PNVIVQFEDFQSKWA--FKLLQRYRYK----YRMFN----------DDVQGTAGVAVA 319 (623)
Q Consensus 257 v~g~~Y~~~vdefv~av~~~~-P~~lIqfEDf~~~nA--f~lL~ryr~~----~~~FN----------DDiQGTaaV~lA 319 (623)
.+..|...|.-.||+.+.+.. |+.-|-=.|++..-. --+++.|+.- ..++. +--..||-=+..
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~DIpApDvgt~~~~M~w~~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~~ 213 (445)
T PRK14030 134 KSDAEIMRFCQAFMLELWRHIGPDTDVPAGDIGVGGREVGYMFGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGALY 213 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCHHHHHHHHHHHHhccCccccEEEccccccCCCCCCCCccHHHHHH
Confidence 455688889999999999544 887777788884331 1255667651 22221 111238888888
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhH
Q 040403 320 GLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAK 399 (623)
Q Consensus 320 gll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~ 399 (623)
++..+++..|.+ |++.||+|-|-|..|...|+.|.+. |. +=+-+-|++|-|++.. .|+..+.
T Consensus 214 ~~~~~~~~~g~~---l~g~~vaIQGfGnVG~~aA~~L~e~-----Ga---------kvVavSD~~G~i~d~~-Gld~~~l 275 (445)
T PRK14030 214 FVHQMLETKGID---IKGKTVAISGFGNVAWGAATKATEL-----GA---------KVVTISGPDGYIYDPD-GISGEKI 275 (445)
T ss_pred HHHHHHHHcCCC---cCCCEEEEECCCHHHHHHHHHHHHC-----CC---------EEEEEEcCCceEECCC-CCCHHHH
Confidence 888999999998 9999999999999999999999764 85 3477889999998754 3554432
Q ss_pred HhHHH-hhh---h-----cccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCC-CCCCC
Q 040403 400 PFARK-VNE---I-----SRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSN-PTNNA 469 (623)
Q Consensus 400 ~fA~~-~~~---~-----~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSN-Pt~~~ 469 (623)
.+... .+. . .........+-.+. -.++.||||=+. ..+..|++.++.+ . .+.-.||.=-+| |++ +
T Consensus 276 ~~l~~~k~~~~~~~~~~~~~~~ga~~i~~~~~-~~~~cDVliPcA-l~n~I~~~na~~l-~-~~~ak~V~EgAN~p~t-~ 350 (445)
T PRK14030 276 DYMLELRASGNDIVAPYAEKFPGSTFFAGKKP-WEQKVDIALPCA-TQNELNGEDADKL-I-KNGVLCVAEVSNMGCT-A 350 (445)
T ss_pred HHHHHHHHhcCccHHHHHhcCCCCEEcCCccc-eeccccEEeecc-ccccCCHHHHHHH-H-HcCCeEEEeCCCCCCC-H
Confidence 11100 000 0 00000000111222 246899999777 5799999999998 2 235778998998 553 3
Q ss_pred CCCHHHHhc
Q 040403 470 ECTPEEAFS 478 (623)
Q Consensus 470 E~tpeda~~ 478 (623)
| +++++.
T Consensus 351 e--A~~iL~ 357 (445)
T PRK14030 351 E--AIDKFI 357 (445)
T ss_pred H--HHHHHH
Confidence 3 445554
No 38
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=95.59 E-value=0.32 Score=50.82 Aligned_cols=134 Identities=11% Similarity=0.091 Sum_probs=90.3
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCC
Q 040403 312 GTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDR 391 (623)
Q Consensus 312 GTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r 391 (623)
.||-=+.-++-.+++..+.+ |++.||+|-|-|..|.+.|++|.+. |. +=+-+.|++|-|++..
T Consensus 16 aTg~Gv~~~~~~~~~~~~~~---l~g~~vaIqGfGnVG~~~a~~L~e~-----Ga---------kvvaVsD~~G~i~~~~ 78 (254)
T cd05313 16 ATGYGLVYFVEEMLKDRNET---LKGKRVAISGSGNVAQYAAEKLLEL-----GA---------KVVTLSDSKGYVYDPD 78 (254)
T ss_pred hhHHHHHHHHHHHHHhcCCC---cCCCEEEEECCCHHHHHHHHHHHHC-----CC---------EEEEEECCCceEECCC
Confidence 46766778888888888888 9999999999999999999999774 74 2244999999998864
Q ss_pred CCCChhhHH-hHH-Hh-hh--hcccc----cCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEec
Q 040403 392 ENIDPDAKP-FAR-KV-NE--ISRQG----LWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAM 462 (623)
Q Consensus 392 ~~l~~~~~~-fA~-~~-~~--~~~~~----~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaL 462 (623)
.|+..+.. +.+ +. +. +.... .....+-.|.. ..+.||||=+. ..+..|++.+..+ ..+.-.||.--
T Consensus 79 -Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~~-~~~~DIliPcA-l~~~I~~~na~~i--~~~~ak~I~Eg 153 (254)
T cd05313 79 -GFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKPW-EVPCDIAFPCA-TQNEVDAEDAKLL--VKNGCKYVAEG 153 (254)
T ss_pred -CCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcchh-cCCCcEEEecc-ccccCCHHHHHHH--HHcCCEEEEeC
Confidence 35433221 110 00 00 00000 00111222322 45899999776 6799999999998 12467899999
Q ss_pred CC-CCC
Q 040403 463 SN-PTN 467 (623)
Q Consensus 463 SN-Pt~ 467 (623)
+| |++
T Consensus 154 AN~p~t 159 (254)
T cd05313 154 ANMPCT 159 (254)
T ss_pred CCCCCC
Confidence 99 763
No 39
>PLN00203 glutamyl-tRNA reductase
Probab=95.53 E-value=0.095 Score=59.66 Aligned_cols=142 Identities=20% Similarity=0.246 Sum_probs=86.7
Q ss_pred chHHHHHHHHhccCCccccCcchhHHHHHHHHHHHHHHhCC-CCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCc
Q 040403 290 KWAFKLLQRYRYKYRMFNDDVQGTAGVAVAGLLGAVRAQGR-SMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNE 368 (623)
Q Consensus 290 ~nAf~lL~ryr~~~~~FNDDiQGTaaV~lAgll~A~r~~g~-~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~ 368 (623)
..||..=.|-|.+.-+ -.|--.|+-+|+=-|.++.|. + |.+.+|+|+|||..|..++..+... |.
T Consensus 225 ~~Ai~~~KrVRteT~I----~~~~vSv~s~Av~la~~~~~~~~---l~~kkVlVIGAG~mG~~~a~~L~~~-----G~-- 290 (519)
T PLN00203 225 KHAITAGKRVRTETNI----ASGAVSVSSAAVELALMKLPESS---HASARVLVIGAGKMGKLLVKHLVSK-----GC-- 290 (519)
T ss_pred HHHHHHHHHHhhccCC----CCCCcCHHHHHHHHHHHhcCCCC---CCCCEEEEEeCHHHHHHHHHHHHhC-----CC--
Confidence 3556665666654332 023334444555556666664 5 8899999999999998888777642 74
Q ss_pred chhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCC-CCCCHHHHH
Q 040403 369 SAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVG-GLFSKEVLE 447 (623)
Q Consensus 369 ~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~-g~Ft~evv~ 447 (623)
++|+++++. .+....|+..-.... .......++.+++. +.|++|.+++.+ ..|++++++
T Consensus 291 -------~~V~V~nRs----------~era~~La~~~~g~~-i~~~~~~dl~~al~--~aDVVIsAT~s~~pvI~~e~l~ 350 (519)
T PLN00203 291 -------TKMVVVNRS----------EERVAALREEFPDVE-IIYKPLDEMLACAA--EADVVFTSTSSETPLFLKEHVE 350 (519)
T ss_pred -------CeEEEEeCC----------HHHHHHHHHHhCCCc-eEeecHhhHHHHHh--cCCEEEEccCCCCCeeCHHHHH
Confidence 569998884 112233442110000 00112345778887 899999876543 579999999
Q ss_pred HcccCCC---CCC-EEEecCCCC
Q 040403 448 AMRGSTS---TRP-AIFAMSNPT 466 (623)
Q Consensus 448 ~M~a~~~---erP-IIFaLSNPt 466 (623)
.| -... .+| +|+=||.|-
T Consensus 351 ~~-~~~~~~~~~~~~~IDLAvPR 372 (519)
T PLN00203 351 AL-PPASDTVGGKRLFVDISVPR 372 (519)
T ss_pred Hh-hhcccccCCCeEEEEeCCCC
Confidence 98 2211 244 566799996
No 40
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=95.41 E-value=0.28 Score=48.89 Aligned_cols=123 Identities=18% Similarity=0.228 Sum_probs=81.2
Q ss_pred hhHHHHHHHHHHHHHHh--CCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccC
Q 040403 312 GTAGVAVAGLLGAVRAQ--GRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITE 389 (623)
Q Consensus 312 GTaaV~lAgll~A~r~~--g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~ 389 (623)
.||-=+..++-.+++.. +.+ |++.+|+|.|.|..|..+|+.|.+. | -+++++|++.
T Consensus 4 aTg~Gv~~~~~~~~~~~~~~~~---l~gk~v~I~G~G~vG~~~A~~L~~~-----G----------~~Vvv~D~~~---- 61 (200)
T cd01075 4 PTAYGVFLGMKAAAEHLLGTDS---LEGKTVAVQGLGKVGYKLAEHLLEE-----G----------AKLIVADINE---- 61 (200)
T ss_pred hhHHHHHHHHHHHHHHhcCCCC---CCCCEEEEECCCHHHHHHHHHHHHC-----C----------CEEEEEcCCH----
Confidence 46666677777888875 777 9999999999999999999988774 7 3577888641
Q ss_pred CCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCC-CCCC
Q 040403 390 DRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSN-PTNN 468 (623)
Q Consensus 390 ~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSN-Pt~~ 468 (623)
+....++. .+. .. ..+..+... .+.|+++=++ .++..|++.++.|+ -++|..-+| |+..
T Consensus 62 ------~~~~~~~~---~~g---~~-~v~~~~l~~-~~~Dv~vp~A-~~~~I~~~~~~~l~-----~~~v~~~AN~~~~~ 121 (200)
T cd01075 62 ------EAVARAAE---LFG---AT-VVAPEEIYS-VDADVFAPCA-LGGVINDDTIPQLK-----AKAIAGAANNQLAD 121 (200)
T ss_pred ------HHHHHHHH---HcC---CE-EEcchhhcc-ccCCEEEecc-cccccCHHHHHHcC-----CCEEEECCcCccCC
Confidence 11122221 100 01 111233333 3799999665 57899999999992 468888888 6632
Q ss_pred CCCCHHHHhc
Q 040403 469 AECTPEEAFS 478 (623)
Q Consensus 469 ~E~tpeda~~ 478 (623)
..+++.++
T Consensus 122 --~~~~~~L~ 129 (200)
T cd01075 122 --PRHGQMLH 129 (200)
T ss_pred --HhHHHHHH
Confidence 33445544
No 41
>PLN00106 malate dehydrogenase
Probab=95.24 E-value=0.056 Score=58.01 Aligned_cols=132 Identities=21% Similarity=0.239 Sum_probs=85.4
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCC-CCCCCh
Q 040403 319 AGLLGAVRAQGRSMIDFPKQKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITED-RENIDP 396 (623)
Q Consensus 319 Agll~A~r~~g~~~~~l~d~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~-r~~l~~ 396 (623)
|.-|.|||..|.. ...||+|+|| |..|.-+|..|... |+ ...+.|+|.+- ... --||.+
T Consensus 4 ~~~~~~~~~~~~~----~~~KV~IiGaaG~VG~~~a~~l~~~-----~~--------~~el~L~Di~~--~~g~a~Dl~~ 64 (323)
T PLN00106 4 ASSLRACRAKGGA----PGFKVAVLGAAGGIGQPLSLLMKMN-----PL--------VSELHLYDIAN--TPGVAADVSH 64 (323)
T ss_pred hhhhhccccccCC----CCCEEEEECCCCHHHHHHHHHHHhC-----CC--------CCEEEEEecCC--CCeeEchhhh
Confidence 4557899999987 4479999999 99999998877652 54 34799999865 111 112322
Q ss_pred hhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCC--------------CCHHHHHHcccCCCCCCEEEec
Q 040403 397 DAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGL--------------FSKEVLEAMRGSTSTRPAIFAM 462 (623)
Q Consensus 397 ~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~--------------Ft~evv~~M~a~~~erPIIFaL 462 (623)
... +. .... -....++.++++ +.|++|=+.+.+.. ..+++++.+ .+++.+.||+.-
T Consensus 65 ~~~-~~----~i~~--~~~~~d~~~~l~--~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i-~~~~p~aivivv 134 (323)
T PLN00106 65 INT-PA----QVRG--FLGDDQLGDALK--GADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAV-AKHCPNALVNII 134 (323)
T ss_pred CCc-Cc----eEEE--EeCCCCHHHHcC--CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHCCCeEEEEe
Confidence 111 11 0000 013456788888 89988866665322 346778888 889999999999
Q ss_pred CCCCC-CCCCCHHHHhcc
Q 040403 463 SNPTN-NAECTPEEAFSI 479 (623)
Q Consensus 463 SNPt~-~~E~tpeda~~w 479 (623)
|||.. ...+....+.++
T Consensus 135 SNPvD~~~~i~t~~~~~~ 152 (323)
T PLN00106 135 SNPVNSTVPIAAEVLKKA 152 (323)
T ss_pred CCCccccHHHHHHHHHHc
Confidence 99992 222444444444
No 42
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=95.11 E-value=0.11 Score=54.48 Aligned_cols=90 Identities=21% Similarity=0.289 Sum_probs=55.3
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhh
Q 040403 319 AGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDA 398 (623)
Q Consensus 319 Agll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~ 398 (623)
.|++.+++..+.. ++.++++|+|||.||..|+..|... |+ ++|+++|+. .. .-
T Consensus 112 ~G~~~~l~~~~~~---~~~k~vlIlGaGGaaraia~aL~~~-----G~---------~~I~I~nR~----~~------ka 164 (284)
T PRK12549 112 SGFAESFRRGLPD---ASLERVVQLGAGGAGAAVAHALLTL-----GV---------ERLTIFDVD----PA------RA 164 (284)
T ss_pred HHHHHHHHhhccC---ccCCEEEEECCcHHHHHHHHHHHHc-----CC---------CEEEEECCC----HH------HH
Confidence 3456677655555 7889999999999999998888764 85 569999984 11 11
Q ss_pred HHhHHHhh-hhcccccCCCCCHHHHHhhcCCcEEEeccCC
Q 040403 399 KPFARKVN-EISRQGLWEGASLVEVVQQVKPDVLLGLSAV 437 (623)
Q Consensus 399 ~~fA~~~~-~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~ 437 (623)
+.+++.-. .+.........++.+.++ ++|++|.++..
T Consensus 165 ~~la~~l~~~~~~~~~~~~~~~~~~~~--~aDiVInaTp~ 202 (284)
T PRK12549 165 AALADELNARFPAARATAGSDLAAALA--AADGLVHATPT 202 (284)
T ss_pred HHHHHHHHhhCCCeEEEeccchHhhhC--CCCEEEECCcC
Confidence 23332110 110000011234555666 79999988743
No 43
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.99 E-value=0.094 Score=55.57 Aligned_cols=129 Identities=15% Similarity=0.265 Sum_probs=89.0
Q ss_pred HHHHHHHHHhC--Cc---eeeecccCCCchHHHHHHHH---hcc--C------CccccCcchhHHHHHHHHHHHHHHhCC
Q 040403 267 DEFMEAIFTRW--PN---VIVQFEDFQSKWAFKLLQRY---RYK--Y------RMFNDDVQGTAGVAVAGLLGAVRAQGR 330 (623)
Q Consensus 267 defv~av~~~~--P~---~lIqfEDf~~~nAf~lL~ry---r~~--~------~~FNDDiQGTaaV~lAgll~A~r~~g~ 330 (623)
+||.+.++++- |+ .++|+==...-+..++++.. +|- + ..|.++ .+-.-+|-+|++.-++-.+.
T Consensus 76 ~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~~-~~~~PcTp~ai~~ll~~~~i 154 (286)
T PRK14175 76 EEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPEKDVDGFHPINIGKLYIDE-QTFVPCTPLGIMEILKHADI 154 (286)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCCccchHhHhcCC-CCCCCCcHHHHHHHHHHcCC
Confidence 56777777764 54 37776422233444444433 220 1 122222 34566788999999999999
Q ss_pred CCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhc
Q 040403 331 SMIDFPKQKIVVAGAGS-AGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEIS 409 (623)
Q Consensus 331 ~~~~l~d~riv~~GAGs-Ag~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~ 409 (623)
+ |++.+++|+|+|. .|..+|.+|... | ..+++++++.
T Consensus 155 ~---l~Gk~vvVIGrs~~VG~pla~lL~~~-----g----------atVtv~~s~t------------------------ 192 (286)
T PRK14175 155 D---LEGKNAVVIGRSHIVGQPVSKLLLQK-----N----------ASVTILHSRS------------------------ 192 (286)
T ss_pred C---CCCCEEEEECCCchhHHHHHHHHHHC-----C----------CeEEEEeCCc------------------------
Confidence 8 9999999999988 999999998753 5 3567777641
Q ss_pred ccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHH
Q 040403 410 RQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLE 447 (623)
Q Consensus 410 ~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 447 (623)
.+|.+.++ ++|++|.+.+.++.|++++++
T Consensus 193 -------~~l~~~~~--~ADIVIsAvg~p~~i~~~~vk 221 (286)
T PRK14175 193 -------KDMASYLK--DADVIVSAVGKPGLVTKDVVK 221 (286)
T ss_pred -------hhHHHHHh--hCCEEEECCCCCcccCHHHcC
Confidence 12666777 899999999999999998653
No 44
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=94.76 E-value=0.19 Score=46.50 Aligned_cols=112 Identities=21% Similarity=0.342 Sum_probs=67.5
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhh
Q 040403 319 AGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDA 398 (623)
Q Consensus 319 Agll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~ 398 (623)
.|+.+|++..+.+ +++.+++|+|+|..|..+++.+... |. .+++++|++ .+..
T Consensus 4 ~g~~~a~~~~~~~---~~~~~i~iiG~G~~g~~~a~~l~~~-----g~---------~~v~v~~r~----------~~~~ 56 (155)
T cd01065 4 LGFVRALEEAGIE---LKGKKVLILGAGGAARAVAYALAEL-----GA---------AKIVIVNRT----------LEKA 56 (155)
T ss_pred HHHHHHHHhhCCC---CCCCEEEEECCcHHHHHHHHHHHHC-----CC---------CEEEEEcCC----------HHHH
Confidence 5889999988887 8899999999998888888777542 41 568888874 1112
Q ss_pred HHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCC-CHHH---HHHcccCCCCCCEEEecC-CCC
Q 040403 399 KPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLF-SKEV---LEAMRGSTSTRPAIFAMS-NPT 466 (623)
Q Consensus 399 ~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~F-t~ev---v~~M~a~~~erPIIFaLS-NPt 466 (623)
+.+++.-... +......++.++++ ++|++|-+.. ++.. .+++ ...+ .+..+|+=+| +|.
T Consensus 57 ~~~~~~~~~~--~~~~~~~~~~~~~~--~~Dvvi~~~~-~~~~~~~~~~~~~~~~----~~~~~v~D~~~~~~ 120 (155)
T cd01065 57 KALAERFGEL--GIAIAYLDLEELLA--EADLIINTTP-VGMKPGDELPLPPSLL----KPGGVVYDVVYNPL 120 (155)
T ss_pred HHHHHHHhhc--ccceeecchhhccc--cCCEEEeCcC-CCCCCCCCCCCCHHHc----CCCCEEEEcCcCCC
Confidence 2333211100 00012345667776 8999997764 3332 1111 1223 4566777774 454
No 45
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=94.70 E-value=0.24 Score=55.08 Aligned_cols=216 Identities=20% Similarity=0.282 Sum_probs=127.3
Q ss_pred chHHHHHHHHhccCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcc
Q 040403 290 KWAFKLLQRYRYKYRMFNDDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNES 369 (623)
Q Consensus 290 ~nAf~lL~ryr~~~~~FNDDiQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~ 369 (623)
..||..=.|+|.+--. -.|--.|.-|++=-|-++.|. |++.+++|+|||..|..+|..|... |+
T Consensus 139 qkAi~~gKrvRseT~I----~~~~VSi~saAv~lA~~~~~~----L~~~~vlvIGAGem~~lva~~L~~~-----g~--- 202 (414)
T COG0373 139 QKAISVGKRVRSETGI----GKGAVSISSAAVELAKRIFGS----LKDKKVLVIGAGEMGELVAKHLAEK-----GV--- 202 (414)
T ss_pred HHHHHHHHHhhcccCC----CCCccchHHHHHHHHHHHhcc----cccCeEEEEcccHHHHHHHHHHHhC-----CC---
Confidence 5788888888875322 013333444455555555543 7899999999999999998888874 85
Q ss_pred hhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccC-CCCCCCHHHHHH
Q 040403 370 AFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSA-VGGLFSKEVLEA 448 (623)
Q Consensus 370 ~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~-~~g~Ft~evv~~ 448 (623)
++|+++.+. .+.-+.+|+.-.- . ......|.+.+. ..||+|-.++ ..-.++.+.++.
T Consensus 203 ------~~i~IaNRT----------~erA~~La~~~~~-~---~~~l~el~~~l~--~~DvVissTsa~~~ii~~~~ve~ 260 (414)
T COG0373 203 ------KKITIANRT----------LERAEELAKKLGA-E---AVALEELLEALA--EADVVISSTSAPHPIITREMVER 260 (414)
T ss_pred ------CEEEEEcCC----------HHHHHHHHHHhCC-e---eecHHHHHHhhh--hCCEEEEecCCCccccCHHHHHH
Confidence 679988873 1223445532110 0 112344666676 7899886554 446788888876
Q ss_pred cccCCCCCCEEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCccccCCCeeccCCCCccccchhHHHHHHHHcCCcc
Q 040403 449 MRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGSPFKDVDLGNGHIGHCNQGNNMYLFPGVGLGTLLSGSRI 528 (623)
Q Consensus 449 M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~Grai~AtGsPF~pv~~~~G~~~~p~Q~NN~yiFPGiglG~~~~~a~~ 528 (623)
- .+...+=+||=|+||-.-. + ..+.-||+++|-==-|-.+.-.-..
T Consensus 261 a-~~~r~~~livDiavPRdie---------~------------------------~v~~l~~v~l~~iDDL~~iv~~n~~ 306 (414)
T COG0373 261 A-LKIRKRLLIVDIAVPRDVE---------P------------------------EVGELPNVFLYTIDDLEEIVEENLE 306 (414)
T ss_pred H-HhcccCeEEEEecCCCCCC---------c------------------------cccCcCCeEEEehhhHHHHHHHhHH
Confidence 5 2333334999999998311 1 1122345555544444444333222
Q ss_pred cCHHHHHHHHHHH-----HcccCcccccCCccccCCCCcccchHHHHHHHHHHHHHc
Q 040403 529 ISDGMLQAAAECL-----AEYMTEEEVVKGKIYPSISSIRNITKEVAAAVVKEALEE 580 (623)
Q Consensus 529 Itd~m~~aAA~aL-----A~~v~~~~l~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~ 580 (623)
-..+... +|++| +++. +.+..-.+-|.+.++|+-+..|...-.+.|.+.
T Consensus 307 ~R~~~~~-~ae~iIeee~~~~~--~~l~~~~~~~~i~~lr~~a~~v~~~ele~a~~~ 360 (414)
T COG0373 307 ARKEEAA-KAEAIIEEELAEFM--EWLKKLEVVPTIRALREQAEDVREEELEKALKK 360 (414)
T ss_pred HHHHHHH-HHHHHHHHHHHHHH--HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222222 22222 2221 134456688999999888888888877777754
No 46
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.60 E-value=0.32 Score=52.97 Aligned_cols=99 Identities=18% Similarity=0.300 Sum_probs=63.5
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLW 414 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~ 414 (623)
+...+++|+|+|.+|.++++.+... |. ++.++|++- .+ +......|.. .+.. ...
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~l-----Ga----------~V~v~d~~~----~~--~~~l~~~~g~---~v~~-~~~ 219 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGL-----GA----------TVTILDINI----DR--LRQLDAEFGG---RIHT-RYS 219 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHC-----CC----------eEEEEECCH----HH--HHHHHHhcCc---eeEe-ccC
Confidence 4668899999999999999888764 72 488888740 00 1111111110 0000 001
Q ss_pred CCCCHHHHHhhcCCcEEEeccCC-----CCCCCHHHHHHcccCCCCCCEEEecCC
Q 040403 415 EGASLVEVVQQVKPDVLLGLSAV-----GGLFSKEVLEAMRGSTSTRPAIFAMSN 464 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLIG~S~~-----~g~Ft~evv~~M~a~~~erPIIFaLSN 464 (623)
....|.++++ +.|++|.+... +.++|++.++.| .++.+|+-+|-
T Consensus 220 ~~~~l~~~l~--~aDvVI~a~~~~g~~~p~lit~~~l~~m----k~g~vIvDva~ 268 (370)
T TIGR00518 220 NAYEIEDAVK--RADLLIGAVLIPGAKAPKLVSNSLVAQM----KPGAVIVDVAI 268 (370)
T ss_pred CHHHHHHHHc--cCCEEEEccccCCCCCCcCcCHHHHhcC----CCCCEEEEEec
Confidence 1234788887 89999987532 556899999999 56688888774
No 47
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.55 E-value=0.35 Score=50.15 Aligned_cols=132 Identities=21% Similarity=0.233 Sum_probs=68.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHH---hHHHhhh---hc--
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKP---FARKVNE---IS-- 409 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~---fA~~~~~---~~-- 409 (623)
++|.|+|+|..|.+||..+... | -+++++|++- +.+...+.. ......+ ..
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-----G----------~~V~~~d~~~------~~~~~~~~~~~~~~~~~~~~g~~~~~ 60 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-----G----------FQTTLVDIKQ------EQLESAQQEIASIFEQGVARGKLTEA 60 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-----C----------CcEEEEeCCH------HHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 4899999999999999998774 7 3578888741 111111110 1000000 00
Q ss_pred ---cc--ccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccCCcE
Q 040403 410 ---RQ--GLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNI 484 (623)
Q Consensus 410 ---~~--~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~Gra 484 (623)
.. ......++.++++ +.|++|=+-...-...+++++.+ .+......|++ ||.++ ..+++..+..+-..
T Consensus 61 ~~~~~~~~i~~~~~~~~~~~--~aD~Vi~avpe~~~~k~~~~~~l-~~~~~~~~il~-~~tSt---~~~~~l~~~~~~~~ 133 (288)
T PRK09260 61 ARQAALARLSYSLDLKAAVA--DADLVIEAVPEKLELKKAVFETA-DAHAPAECYIA-TNTST---MSPTEIASFTKRPE 133 (288)
T ss_pred HHHHHHhCeEEeCcHHHhhc--CCCEEEEeccCCHHHHHHHHHHH-HhhCCCCcEEE-EcCCC---CCHHHHHhhcCCcc
Confidence 00 0112457888888 78999854322111234555555 44444444443 44332 44555555443322
Q ss_pred EEecCCCCCcccc
Q 040403 485 IFASGSPFKDVDL 497 (623)
Q Consensus 485 i~AtGsPF~pv~~ 497 (623)
=+....+|.||..
T Consensus 134 r~~g~h~~~Pv~~ 146 (288)
T PRK09260 134 RVIAMHFFNPVHK 146 (288)
T ss_pred cEEEEecCCCccc
Confidence 2444567777744
No 48
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=94.46 E-value=0.061 Score=46.18 Aligned_cols=94 Identities=20% Similarity=0.254 Sum_probs=62.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEE-ccCCcccCCCCCCChhhHHhHHHhhhhcccccCC-C
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVV-DAKGLITEDRENIDPDAKPFARKVNEISRQGLWE-G 416 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lv-D~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~-~ 416 (623)
||.|+|+|..|..+++.+... |.. ..+|+++ +++ ++....+++ ++. ..- .
T Consensus 1 kI~iIG~G~mg~al~~~l~~~-----g~~-------~~~v~~~~~r~----------~~~~~~~~~---~~~---~~~~~ 52 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS-----GIK-------PHEVIIVSSRS----------PEKAAELAK---EYG---VQATA 52 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT-----TS--------GGEEEEEEESS----------HHHHHHHHH---HCT---TEEES
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CCC-------ceeEEeeccCc----------HHHHHHHHH---hhc---ccccc
Confidence 689999999999999888774 753 3678865 663 222233332 110 111 2
Q ss_pred CCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCC
Q 040403 417 ASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNP 465 (623)
Q Consensus 417 ~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNP 465 (623)
.+..|+++ ++|++| ++- +...-+++++.+ ....+..+|..++||
T Consensus 53 ~~~~~~~~--~advvi-lav-~p~~~~~v~~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 53 DDNEEAAQ--EADVVI-LAV-KPQQLPEVLSEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp EEHHHHHH--HTSEEE-E-S--GGGHHHHHHHH-HHHHTTSEEEEESTT
T ss_pred CChHHhhc--cCCEEE-EEE-CHHHHHHHHHHH-hhccCCCEEEEeCCC
Confidence 36999999 889887 553 344447788887 667888888888876
No 49
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=94.43 E-value=0.071 Score=59.17 Aligned_cols=130 Identities=19% Similarity=0.209 Sum_probs=78.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhc-CCCcchhhhccCeEEEEccCCcccCCCCC-CChhhHHhHHHhhhhcccccCC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARML-GNNESAFDSARSQFWVVDAKGLITEDREN-IDPDAKPFARKVNEISRQGLWE 415 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~-Gls~~~~eeA~~~i~lvD~~GLi~~~r~~-l~~~~~~fA~~~~~~~~~~~~~ 415 (623)
.||+|+||||+ -.-.|+..+.+.. .++. ..|||+|-+ ..|-. +...-+.+++... .+|.-..
T Consensus 1 ~KI~iIGgGS~---~tp~li~~l~~~~~~l~~-------~ei~L~Did----~~Rl~~v~~l~~~~~~~~g--~~~~v~~ 64 (425)
T cd05197 1 VKIAIIGGGSS---FTPELVSGLLKTPEELPI-------SEVTLYDID----EERLDIILTIAKRYVEEVG--ADIKFEK 64 (425)
T ss_pred CEEEEECCchH---hHHHHHHHHHcChhhCCC-------CEEEEEcCC----HHHHHHHHHHHHHHHHhhC--CCeEEEE
Confidence 38999999995 4444444444321 3443 789999974 22211 1111122222110 1122334
Q ss_pred CCCHHHHHhhcCCcEEE---------------------e-----ccCCCCCCC--------HHHHHHcccCCCCCCEEEe
Q 040403 416 GASLVEVVQQVKPDVLL---------------------G-----LSAVGGLFS--------KEVLEAMRGSTSTRPAIFA 461 (623)
Q Consensus 416 ~~~L~e~V~~vkptvLI---------------------G-----~S~~~g~Ft--------~evv~~M~a~~~erPIIFa 461 (623)
..++.+|++ ++|.+| | +-|.||.|. .++++.| .++|+.-+|+-
T Consensus 65 ttD~~~Al~--gADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i-~~~~P~a~lin 141 (425)
T cd05197 65 TMDLEDAII--DADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKX-EKLSPDAWYLN 141 (425)
T ss_pred eCCHHHHhC--CCCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHH-HHhCCCcEEEe
Confidence 678999999 888887 1 123445443 3899999 89999999999
Q ss_pred cCCCCCCCCCCHHHHhcccCCcEEEecC
Q 040403 462 MSNPTNNAECTPEEAFSIVGDNIIFASG 489 (623)
Q Consensus 462 LSNPt~~~E~tpeda~~wT~Grai~AtG 489 (623)
.|||. -+.-+-+++++...-+|.+|
T Consensus 142 ~TNP~---di~t~a~~~~~p~~rviG~c 166 (425)
T cd05197 142 FTNPA---GEVTEAVRRYVPPEKAVGLC 166 (425)
T ss_pred cCChH---HHHHHHHHHhCCCCcEEEEC
Confidence 99998 44445556666444456655
No 50
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.14 E-value=0.57 Score=53.40 Aligned_cols=43 Identities=21% Similarity=0.400 Sum_probs=32.7
Q ss_pred CCcEEEeccCCCC-----CCCHHHHHHcccCCCCCCEEEecCCCC-CCCCCCH
Q 040403 427 KPDVLLGLSAVGG-----LFSKEVLEAMRGSTSTRPAIFAMSNPT-NNAECTP 473 (623)
Q Consensus 427 kptvLIG~S~~~g-----~Ft~evv~~M~a~~~erPIIFaLSNPt-~~~E~tp 473 (623)
+.|++|.+++.+| ++|++.++.| .+.-+|.=++.+. ..+|++.
T Consensus 248 gaDVVIetag~pg~~aP~lit~~~v~~m----kpGgvIVdvg~~~GG~~e~t~ 296 (509)
T PRK09424 248 EVDIIITTALIPGKPAPKLITAEMVASM----KPGSVIVDLAAENGGNCELTV 296 (509)
T ss_pred CCCEEEECCCCCcccCcchHHHHHHHhc----CCCCEEEEEccCCCCCccccc
Confidence 6999999999876 6799999999 5666777777753 3345554
No 51
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.01 E-value=0.62 Score=49.49 Aligned_cols=130 Identities=15% Similarity=0.095 Sum_probs=89.4
Q ss_pred HHHHHHHHHhC--Cc---eeeecccCCCchHHHHHHHHh--ccCCccccCcc--------hhHHHHHHHHHHHHHHhCCC
Q 040403 267 DEFMEAIFTRW--PN---VIVQFEDFQSKWAFKLLQRYR--YKYRMFNDDVQ--------GTAGVAVAGLLGAVRAQGRS 331 (623)
Q Consensus 267 defv~av~~~~--P~---~lIqfEDf~~~nAf~lL~ryr--~~~~~FNDDiQ--------GTaaV~lAgll~A~r~~g~~ 331 (623)
+||.+.++++- |+ .++|+==.+.-|..++++... +.+=.||..-. +-.-+|-.|++.=++-.+.+
T Consensus 75 ~el~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~PcTp~avi~lL~~~~i~ 154 (285)
T PRK14191 75 AELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDPNKDVDGFHPLNIGKLCSQLDGFVPATPMGVMRLLKHYHIE 154 (285)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccChhhHHHHhcCCCCCCCCcHHHHHHHHHHhCCC
Confidence 67888888876 54 377764333334444444332 12323332222 23456778888888989998
Q ss_pred CCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcc
Q 040403 332 MIDFPKQKIVVAGAG-SAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISR 410 (623)
Q Consensus 332 ~~~l~d~riv~~GAG-sAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~ 410 (623)
+++.+++|+|.| ..|.-+|.++... |. .+.+|+++
T Consensus 155 ---l~Gk~vvVvGrs~~VG~Pla~lL~~~-----gA----------tVtv~hs~-------------------------- 190 (285)
T PRK14191 155 ---IKGKDVVIIGASNIVGKPLAMLMLNA-----GA----------SVSVCHIL-------------------------- 190 (285)
T ss_pred ---CCCCEEEEECCCchhHHHHHHHHHHC-----CC----------EEEEEeCC--------------------------
Confidence 999999999999 9999999998753 63 35556542
Q ss_pred cccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHH
Q 040403 411 QGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLE 447 (623)
Q Consensus 411 ~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 447 (623)
..+|.+.++ ++|++|.+.+.++.+++++|+
T Consensus 191 -----t~~l~~~~~--~ADIvV~AvG~p~~i~~~~vk 220 (285)
T PRK14191 191 -----TKDLSFYTQ--NADIVCVGVGKPDLIKASMVK 220 (285)
T ss_pred -----cHHHHHHHH--hCCEEEEecCCCCcCCHHHcC
Confidence 012667777 899999999999999998875
No 52
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=93.53 E-value=0.41 Score=50.10 Aligned_cols=105 Identities=15% Similarity=0.161 Sum_probs=61.9
Q ss_pred CCccccCcchhHHHHHHHHHHHHHHhCC--CCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEE
Q 040403 303 YRMFNDDVQGTAGVAVAGLLGAVRAQGR--SMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWV 380 (623)
Q Consensus 303 ~~~FNDDiQGTaaV~lAgll~A~r~~g~--~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~l 380 (623)
+.=||-|..| ++.+++-.+. + +++.+++|+|||.||-.|+-.|... |. ++|++
T Consensus 100 l~G~NTD~~G--------~~~~l~~~~~~~~---~~~k~vlvlGaGGaarai~~aL~~~-----G~---------~~i~I 154 (282)
T TIGR01809 100 WKGDNTDWDG--------IAGALANIGKFEP---LAGFRGLVIGAGGTSRAAVYALASL-----GV---------TDITV 154 (282)
T ss_pred EEEecCCHHH--------HHHHHHhhCCccc---cCCceEEEEcCcHHHHHHHHHHHHc-----CC---------CeEEE
Confidence 4556777654 5566665553 4 7889999999999998887777653 85 67999
Q ss_pred EccCCcccCCCCCCChhhHHhHHHhhhhcccccCCC---CCHHHHHhhcCCcEEEeccCCCCCCCHHHH
Q 040403 381 VDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEG---ASLVEVVQQVKPDVLLGLSAVGGLFSKEVL 446 (623)
Q Consensus 381 vD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~---~~L~e~V~~vkptvLIG~S~~~g~Ft~evv 446 (623)
+++. . +..+.+|..-... +..... ..+.+++. ++|++|.++..+-.++.+.+
T Consensus 155 ~nRt----~------~ka~~La~~~~~~--~~~~~~~~~~~~~~~~~--~~DiVInaTp~g~~~~~~~l 209 (282)
T TIGR01809 155 INRN----P------DKLSRLVDLGVQV--GVITRLEGDSGGLAIEK--AAEVLVSTVPADVPADYVDL 209 (282)
T ss_pred EeCC----H------HHHHHHHHHhhhc--Ccceeccchhhhhhccc--CCCEEEECCCCCCCCCHHHh
Confidence 9873 1 1123333211110 000011 12334444 78999998876544544433
No 53
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=93.49 E-value=0.38 Score=53.36 Aligned_cols=131 Identities=17% Similarity=0.277 Sum_probs=79.5
Q ss_pred chHHHHHHHHhccCCccccCcchhHHH--HHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCC
Q 040403 290 KWAFKLLQRYRYKYRMFNDDVQGTAGV--AVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNN 367 (623)
Q Consensus 290 ~nAf~lL~ryr~~~~~FNDDiQGTaaV--~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls 367 (623)
..||+.=.|-|.+.-. |.+.| +-+|+=-|.+..+ + +++.+++|+|||.+|-.+|..|... |.
T Consensus 142 ~~A~~~aKrVrteT~I------~~~~vSv~~~Av~la~~~~~-~---l~~kkvlviGaG~~a~~va~~L~~~-----g~- 205 (414)
T PRK13940 142 QKVFATAKRVRSETRI------GHCPVSVAFSAITLAKRQLD-N---ISSKNVLIIGAGQTGELLFRHVTAL-----AP- 205 (414)
T ss_pred HHHHHHHHHHHhccCC------CCCCcCHHHHHHHHHHHHhc-C---ccCCEEEEEcCcHHHHHHHHHHHHc-----CC-
Confidence 4567776777765433 33333 3333333444443 3 7899999999999998888877653 74
Q ss_pred cchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCC-CCCHHHH
Q 040403 368 ESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGG-LFSKEVL 446 (623)
Q Consensus 368 ~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g-~Ft~evv 446 (623)
++|+++++. .+.-+.++..-.. .. .....+|.+++. +.|++|-+++.+. ++|++.+
T Consensus 206 --------~~I~V~nRt----------~~ra~~La~~~~~-~~--~~~~~~l~~~l~--~aDiVI~aT~a~~~vi~~~~~ 262 (414)
T PRK13940 206 --------KQIMLANRT----------IEKAQKITSAFRN-AS--AHYLSELPQLIK--KADIIIAAVNVLEYIVTCKYV 262 (414)
T ss_pred --------CEEEEECCC----------HHHHHHHHHHhcC-Ce--EecHHHHHHHhc--cCCEEEECcCCCCeeECHHHh
Confidence 579998884 1222445432100 00 112245677777 7999999887654 4676543
Q ss_pred HHcccCCCCCCE-EEecCCCC
Q 040403 447 EAMRGSTSTRPA-IFAMSNPT 466 (623)
Q Consensus 447 ~~M~a~~~erPI-IFaLSNPt 466 (623)
..+|+ |+=|++|-
T Consensus 263 -------~~~~~~~iDLavPR 276 (414)
T PRK13940 263 -------GDKPRVFIDISIPQ 276 (414)
T ss_pred -------CCCCeEEEEeCCCC
Confidence 23554 57799997
No 54
>PRK06223 malate dehydrogenase; Reviewed
Probab=93.39 E-value=0.38 Score=50.30 Aligned_cols=128 Identities=17% Similarity=0.178 Sum_probs=76.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhh-cccccCCC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEI-SRQGLWEG 416 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~-~~~~~~~~ 416 (623)
.||.|+|||..|.++|..+... |+ . .++++|.+ .++ +......+.+..... ........
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~-----~~--------~-ev~L~D~~----~~~--~~~~~~dl~~~~~~~~~~~~i~~~ 62 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALK-----EL--------G-DVVLFDIV----EGV--PQGKALDIAEAAPVEGFDTKITGT 62 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC--------e-EEEEEECC----Cch--hHHHHHHHHhhhhhcCCCcEEEeC
Confidence 4899999999999999987653 53 2 69999982 111 111111121110000 00001113
Q ss_pred CCHHHHHhhcCCcEEEeccCCC---C-----------CCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccCC
Q 040403 417 ASLVEVVQQVKPDVLLGLSAVG---G-----------LFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGD 482 (623)
Q Consensus 417 ~~L~e~V~~vkptvLIG~S~~~---g-----------~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~G 482 (623)
.+. ++++ +.|++|=+.+.| | -.-+++++.| .+++...+++-.|||. .....-+++++ |
T Consensus 63 ~d~-~~~~--~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i-~~~~~~~~viv~tNP~---d~~~~~~~~~s-~ 134 (307)
T PRK06223 63 NDY-EDIA--GSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGI-KKYAPDAIVIVVTNPV---DAMTYVALKES-G 134 (307)
T ss_pred CCH-HHHC--CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHH-HHHCCCeEEEEecCcH---HHHHHHHHHHh-C
Confidence 455 4566 889988333222 2 1235677778 7788899888889998 45555566665 4
Q ss_pred ---cEEEecCCCCC
Q 040403 483 ---NIIFASGSPFK 493 (623)
Q Consensus 483 ---rai~AtGsPF~ 493 (623)
+-+|++|.-.+
T Consensus 135 ~~~~~viG~gt~ld 148 (307)
T PRK06223 135 FPKNRVIGMAGVLD 148 (307)
T ss_pred CCcccEEEeCCCcH
Confidence 56888885443
No 55
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.38 E-value=6.5 Score=40.89 Aligned_cols=32 Identities=31% Similarity=0.494 Sum_probs=26.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.+|.|+|+|..|.+||..+... |. +++++|.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-----G~----------~V~l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-----GY----------DVTIVDVS 35 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-----CC----------eEEEEeCC
Confidence 4799999999999999998774 73 58888874
No 56
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.27 E-value=0.6 Score=49.06 Aligned_cols=38 Identities=11% Similarity=-0.217 Sum_probs=29.3
Q ss_pred ccCCCCccccchhHHHHHHHHcCCcccCHHHHHHHHHH
Q 040403 503 GHCNQGNNMYLFPGVGLGTLLSGSRIISDGMLQAAAEC 540 (623)
Q Consensus 503 ~~p~Q~NN~yiFPGiglG~~~~~a~~Itd~m~~aAA~a 540 (623)
..||+..|-+.++++.=++.++..--++.+-+..+...
T Consensus 184 ~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~~ 221 (308)
T PRK06129 184 EIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIRD 221 (308)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 45678888888899888888888777887777766543
No 57
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=93.27 E-value=0.3 Score=47.63 Aligned_cols=54 Identities=26% Similarity=0.327 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 313 TAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 313 TaaV~lAgll~A~r~~g~~~~~l~d~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
|++.+++.+..+++..|.. +++.+++++|+ |..|..++..+... | .++++++++
T Consensus 7 ta~aav~~~~~~l~~~~~~---l~~~~vlVlGgtG~iG~~~a~~l~~~-----g----------~~V~l~~R~ 61 (194)
T cd01078 7 TAAAAVAAAGKALELMGKD---LKGKTAVVLGGTGPVGQRAAVLLARE-----G----------ARVVLVGRD 61 (194)
T ss_pred HHHHHHHHHHHHHHHhCcC---CCCCEEEEECCCCHHHHHHHHHHHHC-----C----------CEEEEEcCC
Confidence 6777778888888877888 99999999997 98888888777652 5 368888764
No 58
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=93.26 E-value=1.3 Score=50.75 Aligned_cols=133 Identities=19% Similarity=0.298 Sum_probs=66.5
Q ss_pred CcchhHHHHHHHHHHHHHHhCC--CCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCc
Q 040403 309 DVQGTAGVAVAGLLGAVRAQGR--SMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGL 386 (623)
Q Consensus 309 DiQGTaaV~lAgll~A~r~~g~--~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GL 386 (623)
-|-|-.+|..|+=.-.-...|. ........|++|+|+|.+|+..+..+... |. +++.+|.+.-
T Consensus 134 ~iAGy~Avi~Aa~~lgr~~~g~~taag~vp~akVlViGaG~iGl~Aa~~ak~l-----GA----------~V~v~d~~~~ 198 (511)
T TIGR00561 134 NIAGYRAIIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAANSL-----GA----------IVRAFDTRPE 198 (511)
T ss_pred HHHHHHHHHHHHHHhhhhcCCceecCCCCCCCEEEEECCCHHHHHHHHHHHHC-----CC----------EEEEEeCCHH
Confidence 4556666665543332222221 00014568999999999999887777663 62 3666676532
Q ss_pred ccCCCCCCCh------------hhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCC-----CCCCHHHHHHc
Q 040403 387 ITEDRENIDP------------DAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVG-----GLFSKEVLEAM 449 (623)
Q Consensus 387 i~~~r~~l~~------------~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~-----g~Ft~evv~~M 449 (623)
...--..+.. ...-||+...+ .+......-+.+.++ +.|++|++.-.+ -+.|+++++.|
T Consensus 199 rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~--~~~~~~~~~~~e~~~--~~DIVI~TalipG~~aP~Lit~emv~~M 274 (511)
T TIGR00561 199 VKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSE--EFIAAEMELFAAQAK--EVDIIITTALIPGKPAPKLITEEMVDSM 274 (511)
T ss_pred HHHHHHHcCCeEEeccccccccccccceeecCH--HHHHHHHHHHHHHhC--CCCEEEECcccCCCCCCeeehHHHHhhC
Confidence 1000000000 00001100000 000000111555566 799999998333 35899999999
Q ss_pred ccCCCCCCEEEecCC
Q 040403 450 RGSTSTRPAIFAMSN 464 (623)
Q Consensus 450 ~a~~~erPIIFaLSN 464 (623)
| +.-+|.=||-
T Consensus 275 K----pGsvIVDlA~ 285 (511)
T TIGR00561 275 K----AGSVIVDLAA 285 (511)
T ss_pred C----CCCEEEEeee
Confidence 3 3344544443
No 59
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=93.22 E-value=0.13 Score=56.93 Aligned_cols=130 Identities=15% Similarity=0.219 Sum_probs=78.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhh-h-cccccCC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNE-I-SRQGLWE 415 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~-~-~~~~~~~ 415 (623)
.||+|+||||+ -.-.++-..+.+...++. +.|||+|.+- ..| |.- -..+++.-.+ . .+|.-..
T Consensus 1 ~KI~iIGaGS~--~tp~li~~l~~~~~~l~~-------~ei~L~Did~---~~r--l~~-v~~~~~~~~~~~~~~~~v~~ 65 (419)
T cd05296 1 MKLTIIGGGSS--YTPELIEGLIRRYEELPV-------TELVLVDIDE---EEK--LEI-VGALAKRMVKKAGLPIKVHL 65 (419)
T ss_pred CEEEEECCchH--hHHHHHHHHHhccccCCC-------CEEEEecCCh---HHH--HHH-HHHHHHHHHHhhCCCeEEEE
Confidence 48999999996 444444443332223432 7899999852 111 111 1122221111 0 1122234
Q ss_pred CCCHHHHHhhcCCcEEEeccCCCCC----------------------------------CCHHHHHHcccCCCCCCEEEe
Q 040403 416 GASLVEVVQQVKPDVLLGLSAVGGL----------------------------------FSKEVLEAMRGSTSTRPAIFA 461 (623)
Q Consensus 416 ~~~L~e~V~~vkptvLIG~S~~~g~----------------------------------Ft~evv~~M~a~~~erPIIFa 461 (623)
..++.+|++ ++|.+|=.-.++|. .=.++++.| .++|+.-+|+=
T Consensus 66 t~d~~~al~--gadfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i-~~~~Pda~lin 142 (419)
T cd05296 66 TTDRREALE--GADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDV-EELAPDAWLIN 142 (419)
T ss_pred eCCHHHHhC--CCCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHH-HHHCCCeEEEE
Confidence 678999999 88888744333331 123788888 89999999999
Q ss_pred cCCCCCCCCCCHHHHhcccCCcEEEecC
Q 040403 462 MSNPTNNAECTPEEAFSIVGDNIIFASG 489 (623)
Q Consensus 462 LSNPt~~~E~tpeda~~wT~Grai~AtG 489 (623)
.|||. -+..+-+++++ ..-+|.+|
T Consensus 143 ~TNP~---~ivt~a~~k~~-~~rviGlc 166 (419)
T cd05296 143 FTNPA---GIVTEAVLRHT-GDRVIGLC 166 (419)
T ss_pred ecCHH---HHHHHHHHHhc-cCCEEeeC
Confidence 99998 36666677777 44466655
No 60
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=93.19 E-value=0.32 Score=49.92 Aligned_cols=128 Identities=17% Similarity=0.203 Sum_probs=79.6
Q ss_pred EEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCC
Q 040403 340 IVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGAS 418 (623)
Q Consensus 340 iv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~ 418 (623)
|.|+|| |..|.++|..++.. |. .....++|+|.+. ++ +......+.+-......+.-....+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~-----~~------~~~~el~L~D~~~----~~--l~~~~~dl~~~~~~~~~~~i~~~~d 63 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG-----SV------LLAIELVLYDIDE----EK--LKGVAMDLQDAVEPLADIKVSITDD 63 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC-----CC------CcceEEEEEeCCc----cc--chHHHHHHHHhhhhccCcEEEECCc
Confidence 579999 99999999888763 51 1136799999854 11 1111111110000000011223567
Q ss_pred HHHHHhhcCCcEEEeccCCCCC--------------CCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhccc--CC
Q 040403 419 LVEVVQQVKPDVLLGLSAVGGL--------------FSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIV--GD 482 (623)
Q Consensus 419 L~e~V~~vkptvLIG~S~~~g~--------------Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT--~G 482 (623)
+.++++ +.|++|=+.+.++. .-+++.+.| .++|+..+++-.|||. .....-+++++ ..
T Consensus 64 ~~~~~~--~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i-~~~~p~a~~i~~tNP~---d~~t~~~~~~sg~~~ 137 (263)
T cd00650 64 PYEAFK--DADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNI-EKYSPDAWIIVVSNPV---DIITYLVWRYSGLPK 137 (263)
T ss_pred hHHHhC--CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHH-HHHCCCeEEEEecCcH---HHHHHHHHHHhCCCc
Confidence 889998 89998855544322 247888899 8899999999999998 66666777773 22
Q ss_pred cEEEecCC
Q 040403 483 NIIFASGS 490 (623)
Q Consensus 483 rai~AtGs 490 (623)
+-+|++|.
T Consensus 138 ~kviG~~~ 145 (263)
T cd00650 138 EKVIGLGT 145 (263)
T ss_pred hhEEEeec
Confidence 34566654
No 61
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=93.17 E-value=0.12 Score=51.70 Aligned_cols=36 Identities=19% Similarity=0.375 Sum_probs=32.8
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
|++.||+|+|+|..|.+||..|+.+ |+ +++.++|.+
T Consensus 19 L~~~~V~IvG~GglGs~ia~~La~~-----Gv---------g~i~lvD~D 54 (200)
T TIGR02354 19 LEQATVAICGLGGLGSNVAINLARA-----GI---------GKLILVDFD 54 (200)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHc-----CC---------CEEEEECCC
Confidence 7889999999999999999999886 85 679999997
No 62
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=93.11 E-value=0.79 Score=49.80 Aligned_cols=124 Identities=19% Similarity=0.156 Sum_probs=74.9
Q ss_pred chHHHHHHHHhccCCccccCcchhHHHHHHHH--HHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCC
Q 040403 290 KWAFKLLQRYRYKYRMFNDDVQGTAGVAVAGL--LGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNN 367 (623)
Q Consensus 290 ~nAf~lL~ryr~~~~~FNDDiQGTaaV~lAgl--l~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls 367 (623)
..||..=.|.|.+.-. |.++|.++.+ ..+ +.. .+ |++.+++|+|||..|--+|+.|.+. |.
T Consensus 136 ~~A~~~aKrVRteT~I------~~~~vSv~s~av~~~-~~~-~~---l~~k~vLvIGaGem~~l~a~~L~~~-----g~- 198 (338)
T PRK00676 136 QKALKEGKVFRSKGGA------PYAEVTIESVVQQEL-RRR-QK---SKKASLLFIGYSEINRKVAYYLQRQ-----GY- 198 (338)
T ss_pred HHHHHHHHHHhhhcCC------CCCCcCHHHHHHHHH-HHh-CC---ccCCEEEEEcccHHHHHHHHHHHHc-----CC-
Confidence 4677777777775433 5555555543 222 333 33 8999999999999987777666653 74
Q ss_pred cchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEecc----CCCCCCCH
Q 040403 368 ESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLS----AVGGLFSK 443 (623)
Q Consensus 368 ~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S----~~~g~Ft~ 443 (623)
++|+++.+.-- ..+|... .+ . ..+.. .+.||+|-+| +..-..|.
T Consensus 199 --------~~i~v~nRt~~-----------~~~~~~~--~~------~---~~~~~--~~~DvVIs~t~~Tas~~p~i~~ 246 (338)
T PRK00676 199 --------SRITFCSRQQL-----------TLPYRTV--VR------E---ELSFQ--DPYDVIFFGSSESAYAFPHLSW 246 (338)
T ss_pred --------CEEEEEcCCcc-----------ccchhhh--hh------h---hhhcc--cCCCEEEEcCCcCCCCCceeeH
Confidence 67999998641 1233210 00 0 00111 2789999653 23345667
Q ss_pred HHHHHcccCCCCCCEEEecCCCCC
Q 040403 444 EVLEAMRGSTSTRPAIFAMSNPTN 467 (623)
Q Consensus 444 evv~~M~a~~~erPIIFaLSNPt~ 467 (623)
+.++.. .+| ++|=||+|-.
T Consensus 247 ~~~~~~----~~r-~~iDLAvPRd 265 (338)
T PRK00676 247 ESLADI----PDR-IVFDFNVPRT 265 (338)
T ss_pred HHHhhc----cCc-EEEEecCCCC
Confidence 665544 224 9999999984
No 63
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=92.95 E-value=2.4 Score=43.24 Aligned_cols=120 Identities=16% Similarity=0.206 Sum_probs=70.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGA 417 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~ 417 (623)
.+|.|+|+|..|..+|..+... |... .+++++|++ .+..+.++... . .....
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-----g~~~-------~~v~v~~r~----------~~~~~~~~~~~-g-----~~~~~ 54 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLAS-----GVPA-------KDIIVSDPS----------PEKRAALAEEY-G-----VRAAT 54 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhC-----CCCc-------ceEEEEcCC----------HHHHHHHHHhc-C-----CeecC
Confidence 4799999999999999888764 6422 568888863 11112222110 1 11234
Q ss_pred CHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccC-CcEEEecCCCCCccc
Q 040403 418 SLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVG-DNIIFASGSPFKDVD 496 (623)
Q Consensus 418 ~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~-Grai~AtGsPF~pv~ 496 (623)
+..++++ ++|++| ++. +....+++++.+ ..+. ..+|..++|-++ .++.-+|.. |.. +...-|..|..
T Consensus 55 ~~~~~~~--~advVi-l~v-~~~~~~~v~~~l-~~~~-~~~vvs~~~gi~-----~~~l~~~~~~~~~-iv~~~P~~p~~ 122 (267)
T PRK11880 55 DNQEAAQ--EADVVV-LAV-KPQVMEEVLSEL-KGQL-DKLVVSIAAGVT-----LARLERLLGADLP-VVRAMPNTPAL 122 (267)
T ss_pred ChHHHHh--cCCEEE-EEc-CHHHHHHHHHHH-Hhhc-CCEEEEecCCCC-----HHHHHHhcCCCCc-EEEecCCchHH
Confidence 6777776 677776 442 334568888888 4433 358999999774 344445543 222 22345655554
Q ss_pred c
Q 040403 497 L 497 (623)
Q Consensus 497 ~ 497 (623)
+
T Consensus 123 ~ 123 (267)
T PRK11880 123 V 123 (267)
T ss_pred H
Confidence 4
No 64
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=92.87 E-value=2.8 Score=47.38 Aligned_cols=129 Identities=22% Similarity=0.229 Sum_probs=68.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHh--HHHh-hhh-----c
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPF--ARKV-NEI-----S 409 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~f--A~~~-~~~-----~ 409 (623)
.||.|+|+|..|.+||..++.+ |. +++++|..- + .+...+... ++.. ..+ .
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~-----G~----------~V~v~D~~~----~--~~~~~~~~~~~~~~~~~~l~~~~~~ 63 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLA-----GI----------DVAVFDPHP----E--AERIIGEVLANAERAYAMLTDAPLP 63 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC----------eEEEEeCCH----H--HHHHHHHHHHHHHHHHhhhccchhh
Confidence 4899999999999999999875 74 577788731 0 011110000 0000 000 0
Q ss_pred ccc-cCCCCCHHHHHhhcCCcEEEeccCCCCC-CCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhccc--CCcEE
Q 040403 410 RQG-LWEGASLVEVVQQVKPDVLLGLSAVGGL-FSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIV--GDNII 485 (623)
Q Consensus 410 ~~~-~~~~~~L~e~V~~vkptvLIG~S~~~g~-Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT--~Grai 485 (623)
... .....++.|+++ +.|++| .+..... +.+++.+.+ .+..+.-.|+..|--. .. +.+..+.. .|+++
T Consensus 64 ~~g~i~~~~~~~ea~~--~aD~Vi-eavpe~~~vk~~l~~~l-~~~~~~~~iI~SsTsg--i~--~s~l~~~~~~~~r~~ 135 (495)
T PRK07531 64 PEGRLTFCASLAEAVA--GADWIQ-ESVPERLDLKRRVLAEI-DAAARPDALIGSSTSG--FL--PSDLQEGMTHPERLF 135 (495)
T ss_pred hhhceEeeCCHHHHhc--CCCEEE-EcCcCCHHHHHHHHHHH-HhhCCCCcEEEEcCCC--CC--HHHHHhhcCCcceEE
Confidence 000 123467889998 788888 4433332 355565555 4444444565444322 22 33332322 45666
Q ss_pred EecCCCCCcccc
Q 040403 486 FASGSPFKDVDL 497 (623)
Q Consensus 486 ~AtGsPF~pv~~ 497 (623)
++ -||.|+.+
T Consensus 136 ~~--hP~nP~~~ 145 (495)
T PRK07531 136 VA--HPYNPVYL 145 (495)
T ss_pred EE--ecCCCccc
Confidence 55 49888865
No 65
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=92.75 E-value=0.92 Score=43.29 Aligned_cols=83 Identities=18% Similarity=0.205 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCC
Q 040403 315 GVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGS-AGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDREN 393 (623)
Q Consensus 315 aV~lAgll~A~r~~g~~~~~l~d~riv~~GAGs-Ag~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~ 393 (623)
-++..|++.-++..|.+ ++.++|+++|.+. .|.-+|.+| .++ |. .+..+|++
T Consensus 9 p~t~~a~~~ll~~~~~~---~~gk~v~VvGrs~~vG~pla~lL----~~~-ga----------tV~~~~~~--------- 61 (140)
T cd05212 9 SPVAKAVKELLNKEGVR---LDGKKVLVVGRSGIVGAPLQCLL----QRD-GA----------TVYSCDWK--------- 61 (140)
T ss_pred ccHHHHHHHHHHHcCCC---CCCCEEEEECCCchHHHHHHHHH----HHC-CC----------EEEEeCCC---------
Confidence 35778888889999999 9999999999864 344444444 344 63 46666663
Q ss_pred CChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHH
Q 040403 394 IDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEA 448 (623)
Q Consensus 394 l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 448 (623)
..+|.+.++ ++|++|-+.+.++.|+.++|+.
T Consensus 62 ----------------------t~~l~~~v~--~ADIVvsAtg~~~~i~~~~ikp 92 (140)
T cd05212 62 ----------------------TIQLQSKVH--DADVVVVGSPKPEKVPTEWIKP 92 (140)
T ss_pred ----------------------CcCHHHHHh--hCCEEEEecCCCCccCHHHcCC
Confidence 124777888 8999999999999999999874
No 66
>PTZ00117 malate dehydrogenase; Provisional
Probab=92.68 E-value=0.3 Score=52.06 Aligned_cols=128 Identities=16% Similarity=0.199 Sum_probs=78.2
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCC-CCCChhhHHhHHHhhhhcccccC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDR-ENIDPDAKPFARKVNEISRQGLW 414 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r-~~l~~~~~~fA~~~~~~~~~~~~ 414 (623)
+..||.|+|||+.|.++|.++... |+ ..+.|+|.+-=..... -|+.+. ..+. . ..+...
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~-----~~---------~~l~L~Di~~~~~~g~~lDl~~~-~~~~----~-~~~~i~ 63 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQK-----NL---------GDVVLYDVIKGVPQGKALDLKHF-STLV----G-SNINIL 63 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHC-----CC---------CeEEEEECCCccchhHHHHHhhh-cccc----C-CCeEEE
Confidence 456999999999999999887763 65 2499999742111110 011111 0110 0 000011
Q ss_pred CCCCHHHHHhhcCCcEEEeccCCCCC--------------CCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhccc
Q 040403 415 EGASLVEVVQQVKPDVLLGLSAVGGL--------------FSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIV 480 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLIG~S~~~g~--------------Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT 480 (623)
...+++ +++ +.|++|=+.+.+.. +-+++.+.| .++++.-+++=.|||. ......+.+++
T Consensus 64 ~~~d~~-~l~--~ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i-~~~~p~a~vivvsNP~---di~t~~~~~~s 136 (319)
T PTZ00117 64 GTNNYE-DIK--DSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESV-KKYCPNAFVICVTNPL---DCMVKVFQEKS 136 (319)
T ss_pred eCCCHH-HhC--CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHCCCeEEEEecChH---HHHHHHHHHhh
Confidence 234566 666 88998866554332 235889999 8899999888889998 45566666665
Q ss_pred C--CcEEEecCC
Q 040403 481 G--DNIIFASGS 490 (623)
Q Consensus 481 ~--Grai~AtGs 490 (623)
+ =.-+|++|+
T Consensus 137 ~~p~~rviG~gt 148 (319)
T PTZ00117 137 GIPSNKICGMAG 148 (319)
T ss_pred CCCcccEEEecc
Confidence 2 144777774
No 67
>PRK08328 hypothetical protein; Provisional
Probab=92.56 E-value=0.085 Score=53.68 Aligned_cols=122 Identities=18% Similarity=0.243 Sum_probs=71.6
Q ss_pred HHHHhccCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhcc
Q 040403 296 LQRYRYKYRMFNDDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSAR 375 (623)
Q Consensus 296 L~ryr~~~~~FNDDiQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~ 375 (623)
++||..++..|..+.| .+ |++.+|+|+|+|..|.-||..|+.+ |+
T Consensus 7 ~~ry~Rq~~~~g~~~q------------------~~---L~~~~VlIiG~GGlGs~ia~~La~~-----Gv--------- 51 (231)
T PRK08328 7 LERYDRQIMIFGVEGQ------------------EK---LKKAKVAVVGVGGLGSPVAYYLAAA-----GV--------- 51 (231)
T ss_pred HHHHhhHHHhcCHHHH------------------HH---HhCCcEEEECCCHHHHHHHHHHHHc-----CC---------
Confidence 5788877766655322 33 7788999999999999999999886 95
Q ss_pred CeEEEEccCCcccCCCCCCChhhHHhHHHhhhhccccc-CCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCC
Q 040403 376 SQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGL-WEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTS 454 (623)
Q Consensus 376 ~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~-~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~ 454 (623)
++|.++|.+= + +..+|+. | .+... .+.. . .......+.++...|++.|=.. .+.++++-+... - .
T Consensus 52 g~i~lvD~D~-v--e~sNL~R-q-~l~~~-~dvG---~~~k~~~a~~~l~~~np~v~v~~~--~~~~~~~~~~~~-l--~ 117 (231)
T PRK08328 52 GRILLIDEQT-P--ELSNLNR-Q-ILHWE-EDLG---KNPKPLSAKWKLERFNSDIKIETF--VGRLSEENIDEV-L--K 117 (231)
T ss_pred CEEEEEcCCc-c--Chhhhcc-c-cccCh-hhcC---chHHHHHHHHHHHHhCCCCEEEEE--eccCCHHHHHHH-H--h
Confidence 7799999861 1 1222322 1 11100 1100 0 0011234456777888877653 344666555443 1 3
Q ss_pred CCCEEE-ecCCCC
Q 040403 455 TRPAIF-AMSNPT 466 (623)
Q Consensus 455 erPIIF-aLSNPt 466 (623)
+.-+|| +.-|+.
T Consensus 118 ~~D~Vid~~d~~~ 130 (231)
T PRK08328 118 GVDVIVDCLDNFE 130 (231)
T ss_pred cCCEEEECCCCHH
Confidence 445666 455665
No 68
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.45 E-value=2.3 Score=45.75 Aligned_cols=196 Identities=17% Similarity=0.136 Sum_probs=95.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC-cccCCCCCCChhhHHhHHHh---hhhccccc
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG-LITEDRENIDPDAKPFARKV---NEISRQGL 413 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G-Li~~~r~~l~~~~~~fA~~~---~~~~~~~~ 413 (623)
.+|.|+|+|..|.|||..++.+ |. ++.++|..- .+...+..+......+.+.. ..... ..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a-----G~----------~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~i 71 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH-----GL----------DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPA-RL 71 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC----------eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHh-hc
Confidence 5899999999999999999875 84 567788631 00000000110001111000 00000 01
Q ss_pred CCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccC--CcEEEecCCC
Q 040403 414 WEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVG--DNIIFASGSP 491 (623)
Q Consensus 414 ~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~--Grai~AtGsP 491 (623)
....+|.++++ ..|.+|=+-.-.=.+.+++.+.. .++++.=.|++-|--+ ..+.+..+.++ .|+|.+ -|
T Consensus 72 ~~~~~l~~av~--~aDlViEavpE~l~vK~~lf~~l-~~~~~~~aIlaSnTS~----l~~s~la~~~~~p~R~~g~--Hf 142 (321)
T PRK07066 72 RFVATIEACVA--DADFIQESAPEREALKLELHERI-SRAAKPDAIIASSTSG----LLPTDFYARATHPERCVVG--HP 142 (321)
T ss_pred eecCCHHHHhc--CCCEEEECCcCCHHHHHHHHHHH-HHhCCCCeEEEECCCc----cCHHHHHHhcCCcccEEEE--ec
Confidence 23457888887 77877754221122445555555 4555444566543322 23333332222 455543 68
Q ss_pred CCccccCCCeeccCCCCccccchhHHHHHHHHcCCcccCHHHHHHHHHHHHcccCcccccCCccccCCCCcccchHHHHH
Q 040403 492 FKDVDLGNGHIGHCNQGNNMYLFPGVGLGTLLSGSRIISDGMLQAAAECLAEYMTEEEVVKGKIYPSISSIRNITKEVAA 571 (623)
Q Consensus 492 F~pv~~~~G~~~~p~Q~NN~yiFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v~~~~l~~g~l~P~~~~ir~vs~~VA~ 571 (623)
|.|+.+-.--. |-| .. -|+.=.++++.++...+-.. .|.=.-+..--|.-++-.
T Consensus 143 fnP~~~~pLVE----------Vv~----------g~-~T~~e~~~~~~~f~~~lGk~-----pV~v~kd~pGFi~NRl~~ 196 (321)
T PRK07066 143 FNPVYLLPLVE----------VLG----------GE-RTAPEAVDAAMGIYRALGMR-----PLHVRKEVPGFIADRLLE 196 (321)
T ss_pred CCccccCceEE----------EeC----------CC-CCCHHHHHHHHHHHHHcCCE-----eEecCCCCccHHHHHHHH
Confidence 88876511111 111 12 24444555566666554321 111000112346667777
Q ss_pred HHHHHH---HHcCccc
Q 040403 572 AVVKEA---LEEDLAE 584 (623)
Q Consensus 572 aVa~~A---~~~GlA~ 584 (623)
++...| +++|+++
T Consensus 197 a~~~EA~~lv~eGvas 212 (321)
T PRK07066 197 ALWREALHLVNEGVAT 212 (321)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 777666 5789887
No 69
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.36 E-value=5.5 Score=41.62 Aligned_cols=130 Identities=18% Similarity=0.264 Sum_probs=66.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhccc------
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQ------ 411 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~------ 411 (623)
++|.|+|+|..|.+||..+... |. +++++|.+- +.+...+....+....+..+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~-----g~----------~V~~~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK-----GL----------QVVLIDVME------GALERARGVIERALGVYAPLGIASAG 63 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC-----CC----------eEEEEECCH------HHHHHHHHHHHHHHHHhhhcccHHHH
Confidence 5899999999999999998764 63 588888631 11111111111000000000
Q ss_pred --ccCCCCCHHHHHhhcCCcEEEeccCCCCC-CCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccCCcEEEec
Q 040403 412 --GLWEGASLVEVVQQVKPDVLLGLSAVGGL-FSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFAS 488 (623)
Q Consensus 412 --~~~~~~~L~e~V~~vkptvLIG~S~~~g~-Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~Grai~At 488 (623)
......++.++++ +.|++| .+..+.. ..+++++.. ......-.|+. ||..+. +.++..++...+.-|..
T Consensus 64 ~~~i~~~~~~~~~~~--~aDlVi-~av~~~~~~~~~v~~~l-~~~~~~~~ii~-s~tsg~---~~~~l~~~~~~~~~~ig 135 (311)
T PRK06130 64 MGRIRMEAGLAAAVS--GADLVI-EAVPEKLELKRDVFARL-DGLCDPDTIFA-TNTSGL---PITAIAQAVTRPERFVG 135 (311)
T ss_pred hhceEEeCCHHHHhc--cCCEEE-EeccCcHHHHHHHHHHH-HHhCCCCcEEE-ECCCCC---CHHHHHhhcCCcccEEE
Confidence 0012346777887 678777 4422222 356677766 44444444443 444332 24455455433233444
Q ss_pred CCCCCccc
Q 040403 489 GSPFKDVD 496 (623)
Q Consensus 489 GsPF~pv~ 496 (623)
+-||.|..
T Consensus 136 ~h~~~p~~ 143 (311)
T PRK06130 136 THFFTPAD 143 (311)
T ss_pred EccCCCCc
Confidence 45666653
No 70
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=92.24 E-value=1.5 Score=48.29 Aligned_cols=106 Identities=18% Similarity=0.223 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCC
Q 040403 313 TAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRE 392 (623)
Q Consensus 313 TaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~ 392 (623)
.|=-+++.+|+..|..|.. |.+.+|.|+|.|..|..+|+.+... |+ +++.+|... .
T Consensus 95 VAE~v~~~lL~l~r~~g~~---l~gktvGIIG~G~IG~~va~~l~a~-----G~----------~V~~~Dp~~------~ 150 (381)
T PRK00257 95 VVDYVLGSLLTLAEREGVD---LAERTYGVVGAGHVGGRLVRVLRGL-----GW----------KVLVCDPPR------Q 150 (381)
T ss_pred HHHHHHHHHHHHhcccCCC---cCcCEEEEECCCHHHHHHHHHHHHC-----CC----------EEEEECCcc------c
Confidence 3445799999999988888 9999999999999999999998764 85 477788631 0
Q ss_pred CCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEe-cc-------CCCCCCCHHHHHHcccCCCCCCEEEecCC
Q 040403 393 NIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLG-LS-------AVGGLFSKEVLEAMRGSTSTRPAIFAMSN 464 (623)
Q Consensus 393 ~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG-~S-------~~~g~Ft~evv~~M~a~~~erPIIFaLSN 464 (623)
.. .. .....+|.|+++ +.|+++= +. ..-+.|+++.+..| .+..++.=.|.
T Consensus 151 ~~-----------~~-----~~~~~~l~ell~--~aDiV~lh~Plt~~g~~~T~~li~~~~l~~m----k~gailIN~aR 208 (381)
T PRK00257 151 EA-----------EG-----DGDFVSLERILE--ECDVISLHTPLTKEGEHPTRHLLDEAFLASL----RPGAWLINASR 208 (381)
T ss_pred cc-----------cc-----CccccCHHHHHh--hCCEEEEeCcCCCCccccccccCCHHHHhcC----CCCeEEEECCC
Confidence 00 00 112346899988 7887762 11 13489999999999 67778887666
No 71
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=92.19 E-value=0.32 Score=52.02 Aligned_cols=129 Identities=15% Similarity=0.162 Sum_probs=77.1
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCC-CCCChhhHHhHHHhhhhccccc
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDR-ENIDPDAKPFARKVNEISRQGL 413 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r-~~l~~~~~~fA~~~~~~~~~~~ 413 (623)
++-.||.|+|||..|.++|.++... |+. .++|+|.+-=..... -++.+. ..+.. .. ...
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~-----gl~---------~i~LvDi~~~~~~~~~ld~~~~-~~~~~--~~---~~I 63 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLK-----NLG---------DVVLFDIVKNIPQGKALDISHS-NVIAG--SN---SKV 63 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhC-----CCC---------eEEEEeCCCchhhHHHHHHHhh-hhccC--CC---eEE
Confidence 4456999999999999999887653 752 399999842211110 011110 01100 00 001
Q ss_pred CCCCCHHHHHhhcCCcEEEeccCCCCCC-------------------CHHHHHHcccCCCCCCEEEecCCCCCCCCCCHH
Q 040403 414 WEGASLVEVVQQVKPDVLLGLSAVGGLF-------------------SKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPE 474 (623)
Q Consensus 414 ~~~~~L~e~V~~vkptvLIG~S~~~g~F-------------------t~evv~~M~a~~~erPIIFaLSNPt~~~E~tpe 474 (623)
...+++ ++++ +.|++|=+.+.++.- -+++++.| .++++.-+++--|||. .....
T Consensus 64 ~~~~d~-~~l~--~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i-~~~~p~a~~iv~sNP~---di~t~ 136 (321)
T PTZ00082 64 IGTNNY-EDIA--GSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGI-KKYCPNAFVIVITNPL---DVMVK 136 (321)
T ss_pred EECCCH-HHhC--CCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHH-HHHCCCeEEEEecCcH---HHHHH
Confidence 123556 5666 899999655544321 25778888 8888877999999998 44455
Q ss_pred HHhcccC--CcEEEecCC
Q 040403 475 EAFSIVG--DNIIFASGS 490 (623)
Q Consensus 475 da~~wT~--Grai~AtGs 490 (623)
.+++.+. -+-+|++|.
T Consensus 137 ~~~~~sg~p~~rviGlgt 154 (321)
T PTZ00082 137 LLQEHSGLPKNKVCGMAG 154 (321)
T ss_pred HHHHhcCCChhhEEEecC
Confidence 5666652 145777773
No 72
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.17 E-value=0.54 Score=49.96 Aligned_cols=84 Identities=18% Similarity=0.160 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCC
Q 040403 313 TAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGS-AGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDR 391 (623)
Q Consensus 313 TaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGs-Ag~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r 391 (623)
-.-+|-+|++..++-.+.+ |++.+++|+|-|. .|.-+|.+|... | ..+.+|+++
T Consensus 138 ~~PcTp~av~~ll~~~~i~---l~Gk~vvViGrs~iVG~Pla~lL~~~-----~----------atVtv~hs~------- 192 (285)
T PRK10792 138 LRPCTPRGIMTLLERYGID---TYGLNAVVVGASNIVGRPMSLELLLA-----G----------CTVTVCHRF------- 192 (285)
T ss_pred CCCCCHHHHHHHHHHcCCC---CCCCEEEEECCCcccHHHHHHHHHHC-----C----------CeEEEEECC-------
Confidence 3466888999999999999 9999999999998 999999988752 5 346777764
Q ss_pred CCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHH
Q 040403 392 ENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLE 447 (623)
Q Consensus 392 ~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 447 (623)
..+|.+.++ ++|++|-+.|.++.|+.++|+
T Consensus 193 ------------------------T~~l~~~~~--~ADIvi~avG~p~~v~~~~vk 222 (285)
T PRK10792 193 ------------------------TKNLRHHVR--NADLLVVAVGKPGFIPGEWIK 222 (285)
T ss_pred ------------------------CCCHHHHHh--hCCEEEEcCCCcccccHHHcC
Confidence 113777778 899999999999999997775
No 73
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.17 E-value=0.6 Score=49.66 Aligned_cols=130 Identities=14% Similarity=0.161 Sum_probs=87.1
Q ss_pred HHHHHHHHHhC--Cc---eeeecccCCCchHHHHHHHHh--ccCCccccCc--------chhHHHHHHHHHHHHHHhCCC
Q 040403 267 DEFMEAIFTRW--PN---VIVQFEDFQSKWAFKLLQRYR--YKYRMFNDDV--------QGTAGVAVAGLLGAVRAQGRS 331 (623)
Q Consensus 267 defv~av~~~~--P~---~lIqfEDf~~~nAf~lL~ryr--~~~~~FNDDi--------QGTaaV~lAgll~A~r~~g~~ 331 (623)
+||.+.++++- |+ .++|+==...-+..++++... +.+=+||..- .+-.-+|-.|++..++-.+.+
T Consensus 82 ~el~~~I~~LN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~g~~~~~PcTp~av~~ll~~~~i~ 161 (287)
T PRK14176 82 EELLELIDSLNKRKDVHGILLQLPLPKHLDPQEAMEAIDPAKDADGFHPYNMGKLMIGDEGLVPCTPHGVIRALEEYGVD 161 (287)
T ss_pred HHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCccccccccChhhhhhHhcCCCCCCCCcHHHHHHHHHHcCCC
Confidence 56777777764 54 366653222223333333322 1122222221 234567888999999999999
Q ss_pred CCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcc
Q 040403 332 MIDFPKQKIVVAGAGS-AGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISR 410 (623)
Q Consensus 332 ~~~l~d~riv~~GAGs-Ag~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~ 410 (623)
|++.+++|+|.|. -|..+|.+|... |. .+.+|+++
T Consensus 162 ---l~Gk~vvViGrs~iVGkPla~lL~~~-----~a----------tVtv~hs~-------------------------- 197 (287)
T PRK14176 162 ---IEGKNAVIVGHSNVVGKPMAAMLLNR-----NA----------TVSVCHVF-------------------------- 197 (287)
T ss_pred ---CCCCEEEEECCCcccHHHHHHHHHHC-----CC----------EEEEEecc--------------------------
Confidence 9999999999998 999999988753 53 46667652
Q ss_pred cccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHH
Q 040403 411 QGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLE 447 (623)
Q Consensus 411 ~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 447 (623)
..+|.+.++ ++|++|-+.|.|+.++.++|+
T Consensus 198 -----T~~l~~~~~--~ADIvv~AvG~p~~i~~~~vk 227 (287)
T PRK14176 198 -----TDDLKKYTL--DADILVVATGVKHLIKADMVK 227 (287)
T ss_pred -----CCCHHHHHh--hCCEEEEccCCccccCHHHcC
Confidence 123667777 899999999999999998665
No 74
>PTZ00325 malate dehydrogenase; Provisional
Probab=92.04 E-value=0.43 Score=51.30 Aligned_cols=108 Identities=18% Similarity=0.242 Sum_probs=69.2
Q ss_pred CCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhccccc
Q 040403 335 FPKQKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGL 413 (623)
Q Consensus 335 l~d~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~ 413 (623)
++-.||+|.|| |.-|..+|..|... |+ ...+.|+|.+ .....--||.+... .. .... .
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~-----~~--------~~elvL~Di~-~~~g~a~Dl~~~~~-~~----~v~~--~ 64 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQN-----PH--------VSELSLYDIV-GAPGVAADLSHIDT-PA----KVTG--Y 64 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcC-----CC--------CCEEEEEecC-CCcccccchhhcCc-Cc----eEEE--e
Confidence 56679999999 99999998876531 43 3579999992 21111112322111 00 0000 0
Q ss_pred CCCCCHHHHHhhcCCcEEEeccCC---CCC-----------CCHHHHHHcccCCCCCCEEEecCCCC
Q 040403 414 WEGASLVEVVQQVKPDVLLGLSAV---GGL-----------FSKEVLEAMRGSTSTRPAIFAMSNPT 466 (623)
Q Consensus 414 ~~~~~L~e~V~~vkptvLIG~S~~---~g~-----------Ft~evv~~M~a~~~erPIIFaLSNPt 466 (623)
....+..++++ +.|++|=+.|. +|. ..++++++| .+++.+.||+.-|||.
T Consensus 65 td~~~~~~~l~--gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i-~~~~~~~iviv~SNPv 128 (321)
T PTZ00325 65 ADGELWEKALR--GADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAV-ASSAPKAIVGIVSNPV 128 (321)
T ss_pred cCCCchHHHhC--CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHCCCeEEEEecCcH
Confidence 11133478888 89988855554 331 456889999 8889999999999999
No 75
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=91.78 E-value=0.38 Score=50.75 Aligned_cols=49 Identities=18% Similarity=0.340 Sum_probs=38.0
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 319 AGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 319 Agll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.|++.+++-.+.. +++.+++++|||-|+.+|+-.+... |. ++|+++++.
T Consensus 109 ~Gf~~~l~~~~~~---~~~k~vlvlGaGGaarAi~~~l~~~-----g~---------~~i~i~nRt 157 (288)
T PRK12749 109 TGHIRAIKESGFD---IKGKTMVLLGAGGASTAIGAQGAIE-----GL---------KEIKLFNRR 157 (288)
T ss_pred HHHHHHHHhcCCC---cCCCEEEEECCcHHHHHHHHHHHHC-----CC---------CEEEEEeCC
Confidence 3456777777777 8889999999999988876666542 75 679999984
No 76
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=91.61 E-value=0.48 Score=49.73 Aligned_cols=58 Identities=22% Similarity=0.304 Sum_probs=41.4
Q ss_pred cCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEE
Q 040403 302 KYRMFNDDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVV 381 (623)
Q Consensus 302 ~~~~FNDDiQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lv 381 (623)
++.-||-| ..|++.+++..+.. +++++++|+|||.+|.+||..+.. + |. ++|+++
T Consensus 102 ~l~G~NTD--------~~G~~~~l~~~~~~---~~~k~vlI~GAGGagrAia~~La~----~-G~---------~~V~I~ 156 (289)
T PRK12548 102 KLTGHITD--------GLGFVRNLREHGVD---VKGKKLTVIGAGGAATAIQVQCAL----D-GA---------KEITIF 156 (289)
T ss_pred EEEEEecC--------HHHHHHHHHhcCCC---cCCCEEEEECCcHHHHHHHHHHHH----C-CC---------CEEEEE
Confidence 35566777 34566777766666 788999999998777766655554 3 74 569999
Q ss_pred ccC
Q 040403 382 DAK 384 (623)
Q Consensus 382 D~~ 384 (623)
++.
T Consensus 157 ~R~ 159 (289)
T PRK12548 157 NIK 159 (289)
T ss_pred eCC
Confidence 874
No 77
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=91.60 E-value=0.72 Score=49.19 Aligned_cols=127 Identities=14% Similarity=0.255 Sum_probs=78.5
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCC-CCCChhhHHhHHHhhhhcccccCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDR-ENIDPDAKPFARKVNEISRQGLWE 415 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r-~~l~~~~~~fA~~~~~~~~~~~~~ 415 (623)
..||.|+|||..|..+|-+|... |+ ...|.|+|.+-=..++. -||.+.. +|-.+ .. . .
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~-----~~--------~~el~L~D~~~~~~~g~~~Dl~~~~-~~~~~-~~-----i-~ 64 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQ-----GI--------ADELVIIDINKEKAEGDAMDLSHAV-PFTSP-TK-----I-Y 64 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc-----CC--------CCEEEEEeCCCchhHHHHHHHHhhc-cccCC-eE-----E-E
Confidence 46999999999999999987753 66 35699999831111100 1122111 11100 00 0 1
Q ss_pred CCCHHHHHhhcCCcEEEeccCCCCC--CC------------HHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhccc-
Q 040403 416 GASLVEVVQQVKPDVLLGLSAVGGL--FS------------KEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIV- 480 (623)
Q Consensus 416 ~~~L~e~V~~vkptvLIG~S~~~g~--Ft------------~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT- 480 (623)
.++. +.++ +.|++|=+.+.+.. -| +++++.| .+++...+|+-.|||. ++...-+++++
T Consensus 65 ~~~~-~~~~--~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i-~~~~~~~~vivvsNP~---d~~~~~~~k~sg 137 (315)
T PRK00066 65 AGDY-SDCK--DADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEV-MASGFDGIFLVASNPV---DILTYATWKLSG 137 (315)
T ss_pred eCCH-HHhC--CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHhCCCeEEEEccCcH---HHHHHHHHHHhC
Confidence 2334 4566 89999966654321 11 5677888 8889999999999998 66666777775
Q ss_pred -CCcEEEecCCC
Q 040403 481 -GDNIIFASGSP 491 (623)
Q Consensus 481 -~Grai~AtGsP 491 (623)
.-+-+|++|.-
T Consensus 138 ~p~~~viG~gt~ 149 (315)
T PRK00066 138 FPKERVIGSGTS 149 (315)
T ss_pred CCHHHEeecCch
Confidence 33446666643
No 78
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.34 E-value=0.82 Score=48.97 Aligned_cols=139 Identities=12% Similarity=0.143 Sum_probs=90.9
Q ss_pred HHHHHHHHHhC--Cc---eeeecccCCCchHHHHHHHHhc--cCCccccCc--------chhHHHHHHHHHHHHHHhCCC
Q 040403 267 DEFMEAIFTRW--PN---VIVQFEDFQSKWAFKLLQRYRY--KYRMFNDDV--------QGTAGVAVAGLLGAVRAQGRS 331 (623)
Q Consensus 267 defv~av~~~~--P~---~lIqfEDf~~~nAf~lL~ryr~--~~~~FNDDi--------QGTaaV~lAgll~A~r~~g~~ 331 (623)
+||++.+.+.- |+ .++|+==...-+..++++.-.- .+=.||..- .+-.-+|-.|++.=++-.|.+
T Consensus 77 ~~l~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~aii~lL~~~~i~ 156 (301)
T PRK14194 77 ARLLALIAELNADPSVNGILLQLPLPAHIDEARVLQAINPLKDVDGFHSENVGGLSQGRDVLTPCTPSGCLRLLEDTCGD 156 (301)
T ss_pred HHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhccCchhccCccChhhhhHHhcCCCCCCCCcHHHHHHHHHHhCCC
Confidence 56777777664 54 3666542233334444443221 121222111 123456778888888999999
Q ss_pred CCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcc
Q 040403 332 MIDFPKQKIVVAGAG-SAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISR 410 (623)
Q Consensus 332 ~~~l~d~riv~~GAG-sAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~ 410 (623)
++.++|+|+|.| ..|..+|.+|... |. .+.+++++
T Consensus 157 ---l~Gk~V~vIG~s~ivG~PmA~~L~~~-----ga----------tVtv~~~~-------------------------- 192 (301)
T PRK14194 157 ---LTGKHAVVIGRSNIVGKPMAALLLQA-----HC----------SVTVVHSR-------------------------- 192 (301)
T ss_pred ---CCCCEEEEECCCCccHHHHHHHHHHC-----CC----------EEEEECCC--------------------------
Confidence 999999999996 9999999999874 73 46666653
Q ss_pred cccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecC
Q 040403 411 QGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMS 463 (623)
Q Consensus 411 ~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLS 463 (623)
..++.|+++ +.|++|=+-+.++.+++++++ +.-||.=.|
T Consensus 193 -----t~~l~e~~~--~ADIVIsavg~~~~v~~~~ik-------~GaiVIDvg 231 (301)
T PRK14194 193 -----STDAKALCR--QADIVVAAVGRPRLIDADWLK-------PGAVVIDVG 231 (301)
T ss_pred -----CCCHHHHHh--cCCEEEEecCChhcccHhhcc-------CCcEEEEec
Confidence 114777888 799999988889999887733 344565555
No 79
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=91.18 E-value=0.46 Score=50.07 Aligned_cols=48 Identities=23% Similarity=0.240 Sum_probs=36.9
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 320 GLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 320 gll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
|++.+++-.+.. +++.+++++|||.||-+|+-.|.+. |. ++|+++|+.
T Consensus 113 Gf~~~L~~~~~~---~~~k~vlilGaGGaarAi~~aL~~~-----g~---------~~i~i~nR~ 160 (283)
T PRK14027 113 GFGRGMEEGLPN---AKLDSVVQVGAGGVGNAVAYALVTH-----GV---------QKLQVADLD 160 (283)
T ss_pred HHHHHHHhcCcC---cCCCeEEEECCcHHHHHHHHHHHHC-----CC---------CEEEEEcCC
Confidence 455677654445 7789999999999999998777653 75 679999884
No 80
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.04 E-value=0.86 Score=48.47 Aligned_cols=130 Identities=13% Similarity=0.163 Sum_probs=85.3
Q ss_pred HHHHHHHHHhC--Cc---eeeecccCCCchHHHHHHHHh--ccCCccccCc--------chhHHHHHHHHHHHHHHhCCC
Q 040403 267 DEFMEAIFTRW--PN---VIVQFEDFQSKWAFKLLQRYR--YKYRMFNDDV--------QGTAGVAVAGLLGAVRAQGRS 331 (623)
Q Consensus 267 defv~av~~~~--P~---~lIqfEDf~~~nAf~lL~ryr--~~~~~FNDDi--------QGTaaV~lAgll~A~r~~g~~ 331 (623)
+||.+.+.++- |+ .++|+==...-+-.++++... +.+=.||..- .+-.-+|-.|++.=++-.+.+
T Consensus 76 ~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~aii~lL~~~~i~ 155 (285)
T PRK14189 76 AELLARIDELNRDPKIHGILVQLPLPKHIDSHKVIEAIAPEKDVDGFHVANAGALMTGQPLFRPCTPYGVMKMLESIGIP 155 (285)
T ss_pred HHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhhcCcccCcccCChhhhhHhhCCCCCCcCCCHHHHHHHHHHcCCC
Confidence 56777777664 54 366653222223333333322 1111222111 233456788888999999999
Q ss_pred CCCCCCceEEEeCcchH-HHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcc
Q 040403 332 MIDFPKQKIVVAGAGSA-GLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISR 410 (623)
Q Consensus 332 ~~~l~d~riv~~GAGsA-g~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~ 410 (623)
+++.+++++|.|.- |.-+|.+|... |. .+.+|+++
T Consensus 156 ---l~Gk~vvViGrs~iVGkPla~lL~~~-----~a----------tVt~~hs~-------------------------- 191 (285)
T PRK14189 156 ---LRGAHAVVIGRSNIVGKPMAMLLLQA-----GA----------TVTICHSK-------------------------- 191 (285)
T ss_pred ---CCCCEEEEECCCCccHHHHHHHHHHC-----CC----------EEEEecCC--------------------------
Confidence 99999999999988 99999998753 64 35555442
Q ss_pred cccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHH
Q 040403 411 QGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLE 447 (623)
Q Consensus 411 ~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 447 (623)
..+|.+.++ ++|++|-+.+.++.|+.++++
T Consensus 192 -----t~~l~~~~~--~ADIVV~avG~~~~i~~~~ik 221 (285)
T PRK14189 192 -----TRDLAAHTR--QADIVVAAVGKRNVLTADMVK 221 (285)
T ss_pred -----CCCHHHHhh--hCCEEEEcCCCcCccCHHHcC
Confidence 123667777 899999999999999996655
No 81
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=90.99 E-value=2 Score=47.31 Aligned_cols=116 Identities=17% Similarity=0.214 Sum_probs=82.4
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCC
Q 040403 312 GTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDR 391 (623)
Q Consensus 312 GTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r 391 (623)
..|=-+++.+|+..|-.|.. |.+.+|.|+|.|..|-.+|+.+... |+ ++..+|+. +
T Consensus 94 aVAE~~~~~lL~l~r~~g~~---L~gktvGIIG~G~IG~~vA~~l~a~-----G~----------~V~~~dp~------~ 149 (378)
T PRK15438 94 AVVEYVFSSLLMLAERDGFS---LHDRTVGIVGVGNVGRRLQARLEAL-----GI----------KTLLCDPP------R 149 (378)
T ss_pred HHHHHHHHHHHHHhccCCCC---cCCCEEEEECcCHHHHHHHHHHHHC-----CC----------EEEEECCc------c
Confidence 44555889999988888888 9999999999999999999999764 85 46777852 1
Q ss_pred CCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEe---ccC-----CCCCCCHHHHHHcccCCCCCCEEEecC
Q 040403 392 ENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLG---LSA-----VGGLFSKEVLEAMRGSTSTRPAIFAMS 463 (623)
Q Consensus 392 ~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG---~S~-----~~g~Ft~evv~~M~a~~~erPIIFaLS 463 (623)
..- .. .....+|.|+++ +.|+++= ++. .-+.|+++.++.| .+..|++=.|
T Consensus 150 ~~~-----------~~-----~~~~~~L~ell~--~sDiI~lh~PLt~~g~~~T~~li~~~~l~~m----k~gailIN~a 207 (378)
T PRK15438 150 ADR-----------GD-----EGDFRSLDELVQ--EADILTFHTPLFKDGPYKTLHLADEKLIRSL----KPGAILINAC 207 (378)
T ss_pred ccc-----------cc-----ccccCCHHHHHh--hCCEEEEeCCCCCCcccccccccCHHHHhcC----CCCcEEEECC
Confidence 100 00 012346999998 7898872 111 3488999999999 6778888766
Q ss_pred CCCCCCCCCHHHHh
Q 040403 464 NPTNNAECTPEEAF 477 (623)
Q Consensus 464 NPt~~~E~tpeda~ 477 (623)
. -+.-=|+|+
T Consensus 208 R----G~vVDe~AL 217 (378)
T PRK15438 208 R----GAVVDNTAL 217 (378)
T ss_pred C----chhcCHHHH
Confidence 5 444444444
No 82
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=90.96 E-value=1.5 Score=44.50 Aligned_cols=103 Identities=15% Similarity=0.170 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHhCC---------CCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 316 VAVAGLLGAVRAQGR---------SMIDFPKQKIVVAGAG-SAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 316 V~lAgll~A~r~~g~---------~~~~l~d~riv~~GAG-sAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
+|-.|++-=++..+. + ++.++++|+|-+ ..|.-+|.||... | ..+.+||++|
T Consensus 35 CTp~avi~lL~~~~i~~~~~~~~~~---l~GK~vvVIGrS~iVGkPla~lL~~~-----~----------AtVti~~~~~ 96 (197)
T cd01079 35 CTPLAIVKILEFLGIYNKILPYGNR---LYGKTITIINRSEVVGRPLAALLAND-----G----------ARVYSVDING 96 (197)
T ss_pred CCHHHHHHHHHHhCCcccccccCCC---CCCCEEEEECCCccchHHHHHHHHHC-----C----------CEEEEEecCc
Confidence 344555555555543 6 999999999986 4677777777652 5 4578999999
Q ss_pred cccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCC-CCHHHHHH
Q 040403 386 LITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGL-FSKEVLEA 448 (623)
Q Consensus 386 Li~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~-Ft~evv~~ 448 (623)
.....+.....|.+ +.. .....+|.|.++ ++|++|-.-|.++. ++.|+|+.
T Consensus 97 ~~~~~~~~~~~hs~-----t~~-----~~~~~~l~~~~~--~ADIVIsAvG~~~~~i~~d~ik~ 148 (197)
T cd01079 97 IQVFTRGESIRHEK-----HHV-----TDEEAMTLDCLS--QSDVVITGVPSPNYKVPTELLKD 148 (197)
T ss_pred cccccccccccccc-----ccc-----cchhhHHHHHhh--hCCEEEEccCCCCCccCHHHcCC
Confidence 87754432111100 000 001123889999 89999999999998 89988873
No 83
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.96 E-value=1.2 Score=47.21 Aligned_cols=131 Identities=14% Similarity=0.175 Sum_probs=90.1
Q ss_pred HHHHHHHHHhC--Cc---eeeecc---cCCCchHHHHHHHHhcc--C------CccccCcchhHHHHHHHHHHHHHHhCC
Q 040403 267 DEFMEAIFTRW--PN---VIVQFE---DFQSKWAFKLLQRYRYK--Y------RMFNDDVQGTAGVAVAGLLGAVRAQGR 330 (623)
Q Consensus 267 defv~av~~~~--P~---~lIqfE---Df~~~nAf~lL~ryr~~--~------~~FNDDiQGTaaV~lAgll~A~r~~g~ 330 (623)
+||.+.+.++- |+ .++|+= ++.....++.++-.+|- + ..|.++..+-.-+|-+|++.=++-.|.
T Consensus 74 ~~l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~g~~~~~~PcTp~avi~lL~~y~i 153 (282)
T PRK14166 74 NELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDGFHPINVGYLNLGLESGFLPCTPLGVMKLLKAYEI 153 (282)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhhHHHhcCCCCCCcCCCHHHHHHHHHHhCC
Confidence 67888888774 65 377764 55444444444333331 1 123332235566788888888999999
Q ss_pred CCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhc
Q 040403 331 SMIDFPKQKIVVAGAG-SAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEIS 409 (623)
Q Consensus 331 ~~~~l~d~riv~~GAG-sAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~ 409 (623)
+ ++.+++|++|-+ ..|.-+|.||... |. .+.+|+|+
T Consensus 154 ~---l~Gk~vvVvGrS~iVGkPla~lL~~~-----~a----------tVt~chs~------------------------- 190 (282)
T PRK14166 154 D---LEGKDAVIIGASNIVGRPMATMLLNA-----GA----------TVSVCHIK------------------------- 190 (282)
T ss_pred C---CCCCEEEEECCCCcchHHHHHHHHHC-----CC----------EEEEeCCC-------------------------
Confidence 9 999999999986 5788888887642 53 35566653
Q ss_pred ccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHH
Q 040403 410 RQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEA 448 (623)
Q Consensus 410 ~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 448 (623)
..+|.+.++ ++|++|-+.|.++.||+++|+.
T Consensus 191 ------T~nl~~~~~--~ADIvIsAvGkp~~i~~~~vk~ 221 (282)
T PRK14166 191 ------TKDLSLYTR--QADLIIVAAGCVNLLRSDMVKE 221 (282)
T ss_pred ------CCCHHHHHh--hCCEEEEcCCCcCccCHHHcCC
Confidence 123677777 8999999999999999998873
No 84
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=90.89 E-value=0.52 Score=49.65 Aligned_cols=126 Identities=15% Similarity=0.277 Sum_probs=76.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCC-CCCChhhHHhHHHhhhhcccccCCCC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDR-ENIDPDAKPFARKVNEISRQGLWEGA 417 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r-~~l~~~~~~fA~~~~~~~~~~~~~~~ 417 (623)
||.|+|+|.+|..+|..|+.. |+. .+|+++|++-=..+.- .+|.+.. .+.. ... .-...
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~-----g~~--------~ei~l~D~~~~~~~~~a~dL~~~~-~~~~--~~~----~i~~~ 61 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQ-----GIA--------DELVLIDINEEKAEGEALDLEDAL-AFLP--SPV----KIKAG 61 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhc-----CCC--------CEEEEEeCCcchhhHhHhhHHHHh-hccC--CCe----EEEcC
Confidence 899999999999999987663 652 4699999852111100 0111100 0000 000 00112
Q ss_pred CHHHHHhhcCCcEEEeccCCC---CC-----------CCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccC--
Q 040403 418 SLVEVVQQVKPDVLLGLSAVG---GL-----------FSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVG-- 481 (623)
Q Consensus 418 ~L~e~V~~vkptvLIG~S~~~---g~-----------Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~-- 481 (623)
+. +.++ +.|++|=+.+.+ |- .=+++.+.| .+++..-+|+-.|||. .+...-+++++.
T Consensus 62 ~~-~~l~--~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i-~~~~~~~~vivvsNP~---d~~~~~~~~~~g~p 134 (306)
T cd05291 62 DY-SDCK--DADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKI-KASGFDGIFLVASNPV---DVITYVVQKLSGLP 134 (306)
T ss_pred CH-HHhC--CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHhCCCeEEEEecChH---HHHHHHHHHHhCcC
Confidence 33 3455 899999777764 21 115777888 7889999999999998 566666666641
Q ss_pred CcEEEecCCC
Q 040403 482 DNIIFASGSP 491 (623)
Q Consensus 482 Grai~AtGsP 491 (623)
-+-+|++|.-
T Consensus 135 ~~~v~g~gt~ 144 (306)
T cd05291 135 KNRVIGTGTS 144 (306)
T ss_pred HHHEeeccch
Confidence 1346777654
No 85
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=90.61 E-value=0.89 Score=45.29 Aligned_cols=36 Identities=19% Similarity=0.300 Sum_probs=32.6
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
|++.+|+|+|+|..|.-+|+.|+.+ |+ ++|+++|.+
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~-----Gv---------~~i~lvD~d 54 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGA-----GV---------GTIVIVDDD 54 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHc-----CC---------CeEEEecCC
Confidence 8899999999999999999998875 85 789999996
No 86
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.61 E-value=1 Score=47.87 Aligned_cols=130 Identities=14% Similarity=0.200 Sum_probs=87.2
Q ss_pred HHHHHHHHHhC--Cc---eeeecc---cCCCchHHHHHHHHhccCCcccc--------CcchhHHHHHHHHHHHHHHhCC
Q 040403 267 DEFMEAIFTRW--PN---VIVQFE---DFQSKWAFKLLQRYRYKYRMFND--------DVQGTAGVAVAGLLGAVRAQGR 330 (623)
Q Consensus 267 defv~av~~~~--P~---~lIqfE---Df~~~nAf~lL~ryr~~~~~FND--------DiQGTaaV~lAgll~A~r~~g~ 330 (623)
+|+.+.+.++- |+ .++|+= .+.....++.++-.+| +=.||. ...+-.-+|-+|++.=++-.+.
T Consensus 75 ~~l~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~KD-VDGl~~~n~g~l~~g~~~~~PcTp~avi~lL~~~~i 153 (281)
T PRK14183 75 KEILETIAMMNNNPNIDGILVQLPLPKHIDTTKILEAIDPKKD-VDGFHPYNVGRLVTGLDGFVPCTPLGVMELLEEYEI 153 (281)
T ss_pred HHHHHHHHHHhCCCccCeEEEeCCCCCCCCHHHHHhccCchhc-ccccChhhhhHHhcCCCCCCCCcHHHHHHHHHHcCC
Confidence 56777777774 54 377754 3333333333333333 212221 1133456678888888899999
Q ss_pred CCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhc
Q 040403 331 SMIDFPKQKIVVAGAG-SAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEIS 409 (623)
Q Consensus 331 ~~~~l~d~riv~~GAG-sAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~ 409 (623)
+ ++++++||+|-+ ..|.-+|.+|... |. .+.+|+++
T Consensus 154 ~---l~Gk~vvViGrS~~VG~Pla~lL~~~-----~A----------tVti~hs~------------------------- 190 (281)
T PRK14183 154 D---VKGKDVCVVGASNIVGKPMAALLLNA-----NA----------TVDICHIF------------------------- 190 (281)
T ss_pred C---CCCCEEEEECCCCcchHHHHHHHHHC-----CC----------EEEEeCCC-------------------------
Confidence 8 999999999998 8899999888652 53 34455542
Q ss_pred ccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHH
Q 040403 410 RQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEA 448 (623)
Q Consensus 410 ~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 448 (623)
..+|.+.++ ++|++|-+.|.++.|+.++|+.
T Consensus 191 ------T~~l~~~~~--~ADIvV~AvGkp~~i~~~~vk~ 221 (281)
T PRK14183 191 ------TKDLKAHTK--KADIVIVGVGKPNLITEDMVKE 221 (281)
T ss_pred ------CcCHHHHHh--hCCEEEEecCcccccCHHHcCC
Confidence 123666777 8999999999999999998873
No 87
>PRK08223 hypothetical protein; Validated
Probab=90.52 E-value=0.64 Score=49.44 Aligned_cols=135 Identities=13% Similarity=0.130 Sum_probs=81.6
Q ss_pred HHHHHHHhccCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhh
Q 040403 293 FKLLQRYRYKYRMFNDDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFD 372 (623)
Q Consensus 293 f~lL~ryr~~~~~FNDDiQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~e 372 (623)
|..-++|..++..|..+-| .+ |++.||+|+|+|..|.-+|..|+.+ |+
T Consensus 4 ~~~~~~ysRq~~~iG~e~Q------------------~k---L~~s~VlIvG~GGLGs~va~~LA~a-----GV------ 51 (287)
T PRK08223 4 FDYDEAFCRNLGWITPTEQ------------------QR---LRNSRVAIAGLGGVGGIHLLTLARL-----GI------ 51 (287)
T ss_pred ccHHHHHhhhhhhcCHHHH------------------HH---HhcCCEEEECCCHHHHHHHHHHHHh-----CC------
Confidence 5566777766666544433 34 8899999999999999999999886 96
Q ss_pred hccCeEEEEccCCcccCC--C------CCCChhhHHhHHHh-hhhcccc----c---CCCCCHHHHHhhcCCcEEEeccC
Q 040403 373 SARSQFWVVDAKGLITED--R------ENIDPDAKPFARKV-NEISRQG----L---WEGASLVEVVQQVKPDVLLGLSA 436 (623)
Q Consensus 373 eA~~~i~lvD~~GLi~~~--r------~~l~~~~~~fA~~~-~~~~~~~----~---~~~~~L~e~V~~vkptvLIG~S~ 436 (623)
++|.++|.+=+=..+ | .++...|..-|+.. .+..++. . -...++.+.++ +.|++|=++-
T Consensus 52 ---G~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~--~~DlVvD~~D 126 (287)
T PRK08223 52 ---GKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEGIGKENADAFLD--GVDVYVDGLD 126 (287)
T ss_pred ---CeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecccCccCHHHHHh--CCCEEEECCC
Confidence 789999987332221 1 12333343333221 1111110 0 01245777777 7788874432
Q ss_pred CCCCCCHHHHHHcccCCCCCCEEEecCCC
Q 040403 437 VGGLFSKEVLEAMRGSTSTRPAIFAMSNP 465 (623)
Q Consensus 437 ~~g~Ft~evv~~M~a~~~erPIIFaLSNP 465 (623)
....=+.-.|-.. |.....|.|.+-..-
T Consensus 127 ~~~~~~r~~ln~~-c~~~~iP~V~~~~~g 154 (287)
T PRK08223 127 FFEFDARRLVFAA-CQQRGIPALTAAPLG 154 (287)
T ss_pred CCcHHHHHHHHHH-HHHcCCCEEEEeccC
Confidence 1101156667777 777788998875443
No 88
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=90.49 E-value=1.9 Score=41.93 Aligned_cols=98 Identities=19% Similarity=0.195 Sum_probs=67.4
Q ss_pred HHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHh
Q 040403 326 RAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKV 405 (623)
Q Consensus 326 r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~ 405 (623)
+..+.. |.+++|.|+|.|..|..||+++... |+ +++.+|+..- ....+.
T Consensus 28 ~~~~~~---l~g~tvgIiG~G~IG~~vA~~l~~f-----G~----------~V~~~d~~~~----------~~~~~~--- 76 (178)
T PF02826_consen 28 RFPGRE---LRGKTVGIIGYGRIGRAVARRLKAF-----GM----------RVIGYDRSPK----------PEEGAD--- 76 (178)
T ss_dssp TTTBS----STTSEEEEESTSHHHHHHHHHHHHT-----T-----------EEEEEESSCH----------HHHHHH---
T ss_pred CCCccc---cCCCEEEEEEEcCCcCeEeeeeecC-----Cc----------eeEEecccCC----------hhhhcc---
Confidence 345566 9999999999999999999999864 84 6888888521 111121
Q ss_pred hhhcccccCCCCCHHHHHhhcCCcEEEecc----CCCCCCCHHHHHHcccCCCCCCEEEecCCC
Q 040403 406 NEISRQGLWEGASLVEVVQQVKPDVLLGLS----AVGGLFSKEVLEAMRGSTSTRPAIFAMSNP 465 (623)
Q Consensus 406 ~~~~~~~~~~~~~L~e~V~~vkptvLIG~S----~~~g~Ft~evv~~M~a~~~erPIIFaLSNP 465 (623)
.. .-...+|.|+++ +.|+++=.- ..-+.|+++.++.| .+.-++.-.|.-
T Consensus 77 ~~-----~~~~~~l~ell~--~aDiv~~~~plt~~T~~li~~~~l~~m----k~ga~lvN~aRG 129 (178)
T PF02826_consen 77 EF-----GVEYVSLDELLA--QADIVSLHLPLTPETRGLINAEFLAKM----KPGAVLVNVARG 129 (178)
T ss_dssp HT-----TEEESSHHHHHH--H-SEEEE-SSSSTTTTTSBSHHHHHTS----TTTEEEEESSSG
T ss_pred cc-----cceeeehhhhcc--hhhhhhhhhccccccceeeeeeeeecc----ccceEEEeccch
Confidence 11 113457999999 789888532 12489999999999 566677766653
No 89
>PRK05086 malate dehydrogenase; Provisional
Probab=90.48 E-value=0.82 Score=48.71 Aligned_cols=105 Identities=22% Similarity=0.309 Sum_probs=66.8
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCC-CCCChhhHHhHHHhhhhcccccCC
Q 040403 338 QKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDR-ENIDPDAKPFARKVNEISRQGLWE 415 (623)
Q Consensus 338 ~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r-~~l~~~~~~fA~~~~~~~~~~~~~ 415 (623)
.||+|+|| |..|..+|.+|... .+. ...+.++|++-. ..+. -|+.+. +....+. ...
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~----~~~--------~~el~L~d~~~~-~~g~alDl~~~-----~~~~~i~---~~~ 59 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQ----LPA--------GSELSLYDIAPV-TPGVAVDLSHI-----PTAVKIK---GFS 59 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC----CCC--------ccEEEEEecCCC-CcceehhhhcC-----CCCceEE---EeC
Confidence 38999999 99999998877542 122 256899997522 1110 012110 0000000 001
Q ss_pred CCCHHHHHhhcCCcEEEeccCCC---CC-----------CCHHHHHHcccCCCCCCEEEecCCCC
Q 040403 416 GASLVEVVQQVKPDVLLGLSAVG---GL-----------FSKEVLEAMRGSTSTRPAIFAMSNPT 466 (623)
Q Consensus 416 ~~~L~e~V~~vkptvLIG~S~~~---g~-----------Ft~evv~~M~a~~~erPIIFaLSNPt 466 (623)
..++.++++ +.|++|=+.|.+ |. ..+++++.| .+++.+.+|+-.|||.
T Consensus 60 ~~d~~~~l~--~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i-~~~~~~~ivivvsNP~ 121 (312)
T PRK05086 60 GEDPTPALE--GADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKV-AKTCPKACIGIITNPV 121 (312)
T ss_pred CCCHHHHcC--CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHhCCCeEEEEccCch
Confidence 346778888 799888666643 31 457899999 8899999999999998
No 90
>PLN02928 oxidoreductase family protein
Probab=90.39 E-value=3 Score=45.14 Aligned_cols=123 Identities=16% Similarity=0.262 Sum_probs=78.2
Q ss_pred hhHHHHHHHHHHHHHHh----------------CCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhcc
Q 040403 312 GTAGVAVAGLLGAVRAQ----------------GRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSAR 375 (623)
Q Consensus 312 GTaaV~lAgll~A~r~~----------------g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~ 375 (623)
.+|--+++.+|+.+|-. +.. |.++++.|+|.|..|..+|+.+... |+
T Consensus 121 ~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~~~~---l~gktvGIiG~G~IG~~vA~~l~af-----G~--------- 183 (347)
T PLN02928 121 SCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDT---LFGKTVFILGYGAIGIELAKRLRPF-----GV--------- 183 (347)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccC---CCCCEEEEECCCHHHHHHHHHHhhC-----CC---------
Confidence 45566677777666632 334 8999999999999999999999764 85
Q ss_pred CeEEEEccCCcccCCCCC-CChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEecc----CCCCCCCHHHHHHcc
Q 040403 376 SQFWVVDAKGLITEDREN-IDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLS----AVGGLFSKEVLEAMR 450 (623)
Q Consensus 376 ~~i~lvD~~GLi~~~r~~-l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S----~~~g~Ft~evv~~M~ 450 (623)
+++.+|+.. ...... +. .+..... ..... .....+|.|+++ +.|+++-.- ...+.|+++.+..|
T Consensus 184 -~V~~~dr~~--~~~~~~~~~-~~~~~~~---~~~~~-~~~~~~L~ell~--~aDiVvl~lPlt~~T~~li~~~~l~~M- 252 (347)
T PLN02928 184 -KLLATRRSW--TSEPEDGLL-IPNGDVD---DLVDE-KGGHEDIYEFAG--EADIVVLCCTLTKETAGIVNDEFLSSM- 252 (347)
T ss_pred -EEEEECCCC--Chhhhhhhc-ccccccc---ccccc-cCcccCHHHHHh--hCCEEEECCCCChHhhcccCHHHHhcC-
Confidence 577788741 000000 00 0000000 00000 113458999999 799998642 23589999999999
Q ss_pred cCCCCCCEEEecCCC
Q 040403 451 GSTSTRPAIFAMSNP 465 (623)
Q Consensus 451 a~~~erPIIFaLSNP 465 (623)
.+..+|.=.|.-
T Consensus 253 ---k~ga~lINvaRG 264 (347)
T PLN02928 253 ---KKGALLVNIARG 264 (347)
T ss_pred ---CCCeEEEECCCc
Confidence 566788776653
No 91
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.16 E-value=0.89 Score=48.21 Aligned_cols=129 Identities=15% Similarity=0.237 Sum_probs=85.5
Q ss_pred HHHHHHHHHhC--Cc---eeeecccCCCchHHHHHHH---Hhcc--C------CccccCcchhHHHHHHHHHHHHHHhCC
Q 040403 267 DEFMEAIFTRW--PN---VIVQFEDFQSKWAFKLLQR---YRYK--Y------RMFNDDVQGTAGVAVAGLLGAVRAQGR 330 (623)
Q Consensus 267 defv~av~~~~--P~---~lIqfEDf~~~nAf~lL~r---yr~~--~------~~FNDDiQGTaaV~lAgll~A~r~~g~ 330 (623)
+||.+.++++- |+ .++|+==.+.-+..++++. .+|- + ..|..+ .+-.-+|-.|++.=++-.+.
T Consensus 70 ~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~v~~~I~p~KDVDGl~~~n~g~l~~~~-~~~~PcTp~av~~ll~~~~i 148 (279)
T PRK14178 70 RTVLERIRRLNEDPDINGILVQLPLPKGVDTERVIAAILPEKDVDGFHPLNLGRLVSGL-PGFAPCTPNGIMTLLHEYKI 148 (279)
T ss_pred HHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcccCcccCChhhHHHHhCCC-CCCCCCCHHHHHHHHHHcCC
Confidence 56777777764 54 3677542223333333333 2220 1 111111 23455677888888888898
Q ss_pred CCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhc
Q 040403 331 SMIDFPKQKIVVAGAG-SAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEIS 409 (623)
Q Consensus 331 ~~~~l~d~riv~~GAG-sAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~ 409 (623)
+ |++.+++++|-+ .-|.-+|.++... | ..+..++++
T Consensus 149 ~---l~Gk~V~ViGrs~~vGrpla~lL~~~-----~----------atVtv~hs~------------------------- 185 (279)
T PRK14178 149 S---IAGKRAVVVGRSIDVGRPMAALLLNA-----D----------ATVTICHSK------------------------- 185 (279)
T ss_pred C---CCCCEEEEECCCccccHHHHHHHHhC-----C----------CeeEEEecC-------------------------
Confidence 8 999999999999 8888888887653 5 345666653
Q ss_pred ccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHH
Q 040403 410 RQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLE 447 (623)
Q Consensus 410 ~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 447 (623)
..+|.+.++ ++|++|++-+.++.+|+++|+
T Consensus 186 ------t~~L~~~~~--~ADIvI~Avgk~~lv~~~~vk 215 (279)
T PRK14178 186 ------TENLKAELR--QADILVSAAGKAGFITPDMVK 215 (279)
T ss_pred ------hhHHHHHHh--hCCEEEECCCcccccCHHHcC
Confidence 013777888 899999999999999998874
No 92
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=90.06 E-value=0.41 Score=49.15 Aligned_cols=127 Identities=12% Similarity=0.155 Sum_probs=69.0
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLW 414 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~ 414 (623)
|++.+|+|+|+|..|.-+|+.|+.+ |+ .+|.++|.+=+ . -++|+.+ .++.. +++ +..
T Consensus 9 L~~~~VlVvG~GGvGs~va~~Lar~-----GV---------g~i~LvD~D~V-~--~sNlnRq--~~~~~-~di---G~~ 65 (231)
T cd00755 9 LRNAHVAVVGLGGVGSWAAEALARS-----GV---------GKLTLIDFDVV-C--VSNLNRQ--IHALL-STV---GKP 65 (231)
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHc-----CC---------CEEEEECCCEE-C--chhhcch--hCcCh-hhC---CCc
Confidence 7889999999999999999999885 95 78999998722 1 1233221 22211 111 011
Q ss_pred CCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccCCcEEEecCC
Q 040403 415 EGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGS 490 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~Grai~AtGs 490 (623)
...-+.+-++.+.|++=|-.. ..-++++-+... -...-.=||-+.-|+..+... -+ +.+..|.-++.+|+
T Consensus 66 Kae~~~~~l~~inP~~~V~~~--~~~i~~~~~~~l-~~~~~D~VvdaiD~~~~k~~L-~~--~c~~~~ip~I~s~g 135 (231)
T cd00755 66 KVEVMAERIRDINPECEVDAV--EEFLTPDNSEDL-LGGDPDFVVDAIDSIRAKVAL-IA--YCRKRKIPVISSMG 135 (231)
T ss_pred HHHHHHHHHHHHCCCcEEEEe--eeecCHhHHHHH-hcCCCCEEEEcCCCHHHHHHH-HH--HHHHhCCCEEEEeC
Confidence 223356666677777665443 234555444443 111122345555666544321 12 22333555555554
No 93
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=90.00 E-value=1.5 Score=43.86 Aligned_cols=125 Identities=13% Similarity=0.154 Sum_probs=71.2
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWE 415 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~ 415 (623)
+..||.|+|+|..|..++..+... |... .++++++++. + .+..+.+++ .+ +...
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~-----~~~~------~~~i~~~~~~--------~-~~~~~~~~~---~~---~~~~ 56 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKT-----SKEY------IEEIIVSNRS--------N-VEKLDQLQA---RY---NVST 56 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC-----CCCC------cCeEEEECCC--------C-HHHHHHHHH---Hc---CcEE
Confidence 467999999999999998888753 5211 2446666542 0 111122321 11 0122
Q ss_pred CCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccC-CcEEEecCCCCCc
Q 040403 416 GASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVG-DNIIFASGSPFKD 494 (623)
Q Consensus 416 ~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~-Grai~AtGsPF~p 494 (623)
..++.++++ +.|++| ++..+.. -+++++.+ +.+-...+|+.++.-.+ .+..-+|.+ +..++-+| |-.+
T Consensus 57 ~~~~~~~~~--~~DiVi-iavp~~~-~~~v~~~l-~~~~~~~~vis~~~gi~-----~~~l~~~~~~~~~v~r~~-Pn~a 125 (245)
T PRK07634 57 TTDWKQHVT--SVDTIV-LAMPPSA-HEELLAEL-SPLLSNQLVVTVAAGIG-----PSYLEERLPKGTPVAWIM-PNTA 125 (245)
T ss_pred eCChHHHHh--cCCEEE-EecCHHH-HHHHHHHH-HhhccCCEEEEECCCCC-----HHHHHHHcCCCCeEEEEC-CcHH
Confidence 356888887 678777 4434444 48899988 54333457777777653 334444443 34455555 4333
Q ss_pred ccc
Q 040403 495 VDL 497 (623)
Q Consensus 495 v~~ 497 (623)
.++
T Consensus 126 ~~v 128 (245)
T PRK07634 126 AEI 128 (245)
T ss_pred HHH
Confidence 443
No 94
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.92 E-value=1.2 Score=47.31 Aligned_cols=84 Identities=15% Similarity=0.211 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCC
Q 040403 313 TAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAG-SAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDR 391 (623)
Q Consensus 313 TaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAG-sAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r 391 (623)
-.-+|-.|++.-++-.|.+ +++.+++|+|.+ ..|.-+|.||... |. .+.+|+++
T Consensus 137 ~~PcTp~av~~lL~~~~i~---l~Gk~vvViGrS~iVG~Pla~lL~~~-----~a----------tVt~chs~------- 191 (284)
T PRK14190 137 FLPCTPHGILELLKEYNID---ISGKHVVVVGRSNIVGKPVGQLLLNE-----NA----------TVTYCHSK------- 191 (284)
T ss_pred CCCCCHHHHHHHHHHcCCC---CCCCEEEEECCCCccHHHHHHHHHHC-----CC----------EEEEEeCC-------
Confidence 3556788888999999999 999999999985 5788888888652 53 45666542
Q ss_pred CCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHH
Q 040403 392 ENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLE 447 (623)
Q Consensus 392 ~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 447 (623)
..+|.+.++ ++|++|.+.|.++.|+.++|+
T Consensus 192 ------------------------t~~l~~~~~--~ADIvI~AvG~p~~i~~~~ik 221 (284)
T PRK14190 192 ------------------------TKNLAELTK--QADILIVAVGKPKLITADMVK 221 (284)
T ss_pred ------------------------chhHHHHHH--hCCEEEEecCCCCcCCHHHcC
Confidence 123777888 899999999999999998886
No 95
>PRK08605 D-lactate dehydrogenase; Validated
Probab=89.78 E-value=3.2 Score=44.53 Aligned_cols=92 Identities=17% Similarity=0.231 Sum_probs=63.7
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLW 414 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~ 414 (623)
|.+++|.|+|.|..|..+|+.+... .|+ ++|.+|+.. ......+ ..
T Consensus 144 l~g~~VgIIG~G~IG~~vA~~L~~~----~g~----------~V~~~d~~~---------~~~~~~~-----------~~ 189 (332)
T PRK08605 144 IKDLKVAVIGTGRIGLAVAKIFAKG----YGS----------DVVAYDPFP---------NAKAATY-----------VD 189 (332)
T ss_pred eCCCEEEEECCCHHHHHHHHHHHhc----CCC----------EEEEECCCc---------cHhHHhh-----------cc
Confidence 8999999999999999999998532 253 588888742 0000011 11
Q ss_pred CCCCHHHHHhhcCCcEEEecc----CCCCCCCHHHHHHcccCCCCCCEEEecCCCC
Q 040403 415 EGASLVEVVQQVKPDVLLGLS----AVGGLFSKEVLEAMRGSTSTRPAIFAMSNPT 466 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLIG~S----~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt 466 (623)
...+|.|+++ +.|+++=+- ...++|+++.++.| .+..++.=.|.=.
T Consensus 190 ~~~~l~ell~--~aDvIvl~lP~t~~t~~li~~~~l~~m----k~gailIN~sRG~ 239 (332)
T PRK08605 190 YKDTIEEAVE--GADIVTLHMPATKYNHYLFNADLFKHF----KKGAVFVNCARGS 239 (332)
T ss_pred ccCCHHHHHH--hCCEEEEeCCCCcchhhhcCHHHHhcC----CCCcEEEECCCCc
Confidence 2347999998 789888542 12467888889999 5677888777633
No 96
>PRK07680 late competence protein ComER; Validated
Probab=89.67 E-value=1.2 Score=45.86 Aligned_cols=98 Identities=15% Similarity=0.279 Sum_probs=59.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCC-CcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGN-NESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGA 417 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gl-s~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~ 417 (623)
+|.|+|+|..|..+|..|... |. .. .+++++|++ .+....++. .+.+ .....
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~-----g~~~~-------~~v~v~~r~----------~~~~~~~~~---~~~g--~~~~~ 54 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLES-----GAVKP-------SQLTITNRT----------PAKAYHIKE---RYPG--IHVAK 54 (273)
T ss_pred EEEEECccHHHHHHHHHHHHC-----CCCCc-------ceEEEECCC----------HHHHHHHHH---HcCC--eEEEC
Confidence 699999999999999888764 62 22 568888774 111122221 1000 11234
Q ss_pred CHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCC
Q 040403 418 SLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTN 467 (623)
Q Consensus 418 ~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~ 467 (623)
+..++++ ++|++| ++. +....+++++.++....+..+|..++|+.+
T Consensus 55 ~~~~~~~--~aDiVi-lav-~p~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 55 TIEEVIS--QSDLIF-ICV-KPLDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred CHHHHHH--hCCEEE-Eec-CHHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 6777777 678776 332 233357888887323345678889998763
No 97
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.66 E-value=3.7 Score=43.96 Aligned_cols=134 Identities=11% Similarity=0.142 Sum_probs=89.2
Q ss_pred HHHHHHHHHhC--Cc---eeeecccCCCchHHHHHHHHh--ccCCccccCc----------chhHHHHHHHHHHHHHHhC
Q 040403 267 DEFMEAIFTRW--PN---VIVQFEDFQSKWAFKLLQRYR--YKYRMFNDDV----------QGTAGVAVAGLLGAVRAQG 329 (623)
Q Consensus 267 defv~av~~~~--P~---~lIqfEDf~~~nAf~lL~ryr--~~~~~FNDDi----------QGTaaV~lAgll~A~r~~g 329 (623)
+||.+.+++.- |+ .++|+==.+.-|..++++... +.+=.||..- .+-.-+|-.|++.=++..+
T Consensus 75 ~el~~~I~~lN~D~~V~GIlvq~Plp~~id~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~ail~ll~~y~ 154 (295)
T PRK14174 75 EHLLKKIEDLNNDPDVHGILVQQPLPKQIDEFAVTLAIDPAKDVDGFHPENLGRLVMGHLDKCFVSCTPYGILELLGRYN 154 (295)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccChhhHHHHhcCCCCCCcCCCCHHHHHHHHHHhC
Confidence 57777777774 54 477765444555555555432 1222233221 2223456778888889899
Q ss_pred CCCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhh
Q 040403 330 RSMIDFPKQKIVVAGAG-SAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEI 408 (623)
Q Consensus 330 ~~~~~l~d~riv~~GAG-sAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~ 408 (623)
.+ ++++++||+|.+ ..|.-+|.||...+.++ | ..+..+.++
T Consensus 155 i~---l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~-~----------atVt~~hs~------------------------ 196 (295)
T PRK14174 155 IE---TKGKHCVVVGRSNIVGKPMANLMLQKLKES-N----------CTVTICHSA------------------------ 196 (295)
T ss_pred CC---CCCCEEEEECCCCcchHHHHHHHHhccccC-C----------CEEEEEeCC------------------------
Confidence 88 999999999986 57888888886532222 2 345555542
Q ss_pred cccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHH
Q 040403 409 SRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLE 447 (623)
Q Consensus 409 ~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 447 (623)
..+|.+.++ ++|++|+..+.++.|++++|+
T Consensus 197 -------t~~l~~~~~--~ADIvI~Avg~~~li~~~~vk 226 (295)
T PRK14174 197 -------TKDIPSYTR--QADILIAAIGKARFITADMVK 226 (295)
T ss_pred -------chhHHHHHH--hCCEEEEecCccCccCHHHcC
Confidence 123777888 899999999999999998885
No 98
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=89.39 E-value=15 Score=41.18 Aligned_cols=195 Identities=17% Similarity=0.237 Sum_probs=127.0
Q ss_pred CCCCchhhhHhHHHHHHHHHHhC-CceeeecccCCCch--HHHHHHHHhccC-----Ccc----------ccCcchhHHH
Q 040403 255 HRLDGDEYVSVIDEFMEAIFTRW-PNVIVQFEDFQSKW--AFKLLQRYRYKY-----RMF----------NDDVQGTAGV 316 (623)
Q Consensus 255 ~Rv~g~~Y~~~vdefv~av~~~~-P~~lIqfEDf~~~n--Af~lL~ryr~~~-----~~F----------NDDiQGTaaV 316 (623)
+..+..|-..|...|++++...- |+.-|-=+|++..- =--+.+.|+.-. ++| .+----||-=
T Consensus 110 k~~S~~E~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~dey~~i~g~~~~gv~TGKp~~~GGS~~r~~aTg~G 189 (411)
T COG0334 110 KGLSDGELERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDEYSKIVGNSAPGVFTGKPLELGGSLGRSEATGYG 189 (411)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHhhhhhcCCCCcceecCCcccccCCCCCCccccee
Confidence 44678888999999999999988 99999999998632 122455555421 111 1222234433
Q ss_pred HHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCCh
Q 040403 317 AVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDP 396 (623)
Q Consensus 317 ~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~ 396 (623)
+.-++-.+++..|.+ |+..||.|-|-|..|.-.|+.+.+. |. +=+-+=|++|.|++. ..|+.
T Consensus 190 v~~~~~~a~~~~g~~---l~G~rVaVQG~GNVg~~aa~~l~~~-----GA---------kvva~sds~g~i~~~-~Gld~ 251 (411)
T COG0334 190 VFYAIREALKALGDD---LEGARVAVQGFGNVGQYAAEKLHEL-----GA---------KVVAVSDSKGGIYDE-DGLDV 251 (411)
T ss_pred hHHHHHHHHHHcCCC---cCCCEEEEECccHHHHHHHHHHHHc-----CC---------EEEEEEcCCCceecC-CCCCH
Confidence 333444888899998 9999999999999999888888764 73 457778999988876 33554
Q ss_pred hhHHhHHHhh-hhccc-ccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCC-CCCCCCCCH
Q 040403 397 DAKPFARKVN-EISRQ-GLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSN-PTNNAECTP 473 (623)
Q Consensus 397 ~~~~fA~~~~-~~~~~-~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSN-Pt~~~E~tp 473 (623)
.+....+... ..... ......+ |.+-.+..||||=+. ..+..|++-.+..||+ +|.=-+| ||. ..+
T Consensus 252 ~~l~~~~~~~~~v~~~~ga~~i~~--~e~~~~~cDIl~PcA-~~n~I~~~na~~l~ak-----~V~EgAN~P~t---~eA 320 (411)
T COG0334 252 EALLELKERRGSVAEYAGAEYITN--EELLEVDCDILIPCA-LENVITEDNADQLKAK-----IVVEGANGPTT---PEA 320 (411)
T ss_pred HHHHHHhhhhhhHHhhcCceEccc--cccccccCcEEcccc-cccccchhhHHHhhhc-----EEEeccCCCCC---HHH
Confidence 4332211100 01000 0111111 334456799999777 6799999999999544 8888888 773 344
Q ss_pred HHHhc
Q 040403 474 EEAFS 478 (623)
Q Consensus 474 eda~~ 478 (623)
++.+.
T Consensus 321 ~~i~~ 325 (411)
T COG0334 321 DEILL 325 (411)
T ss_pred HHHHH
Confidence 45554
No 99
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=89.30 E-value=0.91 Score=47.22 Aligned_cols=49 Identities=22% Similarity=0.398 Sum_probs=36.8
Q ss_pred HHHHHHHHH-hCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 319 AGLLGAVRA-QGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 319 Agll~A~r~-~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.|++++++- .+.. +++.+++|+|+|.+|-+|+..|... |. .+|+++++.
T Consensus 107 ~G~~~~l~~~~~~~---~~~k~vlVlGaGg~a~ai~~aL~~~-----g~---------~~V~v~~R~ 156 (278)
T PRK00258 107 IGFVRALEERLGVD---LKGKRILILGAGGAARAVILPLLDL-----GV---------AEITIVNRT 156 (278)
T ss_pred HHHHHHHHhccCCC---CCCCEEEEEcCcHHHHHHHHHHHHc-----CC---------CEEEEEeCC
Confidence 345666664 4666 8899999999998888887777643 74 569999884
No 100
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.20 E-value=2.9 Score=43.96 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=27.0
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
..||.|+|+|..|.++|..+... |. +++++|+.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~-----G~----------~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASAN-----GH----------RVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-----CC----------EEEEEeCC
Confidence 46899999999999999999875 73 46677764
No 101
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=89.20 E-value=0.84 Score=48.39 Aligned_cols=50 Identities=28% Similarity=0.476 Sum_probs=38.4
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 320 GLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 320 gll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
|++.+++-.+.+ .+.+++++|++|||-|+.+|+-.|.+. |. ++|++++|.
T Consensus 110 G~~~~L~~~~~~-~~~~~~~vlilGAGGAarAv~~aL~~~-----g~---------~~i~V~NRt 159 (283)
T COG0169 110 GFLRALKEFGLP-VDVTGKRVLILGAGGAARAVAFALAEA-----GA---------KRITVVNRT 159 (283)
T ss_pred HHHHHHHhcCCC-cccCCCEEEEECCcHHHHHHHHHHHHc-----CC---------CEEEEEeCC
Confidence 455777765533 115689999999999999998888775 84 679999983
No 102
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=89.13 E-value=1.9 Score=42.12 Aligned_cols=84 Identities=14% Similarity=0.253 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCC
Q 040403 314 AGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGS-AGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRE 392 (623)
Q Consensus 314 aaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGs-Ag~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~ 392 (623)
--+|-.|++.-++..+.+ +++.+++++|.+. -|.-+|.||... |. .+.+++++
T Consensus 16 ~PcTp~aii~lL~~~~~~---l~Gk~v~VvGrs~~VG~Pla~lL~~~-----~a----------tVt~~h~~-------- 69 (160)
T PF02882_consen 16 VPCTPLAIIELLEYYGID---LEGKKVVVVGRSNIVGKPLAMLLLNK-----GA----------TVTICHSK-------- 69 (160)
T ss_dssp --HHHHHHHHHHHHTT-S---TTT-EEEEE-TTTTTHHHHHHHHHHT-----T-----------EEEEE-TT--------
T ss_pred cCCCHHHHHHHHHhcCCC---CCCCEEEEECCcCCCChHHHHHHHhC-----CC----------eEEeccCC--------
Confidence 445778888888888988 9999999999984 888888877763 53 35556553
Q ss_pred CCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHH
Q 040403 393 NIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEA 448 (623)
Q Consensus 393 ~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 448 (623)
..+|.+.++ ++|++|-..|+++.++.++|+.
T Consensus 70 -----------------------T~~l~~~~~--~ADIVVsa~G~~~~i~~~~ik~ 100 (160)
T PF02882_consen 70 -----------------------TKNLQEITR--RADIVVSAVGKPNLIKADWIKP 100 (160)
T ss_dssp -----------------------SSSHHHHHT--TSSEEEE-SSSTT-B-GGGS-T
T ss_pred -----------------------CCcccceee--eccEEeeeeccccccccccccC
Confidence 123667777 8999999999999999987763
No 103
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=89.03 E-value=0.099 Score=49.31 Aligned_cols=115 Identities=15% Similarity=0.252 Sum_probs=69.5
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC-CcccCCCCCCChhhHHhHHHhhhhcccccCC
Q 040403 338 QKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK-GLITEDRENIDPDAKPFARKVNEISRQGLWE 415 (623)
Q Consensus 338 ~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~-GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~ 415 (623)
.||.|+|| |..|..+|-+|+.. |+- ++|.|+|.+ ... ......+.+-...+.. ...-
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~-----~l~--------~ei~L~D~~~~~~-------~g~a~Dl~~~~~~~~~-~~~i 59 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ-----GLA--------DEIVLIDINEDKA-------EGEALDLSHASAPLPS-PVRI 59 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT-----TTS--------SEEEEEESSHHHH-------HHHHHHHHHHHHGSTE-EEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhC-----CCC--------CceEEeccCcccc-------eeeehhhhhhhhhccc-cccc
Confidence 38999999 99999999988874 653 459999996 111 1111111110000000 0111
Q ss_pred CCCHHHHHhhcCCcEEEeccCCC---CC-----------CCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcc
Q 040403 416 GASLVEVVQQVKPDVLLGLSAVG---GL-----------FSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSI 479 (623)
Q Consensus 416 ~~~L~e~V~~vkptvLIG~S~~~---g~-----------Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~w 479 (623)
..+..+.++ +.|++|=+.+.+ |- +-+++.+.+ .+++...+++-.|||. ....+-+++.
T Consensus 60 ~~~~~~~~~--~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i-~~~~p~~~vivvtNPv---d~~t~~~~~~ 131 (141)
T PF00056_consen 60 TSGDYEALK--DADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKI-AKYAPDAIVIVVTNPV---DVMTYVAQKY 131 (141)
T ss_dssp EESSGGGGT--TESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHH-HHHSTTSEEEE-SSSH---HHHHHHHHHH
T ss_pred ccccccccc--cccEEEEeccccccccccHHHHHHHhHhHHHHHHHHH-HHhCCccEEEEeCCcH---HHHHHHHHHh
Confidence 235667777 899998555443 22 224667777 7889999999999997 3555555554
No 104
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=89.02 E-value=0.66 Score=42.77 Aligned_cols=37 Identities=22% Similarity=0.428 Sum_probs=31.6
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCc
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGL 386 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GL 386 (623)
+++||+++|+|+-|.-+|..|... |+ ++|.++|.+=+
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~-----Gv---------~~i~lvD~d~v 37 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARS-----GV---------GKITLVDDDIV 37 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHH-----TT---------SEEEEEESSBB
T ss_pred CCCEEEEECcCHHHHHHHHHHHHh-----CC---------CceeecCCcce
Confidence 368999999999999999999987 96 78999999743
No 105
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.95 E-value=4.2 Score=43.25 Aligned_cols=130 Identities=13% Similarity=0.153 Sum_probs=88.6
Q ss_pred HHHHHHHHHhC--Cc---eeeec---ccCCCchHHHHHHHHhccCCccccCcc--------hhHHHHHHHHHHHHHHhCC
Q 040403 267 DEFMEAIFTRW--PN---VIVQF---EDFQSKWAFKLLQRYRYKYRMFNDDVQ--------GTAGVAVAGLLGAVRAQGR 330 (623)
Q Consensus 267 defv~av~~~~--P~---~lIqf---EDf~~~nAf~lL~ryr~~~~~FNDDiQ--------GTaaV~lAgll~A~r~~g~ 330 (623)
+||.+.++++- |+ .++|+ +.+.....++.++-.+| +=.||..-. +-.-+|-+|++.=++-.+.
T Consensus 76 ~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~KD-VDGl~~~n~g~l~~g~~~~~PcTp~av~~lL~~~~i 154 (278)
T PRK14172 76 EDLINEIEELNKDNNVHGIMLQLPLPKHLDEKKITNKIDANKD-IDCLTFISVGKFYKGEKCFLPCTPNSVITLIKSLNI 154 (278)
T ss_pred HHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcccc-cCccCHhhHHHHhCCCCCCcCCCHHHHHHHHHHhCC
Confidence 67888888774 54 37786 44444333333322222 222332222 2356688888888899999
Q ss_pred CCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhc
Q 040403 331 SMIDFPKQKIVVAGAG-SAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEIS 409 (623)
Q Consensus 331 ~~~~l~d~riv~~GAG-sAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~ 409 (623)
+ |++++++|+|-+ ..|.-+|.||... |. .+.+|+|+
T Consensus 155 ~---l~Gk~vvViGrS~~VGkPla~lL~~~-----~A----------tVt~chs~------------------------- 191 (278)
T PRK14172 155 D---IEGKEVVVIGRSNIVGKPVAQLLLNE-----NA----------TVTICHSK------------------------- 191 (278)
T ss_pred C---CCCCEEEEECCCccchHHHHHHHHHC-----CC----------EEEEeCCC-------------------------
Confidence 8 999999999986 5788888888652 53 46667653
Q ss_pred ccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHH
Q 040403 410 RQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEA 448 (623)
Q Consensus 410 ~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 448 (623)
..+|.+.++ ++|++|-..|.++.|++++|+.
T Consensus 192 ------T~~l~~~~~--~ADIvIsAvGkp~~i~~~~ik~ 222 (278)
T PRK14172 192 ------TKNLKEVCK--KADILVVAIGRPKFIDEEYVKE 222 (278)
T ss_pred ------CCCHHHHHh--hCCEEEEcCCCcCccCHHHcCC
Confidence 123677777 7999999999999999998873
No 106
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=88.95 E-value=0.87 Score=49.48 Aligned_cols=108 Identities=13% Similarity=0.204 Sum_probs=63.1
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCC---C------CCCChhhHHhHHHh
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITED---R------ENIDPDAKPFARKV 405 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~---r------~~l~~~~~~fA~~~ 405 (623)
|++.||+|+|+|..|..||..|+.+ |+ ++|.++|.+= +... | .++...|..-+...
T Consensus 133 l~~~~VlvvG~GG~Gs~ia~~La~~-----Gv---------g~i~lvD~d~-v~~sNl~Rq~l~~~~diG~~Ka~~~~~~ 197 (376)
T PRK08762 133 LLEARVLLIGAGGLGSPAALYLAAA-----GV---------GTLGIVDHDV-VDRSNLQRQILHTEDRVGQPKVDSAAQR 197 (376)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHc-----CC---------CeEEEEeCCE-ecchhhccccccchhhCCCcHHHHHHHH
Confidence 7788999999999999999999886 95 7799999862 2111 1 11222232222110
Q ss_pred -hhhccc----ccC---CCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEec
Q 040403 406 -NEISRQ----GLW---EGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAM 462 (623)
Q Consensus 406 -~~~~~~----~~~---~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaL 462 (623)
.+..++ ... ...++.+.++ +.|++|-++...- ++..+..+ +.....|+|++-
T Consensus 198 l~~~np~v~v~~~~~~~~~~~~~~~~~--~~D~Vv~~~d~~~--~r~~ln~~-~~~~~ip~i~~~ 257 (376)
T PRK08762 198 LAALNPDVQVEAVQERVTSDNVEALLQ--DVDVVVDGADNFP--TRYLLNDA-CVKLGKPLVYGA 257 (376)
T ss_pred HHHHCCCCEEEEEeccCChHHHHHHHh--CCCEEEECCCCHH--HHHHHHHH-HHHcCCCEEEEE
Confidence 011110 000 1123455666 6788887764321 45566777 777778888763
No 107
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.80 E-value=2.2 Score=47.29 Aligned_cols=119 Identities=16% Similarity=0.231 Sum_probs=64.9
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLW 414 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~ 414 (623)
+...||+|+|.|-.|+++|++|... |. .+..+|.+- .....+.-..+.. ....- ..
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~~-----G~----------~V~~~D~~~-----~~~~~~~~~~l~~--~gi~~--~~ 67 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKL-----GA----------KVTAFDKKS-----EEELGEVSNELKE--LGVKL--VL 67 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHHC-----CC----------EEEEECCCC-----CccchHHHHHHHh--CCCEE--Ee
Confidence 5668999999999999999998764 73 477788641 1111111011111 01000 00
Q ss_pred CCCCHHHHHhhcCCcEEEeccCCCCC-CCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCC
Q 040403 415 EGASLVEVVQQVKPDVLLGLSAVGGL-FSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGSPFK 493 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLIG~S~~~g~-Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~Grai~AtGsPF~ 493 (623)
. ....+-++ ++|.+| +| ||+ .+.+.+++. +...-||+ | |+ |-++++.+.+.|-.|||
T Consensus 68 ~-~~~~~~~~--~~dlVV-~S--pgi~~~~p~~~~a--~~~~i~i~---s------~~--e~~~~~~~~~vIaITGT--- 125 (458)
T PRK01710 68 G-ENYLDKLD--GFDVIF-KT--PSMRIDSPELVKA--KEEGAYIT---S------EM--EEFIKYCPAKVFGVTGS--- 125 (458)
T ss_pred C-CCChHHhc--cCCEEE-EC--CCCCCCchHHHHH--HHcCCcEE---e------ch--HHhhhhcCCCEEEEECC---
Confidence 1 11234444 678666 55 333 454444443 12446775 2 22 23445445678999999
Q ss_pred ccccCCCeecc
Q 040403 494 DVDLGNGHIGH 504 (623)
Q Consensus 494 pv~~~~G~~~~ 504 (623)
+|||-.
T Consensus 126 -----nGKTTT 131 (458)
T PRK01710 126 -----DGKTTT 131 (458)
T ss_pred -----CCHHHH
Confidence 898753
No 108
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=88.62 E-value=1.4 Score=41.94 Aligned_cols=89 Identities=20% Similarity=0.317 Sum_probs=49.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhH--HhHHHhhhhcccccCCC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAK--PFARKVNEISRQGLWEG 416 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~--~fA~~~~~~~~~~~~~~ 416 (623)
||.|+|||+.|+.+|..+... | .++.|.+++.-..+ .+...+. .|.. ..... .+..-.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-----g----------~~V~l~~~~~~~~~---~i~~~~~n~~~~~-~~~l~-~~i~~t 60 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-----G----------HEVTLWGRDEEQIE---EINETRQNPKYLP-GIKLP-ENIKAT 60 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-----T----------EEEEEETSCHHHHH---HHHHHTSETTTST-TSBEE-TTEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHc-----C----------CEEEEEeccHHHHH---HHHHhCCCCCCCC-CcccC-cccccc
Confidence 689999999999999988874 6 45667766531110 0100000 0000 00000 001124
Q ss_pred CCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccC
Q 040403 417 ASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGS 452 (623)
Q Consensus 417 ~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~ 452 (623)
.+|.++++ ++|++| +. .|--+-+++++.+ ..
T Consensus 61 ~dl~~a~~--~ad~Ii-ia-vPs~~~~~~~~~l-~~ 91 (157)
T PF01210_consen 61 TDLEEALE--DADIII-IA-VPSQAHREVLEQL-AP 91 (157)
T ss_dssp SSHHHHHT--T-SEEE-E--S-GGGHHHHHHHH-TT
T ss_pred cCHHHHhC--cccEEE-ec-ccHHHHHHHHHHH-hh
Confidence 67999998 788776 33 3445668999999 44
No 109
>PRK08374 homoserine dehydrogenase; Provisional
Probab=88.49 E-value=3.1 Score=44.84 Aligned_cols=111 Identities=17% Similarity=0.200 Sum_probs=65.7
Q ss_pred ceEEEeCcchHHHHHHHHHHH---HHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhh-HHhHHHhhhhccccc
Q 040403 338 QKIVVAGAGSAGLGVLNAARK---TMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDA-KPFARKVNEISRQGL 413 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~---~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~-~~fA~~~~~~~~~~~ 413 (623)
.+|.++|.|..|.+++++|.+ .+.++.|+.. +=+-+.|++|-+...+. ++..+ ..+.+.......|..
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l-------~VvaV~ds~~~~~~~~G-id~~~l~~~~~~~~~~~~~~~ 74 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVEL-------KVVSITDTSGTIWLPED-IDLREAKEVKENFGKLSNWGN 74 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCE-------EEEEEEeCCccccCCCC-CChHHHHHhhhccCchhhccc
Confidence 589999999999999999987 3444446432 23456799998876543 33211 122221111111110
Q ss_pred --C-CCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEE
Q 040403 414 --W-EGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIF 460 (623)
Q Consensus 414 --~-~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIF 460 (623)
. ...++.|.++...+||+|-+++. .. ..++++.. -....++|.
T Consensus 75 ~~~~~~~~~~ell~~~~~DVvVd~t~~-~~-a~~~~~~a--l~~G~~VVt 120 (336)
T PRK08374 75 DYEVYNFSPEEIVEEIDADIVVDVTND-KN-AHEWHLEA--LKEGKSVVT 120 (336)
T ss_pred cccccCCCHHHHHhcCCCCEEEECCCc-HH-HHHHHHHH--HhhCCcEEE
Confidence 0 12378899987899999999853 33 34444433 235677775
No 110
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=88.37 E-value=2.6 Score=43.59 Aligned_cols=138 Identities=16% Similarity=0.220 Sum_probs=90.0
Q ss_pred cCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcc
Q 040403 308 DDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLI 387 (623)
Q Consensus 308 DDiQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi 387 (623)
|--+-||-=+..++-.+++..+.. ++++.||+|-|.|..|...|+.|.+. |. +=+-+.|++|.|
T Consensus 5 ~~~~aTg~GV~~~~~~~~~~~~~~--~l~g~~v~IqGfG~VG~~~a~~l~~~-----Ga---------~vv~vsD~~G~i 68 (244)
T PF00208_consen 5 GRSEATGYGVAYAIEAALEHLGGD--SLEGKRVAIQGFGNVGSHAARFLAEL-----GA---------KVVAVSDSSGAI 68 (244)
T ss_dssp TTTTHHHHHHHHHHHHHHHHTTCH--SSTTCEEEEEESSHHHHHHHHHHHHT-----TE---------EEEEEEESSEEE
T ss_pred CCCcchHHHHHHHHHHHHHHcCCC--CcCCCEEEEECCCHHHHHHHHHHHHc-----CC---------EEEEEecCceEE
Confidence 334568888888889999986655 29999999999999999999999885 73 336677999998
Q ss_pred cCCCCCCChh--hHHhHHHhhhhccccc--C-CCCCHHH--HHhhcCCcEEEeccCCCCCCCHHHHH-HcccCCCCCCEE
Q 040403 388 TEDRENIDPD--AKPFARKVNEISRQGL--W-EGASLVE--VVQQVKPDVLLGLSAVGGLFSKEVLE-AMRGSTSTRPAI 459 (623)
Q Consensus 388 ~~~r~~l~~~--~~~fA~~~~~~~~~~~--~-~~~~L~e--~V~~vkptvLIG~S~~~g~Ft~evv~-~M~a~~~erPII 459 (623)
++.. .|+.. .....+....+..... + ...-+.+ .+-.++.||||=+ +.++.+|++.+. .++ +.-+||
T Consensus 69 ~~~~-Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~-A~~~~I~~~~~~~~i~---~~akiI 143 (244)
T PF00208_consen 69 YDPD-GLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPC-ALGNVINEDNAPSLIK---SGAKII 143 (244)
T ss_dssp EETT-EEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEE-SSSTSBSCHHHCHCHH---TT-SEE
T ss_pred EcCC-CchHHHHHHHHHHhCCcccccccccccceeEeccccccccccccEEEEc-CCCCeeCHHHHHHHHh---ccCcEE
Confidence 8633 23211 1111110000111000 0 0001111 4455799999988 478999999999 662 347899
Q ss_pred EecCC-CC
Q 040403 460 FAMSN-PT 466 (623)
Q Consensus 460 FaLSN-Pt 466 (623)
.--+| |+
T Consensus 144 vegAN~p~ 151 (244)
T PF00208_consen 144 VEGANGPL 151 (244)
T ss_dssp EESSSSSB
T ss_pred EeCcchhc
Confidence 99999 55
No 111
>PLN02602 lactate dehydrogenase
Probab=88.30 E-value=0.68 Score=50.32 Aligned_cols=126 Identities=17% Similarity=0.298 Sum_probs=78.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCC-CCCCChhhHHhHHHhhhhcccccCCC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITED-RENIDPDAKPFARKVNEISRQGLWEG 416 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~-r~~l~~~~~~fA~~~~~~~~~~~~~~ 416 (623)
.||.|+|||..|..+|-.|+.. |+ ...|.|+|.+-=...+ .-||.+.. +|-.. .. ....
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~-----~l--------~~el~LiDi~~~~~~g~a~DL~~~~-~~~~~-~~-----i~~~ 97 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQ-----DL--------ADELALVDVNPDKLRGEMLDLQHAA-AFLPR-TK-----ILAS 97 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC--------CCEEEEEeCCCchhhHHHHHHHhhh-hcCCC-CE-----EEeC
Confidence 4999999999999999987752 66 3579999983100000 01222211 11110 01 1112
Q ss_pred CCHHHHHhhcCCcEEEeccCCC---CCCCH------------HHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccC
Q 040403 417 ASLVEVVQQVKPDVLLGLSAVG---GLFSK------------EVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVG 481 (623)
Q Consensus 417 ~~L~e~V~~vkptvLIG~S~~~---g~Ft~------------evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~ 481 (623)
.+.++ ++ +.|++|=+.+.+ | -|+ ++++.| .+++..-+|+-.|||. .....-+++++.
T Consensus 98 ~dy~~-~~--daDiVVitAG~~~k~g-~tR~dll~~N~~I~~~i~~~I-~~~~p~~ivivvtNPv---dv~t~~~~k~sg 169 (350)
T PLN02602 98 TDYAV-TA--GSDLCIVTAGARQIPG-ESRLNLLQRNVALFRKIIPEL-AKYSPDTILLIVSNPV---DVLTYVAWKLSG 169 (350)
T ss_pred CCHHH-hC--CCCEEEECCCCCCCcC-CCHHHHHHHHHHHHHHHHHHH-HHHCCCeEEEEecCch---HHHHHHHHHHhC
Confidence 34444 66 899998555543 3 343 677888 7899999999999998 666667777762
Q ss_pred --CcEEEecCCC
Q 040403 482 --DNIIFASGSP 491 (623)
Q Consensus 482 --Grai~AtGsP 491 (623)
=+-+|++|.-
T Consensus 170 ~p~~rviG~gt~ 181 (350)
T PLN02602 170 FPANRVIGSGTN 181 (350)
T ss_pred CCHHHEEeecch
Confidence 1446677643
No 112
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.27 E-value=1.9 Score=45.96 Aligned_cols=130 Identities=18% Similarity=0.199 Sum_probs=86.3
Q ss_pred HHHHHHHHHhC--Cc---eeeecccCCCchHHHHHHHHhc--cCCccccCc--------chhHHHHHHHHHHHHHHhCCC
Q 040403 267 DEFMEAIFTRW--PN---VIVQFEDFQSKWAFKLLQRYRY--KYRMFNDDV--------QGTAGVAVAGLLGAVRAQGRS 331 (623)
Q Consensus 267 defv~av~~~~--P~---~lIqfEDf~~~nAf~lL~ryr~--~~~~FNDDi--------QGTaaV~lAgll~A~r~~g~~ 331 (623)
+||.+.++++- |+ .++|+==...-+..++++...- .+=.||..- .+-.-+|-+|++.=++-.|.+
T Consensus 76 ~~l~~~I~~lN~d~~V~GIivqlPlp~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~avi~lL~~~~i~ 155 (284)
T PRK14179 76 EELLDLIERYNQDPTWHGILVQLPLPKHINEEKILLAIDPKKDVDGFHPMNTGHLWSGRPVMIPCTPAGIMEMFREYNVE 155 (284)
T ss_pred HHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCccccccccCHhhHHHHhCCCCCCcCCCHHHHHHHHHHhCCC
Confidence 67777777774 54 3677432223333444433221 122222211 223456778888888889999
Q ss_pred CCCCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcc
Q 040403 332 MIDFPKQKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISR 410 (623)
Q Consensus 332 ~~~l~d~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~ 410 (623)
++..+++|+|. |..|.-+|.+|... |.+ +.++.++
T Consensus 156 ---l~Gk~v~vIG~S~ivG~Pla~lL~~~-----gat----------Vtv~~s~-------------------------- 191 (284)
T PRK14179 156 ---LEGKHAVVIGRSNIVGKPMAQLLLDK-----NAT----------VTLTHSR-------------------------- 191 (284)
T ss_pred ---CCCCEEEEECCCCcCcHHHHHHHHHC-----CCE----------EEEECCC--------------------------
Confidence 99999999999 99999999999874 743 3333221
Q ss_pred cccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHH
Q 040403 411 QGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLE 447 (623)
Q Consensus 411 ~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 447 (623)
..+|.+.++ ++|++|-+-+.++.+++++++
T Consensus 192 -----t~~l~~~~~--~ADIVI~avg~~~~v~~~~ik 221 (284)
T PRK14179 192 -----TRNLAEVAR--KADILVVAIGRGHFVTKEFVK 221 (284)
T ss_pred -----CCCHHHHHh--hCCEEEEecCccccCCHHHcc
Confidence 124777888 899999999999999997743
No 113
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.16 E-value=2.1 Score=45.60 Aligned_cols=83 Identities=13% Similarity=0.211 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCC
Q 040403 315 GVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAG-SAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDREN 393 (623)
Q Consensus 315 aV~lAgll~A~r~~g~~~~~l~d~riv~~GAG-sAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~ 393 (623)
-+|-.|++.=++-.+.+ ++.+++||+|.+ ..|.-+|.||... |. .+.+|+|+
T Consensus 140 PcTp~avi~ll~~y~i~---l~Gk~vvViGrS~iVGkPla~lL~~~-----~a----------tVt~chs~--------- 192 (284)
T PRK14177 140 PCTPYGMVLLLKEYGID---VTGKNAVVVGRSPILGKPMAMLLTEM-----NA----------TVTLCHSK--------- 192 (284)
T ss_pred CCCHHHHHHHHHHhCCC---CCCCEEEEECCCCcchHHHHHHHHHC-----CC----------EEEEeCCC---------
Confidence 44667777778888888 999999999985 5788888888652 53 46667653
Q ss_pred CChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHH
Q 040403 394 IDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEA 448 (623)
Q Consensus 394 l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 448 (623)
..+|.+.++ ++|++|.+.|.++.++.++|+.
T Consensus 193 ----------------------T~~l~~~~~--~ADIvIsAvGk~~~i~~~~ik~ 223 (284)
T PRK14177 193 ----------------------TQNLPSIVR--QADIIVGAVGKPEFIKADWISE 223 (284)
T ss_pred ----------------------CCCHHHHHh--hCCEEEEeCCCcCccCHHHcCC
Confidence 123667777 8999999999999999988873
No 114
>PRK15076 alpha-galactosidase; Provisional
Probab=88.15 E-value=0.56 Score=52.25 Aligned_cols=133 Identities=17% Similarity=0.179 Sum_probs=76.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhh-h-cccccCC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNE-I-SRQGLWE 415 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~-~-~~~~~~~ 415 (623)
.||.|+|||+.| .+..++..+....++. -..++|+|.+- +| +...+. +++.... . ..+.-..
T Consensus 2 ~KIaIIGaGsvg--~~~~~~~~i~~~~~l~-------~~evvLvDid~----er--~~~~~~-l~~~~~~~~~~~~~i~~ 65 (431)
T PRK15076 2 PKITFIGAGSTV--FTKNLLGDILSVPALR-------DAEIALMDIDP----ER--LEESEI-VARKLAESLGASAKITA 65 (431)
T ss_pred cEEEEECCCHHH--hHHHHHHHHhhCccCC-------CCEEEEECCCH----HH--HHHHHH-HHHHHHHhcCCCeEEEE
Confidence 589999999985 3333433333111332 25799999742 11 110111 1111100 0 0111123
Q ss_pred CCCHHHHHhhcCCcEEEeccCCCCC-------------------------------------CCHHHHHHcccCCCCCCE
Q 040403 416 GASLVEVVQQVKPDVLLGLSAVGGL-------------------------------------FSKEVLEAMRGSTSTRPA 458 (623)
Q Consensus 416 ~~~L~e~V~~vkptvLIG~S~~~g~-------------------------------------Ft~evv~~M~a~~~erPI 458 (623)
..++.++++ ++|++|=..+++|. .-.++++.| .++|+.-+
T Consensus 66 ttD~~eal~--dADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i-~~~~p~a~ 142 (431)
T PRK15076 66 TTDRREALQ--GADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDM-EEVCPDAL 142 (431)
T ss_pred ECCHHHHhC--CCCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHH-HHHCCCeE
Confidence 567889988 78888755444421 114778888 88999999
Q ss_pred EEecCCCCCCCCCCHHHHhcccCCcEEEecC-CCCC
Q 040403 459 IFAMSNPTNNAECTPEEAFSIVGDNIIFASG-SPFK 493 (623)
Q Consensus 459 IFaLSNPt~~~E~tpeda~~wT~Grai~AtG-sPF~ 493 (623)
|+-.|||. .+..+-++.++ ..-+|.+| +|+.
T Consensus 143 iin~tNP~---divt~~~~~~~-~~rviG~c~~~~~ 174 (431)
T PRK15076 143 LLNYVNPM---AMNTWAMNRYP-GIKTVGLCHSVQG 174 (431)
T ss_pred EEEcCChH---HHHHHHHhcCC-CCCEEEECCCHHH
Confidence 99999998 34444455664 34578887 6644
No 115
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.14 E-value=0.79 Score=48.93 Aligned_cols=127 Identities=15% Similarity=0.258 Sum_probs=77.4
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCC-CCCCChhhHHhHHHhhhhcccccCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITED-RENIDPDAKPFARKVNEISRQGLWE 415 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~-r~~l~~~~~~fA~~~~~~~~~~~~~ 415 (623)
-.||.|+|||..|..+|-.|+.. |+ ...|.|+|.+-=...+ .-||.+.. +|... .. ...
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~-----~~--------~~el~LiD~~~~~~~g~a~Dl~~~~-~~~~~-~~-----v~~ 62 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAK-----GL--------ADELVLVDVVEDKLKGEAMDLQHGS-AFLKN-PK-----IEA 62 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc-----CC--------CCEEEEEeCCccHHHHHHHHHHHhh-ccCCC-CE-----EEE
Confidence 35999999999999998877653 65 3579999984100000 01122111 11100 00 111
Q ss_pred CCCHHHHHhhcCCcEEEeccCC---CCCCCH------------HHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhccc
Q 040403 416 GASLVEVVQQVKPDVLLGLSAV---GGLFSK------------EVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIV 480 (623)
Q Consensus 416 ~~~L~e~V~~vkptvLIG~S~~---~g~Ft~------------evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT 480 (623)
.++.++ ++ +.|++|=+.+. +| .|+ ++++.+ .+++..-+|+-.|||. .....-+++++
T Consensus 63 ~~dy~~-~~--~adivvitaG~~~k~g-~~R~dll~~N~~i~~~~~~~i-~~~~p~~~vivvsNP~---d~~t~~~~k~s 134 (312)
T cd05293 63 DKDYSV-TA--NSKVVIVTAGARQNEG-ESRLDLVQRNVDIFKGIIPKL-VKYSPNAILLVVSNPV---DIMTYVAWKLS 134 (312)
T ss_pred CCCHHH-hC--CCCEEEECCCCCCCCC-CCHHHHHHHHHHHHHHHHHHH-HHhCCCcEEEEccChH---HHHHHHHHHHh
Confidence 245554 66 89998754443 33 343 677788 8899999999999998 46666666663
Q ss_pred --CCcEEEecCCC
Q 040403 481 --GDNIIFASGSP 491 (623)
Q Consensus 481 --~Grai~AtGsP 491 (623)
.-+-+|++|.-
T Consensus 135 g~p~~~viG~gt~ 147 (312)
T cd05293 135 GLPKHRVIGSGCN 147 (312)
T ss_pred CCCHHHEEecCch
Confidence 12347777654
No 116
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=87.54 E-value=16 Score=38.89 Aligned_cols=162 Identities=16% Similarity=0.207 Sum_probs=102.2
Q ss_pred hCCce-eeecccCCCchHHHHHHHHhccCCccccCc---chhHHHHHHHHHHHHHHh---------C----C--------
Q 040403 276 RWPNV-IVQFEDFQSKWAFKLLQRYRYKYRMFNDDV---QGTAGVAVAGLLGAVRAQ---------G----R-------- 330 (623)
Q Consensus 276 ~~P~~-lIqfEDf~~~nAf~lL~ryr~~~~~FNDDi---QGTaaV~lAgll~A~r~~---------g----~-------- 330 (623)
..|+. +|+.-=.+..| ..+-.--+..+.+.|--- ..+|=-+++-+|+..|-. | .
T Consensus 60 ~~~~Lk~I~~~~~G~d~-id~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~ 138 (311)
T PRK08410 60 QLPNLKLICITATGTNN-VDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISR 138 (311)
T ss_pred hCCCCeEEEEccccccc-ccHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCc
Confidence 45664 66655555544 333333344577777422 345666888888887743 1 0
Q ss_pred CCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcc
Q 040403 331 SMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISR 410 (623)
Q Consensus 331 ~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~ 410 (623)
+...|.++++.|+|-|..|--+|+++... |+ +|+.+|+.+- ... ..
T Consensus 139 ~~~~L~gktvGIiG~G~IG~~vA~~~~~f-----gm----------~V~~~d~~~~---~~~-------------~~--- 184 (311)
T PRK08410 139 PLGEIKGKKWGIIGLGTIGKRVAKIAQAF-----GA----------KVVYYSTSGK---NKN-------------EE--- 184 (311)
T ss_pred cccccCCCEEEEECCCHHHHHHHHHHhhc-----CC----------EEEEECCCcc---ccc-------------cC---
Confidence 01248999999999999999999988654 75 5778888421 000 00
Q ss_pred cccCCCCCHHHHHhhcCCcEEEec----cCCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcc--cCCcE
Q 040403 411 QGLWEGASLVEVVQQVKPDVLLGL----SAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSI--VGDNI 484 (623)
Q Consensus 411 ~~~~~~~~L~e~V~~vkptvLIG~----S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~w--T~Gra 484 (623)
-...+|.|+++ +.|+++=. ...-|.|+++.++.| .+..++.=.|. .++-=|+|+.. .+|+.
T Consensus 185 ---~~~~~l~ell~--~sDvv~lh~Plt~~T~~li~~~~~~~M----k~~a~lIN~aR----G~vVDe~AL~~AL~~g~i 251 (311)
T PRK08410 185 ---YERVSLEELLK--TSDIISIHAPLNEKTKNLIAYKELKLL----KDGAILINVGR----GGIVNEKDLAKALDEKDI 251 (311)
T ss_pred ---ceeecHHHHhh--cCCEEEEeCCCCchhhcccCHHHHHhC----CCCeEEEECCC----ccccCHHHHHHHHHcCCe
Confidence 11346999998 78988732 223489999999999 67777776655 45544444321 34665
Q ss_pred E
Q 040403 485 I 485 (623)
Q Consensus 485 i 485 (623)
-
T Consensus 252 ~ 252 (311)
T PRK08410 252 Y 252 (311)
T ss_pred E
Confidence 4
No 117
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.46 E-value=2.4 Score=44.74 Aligned_cols=96 Identities=16% Similarity=0.124 Sum_probs=53.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhc---cc--c
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEIS---RQ--G 412 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~---~~--~ 412 (623)
.||.|+|+|+.|.++|..|... |. ++.++|+.. +....+......+. +. .
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~-----G~----------~V~~~~r~~----------~~~~~i~~~~~~~~~~~g~~~~ 59 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK-----GV----------PVRLWARRP----------EFAAALAAERENREYLPGVALP 59 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-----CC----------eEEEEeCCH----------HHHHHHHHhCcccccCCCCcCC
Confidence 4899999999999999999874 63 466777631 01111111000000 00 0
Q ss_pred --cCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCC
Q 040403 413 --LWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPT 466 (623)
Q Consensus 413 --~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt 466 (623)
.....++.|+++ ..|++|=+- +....+++++.+ .+.-+|+-++|..
T Consensus 60 ~~~~~~~~~~e~~~--~aD~Vi~~v--~~~~~~~v~~~l----~~~~~vi~~~~Gi 107 (328)
T PRK14618 60 AELYPTADPEEALA--GADFAVVAV--PSKALRETLAGL----PRALGYVSCAKGL 107 (328)
T ss_pred CCeEEeCCHHHHHc--CCCEEEEEC--chHHHHHHHHhc----CcCCEEEEEeecc
Confidence 012346778776 567666332 222458888777 3334667778853
No 118
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.45 E-value=4.5 Score=43.16 Aligned_cols=134 Identities=16% Similarity=0.180 Sum_probs=87.7
Q ss_pred HHHHHHHHHhC--Cc---eeeecccCCCchHHHHHHHHh--ccCCccccCc--------chhHHHHHHHHHHHHHHhCCC
Q 040403 267 DEFMEAIFTRW--PN---VIVQFEDFQSKWAFKLLQRYR--YKYRMFNDDV--------QGTAGVAVAGLLGAVRAQGRS 331 (623)
Q Consensus 267 defv~av~~~~--P~---~lIqfEDf~~~nAf~lL~ryr--~~~~~FNDDi--------QGTaaV~lAgll~A~r~~g~~ 331 (623)
+||.+.+++.- |+ .++|+==...-+..++++.-. +.+=.||.-- .+-.-+|-+|++.=++-.+.+
T Consensus 75 ~~l~~~I~~lN~d~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~av~~lL~~~~i~ 154 (286)
T PRK14184 75 EELEDLIAELNARPDIDGILLQLPLPKGLDSQRCLELIDPAKDVDGFHPENMGRLALGLPGFRPCTPAGVMTLLERYGLS 154 (286)
T ss_pred HHHHHHHHHHhCCCcCceEEEecCCCCCCCHHHHHhccCcccCcccCCHhhHHHHhCCCCCCCCCCHHHHHHHHHHhCCC
Confidence 67888888775 54 377764233334444444322 1222222221 233566778889999999999
Q ss_pred CCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcc
Q 040403 332 MIDFPKQKIVVAGAG-SAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISR 410 (623)
Q Consensus 332 ~~~l~d~riv~~GAG-sAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~ 410 (623)
++.+++||+|.+ ..|.-+|.||... |-- + ...+..++++
T Consensus 155 ---l~Gk~vvViGrS~iVG~Pla~lL~~~-----~~~----~--~AtVt~~hs~-------------------------- 194 (286)
T PRK14184 155 ---PAGKKAVVVGRSNIVGKPLALMLGAP-----GKF----A--NATVTVCHSR-------------------------- 194 (286)
T ss_pred ---CCCCEEEEECCCccchHHHHHHHhCC-----ccc----C--CCEEEEEeCC--------------------------
Confidence 999999999986 5688888877641 210 0 1346666653
Q ss_pred cccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHH
Q 040403 411 QGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLE 447 (623)
Q Consensus 411 ~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 447 (623)
..+|.+.++ ++|++|++.+.|+.|++++|+
T Consensus 195 -----t~~l~~~~~--~ADIVI~AvG~p~li~~~~vk 224 (286)
T PRK14184 195 -----TPDLAEECR--EADFLFVAIGRPRFVTADMVK 224 (286)
T ss_pred -----chhHHHHHH--hCCEEEEecCCCCcCCHHHcC
Confidence 123777888 899999999999999998884
No 119
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=87.31 E-value=5.2 Score=42.25 Aligned_cols=106 Identities=21% Similarity=0.299 Sum_probs=64.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcC-CCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLG-NNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEG 416 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~G-ls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~ 416 (623)
.+|.|+|+|..|-.|+.-|+.. | ++. .+|+++|+. ++..+.++. ++. ....
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~-----g~~~~-------~~I~v~~~~----------~e~~~~l~~---~~g---~~~~ 53 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKS-----GALPP-------EEIIVTNRS----------EEKRAALAA---EYG---VVTT 53 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhc-----CCCCc-------ceEEEeCCC----------HHHHHHHHH---HcC---Cccc
Confidence 5899999999999888887775 7 443 789888873 111222332 211 1124
Q ss_pred CCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccC
Q 040403 417 ASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVG 481 (623)
Q Consensus 417 ~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~ 481 (623)
.+..++++ +.|+++ ++-.|-.| +++++.+|. ..+..+|..+.=.+ +-++.-+|.+
T Consensus 54 ~~~~~~~~--~advv~-LavKPq~~-~~vl~~l~~-~~~~~lvISiaAGv-----~~~~l~~~l~ 108 (266)
T COG0345 54 TDNQEAVE--EADVVF-LAVKPQDL-EEVLSKLKP-LTKDKLVISIAAGV-----SIETLERLLG 108 (266)
T ss_pred CcHHHHHh--hCCEEE-EEeChHhH-HHHHHHhhc-ccCCCEEEEEeCCC-----CHHHHHHHcC
Confidence 55667777 677766 44344443 567777733 55666666665433 4556666643
No 120
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=87.25 E-value=2.1 Score=44.86 Aligned_cols=124 Identities=16% Similarity=0.195 Sum_probs=73.0
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhh-cccccCCCCC
Q 040403 340 IVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEI-SRQGLWEGAS 418 (623)
Q Consensus 340 iv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~-~~~~~~~~~~ 418 (623)
|.|+|||..|.++|..+... |+ . .++++|.+ .++ +......+.+..... ....-....+
T Consensus 1 I~IIGaG~vG~~ia~~la~~-----~l--------~-eV~L~Di~----e~~--~~g~~~dl~~~~~~~~~~~~I~~t~d 60 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK-----EL--------G-DVVLLDIV----EGL--PQGKALDISQAAPILGSDTKVTGTND 60 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC-----CC--------c-EEEEEeCC----CcH--HHHHHHHHHHhhhhcCCCeEEEEcCC
Confidence 57999999999999877653 54 1 69999986 111 111111111100000 0000112245
Q ss_pred HHHHHhhcCCcEEEeccCCC---CC-----------CCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccCCc-
Q 040403 419 LVEVVQQVKPDVLLGLSAVG---GL-----------FSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDN- 483 (623)
Q Consensus 419 L~e~V~~vkptvLIG~S~~~---g~-----------Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~Gr- 483 (623)
. ++++ ..|++|=+.+.| |- +-+++++.| .+++...+|+-.|||. ......+++++ |.
T Consensus 61 ~-~~l~--dADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i-~~~~p~~~iIv~sNP~---di~t~~~~~~s-~~~ 132 (300)
T cd01339 61 Y-EDIA--GSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENI-KKYAPNAIVIVVTNPL---DVMTYVAYKAS-GFP 132 (300)
T ss_pred H-HHhC--CCCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHH-HHHCCCeEEEEecCcH---HHHHHHHHHHh-CCC
Confidence 4 4566 889988433322 21 234788888 8889999999999998 55555666665 32
Q ss_pred --EEEecCCC
Q 040403 484 --IIFASGSP 491 (623)
Q Consensus 484 --ai~AtGsP 491 (623)
-+|++|+-
T Consensus 133 ~~rviGlgt~ 142 (300)
T cd01339 133 RNRVIGMAGV 142 (300)
T ss_pred HHHEEEecch
Confidence 47788743
No 121
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.25 E-value=6.4 Score=41.99 Aligned_cols=130 Identities=13% Similarity=0.204 Sum_probs=87.8
Q ss_pred HHHHHHHHHhC--Cc---eeeecccCCCchHHHHHHH---HhccCCccccC--------cchhHHHHHHHHHHHHHHhCC
Q 040403 267 DEFMEAIFTRW--PN---VIVQFEDFQSKWAFKLLQR---YRYKYRMFNDD--------VQGTAGVAVAGLLGAVRAQGR 330 (623)
Q Consensus 267 defv~av~~~~--P~---~lIqfEDf~~~nAf~lL~r---yr~~~~~FNDD--------iQGTaaV~lAgll~A~r~~g~ 330 (623)
+||++.+.++- |+ .++|+==...-+..++++. .+| +=+||.. -.+-.-+|-+|++.=++-.|.
T Consensus 75 ~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~KD-VDGl~p~N~g~l~~~~~~~~PcTp~avi~lL~~~~i 153 (284)
T PRK14170 75 EKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYDKD-VDGFHPVNVGNLFIGKDSFVPCTPAGIIELIKSTGT 153 (284)
T ss_pred HHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcccC-cccCChhhhhHHhCCCCCCCCCCHHHHHHHHHHhCC
Confidence 57778888775 54 4777653333344444444 332 2222211 123456677888888899999
Q ss_pred CCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhc
Q 040403 331 SMIDFPKQKIVVAGAG-SAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEIS 409 (623)
Q Consensus 331 ~~~~l~d~riv~~GAG-sAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~ 409 (623)
+ |+.+++||+|.+ ..|.-+|.||... |. .+.+|+|+
T Consensus 154 ~---l~Gk~vvVvGrS~iVGkPla~lL~~~-----~a----------tVtichs~------------------------- 190 (284)
T PRK14170 154 Q---IEGKRAVVIGRSNIVGKPVAQLLLNE-----NA----------TVTIAHSR------------------------- 190 (284)
T ss_pred C---CCCCEEEEECCCCcchHHHHHHHHHC-----CC----------EEEEeCCC-------------------------
Confidence 8 999999999986 5688888877642 53 45566553
Q ss_pred ccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHH
Q 040403 410 RQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEA 448 (623)
Q Consensus 410 ~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 448 (623)
..+|.+.++ ++|++|-..|.++.|+.++|+.
T Consensus 191 ------T~~l~~~~~--~ADIvI~AvG~~~~i~~~~vk~ 221 (284)
T PRK14170 191 ------TKDLPQVAK--EADILVVATGLAKFVKKDYIKP 221 (284)
T ss_pred ------CCCHHHHHh--hCCEEEEecCCcCccCHHHcCC
Confidence 123677777 8999999999999999988873
No 122
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.18 E-value=2.9 Score=45.81 Aligned_cols=35 Identities=31% Similarity=0.571 Sum_probs=30.0
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+++.+++|+|+|.+|.++|+.|... | .+++++|++
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~-----G----------~~V~~~d~~ 37 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKL-----G----------AKVILTDEK 37 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC-----C----------CEEEEEeCC
Confidence 7788999999999999999888874 7 468888885
No 123
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.17 E-value=19 Score=37.28 Aligned_cols=32 Identities=38% Similarity=0.521 Sum_probs=26.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
++|.|+|+|..|.+||..+... |. +++++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~-----g~----------~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA-----GY----------DVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC-----CC----------ceEEEeCC
Confidence 4899999999999999988664 63 57788863
No 124
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=87.07 E-value=0.93 Score=48.09 Aligned_cols=124 Identities=17% Similarity=0.215 Sum_probs=75.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhh-HHhHHHhh--hhcccccC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDA-KPFARKVN--EISRQGLW 414 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~-~~fA~~~~--~~~~~~~~ 414 (623)
.||.|+|+|..|.++|..++.. |+ -+++++|..-- +...+ ..+.+... .... ...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~-----g~---------~~VvlvDi~~~-------l~~g~a~d~~~~~~~~~~~~-~i~ 59 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK-----EL---------ADLVLLDVVEG-------IPQGKALDMYEASPVGGFDT-KVT 59 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc-----CC---------CeEEEEeCCCC-------hhHHHHHhhhhhhhccCCCc-EEE
Confidence 4899999999999999988763 64 14999998311 22211 11211110 0000 011
Q ss_pred CCCCHHHHHhhcCCcEEEeccCCC---C-C------CC----HHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhccc
Q 040403 415 EGASLVEVVQQVKPDVLLGLSAVG---G-L------FS----KEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIV 480 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLIG~S~~~---g-~------Ft----~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT 480 (623)
...++.+ ++ ..|++|=+.+.| | . ++ +++++.| .+++...+|+-.|||. .+...-+++++
T Consensus 60 ~t~d~~~-~~--~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I-~~~~p~~~iIv~tNP~---di~t~~~~~~s 132 (305)
T TIGR01763 60 GTNNYAD-TA--NSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRI-MEHSPNPIIVVVSNPL---DAMTYVAWQKS 132 (305)
T ss_pred ecCCHHH-hC--CCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHH-HHHCCCeEEEEecCcH---HHHHHHHHHHH
Confidence 2356766 55 788887544432 2 1 22 4566667 7788999999999998 67777777774
Q ss_pred C--CcEEEecCC
Q 040403 481 G--DNIIFASGS 490 (623)
Q Consensus 481 ~--Grai~AtGs 490 (623)
+ -+-+|++|.
T Consensus 133 g~~~~rviG~g~ 144 (305)
T TIGR01763 133 GFPKERVIGQAG 144 (305)
T ss_pred CcCHHHEEEecc
Confidence 2 234777774
No 125
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.06 E-value=2.7 Score=45.04 Aligned_cols=90 Identities=19% Similarity=0.273 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCC
Q 040403 312 GTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAG-SAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITED 390 (623)
Q Consensus 312 GTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAG-sAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~ 390 (623)
+-.-+|-.|++.=++-.|.+ +++++++|+|.+ ..|.-+|.||... |+.. ...+.+|.|+
T Consensus 139 ~~~PcTp~avi~lL~~~~i~---l~Gk~vvViGrS~iVGkPla~lL~~~-----~~~~------~atVtv~hs~------ 198 (297)
T PRK14168 139 KFLPCTPAGIQEMLVRSGVE---TSGAEVVVVGRSNIVGKPIANMMTQK-----GPGA------NATVTIVHTR------ 198 (297)
T ss_pred CCcCCCHHHHHHHHHHhCCC---CCCCEEEEECCCCcccHHHHHHHHhc-----ccCC------CCEEEEecCC------
Confidence 44566778888888889999 999999999985 5788888777652 4321 2345565553
Q ss_pred CCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHH
Q 040403 391 RENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEA 448 (623)
Q Consensus 391 r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 448 (623)
..+|.+.++ ++|++|-+.|.++.|+.++|+.
T Consensus 199 -------------------------T~~l~~~~~--~ADIvVsAvGkp~~i~~~~ik~ 229 (297)
T PRK14168 199 -------------------------SKNLARHCQ--RADILIVAAGVPNLVKPEWIKP 229 (297)
T ss_pred -------------------------CcCHHHHHh--hCCEEEEecCCcCccCHHHcCC
Confidence 123777788 8999999999999999998873
No 126
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=86.92 E-value=1.7 Score=45.79 Aligned_cols=108 Identities=19% Similarity=0.292 Sum_probs=62.4
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLW 414 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~ 414 (623)
|++.+|+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+=+-.. +++. | .++.. .++ +..
T Consensus 28 L~~s~VlVvG~GGVGs~vae~Lar~-----GV---------g~itLiD~D~V~~s---NlnR-Q-~~~~~-~~v---G~~ 84 (268)
T PRK15116 28 FADAHICVVGIGGVGSWAAEALART-----GI---------GAITLIDMDDVCVT---NTNR-Q-IHALR-DNV---GLA 84 (268)
T ss_pred hcCCCEEEECcCHHHHHHHHHHHHc-----CC---------CEEEEEeCCEeccc---cccc-c-cccCh-hhc---ChH
Confidence 8899999999999999999999886 96 77999998744332 3431 2 11210 010 011
Q ss_pred CCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCCC
Q 040403 415 EGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNN 468 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~ 468 (623)
...-+.+-+..+.|++-|-.- ...++++-+... -...-.=||-+.-|+.++
T Consensus 85 Kve~~~~rl~~INP~~~V~~i--~~~i~~e~~~~l-l~~~~D~VIdaiD~~~~k 135 (268)
T PRK15116 85 KAEVMAERIRQINPECRVTVV--DDFITPDNVAEY-MSAGFSYVIDAIDSVRPK 135 (268)
T ss_pred HHHHHHHHHHhHCCCcEEEEE--ecccChhhHHHH-hcCCCCEEEEcCCCHHHH
Confidence 122356666677777755432 334455544444 211123355666666543
No 127
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.57 E-value=8.7 Score=41.07 Aligned_cols=135 Identities=13% Similarity=0.226 Sum_probs=89.1
Q ss_pred HHHHHHHHHhC--Cc---eeeecccCCCchHHHHHHHHhc--cCC---------ccccCcchhHHHHHHHHHHHHHHhCC
Q 040403 267 DEFMEAIFTRW--PN---VIVQFEDFQSKWAFKLLQRYRY--KYR---------MFNDDVQGTAGVAVAGLLGAVRAQGR 330 (623)
Q Consensus 267 defv~av~~~~--P~---~lIqfEDf~~~nAf~lL~ryr~--~~~---------~FNDDiQGTaaV~lAgll~A~r~~g~ 330 (623)
+|+.+.+.++- |+ .++|+==.+.-+..++++...- .+= .|..|-.+-.-+|-.|++.=++-.|.
T Consensus 70 ~el~~~I~~lN~d~~V~GIlvqlPlP~~i~~~~i~~~I~p~KDVDGl~p~n~g~l~~g~~~~~~PcTp~avi~lL~~~~i 149 (287)
T PRK14181 70 SDILKLIHRLNNDPNIHGILVQLPLPKHLDAQAILQAISPDKDVDGLHPVNMGKLLLGETDGFIPCTPAGIIELLKYYEI 149 (287)
T ss_pred HHHHHHHHHHhCCCCCCeEEEcCCCCCCcCHHHHHhccCcccCcccCChhhHHHHhcCCCCCCCCCCHHHHHHHHHHhCC
Confidence 56777777774 54 3777643333344444444321 111 23344334556788888888999999
Q ss_pred CCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhc
Q 040403 331 SMIDFPKQKIVVAGAG-SAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEIS 409 (623)
Q Consensus 331 ~~~~l~d~riv~~GAG-sAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~ 409 (623)
+ |+.+++||+|-+ ..|.-+|.||... |.+. ...+.+|.++
T Consensus 150 ~---l~Gk~vvViGrS~iVGkPla~lL~~~-----~~~~------~AtVtvchs~------------------------- 190 (287)
T PRK14181 150 P---LHGRHVAIVGRSNIVGKPLAALLMQK-----HPDT------NATVTLLHSQ------------------------- 190 (287)
T ss_pred C---CCCCEEEEECCCccchHHHHHHHHhC-----cCCC------CCEEEEeCCC-------------------------
Confidence 9 999999999986 5688888887652 4211 1245555442
Q ss_pred ccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHH
Q 040403 410 RQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEA 448 (623)
Q Consensus 410 ~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 448 (623)
..+|.+.++ ++|++|-..|.++.++.++|+.
T Consensus 191 ------T~~l~~~~~--~ADIvV~AvG~p~~i~~~~ik~ 221 (287)
T PRK14181 191 ------SENLTEILK--TADIIIAAIGVPLFIKEEMIAE 221 (287)
T ss_pred ------CCCHHHHHh--hCCEEEEccCCcCccCHHHcCC
Confidence 234777777 8999999999999999998873
No 128
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=86.54 E-value=1.5 Score=45.93 Aligned_cols=47 Identities=15% Similarity=0.151 Sum_probs=35.3
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 320 GLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 320 gll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
|++.+++..|.+ . +.+++++|||-|+.+|+-.|.+. |. ++|+++++.
T Consensus 109 Gf~~~L~~~~~~---~-~~~vlilGaGGaarAi~~aL~~~-----g~---------~~i~i~nR~ 155 (272)
T PRK12550 109 AIAKLLASYQVP---P-DLVVALRGSGGMAKAVAAALRDA-----GF---------TDGTIVARN 155 (272)
T ss_pred HHHHHHHhcCCC---C-CCeEEEECCcHHHHHHHHHHHHC-----CC---------CEEEEEeCC
Confidence 455677766655 3 45999999999999988777653 75 569999984
No 129
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.52 E-value=3 Score=44.60 Aligned_cols=131 Identities=14% Similarity=0.191 Sum_probs=86.5
Q ss_pred HHHHHHHHHhC--Cc---eeeecc---cCCCchHHHHHHHHhcc--C------CccccCc-chhHHHHHHHHHHHHHHhC
Q 040403 267 DEFMEAIFTRW--PN---VIVQFE---DFQSKWAFKLLQRYRYK--Y------RMFNDDV-QGTAGVAVAGLLGAVRAQG 329 (623)
Q Consensus 267 defv~av~~~~--P~---~lIqfE---Df~~~nAf~lL~ryr~~--~------~~FNDDi-QGTaaV~lAgll~A~r~~g 329 (623)
+||.+.+.++- |+ .++|+= ++.....++.+.-.+|- + ..|..|. .+-.-+|-.|++.=++..+
T Consensus 76 ~~l~~~I~~lN~d~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~~~PcTp~avi~lL~~~~ 155 (294)
T PRK14187 76 SSLIEKINELNNDDSVHGILVQLPVPNHIDKNLIINTIDPEKDVDGFHNENVGRLFTGQKKNCLIPCTPKGCLYLIKTIT 155 (294)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhHHHHhCCCCCCCccCcCHHHHHHHHHHhC
Confidence 57777887774 54 367754 44333333222222220 1 1222332 2345667788888899999
Q ss_pred CCCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhh
Q 040403 330 RSMIDFPKQKIVVAGAG-SAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEI 408 (623)
Q Consensus 330 ~~~~~l~d~riv~~GAG-sAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~ 408 (623)
.+ ++.+++|++|.+ ..|.-+|.||... |. .+.+|+|+
T Consensus 156 i~---l~Gk~vvViGrS~iVGkPla~lL~~~-----~a----------TVt~chs~------------------------ 193 (294)
T PRK14187 156 RN---LSGSDAVVIGRSNIVGKPMACLLLGE-----NC----------TVTTVHSA------------------------ 193 (294)
T ss_pred CC---CCCCEEEEECCCccchHHHHHHHhhC-----CC----------EEEEeCCC------------------------
Confidence 99 999999999986 5788888887652 53 45666663
Q ss_pred cccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHH
Q 040403 409 SRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEA 448 (623)
Q Consensus 409 ~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 448 (623)
..+|.+.++ ++|++|-..|.++.++.++|+.
T Consensus 194 -------T~~l~~~~~--~ADIvVsAvGkp~~i~~~~ik~ 224 (294)
T PRK14187 194 -------TRDLADYCS--KADILVAAVGIPNFVKYSWIKK 224 (294)
T ss_pred -------CCCHHHHHh--hCCEEEEccCCcCccCHHHcCC
Confidence 123666677 8999999999999999998873
No 130
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=86.48 E-value=5.9 Score=41.61 Aligned_cols=100 Identities=18% Similarity=0.213 Sum_probs=63.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGAS 418 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~ 418 (623)
+|-|+|.|..|..+|..|.+. | -++.++|++ .+.-..++.. . .....+
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~-----g----------~~V~~~dr~----------~~~~~~l~~~--g-----~~~~~s 49 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR-----G----------HDCVGYDHD----------QDAVKAMKED--R-----TTGVAN 49 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC-----C----------CEEEEEECC----------HHHHHHHHHc--C-----CcccCC
Confidence 799999999999999988764 6 246667763 1111223210 1 122346
Q ss_pred HHHHHhhc-CCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHH
Q 040403 419 LVEVVQQV-KPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPE 474 (623)
Q Consensus 419 L~e~V~~v-kptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpe 474 (623)
+.|+++.. +||++|=+- ..+ ..+++++.++....+..||+-+||.. ++-+-+
T Consensus 50 ~~~~~~~~~~~dvIi~~v-p~~-~~~~v~~~l~~~l~~g~ivid~st~~--~~~t~~ 102 (298)
T TIGR00872 50 LRELSQRLSAPRVVWVMV-PHG-IVDAVLEELAPTLEKGDIVIDGGNSY--YKDSLR 102 (298)
T ss_pred HHHHHhhcCCCCEEEEEc-Cch-HHHHHHHHHHhhCCCCCEEEECCCCC--cccHHH
Confidence 66666543 688887443 345 88999988833345678999999865 344443
No 131
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=86.38 E-value=3 Score=44.84 Aligned_cols=135 Identities=15% Similarity=0.133 Sum_probs=83.2
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcc---cCCCCCCChhhHHhHHHhhhhcccccC
Q 040403 339 KIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLI---TEDRENIDPDAKPFARKVNEISRQGLW 414 (623)
Q Consensus 339 riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi---~~~r~~l~~~~~~fA~~~~~~~~~~~~ 414 (623)
||.|+|| |.-|..+|..|+.. |+-. .+..-.+.|+|.+.-. ....-||.+...++.. . ..
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~-----~~~~---~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~---~-----~~ 64 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG-----RMLG---KDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLD---G-----VV 64 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc-----cccC---CCCccEEEEEecCCcccccceeEeehhcccchhcC---c-----ee
Confidence 6899999 99999999887753 5420 0001169999984221 1111234443323310 1 01
Q ss_pred CCCCHHHHHhhcCCcEEEeccCCC---CC-----------CCHHHHHHcccCC-CCCCEEEecCCCCCCCCCCHHHHhcc
Q 040403 415 EGASLVEVVQQVKPDVLLGLSAVG---GL-----------FSKEVLEAMRGST-STRPAIFAMSNPTNNAECTPEEAFSI 479 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLIG~S~~~---g~-----------Ft~evv~~M~a~~-~erPIIFaLSNPt~~~E~tpeda~~w 479 (623)
...+..+.++ +.|++|=+.+.+ |- .=+++++.| .++ ++.-||+-.|||. .+..--++++
T Consensus 65 ~~~~~~~~~~--~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i-~~~~~~~~iiivvsNPv---Dv~t~v~~~~ 138 (324)
T TIGR01758 65 PTHDPAVAFT--DVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRAL-DKLAKKDCKVLVVGNPA---NTNALVLSNY 138 (324)
T ss_pred ccCChHHHhC--CCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHH-HhhCCCCeEEEEeCCcH---HHHHHHHHHH
Confidence 1224567777 789888555543 21 015677888 788 4899999999998 7777777777
Q ss_pred cCC--cEEEecCCCCCcc
Q 040403 480 VGD--NIIFASGSPFKDV 495 (623)
Q Consensus 480 T~G--rai~AtGsPF~pv 495 (623)
+.+ +-+|.||+-.+..
T Consensus 139 sg~~~~~vig~gt~LDs~ 156 (324)
T TIGR01758 139 APSIPPKNFSALTRLDHN 156 (324)
T ss_pred cCCCCcceEEEeeehHHH
Confidence 732 3378888755543
No 132
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=86.01 E-value=4.9 Score=40.18 Aligned_cols=100 Identities=23% Similarity=0.291 Sum_probs=58.3
Q ss_pred eEEEeC-cchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhh-hhccccc---
Q 040403 339 KIVVAG-AGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVN-EISRQGL--- 413 (623)
Q Consensus 339 riv~~G-AGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~-~~~~~~~--- 413 (623)
||.|+| +|.-|..+|..+.+. | .+++++|++ . +.+ ..+++... .+...+.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~-----G----------~~V~v~~r~----~--~~~----~~l~~~~~~~~~~~g~~~~ 56 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKA-----G----------NKIIIGSRD----L--EKA----EEAAAKALEELGHGGSDIK 56 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhC-----C----------CEEEEEEcC----H--HHH----HHHHHHHHhhccccCCCce
Confidence 799997 899999999998764 5 357777663 1 111 11221100 0000000
Q ss_pred CCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCCC
Q 040403 414 WEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNN 468 (623)
Q Consensus 414 ~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~ 468 (623)
-...+..++++ ++|++| ++. +-...+++++.+ ...-...+|+.++||...
T Consensus 57 ~~~~~~~ea~~--~aDvVi-lav-p~~~~~~~l~~l-~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 57 VTGADNAEAAK--RADVVI-LAV-PWDHVLKTLESL-RDELSGKLVISPVVPLAS 106 (219)
T ss_pred EEEeChHHHHh--cCCEEE-EEC-CHHHHHHHHHHH-HHhccCCEEEEeccCcee
Confidence 01235678887 778776 442 333447888877 433334799999999853
No 133
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=85.95 E-value=1.4 Score=42.39 Aligned_cols=94 Identities=22% Similarity=0.373 Sum_probs=49.4
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC-------------CcccCCCCCCChhhHHh
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK-------------GLITEDRENIDPDAKPF 401 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~-------------GLi~~~r~~l~~~~~~f 401 (623)
+.-.+|||.|+|.+|.|.++++... |.. +...|.. ++.+.....+.. +.|
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~l-----Ga~----------v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~ 80 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGL-----GAE----------VVVPDERPERLRQLESLGAYFIEVDYEDHLER--KDF 80 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHT-----T-E----------EEEEESSHHHHHHHHHTTTEESEETTTTTTTS--B-C
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHC-----CCE----------EEeccCCHHHHHhhhcccCceEEEcccccccc--ccc
Confidence 5668999999999999999988774 742 3333432 111110000100 003
Q ss_pred HHHhhhhcccccCCCCCHHHHHhhcCCcEEEec-----cCCCCCCCHHHHHHc
Q 040403 402 ARKVNEISRQGLWEGASLVEVVQQVKPDVLLGL-----SAVGGLFSKEVLEAM 449 (623)
Q Consensus 402 A~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~-----S~~~g~Ft~evv~~M 449 (623)
++.... +. .......|.+.++ ..|++|+. ...|-+||++.++.|
T Consensus 81 ~~~~~~-~~-~~~~~~~f~~~i~--~~d~vI~~~~~~~~~~P~lvt~~~~~~m 129 (168)
T PF01262_consen 81 DKADYY-EH-PESYESNFAEFIA--PADIVIGNGLYWGKRAPRLVTEEMVKSM 129 (168)
T ss_dssp CHHHCH-HH-CCHHHHHHHHHHH--H-SEEEEHHHBTTSS---SBEHHHHHTS
T ss_pred chhhhh-HH-HHHhHHHHHHHHh--hCcEEeeecccCCCCCCEEEEhHHhhcc
Confidence 221100 00 0111234888888 67999974 235678999999999
No 134
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=85.74 E-value=0.81 Score=50.67 Aligned_cols=128 Identities=15% Similarity=0.099 Sum_probs=72.9
Q ss_pred eEEEeCcchHHHHHHH--HHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCC
Q 040403 339 KIVVAGAGSAGLGVLN--AARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEG 416 (623)
Q Consensus 339 riv~~GAGsAg~GIA~--ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~ 416 (623)
||.|+|||+.|.+.+- .|+. .. .+ +-.+++|+|.+-=..+ .+...-+.++... . ..+.....
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~---~~-~~-------~g~eV~L~Did~e~l~---~~~~~~~~~~~~~-~-~~~~I~~t 65 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLK---TP-EL-------SGSTIALMDIDEERLE---TVEILAKKIVEEL-G-APLKIEAT 65 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhc---CC-CC-------CCCEEEEECCCHHHHH---HHHHHHHHHHHhc-C-CCeEEEEe
Confidence 7999999998887653 2221 10 11 1257999997421000 0000001111100 0 00111235
Q ss_pred CCHHHHHhhcCCcEEEeccCCC---------------CCCC---------------------HHHHHHcccCCCCCCEEE
Q 040403 417 ASLVEVVQQVKPDVLLGLSAVG---------------GLFS---------------------KEVLEAMRGSTSTRPAIF 460 (623)
Q Consensus 417 ~~L~e~V~~vkptvLIG~S~~~---------------g~Ft---------------------~evv~~M~a~~~erPIIF 460 (623)
.++.++++ +.|++|=.-..+ |.|. .++.+.| .++|++.+++
T Consensus 66 tD~~eal~--~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i-~~~~p~a~~i 142 (423)
T cd05297 66 TDRREALD--GADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDI-EELCPDAWLL 142 (423)
T ss_pred CCHHHHhc--CCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHH-HHHCCCCEEE
Confidence 67999998 889887443321 1221 2777777 7778899999
Q ss_pred ecCCCCCCCCCCHHHHhcccCCcEEEecC
Q 040403 461 AMSNPTNNAECTPEEAFSIVGDNIIFASG 489 (623)
Q Consensus 461 aLSNPt~~~E~tpeda~~wT~Grai~AtG 489 (623)
=.|||. -+..+-+++.++ .-++.+|
T Consensus 143 ~~tNPv---~i~t~~~~k~~~-~rviG~c 167 (423)
T cd05297 143 NYANPM---AELTWALNRYTP-IKTVGLC 167 (423)
T ss_pred EcCChH---HHHHHHHHHhCC-CCEEEEC
Confidence 999998 344455567775 5678877
No 135
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=85.70 E-value=7.8 Score=44.74 Aligned_cols=161 Identities=18% Similarity=0.205 Sum_probs=100.3
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccC--CCC-CCChhhHHhHHHhhhhcccc
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITE--DRE-NIDPDAKPFARKVNEISRQG 412 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~--~r~-~l~~~~~~fA~~~~~~~~~~ 412 (623)
.+--++|+|+|..|+|||.-+... |++ +.||+++-+-.. +|. .|=+.-..|+...
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~R-----Gl~----------v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~------- 68 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGR-----GLK----------VALVEKGDLASGTSSRSTKLIHGGLRYLEQY------- 68 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhC-----CCe----------EEEEecCcccCcccCccccCccchhhhhhhc-------
Confidence 456789999999999999988774 974 678888776533 332 3544445665321
Q ss_pred cCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCC--CCCEEEecCCCCCCCCCCHHHHhcccCCcEEEecCC
Q 040403 413 LWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTS--TRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGS 490 (623)
Q Consensus 413 ~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~--erPIIFaLSNPt~~~E~tpeda~~wT~Grai~AtGs 490 (623)
+..=..|++.. .+++..+ |-|+ +.|.+||..+=+
T Consensus 69 --e~~lvrEal~E-----------------r~vL~~~-APH~v~p~~~~lp~~~~~------------------------ 104 (532)
T COG0578 69 --EFSLVREALAE-----------------REVLLRI-APHLVEPLPFLLPHLPGL------------------------ 104 (532)
T ss_pred --chHHHHHHHHH-----------------HHHHHHh-CccccccCcCeEeccCCc------------------------
Confidence 11113355542 5677777 6654 344556554410
Q ss_pred CCCccccCCCeeccCCCCccccchhHHHHHHHHcCC-ccc--CHHHHHHHHHHHHcccCcccccCCccccCCCCcccchH
Q 040403 491 PFKDVDLGNGHIGHCNQGNNMYLFPGVGLGTLLSGS-RII--SDGMLQAAAECLAEYMTEEEVVKGKIYPSISSIRNITK 567 (623)
Q Consensus 491 PF~pv~~~~G~~~~p~Q~NN~yiFPGiglG~~~~~a-~~I--td~m~~aAA~aLA~~v~~~~l~~g~l~P~~~~ir~vs~ 567 (623)
---.+++.|+.+...+++. +.. +..+..+++..+.-.+.++-+..+..||.-..- - .
T Consensus 105 -----------------~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vd--d-a 164 (532)
T COG0578 105 -----------------RDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVD--D-A 164 (532)
T ss_pred -----------------ccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceec--h-H
Confidence 0024588999999999993 333 222233356666666666666667888876542 2 2
Q ss_pred HHHHHHHHHHHHcCc
Q 040403 568 EVAAAVVKEALEEDL 582 (623)
Q Consensus 568 ~VA~aVa~~A~~~Gl 582 (623)
+...+|++.|.+.|-
T Consensus 165 RLv~~~a~~A~~~Ga 179 (532)
T COG0578 165 RLVAANARDAAEHGA 179 (532)
T ss_pred HHHHHHHHHHHhccc
Confidence 566788888888873
No 136
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=85.69 E-value=5.8 Score=41.07 Aligned_cols=99 Identities=15% Similarity=0.156 Sum_probs=55.6
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcC-CCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLG-NNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWE 415 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~G-ls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~ 415 (623)
..||.|+|+|.-|..||+.|+.. | +.. .+|+++|+. -.+....++... . ...
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~-----g~~~~-------~~v~v~~r~---------~~~~~~~l~~~~-g-----~~~ 55 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHA-----NVVKG-------EQITVSNRS---------NETRLQELHQKY-G-----VKG 55 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-----CCCCc-------ceEEEECCC---------CHHHHHHHHHhc-C-----ceE
Confidence 46899999999999999988764 5 222 457777752 011222333210 1 112
Q ss_pred CCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCC
Q 040403 416 GASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPT 466 (623)
Q Consensus 416 ~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt 466 (623)
..+..|+++ +.|++| ++-.+. ..+++++.++....+..+|..+++-+
T Consensus 56 ~~~~~e~~~--~aDvVi-lav~p~-~~~~vl~~l~~~~~~~~liIs~~aGi 102 (279)
T PRK07679 56 THNKKELLT--DANILF-LAMKPK-DVAEALIPFKEYIHNNQLIISLLAGV 102 (279)
T ss_pred eCCHHHHHh--cCCEEE-EEeCHH-HHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 345667776 566555 332222 33566666622234556777776654
No 137
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.42 E-value=3.9 Score=43.82 Aligned_cols=135 Identities=12% Similarity=0.111 Sum_probs=85.0
Q ss_pred HHHHHHHHHhC--Cc---eeeecccCCCchHHHHHHHHh--ccCCccccCc--------chhHHHHHHHHHHHHHHhCCC
Q 040403 267 DEFMEAIFTRW--PN---VIVQFEDFQSKWAFKLLQRYR--YKYRMFNDDV--------QGTAGVAVAGLLGAVRAQGRS 331 (623)
Q Consensus 267 defv~av~~~~--P~---~lIqfEDf~~~nAf~lL~ryr--~~~~~FNDDi--------QGTaaV~lAgll~A~r~~g~~ 331 (623)
+||.+.+.++- |+ .++|+==.+.-+..++++... +.+=.||..- .+-.-+|-.|++.=++-.+.+
T Consensus 75 ~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~av~~lL~~~~i~ 154 (293)
T PRK14185 75 EELLAKVRELNQDDDVDGFIVQLPLPKHISEQKVIEAIDYRKDVDGFHPINVGRMSIGLPCFVSATPNGILELLKRYHIE 154 (293)
T ss_pred HHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcccCcCCCCHhhHHHHhCCCCCCCCCCHHHHHHHHHHhCCC
Confidence 56777777664 54 377763222223333333322 1122222211 223455778888888888998
Q ss_pred CCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcc
Q 040403 332 MIDFPKQKIVVAGAG-SAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISR 410 (623)
Q Consensus 332 ~~~l~d~riv~~GAG-sAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~ 410 (623)
|+++++||+|.+ ..|.-+|.||... |.+. -..+.+|.|+
T Consensus 155 ---l~GK~vvViGrS~iVGkPla~lL~~~-----~~~~------~aTVtvchs~-------------------------- 194 (293)
T PRK14185 155 ---TSGKKCVVLGRSNIVGKPMAQLMMQK-----AYPG------DCTVTVCHSR-------------------------- 194 (293)
T ss_pred ---CCCCEEEEECCCccchHHHHHHHHcC-----CCCC------CCEEEEecCC--------------------------
Confidence 999999999986 5688888877652 4322 1234455443
Q ss_pred cccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHH
Q 040403 411 QGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEA 448 (623)
Q Consensus 411 ~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 448 (623)
..+|.+.++ ++|++|-..|.++.++.++|+.
T Consensus 195 -----T~nl~~~~~--~ADIvIsAvGkp~~i~~~~vk~ 225 (293)
T PRK14185 195 -----SKNLKKECL--EADIIIAALGQPEFVKADMVKE 225 (293)
T ss_pred -----CCCHHHHHh--hCCEEEEccCCcCccCHHHcCC
Confidence 234777788 8999999999999999988873
No 138
>PRK06141 ornithine cyclodeaminase; Validated
Probab=85.31 E-value=11 Score=40.05 Aligned_cols=108 Identities=16% Similarity=0.104 Sum_probs=64.5
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWE 415 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~ 415 (623)
...+++|+|+|..|..++..++.. .+ .++|+++|+. .+..+.|++.-... +.....
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~----~~---------~~~V~V~~Rs----------~~~a~~~a~~~~~~-g~~~~~ 179 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASV----RP---------IKQVRVWGRD----------PAKAEALAAELRAQ-GFDAEV 179 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhc----CC---------CCEEEEEcCC----------HHHHHHHHHHHHhc-CCceEE
Confidence 568999999999999988766553 14 2678888873 22234555321110 000123
Q ss_pred CCCHHHHHhhcCCcEEEeccCCC-CCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHH
Q 040403 416 GASLVEVVQQVKPDVLLGLSAVG-GLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEE 475 (623)
Q Consensus 416 ~~~L~e~V~~vkptvLIG~S~~~-g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tped 475 (623)
..++.++++ +.|++|-+++.+ -.|+.+.++.= + =|+.-=|++..+-|+.++-
T Consensus 180 ~~~~~~av~--~aDIVi~aT~s~~pvl~~~~l~~g----~--~i~~ig~~~~~~~El~~~~ 232 (314)
T PRK06141 180 VTDLEAAVR--QADIISCATLSTEPLVRGEWLKPG----T--HLDLVGNFTPDMRECDDEA 232 (314)
T ss_pred eCCHHHHHh--cCCEEEEeeCCCCCEecHHHcCCC----C--EEEeeCCCCcccccCCHHH
Confidence 467899998 899998766543 23555544321 1 2333335566677888754
No 139
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=85.20 E-value=3.7 Score=44.11 Aligned_cols=131 Identities=16% Similarity=0.201 Sum_probs=86.2
Q ss_pred HHHHHHHHHhC--Cc---eeeecccCCCchHHHHHHHH---hcc--C------CccccC-cchhHHHHHHHHHHHHHHhC
Q 040403 267 DEFMEAIFTRW--PN---VIVQFEDFQSKWAFKLLQRY---RYK--Y------RMFNDD-VQGTAGVAVAGLLGAVRAQG 329 (623)
Q Consensus 267 defv~av~~~~--P~---~lIqfEDf~~~nAf~lL~ry---r~~--~------~~FNDD-iQGTaaV~lAgll~A~r~~g 329 (623)
+|+.+.+.++- |+ .++|+==.+.-+..++++.. +|- + ..|.++ ..+-.-+|-+|++.=++-.|
T Consensus 83 ~el~~~I~~lN~D~~V~GIlvq~PlP~~id~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~avi~lL~~~~ 162 (299)
T PLN02516 83 AELISKVHELNANPDVHGILVQLPLPKHINEEKILNEISLEKDVDGFHPLNIGKLAMKGREPLFLPCTPKGCLELLSRSG 162 (299)
T ss_pred HHHHHHHHHHhCCCCCCeEEEecCCCCCcCHHHHHhccCcccccCccCHhhHhhHhcCCCCCCCCCCCHHHHHHHHHHhC
Confidence 56777777764 54 36775422233333333332 220 1 122221 23345667778888888899
Q ss_pred CCCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhh
Q 040403 330 RSMIDFPKQKIVVAGAG-SAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEI 408 (623)
Q Consensus 330 ~~~~~l~d~riv~~GAG-sAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~ 408 (623)
.+ |+.+++||+|-+ ..|.-+|.||... | ..+.+|+|+
T Consensus 163 i~---l~Gk~vvVIGRS~iVGkPla~lL~~~-----~----------ATVtvchs~------------------------ 200 (299)
T PLN02516 163 IP---IKGKKAVVVGRSNIVGLPVSLLLLKA-----D----------ATVTVVHSR------------------------ 200 (299)
T ss_pred CC---CCCCEEEEECCCccchHHHHHHHHHC-----C----------CEEEEeCCC------------------------
Confidence 98 999999999986 5688888777652 5 346677663
Q ss_pred cccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHH
Q 040403 409 SRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEA 448 (623)
Q Consensus 409 ~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 448 (623)
..+|.+.++ ++|++|-..|.++.|+.++|+.
T Consensus 201 -------T~nl~~~~~--~ADIvv~AvGk~~~i~~~~vk~ 231 (299)
T PLN02516 201 -------TPDPESIVR--EADIVIAAAGQAMMIKGDWIKP 231 (299)
T ss_pred -------CCCHHHHHh--hCCEEEEcCCCcCccCHHHcCC
Confidence 123777778 8999999999999999999884
No 140
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.17 E-value=3.6 Score=43.88 Aligned_cols=132 Identities=13% Similarity=0.194 Sum_probs=85.6
Q ss_pred HHHHHHHHHhC--Cc---eeeecc---cCCCchHHHHHHHHhccCCccccCc--------chhHHHHHHHHHHHHHHhCC
Q 040403 267 DEFMEAIFTRW--PN---VIVQFE---DFQSKWAFKLLQRYRYKYRMFNDDV--------QGTAGVAVAGLLGAVRAQGR 330 (623)
Q Consensus 267 defv~av~~~~--P~---~lIqfE---Df~~~nAf~lL~ryr~~~~~FNDDi--------QGTaaV~lAgll~A~r~~g~ 330 (623)
+||.+.+.+.- |+ .++|+= .+.....+..++-.+| +=.||..- .+-.-+|-.|++.-++-.|.
T Consensus 76 ~el~~~I~~lN~D~~V~GIlvqlPlP~~id~~~i~~~I~p~KD-VDGl~~~n~g~l~~~~~~~~PcTp~av~~ll~~~~i 154 (284)
T PRK14193 76 EELNAVIDELNADPACTGYIVQLPLPKHLDENAVLERIDPAKD-ADGLHPTNLGRLVLNEPAPLPCTPRGIVHLLRRYDV 154 (284)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcccC-ccCCChhhhhHHhCCCCCCCCCCHHHHHHHHHHhCC
Confidence 56777777775 54 366653 3333333333322222 22222211 22345677888888899999
Q ss_pred CCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhc
Q 040403 331 SMIDFPKQKIVVAGAG-SAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEIS 409 (623)
Q Consensus 331 ~~~~l~d~riv~~GAG-sAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~ 409 (623)
+ |+.+++|++|.+ ..|.-+|.||..- .+ | ..+.+|.++
T Consensus 155 ~---l~Gk~vvViGrS~~VGkPla~lL~~~--~~-~----------atVtvchs~------------------------- 193 (284)
T PRK14193 155 E---LAGAHVVVIGRGVTVGRPIGLLLTRR--SE-N----------ATVTLCHTG------------------------- 193 (284)
T ss_pred C---CCCCEEEEECCCCcchHHHHHHHhhc--cC-C----------CEEEEeCCC-------------------------
Confidence 9 999999999985 6788888887541 01 3 235566553
Q ss_pred ccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHH
Q 040403 410 RQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEA 448 (623)
Q Consensus 410 ~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 448 (623)
..+|.+.++ ++|++|-+.|.++.++.++|+.
T Consensus 194 ------T~~l~~~~k--~ADIvV~AvGkp~~i~~~~ik~ 224 (284)
T PRK14193 194 ------TRDLAAHTR--RADIIVAAAGVAHLVTADMVKP 224 (284)
T ss_pred ------CCCHHHHHH--hCCEEEEecCCcCccCHHHcCC
Confidence 124777788 8999999999999999988873
No 141
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=85.16 E-value=1.7 Score=47.52 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=21.4
Q ss_pred CCceEEEeCcchHHHHHHHHHHHH
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~ 359 (623)
...+|.|+|+|+-|+.+|..+.+-
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n 33 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGEN 33 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhc
Confidence 457999999999999999999873
No 142
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.10 E-value=11 Score=40.13 Aligned_cols=131 Identities=11% Similarity=0.161 Sum_probs=87.2
Q ss_pred HHHHHHHHHhC--Cc---eeeecccCCCchHHHHHHHHh--ccCCccccC--------cchhHHHHHHHHHHHHHHhCCC
Q 040403 267 DEFMEAIFTRW--PN---VIVQFEDFQSKWAFKLLQRYR--YKYRMFNDD--------VQGTAGVAVAGLLGAVRAQGRS 331 (623)
Q Consensus 267 defv~av~~~~--P~---~lIqfEDf~~~nAf~lL~ryr--~~~~~FNDD--------iQGTaaV~lAgll~A~r~~g~~ 331 (623)
+||.+.+++.- |+ .++|+==...-+..++++... +.+=.||.- ..+-.-+|-.|++.=++-.|.+
T Consensus 74 ~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~avi~lL~~~~i~ 153 (282)
T PRK14169 74 ADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDPDKDVDGFSPVSVGRLWANEPTVVASTPYGIMALLDAYDID 153 (282)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhhcCcccCcccCChhhhHHHhcCCCCCCCCCHHHHHHHHHHhCCC
Confidence 57888888775 54 377764223333344444322 112222211 1234567778888888889999
Q ss_pred CCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcc
Q 040403 332 MIDFPKQKIVVAGAG-SAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISR 410 (623)
Q Consensus 332 ~~~l~d~riv~~GAG-sAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~ 410 (623)
++++++||+|.+ ..|.-+|.||... |. .+.+|.|+
T Consensus 154 ---l~Gk~vvViGrS~iVGkPla~lL~~~-----~a----------tVtichs~-------------------------- 189 (282)
T PRK14169 154 ---VAGKRVVIVGRSNIVGRPLAGLMVNH-----DA----------TVTIAHSK-------------------------- 189 (282)
T ss_pred ---CCCCEEEEECCCccchHHHHHHHHHC-----CC----------EEEEECCC--------------------------
Confidence 999999999986 5788888887652 53 35555543
Q ss_pred cccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHH
Q 040403 411 QGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEA 448 (623)
Q Consensus 411 ~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 448 (623)
..+|.+.++ ++|++|-..|.++.|+.++|+.
T Consensus 190 -----T~~l~~~~~--~ADIvI~AvG~p~~i~~~~vk~ 220 (282)
T PRK14169 190 -----TRNLKQLTK--EADILVVAVGVPHFIGADAVKP 220 (282)
T ss_pred -----CCCHHHHHh--hCCEEEEccCCcCccCHHHcCC
Confidence 123777777 8999999999999999998873
No 143
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.10 E-value=3.8 Score=43.75 Aligned_cols=131 Identities=13% Similarity=0.189 Sum_probs=88.4
Q ss_pred HHHHHHHHHhC--Cc---eeeecc---cCCCchHHHHHHHHhcc--C------CccccCcchhHHHHHHHHHHHHHHhCC
Q 040403 267 DEFMEAIFTRW--PN---VIVQFE---DFQSKWAFKLLQRYRYK--Y------RMFNDDVQGTAGVAVAGLLGAVRAQGR 330 (623)
Q Consensus 267 defv~av~~~~--P~---~lIqfE---Df~~~nAf~lL~ryr~~--~------~~FNDDiQGTaaV~lAgll~A~r~~g~ 330 (623)
+++.+.+.++- |+ .++|+= .+.....++.++-.+|- + ..|..+-.+-.-+|-+|++.=++..+.
T Consensus 76 ~~l~~~I~~LN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~g~~~~~~PcTp~av~~lL~~y~i 155 (288)
T PRK14171 76 NDLISKINELNLDNEISGIIVQLPLPSSIDKNKILSAVSPSKDIDGFHPLNVGYLHSGISQGFIPCTALGCLAVIKKYEP 155 (288)
T ss_pred HHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcccccccCCccchhhhhcCCCCCCcCCCHHHHHHHHHHhCC
Confidence 56777777765 54 377754 44443334333333331 1 122222234566788888899999999
Q ss_pred CCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhc
Q 040403 331 SMIDFPKQKIVVAGAG-SAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEIS 409 (623)
Q Consensus 331 ~~~~l~d~riv~~GAG-sAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~ 409 (623)
+ ++..++||+|-+ ..|.-+|.||... |. .+.+|+|+
T Consensus 156 ~---l~GK~vvViGrS~iVGkPla~lL~~~-----~A----------TVtichs~------------------------- 192 (288)
T PRK14171 156 N---LTGKNVVIIGRSNIVGKPLSALLLKE-----NC----------SVTICHSK------------------------- 192 (288)
T ss_pred C---CCCCEEEEECCCCcchHHHHHHHHHC-----CC----------EEEEeCCC-------------------------
Confidence 9 999999999986 5788888887652 53 35566653
Q ss_pred ccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHH
Q 040403 410 RQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEA 448 (623)
Q Consensus 410 ~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 448 (623)
..+|.+.++ ++|++|-..|.++.++.++|+.
T Consensus 193 ------T~~L~~~~~--~ADIvV~AvGkp~~i~~~~vk~ 223 (288)
T PRK14171 193 ------THNLSSITS--KADIVVAAIGSPLKLTAEYFNP 223 (288)
T ss_pred ------CCCHHHHHh--hCCEEEEccCCCCccCHHHcCC
Confidence 123777777 8999999999999999998873
No 144
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=84.86 E-value=6.5 Score=40.89 Aligned_cols=99 Identities=11% Similarity=0.076 Sum_probs=54.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcC-CCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLG-NNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEG 416 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~G-ls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~ 416 (623)
++|.|+|+|.-|..+|..|... | ++. .+++++|++. .+....+.. .+.. ....
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~-----g~~~~-------~~V~~~~r~~---------~~~~~~l~~---~~~~--~~~~ 55 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLET-----EVATP-------EEIILYSSSK---------NEHFNQLYD---KYPT--VELA 55 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHC-----CCCCc-------ccEEEEeCCc---------HHHHHHHHH---HcCC--eEEe
Confidence 4799999999999999988764 5 332 5688777631 011111111 1000 1113
Q ss_pred CCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCC
Q 040403 417 ASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPT 466 (623)
Q Consensus 417 ~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt 466 (623)
.+..++++ ++|++| ++. +....+++++.++....+..+|..++|-.
T Consensus 56 ~~~~e~~~--~aDvVi-lav-pp~~~~~vl~~l~~~l~~~~~ivS~~aGi 101 (277)
T PRK06928 56 DNEAEIFT--KCDHSF-ICV-PPLAVLPLLKDCAPVLTPDRHVVSIAAGV 101 (277)
T ss_pred CCHHHHHh--hCCEEE-Eec-CHHHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 45667766 667666 442 33334667766622223344566666654
No 145
>PRK14851 hypothetical protein; Provisional
Probab=84.68 E-value=4.6 Score=47.80 Aligned_cols=128 Identities=18% Similarity=0.190 Sum_probs=81.9
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCC--C------CCCChhhHHhHHHh-
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITED--R------ENIDPDAKPFARKV- 405 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~--r------~~l~~~~~~fA~~~- 405 (623)
|++.||+|+|+|..|.-+|..|+.+ |+ ++|.++|-+=+-..+ | .++...|..-++..
T Consensus 41 L~~~~VlIvG~GGlGs~va~~Lar~-----GV---------G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l 106 (679)
T PRK14851 41 LAEAKVAIPGMGGVGGVHLITMVRT-----GI---------GRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQA 106 (679)
T ss_pred HhcCeEEEECcCHHHHHHHHHHHHh-----CC---------CeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHH
Confidence 8899999999999999999988886 96 789999986332221 2 12333343333221
Q ss_pred hhhccc------ccC-CCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecC----------CCCCC
Q 040403 406 NEISRQ------GLW-EGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMS----------NPTNN 468 (623)
Q Consensus 406 ~~~~~~------~~~-~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLS----------NPt~~ 468 (623)
.++.+. ... ...++.+.++ +.|++|-+......-++..|... |..+..|+|++-. +|.
T Consensus 107 ~~inP~~~I~~~~~~i~~~n~~~~l~--~~DvVid~~D~~~~~~r~~l~~~-c~~~~iP~i~~g~~G~~g~~~~~~p~-- 181 (679)
T PRK14851 107 LSINPFLEITPFPAGINADNMDAFLD--GVDVVLDGLDFFQFEIRRTLFNM-AREKGIPVITAGPLGYSSAMLVFTPQ-- 181 (679)
T ss_pred HHhCCCCeEEEEecCCChHHHHHHHh--CCCEEEECCCCCcHHHHHHHHHH-HHHCCCCEEEeecccccceEEEEcCC--
Confidence 111110 000 1234677777 78999965532111134467666 7888999999754 676
Q ss_pred CCCCHHHHhcccCC
Q 040403 469 AECTPEEAFSIVGD 482 (623)
Q Consensus 469 ~E~tpeda~~wT~G 482 (623)
....++.|.+.++
T Consensus 182 -~~~~~~~~~~~~~ 194 (679)
T PRK14851 182 -GMGFDDYFNIGGK 194 (679)
T ss_pred -CCCHhHhccCCCC
Confidence 5788888888777
No 146
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.65 E-value=3.3 Score=44.30 Aligned_cols=81 Identities=12% Similarity=0.155 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeC-cchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCC
Q 040403 314 AGVAVAGLLGAVRAQGRSMIDFPKQKIVVAG-AGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRE 392 (623)
Q Consensus 314 aaV~lAgll~A~r~~g~~~~~l~d~riv~~G-AGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~ 392 (623)
.-+|-.|++.=++-.+.+ ++.++|+|+| .|..|..+|.+|... |. .+.+++++ +
T Consensus 138 ~PcTp~ai~~ll~~~~i~---~~Gk~V~viGrs~~mG~PmA~~L~~~-----g~----------tVtv~~~r-------T 192 (296)
T PRK14188 138 VPCTPLGCMMLLRRVHGD---LSGLNAVVIGRSNLVGKPMAQLLLAA-----NA----------TVTIAHSR-------T 192 (296)
T ss_pred cCCCHHHHHHHHHHhCCC---CCCCEEEEEcCCcchHHHHHHHHHhC-----CC----------EEEEECCC-------C
Confidence 456677888888888888 9999999999 999999999999864 74 34555432 1
Q ss_pred CCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHH
Q 040403 393 NIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEV 445 (623)
Q Consensus 393 ~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~ev 445 (623)
.+|.|+++ +.|++|-+-+.++.+++++
T Consensus 193 ------------------------~~l~e~~~--~ADIVIsavg~~~~v~~~~ 219 (296)
T PRK14188 193 ------------------------RDLPAVCR--RADILVAAVGRPEMVKGDW 219 (296)
T ss_pred ------------------------CCHHHHHh--cCCEEEEecCChhhcchhe
Confidence 13667777 7899998888888777765
No 147
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=84.62 E-value=1.2 Score=44.95 Aligned_cols=36 Identities=31% Similarity=0.457 Sum_probs=32.5
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
|+..+|+++|+|..|..||..|+.+ |+ .+|.++|.+
T Consensus 26 L~~~~V~ViG~GglGs~ia~~La~~-----Gv---------g~i~lvD~D 61 (212)
T PRK08644 26 LKKAKVGIAGAGGLGSNIAVALARS-----GV---------GNLKLVDFD 61 (212)
T ss_pred HhCCCEEEECcCHHHHHHHHHHHHc-----CC---------CeEEEEeCC
Confidence 7889999999999999999999875 85 679999986
No 148
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=84.55 E-value=8.8 Score=41.36 Aligned_cols=111 Identities=17% Similarity=0.150 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHHHHHHh---------C-----C--CCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhcc
Q 040403 312 GTAGVAVAGLLGAVRAQ---------G-----R--SMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSAR 375 (623)
Q Consensus 312 GTaaV~lAgll~A~r~~---------g-----~--~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~ 375 (623)
..|=-+++-+|+.+|-. | . ....|.+.+|.|+|.|..|..+|+.+... |.
T Consensus 105 ~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~-----G~--------- 170 (330)
T PRK12480 105 TIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAGF-----GA--------- 170 (330)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCCHHHHHHHHHHHhC-----CC---------
Confidence 34445677777776631 1 0 01248999999999999999999988753 74
Q ss_pred CeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEecc-CC---CCCCCHHHHHHccc
Q 040403 376 SQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLS-AV---GGLFSKEVLEAMRG 451 (623)
Q Consensus 376 ~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S-~~---~g~Ft~evv~~M~a 451 (623)
+++.+|+.. + ....+. ....+|.|+++ +.|+++=+- .. -+.|.++++..|
T Consensus 171 -~V~~~d~~~----~------~~~~~~-----------~~~~~l~ell~--~aDiVil~lP~t~~t~~li~~~~l~~m-- 224 (330)
T PRK12480 171 -TITAYDAYP----N------KDLDFL-----------TYKDSVKEAIK--DADIISLHVPANKESYHLFDKAMFDHV-- 224 (330)
T ss_pred -EEEEEeCCh----h------Hhhhhh-----------hccCCHHHHHh--cCCEEEEeCCCcHHHHHHHhHHHHhcC--
Confidence 577888641 0 001111 12246889998 788777332 22 267888888999
Q ss_pred CCCCCCEEEecCC
Q 040403 452 STSTRPAIFAMSN 464 (623)
Q Consensus 452 ~~~erPIIFaLSN 464 (623)
.+..++.-.|.
T Consensus 225 --k~gavlIN~aR 235 (330)
T PRK12480 225 --KKGAILVNAAR 235 (330)
T ss_pred --CCCcEEEEcCC
Confidence 55667776555
No 149
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=84.48 E-value=2.7 Score=43.61 Aligned_cols=99 Identities=20% Similarity=0.217 Sum_probs=57.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHh-h-h-hccc----
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKV-N-E-ISRQ---- 411 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~-~-~-~~~~---- 411 (623)
||.|+|+|..|..+|..|... | .+++++|+..-. ...+.+.. + . ...+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-----g----------~~V~~~~r~~~~----------~~~~~~~~~~~~~~~~~~~~~ 57 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-----G----------HDVTLWARDPEQ----------AAEINADRENPRYLPGIKLPD 57 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C----------CEEEEEECCHHH----------HHHHHHcCcccccCCCCcCCC
Confidence 799999999999999998764 6 346777774211 01111100 0 0 0000
Q ss_pred ccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCC-CCCCEEEecCCCCC
Q 040403 412 GLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGST-STRPAIFAMSNPTN 467 (623)
Q Consensus 412 ~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~-~erPIIFaLSNPt~ 467 (623)
+.....++.++++ ++|++|= +. +....+++++.+ ..+ .+.-+|..++|-..
T Consensus 58 ~~~~~~~~~~~~~--~~D~vi~-~v-~~~~~~~v~~~l-~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 58 NLRATTDLAEALA--DADLILV-AV-PSQALREVLKQL-KPLLPPDAPIVWATKGIE 109 (325)
T ss_pred CeEEeCCHHHHHh--CCCEEEE-eC-CHHHHHHHHHHH-HhhcCCCCEEEEEeeccc
Confidence 0112346777777 6787773 32 223568888877 433 45568888887543
No 150
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=84.46 E-value=17 Score=37.04 Aligned_cols=96 Identities=19% Similarity=0.230 Sum_probs=54.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGAS 418 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~ 418 (623)
||.|+|+|..|..+++-|... |... +.++++|+. .+..+.++..... .....+
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~-----g~~~-------~~i~v~~r~----------~~~~~~l~~~~~~-----~~~~~~ 54 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTS-----PADV-------SEIIVSPRN----------AQIAARLAERFPK-----VRIAKD 54 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhC-----CCCh-------heEEEECCC----------HHHHHHHHHHcCC-----ceEeCC
Confidence 799999999999999988763 6432 456777652 1112233321000 112346
Q ss_pred HHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCC
Q 040403 419 LVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTN 467 (623)
Q Consensus 419 L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~ 467 (623)
..|+++ +.|++| ++..+..+ +++++.. . ..+..+|+..+-+++
T Consensus 55 ~~~~~~--~aDvVi-lav~p~~~-~~vl~~l-~-~~~~~~vis~~ag~~ 97 (258)
T PRK06476 55 NQAVVD--RSDVVF-LAVRPQIA-EEVLRAL-R-FRPGQTVISVIAATD 97 (258)
T ss_pred HHHHHH--hCCEEE-EEeCHHHH-HHHHHHh-c-cCCCCEEEEECCCCC
Confidence 777776 456655 33223333 6677665 2 234567777666553
No 151
>PRK13243 glyoxylate reductase; Reviewed
Probab=84.31 E-value=9.5 Score=41.08 Aligned_cols=197 Identities=20% Similarity=0.135 Sum_probs=107.2
Q ss_pred CCce-eeecccCCCchHHHHHHHHhccCCccccC-c--chhHHHHHHHHHHHHHHh---------CC-------------
Q 040403 277 WPNV-IVQFEDFQSKWAFKLLQRYRYKYRMFNDD-V--QGTAGVAVAGLLGAVRAQ---------GR------------- 330 (623)
Q Consensus 277 ~P~~-lIqfEDf~~~nAf~lL~ryr~~~~~FNDD-i--QGTaaV~lAgll~A~r~~---------g~------------- 330 (623)
.|+. .|+.-=.+..| ..+-.--+..+++.|-- . +..|=-+++.+|+..|-. |.
T Consensus 65 ~p~Lk~I~~~~~G~d~-id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~ 143 (333)
T PRK13243 65 APRLRIVANYAVGYDN-IDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMF 143 (333)
T ss_pred CCCCeEEEecCccccc-cCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccc
Confidence 3553 45544444443 22222223356666632 2 223444677777776642 10
Q ss_pred CCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcc
Q 040403 331 SMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISR 410 (623)
Q Consensus 331 ~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~ 410 (623)
....|.+++|.|+|.|..|..+|+.+... |+ +++.+|+.. .. . .+. ..
T Consensus 144 ~g~~L~gktvgIiG~G~IG~~vA~~l~~~-----G~----------~V~~~d~~~-----~~------~-~~~---~~-- 191 (333)
T PRK13243 144 LGYDVYGKTIGIIGFGRIGQAVARRAKGF-----GM----------RILYYSRTR-----KP------E-AEK---EL-- 191 (333)
T ss_pred cccCCCCCEEEEECcCHHHHHHHHHHHHC-----CC----------EEEEECCCC-----Ch------h-hHH---Hc--
Confidence 00238999999999999999999998764 74 477788741 00 0 111 10
Q ss_pred cccCCCCCHHHHHhhcCCcEEEeccC----CCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccCCcEEE
Q 040403 411 QGLWEGASLVEVVQQVKPDVLLGLSA----VGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIF 486 (623)
Q Consensus 411 ~~~~~~~~L~e~V~~vkptvLIG~S~----~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~Grai~ 486 (623)
.....+|.|+++ +.|+++=.-- .-+.|+++.+..| .+..++.=.|.=.---|-.-.+|+ .+|+.-.
T Consensus 192 --~~~~~~l~ell~--~aDiV~l~lP~t~~T~~~i~~~~~~~m----k~ga~lIN~aRg~~vd~~aL~~aL--~~g~i~g 261 (333)
T PRK13243 192 --GAEYRPLEELLR--ESDFVSLHVPLTKETYHMINEERLKLM----KPTAILVNTARGKVVDTKALVKAL--KEGWIAG 261 (333)
T ss_pred --CCEecCHHHHHh--hCCEEEEeCCCChHHhhccCHHHHhcC----CCCeEEEECcCchhcCHHHHHHHH--HcCCeEE
Confidence 112347999998 7898885321 2478999999999 567777766653321222222233 3465443
Q ss_pred ecCCCCCccccCCCeeccCCCCccccchhHHHH
Q 040403 487 ASGSPFKDVDLGNGHIGHCNQGNNMYLFPGVGL 519 (623)
Q Consensus 487 AtGsPF~pv~~~~G~~~~p~Q~NN~yiFPGigl 519 (623)
|.=-=|++-..++ . .--+..|+++-|=+|-
T Consensus 262 AaLDV~~~EP~~~-~--pL~~~~nvilTPHia~ 291 (333)
T PRK13243 262 AGLDVFEEEPYYN-E--ELFSLKNVVLAPHIGS 291 (333)
T ss_pred EEeccCCCCCCCC-c--hhhcCCCEEECCcCCc
Confidence 3211121111111 0 1123458888887763
No 152
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.28 E-value=4.5 Score=43.08 Aligned_cols=130 Identities=14% Similarity=0.135 Sum_probs=84.2
Q ss_pred HHHHHHHHHhC--Cc---eeeecccCCCchHHHHHHHHhc--c---CC------ccccCcch-hHHHHHHHHHHHHHHhC
Q 040403 267 DEFMEAIFTRW--PN---VIVQFEDFQSKWAFKLLQRYRY--K---YR------MFNDDVQG-TAGVAVAGLLGAVRAQG 329 (623)
Q Consensus 267 defv~av~~~~--P~---~lIqfEDf~~~nAf~lL~ryr~--~---~~------~FNDDiQG-TaaV~lAgll~A~r~~g 329 (623)
+++++.+++.- |+ .++|+==.+.-|..++++...- . +. .|..+ .+ -.-+|-.|++.=++-.+
T Consensus 74 ~~l~~~I~~lN~d~~V~GIivqlPLp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~-~~~~~PcTp~avi~ll~~~~ 152 (282)
T PRK14182 74 AELLALIARLNADPAVHGILVQLPLPKHVDERAVLDAISPAKDADGFHPFNVGALSIGI-AGVPRPCTPAGVMRMLDEAR 152 (282)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcCCCCHhHHHHHhCCC-CCCCCCCCHHHHHHHHHHhC
Confidence 46677776664 54 3667543333344444443321 1 11 11111 12 24567788888889999
Q ss_pred CCCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhh
Q 040403 330 RSMIDFPKQKIVVAGAG-SAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEI 408 (623)
Q Consensus 330 ~~~~~l~d~riv~~GAG-sAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~ 408 (623)
.+ +++++++|+|-+ .-|.-+|.||... |. .+.+|.++
T Consensus 153 i~---l~Gk~vvViGrS~iVGkPla~lL~~~-----~A----------tVtichs~------------------------ 190 (282)
T PRK14182 153 VD---PKGKRALVVGRSNIVGKPMAMMLLER-----HA----------TVTIAHSR------------------------ 190 (282)
T ss_pred CC---CCCCEEEEECCCCcchHHHHHHHHHC-----CC----------EEEEeCCC------------------------
Confidence 98 999999999986 5688888777652 42 35555542
Q ss_pred cccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHH
Q 040403 409 SRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEA 448 (623)
Q Consensus 409 ~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 448 (623)
..+|.+.++ ++|++|-..|.++.+++++|+.
T Consensus 191 -------T~nl~~~~~--~ADIvI~AvGk~~~i~~~~ik~ 221 (282)
T PRK14182 191 -------TADLAGEVG--RADILVAAIGKAELVKGAWVKE 221 (282)
T ss_pred -------CCCHHHHHh--hCCEEEEecCCcCccCHHHcCC
Confidence 123667777 8999999999999999998873
No 153
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=84.23 E-value=7.6 Score=41.93 Aligned_cols=109 Identities=23% Similarity=0.230 Sum_probs=74.2
Q ss_pred CCccccCcc---hhHHHHHHHHHHHHH------------------HhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHH
Q 040403 303 YRMFNDDVQ---GTAGVAVAGLLGAVR------------------AQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMA 361 (623)
Q Consensus 303 ~~~FNDDiQ---GTaaV~lAgll~A~r------------------~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~ 361 (623)
+.|+|-.-- ..|=-+++.+|+..| ..|.. |.++++-|+|.|..|..+|+.+...
T Consensus 90 i~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~e---l~gkTvGIiG~G~IG~~va~~l~af-- 164 (324)
T COG0111 90 ILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTE---LAGKTVGIIGLGRIGRAVAKRLKAF-- 164 (324)
T ss_pred CEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCcccccccccc---ccCCEEEEECCCHHHHHHHHHHHhC--
Confidence 444444432 234447788888777 45556 8999999999999999999999885
Q ss_pred HhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEecc----CC
Q 040403 362 RMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLS----AV 437 (623)
Q Consensus 362 ~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S----~~ 437 (623)
|+ ++..+|+. ..+ +.+.. .. .....+|.+.++ +.|++.-.- ..
T Consensus 165 ---gm----------~v~~~d~~----~~~--------~~~~~-~~-----~~~~~~Ld~lL~--~sDiv~lh~PlT~eT 211 (324)
T COG0111 165 ---GM----------KVIGYDPY----SPR--------ERAGV-DG-----VVGVDSLDELLA--EADILTLHLPLTPET 211 (324)
T ss_pred ---CC----------eEEEECCC----Cch--------hhhcc-cc-----ceecccHHHHHh--hCCEEEEcCCCCcch
Confidence 86 47778873 111 11100 01 223467999999 899988532 23
Q ss_pred CCCCCHHHHHHc
Q 040403 438 GGLFSKEVLEAM 449 (623)
Q Consensus 438 ~g~Ft~evv~~M 449 (623)
-|.++++-+..|
T Consensus 212 ~g~i~~~~~a~M 223 (324)
T COG0111 212 RGLINAEELAKM 223 (324)
T ss_pred hcccCHHHHhhC
Confidence 488999999999
No 154
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.17 E-value=4.4 Score=43.26 Aligned_cols=131 Identities=18% Similarity=0.203 Sum_probs=85.2
Q ss_pred HHHHHHHHHhC--Cc---eeeecccCCCchHHHHHHHHh--ccCCccccCc--------chhHHHHHHHHHHHHHHhCCC
Q 040403 267 DEFMEAIFTRW--PN---VIVQFEDFQSKWAFKLLQRYR--YKYRMFNDDV--------QGTAGVAVAGLLGAVRAQGRS 331 (623)
Q Consensus 267 defv~av~~~~--P~---~lIqfEDf~~~nAf~lL~ryr--~~~~~FNDDi--------QGTaaV~lAgll~A~r~~g~~ 331 (623)
+||.+.+.++- ++ .++|+==...-+..++++.-. +.+=.||..- .+-.-+|-.|++.=++-.|.+
T Consensus 73 ~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~avi~lL~~~~i~ 152 (287)
T PRK14173 73 EELLELIARLNADPEVDGILVQLPLPPHIDFQRVLEAIDPLKDVDGFHPLNVGRLWMGGEALEPCTPAGVVRLLKHYGIP 152 (287)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCccccccccChhhhHHHhcCCCCCCCCCHHHHHHHHHHcCCC
Confidence 56777777664 43 367754222223334444322 1122222211 123456778888888888998
Q ss_pred CCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcc
Q 040403 332 MIDFPKQKIVVAGAG-SAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISR 410 (623)
Q Consensus 332 ~~~l~d~riv~~GAG-sAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~ 410 (623)
++..++||+|.+ ..|.-+|.||... |. .+.+|.|+
T Consensus 153 ---l~Gk~vvViGrS~iVGkPla~lL~~~-----~a----------TVtichs~-------------------------- 188 (287)
T PRK14173 153 ---LAGKEVVVVGRSNIVGKPLAALLLRE-----DA----------TVTLAHSK-------------------------- 188 (287)
T ss_pred ---CCCCEEEEECCCCccHHHHHHHHHHC-----CC----------EEEEeCCC--------------------------
Confidence 999999999985 6788888888652 53 35556542
Q ss_pred cccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHH
Q 040403 411 QGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEA 448 (623)
Q Consensus 411 ~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 448 (623)
..+|.+.++ ++|++|-+.|.++.++.++|+.
T Consensus 189 -----T~~l~~~~~--~ADIvIsAvGkp~~i~~~~vk~ 219 (287)
T PRK14173 189 -----TQDLPAVTR--RADVLVVAVGRPHLITPEMVRP 219 (287)
T ss_pred -----CCCHHHHHh--hCCEEEEecCCcCccCHHHcCC
Confidence 124777778 8999999999999999988873
No 155
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.93 E-value=15 Score=39.45 Aligned_cols=135 Identities=16% Similarity=0.191 Sum_probs=87.9
Q ss_pred HHHHHHHHHhC--Cc---eeeecccCCCchHHHHHHHHh--ccCCccccCc--------chhHHHHHHHHHHHHHHhCCC
Q 040403 267 DEFMEAIFTRW--PN---VIVQFEDFQSKWAFKLLQRYR--YKYRMFNDDV--------QGTAGVAVAGLLGAVRAQGRS 331 (623)
Q Consensus 267 defv~av~~~~--P~---~lIqfEDf~~~nAf~lL~ryr--~~~~~FNDDi--------QGTaaV~lAgll~A~r~~g~~ 331 (623)
+||.+.+.++- |+ .++|+==.+.-+..++++... +.+=.||..- .+-.-+|-.|++.=++..+.+
T Consensus 75 ~el~~~I~~lN~D~~V~GIlvq~PLP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~PcTp~avi~lL~~~~i~ 154 (297)
T PRK14167 75 EELYDTIDELNADEDVHGILVQMPVPDHVDDREVLRRIDPAKDVDGFHPENVGRLVAGDARFKPCTPHGIQKLLAAAGVD 154 (297)
T ss_pred HHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcccCcccCChhhhHHHhCCCCCCCCCCHHHHHHHHHHhCCC
Confidence 56777777774 64 377764333334444544432 1222233221 223456788888888999998
Q ss_pred CCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcc
Q 040403 332 MIDFPKQKIVVAGAG-SAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISR 410 (623)
Q Consensus 332 ~~~l~d~riv~~GAG-sAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~ 410 (623)
++.++++|+|.+ .-|.-+|.||... |... ...+.+|.++
T Consensus 155 ---l~Gk~vvViGrS~iVGkPla~lL~~~-----~~~~------~aTVtvchs~-------------------------- 194 (297)
T PRK14167 155 ---TEGADVVVVGRSDIVGKPMANLLIQK-----ADGG------NATVTVCHSR-------------------------- 194 (297)
T ss_pred ---CCCCEEEEECCCcccHHHHHHHHhcC-----ccCC------CCEEEEeCCC--------------------------
Confidence 999999999986 5688888887642 2110 1235555542
Q ss_pred cccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHH
Q 040403 411 QGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEA 448 (623)
Q Consensus 411 ~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 448 (623)
..+|.+.++ ++|++|-+.|.++.++.++|+.
T Consensus 195 -----T~~l~~~~~--~ADIvIsAvGkp~~i~~~~ik~ 225 (297)
T PRK14167 195 -----TDDLAAKTR--RADIVVAAAGVPELIDGSMLSE 225 (297)
T ss_pred -----CCCHHHHHh--hCCEEEEccCCcCccCHHHcCC
Confidence 124777778 8999999999999999988873
No 156
>PRK06153 hypothetical protein; Provisional
Probab=83.83 E-value=1.5 Score=48.61 Aligned_cols=104 Identities=12% Similarity=0.184 Sum_probs=60.0
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLW 414 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~ 414 (623)
|++.||+|+|+|..|--|+++|+.. |+ ++|.++|.+=+ . ..+|+..---|-. .++.. ...
T Consensus 174 L~~~~VaIVG~GG~GS~Va~~LAR~-----GV---------geI~LVD~D~V-e--~SNLnRQ~gaf~~--~DvGk-~~~ 233 (393)
T PRK06153 174 LEGQRIAIIGLGGTGSYILDLVAKT-----PV---------REIHLFDGDDF-L--QHNAFRSPGAASI--EELRE-APK 233 (393)
T ss_pred HhhCcEEEEcCCccHHHHHHHHHHc-----CC---------CEEEEECCCEe-c--ccccccccccCCH--hHcCC-cch
Confidence 8899999999999999999999885 85 67999999722 1 1233221100111 11000 001
Q ss_pred CCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEE-ecCCCC
Q 040403 415 EGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIF-AMSNPT 466 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIF-aLSNPt 466 (623)
...-+.+.+...+|.+ ...+..++++-+..+ .+-.+|| ++=|..
T Consensus 234 KVevaa~rl~~in~~I----~~~~~~I~~~n~~~L----~~~DiV~dcvDn~~ 278 (393)
T PRK06153 234 KVDYFKSRYSNMRRGI----VPHPEYIDEDNVDEL----DGFTFVFVCVDKGS 278 (393)
T ss_pred HHHHHHHHHHHhCCeE----EEEeecCCHHHHHHh----cCCCEEEEcCCCHH
Confidence 1223556666666654 234455687777766 4445665 344433
No 157
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=83.82 E-value=1.5 Score=40.28 Aligned_cols=34 Identities=26% Similarity=0.347 Sum_probs=26.6
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 339 KIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 339 riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
||+++|+ |-.|-.|++.+.+. .|+ +=...+|+++
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~----~~~---------~lv~~v~~~~ 36 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILES----PGF---------ELVGAVDRKP 36 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHS----TTE---------EEEEEEETTT
T ss_pred EEEEECCCCHHHHHHHHHHHhc----CCc---------EEEEEEecCC
Confidence 8999999 99999999888773 254 2366788876
No 158
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=83.81 E-value=0.55 Score=57.58 Aligned_cols=41 Identities=20% Similarity=0.325 Sum_probs=34.1
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
|++.||+++|+|.-|+-+++.|+.+ |+.- .-..+|.++|-+
T Consensus 417 L~~~kVlvvGaGGlG~e~lknLal~-----Gv~~----~~~G~i~IvD~D 457 (1008)
T TIGR01408 417 LQNLNIFLVGCGAIGCEMLKNFALM-----GVGT----GKKGMITVTDPD 457 (1008)
T ss_pred HhhCcEEEECCChHHHHHHHHHHHh-----CCCc----CCCCeEEEECCC
Confidence 7889999999999999999999886 8731 114789999986
No 159
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=83.79 E-value=3.3 Score=44.55 Aligned_cols=119 Identities=18% Similarity=0.203 Sum_probs=74.5
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCc---ccCCCCCCChhhHHhHHHhhhhcccccC
Q 040403 339 KIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGL---ITEDRENIDPDAKPFARKVNEISRQGLW 414 (623)
Q Consensus 339 riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GL---i~~~r~~l~~~~~~fA~~~~~~~~~~~~ 414 (623)
||.|.|| |..|..+|..|+.. |+-. |+-...+.|+|.+.- .....-||.+..-++.+. ..
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~-----~~~~---~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~--------~~ 65 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASG-----ELFG---DDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKG--------VV 65 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhC-----CccC---CCCceEEEEEecCCccCccceeeeehhhhcccccCC--------cE
Confidence 7999999 99999999877653 6532 223347999998742 111112343332222210 01
Q ss_pred CCCCHHHHHhhcCCcEEEeccCCC---CC-----------CCHHHHHHcccCCC-CCCEEEecCCCCCCCCCCHHHHhcc
Q 040403 415 EGASLVEVVQQVKPDVLLGLSAVG---GL-----------FSKEVLEAMRGSTS-TRPAIFAMSNPTNNAECTPEEAFSI 479 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLIG~S~~~---g~-----------Ft~evv~~M~a~~~-erPIIFaLSNPt~~~E~tpeda~~w 479 (623)
-..+..++++ +.|++|=+.|.+ |- .-+++++.| .+++ +.-||+-.|||- .+..--++++
T Consensus 66 i~~~~~~~~~--~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i-~~~~~~~~iiivvsNPv---D~~t~~~~k~ 139 (323)
T cd00704 66 ITTDPEEAFK--DVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEAL-NKVAKPTVKVLVVGNPA---NTNALIALKN 139 (323)
T ss_pred EecChHHHhC--CCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHH-HHhCCCCeEEEEeCCcH---HHHHHHHHHH
Confidence 1245778888 889888555543 32 126778888 7884 999999999998 5555556665
No 160
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=83.78 E-value=43 Score=34.91 Aligned_cols=32 Identities=34% Similarity=0.708 Sum_probs=27.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.+|.|+|+|..|.+||..++.+ | .+++++|.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~-----G----------~~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA-----G----------MDVWLLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-----C----------CeEEEEeCC
Confidence 4799999999999999998875 7 358888874
No 161
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.66 E-value=4.7 Score=42.94 Aligned_cols=130 Identities=15% Similarity=0.159 Sum_probs=88.6
Q ss_pred HHHHHHHHHhC--Cc---eeeecc---cCCCchHHHHHHHHhcc--CC------ccccCcchhHHHHHHHHHHHHHHhCC
Q 040403 267 DEFMEAIFTRW--PN---VIVQFE---DFQSKWAFKLLQRYRYK--YR------MFNDDVQGTAGVAVAGLLGAVRAQGR 330 (623)
Q Consensus 267 defv~av~~~~--P~---~lIqfE---Df~~~nAf~lL~ryr~~--~~------~FNDDiQGTaaV~lAgll~A~r~~g~ 330 (623)
+||.+.+.++- |+ .++|+= ++.....++.++-.+|- ++ .|..|..+-.-+|-.|++.=++-.|.
T Consensus 75 ~el~~~I~~lN~D~~V~GIivq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~~PcTp~aii~lL~~y~i 154 (282)
T PRK14180 75 SELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFHPTNVGRLQLRDKKCLESCTPKGIMTMLREYGI 154 (282)
T ss_pred HHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhhcCccccccccChhhHHHHhcCCCCCcCCCCHHHHHHHHHHhCC
Confidence 67777777774 55 377753 55444444444444431 11 22222234456788888888999999
Q ss_pred CCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhc
Q 040403 331 SMIDFPKQKIVVAGAG-SAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEIS 409 (623)
Q Consensus 331 ~~~~l~d~riv~~GAG-sAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~ 409 (623)
+ |++.++||+|.+ ..|.-+|.||... |. .+.+|+++
T Consensus 155 ~---l~Gk~vvViGrS~~VGkPla~lL~~~-----~A----------TVt~chs~------------------------- 191 (282)
T PRK14180 155 K---TEGAYAVVVGASNVVGKPVSQLLLNA-----KA----------TVTTCHRF------------------------- 191 (282)
T ss_pred C---CCCCEEEEECCCCcchHHHHHHHHHC-----CC----------EEEEEcCC-------------------------
Confidence 8 999999999986 5788888888642 53 45566553
Q ss_pred ccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHH
Q 040403 410 RQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLE 447 (623)
Q Consensus 410 ~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 447 (623)
..+|.+.++ ++|++|-..|.++.|++++|+
T Consensus 192 ------T~dl~~~~k--~ADIvIsAvGkp~~i~~~~vk 221 (282)
T PRK14180 192 ------TTDLKSHTT--KADILIVAVGKPNFITADMVK 221 (282)
T ss_pred ------CCCHHHHhh--hcCEEEEccCCcCcCCHHHcC
Confidence 123666667 899999999999999998887
No 162
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=83.64 E-value=1.7 Score=48.72 Aligned_cols=135 Identities=19% Similarity=0.216 Sum_probs=78.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHh-cCCCcchhhhccCeEEEEccCCcccCCCCC-CChhhHHhHHHhhhhcccccCC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARM-LGNNESAFDSARSQFWVVDAKGLITEDREN-IDPDAKPFARKVNEISRQGLWE 415 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~-~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~-l~~~~~~fA~~~~~~~~~~~~~ 415 (623)
.||+|+||||+ -.-.|+..+.+. ..++. ..|+|+|.+. +|-+ +...-+.+++... .+|.-..
T Consensus 1 ~KI~iIGaGS~---~tp~li~~l~~~~~~l~~-------~ei~L~DId~----~rl~~v~~l~~~~~~~~g--~~~~v~~ 64 (437)
T cd05298 1 FKIVIAGGGST---YTPGIVKSLLDRKEDFPL-------RELVLYDIDA----ERQEKVAEAVKILFKENY--PEIKFVY 64 (437)
T ss_pred CeEEEECCcHH---HHHHHHHHHHhCcccCCC-------CEEEEECCCH----HHHHHHHHHHHHHHHhhC--CCeEEEE
Confidence 48999999996 444555544432 23443 7899999752 2211 1111222222110 1222344
Q ss_pred CCCHHHHHhhcCCcEEE---------------------ecc-----CCCCCC--------CHHHHHHcccCCCCCCEEEe
Q 040403 416 GASLVEVVQQVKPDVLL---------------------GLS-----AVGGLF--------SKEVLEAMRGSTSTRPAIFA 461 (623)
Q Consensus 416 ~~~L~e~V~~vkptvLI---------------------G~S-----~~~g~F--------t~evv~~M~a~~~erPIIFa 461 (623)
..++.||++ ++|.+| |+- |.||.| -.++++.| .+.|+.-+++-
T Consensus 65 Ttdr~eAl~--gADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i-~~~~pda~lin 141 (437)
T cd05298 65 TTDPEEAFT--DADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDI-EKYSPDAWILN 141 (437)
T ss_pred ECCHHHHhC--CCCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHH-HHHCCCeEEEE
Confidence 678999999 888877 221 223322 25788889 89999999999
Q ss_pred cCCCCCCCCCCHHHHhcccCCcEEEecCCCCC
Q 040403 462 MSNPTNNAECTPEEAFSIVGDNIIFASGSPFK 493 (623)
Q Consensus 462 LSNPt~~~E~tpeda~~wT~Grai~AtGsPF~ 493 (623)
.|||. ..+|-.---.++.-|+|=-+-+|+.
T Consensus 142 ~tNP~--~~vt~~~~~~~~~~kviGlC~~~~~ 171 (437)
T cd05298 142 YSNPA--AIVAEALRRLFPNARILNICDMPIA 171 (437)
T ss_pred ecCcH--HHHHHHHHHHCCCCCEEEECCcHHH
Confidence 99998 3444322112344566555555554
No 163
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=83.54 E-value=2.8 Score=43.22 Aligned_cols=105 Identities=10% Similarity=0.034 Sum_probs=57.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGAS 418 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~ 418 (623)
||.|+|+|+.|..+|..|... | .+++++++ +--.+. +.......-....+. ........+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~-----g----------~~V~~~~r-~~~~~~---~~~~g~~~~~~~~~~-~~~~~~~~~ 61 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA-----G----------RDVTFLVR-PKRAKA---LRERGLVIRSDHGDA-VVPGPVITD 61 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC-----C----------CceEEEec-HHHHHH---HHhCCeEEEeCCCeE-EecceeecC
Confidence 799999999999999888764 6 35777776 210000 000000000000000 000011234
Q ss_pred HHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCC
Q 040403 419 LVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTN 467 (623)
Q Consensus 419 L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~ 467 (623)
+.++++ .+|++|=+.. ....+++++.++....++.+|+.+.|.-.
T Consensus 62 ~~~~~~--~~d~vilavk--~~~~~~~~~~l~~~~~~~~~ii~~~nG~~ 106 (305)
T PRK12921 62 PEELTG--PFDLVILAVK--AYQLDAAIPDLKPLVGEDTVIIPLQNGIG 106 (305)
T ss_pred HHHccC--CCCEEEEEec--ccCHHHHHHHHHhhcCCCCEEEEeeCCCC
Confidence 556555 6776664332 23468999988433456678888999863
No 164
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=83.50 E-value=5.8 Score=41.59 Aligned_cols=95 Identities=18% Similarity=0.229 Sum_probs=58.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGAS 418 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~ 418 (623)
||.|+|.|..|..+|..|... | .+++++|+.. +..+.++. . +.....+
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~-----g----------~~v~v~dr~~----------~~~~~~~~---~----g~~~~~~ 49 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRG-----G----------HEVVGYDRNP----------EAVEALAE---E----GATGADS 49 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHC-----C----------CeEEEEECCH----------HHHHHHHH---C----CCeecCC
Confidence 799999999999999999774 6 2477777741 11122321 1 0123456
Q ss_pred HHHHHhhc-CCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCC
Q 040403 419 LVEVVQQV-KPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPT 466 (623)
Q Consensus 419 L~e~V~~v-kptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt 466 (623)
+.|+++.. +|+++|=+- ..+...++++..+.....+..||+-+|+-.
T Consensus 50 ~~e~~~~~~~~dvvi~~v-~~~~~~~~v~~~l~~~l~~g~ivid~st~~ 97 (301)
T PRK09599 50 LEELVAKLPAPRVVWLMV-PAGEITDATIDELAPLLSPGDIVIDGGNSY 97 (301)
T ss_pred HHHHHhhcCCCCEEEEEe-cCCcHHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence 88888755 377665333 234355666665523335677888887643
No 165
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=83.21 E-value=6.6 Score=40.31 Aligned_cols=103 Identities=17% Similarity=0.229 Sum_probs=55.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGAS 418 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~ 418 (623)
||.|+|+|+.|..+|..|... | .+++++|+++=-.+ .+......+ . ..+.. .......+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~-----g----------~~V~~~~r~~~~~~---~~~~~g~~~-~-~~~~~-~~~~~~~~ 60 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA-----G----------HDVTLVARRGAHLD---ALNENGLRL-E-DGEIT-VPVLAADD 60 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C----------CeEEEEECChHHHH---HHHHcCCcc-c-CCcee-ecccCCCC
Confidence 799999999999999888764 6 35788887421000 000000000 0 00000 00011234
Q ss_pred HHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCC
Q 040403 419 LVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTN 467 (623)
Q Consensus 419 L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~ 467 (623)
+.++ + ++|++| ++.. .--++++++.++....++-+|+.+.|.-.
T Consensus 61 ~~~~-~--~~d~vi-la~k-~~~~~~~~~~l~~~l~~~~~iv~~~nG~~ 104 (304)
T PRK06522 61 PAEL-G--PQDLVI-LAVK-AYQLPAALPSLAPLLGPDTPVLFLQNGVG 104 (304)
T ss_pred hhHc-C--CCCEEE-Eecc-cccHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 5554 4 778777 4422 23468999998333445557777999753
No 166
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=83.19 E-value=2.3 Score=45.64 Aligned_cols=104 Identities=18% Similarity=0.234 Sum_probs=67.2
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCC
Q 040403 339 KIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGA 417 (623)
Q Consensus 339 riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~ 417 (623)
||.|+|| |..|..+|-.|... |+ ...+.|+|.+ +.....-||.+.. .+. .... .....
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~-----~~--------~~elvLiDi~-~a~g~alDL~~~~-~~~----~i~~--~~~~~ 60 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLN-----PL--------VSELALYDIV-NTPGVAADLSHIN-TPA----KVTG--YLGPE 60 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhC-----CC--------CcEEEEEecC-ccceeehHhHhCC-Ccc----eEEE--ecCCC
Confidence 8999999 99999998877542 65 2579999998 3221112344332 110 1100 00123
Q ss_pred CHHHHHhhcCCcEEEeccCCC---CC-----------CCHHHHHHcccCCCCCCEEEecCCCC
Q 040403 418 SLVEVVQQVKPDVLLGLSAVG---GL-----------FSKEVLEAMRGSTSTRPAIFAMSNPT 466 (623)
Q Consensus 418 ~L~e~V~~vkptvLIG~S~~~---g~-----------Ft~evv~~M~a~~~erPIIFaLSNPt 466 (623)
++.+.++ ..|++|=++|.+ |- .-+++++.+ .++++..+|+-.|||.
T Consensus 61 ~~y~~~~--daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i-~~~~p~a~vivvtNPv 120 (310)
T cd01337 61 ELKKALK--GADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAV-AKACPKALILIISNPV 120 (310)
T ss_pred chHHhcC--CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHhCCCeEEEEccCch
Confidence 4677788 899888555543 32 225677777 7889999999999998
No 167
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=83.08 E-value=6.2 Score=41.41 Aligned_cols=95 Identities=18% Similarity=0.242 Sum_probs=58.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGAS 418 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~ 418 (623)
+|.|+|.|..|..+|..+... |. +++++|++. +....++. . +.....+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~-----g~----------~v~v~dr~~----------~~~~~~~~---~----g~~~~~s 49 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRED-----GH----------EVVGYDVNQ----------EAVDVAGK---L----GITARHS 49 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhC-----CC----------EEEEEECCH----------HHHHHHHH---C----CCeecCC
Confidence 699999999999999988763 63 467777631 11122221 1 0223457
Q ss_pred HHHHHhhcC-CcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCC
Q 040403 419 LVEVVQQVK-PDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPT 466 (623)
Q Consensus 419 L~e~V~~vk-ptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt 466 (623)
+.|+++..+ ++++|=+- ......+++++.+.....+..+|.=+|+-.
T Consensus 50 ~~~~~~~~~~advVi~~v-p~~~~~~~v~~~i~~~l~~g~ivid~st~~ 97 (299)
T PRK12490 50 LEELVSKLEAPRTIWVMV-PAGEVTESVIKDLYPLLSPGDIVVDGGNSR 97 (299)
T ss_pred HHHHHHhCCCCCEEEEEe-cCchHHHHHHHHHhccCCCCCEEEECCCCC
Confidence 888887543 56665332 233366777766633345677888887744
No 168
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=83.06 E-value=7.1 Score=41.87 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=41.6
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCc-chHHHHHHHHHHH
Q 040403 311 QGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGA-GSAGLGVLNAARK 358 (623)
Q Consensus 311 QGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GA-GsAg~GIA~ll~~ 358 (623)
-+||-++.-+++.+...+|.. |++..+-|+|| |..|.+||+.|..
T Consensus 144 s~Tayaa~r~Vl~~~~~lGid---lsqatvaivGa~G~Ia~~Iar~la~ 189 (351)
T COG5322 144 SHTAYAACRQVLKHFAQLGID---LSQATVAIVGATGDIASAIARWLAP 189 (351)
T ss_pred ccchHHHHHHHHHHHHHhCcC---HHHCeEEEecCCchHHHHHHHHhcc
Confidence 378999999999999999999 99999999998 9999999999875
No 169
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=82.91 E-value=5.8 Score=42.61 Aligned_cols=133 Identities=16% Similarity=0.175 Sum_probs=79.6
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcc--cCC-CCCCChhhHHhHHHhhhhccccc
Q 040403 338 QKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLI--TED-RENIDPDAKPFARKVNEISRQGL 413 (623)
Q Consensus 338 ~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi--~~~-r~~l~~~~~~fA~~~~~~~~~~~ 413 (623)
-||+|.|| |.-|..+|..|+.. |+-. .+....++++|.+.-. ..+ .-++.+..-++-. + .
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~-----~~~~---~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~---~-----~ 66 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKG-----DVFG---PDQPVILHLLDIPPALKALEGVVMELQDCAFPLLK---S-----V 66 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhC-----cccC---CCCCcEEEEEEcCCccccccceeeehhhccccccC---C-----c
Confidence 37999999 99999999887763 5420 0112379999985421 111 1122221111110 1 1
Q ss_pred CCCCCHHHHHhhcCCcEEEeccCCCCC--CC------------HHHHHHcccCCC-CCCEEEecCCCCCCCCCCHHHHhc
Q 040403 414 WEGASLVEVVQQVKPDVLLGLSAVGGL--FS------------KEVLEAMRGSTS-TRPAIFAMSNPTNNAECTPEEAFS 478 (623)
Q Consensus 414 ~~~~~L~e~V~~vkptvLIG~S~~~g~--Ft------------~evv~~M~a~~~-erPIIFaLSNPt~~~E~tpeda~~ 478 (623)
....++.++++ ++|++|=+.+.+.. .| +++++.| .+++ ..-||+-.|||. ....--+++
T Consensus 67 ~~~~~~~~~l~--~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i-~~~~~~~~iiivvsNPv---D~~t~~~~k 140 (325)
T cd01336 67 VATTDPEEAFK--DVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEAL-DKYAKKNVKVLVVGNPA---NTNALILLK 140 (325)
T ss_pred eecCCHHHHhC--CCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHH-HHhCCCCeEEEEecCcH---HHHHHHHHH
Confidence 12357888898 89999866655422 33 5677788 7775 688999999997 666666677
Q ss_pred ccCC--cEEEecCCCC
Q 040403 479 IVGD--NIIFASGSPF 492 (623)
Q Consensus 479 wT~G--rai~AtGsPF 492 (623)
++.| +-.|.||+-.
T Consensus 141 ~~~~~~~~~ig~gt~L 156 (325)
T cd01336 141 YAPSIPKENFTALTRL 156 (325)
T ss_pred HcCCCCHHHEEeeehH
Confidence 6422 1225555433
No 170
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=82.85 E-value=1.4 Score=47.55 Aligned_cols=105 Identities=15% Similarity=0.272 Sum_probs=62.9
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCCh-------------hhHHh
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDP-------------DAKPF 401 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~-------------~~~~f 401 (623)
|++.+|+|+|+|..|..+|+.|+.+ |+ ++|.++|.+=+ .. .+|.. .|..-
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~a-----Gv---------g~i~lvD~D~v-e~--sNL~RQ~l~~~~d~~~g~~Ka~a 84 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVRA-----GI---------GKLTIADRDYV-EW--SNLQRQQLYTEEDAKQKKPKAIA 84 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHc-----CC---------CEEEEEcCCcc-cc--cccCccccccHHHccCCccHHHH
Confidence 8899999999999999999999886 95 67999999732 11 11211 11111
Q ss_pred HHHh-hhhccc-c---c--C-CCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEe
Q 040403 402 ARKV-NEISRQ-G---L--W-EGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFA 461 (623)
Q Consensus 402 A~~~-~~~~~~-~---~--~-~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFa 461 (623)
|+.. .+..++ . . . ...++.+.++ +.|++|-++. ..-+..++..+ +.....|.|++
T Consensus 85 a~~~l~~inp~v~i~~~~~~~~~~~~~~~~~--~~DlVid~~D--~~~~r~~in~~-~~~~~ip~i~~ 147 (338)
T PRK12475 85 AKEHLRKINSEVEIVPVVTDVTVEELEELVK--EVDLIIDATD--NFDTRLLINDL-SQKYNIPWIYG 147 (338)
T ss_pred HHHHHHHHCCCcEEEEEeccCCHHHHHHHhc--CCCEEEEcCC--CHHHHHHHHHH-HHHcCCCEEEE
Confidence 1110 011010 0 0 0 1134666776 6788887763 22245556666 66677888875
No 171
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=82.82 E-value=4.8 Score=44.32 Aligned_cols=85 Identities=9% Similarity=0.171 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCC
Q 040403 313 TAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAG-SAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDR 391 (623)
Q Consensus 313 TaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAG-sAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r 391 (623)
-.-+|-.|++.=++..+.+ ++.+++||+|-+ .-|.-+|.||... |. .+.+|.++
T Consensus 210 f~PCTp~avielL~~y~i~---l~GK~vvVIGRS~iVGkPLa~LL~~~-----~A----------TVTicHs~------- 264 (364)
T PLN02616 210 FVPCTPKGCIELLHRYNVE---IKGKRAVVIGRSNIVGMPAALLLQRE-----DA----------TVSIVHSR------- 264 (364)
T ss_pred CCCCCHHHHHHHHHHhCCC---CCCCEEEEECCCccccHHHHHHHHHC-----CC----------eEEEeCCC-------
Confidence 3456677788888889998 999999999985 5677888777652 53 35566543
Q ss_pred CCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHH
Q 040403 392 ENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEA 448 (623)
Q Consensus 392 ~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 448 (623)
..+|.+.++ ++|++|-..|.++.++.++|+.
T Consensus 265 ------------------------T~nl~~~~r--~ADIVIsAvGkp~~i~~d~vK~ 295 (364)
T PLN02616 265 ------------------------TKNPEEITR--EADIIISAVGQPNMVRGSWIKP 295 (364)
T ss_pred ------------------------CCCHHHHHh--hCCEEEEcCCCcCcCCHHHcCC
Confidence 124777778 8999999999999999998873
No 172
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=82.73 E-value=13 Score=40.79 Aligned_cols=131 Identities=15% Similarity=0.122 Sum_probs=85.8
Q ss_pred HHHHHHHHHhC--Cc---eeeecccCCCchHHHHHHHHhc--cCCc---------cc-cCcchhHHHHHHHHHHHHHHhC
Q 040403 267 DEFMEAIFTRW--PN---VIVQFEDFQSKWAFKLLQRYRY--KYRM---------FN-DDVQGTAGVAVAGLLGAVRAQG 329 (623)
Q Consensus 267 defv~av~~~~--P~---~lIqfEDf~~~nAf~lL~ryr~--~~~~---------FN-DDiQGTaaV~lAgll~A~r~~g 329 (623)
+|+.+.+.+.- |+ .++|+==.+.-+..++++...- .+=. |. ++..+-.-+|-.|++.=++-.|
T Consensus 130 ~ell~~I~~lN~D~~V~GIlVQlPLP~hid~~~i~~~I~p~KDVDGl~p~N~G~L~~~~~~~~~~PCTp~avi~LL~~~~ 209 (345)
T PLN02897 130 GQILSALRKFNEDTSIHGILVQLPLPQHLDESKILNMVRLEKDVDGFHPLNVGNLAMRGREPLFVSCTPKGCVELLIRSG 209 (345)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCccCCCHHHHHHHhcCCCCCCCcCCCHHHHHHHHHHhC
Confidence 56777777764 54 3777543333344444443321 1111 11 2123445667788888888899
Q ss_pred CCCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhh
Q 040403 330 RSMIDFPKQKIVVAGAG-SAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEI 408 (623)
Q Consensus 330 ~~~~~l~d~riv~~GAG-sAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~ 408 (623)
.+ ++++++||+|-+ ..|.-+|.||... |. .+.+|.++
T Consensus 210 i~---l~GK~vvVIGRS~iVGkPla~LL~~~-----~A----------TVTicHs~------------------------ 247 (345)
T PLN02897 210 VE---IAGKNAVVIGRSNIVGLPMSLLLQRH-----DA----------TVSTVHAF------------------------ 247 (345)
T ss_pred CC---CCCCEEEEECCCccccHHHHHHHHHC-----CC----------EEEEEcCC------------------------
Confidence 98 999999999975 5677787777652 53 34555543
Q ss_pred cccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHH
Q 040403 409 SRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEA 448 (623)
Q Consensus 409 ~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 448 (623)
..+|.+.++ ++|++|-..|.++.|+.++|+.
T Consensus 248 -------T~nl~~~~~--~ADIvIsAvGkp~~v~~d~vk~ 278 (345)
T PLN02897 248 -------TKDPEQITR--KADIVIAAAGIPNLVRGSWLKP 278 (345)
T ss_pred -------CCCHHHHHh--hCCEEEEccCCcCccCHHHcCC
Confidence 123667777 8999999999999999998874
No 173
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=82.65 E-value=1.6 Score=44.85 Aligned_cols=36 Identities=14% Similarity=0.318 Sum_probs=32.7
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
|++.||+|+|+|..|.-+|..|+.+ |+ ++|.++|.+
T Consensus 22 L~~~~VlvvG~GglGs~va~~La~~-----Gv---------g~i~lvD~D 57 (240)
T TIGR02355 22 LKASRVLIVGLGGLGCAASQYLAAA-----GV---------GNLTLLDFD 57 (240)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHc-----CC---------CEEEEEeCC
Confidence 7889999999999999999999885 95 789999997
No 174
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=82.57 E-value=1.7 Score=43.91 Aligned_cols=36 Identities=22% Similarity=0.383 Sum_probs=32.9
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
|++.||+|+|+|..|.-||+.|+.+ |+ ++|.++|.+
T Consensus 19 L~~~~VlivG~GglGs~va~~La~~-----Gv---------g~i~lvD~D 54 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAA-----GV---------GKLGLVDDD 54 (228)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHc-----CC---------CEEEEEcCC
Confidence 7889999999999999999999886 95 789999987
No 175
>PRK06436 glycerate dehydrogenase; Provisional
Probab=82.43 E-value=11 Score=40.25 Aligned_cols=89 Identities=16% Similarity=0.204 Sum_probs=63.2
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLW 414 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~ 414 (623)
|.++++.|+|-|..|..+|+++... |+ +++.+|+... . .+. ..
T Consensus 120 L~gktvgIiG~G~IG~~vA~~l~af-----G~----------~V~~~~r~~~--~--~~~------------------~~ 162 (303)
T PRK06436 120 LYNKSLGILGYGGIGRRVALLAKAF-----GM----------NIYAYTRSYV--N--DGI------------------SS 162 (303)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHC-----CC----------EEEEECCCCc--c--cCc------------------cc
Confidence 9999999999999999999876543 74 5778887521 0 000 01
Q ss_pred CCCCHHHHHhhcCCcEEEecc----CCCCCCCHHHHHHcccCCCCCCEEEecCCCC
Q 040403 415 EGASLVEVVQQVKPDVLLGLS----AVGGLFSKEVLEAMRGSTSTRPAIFAMSNPT 466 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLIG~S----~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt 466 (623)
...+|.|+++ +.|+++=+- ..-+.|+++.++.| .+..++.=.|.=.
T Consensus 163 ~~~~l~ell~--~aDiv~~~lp~t~~T~~li~~~~l~~m----k~ga~lIN~sRG~ 212 (303)
T PRK06436 163 IYMEPEDIMK--KSDFVLISLPLTDETRGMINSKMLSLF----RKGLAIINVARAD 212 (303)
T ss_pred ccCCHHHHHh--hCCEEEECCCCCchhhcCcCHHHHhcC----CCCeEEEECCCcc
Confidence 1246889888 788887432 12478999999999 6677888777644
No 176
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=82.38 E-value=13 Score=41.16 Aligned_cols=41 Identities=5% Similarity=0.011 Sum_probs=30.5
Q ss_pred HHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCc
Q 040403 321 LLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNE 368 (623)
Q Consensus 321 ll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~ 368 (623)
+..++.-..+. |++.|++|+|.+.-.+++++.|.+. .|+..
T Consensus 277 ~~~~l~~~~~~---l~Gkrvai~g~~~~~~~la~~L~ee----lGm~~ 317 (427)
T PRK02842 277 ARKALEPYREL---LRGKRVFFLPDSQLEIPLARFLSRE----CGMEL 317 (427)
T ss_pred HHHHHHHhhhh---cCCcEEEEECCchhHHHHHHHHHHh----CCCEE
Confidence 33445555556 8889999999998899999998873 38743
No 177
>PRK08291 ectoine utilization protein EutC; Validated
Probab=82.37 E-value=18 Score=38.82 Aligned_cols=107 Identities=19% Similarity=0.197 Sum_probs=60.7
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhh-hhcccccC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVN-EISRQGLW 414 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~-~~~~~~~~ 414 (623)
..++++|+|+|..|..++..+... .++ +++.++++. .+.-+.|++.-. .+ +....
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~----~~~---------~~V~v~~R~----------~~~a~~l~~~~~~~~-g~~v~ 186 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLV----RPI---------REVRVWARD----------AAKAEAYAADLRAEL-GIPVT 186 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc----CCC---------CEEEEEcCC----------HHHHHHHHHHHhhcc-CceEE
Confidence 347999999999987777666542 143 568888773 122234443211 10 00011
Q ss_pred CCCCHHHHHhhcCCcEEEeccCC-CCCCCHHHHHHcccCCCCCCEEEec-CCCCCCCCCCHHH
Q 040403 415 EGASLVEVVQQVKPDVLLGLSAV-GGLFSKEVLEAMRGSTSTRPAIFAM-SNPTNNAECTPEE 475 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLIG~S~~-~g~Ft~evv~~M~a~~~erPIIFaL-SNPt~~~E~tped 475 (623)
...++.++++ +.|++|-++.. .-.|+.+.++.- . -|.++ |+-..+-|+.|+-
T Consensus 187 ~~~d~~~al~--~aDiVi~aT~s~~p~i~~~~l~~g--~-----~v~~vg~d~~~~rEld~~~ 240 (330)
T PRK08291 187 VARDVHEAVA--GADIIVTTTPSEEPILKAEWLHPG--L-----HVTAMGSDAEHKNEIAPAV 240 (330)
T ss_pred EeCCHHHHHc--cCCEEEEeeCCCCcEecHHHcCCC--c-----eEEeeCCCCCCcccCCHHH
Confidence 2467899998 78999876543 345666665532 1 23333 3333346888765
No 178
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=82.12 E-value=1.1 Score=50.41 Aligned_cols=132 Identities=22% Similarity=0.261 Sum_probs=83.2
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCC-CChhhHHhHHHhhhhcccccC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDREN-IDPDAKPFARKVNEISRQGLW 414 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~-l~~~~~~fA~~~~~~~~~~~~ 414 (623)
+..||+|+||||. .-.++|...+.+...++. ..|||+|-+ .+|.+ +...-+.+.+... .++.-.
T Consensus 2 ~~~KI~iIGgGSt--~tp~~v~g~l~~~e~l~~-------~el~L~Did----~~r~~~i~~~~~~~v~~~g--~~~kv~ 66 (442)
T COG1486 2 KKFKIVIIGGGST--YTPKLLLGDLARTEELPV-------RELALYDID----EERLKIIAILAKKLVEEAG--APVKVE 66 (442)
T ss_pred CcceEEEECCCcc--ccHHHHHHHHhcCccCCc-------ceEEEEeCC----HHHHHHHHHHHHHHHHhhC--CCeEEE
Confidence 3579999999998 467778777766546665 789999974 22321 1111122322111 112123
Q ss_pred CCCCHHHHHhhcCCcEEE---------------------ec-----cCCCCCCC--------HHHHHHcccCCCCCCEEE
Q 040403 415 EGASLVEVVQQVKPDVLL---------------------GL-----SAVGGLFS--------KEVLEAMRGSTSTRPAIF 460 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLI---------------------G~-----S~~~g~Ft--------~evv~~M~a~~~erPIIF 460 (623)
...++.+|++ ++|-.| |+ -|.||.|. -|+++.| .+.|+.--++
T Consensus 67 ~ttd~~eAl~--gAdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m-~~~~P~Aw~l 143 (442)
T COG1486 67 ATTDRREALE--GADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDM-EKVCPNAWML 143 (442)
T ss_pred EecCHHHHhc--CCCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHH-HHhCCCceEE
Confidence 4678999999 888777 11 22333332 4888999 8899999999
Q ss_pred ecCCCCCCCCCCHHHHhcccCC-cEEEec
Q 040403 461 AMSNPTNNAECTPEEAFSIVGD-NIIFAS 488 (623)
Q Consensus 461 aLSNPt~~~E~tpeda~~wT~G-rai~At 488 (623)
=.+||- +++| |-.++|+.. |.|=-+
T Consensus 144 NytNP~--~~vT-eAv~r~~~~~K~VGlC 169 (442)
T COG1486 144 NYTNPA--AIVT-EAVRRLYPKIKIVGLC 169 (442)
T ss_pred eccChH--HHHH-HHHHHhCCCCcEEeeC
Confidence 999998 6766 345666544 444333
No 179
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=82.12 E-value=1.7 Score=51.10 Aligned_cols=78 Identities=15% Similarity=0.166 Sum_probs=49.6
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLW 414 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~ 414 (623)
|++.||+|+|||.-|.-+|+.|+.+ |+ ++|.+||.+-+=.. +|.. |.-|-. .+...-+.+
T Consensus 336 L~~~kVLIvGaGGLGs~VA~~La~~-----GV---------g~ItlVD~D~Ve~S---NL~R-Q~Lf~~--~Dv~~~Gk~ 395 (664)
T TIGR01381 336 YSQLKVLLLGAGTLGCNVARCLIGW-----GV---------RHITFVDNGKVSYS---NPVR-QSLSNF--EDCLLGGRG 395 (664)
T ss_pred HhcCeEEEECCcHHHHHHHHHHHHc-----CC---------CeEEEEcCCEECCC---cccc-ccccch--hhhhhcCCc
Confidence 7899999999999999999999986 96 78999998633222 2221 212211 111000012
Q ss_pred CCCCHHHHHhhcCCcEEE
Q 040403 415 EGASLVEVVQQVKPDVLL 432 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLI 432 (623)
......+.++.+.|+|=|
T Consensus 396 KA~aAa~~Lk~InP~v~i 413 (664)
T TIGR01381 396 KAETAQKALKRIFPSIQA 413 (664)
T ss_pred HHHHHHHHHHHHCCCcEE
Confidence 233467777777787765
No 180
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.06 E-value=1.1 Score=51.02 Aligned_cols=36 Identities=33% Similarity=0.451 Sum_probs=28.4
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCe
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQ 377 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~ 377 (623)
+.-+|+|+|||-||+..|++|.+. |... ..-|||.|
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~-----G~~V-~VLEARdR 49 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDF-----GFDV-LVLEARDR 49 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHc-----CCce-EEEeccCC
Confidence 456999999999999999999996 8643 23566654
No 181
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=81.85 E-value=1.5 Score=48.00 Aligned_cols=126 Identities=18% Similarity=0.307 Sum_probs=78.0
Q ss_pred HHHHhccCCc--cccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhh
Q 040403 296 LQRYRYKYRM--FNDDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDS 373 (623)
Q Consensus 296 L~ryr~~~~~--FNDDiQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~ee 373 (623)
++||..++.+ |.-+-| ++ |++.||+|+|+|..|.-+|..|+.+ |+
T Consensus 19 ~~ry~Rqi~l~~~g~~~q------------------~~---l~~~~VliiG~GglG~~v~~~La~~-----Gv------- 65 (370)
T PRK05600 19 LRRTARQLALPGFGIEQQ------------------ER---LHNARVLVIGAGGLGCPAMQSLASA-----GV------- 65 (370)
T ss_pred HHHhhcccchhhhCHHHH------------------HH---hcCCcEEEECCCHHHHHHHHHHHHc-----CC-------
Confidence 4688887666 443322 44 8899999999999999999999886 85
Q ss_pred ccCeEEEEccCCcccCC--C------CCCChhhHHhHHHh-hhhccc----ccC---CCCCHHHHHhhcCCcEEEeccCC
Q 040403 374 ARSQFWVVDAKGLITED--R------ENIDPDAKPFARKV-NEISRQ----GLW---EGASLVEVVQQVKPDVLLGLSAV 437 (623)
Q Consensus 374 A~~~i~lvD~~GLi~~~--r------~~l~~~~~~fA~~~-~~~~~~----~~~---~~~~L~e~V~~vkptvLIG~S~~ 437 (623)
++|.++|.+=+=..+ | .++...|..-+... ..+.++ ... ...++.+.++ +.|++|.++..
T Consensus 66 --g~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~--~~DlVid~~Dn 141 (370)
T PRK05600 66 --GTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRERLTAENAVELLN--GVDLVLDGSDS 141 (370)
T ss_pred --CEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeeeecCHHHHHHHHh--CCCEEEECCCC
Confidence 789999987321111 1 12222333332211 111111 011 1134566777 78999987743
Q ss_pred CCCCCHHHHHHcccCCCCCCEEEe
Q 040403 438 GGLFSKEVLEAMRGSTSTRPAIFA 461 (623)
Q Consensus 438 ~g~Ft~evv~~M~a~~~erPIIFa 461 (623)
.=++-.|..+ +.....|.|++
T Consensus 142 --~~~r~~in~~-~~~~~iP~v~~ 162 (370)
T PRK05600 142 --FATKFLVADA-AEITGTPLVWG 162 (370)
T ss_pred --HHHHHHHHHH-HHHcCCCEEEE
Confidence 2245667777 77778999987
No 182
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=81.84 E-value=13 Score=39.73 Aligned_cols=107 Identities=14% Similarity=0.145 Sum_probs=62.5
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEG 416 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~ 416 (623)
..+++|+|+|..|..++..+... .++ ++|+++++. .+..+.|++.-....+......
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~----~~i---------~~v~V~~R~----------~~~a~~~a~~~~~~~g~~v~~~ 185 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLV----RDI---------RSARIWARD----------SAKAEALALQLSSLLGIDVTAA 185 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHh----CCc---------cEEEEECCC----------HHHHHHHHHHHHhhcCceEEEe
Confidence 46999999999998888877643 143 578888873 1223445532111000001124
Q ss_pred CCHHHHHhhcCCcEEEeccCC-CCCCCHHHHHHcccCCCCCCEEEecCCCC-CCCCCCHHH
Q 040403 417 ASLVEVVQQVKPDVLLGLSAV-GGLFSKEVLEAMRGSTSTRPAIFAMSNPT-NNAECTPEE 475 (623)
Q Consensus 417 ~~L~e~V~~vkptvLIG~S~~-~g~Ft~evv~~M~a~~~erPIIFaLSNPt-~~~E~tped 475 (623)
.++.++++ +.|++|-+++. .-.|+.++++.- -.|.++..-+ .+-|+.++-
T Consensus 186 ~~~~~av~--~aDiVvtaT~s~~p~i~~~~l~~g-------~~i~~vg~~~p~~rEld~~~ 237 (326)
T TIGR02992 186 TDPRAAMS--GADIIVTTTPSETPILHAEWLEPG-------QHVTAMGSDAEHKNEIDPAV 237 (326)
T ss_pred CCHHHHhc--cCCEEEEecCCCCcEecHHHcCCC-------cEEEeeCCCCCCceecCHHH
Confidence 67899998 89999977543 245666665532 1344443322 246777765
No 183
>PLN03139 formate dehydrogenase; Provisional
Probab=81.79 E-value=52 Score=36.58 Aligned_cols=199 Identities=16% Similarity=0.124 Sum_probs=117.3
Q ss_pred HhCCce-eeecccCCCchHHHHHHHHhccCCccccCcc---hhHHHHHHHHHHHHHHh---------C--------CCCC
Q 040403 275 TRWPNV-IVQFEDFQSKWAFKLLQRYRYKYRMFNDDVQ---GTAGVAVAGLLGAVRAQ---------G--------RSMI 333 (623)
Q Consensus 275 ~~~P~~-lIqfEDf~~~nAf~lL~ryr~~~~~FNDDiQ---GTaaV~lAgll~A~r~~---------g--------~~~~ 333 (623)
...|+. +|+.--.+..| +.+-.--+..|++.|---- ..|=-+++-+|+.+|-. | ....
T Consensus 117 ~~ap~LK~I~~~g~G~D~-iDl~aa~~~gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~ 195 (386)
T PLN03139 117 KKAKNLELLLTAGIGSDH-IDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAY 195 (386)
T ss_pred hhCCCccEEEECCccccc-cCHHHHHHCCeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccCCCc
Confidence 345775 67766666555 3343333456888885322 23444788888877721 1 0112
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhccccc
Q 040403 334 DFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGL 413 (623)
Q Consensus 334 ~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~ 413 (623)
+|.+.+|.|+|.|..|..+|+.+... |+ +++.+|+... .. ..+.. .. .
T Consensus 196 ~L~gktVGIVG~G~IG~~vA~~L~af-----G~----------~V~~~d~~~~--------~~--~~~~~--~g-----~ 243 (386)
T PLN03139 196 DLEGKTVGTVGAGRIGRLLLQRLKPF-----NC----------NLLYHDRLKM--------DP--ELEKE--TG-----A 243 (386)
T ss_pred CCCCCEEEEEeecHHHHHHHHHHHHC-----CC----------EEEEECCCCc--------ch--hhHhh--cC-----c
Confidence 49999999999999999999999864 74 4677887532 00 01110 00 1
Q ss_pred CCCCCHHHHHhhcCCcEEEeccC----CCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHh-cc-cCCcEEEe
Q 040403 414 WEGASLVEVVQQVKPDVLLGLSA----VGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAF-SI-VGDNIIFA 487 (623)
Q Consensus 414 ~~~~~L~e~V~~vkptvLIG~S~----~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~-~w-T~Grai~A 487 (623)
....+|.|+++ +.|+++=..- .-+.|+++.+..| .+.-+++=.|. .++--|+|+ ++ ..|+.-.|
T Consensus 244 ~~~~~l~ell~--~sDvV~l~lPlt~~T~~li~~~~l~~m----k~ga~lIN~aR----G~iVDe~AL~~AL~sG~l~GA 313 (386)
T PLN03139 244 KFEEDLDAMLP--KCDVVVINTPLTEKTRGMFNKERIAKM----KKGVLIVNNAR----GAIMDTQAVADACSSGHIGGY 313 (386)
T ss_pred eecCCHHHHHh--hCCEEEEeCCCCHHHHHHhCHHHHhhC----CCCeEEEECCC----CchhhHHHHHHHHHcCCceEE
Confidence 12347999998 6888873321 2378999999999 56667776655 444444333 22 24666555
Q ss_pred cCCCCCccccCCCeeccCCCCccccchhHHH
Q 040403 488 SGSPFKDVDLGNGHIGHCNQGNNMYLFPGVG 518 (623)
Q Consensus 488 tGsPF~pv~~~~G~~~~p~Q~NN~yiFPGig 518 (623)
..-=|.+-..|... .--+..|+.+-|=++
T Consensus 314 aLDV~~~EPlp~d~--pL~~~pNvilTPHia 342 (386)
T PLN03139 314 GGDVWYPQPAPKDH--PWRYMPNHAMTPHIS 342 (386)
T ss_pred EEcCCCCCCCCCCC--hhhcCCCeEEccccc
Confidence 55434322221111 012345888888876
No 184
>PRK05442 malate dehydrogenase; Provisional
Probab=81.63 E-value=4 Score=43.98 Aligned_cols=121 Identities=15% Similarity=0.142 Sum_probs=72.4
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCc---ccCCCCCCChhhHHhHHHhhhhccccc
Q 040403 338 QKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGL---ITEDRENIDPDAKPFARKVNEISRQGL 413 (623)
Q Consensus 338 ~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GL---i~~~r~~l~~~~~~fA~~~~~~~~~~~ 413 (623)
.||.|+|| |..|..+|-.|+.. |+-. ..--..|.|+|.+.- +....-||.+...++-. . .
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~-----~~~~---~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~---~-----~ 68 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASG-----DMLG---KDQPVILQLLEIPPALKALEGVVMELDDCAFPLLA---G-----V 68 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhh-----hhcC---CCCccEEEEEecCCcccccceeehhhhhhhhhhcC---C-----c
Confidence 39999998 99999998877653 4310 000137999998532 11111234333323321 1 1
Q ss_pred CCCCCHHHHHhhcCCcEEEeccCC---CCC-----------CCHHHHHHcccCCC-CCCEEEecCCCCCCCCCCHHHHhc
Q 040403 414 WEGASLVEVVQQVKPDVLLGLSAV---GGL-----------FSKEVLEAMRGSTS-TRPAIFAMSNPTNNAECTPEEAFS 478 (623)
Q Consensus 414 ~~~~~L~e~V~~vkptvLIG~S~~---~g~-----------Ft~evv~~M~a~~~-erPIIFaLSNPt~~~E~tpeda~~ 478 (623)
.-..+..+.++ +.|++|=+.|. +|- .=+++++.+ .+++ ...||+-.|||- .+..--+++
T Consensus 69 ~i~~~~y~~~~--daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i-~~~~~~~~iiivvsNPv---Dv~t~v~~k 142 (326)
T PRK05442 69 VITDDPNVAFK--DADVALLVGARPRGPGMERKDLLEANGAIFTAQGKAL-NEVAARDVKVLVVGNPA---NTNALIAMK 142 (326)
T ss_pred EEecChHHHhC--CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHH-HHhCCCCeEEEEeCCch---HHHHHHHHH
Confidence 11235667777 89988844443 341 124566777 6756 699999999998 566666666
Q ss_pred cc
Q 040403 479 IV 480 (623)
Q Consensus 479 wT 480 (623)
++
T Consensus 143 ~s 144 (326)
T PRK05442 143 NA 144 (326)
T ss_pred Hc
Confidence 64
No 185
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=81.45 E-value=1.1 Score=50.60 Aligned_cols=38 Identities=29% Similarity=0.315 Sum_probs=28.6
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCe
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQ 377 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~ 377 (623)
..+.||||+|||.||++-|+.|++. |...-+.-||..|
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~-----gf~~~~IlEa~dR 56 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLEN-----GFIDVLILEASDR 56 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHh-----CCceEEEEEeccc
Confidence 4677999999999999999999953 6544333555554
No 186
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=81.18 E-value=3.6 Score=42.48 Aligned_cols=56 Identities=21% Similarity=0.281 Sum_probs=36.6
Q ss_pred CCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEc
Q 040403 303 YRMFNDDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVD 382 (623)
Q Consensus 303 ~~~FNDDiQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD 382 (623)
..-||-|-.| ++.+++-.+.. .+..+++|+|+|.+|..++..+.+. | .+++++|
T Consensus 94 l~g~NTD~~G--------~~~~l~~~~~~---~~~k~vliiGaGg~g~aia~~L~~~-----g----------~~v~v~~ 147 (270)
T TIGR00507 94 LVGYNTDGIG--------LVSDLERLIPL---RPNQRVLIIGAGGAARAVALPLLKA-----D----------CNVIIAN 147 (270)
T ss_pred EEEEcCCHHH--------HHHHHHhcCCC---ccCCEEEEEcCcHHHHHHHHHHHHC-----C----------CEEEEEe
Confidence 4455555443 44555543444 5678999999998887777766642 6 3688888
Q ss_pred cC
Q 040403 383 AK 384 (623)
Q Consensus 383 ~~ 384 (623)
+.
T Consensus 148 R~ 149 (270)
T TIGR00507 148 RT 149 (270)
T ss_pred CC
Confidence 63
No 187
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=80.70 E-value=4.9 Score=43.11 Aligned_cols=128 Identities=18% Similarity=0.241 Sum_probs=76.2
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCC
Q 040403 339 KIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGA 417 (623)
Q Consensus 339 riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~ 417 (623)
||.|+|| |.-|..+|-+|+.. |+ ...+.|+|.+. .....-||.+.. .. ..... .....
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~-----~~--------~~elvL~Di~~-a~g~a~DL~~~~----~~-~~i~~--~~~~~ 59 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQ-----PY--------VSELSLYDIAG-AAGVAADLSHIP----TA-ASVKG--FSGEE 59 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhC-----CC--------CcEEEEecCCC-CcEEEchhhcCC----cC-ceEEE--ecCCC
Confidence 6899999 99999999887652 54 25799999876 111112343322 00 01000 00112
Q ss_pred CHHHHHhhcCCcEEEeccCCC---CC-----------CCHHHHHHcccCCCCCCEEEecCCCCC-CCCCCHHHHhcccC-
Q 040403 418 SLVEVVQQVKPDVLLGLSAVG---GL-----------FSKEVLEAMRGSTSTRPAIFAMSNPTN-NAECTPEEAFSIVG- 481 (623)
Q Consensus 418 ~L~e~V~~vkptvLIG~S~~~---g~-----------Ft~evv~~M~a~~~erPIIFaLSNPt~-~~E~tpeda~~wT~- 481 (623)
++.++++ ..|++|=+.+.+ |- .=+++.+.+ .+++..-||+-.|||.. ++.+...-+++++.
T Consensus 60 ~~~~~~~--daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i-~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~ 136 (312)
T TIGR01772 60 GLENALK--GADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAV-AESCPKAMILVITNPVNSTVPIAAEVLKKKGVY 136 (312)
T ss_pred chHHHcC--CCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHH-HHhCCCeEEEEecCchhhHHHHHHHHHHHhcCC
Confidence 4678888 899888555543 21 114667777 78899999999999982 12225555666531
Q ss_pred -CcEEEecCC
Q 040403 482 -DNIIFASGS 490 (623)
Q Consensus 482 -Grai~AtGs 490 (623)
=+-+|++|.
T Consensus 137 p~~rViG~g~ 146 (312)
T TIGR01772 137 DPNKLFGVTT 146 (312)
T ss_pred ChHHEEeeec
Confidence 012555554
No 188
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=80.49 E-value=35 Score=35.91 Aligned_cols=97 Identities=20% Similarity=0.254 Sum_probs=50.9
Q ss_pred HHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHh
Q 040403 322 LGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPF 401 (623)
Q Consensus 322 l~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~f 401 (623)
+.|++..+.. .+++++|.|+|+.|...+.+... .|. ++++.+|+. +.+..+
T Consensus 159 ~~al~~~~~~----~g~~VlV~G~G~vG~~aiqlak~-----~G~---------~~Vi~~~~~-----------~~~~~~ 209 (343)
T PRK09880 159 IHAAHQAGDL----QGKRVFVSGVGPIGCLIVAAVKT-----LGA---------AEIVCADVS-----------PRSLSL 209 (343)
T ss_pred HHHHHhcCCC----CCCEEEEECCCHHHHHHHHHHHH-----cCC---------cEEEEEeCC-----------HHHHHH
Confidence 4555544433 57899999998777665544433 273 467777763 344555
Q ss_pred HHHhhhhcccccCCCCCHHHHHhhc-CCcEEEeccCCCCCCCHHHHHHc
Q 040403 402 ARKVNEISRQGLWEGASLVEVVQQV-KPDVLLGLSAVGGLFSKEVLEAM 449 (623)
Q Consensus 402 A~~~~~~~~~~~~~~~~L~e~V~~v-kptvLIG~S~~~g~Ft~evv~~M 449 (623)
|+.- ....--.....++.+.++.- +.|++|=+++.+.. -++.++.|
T Consensus 210 a~~l-Ga~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~~~-~~~~~~~l 256 (343)
T PRK09880 210 AREM-GADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHPSS-INTCLEVT 256 (343)
T ss_pred HHHc-CCcEEecCCcccHHHHhccCCCCCEEEECCCCHHH-HHHHHHHh
Confidence 5421 00000001112355544432 36888887754322 24555655
No 189
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=80.27 E-value=2.8 Score=39.81 Aligned_cols=31 Identities=23% Similarity=0.548 Sum_probs=25.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+|||+|+|.||+..|..|... | .++.++|+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~-----~----------~~v~ii~~~ 31 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP-----G----------AKVLIIEKS 31 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-----T----------SEEEEESSS
T ss_pred CEEEEecHHHHHHHHHHHhcC-----C----------CeEEEEecc
Confidence 699999999999999999842 5 468888664
No 190
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.11 E-value=7.8 Score=41.60 Aligned_cols=85 Identities=16% Similarity=0.263 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCC
Q 040403 313 TAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAG-SAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDR 391 (623)
Q Consensus 313 TaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAG-sAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r 391 (623)
-.-+|-.|++.=++-.|.+ ++++++||+|.+ ..|.-+|.||... |. .+.+|.|+
T Consensus 137 ~~PcTp~aii~lL~~~~i~---l~Gk~vvVIGrS~iVGkPla~lL~~~-----~a----------tVtv~hs~------- 191 (297)
T PRK14186 137 LRSCTPAGVMRLLRSQQID---IAGKKAVVVGRSILVGKPLALMLLAA-----NA----------TVTIAHSR------- 191 (297)
T ss_pred CCCCCHHHHHHHHHHhCCC---CCCCEEEEECCCccchHHHHHHHHHC-----CC----------EEEEeCCC-------
Confidence 3456778888888888998 999999999986 5688888887652 53 35555442
Q ss_pred CCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHH
Q 040403 392 ENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEA 448 (623)
Q Consensus 392 ~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 448 (623)
..+|.+.++ ++|++|-+.|.++.|+.++|+.
T Consensus 192 ------------------------T~~l~~~~~--~ADIvIsAvGkp~~i~~~~ik~ 222 (297)
T PRK14186 192 ------------------------TQDLASITR--EADILVAAAGRPNLIGAEMVKP 222 (297)
T ss_pred ------------------------CCCHHHHHh--hCCEEEEccCCcCccCHHHcCC
Confidence 124777777 8999999999999999998873
No 191
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=80.01 E-value=29 Score=35.49 Aligned_cols=47 Identities=30% Similarity=0.481 Sum_probs=28.9
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEcc
Q 040403 319 AGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDA 383 (623)
Q Consensus 319 Agll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~ 383 (623)
+..+.+++..+. ..+.+++|+|+|+.|.-.+.+... .|. ++|+.+|+
T Consensus 107 ~ta~~al~~~~~----~~g~~VlV~G~G~vG~~~~~~ak~-----~G~---------~~Vi~~~~ 153 (280)
T TIGR03366 107 ATVMAALEAAGD----LKGRRVLVVGAGMLGLTAAAAAAA-----AGA---------ARVVAADP 153 (280)
T ss_pred HHHHHHHHhccC----CCCCEEEEECCCHHHHHHHHHHHH-----cCC---------CEEEEECC
Confidence 334556655543 367899999998776555444332 374 45777765
No 192
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=79.94 E-value=2.4 Score=41.39 Aligned_cols=32 Identities=28% Similarity=0.430 Sum_probs=28.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
||+++|+|..|..||..|+.. |+ ++|.++|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~-----Gv---------g~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-----GV---------GNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-----CC---------CeEEEEeCC
Confidence 689999999999999999875 85 679999987
No 193
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=79.80 E-value=3.9 Score=46.14 Aligned_cols=90 Identities=14% Similarity=0.211 Sum_probs=61.0
Q ss_pred HHHHHHHHhCCceeeecccCCCchHHHHHHHHhcc-CC--ccccCcchhHHHHHHHHHHHHHHh-CC----CCCCCCCce
Q 040403 268 EFMEAIFTRWPNVIVQFEDFQSKWAFKLLQRYRYK-YR--MFNDDVQGTAGVAVAGLLGAVRAQ-GR----SMIDFPKQK 339 (623)
Q Consensus 268 efv~av~~~~P~~lIqfEDf~~~nAf~lL~ryr~~-~~--~FNDDiQGTaaV~lAgll~A~r~~-g~----~~~~l~d~r 339 (623)
+..+-+....|++-..+ +....-.++.++|.-. .| .+|++..+.|....+-+++.++.. +. +...-.+.+
T Consensus 137 ~~~~~~a~~~p~i~~~~--id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d 214 (515)
T TIGR03140 137 QALNQMALLNPNISHTM--IDGALFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEETAGVEAASALEQLDPYD 214 (515)
T ss_pred HHHHHHHHhCCCceEEE--EEchhCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhccCcccchhccccCCCC
Confidence 33444555567654333 5556667788999764 44 458888888888888888777644 11 101135688
Q ss_pred EEEeCcchHHHHHHHHHHHH
Q 040403 340 IVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 340 iv~~GAGsAg~GIA~ll~~~ 359 (623)
+||+|||+||+..|..+...
T Consensus 215 VvIIGgGpAGl~AA~~la~~ 234 (515)
T TIGR03140 215 VLVVGGGPAGAAAAIYAARK 234 (515)
T ss_pred EEEECCCHHHHHHHHHHHHC
Confidence 99999999999998887663
No 194
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=79.75 E-value=2.2 Score=42.44 Aligned_cols=37 Identities=22% Similarity=0.361 Sum_probs=33.3
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
|++.||+|+|+|.-|.-+|+.|+.+ |+ ++|.++|.+=
T Consensus 17 L~~s~VlviG~gglGsevak~L~~~-----GV---------g~i~lvD~d~ 53 (198)
T cd01485 17 LRSAKVLIIGAGALGAEIAKNLVLA-----GI---------DSITIVDHRL 53 (198)
T ss_pred HhhCcEEEECCCHHHHHHHHHHHHc-----CC---------CEEEEEECCc
Confidence 7889999999999999999999886 96 7799999873
No 195
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=79.67 E-value=2.6 Score=43.37 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=32.9
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
|++.||+|+|+|.-|.-+|..|+.+ |+ ++|.++|.+
T Consensus 30 L~~~~VliiG~GglGs~va~~La~~-----Gv---------g~i~lvD~D 65 (245)
T PRK05690 30 LKAARVLVVGLGGLGCAASQYLAAA-----GV---------GTLTLVDFD 65 (245)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHc-----CC---------CEEEEEcCC
Confidence 8899999999999999999999886 95 789999997
No 196
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=79.31 E-value=3.9 Score=46.17 Aligned_cols=47 Identities=17% Similarity=0.451 Sum_probs=35.8
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEcc
Q 040403 319 AGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDA 383 (623)
Q Consensus 319 Agll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~ 383 (623)
.|++.+++-.|.+ +++.+++|+|+|.+|.+++..+... |. +++++|+
T Consensus 317 ~G~~~~l~~~~~~---~~~k~vlIiGaGgiG~aia~~L~~~-----G~----------~V~i~~R 363 (477)
T PRK09310 317 EGLFSLLKQKNIP---LNNQHVAIVGAGGAAKAIATTLARA-----GA----------ELLIFNR 363 (477)
T ss_pred HHHHHHHHhcCCC---cCCCEEEEEcCcHHHHHHHHHHHHC-----CC----------EEEEEeC
Confidence 3567888877777 8999999999997777777666653 72 5777776
No 197
>PRK06487 glycerate dehydrogenase; Provisional
Probab=79.28 E-value=44 Score=35.76 Aligned_cols=191 Identities=16% Similarity=0.139 Sum_probs=108.8
Q ss_pred ccCCccccCc---chhHHHHHHHHHHHHHHh---------CC------------CCCCCCCceEEEeCcchHHHHHHHHH
Q 040403 301 YKYRMFNDDV---QGTAGVAVAGLLGAVRAQ---------GR------------SMIDFPKQKIVVAGAGSAGLGVLNAA 356 (623)
Q Consensus 301 ~~~~~FNDDi---QGTaaV~lAgll~A~r~~---------g~------------~~~~l~d~riv~~GAGsAg~GIA~ll 356 (623)
..+.+.|--- +.+|=-+++.+|+..|-. |+ ....|.++++.|+|.|..|-.||+++
T Consensus 88 ~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l 167 (317)
T PRK06487 88 RGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLA 167 (317)
T ss_pred CCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHH
Confidence 3466666322 345555788888776632 10 01238999999999999999999998
Q ss_pred HHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEec--
Q 040403 357 RKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGL-- 434 (623)
Q Consensus 357 ~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~-- 434 (623)
... |+ +|+.+|+.+- .. . ....+|.|+++ +.|+++=.
T Consensus 168 ~~f-----gm----------~V~~~~~~~~-----~~-------~------------~~~~~l~ell~--~sDiv~l~lP 206 (317)
T PRK06487 168 EAF-----GM----------RVLIGQLPGR-----PA-------R------------PDRLPLDELLP--QVDALTLHCP 206 (317)
T ss_pred hhC-----CC----------EEEEECCCCC-----cc-------c------------ccccCHHHHHH--hCCEEEECCC
Confidence 754 75 4666776420 00 0 01236999998 78988832
Q ss_pred --cCCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHh--cccCCcEEEecCCCCCccccCCCeeccCCCCcc
Q 040403 435 --SAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAF--SIVGDNIIFASGSPFKDVDLGNGHIGHCNQGNN 510 (623)
Q Consensus 435 --S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~--~wT~Grai~AtGsPF~pv~~~~G~~~~p~Q~NN 510 (623)
...-|.|+++.+..| .+..++.=.|. .++--|+|+ +-.+|+.--|.=-=|.+-..+.+..+.--+..|
T Consensus 207 lt~~T~~li~~~~~~~m----k~ga~lIN~aR----G~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pn 278 (317)
T PRK06487 207 LTEHTRHLIGARELALM----KPGALLINTAR----GGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPR 278 (317)
T ss_pred CChHHhcCcCHHHHhcC----CCCeEEEECCC----ccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCC
Confidence 223589999999999 56677776655 444444433 223466554422222111111111111003568
Q ss_pred ccchhHHHHHHHHcCCcccCHHHHHHHHHHHHccc
Q 040403 511 MYLFPGVGLGTLLSGSRIISDGMLQAAAECLAEYM 545 (623)
Q Consensus 511 ~yiFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v 545 (623)
+++-|=+|-.. ..-...|...+++.|.+..
T Consensus 279 vilTPHia~~t-----~e~~~~~~~~~~~ni~~~~ 308 (317)
T PRK06487 279 LIVTPHSAWGS-----REARQRIVGQLAENARAFF 308 (317)
T ss_pred EEECCccccCC-----HHHHHHHHHHHHHHHHHHH
Confidence 99999887222 2223344555555555444
No 198
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=79.27 E-value=2.7 Score=38.91 Aligned_cols=32 Identities=16% Similarity=0.387 Sum_probs=28.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
||+++|+|.-|.-+|+.|+.. |+ ++|.++|.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-----Gv---------~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-----GV---------GKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC---------CEEEEEcCC
Confidence 689999999999999999885 85 789999987
No 199
>PLN02306 hydroxypyruvate reductase
Probab=79.13 E-value=27 Score=38.66 Aligned_cols=185 Identities=19% Similarity=0.170 Sum_probs=98.6
Q ss_pred ccCCccccC-c--chhHHHHHHHHHHHHHHh---------CC---------CCCCCCCceEEEeCcchHHHHHHHHHHHH
Q 040403 301 YKYRMFNDD-V--QGTAGVAVAGLLGAVRAQ---------GR---------SMIDFPKQKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 301 ~~~~~FNDD-i--QGTaaV~lAgll~A~r~~---------g~---------~~~~l~d~riv~~GAGsAg~GIA~ll~~~ 359 (623)
..+.+.|-- . ..+|=-+++-+|+.+|-. |. ....|.++++.|+|.|..|..+|+++..+
T Consensus 108 ~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~vA~~l~~~ 187 (386)
T PLN02306 108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG 187 (386)
T ss_pred CCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEECCCHHHHHHHHHHHhc
Confidence 356666642 1 233444677777766532 10 01138999999999999999999998643
Q ss_pred HHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhh--hcccccCCCCCHHHHHhhcCCcEEEec---
Q 040403 360 MARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNE--ISRQGLWEGASLVEVVQQVKPDVLLGL--- 434 (623)
Q Consensus 360 m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~--~~~~~~~~~~~L~e~V~~vkptvLIG~--- 434 (623)
.|+ +++.+|+..- .++..+...+...-.. ..........+|.|+++ +.|+++-.
T Consensus 188 ----fGm----------~V~~~d~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~--~sDiV~lh~Pl 246 (386)
T PLN02306 188 ----FKM----------NLIYYDLYQS-----TRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLR--EADVISLHPVL 246 (386)
T ss_pred ----CCC----------EEEEECCCCc-----hhhhhhhhhhcccccccccccccccccCCHHHHHh--hCCEEEEeCCC
Confidence 264 5788887421 0011100111000000 00000011347999999 89999873
Q ss_pred -cCCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHh-cc-cCCcEEEecCC-CCCccccCCCeeccCCCCcc
Q 040403 435 -SAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAF-SI-VGDNIIFASGS-PFKDVDLGNGHIGHCNQGNN 510 (623)
Q Consensus 435 -S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~-~w-T~Grai~AtGs-PF~pv~~~~G~~~~p~Q~NN 510 (623)
...-|.|+++.++.| .+.-++.=.|. -++-=|+|+ ++ ..|+. .+.|. =|.+-..++. .--+..|
T Consensus 247 t~~T~~lin~~~l~~M----K~ga~lIN~aR----G~lVDe~AL~~AL~sg~i-~gAaLDVf~~EP~~~~---~L~~~pN 314 (386)
T PLN02306 247 DKTTYHLINKERLALM----KKEAVLVNASR----GPVIDEVALVEHLKANPM-FRVGLDVFEDEPYMKP---GLADMKN 314 (386)
T ss_pred ChhhhhhcCHHHHHhC----CCCeEEEECCC----ccccCHHHHHHHHHhCCe-eEEEEeCCCCCCCCcc---hHhhCCC
Confidence 223589999999999 55666665554 444444433 22 13553 33321 0110001111 1124568
Q ss_pred ccchhHHH
Q 040403 511 MYLFPGVG 518 (623)
Q Consensus 511 ~yiFPGig 518 (623)
+.+-|=+|
T Consensus 315 VilTPHia 322 (386)
T PLN02306 315 AVVVPHIA 322 (386)
T ss_pred EEECCccc
Confidence 88888776
No 200
>PLN02688 pyrroline-5-carboxylate reductase
Probab=79.05 E-value=9 Score=39.01 Aligned_cols=95 Identities=21% Similarity=0.259 Sum_probs=55.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCC-CcchhhhccCeEEEE-ccCCcccCCCCCCChhhHHhHHHhhhhcccccCCC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGN-NESAFDSARSQFWVV-DAKGLITEDRENIDPDAKPFARKVNEISRQGLWEG 416 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gl-s~~~~eeA~~~i~lv-D~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~ 416 (623)
||.|+|.|.-|..||+.|+.. |. .+ .+|+++ |+. .+..+.+.. .. ....
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~-----g~~~~-------~~i~v~~~r~----------~~~~~~~~~--~g-----~~~~ 52 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVAS-----GVVPP-------SRISTADDSN----------PARRDVFQS--LG-----VKTA 52 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHC-----CCCCc-------ceEEEEeCCC----------HHHHHHHHH--cC-----CEEe
Confidence 689999999999999998764 63 22 468877 552 111122221 01 1233
Q ss_pred CCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCC
Q 040403 417 ASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPT 466 (623)
Q Consensus 417 ~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt 466 (623)
.+..|+++ +.|++| ++. +....+++++..+....+..+|..+++.+
T Consensus 53 ~~~~e~~~--~aDvVi-l~v-~~~~~~~vl~~l~~~~~~~~~iIs~~~g~ 98 (266)
T PLN02688 53 ASNTEVVK--SSDVII-LAV-KPQVVKDVLTELRPLLSKDKLLVSVAAGI 98 (266)
T ss_pred CChHHHHh--cCCEEE-EEE-CcHHHHHHHHHHHhhcCCCCEEEEecCCC
Confidence 56778887 667666 332 23346788776622234455666665554
No 201
>PRK07574 formate dehydrogenase; Provisional
Probab=78.80 E-value=27 Score=38.74 Aligned_cols=197 Identities=17% Similarity=0.155 Sum_probs=109.5
Q ss_pred CCce-eeecccCCCchHHHHHHHHhccCCccccCcc---hhHHHHHHHHHHHHHHh---------C--------CCCCCC
Q 040403 277 WPNV-IVQFEDFQSKWAFKLLQRYRYKYRMFNDDVQ---GTAGVAVAGLLGAVRAQ---------G--------RSMIDF 335 (623)
Q Consensus 277 ~P~~-lIqfEDf~~~nAf~lL~ryr~~~~~FNDDiQ---GTaaV~lAgll~A~r~~---------g--------~~~~~l 335 (623)
.|+. +|+.-=.+..| ..+-.--+..+.+.|-.-- ..|=-+++-+|+.+|-. | ....+|
T Consensus 112 ~p~LK~I~~~g~G~D~-id~~aa~~~gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L 190 (385)
T PRK07574 112 APNLKLAITAGIGSDH-VDLQAASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSRSYDL 190 (385)
T ss_pred CCCCcEEEECCccccc-ccHHHHHHCCcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccccccceec
Confidence 4553 45543333333 2222222234666664322 23334778888776622 1 011238
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWE 415 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~ 415 (623)
.+++|.|+|.|..|..||+.+... |+ +++.+|+... + ....+. .. ...
T Consensus 191 ~gktVGIvG~G~IG~~vA~~l~~f-----G~----------~V~~~dr~~~--------~---~~~~~~-~g-----~~~ 238 (385)
T PRK07574 191 EGMTVGIVGAGRIGLAVLRRLKPF-----DV----------KLHYTDRHRL--------P---EEVEQE-LG-----LTY 238 (385)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-----CC----------EEEEECCCCC--------c---hhhHhh-cC-----cee
Confidence 999999999999999999998864 75 4777887531 0 011110 01 112
Q ss_pred CCCHHHHHhhcCCcEEEeccC----CCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHh--cccCCcEEEecC
Q 040403 416 GASLVEVVQQVKPDVLLGLSA----VGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAF--SIVGDNIIFASG 489 (623)
Q Consensus 416 ~~~L~e~V~~vkptvLIG~S~----~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~--~wT~Grai~AtG 489 (623)
..+|.|+++ +.|+++=.-- .-+.|+++.+..| .+..++.=.|. .++.-++|+ +...|+.-.|..
T Consensus 239 ~~~l~ell~--~aDvV~l~lPlt~~T~~li~~~~l~~m----k~ga~lIN~aR----G~iVDe~AL~~AL~sG~i~GAaL 308 (385)
T PRK07574 239 HVSFDSLVS--VCDVVTIHCPLHPETEHLFDADVLSRM----KRGSYLVNTAR----GKIVDRDAVVRALESGHLAGYAG 308 (385)
T ss_pred cCCHHHHhh--cCCEEEEcCCCCHHHHHHhCHHHHhcC----CCCcEEEECCC----CchhhHHHHHHHHHhCCccEEEE
Confidence 357999998 7898874321 2388999999999 56678887666 444444433 222466555544
Q ss_pred CCCCccccCCCeeccCCCCccccchhHHH
Q 040403 490 SPFKDVDLGNGHIGHCNQGNNMYLFPGVG 518 (623)
Q Consensus 490 sPF~pv~~~~G~~~~p~Q~NN~yiFPGig 518 (623)
-=|.+-..+....+ -+..|+.+-|=++
T Consensus 309 DV~~~EPlp~d~pL--~~~pNvilTPHia 335 (385)
T PRK07574 309 DVWFPQPAPADHPW--RTMPRNGMTPHIS 335 (385)
T ss_pred ecCCCCCCCCCChH--HhCCCeEECCccc
Confidence 32322111111111 1334778888666
No 202
>PRK06932 glycerate dehydrogenase; Provisional
Probab=78.53 E-value=20 Score=38.39 Aligned_cols=138 Identities=17% Similarity=0.161 Sum_probs=81.8
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhccccc
Q 040403 334 DFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGL 413 (623)
Q Consensus 334 ~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~ 413 (623)
.|.++++.|+|-|..|-.+|+++... |+ +++.+|+..- . .. .
T Consensus 144 ~l~gktvgIiG~G~IG~~va~~l~~f-----g~----------~V~~~~~~~~--------~----~~-----~------ 185 (314)
T PRK06932 144 DVRGSTLGVFGKGCLGTEVGRLAQAL-----GM----------KVLYAEHKGA--------S----VC-----R------ 185 (314)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhcC-----CC----------EEEEECCCcc--------c----cc-----c------
Confidence 38999999999999999999988653 75 3555665310 0 00 0
Q ss_pred CCCCCHHHHHhhcCCcEEEec----cCCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHh--cccCCcEEEe
Q 040403 414 WEGASLVEVVQQVKPDVLLGL----SAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAF--SIVGDNIIFA 487 (623)
Q Consensus 414 ~~~~~L~e~V~~vkptvLIG~----S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~--~wT~Grai~A 487 (623)
....+|.|+++ +.|+++=. ...-|.|+++.+..| .+..++.=.|. .++-=|+|+ .-.+|+.--|
T Consensus 186 ~~~~~l~ell~--~sDiv~l~~Plt~~T~~li~~~~l~~m----k~ga~lIN~aR----G~~Vde~AL~~aL~~g~i~gA 255 (314)
T PRK06932 186 EGYTPFEEVLK--QADIVTLHCPLTETTQNLINAETLALM----KPTAFLINTGR----GPLVDEQALLDALENGKIAGA 255 (314)
T ss_pred cccCCHHHHHH--hCCEEEEcCCCChHHhcccCHHHHHhC----CCCeEEEECCC----ccccCHHHHHHHHHcCCccEE
Confidence 11346999999 78988842 223499999999999 56777776665 344444433 1224665444
Q ss_pred cCCCCCccccCCCeecc--CCCCccccchhHHHH
Q 040403 488 SGSPFKDVDLGNGHIGH--CNQGNNMYLFPGVGL 519 (623)
Q Consensus 488 tGsPF~pv~~~~G~~~~--p~Q~NN~yiFPGigl 519 (623)
.--=|.+-..+....+. --+..|+++-|=+|-
T Consensus 256 aLDV~~~EP~~~~~pl~~~~~~~pnvilTPHia~ 289 (314)
T PRK06932 256 ALDVLVKEPPEKDNPLIQAAKRLPNLLITPHIAW 289 (314)
T ss_pred EEecCCCCCCCCCChhhHhhcCCCCEEECCcccc
Confidence 32222111111010010 013568888887763
No 203
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=78.42 E-value=2.4 Score=45.09 Aligned_cols=36 Identities=19% Similarity=0.379 Sum_probs=33.1
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
|++.+|+++|+|..|.-||+.|+.+ |+ ++|.++|.+
T Consensus 17 L~~s~VLIvG~gGLG~EiaKnLala-----GV---------g~itI~D~d 52 (286)
T cd01491 17 LQKSNVLISGLGGLGVEIAKNLILA-----GV---------KSVTLHDTK 52 (286)
T ss_pred HhcCcEEEEcCCHHHHHHHHHHHHc-----CC---------CeEEEEcCC
Confidence 7788999999999999999999986 96 789999997
No 204
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.23 E-value=15 Score=40.25 Aligned_cols=35 Identities=26% Similarity=0.440 Sum_probs=28.6
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+++.+++|+|+|..|.++|+.+.+. | .++++.|.+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~-----G----------~~V~~~d~~ 37 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKL-----G----------ANVTVNDGK 37 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHC-----C----------CEEEEEcCC
Confidence 6788999999999999998887764 7 357888864
No 205
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=78.11 E-value=2.9 Score=44.15 Aligned_cols=124 Identities=20% Similarity=0.266 Sum_probs=72.9
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC-CcccCCCCCCChhhHHhHHHhhhhcccccCCCCC
Q 040403 340 IVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK-GLITEDRENIDPDAKPFARKVNEISRQGLWEGAS 418 (623)
Q Consensus 340 iv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~-GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~ 418 (623)
|.|+|||..|..+|-.|+.. |+. ..+.++|.+ .++..-..||.+....+. .. . .....+
T Consensus 1 i~iiGaG~VG~~~a~~l~~~-----~~~--------~el~l~D~~~~~~~g~~~DL~~~~~~~~-~~-~-----i~~~~~ 60 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAK-----GLA--------SELVLVDVNEEKAKGDALDLSHASAFLA-TG-T-----IVRGGD 60 (300)
T ss_pred CEEECCCHHHHHHHHHHHhc-----CCC--------CEEEEEeCCccHHHHHHHhHHHhccccC-CC-e-----EEECCC
Confidence 57999999999998766653 763 479999973 111111112322221110 00 0 011233
Q ss_pred HHHHHhhcCCcEEEeccCC---CCC-----------CCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhccc--CC
Q 040403 419 LVEVVQQVKPDVLLGLSAV---GGL-----------FSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIV--GD 482 (623)
Q Consensus 419 L~e~V~~vkptvLIG~S~~---~g~-----------Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT--~G 482 (623)
.+.++ +.|++|=+.+. +|- .=+++++.+ .++++.-+|+=.|||. ++...-+.+++ +-
T Consensus 61 -~~~l~--~aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i-~~~~p~~~viv~sNP~---d~~~~~~~~~sg~~~ 133 (300)
T cd00300 61 -YADAA--DADIVVITAGAPRKPGETRLDLINRNAPILRSVITNL-KKYGPDAIILVVSNPV---DILTYVAQKLSGLPK 133 (300)
T ss_pred -HHHhC--CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHhCCCeEEEEccChH---HHHHHHHHHHhCcCH
Confidence 45666 78888854443 231 114677778 7889999999999998 66666666663 12
Q ss_pred cEEEecCC
Q 040403 483 NIIFASGS 490 (623)
Q Consensus 483 rai~AtGs 490 (623)
+-+|++|.
T Consensus 134 ~kviG~gt 141 (300)
T cd00300 134 NRVIGSGT 141 (300)
T ss_pred HHEEecCC
Confidence 34666653
No 206
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=77.96 E-value=11 Score=40.08 Aligned_cols=126 Identities=19% Similarity=0.265 Sum_probs=73.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCC-CCCCChhhHHhHHHhhhhcccccCCCC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITED-RENIDPDAKPFARKVNEISRQGLWEGA 417 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~-r~~l~~~~~~fA~~~~~~~~~~~~~~~ 417 (623)
||.|+|+|..|..+|..+... |+ ...++++|++-=...+ -.++.+. .+|-. . . .-...
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~-----g~--------~~ev~l~D~~~~~~~g~a~dl~~~-~~~~~---~---~-~i~~~ 60 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLR-----GL--------ASEIVLVDINKAKAEGEAMDLAHG-TPFVK---P---V-RIYAG 60 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHc-----CC--------CCEEEEEECCchhhhhHHHHHHcc-ccccC---C---e-EEeeC
Confidence 799999999999998887763 75 2569999974100000 0011111 01100 0 0 00123
Q ss_pred CHHHHHhhcCCcEEEeccCCCCCC--------------CHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccC--
Q 040403 418 SLVEVVQQVKPDVLLGLSAVGGLF--------------SKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVG-- 481 (623)
Q Consensus 418 ~L~e~V~~vkptvLIG~S~~~g~F--------------t~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~-- 481 (623)
+. +.++ +.|+.|=+.+.+..- =+++++.+ .+++..-+|+-.+||. +....-+++.++
T Consensus 61 d~-~~l~--~aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l-~~~~~~giiiv~tNP~---d~~~~~~~~~sg~p 133 (308)
T cd05292 61 DY-ADCK--GADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQI-LKYAPDAILLVVTNPV---DVLTYVAYKLSGLP 133 (308)
T ss_pred CH-HHhC--CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHCCCeEEEEecCcH---HHHHHHHHHHHCcC
Confidence 34 4566 778777444433111 14677787 7788889999999997 777777777651
Q ss_pred CcEEEecCCCC
Q 040403 482 DNIIFASGSPF 492 (623)
Q Consensus 482 Grai~AtGsPF 492 (623)
-+-+|++|.-.
T Consensus 134 ~~~viG~gt~L 144 (308)
T cd05292 134 PNRVIGSGTVL 144 (308)
T ss_pred HHHeecccchh
Confidence 23467776544
No 207
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=77.81 E-value=10 Score=40.00 Aligned_cols=99 Identities=13% Similarity=0.179 Sum_probs=57.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhh---------
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEI--------- 408 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~--------- 408 (623)
.||.|+|+|..|..+|..+..+ | .+++++|+..- ...+.+.....
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~-----G----------~~V~~~~r~~~-----------~~~~~~~g~~~~~~~~~~~~ 56 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAA-----G----------ADVTLIGRARI-----------GDELRAHGLTLTDYRGRDVR 56 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----C----------CcEEEEecHHH-----------HHHHHhcCceeecCCCccee
Confidence 4799999999999999998875 7 35778887421 11111000000
Q ss_pred -cccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCC
Q 040403 409 -SRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTN 467 (623)
Q Consensus 409 -~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~ 467 (623)
.........++ ++++ ++|++|=+... -..+++++.++....+..+|..+.|...
T Consensus 57 ~~~~~~~~~~~~-~~~~--~~D~vil~vk~--~~~~~~~~~l~~~~~~~~iii~~~nG~~ 111 (341)
T PRK08229 57 VPPSAIAFSTDP-AALA--TADLVLVTVKS--AATADAAAALAGHARPGAVVVSFQNGVR 111 (341)
T ss_pred cccceeEeccCh-hhcc--CCCEEEEEecC--cchHHHHHHHHhhCCCCCEEEEeCCCCC
Confidence 00000011233 4555 68888754322 2348888888333456678888889764
No 208
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=77.77 E-value=12 Score=39.26 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=27.6
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
-.+|.|+|+|..|..+|..+... |.. .+++++|++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~-----g~~--------~~V~~~dr~ 40 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRL-----GLA--------GEIVGADRS 40 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhc-----CCC--------cEEEEEECC
Confidence 46899999999999999888764 641 368888874
No 209
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=77.76 E-value=7.9 Score=38.79 Aligned_cols=114 Identities=18% Similarity=0.264 Sum_probs=68.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCC-CChhhHHhHHHhhhhcccccCCCC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDREN-IDPDAKPFARKVNEISRQGLWEGA 417 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~-l~~~~~~fA~~~~~~~~~~~~~~~ 417 (623)
||+|+||||+-. ..++...+.+...++. ..|+|+|.+- .|-+ ....-+.+++... .+|.-....
T Consensus 1 KI~iIGaGS~~~--~~~l~~~l~~~~~l~~-------~ei~L~Did~----~RL~~~~~~~~~~~~~~~--~~~~v~~tt 65 (183)
T PF02056_consen 1 KITIIGAGSTYF--PLLLLGDLLRTEELSG-------SEIVLMDIDE----ERLEIVERLARRMVEEAG--ADLKVEATT 65 (183)
T ss_dssp EEEEETTTSCCH--HHHHHHHHHCTTTSTE-------EEEEEE-SCH----HHHHHHHHHHHHHHHHCT--TSSEEEEES
T ss_pred CEEEECCchHhh--HHHHHHHHhcCccCCC-------cEEEEEcCCH----HHHHHHHHHHHHHHHhcC--CCeEEEEeC
Confidence 799999999854 4455555544324543 6899999851 1100 1111222222111 122233468
Q ss_pred CHHHHHhhcCCcEEE---------------------eccC-------CCCCCC--------HHHHHHcccCCCCCCEEEe
Q 040403 418 SLVEVVQQVKPDVLL---------------------GLSA-------VGGLFS--------KEVLEAMRGSTSTRPAIFA 461 (623)
Q Consensus 418 ~L~e~V~~vkptvLI---------------------G~S~-------~~g~Ft--------~evv~~M~a~~~erPIIFa 461 (623)
++.||++ ++|.+| |+-+ .+|.|. .|+.+.| .+.|+.--||=
T Consensus 66 d~~eAl~--gADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i-~~~~PdAw~iN 142 (183)
T PF02056_consen 66 DRREALE--GADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDI-EELCPDAWLIN 142 (183)
T ss_dssp SHHHHHT--TESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHH-HHHTTTSEEEE
T ss_pred CHHHHhC--CCCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHH-HHhCCCcEEEe
Confidence 8999999 899888 3322 223332 5788999 88999999999
Q ss_pred cCCCCCCCCCC
Q 040403 462 MSNPTNNAECT 472 (623)
Q Consensus 462 LSNPt~~~E~t 472 (623)
.+||. +++|
T Consensus 143 ytNP~--~~vt 151 (183)
T PF02056_consen 143 YTNPM--GIVT 151 (183)
T ss_dssp -SSSH--HHHH
T ss_pred ccChH--HHHH
Confidence 99998 4544
No 210
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=77.63 E-value=19 Score=41.23 Aligned_cols=37 Identities=14% Similarity=-0.059 Sum_probs=29.6
Q ss_pred ccCCCCccccchhHHHHHHHHcCCcccCHHHHHHHHH
Q 040403 503 GHCNQGNNMYLFPGVGLGTLLSGSRIISDGMLQAAAE 539 (623)
Q Consensus 503 ~~p~Q~NN~yiFPGiglG~~~~~a~~Itd~m~~aAA~ 539 (623)
..||..+|-+.+|.+.-+..+...--++.+.+.++.+
T Consensus 185 d~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~ 221 (503)
T TIGR02279 185 STPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALR 221 (503)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3578899999999999888888776678787777654
No 211
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=77.33 E-value=89 Score=34.83 Aligned_cols=220 Identities=15% Similarity=0.176 Sum_probs=124.9
Q ss_pred HhCCce-eeecccCCCchHHHHHHHHhccCCccccCc---chhHHHHHHHHHHHHHHh---------CC------CCCCC
Q 040403 275 TRWPNV-IVQFEDFQSKWAFKLLQRYRYKYRMFNDDV---QGTAGVAVAGLLGAVRAQ---------GR------SMIDF 335 (623)
Q Consensus 275 ~~~P~~-lIqfEDf~~~nAf~lL~ryr~~~~~FNDDi---QGTaaV~lAgll~A~r~~---------g~------~~~~l 335 (623)
...|+. .|+.-=.+..| ..+..--+..++++|--- ..+|=-+++.+|+.+|-. |. ....|
T Consensus 71 ~~~~~Lk~I~~~~~G~d~-id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L 149 (409)
T PRK11790 71 AAAEKLVAIGCFCIGTNQ-VDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEV 149 (409)
T ss_pred hhCCCCeEEEECceeccc-ccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccC
Confidence 345664 56554444444 444333445699998532 234455788888887632 10 01238
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWE 415 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~ 415 (623)
.+.++.|+|-|..|..+|+.+... |+ +++.+|+.. .... .. ...
T Consensus 150 ~gktvGIiG~G~IG~~vA~~~~~f-----Gm----------~V~~~d~~~-----~~~~-----------~~-----~~~ 193 (409)
T PRK11790 150 RGKTLGIVGYGHIGTQLSVLAESL-----GM----------RVYFYDIED-----KLPL-----------GN-----ARQ 193 (409)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-----CC----------EEEEECCCc-----cccc-----------CC-----cee
Confidence 999999999999999999988764 75 577788631 0000 00 112
Q ss_pred CCCHHHHHhhcCCcEEEecc----CCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHh--cccCCcEEEecC
Q 040403 416 GASLVEVVQQVKPDVLLGLS----AVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAF--SIVGDNIIFASG 489 (623)
Q Consensus 416 ~~~L~e~V~~vkptvLIG~S----~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~--~wT~Grai~AtG 489 (623)
..+|.|+++ +.|+++=.- ..-+.|+++.+..| .+.-++.-.|. .++-=|+|+ +..+|+ |.+.|
T Consensus 194 ~~~l~ell~--~sDiVslh~Plt~~T~~li~~~~l~~m----k~ga~lIN~aR----G~~vde~aL~~aL~~g~-i~gaa 262 (409)
T PRK11790 194 VGSLEELLA--QSDVVSLHVPETPSTKNMIGAEELALM----KPGAILINASR----GTVVDIDALADALKSGH-LAGAA 262 (409)
T ss_pred cCCHHHHHh--hCCEEEEcCCCChHHhhccCHHHHhcC----CCCeEEEECCC----CcccCHHHHHHHHHcCC-ceEEE
Confidence 346999998 788887321 12378999999999 55667776665 344433333 122466 43333
Q ss_pred CC-CCccccCCC-e-eccCCCCccccchhHHHHHHHHcCCcccCHHHHHHHHHHHHcccCc
Q 040403 490 SP-FKDVDLGNG-H-IGHCNQGNNMYLFPGVGLGTLLSGSRIISDGMLQAAAECLAEYMTE 547 (623)
Q Consensus 490 sP-F~pv~~~~G-~-~~~p~Q~NN~yiFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v~~ 547 (623)
.- |++-..+.. . ...--+..|+++-|=+|-...- -...|...+++.+......
T Consensus 263 lDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~e-----a~~~~~~~~~~nl~~~~~~ 318 (409)
T PRK11790 263 IDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQE-----AQENIGLEVAGKLVKYSDN 318 (409)
T ss_pred EcCCCCCCCCccccccchhhcCCCEEECCcCCCCHHH-----HHHHHHHHHHHHHHHHHcC
Confidence 21 221111100 0 0011245689999988844322 2244555566666665543
No 212
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=77.29 E-value=3.1 Score=46.98 Aligned_cols=87 Identities=13% Similarity=0.153 Sum_probs=59.4
Q ss_pred HHHHHhCCceeeecccCCCchHHHHHHHHhcc-CC--ccccCcchhHHHHHHHHHHHHHHhCCCC-----CCCCCceEEE
Q 040403 271 EAIFTRWPNVIVQFEDFQSKWAFKLLQRYRYK-YR--MFNDDVQGTAGVAVAGLLGAVRAQGRSM-----IDFPKQKIVV 342 (623)
Q Consensus 271 ~av~~~~P~~lIqfEDf~~~nAf~lL~ryr~~-~~--~FNDDiQGTaaV~lAgll~A~r~~g~~~-----~~l~d~riv~ 342 (623)
+.+....|+ |.+|=+....-.++.++|.-. .| ++|++....|....+-++..++-...+. ....+..+||
T Consensus 139 ~~~a~~~~~--i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI 216 (517)
T PRK15317 139 NLMAVLNPN--ITHTMIDGALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTGAAARAAEELNAKDPYDVLV 216 (517)
T ss_pred HHHHHhCCC--ceEEEEEchhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhccccccchhhcccCCCCCEEE
Confidence 333444575 444445556667788898764 44 4588888888888888888877532210 1134578999
Q ss_pred eCcchHHHHHHHHHHHH
Q 040403 343 AGAGSAGLGVLNAARKT 359 (623)
Q Consensus 343 ~GAGsAg~GIA~ll~~~ 359 (623)
+|||.||+..|..+...
T Consensus 217 IGgGpaGl~aA~~la~~ 233 (517)
T PRK15317 217 VGGGPAGAAAAIYAARK 233 (517)
T ss_pred ECCCHHHHHHHHHHHHC
Confidence 99999999999888663
No 213
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=77.22 E-value=2.5 Score=45.35 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=20.4
Q ss_pred CceEEEeCcchHHHHHHHHHHHH
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~ 359 (623)
..||.|+|+|+-|..+|..|.+.
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~ 29 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARR 29 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC
Confidence 57899999999999999988763
No 214
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=76.91 E-value=9.3 Score=38.43 Aligned_cols=148 Identities=16% Similarity=0.212 Sum_probs=78.5
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWE 415 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~ 415 (623)
.++||.|+|.|..+ .+|.-+...|.. ++.. +--...-+.+.|..-+++.- .+-..+-.-|++.
T Consensus 40 ~~~rI~~~G~GgSa-~~A~~~a~~l~~--~~~~--~r~gl~a~~l~~d~~~~ta~-and~~~~~~f~~q----------- 102 (196)
T PRK10886 40 NGNKILCCGNGTSA-ANAQHFAASMIN--RFET--ERPSLPAIALNTDNVVLTAI-ANDRLHDEVYAKQ----------- 102 (196)
T ss_pred cCCEEEEEECcHHH-HHHHHHHHHHhc--cccc--cCCCcceEEecCcHHHHHHH-hccccHHHHHHHH-----------
Confidence 57899999999887 488877776643 1100 00011223343333333321 1112334455532
Q ss_pred CCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCcc
Q 040403 416 GASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGSPFKDV 495 (623)
Q Consensus 416 ~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~Grai~AtGsPF~pv 495 (623)
|.-..+ +-|++|+.|..|. |+++++.++ -|.+ .+-+.|.-||.+-.|+
T Consensus 103 ---l~~~~~--~gDvli~iS~SG~--s~~v~~a~~------------------------~Ak~-~G~~vI~IT~~~~s~l 150 (196)
T PRK10886 103 ---VRALGH--AGDVLLAISTRGN--SRDIVKAVE------------------------AAVT-RDMTIVALTGYDGGEL 150 (196)
T ss_pred ---HHHcCC--CCCEEEEEeCCCC--CHHHHHHHH------------------------HHHH-CCCEEEEEeCCCCChh
Confidence 222223 7799999998766 599999882 2222 2334555566542222
Q ss_pred ccCCCeeccCCCCccccchhHHHHHHHHcCCcccCHHHHHHHHHHHHcccC
Q 040403 496 DLGNGHIGHCNQGNNMYLFPGVGLGTLLSGSRIISDGMLQAAAECLAEYMT 546 (623)
Q Consensus 496 ~~~~G~~~~p~Q~NN~yiFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v~ 546 (623)
. -..+.++=....|. .-..+-.++-+..-+.|.+++.
T Consensus 151 ~------~l~~~~D~~i~ip~--------~~~~~v~e~h~~i~H~l~~~v~ 187 (196)
T PRK10886 151 A------GLLGPQDVEIRIPS--------HRSARIQEMHMLTVNCLCDLID 187 (196)
T ss_pred h------hccccCCEEEEcCC--------CchHHHHHHHHHHHHHHHHHHH
Confidence 1 11223455555563 2233456666777788877763
No 215
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=76.86 E-value=5.2 Score=33.45 Aligned_cols=35 Identities=20% Similarity=0.420 Sum_probs=29.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCccc
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLIT 388 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~ 388 (623)
|++|+|+|..|+-+|..+... | .++.++++..-+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~-----g----------~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL-----G----------KEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-----T----------SEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHh-----C----------cEEEEEeccchhh
Confidence 799999999999999988653 6 5788999887765
No 216
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=76.78 E-value=2.3 Score=44.82 Aligned_cols=106 Identities=16% Similarity=0.215 Sum_probs=58.3
Q ss_pred CCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhccc--
Q 040403 335 FPKQKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQ-- 411 (623)
Q Consensus 335 l~d~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~-- 411 (623)
++..+|+|.|| |-.|..+++.|++. | .+++.+|++.- ......... .....+..+
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~-----G----------~~V~~~~r~~~------~~~~~~~~~-~~~~~~~~~~~ 59 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLEL-----G----------AEVYGYSLDPP------TSPNLFELL-NLAKKIEDHFG 59 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHC-----C----------CEEEEEeCCCc------cchhHHHHH-hhcCCceEEEc
Confidence 45689999997 77777777777653 6 35777776521 111110000 000011000
Q ss_pred ccCCCCCHHHHHhhcCCcEEEeccCCCCC----------------CCHHHHHHcccCCC-CCCEEEecC
Q 040403 412 GLWEGASLVEVVQQVKPDVLLGLSAVGGL----------------FSKEVLEAMRGSTS-TRPAIFAMS 463 (623)
Q Consensus 412 ~~~~~~~L~e~V~~vkptvLIG~S~~~g~----------------Ft~evv~~M~a~~~-erPIIFaLS 463 (623)
......++.++++..+||++|=+.+.+.. .+..++++| ...+ .+.+||.=|
T Consensus 60 Dl~~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~-~~~~~~~~iv~~SS 127 (349)
T TIGR02622 60 DIRDAAKLRKAIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAI-RAIGSVKAVVNVTS 127 (349)
T ss_pred cCCCHHHHHHHHhhcCCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHH-HhcCCCCEEEEEec
Confidence 01223457788888899999977764311 134556777 3433 457888655
No 217
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=76.61 E-value=7.9 Score=41.37 Aligned_cols=132 Identities=17% Similarity=0.197 Sum_probs=91.7
Q ss_pred HHHHHHHHHHhC--Cce---eeecccCCCchHHHHHHHHhc--cCCcccc--------CcchhHHHHHHHHHHHHHHhCC
Q 040403 266 IDEFMEAIFTRW--PNV---IVQFEDFQSKWAFKLLQRYRY--KYRMFND--------DVQGTAGVAVAGLLGAVRAQGR 330 (623)
Q Consensus 266 vdefv~av~~~~--P~~---lIqfEDf~~~nAf~lL~ryr~--~~~~FND--------DiQGTaaV~lAgll~A~r~~g~ 330 (623)
-+|+.+.+.++- |++ ++||==...-++-.+|++--- .+==||- ...+---+|-+|++--++-.+.
T Consensus 73 ~~eLl~~I~~lN~D~~v~GIlVQlPLp~hld~~~il~~I~p~KDVDG~hp~N~g~L~~~~~~~~PCTp~gi~~ll~~~~i 152 (283)
T COG0190 73 EEELLALIDELNADPEVDGILVQLPLPKHLDEQKLLQAIDPEKDVDGFHPYNLGKLAQGEPGFLPCTPAGIMTLLEEYGI 152 (283)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhhcCcCCCccccChhHhcchhcCCCCCCCCCHHHHHHHHHHhCC
Confidence 366777777775 553 788765555556666655321 1111111 1334556788999999999999
Q ss_pred CCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhc
Q 040403 331 SMIDFPKQKIVVAGAGS-AGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEIS 409 (623)
Q Consensus 331 ~~~~l~d~riv~~GAGs-Ag~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~ 409 (623)
+ |.+.++||+|.+. -|--+|.+|..+ +. .+.+|.|+
T Consensus 153 ~---l~Gk~~vVVGrS~iVGkPla~lL~~~-----na----------TVtvcHs~------------------------- 189 (283)
T COG0190 153 D---LRGKNVVVVGRSNIVGKPLALLLLNA-----NA----------TVTVCHSR------------------------- 189 (283)
T ss_pred C---CCCCEEEEECCCCcCcHHHHHHHHhC-----CC----------EEEEEcCC-------------------------
Confidence 9 9999999999974 577788887763 53 35556553
Q ss_pred ccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHH
Q 040403 410 RQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEA 448 (623)
Q Consensus 410 ~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 448 (623)
..+|.+.++ ++|++|-+-|.++.|+.++|+.
T Consensus 190 ------T~~l~~~~k--~ADIvv~AvG~p~~i~~d~vk~ 220 (283)
T COG0190 190 ------TKDLASITK--NADIVVVAVGKPHFIKADMVKP 220 (283)
T ss_pred ------CCCHHHHhh--hCCEEEEecCCccccccccccC
Confidence 234777777 8999999999999999888774
No 218
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=76.56 E-value=2.8 Score=41.73 Aligned_cols=78 Identities=15% Similarity=0.329 Sum_probs=52.4
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLW 414 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~ 414 (623)
|++.||+|+|+|.-|.-+|+.|+.+ |+ ++|.++|.+- +.. .+|+. +.|.+. ++. +.+
T Consensus 19 L~~s~VlIiG~gglG~evak~La~~-----GV---------g~i~lvD~d~-ve~--snL~r--qfl~~~-~di---G~~ 75 (197)
T cd01492 19 LRSARILLIGLKGLGAEIAKNLVLS-----GI---------GSLTILDDRT-VTE--EDLGA--QFLIPA-EDL---GQN 75 (197)
T ss_pred HHhCcEEEEcCCHHHHHHHHHHHHc-----CC---------CEEEEEECCc-ccH--hhCCC--CccccH-HHc---Cch
Confidence 7889999999999999999999886 96 7899999973 221 23332 122221 111 012
Q ss_pred CCCCHHHHHhhcCCcEEEecc
Q 040403 415 EGASLVEVVQQVKPDVLLGLS 435 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLIG~S 435 (623)
....+.+.++...|++-|=..
T Consensus 76 Ka~a~~~~L~~lNp~v~i~~~ 96 (197)
T cd01492 76 RAEASLERLRALNPRVKVSVD 96 (197)
T ss_pred HHHHHHHHHHHHCCCCEEEEE
Confidence 234577888888998877543
No 219
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=76.14 E-value=4.4 Score=44.05 Aligned_cols=21 Identities=19% Similarity=0.476 Sum_probs=18.8
Q ss_pred eEEEeCcchHHHHHHHHHHHH
Q 040403 339 KIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~ 359 (623)
||.|+|||+-|+.+|..+...
T Consensus 1 kI~VIGaG~wGtALA~~la~n 21 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN 21 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc
Confidence 689999999999999999763
No 220
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=75.76 E-value=3.2 Score=45.12 Aligned_cols=110 Identities=25% Similarity=0.383 Sum_probs=70.0
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLW 414 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~ 414 (623)
...-+|+|+|.|-+|+--|++.. |+. .++.+.|.+ .+| |....-.|...-+-. ..
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~-------glg--------A~Vtild~n----~~r--l~~ldd~f~~rv~~~----~s 220 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAI-------GLG--------ADVTILDLN----IDR--LRQLDDLFGGRVHTL----YS 220 (371)
T ss_pred CCCccEEEECCccccchHHHHHh-------ccC--------CeeEEEecC----HHH--HhhhhHhhCceeEEE----Ec
Confidence 44689999999999998887655 443 456777763 111 322223333110000 12
Q ss_pred CCCCHHHHHhhcCCcEEEec-----cCCCCCCCHHHHHHcccCCCCCCE----------EEecCCCCCCCCCCHHH
Q 040403 415 EGASLVEVVQQVKPDVLLGL-----SAVGGLFSKEVLEAMRGSTSTRPA----------IFAMSNPTNNAECTPEE 475 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLIG~-----S~~~g~Ft~evv~~M~a~~~erPI----------IFaLSNPt~~~E~tped 475 (623)
....++|+|+ +.|.+||. +..|.+.|+|+++.|| +--+ +|-=|.||+..+-|.+.
T Consensus 221 t~~~iee~v~--~aDlvIgaVLIpgakaPkLvt~e~vk~Mk----pGsVivDVAiDqGGc~Et~~~TTh~~PtY~~ 290 (371)
T COG0686 221 TPSNIEEAVK--KADLVIGAVLIPGAKAPKLVTREMVKQMK----PGSVIVDVAIDQGGCFETSHPTTHDDPTYEV 290 (371)
T ss_pred CHHHHHHHhh--hccEEEEEEEecCCCCceehhHHHHHhcC----CCcEEEEEEEcCCCceeccccccCCCCceee
Confidence 2345999999 99999986 4467789999999993 3333 35556777777766653
No 221
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=75.64 E-value=10 Score=40.92 Aligned_cols=121 Identities=17% Similarity=0.171 Sum_probs=73.3
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCc---ccCCCCCCChhhHHhHHHhhhhccccc
Q 040403 338 QKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGL---ITEDRENIDPDAKPFARKVNEISRQGL 413 (623)
Q Consensus 338 ~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GL---i~~~r~~l~~~~~~fA~~~~~~~~~~~ 413 (623)
-||.|+|| |..|..+|-.|+.. |+-. -+=...|.|+|.+.- .....-||.+..-++-+ . .
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~-----~~~~---~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~---~-----~ 67 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASG-----ELFG---KDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLA---G-----V 67 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhC-----Cccc---CCCccEEEEEecCCcccccchHHHHHhhccccccC---C-----c
Confidence 48999998 99999999887753 5410 000127999998631 11111123222212211 0 0
Q ss_pred CCCCCHHHHHhhcCCcEEEeccCCC---CC-----------CCHHHHHHcccCCCC-CCEEEecCCCCCCCCCCHHHHhc
Q 040403 414 WEGASLVEVVQQVKPDVLLGLSAVG---GL-----------FSKEVLEAMRGSTST-RPAIFAMSNPTNNAECTPEEAFS 478 (623)
Q Consensus 414 ~~~~~L~e~V~~vkptvLIG~S~~~---g~-----------Ft~evv~~M~a~~~e-rPIIFaLSNPt~~~E~tpeda~~ 478 (623)
....+..+.++ +.|++|=+.|.+ |- .=+++++.+ .+++. .-||+--|||- ....--+++
T Consensus 68 ~i~~~~~~~~~--daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i-~~~~~~~~iiivvsNPv---Dv~t~v~~k 141 (323)
T TIGR01759 68 VATTDPEEAFK--DVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKAL-NKVAKKDVKVLVVGNPA---NTNALIASK 141 (323)
T ss_pred EEecChHHHhC--CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHH-HhhCCCCeEEEEeCCcH---HHHHHHHHH
Confidence 11235667777 899988555543 31 124577788 78887 99999999998 666666666
Q ss_pred cc
Q 040403 479 IV 480 (623)
Q Consensus 479 wT 480 (623)
++
T Consensus 142 ~s 143 (323)
T TIGR01759 142 NA 143 (323)
T ss_pred Hc
Confidence 65
No 222
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=75.29 E-value=3.7 Score=44.39 Aligned_cols=36 Identities=19% Similarity=0.407 Sum_probs=32.5
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
|+..||+|+|+|.-|.-+|..|..+ |+ .+|.++|.+
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~a-----Gv---------g~i~lvD~D 57 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRA-----GV---------GKVTIVDRD 57 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHc-----CC---------CeEEEEeCC
Confidence 8889999999999999999998875 85 679999996
No 223
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=75.08 E-value=33 Score=36.76 Aligned_cols=139 Identities=15% Similarity=0.152 Sum_probs=83.0
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhccccc
Q 040403 334 DFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGL 413 (623)
Q Consensus 334 ~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~ 413 (623)
.+.++++.|+|.|..|..+|+.+..+ |+ +++.+|+.. .. .+. +. . .
T Consensus 133 ~l~g~tvgIvG~G~IG~~vA~~l~af-----G~----------~V~~~~~~~----~~--~~~----~~----~-----~ 178 (312)
T PRK15469 133 HREDFTIGILGAGVLGSKVAQSLQTW-----GF----------PLRCWSRSR----KS--WPG----VQ----S-----F 178 (312)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHC-----CC----------EEEEEeCCC----CC--CCC----ce----e-----e
Confidence 38999999999999999999999874 85 466777631 11 000 00 0 0
Q ss_pred CCCCCHHHHHhhcCCcEEEecc----CCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHh--cccCCcEEEe
Q 040403 414 WEGASLVEVVQQVKPDVLLGLS----AVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAF--SIVGDNIIFA 487 (623)
Q Consensus 414 ~~~~~L~e~V~~vkptvLIG~S----~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~--~wT~Grai~A 487 (623)
....+|.|+++ +.|+++=+- ..-+.|+++.++.| .+..++.=.+. .++--|+|+ .-..|+.--|
T Consensus 179 ~~~~~l~e~l~--~aDvvv~~lPlt~~T~~li~~~~l~~m----k~ga~lIN~aR----G~vVde~aL~~aL~~g~i~ga 248 (312)
T PRK15469 179 AGREELSAFLS--QTRVLINLLPNTPETVGIINQQLLEQL----PDGAYLLNLAR----GVHVVEDDLLAALDSGKVKGA 248 (312)
T ss_pred cccccHHHHHh--cCCEEEECCCCCHHHHHHhHHHHHhcC----CCCcEEEECCC----ccccCHHHHHHHHhcCCeeeE
Confidence 12346999998 788887322 12377888999999 45567766554 555555554 2334655433
Q ss_pred cCCCCCccccCCCeeccCCCCccccchhHHH
Q 040403 488 SGSPFKDVDLGNGHIGHCNQGNNMYLFPGVG 518 (623)
Q Consensus 488 tGsPF~pv~~~~G~~~~p~Q~NN~yiFPGig 518 (623)
.--=|.+-..|... .--+..|+++-|=+|
T Consensus 249 alDVf~~EPl~~~~--pl~~~~nvi~TPHia 277 (312)
T PRK15469 249 MLDVFSREPLPPES--PLWQHPRVAITPHVA 277 (312)
T ss_pred EecCCCCCCCCCCC--hhhcCCCeEECCcCC
Confidence 32223222111111 112456888888776
No 224
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=75.02 E-value=3.8 Score=44.47 Aligned_cols=111 Identities=16% Similarity=0.181 Sum_probs=68.1
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCC--C------CCCChhhHHhHHHh-
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITED--R------ENIDPDAKPFARKV- 405 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~--r------~~l~~~~~~fA~~~- 405 (623)
|++.||+|+|+|..|.-+|..|+.+ |+ ++|.++|.+=+=..+ | .++...|..-|...
T Consensus 26 L~~~~VlivG~GGlGs~~a~~La~~-----Gv---------g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l 91 (355)
T PRK05597 26 LFDAKVAVIGAGGLGSPALLYLAGA-----GV---------GHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAM 91 (355)
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHc-----CC---------CeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHH
Confidence 7889999999999999999998875 96 789999997321111 1 11222333323211
Q ss_pred hhhcccc----cCC---CCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCC
Q 040403 406 NEISRQG----LWE---GASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSN 464 (623)
Q Consensus 406 ~~~~~~~----~~~---~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSN 464 (623)
.+..++. ... ..++.+.++ +.|++|-++. ..=++.++..+ +.....|.|++-+.
T Consensus 92 ~~~np~v~v~~~~~~i~~~~~~~~~~--~~DvVvd~~d--~~~~r~~~n~~-c~~~~ip~v~~~~~ 152 (355)
T PRK05597 92 LALNPDVKVTVSVRRLTWSNALDELR--DADVILDGSD--NFDTRHLASWA-AARLGIPHVWASIL 152 (355)
T ss_pred HHHCCCcEEEEEEeecCHHHHHHHHh--CCCEEEECCC--CHHHHHHHHHH-HHHcCCCEEEEEEe
Confidence 0111110 011 123456666 7888887763 22355667777 77788999987654
No 225
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=74.93 E-value=12 Score=39.18 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=27.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEcc
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDA 383 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~ 383 (623)
.||.|+|+|.-|-.||.-|+.. |.-. ..+|+++|+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~-----g~~~------~~~I~v~~r 37 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINK-----NIVS------PDQIICSDL 37 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHC-----CCCC------CceEEEECC
Confidence 4799999999999999888753 6411 357998887
No 226
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=74.60 E-value=30 Score=39.51 Aligned_cols=97 Identities=15% Similarity=0.042 Sum_probs=54.5
Q ss_pred cCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCC---CCCC-----CHHHHhcccC------CcEEEecCCC
Q 040403 426 VKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTN---NAEC-----TPEEAFSIVG------DNIIFASGSP 491 (623)
Q Consensus 426 vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~---~~E~-----tpeda~~wT~------Grai~AtGsP 491 (623)
.+|+.+|...+. .++.+-+..- ..+-+|=+-+-.-||.. +.|+ |.++++++.. |+..+-.|
T Consensus 112 ~~~~ailasntS--tl~i~~la~~-~~~p~r~~G~hff~Pa~v~~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~-- 186 (507)
T PRK08268 112 VSPDCILATNTS--SLSITAIAAA-LKHPERVAGLHFFNPVPLMKLVEVVSGLATDPAVADALYALARAWGKTPVRAK-- 186 (507)
T ss_pred CCCCcEEEECCC--CCCHHHHHhh-cCCcccEEEEeecCCcccCeeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEec--
Confidence 478888864321 2333334333 34445546777777653 2232 3344443321 33222222
Q ss_pred CCccccCCCeeccCCCCccccchhHHHHHHHHcCCcccCHHHHHHHH
Q 040403 492 FKDVDLGNGHIGHCNQGNNMYLFPGVGLGTLLSGSRIISDGMLQAAA 538 (623)
Q Consensus 492 F~pv~~~~G~~~~p~Q~NN~yiFPGiglG~~~~~a~~Itd~m~~aAA 538 (623)
..||-.+|-..+|.+.=+..+...--++.+-+..+.
T Consensus 187 -----------d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al 222 (507)
T PRK08268 187 -----------DTPGFIVNRAARPYYTEALRVLEEGVADPATIDAIL 222 (507)
T ss_pred -----------CCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 346779999999988888877766666666666554
No 227
>PRK06270 homoserine dehydrogenase; Provisional
Probab=74.47 E-value=22 Score=38.33 Aligned_cols=112 Identities=18% Similarity=0.227 Sum_probs=64.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHH---HHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChh-hHHhHHHhhhhcccc-
Q 040403 338 QKIVVAGAGSAGLGVLNAARKT---MARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPD-AKPFARKVNEISRQG- 412 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~---m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~-~~~fA~~~~~~~~~~- 412 (623)
.||.++|.|..|.+++++|.+. +.+..|+.. +=.-++|++|.+.+.+. ++.. ...+++.......+.
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~-------~vvai~d~~~~~~~~~G-i~~~~~~~~~~~~~~~~~~~~ 74 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDL-------KVVAIADSSGSAIDPDG-LDLELALKVKEETGKLADYPE 74 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCE-------EEEEEEeCCCcccCcCC-CCHHHHHHHHhccCCcccCcc
Confidence 5899999999999999998753 223224321 23457899998887543 3321 123332111000000
Q ss_pred cCCCCCHHHHHhhcCCcEEEeccCC---CCCCCHHHH-HHcccCCCCCCEEE
Q 040403 413 LWEGASLVEVVQQVKPDVLLGLSAV---GGLFSKEVL-EAMRGSTSTRPAIF 460 (623)
Q Consensus 413 ~~~~~~L~e~V~~vkptvLIG~S~~---~g~Ft~evv-~~M~a~~~erPIIF 460 (623)
.....++.|+++...+|++|=++.. ++-...+++ +++ .+..+||.
T Consensus 75 ~~~~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL---~~GkhVVt 123 (341)
T PRK06270 75 GGGEISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKAL---ERGKHVVT 123 (341)
T ss_pred ccccCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHH---HCCCEEEc
Confidence 0112489999988889999977642 122224554 444 24567776
No 228
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=74.40 E-value=12 Score=42.33 Aligned_cols=102 Identities=18% Similarity=0.185 Sum_probs=64.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGA 417 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~ 417 (623)
.+|-|+|.|.-|.++|..|... |. +++++|++ .+.-.+|...... .+.......
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~-----G~----------~V~v~dr~----------~~~~~~l~~~~~~-~g~~i~~~~ 55 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASR-----GF----------KISVYNRT----------YEKTEEFVKKAKE-GNTRVKGYH 55 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHC-----CC----------eEEEEeCC----------HHHHHHHHHhhhh-cCCcceecC
Confidence 3799999999999999999874 73 57788873 1111233321000 000012356
Q ss_pred CHHHHHhhc-CCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCC
Q 040403 418 SLVEVVQQV-KPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPT 466 (623)
Q Consensus 418 ~L~e~V~~v-kptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt 466 (623)
++.|+++.. +|+++| +.-.++..+++|++.++....+..||.=+||=.
T Consensus 56 s~~e~v~~l~~~d~Ii-l~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~ 104 (470)
T PTZ00142 56 TLEELVNSLKKPRKVI-LLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEW 104 (470)
T ss_pred CHHHHHhcCCCCCEEE-EEeCChHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 899999864 588555 232456677888877734456778999999843
No 229
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=74.34 E-value=20 Score=44.35 Aligned_cols=34 Identities=29% Similarity=0.375 Sum_probs=27.9
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+..+|+|+|||.||+..|..|... |. ++.++|+.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~-----G~----------~VtV~E~~ 462 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKY-----GV----------DVTVYEAL 462 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-----CC----------cEEEEecC
Confidence 468999999999999999988874 74 46677765
No 230
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=74.22 E-value=13 Score=40.05 Aligned_cols=120 Identities=15% Similarity=0.153 Sum_probs=72.4
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcc--cCC-CCCCChhhHHhHHHhhhhccccc
Q 040403 338 QKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLI--TED-RENIDPDAKPFARKVNEISRQGL 413 (623)
Q Consensus 338 ~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi--~~~-r~~l~~~~~~fA~~~~~~~~~~~ 413 (623)
.||.|+|| |..|..+|-.|+.. |+-. -.=...+.|+|.+.-. ..+ .-||.+...+|.. . .
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~-----~~~~---~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~---~-----~ 66 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASG-----EMFG---PDQPVILQLLELPQALKALEGVAMELEDCAFPLLA---E-----I 66 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc-----cccC---CCCceEEEEEecCCcccccceeehhhhhccccccC---c-----e
Confidence 49999999 99999988877652 5410 0001379999985322 111 1234333223321 0 0
Q ss_pred CCCCCHHHHHhhcCCcEEEeccCC---CCCCC------------HHHHHHcccCCC-CCCEEEecCCCCCCCCCCHHHHh
Q 040403 414 WEGASLVEVVQQVKPDVLLGLSAV---GGLFS------------KEVLEAMRGSTS-TRPAIFAMSNPTNNAECTPEEAF 477 (623)
Q Consensus 414 ~~~~~L~e~V~~vkptvLIG~S~~---~g~Ft------------~evv~~M~a~~~-erPIIFaLSNPt~~~E~tpeda~ 477 (623)
.-..+..+.++ +.|++|=+.+. +| .| +++...+ .+++ +.-||+-.|||- .+..--++
T Consensus 67 ~i~~~~~~~~~--daDivvitaG~~~k~g-~tR~dll~~N~~i~~~i~~~i-~~~~~~~~iiivvsNPv---D~~t~~~~ 139 (322)
T cd01338 67 VITDDPNVAFK--DADWALLVGAKPRGPG-MERADLLKANGKIFTAQGKAL-NDVASRDVKVLVVGNPC---NTNALIAM 139 (322)
T ss_pred EEecCcHHHhC--CCCEEEEeCCCCCCCC-CcHHHHHHHHHHHHHHHHHHH-HhhCCCCeEEEEecCcH---HHHHHHHH
Confidence 11234567777 89999855544 33 23 4567777 7888 489999999998 55555666
Q ss_pred ccc
Q 040403 478 SIV 480 (623)
Q Consensus 478 ~wT 480 (623)
+++
T Consensus 140 k~s 142 (322)
T cd01338 140 KNA 142 (322)
T ss_pred HHc
Confidence 654
No 231
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=73.99 E-value=2.8 Score=48.00 Aligned_cols=40 Identities=23% Similarity=0.249 Sum_probs=34.2
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCccc
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLIT 388 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~ 388 (623)
++..|.+++|||+-|++||+-|+.+ |+ ++|.+||.--+-+
T Consensus 338 is~~KcLLLGAGTLGC~VAR~Ll~W-----Gv---------RhITFvDn~kVsy 377 (669)
T KOG2337|consen 338 ISQTKCLLLGAGTLGCNVARNLLGW-----GV---------RHITFVDNGKVSY 377 (669)
T ss_pred hhcceeEEecCcccchHHHHHHHhh-----cc---------ceEEEEecCeeec
Confidence 4678999999999999999999998 95 8899999854433
No 232
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=73.79 E-value=18 Score=38.70 Aligned_cols=115 Identities=19% Similarity=0.286 Sum_probs=70.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCC-CCCChhhHHhHHHhhhhcccccCCCC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDR-ENIDPDAKPFARKVNEISRQGLWEGA 417 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r-~~l~~~~~~fA~~~~~~~~~~~~~~~ 417 (623)
||.|+|||..|.-+|-.|+.. |+ .+.+.|+|.+-=..++. -||.+.. .|.... ... . ..+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~-----~~--------~~elvL~Di~~~~a~g~a~DL~~~~-~~~~~~-~~~---i-~~~ 61 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALAL-----GL--------FSEIVLIDVNEGVAEGEALDFHHAT-ALTYST-NTK---I-RAG 61 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhc-----CC--------CCEEEEEeCCcchhhHHHHHHHhhh-ccCCCC-CEE---E-EEC
Confidence 689999999999999887752 65 35799999731000000 1122111 111000 000 0 112
Q ss_pred CHHHHHhhcCCcEEEeccCC---CCCCC--------------HHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhccc
Q 040403 418 SLVEVVQQVKPDVLLGLSAV---GGLFS--------------KEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIV 480 (623)
Q Consensus 418 ~L~e~V~~vkptvLIG~S~~---~g~Ft--------------~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT 480 (623)
+ .+.++ +.|++|=+.|. +| -| +++++.+ .+++...|++-.|||. .+..--+++.+
T Consensus 62 ~-y~~~~--~aDivvitaG~~~kpg-~tr~R~dll~~N~~I~~~i~~~i-~~~~p~~i~ivvsNPv---Dv~t~~~~k~s 133 (307)
T cd05290 62 D-YDDCA--DADIIVITAGPSIDPG-NTDDRLDLAQTNAKIIREIMGNI-TKVTKEAVIILITNPL---DIAVYIAATEF 133 (307)
T ss_pred C-HHHhC--CCCEEEECCCCCCCCC-CCchHHHHHHHHHHHHHHHHHHH-HHhCCCeEEEEecCcH---HHHHHHHHHHh
Confidence 3 46666 89998855554 34 23 5778888 8899999999999997 55666666654
No 233
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=73.71 E-value=4.9 Score=39.39 Aligned_cols=98 Identities=20% Similarity=0.283 Sum_probs=51.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHH----Hhh--hhc---
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFAR----KVN--EIS--- 409 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~----~~~--~~~--- 409 (623)
+|.|+|||..|.|||-+++.. |. ++.++|.+--- +...++.+.+ ... .+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-----G~----------~V~l~d~~~~~------l~~~~~~i~~~l~~~~~~~~~~~~~ 59 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-----GY----------EVTLYDRSPEA------LERARKRIERLLDRLVRKGRLSQEE 59 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-----TS----------EEEEE-SSHHH------HHHHHHHHHHHHHHHHHTTTTTHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhC-----CC----------cEEEEECChHH------HHhhhhHHHHHHhhhhhhccchhhh
Confidence 689999999999999999885 84 67888874211 1111111111 000 000
Q ss_pred --cc--ccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEe
Q 040403 410 --RQ--GLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFA 461 (623)
Q Consensus 410 --~~--~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFa 461 (623)
.. ...-..+|.+++ +.|.+|=+-.----..+++.+.+ .+.+..=.||+
T Consensus 60 ~~~~~~~i~~~~dl~~~~---~adlViEai~E~l~~K~~~~~~l-~~~~~~~~ila 111 (180)
T PF02737_consen 60 ADAALARISFTTDLEEAV---DADLVIEAIPEDLELKQELFAEL-DEICPPDTILA 111 (180)
T ss_dssp HHHHHHTEEEESSGGGGC---TESEEEE-S-SSHHHHHHHHHHH-HCCS-TTSEEE
T ss_pred hhhhhhhcccccCHHHHh---hhheehhhccccHHHHHHHHHHH-HHHhCCCceEE
Confidence 00 011234566655 57777765432223567788888 66664444443
No 234
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=73.70 E-value=12 Score=39.86 Aligned_cols=126 Identities=16% Similarity=0.217 Sum_probs=73.9
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHH----Hhhhhcccc
Q 040403 338 QKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFAR----KVNEISRQG 412 (623)
Q Consensus 338 ~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~----~~~~~~~~~ 412 (623)
.||.|+|| |..|..+|..++.. |+ ...++++|++--+ +.+...+.++.. ..... .
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~-----g~--------~~~v~lvd~~~~~----~~l~~~~~dl~d~~~~~~~~~-~-- 60 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKE-----DV--------VKEINLISRPKSL----EKLKGLRLDIYDALAAAGIDA-E-- 60 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhC-----CC--------CCEEEEEECcccc----cccccccchhhhchhccCCCc-E--
Confidence 37999998 99999999988763 65 2479999985211 112222222211 00000 0
Q ss_pred cCCCCCHHHHHhhcCCcEEEeccCCC---C-----------CCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhc
Q 040403 413 LWEGASLVEVVQQVKPDVLLGLSAVG---G-----------LFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFS 478 (623)
Q Consensus 413 ~~~~~~L~e~V~~vkptvLIG~S~~~---g-----------~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~ 478 (623)
.....+ .+.++ +.|++|=+.+.| | .+-+++++.| .+++...+|+-.+||. .+..-.+++
T Consensus 61 i~~~~d-~~~l~--~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i-~~~~~~~~viv~~npv---d~~t~~~~~ 133 (309)
T cd05294 61 IKISSD-LSDVA--GSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQI-AEFAPDTKILVVTNPV---DVMTYKALK 133 (309)
T ss_pred EEECCC-HHHhC--CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHCCCeEEEEeCCch---HHHHHHHHH
Confidence 011234 34577 889888555532 2 2356778888 7788899999999997 444445554
Q ss_pred ccC--CcEEEecCC
Q 040403 479 IVG--DNIIFASGS 490 (623)
Q Consensus 479 wT~--Grai~AtGs 490 (623)
++. .+-+|++|.
T Consensus 134 ~~g~~~~~viG~gt 147 (309)
T cd05294 134 ESGFDKNRVFGLGT 147 (309)
T ss_pred hcCCCHHHEeeccc
Confidence 431 233556554
No 235
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=73.05 E-value=29 Score=37.32 Aligned_cols=141 Identities=15% Similarity=0.187 Sum_probs=83.7
Q ss_pred ccCCccccCc---chhHHHHHHHHHHHHHHh---------------------CCCCCCCCCceEEEeCcchHHHHHHHHH
Q 040403 301 YKYRMFNDDV---QGTAGVAVAGLLGAVRAQ---------------------GRSMIDFPKQKIVVAGAGSAGLGVLNAA 356 (623)
Q Consensus 301 ~~~~~FNDDi---QGTaaV~lAgll~A~r~~---------------------g~~~~~l~d~riv~~GAGsAg~GIA~ll 356 (623)
..+.+.|--- ..+|=-+++.+|+.+|-. |.. |.++++.|+|.|..|..||+.+
T Consensus 88 ~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~---L~gktvGIiG~G~IG~~va~~l 164 (323)
T PRK15409 88 RKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTD---VHHKTLGIVGMGRIGMALAQRA 164 (323)
T ss_pred CCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCC---CCCCEEEEEcccHHHHHHHHHH
Confidence 3455555322 234555777777776631 233 8999999999999999999987
Q ss_pred HHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEec--
Q 040403 357 RKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGL-- 434 (623)
Q Consensus 357 ~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~-- 434 (623)
..+ .|+ ++..+|+.. .+. ... .. .....+|.|+++ +.|+++=.
T Consensus 165 ~~~----fgm----------~V~~~~~~~---------~~~--~~~----~~----~~~~~~l~ell~--~sDvv~lh~p 209 (323)
T PRK15409 165 HFG----FNM----------PILYNARRH---------HKE--AEE----RF----NARYCDLDTLLQ--ESDFVCIILP 209 (323)
T ss_pred Hhc----CCC----------EEEEECCCC---------chh--hHH----hc----CcEecCHHHHHH--hCCEEEEeCC
Confidence 622 265 355566531 000 000 00 112347999998 78887731
Q ss_pred --cCCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHh-c-ccCCcEEEe
Q 040403 435 --SAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAF-S-IVGDNIIFA 487 (623)
Q Consensus 435 --S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~-~-wT~Grai~A 487 (623)
...-|.|+++.++.| .+.-++.=.|. .++--|+|+ + -.+|+.-.|
T Consensus 210 lt~~T~~li~~~~l~~m----k~ga~lIN~aR----G~vVde~AL~~AL~~g~i~gA 258 (323)
T PRK15409 210 LTDETHHLFGAEQFAKM----KSSAIFINAGR----GPVVDENALIAALQKGEIHAA 258 (323)
T ss_pred CChHHhhccCHHHHhcC----CCCeEEEECCC----ccccCHHHHHHHHHcCCeeEE
Confidence 112388999999999 55667665554 444444333 2 224555433
No 236
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=72.51 E-value=36 Score=39.09 Aligned_cols=195 Identities=17% Similarity=0.204 Sum_probs=117.1
Q ss_pred chhhhHhHHHHHHHHHHhC-CceeeecccCC--CchHHHHHHHHhccC----------Ccc----ccCcchhHHHHHHHH
Q 040403 259 GDEYVSVIDEFMEAIFTRW-PNVIVQFEDFQ--SKWAFKLLQRYRYKY----------RMF----NDDVQGTAGVAVAGL 321 (623)
Q Consensus 259 g~~Y~~~vdefv~av~~~~-P~~lIqfEDf~--~~nAf~lL~ryr~~~----------~~F----NDDiQGTaaV~lAgl 321 (623)
..|-..+.-.||..+.+.- |..-+==+|++ ...---+++.|+..+ +.- |+-.--|+-=+..++
T Consensus 157 ~nEi~r~~~~f~~el~~~iGp~~DvPapdig~G~rEm~~if~~Ya~~~g~~~a~vTGK~i~~GGs~~R~~ATG~GV~~y~ 236 (514)
T KOG2250|consen 157 DNEIERITRRFTDELIDIIGPDTDVPAPDIGTGPREMGWIFDEYAKTHGHWKAVVTGKPISLGGSHGRYEATGRGVVYYV 236 (514)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCCccccccCcchhhhhHHHHHHhhcccceeeeCCCCccCCccCcccccchhHHHHH
Confidence 3444555566666655533 77766667776 223334788888632 111 333333544444433
Q ss_pred HHHHHHhC--CCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhh-
Q 040403 322 LGAVRAQG--RSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDA- 398 (623)
Q Consensus 322 l~A~r~~g--~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~- 398 (623)
=+=+.-.+ ++ +++.||++-|-|--|.--|..|.+. |- +-|-+-|++|.|.+.. .++..+
T Consensus 237 e~~~~~~~~~~~---~kgkr~~i~G~Gnv~~~aa~~l~~~-----G~---------kvvavsD~~G~l~np~-Gid~~eL 298 (514)
T KOG2250|consen 237 EAILNDANGKKG---IKGKRVVIQGFGNVGGHAAKKLSEK-----GA---------KVVAVSDSKGVLINPD-GIDIEEL 298 (514)
T ss_pred HHHHHhccCCCC---cCceEEEEeCCCchHHHHHHHHHhc-----CC---------EEEEEEcCceeEECCC-CCCHHHH
Confidence 33333333 44 9999999999999998888888775 62 5688899999998754 354433
Q ss_pred HHhHHHhhhhcccc-cCCC-C------CHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCC-CCCCC
Q 040403 399 KPFARKVNEISRQG-LWEG-A------SLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSN-PTNNA 469 (623)
Q Consensus 399 ~~fA~~~~~~~~~~-~~~~-~------~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSN-Pt~~~ 469 (623)
..++.....+.+.. .... . .+.--|. +.|+++=|.++ +..|.+=.+..++++| |+|.==|| ||. +
T Consensus 299 ~~~~~~k~~i~~f~~~~~~~~~~~~~~~~~~~v~--~~DI~vPCA~q-n~I~~~nA~~lvak~~--~~IvEGAN~ptT-p 372 (514)
T KOG2250|consen 299 LDLADEKKTIKSFDGAKLSYEGYIAGLPPWTLVE--KCDILVPCATQ-NEITGENAKALVAKGC--KYIVEGANMPTT-P 372 (514)
T ss_pred HHHHHhhccccccccccccCccccccCcchhhHh--hCcEEeecCcc-CcccHhhHHHHHhcCC--cEEEecCCCCCC-h
Confidence 22332111111110 0000 0 0122334 89999999988 9999999888878888 89999999 553 3
Q ss_pred CCCHHHHhcc
Q 040403 470 ECTPEEAFSI 479 (623)
Q Consensus 470 E~tpeda~~w 479 (623)
| +.++++-
T Consensus 373 e--A~~vlek 380 (514)
T KOG2250|consen 373 E--ADEVLEK 380 (514)
T ss_pred h--HHHHHHh
Confidence 3 3355553
No 237
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=72.38 E-value=15 Score=39.52 Aligned_cols=75 Identities=24% Similarity=0.261 Sum_probs=42.7
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEG 416 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~ 416 (623)
+.+++|+|+|+.|+..+.+... .|. ++|+++|. ++.+..+|+....-........
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~-----~Ga---------~~Viv~d~-----------~~~Rl~~A~~~~g~~~~~~~~~ 223 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKL-----LGA---------SVVIVVDR-----------SPERLELAKEAGGADVVVNPSE 223 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-----cCC---------ceEEEeCC-----------CHHHHHHHHHhCCCeEeecCcc
Confidence 3399999999999766333332 374 56998887 3566677754111000001111
Q ss_pred CCHHHHHhh----cCCcEEEeccC
Q 040403 417 ASLVEVVQQ----VKPDVLLGLSA 436 (623)
Q Consensus 417 ~~L~e~V~~----vkptvLIG~S~ 436 (623)
....+.+.. .+.|+.|=+||
T Consensus 224 ~~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 224 DDAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred ccHHHHHHHHhCCCCCCEEEECCC
Confidence 123333322 36899999997
No 238
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=72.27 E-value=21 Score=38.11 Aligned_cols=122 Identities=23% Similarity=0.207 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCC
Q 040403 313 TAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRE 392 (623)
Q Consensus 313 TaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~ 392 (623)
||+++. ++ .|....+ .-.++.|+|+|.-|..-++.+... .+ .++|+++|+.
T Consensus 112 TaA~sa---la-~~~La~~----~~~~l~viGaG~QA~~~~~a~~~~----~~---------i~~v~v~~r~-------- 162 (313)
T PF02423_consen 112 TAAVSA---LA-ARYLARP----DARTLGVIGAGVQARWHLRALAAV----RP---------IKEVRVYSRS-------- 162 (313)
T ss_dssp HHHHHH---HH-HHHHS-T----T--EEEEE--SHHHHHHHHHHHHH----S-----------SEEEEE-SS--------
T ss_pred HHHHHH---HH-HHHhCcC----CCceEEEECCCHHHHHHHHHHHHh----CC---------ceEEEEEccC--------
Confidence 565433 33 3444444 346999999999887777766554 24 3779988874
Q ss_pred CCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCC---CCCHHHHHHcccCCCCCCEEEecCCCC-CC
Q 040403 393 NIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGG---LFSKEVLEAMRGSTSTRPAIFAMSNPT-NN 468 (623)
Q Consensus 393 ~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g---~Ft~evv~~M~a~~~erPIIFaLSNPt-~~ 468 (623)
.+.-..|++.-.+ .........+++++++ ..|+++.+..... .|+.++++. .-.|-++.--+ .+
T Consensus 163 --~~~~~~~~~~~~~-~~~~v~~~~~~~~av~--~aDii~taT~s~~~~P~~~~~~l~~-------g~hi~~iGs~~~~~ 230 (313)
T PF02423_consen 163 --PERAEAFAARLRD-LGVPVVAVDSAEEAVR--GADIIVTATPSTTPAPVFDAEWLKP-------GTHINAIGSYTPGM 230 (313)
T ss_dssp --HHHHHHHHHHHHC-CCTCEEEESSHHHHHT--TSSEEEE----SSEEESB-GGGS-T-------T-EEEE-S-SSTTB
T ss_pred --hhHHHHHHHhhcc-ccccceeccchhhhcc--cCCEEEEccCCCCCCccccHHHcCC-------CcEEEEecCCCCch
Confidence 2333556543222 1111224578999999 8999998765433 466665542 23455554321 23
Q ss_pred CCCCHHH
Q 040403 469 AECTPEE 475 (623)
Q Consensus 469 ~E~tped 475 (623)
.|+.++-
T Consensus 231 ~El~~~~ 237 (313)
T PF02423_consen 231 RELDDEL 237 (313)
T ss_dssp ESB-HHH
T ss_pred hhcCHHH
Confidence 4666543
No 239
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=72.24 E-value=32 Score=37.72 Aligned_cols=114 Identities=18% Similarity=0.239 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHHHHHHhCC----------------C-CCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhc
Q 040403 312 GTAGVAVAGLLGAVRAQGR----------------S-MIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSA 374 (623)
Q Consensus 312 GTaaV~lAgll~A~r~~g~----------------~-~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA 374 (623)
-||-++++-+|.++|-... + -.++.++||.|+|.|+.|.-||+.|..+ |.
T Consensus 120 ~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~F-----g~-------- 186 (336)
T KOG0069|consen 120 DVADLAVSLLLALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPF-----GC-------- 186 (336)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhc-----cc--------
Confidence 4677777777777774322 0 0248999999999999999999999875 51
Q ss_pred cCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccC----CCCCCCHHHHHHcc
Q 040403 375 RSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSA----VGGLFSKEVLEAMR 450 (623)
Q Consensus 375 ~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~----~~g~Ft~evv~~M~ 450 (623)
.|....+... + ....+..++ ..-++.|... +.|++|=..- .-++|+++.+..|
T Consensus 187 --~i~y~~r~~~----~--~~~~~~~~~------------~~~d~~~~~~--~sD~ivv~~pLt~~T~~liNk~~~~~m- 243 (336)
T KOG0069|consen 187 --VILYHSRTQL----P--PEEAYEYYA------------EFVDIEELLA--NSDVIVVNCPLTKETRHLINKKFIEKM- 243 (336)
T ss_pred --eeeeecccCC----c--hhhHHHhcc------------cccCHHHHHh--hCCEEEEecCCCHHHHHHhhHHHHHhc-
Confidence 2332322111 0 111122222 1345777777 7888884431 2388999999999
Q ss_pred cCCCCCCEEEecCC
Q 040403 451 GSTSTRPAIFAMSN 464 (623)
Q Consensus 451 a~~~erPIIFaLSN 464 (623)
.+.=+|.-.+.
T Consensus 244 ---k~g~vlVN~aR 254 (336)
T KOG0069|consen 244 ---KDGAVLVNTAR 254 (336)
T ss_pred ---CCCeEEEeccc
Confidence 55555554444
No 240
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=72.13 E-value=7.6 Score=41.99 Aligned_cols=106 Identities=16% Similarity=0.258 Sum_probs=64.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC-CcccCCCCCCChhhHHhHHHhhhhcccccCCC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK-GLITEDRENIDPDAKPFARKVNEISRQGLWEG 416 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~-GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~ 416 (623)
.||.|+|||..|...|-+|+.. ++. +.+.|+|.. +......-||.+.. .+.. .+.. ....
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~-----~~~--------~el~LiDi~~~~~~G~a~DL~~~~-~~~~--~~~~---i~~~ 61 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQ-----GLG--------SELVLIDINEEKAEGVALDLSHAA-APLG--SDVK---ITGD 61 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcc-----ccc--------ceEEEEEcccccccchhcchhhcc-hhcc--CceE---EecC
Confidence 3899999999999888888432 543 369999987 22211222343321 1110 0100 0111
Q ss_pred CCHHHHHhhcCCcEEEeccC---CCCC-----------CCHHHHHHcccCCCCCCEEEecCCCC
Q 040403 417 ASLVEVVQQVKPDVLLGLSA---VGGL-----------FSKEVLEAMRGSTSTRPAIFAMSNPT 466 (623)
Q Consensus 417 ~~L~e~V~~vkptvLIG~S~---~~g~-----------Ft~evv~~M~a~~~erPIIFaLSNPt 466 (623)
.+ .+.++ +.|+.|=+.| .||- .-+++.+++ ++++...||+-.|||.
T Consensus 62 ~~-y~~~~--~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i-~~~~~d~ivlVvtNPv 121 (313)
T COG0039 62 GD-YEDLK--GADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAI-AKYAPDAIVLVVTNPV 121 (313)
T ss_pred CC-hhhhc--CCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHH-HhhCCCeEEEEecCcH
Confidence 23 45566 7888774443 4451 336788888 8999999999999998
No 241
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=72.10 E-value=5.2 Score=43.50 Aligned_cols=33 Identities=33% Similarity=0.567 Sum_probs=26.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEcc
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDA 383 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~ 383 (623)
++|.|+|||+=|+.+|..+.+- |- .=++|..|.
T Consensus 2 ~kI~ViGaGswGTALA~~la~n-----g~--------~V~lw~r~~ 34 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARN-----GH--------EVRLWGRDE 34 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhc-----CC--------eeEEEecCH
Confidence 5899999999999999999884 62 136787764
No 242
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=71.74 E-value=67 Score=33.93 Aligned_cols=69 Identities=12% Similarity=0.086 Sum_probs=39.3
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWE 415 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~ 415 (623)
.+++++|+|+|..|+..+.++... .|- .+++.+|+. +.+..+|+.. . . .
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~----~g~---------~~vi~~~~~-----------~~k~~~a~~~-~-----~-~ 211 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQI----YPE---------SKLVVFGKH-----------QEKLDLFSFA-D-----E-T 211 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHh----cCC---------CcEEEEeCc-----------HhHHHHHhhc-C-----c-e
Confidence 478999999998776665555432 141 357777762 3345555421 1 0 0
Q ss_pred CCCHHHHHhhcCCcEEEeccC
Q 040403 416 GASLVEVVQQVKPDVLLGLSA 436 (623)
Q Consensus 416 ~~~L~e~V~~vkptvLIG~S~ 436 (623)
..+.+..+..+.|+.|=+++
T Consensus 212 -~~~~~~~~~~g~d~viD~~G 231 (341)
T cd08237 212 -YLIDDIPEDLAVDHAFECVG 231 (341)
T ss_pred -eehhhhhhccCCcEEEECCC
Confidence 11223334446889887775
No 243
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=71.68 E-value=19 Score=40.03 Aligned_cols=125 Identities=22% Similarity=0.278 Sum_probs=85.4
Q ss_pred cCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcc
Q 040403 308 DDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLI 387 (623)
Q Consensus 308 DDiQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi 387 (623)
|.-.||+--++-|++.|.. .- +....+|+.|=|--|-|||..+... |. ++++.+-
T Consensus 186 DNrYGtgqS~~DgI~RaTn---~l---iaGK~vVV~GYG~vGrG~A~~~rg~-----GA----------~ViVtEv---- 240 (420)
T COG0499 186 DNRYGTGQSLLDGILRATN---VL---LAGKNVVVAGYGWVGRGIAMRLRGM-----GA----------RVIVTEV---- 240 (420)
T ss_pred ccccccchhHHHHHHhhhc---ee---ecCceEEEecccccchHHHHHhhcC-----CC----------eEEEEec----
Confidence 6779999999999987655 44 8889999999999999999887653 52 3443332
Q ss_pred cCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCC-
Q 040403 388 TEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPT- 466 (623)
Q Consensus 388 ~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt- 466 (623)
++.+.-=|. -+ .-.--++.||++ ..|++|-++|.-++.+.|.++.| .+.-|+ +|--
T Consensus 241 -------DPI~AleA~--Md-----Gf~V~~m~~Aa~--~gDifiT~TGnkdVi~~eh~~~M----kDgaIl---~N~GH 297 (420)
T COG0499 241 -------DPIRALEAA--MD-----GFRVMTMEEAAK--TGDIFVTATGNKDVIRKEHFEKM----KDGAIL---ANAGH 297 (420)
T ss_pred -------CchHHHHHh--hc-----CcEEEEhHHhhh--cCCEEEEccCCcCccCHHHHHhc----cCCeEE---ecccc
Confidence 222211121 11 122345899999 78999999999999999999999 344443 3322
Q ss_pred CCCCCCHHH----Hhccc
Q 040403 467 NNAECTPEE----AFSIV 480 (623)
Q Consensus 467 ~~~E~tped----a~~wT 480 (623)
-.-|+..+. +.+|.
T Consensus 298 Fd~EI~~~~L~~~~~~~~ 315 (420)
T COG0499 298 FDVEIDVAGLEELAVEKR 315 (420)
T ss_pred cceeccHHHHHHhhhhHh
Confidence 225666654 44554
No 244
>PRK07411 hypothetical protein; Validated
Probab=71.49 E-value=4.7 Score=44.41 Aligned_cols=110 Identities=13% Similarity=0.176 Sum_probs=67.2
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCC---C------CCCChhhHHhHHHh
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITED---R------ENIDPDAKPFARKV 405 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~---r------~~l~~~~~~fA~~~ 405 (623)
|++.||+|+|+|.-|.-||..|+.+ |+ ++|.++|.+ .|..+ | .++...|..-|...
T Consensus 36 L~~~~VlivG~GGlG~~va~~La~~-----Gv---------g~l~lvD~D-~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~ 100 (390)
T PRK07411 36 LKAASVLCIGTGGLGSPLLLYLAAA-----GI---------GRIGIVDFD-VVDSSNLQRQVIHGTSWVGKPKIESAKNR 100 (390)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHc-----CC---------CEEEEECCC-EecccccCcCcccChHHCCCcHHHHHHHH
Confidence 8889999999999999999999986 96 789999987 22221 1 11222232222211
Q ss_pred -hhhcccc----cC---CCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCC
Q 040403 406 -NEISRQG----LW---EGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSN 464 (623)
Q Consensus 406 -~~~~~~~----~~---~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSN 464 (623)
.+..++. .. ...+..+.++ +.|++|-+... .=++.+|..+ +.....|.|++-..
T Consensus 101 l~~~np~v~v~~~~~~~~~~~~~~~~~--~~D~Vvd~~d~--~~~r~~ln~~-~~~~~~p~v~~~~~ 162 (390)
T PRK07411 101 ILEINPYCQVDLYETRLSSENALDILA--PYDVVVDGTDN--FPTRYLVNDA-CVLLNKPNVYGSIF 162 (390)
T ss_pred HHHHCCCCeEEEEecccCHHhHHHHHh--CCCEEEECCCC--HHHHHHHHHH-HHHcCCCEEEEEEc
Confidence 1111110 00 1123455666 67888877632 2356777777 77778888875443
No 245
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=71.29 E-value=22 Score=38.97 Aligned_cols=37 Identities=11% Similarity=0.042 Sum_probs=28.1
Q ss_pred HHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCc
Q 040403 324 AVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNE 368 (623)
Q Consensus 324 A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~ 368 (623)
++.-.... |.+.|++|+|-+.-..++++.|.+. |+..
T Consensus 266 ~l~~~~~~---l~Gkrv~i~g~~~~~~~la~~L~el-----Gm~v 302 (396)
T cd01979 266 ALEPYLDL---LRGKSIFFMGDNLLEIPLARFLTRC-----GMIV 302 (396)
T ss_pred HHHHHHHh---hcCCEEEEECCchHHHHHHHHHHHC-----CCEE
Confidence 33344445 7788999999999899999998874 9754
No 246
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=71.04 E-value=8.5 Score=41.64 Aligned_cols=36 Identities=17% Similarity=0.371 Sum_probs=28.8
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+..||||+|+|.||+..|..|... |.+ .+|.++|..
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~-----~~~--------~~I~li~~e 37 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQ-----GFT--------GELHLFSDE 37 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhh-----CCC--------CCEEEeCCC
Confidence 457899999999999999998764 532 368888875
No 247
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=70.82 E-value=4.9 Score=44.18 Aligned_cols=111 Identities=16% Similarity=0.197 Sum_probs=66.9
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCC--C------CCCChhhHHhHHHh-
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITED--R------ENIDPDAKPFARKV- 405 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~--r------~~l~~~~~~fA~~~- 405 (623)
|++.||+|+|+|.-|.-+|..|+.+ |+ ++|.++|.+=+=..+ | .++...|..-|+..
T Consensus 40 L~~~~VlviG~GGlGs~va~~La~~-----Gv---------g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l 105 (392)
T PRK07878 40 LKNARVLVIGAGGLGSPTLLYLAAA-----GV---------GTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSI 105 (392)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHc-----CC---------CeEEEECCCEecCcccccccccChhcCCChHHHHHHHHH
Confidence 7889999999999999999999886 96 789999986221111 1 12322333333221
Q ss_pred hhhcccc----cC---CCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCC
Q 040403 406 NEISRQG----LW---EGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSN 464 (623)
Q Consensus 406 ~~~~~~~----~~---~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSN 464 (623)
.+..++. .. ...++.+.++ +.|++|-++... =++-.+..+ +.....|.|++-+.
T Consensus 106 ~~~np~v~i~~~~~~i~~~~~~~~~~--~~D~Vvd~~d~~--~~r~~ln~~-~~~~~~p~v~~~~~ 166 (392)
T PRK07878 106 VEINPLVNVRLHEFRLDPSNAVELFS--QYDLILDGTDNF--ATRYLVNDA-AVLAGKPYVWGSIY 166 (392)
T ss_pred HHhCCCcEEEEEeccCChhHHHHHHh--cCCEEEECCCCH--HHHHHHHHH-HHHcCCCEEEEEec
Confidence 1111110 01 1123556666 689999776321 245556677 67778898886443
No 248
>PRK07340 ornithine cyclodeaminase; Validated
Probab=70.80 E-value=45 Score=35.49 Aligned_cols=74 Identities=16% Similarity=0.246 Sum_probs=48.0
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWE 415 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~ 415 (623)
...+++|+|+|..|...++.++.. .+. ++|+++|+. .+..+.|+..-... ++ .-.
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~----~~~---------~~v~v~~r~----------~~~a~~~a~~~~~~-~~-~~~ 178 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAG----LPV---------RRVWVRGRT----------AASAAAFCAHARAL-GP-TAE 178 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHh----CCC---------CEEEEEcCC----------HHHHHHHHHHHHhc-CC-eeE
Confidence 567999999999998888777653 143 568888884 22234455321110 00 001
Q ss_pred CCCHHHHHhhcCCcEEEeccC
Q 040403 416 GASLVEVVQQVKPDVLLGLSA 436 (623)
Q Consensus 416 ~~~L~e~V~~vkptvLIG~S~ 436 (623)
..++.++++ +.|++|-++.
T Consensus 179 ~~~~~~av~--~aDiVitaT~ 197 (304)
T PRK07340 179 PLDGEAIPE--AVDLVVTATT 197 (304)
T ss_pred ECCHHHHhh--cCCEEEEccC
Confidence 457899998 9999998764
No 249
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=70.19 E-value=5 Score=38.31 Aligned_cols=30 Identities=30% Similarity=0.449 Sum_probs=21.0
Q ss_pred EEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 341 VVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 341 v~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+|+|||.||+..|-.|.+. |+ +++.++|+.
T Consensus 1 ~IIGaG~aGl~~a~~l~~~-----g~---------~~v~v~e~~ 30 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLER-----GI---------DPVVVLERN 30 (203)
T ss_dssp EEE--SHHHHHHHHHHHHT-----T------------EEEEESS
T ss_pred CEECcCHHHHHHHHHHHhC-----CC---------CcEEEEeCC
Confidence 6899999999999877664 75 338888876
No 250
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=69.71 E-value=9.7 Score=43.65 Aligned_cols=35 Identities=26% Similarity=0.437 Sum_probs=26.5
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+++.+++|+|||.+|.+|+..|.+ . |. +|+++|+.
T Consensus 377 ~~~k~vlIlGaGGagrAia~~L~~----~-G~----------~V~i~nR~ 411 (529)
T PLN02520 377 LAGKLFVVIGAGGAGKALAYGAKE----K-GA----------RVVIANRT 411 (529)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHH----C-CC----------EEEEEcCC
Confidence 788999999999777777666654 2 72 68888873
No 251
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=68.69 E-value=50 Score=37.89 Aligned_cols=217 Identities=18% Similarity=0.164 Sum_probs=119.1
Q ss_pred CCce-eeecccCCCchHHHHHHHHhccCCccccCc---chhHHHHHHHHHHHHHH------------------hCCCCCC
Q 040403 277 WPNV-IVQFEDFQSKWAFKLLQRYRYKYRMFNDDV---QGTAGVAVAGLLGAVRA------------------QGRSMID 334 (623)
Q Consensus 277 ~P~~-lIqfEDf~~~nAf~lL~ryr~~~~~FNDDi---QGTaaV~lAgll~A~r~------------------~g~~~~~ 334 (623)
.|+. +|+.--.+..| ..+-.--+..+++.|--- +.+|=-+++.+|+..|- .|..
T Consensus 60 ~~~Lk~I~~~~~G~d~-id~~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~--- 135 (525)
T TIGR01327 60 APKLKVIGRAGVGVDN-IDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTE--- 135 (525)
T ss_pred CCCceEEEECCcccch-hcHHHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCccc---
Confidence 3553 55544444443 222222233566666421 23455577777776653 2334
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLW 414 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~ 414 (623)
|.++++.|+|-|..|-.+|+.+... |+ +++.+|+.. ++ .... ++ ...
T Consensus 136 l~gktvgIiG~G~IG~~vA~~l~~f-----G~----------~V~~~d~~~---------~~--~~~~----~~---g~~ 182 (525)
T TIGR01327 136 LYGKTLGVIGLGRIGSIVAKRAKAF-----GM----------KVLAYDPYI---------SP--ERAE----QL---GVE 182 (525)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhC-----CC----------EEEEECCCC---------Ch--hHHH----hc---CCE
Confidence 8999999999999999999998764 74 577788741 11 0111 10 011
Q ss_pred CCCCHHHHHhhcCCcEEEec-c---CCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccCCcEEEecCC
Q 040403 415 EGASLVEVVQQVKPDVLLGL-S---AVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGS 490 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLIG~-S---~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~Grai~AtGs 490 (623)
...+|.|+++ +.|+++=. . ..-+.|+++.+..| .+..++.=.|.-.---|.---+|++ .|+.-.|.=-
T Consensus 183 ~~~~l~ell~--~aDvV~l~lPlt~~T~~li~~~~l~~m----k~ga~lIN~aRG~~vde~aL~~aL~--~g~i~gAaLD 254 (525)
T TIGR01327 183 LVDDLDELLA--RADFITVHTPLTPETRGLIGAEELAKM----KKGVIIVNCARGGIIDEAALYEALE--EGHVRAAALD 254 (525)
T ss_pred EcCCHHHHHh--hCCEEEEccCCChhhccCcCHHHHhcC----CCCeEEEEcCCCceeCHHHHHHHHH--cCCeeEEEEe
Confidence 1347999998 78887732 1 23478999999999 5667777777644323333334444 4665444211
Q ss_pred CCCccccCCCeeccCCCCccccchhHHHHHHHHcCCcccCHHHHHHHHHHHHcccC
Q 040403 491 PFKDVDLGNGHIGHCNQGNNMYLFPGVGLGTLLSGSRIISDGMLQAAAECLAEYMT 546 (623)
Q Consensus 491 PF~pv~~~~G~~~~p~Q~NN~yiFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v~ 546 (623)
=|.+-..++ ..--+..|+.+-|=+|-....+ -..|...+++.+-+...
T Consensus 255 Vf~~EP~~~---~pL~~~~nvi~TPHia~~t~e~-----~~~~~~~~~~ni~~~~~ 302 (525)
T TIGR01327 255 VFEKEPPTD---NPLFDLDNVIATPHLGASTREA-----QENVATQVAEQVLDALK 302 (525)
T ss_pred cCCCCCCCC---ChhhcCCCeEECCCccccHHHH-----HHHHHHHHHHHHHHHHc
Confidence 111110101 1112456888888877433322 23344445555555444
No 252
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=68.64 E-value=6.4 Score=42.46 Aligned_cols=32 Identities=28% Similarity=0.327 Sum_probs=29.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
||+++|+|.-|.-||+.|+.+ |+ ++|.++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~a-----GV---------g~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW-----GV---------RHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC---------CeEEEECCC
Confidence 689999999999999999886 96 789999986
No 253
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=68.47 E-value=7.6 Score=37.45 Aligned_cols=26 Identities=15% Similarity=0.360 Sum_probs=23.4
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHH
Q 040403 334 DFPKQKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 334 ~l~d~riv~~GAGsAg~GIA~ll~~~ 359 (623)
+|++.+|||+|+|..|.-.++.|+++
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ 35 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDT 35 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhC
Confidence 48999999999999999998888874
No 254
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=67.93 E-value=7 Score=40.35 Aligned_cols=106 Identities=16% Similarity=0.229 Sum_probs=58.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccC--CC------CCCChhhHHhHHHh-hhhc
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITE--DR------ENIDPDAKPFARKV-NEIS 409 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~--~r------~~l~~~~~~fA~~~-~~~~ 409 (623)
||+++|+|..|.-+++.|+.. |+ ++|.++|.+=+=.. +| +++...|..-|... .++.
T Consensus 1 kVlvvG~GGlG~eilk~La~~-----Gv---------g~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~n 66 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM-----GF---------GQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRN 66 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC---------CeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHC
Confidence 689999999999999999885 85 78999998733111 11 12222333332211 1111
Q ss_pred cc-c---cC-CC---CCH-HHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecC
Q 040403 410 RQ-G---LW-EG---ASL-VEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMS 463 (623)
Q Consensus 410 ~~-~---~~-~~---~~L-~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLS 463 (623)
++ . .. .. .++ .+-++ +.|++|.+.. ..-++..+-.+ +.....|+|.+=+
T Consensus 67 p~v~i~~~~~~i~~~~~~~~~f~~--~~DvVi~a~D--n~~aR~~ln~~-c~~~~iplI~~g~ 124 (234)
T cd01484 67 PNCKVVPYQNKVGPEQDFNDTFFE--QFHIIVNALD--NIIARRYVNGM-LIFLIVPLIESGT 124 (234)
T ss_pred CCCEEEEEeccCChhhhchHHHHh--CCCEEEECCC--CHHHHHHHHHH-HHHcCCCEEEEcc
Confidence 11 0 00 00 111 23455 6777776543 22345666666 6666777777644
No 255
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=67.74 E-value=6 Score=44.54 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=29.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
||+++|||..|+-+++.|+.+ |+.- -+ .++|.++|.+
T Consensus 1 kVlvVGaGGlGcE~lKnLal~-----Gv~~---g~-~G~I~IvD~D 37 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALM-----GVGT---GE-SGEITVTDMD 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CCCc---CC-CCeEEEECCC
Confidence 689999999999999999886 8721 00 2789999986
No 256
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=67.71 E-value=16 Score=38.03 Aligned_cols=113 Identities=18% Similarity=0.242 Sum_probs=67.7
Q ss_pred CCCCCCeeeEEeeccCCccccccCcCCCCcCCCCCCchhhhHhHHHHHHHHHH--hCCce-eeecccCCCchHHH-HHHH
Q 040403 223 GINPQRVLPIMIDVGTTNEKLLKDPLYLGLQEHRLDGDEYVSVIDEFMEAIFT--RWPNV-IVQFEDFQSKWAFK-LLQR 298 (623)
Q Consensus 223 GI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~Rv~g~~Y~~~vdefv~av~~--~~P~~-lIqfEDf~~~nAf~-lL~r 298 (623)
||+ .+|+.+.+| ++..+++ . +--.++|.+.+++ ..|++ ....+|| .++|+ ++++
T Consensus 20 ~I~---vvPl~I~~~--~~~y~D~-------------~--~i~~~~~y~~~~~~~~~p~TS~ps~~~~--~~~~~~l~~~ 77 (275)
T TIGR00762 20 GIT---VVPLTVIID--GKTYRDG-------------V--DITPEEFYEKLKESKELPKTSQPSPGEF--LELYEKLLEE 77 (275)
T ss_pred CCE---EEEEEEEEC--CEEeecC-------------C--CCCHHHHHHHHHhcCCCCCcCCCCHHHH--HHHHHHHHhC
Confidence 677 899999886 3333321 1 1125777777654 23543 4444555 23332 3333
Q ss_pred HhccCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHH--HHHhcCCCc
Q 040403 299 YRYKYRMFNDDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKT--MARMLGNNE 368 (623)
Q Consensus 299 yr~~~~~FNDDiQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~--m~~~~Gls~ 368 (623)
| +++-+++ =+-.|.|-.+.++...+. +.+.+|-++-..+++.|.+.++..+ |.++ |.|.
T Consensus 78 ~-~~vi~i~------iSs~lSgty~~a~~aa~~---~~~~~i~ViDS~~~s~~~g~~v~~a~~~~~~-G~s~ 138 (275)
T TIGR00762 78 G-DEVLSIH------LSSGLSGTYQSARQAAEM---VDEAKVTVIDSKSASMGLGLLVLEAAKLAEE-GKSL 138 (275)
T ss_pred C-CeEEEEE------cCCchhHHHHHHHHHHhh---CCCCCEEEECChHHHHHHHHHHHHHHHHHHc-CCCH
Confidence 3 2332222 223455556666666666 6677899999999999999888875 5556 9886
No 257
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=67.40 E-value=7.9 Score=38.78 Aligned_cols=35 Identities=20% Similarity=0.362 Sum_probs=29.1
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEcc
Q 040403 334 DFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDA 383 (623)
Q Consensus 334 ~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~ 383 (623)
+|++.++||+|+|..|.-.++.|+.+ | .+|++++.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~-----g----------a~V~VIs~ 41 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKY-----G----------AHIVVISP 41 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHC-----C----------CeEEEEcC
Confidence 48899999999999998888888774 6 46888865
No 258
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=67.21 E-value=7.9 Score=38.91 Aligned_cols=36 Identities=22% Similarity=0.415 Sum_probs=30.4
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 334 DFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 334 ~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+|++.|+||+|+|..|..-++.|+.+ | .+|.+++.+
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~-----g----------a~VtVvsp~ 41 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKA-----G----------AQLRVIAEE 41 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHC-----C----------CEEEEEcCC
Confidence 48899999999999999999988875 6 468888874
No 259
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=67.14 E-value=10 Score=36.10 Aligned_cols=104 Identities=23% Similarity=0.189 Sum_probs=57.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGA 417 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~ 417 (623)
.||-|+|.|..|.+||+.|... |. +++.+|+. ++..+.+... ......
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~-----g~----------~v~~~d~~----------~~~~~~~~~~-------g~~~~~ 49 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKA-----GY----------EVTVYDRS----------PEKAEALAEA-------GAEVAD 49 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHT-----TT----------EEEEEESS----------HHHHHHHHHT-------TEEEES
T ss_pred CEEEEEchHHHHHHHHHHHHhc-----CC----------eEEeeccc----------hhhhhhhHHh-------hhhhhh
Confidence 5899999999999999999764 73 57778863 1222334321 123467
Q ss_pred CHHHHHhhcCCcEEEeccCCCCCCCHHHHHH--cccCCCCCCEEEecCCCCCCCCCCHHHHhc
Q 040403 418 SLVEVVQQVKPDVLLGLSAVGGLFSKEVLEA--MRGSTSTRPAIFAMSNPTNNAECTPEEAFS 478 (623)
Q Consensus 418 ~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~--M~a~~~erPIIFaLSNPt~~~E~tpeda~~ 478 (623)
|+.|+++ +.+++|=+-.- +.=.++++.. +.....+..||.=+|+-+ +|.+-+-+-.
T Consensus 50 s~~e~~~--~~dvvi~~v~~-~~~v~~v~~~~~i~~~l~~g~iiid~sT~~--p~~~~~~~~~ 107 (163)
T PF03446_consen 50 SPAEAAE--QADVVILCVPD-DDAVEAVLFGENILAGLRPGKIIIDMSTIS--PETSRELAER 107 (163)
T ss_dssp SHHHHHH--HBSEEEE-SSS-HHHHHHHHHCTTHGGGS-TTEEEEE-SS----HHHHHHHHHH
T ss_pred hhhhHhh--cccceEeeccc-chhhhhhhhhhHHhhccccceEEEecCCcc--hhhhhhhhhh
Confidence 8999999 45777754211 1223555554 313345666777777655 5555443333
No 260
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=66.56 E-value=96 Score=33.32 Aligned_cols=108 Identities=16% Similarity=0.159 Sum_probs=64.8
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWE 415 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~ 415 (623)
.-.++.|+|+|.-|-.-++.+... . . .++|+++|+. .+....|+..-.++. .....
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~--~--~---------~~~v~V~~r~----------~~~~~~~~~~~~~~g-~~v~~ 182 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRV--F--D---------LEEVSVYCRT----------PSTREKFALRASDYE-VPVRA 182 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc--C--C---------CCEEEEECCC----------HHHHHHHHHHHHhhC-CcEEE
Confidence 458999999999876655444331 1 1 3789998883 122234443211110 00123
Q ss_pred CCCHHHHHhhcCCcEEEeccC-CCCCCCHHHHHHcccCCCCCCEEEecCCCC-CCCCCCHHHH
Q 040403 416 GASLVEVVQQVKPDVLLGLSA-VGGLFSKEVLEAMRGSTSTRPAIFAMSNPT-NNAECTPEEA 476 (623)
Q Consensus 416 ~~~L~e~V~~vkptvLIG~S~-~~g~Ft~evv~~M~a~~~erPIIFaLSNPt-~~~E~tpeda 476 (623)
..+..|+++ +.|++|-+.. ....|..++++ +..-|-++.-.+ .+.|+.++-.
T Consensus 183 ~~~~~eav~--~aDiVitaT~s~~P~~~~~~l~-------~g~~v~~vGs~~p~~~Eld~~~l 236 (325)
T TIGR02371 183 ATDPREAVE--GCDILVTTTPSRKPVVKADWVS-------EGTHINAIGADAPGKQELDPEIL 236 (325)
T ss_pred eCCHHHHhc--cCCEEEEecCCCCcEecHHHcC-------CCCEEEecCCCCcccccCCHHHH
Confidence 578999998 8999997653 33556666554 334577886544 3689998743
No 261
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=66.44 E-value=1.2e+02 Score=34.91 Aligned_cols=218 Identities=18% Similarity=0.156 Sum_probs=120.8
Q ss_pred CCce-eeecccCCCchHHHHHHHHhccCCccccCc---chhHHHHHHHHHHHHHHh------------------CCCCCC
Q 040403 277 WPNV-IVQFEDFQSKWAFKLLQRYRYKYRMFNDDV---QGTAGVAVAGLLGAVRAQ------------------GRSMID 334 (623)
Q Consensus 277 ~P~~-lIqfEDf~~~nAf~lL~ryr~~~~~FNDDi---QGTaaV~lAgll~A~r~~------------------g~~~~~ 334 (623)
.|+. +|+.--.+..| ..+-.--+..+++.|-.- +.+|=-+++-+|+..|-. |..
T Consensus 62 ~~~Lk~I~~~~~G~d~-id~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~--- 137 (526)
T PRK13581 62 AKNLKVIGRAGVGVDN-VDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVE--- 137 (526)
T ss_pred CCCCeEEEECCccccc-ccHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccc---
Confidence 4553 55544444433 222222233466666421 224555777777776641 233
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLW 414 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~ 414 (623)
|.++++.|+|.|..|..+|+.+... |+ +++.+|+.. +.. .... .. .
T Consensus 138 l~gktvgIiG~G~IG~~vA~~l~~f-----G~----------~V~~~d~~~---------~~~--~~~~--~g-----~- 183 (526)
T PRK13581 138 LYGKTLGIIGLGRIGSEVAKRAKAF-----GM----------KVIAYDPYI---------SPE--RAAQ--LG-----V- 183 (526)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhC-----CC----------EEEEECCCC---------Chh--HHHh--cC-----C-
Confidence 8899999999999999999998764 74 578888741 110 1110 01 1
Q ss_pred CCCCHHHHHhhcCCcEEEecc----CCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccCCcEEEecCC
Q 040403 415 EGASLVEVVQQVKPDVLLGLS----AVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGS 490 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLIG~S----~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~Grai~AtGs 490 (623)
...+|.|+++ +.|+++=+- ..-+.|+++.+..| .+..++.=.|.-.---|.---+|++ +|+.--|.=-
T Consensus 184 ~~~~l~ell~--~aDiV~l~lP~t~~t~~li~~~~l~~m----k~ga~lIN~aRG~~vde~aL~~aL~--~g~i~gAaLD 255 (526)
T PRK13581 184 ELVSLDELLA--RADFITLHTPLTPETRGLIGAEELAKM----KPGVRIINCARGGIIDEAALAEALK--SGKVAGAALD 255 (526)
T ss_pred EEEcHHHHHh--hCCEEEEccCCChHhhcCcCHHHHhcC----CCCeEEEECCCCceeCHHHHHHHHh--cCCeeEEEEe
Confidence 1227999998 788887432 12488999999999 5667888777644323333333433 4665433211
Q ss_pred CCCccccCCCeeccCCCCccccchhHHHHHHHHcCCcccCHHHHHHHHHHHHcccCcc
Q 040403 491 PFKDVDLGNGHIGHCNQGNNMYLFPGVGLGTLLSGSRIISDGMLQAAAECLAEYMTEE 548 (623)
Q Consensus 491 PF~pv~~~~G~~~~p~Q~NN~yiFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v~~~ 548 (623)
=|.+-..++. .--+..|+.+-|=+|-....+ ...|...+++.+......+
T Consensus 256 Vf~~EP~~~~---pL~~~~nvilTPHia~~t~e~-----~~~~~~~~~~ni~~~~~g~ 305 (526)
T PRK13581 256 VFEKEPPTDS---PLFELPNVVVTPHLGASTAEA-----QENVAIQVAEQVIDALRGG 305 (526)
T ss_pred cCCCCCCCCc---hhhcCCCeeEcCccccchHHH-----HHHHHHHHHHHHHHHHcCC
Confidence 1211111111 112345889999887433322 2445555666666555433
No 262
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=65.64 E-value=38 Score=33.12 Aligned_cols=35 Identities=23% Similarity=0.354 Sum_probs=23.6
Q ss_pred CCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+++.+++|.|| |..|..+++.++ ++ | -+++++++.
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~----~~-G----------~~V~~~~r~ 38 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFA----AE-G----------ARVVVTDRN 38 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHH----HC-C----------CEEEEEeCC
Confidence 77889999998 445555555544 43 6 358888875
No 263
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=65.44 E-value=6.3 Score=41.86 Aligned_cols=123 Identities=15% Similarity=0.181 Sum_probs=73.6
Q ss_pred EeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCC-CCCCChhhHHhHHHhhhhcccccCCCCCHH
Q 040403 342 VAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITED-RENIDPDAKPFARKVNEISRQGLWEGASLV 420 (623)
Q Consensus 342 ~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~-r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~ 420 (623)
|+|||..|..+|.+|+.. |+ ...|.|+|.+-=..++ .-||.+....+. +. ..-..+-.
T Consensus 1 iIGaG~VG~~~a~~l~~~-----~l--------~~el~L~Di~~~~~~g~a~Dl~~~~~~~~---~~-----~~i~~~~~ 59 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQ-----GI--------ADEIVLIDINKDKAEGEAMDLQHAASFLP---TP-----KKIRSGDY 59 (299)
T ss_pred CCCcCHHHHHHHHHHHhc-----CC--------CCEEEEEeCCCChhhHHHHHHHHhhcccC---CC-----eEEecCCH
Confidence 589999999999988753 65 2579999984111111 011221111110 00 01112335
Q ss_pred HHHhhcCCcEEEeccCCC---CC-----------CCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccCC--cE
Q 040403 421 EVVQQVKPDVLLGLSAVG---GL-----------FSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGD--NI 484 (623)
Q Consensus 421 e~V~~vkptvLIG~S~~~---g~-----------Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~G--ra 484 (623)
+.++ +.|++|=+.+.+ |- .=+++++.+ .+++..-+|+-.|||. ++...-+++++.= +-
T Consensus 60 ~~~~--daDivVitag~~rk~g~~R~dll~~N~~i~~~~~~~i-~~~~p~~~vivvsNP~---d~~t~~~~~~sg~p~~~ 133 (299)
T TIGR01771 60 SDCK--DADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPEV-VKSGFDGIFLVATNPV---DILTYVAWKLSGFPKNR 133 (299)
T ss_pred HHHC--CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHhCCCeEEEEeCCHH---HHHHHHHHHHhCCCHHH
Confidence 6677 899998666543 31 114677788 7789999999999998 5666677776521 34
Q ss_pred EEecCCC
Q 040403 485 IFASGSP 491 (623)
Q Consensus 485 i~AtGsP 491 (623)
+|.+|.-
T Consensus 134 viG~gt~ 140 (299)
T TIGR01771 134 VIGSGTV 140 (299)
T ss_pred EEeccch
Confidence 6777643
No 264
>PRK06046 alanine dehydrogenase; Validated
Probab=64.87 E-value=1e+02 Score=32.96 Aligned_cols=108 Identities=17% Similarity=0.225 Sum_probs=64.1
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWE 415 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~ 415 (623)
.-.++.|+|+|..|...++.+... .+ .++++++|++ .+..+.|++.-.+..++....
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~----~~---------i~~v~v~~r~----------~~~~~~~~~~~~~~~~~~v~~ 184 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEV----FD---------LEEVRVYDRT----------KSSAEKFVERMSSVVGCDVTV 184 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhh----CC---------ceEEEEECCC----------HHHHHHHHHHHHhhcCceEEE
Confidence 457999999999887776655432 13 3678989885 122334443211100000122
Q ss_pred CCCHHHHHhhcCCcEEEeccC-CCCCCCHHHHHHcccCCCCCCEEEec-CCCCCCCCCCHHHH
Q 040403 416 GASLVEVVQQVKPDVLLGLSA-VGGLFSKEVLEAMRGSTSTRPAIFAM-SNPTNNAECTPEEA 476 (623)
Q Consensus 416 ~~~L~e~V~~vkptvLIG~S~-~~g~Ft~evv~~M~a~~~erPIIFaL-SNPt~~~E~tpeda 476 (623)
..++.++++ .|+++-++. ....|..++++. .-.|-++ |+-..+.|+.++-.
T Consensus 185 ~~~~~~~l~---aDiVv~aTps~~P~~~~~~l~~-------g~hV~~iGs~~p~~~El~~~~~ 237 (326)
T PRK06046 185 AEDIEEACD---CDILVTTTPSRKPVVKAEWIKE-------GTHINAIGADAPGKQELDPEIL 237 (326)
T ss_pred eCCHHHHhh---CCEEEEecCCCCcEecHHHcCC-------CCEEEecCCCCCccccCCHHHH
Confidence 457888885 899887654 335577776653 1236666 44445799998743
No 265
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=64.82 E-value=8.2 Score=41.22 Aligned_cols=32 Identities=34% Similarity=0.520 Sum_probs=28.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
||+++|+|.-|.-+++.|+.. |+ ++|.++|.+
T Consensus 1 kVlVVGaGGlG~eilknLal~-----Gv---------g~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALS-----GF---------RNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC---------CeEEEECCC
Confidence 689999999999999999886 96 689999987
No 266
>PRK07589 ornithine cyclodeaminase; Validated
Probab=64.73 E-value=1.1e+02 Score=33.50 Aligned_cols=108 Identities=18% Similarity=0.253 Sum_probs=66.6
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWE 415 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~ 415 (623)
.-.++.|+|+|.-+..-++.++.. .. .++|+++|+. .+....|++.-.. .++....
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~v----r~---------i~~V~v~~r~----------~~~a~~~~~~~~~-~~~~v~~ 183 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKAL----LG---------IEEIRLYDID----------PAATAKLARNLAG-PGLRIVA 183 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHh----CC---------ceEEEEEeCC----------HHHHHHHHHHHHh-cCCcEEE
Confidence 357899999998887776666653 12 2678888773 2233455532211 0111123
Q ss_pred CCCHHHHHhhcCCcEEEeccCCC---CCCCHHHHHHcccCCCCCCEEEec-CCCCCCCCCCHHHH
Q 040403 416 GASLVEVVQQVKPDVLLGLSAVG---GLFSKEVLEAMRGSTSTRPAIFAM-SNPTNNAECTPEEA 476 (623)
Q Consensus 416 ~~~L~e~V~~vkptvLIG~S~~~---g~Ft~evv~~M~a~~~erPIIFaL-SNPt~~~E~tpeda 476 (623)
..+++++|+ +.||++.+.+.. -+|..++++. .. -|-++ |+--.+-|+.++-.
T Consensus 184 ~~~~~~av~--~ADIIvtaT~S~~~~Pvl~~~~lkp--G~-----hV~aIGs~~p~~~Eld~~~l 239 (346)
T PRK07589 184 CRSVAEAVE--GADIITTVTADKTNATILTDDMVEP--GM-----HINAVGGDCPGKTELHPDIL 239 (346)
T ss_pred eCCHHHHHh--cCCEEEEecCCCCCCceecHHHcCC--Cc-----EEEecCCCCCCcccCCHHHH
Confidence 578999999 899999876432 4577777753 22 24444 45445789998753
No 267
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=64.39 E-value=8.2 Score=39.31 Aligned_cols=34 Identities=24% Similarity=0.405 Sum_probs=24.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCc
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGL 386 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GL 386 (623)
-.|+|+|||.||+..|..|... |+ ++.++|++.-
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~-----G~----------~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARA-----GI----------DVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHT-----TC----------EEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----cc----------ccccchhccc
Confidence 4799999999999999888875 85 3666666543
No 268
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=64.25 E-value=8.1 Score=38.91 Aligned_cols=31 Identities=23% Similarity=0.430 Sum_probs=24.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+|+|+|||.||+..|..|... |+ ++.++|+.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~-----g~----------~v~lie~~ 32 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARA-----NL----------KTLIIEGM 32 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHC-----CC----------CEEEEecc
Confidence 689999999999999887653 73 47788864
No 269
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=64.19 E-value=40 Score=32.06 Aligned_cols=25 Identities=12% Similarity=0.256 Sum_probs=19.6
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHH
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMA 361 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~ 361 (623)
+..||.|+|.|+.+. +|..+...|.
T Consensus 10 ~a~rI~~~G~G~S~~-~A~~~a~~~~ 34 (154)
T TIGR00441 10 AGGKVLICGNGGSAC-DAQHFAAELT 34 (154)
T ss_pred CCCEEEEEeCcHHHH-HHHHHHHHhh
Confidence 568999999999884 7777766543
No 270
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=63.67 E-value=2.3e+02 Score=31.70 Aligned_cols=124 Identities=16% Similarity=0.130 Sum_probs=62.8
Q ss_pred HHHHhhc------CCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCC
Q 040403 420 VEVVQQV------KPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGSPFK 493 (623)
Q Consensus 420 ~e~V~~v------kptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~Grai~AtGsPF~ 493 (623)
.|+.+++ .||.+|-+.|.||...= +.... .. .+.|=|... -|....--+++.+-.++.|+.-+..|+-.-
T Consensus 213 ~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~G-i~~~f-~~-~~~v~iigV-E~~G~~~~~~~~~a~l~~g~~g~~~g~~~~ 288 (397)
T PRK04346 213 EEAKAQILEKEGRLPDAVVACVGGGSNAIG-IFHPF-ID-DESVRLIGV-EAAGKGLETGKHAATLTKGRPGVLHGAKTY 288 (397)
T ss_pred HHHHHHHHHhhCCCCCEEEEecCccHhHHH-HHHHH-hh-CCCCeEEEE-ecCCCccccccccchhhcCCeeeeccccce
Confidence 4666655 69999987766544221 22222 11 223333322 122111123444555666666555554211
Q ss_pred ccccCCCeeccCCCCccccc------hhHHHHHHH--H-c---CCcccCHHHHHHHHHHHHcccCcccccCCccccCCCC
Q 040403 494 DVDLGNGHIGHCNQGNNMYL------FPGVGLGTL--L-S---GSRIISDGMLQAAAECLAEYMTEEEVVKGKIYPSISS 561 (623)
Q Consensus 494 pv~~~~G~~~~p~Q~NN~yi------FPGiglG~~--~-~---~a~~Itd~m~~aAA~aLA~~v~~~~l~~g~l~P~~~~ 561 (623)
... +..+|.-..+- +||+|-... . + ....|||+-.++|.+.|+.. .-|+|-++.
T Consensus 289 ~~~------~~~g~~~~~~sis~gL~~pgvgp~~~~l~~~~~~~~v~VtD~eal~a~~~L~~~--------eGIi~~~es 354 (397)
T PRK04346 289 LLQ------DEDGQILETHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDDEALEAFQLLSRL--------EGIIPALES 354 (397)
T ss_pred ecc------cCCCccCCCceeeccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHH--------cCCEeccHH
Confidence 111 12233333333 478764332 1 1 33569999999999999864 236677665
No 271
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=63.49 E-value=9.1 Score=41.21 Aligned_cols=33 Identities=33% Similarity=0.402 Sum_probs=27.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
.+|+|+|||-+|+.+|..|.+. | .++.++|++.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-----g----------~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-----G----------YQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-----C----------CeEEEEeCCC
Confidence 4899999999999999998874 7 4688888864
No 272
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=63.23 E-value=56 Score=34.85 Aligned_cols=107 Identities=13% Similarity=0.149 Sum_probs=62.4
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEG 416 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~ 416 (623)
-.++.|+|+|.=|..-++.++.. + . .++|.++|+. .+....|+..-.+..+......
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v--~--~---------i~~v~v~~r~----------~~~a~~f~~~~~~~~~~~v~~~ 173 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASV--Y--N---------PKRIRVYSRN----------FDHARAFAERFSKEFGVDIRPV 173 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhc--C--C---------CCEEEEECCC----------HHHHHHHHHHHHHhcCCcEEEe
Confidence 47999999999887777666653 1 3 3678888873 2222445432111000001235
Q ss_pred CCHHHHHhhcCCcEEEeccCC-CCCCCHHHHHHcccCCCCCCEEEec-CCCCCCCCCCHHH
Q 040403 417 ASLVEVVQQVKPDVLLGLSAV-GGLFSKEVLEAMRGSTSTRPAIFAM-SNPTNNAECTPEE 475 (623)
Q Consensus 417 ~~L~e~V~~vkptvLIG~S~~-~g~Ft~evv~~M~a~~~erPIIFaL-SNPt~~~E~tped 475 (623)
.+++|+++ ..||++-+.+. ...|..++++. . --|-++ |+--.+.|+.++-
T Consensus 174 ~~~~eav~--~aDIV~taT~s~~P~~~~~~l~p--g-----~hV~aiGs~~p~~~El~~~~ 225 (301)
T PRK06407 174 DNAEAALR--DADTITSITNSDTPIFNRKYLGD--E-----YHVNLAGSNYPNRREAEHSV 225 (301)
T ss_pred CCHHHHHh--cCCEEEEecCCCCcEecHHHcCC--C-----ceEEecCCCCCCcccCCHHH
Confidence 78999998 99999976542 34566666652 1 124443 3322457777764
No 273
>PLN02268 probable polyamine oxidase
Probab=62.85 E-value=4.8 Score=43.76 Aligned_cols=42 Identities=19% Similarity=0.303 Sum_probs=29.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccC----eEEEEccCCc
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARS----QFWVVDAKGL 386 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~----~i~lvD~~GL 386 (623)
+|+|+|||-||+..|..|.+. |.+. ..=||+. |++-....|.
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~-----g~~v-~vlEa~~r~GGri~t~~~~g~ 47 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDA-----SFKV-TLLESRDRIGGRVHTDYSFGF 47 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhC-----CCeE-EEEeCCCCCCceeeecCcCCc
Confidence 799999999999999999774 7653 2256655 3554444454
No 274
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=62.60 E-value=1.2e+02 Score=33.21 Aligned_cols=126 Identities=14% Similarity=0.161 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChh
Q 040403 318 VAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPD 397 (623)
Q Consensus 318 lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~ 397 (623)
.|+.++|=.+..+. --++.|+|+|.-+-. .+++|....++ ++|++.|+. ++.
T Consensus 116 AasavAa~~LA~~d-----a~~laiIGaG~qA~~----ql~a~~~v~~~---------~~I~i~~r~----------~~~ 167 (330)
T COG2423 116 AASAVAAKYLARKD-----ASTLAIIGAGAQART----QLEALKAVRDI---------REIRVYSRD----------PEA 167 (330)
T ss_pred HHHHHHHHHhccCC-----CcEEEEECCcHHHHH----HHHHHHhhCCc---------cEEEEEcCC----------HHH
Confidence 34555555555544 358999999976544 45555443343 668887774 334
Q ss_pred hHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccC-CCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHH
Q 040403 398 AKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSA-VGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEA 476 (623)
Q Consensus 398 ~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~-~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda 476 (623)
-+.|++.-...-........|++++|+ +.|+++.++. ..-.|+.++|+.= -=|.-.=||+-.+-|+.+|-.
T Consensus 168 ~e~~a~~l~~~~~~~v~a~~s~~~av~--~aDiIvt~T~s~~Pil~~~~l~~G------~hI~aiGad~p~k~Eld~e~l 239 (330)
T COG2423 168 AEAFAARLRKRGGEAVGAADSAEEAVE--GADIVVTATPSTEPVLKAEWLKPG------THINAIGADAPGKRELDPEVL 239 (330)
T ss_pred HHHHHHHHHhhcCccceeccCHHHHhh--cCCEEEEecCCCCCeecHhhcCCC------cEEEecCCCCcccccCCHHHH
Confidence 455653211100000235688999999 9999999754 3456777777621 113334467777899999876
Q ss_pred hcc
Q 040403 477 FSI 479 (623)
Q Consensus 477 ~~w 479 (623)
.+.
T Consensus 240 ~ra 242 (330)
T COG2423 240 ARA 242 (330)
T ss_pred Hhc
Confidence 664
No 275
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=62.36 E-value=31 Score=43.06 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=20.8
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHH
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~ 359 (623)
+.--+|||.|+|..|.|-++.+...
T Consensus 201 v~P~~vVi~G~G~Vg~gA~~i~~~l 225 (1042)
T PLN02819 201 ICPLVFVFTGSGNVSQGAQEIFKLL 225 (1042)
T ss_pred CCCeEEEEeCCchHHHHHHHHHhhc
Confidence 3358999999999999999887653
No 276
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=62.35 E-value=39 Score=32.49 Aligned_cols=22 Identities=45% Similarity=0.668 Sum_probs=17.9
Q ss_pred CCcEEEeccCCCCCCCHHHHHHcc
Q 040403 427 KPDVLLGLSAVGGLFSKEVLEAMR 450 (623)
Q Consensus 427 kptvLIG~S~~~g~Ft~evv~~M~ 450 (623)
+-|++|++|..| -|+++++.++
T Consensus 101 ~~Dv~I~iS~SG--~t~~~i~~~~ 122 (177)
T cd05006 101 PGDVLIGISTSG--NSPNVLKALE 122 (177)
T ss_pred CCCEEEEEeCCC--CCHHHHHHHH
Confidence 679999999544 5799999994
No 277
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=61.84 E-value=30 Score=40.79 Aligned_cols=139 Identities=19% Similarity=0.242 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhCCceeeecccCCCc----hHHHHHHHHhccCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEE
Q 040403 266 IDEFMEAIFTRWPNVIVQFEDFQSK----WAFKLLQRYRYKYRMFNDDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIV 341 (623)
Q Consensus 266 vdefv~av~~~~P~~lIqfEDf~~~----nAf~lL~ryr~~~~~FNDDiQGTaaV~lAgll~A~r~~g~~~~~l~d~riv 341 (623)
-++|++.++.++-+..| ||.+.. =--.+++||..+|--|+-...- ++.|.. . .++.||+
T Consensus 71 ~~~V~Eli~~L~~nGFV--rDv~~~~p~~L~~a~lERYaaqI~F~~~fs~s----------~~~rF~--~---qR~akVl 133 (637)
T TIGR03693 71 QKRVFEIGEILYKNGFV--RDVSQDAPHELESALLDRYAAQIEFIEADADS----------GALKFE--L---SRNAKIL 133 (637)
T ss_pred HHHHHHHHHHHHhCCce--eecccccCCCCCHHHHHHHHHHHHHHHHhccC----------chhhhh--h---hhcccEE
Confidence 57778888888877655 354321 1234789999987666544321 222221 1 3689999
Q ss_pred EeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhh-h--cccccCCCCC
Q 040403 342 VAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNE-I--SRQGLWEGAS 418 (623)
Q Consensus 342 ~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~-~--~~~~~~~~~~ 418 (623)
++|.|..|.-+.-.|+.. |+ .+|..+|.+=..+. ...+.+. ...|++.++ . ..-+.....+
T Consensus 134 VlG~Gg~~s~lv~sL~~s-----G~---------~~I~~vd~D~v~SN-lnRIgEl-~e~A~~~n~~v~v~~i~~~~~~d 197 (637)
T TIGR03693 134 AAGSGDFLTKLVRSLIDS-----GF---------PRFHAIVTDAEEHA-LDRIHEL-AEIAEETDDALLVQEIDFAEDQH 197 (637)
T ss_pred EEecCchHHHHHHHHHhc-----CC---------CcEEEEeccccchh-hhHHHHH-HHHHHHhCCCCceEeccCCcchh
Confidence 999998887776666653 96 56877766534221 1102222 444443111 0 0001123456
Q ss_pred HHHHHhhcCCcEEEeccCCCC
Q 040403 419 LVEVVQQVKPDVLLGLSAVGG 439 (623)
Q Consensus 419 L~e~V~~vkptvLIG~S~~~g 439 (623)
+.++++ .-|++|=+|..+.
T Consensus 198 l~ev~~--~~DiVi~vsDdy~ 216 (637)
T TIGR03693 198 LHEAFE--PADWVLYVSDNGD 216 (637)
T ss_pred HHHhhc--CCcEEEEECCCCC
Confidence 777777 5678887775544
No 278
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=61.75 E-value=30 Score=39.31 Aligned_cols=98 Identities=17% Similarity=0.165 Sum_probs=61.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGAS 418 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~ 418 (623)
.|-|+|.|..|..+|..|... |. +++++|+. .+.-+.++.....-. ......+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~-----G~----------~V~v~drt----------~~~~~~l~~~~~~g~--~~~~~~s 53 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH-----GF----------TVSVYNRT----------PEKTDEFLAEHAKGK--KIVGAYS 53 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc-----CC----------eEEEEeCC----------HHHHHHHHhhccCCC--CceecCC
Confidence 378999999999999999774 73 47777763 111122321100000 0123457
Q ss_pred HHHHHhhc-CCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCC
Q 040403 419 LVEVVQQV-KPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSN 464 (623)
Q Consensus 419 L~e~V~~v-kptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSN 464 (623)
+.|+++.+ +|+++| ++-.+|..+++|++.+.....+.-||.=.||
T Consensus 54 ~~e~v~~l~~~dvIi-l~v~~~~~v~~Vi~~l~~~L~~g~iIID~gn 99 (467)
T TIGR00873 54 IEEFVQSLERPRKIM-LMVKAGAPVDAVINQLLPLLEKGDIIIDGGN 99 (467)
T ss_pred HHHHHhhcCCCCEEE-EECCCcHHHHHHHHHHHhhCCCCCEEEECCC
Confidence 88888654 688666 3334567778888877333467789999988
No 279
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=61.73 E-value=5.7 Score=40.63 Aligned_cols=36 Identities=22% Similarity=0.365 Sum_probs=32.0
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
|++-|++++|+|.-|.-++..|+.+ |+ ++++++|.+
T Consensus 28 l~~s~vlvvG~GglG~~~~~~la~a-----Gv---------g~l~i~D~d 63 (254)
T COG0476 28 LKDSRVLVVGAGGLGSPAAKYLALA-----GV---------GKLTIVDFD 63 (254)
T ss_pred HhhCCEEEEecChhHHHHHHHHHHc-----CC---------CeEEEEcCC
Confidence 8889999999999999999998886 85 669999986
No 280
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=61.56 E-value=29 Score=43.96 Aligned_cols=119 Identities=21% Similarity=0.243 Sum_probs=73.1
Q ss_pred HHHHHHHHHhCCc-eeeecccCCCc-------hHHHHHHHHhccCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCc
Q 040403 267 DEFMEAIFTRWPN-VIVQFEDFQSK-------WAFKLLQRYRYKYRMFNDDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQ 338 (623)
Q Consensus 267 defv~av~~~~P~-~lIqfEDf~~~-------nAf~lL~ryr~~~~~FNDDiQGTaaV~lAgll~A~r~~g~~~~~l~d~ 338 (623)
-+.+++..+.+++ .+|| |++.. +-+++..+|.-.+|+.+=|-+|.+- + .+.
T Consensus 441 ~~ViEaaLk~~~G~~IIN--SIs~~~~~~~~~~~~~l~~kyga~vV~m~~de~G~~~---------------t----~e~ 499 (1229)
T PRK09490 441 WEVIEAGLKCIQGKGIVN--SISLKEGEEKFIEHARLVRRYGAAVVVMAFDEQGQAD---------------T----RER 499 (1229)
T ss_pred HHHHHHHHhhcCCCCEEE--eCCCCCCCccHHHHHHHHHHhCCCEEEEecCCCCCCC---------------C----HHH
Confidence 4778888888866 4666 55542 4678889999888888877666541 1 223
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGAS 418 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~ 418 (623)
| +-||+.+.+.+..+.|++. ++|+ +|.- +..--++..+| ..++..
T Consensus 500 r----------~~ia~r~~~~~~~~~Gi~~-------~dIi-~Dpl--v~~v~t~~ee~-~~~~~~-------------- 544 (1229)
T PRK09490 500 K----------IEICKRAYDILTEEVGFPP-------EDII-FDPN--IFAVATGIEEH-NNYAVD-------------- 544 (1229)
T ss_pred H----------HHHHHHHHHHHHHHcCCCH-------HHEE-EcCC--cceeecChHHH-HHHHHH--------------
Confidence 3 3788888888776569986 5665 7773 32211112222 233321
Q ss_pred HHHHHhhc-----CCcEEEeccCCCCCC
Q 040403 419 LVEVVQQV-----KPDVLLGLSAVGGLF 441 (623)
Q Consensus 419 L~e~V~~v-----kptvLIG~S~~~g~F 441 (623)
..|+|+.+ +..+..|+|...=.|
T Consensus 545 ~leair~ik~~~P~~~~~~GlSNiSFgl 572 (1229)
T PRK09490 545 FIEATRWIKQNLPHAKISGGVSNVSFSF 572 (1229)
T ss_pred HHHHHHHHHHHCCCCcEEEeeccccccC
Confidence 33444422 345899999977556
No 281
>PRK06823 ornithine cyclodeaminase; Validated
Probab=61.27 E-value=78 Score=34.04 Aligned_cols=109 Identities=14% Similarity=0.183 Sum_probs=66.0
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWE 415 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~ 415 (623)
.-.++.++|+|.-|...++.++.. .+ .++|+++|+. .+....|+..-... ++....
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v------~~-------i~~v~v~~r~----------~~~a~~~~~~~~~~-~~~v~~ 182 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNV------TD-------CRQLWVWGRS----------ETALEEYRQYAQAL-GFAVNT 182 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhc------CC-------CCEEEEECCC----------HHHHHHHHHHHHhc-CCcEEE
Confidence 357999999999888877766652 22 2778888873 22233455321110 111223
Q ss_pred CCCHHHHHhhcCCcEEEeccC-CCCCCCHHHHHHcccCCCCCCEEEecCCCC-CCCCCCHHHHh
Q 040403 416 GASLVEVVQQVKPDVLLGLSA-VGGLFSKEVLEAMRGSTSTRPAIFAMSNPT-NNAECTPEEAF 477 (623)
Q Consensus 416 ~~~L~e~V~~vkptvLIG~S~-~~g~Ft~evv~~M~a~~~erPIIFaLSNPt-~~~E~tpeda~ 477 (623)
..+.+++|+ +.|+++-+.+ ..-.|..++++. .-.|-+...-+ .+.|+.++-..
T Consensus 183 ~~~~~~av~--~ADIV~taT~s~~P~~~~~~l~~-------G~hi~~iGs~~p~~~Eld~~~l~ 237 (315)
T PRK06823 183 TLDAAEVAH--AANLIVTTTPSREPLLQAEDIQP-------GTHITAVGADSPGKQELDAELVA 237 (315)
T ss_pred ECCHHHHhc--CCCEEEEecCCCCceeCHHHcCC-------CcEEEecCCCCcccccCCHHHHh
Confidence 578999998 9999997644 335566666542 23366665322 35788876543
No 282
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=60.71 E-value=7.7 Score=40.76 Aligned_cols=32 Identities=34% Similarity=0.757 Sum_probs=27.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
..|-|+|||-.|-|||+....+ |+ ++|++|++
T Consensus 12 ~~V~ivGaG~MGSGIAQv~a~s-----g~----------~V~l~d~~ 43 (298)
T KOG2304|consen 12 KNVAIVGAGQMGSGIAQVAATS-----GL----------NVWLVDAN 43 (298)
T ss_pred cceEEEcccccchhHHHHHHhc-----CC----------ceEEecCC
Confidence 4688999999999999998886 85 58999984
No 283
>PRK07236 hypothetical protein; Provisional
Probab=60.38 E-value=13 Score=39.86 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=26.8
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhh
Q 040403 334 DFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFD 372 (623)
Q Consensus 334 ~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~e 372 (623)
+....+|+|+|||.||+..|..|... |++..-+|
T Consensus 3 ~~~~~~ViIVGaG~aGl~~A~~L~~~-----G~~v~v~E 36 (386)
T PRK07236 3 HMSGPRAVVIGGSLGGLFAALLLRRA-----GWDVDVFE 36 (386)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhC-----CCCEEEEe
Confidence 45678999999999999999988874 87643333
No 284
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=60.30 E-value=28 Score=35.37 Aligned_cols=36 Identities=28% Similarity=0.294 Sum_probs=24.0
Q ss_pred CCcEEEeccCCCCCCCHHHHHHccc-CCCCCCEEEecCCC
Q 040403 427 KPDVLLGLSAVGGLFSKEVLEAMRG-STSTRPAIFAMSNP 465 (623)
Q Consensus 427 kptvLIG~S~~~g~Ft~evv~~M~a-~~~erPIIFaLSNP 465 (623)
+-|++|++|-. | -|+++++.|+. +...-||| +++|.
T Consensus 47 ~~d~~i~iS~s-G-~t~~~~~~~~~a~~~g~~ii-~iT~~ 83 (268)
T TIGR00393 47 PNDVVLMISYS-G-ESLELLNLIPHLKRLSHKII-AFTGS 83 (268)
T ss_pred CCCEEEEEeCC-C-CCHHHHHHHHHHHHcCCcEE-EEECC
Confidence 56899999953 3 68999999953 33344544 45553
No 285
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=60.22 E-value=12 Score=40.33 Aligned_cols=106 Identities=17% Similarity=0.206 Sum_probs=59.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCC--C------CCCChhhHHhHHHh-hhhc
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITED--R------ENIDPDAKPFARKV-NEIS 409 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~--r------~~l~~~~~~fA~~~-~~~~ 409 (623)
||+++|+|.-|.-+++.|+.+ |+ ++|.++|.+=+=..+ | +++...|..-|... .++.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~-----Gv---------g~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lN 66 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLT-----GF---------GEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFN 66 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHh-----cC---------CeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHC
Confidence 689999999999999999876 95 789999986322111 1 11222222222211 1111
Q ss_pred ccc----c-CCCC---CHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecC
Q 040403 410 RQG----L-WEGA---SLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMS 463 (623)
Q Consensus 410 ~~~----~-~~~~---~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLS 463 (623)
++. . .... ...+-++ +.|++|.+..... ++..|-.+ +.....|.|.+-+
T Consensus 67 p~v~V~~~~~~i~~~~~~~~f~~--~~DvVv~a~Dn~~--ar~~in~~-c~~~~ip~I~~gt 123 (312)
T cd01489 67 PNVKIVAYHANIKDPDFNVEFFK--QFDLVFNALDNLA--ARRHVNKM-CLAADVPLIESGT 123 (312)
T ss_pred CCCeEEEEeccCCCccchHHHHh--cCCEEEECCCCHH--HHHHHHHH-HHHCCCCEEEEec
Confidence 110 0 0111 1234455 6778877653222 35567777 7777888887644
No 286
>PRK08507 prephenate dehydrogenase; Validated
Probab=60.02 E-value=54 Score=33.85 Aligned_cols=33 Identities=27% Similarity=0.270 Sum_probs=26.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
||.|+|.|..|..+|..+... |.. .+++.+|++
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~-----g~~--------~~v~~~d~~ 34 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEK-----GLI--------SKVYGYDHN 34 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhc-----CCC--------CEEEEEcCC
Confidence 799999999999999888764 742 368888874
No 287
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=59.91 E-value=14 Score=38.87 Aligned_cols=107 Identities=10% Similarity=0.036 Sum_probs=55.8
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCC-CCCChhhHHhHHHhhhhccccc
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDR-ENIDPDAKPFARKVNEISRQGL 413 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r-~~l~~~~~~fA~~~~~~~~~~~ 413 (623)
-...||.|+|+|+-|..+|-.|.++ |. ++.++++... ..-+ ..+.- +... ....+.+ .
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~-----g~----------~V~~~~r~~~-~~~~~~g~~~-~~~~--~~~~~~~--~ 61 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARA-----GF----------DVHFLLRSDY-EAVRENGLQV-DSVH--GDFHLPP--V 61 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHC-----CC----------eEEEEEeCCH-HHHHhCCeEE-EeCC--CCeeecC--c
Confidence 3457999999999999999888764 63 3455555321 0000 00000 0000 0000000 0
Q ss_pred CCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCC
Q 040403 414 WEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTN 467 (623)
Q Consensus 414 ~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~ 467 (623)
....+. +.+. .+|++| ++. +..-++++++.++....+..+|+.|-|=-.
T Consensus 62 ~~~~~~-~~~~--~~D~vi-lav-K~~~~~~~~~~l~~~~~~~~~iv~lqNG~~ 110 (313)
T PRK06249 62 QAYRSA-EDMP--PCDWVL-VGL-KTTANALLAPLIPQVAAPDAKVLLLQNGLG 110 (313)
T ss_pred eEEcch-hhcC--CCCEEE-EEe-cCCChHhHHHHHhhhcCCCCEEEEecCCCC
Confidence 001112 2233 567776 442 333468888888444556778888999764
No 288
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=59.80 E-value=30 Score=36.34 Aligned_cols=82 Identities=17% Similarity=0.303 Sum_probs=51.7
Q ss_pred CCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhh-hcccc
Q 040403 335 FPKQKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNE-ISRQG 412 (623)
Q Consensus 335 l~d~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~-~~~~~ 412 (623)
+...+||++.. ++.++|- +..+|+.- |+++ +++|+.+ ..+++.-..+|....+ +.+
T Consensus 2 ~~~i~iVLVep~~~gNIG~---vARaMKNf-Gl~e---------L~LV~Pr-------~~~~eeA~a~A~gA~dile~-- 59 (242)
T COG0565 2 LENIRIVLVEPSHPGNIGS---VARAMKNF-GLSE---------LRLVNPR-------AGLDEEARALAAGARDILEN-- 59 (242)
T ss_pred CCccEEEEEcCCCCccHHH---HHHHHHhC-Ccce---------EEEECCC-------CCCCHHHHHHhccchhhhcc--
Confidence 34567777764 4555654 35677775 9864 8888875 2244444444432222 111
Q ss_pred cCCCCCHHHHHhhcCCcEEEeccCCCCC
Q 040403 413 LWEGASLVEVVQQVKPDVLLGLSAVGGL 440 (623)
Q Consensus 413 ~~~~~~L~e~V~~vkptvLIG~S~~~g~ 440 (623)
..-..||+|+|. +.+.+||+|+....
T Consensus 60 A~i~~tL~eAl~--d~~~v~aTtar~r~ 85 (242)
T COG0565 60 AKIVDTLEEALA--DCDLVVATTARSRD 85 (242)
T ss_pred CeeecCHHHHhc--CCCEEEEeccccCc
Confidence 345689999999 99999999965433
No 289
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=59.50 E-value=12 Score=39.27 Aligned_cols=32 Identities=28% Similarity=0.558 Sum_probs=26.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.||.|+|||..|.|||.+++.+ |. +++++|..
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~-----G~----------~V~l~d~~ 37 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA-----GV----------DVLVFETT 37 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC-----CC----------EEEEEECC
Confidence 3899999999999999988875 74 46777763
No 290
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=59.49 E-value=13 Score=37.81 Aligned_cols=33 Identities=24% Similarity=0.459 Sum_probs=27.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCc
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGL 386 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GL 386 (623)
.|+|+|||-+|+.+|..|.+. | .++.++|+..+
T Consensus 1 DvvIIGaGi~G~~~A~~La~~-----G----------~~V~l~e~~~~ 33 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARR-----G----------HSVTLLERGDI 33 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHT-----T----------SEEEEEESSST
T ss_pred CEEEECcCHHHHHHHHHHHHC-----C----------CeEEEEeeccc
Confidence 389999999999999988873 7 47899999833
No 291
>PRK13938 phosphoheptose isomerase; Provisional
Probab=59.45 E-value=34 Score=34.37 Aligned_cols=101 Identities=17% Similarity=0.134 Sum_probs=51.6
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWE 415 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~ 415 (623)
.+.||.|+|.|..| -+|..+...|....+... .+-..+.++.....++.- .+-.++-..|++.
T Consensus 44 ~g~rI~i~G~G~S~-~~A~~fa~~L~~~~~~~r----~~lg~~~l~~~~~~~~a~-~nd~~~~~~~~~~----------- 106 (196)
T PRK13938 44 AGARVFMCGNGGSA-ADAQHFAAELTGHLIFDR----PPLGAEALHANSSHLTAV-ANDYDYDTVFARA----------- 106 (196)
T ss_pred CCCEEEEEeCcHHH-HHHHHHHHHcCCCccCCc----CccceEEEeCChHHHHHh-hccccHHHHHHHH-----------
Confidence 56899999999998 677777776642111110 011223332222121110 0011122333321
Q ss_pred CCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcc-cCCCCCCEEE
Q 040403 416 GASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMR-GSTSTRPAIF 460 (623)
Q Consensus 416 ~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~-a~~~erPIIF 460 (623)
+.-.++ +-|++|++|..| -|+++++.++ ++...-|+|.
T Consensus 107 ---~~~~~~--~~DllI~iS~SG--~t~~vi~a~~~Ak~~G~~vI~ 145 (196)
T PRK13938 107 ---LEGSAR--PGDTLFAISTSG--NSMSVLRAAKTARELGVTVVA 145 (196)
T ss_pred ---HHhcCC--CCCEEEEEcCCC--CCHHHHHHHHHHHHCCCEEEE
Confidence 122223 679999999654 4799999984 3333444444
No 292
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=58.99 E-value=13 Score=38.67 Aligned_cols=33 Identities=27% Similarity=0.424 Sum_probs=27.1
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
-+||.|+|+|..|.+||..+... |. +++++|++
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~-----G~----------~V~l~d~~ 36 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALA-----GY----------DVLLNDVS 36 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-----CC----------eEEEEeCC
Confidence 36899999999999999998764 73 57888864
No 293
>PRK08618 ornithine cyclodeaminase; Validated
Probab=58.96 E-value=93 Score=33.31 Aligned_cols=105 Identities=20% Similarity=0.262 Sum_probs=57.7
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhh-hhcccccC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVN-EISRQGLW 414 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~-~~~~~~~~ 414 (623)
...+++|+|+|..|-.++..+... .|+ ++|.++|+. .+....|++.-. .+. ....
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~----~~~---------~~v~v~~r~----------~~~a~~~~~~~~~~~~-~~~~ 181 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAV----RDI---------ERVRVYSRT----------FEKAYAFAQEIQSKFN-TEIY 181 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc----CCc---------cEEEEECCC----------HHHHHHHHHHHHHhcC-CcEE
Confidence 457899999999987776655442 143 678888884 112233442110 000 0011
Q ss_pred CCCCHHHHHhhcCCcEEEeccCCC-CCCCHHHHHHcccCCCCCCEEEec-CCCCCCCCCCHH
Q 040403 415 EGASLVEVVQQVKPDVLLGLSAVG-GLFSKEVLEAMRGSTSTRPAIFAM-SNPTNNAECTPE 474 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLIG~S~~~-g~Ft~evv~~M~a~~~erPIIFaL-SNPt~~~E~tpe 474 (623)
...+++++++ +.|++|-++..+ -.|+ +.++ +---|.++ |+--.+.|+.++
T Consensus 182 ~~~~~~~~~~--~aDiVi~aT~s~~p~i~-~~l~-------~G~hV~~iGs~~p~~~E~~~~ 233 (325)
T PRK08618 182 VVNSADEAIE--EADIIVTVTNAKTPVFS-EKLK-------KGVHINAVGSFMPDMQELPSE 233 (325)
T ss_pred EeCCHHHHHh--cCCEEEEccCCCCcchH-HhcC-------CCcEEEecCCCCcccccCCHH
Confidence 3467889997 789998765432 2233 3332 22235455 332246788873
No 294
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=58.73 E-value=31 Score=36.76 Aligned_cols=37 Identities=30% Similarity=0.465 Sum_probs=24.3
Q ss_pred CCcEEEeccCCCCCCCHHHHHHcccCC-CCCCEEEecC-CCC
Q 040403 427 KPDVLLGLSAVGGLFSKEVLEAMRGST-STRPAIFAMS-NPT 466 (623)
Q Consensus 427 kptvLIG~S~~~g~Ft~evv~~M~a~~-~erPIIFaLS-NPt 466 (623)
+-|++||+|..|. |++++..++.+. ..-|+ ++++ ||.
T Consensus 127 ~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~~-IaIT~~~~ 165 (296)
T PRK12570 127 ADDVVVGIAASGR--TPYVIGALEYAKQIGATT-IALSCNPD 165 (296)
T ss_pred CCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeE-EEEECCCC
Confidence 5699999996554 688988884333 33344 5555 555
No 295
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=58.69 E-value=14 Score=40.27 Aligned_cols=37 Identities=19% Similarity=0.407 Sum_probs=28.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcc
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLI 387 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi 387 (623)
+||||+|+|.||+..|..|.+. |- .-+|.++|++..+
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~-----~~--------~~~Vtli~~~~~~ 37 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRL-----NK--------ELEITVYEKTDIV 37 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHH-----CC--------CCcEEEEECCCcc
Confidence 3899999999999999887653 41 1368899987543
No 296
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=58.62 E-value=12 Score=40.35 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=26.4
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcc
Q 040403 340 IVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLI 387 (623)
Q Consensus 340 iv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi 387 (623)
|+|+|||.||..+|..+.++ +. ..++.++|++--.
T Consensus 2 viIvGaGpAGlslA~~l~~~-----~~--------g~~Vllid~~~~~ 36 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADA-----RP--------GLSVLLIDPKPKP 36 (374)
T ss_pred EEEECCcHHHHHHHHHHHhc-----CC--------CCEEEEEcCCccc
Confidence 79999999999999988443 21 2578888886444
No 297
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=58.48 E-value=44 Score=34.66 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=19.0
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 040403 338 QKIVVAGAGSAGLGVLNAARK 358 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~ 358 (623)
.+|.|+|.|..|..+|..+..
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~ 23 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLK 23 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHH
Confidence 479999999999999999876
No 298
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=58.38 E-value=7.2 Score=44.53 Aligned_cols=46 Identities=28% Similarity=0.394 Sum_probs=34.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeE-----EEEccCCcccC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQF-----WVVDAKGLITE 389 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i-----~lvD~~GLi~~ 389 (623)
+||+|+|||-||++.|..|.++ |.+. +.=||+.++ -..|++|..++
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~-----g~~v-t~~ea~~~~GGk~~s~~~~dg~~~E 51 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADA-----GYDV-TLYEARDRLGGKVASWRDSDGNHVE 51 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhC-----CCce-EEEeccCccCceeeeeecCCCCeee
Confidence 5999999999999999999986 9865 345666542 22556666654
No 299
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=58.16 E-value=11 Score=35.61 Aligned_cols=36 Identities=22% Similarity=0.368 Sum_probs=28.3
Q ss_pred EEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCc
Q 040403 341 VVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGL 386 (623)
Q Consensus 341 v~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GL 386 (623)
+|+|+|.+|+.+++.|+... . ....-+|.++|.++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~-~---------~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA-D---------PKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc-C---------CCCCCEEEEEcCCCc
Confidence 48999999999999999863 1 223468999999755
No 300
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=58.09 E-value=41 Score=34.91 Aligned_cols=31 Identities=26% Similarity=0.257 Sum_probs=25.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
||.|+|.|..|.++|..+... |. +++++|++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~-----G~----------~V~~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA-----GY----------QLHVTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC-----CC----------eEEEEcCC
Confidence 588999999999999998864 73 47777764
No 301
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=58.04 E-value=7.5 Score=41.92 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=19.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 040403 338 QKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~ 359 (623)
.+|+|+|||-||+..|..|.+.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~ 22 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKK 22 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHh
Confidence 4799999999999999998875
No 302
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=57.81 E-value=14 Score=40.68 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=26.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.||||+|+|.||+..|+.|.+. +- .-+|.++|+.
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~-----~~--------~~~I~li~~~ 35 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRL-----DK--------ESDIIIFEKD 35 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhh-----CC--------CCCEEEEECC
Confidence 3899999999999999998652 21 1358888875
No 303
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=57.76 E-value=10 Score=40.12 Aligned_cols=36 Identities=14% Similarity=0.133 Sum_probs=26.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCc
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGL 386 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GL 386 (623)
+|||+|+|.||+-.|+.+... . .. ..+|.++|++.-
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~-----~-~~------~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMK-----P-LP------GVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCc-----C-CC------CCEEEEECCCCC
Confidence 599999999999888877542 1 11 257999997654
No 304
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=57.73 E-value=85 Score=34.06 Aligned_cols=90 Identities=16% Similarity=0.158 Sum_probs=61.4
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLW 414 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~ 414 (623)
+...++-|+|.|..|..||+.+... |+ +|...|++.. +...+.+ ..
T Consensus 144 l~gktvGIiG~GrIG~avA~r~~~F-----gm----------~v~y~~~~~~--------~~~~~~~-----------~~ 189 (324)
T COG1052 144 LRGKTLGIIGLGRIGQAVARRLKGF-----GM----------KVLYYDRSPN--------PEAEKEL-----------GA 189 (324)
T ss_pred CCCCEEEEECCCHHHHHHHHHHhcC-----CC----------EEEEECCCCC--------hHHHhhc-----------Cc
Confidence 8999999999999999999998843 75 4555666422 1111111 11
Q ss_pred CCCCHHHHHhhcCCcEEEeccC----CCCCCCHHHHHHcccCCCCCCEEEecCC
Q 040403 415 EGASLVEVVQQVKPDVLLGLSA----VGGLFSKEVLEAMRGSTSTRPAIFAMSN 464 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLIG~S~----~~g~Ft~evv~~M~a~~~erPIIFaLSN 464 (623)
...+|.|.++ +.|+|+-..- .-++|+++.++.| .+.-+|.=.|.
T Consensus 190 ~y~~l~ell~--~sDii~l~~Plt~~T~hLin~~~l~~m----k~ga~lVNtaR 237 (324)
T COG1052 190 RYVDLDELLA--ESDIISLHCPLTPETRHLINAEELAKM----KPGAILVNTAR 237 (324)
T ss_pred eeccHHHHHH--hCCEEEEeCCCChHHhhhcCHHHHHhC----CCCeEEEECCC
Confidence 2334999999 8999886431 2388999999999 55556654444
No 305
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=57.56 E-value=71 Score=35.12 Aligned_cols=81 Identities=21% Similarity=0.391 Sum_probs=49.3
Q ss_pred HHHHHHHhCCCCCCCCCceEEEeCcchHHHHH-HHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhH
Q 040403 321 LLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGV-LNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAK 399 (623)
Q Consensus 321 ll~A~r~~g~~~~~l~d~riv~~GAGsAg~GI-A~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~ 399 (623)
.++|+|..+.+ ..++|+|+|+| |+|. |=|+..+ . | .+++.+|+ ++.|+
T Consensus 155 ~y~alk~~~~~----pG~~V~I~G~G--GlGh~avQ~Aka---~-g----------a~Via~~~-----------~~~K~ 203 (339)
T COG1064 155 TYRALKKANVK----PGKWVAVVGAG--GLGHMAVQYAKA---M-G----------AEVIAITR-----------SEEKL 203 (339)
T ss_pred EeeehhhcCCC----CCCEEEEECCc--HHHHHHHHHHHH---c-C----------CeEEEEeC-----------ChHHH
Confidence 46889998877 58999999999 4443 3344443 2 5 35888887 46677
Q ss_pred HhHHHhh-h-hcccccCCCCCHHHHHhhcCCcEEEeccC
Q 040403 400 PFARKVN-E-ISRQGLWEGASLVEVVQQVKPDVLLGLSA 436 (623)
Q Consensus 400 ~fA~~~~-~-~~~~~~~~~~~L~e~V~~vkptvLIG~S~ 436 (623)
.+|+.-- + .-+| . ..+..+.++.. .|++|=+.+
T Consensus 204 e~a~~lGAd~~i~~--~-~~~~~~~~~~~-~d~ii~tv~ 238 (339)
T COG1064 204 ELAKKLGADHVINS--S-DSDALEAVKEI-ADAIIDTVG 238 (339)
T ss_pred HHHHHhCCcEEEEc--C-CchhhHHhHhh-CcEEEECCC
Confidence 8886421 1 0111 1 22344444432 888887665
No 306
>PLN02740 Alcohol dehydrogenase-like
Probab=57.43 E-value=38 Score=36.38 Aligned_cols=34 Identities=32% Similarity=0.482 Sum_probs=23.8
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEcc
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDA 383 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~ 383 (623)
.+++++|+|+|+.|...+.+... .|. ++++.+|+
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~-----~G~---------~~Vi~~~~ 231 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARA-----RGA---------SKIIGVDI 231 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-----CCC---------CcEEEEcC
Confidence 57899999998877665554443 273 46787776
No 307
>PRK13937 phosphoheptose isomerase; Provisional
Probab=57.33 E-value=43 Score=32.96 Aligned_cols=22 Identities=45% Similarity=0.650 Sum_probs=17.3
Q ss_pred CCcEEEeccCCCCCCCHHHHHHcc
Q 040403 427 KPDVLLGLSAVGGLFSKEVLEAMR 450 (623)
Q Consensus 427 kptvLIG~S~~~g~Ft~evv~~M~ 450 (623)
+-|++|++|..| -|+++++.++
T Consensus 106 ~~Dl~i~iS~sG--~t~~~~~~~~ 127 (188)
T PRK13937 106 PGDVLIGISTSG--NSPNVLAALE 127 (188)
T ss_pred CCCEEEEEeCCC--CcHHHHHHHH
Confidence 569999999644 4799998883
No 308
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=56.99 E-value=18 Score=38.74 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=27.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCc
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGL 386 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GL 386 (623)
.+|||+|+|.||+..|+.|... + . .-+|.++++..-
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~-----~------~--~~~Itvi~~~~~ 38 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQ-----D------A--HIPITLITADSG 38 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhh-----C------c--CCCEEEEeCCCC
Confidence 4899999999999999988552 3 1 246888887543
No 309
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=56.81 E-value=64 Score=31.70 Aligned_cols=157 Identities=16% Similarity=0.183 Sum_probs=92.3
Q ss_pred hcCCCcccccccChhhHHHHHhcCCCCCceEEEEecC--ceeeccCCCCCc--cccchhhhHHHHHHhcCCCCCCeeeEE
Q 040403 158 FRRPRGMYFSAEDRGEMKSMVYNWPAEQVDMIVVTDG--SRILGLGDLGVQ--GIGIAVGKLDLYVAAAGINPQRVLPIM 233 (623)
Q Consensus 158 ~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG--~rILGLGDlG~~--GmgI~iGKl~LY~a~gGI~P~~~lPI~ 233 (623)
-+++.|+-++..|.......++.+...+|.|+.+-.. ..-..+--.|.+ .+|-..|+..+-....+ ..|+
T Consensus 53 ~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~~~~~~~~~~~v~~d~~~~G~~~a~~l~~~~~~~------~~v~ 126 (257)
T PF13407_consen 53 SQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSDEAPDSPRAAYVGTDNYEAGKLAAEYLAEKLGAK------GKVL 126 (257)
T ss_dssp HTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESSTHHTTSTSSEEEEE-HHHHHHHHHHHHHHHHTTT------EEEE
T ss_pred HhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEeccccccccceeeeeccHHHHHHHHHHHHHHHhccC------ceEE
Confidence 4678999999999988888888887788888887554 111122223332 35555666666555544 4455
Q ss_pred eeccCCccccccCcCCCCcCCCCCCchhhhHhHHHHHHHHHHhCCce-eee---cccCCCchHHHHHHHHhccCCccccC
Q 040403 234 IDVGTTNEKLLKDPLYLGLQEHRLDGDEYVSVIDEFMEAIFTRWPNV-IVQ---FEDFQSKWAFKLLQRYRYKYRMFNDD 309 (623)
Q Consensus 234 LDvGTnN~~LL~DPlYlG~r~~Rv~g~~Y~~~vdefv~av~~~~P~~-lIq---fEDf~~~nAf~lL~ryr~~~~~FNDD 309 (623)
+=.|.- ......+..+-|.++++. +|++ .+. +.++....+.+..+++-...+ -|=
T Consensus 127 ~~~~~~------------------~~~~~~~r~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~--~~~ 185 (257)
T PF13407_consen 127 ILSGSP------------------GNPNTQERLEGFRDALKE-YPGVEIVDEYEYTDWDPEDARQAIENLLQANP--VDA 185 (257)
T ss_dssp EEESST------------------TSHHHHHHHHHHHHHHHH-CTTEEEEEEEEECTTSHHHHHHHHHHHHHHTT--EEE
T ss_pred eccCCC------------------CchHHHHHHHHHHHHHhh-cceeeeeeeeeccCCCHHHHHHHHHHhhhcCC--ceE
Confidence 444421 112223457788888888 8886 333 347888888876666654432 111
Q ss_pred cchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCc
Q 040403 310 VQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGA 345 (623)
Q Consensus 310 iQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GA 345 (623)
|=.+....+-|++.|++-.|+. .+..|+-+|.
T Consensus 186 i~~~~~~~~~g~~~al~~~g~~----~~~~v~g~d~ 217 (257)
T PF13407_consen 186 IIACNDGMALGAAQALQQAGRA----GKVIVVGFDG 217 (257)
T ss_dssp EEESSHHHHHHHHHHHHHTTCT----TTSEEEEEEC
T ss_pred EEeCCChHHHHHHHHHHHcCCc----ccceeecCCC
Confidence 1122223334777888888876 3444444443
No 310
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=56.41 E-value=71 Score=38.17 Aligned_cols=107 Identities=20% Similarity=0.105 Sum_probs=61.3
Q ss_pred HHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCC--------CCCCCHHHHhcccCCcEEEecCCCC
Q 040403 421 EVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTN--------NAECTPEEAFSIVGDNIIFASGSPF 492 (623)
Q Consensus 421 e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~--------~~E~tpeda~~wT~Grai~AtGsPF 492 (623)
++=+.++|+++|..+|. .++-.-+... ..+-+|=|.+=.-||.. ..+-|.++.+++.-- |+..-=.
T Consensus 413 ~l~~~~~~~~ilasNTS--sl~i~~la~~-~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~~---~~~~lgk 486 (715)
T PRK11730 413 EVEQKVREDTILASNTS--TISISLLAKA-LKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVA---YASKMGK 486 (715)
T ss_pred HHHhhCCCCcEEEEcCC--CCCHHHHHhh-cCCCccEEEEecCCcccccceEEeeCCCCCCHHHHHHHHH---HHHHhCC
Confidence 44456789999987653 3443334343 34556668888999963 233344444433210 1111123
Q ss_pred CccccCCCeeccCCCCccccchhHHHHHHHHcCCcccCHHHHHHHH
Q 040403 493 KDVDLGNGHIGHCNQGNNMYLFPGVGLGTLLSGSRIISDGMLQAAA 538 (623)
Q Consensus 493 ~pv~~~~G~~~~p~Q~NN~yiFPGiglG~~~~~a~~Itd~m~~aAA 538 (623)
.||.. .+.||-.=|-..+|-+--++.+...- .|.+.+-+|.
T Consensus 487 ~pv~v----~d~pGfv~nRi~~~~~~ea~~lv~~G-a~~e~ID~a~ 527 (715)
T PRK11730 487 TPIVV----NDCPGFFVNRVLFPYFAGFSQLLRDG-ADFRQIDKVM 527 (715)
T ss_pred ceEEe----cCcCchhHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH
Confidence 45555 36788888888888776655444433 5666666654
No 311
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=56.16 E-value=13 Score=40.54 Aligned_cols=21 Identities=24% Similarity=0.493 Sum_probs=18.5
Q ss_pred eEEEeCcchHHHHHHHHHHHH
Q 040403 339 KIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~ 359 (623)
+|+|+|||.||...|..+...
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~ 22 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASA 22 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhC
Confidence 799999999999999887764
No 312
>PLN02676 polyamine oxidase
Probab=56.13 E-value=18 Score=40.78 Aligned_cols=24 Identities=21% Similarity=0.595 Sum_probs=21.1
Q ss_pred CCceEEEeCcchHHHHHHHHHHHH
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~ 359 (623)
...+|+|+|||.+|+..|..|...
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~ 48 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEA 48 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHc
Confidence 466899999999999999998874
No 313
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=55.76 E-value=39 Score=35.03 Aligned_cols=31 Identities=26% Similarity=0.308 Sum_probs=24.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
||.|+|+|..|..+|..|... | -+++++|++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~-----g----------~~V~~~d~~ 32 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL-----G----------HTVYGVSRR 32 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC-----C----------CEEEEEECC
Confidence 799999999999999988764 6 247777764
No 314
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=55.42 E-value=71 Score=40.51 Aligned_cols=68 Identities=16% Similarity=0.308 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhc---
Q 040403 350 LGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQV--- 426 (623)
Q Consensus 350 ~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~v--- 426 (623)
+-|++.+++.+.++.|++. ++|+ +|. |+.+-+-. .+ .+..++. .-.++++.+
T Consensus 485 ~~i~~~~~~~~~~~~Gi~~-------edIi-~DP-~i~~v~~g-~~-e~n~~~~--------------~~le~i~~ik~~ 539 (1178)
T TIGR02082 485 IEICKRAYNILTEKVGFPP-------EDII-FDP-NILTIATG-IE-EHRRYAI--------------NFIEAIRWIKEE 539 (1178)
T ss_pred HHHHHHHHHHHHHHcCCCH-------HHEE-EeC-CccccccC-ch-HHHHHHH--------------HHHHHHHHHHHh
Confidence 3489999998876459986 6776 777 22221111 11 1112221 134555655
Q ss_pred --CCcEEEeccCCCCCCC
Q 040403 427 --KPDVLLGLSAVGGLFS 442 (623)
Q Consensus 427 --kptvLIG~S~~~g~Ft 442 (623)
+.-+++|+|...=.|.
T Consensus 540 ~pg~~~~~GlSN~SFglp 557 (1178)
T TIGR02082 540 LPDAKISGGVSNVSFSFR 557 (1178)
T ss_pred CCCCceEEEecccccCCC
Confidence 5679999998765563
No 315
>PRK07233 hypothetical protein; Provisional
Probab=55.33 E-value=13 Score=39.79 Aligned_cols=21 Identities=38% Similarity=0.540 Sum_probs=18.5
Q ss_pred eEEEeCcchHHHHHHHHHHHH
Q 040403 339 KIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~ 359 (623)
||+|+|||-||+..|..|.+.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~ 21 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR 21 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC
Confidence 689999999999999888764
No 316
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=55.28 E-value=33 Score=37.57 Aligned_cols=80 Identities=24% Similarity=0.292 Sum_probs=49.9
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLW 414 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~ 414 (623)
|++.+|.|+|-|+-|.++|+.+... |+ +++..|+.+ . ....|.. + .-
T Consensus 14 LkgKtVGIIG~GsIG~amA~nL~d~-----G~----------~ViV~~r~~---~--------s~~~A~~--~-----G~ 60 (335)
T PRK13403 14 LQGKTVAVIGYGSQGHAQAQNLRDS-----GV----------EVVVGVRPG---K--------SFEVAKA--D-----GF 60 (335)
T ss_pred hCcCEEEEEeEcHHHHHHHHHHHHC-----cC----------EEEEEECcc---h--------hhHHHHH--c-----CC
Confidence 8899999999999999999999875 86 355555431 0 0112211 1 11
Q ss_pred CCCCHHHHHhhcCCcEEEecc---CCCCCCCHHHHHHc
Q 040403 415 EGASLVEVVQQVKPDVLLGLS---AVGGLFSKEVLEAM 449 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLIG~S---~~~g~Ft~evv~~M 449 (623)
...++.|+++ +.|+++=+- .+.+++.++++..|
T Consensus 61 ~v~sl~Eaak--~ADVV~llLPd~~t~~V~~~eil~~M 96 (335)
T PRK13403 61 EVMSVSEAVR--TAQVVQMLLPDEQQAHVYKAEVEENL 96 (335)
T ss_pred EECCHHHHHh--cCCEEEEeCCChHHHHHHHHHHHhcC
Confidence 2247999999 788887332 12344444555555
No 317
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=55.25 E-value=62 Score=34.52 Aligned_cols=87 Identities=25% Similarity=0.300 Sum_probs=44.1
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWE 415 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~ 415 (623)
.+++|+|.|+|+.|...+.+... .|. ++++.+|+ ++.+..+|+.- .....-...
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~-----~G~---------~~Vi~~~~-----------~~~r~~~a~~~-Ga~~~i~~~ 244 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVA-----AGA---------SQVVAVDL-----------NEDKLALAREL-GATATVNAG 244 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-----cCC---------CcEEEEcC-----------CHHHHHHHHHc-CCceEeCCC
Confidence 57899999998766544333332 374 45777765 34455566421 000000011
Q ss_pred CCCHHHHHhhc---CCcEEEeccCCCCCCCHHHHHHc
Q 040403 416 GASLVEVVQQV---KPDVLLGLSAVGGLFSKEVLEAM 449 (623)
Q Consensus 416 ~~~L~e~V~~v---kptvLIG~S~~~g~Ft~evv~~M 449 (623)
..++.+.++.. +.|++|=+++.+..+ ++.++.+
T Consensus 245 ~~~~~~~i~~~~~~g~d~vid~~G~~~~~-~~~~~~l 280 (371)
T cd08281 245 DPNAVEQVRELTGGGVDYAFEMAGSVPAL-ETAYEIT 280 (371)
T ss_pred chhHHHHHHHHhCCCCCEEEECCCChHHH-HHHHHHH
Confidence 12344444432 468888877543222 3344444
No 318
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=54.98 E-value=10 Score=33.76 Aligned_cols=36 Identities=17% Similarity=0.363 Sum_probs=26.8
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 334 DFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 334 ~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+|++.++||+|+|..|.-=+++|+++ | .++.++...
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~-----g----------A~v~vis~~ 39 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEA-----G----------AKVTVISPE 39 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCC-----T----------BEEEEEESS
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhC-----C----------CEEEEECCc
Confidence 48899999999999998887777763 5 467777775
No 319
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=54.90 E-value=16 Score=40.88 Aligned_cols=34 Identities=26% Similarity=0.498 Sum_probs=27.8
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.+.+|+|+|+|.||+..|..+... | .++.++|+.
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~-----G----------~~V~vie~~ 175 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARA-----G----------HKVTVFERA 175 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-----C----------CcEEEEecC
Confidence 568999999999999998887653 6 358888875
No 320
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=54.77 E-value=14 Score=39.65 Aligned_cols=21 Identities=19% Similarity=0.441 Sum_probs=18.2
Q ss_pred eEEEeCcchHHHHHHHHHHHH
Q 040403 339 KIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~ 359 (623)
.|+|+|||.||...|..|...
T Consensus 2 DVvIVGaGpAG~~aA~~La~~ 22 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARA 22 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhC
Confidence 589999999999999887763
No 321
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=54.65 E-value=15 Score=39.65 Aligned_cols=83 Identities=24% Similarity=0.319 Sum_probs=47.9
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHH-hh-h--hcccccCC
Q 040403 340 IVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARK-VN-E--ISRQGLWE 415 (623)
Q Consensus 340 iv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~-~~-~--~~~~~~~~ 415 (623)
|+|+|+|..|-.+++.|.+. +- ..++.+.|++ .+..+.++.. .. . +.......
T Consensus 1 IlvlG~G~vG~~~~~~L~~~-----~~--------~~~v~va~r~----------~~~~~~~~~~~~~~~~~~~~~d~~~ 57 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR-----GP--------FEEVTVADRN----------PEKAERLAEKLLGDRVEAVQVDVND 57 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT-----TC--------E-EEEEEESS----------HHHHHHHHT--TTTTEEEEE--TTT
T ss_pred CEEEcCcHHHHHHHHHHhcC-----CC--------CCcEEEEECC----------HHHHHHHHhhccccceeEEEEecCC
Confidence 79999999999999888763 21 1278999985 1111222211 00 0 00000122
Q ss_pred CCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHc
Q 040403 416 GASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAM 449 (623)
Q Consensus 416 ~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M 449 (623)
..+|.+.++ +.|++|-+++.. +...++++-
T Consensus 58 ~~~l~~~~~--~~dvVin~~gp~--~~~~v~~~~ 87 (386)
T PF03435_consen 58 PESLAELLR--GCDVVINCAGPF--FGEPVARAC 87 (386)
T ss_dssp HHHHHHHHT--TSSEEEE-SSGG--GHHHHHHHH
T ss_pred HHHHHHHHh--cCCEEEECCccc--hhHHHHHHH
Confidence 334888998 779999988644 788888875
No 322
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=54.50 E-value=16 Score=42.66 Aligned_cols=34 Identities=26% Similarity=0.495 Sum_probs=28.0
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.+.+|+|+|+|.||+..|..|... |. ++.++|+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~-----G~----------~V~V~E~~ 359 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARN-----GV----------AVTVYDRH 359 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-----CC----------eEEEEecC
Confidence 578999999999999999888763 73 47778764
No 323
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=54.44 E-value=59 Score=29.47 Aligned_cols=62 Identities=15% Similarity=0.156 Sum_probs=36.4
Q ss_pred CCcEEEeccCCCCCCCHHHHHHcc-cCCCCCCEEEecCCCCCCCCCCHHHHhcccCCcEEEecC-CCCCcccc
Q 040403 427 KPDVLLGLSAVGGLFSKEVLEAMR-GSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASG-SPFKDVDL 497 (623)
Q Consensus 427 kptvLIG~S~~~g~Ft~evv~~M~-a~~~erPIIFaLSNPt~~~E~tpeda~~wT~Grai~AtG-sPF~pv~~ 497 (623)
+-|++|++|..| =|+++++.++ ++...-|+|.==+||.+ . .-+.+|--..+.+| +++.+|.+
T Consensus 47 ~~dl~I~iS~SG--~t~~~~~~~~~a~~~g~~vi~iT~~~~s--~-----la~~ad~~l~~~~~~~~~~~~~~ 110 (120)
T cd05710 47 EKSVVILASHSG--NTKETVAAAKFAKEKGATVIGLTDDEDS--P-----LAKLADYVIVYGFEIDAVEEKYL 110 (120)
T ss_pred CCcEEEEEeCCC--CChHHHHHHHHHHHcCCeEEEEECCCCC--c-----HHHhCCEEEEccCCcCccchHHH
Confidence 568999999544 3699999884 33344465554444442 1 12244444556677 66666654
No 324
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=54.19 E-value=19 Score=29.80 Aligned_cols=30 Identities=27% Similarity=0.367 Sum_probs=23.2
Q ss_pred EeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCc
Q 040403 342 VAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGL 386 (623)
Q Consensus 342 ~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GL 386 (623)
|+|||.+|+..|-.|.+. | .+|.+++++--
T Consensus 1 IiGaG~sGl~aA~~L~~~-----g----------~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-----G----------YRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-----T----------SEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHC-----C----------CcEEEEecCcc
Confidence 789999999999888763 5 47888888643
No 325
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=53.69 E-value=19 Score=39.96 Aligned_cols=35 Identities=34% Similarity=0.471 Sum_probs=28.5
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
....+|+|+|+|.||+..|..+... | .++.++|+.
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~-----G----------~~V~vie~~ 165 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKA-----G----------HSVTVFEAL 165 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHC-----C----------CcEEEEecC
Confidence 4678999999999999999888663 6 357788864
No 326
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=53.63 E-value=21 Score=39.77 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=21.5
Q ss_pred CCCceEEEeCcchHHHHHHHHHHH
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARK 358 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~ 358 (623)
++.++++|+|+|.+|+.+|+.|.+
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~ 37 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLE 37 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHH
Confidence 778899999999999999888765
No 327
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=53.47 E-value=13 Score=42.54 Aligned_cols=75 Identities=25% Similarity=0.393 Sum_probs=47.5
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLW 414 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~ 414 (623)
+++-||+++|||..|+-.-+.|+.. |+ +.|.++|.+ |-+-.+|+. |--|-|+ |- . .+
T Consensus 10 i~~~riLvVGaGGIGCELLKnLal~-----gf---------~~IhiIDlD---TIDlSNLNR-QFLFrkk-hV-g---qs 66 (603)
T KOG2013|consen 10 IKSGRILVVGAGGIGCELLKNLALT-----GF---------EEIHIIDLD---TIDLSNLNR-QFLFRKK-HV-G---QS 66 (603)
T ss_pred hccCeEEEEecCcccHHHHHHHHHh-----cC---------CeeEEEecc---ceeccchhh-hheeehh-hc-C---ch
Confidence 6788999999998887776666653 86 559999987 323333432 2233222 11 1 12
Q ss_pred CCCCHHHHHhhcCCcEEE
Q 040403 415 EGASLVEVVQQVKPDVLL 432 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLI 432 (623)
....-.++|++..|.+=|
T Consensus 67 KA~vA~~~v~~Fnpn~~l 84 (603)
T KOG2013|consen 67 KATVAAKAVKQFNPNIKL 84 (603)
T ss_pred HHHHHHHHHHHhCCCCce
Confidence 234466888888888766
No 328
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=53.20 E-value=61 Score=34.30 Aligned_cols=34 Identities=26% Similarity=0.396 Sum_probs=23.0
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEcc
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDA 383 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~ 383 (623)
.+++|+|.|+|+.|...+.+... .|. ++++.+|+
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~-----~G~---------~~Vi~~~~ 209 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAAL-----AGA---------SKIIAVDI 209 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-----cCC---------CeEEEEcC
Confidence 57899999998777655444333 273 45777776
No 329
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=52.50 E-value=32 Score=30.72 Aligned_cols=80 Identities=20% Similarity=0.221 Sum_probs=46.4
Q ss_pred CcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHH
Q 040403 344 GAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVV 423 (623)
Q Consensus 344 GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V 423 (623)
|.|..|.+++++|...-.. .+ .+=..++|+++++... ..... .. .....++.+.+
T Consensus 1 G~G~VG~~l~~~l~~~~~~-~~---------~~v~~v~~~~~~~~~~-------~~~~~---~~-----~~~~~~~~~~~ 55 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQER-ID---------LEVVGVADRSMLISKD-------WAASF---PD-----EAFTTDLEELI 55 (117)
T ss_dssp --SHHHHHHHHHHHHTHHH-CE---------EEEEEEEESSEEEETT-------HHHHH---TH-----SCEESSHHHHH
T ss_pred CCCHHHHHHHHHHHhCccc-CC---------EEEEEEEECCchhhhh-------hhhhc---cc-----ccccCCHHHHh
Confidence 7899999999999874111 01 2346778887444432 11111 11 23457799999
Q ss_pred hhcCCcEEEeccCCCCCCCHHHHHHc
Q 040403 424 QQVKPDVLLGLSAVGGLFSKEVLEAM 449 (623)
Q Consensus 424 ~~vkptvLIG~S~~~g~Ft~evv~~M 449 (623)
+..++|++|=++ .....++-+.+.+
T Consensus 56 ~~~~~dvvVE~t-~~~~~~~~~~~~L 80 (117)
T PF03447_consen 56 DDPDIDVVVECT-SSEAVAEYYEKAL 80 (117)
T ss_dssp THTT-SEEEE-S-SCHHHHHHHHHHH
T ss_pred cCcCCCEEEECC-CchHHHHHHHHHH
Confidence 989999999994 4444444444444
No 330
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=52.29 E-value=79 Score=31.42 Aligned_cols=25 Identities=12% Similarity=0.153 Sum_probs=19.7
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHH
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMA 361 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~ 361 (623)
++.||.|+|.|..+ -+|..+...|.
T Consensus 43 ~~~rI~i~G~G~S~-~~A~~~a~~l~ 67 (192)
T PRK00414 43 AGGKVLSCGNGGSH-CDAMHFAEELT 67 (192)
T ss_pred CCCEEEEEeCcHHH-HHHHHHHHHhc
Confidence 56899999999987 67777776554
No 331
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=52.28 E-value=2.5e+02 Score=29.37 Aligned_cols=18 Identities=39% Similarity=0.647 Sum_probs=12.9
Q ss_pred CCceEEEeCcchHHHHHH
Q 040403 336 PKQKIVVAGAGSAGLGVL 353 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA 353 (623)
.+++++|.|+|+.|...+
T Consensus 172 ~g~~vlI~g~g~vG~~a~ 189 (351)
T cd08233 172 PGDTALVLGAGPIGLLTI 189 (351)
T ss_pred CCCEEEEECCCHHHHHHH
Confidence 578999999876554443
No 332
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=52.23 E-value=19 Score=40.37 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=22.1
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHH
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~ 359 (623)
+...||+|+|+|-+|.++|+.|...
T Consensus 13 ~~~~~v~v~G~G~sG~a~a~~L~~~ 37 (473)
T PRK00141 13 ELSGRVLVAGAGVSGRGIAAMLSEL 37 (473)
T ss_pred ccCCeEEEEccCHHHHHHHHHHHHC
Confidence 6678999999999999999998763
No 333
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=52.17 E-value=17 Score=34.71 Aligned_cols=24 Identities=29% Similarity=0.583 Sum_probs=19.2
Q ss_pred CCCceEEEeCcchHHHHHHHHHHH
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARK 358 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~ 358 (623)
+++++|+|+|+|..|+-+|..|..
T Consensus 165 ~~~k~V~VVG~G~SA~d~a~~l~~ 188 (203)
T PF13738_consen 165 FKGKRVVVVGGGNSAVDIAYALAK 188 (203)
T ss_dssp CTTSEEEEE--SHHHHHHHHHHTT
T ss_pred cCCCcEEEEcChHHHHHHHHHHHh
Confidence 788999999999999988877765
No 334
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=52.11 E-value=17 Score=38.75 Aligned_cols=31 Identities=23% Similarity=0.457 Sum_probs=23.9
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 340 IVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 340 iv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
|+|+|||.||+..|..+... |+ ++.++|++.
T Consensus 2 viIiGaG~AGl~~A~~la~~-----g~----------~v~liE~~~ 32 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELARP-----GL----------RVQLIEPHP 32 (388)
T ss_pred EEEECCCHHHHHHHHHHHhC-----CC----------eEEEEccCC
Confidence 89999999999999776542 74 567777653
No 335
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=51.91 E-value=54 Score=38.69 Aligned_cols=34 Identities=29% Similarity=0.410 Sum_probs=27.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.||.|+|+|..|..+|..+... |.. .+++.+|++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~-----G~~--------~~V~~~d~~ 37 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER-----GLA--------REVVAVDRR 37 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CCC--------CEEEEEECC
Confidence 6899999999999999988764 641 358888874
No 336
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=51.88 E-value=18 Score=39.81 Aligned_cols=31 Identities=23% Similarity=0.453 Sum_probs=25.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.++|+|||.||+.+|..|... | .++.++|+.
T Consensus 3 DvvIIGaG~aGlsaA~~La~~-----G----------~~V~viEk~ 33 (377)
T TIGR00031 3 DYIIVGAGLSGIVLANILAQL-----N----------KRVLVVEKR 33 (377)
T ss_pred cEEEECCCHHHHHHHHHHHhC-----C----------CeEEEEecC
Confidence 589999999999999888753 6 457788874
No 337
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=51.87 E-value=19 Score=40.22 Aligned_cols=36 Identities=22% Similarity=0.513 Sum_probs=28.9
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
..-+++|+|||.+|+++|.-|.++ |.+ ++.++|+..
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~-----g~~---------~~~i~Ek~~ 42 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQA-----GVP---------DFVIFEKRD 42 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHc-----CCC---------cEEEEEccC
Confidence 456899999999999999988886 864 267777764
No 338
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=51.84 E-value=61 Score=36.88 Aligned_cols=35 Identities=31% Similarity=0.503 Sum_probs=29.3
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+..+||+|+|-|-.|+++|+.|.+. | -+++++|.+
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~-----G----------~~v~v~D~~ 39 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKL-----G----------AEVTVSDDR 39 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHC-----C----------CeEEEEcCC
Confidence 5689999999999999999999874 7 357777764
No 339
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=51.72 E-value=19 Score=39.48 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=27.9
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
+-.|||+|||+||+..|..+.+. | .++.++|++.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~-----g----------~~V~liE~~~ 36 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASA-----G----------KKVALVEESK 36 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC-----C----------CEEEEEecCC
Confidence 34799999999999999888763 7 4689999864
No 340
>PRK06847 hypothetical protein; Provisional
Probab=51.50 E-value=19 Score=37.91 Aligned_cols=27 Identities=30% Similarity=0.512 Sum_probs=22.3
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCc
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNE 368 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~ 368 (623)
..+|+|+|||.||+..|..|... |++.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~-----g~~v 30 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRA-----GIAV 30 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhC-----CCCE
Confidence 46899999999999999988763 8653
No 341
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=51.36 E-value=45 Score=37.85 Aligned_cols=136 Identities=17% Similarity=0.178 Sum_probs=76.8
Q ss_pred CceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCC-CCCChhhHHhHHHhhhhcccccC
Q 040403 337 KQKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDR-ENIDPDAKPFARKVNEISRQGLW 414 (623)
Q Consensus 337 d~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r-~~l~~~~~~fA~~~~~~~~~~~~ 414 (623)
=.||.|+|| |..|..+|-.|+.. .-.|.. +.-..+++++|.+-=...+- -||.+..-++-+ + ..
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~--~v~g~~----~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~---~-----v~ 165 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASG--EVFGPD----QPIALKLLGSERSKQALEGVAMELEDSLYPLLR---E-----VS 165 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc--ccccCC----CCcccEEEEEcCCcchhHHHHHHHHHhhhhhcC---c-----eE
Confidence 379999999 99999999988762 000111 11124788898741111110 112222112210 1 01
Q ss_pred CCCCHHHHHhhcCCcEEEeccCCC---CC-----------CCHHHHHHcccC-CCCCCEEEecCCCCCCCCCCHHHHhcc
Q 040403 415 EGASLVEVVQQVKPDVLLGLSAVG---GL-----------FSKEVLEAMRGS-TSTRPAIFAMSNPTNNAECTPEEAFSI 479 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLIG~S~~~---g~-----------Ft~evv~~M~a~-~~erPIIFaLSNPt~~~E~tpeda~~w 479 (623)
-..+-.+..+ ..|++|=+.|.+ |- .=+++.+.+ .+ .+..-||+-.|||- ....--++++
T Consensus 166 i~~~~ye~~k--daDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I-~~~a~p~~ivIVVsNPv---Dv~t~v~~k~ 239 (444)
T PLN00112 166 IGIDPYEVFQ--DAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKAL-NEVASRNVKVIVVGNPC---NTNALICLKN 239 (444)
T ss_pred EecCCHHHhC--cCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHhcCCCeEEEEcCCcH---HHHHHHHHHH
Confidence 0123356666 789888665553 31 125677777 67 68999999999997 5566666666
Q ss_pred cC--CcEEEecCCCC
Q 040403 480 VG--DNIIFASGSPF 492 (623)
Q Consensus 480 T~--Grai~AtGsPF 492 (623)
+. -+-+|.||.-.
T Consensus 240 sg~~~~rViGtgT~L 254 (444)
T PLN00112 240 APNIPAKNFHALTRL 254 (444)
T ss_pred cCCCCcceEEeeccH
Confidence 52 13455555433
No 342
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=51.34 E-value=18 Score=37.49 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=27.4
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
..+..|+|+|||.||+..|-.+... |+ ++.++|++-
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~~-----G~----------~V~liEk~~ 58 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAKA-----GL----------KVAVFERKL 58 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHhC-----CC----------eEEEEecCC
Confidence 3467899999999999998877553 74 467777653
No 343
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=51.32 E-value=59 Score=35.04 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=22.4
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHH
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~ 359 (623)
|++.+|.|+|+|.-|-++|..|.+.
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~s 25 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDS 25 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHC
Confidence 5688999999999999999998874
No 344
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=51.30 E-value=19 Score=41.17 Aligned_cols=35 Identities=26% Similarity=0.436 Sum_probs=27.5
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
-.+.+|+|+|||.||+..|..+... |. +++++|+.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~-----G~----------~V~v~e~~ 169 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRM-----GH----------AVTIFEAG 169 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-----CC----------eEEEEecC
Confidence 3578999999999999998877653 73 47778854
No 345
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=51.14 E-value=21 Score=40.21 Aligned_cols=43 Identities=30% Similarity=0.594 Sum_probs=31.0
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhcc--CeEEEEc
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSAR--SQFWVVD 382 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~--~~i~lvD 382 (623)
....+|+|+|||.||+..|..+.+. |+...-||... .-.|..+
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~-----G~~v~vfE~~~~vGG~W~~~ 52 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRRE-----GHTVVVFEREKQVGGLWVYT 52 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhc-----CCeEEEEecCCCCcceeecC
Confidence 4568999999999999999888764 87654445422 2357664
No 346
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=50.79 E-value=20 Score=37.84 Aligned_cols=35 Identities=20% Similarity=0.197 Sum_probs=27.8
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCc
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGL 386 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GL 386 (623)
...|+|+|||-+|+.+|-.|.+. | .++.++|+...
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~-----g----------~~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARR-----G----------LRVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-----C----------CeEEEEecccC
Confidence 35699999999999999887764 6 46888887643
No 347
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=50.62 E-value=64 Score=35.45 Aligned_cols=114 Identities=18% Similarity=0.186 Sum_probs=62.1
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEG 416 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~ 416 (623)
.++|+|+|.|-.|..+|+.+.+. |. +++.+|.+- ..+. +..+... .+ .
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~-----G~----------~V~g~D~~~------~~~~--~~~~~~~--~~-------~ 50 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQK-----GV----------YVIGVDKSL------EALQ--SCPYIHE--RY-------L 50 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHC-----CC----------EEEEEeCCc------cccc--hhHHHhh--hh-------c
Confidence 46899999999998887776653 72 478888641 1111 1111110 00 0
Q ss_pred CCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCccc
Q 040403 417 ASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGSPFKDVD 496 (623)
Q Consensus 417 ~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~Grai~AtGsPF~pv~ 496 (623)
.+..+..+ +++++|=..+.+ .-.+.+.++. .+. -||| |++. . +-.+..+.+.+.|-.|||
T Consensus 51 ~~~~~~~~--~~dlvV~s~gi~-~~~~~l~~A~-~~g--~~vv---~~~~----~-~~~~~~~~~~~~I~ITGT------ 110 (418)
T PRK00683 51 ENAEEFPE--QVDLVVRSPGIK-KEHPWVQAAI-ASH--IPVV---TDIQ----L-AFQTPEFTRYPSLGITGS------ 110 (418)
T ss_pred CCcHHHhc--CCCEEEECCCCC-CCcHHHHHHH-HCC--CcEE---EHHH----H-HHhhhhcCCCCEEEEECC------
Confidence 11222234 578888777665 3456666655 333 3432 3321 1 112222324578888998
Q ss_pred cCCCeecc
Q 040403 497 LGNGHIGH 504 (623)
Q Consensus 497 ~~~G~~~~ 504 (623)
+|||-.
T Consensus 111 --~GKTTT 116 (418)
T PRK00683 111 --TGKTTT 116 (418)
T ss_pred --CChHHH
Confidence 898753
No 348
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=50.52 E-value=21 Score=40.24 Aligned_cols=36 Identities=17% Similarity=0.303 Sum_probs=29.5
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
+++++|||+|+|..|+-||..|... + ++++++-+.+
T Consensus 202 ~~gk~VvVVG~G~Sg~diA~~L~~~-----a----------~~V~l~~r~~ 237 (461)
T PLN02172 202 FKNEVVVVIGNFASGADISRDIAKV-----A----------KEVHIASRAS 237 (461)
T ss_pred cCCCEEEEECCCcCHHHHHHHHHHh-----C----------CeEEEEEeec
Confidence 6789999999999999999888763 3 5788777654
No 349
>PRK06392 homoserine dehydrogenase; Provisional
Probab=50.40 E-value=67 Score=34.85 Aligned_cols=86 Identities=26% Similarity=0.390 Sum_probs=50.4
Q ss_pred eEEEeCcchHHHHHHHHHHHH--HHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhh-HHhHHHhhhhcccccCC
Q 040403 339 KIVVAGAGSAGLGVLNAARKT--MARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDA-KPFARKVNEISRQGLWE 415 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~--m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~-~~fA~~~~~~~~~~~~~ 415 (623)
||.++|.|..|-+++++|.+. . ++.|+.. +=+.+.|++|.+.+... ++..+ ..+.+. ..+..+ ...
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~-~~~g~~l-------~VVaVsds~g~l~~~~G-ldl~~l~~~~~~-g~l~~~-~~~ 70 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDD-RRNNNGI-------SVVSVSDSKLSYYNERG-LDIGKIISYKEK-GRLEEI-DYE 70 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHh-HhcCCCe-------EEEEEEECCCcccCCcC-CChHHHHHHHhc-CccccC-CCC
Confidence 799999999999999998762 2 2224332 33556799998877542 33211 111110 011111 001
Q ss_pred CCCHHHHHhhcCCcEEEeccC
Q 040403 416 GASLVEVVQQVKPDVLLGLSA 436 (623)
Q Consensus 416 ~~~L~e~V~~vkptvLIG~S~ 436 (623)
..++.+.++ .+|||+|=+++
T Consensus 71 ~~~~~~ll~-~~~DVvVE~t~ 90 (326)
T PRK06392 71 KIKFDEIFE-IKPDVIVDVTP 90 (326)
T ss_pred cCCHHHHhc-CCCCEEEECCC
Confidence 125777665 58999998874
No 350
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=50.39 E-value=64 Score=29.59 Aligned_cols=66 Identities=17% Similarity=0.193 Sum_probs=42.7
Q ss_pred CCCccccchhhhHHHHHHhcCCCCCCeeeEEeeccCCccccccCcCCCCcCCCCCCchhhhHhHHHHHHHHHHhCCceee
Q 040403 203 LGVQGIGIAVGKLDLYVAAAGINPQRVLPIMIDVGTTNEKLLKDPLYLGLQEHRLDGDEYVSVIDEFMEAIFTRWPNVIV 282 (623)
Q Consensus 203 lG~~GmgI~iGKl~LY~a~gGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~Rv~g~~Y~~~vdefv~av~~~~P~~lI 282 (623)
.|..|-...--+..+-......+|+. |.|-+||| |.++ +.+-++|.+-+++|++.+++.+|++.|
T Consensus 18 ~g~~G~~~~~~~~~~~~~~~~~~pd~---vvi~~G~N------D~~~------~~~~~~~~~~~~~~i~~i~~~~p~~~i 82 (157)
T cd01833 18 EGHSGYLIDQIAAAAADWVLAAKPDV---VLLHLGTN------DLVL------NRDPDTAPDRLRALIDQMRAANPDVKI 82 (157)
T ss_pred CCCCCccHHHHHHHhhhccccCCCCE---EEEeccCc------cccc------CCCHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 44444344433444434445566643 46788997 5433 146789999999999999999998644
Q ss_pred e
Q 040403 283 Q 283 (623)
Q Consensus 283 q 283 (623)
-
T Consensus 83 i 83 (157)
T cd01833 83 I 83 (157)
T ss_pred E
Confidence 3
No 351
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=50.26 E-value=20 Score=37.80 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=26.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcc
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLI 387 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi 387 (623)
.|+|+|||.+|+.+|-.|.+. | .++.++|+....
T Consensus 2 dvvIIGaGi~G~s~A~~La~~-----g----------~~V~l~e~~~~~ 35 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKH-----G----------KKTLLLEQFDLP 35 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHC-----C----------CeEEEEeccCCC
Confidence 589999999999999887753 6 357788886543
No 352
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=49.87 E-value=18 Score=38.78 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=22.7
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCc
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNE 368 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~ 368 (623)
+.+|+|+|||.||+..|-.|... |.+.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~-----G~~v 44 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDS-----GLRI 44 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcC-----CCEE
Confidence 56899999999999999988764 8654
No 353
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=49.79 E-value=21 Score=39.58 Aligned_cols=35 Identities=29% Similarity=0.456 Sum_probs=27.5
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
-...+|+|+|+|.||+..|..+... | .++.++|+.
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~-----g----------~~V~lie~~ 172 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARK-----G----------YDVTIFEAR 172 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhC-----C----------CeEEEEccC
Confidence 3568999999999999988877552 6 357788875
No 354
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=49.70 E-value=74 Score=33.59 Aligned_cols=115 Identities=19% Similarity=0.252 Sum_probs=60.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcC-CCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLG-NNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGA 417 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~G-ls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~ 417 (623)
+|.++|.|..|-+|.+++.+ | ++. +-++++|++ .+.-+..++.. ......
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~------~~~~~-------e~v~v~D~~----------~ek~~~~~~~~------~~~~~s 52 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRD------GRVDF-------ELVAVYDRD----------EEKAKELEASV------GRRCVS 52 (255)
T ss_pred eEEEEeccHHHHHHHHHHhc------CCcce-------eEEEEecCC----------HHHHHHHHhhc------CCCccc
Confidence 68999999999999888876 4 332 557777874 11112222110 122346
Q ss_pred CHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEE---ecCCCCCCCCCCHHHHhcccCCcEEEecC
Q 040403 418 SLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIF---AMSNPTNNAECTPEEAFSIVGDNIIFASG 489 (623)
Q Consensus 418 ~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIF---aLSNPt~~~E~tpeda~~wT~Grai~AtG 489 (623)
+|.|.+. .+|+++=+.++ .+.-+-+.+.+| ..-.=||+ |||-|.- -|- -+++-+-+++|.-|.||
T Consensus 53 ~ide~~~--~~DlvVEaAS~-~Av~e~~~~~L~--~g~d~iV~SVGALad~~l-~er-l~~lak~~~~rv~~pSG 120 (255)
T COG1712 53 DIDELIA--EVDLVVEAASP-EAVREYVPKILK--AGIDVIVMSVGALADEGL-RER-LRELAKCGGARVYLPSG 120 (255)
T ss_pred cHHHHhh--ccceeeeeCCH-HHHHHHhHHHHh--cCCCEEEEechhccChHH-HHH-HHHHHhcCCcEEEecCc
Confidence 6888775 78888876643 333333333331 11222333 3443331 111 23344455556666666
No 355
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=49.46 E-value=53 Score=35.84 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=22.7
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHH
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~ 359 (623)
|++.+|.|+|.|+.|.++|..|.+.
T Consensus 15 L~gktIgIIG~GsmG~AlA~~L~~s 39 (330)
T PRK05479 15 IKGKKVAIIGYGSQGHAHALNLRDS 39 (330)
T ss_pred hCCCEEEEEeeHHHHHHHHHHHHHC
Confidence 7889999999999999999998764
No 356
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=49.43 E-value=14 Score=40.00 Aligned_cols=20 Identities=20% Similarity=0.316 Sum_probs=17.4
Q ss_pred EEEeCcchHHHHHHHHHHHH
Q 040403 340 IVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 340 iv~~GAGsAg~GIA~ll~~~ 359 (623)
|+|+|||.||+.+|..|...
T Consensus 2 viIvGaG~AGl~lA~~L~~~ 21 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRA 21 (370)
T ss_pred EEEECccHHHHHHHHHHHhc
Confidence 79999999999999877753
No 357
>PRK12829 short chain dehydrogenase; Provisional
Probab=49.40 E-value=42 Score=33.18 Aligned_cols=36 Identities=25% Similarity=0.454 Sum_probs=23.3
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+++.+++|.||.. ||...++..+.++ | -++++++++
T Consensus 9 ~~~~~vlItGa~g---~iG~~~a~~L~~~-g----------~~V~~~~r~ 44 (264)
T PRK12829 9 LDGLRVLVTGGAS---GIGRAIAEAFAEA-G----------ARVHVCDVS 44 (264)
T ss_pred cCCCEEEEeCCCC---cHHHHHHHHHHHC-C----------CEEEEEeCC
Confidence 6889999999841 4444555554444 6 357877763
No 358
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=49.19 E-value=44 Score=35.76 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=19.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 040403 338 QKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~ 359 (623)
.||.|+|||+-|.-.|-.|..+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~ 22 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA 22 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC
Confidence 4899999999998888887775
No 359
>PRK08163 salicylate hydroxylase; Provisional
Probab=48.81 E-value=22 Score=37.91 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=19.8
Q ss_pred CceEEEeCcchHHHHHHHHHHHH
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~ 359 (623)
..+|+|+|||.||+..|-.|...
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~ 26 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQ 26 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhC
Confidence 46899999999999999887663
No 360
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=48.73 E-value=24 Score=37.63 Aligned_cols=34 Identities=29% Similarity=0.394 Sum_probs=27.5
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
..++|+|+|+|.||+..|..+.+. | .++.++|+.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~-----g----------~~v~lie~~ 50 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACL-----G----------YEVHVYDKL 50 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-----C----------CcEEEEeCC
Confidence 467999999999999998887653 6 357788875
No 361
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=48.59 E-value=22 Score=39.29 Aligned_cols=34 Identities=24% Similarity=0.369 Sum_probs=27.6
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
+-.++|+|||+||+..|..+... | .++.++|++.
T Consensus 4 ~yDvvVIGaGpaG~~aA~~aa~~-----G----------~~V~liE~~~ 37 (462)
T PRK06416 4 EYDVIVIGAGPGGYVAAIRAAQL-----G----------LKVAIVEKEK 37 (462)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-----C----------CcEEEEeccc
Confidence 35699999999999998887764 7 4688898764
No 362
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=48.52 E-value=21 Score=37.01 Aligned_cols=38 Identities=21% Similarity=0.418 Sum_probs=28.5
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcc
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLI 387 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi 387 (623)
..+-.|+|+|||.||+..|..+... |+ ++.+++++.-+
T Consensus 19 ~~~~DVvIVGgGpAGL~aA~~la~~-----G~----------~V~vlEk~~~~ 56 (254)
T TIGR00292 19 YAESDVIIVGAGPSGLTAAYYLAKN-----GL----------KVCVLERSLAF 56 (254)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHC-----CC----------cEEEEecCCCC
Confidence 3467899999999999998877653 63 57777776443
No 363
>PRK10262 thioredoxin reductase; Provisional
Probab=48.42 E-value=23 Score=36.96 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.0
Q ss_pred CCceEEEeCcchHHHHHHHHHHHH
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~ 359 (623)
+..+|||+|||.||+..|..+...
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~ 28 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARA 28 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHC
Confidence 678899999999999998887764
No 364
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=48.41 E-value=22 Score=35.47 Aligned_cols=20 Identities=35% Similarity=0.506 Sum_probs=17.1
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 040403 339 KIVVAGAGSAGLGVLNAARK 358 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~ 358 (623)
.|+|+|||.||+..|-.|..
T Consensus 2 dv~IiGaG~aGl~~A~~l~~ 21 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLAD 21 (295)
T ss_pred CEEEECCCHHHHHHHHHHHH
Confidence 48999999999999877754
No 365
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=48.18 E-value=20 Score=39.37 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=26.0
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.+..||||+|+|.||+..|+.|.. + .-+|.++|.+
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~-------------~--~~~ItlI~~~ 42 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDP-------------K--KYNITVISPR 42 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCc-------------C--CCeEEEEcCC
Confidence 466899999999999988765521 1 1359999875
No 366
>PRK07877 hypothetical protein; Provisional
Probab=48.04 E-value=15 Score=43.89 Aligned_cols=110 Identities=16% Similarity=0.187 Sum_probs=68.5
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCC--C-----CCCChhhHHhHHHh-h
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITED--R-----ENIDPDAKPFARKV-N 406 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~--r-----~~l~~~~~~fA~~~-~ 406 (623)
|++.||+|+|+| .|.-+|..|+.+ |+ ..+|.++|-+=+=..+ | .++...|..-|+.. .
T Consensus 105 L~~~~V~IvG~G-lGs~~a~~Lara-----Gv--------vG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~ 170 (722)
T PRK07877 105 LGRLRIGVVGLS-VGHAIAHTLAAE-----GL--------CGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIA 170 (722)
T ss_pred HhcCCEEEEEec-HHHHHHHHHHHc-----cC--------CCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHH
Confidence 889999999998 888898888875 84 2679999987332221 1 12333333333221 1
Q ss_pred hhcccc----cC---CCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecC
Q 040403 407 EISRQG----LW---EGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMS 463 (623)
Q Consensus 407 ~~~~~~----~~---~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLS 463 (623)
++.+.. .. ...++.+.++ +.|++|-++- +.=++-+|... |.....|+|++.+
T Consensus 171 ~inp~i~v~~~~~~i~~~n~~~~l~--~~DlVvD~~D--~~~~R~~ln~~-a~~~~iP~i~~~~ 229 (722)
T PRK07877 171 ELDPYLPVEVFTDGLTEDNVDAFLD--GLDVVVEECD--SLDVKVLLREA-ARARRIPVLMATS 229 (722)
T ss_pred HHCCCCEEEEEeccCCHHHHHHHhc--CCCEEEECCC--CHHHHHHHHHH-HHHcCCCEEEEcC
Confidence 111100 01 1235777777 7899998774 33356677777 7888899999875
No 367
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=47.65 E-value=2.4e+02 Score=28.18 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=15.0
Q ss_pred CCceEEEeCcchHHHHHHHHH
Q 040403 336 PKQKIVVAGAGSAGLGVLNAA 356 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll 356 (623)
++++++|.|+|+.|..+.++.
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a 117 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLA 117 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHH
Confidence 679999999887665544333
No 368
>PLN02985 squalene monooxygenase
Probab=47.60 E-value=25 Score=40.06 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=19.7
Q ss_pred CCceEEEeCcchHHHHHHHHHHH
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARK 358 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~ 358 (623)
.+..|+|+|||.||+..|-.|..
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~ 64 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAK 64 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHH
Confidence 46689999999999999877765
No 369
>PRK06475 salicylate hydroxylase; Provisional
Probab=47.59 E-value=21 Score=38.59 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=21.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCc
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNE 368 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~ 368 (623)
+||+|+|||.||+..|-.|... |++.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~-----G~~V 28 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAAR-----GWAV 28 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-----CCcE
Confidence 7999999999999998877653 7654
No 370
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=47.59 E-value=22 Score=40.33 Aligned_cols=34 Identities=21% Similarity=0.395 Sum_probs=27.1
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
.-.|||+|+|.+|++||..+... |+ ++.++|+..
T Consensus 6 ~~DVvIIGGGi~G~~~A~~la~r-----Gl----------~V~LvEk~d 39 (508)
T PRK12266 6 TYDLLVIGGGINGAGIARDAAGR-----GL----------SVLLCEQDD 39 (508)
T ss_pred cCCEEEECcCHHHHHHHHHHHHC-----CC----------eEEEEecCC
Confidence 34699999999999999888774 85 367777753
No 371
>PRK06184 hypothetical protein; Provisional
Probab=47.29 E-value=24 Score=39.47 Aligned_cols=27 Identities=22% Similarity=0.479 Sum_probs=22.5
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNN 367 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls 367 (623)
++..|+|+|||.+|+..|-+|... |++
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~-----Gi~ 28 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARR-----GVS 28 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC-----CCc
Confidence 356899999999999999888764 864
No 372
>PRK12831 putative oxidoreductase; Provisional
Probab=47.27 E-value=25 Score=39.40 Aligned_cols=35 Identities=29% Similarity=0.389 Sum_probs=28.2
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
-...+|+|+|+|.||+..|..+... |. ++.++|+.
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~-----G~----------~V~v~e~~ 172 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKM-----GY----------DVTIFEAL 172 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhC-----CC----------eEEEEecC
Confidence 3578999999999999999888874 73 57778763
No 373
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=47.19 E-value=55 Score=31.87 Aligned_cols=35 Identities=31% Similarity=0.420 Sum_probs=22.0
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHH
Q 040403 320 GLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAAR 357 (623)
Q Consensus 320 gll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~ 357 (623)
..+.++...+.- ..+++|+|+|+|+.|..++++..
T Consensus 121 ~a~~~l~~~~~~---~~~~~vli~g~~~~G~~~~~~a~ 155 (271)
T cd05188 121 TAYHALRRAGVL---KPGDTVLVLGAGGVGLLAAQLAK 155 (271)
T ss_pred HHHHHHHhccCC---CCCCEEEEECCCHHHHHHHHHHH
Confidence 334445555553 36789999999986655554443
No 374
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=47.04 E-value=3.2e+02 Score=28.37 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=15.9
Q ss_pred CCceEEEeCcchHHHHHHHHHH
Q 040403 336 PKQKIVVAGAGSAGLGVLNAAR 357 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~ 357 (623)
.+++++|+|+|+.|..++.+..
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~ 184 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAA 184 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHH
Confidence 5789999998877766544443
No 375
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=46.85 E-value=22 Score=37.69 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=18.4
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 040403 338 QKIVVAGAGSAGLGVLNAARK 358 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~ 358 (623)
..|+|+|||.||+..|-.|..
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~ 26 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQ 26 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHh
Confidence 479999999999999977765
No 376
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=46.78 E-value=24 Score=41.37 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=20.9
Q ss_pred CCceEEEeCcchHHHHHHHHHHHH
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~ 359 (623)
...+|+|+|+|.||+..|..+...
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~ 215 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRK 215 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC
Confidence 467999999999999999888763
No 377
>PRK09126 hypothetical protein; Provisional
Probab=46.71 E-value=24 Score=37.57 Aligned_cols=31 Identities=32% Similarity=0.506 Sum_probs=23.9
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhh
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFD 372 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~e 372 (623)
+..|+|+|||.||+..|..|... |++..-+|
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~-----G~~v~v~E 33 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGS-----GLKVTLIE 33 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhC-----CCcEEEEe
Confidence 45799999999999999888774 87543333
No 378
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=46.41 E-value=25 Score=41.05 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=28.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCc
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGL 386 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GL 386 (623)
..|+|+|||-+|+.+|-.|.+. | .++.++|++..
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~-----G----------~~V~VlE~~~~ 294 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARR-----G----------WQVTLYEADEA 294 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHC-----C----------CeEEEEecCCC
Confidence 5899999999999999988764 7 35889998743
No 379
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=46.24 E-value=22 Score=39.91 Aligned_cols=36 Identities=19% Similarity=0.332 Sum_probs=32.4
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
|++-+|+++|+|..|.-+++.|+.. |+ ++|.++|.+
T Consensus 18 L~~s~VlliG~gglGsEilKNLvL~-----GI---------g~~tIvD~~ 53 (425)
T cd01493 18 LESAHVCLLNATATGTEILKNLVLP-----GI---------GSFTIVDGS 53 (425)
T ss_pred HhhCeEEEEcCcHHHHHHHHHHHHc-----CC---------CeEEEECCC
Confidence 7888999999999999999999886 96 789999986
No 380
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=45.93 E-value=20 Score=38.31 Aligned_cols=36 Identities=14% Similarity=0.144 Sum_probs=32.5
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
|+..+|+|+|+|.-|.-+|.-|+.+ |+ ++|.++|.+
T Consensus 24 L~~SrVLVVG~GGLGsEVAKnLaLA-----GV---------GsItIvDdD 59 (287)
T PTZ00245 24 LMHTSVALHGVAGAAAEAAKNLVLA-----GV---------RAVAVADEG 59 (287)
T ss_pred HhhCeEEEECCCchHHHHHHHHHHc-----CC---------CeEEEecCC
Confidence 7889999999999999999999886 96 779999986
No 381
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=45.81 E-value=28 Score=39.54 Aligned_cols=154 Identities=19% Similarity=0.277 Sum_probs=87.5
Q ss_pred hhhccCccccCCcccchhhHHHHHHHhhhhcCCCcccccccChhhHHHHHhcCCCCCceEEEEecCceeeccCCCCCccc
Q 040403 129 KVLIANIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAEDRGEMKSMVYNWPAEQVDMIVVTDGSRILGLGDLGVQGI 208 (623)
Q Consensus 129 ~ll~~~~~e~lPivYTPtVg~ac~~~s~~~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG~~Gm 208 (623)
.+..+|..-+=.++..|.+-+-..+==..|-+...-| +++| +-|.. |.==.|+-|
T Consensus 191 ~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~Y---krvG------kawKR---------------GYLLYGPPG- 245 (457)
T KOG0743|consen 191 SVGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFY---KRVG------KAWKR---------------GYLLYGPPG- 245 (457)
T ss_pred ecCCCCCCCccccccChhHHHHHHHHHHHHHhcchHH---HhcC------cchhc---------------cceeeCCCC-
Confidence 3556777666677777776554332222233333333 2222 23532 111145554
Q ss_pred cchhhhHHHHHHhcCCCCCCeeeEEe-eccCCccccccCcCCCCcCCCCCCchhhhHhHHHHHHHHHHhCCceeeecccC
Q 040403 209 GIAVGKLDLYVAAAGINPQRVLPIMI-DVGTTNEKLLKDPLYLGLQEHRLDGDEYVSVIDEFMEAIFTRWPNVIVQFEDF 287 (623)
Q Consensus 209 gI~iGKl~LY~a~gGI~P~~~lPI~L-DvGTnN~~LL~DPlYlG~r~~Rv~g~~Y~~~vdefv~av~~~~P~~lIqfEDf 287 (623)
-||.++-.|.|+-==-...-+.| .|+.| +|.=.-....-++-.|-.|||
T Consensus 246 ---TGKSS~IaAmAn~L~ydIydLeLt~v~~n---------------------------~dLr~LL~~t~~kSIivIEDI 295 (457)
T KOG0743|consen 246 ---TGKSSFIAAMANYLNYDIYDLELTEVKLD---------------------------SDLRHLLLATPNKSILLIEDI 295 (457)
T ss_pred ---CCHHHHHHHHHhhcCCceEEeeeccccCc---------------------------HHHHHHHHhCCCCcEEEEeec
Confidence 47999999999754222444445 44422 332222233335578889999
Q ss_pred CCchHHHHHHHHhccCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCc
Q 040403 288 QSKWAFKLLQRYRYKYRMFNDDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGA 345 (623)
Q Consensus 288 ~~~nAf~lL~ryr~~~~~FNDDiQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GA 345 (623)
..+|.+=++-+++-.-|++ .-.-|||.||||++-=.--. -.+.||+||=.
T Consensus 296 --Dcs~~l~~~~~~~~~~~~~---~~~~VTlSGLLNfiDGlwSs---cg~ERIivFTT 345 (457)
T KOG0743|consen 296 --DCSFDLRERRKKKKENFEG---DLSRVTLSGLLNFLDGLWSS---CGDERIIVFTT 345 (457)
T ss_pred --ccccccccccccccccccC---CcceeehHHhhhhhcccccc---CCCceEEEEec
Confidence 4456654444444444433 46779999999998766555 56789999865
No 382
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=45.74 E-value=31 Score=31.79 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=24.9
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 340 IVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 340 iv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
|+|+|+|+.|.-+|-.|.++ | .++.++++..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-----g----------~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-----G----------HDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-----T----------CEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHC-----C----------CceEEEEccc
Confidence 78999999999998888764 6 4578888754
No 383
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=45.72 E-value=25 Score=38.90 Aligned_cols=30 Identities=23% Similarity=0.413 Sum_probs=25.1
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 340 IVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 340 iv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+||+|||+||+..|..+.+. | .++.++|+.
T Consensus 3 vvVIGaGpaG~~aA~~aa~~-----g----------~~v~lie~~ 32 (463)
T TIGR02053 3 LVIIGSGAAAFAAAIKAAEL-----G----------ASVAMVERG 32 (463)
T ss_pred EEEECCCHHHHHHHHHHHHC-----C----------CeEEEEeCC
Confidence 79999999999998887764 7 468888875
No 384
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=45.67 E-value=27 Score=38.87 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=27.4
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.-.+||+|+|+||+..|..+.+. | .++.++|+.
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~-----G----------~~v~lie~~ 36 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQL-----G----------LKTALVEKG 36 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-----C----------CeEEEEEcc
Confidence 45799999999999998887764 7 578899974
No 385
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=45.62 E-value=2.8e+02 Score=33.20 Aligned_cols=107 Identities=15% Similarity=0.071 Sum_probs=60.8
Q ss_pred HHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCCC--------CCCCHHHHhcccCCcEEEecCCCC
Q 040403 421 EVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNN--------AECTPEEAFSIVGDNIIFASGSPF 492 (623)
Q Consensus 421 e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~--------~E~tpeda~~wT~Grai~AtGsPF 492 (623)
++=+.++|+.+|..+| .++ .-.-+... ..+-+|=|.+=.-||... .+-|-++..++.. -|+..-=.
T Consensus 410 ~le~~~~~~~ilasnT-S~l-~i~~la~~-~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~---~~~~~~gk 483 (708)
T PRK11154 410 EVEQNCAPHTIFASNT-SSL-PIGQIAAA-AARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTV---ALAKKQGK 483 (708)
T ss_pred HHHhhCCCCcEEEECC-CCC-CHHHHHHh-cCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHH---HHHHHcCC
Confidence 3335678999998765 333 33334333 345566688888998753 2233333333221 01111223
Q ss_pred CccccCCCeeccCCCCccccchhHHHHHHHHcCCcccCHHHHHHHH
Q 040403 493 KDVDLGNGHIGHCNQGNNMYLFPGVGLGTLLSGSRIISDGMLQAAA 538 (623)
Q Consensus 493 ~pv~~~~G~~~~p~Q~NN~yiFPGiglG~~~~~a~~Itd~m~~aAA 538 (623)
.||.. .+.||-.=|-+.+|-+--++.+..-- ++.+-+-.|.
T Consensus 484 ~pv~v----~d~pGfi~nRl~~~~~~EA~~lv~eG-v~~~dID~a~ 524 (708)
T PRK11154 484 TPIVV----RDGAGFYVNRILAPYINEAARLLLEG-EPIEHIDAAL 524 (708)
T ss_pred ceEEE----eccCcHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH
Confidence 45555 36788888888888777766665532 4666565554
No 386
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=45.51 E-value=85 Score=32.71 Aligned_cols=38 Identities=32% Similarity=0.441 Sum_probs=27.0
Q ss_pred CCcEEEeccCCCCCCCHHHHHHcc-cCCCCCCEEEecCCCC
Q 040403 427 KPDVLLGLSAVGGLFSKEVLEAMR-GSTSTRPAIFAMSNPT 466 (623)
Q Consensus 427 kptvLIG~S~~~g~Ft~evv~~M~-a~~~erPIIFaLSNPt 466 (623)
+-|++||+|..|. |+++++.++ ++...-|+|.=-+||.
T Consensus 118 ~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~~I~It~~~~ 156 (257)
T cd05007 118 ERDVVIGIAASGR--TPYVLGALRYARARGALTIGIACNPG 156 (257)
T ss_pred CCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 6799999996543 588988884 4445566666666676
No 387
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=45.45 E-value=26 Score=39.21 Aligned_cols=40 Identities=15% Similarity=0.302 Sum_probs=31.1
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCccc
Q 040403 334 DFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLIT 388 (623)
Q Consensus 334 ~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~ 388 (623)
++++.||||+|+|+.|+-||..|... | ++++|.=+.+--.
T Consensus 172 ~~~GKrV~VIG~GaSA~di~~~l~~~-----g----------a~vt~~qRs~~~~ 211 (443)
T COG2072 172 DLRGKRVLVIGAGASAVDIAPELAEV-----G----------ASVTLSQRSPPHI 211 (443)
T ss_pred ccCCCeEEEECCCccHHHHHHHHHhc-----C----------CeeEEEecCCCce
Confidence 48999999999999999988877764 4 5677766655444
No 388
>PRK06753 hypothetical protein; Provisional
Probab=45.16 E-value=26 Score=37.02 Aligned_cols=25 Identities=32% Similarity=0.522 Sum_probs=21.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCc
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNE 368 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~ 368 (623)
+|+|+|||.||+..|..|... |++.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~-----g~~v 26 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQ-----GHEV 26 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----CCcE
Confidence 799999999999999888764 7754
No 389
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=45.13 E-value=44 Score=33.67 Aligned_cols=59 Identities=17% Similarity=0.422 Sum_probs=39.9
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCC
Q 040403 339 KIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGA 417 (623)
Q Consensus 339 riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~ 417 (623)
||+|.|| |-.|-.+++.|.+. | .+++.+++. ..|+. ...
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~-----g----------~~v~~~~r~------~~d~~-------------------~~~ 40 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPE-----G----------RVVVALTSS------QLDLT-------------------DPE 40 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhc-----C----------CEEEEeCCc------ccCCC-------------------CHH
Confidence 5889997 88888887777653 6 357777763 11221 112
Q ss_pred CHHHHHhhcCCcEEEeccCC
Q 040403 418 SLVEVVQQVKPDVLLGLSAV 437 (623)
Q Consensus 418 ~L~e~V~~vkptvLIG~S~~ 437 (623)
++.++++..+||++|=+.+.
T Consensus 41 ~~~~~~~~~~~d~vi~~a~~ 60 (287)
T TIGR01214 41 ALERLLRAIRPDAVVNTAAY 60 (287)
T ss_pred HHHHHHHhCCCCEEEECCcc
Confidence 36777887899999987764
No 390
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=45.09 E-value=24 Score=38.70 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=26.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
-.+||+|+|+||+..|..+.+. | .++.++|++
T Consensus 4 yDvvVIGgGpaGl~aA~~la~~-----g----------~~V~lie~~ 35 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAKA-----G----------WRVALIEQS 35 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHHC-----C----------CeEEEEcCC
Confidence 4699999999999999888764 6 468889975
No 391
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=45.08 E-value=26 Score=38.84 Aligned_cols=31 Identities=32% Similarity=0.490 Sum_probs=26.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
|++|+|+|+||+.-|..+.+. | .++.++|+.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~-----g----------~~V~lie~~ 32 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQN-----G----------KNVTLIDEA 32 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhC-----C----------CcEEEEECC
Confidence 899999999999998888763 7 468899975
No 392
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=45.04 E-value=25 Score=37.05 Aligned_cols=32 Identities=28% Similarity=0.478 Sum_probs=25.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
.|+|+|||-+|+.+|-.|.+. | .++.++|+..
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~-----G----------~~V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARR-----G----------LSVTVIERSS 33 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----C----------CeEEEEeCCC
Confidence 489999999999999888763 6 3477787753
No 393
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=44.98 E-value=27 Score=37.45 Aligned_cols=31 Identities=26% Similarity=0.435 Sum_probs=25.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+|+|+|||-+|+.+|..|... | .+|.++|+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~-----g----------~~V~vle~~ 32 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQA-----G----------HEVTVIDRQ 32 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHC-----C----------CEEEEEeCC
Confidence 699999999999999887653 6 357788875
No 394
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=44.95 E-value=25 Score=43.66 Aligned_cols=35 Identities=29% Similarity=0.435 Sum_probs=28.4
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
....||+|+|||.||+..|..|... |. ++.++|+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~-----G~----------~VtV~Ek~ 571 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARA-----GH----------PVTVFERE 571 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHc-----CC----------eEEEEecc
Confidence 4678999999999999999998764 73 46777764
No 395
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=44.95 E-value=28 Score=37.81 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.2
Q ss_pred CceEEEeCcchHHHHHHHHHHHH
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~ 359 (623)
+-.|+|+|||.||...|..+.+.
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~ 25 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKA 25 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHc
Confidence 35699999999999999998885
No 396
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=44.68 E-value=27 Score=40.03 Aligned_cols=33 Identities=18% Similarity=0.481 Sum_probs=27.1
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+..|+|+|+|..|++||..|... |+ ++.++|+.
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~r-----G~----------~V~LlEk~ 38 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALR-----GL----------RCILVERH 38 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHc-----CC----------eEEEEECC
Confidence 45799999999999999998874 85 46777764
No 397
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=44.64 E-value=25 Score=43.26 Aligned_cols=40 Identities=28% Similarity=0.266 Sum_probs=31.5
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC----CcccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK----GLITE 389 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~----GLi~~ 389 (623)
-.+.||+|+|+|.||+..|..|... |. ++.++|+. |++.-
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~-----G~----------~VtVfE~~~~~GG~l~y 347 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVE-----GF----------PVTVFEAFHDLGGVLRY 347 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHC-----CC----------eEEEEeeCCCCCceEEc
Confidence 3689999999999999999998874 74 46677765 66543
No 398
>PRK08655 prephenate dehydrogenase; Provisional
Probab=44.61 E-value=1e+02 Score=34.52 Aligned_cols=91 Identities=13% Similarity=0.241 Sum_probs=51.0
Q ss_pred eEEEeC-cchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCC
Q 040403 339 KIVVAG-AGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGA 417 (623)
Q Consensus 339 riv~~G-AGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~ 417 (623)
||.|+| .|..|..+|..+... | -+++++|++. +.-..+|... . .....
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~-----G----------~~V~v~~r~~----------~~~~~~a~~~-g-----v~~~~ 50 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEK-----G----------FEVIVTGRDP----------KKGKEVAKEL-G-----VEYAN 50 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHC-----C----------CEEEEEECCh----------HHHHHHHHHc-C-----Ceecc
Confidence 799998 699999998888663 6 2577777631 1111223210 0 11223
Q ss_pred CHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCC
Q 040403 418 SLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSN 464 (623)
Q Consensus 418 ~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSN 464 (623)
++.++++ ++|++| ++. |-..++++++.+.....+.-+|+-+++
T Consensus 51 ~~~e~~~--~aDvVI-lav-p~~~~~~vl~~l~~~l~~~~iViDvsS 93 (437)
T PRK08655 51 DNIDAAK--DADIVI-ISV-PINVTEDVIKEVAPHVKEGSLLMDVTS 93 (437)
T ss_pred CHHHHhc--cCCEEE-Eec-CHHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 5666666 567665 332 223446777666222345567777774
No 399
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=44.48 E-value=27 Score=38.37 Aligned_cols=30 Identities=27% Similarity=0.390 Sum_probs=25.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEcc
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDA 383 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~ 383 (623)
.|+|+|+|.||+..|..+... | .++.++|+
T Consensus 3 DvvVIG~G~aGl~aA~~la~~-----G----------~~v~lie~ 32 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQL-----G----------LKVALVEK 32 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhC-----C----------CeEEEEec
Confidence 589999999999999888763 7 46888887
No 400
>PRK14694 putative mercuric reductase; Provisional
Probab=44.36 E-value=31 Score=38.41 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=27.8
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.+-.++|+|||+||+..|..+.+. | .++.++|+.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~-----g----------~~v~lie~~ 38 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATER-----G----------ARVTLIERG 38 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC-----C----------CcEEEEEcc
Confidence 456799999999999999888774 7 467888864
No 401
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=44.17 E-value=14 Score=42.40 Aligned_cols=30 Identities=27% Similarity=0.552 Sum_probs=20.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhh
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFD 372 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~e 372 (623)
.||+|+|||.+|+..|+.|++. |+..--||
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~-----g~~~~~fE 31 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEE-----GLEVTCFE 31 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHT-----T-EEEEEE
T ss_pred CEEEEECccHHHHHHHHHHHHC-----CCCCeEEe
Confidence 5999999999999999998874 87543333
No 402
>PLN02852 ferredoxin-NADP+ reductase
Probab=44.13 E-value=24 Score=40.35 Aligned_cols=37 Identities=19% Similarity=0.276 Sum_probs=28.7
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
-...||+|+|||.||+..|..|.... . | -+|.++|+.
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~--~-g----------~~Vtv~E~~ 60 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAH--D-G----------ARVDIIERL 60 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhC--C-C----------CeEEEEecC
Confidence 45689999999999999999887531 1 4 357788876
No 403
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=44.07 E-value=37 Score=35.45 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=30.9
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhh-hccCeEEEEccCCc
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFD-SARSQFWVVDAKGL 386 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~e-eA~~~i~lvD~~GL 386 (623)
+..||+++|+|.-|.-+++.|+.. |+...+.- ..--+|.++|.+-+
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~-----G~a~~~~G~~~g~~i~lvD~D~V 56 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARL-----HHALKALGHPGGLAVTVYDDDTV 56 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHc-----cccccccCCCCCCEEEEECCCEE
Confidence 457999999999999999999885 42110000 00018999998733
No 404
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=44.06 E-value=29 Score=38.91 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=22.6
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHH
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~ 359 (623)
+.++||+|+|.|..|.+.|++|...
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~ 30 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAH 30 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHc
Confidence 6688999999999999999998874
No 405
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=43.95 E-value=36 Score=38.02 Aligned_cols=82 Identities=10% Similarity=0.123 Sum_probs=48.2
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLW 414 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~ 414 (623)
|.+.||+|+|-+.-..|+++.+.+ .|+.. ..+..-+..... ..+.. ... . ..
T Consensus 309 l~Gkrvai~~~~~~~~~l~~~l~e-----lGm~v-------~~~~~~~~~~~~----~~~~~---------~~~--~-~~ 360 (432)
T TIGR01285 309 LGGKKVAIAAEPDLLAAWATFFTS-----MGAQI-------VAAVTTTGSPLL----QKLPV---------ETV--V-IG 360 (432)
T ss_pred hCCCEEEEEcCHHHHHHHHHHHHH-----CCCEE-------EEEEeCCCCHHH----HhCCc---------CcE--E-eC
Confidence 677899999988899999999765 49854 222222211100 00100 000 0 11
Q ss_pred CCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHc
Q 040403 415 EGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAM 449 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M 449 (623)
+...|++.+++.+||++||-| ..+.+-+.+
T Consensus 361 D~~~l~~~i~~~~~dliig~s-----~~k~~A~~l 390 (432)
T TIGR01285 361 DLEDLEDLACAAGADLLITNS-----HGRALAQRL 390 (432)
T ss_pred CHHHHHHHHhhcCCCEEEECc-----chHHHHHHc
Confidence 223578889888999999977 335555544
No 406
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=43.87 E-value=34 Score=40.69 Aligned_cols=35 Identities=31% Similarity=0.408 Sum_probs=28.8
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
-.+.+|+|+|||.||+..|..|... |. ++.++|+.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~-----G~----------~V~v~e~~ 463 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKR-----GY----------DVTVFEAL 463 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHC-----CC----------eEEEEecC
Confidence 4678999999999999999988774 73 57788874
No 407
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=43.73 E-value=1.1e+02 Score=33.90 Aligned_cols=163 Identities=22% Similarity=0.318 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHhC---Cce-----eeecccCCCchHHHHHHHHhccCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCC
Q 040403 265 VIDEFMEAIFTRW---PNV-----IVQFEDFQSKWAFKLLQRYRYKYRMFNDDVQGTAGVAVAGLLGAVRAQGRSMIDFP 336 (623)
Q Consensus 265 ~vdefv~av~~~~---P~~-----lIqfEDf~~~nAf~lL~ryr~~~~~FNDDiQGTaaV~lAgll~A~r~~g~~~~~l~ 336 (623)
..+|-+.-|+++| -+. .|+.-|=-...-|+-|---|+.++. |+ .|.|..= +.
T Consensus 154 iseEttTGVH~Lykm~k~G~L~VPAiNVNDSVTKsKFDnLygcreSl~D--------------gi---kraTDvM---~a 213 (434)
T KOG1370|consen 154 ISEETTTGVHNLYKMSKNGKLKVPAINVNDSVTKSKFDNLYGCRESLLD--------------GI---KRATDVM---IA 213 (434)
T ss_pred cchhhhhhHHHHHHHHhCCceecceeeccchhhhhhccccccchhhhhh--------------hh---hhhhhhe---ec
Confidence 4567777777776 111 5666676655555544333333321 22 3455555 78
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEG 416 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~ 416 (623)
...+|+.|=|-.|-|.|.-|... | .++++ |+ +++...--|. -+ .-+.
T Consensus 214 GKv~Vv~GYGdVGKgCaqaLkg~-----g----------~~Viv-------TE----iDPI~ALQAa--Me-----G~~V 260 (434)
T KOG1370|consen 214 GKVAVVCGYGDVGKGCAQALKGF-----G----------ARVIV-------TE----IDPICALQAA--ME-----GYEV 260 (434)
T ss_pred ccEEEEeccCccchhHHHHHhhc-----C----------cEEEE-------ec----cCchHHHHHH--hh-----ccEe
Confidence 88999999999999998776543 5 34443 22 2222211121 12 2345
Q ss_pred CCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCC------------CCCCCC-CCHH-HHhcccCC
Q 040403 417 ASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSN------------PTNNAE-CTPE-EAFSIVGD 482 (623)
Q Consensus 417 ~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSN------------Pt~~~E-~tpe-da~~wT~G 482 (623)
.+|+||++ ..|+++-+.|.-.+.+.+..+.| .+.-|+--+-- |...-| +.|+ |=|.|.+|
T Consensus 261 ~tm~ea~~--e~difVTtTGc~dii~~~H~~~m----k~d~IvCN~Ghfd~EiDv~~L~~~~~~~~~vk~QvD~~~~~~g 334 (434)
T KOG1370|consen 261 TTLEEAIR--EVDIFVTTTGCKDIITGEHFDQM----KNDAIVCNIGHFDTEIDVKWLNTPALTWENVKPQVDRYILPNG 334 (434)
T ss_pred eeHHHhhh--cCCEEEEccCCcchhhHHHHHhC----cCCcEEeccccccceeehhhccCCcceeeecccccceeeccCC
Confidence 78999999 88999999999999999999999 45555543321 221111 1222 56788888
Q ss_pred cEEE
Q 040403 483 NIIF 486 (623)
Q Consensus 483 rai~ 486 (623)
|.|+
T Consensus 335 r~iI 338 (434)
T KOG1370|consen 335 KHII 338 (434)
T ss_pred cEEE
Confidence 8776
No 408
>PLN02463 lycopene beta cyclase
Probab=43.72 E-value=27 Score=39.29 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=19.0
Q ss_pred CceEEEeCcchHHHHHHHHHHH
Q 040403 337 KQKIVVAGAGSAGLGVLNAARK 358 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~ 358 (623)
.-.|+|+|||.||+.+|..+.+
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~ 49 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSE 49 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHH
Confidence 4579999999999999988765
No 409
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=43.72 E-value=31 Score=38.92 Aligned_cols=34 Identities=26% Similarity=0.521 Sum_probs=27.4
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
...+|+|+|+|.||+..|..|... |. +++++|+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~-----g~----------~V~v~e~~ 175 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRA-----GH----------TVTVFERE 175 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHc-----CC----------eEEEEecC
Confidence 457999999999999999888753 63 47888765
No 410
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=43.71 E-value=31 Score=38.01 Aligned_cols=33 Identities=30% Similarity=0.462 Sum_probs=26.6
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+-.+||+|||.||+..|..+.+. | +++.++|+.
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~-----g----------~~v~lie~~ 35 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKL-----G----------KKVALIEKG 35 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-----C----------CeEEEEeCC
Confidence 34699999999999999887763 6 568888873
No 411
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=43.56 E-value=76 Score=32.86 Aligned_cols=88 Identities=23% Similarity=0.234 Sum_probs=52.5
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCC
Q 040403 338 QKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEG 416 (623)
Q Consensus 338 ~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~ 416 (623)
.||.|+|+ |..|-.+++.+... .++ +=..++|++. .+. ... ..+ + ....
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~----~~~---------elvav~d~~~----~~~--~~~-~~~-----~-----i~~~ 51 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAA----EDL---------ELVAAVDRPG----SPL--VGQ-GAL-----G-----VAIT 51 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhC----CCC---------EEEEEEecCC----ccc--ccc-CCC-----C-----cccc
Confidence 48999999 99998888766542 132 3355677652 111 000 000 1 2234
Q ss_pred CCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEe
Q 040403 417 ASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFA 461 (623)
Q Consensus 417 ~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFa 461 (623)
.++.++++ ++|++|=+|. |... .++++.. . ....|+|..
T Consensus 52 ~dl~~ll~--~~DvVid~t~-p~~~-~~~~~~a-l-~~G~~vvig 90 (257)
T PRK00048 52 DDLEAVLA--DADVLIDFTT-PEAT-LENLEFA-L-EHGKPLVIG 90 (257)
T ss_pred CCHHHhcc--CCCEEEECCC-HHHH-HHHHHHH-H-HcCCCEEEE
Confidence 67888887 7999998883 4443 6666654 3 345778855
No 412
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=43.54 E-value=66 Score=32.03 Aligned_cols=81 Identities=23% Similarity=0.320 Sum_probs=48.1
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLW 414 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~ 414 (623)
|++.+|.|+|.|+-|...|.-|.+. |+ ++++..+.| .+.+.+...+ .-
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDS-----G~----------~V~Vglr~~------------s~s~~~A~~~-----Gf 49 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDS-----GV----------NVIVGLREG------------SASWEKAKAD-----GF 49 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHC-----C-----------EEEEEE-TT------------CHHHHHHHHT-----T-
T ss_pred cCCCEEEEECCChHHHHHHHHHHhC-----CC----------CEEEEecCC------------CcCHHHHHHC-----CC
Confidence 5789999999999999999888874 85 344444421 1233332223 23
Q ss_pred CCCCHHHHHhhcCCcEEEecc---CCCCCCCHHHHHHc
Q 040403 415 EGASLVEVVQQVKPDVLLGLS---AVGGLFSKEVLEAM 449 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLIG~S---~~~g~Ft~evv~~M 449 (623)
...++.|+++ +.|+++=+- .++.+|.++|...|
T Consensus 50 ~v~~~~eAv~--~aDvV~~L~PD~~q~~vy~~~I~p~l 85 (165)
T PF07991_consen 50 EVMSVAEAVK--KADVVMLLLPDEVQPEVYEEEIAPNL 85 (165)
T ss_dssp ECCEHHHHHH--C-SEEEE-S-HHHHHHHHHHHHHHHS
T ss_pred eeccHHHHHh--hCCEEEEeCChHHHHHHHHHHHHhhC
Confidence 4568999999 899887443 12344455555555
No 413
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=43.24 E-value=28 Score=38.18 Aligned_cols=38 Identities=29% Similarity=0.434 Sum_probs=32.7
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCc
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGL 386 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GL 386 (623)
|++|=||++|||..|--++++|+.. |. ++|-+||-+-+
T Consensus 72 l~~syVVVVG~GgVGSwv~nmL~RS-----G~---------qKi~iVDfdqV 109 (430)
T KOG2018|consen 72 LTNSYVVVVGAGGVGSWVANMLLRS-----GV---------QKIRIVDFDQV 109 (430)
T ss_pred hcCcEEEEEecCchhHHHHHHHHHh-----cC---------ceEEEechhhc
Confidence 7899999999999999999999885 85 67888886644
No 414
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=43.23 E-value=28 Score=39.04 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=19.3
Q ss_pred CceEEEeCcchHHHHHHHHHHHH
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~ 359 (623)
+-.|+|+|||.||...|..+...
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~ 61 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKG 61 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC
Confidence 35799999999999999887653
No 415
>PRK07045 putative monooxygenase; Reviewed
Probab=43.20 E-value=30 Score=36.99 Aligned_cols=27 Identities=19% Similarity=0.427 Sum_probs=22.0
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCc
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNE 368 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~ 368 (623)
.-+|+|+|||.||+..|-.|... |++.
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~-----G~~v 31 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGAR-----GHSV 31 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhc-----CCcE
Confidence 35899999999999999887764 7653
No 416
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=43.01 E-value=30 Score=38.27 Aligned_cols=33 Identities=30% Similarity=0.658 Sum_probs=23.1
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcc
Q 040403 340 IVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLI 387 (623)
Q Consensus 340 iv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi 387 (623)
|||+|+|.||+.-|-..... | .++.|+++.+.+
T Consensus 2 VVVvGgG~aG~~AAi~AAr~-----G----------~~VlLiE~~~~l 34 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARA-----G----------AKVLLIEKGGFL 34 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHT-----T----------S-EEEE-SSSSS
T ss_pred EEEECccHHHHHHHHHHHHC-----C----------CEEEEEECCccC
Confidence 79999999998887766553 8 468899988865
No 417
>PRK09897 hypothetical protein; Provisional
Probab=42.94 E-value=30 Score=39.91 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=26.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+|+|+|+|.+|+.+|..|+.. +- .-+|.++|+.
T Consensus 3 ~IAIIGgGp~Gl~~a~~L~~~-----~~--------~l~V~lfEp~ 35 (534)
T PRK09897 3 KIAIVGAGPTGIYTFFSLLQQ-----QT--------PLSISIFEQA 35 (534)
T ss_pred eEEEECCcHHHHHHHHHHHhc-----CC--------CCcEEEEecC
Confidence 799999999999999999762 31 1369999984
No 418
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=42.80 E-value=26 Score=37.12 Aligned_cols=41 Identities=17% Similarity=0.361 Sum_probs=32.1
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITE 389 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~ 389 (623)
|++++|+++|.|..|-=+++.|... |+ .+|.++|-+-+=..
T Consensus 28 l~~~~V~VvGiGGVGSw~veALaRs-----Gi---------g~itlID~D~v~vT 68 (263)
T COG1179 28 LKQAHVCVVGIGGVGSWAVEALARS-----GI---------GRITLIDMDDVCVT 68 (263)
T ss_pred HhhCcEEEEecCchhHHHHHHHHHc-----CC---------CeEEEEeccccccc
Confidence 8899999999998886666655553 96 78999999865443
No 419
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=42.77 E-value=27 Score=37.19 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=19.3
Q ss_pred CCceEEEeCcchHHHHHHHHHHH
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARK 358 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~ 358 (623)
++..|+|+|||.||+..|-.|..
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~ 26 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQ 26 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhc
Confidence 34689999999999999877765
No 420
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=42.76 E-value=27 Score=37.34 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=18.9
Q ss_pred CceEEEeCcchHHHHHHHHHHH
Q 040403 337 KQKIVVAGAGSAGLGVLNAARK 358 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~ 358 (623)
...|+|+|||.+|+..|-.|..
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~ 27 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALAD 27 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhc
Confidence 4579999999999999977765
No 421
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=42.72 E-value=1.7e+02 Score=31.93 Aligned_cols=133 Identities=16% Similarity=0.196 Sum_probs=79.0
Q ss_pred HhCCceeeecccCCCchHHHHHHHHhccCCcccc-CcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHH
Q 040403 275 TRWPNVIVQFEDFQSKWAFKLLQRYRYKYRMFND-DVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVL 353 (623)
Q Consensus 275 ~~~P~~lIqfEDf~~~nAf~lL~ryr~~~~~FND-DiQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA 353 (623)
.+|.++++ +-.+... +.+.+.+| ..+||.|- |-.--=+=+|+=++.-.+..|++ |++.+|+++|-+.- +++
T Consensus 99 s~y~D~iv-~R~~~~~-~~~~~a~~-~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~~---l~gl~ia~vGD~~~--~v~ 170 (334)
T PRK01713 99 GRMYDAIE-YRGFKQS-IVNELAEY-AGVPVFNGLTDEFHPTQMLADVLTMIENCDKP---LSEISYVYIGDARN--NMG 170 (334)
T ss_pred HHhCCEEE-EEcCchH-HHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHcCCC---cCCcEEEEECCCcc--CHH
Confidence 44555422 2244333 33444444 36899994 22333455677777777777777 89999999998753 478
Q ss_pred HHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEe
Q 040403 354 NAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLG 433 (623)
Q Consensus 354 ~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG 433 (623)
+-++.++.+- |+ +|.++-.+++.-.. ++-+.-+.+++.... ......++.++++ +.||+.-
T Consensus 171 ~Sl~~~~~~~-g~----------~v~~~~P~~~~p~~--~~~~~~~~~~~~~g~----~~~~~~d~~~a~~--~aDvVyt 231 (334)
T PRK01713 171 NSLLLIGAKL-GM----------DVRICAPKALLPEA--SLVEMCEKFAKESGA----RITVTDDIDKAVK--GVDFVHT 231 (334)
T ss_pred HHHHHHHHHc-CC----------EEEEECCchhcCCH--HHHHHHHHHHHHcCC----eEEEEcCHHHHhC--CCCEEEE
Confidence 8777776664 74 57888887773221 111111223321100 0123478999999 9999986
Q ss_pred c
Q 040403 434 L 434 (623)
Q Consensus 434 ~ 434 (623)
.
T Consensus 232 ~ 232 (334)
T PRK01713 232 D 232 (334)
T ss_pred c
Confidence 4
No 422
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=42.69 E-value=27 Score=39.97 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=25.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
-.|+|+|||.||+..|..+... |. ++.++|+.
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~-----g~----------~V~liE~~ 36 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRA-----KL----------DTLIIEKD 36 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHC-----CC----------CEEEEecC
Confidence 3699999999999998877653 63 57777764
No 423
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=42.61 E-value=68 Score=33.58 Aligned_cols=32 Identities=25% Similarity=0.403 Sum_probs=20.8
Q ss_pred HHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHH
Q 040403 322 LGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAAR 357 (623)
Q Consensus 322 l~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~ 357 (623)
+.+++..+.+ .+++++|.|+|+.|...+.+..
T Consensus 150 ~~~~~~~~~~----~g~~vlV~G~g~vG~~~~~~a~ 181 (347)
T PRK10309 150 LHAFHLAQGC----EGKNVIIIGAGTIGLLAIQCAV 181 (347)
T ss_pred HHHHHhcCCC----CCCEEEEECCCHHHHHHHHHHH
Confidence 3445544444 5789999999887766554433
No 424
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=42.52 E-value=31 Score=38.00 Aligned_cols=35 Identities=31% Similarity=0.410 Sum_probs=28.3
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
+...|+|+|||.||+..|..+.+. | .++.++|++.
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~-----G----------~~v~liE~~~ 38 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKL-----G----------KRVAVIERYR 38 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC-----C----------CEEEEEeccc
Confidence 346799999999999998887764 6 5788999853
No 425
>PRK06199 ornithine cyclodeaminase; Validated
Probab=42.37 E-value=2.4e+02 Score=31.27 Aligned_cols=88 Identities=17% Similarity=0.133 Sum_probs=53.5
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhh-hccc-cc
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNE-ISRQ-GL 413 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~-~~~~-~~ 413 (623)
.-.++.|+|+|.-+...++.++.. .+. .++|+++|+. .+.-..|++.-.. +.++ ..
T Consensus 154 da~~l~iiG~G~QA~~~l~a~~~v------~~~------i~~V~v~~r~----------~~~a~~f~~~~~~~~~~~~~v 211 (379)
T PRK06199 154 DSKVVGLLGPGVMGKTILAAFMAV------CPG------IDTIKIKGRG----------QKSLDSFATWVAETYPQITNV 211 (379)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHh------cCC------ccEEEEECCC----------HHHHHHHHHHHHHhcCCCceE
Confidence 357999999998887776665552 110 3678888874 1222345532111 1111 02
Q ss_pred CCCCCHHHHHhhcCCcEEEeccC-C------CCCCCHHHHH
Q 040403 414 WEGASLVEVVQQVKPDVLLGLSA-V------GGLFSKEVLE 447 (623)
Q Consensus 414 ~~~~~L~e~V~~vkptvLIG~S~-~------~g~Ft~evv~ 447 (623)
....+.+|+|+ +.||++-+.+ . ...|..++++
T Consensus 212 ~~~~s~~eav~--~ADIVvtaT~s~~~~~s~~Pv~~~~~lk 250 (379)
T PRK06199 212 EVVDSIEEVVR--GSDIVTYCNSGETGDPSTYPYVKREWVK 250 (379)
T ss_pred EEeCCHHHHHc--CCCEEEEccCCCCCCCCcCcEecHHHcC
Confidence 23578999998 8999997542 1 1567777765
No 426
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=42.36 E-value=26 Score=38.66 Aligned_cols=25 Identities=28% Similarity=0.569 Sum_probs=22.3
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHH
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTM 360 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m 360 (623)
+..+++++|.|++|+|+|..+..-+
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl 62 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKL 62 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhc
Confidence 6789999999999999999988754
No 427
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=42.25 E-value=31 Score=35.09 Aligned_cols=31 Identities=29% Similarity=0.530 Sum_probs=26.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+|+|+|+|..|..+|+.|.+. | .++.++|.+
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~-----g----------~~Vv~Id~d 32 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEE-----G----------HNVVLIDRD 32 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhC-----C----------CceEEEEcC
Confidence 799999999999999999874 6 567888875
No 428
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=42.12 E-value=26 Score=37.02 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=20.7
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcC-CCc
Q 040403 340 IVVAGAGSAGLGVLNAARKTMARMLG-NNE 368 (623)
Q Consensus 340 iv~~GAGsAg~GIA~ll~~~m~~~~G-ls~ 368 (623)
|+|+|||.||+..|..|... | ++.
T Consensus 2 v~IvGaG~aGl~~A~~L~~~-----G~~~v 26 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRL-----GKIKI 26 (382)
T ss_pred EEEECccHHHHHHHHHHhcC-----CCceE
Confidence 89999999999999988874 8 654
No 429
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=41.96 E-value=69 Score=33.30 Aligned_cols=47 Identities=38% Similarity=0.543 Sum_probs=28.7
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEcc
Q 040403 319 AGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDA 383 (623)
Q Consensus 319 Agll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~ 383 (623)
+..+.++...+.. .+++|+|.|+|+.|...+.+... .|. ++++.+|+
T Consensus 150 ~ta~~~l~~~~~~----~g~~vlV~G~G~vG~~~~~~ak~-----~G~---------~~vi~~~~ 196 (339)
T cd08239 150 GTAYHALRRVGVS----GRDTVLVVGAGPVGLGALMLARA-----LGA---------EDVIGVDP 196 (339)
T ss_pred HHHHHHHHhcCCC----CCCEEEEECCCHHHHHHHHHHHH-----cCC---------CEEEEECC
Confidence 3445555555544 58899999988766555444332 273 35777765
No 430
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=41.93 E-value=28 Score=39.22 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=27.7
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
+..|||+|+|.+|+++|..+... |+ ++.+++++-
T Consensus 6 ~~DVvIIGGGi~G~~~A~~la~r-----G~----------~V~LlEk~d 39 (502)
T PRK13369 6 TYDLFVIGGGINGAGIARDAAGR-----GL----------KVLLCEKDD 39 (502)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC-----CC----------cEEEEECCC
Confidence 45799999999999999999874 85 477788663
No 431
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=41.93 E-value=50 Score=37.03 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=23.2
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNN 367 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls 367 (623)
|.+.|+++++.+.-..+++++|.+ .|+.
T Consensus 324 L~Gkrv~i~~g~~~~~~l~~~l~e-----lGme 351 (456)
T TIGR01283 324 LKGKKAAIYTGGVKSWSLVSALQD-----LGME 351 (456)
T ss_pred cCCCEEEEEcCCchHHHHHHHHHH-----CCCE
Confidence 888999999888888999988765 3973
No 432
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=41.92 E-value=94 Score=32.82 Aligned_cols=85 Identities=26% Similarity=0.336 Sum_probs=50.4
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEG 416 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~ 416 (623)
.+||.|+|.|+.+. +|+.+...|.+- |. +.++++....... ..+ .
T Consensus 47 ~~~I~i~G~G~S~~-~a~~~~~~l~~~-g~----------~~~~~~~~~~~~~----------~~~----~--------- 91 (326)
T PRK10892 47 KGKVVVMGMGKSGH-IGRKMAATFAST-GT----------PSFFVHPGEAAHG----------DLG----M--------- 91 (326)
T ss_pred CCeEEEEeCcHhHH-HHHHHHHHHhcC-Cc----------eeEEeChHHhhcc----------ccc----c---------
Confidence 36999999998775 777777776664 63 3343332110000 000 0
Q ss_pred CCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcc-cCCCCCCEEEecCCCC
Q 040403 417 ASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMR-GSTSTRPAIFAMSNPT 466 (623)
Q Consensus 417 ~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~-a~~~erPIIFaLSNPt 466 (623)
+. +-|++|++|..| =|+++++.+| ++...-|+|-==+||.
T Consensus 92 ------~~--~~d~~I~iS~sG--~t~~~~~~~~~ak~~g~~vi~iT~~~~ 132 (326)
T PRK10892 92 ------VT--PQDVVIAISNSG--ESSEILALIPVLKRLHVPLICITGRPE 132 (326)
T ss_pred ------CC--CCCEEEEEeCCC--CCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 11 568999999544 3688888884 4445556665555554
No 433
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=41.91 E-value=38 Score=35.68 Aligned_cols=37 Identities=24% Similarity=0.312 Sum_probs=29.5
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcc
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLI 387 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi 387 (623)
...+|+|+|+|-+|+.+|-.|... | .+|.++|++..-
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~-----G----------~~V~vie~~~~~ 39 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAER-----G----------ADVTVLEAGEAG 39 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHc-----C----------CEEEEEecCccC
Confidence 467999999999999998888774 7 267888876554
No 434
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=41.90 E-value=20 Score=41.25 Aligned_cols=24 Identities=21% Similarity=0.558 Sum_probs=22.0
Q ss_pred CCCceEEEeCcchHHHHHHHHHHH
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARK 358 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~ 358 (623)
++++||||+|+|..|+-||..|..
T Consensus 181 f~gKrVlVVG~g~Sg~DIa~el~~ 204 (531)
T PF00743_consen 181 FKGKRVLVVGGGNSGADIAVELSR 204 (531)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHTT
T ss_pred cCCCEEEEEeCCHhHHHHHHHHHH
Confidence 889999999999999999988755
No 435
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=41.69 E-value=88 Score=32.59 Aligned_cols=28 Identities=25% Similarity=0.248 Sum_probs=22.4
Q ss_pred EeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 342 VAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 342 ~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
|+|.|..|..+|..|... | .+++++|+.
T Consensus 1 ~IGlG~mG~~mA~~L~~~-----G----------~~V~v~dr~ 28 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKA-----G----------HPVRVFDLF 28 (288)
T ss_pred CCcccHhHHHHHHHHHhC-----C----------CeEEEEeCC
Confidence 689999999999998764 6 357777874
No 436
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=41.52 E-value=31 Score=42.97 Aligned_cols=34 Identities=32% Similarity=0.455 Sum_probs=27.4
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
...+|+|+|||.||+..|..|... |. ++.++|+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~-----G~----------~VTV~Ek~ 569 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARA-----GH----------PVTVFEKK 569 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC-----CC----------eEEEEecc
Confidence 457999999999999999888763 73 47777764
No 437
>PLN02527 aspartate carbamoyltransferase
Probab=41.47 E-value=4.8e+02 Score=28.08 Aligned_cols=133 Identities=17% Similarity=0.208 Sum_probs=77.9
Q ss_pred HHhCCce-eeecccCCCchHHHHHHHHhccCCccc--cCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHH
Q 040403 274 FTRWPNV-IVQFEDFQSKWAFKLLQRYRYKYRMFN--DDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGL 350 (623)
Q Consensus 274 ~~~~P~~-lIqfEDf~~~nAf~lL~ryr~~~~~FN--DDiQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~ 350 (623)
-.+|-++ .|- .+......+ +.+| ..+||.| |+...-=+=+||=++.-.+..| + +++.||+++|.+.=+
T Consensus 93 ls~y~D~iviR--~~~~~~~~~-~a~~-~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g-~---l~g~kva~vGD~~~~- 163 (306)
T PLN02527 93 VEGYSDIIVLR--HFESGAARR-AAAT-AEIPVINAGDGPGQHPTQALLDVYTIQREIG-R---LDGIKVGLVGDLANG- 163 (306)
T ss_pred HHHhCcEEEEE--CCChhHHHH-HHHh-CCCCEEECCCCCCCChHHHHHHHHHHHHHhC-C---cCCCEEEEECCCCCC-
Confidence 3556553 333 454444433 3444 3699999 4444555566777777666665 4 899999999988422
Q ss_pred HHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcE
Q 040403 351 GVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDV 430 (623)
Q Consensus 351 GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptv 430 (623)
-+++-++.++.+-.|+ +|+++-.+|+- +++....+++.. . .. -....++.++++ +.||
T Consensus 164 rv~~Sl~~~~~~~~g~----------~v~~~~P~~~~------~~~~~~~~~~~~-g-~~--~~~~~d~~~a~~--~aDv 221 (306)
T PLN02527 164 RTVRSLAYLLAKYEDV----------KIYFVAPDVVK------MKDDIKDYLTSK-G-VE--WEESSDLMEVAS--KCDV 221 (306)
T ss_pred hhHHHHHHHHHhcCCC----------EEEEECCCccC------CCHHHHHHHHHc-C-CE--EEEEcCHHHHhC--CCCE
Confidence 2455544443331143 57777777762 222223344321 1 00 122467999999 9999
Q ss_pred EEeccCC
Q 040403 431 LLGLSAV 437 (623)
Q Consensus 431 LIG~S~~ 437 (623)
+.-.+.+
T Consensus 222 vyt~~~q 228 (306)
T PLN02527 222 LYQTRIQ 228 (306)
T ss_pred EEECCcc
Confidence 9987754
No 438
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=41.47 E-value=1.1e+02 Score=33.57 Aligned_cols=34 Identities=18% Similarity=0.305 Sum_probs=27.4
Q ss_pred CCceEEEeC-cchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 336 PKQKIVVAG-AGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 336 ~d~riv~~G-AGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
...+|.|+| .|..|-.+|..+..+ |. .++++|++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~-----G~----------~V~~~d~~ 131 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLS-----GY----------QVRILEQD 131 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHC-----CC----------eEEEeCCC
Confidence 347899998 999999999988874 73 47788874
No 439
>PRK05993 short chain dehydrogenase; Provisional
Probab=41.46 E-value=1.2e+02 Score=30.72 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=20.6
Q ss_pred CceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 337 KQKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 337 d~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
..+++|.|| |..|..+|+.+ .++ | -++++++++
T Consensus 4 ~k~vlItGasggiG~~la~~l----~~~-G----------~~Vi~~~r~ 37 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARAL----QSD-G----------WRVFATCRK 37 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHH----HHC-C----------CEEEEEECC
Confidence 358999998 44444455544 444 6 357877764
No 440
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=41.14 E-value=82 Score=33.10 Aligned_cols=31 Identities=29% Similarity=0.385 Sum_probs=25.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+|.|+|.|.-|..+|..+... | .+++++|+.
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~-----G----------~~V~v~d~~ 33 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQ-----G----------HQLQVFDVN 33 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHC-----C----------CeEEEEcCC
Confidence 799999999999999998764 6 357778773
No 441
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=41.13 E-value=41 Score=36.24 Aligned_cols=38 Identities=24% Similarity=0.385 Sum_probs=29.5
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCc
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGL 386 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GL 386 (623)
++-.|+|+|||.+|+.+|-.|... .|. +++.++|++.+
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~----~g~---------~~V~vle~~~~ 66 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKE----HGI---------TNVAVLEKGWL 66 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHh----cCC---------CeEEEEEcccc
Confidence 456799999999999999888762 152 46888988643
No 442
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=40.99 E-value=1.3e+02 Score=31.45 Aligned_cols=95 Identities=16% Similarity=0.225 Sum_probs=53.0
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLW 414 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~ 414 (623)
.+..||-|+|.|..|..+++.|... .. |+ +=.+++|+. .+..+.++..... ..
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~--~~-~~---------el~aV~dr~----------~~~a~~~a~~~g~-----~~ 56 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRG--LP-GL---------TLSAVAVRD----------PQRHADFIWGLRR-----PP 56 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhc--CC-Ce---------EEEEEECCC----------HHHHHHHHHhcCC-----Cc
Confidence 3457999999999998888777541 01 21 223466653 1223344421100 12
Q ss_pred CCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecC
Q 040403 415 EGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMS 463 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLS 463 (623)
...++.|.+. +||+++=++. ... -.|+++.. .+ ...++|. +|
T Consensus 57 ~~~~~eell~--~~D~Vvi~tp-~~~-h~e~~~~a-L~-aGk~Vi~-~s 98 (271)
T PRK13302 57 PVVPLDQLAT--HADIVVEAAP-ASV-LRAIVEPV-LA-AGKKAIV-LS 98 (271)
T ss_pred ccCCHHHHhc--CCCEEEECCC-cHH-HHHHHHHH-HH-cCCcEEE-ec
Confidence 3567888886 7899886653 333 35555443 22 3356654 44
No 443
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=40.92 E-value=30 Score=36.29 Aligned_cols=20 Identities=35% Similarity=0.609 Sum_probs=17.5
Q ss_pred EEEeCcchHHHHHHHHHHHH
Q 040403 340 IVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 340 iv~~GAGsAg~GIA~ll~~~ 359 (623)
|+|+|||.||+-.|..|...
T Consensus 2 ViIvGaG~aGl~~A~~L~~~ 21 (385)
T TIGR01988 2 IVIVGGGMVGLALALALARS 21 (385)
T ss_pred EEEECCCHHHHHHHHHHhcC
Confidence 89999999999999877763
No 444
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=40.91 E-value=41 Score=35.14 Aligned_cols=35 Identities=29% Similarity=0.366 Sum_probs=25.3
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
.+--++|+|||+||+..|..|... |+ ++.+++++=
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~-----g~----------kV~v~E~~~ 50 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKA-----GL----------KVAVIERKL 50 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHH-----TS-----------EEEEESSS
T ss_pred ccCCEEEECCChhHHHHHHHHHHC-----CC----------eEEEEecCC
Confidence 456799999999999999888775 85 567777763
No 445
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=40.86 E-value=74 Score=33.94 Aligned_cols=39 Identities=26% Similarity=0.422 Sum_probs=27.8
Q ss_pred CCcEEEeccCCCCCCCHHHHHHcc-cCCCCCCEEEecCCCCC
Q 040403 427 KPDVLLGLSAVGGLFSKEVLEAMR-GSTSTRPAIFAMSNPTN 467 (623)
Q Consensus 427 kptvLIG~S~~~g~Ft~evv~~M~-a~~~erPIIFaLSNPt~ 467 (623)
+-|++||+|..|. |++++..++ ++...-|+|.=-+||.+
T Consensus 126 ~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~tIaIT~~~~s 165 (291)
T TIGR00274 126 KNDVVVGIAASGR--TPYVIAGLQYARSLGALTISIACNPKS 165 (291)
T ss_pred CCCEEEEEeCCCC--cHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 6799999996554 799999884 33344577776667763
No 446
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=40.84 E-value=31 Score=38.04 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=21.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCc
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNE 368 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~ 368 (623)
-.|+|+|||.||...|-.+... |++.
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~-----G~~V 31 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLARE-----GAQV 31 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhC-----CCeE
Confidence 5799999999999999887663 8654
No 447
>PRK07588 hypothetical protein; Provisional
Probab=40.70 E-value=33 Score=36.70 Aligned_cols=30 Identities=27% Similarity=0.458 Sum_probs=22.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhh
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFD 372 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~e 372 (623)
.+|+|+|||.||+..|-.|... |++..-+|
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~-----G~~v~v~E 30 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRY-----GHEPTLIE 30 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHC-----CCceEEEe
Confidence 3799999999999999887753 87643333
No 448
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=40.69 E-value=39 Score=37.31 Aligned_cols=25 Identities=40% Similarity=0.744 Sum_probs=21.3
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHH
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~ 359 (623)
+...+|+|+|+|.+|+++|+.|.+.
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~ 27 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKN 27 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC
Confidence 5678999999999999998887653
No 449
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=40.68 E-value=55 Score=34.65 Aligned_cols=41 Identities=27% Similarity=0.521 Sum_probs=31.0
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCc
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGL 386 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GL 386 (623)
.++|+|+|+|.+|+-+|..|.....+. |. +.+|.+++...+
T Consensus 145 ~~~vvVvG~G~~g~E~A~~l~~~~~~~-g~--------~~~V~li~~~~~ 185 (364)
T TIGR03169 145 TKRLAVVGGGAAGVEIALALRRRLPKR-GL--------RGQVTLIAGASL 185 (364)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHHhc-CC--------CceEEEEeCCcc
Confidence 469999999999999999998866554 53 357888754333
No 450
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=40.57 E-value=2.3e+02 Score=25.16 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=17.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHh
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARM 363 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~ 363 (623)
||.|+|.|+.. -+|.-+...|.+.
T Consensus 1 ~I~i~G~G~S~-~~a~~~~~~l~~~ 24 (126)
T cd05008 1 RILIVGCGTSY-HAALVAKYLLERL 24 (126)
T ss_pred CEEEEEccHHH-HHHHHHHHHHHHh
Confidence 58999999666 4777777766664
No 451
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=40.54 E-value=1.3e+02 Score=33.54 Aligned_cols=117 Identities=20% Similarity=0.326 Sum_probs=68.1
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHh---hhhcccc
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKV---NEISRQG 412 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~---~~~~~~~ 412 (623)
....++++|-|..|+..-.-...+ | .++|+-+|. ++.|..+|+.- +-+.
T Consensus 185 ~G~tvaV~GlGgVGlaaI~gA~~a-----g---------A~~IiAvD~-----------~~~Kl~~A~~fGAT~~vn--- 236 (366)
T COG1062 185 PGDTVAVFGLGGVGLAAIQGAKAA-----G---------AGRIIAVDI-----------NPEKLELAKKFGATHFVN--- 236 (366)
T ss_pred CCCeEEEEeccHhHHHHHHHHHHc-----C---------CceEEEEeC-----------CHHHHHHHHhcCCceeec---
Confidence 577999999998877664444433 6 367888886 57788888641 1111
Q ss_pred cCCCCCHHHHHhhcC---CcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccCCcEEE
Q 040403 413 LWEGASLVEVVQQVK---PDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIF 486 (623)
Q Consensus 413 ~~~~~~L~e~V~~vk---ptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~Grai~ 486 (623)
..+..++.++|+.+- +|.-|=+.+....+ +.-++. ...--+-+|..+++|...-...|-|. +-||.+-
T Consensus 237 ~~~~~~vv~~i~~~T~gG~d~~~e~~G~~~~~-~~al~~--~~~~G~~v~iGv~~~~~~i~~~~~~l---v~gr~~~ 307 (366)
T COG1062 237 PKEVDDVVEAIVELTDGGADYAFECVGNVEVM-RQALEA--THRGGTSVIIGVAGAGQEISTRPFQL---VTGRVWK 307 (366)
T ss_pred chhhhhHHHHHHHhcCCCCCEEEEccCCHHHH-HHHHHH--HhcCCeEEEEecCCCCceeecChHHe---eccceEE
Confidence 112225777776553 45555555433322 112222 22256789999999995444444444 3367764
No 452
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=40.40 E-value=47 Score=36.59 Aligned_cols=49 Identities=27% Similarity=0.343 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEcc
Q 040403 317 AVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDA 383 (623)
Q Consensus 317 ~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~ 383 (623)
-|+--+-|+|..+.+ ..+|+||+|||..|+. .+++.- ..|. ++|.++|-
T Consensus 154 PLsV~~HAcr~~~vk----~Gs~vLV~GAGPIGl~--t~l~Ak---a~GA---------~~VVi~d~ 202 (354)
T KOG0024|consen 154 PLSVGVHACRRAGVK----KGSKVLVLGAGPIGLL--TGLVAK---AMGA---------SDVVITDL 202 (354)
T ss_pred chhhhhhhhhhcCcc----cCCeEEEECCcHHHHH--HHHHHH---HcCC---------CcEEEeec
Confidence 366677899999998 5789999999998643 344331 1364 56887775
No 453
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=40.34 E-value=2e+02 Score=31.50 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=21.8
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHH
Q 040403 320 GLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARK 358 (623)
Q Consensus 320 gll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~ 358 (623)
..+.|++..+.. .+++++|.|+|+.|..++.+...
T Consensus 173 ta~~a~~~~~~~----~g~~VlV~G~G~iG~~aiqlAk~ 207 (393)
T TIGR02819 173 TGYHGAVTAGVG----PGSTVYIAGAGPVGLAAAASAQL 207 (393)
T ss_pred HHHHHHHhcCCC----CCCEEEEECCCHHHHHHHHHHHH
Confidence 334455544333 57899999998877666554443
No 454
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=40.31 E-value=37 Score=36.59 Aligned_cols=34 Identities=21% Similarity=0.384 Sum_probs=26.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
..|+|+|||.+|+.+|-.|... ..| .++.++|+.
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~---~~g----------~~V~llE~~ 36 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQER---YPG----------ARIAVLEKE 36 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHh---CCC----------CeEEEEeCC
Confidence 4699999999999999888763 013 468889886
No 455
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=40.28 E-value=37 Score=36.84 Aligned_cols=186 Identities=18% Similarity=0.229 Sum_probs=101.7
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCC-CCCChhhHHhHHHhhhhcccccC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDR-ENIDPDAKPFARKVNEISRQGLW 414 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r-~~l~~~~~~fA~~~~~~~~~~~~ 414 (623)
..-||.|+|| || ||.+=|...|+....+| .+-|+|-.+. .+- .||.+...+- ...+ ..
T Consensus 27 ~~~KVAvlGA--aG-GIGQPLSLLlK~np~Vs---------~LaLYDi~~~--~GVaaDlSHI~T~s-----~V~g--~~ 85 (345)
T KOG1494|consen 27 RGLKVAVLGA--AG-GIGQPLSLLLKLNPLVS---------ELALYDIANT--PGVAADLSHINTNS-----SVVG--FT 85 (345)
T ss_pred CcceEEEEec--CC-ccCccHHHHHhcCcccc---------eeeeeecccC--CcccccccccCCCC-----ceec--cC
Confidence 5789999998 34 78777777766554444 3667776522 111 1233221100 0111 12
Q ss_pred CCCCHHHHHhhcCCcEEE---eccCCCCC-----C--CHHHH----HHcccCCCCCCEEEecCCCCCCCCCCHHHHhccc
Q 040403 415 EGASLVEVVQQVKPDVLL---GLSAVGGL-----F--SKEVL----EAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIV 480 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLI---G~S~~~g~-----F--t~evv----~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT 480 (623)
+...|+++++ +.|+.| |+-..||. | +--|| .+. ++.|++-+|.-.|||....=--+.+.++..
T Consensus 86 g~~~L~~al~--~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~ai-a~~cP~A~i~vIsNPVNstVPIaaevlKk~ 162 (345)
T KOG1494|consen 86 GADGLENALK--GADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAI-AKCCPNALILVISNPVNSTVPIAAEVLKKA 162 (345)
T ss_pred ChhHHHHHhc--CCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHH-HhhCccceeEeecCcccccchHHHHHHHHc
Confidence 3457999999 999988 44444553 2 22334 344 789999999999999853322233444431
Q ss_pred ---CCcEEEe-----------------cCCCCCccccC-----CCeeccC--CCCccccchhHHHHHHHH----------
Q 040403 481 ---GDNIIFA-----------------SGSPFKDVDLG-----NGHIGHC--NQGNNMYLFPGVGLGTLL---------- 523 (623)
Q Consensus 481 ---~Grai~A-----------------tGsPF~pv~~~-----~G~~~~p--~Q~NN~yiFPGiglG~~~---------- 523 (623)
|-+-||. ..+|-..|..| .|.|..| +||+-.+-|.===+=.+.
T Consensus 163 G~ydpkklfGVTtLDvVRA~tFv~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~p~~~~~~~~~~~Lt~RiQ~gGtEV 242 (345)
T KOG1494|consen 163 GVYDPKKLFGVTTLDVVRANTFVAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCKPPFRFTDDEIEALTHRIQNGGTEV 242 (345)
T ss_pred CCCCccceeceehhhhhhHHHHHHHHhCCCchhcCCcceecCcCCceEeeecccCCCcccCCHHHHHHHHHHHHhCCceE
Confidence 2344543 12332212221 4667755 888877777642222221
Q ss_pred ----cCCcccCHHHHHHHHHHHHccc
Q 040403 524 ----SGSRIISDGMLQAAAECLAEYM 545 (623)
Q Consensus 524 ----~~a~~Itd~m~~aAA~aLA~~v 545 (623)
+++-.-|-.|-+|+|+-.-+++
T Consensus 243 V~AKaGaGSATLSMAyAga~fa~s~l 268 (345)
T KOG1494|consen 243 VKAKAGAGSATLSMAYAGAKFADSLL 268 (345)
T ss_pred EEeccCCCchhhhHHHHHHHHHHHHH
Confidence 2333456677777776544443
No 456
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=40.17 E-value=34 Score=38.01 Aligned_cols=33 Identities=30% Similarity=0.499 Sum_probs=26.6
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+--++|+|+|+||+..|..+.+. | .++.++|+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~-----G----------~~V~liE~~ 34 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEH-----G----------AKALLVEAK 34 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHC-----C----------CcEEEeccc
Confidence 34689999999999998887764 7 467888875
No 457
>PRK14852 hypothetical protein; Provisional
Probab=40.14 E-value=31 Score=42.75 Aligned_cols=109 Identities=16% Similarity=0.150 Sum_probs=63.7
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCC--C------CCCChhhHHhHHHh-
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITED--R------ENIDPDAKPFARKV- 405 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~--r------~~l~~~~~~fA~~~- 405 (623)
|+..||+|+|+|..|.-||..|+.+ |+ ++|.++|-+=+=..+ | .++...|..-++..
T Consensus 330 L~~srVlVvGlGGlGs~ia~~LAra-----GV---------G~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l 395 (989)
T PRK14852 330 LLRSRVAIAGLGGVGGIHLMTLART-----GI---------GNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERA 395 (989)
T ss_pred HhcCcEEEECCcHHHHHHHHHHHHc-----CC---------CeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHH
Confidence 8899999999999998888888885 96 789999987332221 2 12333333333211
Q ss_pred hhhccc------cc-CCCCCHHHHHhhcCCcEEEeccCCCCCCCH---HHHHHcccCCCCCCEEEecC
Q 040403 406 NEISRQ------GL-WEGASLVEVVQQVKPDVLLGLSAVGGLFSK---EVLEAMRGSTSTRPAIFAMS 463 (623)
Q Consensus 406 ~~~~~~------~~-~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~---evv~~M~a~~~erPIIFaLS 463 (623)
.++.+. .. -...++.+.++ +.|++|-+. .-|+- ..+-.. |.....|+|.+-+
T Consensus 396 ~~INP~v~I~~~~~~I~~en~~~fl~--~~DiVVDa~---D~~~~~~rr~l~~~-c~~~~IP~I~ag~ 457 (989)
T PRK14852 396 LSVNPFLDIRSFPEGVAAETIDAFLK--DVDLLVDGI---DFFALDIRRRLFNR-ALELGIPVITAGP 457 (989)
T ss_pred HHHCCCCeEEEEecCCCHHHHHHHhh--CCCEEEECC---CCccHHHHHHHHHH-HHHcCCCEEEeec
Confidence 111111 00 01234666666 778888544 22443 233334 5666788887665
No 458
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=40.02 E-value=36 Score=36.62 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=22.2
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCc
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNE 368 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~ 368 (623)
..+|+|+|||.||+-.|-.|... |++.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~-----G~~v 28 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLA-----GIDS 28 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhc-----CCCE
Confidence 35799999999999998887664 8764
No 459
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=39.86 E-value=39 Score=36.51 Aligned_cols=135 Identities=16% Similarity=0.261 Sum_probs=76.4
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCc-ccCCCCCCChhhHHhHHHhhhhccccc
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGL-ITEDRENIDPDAKPFARKVNEISRQGL 413 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GL-i~~~r~~l~~~~~~fA~~~~~~~~~~~ 413 (623)
.+..||.|+|+|.-|+.+|-.|+.- |++ +++.++|-.== +-..+-||. |-.+|-+..+-
T Consensus 18 ~~~~KItVVG~G~VGmAca~siL~k-----~La--------del~lvDv~~dklkGE~MDLq-H~s~f~~~~~V------ 77 (332)
T KOG1495|consen 18 FKHNKITVVGVGQVGMACAISILLK-----GLA--------DELVLVDVNEDKLKGEMMDLQ-HGSAFLSTPNV------ 77 (332)
T ss_pred ccCceEEEEccchHHHHHHHHHHHh-----hhh--------hceEEEecCcchhhhhhhhhc-cccccccCCce------
Confidence 6789999999999999999999875 875 57889996411 111122343 22344321110
Q ss_pred CCCCCHHHHHhhcCCcEEEeccCCCCC--------------CCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcc
Q 040403 414 WEGASLVEVVQQVKPDVLLGLSAVGGL--------------FSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSI 479 (623)
Q Consensus 414 ~~~~~L~e~V~~vkptvLIG~S~~~g~--------------Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~w 479 (623)
...++... ....++.|=+.|..+. .=+.+|... .++.++-|++-.|||. ++.-=-+++.
T Consensus 78 ~~~~Dy~~---sa~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~l-v~ySpd~~llvvSNPV---DilTYv~wKL 150 (332)
T KOG1495|consen 78 VASKDYSV---SANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPAL-VKYSPDCILLVVSNPV---DILTYVTWKL 150 (332)
T ss_pred EecCcccc---cCCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHH-hhcCCCeEEEEecCch---HHHHHHHHHH
Confidence 00111111 1134445533332211 125677777 8899999999999998 3333333333
Q ss_pred cC--CcEEEecCCCCCccc
Q 040403 480 VG--DNIIFASGSPFKDVD 496 (623)
Q Consensus 480 T~--Grai~AtGsPF~pv~ 496 (623)
|. -..+|.||.=.+...
T Consensus 151 SgfP~nRViGsGcnLDsaR 169 (332)
T KOG1495|consen 151 SGFPKNRVIGSGCNLDSAR 169 (332)
T ss_pred cCCcccceeccCcCccHHH
Confidence 21 134567776655554
No 460
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=39.83 E-value=2.8e+02 Score=28.28 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=16.0
Q ss_pred CCCceEEEeCc-chHHHHHHHHHHH
Q 040403 335 FPKQKIVVAGA-GSAGLGVLNAARK 358 (623)
Q Consensus 335 l~d~riv~~GA-GsAg~GIA~ll~~ 358 (623)
-.+++++|.|+ |+.|..++++...
T Consensus 144 ~~~~~vlI~g~~g~ig~~~~~~a~~ 168 (329)
T cd05288 144 KPGETVVVSAAAGAVGSVVGQIAKL 168 (329)
T ss_pred CCCCEEEEecCcchHHHHHHHHHHH
Confidence 36789999995 7766655444443
No 461
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=39.73 E-value=41 Score=31.71 Aligned_cols=80 Identities=25% Similarity=0.303 Sum_probs=40.9
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWE 415 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~ 415 (623)
.-.||-|+|||-.|..++..|..+ |. .|.-+-+ |. ......|. ..+. ...
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~a-----g~----------~v~~v~s-------rs---~~sa~~a~--~~~~---~~~ 58 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARA-----GH----------EVVGVYS-------RS---PASAERAA--AFIG---AGA 58 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHT-----TS----------EEEEESS-------CH---H-HHHHHH--C--T---T--
T ss_pred CccEEEEECCCHHHHHHHHHHHHC-----CC----------eEEEEEe-------CC---cccccccc--cccc---ccc
Confidence 457999999999999999988764 73 2322222 11 11112221 1110 223
Q ss_pred CCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHc
Q 040403 416 GASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAM 449 (623)
Q Consensus 416 ~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M 449 (623)
..++.|+++ ..|++| ++ ++.--=+++.+.+
T Consensus 59 ~~~~~~~~~--~aDlv~-ia-vpDdaI~~va~~L 88 (127)
T PF10727_consen 59 ILDLEEILR--DADLVF-IA-VPDDAIAEVAEQL 88 (127)
T ss_dssp ---TTGGGC--C-SEEE-E--S-CCHHHHHHHHH
T ss_pred ccccccccc--cCCEEE-EE-echHHHHHHHHHH
Confidence 455777777 678776 55 3455557777777
No 462
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=39.64 E-value=21 Score=39.21 Aligned_cols=50 Identities=22% Similarity=0.306 Sum_probs=30.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHh-cCCCcchhhhccC----eEEEEccCCccc
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARM-LGNNESAFDSARS----QFWVVDAKGLIT 388 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~-~Gls~~~~eeA~~----~i~lvD~~GLi~ 388 (623)
++|+|+|||-||+..|..|.++-... .|.+. +.=||+. +++-+...|...
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V-~vlEa~~r~GGr~~T~~~~g~~~ 56 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNL-ILVEKEEYLGGKIHSVEEKDFIM 56 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccE-EEEecCCCccceEEEEeeCCEEE
Confidence 47999999999999999997741110 02222 1155555 466555556543
No 463
>PRK08244 hypothetical protein; Provisional
Probab=39.64 E-value=34 Score=38.14 Aligned_cols=26 Identities=19% Similarity=0.419 Sum_probs=21.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCc
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNE 368 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~ 368 (623)
..|+|+|||.+|+..|-.|... |++.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~-----G~~v 28 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALA-----GVKT 28 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-----CCcE
Confidence 4699999999999999888764 8653
No 464
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=39.60 E-value=84 Score=33.51 Aligned_cols=117 Identities=12% Similarity=0.109 Sum_probs=62.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGA 417 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~ 417 (623)
.||.++|.|..|--|++.|... +... .+-.++.|+.. +..+.++. . .+...
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~-----~~~~------~~l~~V~~~~~----------~~~~~~~~---~-----~~~~~ 53 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLAD-----AAQP------CQLAALTRNAA----------DLPPALAG---R-----VALLD 53 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcC-----CCCc------eEEEEEecCCH----------HHHHHhhc---c-----CcccC
Confidence 6999999999999999887552 2111 23345555531 11223331 1 23456
Q ss_pred CHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEE---ecCCCCCCCCCCHHHHhcccCCcEEEecC
Q 040403 418 SLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIF---AMSNPTNNAECTPEEAFSIVGDNIIFASG 489 (623)
Q Consensus 418 ~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIF---aLSNPt~~~E~tpeda~~wT~Grai~AtG 489 (623)
+|.+.+ .-+||+++=+.++ .++.+-..+.+ +....=+|+ ||+++. =+-.-.++-+-+.+|..+.||
T Consensus 54 ~l~~ll-~~~~DlVVE~A~~-~av~e~~~~iL--~~g~dlvv~SvGALaD~~--~~~~l~~~A~~~g~~i~ipSG 122 (267)
T PRK13301 54 GLPGLL-AWRPDLVVEAAGQ-QAIAEHAEGCL--TAGLDMIICSAGALADDA--LRARLIAAAEAGGARIRVPAG 122 (267)
T ss_pred CHHHHh-hcCCCEEEECCCH-HHHHHHHHHHH--hcCCCEEEEChhHhcCHH--HHHHHHHHHHhCCCEEEEeCh
Confidence 788864 2389999988864 33333222322 112222332 244444 122333444445678888777
No 465
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=39.55 E-value=16 Score=38.05 Aligned_cols=127 Identities=17% Similarity=0.232 Sum_probs=61.3
Q ss_pred eEEEEecCceeeccCCCCCccccchhhhHHHHHHhcCCCCCCeeeEEeeccCCccccccCcCCCCcCCCCCCchhhhHhH
Q 040403 187 DMIVVTDGSRILGLGDLGVQGIGIAVGKLDLYVAAAGINPQRVLPIMIDVGTTNEKLLKDPLYLGLQEHRLDGDEYVSVI 266 (623)
Q Consensus 187 ~viVVTDG~rILGLGDlG~~GmgI~iGKl~LY~a~gGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~Rv~g~~Y~~~v 266 (623)
++.+|||.+.= +|..-+.=| ||. ++|+.+-+|. ++..++. +--.
T Consensus 1 Ki~IitDS~~d------------l~~~~~~~~----~i~---vvPl~i~~~~--~~y~D~~---------------~i~~ 44 (280)
T PF02645_consen 1 KIAIITDSTSD------------LPPELAEEY----GIY---VVPLNIIIDG--KEYRDGV---------------DISP 44 (280)
T ss_dssp -EEEEEEGGG---------------HHHHHHT----TEE---EE--EEEETT--EEEETTT---------------TSCH
T ss_pred CEEEEECCCCC------------CCHHHHHhC----CeE---EEeEEEecCC--eEEecCC---------------CCCH
Confidence 47899997743 332111111 566 7888888862 3333331 1135
Q ss_pred HHHHHHHHHh--CCceeeecccCCCchHHHHHHHHhc-------cC--CccccCcchhHHHHHHHHHHHHHHhCCCCCCC
Q 040403 267 DEFMEAIFTR--WPNVIVQFEDFQSKWAFKLLQRYRY-------KY--RMFNDDVQGTAGVAVAGLLGAVRAQGRSMIDF 335 (623)
Q Consensus 267 defv~av~~~--~P~~lIqfEDf~~~nAf~lL~ryr~-------~~--~~FNDDiQGTaaV~lAgll~A~r~~g~~~~~l 335 (623)
+||.+.+++. .|++ +.|+.-.+.+.|++ ++ .++.--.=||= ++.+...+. +
T Consensus 45 ~efy~~l~~~~~~p~T-------S~ps~~~~~~~f~~~~~~gyd~ii~i~iSs~LSgty--------~~a~~aa~~---~ 106 (280)
T PF02645_consen 45 EEFYEKLRESGEIPKT-------SQPSPGEFEEAFEKLLEEGYDEIIVITISSGLSGTY--------NSARLAAKM---L 106 (280)
T ss_dssp HHHHHHHHHTTSEEEE-------E---HHHHHHHHHHHHHTTTSEEEEEES-TTT-THH--------HHHHHHHHH---H
T ss_pred HHHHHHHHhcCCCcee-------cCCCHHHHHHHHHHHHHCCCCeEEEEeCCcchhhHH--------HHHHHHHhh---c
Confidence 7777777443 2543 33444444444443 12 23334344442 222222222 3
Q ss_pred CCceEEEeCcchHHHHHHHHHHHH--HHHhcCCCc
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKT--MARMLGNNE 368 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~--m~~~~Gls~ 368 (623)
.+.+|-++-..+++.|.+-++..+ |.++ |.|.
T Consensus 107 ~~~~i~ViDS~~~s~g~g~lv~~a~~l~~~-G~s~ 140 (280)
T PF02645_consen 107 PDIKIHVIDSKSVSAGQGLLVLEAAKLIEQ-GKSF 140 (280)
T ss_dssp TTTEEEEEE-SS-HHHHHHHHHHHHHHHHT-T--H
T ss_pred CcCEEEEEeCCCcchhhhHHHHHHHHHHHc-CCCH
Confidence 367899998888888888888775 5556 9876
No 466
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=39.49 E-value=84 Score=33.21 Aligned_cols=142 Identities=18% Similarity=0.314 Sum_probs=84.6
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLW 414 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~ 414 (623)
++ +++|+||=--|.+||+.|.. ++ +|+++|.+ +|.+.+-.+.-++.
T Consensus 42 ~k--~~lI~G~YltG~~iA~~L~~--------------~~--eV~lvDI~-----------p~lk~ll~~~i~F~----- 87 (252)
T PF06690_consen 42 FK--QALIFGAYLTGNFIASALSK--------------KC--EVTLVDIH-----------PHLKELLNENIKFM----- 87 (252)
T ss_pred cc--eEEEEEEEeehHHHHHHhcc--------------Cc--eEEEEeCc-----------HHHHHHhcCCCcee-----
Confidence 55 99999999999999887754 22 79999974 44444431100110
Q ss_pred CCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCc
Q 040403 415 EGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGSPFKD 494 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~Grai~AtGsPF~p 494 (623)
..+.+ ...+||++|-++|-||+ +++.++.. + |=+|=.=||. ++-+=...++..
T Consensus 88 --~~~~~--~~~~~DlIID~TGlGGv-~~~~Ls~~----~--p~v~IVEdP~--~~~sD~~I~~~~-------------- 140 (252)
T PF06690_consen 88 --EFRNG--LEGNPDLIIDTTGLGGV-DPDFLSKF----N--PKVFIVEDPK--GDGSDKTIYEIN-------------- 140 (252)
T ss_pred --eccCC--CCCCCCEEEECCCCCCC-CHHHHhcc----C--CCEEEEECCC--ccCcchhhhhcc--------------
Confidence 00111 13489999999999887 99999988 4 7777788888 444333333331
Q ss_pred cccCCCeeccCC--CCccccchhHH--HHHHHHcCCcccCHHHHHHHHHHHH
Q 040403 495 VDLGNGHIGHCN--QGNNMYLFPGV--GLGTLLSGSRIISDGMLQAAAECLA 542 (623)
Q Consensus 495 v~~~~G~~~~p~--Q~NN~yiFPGi--glG~~~~~a~~Itd~m~~aAA~aLA 542 (623)
...-.+. -+.+..+.=-- |+.+=.||--.+|=+.+..|+..+=
T Consensus 141 -----nt~erl~~~~~~~kg~LkT~r~~~~sKTSGTMTLTIdt~r~s~~~i~ 187 (252)
T PF06690_consen 141 -----NTEERLNAINGEKKGILKTYRSGLVSKTSGTMTLTIDTLRDSMNEIE 187 (252)
T ss_pred -----cHHHHHhhhcccceeEEEEeeccccccccceEEEEHHHHHHHHHHHH
Confidence 1111111 12222222222 4555567777777777776666554
No 467
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=39.47 E-value=40 Score=39.37 Aligned_cols=35 Identities=37% Similarity=0.532 Sum_probs=28.3
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
...+|+|+|+|.||+..|..|... |. ++.++|+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~-----G~----------~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARA-----GV----------QVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHc-----CC----------cEEEEeCCC
Confidence 579999999999999999888764 73 467777653
No 468
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=39.45 E-value=51 Score=33.99 Aligned_cols=38 Identities=8% Similarity=0.162 Sum_probs=29.1
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.+-||.|+|+|.-|-.|+.-|.+. |.-. .++++.+|++
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~-----~~~~------~~~i~~~~~~ 39 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENS-----NIIG------KENIYYHTPS 39 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhC-----CCCC------cceEEEECCC
Confidence 456899999999999999888764 5321 2569988874
No 469
>PRK06185 hypothetical protein; Provisional
Probab=39.20 E-value=35 Score=36.62 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=19.4
Q ss_pred CCceEEEeCcchHHHHHHHHHHH
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARK 358 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~ 358 (623)
.+..|+|+|||.+|+..|-.|..
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~ 27 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLAR 27 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHh
Confidence 45689999999999999877765
No 470
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=39.15 E-value=35 Score=36.91 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=19.1
Q ss_pred eEEEeCcchHHHHHHHHHHHH
Q 040403 339 KIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~ 359 (623)
+|+|+|||-||+..|..|...
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~ 22 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKH 22 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhc
Confidence 799999999999999988874
No 471
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=39.07 E-value=36 Score=37.55 Aligned_cols=31 Identities=26% Similarity=0.547 Sum_probs=24.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.++|+|||-+|.=||+.+.+ .| +++.+||++
T Consensus 3 d~lIVGaGlsG~V~A~~a~~-----~g----------k~VLIvekR 33 (374)
T COG0562 3 DYLIVGAGLSGAVIAEVAAQ-----LG----------KRVLIVEKR 33 (374)
T ss_pred cEEEECCchhHHHHHHHHHH-----cC----------CEEEEEecc
Confidence 58999999999999994433 26 788888875
No 472
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=38.94 E-value=42 Score=37.65 Aligned_cols=23 Identities=30% Similarity=0.575 Sum_probs=20.2
Q ss_pred CCceEEEeCcchHHHHHHHHHHH
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARK 358 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~ 358 (623)
...+|+|+|+|.||+..|..+..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~ 162 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILAR 162 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH
Confidence 56899999999999998888765
No 473
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=38.92 E-value=43 Score=35.54 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=19.1
Q ss_pred CceEEEeCcchHHHHHHHHHHH
Q 040403 337 KQKIVVAGAGSAGLGVLNAARK 358 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~ 358 (623)
..+|+|+|||.||+..|-+|..
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~ 24 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSR 24 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhh
Confidence 4579999999999999888876
No 474
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=38.79 E-value=1.9e+02 Score=25.74 Aligned_cols=26 Identities=31% Similarity=0.572 Sum_probs=19.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLG 365 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~G 365 (623)
.||.|+|.|... -+|+.+...|.+. |
T Consensus 1 ~~I~i~G~G~S~-~~a~~~~~~l~~~-g 26 (128)
T cd05014 1 GKVVVTGVGKSG-HIARKIAATLSST-G 26 (128)
T ss_pred CeEEEEeCcHhH-HHHHHHHHHhhcC-C
Confidence 379999999776 6888877776553 5
No 475
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=38.66 E-value=35 Score=36.37 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=18.6
Q ss_pred CceEEEeCcchHHHHHHHHHHH
Q 040403 337 KQKIVVAGAGSAGLGVLNAARK 358 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~ 358 (623)
...|+|+|||.+|+-.|-.|..
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~ 28 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALAR 28 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhc
Confidence 4579999999999999877655
No 476
>PLN02568 polyamine oxidase
Probab=38.58 E-value=24 Score=40.65 Aligned_cols=25 Identities=40% Similarity=0.527 Sum_probs=21.6
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHH
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~ 359 (623)
.+..+|+|+|||.||+..|..|...
T Consensus 3 ~~~~~v~iiGaG~aGl~aa~~L~~~ 27 (539)
T PLN02568 3 AKKPRIVIIGAGMAGLTAANKLYTS 27 (539)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhc
Confidence 3456899999999999999999874
No 477
>PRK13748 putative mercuric reductase; Provisional
Probab=38.50 E-value=35 Score=38.68 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=27.9
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.+-.++|+|||+||+..|..+.+. | .++.++|+.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~-----G----------~~v~lie~~ 130 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQ-----G----------ARVTLIERG 130 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhC-----C----------CeEEEEecC
Confidence 356799999999999998888774 7 468889875
No 478
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=38.46 E-value=2.6e+02 Score=28.99 Aligned_cols=18 Identities=39% Similarity=0.484 Sum_probs=13.3
Q ss_pred ceEEEeCc-chHHHHHHHH
Q 040403 338 QKIVVAGA-GSAGLGVLNA 355 (623)
Q Consensus 338 ~riv~~GA-GsAg~GIA~l 355 (623)
++|+|.|| |+.|....++
T Consensus 156 ~~VlI~ga~g~vG~~aiql 174 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQI 174 (345)
T ss_pred CEEEEECCCcHHHHHHHHH
Confidence 89999998 7777555433
No 479
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=38.43 E-value=39 Score=37.59 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=21.4
Q ss_pred CCCceEEEeCcchHHHH-HHHHHHHH
Q 040403 335 FPKQKIVVAGAGSAGLG-VLNAARKT 359 (623)
Q Consensus 335 l~d~riv~~GAGsAg~G-IA~ll~~~ 359 (623)
.+.++|+|+|.|-.|++ +|++|...
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~ 30 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNL 30 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhC
Confidence 45679999999999999 79988764
No 480
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=38.32 E-value=34 Score=36.76 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=18.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 040403 338 QKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~ 359 (623)
..|+|+|||.+|+..|-.|...
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~ 24 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGS 24 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcC
Confidence 3699999999999999887653
No 481
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=38.25 E-value=1.1e+02 Score=34.40 Aligned_cols=84 Identities=20% Similarity=0.322 Sum_probs=53.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHh-hhhccc--ccC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKV-NEISRQ--GLW 414 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~-~~~~~~--~~~ 414 (623)
.+||++|||-.|-.||..|++- | + .+|++.|+. . +-...++... ...+.- ...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~-----~------d---~~V~iAdRs----~------~~~~~i~~~~~~~v~~~~vD~~ 57 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN-----G------D---GEVTIADRS----K------EKCARIAELIGGKVEALQVDAA 57 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC-----C------C---ceEEEEeCC----H------HHHHHHHhhccccceeEEeccc
Confidence 4799999999999999998873 4 1 679988883 1 0011111110 000000 023
Q ss_pred CCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHc
Q 040403 415 EGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAM 449 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M 449 (623)
+...|.++|+ +.++.|-+- |+-++..++++.
T Consensus 58 d~~al~~li~--~~d~VIn~~--p~~~~~~i~ka~ 88 (389)
T COG1748 58 DVDALVALIK--DFDLVINAA--PPFVDLTILKAC 88 (389)
T ss_pred ChHHHHHHHh--cCCEEEEeC--CchhhHHHHHHH
Confidence 4557999999 669998776 667788888765
No 482
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=37.84 E-value=53 Score=32.25 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=23.8
Q ss_pred CCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAG-SAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAG-sAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
|++.+++|.||+ ..|..+|+.+++ + | -+++++++.
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~----~-G----------~~vi~~~r~ 38 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAE----A-G----------ADIVGAGRS 38 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHH----C-C----------CEEEEEcCc
Confidence 788999999984 445555555544 3 7 357777764
No 483
>PRK06545 prephenate dehydrogenase; Validated
Probab=37.66 E-value=1.3e+02 Score=32.50 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=19.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 040403 338 QKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~ 359 (623)
.+|.|+|.|..|..+|..|...
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~ 22 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA 22 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc
Confidence 3799999999999999998764
No 484
>PRK00536 speE spermidine synthase; Provisional
Probab=37.54 E-value=30 Score=36.53 Aligned_cols=83 Identities=12% Similarity=0.060 Sum_probs=47.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccC-CCCCCChhhHHhHHHhhhhcccccCCC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITE-DRENIDPDAKPFARKVNEISRQGLWEG 416 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~-~r~~l~~~~~~fA~~~~~~~~~~~~~~ 416 (623)
.||+|+|+|-.| +++-++.. . +++.|||-++-|++ .++.++..+.-|-.++-+ -.
T Consensus 74 k~VLIiGGGDGg--~~REvLkh------------~---~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~-------l~ 129 (262)
T PRK00536 74 KEVLIVDGFDLE--LAHQLFKY------------D---THVDFVQADEKILDSFISFFPHFHEVKNNKNFT-------HA 129 (262)
T ss_pred CeEEEEcCCchH--HHHHHHCc------------C---CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEE-------Ee
Confidence 799999999984 55555542 1 38999999987776 344455544433211100 01
Q ss_pred CCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHc
Q 040403 417 ASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAM 449 (623)
Q Consensus 417 ~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M 449 (623)
..+.+.- .-+=||+|-=|+ |+++-.+.+
T Consensus 130 ~~~~~~~-~~~fDVIIvDs~----~~~~fy~~~ 157 (262)
T PRK00536 130 KQLLDLD-IKKYDLIICLQE----PDIHKIDGL 157 (262)
T ss_pred ehhhhcc-CCcCCEEEEcCC----CChHHHHHH
Confidence 1122211 125788886653 667665555
No 485
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=37.48 E-value=43 Score=35.34 Aligned_cols=21 Identities=38% Similarity=0.472 Sum_probs=19.1
Q ss_pred eEEEeCcchHHHHHHHHHHHH
Q 040403 339 KIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~ 359 (623)
||.|+|||+.|..+|..|.+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~ 22 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK 22 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC
Confidence 699999999999999998774
No 486
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=37.47 E-value=4.8e+02 Score=27.69 Aligned_cols=99 Identities=22% Similarity=0.307 Sum_probs=48.5
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWE 415 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~ 415 (623)
.+++|+|.|+|+.|...+.+... .|. +.++.+|+. +.+..+++.- ....+-...
T Consensus 186 ~g~~vlI~g~g~vG~~~~~la~~-----~G~---------~~v~~~~~~-----------~~k~~~~~~~-g~~~~i~~~ 239 (365)
T cd08278 186 PGSSIAVFGAGAVGLAAVMAAKI-----AGC---------TTIIAVDIV-----------DSRLELAKEL-GATHVINPK 239 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-----cCC---------CeEEEEeCC-----------HHHHHHHHHc-CCcEEecCC
Confidence 57899999887666543332222 374 357777652 2333343221 000000011
Q ss_pred CCCHHHHHhh---cCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCC
Q 040403 416 GASLVEVVQQ---VKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNP 465 (623)
Q Consensus 416 ~~~L~e~V~~---vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNP 465 (623)
..++.+.+.. -+.|++|-+++.+. ..++.++.| .+.-.++-++++
T Consensus 240 ~~~~~~~v~~~~~~~~d~vld~~g~~~-~~~~~~~~l----~~~G~~v~~g~~ 287 (365)
T cd08278 240 EEDLVAAIREITGGGVDYALDTTGVPA-VIEQAVDAL----APRGTLALVGAP 287 (365)
T ss_pred CcCHHHHHHHHhCCCCcEEEECCCCcH-HHHHHHHHh----ccCCEEEEeCcC
Confidence 1234443332 36788988775333 336677777 333344445443
No 487
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=37.29 E-value=55 Score=28.70 Aligned_cols=30 Identities=23% Similarity=0.456 Sum_probs=23.7
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 340 IVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 340 iv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
|||+|.|..|..|++.|.+. + .++.++|++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~-----~----------~~vvvid~d 30 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG-----G----------IDVVVIDRD 30 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT-----T----------SEEEEEESS
T ss_pred eEEEcCCHHHHHHHHHHHhC-----C----------CEEEEEECC
Confidence 79999999999998888762 3 478999885
No 488
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=37.27 E-value=1.9e+02 Score=32.80 Aligned_cols=33 Identities=15% Similarity=0.102 Sum_probs=22.8
Q ss_pred hCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCc
Q 040403 328 QGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNE 368 (623)
Q Consensus 328 ~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~ 368 (623)
.... |.+.|++++|.|+=...++.++. +.|+..
T Consensus 329 ~~~~---L~GKrv~i~~g~~~~~~~~~~l~-----ELGmev 361 (466)
T TIGR01282 329 YRPR---LEGKTVMLYVGGLRPRHVIGAFE-----DLGMEV 361 (466)
T ss_pred HHHh---cCCCEEEEECCCCcHHHHHHHHH-----HCCCEE
Confidence 4455 89999999998876666666433 359743
No 489
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=37.26 E-value=42 Score=36.35 Aligned_cols=21 Identities=43% Similarity=0.634 Sum_probs=19.0
Q ss_pred eEEEeCcchHHHHHHHHHHHH
Q 040403 339 KIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~ 359 (623)
.|+|+|||-||+..|..|.++
T Consensus 3 siaIVGaGiAGl~aA~~L~~a 23 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREA 23 (331)
T ss_pred cEEEEccchHHHHHHHHHHhc
Confidence 489999999999999998886
No 490
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=37.26 E-value=31 Score=38.66 Aligned_cols=35 Identities=26% Similarity=0.487 Sum_probs=27.6
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.+||||+|+|-+|+-.|..+.... . .-+|.+||++
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~-~------------~~~itLVd~~ 37 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKL-P------------DVEITLVDRR 37 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcC-C------------CCcEEEEeCC
Confidence 479999999999999988887642 1 1468889885
No 491
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=37.17 E-value=1.4e+02 Score=31.84 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=26.6
Q ss_pred CCcEEEeccCCCCCCCHHHHHHcc-cCCCCCCEEEecCCCCC
Q 040403 427 KPDVLLGLSAVGGLFSKEVLEAMR-GSTSTRPAIFAMSNPTN 467 (623)
Q Consensus 427 kptvLIG~S~~~g~Ft~evv~~M~-a~~~erPIIFaLSNPt~ 467 (623)
+-|++||+|..|. |++++..++ ++...-|+|.=-+||.+
T Consensus 131 ~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~tI~IT~~~~s 170 (299)
T PRK05441 131 AKDVVVGIAASGR--TPYVIGALEYARERGALTIGISCNPGS 170 (299)
T ss_pred CCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 6799999996543 699999984 33344466555556663
No 492
>PRK06182 short chain dehydrogenase; Validated
Probab=37.17 E-value=1.1e+02 Score=30.71 Aligned_cols=20 Identities=25% Similarity=0.380 Sum_probs=13.7
Q ss_pred CHHHHHhhc-----CCcEEEeccCC
Q 040403 418 SLVEVVQQV-----KPDVLLGLSAV 437 (623)
Q Consensus 418 ~L~e~V~~v-----kptvLIG~S~~ 437 (623)
++.++++.+ ++|+||=..+.
T Consensus 60 ~~~~~~~~~~~~~~~id~li~~ag~ 84 (273)
T PRK06182 60 SIKAAVDTIIAEEGRIDVLVNNAGY 84 (273)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCc
Confidence 455556554 79999977764
No 493
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=37.10 E-value=59 Score=39.65 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=33.1
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENID 395 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~ 395 (623)
.+||||+|+|.||+..|+.|... +-.. .-+|.+++..--+.-+|..|+
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~-----~~~~------~~~Itvi~~e~~~~Y~r~~L~ 50 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDK-----ADAA------NFDITVFCEEPRIAYDRVHLS 50 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhh-----CCCC------CCeEEEEECCCCCcccCCcch
Confidence 36999999999999999888753 2111 247999988755443444343
No 494
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=36.98 E-value=4.4e+02 Score=28.01 Aligned_cols=20 Identities=35% Similarity=0.582 Sum_probs=14.8
Q ss_pred CCceEEEeCcchHHHHHHHH
Q 040403 336 PKQKIVVAGAGSAGLGVLNA 355 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~l 355 (623)
.+++++|.|+|+.|...+.+
T Consensus 183 ~g~~vlI~g~g~vG~~a~~~ 202 (365)
T cd05279 183 PGSTCAVFGLGGVGLSVIMG 202 (365)
T ss_pred CCCEEEEECCCHHHHHHHHH
Confidence 57899999988777655444
No 495
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=36.74 E-value=95 Score=32.64 Aligned_cols=49 Identities=33% Similarity=0.455 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEcc
Q 040403 318 VAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDA 383 (623)
Q Consensus 318 lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~ 383 (623)
.+..+.|+...+.. -..++++|.|+|+.|..++++... .|. ++++.+++
T Consensus 162 ~~ta~~al~~~~~~---~~g~~vlI~g~g~vG~~~~~lak~-----~G~---------~~v~~~~~ 210 (361)
T cd08231 162 LATVLAALDRAGPV---GAGDTVVVQGAGPLGLYAVAAAKL-----AGA---------RRVIVIDG 210 (361)
T ss_pred HHHHHHHHHhccCC---CCCCEEEEECCCHHHHHHHHHHHH-----cCC---------CeEEEEcC
Confidence 33344555555544 378999999987666555443333 274 35776665
No 496
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=36.63 E-value=1.3e+02 Score=26.36 Aligned_cols=81 Identities=21% Similarity=0.202 Sum_probs=46.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGAS 418 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~ 418 (623)
||.|+|+|..|.....-+... . +. .+=..++|++ .+..+.+++. .. .+...+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~-----~-~~------~~v~~v~d~~----------~~~~~~~~~~-~~-----~~~~~~ 53 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRS-----S-PD------FEVVAVCDPD----------PERAEAFAEK-YG-----IPVYTD 53 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHT-----T-TT------EEEEEEECSS----------HHHHHHHHHH-TT-----SEEESS
T ss_pred EEEEECCcHHHHHHHHHHHhc-----C-CC------cEEEEEEeCC----------HHHHHHHHHH-hc-----ccchhH
Confidence 899999999976665444431 1 11 1234566663 1122334321 11 345678
Q ss_pred HHHHHhhcCCcEEEeccCCCCCCCHHHHHHc
Q 040403 419 LVEVVQQVKPDVLLGLSAVGGLFSKEVLEAM 449 (623)
Q Consensus 419 L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M 449 (623)
+.|+++.-++|+++=++ .. ..-.++++..
T Consensus 54 ~~~ll~~~~~D~V~I~t-p~-~~h~~~~~~~ 82 (120)
T PF01408_consen 54 LEELLADEDVDAVIIAT-PP-SSHAEIAKKA 82 (120)
T ss_dssp HHHHHHHTTESEEEEES-SG-GGHHHHHHHH
T ss_pred HHHHHHhhcCCEEEEec-CC-cchHHHHHHH
Confidence 99999988999888443 33 4445555444
No 497
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=36.61 E-value=39 Score=40.33 Aligned_cols=106 Identities=19% Similarity=0.098 Sum_probs=56.8
Q ss_pred HHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCCC--------CCCCHHHHhcccCCcEEEecCCCCC
Q 040403 422 VVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNN--------AECTPEEAFSIVGDNIIFASGSPFK 493 (623)
Q Consensus 422 ~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~--------~E~tpeda~~wT~Grai~AtGsPF~ 493 (623)
+=+..+|+++|..+|. . +.-.-+..- ..+-+|=|.+=.-||... .+-|.+++++..- =|+..-=..
T Consensus 414 l~~~~~~~~ilasnTS-~-l~i~~ia~~-~~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~~~~---~~~~~lgk~ 487 (714)
T TIGR02437 414 VEQHVREDAILASNTS-T-ISISLLAKA-LKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATVV---AYASKMGKT 487 (714)
T ss_pred HHhhCCCCcEEEECCC-C-CCHHHHHhh-cCCcccEEEEecCCCcccCceEeecCCCCCCHHHHHHHH---HHHHHcCCE
Confidence 3355689999987753 3 333333333 244555588888999742 3334444443211 001111123
Q ss_pred ccccCCCeeccCCCCccccchhHHHHHHHHcCCcccCHHHHHHHH
Q 040403 494 DVDLGNGHIGHCNQGNNMYLFPGVGLGTLLSGSRIISDGMLQAAA 538 (623)
Q Consensus 494 pv~~~~G~~~~p~Q~NN~yiFPGiglG~~~~~a~~Itd~m~~aAA 538 (623)
||.. ...||-.=|-..+|-+--+..+...- ++.+-+-.|.
T Consensus 488 pv~v----~d~pGfi~NRl~~~~~~ea~~l~~eG-~~~~~ID~a~ 527 (714)
T TIGR02437 488 PIVV----NDCPGFFVNRVLFPYFGGFSKLLRDG-ADFVRIDKVM 527 (714)
T ss_pred EEEe----CCcccchHHHHHHHHHHHHHHHHHCC-CCHHHHHHHH
Confidence 4444 25677777887787766555444433 5666555553
No 498
>PRK08013 oxidoreductase; Provisional
Probab=36.59 E-value=44 Score=36.17 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=20.9
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNN 367 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls 367 (623)
+-.|+|+|||.+|+..|-.|... |++
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~-----G~~ 28 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGS-----GLR 28 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhC-----CCE
Confidence 35799999999999998777653 864
No 499
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=36.45 E-value=47 Score=37.05 Aligned_cols=32 Identities=22% Similarity=0.398 Sum_probs=26.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
-.|+|+|+|+||+..|..+.+. | .++.++|.+
T Consensus 4 ~DvvVIG~GpaG~~AA~~aa~~-----G----------~~V~liE~~ 35 (466)
T PRK06115 4 YDVVIIGGGPGGYNAAIRAGQL-----G----------LKVACVEGR 35 (466)
T ss_pred ccEEEECCCHHHHHHHHHHHhC-----C----------CeEEEEecC
Confidence 4699999999999998887664 7 578889964
No 500
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=36.42 E-value=47 Score=36.96 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=19.8
Q ss_pred CceEEEeCcchHHHHHHHHHHHH
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~ 359 (623)
+++|+|+|||-+|+-.|-.|..+
T Consensus 1 ~~dvvIIGaG~~GL~aa~~La~~ 23 (492)
T TIGR02733 1 ETSVVVIGAGIAGLTAAALLAKR 23 (492)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC
Confidence 46899999999999988888764
Done!