Query 040403
Match_columns 623
No_of_seqs 200 out of 1372
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 12:50:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040403.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040403hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gq2_A Malic enzyme; oxidoredu 100.0 1E-202 5E-207 1638.7 40.9 541 45-621 2-543 (555)
2 1pj3_A NAD-dependent malic enz 100.0 9E-202 3E-206 1636.7 40.0 544 43-620 2-547 (564)
3 1o0s_A NAD-ME, NAD-dependent m 100.0 2E-201 5E-206 1638.8 38.5 545 39-620 32-579 (605)
4 3nv9_A Malic enzyme; rossmann 100.0 2E-121 8E-126 984.1 37.6 396 120-610 44-449 (487)
5 2a9f_A Putative malic enzyme ( 100.0 3E-113 9E-118 912.2 24.3 368 120-581 19-391 (398)
6 1vl6_A Malate oxidoreductase; 100.0 7E-108 2E-112 869.3 27.3 360 120-577 23-388 (388)
7 2dvm_A Malic enzyme, 439AA lon 100.0 1.7E-86 5.7E-91 716.8 28.9 387 126-615 22-420 (439)
8 3h9u_A Adenosylhomocysteinase; 98.9 9.1E-09 3.1E-13 111.5 15.0 165 268-479 132-312 (436)
9 3gvp_A Adenosylhomocysteinase 98.9 1.9E-08 6.4E-13 109.0 15.4 128 302-476 181-318 (435)
10 1x13_A NAD(P) transhydrogenase 98.3 3.5E-06 1.2E-10 89.9 11.9 227 170-466 26-295 (401)
11 3n58_A Adenosylhomocysteinase; 98.0 4.6E-05 1.6E-09 83.1 14.3 129 302-477 208-346 (464)
12 3ond_A Adenosylhomocysteinase; 98.0 3.4E-05 1.2E-09 84.8 13.0 131 302-479 226-366 (488)
13 4dio_A NAD(P) transhydrogenase 97.1 0.0018 6.3E-08 69.6 10.9 114 335-472 188-322 (405)
14 3d4o_A Dipicolinate synthase s 96.8 0.013 4.3E-07 59.3 13.8 141 293-476 107-255 (293)
15 3p2y_A Alanine dehydrogenase/p 96.7 0.012 4.2E-07 62.8 13.1 108 335-466 182-305 (381)
16 1l7d_A Nicotinamide nucleotide 96.4 0.019 6.6E-07 60.4 11.7 123 320-465 148-296 (384)
17 3k92_A NAD-GDH, NAD-specific g 96.0 0.084 2.9E-06 57.2 14.5 184 257-466 126-329 (424)
18 4fcc_A Glutamate dehydrogenase 96.0 0.43 1.5E-05 52.1 19.9 184 256-466 140-354 (450)
19 3aog_A Glutamate dehydrogenase 95.9 0.18 6.2E-06 54.8 16.6 185 257-466 140-344 (440)
20 1a4i_A Methylenetetrahydrofola 95.8 0.021 7.3E-07 59.3 8.6 141 267-465 79-239 (301)
21 3r3j_A Glutamate dehydrogenase 95.8 0.3 1E-05 53.4 17.8 197 257-478 145-368 (456)
22 3tri_A Pyrroline-5-carboxylate 95.8 0.055 1.9E-06 54.4 11.3 121 337-497 3-127 (280)
23 3aoe_E Glutamate dehydrogenase 95.7 0.14 4.7E-06 55.4 14.4 180 257-466 123-323 (419)
24 3l07_A Bifunctional protein fo 95.6 0.033 1.1E-06 57.4 8.8 130 267-447 78-224 (285)
25 3p2o_A Bifunctional protein fo 95.6 0.034 1.2E-06 57.3 8.9 130 267-447 77-223 (285)
26 4e12_A Diketoreductase; oxidor 95.5 0.069 2.4E-06 53.4 10.7 32 338-384 5-36 (283)
27 4a26_A Putative C-1-tetrahydro 95.5 0.062 2.1E-06 55.8 10.5 130 267-447 81-230 (300)
28 2yfq_A Padgh, NAD-GDH, NAD-spe 95.4 0.25 8.6E-06 53.4 15.5 185 257-466 116-326 (421)
29 4a5o_A Bifunctional protein fo 95.4 0.038 1.3E-06 57.1 8.7 130 267-447 79-224 (286)
30 1v8b_A Adenosylhomocysteinase; 95.3 0.17 6E-06 55.5 13.9 124 308-478 234-357 (479)
31 1b0a_A Protein (fold bifunctio 95.3 0.03 1E-06 57.8 7.3 130 267-447 77-222 (288)
32 2rir_A Dipicolinate synthase, 95.1 0.11 3.7E-06 52.6 10.8 110 325-476 148-257 (300)
33 1gpj_A Glutamyl-tRNA reductase 95.0 0.37 1.3E-05 51.0 15.0 138 290-466 128-269 (404)
34 3d64_A Adenosylhomocysteinase; 94.9 0.15 5E-06 56.2 11.9 110 312-466 258-367 (494)
35 3jyo_A Quinate/shikimate dehyd 94.7 0.11 3.7E-06 52.9 9.7 91 318-437 111-204 (283)
36 1pjc_A Protein (L-alanine dehy 94.7 0.18 6.1E-06 52.6 11.3 98 335-465 165-269 (361)
37 3ce6_A Adenosylhomocysteinase; 94.4 0.51 1.8E-05 51.9 14.6 109 326-478 266-374 (494)
38 2c2x_A Methylenetetrahydrofola 94.3 0.21 7.3E-06 51.4 10.6 143 267-465 76-234 (281)
39 2tmg_A Protein (glutamate dehy 93.9 2.1 7E-05 46.3 17.9 184 258-466 115-319 (415)
40 2o4c_A Erythronate-4-phosphate 93.8 0.9 3.1E-05 48.4 14.8 141 277-464 56-208 (380)
41 2dpo_A L-gulonate 3-dehydrogen 93.8 0.67 2.3E-05 47.8 13.4 132 337-497 6-152 (319)
42 3ngx_A Bifunctional protein fo 93.7 0.13 4.5E-06 52.8 7.8 127 267-446 70-212 (276)
43 1c1d_A L-phenylalanine dehydro 93.7 0.36 1.2E-05 51.1 11.2 165 258-467 91-266 (355)
44 2bma_A Glutamate dehydrogenase 93.6 1.4 4.9E-05 48.3 16.2 186 258-466 159-372 (470)
45 3gt0_A Pyrroline-5-carboxylate 93.6 0.41 1.4E-05 46.6 10.8 123 338-497 3-126 (247)
46 1v9l_A Glutamate dehydrogenase 93.4 0.43 1.5E-05 51.6 11.4 182 258-466 116-325 (421)
47 1hyh_A L-hicdh, L-2-hydroxyiso 93.3 0.26 8.9E-06 49.9 9.2 103 338-467 2-126 (309)
48 1edz_A 5,10-methylenetetrahydr 93.1 0.087 3E-06 55.1 5.4 102 317-447 151-266 (320)
49 2ekl_A D-3-phosphoglycerate de 93.0 2.1 7.2E-05 43.9 15.5 145 276-464 65-233 (313)
50 1bgv_A Glutamate dehydrogenase 92.9 4.1 0.00014 44.4 18.2 187 258-466 136-350 (449)
51 3ado_A Lambda-crystallin; L-gu 92.7 1.2 4.2E-05 46.2 13.3 196 336-584 5-216 (319)
52 2dbq_A Glyoxylate reductase; D 92.4 3.3 0.00011 42.7 16.1 145 276-464 64-241 (334)
53 1wwk_A Phosphoglycerate dehydr 92.4 2.1 7.1E-05 43.8 14.4 145 276-464 63-233 (307)
54 3oj0_A Glutr, glutamyl-tRNA re 92.4 0.13 4.5E-06 45.8 4.9 71 337-438 21-91 (144)
55 3oet_A Erythronate-4-phosphate 92.3 1.1 3.7E-05 47.9 12.5 119 302-466 84-213 (381)
56 2vhw_A Alanine dehydrogenase; 92.3 0.38 1.3E-05 50.5 9.0 98 335-464 166-269 (377)
57 3fbt_A Chorismate mutase and s 92.2 0.21 7.1E-06 51.1 6.7 49 319-384 107-155 (282)
58 3tnl_A Shikimate dehydrogenase 92.1 0.24 8.4E-06 51.3 7.2 50 318-384 138-187 (315)
59 3t4e_A Quinate/shikimate dehyd 92.1 0.24 8.2E-06 51.3 7.0 49 319-384 133-181 (312)
60 3o8q_A Shikimate 5-dehydrogena 92.1 0.22 7.7E-06 50.6 6.7 99 266-384 50-159 (281)
61 3fef_A Putative glucosidase LP 92.1 0.12 4E-06 56.4 4.9 108 336-466 4-149 (450)
62 3mw9_A GDH 1, glutamate dehydr 91.9 2.4 8.3E-05 46.8 15.0 187 256-466 135-352 (501)
63 2gcg_A Glyoxylate reductase/hy 91.9 2.1 7.2E-05 44.0 13.8 146 278-464 75-247 (330)
64 3tum_A Shikimate dehydrogenase 91.8 0.28 9.7E-06 49.7 7.1 47 320-383 111-157 (269)
65 2eez_A Alanine dehydrogenase; 91.7 0.44 1.5E-05 49.7 8.7 98 335-465 164-268 (369)
66 3pwz_A Shikimate dehydrogenase 91.7 0.24 8.2E-06 50.1 6.4 99 266-384 44-153 (272)
67 1pzg_A LDH, lactate dehydrogen 91.6 0.58 2E-05 48.4 9.3 107 338-467 10-136 (331)
68 1lu9_A Methylene tetrahydromet 91.5 1.1 3.6E-05 44.8 10.9 84 281-384 61-152 (287)
69 2egg_A AROE, shikimate 5-dehyd 91.5 0.24 8.3E-06 50.4 6.2 88 319-437 125-214 (297)
70 1p77_A Shikimate 5-dehydrogena 91.4 0.23 8E-06 49.6 5.9 49 318-384 103-151 (272)
71 3don_A Shikimate dehydrogenase 91.3 0.16 5.5E-06 51.7 4.7 49 319-384 102-150 (277)
72 3u62_A Shikimate dehydrogenase 91.0 0.18 6.3E-06 50.4 4.7 123 266-436 42-175 (253)
73 2izz_A Pyrroline-5-carboxylate 91.0 0.89 3E-05 46.3 9.9 103 335-467 20-122 (322)
74 1nyt_A Shikimate 5-dehydrogena 90.8 0.4 1.4E-05 47.8 6.9 49 318-384 103-151 (271)
75 3h8v_A Ubiquitin-like modifier 90.7 0.15 5.3E-06 52.4 3.9 36 335-384 34-69 (292)
76 4huj_A Uncharacterized protein 90.5 0.65 2.2E-05 44.6 7.9 93 338-467 24-117 (220)
77 2ewd_A Lactate dehydrogenase,; 90.4 0.26 8.9E-06 50.2 5.3 106 338-467 5-125 (317)
78 3u95_A Glycoside hydrolase, fa 90.4 0.16 5.5E-06 55.5 3.9 44 443-490 140-183 (477)
79 2v6b_A L-LDH, L-lactate dehydr 90.4 0.34 1.1E-05 49.4 6.1 121 339-490 2-140 (304)
80 2j6i_A Formate dehydrogenase; 90.3 1.7 6E-05 45.6 11.6 149 277-465 82-259 (364)
81 1leh_A Leucine dehydrogenase; 90.2 0.74 2.5E-05 48.7 8.7 159 263-466 93-264 (364)
82 3dtt_A NADP oxidoreductase; st 90.2 0.32 1.1E-05 47.6 5.4 106 335-466 17-127 (245)
83 3k96_A Glycerol-3-phosphate de 90.0 1.1 3.6E-05 46.9 9.6 102 337-467 29-137 (356)
84 1txg_A Glycerol-3-phosphate de 89.8 0.97 3.3E-05 45.2 8.8 98 339-466 2-107 (335)
85 4e21_A 6-phosphogluconate dehy 89.7 1.1 3.7E-05 47.0 9.4 98 335-466 20-118 (358)
86 2i6t_A Ubiquitin-conjugating e 89.4 0.97 3.3E-05 46.3 8.6 121 338-489 15-150 (303)
87 2zyd_A 6-phosphogluconate dehy 89.4 0.93 3.2E-05 49.3 8.9 103 335-466 13-116 (480)
88 1z82_A Glycerol-3-phosphate de 89.4 0.83 2.8E-05 46.5 8.0 99 337-468 14-116 (335)
89 2hk9_A Shikimate dehydrogenase 89.0 0.62 2.1E-05 46.5 6.7 82 319-436 114-195 (275)
90 1mld_A Malate dehydrogenase; o 88.9 1.4 4.8E-05 45.2 9.4 101 339-466 2-120 (314)
91 1s6y_A 6-phospho-beta-glucosid 88.9 0.067 2.3E-06 58.1 -0.5 132 338-489 8-175 (450)
92 3jtm_A Formate dehydrogenase, 88.8 3.2 0.00011 43.5 12.2 167 277-487 84-278 (351)
93 1up7_A 6-phospho-beta-glucosid 88.8 1.2 4.1E-05 47.8 9.1 127 338-489 3-164 (417)
94 2d5c_A AROE, shikimate 5-dehyd 88.7 0.56 1.9E-05 46.2 6.0 79 319-436 102-180 (263)
95 2hjr_A Malate dehydrogenase; m 88.5 0.73 2.5E-05 47.6 7.0 129 338-493 15-160 (328)
96 2d0i_A Dehydrogenase; structur 88.5 3.1 0.00011 43.0 11.7 89 335-464 144-236 (333)
97 1a5z_A L-lactate dehydrogenase 88.3 1.3 4.3E-05 45.3 8.6 104 339-467 2-120 (319)
98 3d1l_A Putative NADP oxidoredu 88.3 0.7 2.4E-05 45.1 6.4 98 335-467 8-106 (266)
99 4g2n_A D-isomer specific 2-hyd 88.2 4.4 0.00015 42.5 12.7 191 302-546 117-336 (345)
100 3k5p_A D-3-phosphoglycerate de 88.1 9.3 0.00032 41.1 15.5 215 277-545 78-321 (416)
101 1u8x_X Maltose-6'-phosphate gl 88.1 0.095 3.2E-06 57.3 -0.0 132 337-489 28-194 (472)
102 1sc6_A PGDH, D-3-phosphoglycer 88.0 6.8 0.00023 41.8 14.3 142 277-464 67-234 (404)
103 4hy3_A Phosphoglycerate oxidor 88.0 3.4 0.00012 43.7 11.8 132 312-485 133-286 (365)
104 2d4a_B Malate dehydrogenase; a 88.0 1.3 4.3E-05 45.4 8.3 104 339-466 1-119 (308)
105 2h78_A Hibadh, 3-hydroxyisobut 87.7 1.1 3.7E-05 44.6 7.4 93 338-465 4-99 (302)
106 3ba1_A HPPR, hydroxyphenylpyru 87.6 3.2 0.00011 43.1 11.2 119 302-466 110-254 (333)
107 1t2d_A LDH-P, L-lactate dehydr 87.6 0.64 2.2E-05 47.9 5.9 126 338-490 5-152 (322)
108 1o6z_A MDH, malate dehydrogena 87.3 0.37 1.3E-05 49.1 3.8 114 339-479 2-132 (303)
109 1ldn_A L-lactate dehydrogenase 87.3 1 3.4E-05 46.2 7.0 106 337-466 6-126 (316)
110 1obb_A Maltase, alpha-glucosid 87.2 0.24 8.3E-06 54.3 2.5 130 337-489 3-174 (480)
111 2rcy_A Pyrroline carboxylate r 86.6 3 0.0001 40.2 9.8 92 337-467 4-95 (262)
112 4fgw_A Glycerol-3-phosphate de 86.2 0.61 2.1E-05 49.9 4.9 107 338-463 35-151 (391)
113 3vku_A L-LDH, L-lactate dehydr 86.0 0.75 2.6E-05 47.9 5.4 115 337-479 9-138 (326)
114 1nvt_A Shikimate 5'-dehydrogen 85.9 0.75 2.6E-05 46.1 5.1 49 317-384 111-159 (287)
115 3i83_A 2-dehydropantoate 2-red 85.8 0.72 2.5E-05 46.7 5.1 99 338-467 3-109 (320)
116 2p4q_A 6-phosphogluconate dehy 85.8 1.8 6.1E-05 47.4 8.4 101 338-466 11-112 (497)
117 3m6i_A L-arabinitol 4-dehydrog 85.7 5.1 0.00017 40.9 11.3 110 310-449 157-273 (363)
118 2nac_A NAD-dependent formate d 85.6 4.6 0.00016 43.1 11.3 122 302-464 136-284 (393)
119 1x0v_A GPD-C, GPDH-C, glycerol 85.5 3.7 0.00013 41.5 10.2 114 337-467 8-128 (354)
120 3rui_A Ubiquitin-like modifier 85.3 0.54 1.8E-05 49.5 3.9 37 335-385 32-68 (340)
121 1yj8_A Glycerol-3-phosphate de 85.2 1.7 5.8E-05 44.9 7.6 113 338-467 22-145 (375)
122 1lld_A L-lactate dehydrogenase 85.2 1.7 5.7E-05 43.6 7.3 107 337-467 7-128 (319)
123 2w2k_A D-mandelate dehydrogena 85.1 7.4 0.00025 40.4 12.4 93 335-465 161-258 (348)
124 1f0y_A HCDH, L-3-hydroxyacyl-C 84.9 2.8 9.4E-05 41.9 8.8 32 338-384 16-47 (302)
125 2iz1_A 6-phosphogluconate dehy 84.7 2.4 8.1E-05 45.8 8.7 101 337-466 5-106 (474)
126 4dgs_A Dehydrogenase; structur 84.7 8.1 0.00028 40.3 12.4 120 313-478 130-273 (340)
127 1b8p_A Protein (malate dehydro 84.5 0.53 1.8E-05 48.4 3.4 114 337-466 5-136 (329)
128 3kkj_A Amine oxidase, flavin-c 84.5 0.86 2.9E-05 40.6 4.3 25 339-368 4-28 (336)
129 1ez4_A Lactate dehydrogenase; 84.4 0.93 3.2E-05 46.7 5.1 115 337-479 5-134 (318)
130 2pgd_A 6-phosphogluconate dehy 84.3 1.9 6.4E-05 46.7 7.7 101 338-466 3-104 (482)
131 3pdu_A 3-hydroxyisobutyrate de 84.3 1.9 6.5E-05 42.7 7.2 32 338-384 2-33 (287)
132 1x7d_A Ornithine cyclodeaminas 84.3 4.3 0.00015 42.4 10.2 120 319-474 116-238 (350)
133 3hg7_A D-isomer specific 2-hyd 84.2 4.3 0.00015 42.2 10.0 179 313-546 103-302 (324)
134 3ic5_A Putative saccharopine d 84.2 1.3 4.4E-05 36.8 5.1 85 336-449 4-89 (118)
135 2zqz_A L-LDH, L-lactate dehydr 84.1 0.71 2.4E-05 47.8 4.1 115 337-479 9-138 (326)
136 1smk_A Malate dehydrogenase, g 84.1 1.3 4.5E-05 45.5 6.1 105 337-466 8-128 (326)
137 2cuk_A Glycerate dehydrogenase 84.0 8.2 0.00028 39.5 12.0 116 302-465 88-231 (311)
138 1guz_A Malate dehydrogenase; o 83.9 2.8 9.5E-05 42.6 8.3 105 339-466 2-121 (310)
139 3qsg_A NAD-binding phosphogluc 83.9 4.6 0.00016 40.8 10.0 34 337-384 24-57 (312)
140 2g76_A 3-PGDH, D-3-phosphoglyc 83.9 8.2 0.00028 40.1 12.0 122 301-465 111-257 (335)
141 2i99_A MU-crystallin homolog; 83.7 18 0.00062 36.6 14.4 105 335-478 133-241 (312)
142 4gsl_A Ubiquitin-like modifier 83.5 0.56 1.9E-05 53.0 3.2 37 335-385 324-360 (615)
143 1ur5_A Malate dehydrogenase; o 83.5 3.3 0.00011 42.2 8.7 105 338-466 3-122 (309)
144 3doj_A AT3G25530, dehydrogenas 83.5 2.4 8.1E-05 42.8 7.6 35 335-384 19-53 (310)
145 4e5n_A Thermostable phosphite 83.4 4.4 0.00015 42.0 9.7 123 302-466 90-239 (330)
146 4b4u_A Bifunctional protein fo 83.4 7.2 0.00025 40.5 11.2 131 267-448 97-243 (303)
147 1pgj_A 6PGDH, 6-PGDH, 6-phosph 83.4 2.1 7.1E-05 46.4 7.5 102 339-466 3-106 (478)
148 3lk7_A UDP-N-acetylmuramoylala 83.3 2.3 7.8E-05 45.4 7.8 120 335-505 7-127 (451)
149 3b1f_A Putative prephenate deh 83.2 1.4 4.9E-05 43.4 5.7 96 337-465 6-103 (290)
150 1bg6_A N-(1-D-carboxylethyl)-L 83.2 4.2 0.00014 40.9 9.3 98 338-464 5-110 (359)
151 1jw9_B Molybdopterin biosynthe 83.1 0.79 2.7E-05 45.4 3.8 37 335-385 29-65 (249)
152 3vrd_B FCCB subunit, flavocyto 82.9 1.4 4.6E-05 45.3 5.6 35 337-384 2-36 (401)
153 1gtm_A Glutamate dehydrogenase 82.8 14 0.00048 39.7 13.6 114 258-388 115-250 (419)
154 1npy_A Hypothetical shikimate 82.7 1.6 5.5E-05 44.0 5.9 48 319-384 105-152 (271)
155 3pef_A 6-phosphogluconate dehy 82.3 1.8 6.1E-05 42.9 6.1 32 338-384 2-33 (287)
156 2pi1_A D-lactate dehydrogenase 82.0 9.5 0.00032 39.6 11.6 162 277-485 62-250 (334)
157 1zud_1 Adenylyltransferase THI 81.9 0.81 2.8E-05 45.4 3.4 36 335-384 26-61 (251)
158 3gg9_A D-3-phosphoglycerate de 81.8 11 0.00038 39.4 12.2 195 301-546 97-325 (352)
159 2qrj_A Saccharopine dehydrogen 81.8 5.6 0.00019 42.7 10.0 71 337-449 214-289 (394)
160 1qp8_A Formate dehydrogenase; 81.5 15 0.00051 37.5 12.7 120 301-464 71-211 (303)
161 4gwg_A 6-phosphogluconate dehy 81.3 5 0.00017 43.9 9.6 102 337-466 4-106 (484)
162 3gvi_A Malate dehydrogenase; N 81.3 0.85 2.9E-05 47.4 3.4 108 335-466 5-127 (324)
163 1y6j_A L-lactate dehydrogenase 80.9 3 0.0001 42.8 7.3 115 338-479 8-136 (318)
164 3k6j_A Protein F01G10.3, confi 80.8 1.4 4.7E-05 48.1 5.0 32 338-384 55-86 (460)
165 2g1u_A Hypothetical protein TM 80.5 2 6.7E-05 38.6 5.1 35 335-384 17-51 (155)
166 2uyy_A N-PAC protein; long-cha 80.5 3 0.0001 41.7 7.0 32 338-384 31-62 (316)
167 1xdw_A NAD+-dependent (R)-2-hy 80.5 9.9 0.00034 39.2 11.1 121 302-464 92-235 (331)
168 3evt_A Phosphoglycerate dehydr 80.4 4.4 0.00015 41.9 8.4 216 275-545 57-300 (324)
169 3c24_A Putative oxidoreductase 80.3 3.1 0.00011 41.1 7.0 92 338-466 12-104 (286)
170 3h5n_A MCCB protein; ubiquitin 80.2 1.3 4.4E-05 46.3 4.4 36 335-384 116-151 (353)
171 2x5o_A UDP-N-acetylmuramoylala 80.2 4.6 0.00016 42.8 8.7 115 334-502 2-116 (439)
172 2yq5_A D-isomer specific 2-hyd 80.2 12 0.00041 39.1 11.7 123 302-466 93-239 (343)
173 1j4a_A D-LDH, D-lactate dehydr 80.1 13 0.00046 38.2 12.0 125 301-466 92-238 (333)
174 4dll_A 2-hydroxy-3-oxopropiona 80.1 1.9 6.7E-05 43.7 5.6 35 335-384 29-63 (320)
175 1oju_A MDH, malate dehydrogena 80.1 0.56 1.9E-05 48.0 1.5 115 339-479 2-131 (294)
176 1gdh_A D-glycerate dehydrogena 79.8 11 0.00037 38.6 11.1 121 302-464 90-239 (320)
177 2f1k_A Prephenate dehydrogenas 79.7 2.2 7.7E-05 41.7 5.7 31 339-384 2-32 (279)
178 3ghy_A Ketopantoate reductase 79.6 2.6 9E-05 42.9 6.4 99 337-466 3-107 (335)
179 3mog_A Probable 3-hydroxybutyr 79.5 5.5 0.00019 43.4 9.2 33 337-384 5-37 (483)
180 1yb4_A Tartronic semialdehyde 79.2 3.2 0.00011 40.8 6.6 22 338-359 4-25 (295)
181 3hwr_A 2-dehydropantoate 2-red 79.0 3.8 0.00013 41.5 7.3 102 335-467 17-124 (318)
182 1mx3_A CTBP1, C-terminal bindi 79.0 13 0.00046 38.7 11.6 217 276-545 82-333 (347)
183 3d0o_A L-LDH 1, L-lactate dehy 78.7 2.8 9.4E-05 43.0 6.2 118 336-479 5-136 (317)
184 3gvx_A Glycerate dehydrogenase 78.7 17 0.00057 37.1 11.9 158 335-546 120-281 (290)
185 1y8q_A Ubiquitin-like 1 activa 78.4 1.6 5.5E-05 45.5 4.4 107 335-461 34-156 (346)
186 3l6d_A Putative oxidoreductase 78.4 2.1 7E-05 43.2 5.1 35 335-384 7-41 (306)
187 3vh1_A Ubiquitin-like modifier 78.3 1.1 3.9E-05 50.4 3.4 36 335-384 325-360 (598)
188 3fpc_A NADP-dependent alcohol 78.2 3.6 0.00012 41.8 6.9 102 317-449 151-256 (352)
189 1omo_A Alanine dehydrogenase; 78.2 20 0.00068 36.6 12.5 103 336-474 124-229 (322)
190 3cky_A 2-hydroxymethyl glutara 78.1 2.1 7.1E-05 42.3 4.9 32 338-384 5-36 (301)
191 1vpd_A Tartronate semialdehyde 77.9 2 6.9E-05 42.3 4.8 32 338-384 6-37 (299)
192 3nep_X Malate dehydrogenase; h 77.9 2.7 9.3E-05 43.4 5.9 115 339-479 2-131 (314)
193 2xxj_A L-LDH, L-lactate dehydr 77.6 1.5 5E-05 45.0 3.7 115 338-479 1-129 (310)
194 3ggo_A Prephenate dehydrogenas 77.5 4.6 0.00016 41.2 7.4 94 338-463 34-128 (314)
195 2ahr_A Putative pyrroline carb 77.1 6.6 0.00023 37.9 8.1 90 338-466 4-93 (259)
196 1jay_A Coenzyme F420H2:NADP+ o 76.8 1.7 5.7E-05 40.7 3.6 98 339-467 2-101 (212)
197 3fys_A Protein DEGV; fatty aci 76.7 1.1 3.6E-05 46.6 2.4 152 161-368 16-175 (315)
198 3tl2_A Malate dehydrogenase; c 76.7 0.79 2.7E-05 47.4 1.4 117 336-479 7-140 (315)
199 1hye_A L-lactate/malate dehydr 76.4 0.76 2.6E-05 46.9 1.2 114 339-479 2-135 (313)
200 3g0o_A 3-hydroxyisobutyrate de 76.2 2.1 7.2E-05 42.9 4.4 33 337-384 7-39 (303)
201 3hdj_A Probable ornithine cycl 76.2 35 0.0012 34.9 13.6 106 336-477 120-228 (313)
202 3uko_A Alcohol dehydrogenase c 76.1 16 0.00056 37.4 11.2 87 336-449 193-284 (378)
203 3pp8_A Glyoxylate/hydroxypyruv 76.0 10 0.00036 39.0 9.6 217 278-545 58-300 (315)
204 3qha_A Putative oxidoreductase 76.0 3.4 0.00012 41.3 5.8 33 337-384 15-47 (296)
205 4a2c_A Galactitol-1-phosphate 75.4 10 0.00034 38.1 9.2 64 311-403 139-202 (346)
206 2g5c_A Prephenate dehydrogenas 75.1 4.5 0.00015 39.6 6.3 98 338-466 2-99 (281)
207 2hmt_A YUAA protein; RCK, KTN, 74.5 2.4 8.1E-05 36.4 3.7 35 335-384 4-38 (144)
208 3ip1_A Alcohol dehydrogenase, 74.2 12 0.0004 39.0 9.5 76 336-437 213-292 (404)
209 4ej6_A Putative zinc-binding d 74.0 8.5 0.00029 39.6 8.4 110 309-449 159-274 (370)
210 3kb6_A D-lactate dehydrogenase 73.9 19 0.00064 37.3 11.0 119 302-464 87-231 (334)
211 2x0j_A Malate dehydrogenase; o 73.8 7.7 0.00026 39.7 7.9 116 339-479 2-131 (294)
212 1hyu_A AHPF, alkyl hydroperoxi 73.8 3.7 0.00013 44.5 5.8 92 265-358 134-233 (521)
213 3ldh_A Lactate dehydrogenase; 73.7 1.9 6.4E-05 45.1 3.3 118 336-480 20-152 (330)
214 1dxy_A D-2-hydroxyisocaproate 73.6 20 0.0007 36.9 11.1 120 302-466 91-236 (333)
215 3phh_A Shikimate dehydrogenase 73.2 2.8 9.7E-05 42.5 4.5 33 337-384 118-150 (269)
216 3d1c_A Flavin-containing putat 72.9 3 0.0001 41.6 4.5 35 337-385 4-38 (369)
217 3pqe_A L-LDH, L-lactate dehydr 72.5 2.7 9.2E-05 43.6 4.2 116 337-479 5-135 (326)
218 1pl8_A Human sorbitol dehydrog 72.2 7.2 0.00024 39.8 7.3 49 317-383 156-204 (356)
219 4aj2_A L-lactate dehydrogenase 71.8 8.8 0.0003 39.9 7.9 119 335-480 17-150 (331)
220 3fi9_A Malate dehydrogenase; s 71.6 2.8 9.5E-05 43.9 4.1 118 335-479 6-139 (343)
221 1lss_A TRK system potassium up 71.2 4.5 0.00016 34.5 4.7 33 337-384 4-36 (140)
222 1tt5_B Ubiquitin-activating en 71.2 2.2 7.4E-05 46.1 3.2 36 335-384 38-73 (434)
223 4ina_A Saccharopine dehydrogen 71.0 6.8 0.00023 41.3 6.9 88 338-449 2-96 (405)
224 3fbs_A Oxidoreductase; structu 71.0 3.6 0.00012 39.3 4.5 32 338-384 3-34 (297)
225 1hdo_A Biliverdin IX beta redu 70.7 4.4 0.00015 36.7 4.8 74 337-437 3-77 (206)
226 4egb_A DTDP-glucose 4,6-dehydr 70.2 7.6 0.00026 38.5 6.7 111 335-463 22-149 (346)
227 3llv_A Exopolyphosphatase-rela 70.0 4.2 0.00014 35.5 4.3 35 335-384 4-38 (141)
228 2cvz_A Dehydrogenase, 3-hydrox 69.6 5.6 0.00019 38.8 5.5 19 339-357 3-21 (289)
229 3c7a_A Octopine dehydrogenase; 69.5 11 0.00038 39.1 8.0 21 338-358 3-23 (404)
230 1y7t_A Malate dehydrogenase; N 69.4 0.99 3.4E-05 46.0 0.1 113 338-466 5-133 (327)
231 3f8d_A Thioredoxin reductase ( 69.4 4.1 0.00014 39.4 4.5 33 337-384 15-47 (323)
232 2gf2_A Hibadh, 3-hydroxyisobut 69.3 7.6 0.00026 38.1 6.5 31 339-384 2-32 (296)
233 4a9w_A Monooxygenase; baeyer-v 68.9 3.4 0.00011 40.5 3.8 34 337-385 3-36 (357)
234 1pqw_A Polyketide synthase; ro 68.9 14 0.00047 34.0 7.8 49 317-383 22-71 (198)
235 1evy_A Glycerol-3-phosphate de 68.8 1.9 6.6E-05 44.1 2.1 31 339-384 17-47 (366)
236 1np3_A Ketol-acid reductoisome 68.8 7.3 0.00025 40.0 6.4 90 335-460 14-104 (338)
237 3p7m_A Malate dehydrogenase; p 68.8 4 0.00014 42.2 4.5 118 335-479 3-135 (321)
238 4hb9_A Similarities with proba 68.6 4.4 0.00015 40.6 4.7 25 338-367 2-26 (412)
239 3lzw_A Ferredoxin--NADP reduct 68.5 4.4 0.00015 39.4 4.5 33 337-384 7-39 (332)
240 3uog_A Alcohol dehydrogenase; 68.5 25 0.00084 35.9 10.3 85 336-449 189-277 (363)
241 1y8q_B Anthracycline-, ubiquit 68.3 3.1 0.0001 47.3 3.8 36 335-384 15-50 (640)
242 2zbw_A Thioredoxin reductase; 68.3 4.4 0.00015 39.9 4.5 34 337-385 5-38 (335)
243 3fg2_P Putative rubredoxin red 68.1 4.4 0.00015 41.8 4.7 35 338-385 2-36 (404)
244 2jae_A L-amino acid oxidase; o 68.0 4.7 0.00016 42.4 4.9 25 335-359 9-33 (489)
245 2ywl_A Thioredoxin reductase r 67.7 5.1 0.00017 36.1 4.5 32 338-384 2-33 (180)
246 3hyw_A Sulfide-quinone reducta 67.6 5.9 0.0002 41.5 5.5 34 338-384 3-36 (430)
247 1ygy_A PGDH, D-3-phosphoglycer 67.5 26 0.00089 38.4 10.9 119 302-463 89-232 (529)
248 4eez_A Alcohol dehydrogenase 1 67.2 14 0.00047 37.1 8.0 48 318-383 149-196 (348)
249 2z2v_A Hypothetical protein PH 67.0 6.4 0.00022 41.2 5.6 123 336-495 15-137 (365)
250 3dme_A Conserved exported prot 66.8 5.3 0.00018 39.4 4.8 33 337-384 4-36 (369)
251 3h8l_A NADH oxidase; membrane 66.7 4.8 0.00016 41.4 4.6 36 338-385 2-37 (409)
252 3itj_A Thioredoxin reductase 1 66.1 4 0.00014 39.9 3.7 34 336-384 21-54 (338)
253 3lxd_A FAD-dependent pyridine 65.6 5.2 0.00018 41.4 4.6 38 336-386 8-45 (415)
254 3c85_A Putative glutathione-re 65.6 6.6 0.00023 35.8 4.9 36 335-384 37-72 (183)
255 3alj_A 2-methyl-3-hydroxypyrid 65.4 5.9 0.0002 40.2 4.9 36 335-385 9-44 (379)
256 1ryi_A Glycine oxidase; flavop 65.1 5.4 0.00019 40.0 4.5 36 336-386 16-51 (382)
257 2q7v_A Thioredoxin reductase; 65.0 5.6 0.00019 39.1 4.5 33 337-384 8-40 (325)
258 2gf3_A MSOX, monomeric sarcosi 64.6 5.8 0.0002 39.8 4.6 36 337-387 3-38 (389)
259 3dfz_A SIRC, precorrin-2 dehyd 64.5 5.2 0.00018 39.5 4.2 36 334-384 28-63 (223)
260 4eye_A Probable oxidoreductase 64.5 24 0.00083 35.7 9.3 100 317-449 143-247 (342)
261 1y56_B Sarcosine oxidase; dehy 64.4 5.7 0.0002 39.9 4.6 34 337-385 5-38 (382)
262 2xve_A Flavin-containing monoo 64.4 6.4 0.00022 41.8 5.2 38 338-384 3-40 (464)
263 2pv7_A T-protein [includes: ch 64.2 14 0.00048 36.9 7.4 32 338-384 22-54 (298)
264 3r9u_A Thioredoxin reductase; 64.0 6 0.00021 38.1 4.5 23 337-359 4-26 (315)
265 3cty_A Thioredoxin reductase; 64.0 5.7 0.0002 38.9 4.4 33 337-384 16-48 (319)
266 1id1_A Putative potassium chan 64.0 7.3 0.00025 34.7 4.7 34 336-384 2-35 (153)
267 3k7m_X 6-hydroxy-L-nicotine ox 63.6 6.4 0.00022 40.3 4.8 22 338-359 2-23 (431)
268 3ab1_A Ferredoxin--NADP reduct 63.6 6.5 0.00022 39.3 4.8 35 336-385 13-47 (360)
269 1kol_A Formaldehyde dehydrogen 63.6 18 0.0006 37.4 8.2 88 318-436 171-263 (398)
270 1e3j_A NADP(H)-dependent ketos 63.4 12 0.00041 38.0 6.8 37 317-357 153-189 (352)
271 2q0l_A TRXR, thioredoxin reduc 63.4 6.3 0.00021 38.3 4.5 33 338-384 2-34 (311)
272 2dq4_A L-threonine 3-dehydroge 63.4 20 0.00069 36.1 8.4 85 336-449 164-252 (343)
273 3ef6_A Toluene 1,2-dioxygenase 63.2 6.8 0.00023 40.6 5.0 36 338-386 3-38 (410)
274 2gv8_A Monooxygenase; FMO, FAD 63.1 6.4 0.00022 41.2 4.8 36 336-384 5-40 (447)
275 1c0p_A D-amino acid oxidase; a 63.1 7.7 0.00026 38.9 5.2 34 337-385 6-39 (363)
276 2xdo_A TETX2 protein; tetracyc 63.1 6.6 0.00022 40.2 4.8 36 335-385 24-59 (398)
277 1zk7_A HGII, reductase, mercur 63.0 6.9 0.00023 41.2 5.0 33 337-384 4-36 (467)
278 3fwz_A Inner membrane protein 63.0 7.1 0.00024 34.4 4.4 34 335-384 6-39 (140)
279 3oz2_A Digeranylgeranylglycero 62.9 6 0.00021 39.2 4.3 25 339-368 6-30 (397)
280 2vdc_G Glutamate synthase [NAD 62.5 7.2 0.00025 41.7 5.1 34 336-384 121-154 (456)
281 3cgv_A Geranylgeranyl reductas 62.1 6.7 0.00023 39.4 4.5 23 337-359 4-26 (397)
282 3abi_A Putative uncharacterize 62.0 13 0.00043 38.4 6.7 92 338-464 17-109 (365)
283 4eqs_A Coenzyme A disulfide re 62.0 6.2 0.00021 41.6 4.4 34 339-385 2-35 (437)
284 1yvv_A Amine oxidase, flavin-c 61.8 6.8 0.00023 38.4 4.4 32 338-384 3-34 (336)
285 2uzz_A N-methyl-L-tryptophan o 61.6 6.2 0.00021 39.4 4.2 35 338-387 3-37 (372)
286 2vou_A 2,6-dihydroxypyridine h 61.5 7.9 0.00027 39.6 5.0 24 336-359 4-27 (397)
287 3rp8_A Flavoprotein monooxygen 61.4 7.6 0.00026 39.7 4.9 25 335-359 21-45 (407)
288 1i36_A Conserved hypothetical 61.2 19 0.00064 34.7 7.4 21 339-359 2-22 (264)
289 4ezb_A Uncharacterized conserv 60.7 13 0.00043 37.8 6.3 33 338-384 25-57 (317)
290 3ktd_A Prephenate dehydrogenas 60.6 11 0.00036 39.3 5.8 33 337-384 8-40 (341)
291 2gqw_A Ferredoxin reductase; f 60.5 9 0.00031 39.8 5.3 38 337-387 7-44 (408)
292 2x3n_A Probable FAD-dependent 60.5 6.9 0.00024 39.8 4.4 23 337-359 6-28 (399)
293 2oln_A NIKD protein; flavoprot 60.4 7.7 0.00026 39.3 4.7 36 337-387 4-39 (397)
294 3r6d_A NAD-dependent epimerase 59.7 5.9 0.0002 36.9 3.4 87 338-449 6-95 (221)
295 3uox_A Otemo; baeyer-villiger 59.7 8.2 0.00028 42.2 5.1 35 336-385 8-42 (545)
296 2r9z_A Glutathione amide reduc 59.5 7.8 0.00027 41.0 4.7 33 337-384 4-36 (463)
297 3s2u_A UDP-N-acetylglucosamine 59.5 12 0.00042 38.2 6.1 41 419-464 84-124 (365)
298 3ew7_A LMO0794 protein; Q8Y8U8 59.3 47 0.0016 30.2 9.4 94 339-463 2-103 (221)
299 1dxl_A Dihydrolipoamide dehydr 59.3 8.9 0.00031 40.2 5.1 33 337-384 6-38 (470)
300 1vdc_A NTR, NADPH dependent th 59.3 6.5 0.00022 38.6 3.8 32 337-383 8-39 (333)
301 2raf_A Putative dinucleotide-b 59.2 9.2 0.00032 36.3 4.7 35 335-384 17-51 (209)
302 3i6i_A Putative leucoanthocyan 59.1 4.9 0.00017 40.3 2.9 103 335-460 8-117 (346)
303 3nix_A Flavoprotein/dehydrogen 59.0 6.8 0.00023 39.9 4.0 34 337-385 5-38 (421)
304 3ka7_A Oxidoreductase; structu 58.8 9.3 0.00032 39.0 5.0 32 339-385 2-33 (425)
305 3nrn_A Uncharacterized protein 58.6 9.4 0.00032 39.2 5.0 32 339-385 2-33 (421)
306 3dje_A Fructosyl amine: oxygen 58.5 8.2 0.00028 39.8 4.5 37 337-387 6-42 (438)
307 1e6u_A GDP-fucose synthetase; 58.3 7.9 0.00027 37.9 4.2 87 337-463 3-107 (321)
308 2hqm_A GR, grase, glutathione 58.0 7.6 0.00026 41.3 4.3 34 336-384 10-43 (479)
309 4id9_A Short-chain dehydrogena 58.0 17 0.00059 35.9 6.7 95 335-463 17-126 (347)
310 3nrc_A Enoyl-[acyl-carrier-pro 57.9 27 0.00091 34.1 7.9 36 334-384 23-61 (280)
311 1tt5_A APPBP1, amyloid protein 57.8 4.8 0.00016 44.6 2.8 108 335-461 30-155 (531)
312 1k0i_A P-hydroxybenzoate hydro 57.8 9.3 0.00032 38.7 4.8 22 338-359 3-24 (394)
313 1kyq_A Met8P, siroheme biosynt 57.7 6.4 0.00022 40.0 3.5 36 334-384 10-45 (274)
314 4ap3_A Steroid monooxygenase; 57.7 8 0.00027 42.4 4.5 35 336-385 20-54 (549)
315 2o7s_A DHQ-SDH PR, bifunctiona 57.7 7.2 0.00025 42.6 4.1 35 335-384 362-396 (523)
316 3c96_A Flavin-containing monoo 57.7 8.9 0.00031 39.4 4.7 23 337-359 4-26 (410)
317 2qae_A Lipoamide, dihydrolipoy 57.3 9.1 0.00031 40.3 4.7 33 337-384 2-34 (468)
318 3urh_A Dihydrolipoyl dehydroge 57.1 8.5 0.00029 40.9 4.5 34 337-385 25-58 (491)
319 2gag_B Heterotetrameric sarcos 57.0 10 0.00035 38.2 4.9 35 337-385 21-56 (405)
320 2dph_A Formaldehyde dismutase; 56.7 22 0.00076 36.7 7.5 48 318-383 171-218 (398)
321 3h28_A Sulfide-quinone reducta 56.6 9.7 0.00033 39.6 4.8 35 338-385 3-37 (430)
322 3v76_A Flavoprotein; structura 56.4 8.5 0.00029 40.7 4.3 35 337-386 27-61 (417)
323 2yqu_A 2-oxoglutarate dehydrog 56.3 9.3 0.00032 40.1 4.6 33 338-385 2-34 (455)
324 2cul_A Glucose-inhibited divis 56.2 10 0.00034 36.2 4.4 33 337-384 3-35 (232)
325 3cmm_A Ubiquitin-activating en 56.1 9.7 0.00033 45.4 5.2 36 335-384 25-60 (1015)
326 1mo9_A ORF3; nucleotide bindin 56.1 8.7 0.0003 41.4 4.4 35 336-385 42-76 (523)
327 1fl2_A Alkyl hydroperoxide red 56.1 8.8 0.0003 37.2 4.1 21 338-358 2-22 (310)
328 4gcm_A TRXR, thioredoxin reduc 56.0 9.4 0.00032 37.3 4.3 33 337-384 6-38 (312)
329 1yqd_A Sinapyl alcohol dehydro 56.0 23 0.0008 36.2 7.5 37 319-358 173-209 (366)
330 1trb_A Thioredoxin reductase; 56.0 7.2 0.00025 38.0 3.4 24 336-359 4-27 (320)
331 4fs3_A Enoyl-[acyl-carrier-pro 55.8 13 0.00045 36.2 5.3 36 334-384 3-41 (256)
332 3ntd_A FAD-dependent pyridine 55.8 12 0.00041 40.2 5.5 36 338-386 2-37 (565)
333 1p0f_A NADP-dependent alcohol 55.6 36 0.0012 34.7 8.8 75 336-436 191-270 (373)
334 2a87_A TRXR, TR, thioredoxin r 55.3 8.5 0.00029 38.2 3.9 24 336-359 13-36 (335)
335 1rsg_A FMS1 protein; FAD bindi 55.2 5.4 0.00018 42.6 2.6 24 336-359 7-30 (516)
336 1ges_A Glutathione reductase; 55.1 7.9 0.00027 40.8 3.8 33 337-384 4-36 (450)
337 1mv8_A GMD, GDP-mannose 6-dehy 55.0 25 0.00085 37.2 7.6 31 339-384 2-32 (436)
338 1zmd_A Dihydrolipoyl dehydroge 54.9 9.8 0.00034 40.1 4.5 34 337-385 6-39 (474)
339 3pid_A UDP-glucose 6-dehydroge 54.9 87 0.003 33.7 11.9 44 428-478 146-189 (432)
340 3grf_A Ornithine carbamoyltran 54.8 35 0.0012 35.6 8.6 137 273-433 96-240 (328)
341 3k30_A Histamine dehydrogenase 54.8 12 0.00042 41.8 5.5 35 336-385 390-424 (690)
342 3axb_A Putative oxidoreductase 54.7 10 0.00036 39.2 4.6 35 335-383 21-55 (448)
343 2nvu_B Maltose binding protein 54.5 5.6 0.00019 45.5 2.7 35 336-384 410-444 (805)
344 4g6h_A Rotenone-insensitive NA 54.4 7.5 0.00026 42.1 3.5 33 337-384 42-74 (502)
345 1q1r_A Putidaredoxin reductase 54.2 12 0.00043 39.1 5.1 37 337-386 4-40 (431)
346 2ew2_A 2-dehydropantoate 2-red 54.0 12 0.00041 36.6 4.7 103 338-467 4-112 (316)
347 1ebd_A E3BD, dihydrolipoamide 53.8 9.3 0.00032 40.1 4.1 32 338-384 4-35 (455)
348 3enk_A UDP-glucose 4-epimerase 53.8 30 0.001 34.0 7.5 105 337-463 5-129 (341)
349 3sx6_A Sulfide-quinone reducta 53.8 11 0.00039 39.2 4.8 36 338-385 5-40 (437)
350 1onf_A GR, grase, glutathione 53.7 9.8 0.00033 40.7 4.3 33 338-385 3-35 (500)
351 2eq6_A Pyruvate dehydrogenase 53.7 11 0.00036 40.0 4.5 35 336-385 5-39 (464)
352 3iwa_A FAD-dependent pyridine 53.7 13 0.00044 39.2 5.2 38 337-387 3-40 (472)
353 1wly_A CAAR, 2-haloacrylate re 53.7 24 0.00083 35.3 7.0 51 316-384 128-179 (333)
354 4f3y_A DHPR, dihydrodipicolina 53.6 20 0.00068 36.2 6.3 96 336-460 6-102 (272)
355 3pi7_A NADH oxidoreductase; gr 53.6 85 0.0029 31.5 11.1 94 323-449 155-253 (349)
356 3kd9_A Coenzyme A disulfide re 53.5 16 0.00054 38.2 5.8 37 337-386 3-39 (449)
357 1m6i_A Programmed cell death p 53.4 13 0.00044 39.8 5.2 38 336-386 10-47 (493)
358 3o0h_A Glutathione reductase; 53.2 12 0.00042 39.6 4.9 33 337-384 26-58 (484)
359 4gqa_A NAD binding oxidoreduct 53.2 17 0.00057 37.8 5.9 112 323-458 14-129 (412)
360 1ks9_A KPA reductase;, 2-dehyd 53.1 13 0.00044 36.0 4.7 100 339-467 2-101 (291)
361 3i3l_A Alkylhalidase CMLS; fla 52.9 13 0.00044 41.3 5.2 35 335-384 21-55 (591)
362 2bry_A NEDD9 interacting prote 52.9 12 0.00042 40.1 5.0 36 336-386 91-126 (497)
363 2zb4_A Prostaglandin reductase 52.8 21 0.00072 36.1 6.4 54 312-383 137-194 (357)
364 2cdc_A Glucose dehydrogenase g 52.8 36 0.0012 34.7 8.2 33 337-384 181-213 (366)
365 3qj4_A Renalase; FAD/NAD(P)-bi 52.8 8.4 0.00029 38.4 3.4 21 338-358 2-22 (342)
366 2qcu_A Aerobic glycerol-3-phos 52.8 11 0.00038 40.3 4.5 34 337-385 3-36 (501)
367 2e4g_A Tryptophan halogenase; 52.6 13 0.00043 40.5 5.0 38 337-386 25-62 (550)
368 3l8k_A Dihydrolipoyl dehydroge 52.5 12 0.00042 39.5 4.8 34 337-385 4-37 (466)
369 3klj_A NAD(FAD)-dependent dehy 52.5 7.6 0.00026 40.4 3.1 36 336-386 8-43 (385)
370 3s5w_A L-ornithine 5-monooxyge 52.5 9.2 0.00031 39.8 3.8 38 337-385 30-68 (463)
371 3lad_A Dihydrolipoamide dehydr 52.4 13 0.00044 39.2 4.9 33 337-384 3-35 (476)
372 5mdh_A Malate dehydrogenase; o 52.4 1.7 5.8E-05 45.2 -1.8 121 338-480 4-143 (333)
373 3ics_A Coenzyme A-disulfide re 52.4 16 0.00054 39.8 5.7 38 336-386 35-72 (588)
374 2weu_A Tryptophan 5-halogenase 52.2 10 0.00034 40.3 4.1 37 338-386 3-39 (511)
375 1e3i_A Alcohol dehydrogenase, 52.2 38 0.0013 34.6 8.3 74 336-436 195-274 (376)
376 1w4x_A Phenylacetone monooxyge 52.2 11 0.00038 40.8 4.5 35 336-385 15-49 (542)
377 1lvl_A Dihydrolipoamide dehydr 52.2 12 0.00039 39.6 4.5 33 337-384 5-37 (458)
378 4a5l_A Thioredoxin reductase; 52.1 10 0.00034 36.8 3.7 32 338-384 5-36 (314)
379 3ihm_A Styrene monooxygenase A 52.1 12 0.00039 39.3 4.5 32 338-384 23-54 (430)
380 2aqj_A Tryptophan halogenase, 52.0 11 0.00039 40.4 4.5 37 337-385 5-41 (538)
381 2v3a_A Rubredoxin reductase; a 51.7 11 0.00037 38.5 4.1 35 337-384 4-38 (384)
382 1v59_A Dihydrolipoamide dehydr 51.7 13 0.00044 39.2 4.8 34 337-385 5-38 (478)
383 2ph5_A Homospermidine synthase 51.5 14 0.00048 40.6 5.1 37 337-384 13-49 (480)
384 3gwf_A Cyclohexanone monooxyge 51.4 10 0.00036 41.4 4.1 34 337-385 8-42 (540)
385 2a8x_A Dihydrolipoyl dehydroge 51.3 12 0.00042 39.3 4.5 33 337-384 3-35 (464)
386 1piw_A Hypothetical zinc-type 51.3 30 0.001 35.1 7.4 85 319-437 166-253 (360)
387 3m2p_A UDP-N-acetylglucosamine 51.1 17 0.0006 35.4 5.3 94 338-463 3-109 (311)
388 2e1m_A L-glutamate oxidase; L- 50.9 17 0.00057 38.3 5.5 35 335-384 42-76 (376)
389 1pjq_A CYSG, siroheme synthase 50.9 14 0.00048 39.7 5.0 26 334-359 9-34 (457)
390 3cgb_A Pyridine nucleotide-dis 50.7 17 0.00057 38.6 5.5 65 309-386 8-72 (480)
391 2bc0_A NADH oxidase; flavoprot 50.6 12 0.00042 39.8 4.4 37 337-385 35-71 (490)
392 1n2s_A DTDP-4-, DTDP-glucose o 50.4 19 0.00066 34.6 5.5 86 339-463 2-104 (299)
393 1ojt_A Surface protein; redox- 50.3 13 0.00046 39.3 4.6 34 337-385 6-39 (482)
394 3vtz_A Glucose 1-dehydrogenase 50.1 29 0.00099 33.8 6.7 37 334-384 11-47 (269)
395 3dhn_A NAD-dependent epimerase 50.0 11 0.00036 35.0 3.4 72 338-437 5-77 (227)
396 1hxh_A 3BETA/17BETA-hydroxyste 50.0 38 0.0013 32.4 7.4 37 334-384 3-39 (253)
397 3hhp_A Malate dehydrogenase; M 49.5 18 0.00062 37.1 5.4 103 339-466 2-121 (312)
398 2wpf_A Trypanothione reductase 49.4 18 0.0006 38.8 5.4 31 337-382 7-38 (495)
399 2bi7_A UDP-galactopyranose mut 49.2 15 0.00052 38.0 4.8 33 337-384 3-35 (384)
400 1s3e_A Amine oxidase [flavin-c 49.2 14 0.00049 39.2 4.7 23 337-359 4-26 (520)
401 1fec_A Trypanothione reductase 49.2 18 0.00061 38.6 5.5 31 337-382 3-34 (490)
402 3l4b_C TRKA K+ channel protien 49.1 13 0.00045 35.0 3.9 31 339-384 2-32 (218)
403 3jv7_A ADH-A; dehydrogenase, n 49.0 56 0.0019 32.8 8.9 99 320-449 157-260 (345)
404 3ek2_A Enoyl-(acyl-carrier-pro 48.9 32 0.0011 32.7 6.8 36 334-384 11-49 (271)
405 3two_A Mannitol dehydrogenase; 48.8 31 0.0011 34.8 6.9 33 321-357 165-197 (348)
406 3oc4_A Oxidoreductase, pyridin 48.8 18 0.00063 37.8 5.4 36 338-386 3-38 (452)
407 3o38_A Short chain dehydrogena 48.7 16 0.00054 35.1 4.5 36 334-384 19-56 (266)
408 2vvm_A Monoamine oxidase N; FA 48.7 15 0.00052 38.5 4.8 22 338-359 40-61 (495)
409 1o94_A Tmadh, trimethylamine d 48.5 15 0.00052 41.6 5.0 35 336-385 388-422 (729)
410 3nks_A Protoporphyrinogen oxid 48.4 14 0.00048 38.4 4.4 34 338-384 3-36 (477)
411 3dk9_A Grase, GR, glutathione 48.0 14 0.00047 39.1 4.3 33 337-384 20-52 (478)
412 2fzw_A Alcohol dehydrogenase c 48.0 38 0.0013 34.4 7.5 74 336-436 190-269 (373)
413 2rgh_A Alpha-glycerophosphate 48.0 15 0.0005 40.4 4.6 34 337-385 32-65 (571)
414 3nyc_A D-arginine dehydrogenas 47.6 9.8 0.00033 37.8 2.9 34 336-385 8-41 (381)
415 2qa2_A CABE, polyketide oxygen 47.5 16 0.00054 39.4 4.7 27 336-367 11-37 (499)
416 2glx_A 1,5-anhydro-D-fructose 47.5 28 0.00096 34.7 6.3 80 339-449 2-83 (332)
417 4gde_A UDP-galactopyranose mut 47.5 18 0.0006 37.8 5.0 23 337-359 10-32 (513)
418 3lup_A DEGV family protein; PS 47.4 9.4 0.00032 38.7 2.8 89 266-368 48-144 (285)
419 3qy9_A DHPR, dihydrodipicolina 47.4 29 0.00098 34.5 6.2 21 338-358 4-24 (243)
420 2cf5_A Atccad5, CAD, cinnamyl 47.2 40 0.0014 34.3 7.5 45 321-383 168-212 (357)
421 1f8f_A Benzyl alcohol dehydrog 47.2 41 0.0014 34.2 7.6 75 336-436 190-267 (371)
422 2i0z_A NAD(FAD)-utilizing dehy 47.2 15 0.0005 38.7 4.3 34 337-385 26-59 (447)
423 2iid_A L-amino-acid oxidase; f 47.2 21 0.00072 37.5 5.5 23 337-359 33-55 (498)
424 4b7c_A Probable oxidoreductase 47.2 34 0.0012 34.2 6.8 49 316-383 132-182 (336)
425 3ihg_A RDME; flavoenzyme, anth 47.1 14 0.00048 39.6 4.3 35 336-385 4-38 (535)
426 1rjw_A ADH-HT, alcohol dehydro 47.0 30 0.001 34.9 6.4 97 321-449 153-251 (339)
427 3goh_A Alcohol dehydrogenase, 46.8 40 0.0014 33.4 7.3 39 316-358 126-164 (315)
428 2b5w_A Glucose dehydrogenase; 46.8 23 0.00079 36.0 5.6 88 335-449 171-263 (357)
429 2j3h_A NADP-dependent oxidored 46.8 30 0.001 34.6 6.4 50 316-383 138-188 (345)
430 2vns_A Metalloreductase steap3 46.7 17 0.00057 34.6 4.3 93 336-467 27-119 (215)
431 4fk1_A Putative thioredoxin re 46.6 18 0.0006 35.4 4.6 35 335-384 4-38 (304)
432 4dna_A Probable glutathione re 46.5 16 0.00053 38.5 4.4 33 337-384 5-37 (463)
433 3c4n_A Uncharacterized protein 46.4 18 0.00062 37.2 4.8 36 337-385 36-71 (405)
434 3pgx_A Carveol dehydrogenase; 46.4 1.1E+02 0.0036 29.7 10.1 37 334-384 12-48 (280)
435 2gqf_A Hypothetical protein HI 46.3 15 0.0005 38.5 4.1 34 337-385 4-37 (401)
436 3e1t_A Halogenase; flavoprotei 46.2 14 0.00047 39.6 4.0 35 336-385 6-40 (512)
437 3slg_A PBGP3 protein; structur 46.2 45 0.0015 33.3 7.6 102 335-463 22-141 (372)
438 3s2e_A Zinc-containing alcohol 46.2 29 0.00098 34.9 6.2 45 320-383 154-198 (340)
439 3c4a_A Probable tryptophan hyd 46.1 19 0.00064 36.7 4.8 20 339-358 2-21 (381)
440 2dt8_A DEGV family protein; fa 46.0 12 0.0004 37.9 3.2 130 187-368 2-139 (280)
441 2nu8_A Succinyl-COA ligase [AD 45.9 23 0.00077 35.8 5.3 85 336-457 6-91 (288)
442 3da1_A Glycerol-3-phosphate de 45.8 14 0.00047 40.5 4.0 33 337-384 18-50 (561)
443 3cmm_A Ubiquitin-activating en 45.8 14 0.00048 44.1 4.3 41 335-384 423-463 (1015)
444 3g17_A Similar to 2-dehydropan 45.5 16 0.00053 36.4 4.0 99 338-471 3-104 (294)
445 2yg5_A Putrescine oxidase; oxi 45.4 19 0.00065 37.1 4.8 23 337-359 5-27 (453)
446 1qor_A Quinone oxidoreductase; 45.4 42 0.0014 33.4 7.2 50 316-383 123-173 (327)
447 3hdq_A UDP-galactopyranose mut 45.3 20 0.00068 37.9 5.0 34 336-384 28-61 (397)
448 3ps9_A TRNA 5-methylaminomethy 45.3 17 0.00059 40.4 4.7 34 337-385 272-305 (676)
449 2hcy_A Alcohol dehydrogenase 1 45.2 35 0.0012 34.4 6.7 45 320-383 157-202 (347)
450 4dgk_A Phytoene dehydrogenase; 45.2 15 0.00051 38.5 4.0 26 338-368 2-27 (501)
451 3pvc_A TRNA 5-methylaminomethy 45.0 14 0.00047 41.4 3.9 34 337-385 264-297 (689)
452 2cdu_A NADPH oxidase; flavoenz 45.0 19 0.00064 37.7 4.7 34 339-385 2-35 (452)
453 2o23_A HADH2 protein; HSD17B10 44.9 51 0.0017 31.2 7.4 36 335-384 10-45 (265)
454 2qa1_A PGAE, polyketide oxygen 44.9 16 0.00055 39.3 4.3 28 336-368 10-37 (500)
455 4imr_A 3-oxoacyl-(acyl-carrier 44.9 65 0.0022 31.5 8.4 36 335-384 31-66 (275)
456 3sc4_A Short chain dehydrogena 44.8 98 0.0033 30.2 9.7 37 334-384 6-42 (285)
457 1v3u_A Leukotriene B4 12- hydr 44.8 37 0.0013 33.9 6.7 53 313-383 125-178 (333)
458 1nhp_A NADH peroxidase; oxidor 44.7 19 0.00066 37.6 4.8 35 339-386 2-36 (447)
459 4gbj_A 6-phosphogluconate dehy 44.7 18 0.00063 36.4 4.5 31 338-383 6-36 (297)
460 3e8x_A Putative NAD-dependent 44.7 23 0.00078 33.2 4.9 76 334-438 18-95 (236)
461 1uuf_A YAHK, zinc-type alcohol 44.5 38 0.0013 34.8 6.9 34 319-356 181-214 (369)
462 2wm3_A NMRA-like family domain 44.5 23 0.00078 34.4 5.0 102 337-464 5-115 (299)
463 1cjc_A Protein (adrenodoxin re 44.4 25 0.00085 37.5 5.6 35 337-384 6-40 (460)
464 1xdi_A RV3303C-LPDA; reductase 44.3 18 0.0006 38.6 4.4 36 338-385 3-38 (499)
465 1ps9_A 2,4-dienoyl-COA reducta 44.2 17 0.00058 40.5 4.5 35 336-385 372-406 (671)
466 4dvj_A Putative zinc-dependent 44.2 1.4E+02 0.0047 30.4 11.0 86 336-449 171-260 (363)
467 3e9m_A Oxidoreductase, GFO/IDH 44.2 30 0.001 34.9 5.9 82 336-448 4-86 (330)
468 2bcg_G Secretory pathway GDP d 44.1 19 0.00066 37.9 4.7 37 336-387 10-46 (453)
469 1zcj_A Peroxisomal bifunctiona 43.9 17 0.00058 39.1 4.3 33 337-384 37-69 (463)
470 2pyx_A Tryptophan halogenase; 43.9 18 0.00061 38.9 4.5 24 337-360 7-30 (526)
471 3st7_A Capsular polysaccharide 43.8 61 0.0021 32.5 8.2 79 339-463 2-94 (369)
472 1vj0_A Alcohol dehydrogenase, 43.8 27 0.00092 35.9 5.6 49 317-383 179-228 (380)
473 3g3e_A D-amino-acid oxidase; F 43.8 20 0.00068 35.7 4.5 38 339-385 2-39 (351)
474 3lov_A Protoporphyrinogen oxid 43.8 31 0.0011 35.9 6.1 35 337-384 4-38 (475)
475 3ruf_A WBGU; rossmann fold, UD 43.5 31 0.0011 34.1 5.9 105 335-463 23-151 (351)
476 2d8a_A PH0655, probable L-thre 43.4 31 0.0011 34.8 6.0 88 335-449 166-257 (348)
477 2jhf_A Alcohol dehydrogenase E 43.4 41 0.0014 34.2 6.9 75 336-436 191-270 (374)
478 3hn2_A 2-dehydropantoate 2-red 43.3 16 0.00054 36.6 3.7 98 338-467 3-107 (312)
479 3obb_A Probable 3-hydroxyisobu 43.2 38 0.0013 34.3 6.5 62 338-433 4-65 (300)
480 2x8g_A Thioredoxin glutathione 43.1 19 0.00065 39.3 4.6 33 336-383 106-138 (598)
481 2ivd_A PPO, PPOX, protoporphyr 43.1 16 0.00055 38.0 3.8 23 337-359 16-38 (478)
482 3atr_A Conserved archaeal prot 43.0 11 0.00037 39.6 2.5 21 338-358 7-27 (453)
483 1i8t_A UDP-galactopyranose mut 42.6 17 0.00058 37.3 3.9 22 338-359 2-23 (367)
484 1gte_A Dihydropyrimidine dehyd 42.4 17 0.00058 42.9 4.3 34 337-384 187-220 (1025)
485 3eag_A UDP-N-acetylmuramate:L- 42.3 21 0.00072 36.2 4.5 22 338-359 5-27 (326)
486 4gut_A Lysine-specific histone 42.1 27 0.00094 40.2 5.8 24 336-359 335-358 (776)
487 3ic9_A Dihydrolipoamide dehydr 42.1 18 0.0006 38.7 4.0 32 338-384 9-40 (492)
488 1cdo_A Alcohol dehydrogenase; 42.0 45 0.0015 34.0 6.9 74 336-436 192-271 (374)
489 2r0c_A REBC; flavin adenine di 41.7 21 0.0007 38.8 4.5 23 337-359 26-48 (549)
490 1xhc_A NADH oxidase /nitrite r 41.7 15 0.00051 37.7 3.3 35 337-387 8-42 (367)
491 2dkn_A 3-alpha-hydroxysteroid 41.4 22 0.00074 33.3 4.1 68 339-438 3-73 (255)
492 1yb5_A Quinone oxidoreductase; 41.4 57 0.0019 33.2 7.5 50 316-383 153-203 (351)
493 1zej_A HBD-9, 3-hydroxyacyl-CO 41.2 23 0.0008 36.0 4.6 23 336-359 11-33 (293)
494 3qfa_A Thioredoxin reductase 1 41.2 22 0.00075 38.3 4.6 34 336-384 31-64 (519)
495 1rp0_A ARA6, thiazole biosynth 41.1 22 0.00075 34.9 4.3 37 336-386 38-74 (284)
496 2b9w_A Putative aminooxidase; 40.9 13 0.00045 38.0 2.7 24 336-359 5-28 (424)
497 2q1w_A Putative nucleotide sug 40.8 28 0.00096 34.5 5.0 104 335-463 19-137 (333)
498 1pj5_A N,N-dimethylglycine oxi 40.1 21 0.00071 40.8 4.4 36 337-386 4-39 (830)
499 3nx4_A Putative oxidoreductase 40.0 67 0.0023 31.8 7.7 43 323-383 136-179 (324)
500 4b63_A L-ornithine N5 monooxyg 39.9 17 0.00058 39.1 3.5 42 340-384 42-85 (501)
No 1
>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A
Probab=100.00 E-value=1.5e-202 Score=1638.73 Aligned_cols=541 Identities=44% Similarity=0.826 Sum_probs=529.0
Q ss_pred cccccccCCCCCcCCCCCHHHhhhcccCCCCCCcccCHHHHHHHHHHHHhhhhcccCCCCCCCChhhHHHHHHHhhcccc
Q 040403 45 RSLDILHDPWFNKGTAFSMTERDRLDLRGLLPPNVMSTDQQIERFMVDLKRLEVQARDGPTDPNALAKWRILNRLHDRNE 124 (623)
Q Consensus 45 ~g~~ll~~p~~NKGtAFt~~ER~~l~L~GLLPp~v~tle~Q~~r~~~~~~~~~~~~~~~~~~~~~l~ky~~L~~L~~rNe 124 (623)
+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|+|.||++++ ++|+||+||++||+|||
T Consensus 2 ~G~~lL~~p~~NKGtAFt~~ER~~l~l~GLLPp~v~t~e~Q~~r~~~~~~~~~----------~~l~k~~~L~~L~~~Ne 71 (555)
T 1gq2_A 2 KGYEVLRDPHLNKGMAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLT----------SDLDRYILLMSLQDRNE 71 (555)
T ss_dssp CTTHHHHCTTTCCGGGSCHHHHHHTTCTTSSCSCBCCHHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHHCH
T ss_pred ChhhhccCCcccCCCCCCHHHHHHCCCccCCCCCcCCHHHHHHHHHHHHhcCC----------CcHHHHHHHHHhcCcce
Confidence 69999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred hhhhhhhccCccccCCcccchhhHHHHHHHhhhhcCCCcccccccChhhHHHHHhcCCCCCceEEEEecCceeeccCCCC
Q 040403 125 TMYYKVLIANIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAEDRGEMKSMVYNWPAEQVDMIVVTDGSRILGLGDLG 204 (623)
Q Consensus 125 ~LFy~ll~~~~~e~lPivYTPtVg~ac~~~s~~~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG 204 (623)
+||||++.+|++|+|||+||||||++|++||++||+|+|+|||++|+|+++++++|||.++|++||||||||||||||||
T Consensus 72 ~Lfy~ll~~~~~e~lpivYTP~V~~ac~~~s~i~~~p~g~yis~~d~~~i~~~l~n~~~~~~~v~VVTDG~~ILGLGD~G 151 (555)
T 1gq2_A 72 KLFYKVLTSDIERFMPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIATMLQSWPESVIKAIVVTDGERILGLGDLG 151 (555)
T ss_dssp HHHHHHHHHTHHHHHHHHSTTHHHHHHHTHHHHCSSCCSEEEEGGGTTCHHHHHHTSSCSCCCEEEEECSSSCGGGCCCG
T ss_pred eeehhhHhhhHHHhcCcccCchHHHHHHHHHHHhcChhhhhcccCCHHHHHHHHhcCCCCCcEEEEEEccccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccchhhhHHHHHHhcCCCCCCeeeEEeeccCCccccccCcCCCCcCCCCCCchhhhHhHHHHHHHHHHhC-Cceeee
Q 040403 205 VQGIGIAVGKLDLYVAAAGINPQRVLPIMIDVGTTNEKLLKDPLYLGLQEHRLDGDEYVSVIDEFMEAIFTRW-PNVIVQ 283 (623)
Q Consensus 205 ~~GmgI~iGKl~LY~a~gGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~Rv~g~~Y~~~vdefv~av~~~~-P~~lIq 283 (623)
++||+|||||++|||+||||||++|||||||+|||||+||+||+||||||+|++|++||+|+||||++|+.+| |+++||
T Consensus 152 ~~g~~ipvGKl~Ly~~~aGIdP~~~lPI~LD~GTnn~~LL~DplYlG~r~~Rv~g~eyd~fvdefv~av~~~fGp~~~I~ 231 (555)
T 1gq2_A 152 CYGMGIPVGKLALYTACGGVKPHQCLPVMLDVGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFMEAVTSRYGMNCLIQ 231 (555)
T ss_dssp GGGGHHHHHHHHHHHHTTCCCGGGEEEEEEESCCCCHHHHHCTTCCSCSSCCCCTHHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred CCccccchhHHHHhHhccCCChhheeeeEeecCCCchhhcCCCccCCcCCCCCchHHHHHHHHHHHHHHHHhhCCCcEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred cccCCCchHHHHHHHHhccCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHh
Q 040403 284 FEDFQSKWAFKLLQRYRYKYRMFNDDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARM 363 (623)
Q Consensus 284 fEDf~~~nAf~lL~ryr~~~~~FNDDiQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~ 363 (623)
||||+++|||+||+|||++||||||||||||+|+|||||||+|++|++ |+||||||+|||+||+|||+||+.+|+++
T Consensus 232 ~EDf~~~~af~il~ryr~~ipvFnDDiqGTa~V~lAgllnAlki~gk~---l~d~riv~~GAGaAg~gia~ll~~~~~~~ 308 (555)
T 1gq2_A 232 FEDFANANAFRLLHKYRNKYCTFNDDIQGTASVAVAGLLAALRITKNR---LSDHTVLFQGAGEAALGIANLIVMAMQKE 308 (555)
T ss_dssp ECSCCHHHHHHHHHHHTTTSEEEETTTHHHHHHHHHHHHHHHHHHTSC---GGGCCEEEECCSHHHHHHHHHHHHHHHHH
T ss_pred ecccCCccHHHHHHHHhccCCEecCccchHHHHHHHHHHHHHHHhCCC---hhhcEEEEECCCHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999 99999999999999999999999999998
Q ss_pred cCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCH
Q 040403 364 LGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSK 443 (623)
Q Consensus 364 ~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~ 443 (623)
|+|+ |||++||||||++|||+++|++|+++|++||+++ ...++|+|||+.+|||||||+|++||+||+
T Consensus 309 -G~~~---eeA~~~i~~~D~~Gli~~~r~~l~~~k~~~A~~~--------~~~~~L~eav~~vkp~vlIG~S~~~g~ft~ 376 (555)
T 1gq2_A 309 -GVSK---EEAIKRIWMVDSKGLIVKGRASLTPEKEHFAHEH--------CEMKNLEDIVKDIKPTVLIGVAAIGGAFTQ 376 (555)
T ss_dssp -TCCH---HHHHTTEEEEETTEECBTTCSSCCTTGGGGCBSC--------CCCCCHHHHHHHHCCSEEEECSCCTTCSCH
T ss_pred -CCCh---HHHhCcEEEEECCCeeeCCCCCchHHHHHHHhhc--------CCCCCHHHHHhhcCCCEEEEecCCCCCCCH
Confidence 9999 9999999999999999999999999999999643 235689999999999999999999999999
Q ss_pred HHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCccccCCCeeccCCCCccccchhHHHHHHHH
Q 040403 444 EVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGSPFKDVDLGNGHIGHCNQGNNMYLFPGVGLGTLL 523 (623)
Q Consensus 444 evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~Grai~AtGsPF~pv~~~~G~~~~p~Q~NN~yiFPGiglG~~~ 523 (623)
|||++| +++|+|||||||||||+++||+||||++||+|+|||||||||+||+|++||+++||||||+|+|||||||+++
T Consensus 377 evv~~M-a~~~~~PIIFaLSNPt~~aE~~pe~a~~~t~G~aivATGspf~pv~~~~Grs~~pnQ~NN~liFPGi~~Gal~ 455 (555)
T 1gq2_A 377 QILQDM-AAFNKRPIIFALSNPTSKAECTAEQLYKYTEGRGIFASGSPFDPVTLPSGQTLYPGQGNNSYVFPGVALGVIS 455 (555)
T ss_dssp HHHHHH-HHHCSSCEEEECCSSGGGCSSCHHHHHHHTTTCCEEEESSCCCCEECTTSCEECCEECCGGGTHHHHHHHHHH
T ss_pred HHHHHH-HhcCCCCEEEECCCCCCccCcCHHHHHHhccCCEEEEeCCCCCCeeecCCcEeccccccceeeccchhhhhHh
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccCHHHHHHHHHHHHcccCcccccCCccccCCCCcccchHHHHHHHHHHHHHcCccccccCccchhcccCCHHHHH
Q 040403 524 SGSRIISDGMLQAAAECLAEYMTEEEVVKGKIYPSISSIRNITKEVAAAVVKEALEEDLAEGYRGVDARELQRFNQEELL 603 (623)
Q Consensus 524 ~~a~~Itd~m~~aAA~aLA~~v~~~~l~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~GlA~~~~~~~~~~~p~~~~~dl~ 603 (623)
++|++|||+|+++||++||++++++++..++|||+++++|+||.+||.||+++|+++|+|+ ..++ |+|+.
T Consensus 456 ~~A~~Itd~M~~aAA~alA~~v~~~~~~~~~i~P~~~~ir~vs~~VA~aVa~~A~~~GvA~--------~~~~--~~d~~ 525 (555)
T 1gq2_A 456 CGLKHIGDDVFLTTAEVIAQEVSEENLQEGRLYPPLVTIQQVSLKIAVRIAKEAYRNNTAS--------TYPQ--PEDLE 525 (555)
T ss_dssp HTCSSCCHHHHHHHHHHHHHTCCHHHHHHTCSSCCGGGHHHHHHHHHHHHHHHHHHTTCCC--------CSSC--CSSHH
T ss_pred cCCeECCHHHHHHHHHHHHhccccccCCCCcccCCcchhhHhHHHHHHHHHHHHHHcCCCC--------CCCC--hHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 2333 68899
Q ss_pred HHHHhCCcccCCCCCccc
Q 040403 604 EFVELNMWHPEYPTLVYR 621 (623)
Q Consensus 604 ~~I~~~mw~P~Y~~~v~~ 621 (623)
+||+++||+|+|++++..
T Consensus 526 ~~i~~~~~~P~Y~~~~~~ 543 (555)
T 1gq2_A 526 AFIRSQVYSTDYNCFVAD 543 (555)
T ss_dssp HHHHTTSCCCSCCCCSCC
T ss_pred HHHHHhccCCCCCCcccc
Confidence 999999999999998643
No 2
>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A*
Probab=100.00 E-value=9.1e-202 Score=1636.74 Aligned_cols=544 Identities=43% Similarity=0.787 Sum_probs=529.9
Q ss_pred cccccccccCCCCCcCCCCCHHHhhhcccCCCCCCcccCHHHHHHHHHHHHhhhhcccCCCCCCCChhhHHHHHHHhhcc
Q 040403 43 HKRSLDILHDPWFNKGTAFSMTERDRLDLRGLLPPNVMSTDQQIERFMVDLKRLEVQARDGPTDPNALAKWRILNRLHDR 122 (623)
Q Consensus 43 ~~~g~~ll~~p~~NKGtAFt~~ER~~l~L~GLLPp~v~tle~Q~~r~~~~~~~~~~~~~~~~~~~~~l~ky~~L~~L~~r 122 (623)
..+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|+|.||++++ ++|+||+||++||+|
T Consensus 2 ~~~G~~lL~~p~~NKGtAFt~~ER~~l~l~GLLPp~v~t~e~Q~~r~~~~~~~~~----------~~l~k~~~L~~L~~~ 71 (564)
T 1pj3_A 2 KEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNLKKMT----------SPLEKYIYIMGIQER 71 (564)
T ss_dssp CCCSTHHHHSTTTCCGGGSCHHHHHHTTCTTTSCSCCCCHHHHHHHHHHHHHHCC----------SHHHHHHHHHHHHTT
T ss_pred CCchHHHhCCCcccCCCCCCHHHHHhCCCCcCCCCCcCCHHHHHHHHHHHHhcCC----------CcHHHHHHHHHhhcc
Confidence 3579999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred cchhhhhhhccCccccCCcccchhhHHHHHHHhhhhcCCCcccccccChhhHHHHHhcCCCCCceEEEEecCceeeccCC
Q 040403 123 NETMYYKVLIANIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAEDRGEMKSMVYNWPAEQVDMIVVTDGSRILGLGD 202 (623)
Q Consensus 123 Ne~LFy~ll~~~~~e~lPivYTPtVg~ac~~~s~~~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGD 202 (623)
||+||||++.+|++|+|||+||||||++|++||++||+|+|+|||++|+|+++++++|||.++|++||||||||||||||
T Consensus 72 Ne~Lfy~ll~~~~~e~lpivYTP~Vg~ac~~~s~i~~~p~g~ylsi~d~~~i~~~l~n~~~~~v~v~VVTDG~~ILGLGD 151 (564)
T 1pj3_A 72 NEKLFYRILQDDIESLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGD 151 (564)
T ss_dssp CHHHHHHHHHHCHHHHHHHHSTTHHHHHHHTHHHHCSSCCSEEEEGGGTTCHHHHHTTCSCSCCCEEEEECSSSCTTSCC
T ss_pred cceeehhhhhhCHHHhCCeeeCccHHHHHHHHHHHhcCcccccccccCHHHHHHHHHhCCCCCceEEEEEcccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccchhhhHHHHHHhcCCCCCCeeeEEeeccCCccccccCcCCCCcCCCCCCchhhhHhHHHHHHHHHHhC-Ccee
Q 040403 203 LGVQGIGIAVGKLDLYVAAAGINPQRVLPIMIDVGTTNEKLLKDPLYLGLQEHRLDGDEYVSVIDEFMEAIFTRW-PNVI 281 (623)
Q Consensus 203 lG~~GmgI~iGKl~LY~a~gGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~Rv~g~~Y~~~vdefv~av~~~~-P~~l 281 (623)
||++||+|||||++|||+||||||++|||||||+||||++||+||+||||||+|++|++||+|+||||++|+.+| |+++
T Consensus 152 ~G~~gm~ipvGKl~Ly~~~aGIdP~~~lPI~lDvgTnn~~LL~DPlYlG~r~~Rv~g~eYd~fvdefv~av~~~fG~~~~ 231 (564)
T 1pj3_A 152 LGVYGMGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYMGLYQKRDRTQQYDDLIDEFMKAITDRYGRNTL 231 (564)
T ss_dssp CGGGGGHHHHHHHHHHHHHHCCCGGGEEEEEEESCCCCTTGGGCTTCCSCSSCCCCSHHHHHHHHHHHHHHHHHHCTTCE
T ss_pred CCCCcccceehHHHHHHhccCCChhheeeeEeecCcCchhhccCCcccCcCCCCCchhhHHHHHHHHHHHHHHHcCCCcE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred eecccCCCchHHHHHHHHhccCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHH
Q 040403 282 VQFEDFQSKWAFKLLQRYRYKYRMFNDDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMA 361 (623)
Q Consensus 282 IqfEDf~~~nAf~lL~ryr~~~~~FNDDiQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~ 361 (623)
||||||+++|||+||+|||++||||||||||||+|+|||||||+|++|++ |+||||||+|||+||+|||+||+++|+
T Consensus 232 I~~EDf~~~~af~il~ryr~~ipvFnDDiqGTa~V~lAgllnAlki~gk~---l~d~riv~~GAGaAgigia~ll~~~m~ 308 (564)
T 1pj3_A 232 IQFEDFGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKP---ISEHKILFLGAGEAALGIANLIVMSMV 308 (564)
T ss_dssp EEECSCCHHHHHHHHHHHTTTSSEEEHHHHHHHHHHHHHHHHHHHHHCCC---GGGCCEEEECCSHHHHHHHHHHHHHHH
T ss_pred EeehhcCCccHHHHHHHhccCCCEeCCCCchHHHHHHHHHHHHHHHhCCc---HhHcEEEEeCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HhcCCCcchhhhccCeEEEEccCCcccCCC-CCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCC
Q 040403 362 RMLGNNESAFDSARSQFWVVDAKGLITEDR-ENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGL 440 (623)
Q Consensus 362 ~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r-~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~ 440 (623)
++ |+|+ |||++||||||++|||+++| ++|+++|++||+++++ ...++|+|||+.+|||||||+|++||+
T Consensus 309 ~~-Gl~~---eeA~~~i~~~D~~Gli~~~r~~~l~~~k~~~A~~~~~------~~~~~L~eav~~vkp~vlIG~S~~~g~ 378 (564)
T 1pj3_A 309 EN-GLSE---QEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPE------SIPDTFEDAVNILKPSTIIGVAGAGRL 378 (564)
T ss_dssp HT-TCCH---HHHHHTEEEEETTEECBTTCSSCCCTTTGGGCBCCCS------SCCSSHHHHHHHHCCSEEEECCCSSCC
T ss_pred Hc-CCCh---HHhhCcEEEEeCCCeEECCCcccchHHHHHHHHhcCc------cccCCHHHHHhhcCCCEEEEeCCCCCC
Confidence 98 9999 99999999999999999999 7899999999975433 113689999999999999999999999
Q ss_pred CCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCccccCCCeeccCCCCccccchhHHHHH
Q 040403 441 FSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGSPFKDVDLGNGHIGHCNQGNNMYLFPGVGLG 520 (623)
Q Consensus 441 Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~Grai~AtGsPF~pv~~~~G~~~~p~Q~NN~yiFPGiglG 520 (623)
||+|||++| +++|+|||||||||||+++||+||||++||+|+|||||||||+||+|++||+|+||||||+|+|||||||
T Consensus 379 ft~evv~~M-a~~~~~PIIFaLSNPt~~aE~~pe~a~~~t~G~aivATGspf~pv~~~~G~~~~pnQ~NN~liFPGi~~G 457 (564)
T 1pj3_A 379 FTPDVIRAM-ASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALA 457 (564)
T ss_dssp SCHHHHHHH-HHHCSSCEEEECCSSGGGCSCCHHHHHHHTTTCCEEEESSCCCCEECTTSCEECCEECCGGGTHHHHHHH
T ss_pred CCHHHHHHH-HhcCCCCEEEECCCCCCccCcCHHHHHhhccCCEEEEeCCCCCceeecCCceecccccceeeeccchhhh
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcccCHHHHHHHHHHHHcccCcccccCCccccCCCCcccchHHHHHHHHHHHHHcCccccccCccchhcccCCHH
Q 040403 521 TLLSGSRIISDGMLQAAAECLAEYMTEEEVVKGKIYPSISSIRNITKEVAAAVVKEALEEDLAEGYRGVDARELQRFNQE 600 (623)
Q Consensus 521 ~~~~~a~~Itd~m~~aAA~aLA~~v~~~~l~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~GlA~~~~~~~~~~~p~~~~~ 600 (623)
+++++|++|||+|+++||++||++++++++..++|||+++++|+||.+||.||+++|+++|+|+ ..++ |+
T Consensus 458 al~~~A~~Itd~M~~aAA~aLA~~v~~~~~~~~~i~P~~~~~r~vs~~VA~aVa~~A~~~GvA~--------~~~~--~~ 527 (564)
T 1pj3_A 458 VILCNTRHISDSVFLEAAKALTSQLTDEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKMAF--------RYPE--PE 527 (564)
T ss_dssp HHHTTCSCCCHHHHHHHHHHHHTTCCHHHHHTTCSSCCGGGHHHHHHHHHHHHHHHHHHTTCCC--------CSSC--CS
T ss_pred hHhcCCeECCHHHHHHHHHHHHhhcccccCCCCcccCCcchhhHhHHHHHHHHHHHHHHcCCCC--------CCCC--hH
Confidence 9999999999999999999999999999999999999999999999999999999999999998 2333 68
Q ss_pred HHHHHHHhCCcccCCCCCcc
Q 040403 601 ELLEFVELNMWHPEYPTLVY 620 (623)
Q Consensus 601 dl~~~I~~~mw~P~Y~~~v~ 620 (623)
|+.+||+++||+|.|++++.
T Consensus 528 d~~~~i~~~~~~p~Y~~~~~ 547 (564)
T 1pj3_A 528 DKAKYVKERTWRSEYDSLLP 547 (564)
T ss_dssp SHHHHHHHTCCCCSCCCCCC
T ss_pred HHHHHHHHHhhCCCCCCccc
Confidence 89999999999999999864
No 3
>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A*
Probab=100.00 E-value=1.6e-201 Score=1638.80 Aligned_cols=545 Identities=42% Similarity=0.776 Sum_probs=531.9
Q ss_pred ceeecccccccccCCCCCcCCCCCHHHhhhcccCCCCCCcccCHHHHHHHHHHHHhhhhcccCCCCCCCChhhHHHHHHH
Q 040403 39 PVIVHKRSLDILHDPWFNKGTAFSMTERDRLDLRGLLPPNVMSTDQQIERFMVDLKRLEVQARDGPTDPNALAKWRILNR 118 (623)
Q Consensus 39 ~~~~~~~g~~ll~~p~~NKGtAFt~~ER~~l~L~GLLPp~v~tle~Q~~r~~~~~~~~~~~~~~~~~~~~~l~ky~~L~~ 118 (623)
++.+..+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|+|.||++++ ++|+||+||++
T Consensus 32 ~~~~~~~G~~lL~~p~~NKGtAFt~~ER~~l~L~GLLPp~v~t~e~Q~~r~~~~~~~~~----------~~l~k~~~L~~ 101 (605)
T 1o0s_A 32 RVTPKKRSAELLKEPRLNKGMGFSLYERQYLGLHGLLPPAFMTQEQQAYRVITKLREQP----------NDLARYIQLDG 101 (605)
T ss_dssp CCCCSCCHHHHHTCTTTCCGGGSCHHHHHHTTCTTTSCSCCCCHHHHHHHHHHHHHHSS----------SHHHHHHHHHH
T ss_pred ccccCcchHHHhCCCcccCCCCCCHHHHHHCCCCcCCCCCcCCHHHHHHHHHHHHHcCC----------CcHHHHHHHHH
Confidence 45567899999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred hhcccchhhhhhhccCccccCCcccchhhHHHHHHHhhhhcCCCcccccccCh--hhHHHHHhcCCCCCceEEEEecCce
Q 040403 119 LHDRNETMYYKVLIANIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAEDR--GEMKSMVYNWPAEQVDMIVVTDGSR 196 (623)
Q Consensus 119 L~~rNe~LFy~ll~~~~~e~lPivYTPtVg~ac~~~s~~~r~p~Glyis~~d~--g~i~~il~nwp~~~v~viVVTDG~r 196 (623)
||+|||+||||++.+|++|+|||+||||||++|++||++||+|+|+|||++|+ |+++++++|||.++|++||||||||
T Consensus 102 L~~~Ne~Lfyrll~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~g~yis~~d~~~~~i~~~l~n~~~~~~~v~VVTDG~~ 181 (605)
T 1o0s_A 102 LQDRNEKLFYRVVCDHVKELMPIVYTPTVGLACQNFGYIYRKPKGLYITINDNSVSKIYQILSNWHEEDVRAIVVTDGER 181 (605)
T ss_dssp HHHHCHHHHHHHHHHTHHHHHHHHSTTHHHHHHHHHCSCCCCCCSEEEEGGGCSHHHHHHHHTTSSCSCCCEEEEECSSC
T ss_pred hhcccchhhhhhhhhCHHHhCCeeeCccHHHHHHHHHHHhcChHhhhccccCcccchHHHHHhcCCCCCceEEEEEcccc
Confidence 99999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred eeccCCCCCccccchhhhHHHHHHhcCCCCCCeeeEEeeccCCccccccCcCCCCcCCCCCCchhhhHhHHHHHHHHHHh
Q 040403 197 ILGLGDLGVQGIGIAVGKLDLYVAAAGINPQRVLPIMIDVGTTNEKLLKDPLYLGLQEHRLDGDEYVSVIDEFMEAIFTR 276 (623)
Q Consensus 197 ILGLGDlG~~GmgI~iGKl~LY~a~gGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~Rv~g~~Y~~~vdefv~av~~~ 276 (623)
||||||||++||+|||||++|||+||||||++|||||||+|||||+||+|||||||||+|++|++||+|+||||++|+.+
T Consensus 182 ILGLGD~G~~g~~ipvGKl~Ly~~~aGIdP~~~lPI~LDvGTnne~LL~DPlYlG~r~~Rv~g~~Yd~fvdefv~av~~~ 261 (605)
T 1o0s_A 182 ILGLGDLGAYGIGIPVGKLALYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFYIGLRHKRVRGKDYDTLLDNFMKACTKK 261 (605)
T ss_dssp BTTTBCCGGGGGHHHHHHHHHHHHHHCCCGGGEEEEEEESCCCCHHHHHCTTCCSCSSCCCCSHHHHHHHHHHHHHHHHH
T ss_pred ceecCCCCCCcCcceeeHHHHHHhccCCChhheeeeEeccCCChhhhccCCcccCcCCCCCChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CceeeecccCCCchHHHHHHHHhccCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHH
Q 040403 277 W-PNVIVQFEDFQSKWAFKLLQRYRYKYRMFNDDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNA 355 (623)
Q Consensus 277 ~-P~~lIqfEDf~~~nAf~lL~ryr~~~~~FNDDiQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~l 355 (623)
| |+++||||||+++|||+||+|||++||||||||||||+|+|||||||+|++|++ |+||||||+|||+||+|||+|
T Consensus 262 fGp~~~I~~EDf~~p~af~il~ryr~~ipvFnDDiqGTA~V~lAgllnAlki~gk~---l~d~riv~~GAGaAgigia~l 338 (605)
T 1o0s_A 262 YGQKTLIQFEDFANPNAFRLLDKYQDKYTMFNDDIQGTASVIVAGLLTCTRVTKKL---VSQEKYLFFGAGAASTGIAEM 338 (605)
T ss_dssp HCTTCEEEECSCCHHHHHHHHHHHTTTSEEEEHHHHHHHHHHHHHHHHHHHHHCCC---GGGCCEEEECCSHHHHHHHHH
T ss_pred hCCCcEeeHhhcCCccHHHHHHHhccCCCeeCcccchHHHHHHHHHHHHHHHhCCC---hhhcEEEEECCCHHHHHHHHH
Confidence 9 999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEecc
Q 040403 356 ARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLS 435 (623)
Q Consensus 356 l~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S 435 (623)
|+.+|+++ |+|+ |||++||||||++|||+++|++|+++|++||+++ ...++|+|||+.+|||||||+|
T Consensus 339 l~~~m~~~-Gl~~---eeA~~~i~~vD~~Gli~~~r~~l~~~k~~~A~~~--------~~~~~L~eav~~vkpdVlIG~S 406 (605)
T 1o0s_A 339 IVHQMQNE-GISK---EEACNRIYLMDIDGLVTKNRKEMNPRHVQFAKDM--------PETTSILEVIRAARPGALIGAS 406 (605)
T ss_dssp HHHHHHTT-TCCH---HHHHHTEEEEETTEECBTTCSSCCGGGTTTCBSS--------CCCCCHHHHHHHHCCSEEEECS
T ss_pred HHHHHHHc-CCCh---hhhhCeEEEEECCCceeCCCCCchHHHHHHHhhc--------CCCCCHHHHHhhcCCCEEEEec
Confidence 99999998 9999 9999999999999999999999999999999643 2356899999999999999999
Q ss_pred CCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCccccCCCeeccCCCCccccchh
Q 040403 436 AVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGSPFKDVDLGNGHIGHCNQGNNMYLFP 515 (623)
Q Consensus 436 ~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~Grai~AtGsPF~pv~~~~G~~~~p~Q~NN~yiFP 515 (623)
++||+||+|||++| +++|+|||||||||||+++||+||||++||+|+|||||||||+||+| +||+++||||||+|+||
T Consensus 407 ~~~g~ft~evv~~M-a~~~~~PIIFaLSNPt~~aE~~pe~a~~~t~G~aivATGspF~pV~~-~Grs~~pnQ~NN~liFP 484 (605)
T 1o0s_A 407 TVRGAFNEEVIRAM-AEINERPIIFALSNPTSKAECTAEEAYTFTNGAALYASGSPFPNFEL-NGHTYKPGQGNNAYIFP 484 (605)
T ss_dssp SCTTCSCHHHHHHH-HHHCSSCEEEECCSSGGGCSSCHHHHHHTTTSCCEEEESSCCCCEEE-TTEEECCEECCGGGTHH
T ss_pred CCCCCCCHHHHHHH-HhcCCCCEEEECCCCCCCcCcCHHHHHhhccCCEEEEECCCCCCeeE-CCEEeccccccceeecc
Confidence 99999999999999 99999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHcCCcccCHHHHHHHHHHHHcccCcccccCCccccCCCCcccchHHHHHHHHHHHHHcCccccccCccchhcc
Q 040403 516 GVGLGTLLSGSRIISDGMLQAAAECLAEYMTEEEVVKGKIYPSISSIRNITKEVAAAVVKEALEEDLAEGYRGVDARELQ 595 (623)
Q Consensus 516 GiglG~~~~~a~~Itd~m~~aAA~aLA~~v~~~~l~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~GlA~~~~~~~~~~~p 595 (623)
|||||+++++|++|||+|+++||++||++++++++..++|||+++++|+||.+||.||+++|+++|+|+ ..+
T Consensus 485 Gi~lGal~~~A~~Itd~M~~aAA~aLA~~v~~~~~~~~~i~P~~~dir~vs~~VA~AVa~~A~~~GvA~--------~~~ 556 (605)
T 1o0s_A 485 GVALGTILFQIRHVDNDLFLLAAKKVASCVTEDSLKVGRVYPQLKEIREISIQIAVEMAKYCYKNGTAN--------LYP 556 (605)
T ss_dssp HHHHHHHHHTBSCCCHHHHHHHHHHHHHTCCHHHHTTTCCSCCGGGHHHHHHHHHHHHHHHHHHTTCBC--------SSS
T ss_pred chhhhhhhcCCeEcCHHHHHHHHHHHHhhcccccCCCCcccCCcchhhHhHHHHHHHHHHHHHHcCCCC--------CCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 233
Q ss_pred cCCHHHHHHHHHhCCcccCCCCCcc
Q 040403 596 RFNQEELLEFVELNMWHPEYPTLVY 620 (623)
Q Consensus 596 ~~~~~dl~~~I~~~mw~P~Y~~~v~ 620 (623)
+ |+|+.+||+++||+|+|++++.
T Consensus 557 ~--~~d~~~~i~~~~w~P~Y~~~~~ 579 (605)
T 1o0s_A 557 Q--PEDLEKYVRAQVYNTEYEELIN 579 (605)
T ss_dssp C--CSCHHHHHHHHSCCCSCCCCSC
T ss_pred C--hHHHHHHHHHhccCCCCCcccc
Confidence 3 6889999999999999999864
No 4
>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}
Probab=100.00 E-value=2.4e-121 Score=984.07 Aligned_cols=396 Identities=27% Similarity=0.381 Sum_probs=359.1
Q ss_pred hcccchhhhhhhccCccccCCcccchhhHHHHHHHhhhhcCCCcccccccChhhHHHHHhcCCCCCceEEEEecCceeec
Q 040403 120 HDRNETMYYKVLIANIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAEDRGEMKSMVYNWPAEQVDMIVVTDGSRILG 199 (623)
Q Consensus 120 ~~rNe~LFy~ll~~~~~e~lPivYTPtVg~ac~~~s~~~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILG 199 (623)
..+-++. .++.+++ .++|||+||||||++|++|++ |+++++++..+| ++||||||||||||
T Consensus 44 ~GKi~v~-~~~~~~~-~~dLslaYTPgVa~~c~~i~~-------------dp~~~~~yt~kg----n~VaVVTDG~aILG 104 (487)
T 3nv9_A 44 KGKIQIM-PKCTLAG-FNWFNAYYTPGVSRISTNIRD-------------NNDSSLFYSLRG----NFVGVVSDSTRVLG 104 (487)
T ss_dssp TSSEEEE-ECSCCSS-GGGHHHHSTTTHHHHHHHHHH-------------CGGGHHHHSGGG----GEEEEEECSSSBGG
T ss_pred CCeEEEE-ecCCCCC-HHHCeeeeCcchHHHHHHHHh-------------ChHHHhhhcccC----CEEEEEEcCceeee
Confidence 6777777 8888888 889999999999999999974 455555555554 48999999999999
Q ss_pred cCCCCC-ccccchhhhHHHHHHhcCCCCCCeeeEEeeccCCccccccCcCCCCcCCCCCCchhhhHhHHHHHHHHHHhCC
Q 040403 200 LGDLGV-QGIGIAVGKLDLYVAAAGINPQRVLPIMIDVGTTNEKLLKDPLYLGLQEHRLDGDEYVSVIDEFMEAIFTRWP 278 (623)
Q Consensus 200 LGDlG~-~GmgI~iGKl~LY~a~gGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~Rv~g~~Y~~~vdefv~av~~~~P 278 (623)
|||||+ +|||||+||++|||+||||| |||||||+||+| +++| +||||++|+.+||
T Consensus 105 LGDiG~~agmpImeGKl~Lyk~~aGId---~lPI~LD~gt~~--~~~d-------------------~defve~v~~~~P 160 (487)
T 3nv9_A 105 DGDVTPPGGLGVMEGKALLMKYLGGID---AVPICIDSKNKE--GKND-------------------PDAVIEFVQRIQH 160 (487)
T ss_dssp GBCCCGGGGHHHHHHHHHHHHHHHCCE---EEEEECCCBCTT--SCBC-------------------HHHHHHHHHHHGG
T ss_pred ccccccccCCchhhhHHHHHHhcCCCc---eeeeEEeCCCcc--ccCC-------------------HHHHHHHHHHhCC
Confidence 999999 58999999999999999999 999999999766 4677 5999999999999
Q ss_pred ce-eeecccCCCchHHHHHHHHhc--cCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHH
Q 040403 279 NV-IVQFEDFQSKWAFKLLQRYRY--KYRMFNDDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNA 355 (623)
Q Consensus 279 ~~-lIqfEDf~~~nAf~lL~ryr~--~~~~FNDDiQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~l 355 (623)
++ .||||||+++|||+||+|||+ +||||||||||||+|+|||||||+|++|++ |+||||||+|||+||+|||+|
T Consensus 161 ~fG~InlEDf~ap~af~il~ryr~~~~ipvFnDD~qGTA~V~lAgllnAlki~gk~---l~d~riV~~GAGaAGigia~l 237 (487)
T 3nv9_A 161 TFGAINLEDISQPNCYKILDVLRESCDIPVWHDDQQGTASVTLAGLLNALKLVKKD---IHECRMVFIGAGSSNTTCLRL 237 (487)
T ss_dssp GCSEEEECSCCTTHHHHHHHHHHHHCSSCEEETTTHHHHHHHHHHHHHHHHHHTCC---GGGCCEEEECCSHHHHHHHHH
T ss_pred CCCeecHhhcCCchHHHHHHHHHhhccCCccccccchHHHHHHHHHHHHHHHhCCC---hhhcEEEEECCCHHHHHHHHH
Confidence 97 999999999999999999999 689999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCCh-----hhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcE
Q 040403 356 ARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDP-----DAKPFARKVNEISRQGLWEGASLVEVVQQVKPDV 430 (623)
Q Consensus 356 l~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~-----~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptv 430 (623)
|+.+ |+++ +||||||++|||+++|++|++ +|.+||+.++. ....+|+|||+ ++||
T Consensus 238 l~~~-----G~~~-------~~i~l~D~~Gli~~~R~~l~~~~~~~~k~~~A~~~n~------~~~~~L~eav~--~adV 297 (487)
T 3nv9_A 238 IVTA-----GADP-------KKIVMFDSKGSLHNGREDIKKDTRFYRKWEICETTNP------SKFGSIAEACV--GADV 297 (487)
T ss_dssp HHHT-----TCCG-------GGEEEEETTEECCTTCHHHHHCGGGHHHHHHHHHSCT------TCCCSHHHHHT--TCSE
T ss_pred HHHc-----CCCc-------ccEEEEeccccccCCcchhhhhcccHHHHHHHHhccc------ccCCCHHHHHh--cCCE
Confidence 9863 9985 899999999999999987744 45667754322 35689999999 6799
Q ss_pred EEeccCC-CCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCccccCCCeeccCCCCc
Q 040403 431 LLGLSAV-GGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGSPFKDVDLGNGHIGHCNQGN 509 (623)
Q Consensus 431 LIG~S~~-~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~Grai~AtGsPF~pv~~~~G~~~~p~Q~N 509 (623)
|||+|++ ||+||+|||++| ++||||||||||| +||+||||+++ |+||||||| +++|||||
T Consensus 298 lIG~S~~~pg~ft~e~V~~M----a~~PIIFaLSNPt--pEi~pe~A~~~--G~aIvATGr-----------sd~PnQ~N 358 (487)
T 3nv9_A 298 LISLSTPGPGVVKAEWIKSM----GEKPIVFCCANPV--PEIYPYEAKEA--GAYIVATGR-----------GDFPNQVN 358 (487)
T ss_dssp EEECCCSSCCCCCHHHHHTS----CSSCEEEECCSSS--CSSCHHHHHHT--TCSEEEESC-----------TTSSSBCC
T ss_pred EEEecccCCCCCCHHHHHhh----cCCCEEEECCCCC--ccCCHHHHHHh--CCEEEEECC-----------CCCcccCc
Confidence 9999976 799999999999 7999999999999 69999999984 999999985 57899999
Q ss_pred cccchhHHHHHHHHcCCcccCHHHHHHHHHHHHcccCcccccCCccccCCCCcccchHHHHHHHHHHHHHcCccccccCc
Q 040403 510 NMYLFPGVGLGTLLSGSRIISDGMLQAAAECLAEYMTEEEVVKGKIYPSISSIRNITKEVAAAVVKEALEEDLAEGYRGV 589 (623)
Q Consensus 510 N~yiFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v~~~~l~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~GlA~~~~~~ 589 (623)
|+|+|||||||+++++|++|||+|+++||++||++++++++..++|||++++ ++||.+||.||+++|+++|+|+.
T Consensus 359 N~liFPGI~~Gal~~~A~~Itd~M~~AAA~ALA~~v~~~~l~~~~i~P~~~d-~~Vs~~VA~AVa~aA~~~GvA~~---- 433 (487)
T 3nv9_A 359 NSVGFPGILKGALIVRARKITDNMAIAASRALAEFAEKRGINPDNIIGTMDE-PGIFPKEAADVAMQAIKDGVARV---- 433 (487)
T ss_dssp GGGTHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHTCCBTTBCSCCTTC-TTHHHHHHHHHHHHHHHHTCCSC----
T ss_pred ceeEcchhhHHHHHcCCcccCHHHHHHHHHHHHhhCCcccCCCCceeCCccc-cchHHHHHHHHHHHHHHhCCCCC----
Confidence 9999999999999999999999999999999999999999999999999999 58999999999999999999983
Q ss_pred cchhcccCCHHHHHHHHHhCC
Q 040403 590 DARELQRFNQEELLEFVELNM 610 (623)
Q Consensus 590 ~~~~~p~~~~~dl~~~I~~~m 610 (623)
+..+++++.+++++.+
T Consensus 434 -----~~~~~~~~~~~~~~~~ 449 (487)
T 3nv9_A 434 -----TDLTWQQVYDIAEHDI 449 (487)
T ss_dssp -----CCCCHHHHHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHHH
Confidence 2134788888888765
No 5
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}
Probab=100.00 E-value=2.6e-113 Score=912.21 Aligned_cols=368 Identities=29% Similarity=0.462 Sum_probs=340.7
Q ss_pred hcccchhhhhhhccCccccCCcccchhhHHHHHHHhhhhcCCCcccccccChhhHHHHHhcCCCCCceEEEEecCceeec
Q 040403 120 HDRNETMYYKVLIANIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAEDRGEMKSMVYNWPAEQVDMIVVTDGSRILG 199 (623)
Q Consensus 120 ~~rNe~LFy~ll~~~~~e~lPivYTPtVg~ac~~~s~~~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILG 199 (623)
+.+-+.. +++.+++ .|+|||+||||||++|++|++ +|. +++ +|+.++++|+|||||+||||
T Consensus 19 ~gk~~~~-~~~~~~~-~~~l~i~YtP~V~~~c~~i~~---~p~----------~v~----~~t~~~~~V~VvTdG~~iLG 79 (398)
T 2a9f_A 19 GGKLEVQ-PKVDIKT-KHDLSIAYTPGVASVSSAIAK---DKT----------LAY----DLTTKKNTVAVISDGTAVLG 79 (398)
T ss_dssp TSSEEEE-ESSCCSS-HHHHHHHSTTTTHHHHHHHHH---CGG----------GHH----HHSGGGTEEEEEECSSSCTT
T ss_pred CCeEEEE-EecccCC-HHHCeEEECchHHHHHHHHHh---CHH----------HHH----HhcccCCEEEEEECCccccC
Confidence 5566554 9999999 899999999999999999985 444 433 78889999999999999999
Q ss_pred cCCCCCc-cccchhhhHHHHHHhcCCCCCCeeeEEeeccCCccccccCcCCCCcCCCCCCchhhhHhHHHHHHHHHHhCC
Q 040403 200 LGDLGVQ-GIGIAVGKLDLYVAAAGINPQRVLPIMIDVGTTNEKLLKDPLYLGLQEHRLDGDEYVSVIDEFMEAIFTRWP 278 (623)
Q Consensus 200 LGDlG~~-GmgI~iGKl~LY~a~gGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~Rv~g~~Y~~~vdefv~av~~~~P 278 (623)
|||+|++ ||+|++||+.||++||||| |+|||||+|| +||||++|+.+||
T Consensus 80 LGD~G~~aG~pI~eGK~~Lf~~~agid---~~pi~Ldv~~---------------------------~dEfv~~v~~~~p 129 (398)
T 2a9f_A 80 LGDIGPEAAMPVMEGKAALFKAFAGVD---AIPIVLDTKD---------------------------TEEIISIVKALAP 129 (398)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHSSCE---EEEEECCCCC---------------------------HHHHHHHHHHHGG
T ss_pred CCCcccccCCcchhCHHHHHHhccCCc---eeeeEeCCCC---------------------------HHHHHHHHHHcCC
Confidence 9999998 8999999999999999999 9999999995 7999999999999
Q ss_pred c-eeeecccCCCchHHHHHHHHhcc--CCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHH
Q 040403 279 N-VIVQFEDFQSKWAFKLLQRYRYK--YRMFNDDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNA 355 (623)
Q Consensus 279 ~-~lIqfEDf~~~nAf~lL~ryr~~--~~~FNDDiQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~l 355 (623)
. ++||||||+++|||++|+|||++ +|||||||||||+|++||++||+|++|++ ++|+||||+|||+||+|||++
T Consensus 130 ~F~~I~lED~~~p~~f~il~~~r~~~~ipvf~DDiqGTa~V~lAall~al~l~g~~---l~d~kVVi~GAGaAG~~iA~l 206 (398)
T 2a9f_A 130 TFGGINLEDISAPRCFEIEQRLIKECHIPVFHDDQHGTAIVVLAAIFNSLKLLKKS---LDEVSIVVNGGGSAGLSITRK 206 (398)
T ss_dssp GCSEEEECSCCTTHHHHHHHHHHHHCSSCEEEHHHHHHHHHHHHHHHHHHHTTTCC---TTSCEEEEECCSHHHHHHHHH
T ss_pred ceeEeccccCCChHHHHHHHHhhhcCCcceecchhhhHHHHHHHHHHHHHHHhCCC---CCccEEEEECCCHHHHHHHHH
Confidence 9 69999999999999999999997 99999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCC-CCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEec
Q 040403 356 ARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDR-ENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGL 434 (623)
Q Consensus 356 l~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r-~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~ 434 (623)
++.+ |+ ++||++|++|||+++| ++|+++|++||+.++. .....+|+|+|+ ++|+|||+
T Consensus 207 l~~~-----Ga---------~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~-----~~~~~~L~eav~--~ADV~IG~ 265 (398)
T 2a9f_A 207 LLAA-----GA---------TKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNR-----EFKSGTLEDALE--GADIFIGV 265 (398)
T ss_dssp HHHH-----TC---------CEEEEEETTEECCTTCCCSCCC---CHHHHHSC-----TTCCCSCSHHHH--TTCSEEEC
T ss_pred HHHc-----CC---------CeEEEEECCCcccCCccccchHHHHHHhhccCc-----ccchhhHHHHhc--cCCEEEec
Confidence 9986 84 7999999999999999 8899999999987544 234678999999 78999999
Q ss_pred cCCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCccccCCCeeccCCCCccccch
Q 040403 435 SAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGSPFKDVDLGNGHIGHCNQGNNMYLF 514 (623)
Q Consensus 435 S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~Grai~AtGsPF~pv~~~~G~~~~p~Q~NN~yiF 514 (623)
|+ ||+||+|+|++| +++|||||||||| +||+||||++| |+|||||| |+++||||||+|+|
T Consensus 266 Sa-pgl~T~EmVk~M----a~~pIIfalsNPt--~E~~pe~a~~~--g~~i~atG-----------rs~~p~Q~NN~~~F 325 (398)
T 2a9f_A 266 SA-PGVLKAEWISKM----AARPVIFAMANPI--PEIYPDEALEA--GAYIVGTG-----------RSDFPNQINNVLAF 325 (398)
T ss_dssp CS-TTCCCHHHHHTS----CSSCEEEECCSSS--CSSCHHHHHTT--TCSEEEES-----------CTTSSSBCCGGGTH
T ss_pred CC-CCCCCHHHHHhh----CCCCEEEECCCCC--ccCCHHHHHHh--CCeEEEeC-----------CCCCCCcCCceeEc
Confidence 97 999999999999 6999999999999 89999999999 99999998 47999999999999
Q ss_pred hHHHHHHHHcCCcccCHHHHHHHHHHHHcccCcccccCCccccCCCCcccchHHHHHHHHHHHHHcC
Q 040403 515 PGVGLGTLLSGSRIISDGMLQAAAECLAEYMTEEEVVKGKIYPSISSIRNITKEVAAAVVKEALEED 581 (623)
Q Consensus 515 PGiglG~~~~~a~~Itd~m~~aAA~aLA~~v~~~~l~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~G 581 (623)
||||+|+++++|++|||+|+++||++||++++++++..++|||++++ ++||.+||.||+++|++..
T Consensus 326 Pgi~~Gal~~~a~~I~d~m~~aAa~alA~~~~~~~~~~~~i~P~~~~-~~v~~~VA~aVa~~A~~~~ 391 (398)
T 2a9f_A 326 PGIFRGALDARAKTITVEMQIAAAKGIASLVPDDALSTTNIIPDAFK-EGVAEIVAKSVRSVVLKSE 391 (398)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHTCSSCSSCCSCCSCSSTT-HHHHHHHTTTTCCCCC---
T ss_pred chHHHHHHHcCCcCCCHHHHHHHHHHHHhcCCcccCCCCccCCCCCc-chhHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999 8999999999999998653
No 6
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*
Probab=100.00 E-value=7e-108 Score=869.27 Aligned_cols=360 Identities=29% Similarity=0.443 Sum_probs=335.8
Q ss_pred hcccchhhhhhhccCccccCCcccchhhHHHHHHHhhhhcCCCcccccccChhhHHHHHhcCCCCCceEEEEecCceeec
Q 040403 120 HDRNETMYYKVLIANIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAEDRGEMKSMVYNWPAEQVDMIVVTDGSRILG 199 (623)
Q Consensus 120 ~~rNe~LFy~ll~~~~~e~lPivYTPtVg~ac~~~s~~~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILG 199 (623)
+.+-+. ++++.++| .|+|||+||||||++|++|+ ++|.++| +|+.++++|+|||||+||||
T Consensus 23 ~gk~~~-~~~~~~~~-~~~l~i~YtP~V~~~c~~~~---~~p~~v~--------------~~t~~~~~V~VvTdg~~vLG 83 (388)
T 1vl6_A 23 KGKIRT-ALPVEKVD-RETLSLLYTPGVADVARACA---EDPEKTY--------------VYTSRWNTVAVVSDGSAVLG 83 (388)
T ss_dssp TCSCEE-ECSCSCCC-HHHHHHHSTTTHHHHHHHHH---HCGGGHH--------------HHSGGGGEEEEEECSTTBTT
T ss_pred CCeEEE-EEeeecCC-HHHCeEEECchHHHHHHHHH---hCHHHHH--------------hhcccCCeEEEEECCccccC
Confidence 455555 49999999 78899999999999999998 4555433 68889999999999999999
Q ss_pred cCCCCCc-cccchhhhHHHHHHhcCCCCCCeeeEEeeccCCccccccCcCCCCcCCCCCCchhhhHhHHHHHHHHHHhCC
Q 040403 200 LGDLGVQ-GIGIAVGKLDLYVAAAGINPQRVLPIMIDVGTTNEKLLKDPLYLGLQEHRLDGDEYVSVIDEFMEAIFTRWP 278 (623)
Q Consensus 200 LGDlG~~-GmgI~iGKl~LY~a~gGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~Rv~g~~Y~~~vdefv~av~~~~P 278 (623)
|||+|++ ||+|++||+.||++||||| ++|||||+|| +||||++|+++||
T Consensus 84 lGD~G~~ag~pI~egK~~Lf~~~agid---~~pi~ldv~~---------------------------~dE~v~~vk~~~p 133 (388)
T 1vl6_A 84 LGNIGPYGALPVMEGKAFLFKAFADID---AFPICLSESE---------------------------EEKIISIVKSLEP 133 (388)
T ss_dssp TBSCCHHHHHHHHHHHHHHHHHHHCCE---EEEEECSCCC---------------------------HHHHHHHHHHTGG
T ss_pred CCccccccCCcchhCHHHHHHhccCCc---eEeEEeCCCC---------------------------HHHHHHHHHHcCC
Confidence 9999998 8999999999999999999 9999999995 7999999999999
Q ss_pred c-eeeecccCCCchHHHHHHHHhcc--CCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHH
Q 040403 279 N-VIVQFEDFQSKWAFKLLQRYRYK--YRMFNDDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNA 355 (623)
Q Consensus 279 ~-~lIqfEDf~~~nAf~lL~ryr~~--~~~FNDDiQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~l 355 (623)
. ..||||||+++|||++|+|||++ ||||||||||||+|++||+++|+|++|++ ++++||||+|||+||+++|++
T Consensus 134 ~f~~i~lED~~~p~af~il~r~r~~~~Ipvf~DDiqGTasV~lAal~~A~~i~g~~---l~~~kVVv~GAGaAG~~iAkl 210 (388)
T 1vl6_A 134 SFGGINLEDIGAPKCFRILQRLSEEMNIPVFHDDQQGTAVVVSAAFLNALKLTEKK---IEEVKVVVNGIGAAGYNIVKF 210 (388)
T ss_dssp GCSEEEECSCCTTHHHHHHHHHHHHCSSCEEEHHHHHHHHHHHHHHHHHHHHHTCC---TTTCEEEEECCSHHHHHHHHH
T ss_pred cceEeCHhhcCCHHHHHHHHHhhhhcCcceeccccccHHHHHHHHHHHHHHHhCCC---CCCcEEEEECCCHHHHHHHHH
Confidence 9 69999999999999999999996 99999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCC--CChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEe
Q 040403 356 ARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDREN--IDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLG 433 (623)
Q Consensus 356 l~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~--l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG 433 (623)
|+.. | .++||++|++|||+.+|.+ |+++|++||+..+. .....+|+|+|+ ++|+|||
T Consensus 211 l~~~-----G---------~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~-----~~~~~~L~eav~--~ADVlIG 269 (388)
T 1vl6_A 211 LLDL-----G---------VKNVVAVDRKGILNENDPETCLNEYHLEIARITNP-----ERLSGDLETALE--GADFFIG 269 (388)
T ss_dssp HHHH-----T---------CCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCT-----TCCCSCHHHHHT--TCSEEEE
T ss_pred HHhC-----C---------CCeEEEEECCCcccCCCcccccCHHHHHHHHhhhc-----cCchhhHHHHHc--cCCEEEE
Confidence 9985 8 3799999999999999987 99999999976433 234678999999 7999999
Q ss_pred ccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCccccCCCeeccCCCCccccc
Q 040403 434 LSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGSPFKDVDLGNGHIGHCNQGNNMYL 513 (623)
Q Consensus 434 ~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~Grai~AtGsPF~pv~~~~G~~~~p~Q~NN~yi 513 (623)
+|+ ||+||+|+|+.| .++||||+||||| |||+||||++| |+||||||+ +++|||+||+|+
T Consensus 270 ~Sa-p~l~t~emVk~M----a~~pIIfalSNPt--~E~~p~~a~~~--g~~i~atGr-----------~~~p~Q~NN~~~ 329 (388)
T 1vl6_A 270 VSR-GNILKPEWIKKM----SRKPVIFALANPV--PEIDPELAREA--GAFIVATGR-----------SDHPNQVNNLLA 329 (388)
T ss_dssp CSC-SSCSCHHHHTTS----CSSCEEEECCSSS--CSSCHHHHHHT--TCSEEEESC-----------TTSSSBCCGGGT
T ss_pred eCC-CCccCHHHHHhc----CCCCEEEEcCCCC--CCCCHHHHHHh--cCeEEEeCC-----------CCCCCcCCceeE
Confidence 998 899999999999 5899999999999 89999999999 999999984 799999999999
Q ss_pred hhHHHHHHHHcCCcccCHHHHHHHHHHHHcccCcccccCCccccCCCCcccchHHHHHHHHHHH
Q 040403 514 FPGVGLGTLLSGSRIISDGMLQAAAECLAEYMTEEEVVKGKIYPSISSIRNITKEVAAAVVKEA 577 (623)
Q Consensus 514 FPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v~~~~l~~g~l~P~~~~ir~vs~~VA~aVa~~A 577 (623)
|||||+|+++++|+ |||+|+++||++||+++ ++..++|||++++ ++||.+||.||+++|
T Consensus 330 FPgi~~Gal~~~a~-i~~~m~~aAa~alA~~~---~~~~~~i~P~~~~-~~v~~~vA~aVa~~A 388 (388)
T 1vl6_A 330 FPGIMKGAVEKRSK-ITKNMLLSAVEAIARSC---EPEPERIIPEAFD-MKVHLNVYTAVKGSA 388 (388)
T ss_dssp HHHHHHHHHHHCSC-CCHHHHHHHHHHHHHTS---CCBTTBSSCCTTC-HHHHHHHHHHHHHCC
T ss_pred cchHhHHHHhcCCc-cCHHHHHHHHHHHHhhh---ccCCCcccCCCCc-chhhHHHHHHHHhhC
Confidence 99999999999999 99999999999999999 6788999999999 899999999999865
No 7
>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*
Probab=100.00 E-value=1.7e-86 Score=716.83 Aligned_cols=387 Identities=30% Similarity=0.439 Sum_probs=352.7
Q ss_pred hhhhhhccCccccCCcccchhhHHHHHHHhhhhcCCCcccccccChhhHHHHHhcCCCCCceEEEEecCceeeccCCCCC
Q 040403 126 MYYKVLIANIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAEDRGEMKSMVYNWPAEQVDMIVVTDGSRILGLGDLGV 205 (623)
Q Consensus 126 LFy~ll~~~~~e~lPivYTPtVg~ac~~~s~~~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG~ 205 (623)
.++++.+++ .|+|||+||||||++|++|++ |++++++ |+.++++++|||||+|||||||+|.
T Consensus 22 ~~~~~~~~~-~~~l~~~YtP~v~~~c~~~~~-------------~~~~~~~----~~~~~~~v~vvtdgt~ilGlG~iG~ 83 (439)
T 2dvm_A 22 VIPKVSLES-REELTLAYTPGVAEPCKEIAR-------------DPGKVYE----YTSKGNLVAVVSDGSRILGLGNIGP 83 (439)
T ss_dssp EEESSCCCS-HHHHHHHSTTTTHHHHHHHHH-------------CGGGHHH----HSSGGGEEEEEECSTTBTTTBCCCH
T ss_pred EEEeeccCC-HHHCeeEECchhHHHHHHHHH-------------CHHHHHh----hcccCcEEEEEECCCeEecccceec
Confidence 459999999 899999999999999999985 6666554 8888999999999999999999999
Q ss_pred c-cccchhhhHHHHHHhcCCCCCCeeeEEeeccCCccccccCcCCCCcCCCCCCchhhhHhHHHHHHHHHHhCCc-eeee
Q 040403 206 Q-GIGIAVGKLDLYVAAAGINPQRVLPIMIDVGTTNEKLLKDPLYLGLQEHRLDGDEYVSVIDEFMEAIFTRWPN-VIVQ 283 (623)
Q Consensus 206 ~-GmgI~iGKl~LY~a~gGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~Rv~g~~Y~~~vdefv~av~~~~P~-~lIq 283 (623)
+ ++|+++||+.||++||||| ++|++||+ +| +|+|+++|+.++|+ .+||
T Consensus 84 hS~sPvmh~ka~lf~~~gGid---~~yi~ldv--------~d-------------------~de~~~~v~~l~~~f~Gin 133 (439)
T 2dvm_A 84 LAGLPVMEGKALLFKRFGGVD---AFPIMIKE--------QE-------------------PNKFIDIVKAIAPTFGGIN 133 (439)
T ss_dssp HHHHHHHHHHHHHHHHHHCCE---EEEEECSC--------CS-------------------HHHHHHHHHHTGGGCSEEE
T ss_pred cccCHHHHHHHHHHHHhCCCC---Ceeeeeec--------CC-------------------HHHHHHHHHHhCccCcEEE
Confidence 7 7999999999999999999 99999999 23 69999999999999 5999
Q ss_pred cccCCCchHHHHHHHHhc--cCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHH
Q 040403 284 FEDFQSKWAFKLLQRYRY--KYRMFNDDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMA 361 (623)
Q Consensus 284 fEDf~~~nAf~lL~ryr~--~~~~FNDDiQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~ 361 (623)
||||+.||||++|++|++ ++||||||+||||.+.++|+++|++.+|++ ++++|+||+|||+||.+|+.+|.+.
T Consensus 134 vED~T~P~k~~il~~l~~avNt~vf~dD~~gtgntd~aG~~~AL~~~g~~---l~~~rvlvlGAGgAg~aia~~L~~~-- 208 (439)
T 2dvm_A 134 LEDIASPKCFYILERLREELDIPVFHDDQQGTAAVVLAGLLNALKVVGKK---ISEITLALFGAGAAGFATLRILTEA-- 208 (439)
T ss_dssp ECSCCTTHHHHHHHHHHHHCSSCEEEHHHHHHHHHHHHHHHHHHHHHTCC---TTTCCEEEECCSHHHHHHHHHHHHT--
T ss_pred EEeCCCchHHHHHHHHHHhcCEEEEeCCCcEEeehHHHHHHHHHHHhCCC---ccCCEEEEECccHHHHHHHHHHHHc--
Confidence 999999999999999998 499999999999999999999999999999 9999999999999999999999875
Q ss_pred HhcCCCcchhhhccCeEEEEc----cCCcccCCCCC---CChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEec
Q 040403 362 RMLGNNESAFDSARSQFWVVD----AKGLITEDREN---IDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGL 434 (623)
Q Consensus 362 ~~~Gls~~~~eeA~~~i~lvD----~~GLi~~~r~~---l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~ 434 (623)
|+++ ++||++| ++||++++ .+ +.+++++|++..+. .....+|.|+++ ++|+|||+
T Consensus 209 ---G~~~-------~~I~vvd~~~~R~G~~~~a-~~~~~L~~~~~~~a~~~~~-----~~~~~~L~e~l~--~aDVlIna 270 (439)
T 2dvm_A 209 ---GVKP-------ENVRVVELVNGKPRILTSD-LDLEKLFPYRGWLLKKTNG-----ENIEGGPQEALK--DADVLISF 270 (439)
T ss_dssp ---TCCG-------GGEEEEEEETTEEEECCTT-SCHHHHSTTCHHHHTTSCT-----TCCCSSHHHHHT--TCSEEEEC
T ss_pred ---CCCc-------CeEEEEEccCCCcCccccc-cchhHHHHHHHHHhhcccc-----ccccccHHHHhc--cCCEEEEc
Confidence 9764 7899999 99999887 45 77888888853211 113467999998 79999999
Q ss_pred cCCC-CCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCccccCCCeeccCCCCccccc
Q 040403 435 SAVG-GLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGSPFKDVDLGNGHIGHCNQGNNMYL 513 (623)
Q Consensus 435 S~~~-g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~Grai~AtGsPF~pv~~~~G~~~~p~Q~NN~yi 513 (623)
|+.+ |.|++++++.| .++||||+||||+ +||++++|.+| |++++|||+ ++.|+|+||+|+
T Consensus 271 T~~~~G~~~~e~v~~m----~~~~iVfDLynP~--~t~~~~~A~~~--G~~ivatG~-----------~ml~~Q~nn~~~ 331 (439)
T 2dvm_A 271 TRPGPGVIKPQWIEKM----NEDAIVFPLANPV--PEILPEEAKKA--GARIVATGR-----------SDYPNQINNLLG 331 (439)
T ss_dssp SCCCSSSSCHHHHTTS----CTTCEEEECCSSS--CSSCHHHHHHH--TCSEECBSC-----------SSSSSBCCGGGT
T ss_pred CCCccCCCChHHHHhc----CCCCEEEECCCCC--CcchHHHHHHc--CCeEEcCCC-----------chhHHHHHHHhc
Confidence 9875 99999999999 6899999999999 89999999999 999999984 789999999999
Q ss_pred hhHHHHHHHHcCCcccCHHHHHHHHHHHHcccCcccccCCccccCCCCcccchHHHHHHHHHHHHHcCccccccCccchh
Q 040403 514 FPGVGLGTLLSGSRIISDGMLQAAAECLAEYMTEEEVVKGKIYPSISSIRNITKEVAAAVVKEALEEDLAEGYRGVDARE 593 (623)
Q Consensus 514 FPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v~~~~l~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~GlA~~~~~~~~~~ 593 (623)
|||||+|+++++|++|||+|+++||++||++++++ ..++|||++++ ++||.+||.||+++|+++|+|+.
T Consensus 332 FPGi~~g~l~~~a~~i~~~m~~aaa~ala~~~~~~--~~~~i~P~~~~-~~v~~~va~av~~~a~~~g~a~~-------- 400 (439)
T 2dvm_A 332 FPGIFRGALDVRARTITDSMIIAAAKAIASIVEEP--SEENIIPSPLN-PIVYAREARAVAEEAMKEGVART-------- 400 (439)
T ss_dssp HHHHHHHHHHTTCSCCCHHHHHHHHHHHHHTSSSC--BTTBCSCCTTC-HHHHHHHHHHHHHHHHHHTCCSS--------
T ss_pred ccCchHHHHhcCCCCCCHHHHHHHHHHHHhhCccc--cCCccCCCccc-chhhHHHHHHHHHHHHHhCCCCC--------
Confidence 99999999999999999999999999999999876 78999999999 89999999999999999999982
Q ss_pred cccCCHHHHHHHHHhCCcccCC
Q 040403 594 LQRFNQEELLEFVELNMWHPEY 615 (623)
Q Consensus 594 ~p~~~~~dl~~~I~~~mw~P~Y 615 (623)
.+ .|+|+.+|+++.||.+.|
T Consensus 401 ~~--~~~~~~~~~~~~~~~~~~ 420 (439)
T 2dvm_A 401 KV--KGEWVEEHTIRLIEFYEN 420 (439)
T ss_dssp CC--CHHHHHHHHHHHHHHHHH
T ss_pred CC--ChHHHHHHHHHHhhhhHH
Confidence 22 388999999999998765
No 8
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Probab=98.92 E-value=9.1e-09 Score=111.47 Aligned_cols=165 Identities=15% Similarity=0.169 Sum_probs=120.0
Q ss_pred HHHHHHHHhCCceeeecccCCC--chH-HHHHHHHh---ccCCcc----------ccCcchhHHHHHHHHHHHHHHhCCC
Q 040403 268 EFMEAIFTRWPNVIVQFEDFQS--KWA-FKLLQRYR---YKYRMF----------NDDVQGTAGVAVAGLLGAVRAQGRS 331 (623)
Q Consensus 268 efv~av~~~~P~~lIqfEDf~~--~nA-f~lL~ryr---~~~~~F----------NDDiQGTaaV~lAgll~A~r~~g~~ 331 (623)
.++..+...||+.+=++--++- ..- .|+-+..+ -.+|+| .|++.||+.+++.+++. .++..
T Consensus 132 dl~~~~h~~~~~~~~~i~G~~EeTttGv~rL~~~~~~g~L~iPVinvndsvtk~~~Dn~~Gt~~slldgi~r---atg~~ 208 (436)
T 3h9u_A 132 DLTNYVLDECKELDGKIYGVSEETTTGVKNLYKRLQRGKLTIPAMNVNDSVTKSKFDNLYGCRESLVDGIKR---ATDVM 208 (436)
T ss_dssp HHHHHHHHHC-CCTTTCCCEEECSHHHHHHHHHHHHHTCCCSCEEECTTSHHHHTTHHHHHHHHHHHHHHHH---HHCCC
T ss_pred HHHHHHHHHhHHHHhhccceeeccCcChHHHHHHHHcCCCCCceEeechhhhhhhhhccccchHHHHHHHHH---hcCCc
Confidence 3555666777765322211111 122 22322222 249999 89999999999999964 56888
Q ss_pred CCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhccc
Q 040403 332 MIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQ 411 (623)
Q Consensus 332 ~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~ 411 (623)
|.+.+|+|+|.|..|.++|+.+... |. +++++|++ +.+...|.. .
T Consensus 209 ---L~GktVgIiG~G~IG~~vA~~Lka~-----Ga----------~Viv~D~~-----------p~~a~~A~~--~---- 253 (436)
T 3h9u_A 209 ---IAGKTACVCGYGDVGKGCAAALRGF-----GA----------RVVVTEVD-----------PINALQAAM--E---- 253 (436)
T ss_dssp ---CTTCEEEEECCSHHHHHHHHHHHHT-----TC----------EEEEECSC-----------HHHHHHHHH--T----
T ss_pred ---ccCCEEEEEeeCHHHHHHHHHHHHC-----CC----------EEEEECCC-----------hhhhHHHHH--h----
Confidence 9999999999999999999998764 73 58888873 223333321 1
Q ss_pred ccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcc
Q 040403 412 GLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSI 479 (623)
Q Consensus 412 ~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~w 479 (623)
.....+|.|+++ +.|++|.+++..+.++++.++.| .+..||+-.|++. .|+.++++.+.
T Consensus 254 -G~~~~sL~eal~--~ADVVilt~gt~~iI~~e~l~~M----K~gAIVINvgRg~--vEID~~~L~~~ 312 (436)
T 3h9u_A 254 -GYQVLLVEDVVE--EAHIFVTTTGNDDIITSEHFPRM----RDDAIVCNIGHFD--TEIQVAWLKAN 312 (436)
T ss_dssp -TCEECCHHHHTT--TCSEEEECSSCSCSBCTTTGGGC----CTTEEEEECSSSG--GGBCHHHHHHH
T ss_pred -CCeecCHHHHHh--hCCEEEECCCCcCccCHHHHhhc----CCCcEEEEeCCCC--CccCHHHHHhh
Confidence 123458999999 89999998888899999999999 7889999999998 89999887653
No 9
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*
Probab=98.88 E-value=1.9e-08 Score=108.96 Aligned_cols=128 Identities=19% Similarity=0.260 Sum_probs=104.6
Q ss_pred cCCcc----------ccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchh
Q 040403 302 KYRMF----------NDDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAF 371 (623)
Q Consensus 302 ~~~~F----------NDDiQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~ 371 (623)
.+|+| .|++.||+-++++|+..+ ++.. |.+.+++|+|+|..|.++|+.+... |.
T Consensus 181 ~~Pvi~vnds~tK~~fDn~yGt~~s~~~gi~ra---t~~~---L~GktV~ViG~G~IGk~vA~~Lra~-----Ga----- 244 (435)
T 3gvp_A 181 CVPAMNVNDSVTKQKFDNLYCCRESILDGLKRT---TDMM---FGGKQVVVCGYGEVGKGCCAALKAM-----GS----- 244 (435)
T ss_dssp CSCEEECTTCHHHHHHHTHHHHHHHHHHHHHHH---HCCC---CTTCEEEEECCSHHHHHHHHHHHHT-----TC-----
T ss_pred CCCEEEecchhhhhhhhhhhhhHHHHHHHHHHh---hCce---ecCCEEEEEeeCHHHHHHHHHHHHC-----CC-----
Confidence 49999 899999999999999765 6888 9999999999999999999988764 73
Q ss_pred hhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHccc
Q 040403 372 DSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRG 451 (623)
Q Consensus 372 eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a 451 (623)
+++.+|++ +.+...|.. + .....+|.|+++ +.|++|.+++..++++++.++.|
T Consensus 245 -----~Viv~D~d-----------p~ra~~A~~--~-----G~~v~~Leeal~--~ADIVi~atgt~~lI~~e~l~~M-- 297 (435)
T 3gvp_A 245 -----IVYVTEID-----------PICALQACM--D-----GFRLVKLNEVIR--QVDIVITCTGNKNVVTREHLDRM-- 297 (435)
T ss_dssp -----EEEEECSC-----------HHHHHHHHH--T-----TCEECCHHHHTT--TCSEEEECSSCSCSBCHHHHHHS--
T ss_pred -----EEEEEeCC-----------hhhhHHHHH--c-----CCEeccHHHHHh--cCCEEEECCCCcccCCHHHHHhc--
Confidence 58888874 222233321 1 122457999999 89999999988999999999999
Q ss_pred CCCCCCEEEecCCCCCCCCCCHHHH
Q 040403 452 STSTRPAIFAMSNPTNNAECTPEEA 476 (623)
Q Consensus 452 ~~~erPIIFaLSNPt~~~E~tpeda 476 (623)
.+..||+-.+++. .|+..+..
T Consensus 298 --K~gailINvgrg~--~EId~~~L 318 (435)
T 3gvp_A 298 --KNSCIVCNMGHSN--TEIDVASL 318 (435)
T ss_dssp --CTTEEEEECSSTT--TTBTGGGG
T ss_pred --CCCcEEEEecCCC--ccCCHHHH
Confidence 6789999999997 78887665
No 10
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*
Probab=98.27 E-value=3.5e-06 Score=89.88 Aligned_cols=227 Identities=19% Similarity=0.309 Sum_probs=129.0
Q ss_pred ChhhHHHHHhcCCCCCceEEEEecCceeeccCCCCCc--cccchhhhHHHHHHhcCCCCCCeeeEEeeccCCccccccCc
Q 040403 170 DRGEMKSMVYNWPAEQVDMIVVTDGSRILGLGDLGVQ--GIGIAVGKLDLYVAAAGINPQRVLPIMIDVGTTNEKLLKDP 247 (623)
Q Consensus 170 d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG~~--GmgI~iGKl~LY~a~gGI~P~~~lPI~LDvGTnN~~LL~DP 247 (623)
++..++.+... ..+|+|.++++..+|++|.+.. |+.|..+ ..+|. | +++|.+. +|
T Consensus 26 tP~~v~~L~~~----G~~V~ve~~ag~~~gf~d~~y~~aGa~i~~~-~~~~~-a---------diil~vk--------~p 82 (401)
T 1x13_A 26 TPKTVEQLLKL----GFTVAVESGAGQLASFDDKAFVQAGAEIVEG-NSVWQ-S---------EIILKVN--------AP 82 (401)
T ss_dssp CHHHHHHHHHT----TCEEEEETTTTGGGTCCHHHHHHHTCEEECG-GGGGS-S---------SEEECSS--------CC
T ss_pred CHHHHHHHHHC----CCEEEEEECCCcccCCChHHHHHCCCEEecc-HHHhc-C---------CeEEEeC--------CC
Confidence 34455555553 3489999999999999998876 6777767 55655 1 5677653 22
Q ss_pred CCCCcCCCCCCchhhhHhHHHHHHHHHHhCCc-eeeecccCCCchHHHHHHHHhc-cCCccc-cCc------c----hhH
Q 040403 248 LYLGLQEHRLDGDEYVSVIDEFMEAIFTRWPN-VIVQFEDFQSKWAFKLLQRYRY-KYRMFN-DDV------Q----GTA 314 (623)
Q Consensus 248 lYlG~r~~Rv~g~~Y~~~vdefv~av~~~~P~-~lIqfEDf~~~nAf~lL~ryr~-~~~~FN-DDi------Q----GTa 314 (623)
.++.++. .-|+ .+|-|=..+.. -.++++.++ .+.+|+ +.+ | .+.
T Consensus 83 ------------------~~~~i~~---l~~~~~li~~~~~~~d--~~~~~al~~~gI~v~~~e~v~~~~~a~~l~~l~~ 139 (401)
T 1x13_A 83 ------------------LDDEIAL---LNPGTTLVSFIWPAQN--PELMQKLAERNVTVMAMDSVPRISRAQSLDALSS 139 (401)
T ss_dssp ------------------CHHHHTT---CCTTCEEEECCCGGGC--HHHHHHHHHTTCEEEEGGGCCCSGGGGGGCHHHH
T ss_pred ------------------CHHHHHH---hcCCCcEEEEecCCCC--HHHHHHHHHCCCEEEEeehhhhhhhhcccchHHH
Confidence 1233322 2244 24433333221 224455554 477773 222 2 455
Q ss_pred HHHHHHHHHHHHH----hCCCC-------CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEcc
Q 040403 315 GVAVAGLLGAVRA----QGRSM-------IDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDA 383 (623)
Q Consensus 315 aV~lAgll~A~r~----~g~~~-------~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~ 383 (623)
...+|| .+|++. .++.. ..+...+|+|+|+|.+|.++++.+... |. +++++|+
T Consensus 140 ~a~~ag-~~av~~~~~~~~~~~~~~~~~~g~l~g~~V~ViGaG~iG~~aa~~a~~~-----Ga----------~V~v~D~ 203 (401)
T 1x13_A 140 MANIAG-YRAIVEAAHEFGRFFTGQITAAGKVPPAKVMVIGAGVAGLAAIGAANSL-----GA----------IVRAFDT 203 (401)
T ss_dssp HHHHHH-HHHHHHHHHHCSSCSSCEEETTEEECCCEEEEECCSHHHHHHHHHHHHT-----TC----------EEEEECS
T ss_pred HHHHHH-HHHHHHHHHhcccccCCceeeccCcCCCEEEEECCCHHHHHHHHHHHHC-----CC----------EEEEEcC
Confidence 555555 333333 22210 015678999999999999999887764 73 4888888
Q ss_pred CCcccCCCCCC-------C-----hhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCC-----CCCCCHHHH
Q 040403 384 KGLITEDRENI-------D-----PDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAV-----GGLFSKEVL 446 (623)
Q Consensus 384 ~GLi~~~r~~l-------~-----~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~-----~g~Ft~evv 446 (623)
+.-.......+ + ..+..|++...+ .+......+|.+.++ +.|++|++... +.++|++.+
T Consensus 204 ~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~l~e~~~--~aDvVI~~~~~pg~~ap~li~~~~l 279 (401)
T 1x13_A 204 RPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSD--AFIKAEMELFAAQAK--EVDIIVTTALIPGKPAPKLITREMV 279 (401)
T ss_dssp CGGGHHHHHHTTCEECCC--------CCHHHHHHSH--HHHHHHHHHHHHHHH--HCSEEEECCCCTTSCCCCCBCHHHH
T ss_pred CHHHHHHHHHcCCEEEEecccccccccccchhhccH--HHHHHHHHHHHHHhC--CCCEEEECCccCCCCCCeeeCHHHH
Confidence 64321000000 0 000112211000 000000113778887 79999998544 367899999
Q ss_pred HHcccCCCCCCEEEecCCCC
Q 040403 447 EAMRGSTSTRPAIFAMSNPT 466 (623)
Q Consensus 447 ~~M~a~~~erPIIFaLSNPt 466 (623)
+.| .+..+|+-+|+|.
T Consensus 280 ~~m----k~g~vIVdva~~~ 295 (401)
T 1x13_A 280 DSM----KAGSVIVDLAAQN 295 (401)
T ss_dssp HTS----CTTCEEEETTGGG
T ss_pred hcC----CCCcEEEEEcCCC
Confidence 999 5788999999873
No 11
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Probab=98.03 E-value=4.6e-05 Score=83.12 Aligned_cols=129 Identities=16% Similarity=0.184 Sum_probs=99.3
Q ss_pred cCCcc----------ccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchh
Q 040403 302 KYRMF----------NDDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAF 371 (623)
Q Consensus 302 ~~~~F----------NDDiQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~ 371 (623)
.+|+| .|...||+-.++.|+. |.+|.. |.+.+++|+|.|..|.++|+.+... |+
T Consensus 208 ~~PvinVnds~tK~~fDn~yG~~eslvdgI~---Ratg~~---L~GKTVgVIG~G~IGr~vA~~lraf-----Ga----- 271 (464)
T 3n58_A 208 PFPAINVNDSVTKSKFDNKYGCKESLVDGIR---RGTDVM---MAGKVAVVCGYGDVGKGSAQSLAGA-----GA----- 271 (464)
T ss_dssp CSCEEECTTSHHHHTTHHHHHHHHHHHHHHH---HHHCCC---CTTCEEEEECCSHHHHHHHHHHHHT-----TC-----
T ss_pred CCCEEeeccHhhhhhhhhhhcchHHHHHHHH---HhcCCc---ccCCEEEEECcCHHHHHHHHHHHHC-----CC-----
Confidence 48998 6778999999988885 567888 9999999999999999999988764 73
Q ss_pred hhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHccc
Q 040403 372 DSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRG 451 (623)
Q Consensus 372 eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a 451 (623)
+++.+|++ +.....|. .+ .-...+|.|+++ +.|+++.+++..++++++.++.|
T Consensus 272 -----~Viv~d~d-----------p~~a~~A~--~~-----G~~vv~LeElL~--~ADIVv~atgt~~lI~~e~l~~M-- 324 (464)
T 3n58_A 272 -----RVKVTEVD-----------PICALQAA--MD-----GFEVVTLDDAAS--TADIVVTTTGNKDVITIDHMRKM-- 324 (464)
T ss_dssp -----EEEEECSS-----------HHHHHHHH--HT-----TCEECCHHHHGG--GCSEEEECCSSSSSBCHHHHHHS--
T ss_pred -----EEEEEeCC-----------cchhhHHH--hc-----CceeccHHHHHh--hCCEEEECCCCccccCHHHHhcC--
Confidence 57777763 22222221 11 112357999999 89999999888899999999999
Q ss_pred CCCCCCEEEecCCCCCCCCCCHHHHh
Q 040403 452 STSTRPAIFAMSNPTNNAECTPEEAF 477 (623)
Q Consensus 452 ~~~erPIIFaLSNPt~~~E~tpeda~ 477 (623)
.+..||.-.++.. .|+..+...
T Consensus 325 --K~GAILINvGRgd--vEID~~aL~ 346 (464)
T 3n58_A 325 --KDMCIVGNIGHFD--NEIQVAALR 346 (464)
T ss_dssp --CTTEEEEECSSST--TTBTCGGGT
T ss_pred --CCCeEEEEcCCCC--cccCHHHHH
Confidence 7888988888876 566655443
No 12
>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*
Probab=98.01 E-value=3.4e-05 Score=84.80 Aligned_cols=131 Identities=19% Similarity=0.234 Sum_probs=101.8
Q ss_pred cCCcc----------ccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchh
Q 040403 302 KYRMF----------NDDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAF 371 (623)
Q Consensus 302 ~~~~F----------NDDiQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~ 371 (623)
.+|+| .|+++||+..++.++. |.++.. |.+.+++|.|+|..|.+||+.+... |.
T Consensus 226 ~iPvinvnDs~tK~~fDn~yGt~~sl~dgi~---r~tg~~---L~GKtVvVtGaGgIG~aiA~~Laa~-----GA----- 289 (488)
T 3ond_A 226 LFPAINVNDSVTKSKFDNLYGCRHSLPDGLM---RATDVM---IAGKVAVVAGYGDVGKGCAAALKQA-----GA----- 289 (488)
T ss_dssp CSCEEECTTSHHHHTTHHHHHHHHHHHHHHH---HHHCCC---CTTCEEEEECCSHHHHHHHHHHHHT-----TC-----
T ss_pred CCceecccchhhhhHhhhhccccHHHHHHHH---HHcCCc---ccCCEEEEECCCHHHHHHHHHHHHC-----CC-----
Confidence 48999 6889999999999886 788888 9999999999998888888877764 72
Q ss_pred hhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHccc
Q 040403 372 DSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRG 451 (623)
Q Consensus 372 eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a 451 (623)
+++++|++ +.+...+.. . .-...++.++++ ..|+++-+++..++++.+.++.|
T Consensus 290 -----~Viv~D~~-----------~~~a~~Aa~--~-----g~dv~~lee~~~--~aDvVi~atG~~~vl~~e~l~~m-- 342 (488)
T 3ond_A 290 -----RVIVTEID-----------PICALQATM--E-----GLQVLTLEDVVS--EADIFVTTTGNKDIIMLDHMKKM-- 342 (488)
T ss_dssp -----EEEEECSC-----------HHHHHHHHH--T-----TCEECCGGGTTT--TCSEEEECSSCSCSBCHHHHTTS--
T ss_pred -----EEEEEcCC-----------HHHHHHHHH--h-----CCccCCHHHHHH--hcCEEEeCCCChhhhhHHHHHhc--
Confidence 68888874 222222211 1 112345777777 79999999988899999999999
Q ss_pred CCCCCCEEEecCCCCCCCCCCHHHHhcc
Q 040403 452 STSTRPAIFAMSNPTNNAECTPEEAFSI 479 (623)
Q Consensus 452 ~~~erPIIFaLSNPt~~~E~tpeda~~w 479 (623)
.+..||+-.+++. .|...++.-.|
T Consensus 343 --k~gaiVvNaG~~~--~Ei~~~~l~~~ 366 (488)
T 3ond_A 343 --KNNAIVCNIGHFD--NEIDMLGLETH 366 (488)
T ss_dssp --CTTEEEEESSSTT--TTBTHHHHHTS
T ss_pred --CCCeEEEEcCCCC--cccchHHHHHh
Confidence 6788999999985 78888776665
No 13
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Probab=97.12 E-value=0.0018 Score=69.65 Aligned_cols=114 Identities=25% Similarity=0.395 Sum_probs=72.2
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCC-------CC-------hhhHH
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDREN-------ID-------PDAKP 400 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~-------l~-------~~~~~ 400 (623)
+...||+|+|+|.+|.++|+.+... |. +++++|++.-..+...+ +. ..+..
T Consensus 188 v~~~kV~ViG~G~iG~~aa~~a~~l-----Ga----------~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ 252 (405)
T 4dio_A 188 VPAAKIFVMGAGVAGLQAIATARRL-----GA----------VVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGG 252 (405)
T ss_dssp ECCCEEEEECCSHHHHHHHHHHHHT-----TC----------EEEEECSSTTHHHHHHHTTCEECCCCC-----------
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHC-----CC----------EEEEEcCCHHHHHHHHHcCCceeecccccccccccccc
Confidence 5689999999999999999988764 72 58899987532110000 00 00111
Q ss_pred hHHH-hhhhcccccCCCCCHHHHHhhcCCcEEEeccC-----CCCCCCHHHHHHcccCCCCCCEEEecCC-CCCCCCCC
Q 040403 401 FARK-VNEISRQGLWEGASLVEVVQQVKPDVLLGLSA-----VGGLFSKEVLEAMRGSTSTRPAIFAMSN-PTNNAECT 472 (623)
Q Consensus 401 fA~~-~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~-----~~g~Ft~evv~~M~a~~~erPIIFaLSN-Pt~~~E~t 472 (623)
|++. ++++. .....+|.++++ +.|++|++.. .+.+||+++++.| .+..||+-+|- |-...|+|
T Consensus 253 ya~e~s~~~~---~~~~~~l~e~l~--~aDVVI~tvlipg~~ap~Lvt~emv~~M----k~GsVIVDvA~d~GG~~e~t 322 (405)
T 4dio_A 253 YAKEMSGEYQ---VKQAALVAEHIA--KQDIVITTALIPGRPAPRLVTREMLDSM----KPGSVVVDLAVERGGNIEGA 322 (405)
T ss_dssp ------CHHH---HHHHHHHHHHHH--TCSEEEECCCCSSSCCCCCBCHHHHTTS----CTTCEEEETTGGGTCSBTTC
T ss_pred hhhhcchhhh---hhhHhHHHHHhc--CCCEEEECCcCCCCCCCEEecHHHHhcC----CCCCEEEEEeCCCCCCcccc
Confidence 3320 00000 011246999999 9999999853 3467999999999 78999999985 33335554
No 14
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=96.85 E-value=0.013 Score=59.31 Aligned_cols=141 Identities=13% Similarity=0.129 Sum_probs=93.0
Q ss_pred HHHHHHHhc-cCCccccC------cchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcC
Q 040403 293 FKLLQRYRY-KYRMFNDD------VQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLG 365 (623)
Q Consensus 293 f~lL~ryr~-~~~~FNDD------iQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~G 365 (623)
..+++..++ .+.++|-. .-.+-+|+=.++..++...+.. +.+.+++|+|+|..|..+|+.+... |
T Consensus 107 id~~~~~~~~gi~v~~~~~~~~~~~~~~~svae~a~~~~l~~~~~~---l~g~~v~IiG~G~iG~~~a~~l~~~-----G 178 (293)
T 3d4o_A 107 TYLNQCMKKTNRTLVKLMERDDIAIYNSIPTAEGTIMMAIQHTDFT---IHGANVAVLGLGRVGMSVARKFAAL-----G 178 (293)
T ss_dssp HHHHHHHHHHTCEEEEGGGCHHHHHHHHHHHHHHHHHHHHHHCSSC---STTCEEEEECCSHHHHHHHHHHHHT-----T
T ss_pred HHHHHHHHHcCCeEEEecCCceeeeeccHhHHHHHHHHHHHhcCCC---CCCCEEEEEeeCHHHHHHHHHHHhC-----C
Confidence 444444444 48888843 2345555555565566677878 9999999999999999999988653 7
Q ss_pred CCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHH
Q 040403 366 NNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEV 445 (623)
Q Consensus 366 ls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~ev 445 (623)
. +++.+|+.. .+...+.. .... .....+|.++++ +.|++|-+. ..+.++++.
T Consensus 179 ~----------~V~~~dr~~-----------~~~~~~~~-~g~~---~~~~~~l~~~l~--~aDvVi~~~-p~~~i~~~~ 230 (293)
T 3d4o_A 179 A----------KVKVGARES-----------DLLARIAE-MGME---PFHISKAAQELR--DVDVCINTI-PALVVTANV 230 (293)
T ss_dssp C----------EEEEEESSH-----------HHHHHHHH-TTSE---EEEGGGHHHHTT--TCSEEEECC-SSCCBCHHH
T ss_pred C----------EEEEEECCH-----------HHHHHHHH-CCCe---ecChhhHHHHhc--CCCEEEECC-ChHHhCHHH
Confidence 3 588888741 11111211 0000 001235888887 899999766 568999999
Q ss_pred HHHcccCCCCCCEEEecC-CCCCCCCCCHHHH
Q 040403 446 LEAMRGSTSTRPAIFAMS-NPTNNAECTPEEA 476 (623)
Q Consensus 446 v~~M~a~~~erPIIFaLS-NPt~~~E~tpeda 476 (623)
++.| .+..+|+=+| +|. ++..+.+
T Consensus 231 l~~m----k~~~~lin~ar~~~---~~~~~~a 255 (293)
T 3d4o_A 231 LAEM----PSHTFVIDLASKPG---GTDFRYA 255 (293)
T ss_dssp HHHS----CTTCEEEECSSTTC---SBCHHHH
T ss_pred HHhc----CCCCEEEEecCCCC---CCCHHHH
Confidence 9999 5677888888 454 4555444
No 15
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=96.72 E-value=0.012 Score=62.83 Aligned_cols=108 Identities=19% Similarity=0.292 Sum_probs=67.9
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCC-------CCC---hhhHHhHHH
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRE-------NID---PDAKPFARK 404 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~-------~l~---~~~~~fA~~ 404 (623)
+...||+|+|+|.+|..+|+.+... |. +++++|++.-..+.-. ++. .....|++.
T Consensus 182 v~~~kV~ViG~G~iG~~aa~~a~~l-----Ga----------~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~ 246 (381)
T 3p2y_A 182 VKPASALVLGVGVAGLQALATAKRL-----GA----------KTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARE 246 (381)
T ss_dssp ECCCEEEEESCSHHHHHHHHHHHHH-----TC----------EEEEECSSGGGHHHHHHTTCEECCCC------------
T ss_pred cCCCEEEEECchHHHHHHHHHHHHC-----CC----------EEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhh
Confidence 4678999999999999999988775 73 5888998642110000 000 000111110
Q ss_pred h-hhhcccccCCCCCHHHHHhhcCCcEEEeccCC-----CCCCCHHHHHHcccCCCCCCEEEecCCCC
Q 040403 405 V-NEISRQGLWEGASLVEVVQQVKPDVLLGLSAV-----GGLFSKEVLEAMRGSTSTRPAIFAMSNPT 466 (623)
Q Consensus 405 ~-~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~-----~g~Ft~evv~~M~a~~~erPIIFaLSNPt 466 (623)
- .++. .....+|.++++ +.|++|++... +.+||+++++.| .+..+|+-+|=+.
T Consensus 247 ~~~~~~---~~~~~~l~e~l~--~aDIVI~tv~iPg~~ap~Lvt~emv~~M----kpGsVIVDvA~d~ 305 (381)
T 3p2y_A 247 LSEAER---AQQQQALEDAIT--KFDIVITTALVPGRPAPRLVTAAAATGM----QPGSVVVDLAGET 305 (381)
T ss_dssp -CHHHH---HHHHHHHHHHHT--TCSEEEECCCCTTSCCCCCBCHHHHHTS----CTTCEEEETTGGG
T ss_pred hhHHHH---hhhHHHHHHHHh--cCCEEEECCCCCCcccceeecHHHHhcC----CCCcEEEEEeCCC
Confidence 0 0000 011235889998 99999997433 457999999999 6788999998654
No 16
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*
Probab=96.36 E-value=0.019 Score=60.36 Aligned_cols=123 Identities=18% Similarity=0.325 Sum_probs=70.9
Q ss_pred HHHHHHHHhCCCC-------CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCC
Q 040403 320 GLLGAVRAQGRSM-------IDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRE 392 (623)
Q Consensus 320 gll~A~r~~g~~~-------~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~ 392 (623)
+++.+.+..++.. ..+...+|+|+|+|.+|.++++.+... |. +++.+|++.--.....
T Consensus 148 av~~~~~~~~~~~~~~~~~~~~l~g~~V~ViGaG~iG~~aa~~a~~~-----Ga----------~V~~~d~~~~~~~~~~ 212 (384)
T 1l7d_A 148 AVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRL-----GA----------VVMATDVRAATKEQVE 212 (384)
T ss_dssp HHHHHHHHCSSCSSCEEETTEEECCCEEEEECCSHHHHHHHHHHHHT-----TC----------EEEEECSCSTTHHHHH
T ss_pred HHHHHHHHhhhcccchhccCCCCCCCEEEEECCCHHHHHHHHHHHHC-----CC----------EEEEEeCCHHHHHHHH
Confidence 5556666555410 026889999999999999998887653 73 3888887532100000
Q ss_pred CCC-------h-------hhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEecc---C--CCCCCCHHHHHHcccCC
Q 040403 393 NID-------P-------DAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLS---A--VGGLFSKEVLEAMRGST 453 (623)
Q Consensus 393 ~l~-------~-------~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S---~--~~g~Ft~evv~~M~a~~ 453 (623)
.+. . .+-.|++.-.+ .+.......|.+.++ +.|++|.++ + .+++++++.++.|
T Consensus 213 ~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~--~~~~~~~~~l~~~~~--~aDvVi~~~~~pg~~~~~li~~~~l~~m---- 284 (384)
T 1l7d_A 213 SLGGKFITVDDEAMKTAETAGGYAKEMGE--EFRKKQAEAVLKELV--KTDIAITTALIPGKPAPVLITEEMVTKM---- 284 (384)
T ss_dssp HTTCEECCC-------------------------CCHHHHHHHHHT--TCSEEEECCCCTTSCCCCCSCHHHHTTS----
T ss_pred HcCCeEEeecccccccccccccchhhcCH--HHHhhhHHHHHHHhC--CCCEEEECCccCCCCCCeeeCHHHHhcC----
Confidence 000 0 00001100000 000000012777777 799999988 3 2357899999999
Q ss_pred CCCCEEEecCCC
Q 040403 454 STRPAIFAMSNP 465 (623)
Q Consensus 454 ~erPIIFaLSNP 465 (623)
.+..+|+-+|-+
T Consensus 285 k~g~vivdva~~ 296 (384)
T 1l7d_A 285 KPGSVIIDLAVE 296 (384)
T ss_dssp CTTCEEEETTGG
T ss_pred CCCCEEEEEecC
Confidence 577889988864
No 17
>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A
Probab=96.00 E-value=0.084 Score=57.18 Aligned_cols=184 Identities=15% Similarity=0.166 Sum_probs=125.3
Q ss_pred CCchhhhHhHHHHHHHHHHhC-CceeeecccCCCchHH--HHHHHHhcc--C---Ccc----------ccCcchhHHHHH
Q 040403 257 LDGDEYVSVIDEFMEAIFTRW-PNVIVQFEDFQSKWAF--KLLQRYRYK--Y---RMF----------NDDVQGTAGVAV 318 (623)
Q Consensus 257 v~g~~Y~~~vdefv~av~~~~-P~~lIqfEDf~~~nAf--~lL~ryr~~--~---~~F----------NDDiQGTaaV~l 318 (623)
.+..|-..|...|+.++...- |+.-|-=+|++..-.. -+.+.|+.. . .++ .+--.-||--+.
T Consensus 126 ~s~~El~r~~r~f~~~l~~~iG~~~dipApDvgt~~~~m~~~~~~y~~~~g~~~~~~vTGkp~~~GGs~~r~~aTg~Gv~ 205 (424)
T 3k92_A 126 MSFGELERLSRGYVRAISQIVGPTKDIPAPDVYTNSQIMAWMMDEYSRLREFDSPGFITGKPLVLGGSQGRETATAQGVT 205 (424)
T ss_dssp SCHHHHHHHHHHHHHHHGGGCBTTTEECCBCTTCCHHHHHHHHHHHHHHHTSCCGGGCSSCCGGGTCCTTTTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCccCCcCCCCHHHHHHHHHHHHHHhCCCCcceeecccccCCCcCCCcccHHHHHH
Confidence 455677788999999998866 8777878999874222 255677531 1 122 233455888888
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhh
Q 040403 319 AGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDA 398 (623)
Q Consensus 319 Agll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~ 398 (623)
.++-.+++..|.+ |++.||+|-|.|..|...|++|.+. |. +-+.+.|++|-|++.. .|+...
T Consensus 206 ~~~~~~~~~~g~~---l~g~~vaVqG~GnVG~~aa~~l~e~-----Ga---------kVVavsD~~G~iyd~~-GlD~~~ 267 (424)
T 3k92_A 206 ICIEEAVKKKGIK---LQNARIIIQGFGNAGSFLAKFMHDA-----GA---------KVIGISDANGGLYNPD-GLDIPY 267 (424)
T ss_dssp HHHHHHHHHTTCC---GGGCEEEEECCSHHHHHHHHHHHHH-----TC---------EEEEEECSSCEEECTT-CCCHHH
T ss_pred HHHHHHHHHcCCC---cccCEEEEECCCHHHHHHHHHHHHC-----CC---------EEEEEECCCCcEECCC-CCCHHH
Confidence 8899999999998 9999999999999999999999875 73 4467999999999643 354322
Q ss_pred -HHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCC-CC
Q 040403 399 -KPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSN-PT 466 (623)
Q Consensus 399 -~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSN-Pt 466 (623)
+.+......+.... ....+-.+. -.++.||||=+.. .+..|++-++.+ .-.+|.--+| |+
T Consensus 268 l~~~~~~~g~i~~~~-a~~~~~~~i-~~~~~DIliPcA~-~n~I~~~~a~~l-----~ak~V~EgAN~p~ 329 (424)
T 3k92_A 268 LLDKRDSFGMVTNLF-TDVITNEEL-LEKDCDILVPAAI-SNQITAKNAHNI-----QASIVVERANGPT 329 (424)
T ss_dssp HHHHCCSSSCCGGGC-SCCBCHHHH-HHSCCSEEEECSC-SSCBCTTTGGGC-----CCSEEECCSSSCB
T ss_pred HHHHHHHhCCCCCCC-cEEecCccc-eeccccEEeecCc-ccccChhhHhhc-----CceEEEcCCCCCC
Confidence 11111000011100 111123343 4579999998885 599999988887 3578888888 65
No 18
>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E
Probab=95.97 E-value=0.43 Score=52.09 Aligned_cols=184 Identities=13% Similarity=0.122 Sum_probs=124.3
Q ss_pred CCCchhhhHhHHHHHHHHHHhC-CceeeecccCCCchHH--HHHHHHh---cc-CCcc----------ccCcchhHHHHH
Q 040403 256 RLDGDEYVSVIDEFMEAIFTRW-PNVIVQFEDFQSKWAF--KLLQRYR---YK-YRMF----------NDDVQGTAGVAV 318 (623)
Q Consensus 256 Rv~g~~Y~~~vdefv~av~~~~-P~~lIqfEDf~~~nAf--~lL~ryr---~~-~~~F----------NDDiQGTaaV~l 318 (623)
..+..|...|...|+..+.+.. |..-|--.|++..-.- -+.+.|+ .. -+|| .+.-.-||-=+.
T Consensus 140 ~~s~~El~R~~~~f~~eL~~~iG~d~dvpa~Dig~~~~em~~~~~~y~~~~~~~~~v~TGk~~~~GGs~~r~~aTg~Gv~ 219 (450)
T 4fcc_A 140 GKSEGEVMRFCQALMTELYRHLGADTDVPAGDIGVGGREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLV 219 (450)
T ss_dssp TCCHHHHHHHHHHHHHHHGGGCBTTTEEEECBTTBCHHHHHHHHHHHHHHHTCCSCCCSSCCGGGTCCTTTTTHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhheecCCCCCCccceeecchhhhhhhhhhhhccCCCceeecCCCcccCCCCCCCCceeeeHH
Confidence 4567788889999999987766 8888888999764321 2344444 33 2232 233344777778
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhh
Q 040403 319 AGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDA 398 (623)
Q Consensus 319 Agll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~ 398 (623)
-++-.+++..|.+ |++.||+|-|.|..|...|+.|.+. |. +=|.+-|++|-|++.. .|+..+
T Consensus 220 ~~~~~~~~~~~~~---l~Gk~vaVQG~GnVG~~aa~~L~e~-----Ga---------kvVavsD~~G~i~d~~-Gid~e~ 281 (450)
T 4fcc_A 220 YFTEAMLKRHGMG---FEGMRVSVSGSGNVAQYAIEKAMEF-----GA---------RVITASDSSGTVVDES-GFTKEK 281 (450)
T ss_dssp HHHHHHHHHTTCC---STTCEEEEECCSHHHHHHHHHHHHT-----TC---------EEEEEEETTEEEECTT-CCCHHH
T ss_pred HHHHHHHHHcCCC---cCCCEEEEeCCChHHHHHHHHHHhc-----CC---------eEEEEecCCceEEeCC-CCCHHH
Confidence 8888999999998 9999999999999999999998874 84 4467889999998643 354433
Q ss_pred HHhHHHhhhhcccccCCCCCHHHH-------------HhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCC-
Q 040403 399 KPFARKVNEISRQGLWEGASLVEV-------------VQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSN- 464 (623)
Q Consensus 399 ~~fA~~~~~~~~~~~~~~~~L~e~-------------V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSN- 464 (623)
.......+. ...+.+.+. +-.++.|||+=+.. ++.+|++-++.+++..| .+|.--+|
T Consensus 282 l~~l~e~k~------~~~g~v~~~~~~~g~~~~~~~~i~~~~~DI~iPcAl-~~~I~~~~a~~L~a~g~--k~IaEgAN~ 352 (450)
T 4fcc_A 282 LARLIEIKS------SRDGRVADYAKEFGLVYLEGQQPWSVPVDIALPCAT-QNELDVDAAHQLIANGV--KAVAEGANM 352 (450)
T ss_dssp HHHHHHHHT------STTCCHHHHHHHHTCEEEETCCGGGSCCSEEEECSC-TTCBCHHHHHHHHHTTC--CEEECCSSS
T ss_pred HHHHHHHhc------ccCCccccccccCCcEEecCcccccCCccEEeeccc-cccccHHHHHHHHhcCc--eEEecCCCC
Confidence 221110000 011112111 23468999998885 58999999999954333 57777777
Q ss_pred CC
Q 040403 465 PT 466 (623)
Q Consensus 465 Pt 466 (623)
|+
T Consensus 353 p~ 354 (450)
T 4fcc_A 353 PT 354 (450)
T ss_dssp CB
T ss_pred CC
Confidence 55
No 19
>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A
Probab=95.89 E-value=0.18 Score=54.85 Aligned_cols=185 Identities=14% Similarity=0.128 Sum_probs=122.3
Q ss_pred CCchhhhHhHHHHHHHHHHhC-CceeeecccCCCch--HHHHHHHHhc---c--CCcc----------ccCcchhHHHHH
Q 040403 257 LDGDEYVSVIDEFMEAIFTRW-PNVIVQFEDFQSKW--AFKLLQRYRY---K--YRMF----------NDDVQGTAGVAV 318 (623)
Q Consensus 257 v~g~~Y~~~vdefv~av~~~~-P~~lIqfEDf~~~n--Af~lL~ryr~---~--~~~F----------NDDiQGTaaV~l 318 (623)
.+..|-..|...|+.++...- |+.-|-=+|++..- ---+.+.|+. . -.++ .+.-.-||-=+.
T Consensus 140 ~s~~Eler~~r~f~~~l~~~iGp~~dvpA~DvGt~~~~m~~~~~~y~~~~~~~~~g~vTGkp~~~GGs~~r~~aTg~Gv~ 219 (440)
T 3aog_A 140 LSPGELERLTRRYTSEIGILLGPDRDIPAPDVNTGEREMAWMMDTYSMNVGRTVPGVVTGKPIALGGSLGRRDATGRGVF 219 (440)
T ss_dssp SCHHHHHHHHHHHHHHHGGGCBTTTEECCBCTTCCHHHHHHHHHHHHHHHTSCCGGGSSSCCGGGTCCTTCTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcEEECCCCCCCHHHHHHHHHHHHHhhCCCCCCeEeccchhhCCCCCCCcchHHHHH
Confidence 345677788999999998877 88888889998742 2225566643 1 1222 233345776677
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhh
Q 040403 319 AGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDA 398 (623)
Q Consensus 319 Agll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~ 398 (623)
-++-.+++..|.+ |++.||+|.|.|..|...|++|.+. |. +=+-+.|++|-|++... |+...
T Consensus 220 ~~~~~~~~~~g~~---l~g~~vaVqGfGnVG~~~a~~L~e~-----Ga---------kvVavsD~~G~i~dp~G-ld~~~ 281 (440)
T 3aog_A 220 ITAAAAAEKIGLQ---VEGARVAIQGFGNVGNAAARAFHDH-----GA---------RVVAVQDHTGTVYNEAG-IDPYD 281 (440)
T ss_dssp HHHHHHHHHHTCC---STTCEEEEECCSHHHHHHHHHHHHT-----TC---------EEEEEECSSCEEECTTC-CCHHH
T ss_pred HHHHHHHHhcCCC---ccCCEEEEeccCHHHHHHHHHHHHC-----CC---------EEEEEEcCCcEEECCCC-CCHHH
Confidence 7788889999998 9999999999999999999988774 73 22449999999887543 43322
Q ss_pred -HHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCC-CC
Q 040403 399 -KPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSN-PT 466 (623)
Q Consensus 399 -~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSN-Pt 466 (623)
+.+......+..+......+-.+. -.++.||||=++. ++..|.+-++.+ .-.+|.--+| |+
T Consensus 282 l~~~~~~~g~i~~y~~a~~i~~~ei-~~~~~DIlvPcA~-~n~i~~~na~~l-----~ak~VvEgAN~p~ 344 (440)
T 3aog_A 282 LLRHVQEFGGVRGYPKAEPLPAADF-WGLPVEFLVPAAL-EKQITEQNAWRI-----RARIVAEGANGPT 344 (440)
T ss_dssp HHHHHHHTSSSTTCTTSEECCHHHH-TTCCCSEEEECSS-SSCBCTTTGGGC-----CCSEEECCSSSCB
T ss_pred HHHHHHhcCCcccCCCceEcCchhh-hcCCCcEEEecCC-cCccchhhHHHc-----CCcEEEecCcccc
Confidence 222221111111111111233443 4578999998774 688888888877 3467777777 55
No 20
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=95.81 E-value=0.021 Score=59.29 Aligned_cols=141 Identities=16% Similarity=0.116 Sum_probs=97.2
Q ss_pred HHHHHHHHHhC--Cce---eeecccCCC--chHHHHHHHHh--ccCCccc----------cCcchhHHHHHHHHHHHHHH
Q 040403 267 DEFMEAIFTRW--PNV---IVQFEDFQS--KWAFKLLQRYR--YKYRMFN----------DDVQGTAGVAVAGLLGAVRA 327 (623)
Q Consensus 267 defv~av~~~~--P~~---lIqfEDf~~--~nAf~lL~ryr--~~~~~FN----------DDiQGTaaV~lAgll~A~r~ 327 (623)
+|+.+.+.++- |++ ++|+==.+. -|..++++.-. +.+=.|| +...+-.-+|-.|++-.++.
T Consensus 79 ~ell~~I~~lN~D~~V~GIlvqlPLP~~~~id~~~i~~~I~p~KDVDG~hp~N~G~l~~g~~~~~~~PcTp~gi~~ll~~ 158 (301)
T 1a4i_A 79 SEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPEKDVDGLTSINAGRLARGDLNDCFIPCTPKGCLELIKE 158 (301)
T ss_dssp HHHHHHHHHHHHCTTCCEEEECSSCCCSSCCCHHHHHHTSCGGGBTTCCSHHHHHHHHTTCCSSCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCCcEEEEeccCCCCCccCHHHHHhccCCCCCccCCChhhHHHHhcCCCCCCccCchHHHHHHHHHH
Confidence 56666666665 653 777644444 45666665532 1222222 11224455788889999999
Q ss_pred hCCCCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhh
Q 040403 328 QGRSMIDFPKQKIVVAGAG-SAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVN 406 (623)
Q Consensus 328 ~g~~~~~l~d~riv~~GAG-sAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~ 406 (623)
.+.+ ++..++||+|+| ..|.-+|.++... | .++.+++++
T Consensus 159 ~~i~---l~gk~vvVIG~s~iVG~p~A~lL~~~-----g----------AtVtv~hs~---------------------- 198 (301)
T 1a4i_A 159 TGVP---IAGRHAVVVGRSKIVGAPMHDLLLWN-----N----------ATVTTCHSK---------------------- 198 (301)
T ss_dssp TTCC---CTTCEEEEECCCTTTHHHHHHHHHHT-----T----------CEEEEECTT----------------------
T ss_pred cCCC---CCCCEEEEECCCchHHHHHHHHHHhC-----C----------CeEEEEECC----------------------
Confidence 9999 999999999999 5799998888763 5 357788753
Q ss_pred hhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCC
Q 040403 407 EISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNP 465 (623)
Q Consensus 407 ~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNP 465 (623)
..+|.+.++ ++|++|++.+.++.+|+++|+ +--+|+=++-|
T Consensus 199 ---------t~~L~~~~~--~ADIVI~Avg~p~~I~~~~vk-------~GavVIDVgi~ 239 (301)
T 1a4i_A 199 ---------TAHLDEEVN--KGDILVVATGQPEMVKGEWIK-------PGAIVIDCGIN 239 (301)
T ss_dssp ---------CSSHHHHHT--TCSEEEECCCCTTCBCGGGSC-------TTCEEEECCCB
T ss_pred ---------cccHHHHhc--cCCEEEECCCCcccCCHHHcC-------CCcEEEEccCC
Confidence 123788888 899999999999999998764 23456655543
No 21
>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}
Probab=95.81 E-value=0.3 Score=53.43 Aligned_cols=197 Identities=14% Similarity=0.157 Sum_probs=127.4
Q ss_pred CCchhhhHhHHHHHHHHHHhC-CceeeecccCCCchHH--HHHHHHhc---cCC-cc----------ccCcchhHHHHHH
Q 040403 257 LDGDEYVSVIDEFMEAIFTRW-PNVIVQFEDFQSKWAF--KLLQRYRY---KYR-MF----------NDDVQGTAGVAVA 319 (623)
Q Consensus 257 v~g~~Y~~~vdefv~av~~~~-P~~lIqfEDf~~~nAf--~lL~ryr~---~~~-~F----------NDDiQGTaaV~lA 319 (623)
.+..|...|...||..+.+.. |..-|-=+|++..-.. -+.+.|+. ..+ |+ ..--.-||-=+.-
T Consensus 145 ~s~~el~r~~r~f~~eL~~~iGp~~DvpApDvGt~~~em~w~~~~y~~~~~~~~g~vTGKp~~~GGs~~r~~aTg~Gv~~ 224 (456)
T 3r3j_A 145 KSENEILKFCQSFMTNLFRYIGPNTDVPAGDIGVGGREIGYLFGQYKKLKNSFEGVLTGKNIKWGGSNIRAEATGYGVVY 224 (456)
T ss_dssp CCHHHHHHHHHHHHHHHGGGCBTTTEEEECBTTBCHHHHHHHHHHHHHHHTSCCCSCBSCCGGGTCCTTTTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCCCCHHHHHHHHHHHHhhcCcccceecCCcccccCCCCCCcccchHHHH
Confidence 456677888888999886554 8888888999874322 24566653 221 11 1122346777777
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhH
Q 040403 320 GLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAK 399 (623)
Q Consensus 320 gll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~ 399 (623)
++-.+++..|.+ |++.||+|-|.|..|...|+.|.+. |. +=+.+.|++|-|++.. .|+..+.
T Consensus 225 ~~~~~~~~~g~~---l~g~~VaVQG~GnVG~~aa~~L~e~-----Ga---------kvVavsD~~G~iyd~~-Gld~~~l 286 (456)
T 3r3j_A 225 FAENVLKDLNDN---LENKKCLVSGSGNVAQYLVEKLIEK-----GA---------IVLTMSDSNGYILEPN-GFTKEQL 286 (456)
T ss_dssp HHHHHHHTTTCC---STTCCEEEECCSHHHHHHHHHHHHH-----TC---------CBCCEECSSCEEECTT-CCCHHHH
T ss_pred HHHHHHHHcCCC---ccCCEEEEECCCHHHHHHHHHHHHC-----CC---------EEEEEECCCCcEECCC-CCCHHHH
Confidence 888888888988 9999999999999999999998875 74 3355899999998643 3654433
Q ss_pred HhH---HHhh--hhccc----ccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCC-CCCCC
Q 040403 400 PFA---RKVN--EISRQ----GLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSN-PTNNA 469 (623)
Q Consensus 400 ~fA---~~~~--~~~~~----~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSN-Pt~~~ 469 (623)
... +..+ .+... ......+-.+ +-.++.||||=+.. ++..|++-++.+ -+ +.-+||.--+| |++ +
T Consensus 287 ~~~~~~k~~~~~~v~~~~~~~~~a~~v~~~~-i~~~~~DI~iPcA~-~~~I~~~na~~l-~~-~~ak~V~EgAN~p~T-~ 361 (456)
T 3r3j_A 287 NYIMDIKNNQRLRLKEYLKYSKTAKYFENQK-PWNIPCDIAFPCAT-QNEINENDADLF-IQ-NKCKMIVEGANMPTH-I 361 (456)
T ss_dssp HHHHHHHHTSCCCGGGGGGTCSSCEEECSCC-GGGSCCSEEEECSC-TTCBCHHHHHHH-HH-HTCCEEECCSSSCBC-T
T ss_pred HHHHHHHHhcCcchhhhhhcCCCceEeCCcc-ccccCccEEEeCCC-ccchhhHHHHHH-Hh-cCCeEEEecCCCCCC-H
Confidence 211 0000 00000 0000000011 23568999998885 799999999998 11 25689999998 653 4
Q ss_pred CCCHHHHhc
Q 040403 470 ECTPEEAFS 478 (623)
Q Consensus 470 E~tpeda~~ 478 (623)
| +++.+.
T Consensus 362 e--A~~iL~ 368 (456)
T 3r3j_A 362 K--ALHKLK 368 (456)
T ss_dssp T--HHHHHH
T ss_pred H--HHHHHH
Confidence 4 455555
No 22
>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}
Probab=95.78 E-value=0.055 Score=54.43 Aligned_cols=121 Identities=15% Similarity=0.162 Sum_probs=76.5
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEG 416 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~ 416 (623)
..||.|+|+|..|.+||..+... |... .+|+++|++ .+....+++. .. ....
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~-----g~~~-------~~V~v~dr~----------~~~~~~l~~~-~g-----i~~~ 54 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIAN-----GYDP-------NRICVTNRS----------LDKLDFFKEK-CG-----VHTT 54 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHT-----TCCG-------GGEEEECSS----------SHHHHHHHHT-TC-----CEEE
T ss_pred CCEEEEEcccHHHHHHHHHHHHC-----CCCC-------CeEEEEeCC----------HHHHHHHHHH-cC-----CEEe
Confidence 46899999999999999988874 7643 578999874 1222223211 01 1224
Q ss_pred CCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccC--CCCCCEEEecCCCCCCCCCCHHHHhcccCC--cEEEecCCCC
Q 040403 417 ASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGS--TSTRPAIFAMSNPTNNAECTPEEAFSIVGD--NIIFASGSPF 492 (623)
Q Consensus 417 ~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~--~~erPIIFaLSNPt~~~E~tpeda~~wT~G--rai~AtGsPF 492 (623)
.++.|+++ ++|++| ++..+ -..+++++.+ .. ..++.+|...++..+ .+..-+|... +++-+ -|+
T Consensus 55 ~~~~~~~~--~aDvVi-lav~p-~~~~~vl~~l-~~~~l~~~~iiiS~~agi~-----~~~l~~~l~~~~~vvr~--mPn 122 (280)
T 3tri_A 55 QDNRQGAL--NADVVV-LAVKP-HQIKMVCEEL-KDILSETKILVISLAVGVT-----TPLIEKWLGKASRIVRA--MPN 122 (280)
T ss_dssp SCHHHHHS--SCSEEE-ECSCG-GGHHHHHHHH-HHHHHTTTCEEEECCTTCC-----HHHHHHHHTCCSSEEEE--ECC
T ss_pred CChHHHHh--cCCeEE-EEeCH-HHHHHHHHHH-HhhccCCCeEEEEecCCCC-----HHHHHHHcCCCCeEEEE--ecC
Confidence 57889998 788887 44334 3457888888 43 356668888888774 3444445432 33322 366
Q ss_pred Ccccc
Q 040403 493 KDVDL 497 (623)
Q Consensus 493 ~pv~~ 497 (623)
.|...
T Consensus 123 ~p~~v 127 (280)
T 3tri_A 123 TPSSV 127 (280)
T ss_dssp GGGGG
T ss_pred ChHHh
Confidence 66665
No 23
>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}
Probab=95.66 E-value=0.14 Score=55.44 Aligned_cols=180 Identities=16% Similarity=0.196 Sum_probs=122.4
Q ss_pred CCchhhhHhHHHHHHHHHHhC-CceeeecccCCCchH--HHHHHHHhcc--C---Ccc----------ccCcchhHHHHH
Q 040403 257 LDGDEYVSVIDEFMEAIFTRW-PNVIVQFEDFQSKWA--FKLLQRYRYK--Y---RMF----------NDDVQGTAGVAV 318 (623)
Q Consensus 257 v~g~~Y~~~vdefv~av~~~~-P~~lIqfEDf~~~nA--f~lL~ryr~~--~---~~F----------NDDiQGTaaV~l 318 (623)
.+..|-..|...|+.++...- |+.-|-=+|++..-. --+.+.|+.. . .++ .+.-.-||-=+.
T Consensus 123 ~s~~El~r~~r~f~~~l~~~iGp~~dvpA~DvGt~~~~m~~~~~~y~~~~~~~~~~~vtGk~~~~GGs~~r~~aTg~Gv~ 202 (419)
T 3aoe_E 123 LSPQELERLVRRYTAELVGLIGPDSDILGPDLGADQQVMAWIMDTYSMTVGSTVPGVVTGKPHALGGSEGRDDAAGLGAL 202 (419)
T ss_dssp SCHHHHHHHHHHHHHHHTTTCBTTTEEEEEBTTBCHHHHHHHHHHHHHHHTSCCGGGBSSCCGGGTCCSSCSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCEEECCCCCCCHHHHHHHHHHHHHhhCCCCCCeeeccchhcCCCCCCccchHHHHH
Confidence 345677788999999998876 888888899987532 2355666431 1 122 233345777777
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEE-EEccCCcccCCCCCCChh
Q 040403 319 AGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFW-VVDAKGLITEDRENIDPD 397 (623)
Q Consensus 319 Agll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~-lvD~~GLi~~~r~~l~~~ 397 (623)
-++-.+++..|.+ |++.||+|-|.|..|...|++|.+. |. +++ +.|++|-|++.. .|+..
T Consensus 203 ~~~~~~~~~~g~~---l~gk~vaVqG~GnVG~~~a~~L~~~-----Ga----------kVVavsD~~G~i~dp~-Gld~~ 263 (419)
T 3aoe_E 203 LVLEALAKRRGLD---LRGARVVVQGLGQVGAAVALHAERL-----GM----------RVVAVATSMGGMYAPE-GLDVA 263 (419)
T ss_dssp HHHHHHHHHHTCC---CTTCEEEEECCSHHHHHHHHHHHHT-----TC----------EEEEEEETTEEEECTT-CCCHH
T ss_pred HHHHHHHHhcCCC---ccCCEEEEECcCHHHHHHHHHHHHC-----CC----------EEEEEEcCCCeEECCC-CCCHH
Confidence 7888889999998 9999999999999999999888763 73 455 999999998753 34433
Q ss_pred h-HHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCC-CC
Q 040403 398 A-KPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSN-PT 466 (623)
Q Consensus 398 ~-~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSN-Pt 466 (623)
. +.+......+..+.. ... + +-.++.|||+=++ .++.+|++-.+.+ .-.||.--+| |+
T Consensus 264 ~l~~~~~~~g~v~~~~~-~~~---e-~~~~~~DVliP~A-~~n~i~~~~A~~l-----~ak~V~EgAN~p~ 323 (419)
T 3aoe_E 264 EVLSAYEATGSLPRLDL-APE---E-VFGLEAEVLVLAA-REGALDGDRARQV-----QAQAVVEVANFGL 323 (419)
T ss_dssp HHHHHHHHHSSCSCCCB-CTT---T-GGGSSCSEEEECS-CTTCBCHHHHTTC-----CCSEEEECSTTCB
T ss_pred HHHHHHHhhCCcceeec-cch---h-hhccCceEEEecc-cccccccchHhhC-----CceEEEECCCCcC
Confidence 2 222221111111000 111 2 3457999999887 5799999998887 3468988888 65
No 24
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=95.56 E-value=0.033 Score=57.43 Aligned_cols=130 Identities=16% Similarity=0.142 Sum_probs=88.5
Q ss_pred HHHHHHHHHhC--Cce---eeecccCCCchHHHHHHHHh--ccCCcccc---------CcchhHHHHHHHHHHHHHHhCC
Q 040403 267 DEFMEAIFTRW--PNV---IVQFEDFQSKWAFKLLQRYR--YKYRMFND---------DVQGTAGVAVAGLLGAVRAQGR 330 (623)
Q Consensus 267 defv~av~~~~--P~~---lIqfEDf~~~nAf~lL~ryr--~~~~~FND---------DiQGTaaV~lAgll~A~r~~g~ 330 (623)
+|+.+.+.+.. |++ ++|+==.+.-+..++++.-. +.+=.||. +..+-.-+|-.|++..++-.+.
T Consensus 78 ~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p~KDVDG~~~~N~G~l~~g~~~~~~PcTp~gv~~lL~~~~i 157 (285)
T 3l07_A 78 SELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFHPTNVGRLQLRDKKCLESCTPKGIMTMLREYGI 157 (285)
T ss_dssp HHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHHSCGGGBTTCCSHHHHHHHHHTCTTCCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCCCcEEEEcCCCCCCcCHHHHHhhCCcccccccCChhheeehhcCCCCCCCCCCHHHHHHHHHHhCC
Confidence 56777776665 553 66664334444444544432 22222221 1023344677788899999999
Q ss_pred CCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhc
Q 040403 331 SMIDFPKQKIVVAGAGS-AGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEIS 409 (623)
Q Consensus 331 ~~~~l~d~riv~~GAGs-Ag~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~ 409 (623)
+ |++.++|++|+|. .|..+|.+|... |. .+.+++|+
T Consensus 158 ~---l~Gk~vvVIG~s~iVG~p~A~lL~~~-----gA----------tVtv~hs~------------------------- 194 (285)
T 3l07_A 158 K---TEGAYAVVVGASNVVGKPVSQLLLNA-----KA----------TVTTCHRF------------------------- 194 (285)
T ss_dssp C---CTTCEEEEECCCTTTHHHHHHHHHHT-----TC----------EEEEECTT-------------------------
T ss_pred C---CCCCEEEEECCCchhHHHHHHHHHHC-----CC----------eEEEEeCC-------------------------
Confidence 9 9999999999876 899999988763 63 46777652
Q ss_pred ccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHH
Q 040403 410 RQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLE 447 (623)
Q Consensus 410 ~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 447 (623)
..+|.+.++ ++|++|.+.+.++.+|.++|+
T Consensus 195 ------t~~L~~~~~--~ADIVI~Avg~p~~I~~~~vk 224 (285)
T 3l07_A 195 ------TTDLKSHTT--KADILIVAVGKPNFITADMVK 224 (285)
T ss_dssp ------CSSHHHHHT--TCSEEEECCCCTTCBCGGGSC
T ss_pred ------chhHHHhcc--cCCEEEECCCCCCCCCHHHcC
Confidence 113778888 899999999999999997763
No 25
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=95.55 E-value=0.034 Score=57.34 Aligned_cols=130 Identities=16% Similarity=0.168 Sum_probs=91.2
Q ss_pred HHHHHHHHHhC--Cce---eeecccCCCchHHHHHHHHh--ccCCccc---------cCcchhHHHHHHHHHHHHHHhCC
Q 040403 267 DEFMEAIFTRW--PNV---IVQFEDFQSKWAFKLLQRYR--YKYRMFN---------DDVQGTAGVAVAGLLGAVRAQGR 330 (623)
Q Consensus 267 defv~av~~~~--P~~---lIqfEDf~~~nAf~lL~ryr--~~~~~FN---------DDiQGTaaV~lAgll~A~r~~g~ 330 (623)
+|+.+.+.+.. |++ ++|+==...-+..++++.-. +.+=.|| .+-.|-.-+|-.|++..++-.+.
T Consensus 77 ~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p~KDVDg~~~~N~g~l~~g~~~g~~PcTp~gv~~lL~~~~i 156 (285)
T 3p2o_A 77 NELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDGFHPINVGYLNLGLESGFLPCTPLGVMKLLKAYEI 156 (285)
T ss_dssp HHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHHHHHSCGGGCTTCCSHHHHHHHHTTCCSSCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCCCCEEEecCCCCCCcCHHHHHhhCCcccccccCCHhhhhhhhcCCCCCCCCCCHHHHHHHHHHhCC
Confidence 56777776665 553 77764444445555555432 2222222 22222455778889999999999
Q ss_pred CCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhc
Q 040403 331 SMIDFPKQKIVVAGAGS-AGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEIS 409 (623)
Q Consensus 331 ~~~~l~d~riv~~GAGs-Ag~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~ 409 (623)
+ |++.++||+|+|. .|..+|.+|... |. .+.+++++
T Consensus 157 ~---l~Gk~vvVvGrs~iVG~p~A~lL~~~-----gA----------tVtv~h~~------------------------- 193 (285)
T 3p2o_A 157 D---LEGKDAVIIGASNIVGRPMATMLLNA-----GA----------TVSVCHIK------------------------- 193 (285)
T ss_dssp C---CTTCEEEEECCCTTTHHHHHHHHHHT-----TC----------EEEEECTT-------------------------
T ss_pred C---CCCCEEEEECCCchHHHHHHHHHHHC-----CC----------eEEEEeCC-------------------------
Confidence 9 9999999999876 899999988763 63 47777752
Q ss_pred ccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHH
Q 040403 410 RQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLE 447 (623)
Q Consensus 410 ~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 447 (623)
..+|.+.++ ++|++|...+.++.++.++|+
T Consensus 194 ------t~~L~~~~~--~ADIVI~Avg~p~~I~~~~vk 223 (285)
T 3p2o_A 194 ------TKDLSLYTR--QADLIIVAAGCVNLLRSDMVK 223 (285)
T ss_dssp ------CSCHHHHHT--TCSEEEECSSCTTCBCGGGSC
T ss_pred ------chhHHHHhh--cCCEEEECCCCCCcCCHHHcC
Confidence 113778888 899999999999999997764
No 26
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=95.49 E-value=0.069 Score=53.42 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=27.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.||.|+|+|..|.+||..+..+ |. +++++|++
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~-----G~----------~V~l~d~~ 36 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFH-----GF----------AVTAYDIN 36 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----TC----------EEEEECSS
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC----------eEEEEeCC
Confidence 5899999999999999998874 73 58888874
No 27
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=95.47 E-value=0.062 Score=55.78 Aligned_cols=130 Identities=13% Similarity=0.141 Sum_probs=92.2
Q ss_pred HHHHHHHHHhC--Cce---eeecccCCCchHHHHHHHHh--ccCCccc----------cCcchhHHHHHHHHHHHHHHhC
Q 040403 267 DEFMEAIFTRW--PNV---IVQFEDFQSKWAFKLLQRYR--YKYRMFN----------DDVQGTAGVAVAGLLGAVRAQG 329 (623)
Q Consensus 267 defv~av~~~~--P~~---lIqfEDf~~~nAf~lL~ryr--~~~~~FN----------DDiQGTaaV~lAgll~A~r~~g 329 (623)
+|+.+.+.+.. |++ ++|+==.+.-+..++++.-. +.+=.|| +...|-.-+|-.|++..++-.+
T Consensus 81 ~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~p~KDVDG~~~~N~G~l~~g~~~~~~~PcTp~gv~~lL~~~~ 160 (300)
T 4a26_A 81 EVLEVNVEKLNNDPNCHGIIVQLPLPKHLNENRAIEKIHPHKDADALLPVNVGLLHYKGREPPFTPCTAKGVIVLLKRCG 160 (300)
T ss_dssp HHHHHHHHHHHTCTTCCEEEECSCCCTTSCHHHHHHTSCGGGCTTCCSHHHHHHHHCTTCCCSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCCCEEEEcCCCCCCCCHHHHHhhCCcccccccCCcceEEEeecCCCcCCCCCCCHHHHHHHHHHcC
Confidence 67777887776 553 77774444445555555432 1222222 2244545677888999999999
Q ss_pred CCCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhh
Q 040403 330 RSMIDFPKQKIVVAGAGS-AGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEI 408 (623)
Q Consensus 330 ~~~~~l~d~riv~~GAGs-Ag~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~ 408 (623)
.+ |++.++||+|+|. .|..+|.+|... |. .+.+++++ + .
T Consensus 161 i~---l~Gk~vvVIG~s~iVG~p~A~lL~~~-----gA----------tVtv~~~~-------T-------------~-- 200 (300)
T 4a26_A 161 IE---MAGKRAVVLGRSNIVGAPVAALLMKE-----NA----------TVTIVHSG-------T-------------S-- 200 (300)
T ss_dssp CC---CTTCEEEEECCCTTTHHHHHHHHHHT-----TC----------EEEEECTT-------S-------------C--
T ss_pred CC---CCCCEEEEECCCchHHHHHHHHHHHC-----CC----------eEEEEeCC-------C-------------C--
Confidence 99 9999999999876 899999998873 62 47788762 1 0
Q ss_pred cccccCCCCCHH--HHHhhcCCcEEEeccCCCCCCCHHHHH
Q 040403 409 SRQGLWEGASLV--EVVQQVKPDVLLGLSAVGGLFSKEVLE 447 (623)
Q Consensus 409 ~~~~~~~~~~L~--e~V~~vkptvLIG~S~~~g~Ft~evv~ 447 (623)
+|. +.++ ++|++|.+.+.++.++.++|+
T Consensus 201 ---------~l~l~~~~~--~ADIVI~Avg~p~~I~~~~vk 230 (300)
T 4a26_A 201 ---------TEDMIDYLR--TADIVIAAMGQPGYVKGEWIK 230 (300)
T ss_dssp ---------HHHHHHHHH--TCSEEEECSCCTTCBCGGGSC
T ss_pred ---------Cchhhhhhc--cCCEEEECCCCCCCCcHHhcC
Confidence 144 7788 899999999999999997763
No 28
>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}
Probab=95.45 E-value=0.25 Score=53.40 Aligned_cols=185 Identities=12% Similarity=0.137 Sum_probs=110.9
Q ss_pred CCchhhhHhHHHHHHHHHHhC-CceeeecccCCCchH--HHHHHHHhcc---C---Ccc----------ccCcchhHHHH
Q 040403 257 LDGDEYVSVIDEFMEAIFTRW-PNVIVQFEDFQSKWA--FKLLQRYRYK---Y---RMF----------NDDVQGTAGVA 317 (623)
Q Consensus 257 v~g~~Y~~~vdefv~av~~~~-P~~lIqfEDf~~~nA--f~lL~ryr~~---~---~~F----------NDDiQGTaaV~ 317 (623)
.+..|-..|...|+.++...- |+.-|-=+|++..-. --+.+.|+.. . .++ .+.-.-||-=+
T Consensus 116 ~s~~el~r~~r~f~~~l~~~iG~~~dvpA~Dvgt~~~~m~~~~~~y~~~~~~~~~~~~vtGk~~~~GGs~~r~~aTg~Gv 195 (421)
T 2yfq_A 116 LSERELEQLSRGWVRGLYKYLGDRIDIPAPDVNTNGQIMSWFVDEYVKLNGERMDIGTFTGKPVAFGGSEGRNEATGFGV 195 (421)
T ss_dssp SCHHHHHHHHHHHHHHHGGGCBTTTEEEEECTTCCHHHHHHHHHHHHHHTTTCCCGGGSCSCCGGGTCCTTCTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcEEECCCCCCCHHHHHHHHHHHHHhhCCCCCCCEEecCchhcCCCCCCCcchHHHH
Confidence 345667778999999998877 888888899987522 2356677531 1 122 22223466666
Q ss_pred HHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC-----CcccCCCC
Q 040403 318 VAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK-----GLITEDRE 392 (623)
Q Consensus 318 lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~-----GLi~~~r~ 392 (623)
.-++-.+++..|.+ |++.||+|.|.|..|...|++|.+. |. +=+-+.|++ |-|++..
T Consensus 196 ~~~~~~~~~~~g~~---l~g~~vaVqG~GnVG~~~a~~L~~~-----Ga---------kvVavsD~~~~~~~G~i~d~~- 257 (421)
T 2yfq_A 196 AVVVRESAKRFGIK---MEDAKIAVQGFGNVGTFTVKNIERQ-----GG---------KVCAIAEWDRNEGNYALYNEN- 257 (421)
T ss_dssp HHHHHHHHHHTTCC---GGGSCEEEECCSHHHHHHHHHHHHT-----TC---------CEEECCBCCSSSCSBCCBCSS-
T ss_pred HHHHHHHHHhcCCC---ccCCEEEEECcCHHHHHHHHHHHHC-----CC---------EEEEEEecCCCccceEEECCC-
Confidence 77788888999998 9999999999999999999988773 74 334489999 9998754
Q ss_pred CCChhh-HHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCC-CC
Q 040403 393 NIDPDA-KPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSN-PT 466 (623)
Q Consensus 393 ~l~~~~-~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSN-Pt 466 (623)
.|+... +.+......+..+......+-.+ +-.++.||||=++ .++..|++-.+.+ ...+|.--+| |+
T Consensus 258 Gld~~~l~~~~~~~g~i~~~~~a~~i~~~~-~~~~~~DIliP~A-~~n~i~~~~A~~l-----~ak~VvEgAN~P~ 326 (421)
T 2yfq_A 258 GIDFKELLAYKEANKTLIGFPGAERITDEE-FWTKEYDIIVPAA-LENVITGERAKTI-----NAKLVCEAANGPT 326 (421)
T ss_dssp CCCHHHHHHHHHHHCC----------------------CEEECS-CSSCSCHHHHTTC-----CCSEEECCSSSCS
T ss_pred CCCHHHHHHHHHhcCCcccCCCceEeCccc-hhcCCccEEEEcC-CcCcCCcccHHHc-----CCeEEEeCCcccc
Confidence 244322 12221111111110000011112 2345778888766 4677787777766 2456666666 54
No 29
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=95.43 E-value=0.038 Score=57.06 Aligned_cols=130 Identities=19% Similarity=0.176 Sum_probs=87.9
Q ss_pred HHHHHHHHHhC--Cce---eeecccCCCchHHHHHHHHh--ccCCccccC--------cchhHHHHHHHHHHHHHHhCCC
Q 040403 267 DEFMEAIFTRW--PNV---IVQFEDFQSKWAFKLLQRYR--YKYRMFNDD--------VQGTAGVAVAGLLGAVRAQGRS 331 (623)
Q Consensus 267 defv~av~~~~--P~~---lIqfEDf~~~nAf~lL~ryr--~~~~~FNDD--------iQGTaaV~lAgll~A~r~~g~~ 331 (623)
+|+.+.+.+.. |++ ++|+==...-+..++++.-. +.+=.||.- ..+-.-+|-.|++..++-.+.+
T Consensus 79 ~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~p~KDVDG~~~~N~g~l~~g~~~~~PcTp~gv~~lL~~~~i~ 158 (286)
T 4a5o_A 79 DDLLALIDRLNDDPAIDGILVQLPLPAHLDASLLLERIHPDKDVDGFHPYNIGRLAQRMPLLRPCTPKGIMTLLASTGAD 158 (286)
T ss_dssp HHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHTSCGGGCTTCCSHHHHHHHHTTCCSSCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCCCCCEEEEcCCCCCCcCHHHHHhhCCcccccccCChhhhHHHhcCCCCCCCCCHHHHHHHHHHhCCC
Confidence 67777777665 553 66764333334444444321 122222211 1223446778889999999999
Q ss_pred CCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcc
Q 040403 332 MIDFPKQKIVVAGAGS-AGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISR 410 (623)
Q Consensus 332 ~~~l~d~riv~~GAGs-Ag~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~ 410 (623)
|++.++|++|+|. .|..+|.+|... |. .+.+++++
T Consensus 159 ---l~Gk~vvVvGrs~iVG~plA~lL~~~-----gA----------tVtv~hs~-------------------------- 194 (286)
T 4a5o_A 159 ---LYGMDAVVVGASNIVGRPMALELLLG-----GC----------TVTVTHRF-------------------------- 194 (286)
T ss_dssp ---CTTCEEEEECTTSTTHHHHHHHHHHT-----TC----------EEEEECTT--------------------------
T ss_pred ---CCCCEEEEECCCchhHHHHHHHHHHC-----CC----------eEEEEeCC--------------------------
Confidence 9999999999875 899999988763 63 46666542
Q ss_pred cccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHH
Q 040403 411 QGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLE 447 (623)
Q Consensus 411 ~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 447 (623)
..+|.+.++ ++|++|+..+.++.++.++|+
T Consensus 195 -----T~~L~~~~~--~ADIVI~Avg~p~~I~~~~vk 224 (286)
T 4a5o_A 195 -----TRDLADHVS--RADLVVVAAGKPGLVKGEWIK 224 (286)
T ss_dssp -----CSCHHHHHH--TCSEEEECCCCTTCBCGGGSC
T ss_pred -----CcCHHHHhc--cCCEEEECCCCCCCCCHHHcC
Confidence 113778888 899999999999999997764
No 30
>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3
Probab=95.30 E-value=0.17 Score=55.47 Aligned_cols=124 Identities=22% Similarity=0.290 Sum_probs=89.7
Q ss_pred cCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcc
Q 040403 308 DDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLI 387 (623)
Q Consensus 308 DDiQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi 387 (623)
+.+.|+......|+ .+.+|.. +.+.+++|+|.|..|.++|+.+... |+ +++.+|++
T Consensus 234 r~~~~~~~~l~~gw---~r~~~~~---l~GktVgIIG~G~IG~~vA~~l~~~-----G~----------~Viv~d~~--- 289 (479)
T 1v8b_A 234 DNVYGCRHSLPDGL---MRATDFL---ISGKIVVICGYGDVGKGCASSMKGL-----GA----------RVYITEID--- 289 (479)
T ss_dssp HHHHHHHHHHHHHH---HHHHCCC---CTTSEEEEECCSHHHHHHHHHHHHH-----TC----------EEEEECSC---
T ss_pred hchHhHHHHHhhhh---hhccccc---cCCCEEEEEeeCHHHHHHHHHHHhC-----cC----------EEEEEeCC---
Confidence 34455555555663 2567777 9999999999999999999998765 73 58888874
Q ss_pred cCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCC
Q 040403 388 TEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTN 467 (623)
Q Consensus 388 ~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~ 467 (623)
..+..-+. .. .-...+|.|+++ +.|++|.+....+.++++.++.| .+.-||.=.+.-.
T Consensus 290 --------~~~~~~a~--~~-----g~~~~~l~ell~--~aDiVi~~~~t~~lI~~~~l~~M----K~gailiNvgrg~- 347 (479)
T 1v8b_A 290 --------PICAIQAV--ME-----GFNVVTLDEIVD--KGDFFITCTGNVDVIKLEHLLKM----KNNAVVGNIGHFD- 347 (479)
T ss_dssp --------HHHHHHHH--TT-----TCEECCHHHHTT--TCSEEEECCSSSSSBCHHHHTTC----CTTCEEEECSSTT-
T ss_pred --------hhhHHHHH--Hc-----CCEecCHHHHHh--cCCEEEECCChhhhcCHHHHhhc----CCCcEEEEeCCCC-
Confidence 11111111 11 112357999998 89999999888899999999999 5677888777754
Q ss_pred CCCCCHHHHhc
Q 040403 468 NAECTPEEAFS 478 (623)
Q Consensus 468 ~~E~tpeda~~ 478 (623)
.|+.-++..+
T Consensus 348 -~EId~~aL~~ 357 (479)
T 1v8b_A 348 -DEIQVNELFN 357 (479)
T ss_dssp -TSBCHHHHHT
T ss_pred -ccccchhhhc
Confidence 6777777666
No 31
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=95.25 E-value=0.03 Score=57.83 Aligned_cols=130 Identities=18% Similarity=0.126 Sum_probs=89.3
Q ss_pred HHHHHHHHHhC--Cce---eeecccCCCchHHHHHHHHhc--cCCcccc--------CcchhHHHHHHHHHHHHHHhCCC
Q 040403 267 DEFMEAIFTRW--PNV---IVQFEDFQSKWAFKLLQRYRY--KYRMFND--------DVQGTAGVAVAGLLGAVRAQGRS 331 (623)
Q Consensus 267 defv~av~~~~--P~~---lIqfEDf~~~nAf~lL~ryr~--~~~~FND--------DiQGTaaV~lAgll~A~r~~g~~ 331 (623)
+|+.+.+.++- |++ ++|+==.+.-+..++++.-.- .+=.||. ...+-.-+|-.|++-.++..+.+
T Consensus 77 ~ell~~I~~lN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDG~~p~n~g~l~~g~~~~~PcTp~gi~~ll~~~~i~ 156 (288)
T 1b0a_A 77 AELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERYNID 156 (288)
T ss_dssp HHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHTTSCTTTCTTCCSHHHHHHHHTTCCSSCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhccCCccCcccCCccchhHHhCCCCCCCCCcHHHHHHHHHHcCCC
Confidence 56666666665 653 777744444445555443321 1111221 11244566778899999999999
Q ss_pred CCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcc
Q 040403 332 MIDFPKQKIVVAGAGS-AGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISR 410 (623)
Q Consensus 332 ~~~l~d~riv~~GAGs-Ag~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~ 410 (623)
++..++||+|+|. .|.-+|.++... | .++.+++++
T Consensus 157 ---l~gk~vvVIG~s~iVG~p~A~lL~~~-----g----------AtVtv~hs~-------------------------- 192 (288)
T 1b0a_A 157 ---TFGLNAVVIGASNIVGRPMSMELLLA-----G----------CTTTVTHRF-------------------------- 192 (288)
T ss_dssp ---CTTCEEEEECCCTTTHHHHHHHHHTT-----T----------CEEEEECSS--------------------------
T ss_pred ---CCCCEEEEECCChHHHHHHHHHHHHC-----C----------CeEEEEeCC--------------------------
Confidence 9999999999995 699998887753 5 457777642
Q ss_pred cccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHH
Q 040403 411 QGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLE 447 (623)
Q Consensus 411 ~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 447 (623)
..+|.+.++ ++|++|+..+.++.+|+++|+
T Consensus 193 -----t~~L~~~~~--~ADIVI~Avg~p~lI~~~~vk 222 (288)
T 1b0a_A 193 -----TKNLRHHVE--NADLLIVAVGKPGFIPGDWIK 222 (288)
T ss_dssp -----CSCHHHHHH--HCSEEEECSCCTTCBCTTTSC
T ss_pred -----chhHHHHhc--cCCEEEECCCCcCcCCHHHcC
Confidence 124778888 899999999999999987763
No 32
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=95.11 E-value=0.11 Score=52.58 Aligned_cols=110 Identities=14% Similarity=0.192 Sum_probs=73.5
Q ss_pred HHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHH
Q 040403 325 VRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARK 404 (623)
Q Consensus 325 ~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~ 404 (623)
++..+.. |.+.+++|+|+|..|..+|+.+... |. +++.+|+.- .+...+..
T Consensus 148 ~~~~~~~---l~g~~v~IiG~G~iG~~~a~~l~~~-----G~----------~V~~~d~~~-----------~~~~~~~~ 198 (300)
T 2rir_A 148 IQHTDYT---IHGSQVAVLGLGRTGMTIARTFAAL-----GA----------NVKVGARSS-----------AHLARITE 198 (300)
T ss_dssp HHTCSSC---STTSEEEEECCSHHHHHHHHHHHHT-----TC----------EEEEEESSH-----------HHHHHHHH
T ss_pred HHhcCCC---CCCCEEEEEcccHHHHHHHHHHHHC-----CC----------EEEEEECCH-----------HHHHHHHH
Confidence 3456677 9999999999999999999988753 73 588888741 11111110
Q ss_pred hhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHH
Q 040403 405 VNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEA 476 (623)
Q Consensus 405 ~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda 476 (623)
.... .....+|.++++ +.|++|-+. ..+.++++.++.| .+..+|+=+|.-. .+|..+.+
T Consensus 199 -~g~~---~~~~~~l~~~l~--~aDvVi~~~-p~~~i~~~~~~~m----k~g~~lin~a~g~--~~~~~~~a 257 (300)
T 2rir_A 199 -MGLV---PFHTDELKEHVK--DIDICINTI-PSMILNQTVLSSM----TPKTLILDLASRP--GGTDFKYA 257 (300)
T ss_dssp -TTCE---EEEGGGHHHHST--TCSEEEECC-SSCCBCHHHHTTS----CTTCEEEECSSTT--CSBCHHHH
T ss_pred -CCCe---EEchhhHHHHhh--CCCEEEECC-ChhhhCHHHHHhC----CCCCEEEEEeCCC--CCcCHHHH
Confidence 0000 001246888887 899999766 4589999999999 5677888888632 24545443
No 33
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1
Probab=94.99 E-value=0.37 Score=50.98 Aligned_cols=138 Identities=21% Similarity=0.288 Sum_probs=78.6
Q ss_pred chHHHHHHHHhccCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcc
Q 040403 290 KWAFKLLQRYRYKYRMFNDDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNES 369 (623)
Q Consensus 290 ~nAf~lL~ryr~~~~~FNDDiQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~ 369 (623)
..++.+-++.+....+.. ++..++.+++--+-+..+ + +.+.+|+|+|+|..|..++..+... |.
T Consensus 128 ~~a~~~~k~v~~~~~~~~----~~~s~a~~av~~a~~~~~-~---l~g~~VlIiGaG~iG~~~a~~l~~~-----G~--- 191 (404)
T 1gpj_A 128 RRAINLGKRAREETRISE----GAVSIGSAAVELAERELG-S---LHDKTVLVVGAGEMGKTVAKSLVDR-----GV--- 191 (404)
T ss_dssp HHHHHHHHHHHHHSSTTC----SCCSHHHHHHHHHHHHHS-C---CTTCEEEEESCCHHHHHHHHHHHHH-----CC---
T ss_pred HHHhhhhccCcchhhhcC----CCccHHHHHHHHHHHHhc-c---ccCCEEEEEChHHHHHHHHHHHHHC-----CC---
Confidence 346777777665432221 222233333222222333 4 6789999999999999998887764 84
Q ss_pred hhhhccCeEEEEccCCcccCCCCCCChhh-HHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCC-CCCCHHHHH
Q 040403 370 AFDSARSQFWVVDAKGLITEDRENIDPDA-KPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVG-GLFSKEVLE 447 (623)
Q Consensus 370 ~~eeA~~~i~lvD~~GLi~~~r~~l~~~~-~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~-g~Ft~evv~ 447 (623)
++|+++|+. ..+ ..+|+.-.. . .-...++.+.++ +.|++|-+++.+ ..++++.++
T Consensus 192 ------~~V~v~~r~-----------~~ra~~la~~~g~-~---~~~~~~l~~~l~--~aDvVi~at~~~~~~~~~~~l~ 248 (404)
T 1gpj_A 192 ------RAVLVANRT-----------YERAVELARDLGG-E---AVRFDELVDHLA--RSDVVVSATAAPHPVIHVDDVR 248 (404)
T ss_dssp ------SEEEEECSS-----------HHHHHHHHHHHTC-E---ECCGGGHHHHHH--TCSEEEECCSSSSCCBCHHHHH
T ss_pred ------CEEEEEeCC-----------HHHHHHHHHHcCC-c---eecHHhHHHHhc--CCCEEEEccCCCCceecHHHHH
Confidence 578988873 222 245532100 0 011235788887 899999876644 345778888
Q ss_pred H--cccCCCCCCEEEecCCCC
Q 040403 448 A--MRGSTSTRPAIFAMSNPT 466 (623)
Q Consensus 448 ~--M~a~~~erPIIFaLSNPt 466 (623)
. ||.+...+-+++-++.|.
T Consensus 249 ~~~lk~r~~~~~v~vdia~P~ 269 (404)
T 1gpj_A 249 EALRKRDRRSPILIIDIANPR 269 (404)
T ss_dssp HHHHHCSSCCCEEEEECCSSC
T ss_pred HHHHhccCCCCEEEEEccCCC
Confidence 7 532223334555555543
No 34
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*
Probab=94.88 E-value=0.15 Score=56.25 Aligned_cols=110 Identities=20% Similarity=0.278 Sum_probs=79.1
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCC
Q 040403 312 GTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDR 391 (623)
Q Consensus 312 GTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r 391 (623)
|+......|+ .+.+|.. +.+.+++|+|.|..|.++|+.+... |+ +++.+|++.
T Consensus 258 ~~~~~l~~gw---~~~~g~~---L~GktVgIIG~G~IG~~vA~~l~~~-----G~----------~V~v~d~~~------ 310 (494)
T 3d64_A 258 GCRESLVDGI---KRATDVM---IAGKIAVVAGYGDVGKGCAQSLRGL-----GA----------TVWVTEIDP------ 310 (494)
T ss_dssp HHHTTHHHHH---HHHHCCC---CTTCEEEEECCSHHHHHHHHHHHTT-----TC----------EEEEECSCH------
T ss_pred hhhhhhhhhh---hhccccc---cCCCEEEEEccCHHHHHHHHHHHHC-----CC----------EEEEEeCCh------
Confidence 3333344552 3567888 9999999999999999999988753 63 588888741
Q ss_pred CCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCC
Q 040403 392 ENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPT 466 (623)
Q Consensus 392 ~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt 466 (623)
.+..-+. .. .-...+|.|+++ +.|++|.+....+.++++.++.| .+.-||.=.+...
T Consensus 311 -----~~~~~a~--~~-----G~~~~~l~ell~--~aDiVi~~~~t~~lI~~~~l~~M----K~gAilINvgrg~ 367 (494)
T 3d64_A 311 -----ICALQAA--ME-----GYRVVTMEYAAD--KADIFVTATGNYHVINHDHMKAM----RHNAIVCNIGHFD 367 (494)
T ss_dssp -----HHHHHHH--TT-----TCEECCHHHHTT--TCSEEEECSSSSCSBCHHHHHHC----CTTEEEEECSSSS
T ss_pred -----HhHHHHH--Hc-----CCEeCCHHHHHh--cCCEEEECCCcccccCHHHHhhC----CCCcEEEEcCCCc
Confidence 1110111 11 112347999999 89999998877899999999999 5677888777754
No 35
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Probab=94.74 E-value=0.11 Score=52.92 Aligned_cols=91 Identities=20% Similarity=0.284 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChh
Q 040403 318 VAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPD 397 (623)
Q Consensus 318 lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~ 397 (623)
-.|++.+++-.+.. +++.+++|+|||.+|.+++..|... |. ++|+++|+. .+.
T Consensus 111 ~~G~~~~l~~~~~~---l~~k~vlVlGaGG~g~aia~~L~~~-----G~---------~~v~i~~R~----------~~~ 163 (283)
T 3jyo_A 111 VSGFGRGMEEGLPN---AKLDSVVQVGAGGVGNAVAYALVTH-----GV---------QKLQVADLD----------TSR 163 (283)
T ss_dssp HHHHHHHHHHHCTT---CCCSEEEEECCSHHHHHHHHHHHHT-----TC---------SEEEEECSS----------HHH
T ss_pred HHHHHHHHHHhCcC---cCCCEEEEECCcHHHHHHHHHHHHC-----CC---------CEEEEEECC----------HHH
Confidence 35777888888877 9999999999997777776666553 74 579988874 111
Q ss_pred hHHhHHHhhh-hcccc--cCCCCCHHHHHhhcCCcEEEeccCC
Q 040403 398 AKPFARKVNE-ISRQG--LWEGASLVEVVQQVKPDVLLGLSAV 437 (623)
Q Consensus 398 ~~~fA~~~~~-~~~~~--~~~~~~L~e~V~~vkptvLIG~S~~ 437 (623)
.+.+++.-.. ..... .....+|.++++ ++|++|-++..
T Consensus 164 a~~la~~~~~~~~~~~i~~~~~~~l~~~l~--~~DiVInaTp~ 204 (283)
T 3jyo_A 164 AQALADVINNAVGREAVVGVDARGIEDVIA--AADGVVNATPM 204 (283)
T ss_dssp HHHHHHHHHHHHTSCCEEEECSTTHHHHHH--HSSEEEECSST
T ss_pred HHHHHHHHHhhcCCceEEEcCHHHHHHHHh--cCCEEEECCCC
Confidence 1233321111 00000 012246888888 78999987743
No 36
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A
Probab=94.67 E-value=0.18 Score=52.60 Aligned_cols=98 Identities=20% Similarity=0.297 Sum_probs=63.6
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHh--hhhcccc
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKV--NEISRQG 412 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~--~~~~~~~ 412 (623)
++..+++|+|||.+|.+++..+... |. +++++|+. +.+...++.. ..... .
T Consensus 165 l~~~~VlViGaGgvG~~aa~~a~~~-----Ga----------~V~v~dr~-----------~~r~~~~~~~~~~~~~~-~ 217 (361)
T 1pjc_A 165 VKPGKVVILGGGVVGTEAAKMAVGL-----GA----------QVQIFDIN-----------VERLSYLETLFGSRVEL-L 217 (361)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHT-----TC----------EEEEEESC-----------HHHHHHHHHHHGGGSEE-E
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhC-----CC----------EEEEEeCC-----------HHHHHHHHHhhCceeEe-e
Confidence 5668999999999999998887763 72 58888874 2222222211 00000 0
Q ss_pred cCCCCCHHHHHhhcCCcEEEeccCCCCC-----CCHHHHHHcccCCCCCCEEEecCCC
Q 040403 413 LWEGASLVEVVQQVKPDVLLGLSAVGGL-----FSKEVLEAMRGSTSTRPAIFAMSNP 465 (623)
Q Consensus 413 ~~~~~~L~e~V~~vkptvLIG~S~~~g~-----Ft~evv~~M~a~~~erPIIFaLSNP 465 (623)
.....++.+.++ +.|++|.+.+.++. ++++.++.| .+.-+|+-++.+
T Consensus 218 ~~~~~~~~~~~~--~~DvVI~~~~~~~~~~~~li~~~~~~~~----~~g~~ivdv~~~ 269 (361)
T 1pjc_A 218 YSNSAEIETAVA--EADLLIGAVLVPGRRAPILVPASLVEQM----RTGSVIVDVAVD 269 (361)
T ss_dssp ECCHHHHHHHHH--TCSEEEECCCCTTSSCCCCBCHHHHTTS----CTTCEEEETTCT
T ss_pred eCCHHHHHHHHc--CCCEEEECCCcCCCCCCeecCHHHHhhC----CCCCEEEEEecC
Confidence 001124667777 79999998876653 588999999 455677777754
No 37
>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*
Probab=94.39 E-value=0.51 Score=51.92 Aligned_cols=109 Identities=17% Similarity=0.216 Sum_probs=78.9
Q ss_pred HHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHh
Q 040403 326 RAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKV 405 (623)
Q Consensus 326 r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~ 405 (623)
|..+.. +.+.+|+|+|+|..|.++|+.+... |. +++.+|++ +.+...|+.
T Consensus 266 r~~~~~---l~GktV~IiG~G~IG~~~A~~lka~-----Ga----------~Viv~d~~-----------~~~~~~A~~- 315 (494)
T 3ce6_A 266 RGTDAL---IGGKKVLICGYGDVGKGCAEAMKGQ-----GA----------RVSVTEID-----------PINALQAMM- 315 (494)
T ss_dssp HHHCCC---CTTCEEEEECCSHHHHHHHHHHHHT-----TC----------EEEEECSC-----------HHHHHHHHH-
T ss_pred hccCCC---CCcCEEEEEccCHHHHHHHHHHHHC-----CC----------EEEEEeCC-----------HHHHHHHHH-
Confidence 445656 8899999999999999999887753 72 58888873 333334432
Q ss_pred hhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhc
Q 040403 406 NEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFS 478 (623)
Q Consensus 406 ~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~ 478 (623)
. .-...++.|+++ +.|++|-+.+..+.++++.++.| .+.-+|.-.+... .|+..+..+.
T Consensus 316 -~-----Ga~~~~l~e~l~--~aDvVi~atgt~~~i~~~~l~~m----k~ggilvnvG~~~--~eId~~aL~~ 374 (494)
T 3ce6_A 316 -E-----GFDVVTVEEAIG--DADIVVTATGNKDIIMLEHIKAM----KDHAILGNIGHFD--NEIDMAGLER 374 (494)
T ss_dssp -T-----TCEECCHHHHGG--GCSEEEECSSSSCSBCHHHHHHS----CTTCEEEECSSSG--GGBCHHHHHH
T ss_pred -c-----CCEEecHHHHHh--CCCEEEECCCCHHHHHHHHHHhc----CCCcEEEEeCCCC--CccCHHHHHH
Confidence 1 112356888887 79999999888899999999999 5667887777765 3666655543
No 38
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=94.27 E-value=0.21 Score=51.37 Aligned_cols=143 Identities=15% Similarity=0.161 Sum_probs=95.9
Q ss_pred HHHHHHHHHhC--Cce---eeecccCCCchHHHHHHHHh--ccCCccccC--------cchhHHHHHHHHHHHHHHhCCC
Q 040403 267 DEFMEAIFTRW--PNV---IVQFEDFQSKWAFKLLQRYR--YKYRMFNDD--------VQGTAGVAVAGLLGAVRAQGRS 331 (623)
Q Consensus 267 defv~av~~~~--P~~---lIqfEDf~~~nAf~lL~ryr--~~~~~FNDD--------iQGTaaV~lAgll~A~r~~g~~ 331 (623)
+|+.+.+.++- |++ ++|+==.+.-+..++++.-. +.+=.||.- ..+-.-+|-.|++-.++..+.+
T Consensus 76 ~ell~~i~~lN~D~~v~GIlvqlPlP~~id~~~i~~~I~p~KDVDG~~p~n~g~l~~g~~~~~PcTp~gi~~ll~~~~i~ 155 (281)
T 2c2x_A 76 ATLNETIDELNANPDCTGYIVQLPLPKHLDENAALERVDPAKDADGLHPTNLGRLVLGTPAPLPCTPRGIVHLLRRYDIS 155 (281)
T ss_dssp HHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHHHHHSCGGGBTTSCCHHHHHHHHHTCCCCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCCCCCHHHHHhhcCccCCccCCChhhHHHHhCCCCCCCCChHHHHHHHHHHcCCC
Confidence 56666666665 653 88875555556666666542 122222211 1244556777888888999988
Q ss_pred CCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcc
Q 040403 332 MIDFPKQKIVVAGAGS-AGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISR 410 (623)
Q Consensus 332 ~~~l~d~riv~~GAGs-Ag~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~ 410 (623)
++..++||+|+|. .|.-+|.++.. .|. -.++++++++
T Consensus 156 ---l~gk~vvVvG~s~iVG~p~A~lL~~-----~g~--------~atVtv~h~~-------------------------- 193 (281)
T 2c2x_A 156 ---IAGAHVVVIGRGVTVGRPLGLLLTR-----RSE--------NATVTLCHTG-------------------------- 193 (281)
T ss_dssp ---CTTCEEEEECCCTTTHHHHHHHHTS-----TTT--------CCEEEEECTT--------------------------
T ss_pred ---CCCCEEEEECCCcHHHHHHHHHHhc-----CCC--------CCEEEEEECc--------------------------
Confidence 9999999999996 58888777754 120 1457777542
Q ss_pred cccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCC
Q 040403 411 QGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNP 465 (623)
Q Consensus 411 ~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNP 465 (623)
..+|.+.++ ++|++|+..+.++.+|+++|+. .-+|+=++-|
T Consensus 194 -----t~~L~~~~~--~ADIVI~Avg~p~~I~~~~vk~-------GavVIDVgi~ 234 (281)
T 2c2x_A 194 -----TRDLPALTR--QADIVVAAVGVAHLLTADMVRP-------GAAVIDVGVS 234 (281)
T ss_dssp -----CSCHHHHHT--TCSEEEECSCCTTCBCGGGSCT-------TCEEEECCEE
T ss_pred -----hhHHHHHHh--hCCEEEECCCCCcccCHHHcCC-------CcEEEEccCC
Confidence 124788888 8999999999999999988642 3466666654
No 39
>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A
Probab=93.94 E-value=2.1 Score=46.25 Aligned_cols=184 Identities=16% Similarity=0.156 Sum_probs=118.8
Q ss_pred CchhhhHhHHHHHHHHHHhC-CceeeecccCCCch--HHHHHHHHhc---c--CCcccc----------CcchhHHHHHH
Q 040403 258 DGDEYVSVIDEFMEAIFTRW-PNVIVQFEDFQSKW--AFKLLQRYRY---K--YRMFND----------DVQGTAGVAVA 319 (623)
Q Consensus 258 ~g~~Y~~~vdefv~av~~~~-P~~lIqfEDf~~~n--Af~lL~ryr~---~--~~~FND----------DiQGTaaV~lA 319 (623)
+.+|-..|...|+.++...- |+.-|-=+|++..- ---+.+.|+. . ..++-- --.-||-=+.-
T Consensus 115 s~~e~~r~~r~f~~~l~~~ig~~~dvpa~D~gt~~~~m~~~~~~y~~~~~~~~~~~~tGk~~~~GGs~~r~~aTg~Gv~~ 194 (415)
T 2tmg_A 115 SRRELERLSRRFFREIQVIIGPYNDIPAPDVNTNADVIAWYMDEYEMNVGHTVLGIVTGKPVELGGSKGREEATGRGVKV 194 (415)
T ss_dssp CHHHHHHHHHHHHHHTGGGCBTTTEECCBCTTCCHHHHHHHHHHHHHHHSSCCCCSCSSCCGGGTCCTTTTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCcEEeCCCCCCCHHHHHHHHHHHHHhhCCCCCCeEecCchhhCCCCCcCcchHHHHHH
Confidence 44567778899999998877 88778889998752 2224456633 1 123322 22346666666
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHH-HHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhh
Q 040403 320 GLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARK-TMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDA 398 (623)
Q Consensus 320 gll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~-~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~ 398 (623)
++-.+++..|.+ +++.||+|.|.|..|...|++|.+ . |. +=+-+.|++|-+++.. .|+...
T Consensus 195 ~~~~~~~~~g~~---l~g~~vaVqG~GnVG~~~a~~L~e~~-----Ga---------kvVavsD~~G~i~dp~-Gld~~~ 256 (415)
T 2tmg_A 195 CAGLAMDVLGID---PKKATVAVQGFGNVGQFAALLISQEL-----GS---------KVVAVSDSRGGIYNPE-GFDVEE 256 (415)
T ss_dssp HHHHHHHHTTCC---TTTCEEEEECCSHHHHHHHHHHHHTT-----CC---------EEEEEECSSCEEECTT-CCCHHH
T ss_pred HHHHHHHHcCCC---cCCCEEEEECCcHHHHHHHHHHHHhc-----CC---------EEEEEEeCCCeEECCC-CCCHHH
Confidence 777888889998 999999999999999999988876 3 63 2244899999988754 244322
Q ss_pred -HHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCC-CC
Q 040403 399 -KPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSN-PT 466 (623)
Q Consensus 399 -~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSN-Pt 466 (623)
+.+......+.++......+-.+ +-.++.|+||=+. .++..|++-.+.+ .-.+|.--+| |+
T Consensus 257 l~~~~~~~g~l~~y~~a~~~~~~e-il~~~~DIliP~A-~~n~i~~~~a~~l-----~ak~V~EgAN~p~ 319 (415)
T 2tmg_A 257 LIRYKKEHGTVVTYPKGERITNEE-LLELDVDILVPAA-LEGAIHAGNAERI-----KAKAVVEGANGPT 319 (415)
T ss_dssp HHHHHHHSSCSTTCSSSEEECHHH-HTTCSCSEEEECS-STTSBCHHHHTTC-----CCSEEECCSSSCB
T ss_pred HHHHHHhhCCcccCCCceEcCchh-hhcCCCcEEEecC-CcCccCcccHHHc-----CCeEEEeCCCccc
Confidence 22322111111110001112334 4567899999777 4688888888877 3457777777 55
No 40
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}
Probab=93.85 E-value=0.9 Score=48.36 Aligned_cols=141 Identities=18% Similarity=0.136 Sum_probs=98.2
Q ss_pred CCce-eeecccCCCchHHHHHHHHhccCCccccCcc---hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHH
Q 040403 277 WPNV-IVQFEDFQSKWAFKLLQRYRYKYRMFNDDVQ---GTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGV 352 (623)
Q Consensus 277 ~P~~-lIqfEDf~~~nAf~lL~ryr~~~~~FNDDiQ---GTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GI 352 (623)
.|+. .|+.-..+..|- .+-.--+..+.+.|.--- .+|=-+++.+|+..|-.|.. |.+.+|.|+|.|..|-.+
T Consensus 56 ~~~Lk~I~~~~~G~D~i-D~~~~~~~gI~v~n~pg~~~~~vAE~~l~~lL~l~r~~~~~---l~g~tvGIIGlG~IG~~v 131 (380)
T 2o4c_A 56 GSPVRFVGTCTIGTDHL-DLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEVRGAD---LAERTYGVVGAGQVGGRL 131 (380)
T ss_dssp TSCCCEEEECSSCSTTB-CHHHHHHHTCEEECCTTTTHHHHHHHHHHHHHHHHHHHTCC---GGGCEEEEECCSHHHHHH
T ss_pred CCCceEEEEcCcccchh-hHHHHHhCCCEEEeCCCcChHHHHHHHHHHHHHHHhhhhcc---cCCCEEEEEeCCHHHHHH
Confidence 4775 777777776662 221111235888885433 34445899999999999988 999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEE
Q 040403 353 LNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLL 432 (623)
Q Consensus 353 A~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLI 432 (623)
|+.+... |+ +++.+|+..- .. .. .....+|.|+++ +.|+++
T Consensus 132 A~~l~~~-----G~----------~V~~~d~~~~-----------~~------~~-----g~~~~~l~ell~--~aDvV~ 172 (380)
T 2o4c_A 132 VEVLRGL-----GW----------KVLVCDPPRQ-----------AR------EP-----DGEFVSLERLLA--EADVIS 172 (380)
T ss_dssp HHHHHHT-----TC----------EEEEECHHHH-----------HH------ST-----TSCCCCHHHHHH--HCSEEE
T ss_pred HHHHHHC-----CC----------EEEEEcCChh-----------hh------cc-----CcccCCHHHHHH--hCCEEE
Confidence 9988764 74 5777876310 00 01 112457999998 789888
Q ss_pred ecc---C-----CCCCCCHHHHHHcccCCCCCCEEEecCC
Q 040403 433 GLS---A-----VGGLFSKEVLEAMRGSTSTRPAIFAMSN 464 (623)
Q Consensus 433 G~S---~-----~~g~Ft~evv~~M~a~~~erPIIFaLSN 464 (623)
=.- . ..+.|+++.++.| .+..++.=.|.
T Consensus 173 l~~Plt~~g~~~T~~li~~~~l~~m----k~gailIN~sR 208 (380)
T 2o4c_A 173 LHTPLNRDGEHPTRHLLDEPRLAAL----RPGTWLVNASR 208 (380)
T ss_dssp ECCCCCSSSSSCCTTSBCHHHHHTS----CTTEEEEECSC
T ss_pred EeccCccccccchhhhcCHHHHhhC----CCCcEEEECCC
Confidence 532 1 3478999999999 56678877775
No 41
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A 3adp_A* 3f3s_A*
Probab=93.82 E-value=0.67 Score=47.81 Aligned_cols=132 Identities=11% Similarity=0.131 Sum_probs=70.2
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhc--cc---
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEIS--RQ--- 411 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~--~~--- 411 (623)
-.||.|+|+|.-|.+||..+..+ |. +++++|++-= .+...+....+.-..+. +.
T Consensus 6 ~~kI~vIGaG~MG~~iA~~la~~-----G~----------~V~l~d~~~~------~~~~~~~~i~~~l~~l~~~G~~~g 64 (319)
T 2dpo_A 6 AGDVLIVGSGLVGRSWAMLFASG-----GF----------RVKLYDIEPR------QITGALENIRKEMKSLQQSGSLKG 64 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHT-----TC----------CEEEECSCHH------HHHHHHHHHHHHHHHHHHTTCCCS
T ss_pred CceEEEEeeCHHHHHHHHHHHHC-----CC----------EEEEEeCCHH------HHHHHHHHHHHHHHHHHHcCcccc
Confidence 46899999999999999999875 74 4778887410 01111110000000000 00
Q ss_pred ---------ccCCCCCHHHHHhhcCCcEEEeccCCCC-CCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccC
Q 040403 412 ---------GLWEGASLVEVVQQVKPDVLLGLSAVGG-LFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVG 481 (623)
Q Consensus 412 ---------~~~~~~~L~e~V~~vkptvLIG~S~~~g-~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~ 481 (623)
......++.|+++ +.|++|= +.... .+.+++++.+ ..+...-.|++ ||=++ .++.+..+...
T Consensus 65 ~~~~~~~~~~i~~~~~~~eav~--~aDlVie-avpe~~~~k~~v~~~l-~~~~~~~~Ii~-s~tS~---i~~~~la~~~~ 136 (319)
T 2dpo_A 65 SLSAEEQLSLISSCTNLAEAVE--GVVHIQE-CVPENLDLKRKIFAQL-DSIVDDRVVLS-SSSSC---LLPSKLFTGLA 136 (319)
T ss_dssp SSCHHHHHHTEEEECCHHHHTT--TEEEEEE-CCCSCHHHHHHHHHHH-HTTCCSSSEEE-ECCSS---CCHHHHHTTCT
T ss_pred ccchHHHhhceEEeCCHHHHHh--cCCEEEE-eccCCHHHHHHHHHHH-HhhCCCCeEEE-EeCCC---hHHHHHHHhcC
Confidence 0112468999998 7898883 32222 2456777777 55554434443 44332 44555555543
Q ss_pred CcEEEecCCCCCcccc
Q 040403 482 DNIIFASGSPFKDVDL 497 (623)
Q Consensus 482 Grai~AtGsPF~pv~~ 497 (623)
...=|.-+-||.|+.+
T Consensus 137 ~~~r~ig~Hp~~P~~~ 152 (319)
T 2dpo_A 137 HVKQCIVAHPVNPPYY 152 (319)
T ss_dssp TGGGEEEEEECSSTTT
T ss_pred CCCCeEEeecCCchhh
Confidence 2212233448877744
No 42
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=93.72 E-value=0.13 Score=52.79 Aligned_cols=127 Identities=6% Similarity=0.108 Sum_probs=88.1
Q ss_pred HHHHHHHHHhC--Cce---eeecccCCCchHHHHHHHHh--ccCCccccCc--------chhHHHHHHHHHHHHHHhCCC
Q 040403 267 DEFMEAIFTRW--PNV---IVQFEDFQSKWAFKLLQRYR--YKYRMFNDDV--------QGTAGVAVAGLLGAVRAQGRS 331 (623)
Q Consensus 267 defv~av~~~~--P~~---lIqfEDf~~~nAf~lL~ryr--~~~~~FNDDi--------QGTaaV~lAgll~A~r~~g~~ 331 (623)
+|+.+.++++. |++ ++|+==.+.-+..++++.-. +.+=.||.-- .+-.-+|-.|++..++..+
T Consensus 70 ~ell~~I~~lN~D~~v~GIlvqlPLP~~id~~~v~~~I~p~KDVDG~~p~n~G~l~~g~~~~~PcTp~gv~~lL~~~~-- 147 (276)
T 3ngx_A 70 KDLLKRIDDLAKDPQINGIMIENPLPKGFDYYEIVRNIPYYKDVDALSPYNQGLIALNREFLVPATPRAVIDIMDYYG-- 147 (276)
T ss_dssp HHHHHHHHHHHHCTTCCEEEECSCCCTTCCHHHHHTTSCGGGBTTCCSHHHHHHHHTTCCSSCCHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHcCCCCCcEEEEeCCCCCCCCHHHHHhhCCCCCcccCCCccchhhhhcCCCCCCCCcHHHHHHHHHHhC--
Confidence 67777777766 653 77765444445555555432 2233333221 2334567788899999887
Q ss_pred CCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcc
Q 040403 332 MIDFPKQKIVVAGAG-SAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISR 410 (623)
Q Consensus 332 ~~~l~d~riv~~GAG-sAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~ 410 (623)
|++.++||+|+| ..|..+|.++... |. .+.+++++
T Consensus 148 ---l~Gk~vvVvG~s~iVG~plA~lL~~~-----gA----------tVtv~~~~-------------------------- 183 (276)
T 3ngx_A 148 ---YHENTVTIVNRSPVVGRPLSMMLLNR-----NY----------TVSVCHSK-------------------------- 183 (276)
T ss_dssp ---CCSCEEEEECCCTTTHHHHHHHHHHT-----TC----------EEEEECTT--------------------------
T ss_pred ---cCCCEEEEEcCChHHHHHHHHHHHHC-----CC----------eEEEEeCC--------------------------
Confidence 689999999998 4899999998763 63 47777652
Q ss_pred cccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHH
Q 040403 411 QGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVL 446 (623)
Q Consensus 411 ~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv 446 (623)
..+|.+.++ ++|++|++.+.++.++++++
T Consensus 184 -----t~~L~~~~~--~ADIVI~Avg~p~~I~~~~v 212 (276)
T 3ngx_A 184 -----TKDIGSMTR--SSKIVVVAVGRPGFLNREMV 212 (276)
T ss_dssp -----CSCHHHHHH--HSSEEEECSSCTTCBCGGGC
T ss_pred -----cccHHHhhc--cCCEEEECCCCCccccHhhc
Confidence 123778888 89999999999999998765
No 43
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Probab=93.66 E-value=0.36 Score=51.07 Aligned_cols=165 Identities=18% Similarity=0.196 Sum_probs=105.5
Q ss_pred CchhhhHhHHHHHHHHHHhC-CceeeecccCCCchH--HHHHHHHhcc--CC-cc---ccCcchhHHHHHHHHHHHHHHh
Q 040403 258 DGDEYVSVIDEFMEAIFTRW-PNVIVQFEDFQSKWA--FKLLQRYRYK--YR-MF---NDDVQGTAGVAVAGLLGAVRAQ 328 (623)
Q Consensus 258 ~g~~Y~~~vdefv~av~~~~-P~~lIqfEDf~~~nA--f~lL~ryr~~--~~-~F---NDDiQGTaaV~lAgll~A~r~~ 328 (623)
+..+-++++..|.+++..+. + .|-=+|++..-. --+.+.|+.- -+ .+ .|=-.-||-=+.-++-.+++..
T Consensus 91 s~~~~e~~~r~~~~~~~~l~g~--~ipa~D~gt~~~~m~~~~~~~~~~tGk~~~~GGs~~~~~aTg~Gv~~~~~~~~~~~ 168 (355)
T 1c1d_A 91 DPSTWARILRIHAENIDKLSGN--YWTGPDVNTNSADMDTLNDTTEFVFGRSLERGGAGSSAFTTAVGVFEAMKATVAHR 168 (355)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTS--EEEEECTTCCHHHHHHHHHHCSCBCCCCGGGTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ChhhHHHHHHHHHHHHHHhcCC--cccCCCCCCCHHHHHHHHHhcCeeeccchhhCCCCCchhHHHHHHHHHHHHHHHhc
Confidence 33455678888888888875 4 456688876321 2244445420 11 11 1111236666667778888888
Q ss_pred CC-CCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhh
Q 040403 329 GR-SMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNE 407 (623)
Q Consensus 329 g~-~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~ 407 (623)
|. . |++.+|+|.|.|..|..+|+.+... |. ++++.|++ .....+++.- .
T Consensus 169 G~~~---L~GktV~I~G~GnVG~~~A~~l~~~-----Ga----------kVvvsD~~-----------~~~~~~a~~~-g 218 (355)
T 1c1d_A 169 GLGS---LDGLTVLVQGLGAVGGSLASLAAEA-----GA----------QLLVADTD-----------TERVAHAVAL-G 218 (355)
T ss_dssp TCCC---STTCEEEEECCSHHHHHHHHHHHHT-----TC----------EEEEECSC-----------HHHHHHHHHT-T
T ss_pred CCCC---CCCCEEEEECcCHHHHHHHHHHHHC-----CC----------EEEEEeCC-----------ccHHHHHHhc-C
Confidence 97 7 9999999999999999999887663 73 57788874 1113344211 0
Q ss_pred hcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCC-CCC
Q 040403 408 ISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSN-PTN 467 (623)
Q Consensus 408 ~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSN-Pt~ 467 (623)
....++.++.+ ++.|+|+=++ ..+.++++-++.|| -.+|.--+| |+.
T Consensus 219 ------a~~v~~~ell~-~~~DIliP~A-~~~~I~~~~~~~lk-----~~iVie~AN~p~t 266 (355)
T 1c1d_A 219 ------HTAVALEDVLS-TPCDVFAPCA-MGGVITTEVARTLD-----CSVVAGAANNVIA 266 (355)
T ss_dssp ------CEECCGGGGGG-CCCSEEEECS-CSCCBCHHHHHHCC-----CSEECCSCTTCBC
T ss_pred ------CEEeChHHhhc-CccceecHhH-HHhhcCHHHHhhCC-----CCEEEECCCCCCC
Confidence 11123444333 5789999554 67899999999993 368887777 653
No 44
>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}
Probab=93.64 E-value=1.4 Score=48.26 Aligned_cols=186 Identities=15% Similarity=0.101 Sum_probs=119.0
Q ss_pred CchhhhHhHHHHHHHHHHhC-CceeeecccCCCchH--HHHHHHHhcc--C--Ccc----------ccCcchhHHHHHHH
Q 040403 258 DGDEYVSVIDEFMEAIFTRW-PNVIVQFEDFQSKWA--FKLLQRYRYK--Y--RMF----------NDDVQGTAGVAVAG 320 (623)
Q Consensus 258 ~g~~Y~~~vdefv~av~~~~-P~~lIqfEDf~~~nA--f~lL~ryr~~--~--~~F----------NDDiQGTaaV~lAg 320 (623)
+..|...|...||..+.+.. |..-|-=+|++..-. --+.+.|+.. . .|+ .++-.-||-=+.-+
T Consensus 159 S~~El~r~~r~f~~~L~~~iGp~~DvpApDvGt~~~em~~~~~~y~~~~~~~~gvvTGKp~~~GGs~~r~~aTg~Gv~~~ 238 (470)
T 2bma_A 159 SDNEILKFCQAFMNELYRHIGPCTDVPAGDIGVGGREIGYLYGQYKKIVNSFNGTLTGKNVKWGGSNLRVEATGYGLVYF 238 (470)
T ss_dssp CHHHHHHHHHHHHHHHGGGCBTTTEEEECCSSCCHHHHHHHHHHHHHHHCCCSCSSSSCCGGGTCCTTTTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhhccCCCCCccCCCCCCChHHHHHHHHHHHHhcCCcccEEeCCCccCCCCCCccccchHHHHHH
Confidence 45667778888888887654 887788899987422 2255666531 1 111 11223466666777
Q ss_pred HHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEE-EEccCCcccCCCCCCChhhH
Q 040403 321 LLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFW-VVDAKGLITEDRENIDPDAK 399 (623)
Q Consensus 321 ll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~-lvD~~GLi~~~r~~l~~~~~ 399 (623)
+-.+++..|.+ |++.||+|-|.|..|...|+.|.+. |. +++ +.|++|-|++.. .|+....
T Consensus 239 ~~~~l~~~G~~---l~g~~vaVqG~GnVG~~~a~~L~~~-----Ga----------kvVavsD~~G~i~dp~-Gid~edl 299 (470)
T 2bma_A 239 VLEVLKSLNIP---VEKQTAVVSGSGNVALYCVQKLLHL-----NV----------KVLTLSDSNGYVYEPN-GFTHENL 299 (470)
T ss_dssp HHHHHHTTTCC---GGGCEEEEECSSHHHHHHHHHHHHT-----TC----------EECEEEETTEEEECSS-CCCHHHH
T ss_pred HHHHHHhccCC---cCCCEEEEECCcHHHHHHHHHHHHC-----CC----------EEEEEEeCCceEECCC-CCCHHHH
Confidence 88888888987 9999999999999999999998774 73 444 899999988743 2543321
Q ss_pred HhH-HHhh----hhccccc--C--CCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCC-CC
Q 040403 400 PFA-RKVN----EISRQGL--W--EGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSN-PT 466 (623)
Q Consensus 400 ~fA-~~~~----~~~~~~~--~--~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSN-Pt 466 (623)
... +... .+..... + ...+-.+.. .++.||||=+. .++..|++-++.+ -+ +.-.+|.--+| |+
T Consensus 300 ~~l~~~k~~~~g~v~~~~~~~~~a~~v~~~~~~-~~~~DI~iPcA-~~~~I~~~na~~l-~~-~~ak~V~EgAN~p~ 372 (470)
T 2bma_A 300 EFLIDLKEEKKGRIKEYLNHSSTAKYFPNEKPW-GVPCTLAFPCA-TQNDVDLDQAKLL-QK-NGCILVGEGANMPS 372 (470)
T ss_dssp HHHHHHHTTTTCCGGGGGGTCSSCEECSSCCTT-SSCCSEEEECS-STTCBCSHHHHHH-HH-TTCCEEECCSSSCB
T ss_pred HHHHHHHHhcCCcHHHHHhhcCCcEEecCcCee-ecCccEEEecc-ccCcCCHHHHHHH-Hh-cCcEEEEeCCCCCC
Confidence 111 1000 0111000 0 000001222 56899999888 5799999999998 22 35679998888 55
No 45
>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}
Probab=93.60 E-value=0.41 Score=46.58 Aligned_cols=123 Identities=15% Similarity=0.176 Sum_probs=72.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGA 417 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~ 417 (623)
.||.|+|+|..|..+|..|... |... .++++++|++ ++..+.+++. .. .....
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~-----g~~~------~~~V~~~~r~----------~~~~~~~~~~-~g-----~~~~~ 55 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINK-----NIVS------SNQIICSDLN----------TANLKNASEK-YG-----LTTTT 55 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT-----TSSC------GGGEEEECSC----------HHHHHHHHHH-HC-----CEECS
T ss_pred CeEEEECccHHHHHHHHHHHhC-----CCCC------CCeEEEEeCC----------HHHHHHHHHH-hC-----CEEeC
Confidence 5899999999999999988774 7421 2578888873 1122233321 01 22356
Q ss_pred CHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccC-CcEEEecCCCCCccc
Q 040403 418 SLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVG-DNIIFASGSPFKDVD 496 (623)
Q Consensus 418 ~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~-Grai~AtGsPF~pv~ 496 (623)
++.|+++ ++|++| ++. +....+++++.++....+..+|...++-.+ .+..-++.. +..++ ..-|+.|+.
T Consensus 56 ~~~e~~~--~aDvVi-lav-~~~~~~~v~~~l~~~l~~~~~vvs~~~gi~-----~~~l~~~~~~~~~~v-~~~p~~p~~ 125 (247)
T 3gt0_A 56 DNNEVAK--NADILI-LSI-KPDLYASIINEIKEIIKNDAIIVTIAAGKS-----IESTENAFNKKVKVV-RVMPNTPAL 125 (247)
T ss_dssp CHHHHHH--HCSEEE-ECS-CTTTHHHHC---CCSSCTTCEEEECSCCSC-----HHHHHHHHCSCCEEE-EEECCGGGG
T ss_pred ChHHHHH--hCCEEE-EEe-CHHHHHHHHHHHHhhcCCCCEEEEecCCCC-----HHHHHHHhCCCCcEE-EEeCChHHH
Confidence 7899998 688887 332 344567888888222345668887777664 233333322 32333 334777776
Q ss_pred c
Q 040403 497 L 497 (623)
Q Consensus 497 ~ 497 (623)
.
T Consensus 126 ~ 126 (247)
T 3gt0_A 126 V 126 (247)
T ss_dssp G
T ss_pred H
Confidence 6
No 46
>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1
Probab=93.36 E-value=0.43 Score=51.61 Aligned_cols=182 Identities=12% Similarity=0.087 Sum_probs=116.3
Q ss_pred CchhhhHhHHHHHHHHHHhC-CceeeecccCCCchHHH---HHHHHhc---c--CCccccC----------cchhHHHHH
Q 040403 258 DGDEYVSVIDEFMEAIFTRW-PNVIVQFEDFQSKWAFK---LLQRYRY---K--YRMFNDD----------VQGTAGVAV 318 (623)
Q Consensus 258 ~g~~Y~~~vdefv~av~~~~-P~~lIqfEDf~~~nAf~---lL~ryr~---~--~~~FNDD----------iQGTaaV~l 318 (623)
+.+|...|...|+.++...- |+..|-=+|++.. +.. +.+.|+. . ..++--+ -.-||-=+.
T Consensus 116 s~~e~~r~~r~f~~~l~~~iG~~~dvpA~D~Gt~-~~~m~~~~~~y~~~~~~~~~~~~tGk~~~~GGs~~r~~aTg~Gv~ 194 (421)
T 1v9l_A 116 SQRELEELSRGYARAIAPLIGDVVDIPAPDVGTN-AQIMAWMVDEYSKIKGYNVPGVFTSKPPELWGNPVREYATGFGVA 194 (421)
T ss_dssp CHHHHHHHHHHHHHHHGGGCBTTTEEEECCTTCC-HHHHHHHHHHHHHHHTSCCGGGSCSCCSSSSCCGGGGGHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCCCC-HHHHHHHHHHHHHHhCCCCCCeEeccchhhCCCCCcccchHHHHH
Confidence 45667788999999998877 8887888999873 222 3455633 1 1222222 123555566
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEE-EEccCCcccCCCCCCChh
Q 040403 319 AGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFW-VVDAKGLITEDRENIDPD 397 (623)
Q Consensus 319 Agll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~-lvD~~GLi~~~r~~l~~~ 397 (623)
-++-.+++..|.+ |++.||+|.|.|..|...|++|.+. |. +++ +.|++|-|++... |+..
T Consensus 195 ~~~~~~~~~~g~~---l~gk~vaVqG~GnVG~~aa~~L~e~-----Ga----------kVVavsD~~G~i~dp~G-lD~~ 255 (421)
T 1v9l_A 195 VATREMAKKLWGG---IEGKTVAIQGMGNVGRWTAYWLEKM-----GA----------KVIAVSDINGVAYRKEG-LNVE 255 (421)
T ss_dssp HHHHHHHHHHHSC---CTTCEEEEECCSHHHHHHHHHHHTT-----TC----------EEEEEECSSCEEECTTC-CCTH
T ss_pred HHHHHHHHhcCCC---cCCCEEEEECcCHHHHHHHHHHHHC-----CC----------EEEEEECCCcEEECCCC-CCHH
Confidence 6777888889998 9999999999999999999887663 63 444 8999999887532 3221
Q ss_pred -hHHhHHHhhh--hcccc-c---CCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCC-CC
Q 040403 398 -AKPFARKVNE--ISRQG-L---WEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSN-PT 466 (623)
Q Consensus 398 -~~~fA~~~~~--~~~~~-~---~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSN-Pt 466 (623)
.+.+...... |.++. . ....+-.| +-.++.|+|+=+. .++.+|++-++.+ .-.||.--+| |+
T Consensus 256 ~l~~~k~~~g~~~v~~y~~~~~~~~~~~~~~-~~~~~~Dil~P~A-~~~~I~~~~a~~l-----~ak~V~EgAN~p~ 325 (421)
T 1v9l_A 256 LIQKNKGLTGPALVELFTTKDNAEFVKNPDA-IFKLDVDIFVPAA-IENVIRGDNAGLV-----KARLVVEGANGPT 325 (421)
T ss_dssp HHHHTTTSCHHHHHHHHHHTSCCCCCSSTTG-GGGCCCSEEEECS-CSSCBCTTTTTTC-----CCSEEECCSSSCB
T ss_pred HHHHHHHhhCCccccccccccCceEeCCchh-hhcCCccEEEecC-cCCccchhhHHHc-----CceEEEecCCCcC
Confidence 1111111001 11110 0 11101122 3457899999777 5788898887777 3578888888 55
No 47
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Probab=93.31 E-value=0.26 Score=49.93 Aligned_cols=103 Identities=16% Similarity=0.147 Sum_probs=62.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhh---hcccccC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNE---ISRQGLW 414 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~---~~~~~~~ 414 (623)
.||.|+|||+.|..+|..|... |+ . .+++++|++- +..+..+....+ .......
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~-----g~-~-------~~V~l~d~~~----------~~~~~~~~~l~~~~~~~~~~~~ 58 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQ-----GV-A-------DDYVFIDANE----------AKVKADQIDFQDAMANLEAHGN 58 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----TC-C-------SEEEEECSSH----------HHHHHHHHHHHHHGGGSSSCCE
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC-C-------CEEEEEcCCH----------HHHHHHHHHHHhhhhhcCCCeE
Confidence 3899999999999999988764 75 2 4699999841 111112211000 0000001
Q ss_pred C-CCCHHHHHhhcCCcEEEeccCC-------CCCC-----------CHHHHHHcccCCCCCCEEEecCCCCC
Q 040403 415 E-GASLVEVVQQVKPDVLLGLSAV-------GGLF-----------SKEVLEAMRGSTSTRPAIFAMSNPTN 467 (623)
Q Consensus 415 ~-~~~L~e~V~~vkptvLIG~S~~-------~g~F-----------t~evv~~M~a~~~erPIIFaLSNPt~ 467 (623)
. ..++ ++++ +.|++|=+... +|.. -+++++.| .++++..+|+-+|||..
T Consensus 59 ~~~~d~-~~~~--~aDvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i-~~~~~~~~ii~~tNp~~ 126 (309)
T 1hyh_A 59 IVINDW-AALA--DADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNL-KESGFHGVLVVISNPVD 126 (309)
T ss_dssp EEESCG-GGGT--TCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHH-HHTTCCSEEEECSSSHH
T ss_pred EEeCCH-HHhC--CCCEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHCCCcEEEEEcCcHH
Confidence 1 2456 6676 78988854433 3321 15888888 67777888888999984
No 48
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*
Probab=93.12 E-value=0.087 Score=55.07 Aligned_cols=102 Identities=15% Similarity=0.211 Sum_probs=67.0
Q ss_pred HHHHHHHHHHH---------hCCCCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCc
Q 040403 317 AVAGLLGAVRA---------QGRSMIDFPKQKIVVAGAGS-AGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGL 386 (623)
Q Consensus 317 ~lAgll~A~r~---------~g~~~~~l~d~riv~~GAGs-Ag~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GL 386 (623)
|-.|.+-.++- .|.+ +...++||+|+|. .|.-+|.++... | .+++++|+...
T Consensus 151 Tp~a~v~ll~~~~~~~~~~~~g~~---l~gk~vvVIG~G~iVG~~~A~~L~~~-----g----------AtVtv~nR~~~ 212 (320)
T 1edz_A 151 TPLAIVKILEFLKIYNNLLPEGNR---LYGKKCIVINRSEIVGRPLAALLAND-----G----------ATVYSVDVNNI 212 (320)
T ss_dssp HHHHHHHHHHHTTCSCTTSCTTCT---TTTCEEEEECCCTTTHHHHHHHHHTT-----S----------CEEEEECSSEE
T ss_pred cHHHHHHHHHhhcccccccccCCC---CCCCEEEEECCCcchHHHHHHHHHHC-----C----------CEEEEEeCchH
Confidence 33444555555 5777 9999999999995 598888887653 5 35888988754
Q ss_pred ccCCCCC-CChhhHHhHHHhhhhcccccCCC--CCHHHHHhhcCCcEEEeccCCCCC-CCHHHHH
Q 040403 387 ITEDREN-IDPDAKPFARKVNEISRQGLWEG--ASLVEVVQQVKPDVLLGLSAVGGL-FSKEVLE 447 (623)
Q Consensus 387 i~~~r~~-l~~~~~~fA~~~~~~~~~~~~~~--~~L~e~V~~vkptvLIG~S~~~g~-Ft~evv~ 447 (623)
-...|.. +... .+.... .... .+|.++++ ++|++|++.+.++. +|.++|+
T Consensus 213 ~l~~ra~~la~~-------~~~~t~--~~~t~~~~L~e~l~--~ADIVIsAtg~p~~vI~~e~vk 266 (320)
T 1edz_A 213 QKFTRGESLKLN-------KHHVED--LGEYSEDLLKKCSL--DSDVVITGVPSENYKFPTEYIK 266 (320)
T ss_dssp EEEESCCCSSCC-------CCEEEE--EEECCHHHHHHHHH--HCSEEEECCCCTTCCBCTTTSC
T ss_pred HHHhHHHHHhhh-------cccccc--cccccHhHHHHHhc--cCCEEEECCCCCcceeCHHHcC
Confidence 4443322 2210 011000 0001 46999999 89999999999887 8987763
No 49
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Probab=93.01 E-value=2.1 Score=43.86 Aligned_cols=145 Identities=16% Similarity=0.144 Sum_probs=95.6
Q ss_pred hCCce-eeecccCCCchHHHHHHHHhccCCccccCcch---hHHHHHHHHHHHHHH----------------hCCCCCCC
Q 040403 276 RWPNV-IVQFEDFQSKWAFKLLQRYRYKYRMFNDDVQG---TAGVAVAGLLGAVRA----------------QGRSMIDF 335 (623)
Q Consensus 276 ~~P~~-lIqfEDf~~~nAf~lL~ryr~~~~~FNDDiQG---TaaV~lAgll~A~r~----------------~g~~~~~l 335 (623)
..|+. .|+.--.+..| ..+-.--+..+.+.|----. +|=-+++.+|+..|- .+.. |
T Consensus 65 ~~~~Lk~I~~~~~G~d~-id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~---l 140 (313)
T 2ekl_A 65 KGKKLKIIARAGIGLDN-IDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIFKKIEGLE---L 140 (313)
T ss_dssp HCTTCCEEEECSSCCTT-BCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCC---C
T ss_pred hCCCCeEEEEcCCCCCc-cCHHHHHhCCeEEEeCCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCCC---C
Confidence 35775 67666655555 22222223458888754323 344589999988875 2445 9
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWE 415 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~ 415 (623)
.+.+|.|+|.|..|..+|+.+... |+ +++.+|+.. . +. .+.. .. -.
T Consensus 141 ~g~~vgIIG~G~IG~~~A~~l~~~-----G~----------~V~~~d~~~---------~--~~-~~~~-~g------~~ 186 (313)
T 2ekl_A 141 AGKTIGIVGFGRIGTKVGIIANAM-----GM----------KVLAYDILD---------I--RE-KAEK-IN------AK 186 (313)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHT-----TC----------EEEEECSSC---------C--HH-HHHH-TT------CE
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHC-----CC----------EEEEECCCc---------c--hh-HHHh-cC------ce
Confidence 999999999999999999988764 73 578888741 1 11 1211 01 11
Q ss_pred CCCHHHHHhhcCCcEEEeccC----CCCCCCHHHHHHcccCCCCCCEEEecCC
Q 040403 416 GASLVEVVQQVKPDVLLGLSA----VGGLFSKEVLEAMRGSTSTRPAIFAMSN 464 (623)
Q Consensus 416 ~~~L~e~V~~vkptvLIG~S~----~~g~Ft~evv~~M~a~~~erPIIFaLSN 464 (623)
..+|.|+++ +.|+++=+-- ..+.++++.++.| .+..++.-.|.
T Consensus 187 ~~~l~ell~--~aDvVvl~~P~~~~t~~li~~~~l~~m----k~ga~lIn~ar 233 (313)
T 2ekl_A 187 AVSLEELLK--NSDVISLHVTVSKDAKPIIDYPQFELM----KDNVIIVNTSR 233 (313)
T ss_dssp ECCHHHHHH--HCSEEEECCCCCTTSCCSBCHHHHHHS----CTTEEEEESSC
T ss_pred ecCHHHHHh--hCCEEEEeccCChHHHHhhCHHHHhcC----CCCCEEEECCC
Confidence 247999998 7898885421 3477889999999 56678887777
No 50
>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A
Probab=92.88 E-value=4.1 Score=44.42 Aligned_cols=187 Identities=13% Similarity=0.154 Sum_probs=117.1
Q ss_pred CchhhhHhHHHHHHHHHHhC-CceeeecccCCCchHH--HHHHHHhc---c--CCcccc----------CcchhHHHHHH
Q 040403 258 DGDEYVSVIDEFMEAIFTRW-PNVIVQFEDFQSKWAF--KLLQRYRY---K--YRMFND----------DVQGTAGVAVA 319 (623)
Q Consensus 258 ~g~~Y~~~vdefv~av~~~~-P~~lIqfEDf~~~nAf--~lL~ryr~---~--~~~FND----------DiQGTaaV~lA 319 (623)
+..|...|-..||..+.+.. |..-|-=+|++..-.. -+.+.|+. . ..++-. .-.-||-=+.-
T Consensus 136 s~~e~~r~~r~f~~~L~~~ig~~~dvpA~DvGt~~~~m~~~~~~y~~~~~~~~~g~~tGk~~~~GGs~~r~~aTg~Gv~~ 215 (449)
T 1bgv_A 136 SDREVMRFCQAFMTELYRHIGPDIDVPAGDLGVGAREIGYMYGQYRKIVGGFYNGVLTGKARSFGGSLVRPEATGYGSVY 215 (449)
T ss_dssp CHHHHHHHHHHHHHHHGGGCBTTTEEEECBTTBCHHHHHHHHHHHHHHHTSCCGGGSSSCCGGGTCCTTTTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhheeCCCCcCCCCCCCCCHHHHHHHHHHHHHhcCCCcCceEecCCcccCCCCCcccchhHHHHH
Confidence 34567777788888886555 8888888999876221 23445543 1 122211 22346666666
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCC-Chhh
Q 040403 320 GLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENI-DPDA 398 (623)
Q Consensus 320 gll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l-~~~~ 398 (623)
++-.+++..|.+ |++.||+|-|.|..|...|++|.+. |. +=+-+.|++|-|++.. .| ++..
T Consensus 216 ~~~~~~~~~G~~---l~g~~v~VqG~GnVG~~~a~~L~~~-----Ga---------kvVavsD~~G~i~dp~-Gi~d~ed 277 (449)
T 1bgv_A 216 YVEAVMKHENDT---LVGKTVALAGFGNVAWGAAKKLAEL-----GA---------KAVTLSGPDGYIYDPE-GITTEEK 277 (449)
T ss_dssp HHHHHHHHTTCC---STTCEEEECCSSHHHHHHHHHHHHH-----TC---------EEEEEEETTEEEECTT-CSCSHHH
T ss_pred HHHHHHHHccCC---cCCCEEEEECCCHHHHHHHHHHHHC-----CC---------EEEEEEeCCceEECCC-cCCCHHH
Confidence 777888888988 9999999999999999999888775 73 3355799999988743 25 3221
Q ss_pred ----HHhHHHh-hhhccccc---CCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCC-CC
Q 040403 399 ----KPFARKV-NEISRQGL---WEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSN-PT 466 (623)
Q Consensus 399 ----~~fA~~~-~~~~~~~~---~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSN-Pt 466 (623)
..+.... ..|..... ....+-.+. -.++.|+|+=+. .++..|++-++.+++. ...+|.--+| |+
T Consensus 278 i~~l~~~k~~~~g~v~~y~~~~~a~~i~~~e~-~~~~~Dil~P~A-~~~~I~~~na~~l~a~--g~kiV~EgAN~p~ 350 (449)
T 1bgv_A 278 INYMLEMRASGRNKVQDYADKFGVQFFPGEKP-WGQKVDIIMPCA-TQNDVDLEQAKKIVAN--NVKYYIEVANMPT 350 (449)
T ss_dssp HHHHHHHHHHCCCCTHHHHHHHTCEEEETCCG-GGSCCSEEECCS-CTTCBCHHHHHHHHHT--TCCEEECCSSSCB
T ss_pred HHHHHHHHhccCCChhhcccccCCEEeCchhh-hcCCcceeeccc-cccccchhhHHHHHhc--CCeEEEeCCCCcC
Confidence 1111100 01110000 000000011 256899999777 6799999999999432 3468888888 55
No 51
>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*
Probab=92.73 E-value=1.2 Score=46.25 Aligned_cols=196 Identities=13% Similarity=0.123 Sum_probs=104.7
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC-cccCCCCCCChhhHHhHHHhhh--hccc-
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG-LITEDRENIDPDAKPFARKVNE--ISRQ- 411 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G-Li~~~r~~l~~~~~~fA~~~~~--~~~~- 411 (623)
.-.||.|+|||..|.|||..++.+ |+ ++.++|.+= .+... +...++.+.+-... ...-
T Consensus 5 ~~~~VaViGaG~MG~giA~~~a~~-----G~----------~V~l~D~~~~~l~~~---~~~i~~~l~~~~~~g~~~~~~ 66 (319)
T 3ado_A 5 AAGDVLIVGSGLVGRSWAMLFASG-----GF----------RVKLYDIEPRQITGA---LENIRKEMKSLQQSGSLKGSL 66 (319)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHT-----TC----------CEEEECSCHHHHHHH---HHHHHHHHHHHHHTTCCCSSS
T ss_pred CCCeEEEECCcHHHHHHHHHHHhC-----CC----------eEEEEECCHHHHHHH---HHHHHHHHHHHHHcCCCCCcc
Confidence 457999999999999999998875 85 467788630 00000 00011111110000 0000
Q ss_pred -------ccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccC--C
Q 040403 412 -------GLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVG--D 482 (623)
Q Consensus 412 -------~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~--G 482 (623)
......+|.|+++ +.|.+|=+----=...+++.+.+ .+++..-.||+ ||=. =..+.+..+.+. .
T Consensus 67 ~~~~~l~~i~~~~~l~~a~~--~ad~ViEav~E~l~iK~~lf~~l-~~~~~~~aIla-SNTS---sl~is~ia~~~~~p~ 139 (319)
T 3ado_A 67 SAEEQLSLISSCTNLAEAVE--GVVHIQECVPENLDLKRKIFAQL-DSIVDDRVVLS-SSSS---CLLPSKLFTGLAHVK 139 (319)
T ss_dssp CHHHHHHTEEEECCHHHHTT--TEEEEEECCCSCHHHHHHHHHHH-HTTCCSSSEEE-ECCS---SCCHHHHHTTCTTGG
T ss_pred CHHHHHhhcccccchHhHhc--cCcEEeeccccHHHHHHHHHHHH-HHHhhhcceee-hhhh---hccchhhhhhccCCC
Confidence 0112467888888 77777754322122567888888 88888888886 4422 234444444332 4
Q ss_pred cEEEecCCCCCccccCCCeeccCCCCccccchhHHHHHHHHcCCcccCHHHHHHHHHHHHcccCcccccCCccccCCCCc
Q 040403 483 NIIFASGSPFKDVDLGNGHIGHCNQGNNMYLFPGVGLGTLLSGSRIISDGMLQAAAECLAEYMTEEEVVKGKIYPSISSI 562 (623)
Q Consensus 483 rai~AtGsPF~pv~~~~G~~~~p~Q~NN~yiFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v~~~~l~~g~l~P~~~~i 562 (623)
|+|.. -||.|+.+-. =+-|-|| .. |+.=.++.+.+++..+-..- +.-.-+..
T Consensus 140 r~ig~--HffNP~~~m~----------LVEiv~g----------~~-Ts~~~~~~~~~~~~~~gk~p-----v~v~kd~p 191 (319)
T 3ado_A 140 QCIVA--HPVNPPYYIP----------LVELVPH----------PE-TSPATVDRTHALMRKIGQSP-----VRVLKEID 191 (319)
T ss_dssp GEEEE--EECSSTTTCC----------EEEEEEC----------TT-CCHHHHHHHHHHHHHTTCEE-----EECSSCCT
T ss_pred cEEEe--cCCCCccccc----------hHHhcCC----------CC-CcHHHHHHHHHHHHHhCCcc-----CCcCCCCC
Confidence 56654 4888886511 1112222 22 44445566777776553221 11111112
Q ss_pred ccchHHHHHHHHHHH---HHcCccc
Q 040403 563 RNITKEVAAAVVKEA---LEEDLAE 584 (623)
Q Consensus 563 r~vs~~VA~aVa~~A---~~~GlA~ 584 (623)
--|.-++..+....| +++|+|+
T Consensus 192 GFi~NRl~~~~~~EA~~lv~eGvas 216 (319)
T 3ado_A 192 GFVLNRLQYAIISEAWRLVEEGIVS 216 (319)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CEeHHHHHHHHHHHHHHHHHhCCCC
Confidence 346667777777666 5789987
No 52
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*
Probab=92.41 E-value=3.3 Score=42.72 Aligned_cols=145 Identities=17% Similarity=0.150 Sum_probs=92.3
Q ss_pred hCCce-eeecccCCCchHHHHHHHHhccCCccccCcchh---HHHHHHHHHHHHHHh-----------------------
Q 040403 276 RWPNV-IVQFEDFQSKWAFKLLQRYRYKYRMFNDDVQGT---AGVAVAGLLGAVRAQ----------------------- 328 (623)
Q Consensus 276 ~~P~~-lIqfEDf~~~nAf~lL~ryr~~~~~FNDDiQGT---aaV~lAgll~A~r~~----------------------- 328 (623)
..|+. .|+.--.+..| ..+-.--+..+.+.|----.+ |=-+++.+|+..|-.
T Consensus 64 ~~~~Lk~I~~~~~G~d~-id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~ 142 (334)
T 2dbq_A 64 NAPKLRIVANYAVGYDN-IDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKW 142 (334)
T ss_dssp TCTTCCEEEESSSCCTT-BCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTSHHHHTTCCCCTTT
T ss_pred hCCCceEEEECCccccc-ccHHHHHhCCCEEEeCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCccccccccccc
Confidence 45775 66655555554 222222234588888643333 444788899887732
Q ss_pred --CCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhh
Q 040403 329 --GRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVN 406 (623)
Q Consensus 329 --g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~ 406 (623)
|.. |.+.+|.|+|.|..|..+|..+... |. +++.+|+.. .. ..+.. .
T Consensus 143 ~~~~~---l~g~~vgIIG~G~iG~~iA~~l~~~-----G~----------~V~~~d~~~---------~~---~~~~~-~ 191 (334)
T 2dbq_A 143 FLGYD---VYGKTIGIIGLGRIGQAIAKRAKGF-----NM----------RILYYSRTR---------KE---EVERE-L 191 (334)
T ss_dssp TCCCC---CTTCEEEEECCSHHHHHHHHHHHHT-----TC----------EEEEECSSC---------CH---HHHHH-H
T ss_pred ccccC---CCCCEEEEEccCHHHHHHHHHHHhC-----CC----------EEEEECCCc---------ch---hhHhh-c
Confidence 233 8999999999999999999988763 73 588888741 11 12211 0
Q ss_pred hhcccccCCCCCHHHHHhhcCCcEEEecc-CC---CCCCCHHHHHHcccCCCCCCEEEecCC
Q 040403 407 EISRQGLWEGASLVEVVQQVKPDVLLGLS-AV---GGLFSKEVLEAMRGSTSTRPAIFAMSN 464 (623)
Q Consensus 407 ~~~~~~~~~~~~L~e~V~~vkptvLIG~S-~~---~g~Ft~evv~~M~a~~~erPIIFaLSN 464 (623)
. -...+|.++++ +.|+++=+- .. .+.++++.++.| .+..+|.-.|.
T Consensus 192 g------~~~~~l~~~l~--~aDvVil~vp~~~~t~~~i~~~~~~~m----k~~ailIn~sr 241 (334)
T 2dbq_A 192 N------AEFKPLEDLLR--ESDFVVLAVPLTRETYHLINEERLKLM----KKTAILINIAR 241 (334)
T ss_dssp C------CEECCHHHHHH--HCSEEEECCCCCTTTTTCBCHHHHHHS----CTTCEEEECSC
T ss_pred C------cccCCHHHHHh--hCCEEEECCCCChHHHHhhCHHHHhcC----CCCcEEEECCC
Confidence 1 11247999998 788887432 22 367888899999 56667776664
No 53
>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}
Probab=92.38 E-value=2.1 Score=43.79 Aligned_cols=145 Identities=17% Similarity=0.174 Sum_probs=95.5
Q ss_pred hCCce-eeecccCCCchHHHHHHHHhccCCccccCcch---hHHHHHHHHHHHHHH------------------hCCCCC
Q 040403 276 RWPNV-IVQFEDFQSKWAFKLLQRYRYKYRMFNDDVQG---TAGVAVAGLLGAVRA------------------QGRSMI 333 (623)
Q Consensus 276 ~~P~~-lIqfEDf~~~nAf~lL~ryr~~~~~FNDDiQG---TaaV~lAgll~A~r~------------------~g~~~~ 333 (623)
..|+. .|+.--.+..| ..+-.--+..+.+.|----. +|=-+++.+|+..|- .+..
T Consensus 63 ~~~~Lk~I~~~~~G~d~-id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~-- 139 (307)
T 1wwk_A 63 SAPKLKVIARAGVGLDN-IDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWAKKEAMGIE-- 139 (307)
T ss_dssp TCTTCCEEEESSSCCTT-BCHHHHHHHTCEEECCGGGGHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCTTTCCBCC--
T ss_pred hCCCCeEEEECCccccc-cCHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccCcCCcc--
Confidence 45775 67766666665 33322223458877754323 344478999988773 2334
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhccccc
Q 040403 334 DFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGL 413 (623)
Q Consensus 334 ~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~ 413 (623)
|.+.+|.|+|.|..|..+|+.+... |+ +++.+|+.. . + ..+.. ..
T Consensus 140 -l~g~~vgIiG~G~IG~~~A~~l~~~-----G~----------~V~~~d~~~---------~--~-~~~~~-~g------ 184 (307)
T 1wwk_A 140 -LEGKTIGIIGFGRIGYQVAKIANAL-----GM----------NILLYDPYP---------N--E-ERAKE-VN------ 184 (307)
T ss_dssp -CTTCEEEEECCSHHHHHHHHHHHHT-----TC----------EEEEECSSC---------C--H-HHHHH-TT------
T ss_pred -cCCceEEEEccCHHHHHHHHHHHHC-----CC----------EEEEECCCC---------C--h-hhHhh-cC------
Confidence 8999999999999999999988764 73 578888741 1 1 12221 11
Q ss_pred CCCCCHHHHHhhcCCcEEEeccC----CCCCCCHHHHHHcccCCCCCCEEEecCC
Q 040403 414 WEGASLVEVVQQVKPDVLLGLSA----VGGLFSKEVLEAMRGSTSTRPAIFAMSN 464 (623)
Q Consensus 414 ~~~~~L~e~V~~vkptvLIG~S~----~~g~Ft~evv~~M~a~~~erPIIFaLSN 464 (623)
-...+|.|+++ +.|+++=.-- ..+.++++.++.| .+.-++.=.|.
T Consensus 185 ~~~~~l~ell~--~aDvV~l~~p~~~~t~~li~~~~l~~m----k~ga~lin~ar 233 (307)
T 1wwk_A 185 GKFVDLETLLK--ESDVVTIHVPLVESTYHLINEERLKLM----KKTAILINTSR 233 (307)
T ss_dssp CEECCHHHHHH--HCSEEEECCCCSTTTTTCBCHHHHHHS----CTTCEEEECSC
T ss_pred ccccCHHHHHh--hCCEEEEecCCChHHhhhcCHHHHhcC----CCCeEEEECCC
Confidence 11237999998 7898885421 3478899999999 56678877777
No 54
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Probab=92.35 E-value=0.13 Score=45.84 Aligned_cols=71 Identities=14% Similarity=0.137 Sum_probs=45.3
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEG 416 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~ 416 (623)
+.+|+|+|+|..|..++..+... |. + ++++|++ .+..+.|++.-.. . ....
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~-----g~---------~-v~v~~r~----------~~~~~~~a~~~~~-~---~~~~ 71 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYP-----QY---------K-VTVAGRN----------IDHVRAFAEKYEY-E---YVLI 71 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTT-----TC---------E-EEEEESC----------HHHHHHHHHHHTC-E---EEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-----CC---------E-EEEEcCC----------HHHHHHHHHHhCC-c---eEee
Confidence 67999999999998887666542 52 3 8888873 1222345532110 0 1134
Q ss_pred CCHHHHHhhcCCcEEEeccCCC
Q 040403 417 ASLVEVVQQVKPDVLLGLSAVG 438 (623)
Q Consensus 417 ~~L~e~V~~vkptvLIG~S~~~ 438 (623)
.++.++++ +.|++|-+.+.+
T Consensus 72 ~~~~~~~~--~~Divi~at~~~ 91 (144)
T 3oj0_A 72 NDIDSLIK--NNDVIITATSSK 91 (144)
T ss_dssp SCHHHHHH--TCSEEEECSCCS
T ss_pred cCHHHHhc--CCCEEEEeCCCC
Confidence 57888888 789998766543
No 55
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}
Probab=92.29 E-value=1.1 Score=47.88 Aligned_cols=119 Identities=15% Similarity=0.134 Sum_probs=86.3
Q ss_pred cCCccccCc---chhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeE
Q 040403 302 KYRMFNDDV---QGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQF 378 (623)
Q Consensus 302 ~~~~FNDDi---QGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i 378 (623)
.|.+.|.-- +.+|=-+++.+|+..|-.|.. |.+.+|.|+|.|..|-.+|+.+... |+ ++
T Consensus 84 gI~v~n~pg~~~~~VAE~~l~~lL~l~r~~g~~---l~gktvGIIGlG~IG~~vA~~l~a~-----G~----------~V 145 (381)
T 3oet_A 84 GIGFSAAPGCNAIAVVEYVFSALLMLAERDGFS---LRDRTIGIVGVGNVGSRLQTRLEAL-----GI----------RT 145 (381)
T ss_dssp TCEEECCTTTTHHHHHHHHHHHHHHHHHHTTCC---GGGCEEEEECCSHHHHHHHHHHHHT-----TC----------EE
T ss_pred CEEEEECCCcCcchhHHHHHHHHHHHHHhcCCc---cCCCEEEEEeECHHHHHHHHHHHHC-----CC----------EE
Confidence 355555432 244556899999999999988 9999999999999999999998764 85 47
Q ss_pred EEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccC--------CCCCCCHHHHHHcc
Q 040403 379 WVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSA--------VGGLFSKEVLEAMR 450 (623)
Q Consensus 379 ~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~--------~~g~Ft~evv~~M~ 450 (623)
+.+|+.. .. ... .....+|.|+++ +.|+++=.-- .-+.|+++.++.|
T Consensus 146 ~~~d~~~-------------~~----~~~-----~~~~~sl~ell~--~aDiV~l~~Plt~~g~~~T~~li~~~~l~~m- 200 (381)
T 3oet_A 146 LLCDPPR-------------AA----RGD-----EGDFRTLDELVQ--EADVLTFHTPLYKDGPYKTLHLADETLIRRL- 200 (381)
T ss_dssp EEECHHH-------------HH----TTC-----CSCBCCHHHHHH--HCSEEEECCCCCCSSTTCCTTSBCHHHHHHS-
T ss_pred EEECCCh-------------HH----hcc-----CcccCCHHHHHh--hCCEEEEcCcCCccccccchhhcCHHHHhcC-
Confidence 7777621 00 001 123467999998 7898874321 4578999999999
Q ss_pred cCCCCCCEEEecCCCC
Q 040403 451 GSTSTRPAIFAMSNPT 466 (623)
Q Consensus 451 a~~~erPIIFaLSNPt 466 (623)
.+..|+.=.|.-.
T Consensus 201 ---k~gailIN~aRG~ 213 (381)
T 3oet_A 201 ---KPGAILINACRGP 213 (381)
T ss_dssp ---CTTEEEEECSCGG
T ss_pred ---CCCcEEEECCCCc
Confidence 6778888777633
No 56
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Probab=92.28 E-value=0.38 Score=50.51 Aligned_cols=98 Identities=20% Similarity=0.224 Sum_probs=62.7
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhc-cccc
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEIS-RQGL 413 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~-~~~~ 413 (623)
+...+|+|+|+|..|..+|+.+... |. +++.+|++ +.+...++...... ....
T Consensus 166 l~g~~V~ViG~G~iG~~~a~~a~~~-----Ga----------~V~~~d~~-----------~~~l~~~~~~~g~~~~~~~ 219 (377)
T 2vhw_A 166 VEPADVVVIGAGTAGYNAARIANGM-----GA----------TVTVLDIN-----------IDKLRQLDAEFCGRIHTRY 219 (377)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHT-----TC----------EEEEEESC-----------HHHHHHHHHHTTTSSEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhC-----CC----------EEEEEeCC-----------HHHHHHHHHhcCCeeEecc
Confidence 7789999999999999999887763 73 58888874 22222332100000 0000
Q ss_pred CCCCCHHHHHhhcCCcEEEeccCCC-----CCCCHHHHHHcccCCCCCCEEEecCC
Q 040403 414 WEGASLVEVVQQVKPDVLLGLSAVG-----GLFSKEVLEAMRGSTSTRPAIFAMSN 464 (623)
Q Consensus 414 ~~~~~L~e~V~~vkptvLIG~S~~~-----g~Ft~evv~~M~a~~~erPIIFaLSN 464 (623)
....++.+.++ +.|++|.+.+.+ ..++++.++.| .+.-+|.=+|-
T Consensus 220 ~~~~~l~~~l~--~aDvVi~~~~~p~~~t~~li~~~~l~~m----k~g~~iV~va~ 269 (377)
T 2vhw_A 220 SSAYELEGAVK--RADLVIGAVLVPGAKAPKLVSNSLVAHM----KPGAVLVDIAI 269 (377)
T ss_dssp CCHHHHHHHHH--HCSEEEECCCCTTSCCCCCBCHHHHTTS----CTTCEEEEGGG
T ss_pred CCHHHHHHHHc--CCCEEEECCCcCCCCCcceecHHHHhcC----CCCcEEEEEec
Confidence 01234778887 789999876544 45789999999 34556666663
No 57
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}
Probab=92.24 E-value=0.21 Score=51.08 Aligned_cols=49 Identities=20% Similarity=0.230 Sum_probs=40.8
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 319 AGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 319 Agll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.|++.+++-.|.+ +++.+++|+|||.+|.+|+..|... |. ++|+++++.
T Consensus 107 ~G~~~~L~~~~~~---~~~k~vlvlGaGGaaraia~~L~~~-----G~---------~~v~v~nRt 155 (282)
T 3fbt_A 107 IGFGKMLSKFRVE---IKNNICVVLGSGGAARAVLQYLKDN-----FA---------KDIYVVTRN 155 (282)
T ss_dssp HHHHHHHHHTTCC---CTTSEEEEECSSTTHHHHHHHHHHT-----TC---------SEEEEEESC
T ss_pred HHHHHHHHHcCCC---ccCCEEEEECCcHHHHHHHHHHHHc-----CC---------CEEEEEeCC
Confidence 6888889888888 9999999999998888887777663 74 579999874
No 58
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=92.15 E-value=0.24 Score=51.31 Aligned_cols=50 Identities=22% Similarity=0.358 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 318 VAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 318 lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
-.|++.+++-.|.+ +++.+++|+|||.+|.+||..|.. + |. ++|+++++.
T Consensus 138 ~~Gf~~~L~~~~~~---l~gk~~lVlGaGG~g~aia~~L~~----~-Ga---------~~V~i~nR~ 187 (315)
T 3tnl_A 138 GTGYMRALKEAGHD---IIGKKMTICGAGGAATAICIQAAL----D-GV---------KEISIFNRK 187 (315)
T ss_dssp HHHHHHHHHHTTCC---CTTSEEEEECCSHHHHHHHHHHHH----T-TC---------SEEEEEECS
T ss_pred HHHHHHHHHHcCCC---ccCCEEEEECCChHHHHHHHHHHH----C-CC---------CEEEEEECC
Confidence 35677888877888 999999999999777777766655 3 84 579999885
No 59
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*
Probab=92.09 E-value=0.24 Score=51.33 Aligned_cols=49 Identities=22% Similarity=0.361 Sum_probs=38.5
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 319 AGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 319 Agll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.|++.+++-.|.+ +++.+++|+|||.+|.+|+..|... |. ++|+++++.
T Consensus 133 ~Gf~~~L~~~~~~---l~gk~~lVlGAGGaaraia~~L~~~-----G~---------~~v~v~nRt 181 (312)
T 3t4e_A 133 TGHIRAIKESGFD---MRGKTMVLLGAGGAATAIGAQAAIE-----GI---------KEIKLFNRK 181 (312)
T ss_dssp HHHHHHHHHTTCC---CTTCEEEEECCSHHHHHHHHHHHHT-----TC---------SEEEEEECS
T ss_pred HHHHHHHHhcCCC---cCCCEEEEECcCHHHHHHHHHHHHc-----CC---------CEEEEEECC
Confidence 4567777777877 9999999999998877777766653 84 579998884
No 60
>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*
Probab=92.07 E-value=0.22 Score=50.60 Aligned_cols=99 Identities=20% Similarity=0.190 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhCCc-eeeecccCCCchHHHHHHHHhcc--------CCccccC--cchhHHHHHHHHHHHHHHhCCCCCC
Q 040403 266 IDEFMEAIFTRWPN-VIVQFEDFQSKWAFKLLQRYRYK--------YRMFNDD--VQGTAGVAVAGLLGAVRAQGRSMID 334 (623)
Q Consensus 266 vdefv~av~~~~P~-~lIqfEDf~~~nAf~lL~ryr~~--------~~~FNDD--iQGTaaV~lAgll~A~r~~g~~~~~ 334 (623)
++++++.++. ++ ..++..-=-...++++|++..+. ..+|++| ..|.-.= -.|++.+++-.|.+
T Consensus 50 l~~~~~~~~~--~~~~G~nVTiP~K~~v~~~ld~l~~~A~~iGAVNTv~~~~~g~l~G~NTD-~~G~~~~L~~~~~~--- 123 (281)
T 3o8q_A 50 FTEAAKHFFA--QGGRGCNVTVPFKEEAYRFADRLTERARLAGAVNTLKKLDDGEILGDNTD-GEGLVQDLLAQQVL--- 123 (281)
T ss_dssp HHHHHHHHHH--TTCCEEEECTTSHHHHHHHCSEECHHHHHHTCCSEEEECTTSCEEEECCH-HHHHHHHHHHTTCC---
T ss_pred HHHHHHHHHh--CCCCEEEECCccHHHHHHHHhhcCHHHHhhCeeeEEEEcCCCcEEEEecH-HHHHHHHHHHhCCC---
Confidence 5666666653 22 24444444445566666654331 1234444 2332111 35677888888888
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+++.+++|+|||.+|.+|+..|... |. ++|+++++.
T Consensus 124 l~~k~vlvlGaGg~g~aia~~L~~~-----G~---------~~v~v~~R~ 159 (281)
T 3o8q_A 124 LKGATILLIGAGGAARGVLKPLLDQ-----QP---------ASITVTNRT 159 (281)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTT-----CC---------SEEEEEESS
T ss_pred ccCCEEEEECchHHHHHHHHHHHhc-----CC---------CeEEEEECC
Confidence 9999999999998877777666553 74 578999884
No 61
>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}
Probab=92.07 E-value=0.12 Score=56.35 Aligned_cols=108 Identities=14% Similarity=0.169 Sum_probs=66.7
Q ss_pred CCceEEEeCcchH--HHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhccccc
Q 040403 336 PKQKIVVAGAGSA--GLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGL 413 (623)
Q Consensus 336 ~d~riv~~GAGsA--g~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~ 413 (623)
+..||.|+|||+. |.||+..|+.. + .+ ...|+|+|.+- ++ +.. ....++.-.. ..+.-
T Consensus 4 ~~~KIaVIGaGs~g~g~~la~~l~~~---~-~~--------~geV~L~Di~~----e~--le~-~~~~~~~l~~-~~~~I 63 (450)
T 3fef_A 4 DQIKIAYIGGGSQGWARSLMSDLSID---E-RM--------SGTVALYDLDF----EA--AQK-NEVIGNHSGN-GRWRY 63 (450)
T ss_dssp CCEEEEEETTTCSSHHHHHHHHHHHC---S-SC--------CEEEEEECSSH----HH--HHH-HHHHHTTSTT-SCEEE
T ss_pred CCCEEEEECCChhHhHHHHHHHHHhc---c-cc--------CCeEEEEeCCH----HH--HHH-HHHHHHHHhc-cCCeE
Confidence 5679999999995 78999888752 1 11 23899999851 00 000 0011100000 01112
Q ss_pred CCCCCHHHHHhhcCCcEEEeccCCC---------------CC---------------------CCHHHHHHcccCCCCCC
Q 040403 414 WEGASLVEVVQQVKPDVLLGLSAVG---------------GL---------------------FSKEVLEAMRGSTSTRP 457 (623)
Q Consensus 414 ~~~~~L~e~V~~vkptvLIG~S~~~---------------g~---------------------Ft~evv~~M~a~~~erP 457 (623)
....++.||++ ++|.+|=.-.++ |. .-.++++.| .++++.-
T Consensus 64 ~~TtD~~eAl~--dADfVI~airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i-~~~~p~a 140 (450)
T 3fef_A 64 EAVSTLKKALS--AADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAI-RDYAPES 140 (450)
T ss_dssp EEESSHHHHHT--TCSEEEECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHH-HHHCTTS
T ss_pred EEECCHHHHhc--CCCEEEeccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHH-HHHCCCe
Confidence 23578999999 899888333211 22 135777888 7889999
Q ss_pred EEEecCCCC
Q 040403 458 AIFAMSNPT 466 (623)
Q Consensus 458 IIFaLSNPt 466 (623)
+++-.|||.
T Consensus 141 ~~i~~tNPv 149 (450)
T 3fef_A 141 WVINYTNPM 149 (450)
T ss_dssp EEEECCSSH
T ss_pred EEEEecCch
Confidence 999999998
No 62
>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*
Probab=91.89 E-value=2.4 Score=46.82 Aligned_cols=187 Identities=18% Similarity=0.213 Sum_probs=118.5
Q ss_pred CCCchhhhHhHHHHHHHHHH-hC--CceeeecccCCCchH--HHHHHHHhccC---------CccccCc---------ch
Q 040403 256 RLDGDEYVSVIDEFMEAIFT-RW--PNVIVQFEDFQSKWA--FKLLQRYRYKY---------RMFNDDV---------QG 312 (623)
Q Consensus 256 Rv~g~~Y~~~vdefv~av~~-~~--P~~lIqfEDf~~~nA--f~lL~ryr~~~---------~~FNDDi---------QG 312 (623)
..+..|-..|...||+.+.+ .+ |...|-=+|++..-. --+.+.|+... |+-..-+ .-
T Consensus 135 ~~s~~El~r~~r~f~~eL~~~~~IGp~~dipApDvGt~~~eM~wm~d~y~~~~g~~~~~~~g~vTGKp~~~GGs~~r~eA 214 (501)
T 3mw9_A 135 NYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISA 214 (501)
T ss_dssp GSCHHHHHHHHHHHHHHHHHTTSCBTTTEECCBCTTCCHHHHHHHHHHHHHTTTTTCTTGGGSCSSCCGGGTCCTTTTTH
T ss_pred cCCHHHHHHHHHHHHHHHhhccCCCCCeeEecCCCCCCHHHHHHHHHHHHHHhCCCcccCCceeeCCcccccCCCCCCCc
Confidence 34667888899999999885 24 888888899987532 23677886421 1111111 23
Q ss_pred hHHHHHHHHHH------HHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCc
Q 040403 313 TAGVAVAGLLG------AVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGL 386 (623)
Q Consensus 313 TaaV~lAgll~------A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GL 386 (623)
||-=+.-++-. +++..|.++ +|++.||+|-|.|..|...|+.|.+. |. +=+-+.|++|-
T Consensus 215 Tg~GV~~~~~~~l~~~~~~~~~G~~~-~l~g~tVaVQG~GNVG~~aa~~L~e~-----Ga---------kVVavsDs~G~ 279 (501)
T 3mw9_A 215 TGRGVFHGIENFINEASYMSILGMTP-GFGDKTFVVQGFGNVGLHSMRYLHRF-----GA---------KCITVGESDGS 279 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHTTCCS-SSTTCEEEEECCSHHHHHHHHHHHHT-----TC---------EEEEEECSSCE
T ss_pred hHHHHHHHHHHHHhhhHHHHHcCCCC-CcCCCEEEEECCCHHHHHHHHHHHHC-----CC---------EEEEEEcCCce
Confidence 44444444443 445667531 28999999999999999999998874 74 44668999999
Q ss_pred ccCCCCCCChhhH-HhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCC-
Q 040403 387 ITEDRENIDPDAK-PFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSN- 464 (623)
Q Consensus 387 i~~~r~~l~~~~~-~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSN- 464 (623)
|++.. +|+..+. .+.......... +....+.+.+-.++.||||=+..+ +..|++-++.++ -.||.--+|
T Consensus 280 iyd~~-Gid~~~l~~~k~~~g~i~~~--~~a~~~~~~il~~~~DIliPcA~~-n~I~~~na~~l~-----akiV~EgAN~ 350 (501)
T 3mw9_A 280 IWNPD-GIDPKELEDFKLQHGTILGF--PKAKIYEGSILEVDCDILIPAASE-KQLTKSNAPRVK-----AKIIAEGANG 350 (501)
T ss_dssp EECTT-CCCHHHHHHHHHHHSSSTTC--TTSEEECSCGGGSCCSEEEECSSS-CCBCTTTGGGCC-----CSEEECCSSS
T ss_pred EECCC-CCCHHHHHHHHHhcCCeecc--cCceeeccccccccceEEeecccc-CccCHhHHHHcC-----ceEEEeCCCC
Confidence 99643 3544321 222111111110 000001112456789999988864 999999998882 579998898
Q ss_pred CC
Q 040403 465 PT 466 (623)
Q Consensus 465 Pt 466 (623)
|+
T Consensus 351 p~ 352 (501)
T 3mw9_A 351 PT 352 (501)
T ss_dssp CB
T ss_pred cC
Confidence 54
No 63
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A
Probab=91.87 E-value=2.1 Score=44.03 Aligned_cols=146 Identities=17% Similarity=0.189 Sum_probs=91.4
Q ss_pred Cce-eeecccCCCchHHHHHHHH-hccCCccccCcc---hhHHHHHHHHHHHHHHh---------CC-----C----CCC
Q 040403 278 PNV-IVQFEDFQSKWAFKLLQRY-RYKYRMFNDDVQ---GTAGVAVAGLLGAVRAQ---------GR-----S----MID 334 (623)
Q Consensus 278 P~~-lIqfEDf~~~nAf~lL~ry-r~~~~~FNDDiQ---GTaaV~lAgll~A~r~~---------g~-----~----~~~ 334 (623)
|+. .|+.-..+..|- .+ +.. +..+.+.|---- .+|=-+++.+|+..|-. |. + ..+
T Consensus 75 ~~Lk~I~~~~~G~d~i-d~-~~~~~~gi~v~n~~~~~~~~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~ 152 (330)
T 2gcg_A 75 ANLKVISTMSVGIDHL-AL-DEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYG 152 (330)
T ss_dssp TTCCEEEESSSCCTTB-CH-HHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCTTSSCBCC
T ss_pred CCceEEEECCcccccc-cH-HHHHhCCceEEeCCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccCcC
Confidence 664 777777666652 22 333 345888886433 33444899999887732 10 0 023
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLW 414 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~ 414 (623)
|.+.+|.|+|.|..|..+|+.+... |+ +++.+|+..- +...+.. .. ..
T Consensus 153 l~g~~vgIIG~G~iG~~iA~~l~~~-----G~----------~V~~~d~~~~-----------~~~~~~~-~g-----~~ 200 (330)
T 2gcg_A 153 LTQSTVGIIGLGRIGQAIARRLKPF-----GV----------QRFLYTGRQP-----------RPEEAAE-FQ-----AE 200 (330)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHGGG-----TC----------CEEEEESSSC-----------CHHHHHT-TT-----CE
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHC-----CC----------EEEEECCCCc-----------chhHHHh-cC-----ce
Confidence 8999999999999999999987653 73 4788886410 0111110 01 11
Q ss_pred CCCCHHHHHhhcCCcEEEeccC----CCCCCCHHHHHHcccCCCCCCEEEecCC
Q 040403 415 EGASLVEVVQQVKPDVLLGLSA----VGGLFSKEVLEAMRGSTSTRPAIFAMSN 464 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLIG~S~----~~g~Ft~evv~~M~a~~~erPIIFaLSN 464 (623)
. .++.|+++ +.|++|=+-. ..+.+++++++.| .+..++.-.|.
T Consensus 201 ~-~~l~e~l~--~aDvVi~~vp~~~~t~~~i~~~~~~~m----k~gailIn~sr 247 (330)
T 2gcg_A 201 F-VSTPELAA--QSDFIVVACSLTPATEGLCNKDFFQKM----KETAVFINISR 247 (330)
T ss_dssp E-CCHHHHHH--HCSEEEECCCCCTTTTTCBSHHHHHHS----CTTCEEEECSC
T ss_pred e-CCHHHHHh--hCCEEEEeCCCChHHHHhhCHHHHhcC----CCCcEEEECCC
Confidence 1 27999888 7898874321 2467888899999 45667766665
No 64
>3tum_A Shikimate dehydrogenase family protein; rossmann-fold NAD(P)(+)-binding site, shikimate dehydrogenas substrate binding domain, oxidoreductase; HET: NAD; 2.15A {Pseudomonas putida}
Probab=91.78 E-value=0.28 Score=49.70 Aligned_cols=47 Identities=26% Similarity=0.437 Sum_probs=38.8
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEcc
Q 040403 320 GLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDA 383 (623)
Q Consensus 320 gll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~ 383 (623)
|++.+++-.|.+ ++..|+|++|||.|+-+|+-.|.+. |. ++|+++++
T Consensus 111 Gf~~~L~~~g~~---~~~~~~lilGaGGaarai~~aL~~~-----g~---------~~i~i~nR 157 (269)
T 3tum_A 111 GFLGAAHKHGFE---PAGKRALVIGCGGVGSAIAYALAEA-----GI---------ASITLCDP 157 (269)
T ss_dssp HHHHHHHHTTCC---CTTCEEEEECCSHHHHHHHHHHHHT-----TC---------SEEEEECS
T ss_pred HHHHHHHHhCCC---cccCeEEEEecHHHHHHHHHHHHHh-----CC---------CeEEEeCC
Confidence 456788888888 8999999999999999988777653 74 67999987
No 65
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}
Probab=91.75 E-value=0.44 Score=49.67 Aligned_cols=98 Identities=21% Similarity=0.318 Sum_probs=60.8
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhh--hcccc
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNE--ISRQG 412 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~--~~~~~ 412 (623)
+...+|+|+|+|..|..+|+.+... |. +++++|++ +.+...++.... ... .
T Consensus 164 l~~~~V~ViGaG~iG~~~a~~l~~~-----Ga----------~V~~~d~~-----------~~~~~~~~~~~g~~~~~-~ 216 (369)
T 2eez_A 164 VAPASVVILGGGTVGTNAAKIALGM-----GA----------QVTILDVN-----------HKRLQYLDDVFGGRVIT-L 216 (369)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHT-----TC----------EEEEEESC-----------HHHHHHHHHHTTTSEEE-E
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhC-----CC----------EEEEEECC-----------HHHHHHHHHhcCceEEE-e
Confidence 6789999999999999998887663 72 58888874 222222221000 000 0
Q ss_pred cCCCCCHHHHHhhcCCcEEEeccCCCC-----CCCHHHHHHcccCCCCCCEEEecCCC
Q 040403 413 LWEGASLVEVVQQVKPDVLLGLSAVGG-----LFSKEVLEAMRGSTSTRPAIFAMSNP 465 (623)
Q Consensus 413 ~~~~~~L~e~V~~vkptvLIG~S~~~g-----~Ft~evv~~M~a~~~erPIIFaLSNP 465 (623)
.....++.++++ +.|++|.+.+.++ .++++.++.| .+.-+|.-+|.+
T Consensus 217 ~~~~~~l~~~~~--~~DvVi~~~g~~~~~~~~li~~~~l~~m----k~gg~iV~v~~~ 268 (369)
T 2eez_A 217 TATEANIKKSVQ--HADLLIGAVLVPGAKAPKLVTRDMLSLM----KEGAVIVDVAVD 268 (369)
T ss_dssp ECCHHHHHHHHH--HCSEEEECCC-------CCSCHHHHTTS----CTTCEEEECC--
T ss_pred cCCHHHHHHHHh--CCCEEEECCCCCccccchhHHHHHHHhh----cCCCEEEEEecC
Confidence 011235778887 7999999876553 4689999999 344566666643
No 66
>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}
Probab=91.69 E-value=0.24 Score=50.14 Aligned_cols=99 Identities=17% Similarity=0.189 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhCCc-eeeecccCCCchHHHHHHHHhcc-------CCccccC--cchhHHHHHHHHHHH-HHHhCCCCCC
Q 040403 266 IDEFMEAIFTRWPN-VIVQFEDFQSKWAFKLLQRYRYK-------YRMFNDD--VQGTAGVAVAGLLGA-VRAQGRSMID 334 (623)
Q Consensus 266 vdefv~av~~~~P~-~lIqfEDf~~~nAf~lL~ryr~~-------~~~FNDD--iQGTaaV~lAgll~A-~r~~g~~~~~ 334 (623)
++++++.++. ++ ..++..-=-...++++|++..+. =++.++| ..|.-.= ..|++.+ ++-.|.+
T Consensus 44 l~~~~~~~~~--~~~~G~nVTiP~K~~v~~~~d~l~~~A~~iGAvNTv~~~~g~l~G~NTD-~~G~~~~lL~~~~~~--- 117 (272)
T 3pwz_A 44 FEAQVLQFRS--EGGKGMNITAPFKLRAFELADRRSERAQLARAANALKFEDGRIVAENFD-GIGLLRDIEENLGEP--- 117 (272)
T ss_dssp HHHHHHHHHH--TTCCEEEECTTCHHHHHHHCSEECHHHHHHTCCSEEEEETTEEEEECCH-HHHHHHHHHTTSCCC---
T ss_pred HHHHHHHHhh--CCCCEEEECchhHHHHHHHHhhCCHHHHHhCccceEEccCCeEEEecCC-HHHHHHHHHHHcCCC---
Confidence 5666766654 23 24444444455666666654331 1123333 3443211 3467777 7777777
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+++.+++|+|||.+|.+++..|.+. |. ++|+++++.
T Consensus 118 l~~k~~lvlGaGg~~~aia~~L~~~-----G~---------~~v~i~~R~ 153 (272)
T 3pwz_A 118 LRNRRVLLLGAGGAVRGALLPFLQA-----GP---------SELVIANRD 153 (272)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHT-----CC---------SEEEEECSC
T ss_pred ccCCEEEEECccHHHHHHHHHHHHc-----CC---------CEEEEEeCC
Confidence 9999999999997777777666653 74 568888874
No 67
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Probab=91.58 E-value=0.58 Score=48.39 Aligned_cols=107 Identities=12% Similarity=0.157 Sum_probs=67.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhc-ccccCCC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEIS-RQGLWEG 416 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~-~~~~~~~ 416 (623)
.||.|+|||+.|.++|.+|... |+ -+++|+|.+- ++ +......+.+...... .......
T Consensus 10 ~kI~VIGaG~vG~~lA~~la~~-----g~---------~~V~L~D~~~----~~--~~~~~~~l~~~~~~~~~~~~i~~t 69 (331)
T 1pzg_A 10 KKVAMIGSGMIGGTMGYLCALR-----EL---------ADVVLYDVVK----GM--PEGKALDLSHVTSVVDTNVSVRAE 69 (331)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----TC---------CEEEEECSSS----SH--HHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC---------CeEEEEECCh----hH--HHHHHHHHHhhhhccCCCCEEEEe
Confidence 5899999999999999998874 64 1399999851 11 1111111111100000 0001123
Q ss_pred CCHHHHHhhcCCcEEEeccCCC---CC----------------CCHHHHHHcccCCCCCCEEEecCCCCC
Q 040403 417 ASLVEVVQQVKPDVLLGLSAVG---GL----------------FSKEVLEAMRGSTSTRPAIFAMSNPTN 467 (623)
Q Consensus 417 ~~L~e~V~~vkptvLIG~S~~~---g~----------------Ft~evv~~M~a~~~erPIIFaLSNPt~ 467 (623)
.++.++++ +.|++|=+.+.| |. .-+++.+.| .++++.-+|+=.|||..
T Consensus 70 ~d~~ea~~--~aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i-~~~~p~a~vi~~tNP~~ 136 (331)
T 1pzg_A 70 YSYEAALT--GADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNI-KKYCPKTFIIVVTNPLD 136 (331)
T ss_dssp CSHHHHHT--TCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHH-HHHCTTCEEEECCSSHH
T ss_pred CCHHHHhC--CCCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHH-HHHCCCcEEEEEcCchH
Confidence 67888888 899998655433 33 136788888 78888888888899984
No 68
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*
Probab=91.53 E-value=1.1 Score=44.81 Aligned_cols=84 Identities=15% Similarity=0.161 Sum_probs=57.7
Q ss_pred eeecccCCCchHHHHHHHHhcc------CCccccCcchhHHHHHHHHHHHHHHh-CCCCCCCCCceEEEeC-cchHHHHH
Q 040403 281 IVQFEDFQSKWAFKLLQRYRYK------YRMFNDDVQGTAGVAVAGLLGAVRAQ-GRSMIDFPKQKIVVAG-AGSAGLGV 352 (623)
Q Consensus 281 lIqfEDf~~~nAf~lL~ryr~~------~~~FNDDiQGTaaV~lAgll~A~r~~-g~~~~~l~d~riv~~G-AGsAg~GI 352 (623)
.+.++-+.-..+.+++++-+.. ..+| .|..|.- ..-.|++.+++-. +.+ +++.+++|.| +|.+|.+|
T Consensus 61 ~~~~~G~~~~~~~~~~~~~~~~~~gavnt~~~-~~~~G~n-Td~~g~~~~l~~~~~~~---l~gk~vlVtGaaGGiG~ai 135 (287)
T 1lu9_A 61 AIFVGGGDMAAGERVFEAVKKRFFGPFRVSCM-LDSNGSN-TTAAAGVALVVKAAGGS---VKGKKAVVLAGTGPVGMRS 135 (287)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHCBTTBCCEEE-ECSTTHH-HHHHHHHHHHHHHTTSC---CTTCEEEEETCSSHHHHHH
T ss_pred eEEEccchHHHHHHHHHHHHHhcCCCeEEEEe-cCCCcCC-chHHHHHHHHHHhhccC---CCCCEEEEECCCcHHHHHH
Confidence 4445555556888888887743 2234 4455532 3456677777766 777 8899999999 89888888
Q ss_pred HHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 353 LNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 353 A~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+..+.+. |. +++++|++
T Consensus 136 a~~L~~~-----G~----------~V~i~~R~ 152 (287)
T 1lu9_A 136 AALLAGE-----GA----------EVVLCGRK 152 (287)
T ss_dssp HHHHHHT-----TC----------EEEEEESS
T ss_pred HHHHHHC-----cC----------EEEEEECC
Confidence 8877663 72 38888874
No 69
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}
Probab=91.45 E-value=0.24 Score=50.40 Aligned_cols=88 Identities=18% Similarity=0.260 Sum_probs=55.4
Q ss_pred HHHHHHHHHhC-CCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChh
Q 040403 319 AGLLGAVRAQG-RSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPD 397 (623)
Q Consensus 319 Agll~A~r~~g-~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~ 397 (623)
.|++.+++..+ .+ ++..+++|+|||.+|.++|..|... |. ++|+++|+. .+.
T Consensus 125 ~G~~~~l~~~~~~~---l~~~~vlVlGaGg~g~aia~~L~~~-----G~---------~~V~v~nR~----------~~k 177 (297)
T 2egg_A 125 LGYVQALEEEMNIT---LDGKRILVIGAGGGARGIYFSLLST-----AA---------ERIDMANRT----------VEK 177 (297)
T ss_dssp HHHHHHHHHHTTCC---CTTCEEEEECCSHHHHHHHHHHHTT-----TC---------SEEEEECSS----------HHH
T ss_pred HHHHHHHHHhCCCC---CCCCEEEEECcHHHHHHHHHHHHHC-----CC---------CEEEEEeCC----------HHH
Confidence 67778888777 66 8899999999998888887777653 74 568988884 111
Q ss_pred hHHhHHHhhh-hcccccCCCCCHHHHHhhcCCcEEEeccCC
Q 040403 398 AKPFARKVNE-ISRQGLWEGASLVEVVQQVKPDVLLGLSAV 437 (623)
Q Consensus 398 ~~~fA~~~~~-~~~~~~~~~~~L~e~V~~vkptvLIG~S~~ 437 (623)
.+.+++.-.. ... .....++.++++ +.|++|-+.+.
T Consensus 178 a~~la~~~~~~~~~--~~~~~~~~~~~~--~aDivIn~t~~ 214 (297)
T 2egg_A 178 AERLVREGDERRSA--YFSLAEAETRLA--EYDIIINTTSV 214 (297)
T ss_dssp HHHHHHHSCSSSCC--EECHHHHHHTGG--GCSEEEECSCT
T ss_pred HHHHHHHhhhccCc--eeeHHHHHhhhc--cCCEEEECCCC
Confidence 2344421100 000 000123556565 79999987754
No 70
>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*
Probab=91.39 E-value=0.23 Score=49.61 Aligned_cols=49 Identities=22% Similarity=0.322 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 318 VAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 318 lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
-.|++.+++-.|.. ++..+++|+|||.+|.++|..|... | .+++++|+.
T Consensus 103 ~~G~~~~L~~~~~~---~~~~~vlvlGaGg~g~a~a~~L~~~-----G----------~~v~v~~R~ 151 (272)
T 1p77_A 103 GIGLVTDLQRLNWL---RPNQHVLILGAGGATKGVLLPLLQA-----Q----------QNIVLANRT 151 (272)
T ss_dssp HHHHHHHHHHTTCC---CTTCEEEEECCSHHHHTTHHHHHHT-----T----------CEEEEEESS
T ss_pred HHHHHHHHHHhCCC---cCCCEEEEECCcHHHHHHHHHHHHC-----C----------CEEEEEECC
Confidence 46777788877777 8999999999998888888777653 6 468888884
No 71
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*
Probab=91.34 E-value=0.16 Score=51.70 Aligned_cols=49 Identities=20% Similarity=0.300 Sum_probs=38.8
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 319 AGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 319 Agll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.|++.+++-.+.+ +++.+++|+|||.+|.+|+..|... |. ++|+++++.
T Consensus 102 ~G~~~~L~~~~~~---l~~k~vlvlGaGg~g~aia~~L~~~-----G~---------~~v~v~~R~ 150 (277)
T 3don_A 102 IGYVNGLKQIYEG---IEDAYILILGAGGASKGIANELYKI-----VR---------PTLTVANRT 150 (277)
T ss_dssp HHHHHHHHHHSTT---GGGCCEEEECCSHHHHHHHHHHHTT-----CC---------SCCEEECSC
T ss_pred HHHHHHHHHhCCC---cCCCEEEEECCcHHHHHHHHHHHHC-----CC---------CEEEEEeCC
Confidence 4566778888888 8999999999998888887777653 74 468888885
No 72
>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}
Probab=91.05 E-value=0.18 Score=50.43 Aligned_cols=123 Identities=23% Similarity=0.359 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhCCc---------eeeecccCCCchHHHHH--HHHhccCCccccCcchhHHHHHHHHHHHHHHhCCCCCC
Q 040403 266 IDEFMEAIFTRWPN---------VIVQFEDFQSKWAFKLL--QRYRYKYRMFNDDVQGTAGVAVAGLLGAVRAQGRSMID 334 (623)
Q Consensus 266 vdefv~av~~~~P~---------~lIqfEDf~~~nAf~lL--~ryr~~~~~FNDDiQGTaaV~lAgll~A~r~~g~~~~~ 334 (623)
+++|++.++.-|-. ..+.+=|- ++.|..+= +....+ .=+|-|-. |++.+++-. .
T Consensus 42 l~~~~~~~~~~~~G~nVT~P~K~~v~~~~d~-~~~A~~iGAvNTi~~~-~G~NTD~~--------G~~~~l~~~--~--- 106 (253)
T 3u62_A 42 FDTEIRRILEEYDGFNATIPHKERVMRYVEP-SEDAQRIKAVNCVFRG-KGYNTDWV--------GVVKSLEGV--E--- 106 (253)
T ss_dssp HHHHHHHHHHHCSEEEECTTCTTGGGGGSEE-CHHHHHHTCCCEEETT-EEECCHHH--------HHHHHTTTC--C---
T ss_pred HHHHHHHHhhCCCceeecCChHHHHHHHhCC-CHHHHHcCcceEeecC-EEEcchHH--------HHHHHHHhc--C---
Confidence 56777776633422 25566666 67666550 000001 33444433 566666543 4
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLW 414 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~ 414 (623)
+++ +++|+|||.+|.+|+..|... |. ++|+++|+. .++ .+.+++ .+. ..
T Consensus 107 ~~~-~vliiGaGg~a~ai~~~L~~~-----G~---------~~I~v~nR~----~~k------a~~la~---~~~---~~ 155 (253)
T 3u62_A 107 VKE-PVVVVGAGGAARAVIYALLQM-----GV---------KDIWVVNRT----IER------AKALDF---PVK---IF 155 (253)
T ss_dssp CCS-SEEEECCSHHHHHHHHHHHHT-----TC---------CCEEEEESC----HHH------HHTCCS---SCE---EE
T ss_pred CCC-eEEEECcHHHHHHHHHHHHHc-----CC---------CEEEEEeCC----HHH------HHHHHH---Hcc---cC
Confidence 678 999999999999988877763 74 569999884 111 111221 100 01
Q ss_pred CCCCHHHHHhhcCCcEEEeccC
Q 040403 415 EGASLVEVVQQVKPDVLLGLSA 436 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLIG~S~ 436 (623)
...++.++++ ++|++|-++.
T Consensus 156 ~~~~~~~~~~--~aDiVInatp 175 (253)
T 3u62_A 156 SLDQLDEVVK--KAKSLFNTTS 175 (253)
T ss_dssp EGGGHHHHHH--TCSEEEECSS
T ss_pred CHHHHHhhhc--CCCEEEECCC
Confidence 1235778888 7999997653
No 73
>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*
Probab=90.99 E-value=0.89 Score=46.27 Aligned_cols=103 Identities=15% Similarity=0.169 Sum_probs=61.8
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLW 414 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~ 414 (623)
+...||.|+|+|..|..+|..|... |... ..+++++|+.- + ....+.+.+ .. ..
T Consensus 20 ~~~mkI~iIG~G~mG~ala~~L~~~-----G~~~------~~~V~v~~r~~----~----~~~~~~l~~--~G-----~~ 73 (322)
T 2izz_A 20 FQSMSVGFIGAGQLAFALAKGFTAA-----GVLA------AHKIMASSPDM----D----LATVSALRK--MG-----VK 73 (322)
T ss_dssp --CCCEEEESCSHHHHHHHHHHHHT-----TSSC------GGGEEEECSCT----T----SHHHHHHHH--HT-----CE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC-----CCCC------cceEEEECCCc----c----HHHHHHHHH--cC-----CE
Confidence 4456899999999999999988764 7421 14588888731 0 011122221 11 11
Q ss_pred CCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCC
Q 040403 415 EGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTN 467 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~ 467 (623)
...+..|+++ +.|++| ++. +....+++++.++....+..+|..+||..+
T Consensus 74 ~~~~~~e~~~--~aDvVi-lav-~~~~~~~vl~~l~~~l~~~~ivvs~s~gi~ 122 (322)
T 2izz_A 74 LTPHNKETVQ--HSDVLF-LAV-KPHIIPFILDEIGADIEDRHIVVSCAAGVT 122 (322)
T ss_dssp EESCHHHHHH--HCSEEE-ECS-CGGGHHHHHHHHGGGCCTTCEEEECCTTCC
T ss_pred EeCChHHHhc--cCCEEE-EEe-CHHHHHHHHHHHHhhcCCCCEEEEeCCCCC
Confidence 2346778887 678776 332 234567888877323345668888988874
No 74
>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5
Probab=90.81 E-value=0.4 Score=47.83 Aligned_cols=49 Identities=24% Similarity=0.293 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 318 VAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 318 lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
-.|++.+++-.|.+ +++.+++|+|||.+|..+|..+... | .+++++|+.
T Consensus 103 ~~G~~~~L~~~~~~---l~~k~vlViGaGg~g~a~a~~L~~~-----G----------~~V~v~~R~ 151 (271)
T 1nyt_A 103 GVGLLSDLERLSFI---RPGLRILLIGAGGASRGVLLPLLSL-----D----------CAVTITNRT 151 (271)
T ss_dssp HHHHHHHHHHHTCC---CTTCEEEEECCSHHHHHHHHHHHHT-----T----------CEEEEECSS
T ss_pred HHHHHHHHHhcCcC---cCCCEEEEECCcHHHHHHHHHHHHc-----C----------CEEEEEECC
Confidence 56777778877877 8999999999998887777776653 6 358888874
No 75
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*
Probab=90.71 E-value=0.15 Score=52.41 Aligned_cols=36 Identities=14% Similarity=0.282 Sum_probs=33.2
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
|++.||+|+|+|..|.-+|..|+.+ |+ .+|.++|.+
T Consensus 34 L~~~~VlVvGaGGlGs~va~~La~a-----GV---------G~i~lvD~D 69 (292)
T 3h8v_A 34 IRTFAVAIVGVGGVGSVTAEMLTRC-----GI---------GKLLLFDYD 69 (292)
T ss_dssp GGGCEEEEECCSHHHHHHHHHHHHH-----TC---------SEEEEECCC
T ss_pred HhCCeEEEECcCHHHHHHHHHHHHc-----CC---------CEEEEECCC
Confidence 8899999999999999999999987 95 789999986
No 76
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=90.50 E-value=0.65 Score=44.59 Aligned_cols=93 Identities=11% Similarity=0.066 Sum_probs=58.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEE-EccCCcccCCCCCCChhhHHhHHHhhhhcccccCCC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWV-VDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEG 416 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~l-vD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~ 416 (623)
.||.|+|+|..|..+|..+... |. ++++ +|++ .+..+.+++.. . ....
T Consensus 24 mkI~IIG~G~mG~~la~~l~~~-----g~----------~V~~v~~r~----------~~~~~~l~~~~-g-----~~~~ 72 (220)
T 4huj_A 24 TTYAIIGAGAIGSALAERFTAA-----QI----------PAIIANSRG----------PASLSSVTDRF-G-----ASVK 72 (220)
T ss_dssp CCEEEEECHHHHHHHHHHHHHT-----TC----------CEEEECTTC----------GGGGHHHHHHH-T-----TTEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC----------EEEEEECCC----------HHHHHHHHHHh-C-----CCcc
Confidence 5899999999999999988764 73 3444 5653 11122333211 1 1112
Q ss_pred CCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCC
Q 040403 417 ASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTN 467 (623)
Q Consensus 417 ~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~ 467 (623)
.+..++++ ++|++|= + ++....+++++.+ +. .+..+|+.++||..
T Consensus 73 ~~~~~~~~--~aDvVil-a-vp~~~~~~v~~~l-~~-~~~~ivi~~~~g~~ 117 (220)
T 4huj_A 73 AVELKDAL--QADVVIL-A-VPYDSIADIVTQV-SD-WGGQIVVDASNAID 117 (220)
T ss_dssp ECCHHHHT--TSSEEEE-E-SCGGGHHHHHTTC-SC-CTTCEEEECCCCBC
T ss_pred cChHHHHh--cCCEEEE-e-CChHHHHHHHHHh-hc-cCCCEEEEcCCCCC
Confidence 34556676 6888873 3 2444568888888 44 45669999999984
No 77
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Probab=90.44 E-value=0.26 Score=50.21 Aligned_cols=106 Identities=15% Similarity=0.199 Sum_probs=64.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhc-ccccCCC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEIS-RQGLWEG 416 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~-~~~~~~~ 416 (623)
.||.|+|||+.|.++|..+... |+ .+++++|.+- ++ +......+.+...... .......
T Consensus 5 ~kI~VIGaG~~G~~ia~~la~~-----g~---------~~V~l~D~~~----~~--~~~~~~~l~~~~~~~~~~~~i~~t 64 (317)
T 2ewd_A 5 RKIAVIGSGQIGGNIAYIVGKD-----NL---------ADVVLFDIAE----GI--PQGKALDITHSMVMFGSTSKVIGT 64 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----TC---------CEEEEECSSS----SH--HHHHHHHHHHHHHHHTCCCCEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC---------ceEEEEeCCc----hH--HHHHHHHHHhhhhhcCCCcEEEEC
Confidence 5899999999999999998775 74 2499999851 11 1111111111100000 0001112
Q ss_pred CCHHHHHhhcCCcEEEeccCCCCC--------------CCHHHHHHcccCCCCCCEEEecCCCCC
Q 040403 417 ASLVEVVQQVKPDVLLGLSAVGGL--------------FSKEVLEAMRGSTSTRPAIFAMSNPTN 467 (623)
Q Consensus 417 ~~L~e~V~~vkptvLIG~S~~~g~--------------Ft~evv~~M~a~~~erPIIFaLSNPt~ 467 (623)
.++ ++++ ++|++|=+.+.|.. +.+++++.+ .++++.-+|+-.|||..
T Consensus 65 ~d~-~a~~--~aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i-~~~~~~~iii~~sNp~~ 125 (317)
T 2ewd_A 65 DDY-ADIS--GSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGV-KKYCPNAFVICITNPLD 125 (317)
T ss_dssp SCG-GGGT--TCSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHH-HHHCTTSEEEECCSSHH
T ss_pred CCH-HHhC--CCCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHH-HHHCCCcEEEEeCChHH
Confidence 456 7777 88988865544331 246777888 67788889999999973
No 78
>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*
Probab=90.41 E-value=0.16 Score=55.48 Aligned_cols=44 Identities=25% Similarity=0.263 Sum_probs=30.6
Q ss_pred HHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccCCcEEEecCC
Q 040403 443 KEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGS 490 (623)
Q Consensus 443 ~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~Grai~AtGs 490 (623)
.++++.| .++|+.-+++=.|||. .-+|- -+.++++=|+|=-+-|
T Consensus 140 ~~i~~~i-~~~~P~A~~in~tNP~--~i~t~-a~~~~~~~k~vGlC~~ 183 (477)
T 3u95_A 140 LEIAEKM-KKMAPKAYLMQTANPV--FEITQ-AVRRWTGANIIGFCHG 183 (477)
T ss_dssp HHHHHHH-HHHCTTCEEEECSSCH--HHHHH-HHHHHHCCCEEEECCG
T ss_pred HHHHHHH-HhhCCCeEEEEecChH--HHHHH-HHHHhCCCCeEEECCC
Confidence 6899999 9999999999999998 34432 3455554444433333
No 79
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}
Probab=90.38 E-value=0.34 Score=49.37 Aligned_cols=121 Identities=17% Similarity=0.254 Sum_probs=68.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhh----cccccC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEI----SRQGLW 414 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~----~~~~~~ 414 (623)
||.|+|||+.|.++|..+... |+ ...++++|.+-- + + +..+....+. ......
T Consensus 2 kI~VIGaG~vG~~la~~la~~-----g~--------~~eV~L~D~~~~----~--~----~~~~~~l~~~~~~~~~~~i~ 58 (304)
T 2v6b_A 2 KVGVVGTGFVGSTAAFALVLR-----GS--------CSELVLVDRDED----R--A----QAEAEDIAHAAPVSHGTRVW 58 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-----TC--------CSEEEEECSSHH----H--H----HHHHHHHTTSCCTTSCCEEE
T ss_pred EEEEECCCHHHHHHHHHHHhC-----CC--------CCEEEEEeCCHH----H--H----HHHHHhhhhhhhhcCCeEEE
Confidence 899999999999999877653 64 246999998520 0 0 0111110000 000000
Q ss_pred CCCCHHHHHhhcCCcEEEeccCCCCC--------------CCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhccc
Q 040403 415 EGASLVEVVQQVKPDVLLGLSAVGGL--------------FSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIV 480 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLIG~S~~~g~--------------Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT 480 (623)
..+ .++++ +.|++|=+.+.+.. .-+++++.| .++++.-+|+-.|||.. .....+.+.+
T Consensus 59 -~~~-~~a~~--~aDvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i-~~~~p~~~vi~~tNP~~---~~~~~~~~~~ 130 (304)
T 2v6b_A 59 -HGG-HSELA--DAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQI-TRAAPDAVLLVTSNPVD---LLTDLATQLA 130 (304)
T ss_dssp -EEC-GGGGT--TCSEEEECC------------CHHHHHHHHHHHHHHH-HHHCSSSEEEECSSSHH---HHHHHHHHHS
T ss_pred -ECC-HHHhC--CCCEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHH-HHhCCCeEEEEecCchH---HHHHHHHHhC
Confidence 123 35666 78998855543322 127788888 77788878877999983 3344444544
Q ss_pred CCcEEEecCC
Q 040403 481 GDNIIFASGS 490 (623)
Q Consensus 481 ~Grai~AtGs 490 (623)
.-.-+|.+|.
T Consensus 131 ~~~rviG~gt 140 (304)
T 2v6b_A 131 PGQPVIGSGT 140 (304)
T ss_dssp CSSCEEECTT
T ss_pred ChhcEEeCCc
Confidence 4445666654
No 80
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Probab=90.34 E-value=1.7 Score=45.58 Aligned_cols=149 Identities=18% Similarity=0.200 Sum_probs=93.1
Q ss_pred CCce-eeecccCCCchH-HHHHHHHhccCCccccC-c--chhHHHHHHHHHHHHHH--------------------hCCC
Q 040403 277 WPNV-IVQFEDFQSKWA-FKLLQRYRYKYRMFNDD-V--QGTAGVAVAGLLGAVRA--------------------QGRS 331 (623)
Q Consensus 277 ~P~~-lIqfEDf~~~nA-f~lL~ryr~~~~~FNDD-i--QGTaaV~lAgll~A~r~--------------------~g~~ 331 (623)
.|+. +|+.-..+..|- ...+.+.+..+.+.|-- . +.+|=-+++.+|+..|- .+..
T Consensus 82 ~~~Lk~I~~~~~G~d~id~~~~~~~~~gI~V~n~pg~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~ 161 (364)
T 2j6i_A 82 AKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYD 161 (364)
T ss_dssp CTTCCEEEESSSCCTTBCHHHHHHHTCCCEEEECTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCC
T ss_pred CCCCeEEEECCcccccccHHHHHhcCCCEEEEECCCcCcHHHHHHHHHHHHHHHhChHHHHHHHHhCCCCcCcccCCccc
Confidence 4663 566555555552 12222221246655532 2 23444578888888762 2445
Q ss_pred CCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhccc
Q 040403 332 MIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQ 411 (623)
Q Consensus 332 ~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~ 411 (623)
|.+.+|.|+|.|..|..+|+.+... |+ ++++.+|+... +...+.. ..
T Consensus 162 ---l~g~tvgIIG~G~IG~~vA~~l~~~-----G~---------~~V~~~d~~~~-----------~~~~~~~-~g---- 208 (364)
T 2j6i_A 162 ---IEGKTIATIGAGRIGYRVLERLVPF-----NP---------KELLYYDYQAL-----------PKDAEEK-VG---- 208 (364)
T ss_dssp ---STTCEEEEECCSHHHHHHHHHHGGG-----CC---------SEEEEECSSCC-----------CHHHHHH-TT----
T ss_pred ---CCCCEEEEECcCHHHHHHHHHHHhC-----CC---------cEEEEECCCcc-----------chhHHHh-cC----
Confidence 9999999999999999999988753 74 33777886411 1112211 01
Q ss_pred ccCCCCCHHHHHhhcCCcEEEeccC----CCCCCCHHHHHHcccCCCCCCEEEecCCC
Q 040403 412 GLWEGASLVEVVQQVKPDVLLGLSA----VGGLFSKEVLEAMRGSTSTRPAIFAMSNP 465 (623)
Q Consensus 412 ~~~~~~~L~e~V~~vkptvLIG~S~----~~g~Ft~evv~~M~a~~~erPIIFaLSNP 465 (623)
.....+|.|+++ +.|+++=+-- ..+.|+++.+..| .+.-+|.-.|+-
T Consensus 209 -~~~~~~l~ell~--~aDvV~l~~P~t~~t~~li~~~~l~~m----k~ga~lIn~arG 259 (364)
T 2j6i_A 209 -ARRVENIEELVA--QADIVTVNAPLHAGTKGLINKELLSKF----KKGAWLVNTARG 259 (364)
T ss_dssp -EEECSSHHHHHH--TCSEEEECCCCSTTTTTCBCHHHHTTS----CTTEEEEECSCG
T ss_pred -cEecCCHHHHHh--cCCEEEECCCCChHHHHHhCHHHHhhC----CCCCEEEECCCC
Confidence 112347999998 8999985432 2278999999999 567788888874
No 81
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1
Probab=90.23 E-value=0.74 Score=48.69 Aligned_cols=159 Identities=12% Similarity=0.111 Sum_probs=96.8
Q ss_pred hHhHHHHHHHHHHhCCceeeecccCCCchHHHHHHHHhccC-CccccC---------cchhHHHHHHHHHHHHHHh-CC-
Q 040403 263 VSVIDEFMEAIFTRWPNVIVQFEDFQSKWAFKLLQRYRYKY-RMFNDD---------VQGTAGVAVAGLLGAVRAQ-GR- 330 (623)
Q Consensus 263 ~~~vdefv~av~~~~P~~lIqfEDf~~~nAf~lL~ryr~~~-~~FNDD---------iQGTaaV~lAgll~A~r~~-g~- 330 (623)
++++..|.+++..+.-. .|-=+|++..- +.+...-+++ ++---- ..-||-=+.-++..+++.. |.
T Consensus 93 ~~~~r~~~~~~~~l~g~-~i~A~D~Gt~~--~~m~~l~~~~~~~tGK~~~~ggs~~~~~aTg~GV~~~~~~~~~~~~G~~ 169 (364)
T 1leh_A 93 EDMFRALGRFIQGLNGR-YITAEDVGTTV--DDMDLIHQETDYVTGISPAFGSSGNPSPVTAYGVYRGMKAAAKEAFGSD 169 (364)
T ss_dssp HHHHHHHHHHHHTTTTS-EEBCBCTTCCH--HHHHHHHTTCSCBCSCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHhcCc-eEEcccCCCCH--HHHHHHHHhcchhcccccccCCCCCcccchhhHHHHHHHHHHHhhcccc
Confidence 45677777777777622 55668887543 2444555554 221111 1235544555666666664 75
Q ss_pred CCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcc
Q 040403 331 SMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISR 410 (623)
Q Consensus 331 ~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~ 410 (623)
+ |++.+|+|.|+|..|..+|+.+.+. |. ++++.|++ .+..+.+++.- .
T Consensus 170 ~---L~GktV~V~G~G~VG~~~A~~L~~~-----Ga----------kVvv~D~~----------~~~l~~~a~~~-g--- 217 (364)
T 1leh_A 170 S---LEGLAVSVQGLGNVAKALCKKLNTE-----GA----------KLVVTDVN----------KAAVSAAVAEE-G--- 217 (364)
T ss_dssp C---CTTCEEEEECCSHHHHHHHHHHHHT-----TC----------EEEEECSC----------HHHHHHHHHHH-C---
T ss_pred C---CCcCEEEEECchHHHHHHHHHHHHC-----CC----------EEEEEcCC----------HHHHHHHHHHc-C---
Confidence 6 9999999999999999999998764 73 47788852 11123344311 0
Q ss_pred cccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCC-CC
Q 040403 411 QGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSN-PT 466 (623)
Q Consensus 411 ~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSN-Pt 466 (623)
. ...++.+.. ..+.|++|=++ ..+.++++.++.| ...+|.--+| |+
T Consensus 218 --a-~~v~~~~ll-~~~~DIvip~a-~~~~I~~~~~~~l-----g~~iV~e~An~p~ 264 (364)
T 1leh_A 218 --A-DAVAPNAIY-GVTCDIFAPCA-LGAVLNDFTIPQL-----KAKVIAGSADNQL 264 (364)
T ss_dssp --C-EECCGGGTT-TCCCSEEEECS-CSCCBSTTHHHHC-----CCSEECCSCSCCB
T ss_pred --C-EEEChHHHh-ccCCcEeeccc-hHHHhCHHHHHhC-----CCcEEEeCCCCCc
Confidence 0 111222322 25789999654 6789999999988 2357776666 54
No 82
>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Probab=90.16 E-value=0.32 Score=47.59 Aligned_cols=106 Identities=18% Similarity=0.239 Sum_probs=60.5
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcc--cCCC-CCCC-hhhHHhHHHhhhhcc
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLI--TEDR-ENID-PDAKPFARKVNEISR 410 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi--~~~r-~~l~-~~~~~fA~~~~~~~~ 410 (623)
+...||.|+|+|..|.++|..|... | -+++++|++--- .+.. ..+. .....++. ..
T Consensus 17 ~~~~kIgiIG~G~mG~alA~~L~~~-----G----------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~---~~-- 76 (245)
T 3dtt_A 17 FQGMKIAVLGTGTVGRTMAGALADL-----G----------HEVTIGTRDPKATLARAEPDAMGAPPFSQWLP---EH-- 76 (245)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHT-----T----------CEEEEEESCHHHHHTCC-------CCHHHHGG---GS--
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHC-----C----------CEEEEEeCChhhhhhhhhhhhhcchhhhHHHh---hc--
Confidence 7889999999999999999998874 7 357888875210 0000 0000 00122221 10
Q ss_pred cccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHc-ccCCCCCCEEEecCCCC
Q 040403 411 QGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAM-RGSTSTRPAIFAMSNPT 466 (623)
Q Consensus 411 ~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M-~a~~~erPIIFaLSNPt 466 (623)
......++.|+++ ++|++| ++..+. ...++++.+ +... +..+|.-+|||.
T Consensus 77 -~~~~~~~~~e~~~--~aDvVi-lavp~~-~~~~~~~~i~~~~l-~g~ivi~~s~~~ 127 (245)
T 3dtt_A 77 -PHVHLAAFADVAA--GAELVV-NATEGA-SSIAALTAAGAENL-AGKILVDIANPL 127 (245)
T ss_dssp -TTCEEEEHHHHHH--HCSEEE-ECSCGG-GHHHHHHHHCHHHH-TTSEEEECCCCE
T ss_pred -CceeccCHHHHHh--cCCEEE-EccCcH-HHHHHHHHhhhhhc-CCCEEEECCCCC
Confidence 0123457899998 688887 332233 334566554 2122 566999999974
No 83
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=90.01 E-value=1.1 Score=46.93 Aligned_cols=102 Identities=17% Similarity=0.170 Sum_probs=59.8
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHh-hh--hcccc-
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKV-NE--ISRQG- 412 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~-~~--~~~~~- 412 (623)
..||.|+|+|+-|..+|..|... | .+++++|++- +....+.+.. +. .++..
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~-----G----------~~V~l~~r~~----------~~~~~i~~~~~~~~~l~g~~l 83 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARK-----G----------QKVRLWSYES----------DHVDEMQAEGVNNRYLPNYPF 83 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTT-----T----------CCEEEECSCH----------HHHHHHHHHSSBTTTBTTCCC
T ss_pred CCeEEEECccHHHHHHHHHHHHC-----C----------CeEEEEeCCH----------HHHHHHHHcCCCcccCCCCcc
Confidence 36899999999999999988764 6 3467777631 0111111100 00 00000
Q ss_pred ---cCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCC
Q 040403 413 ---LWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTN 467 (623)
Q Consensus 413 ---~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~ 467 (623)
.....++.|+++ ++|++| ++ +|-.+.+++++.++....+..+|..++|-..
T Consensus 84 ~~~i~~t~d~~ea~~--~aDvVi-la-Vp~~~~~~vl~~i~~~l~~~~ivvs~~kGi~ 137 (356)
T 3k96_A 84 PETLKAYCDLKASLE--GVTDIL-IV-VPSFAFHEVITRMKPLIDAKTRIAWGTKGLA 137 (356)
T ss_dssp CTTEEEESCHHHHHT--TCCEEE-EC-CCHHHHHHHHHHHGGGCCTTCEEEECCCSCB
T ss_pred CCCeEEECCHHHHHh--cCCEEE-EC-CCHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 011356888887 677776 33 3334677888887333445667788888554
No 84
>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6
Probab=89.83 E-value=0.97 Score=45.23 Aligned_cols=98 Identities=13% Similarity=0.034 Sum_probs=57.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEcc--CCcccCCCCCCChhhHHhHHHhhhhc-c--c-c
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDA--KGLITEDRENIDPDAKPFARKVNEIS-R--Q-G 412 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~--~GLi~~~r~~l~~~~~~fA~~~~~~~-~--~-~ 412 (623)
||.|+|+|..|..+|..|... | .+++++|+ +.- ....+.+...... + + .
T Consensus 2 ~I~iiG~G~mG~~~a~~L~~~-----g----------~~V~~~~r~~~~~----------~~~~~~~~~~~~~~g~~~~~ 56 (335)
T 1txg_A 2 IVSILGAGAMGSALSVPLVDN-----G----------NEVRIWGTEFDTE----------ILKSISAGREHPRLGVKLNG 56 (335)
T ss_dssp EEEEESCCHHHHHHHHHHHHH-----C----------CEEEEECCGGGHH----------HHHHHHTTCCBTTTTBCCCS
T ss_pred EEEEECcCHHHHHHHHHHHhC-----C----------CeEEEEEccCCHH----------HHHHHHHhCcCcccCccccc
Confidence 799999999999999988765 6 35888887 310 0111110000000 0 0 0
Q ss_pred cCCCC--CHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCC
Q 040403 413 LWEGA--SLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPT 466 (623)
Q Consensus 413 ~~~~~--~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt 466 (623)
..... ++.|+++ ++|++|=+- +.-..+++++.+ ....+..+|..++|-.
T Consensus 57 ~~~~~~~~~~~~~~--~~D~vi~~v--~~~~~~~v~~~i-~~l~~~~~vv~~~ng~ 107 (335)
T 1txg_A 57 VEIFWPEQLEKCLE--NAEVVLLGV--STDGVLPVMSRI-LPYLKDQYIVLISKGL 107 (335)
T ss_dssp EEEECGGGHHHHHT--TCSEEEECS--CGGGHHHHHHHH-TTTCCSCEEEECCCSE
T ss_pred eEEecHHhHHHHHh--cCCEEEEcC--ChHHHHHHHHHH-hcCCCCCEEEEEcCcC
Confidence 01122 5777777 788777332 223668888888 3345567888888865
No 85
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}
Probab=89.73 E-value=1.1 Score=47.02 Aligned_cols=98 Identities=19% Similarity=0.276 Sum_probs=61.8
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLW 414 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~ 414 (623)
++..||.|+|.|..|..+|..|... | -+++++|+. .+....++. .. ..
T Consensus 20 m~~mkIgiIGlG~mG~~~A~~L~~~-----G----------~~V~v~dr~----------~~~~~~l~~--~g-----~~ 67 (358)
T 4e21_A 20 FQSMQIGMIGLGRMGADMVRRLRKG-----G----------HECVVYDLN----------VNAVQALER--EG-----IA 67 (358)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHT-----T----------CEEEEECSC----------HHHHHHHHT--TT-----CB
T ss_pred hcCCEEEEECchHHHHHHHHHHHhC-----C----------CEEEEEeCC----------HHHHHHHHH--CC-----CE
Confidence 4567999999999999999988874 7 357777873 111122221 01 22
Q ss_pred CCCCHHHHHhhc-CCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCC
Q 040403 415 EGASLVEVVQQV-KPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPT 466 (623)
Q Consensus 415 ~~~~L~e~V~~v-kptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt 466 (623)
...++.|+++.. +||++|=+- ..+ -.+++++.+.....+.-||.-+||-.
T Consensus 68 ~~~s~~e~~~~a~~~DvVi~~v-p~~-~v~~vl~~l~~~l~~g~iiId~st~~ 118 (358)
T 4e21_A 68 GARSIEEFCAKLVKPRVVWLMV-PAA-VVDSMLQRMTPLLAANDIVIDGGNSH 118 (358)
T ss_dssp CCSSHHHHHHHSCSSCEEEECS-CGG-GHHHHHHHHGGGCCTTCEEEECSSCC
T ss_pred EeCCHHHHHhcCCCCCEEEEeC-CHH-HHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence 356788888854 568777332 333 67788877733345667888777743
No 86
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Probab=89.39 E-value=0.97 Score=46.35 Aligned_cols=121 Identities=15% Similarity=0.185 Sum_probs=73.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGA 417 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~ 417 (623)
.||.|+|||..|.|+|..++.. |+ ...++|+|.+- +.. .....+.+-... . .....
T Consensus 15 ~kV~ViGaG~vG~~~a~~l~~~-----g~--------~~ev~L~Di~~----~~~---g~a~dl~~~~~~--~--i~~t~ 70 (303)
T 2i6t_A 15 NKITVVGGGELGIACTLAISAK-----GI--------ADRLVLLDLSE----GTK---GATMDLEIFNLP--N--VEISK 70 (303)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----TC--------CSEEEEECCC------------CHHHHHHHTCT--T--EEEES
T ss_pred CEEEEECCCHHHHHHHHHHHhc-----CC--------CCEEEEEcCCc----chH---HHHHHHhhhcCC--C--eEEeC
Confidence 6899999999999999998754 64 25799999852 111 111122211000 0 11235
Q ss_pred CHHHHHhhcCCcEEEeccCCC--CC-----------CCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccC--C
Q 040403 418 SLVEVVQQVKPDVLLGLSAVG--GL-----------FSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVG--D 482 (623)
Q Consensus 418 ~L~e~V~~vkptvLIG~S~~~--g~-----------Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~--G 482 (623)
++ ++++ +.|++|=+.+.+ |- .-+++++.| .++++.-+|+=.|||.. ...+-+++.+. -
T Consensus 71 d~-~~l~--~aD~Vi~aag~~~pG~tR~dl~~~n~~i~~~i~~~i-~~~~p~a~iiv~sNP~~---~~t~~~~~~~~~p~ 143 (303)
T 2i6t_A 71 DL-SASA--HSKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPAL-GHYSQHSVLLVASQPVE---IMTYVTWKLSTFPA 143 (303)
T ss_dssp CG-GGGT--TCSEEEECCCC----CCHHHHHHHHHHHHHHHHHHH-HHHTTTCEEEECSSSHH---HHHHHHHHHHCCCG
T ss_pred CH-HHHC--CCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHhCCCeEEEEcCChHH---HHHHHHHHhcCCCH
Confidence 66 6677 899998554432 21 136788888 78889999888999983 44445555321 1
Q ss_pred cEEEecC
Q 040403 483 NIIFASG 489 (623)
Q Consensus 483 rai~AtG 489 (623)
.-+|++|
T Consensus 144 ~rviG~g 150 (303)
T 2i6t_A 144 NRVIGIG 150 (303)
T ss_dssp GGEEECT
T ss_pred HHeeCCC
Confidence 2356665
No 87
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*
Probab=89.38 E-value=0.93 Score=49.31 Aligned_cols=103 Identities=16% Similarity=0.191 Sum_probs=64.3
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLW 414 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~ 414 (623)
.+..+|.|+|+|..|..+|..|.+. |. +++++|+. .+....+.+.... .+ ..
T Consensus 13 ~~~~~IgvIGlG~MG~~lA~~La~~-----G~----------~V~v~~r~----------~~~~~~l~~~~~~-~g--i~ 64 (480)
T 2zyd_A 13 MSKQQIGVVGMAVMGRNLALNIESR-----GY----------TVSIFNRS----------REKTEEVIAENPG-KK--LV 64 (480)
T ss_dssp --CBSEEEECCSHHHHHHHHHHHTT-----TC----------CEEEECSS----------HHHHHHHHHHSTT-SC--EE
T ss_pred cCCCeEEEEccHHHHHHHHHHHHhC-----CC----------eEEEEeCC----------HHHHHHHHhhCCC-CC--eE
Confidence 5678999999999999999998764 73 47777763 1112233321000 00 12
Q ss_pred CCCCHHHHHhhc-CCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCC
Q 040403 415 EGASLVEVVQQV-KPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPT 466 (623)
Q Consensus 415 ~~~~L~e~V~~v-kptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt 466 (623)
...++.|+++.. +||++| ++-.++..++++++.++....+.-||.-+||-.
T Consensus 65 ~~~s~~e~v~~l~~aDvVi-l~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~g~ 116 (480)
T 2zyd_A 65 PYYTVKEFVESLETPRRIL-LMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTF 116 (480)
T ss_dssp ECSSHHHHHHTBCSSCEEE-ECSCSSSHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred EeCCHHHHHhCCCCCCEEE-EECCCHHHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 346788988842 388877 443445667888888733334566888899865
No 88
>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}
Probab=89.36 E-value=0.83 Score=46.46 Aligned_cols=99 Identities=15% Similarity=0.199 Sum_probs=59.6
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhh--hhcc--cc
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVN--EISR--QG 412 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~--~~~~--~~ 412 (623)
+.||.|+|+|+-|..+|..|..+ | .+++++|+.. +....+.+... ..++ ++
T Consensus 14 ~~kI~iIG~G~mG~ala~~L~~~-----G----------~~V~~~~r~~----------~~~~~l~~~g~~~~~~~~~~~ 68 (335)
T 1z82_A 14 EMRFFVLGAGSWGTVFAQMLHEN-----G----------EEVILWARRK----------EIVDLINVSHTSPYVEESKIT 68 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-----T----------CEEEEECSSH----------HHHHHHHHHSCBTTBTTCCCC
T ss_pred CCcEEEECcCHHHHHHHHHHHhC-----C----------CeEEEEeCCH----------HHHHHHHHhCCcccCCCCeee
Confidence 57999999999999999998874 6 3578888731 11122221100 0000 00
Q ss_pred cCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCCC
Q 040403 413 LWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNN 468 (623)
Q Consensus 413 ~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~ 468 (623)
.....++.| ++ ..|++| ++ ++....+++++.+ .. +..+|..++|..+.
T Consensus 69 ~~~~~~~~~-~~--~aDvVi-l~-vk~~~~~~v~~~l-~~--~~~~vv~~~nGi~~ 116 (335)
T 1z82_A 69 VRATNDLEE-IK--KEDILV-IA-IPVQYIREHLLRL-PV--KPSMVLNLSKGIEI 116 (335)
T ss_dssp SEEESCGGG-CC--TTEEEE-EC-SCGGGHHHHHTTC-SS--CCSEEEECCCCCCT
T ss_pred EEEeCCHHH-hc--CCCEEE-EE-CCHHHHHHHHHHh-Cc--CCCEEEEEeCCCCC
Confidence 011235556 55 678666 33 2335678888888 44 56688899997654
No 89
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A
Probab=89.02 E-value=0.62 Score=46.52 Aligned_cols=82 Identities=24% Similarity=0.326 Sum_probs=55.6
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhh
Q 040403 319 AGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDA 398 (623)
Q Consensus 319 Agll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~ 398 (623)
.|++.+++-.|.. +++.+++|+|+|.+|..+|..|... |. +++++|+.- +..
T Consensus 114 ~G~~~~l~~~~~~---~~~~~v~iiGaG~~g~aia~~L~~~-----g~----------~V~v~~r~~----------~~~ 165 (275)
T 2hk9_A 114 IGFLKSLKSLIPE---VKEKSILVLGAGGASRAVIYALVKE-----GA----------KVFLWNRTK----------EKA 165 (275)
T ss_dssp HHHHHHHHHHCTT---GGGSEEEEECCSHHHHHHHHHHHHH-----TC----------EEEEECSSH----------HHH
T ss_pred HHHHHHHHHhCCC---cCCCEEEEECchHHHHHHHHHHHHc-----CC----------EEEEEECCH----------HHH
Confidence 4788888877877 8999999999999999998888764 62 588888741 111
Q ss_pred HHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccC
Q 040403 399 KPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSA 436 (623)
Q Consensus 399 ~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~ 436 (623)
+.+++ .+. .....++.++++ ++|++|-+..
T Consensus 166 ~~l~~---~~g---~~~~~~~~~~~~--~aDiVi~atp 195 (275)
T 2hk9_A 166 IKLAQ---KFP---LEVVNSPEEVID--KVQVIVNTTS 195 (275)
T ss_dssp HHHTT---TSC---EEECSCGGGTGG--GCSEEEECSS
T ss_pred HHHHH---HcC---CeeehhHHhhhc--CCCEEEEeCC
Confidence 22321 100 011226777777 7999997664
No 90
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*
Probab=88.94 E-value=1.4 Score=45.18 Aligned_cols=101 Identities=20% Similarity=0.179 Sum_probs=64.4
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCC--
Q 040403 339 KIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWE-- 415 (623)
Q Consensus 339 riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~-- 415 (623)
||+|+|| |..|..++..|+. . |+ ...++++|.+-. . .....+.+ .........
T Consensus 2 KI~IiGa~G~VG~~la~~L~~----~-~~--------~~ev~L~Di~~~--~------~~a~dL~~---~~~~~~l~~~~ 57 (314)
T 1mld_A 2 KVAVLGASGGIGQPLSLLLKN----S-PL--------VSRLTLYDIAHT--P------GVAADLSH---IETRATVKGYL 57 (314)
T ss_dssp EEEEETTTSTTHHHHHHHHHT----C-TT--------CSEEEEEESSSH--H------HHHHHHTT---SSSSCEEEEEE
T ss_pred EEEEECCCChHHHHHHHHHHh----C-CC--------CcEEEEEeCCcc--H------HHHHHHhc---cCcCceEEEec
Confidence 8999998 9999998877654 2 54 256999998630 0 00011110 000000011
Q ss_pred -CCCHHHHHhhcCCcEEEeccCCC---C-----------CCCHHHHHHcccCCCCCCEEEecCCCC
Q 040403 416 -GASLVEVVQQVKPDVLLGLSAVG---G-----------LFSKEVLEAMRGSTSTRPAIFAMSNPT 466 (623)
Q Consensus 416 -~~~L~e~V~~vkptvLIG~S~~~---g-----------~Ft~evv~~M~a~~~erPIIFaLSNPt 466 (623)
..++.++++ +.|++|=+.+.+ | ...+++++.| .+++...+|+-.|||.
T Consensus 58 ~t~d~~~a~~--~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i-~~~~p~a~viv~sNPv 120 (314)
T 1mld_A 58 GPEQLPDCLK--GCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAAC-AQHCPDAMICIISNPV 120 (314)
T ss_dssp SGGGHHHHHT--TCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHH-HHHCTTSEEEECSSCH
T ss_pred CCCCHHHHhC--CCCEEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHH-HhhCCCeEEEEECCCc
Confidence 136888998 899998555443 3 2356788888 7788888888899998
No 91
>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2
Probab=88.92 E-value=0.067 Score=58.06 Aligned_cols=132 Identities=16% Similarity=0.191 Sum_probs=77.9
Q ss_pred ceEEEeCcchH-HHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCC-CCChhhHHhHHHhhhhcccccCC
Q 040403 338 QKIVVAGAGSA-GLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRE-NIDPDAKPFARKVNEISRQGLWE 415 (623)
Q Consensus 338 ~riv~~GAGsA-g~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~-~l~~~~~~fA~~~~~~~~~~~~~ 415 (623)
.||.|+|||+. |.+++..|+.. .+ ++.. ..++|+|.+--. ++. .+.+....+... .. .++....
T Consensus 8 ~KIaVIGaGsv~~~al~~~L~~~--~~-~l~~-------~ev~L~Di~~~~--e~~~~~~~~~~~~~~~-~~-~~~~i~~ 73 (450)
T 1s6y_A 8 LKIATIGGGSSYTPELVEGLIKR--YH-ELPV-------GELWLVDIPEGK--EKLEIVGALAKRMVEK-AG-VPIEIHL 73 (450)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHT--TT-TCCE-------EEEEEECCGGGH--HHHHHHHHHHHHHHHH-TT-CCCEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHcC--CC-CCCC-------CEEEEEEcCCCh--HHHHHHHHHHHHHHhh-cC-CCcEEEE
Confidence 58999999997 55555544430 02 5432 579999985200 110 011111122110 00 0111112
Q ss_pred CCCHHHHHhhcCCcEEEeccCCCCC----------------------------------CCHHHHHHcccCCCCCCEEEe
Q 040403 416 GASLVEVVQQVKPDVLLGLSAVGGL----------------------------------FSKEVLEAMRGSTSTRPAIFA 461 (623)
Q Consensus 416 ~~~L~e~V~~vkptvLIG~S~~~g~----------------------------------Ft~evv~~M~a~~~erPIIFa 461 (623)
..++.++++ +.|++|=+.++++. .-+++++.| .++|+.-+|+=
T Consensus 74 t~D~~eal~--gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i-~~~~P~a~ii~ 150 (450)
T 1s6y_A 74 TLDRRRALD--GADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDM-EELCPDAWLIN 150 (450)
T ss_dssp ESCHHHHHT--TCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHH-HHHCTTCEEEE
T ss_pred eCCHHHHhC--CCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHH-HHHCCCeEEEE
Confidence 467999999 89999866654421 135888999 89999999999
Q ss_pred cCCCCCCCCCCHHHHhcccCCcEEEecC
Q 040403 462 MSNPTNNAECTPEEAFSIVGDNIIFASG 489 (623)
Q Consensus 462 LSNPt~~~E~tpeda~~wT~Grai~AtG 489 (623)
.|||. -+..+-+++.+.-.-+|.+|
T Consensus 151 ~tNPv---divT~a~~k~~p~~rViG~c 175 (450)
T 1s6y_A 151 FTNPA---GMVTEAVLRYTKQEKVVGLC 175 (450)
T ss_dssp CSSSH---HHHHHHHHHHCCCCCEEECC
T ss_pred eCCcH---HHHHHHHHHhCCCCCEEEeC
Confidence 99998 24455566666433677665
No 92
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A
Probab=88.85 E-value=3.2 Score=43.52 Aligned_cols=167 Identities=16% Similarity=0.104 Sum_probs=100.2
Q ss_pred CCce-eeecccCCCchHHHHHHHHhccCCccccCc---chhHHHHHHHHHHHHHH--------------------hCCCC
Q 040403 277 WPNV-IVQFEDFQSKWAFKLLQRYRYKYRMFNDDV---QGTAGVAVAGLLGAVRA--------------------QGRSM 332 (623)
Q Consensus 277 ~P~~-lIqfEDf~~~nAf~lL~ryr~~~~~FNDDi---QGTaaV~lAgll~A~r~--------------------~g~~~ 332 (623)
.|+. +|+.-=.+..| ..+-.--+..|.+.|--- +.+|=-+++-+|+..|- .+..
T Consensus 84 ~p~Lk~i~~~g~G~d~-id~~~a~~~gI~V~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~- 161 (351)
T 3jtm_A 84 AKNLKLLLTAGIGSDH-IDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYD- 161 (351)
T ss_dssp CSSCCEEEESSSCCTT-BCHHHHHHTTCEEEECTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHHHHHTTCCC-
T ss_pred CCCCeEEEEeCeeecc-cCHHHHHhcCeeEEECCCcCchHHHHHHHHHHHHHhhCcHHHHHHHHcCCCccccccCCccc-
Confidence 4653 55544444433 222112223466655322 23444578888888763 1345
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccc
Q 040403 333 IDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQG 412 (623)
Q Consensus 333 ~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~ 412 (623)
|.+.+|.|+|.|..|..+|+.+... |+ +++.+|+... + ...+... .
T Consensus 162 --l~gktvGIIG~G~IG~~vA~~l~~~-----G~----------~V~~~dr~~~--------~---~~~~~~~-g----- 207 (351)
T 3jtm_A 162 --LEGKTIGTVGAGRIGKLLLQRLKPF-----GC----------NLLYHDRLQM--------A---PELEKET-G----- 207 (351)
T ss_dssp --STTCEEEEECCSHHHHHHHHHHGGG-----CC----------EEEEECSSCC--------C---HHHHHHH-C-----
T ss_pred --ccCCEEeEEEeCHHHHHHHHHHHHC-----CC----------EEEEeCCCcc--------C---HHHHHhC-C-----
Confidence 9999999999999999999988764 74 4777887421 1 1122110 1
Q ss_pred cCCCCCHHHHHhhcCCcEEEecc----CCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccCCcEEEe
Q 040403 413 LWEGASLVEVVQQVKPDVLLGLS----AVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFA 487 (623)
Q Consensus 413 ~~~~~~L~e~V~~vkptvLIG~S----~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~Grai~A 487 (623)
.....+|.|+++ +.|+++=.- ..-+.|+++.++.| .+..+|.=.|+-..--|---.+|++ +|+.--|
T Consensus 208 ~~~~~~l~ell~--~aDvV~l~~Plt~~t~~li~~~~l~~m----k~gailIN~aRG~~vde~aL~~aL~--~g~i~ga 278 (351)
T 3jtm_A 208 AKFVEDLNEMLP--KCDVIVINMPLTEKTRGMFNKELIGKL----KKGVLIVNNARGAIMERQAVVDAVE--SGHIGGY 278 (351)
T ss_dssp CEECSCHHHHGG--GCSEEEECSCCCTTTTTCBSHHHHHHS----CTTEEEEECSCGGGBCHHHHHHHHH--HTSEEEE
T ss_pred CeEcCCHHHHHh--cCCEEEECCCCCHHHHHhhcHHHHhcC----CCCCEEEECcCchhhCHHHHHHHHH--hCCccEE
Confidence 122357999999 789988432 23478999999999 6778888887743223333334443 3654433
No 93
>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A
Probab=88.75 E-value=1.2 Score=47.81 Aligned_cols=127 Identities=16% Similarity=0.174 Sum_probs=78.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHH-hcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMAR-MLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEG 416 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~-~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~ 416 (623)
.||.|+|||+. ++..++..+.. ..++.. ..|+|+|.+- +| +. ....+++.... ..+.-...
T Consensus 3 ~KI~IIGaG~v---~~~~l~~~l~~~~~~l~~-------~el~L~Di~~----~~--~~-~~~~~~~~~~~-~~~~v~~t 64 (417)
T 1up7_A 3 MRIAVIGGGSS---YTPELVKGLLDISEDVRI-------DEVIFYDIDE----EK--QK-IVVDFVKRLVK-DRFKVLIS 64 (417)
T ss_dssp CEEEEETTTCT---THHHHHHHHHHHTTTSCC-------CEEEEECSCH----HH--HH-HHHHHHHHHHT-TSSEEEEC
T ss_pred CEEEEECCCHH---HHHHHHHHHHhcccCCCc-------CEEEEEeCCH----HH--HH-HHHHHHHHHhh-CCeEEEEe
Confidence 58999999994 66665554444 115432 6799999742 11 00 01122211000 00111224
Q ss_pred CCHHHHHhhcCCcEEEeccCCCC---------------CC-------------------CHHHHHHcccCCCCCCEEEec
Q 040403 417 ASLVEVVQQVKPDVLLGLSAVGG---------------LF-------------------SKEVLEAMRGSTSTRPAIFAM 462 (623)
Q Consensus 417 ~~L~e~V~~vkptvLIG~S~~~g---------------~F-------------------t~evv~~M~a~~~erPIIFaL 462 (623)
.++.++++ ++|++|=..++++ .+ =.++++.| .++| .-+|+-.
T Consensus 65 ~d~~~al~--~AD~Viitagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i-~~~~-~A~lin~ 140 (417)
T 1up7_A 65 DTFEGAVV--DAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTV-RKTS-NATIVNF 140 (417)
T ss_dssp SSHHHHHT--TCSEEEECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHH-HHTT-CCEEEEC
T ss_pred CCHHHHhC--CCCEEEEcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHH-HHHC-CEEEEEe
Confidence 67889999 9999997776653 22 26899999 8999 9999999
Q ss_pred CCCCCCCCCCHHHHhcccCCcEEEecC
Q 040403 463 SNPTNNAECTPEEAFSIVGDNIIFASG 489 (623)
Q Consensus 463 SNPt~~~E~tpeda~~wT~Grai~AtG 489 (623)
|||. -+..+-+++.+.-.-+|.+|
T Consensus 141 TNPv---di~t~a~~k~~p~~rviG~c 164 (417)
T 1up7_A 141 TNPS---GHITEFVRNYLEYEKFIGLC 164 (417)
T ss_dssp SSSH---HHHHHHHHHTTCCSSEEECC
T ss_pred CChH---HHHHHHHHHhCCCCCEEEeC
Confidence 9998 24445566776443577665
No 94
>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*
Probab=88.68 E-value=0.56 Score=46.24 Aligned_cols=79 Identities=28% Similarity=0.432 Sum_probs=53.7
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhh
Q 040403 319 AGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDA 398 (623)
Q Consensus 319 Agll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~ 398 (623)
.|++.+++-.|.+ +++ +++|+|+|.+|..+|..+... |. +++++|++ .+..
T Consensus 102 ~g~~~~l~~~~~~---l~~-~v~iiG~G~~g~~~a~~l~~~-----g~----------~v~v~~r~----------~~~~ 152 (263)
T 2d5c_A 102 PGFLEALKAGGIP---LKG-PALVLGAGGAGRAVAFALREA-----GL----------EVWVWNRT----------PQRA 152 (263)
T ss_dssp HHHHHHHHHTTCC---CCS-CEEEECCSHHHHHHHHHHHHT-----TC----------CEEEECSS----------HHHH
T ss_pred HHHHHHHHHhCCC---CCC-eEEEECCcHHHHHHHHHHHHC-----CC----------EEEEEECC----------HHHH
Confidence 4778888888877 999 999999999999998877653 62 58888874 1112
Q ss_pred HHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccC
Q 040403 399 KPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSA 436 (623)
Q Consensus 399 ~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~ 436 (623)
+.+++.. . .. ..++.++ + ++|++|-+..
T Consensus 153 ~~l~~~~-~-----~~-~~~~~~~-~--~~Divi~~tp 180 (263)
T 2d5c_A 153 LALAEEF-G-----LR-AVPLEKA-R--EARLLVNATR 180 (263)
T ss_dssp HHHHHHH-T-----CE-ECCGGGG-G--GCSEEEECSS
T ss_pred HHHHHHh-c-----cc-hhhHhhc-c--CCCEEEEccC
Confidence 3344211 1 11 3356666 5 7999997664
No 95
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}
Probab=88.54 E-value=0.73 Score=47.57 Aligned_cols=129 Identities=16% Similarity=0.186 Sum_probs=73.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhh-cccccCCC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEI-SRQGLWEG 416 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~-~~~~~~~~ 416 (623)
.||.|+|||+.|.++|.++... |+ -+++++|.+- ++ +......+.+..... ........
T Consensus 15 ~kI~ViGaG~vG~~iA~~la~~-----g~---------~~V~L~Di~~----~~--l~~~~~~l~~~~~~~~~~~~i~~t 74 (328)
T 2hjr_A 15 KKISIIGAGQIGSTIALLLGQK-----DL---------GDVYMFDIIE----GV--PQGKALDLNHCMALIGSPAKIFGE 74 (328)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----TC---------CEEEEECSST----TH--HHHHHHHHHHHHHHHTCCCCEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC---------CeEEEEECCH----HH--HHHHHHHHHhHhhccCCCCEEEEC
Confidence 5999999999999999887763 64 1399999851 11 111111111110000 00001122
Q ss_pred CCHHHHHhhcCCcEEEeccCCC---CC-----------CCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhccc--
Q 040403 417 ASLVEVVQQVKPDVLLGLSAVG---GL-----------FSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIV-- 480 (623)
Q Consensus 417 ~~L~e~V~~vkptvLIG~S~~~---g~-----------Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT-- 480 (623)
.++ ++++ +.|++|=+.+.| |. .-+++.+.+ .++++.-+|+=.|||.+. ..+-+.+.+
T Consensus 75 ~d~-~al~--~aD~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i-~~~~p~a~viv~tNP~~~---~t~~~~~~~~~ 147 (328)
T 2hjr_A 75 NNY-EYLQ--NSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENV-GKYCPNAFVICITNPLDA---MVYYFKEKSGI 147 (328)
T ss_dssp SCG-GGGT--TCSEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHH-HHHCTTCEEEECCSSHHH---HHHHHHHHHCC
T ss_pred CCH-HHHC--CCCEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHH-HHHCCCeEEEEecCchHH---HHHHHHHhcCC
Confidence 566 7777 899988554333 32 146678888 777887777667999842 234444333
Q ss_pred CCcEEEecCCCCC
Q 040403 481 GDNIIFASGSPFK 493 (623)
Q Consensus 481 ~Grai~AtGsPF~ 493 (623)
.-.-+|++|++.+
T Consensus 148 ~~~rviG~~t~Ld 160 (328)
T 2hjr_A 148 PANKVCGMSGVLD 160 (328)
T ss_dssp CGGGEEESCHHHH
T ss_pred ChhhEEEeCcHHH
Confidence 2334666665544
No 96
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}
Probab=88.49 E-value=3.1 Score=42.98 Aligned_cols=89 Identities=10% Similarity=0.208 Sum_probs=61.0
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLW 414 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~ 414 (623)
|.+.+|.|+|.|..|..+|+.+... |+ +++.+|+.. .. ..+... . .
T Consensus 144 l~g~~vgIIG~G~iG~~vA~~l~~~-----G~----------~V~~~d~~~---------~~---~~~~~~-g-----~- 189 (333)
T 2d0i_A 144 LYGKKVGILGMGAIGKAIARRLIPF-----GV----------KLYYWSRHR---------KV---NVEKEL-K-----A- 189 (333)
T ss_dssp STTCEEEEECCSHHHHHHHHHHGGG-----TC----------EEEEECSSC---------CH---HHHHHH-T-----E-
T ss_pred CCcCEEEEEccCHHHHHHHHHHHHC-----CC----------EEEEECCCc---------ch---hhhhhc-C-----c-
Confidence 9999999999999999999987653 63 588888741 11 122110 1 1
Q ss_pred CCCCHHHHHhhcCCcEEEeccC----CCCCCCHHHHHHcccCCCCCCEEEecCC
Q 040403 415 EGASLVEVVQQVKPDVLLGLSA----VGGLFSKEVLEAMRGSTSTRPAIFAMSN 464 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLIG~S~----~~g~Ft~evv~~M~a~~~erPIIFaLSN 464 (623)
...+|.++++ +.|+++=+-. ..+.++++.++.| .+. ++.-.|.
T Consensus 190 ~~~~l~e~l~--~aDiVil~vp~~~~t~~~i~~~~~~~m----k~g-ilin~sr 236 (333)
T 2d0i_A 190 RYMDIDELLE--KSDIVILALPLTRDTYHIINEERVKKL----EGK-YLVNIGR 236 (333)
T ss_dssp EECCHHHHHH--HCSEEEECCCCCTTTTTSBCHHHHHHT----BTC-EEEECSC
T ss_pred eecCHHHHHh--hCCEEEEcCCCChHHHHHhCHHHHhhC----CCC-EEEECCC
Confidence 1237889888 7898874321 2367888899999 455 7776664
No 97
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1
Probab=88.32 E-value=1.3 Score=45.34 Aligned_cols=104 Identities=18% Similarity=0.292 Sum_probs=61.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhh-cccccCCCC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEI-SRQGLWEGA 417 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~-~~~~~~~~~ 417 (623)
||.|+|||+.|.++|..|... |. ...++++|++- ++ +......+.+. ... ...... ..
T Consensus 2 kI~VIGaG~~G~~la~~l~~~-----g~--------~~~V~l~D~~~----~~--~~~~~~~l~~~-~~~~~~~~i~-~~ 60 (319)
T 1a5z_A 2 KIGIVGLGRVGSSTAFALLMK-----GF--------AREMVLIDVDK----KR--AEGDALDLIHG-TPFTRRANIY-AG 60 (319)
T ss_dssp EEEEECCSHHHHHHHHHHHHH-----TC--------CSEEEEECSSH----HH--HHHHHHHHHHH-GGGSCCCEEE-EC
T ss_pred EEEEECCCHHHHHHHHHHHhC-----CC--------CCeEEEEeCCh----HH--HHHHHHHHHhh-hhhcCCcEEE-eC
Confidence 799999999999999888764 74 14799999841 00 11111111100 000 000001 12
Q ss_pred CHHHHHhhcCCcEEEeccCCCCC--------------CCHHHHHHcccCCCCCCEEEecCCCCC
Q 040403 418 SLVEVVQQVKPDVLLGLSAVGGL--------------FSKEVLEAMRGSTSTRPAIFAMSNPTN 467 (623)
Q Consensus 418 ~L~e~V~~vkptvLIG~S~~~g~--------------Ft~evv~~M~a~~~erPIIFaLSNPt~ 467 (623)
+ .++++ +.|++|=+-+.+.. .-+++++.| .++++.-+|+-.|||..
T Consensus 61 d-~~~~~--~aDvViiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i-~~~~~~~~ii~~tNp~~ 120 (319)
T 1a5z_A 61 D-YADLK--GSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNV-SKYAPDSIVIVVTNPVD 120 (319)
T ss_dssp C-GGGGT--TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHH-HHHCTTCEEEECSSSHH
T ss_pred C-HHHhC--CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HhhCCCeEEEEeCCcHH
Confidence 3 35566 78988854443331 126888888 77677778888999984
No 98
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}
Probab=88.30 E-value=0.7 Score=45.06 Aligned_cols=98 Identities=17% Similarity=0.164 Sum_probs=61.0
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLW 414 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~ 414 (623)
+...||.|+|+|..|..+|..+... |. +.++++|++ .+....+++. .. ..
T Consensus 8 ~~~m~i~iiG~G~mG~~~a~~l~~~-----g~---------~~v~~~~~~----------~~~~~~~~~~-~g-----~~ 57 (266)
T 3d1l_A 8 IEDTPIVLIGAGNLATNLAKALYRK-----GF---------RIVQVYSRT----------EESARELAQK-VE-----AE 57 (266)
T ss_dssp GGGCCEEEECCSHHHHHHHHHHHHH-----TC---------CEEEEECSS----------HHHHHHHHHH-TT-----CE
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHC-----CC---------eEEEEEeCC----------HHHHHHHHHH-cC-----Cc
Confidence 5567999999999999999988764 73 237788863 1111223211 01 11
Q ss_pred CCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCC-CCCCEEEecCCCCC
Q 040403 415 EGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGST-STRPAIFAMSNPTN 467 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~-~erPIIFaLSNPt~ 467 (623)
...++.|+++ ++|++|=+. .+.. .+++++.+ ... .+..+|.-+||-.+
T Consensus 58 ~~~~~~~~~~--~~Dvvi~av-~~~~-~~~v~~~l-~~~~~~~~ivv~~s~~~~ 106 (266)
T 3d1l_A 58 YTTDLAEVNP--YAKLYIVSL-KDSA-FAELLQGI-VEGKREEALMVHTAGSIP 106 (266)
T ss_dssp EESCGGGSCS--CCSEEEECC-CHHH-HHHHHHHH-HTTCCTTCEEEECCTTSC
T ss_pred eeCCHHHHhc--CCCEEEEec-CHHH-HHHHHHHH-HhhcCCCcEEEECCCCCc
Confidence 2345667776 788888443 3333 37888877 443 36678888888543
No 99
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}
Probab=88.24 E-value=4.4 Score=42.45 Aligned_cols=191 Identities=16% Similarity=0.216 Sum_probs=109.9
Q ss_pred cCCccccCc---chhHHHHHHHHHHHHHHh---------------------CCCCCCCCCceEEEeCcchHHHHHHHHHH
Q 040403 302 KYRMFNDDV---QGTAGVAVAGLLGAVRAQ---------------------GRSMIDFPKQKIVVAGAGSAGLGVLNAAR 357 (623)
Q Consensus 302 ~~~~FNDDi---QGTaaV~lAgll~A~r~~---------------------g~~~~~l~d~riv~~GAGsAg~GIA~ll~ 357 (623)
.|++.|--- +.+|=-+++-+|+..|-. |.. |.+.+|.|+|.|..|..+|+.+.
T Consensus 117 gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~~~~~g~~---l~gktvGIIGlG~IG~~vA~~l~ 193 (345)
T 4g2n_A 117 GIKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMG---LTGRRLGIFGMGRIGRAIATRAR 193 (345)
T ss_dssp TCEEECCCSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCTTTTCBCC---CTTCEEEEESCSHHHHHHHHHHH
T ss_pred CEEEEECCcccchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccccc---cCCCEEEEEEeChhHHHHHHHHH
Confidence 455555432 234556788888877642 344 89999999999999999999987
Q ss_pred HHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccC-
Q 040403 358 KTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSA- 436 (623)
Q Consensus 358 ~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~- 436 (623)
.. |+ +++.+|+... + ...+. . .....+|.|+++ +.|+++=.--
T Consensus 194 ~~-----G~----------~V~~~dr~~~--------~---~~~~~---g-----~~~~~~l~ell~--~sDvV~l~~Pl 237 (345)
T 4g2n_A 194 GF-----GL----------AIHYHNRTRL--------S---HALEE---G-----AIYHDTLDSLLG--ASDIFLIAAPG 237 (345)
T ss_dssp TT-----TC----------EEEEECSSCC--------C---HHHHT---T-----CEECSSHHHHHH--TCSEEEECSCC
T ss_pred HC-----CC----------EEEEECCCCc--------c---hhhhc---C-----CeEeCCHHHHHh--hCCEEEEecCC
Confidence 54 74 5778887521 1 11111 1 112347999999 8999885421
Q ss_pred ---CCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccCCcEEEecCCC-CCccccCCCeeccCCCCcccc
Q 040403 437 ---VGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGSP-FKDVDLGNGHIGHCNQGNNMY 512 (623)
Q Consensus 437 ---~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~Grai~AtGsP-F~pv~~~~G~~~~p~Q~NN~y 512 (623)
..+.|+++.++.| .+..++.=.|.-..--|-.-.+|++ +|+.- +.|-. |.+-. + ....--+..|+.
T Consensus 238 t~~T~~li~~~~l~~m----k~gailIN~aRG~~vde~aL~~aL~--~g~i~-gA~LDVf~~EP-~--~~~pL~~~~nvi 307 (345)
T 4g2n_A 238 RPELKGFLDHDRIAKI----PEGAVVINISRGDLINDDALIEALR--SKHLF-AAGLDVFANEP-A--IDPRYRSLDNIF 307 (345)
T ss_dssp CGGGTTCBCHHHHHHS----CTTEEEEECSCGGGBCHHHHHHHHH--HTSEE-EEEESCCTTTT-S--CCTTGGGCTTEE
T ss_pred CHHHHHHhCHHHHhhC----CCCcEEEECCCCchhCHHHHHHHHH--hCCce-EEEecCCCCCC-C--CCchHHhCCCEE
Confidence 2388999999999 6777888777643222222233433 35543 32221 11000 0 001112345778
Q ss_pred chhHHHHHHHHcCCcccCHHHHHHHHHHHHcccC
Q 040403 513 LFPGVGLGTLLSGSRIISDGMLQAAAECLAEYMT 546 (623)
Q Consensus 513 iFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v~ 546 (623)
+-|=+|-... .--..|...+++-|.....
T Consensus 308 lTPHia~~t~-----e~~~~~~~~~~~ni~~~l~ 336 (345)
T 4g2n_A 308 LTPHIGSATH-----ETRDAMGWLLIQGIEALNQ 336 (345)
T ss_dssp ECCSCTTCBH-----HHHHHHHHHHHHHHHHHHT
T ss_pred EcCccCcCCH-----HHHHHHHHHHHHHHHHHHc
Confidence 8886652111 1123455555555555543
No 100
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=88.15 E-value=9.3 Score=41.14 Aligned_cols=215 Identities=16% Similarity=0.152 Sum_probs=126.3
Q ss_pred CCce-eeecccCCCchHHHHHHHHhccCCccccCcc---hhHHHHHHHHHHHHHHh------------------CCCCCC
Q 040403 277 WPNV-IVQFEDFQSKWAFKLLQRYRYKYRMFNDDVQ---GTAGVAVAGLLGAVRAQ------------------GRSMID 334 (623)
Q Consensus 277 ~P~~-lIqfEDf~~~nAf~lL~ryr~~~~~FNDDiQ---GTaaV~lAgll~A~r~~------------------g~~~~~ 334 (623)
.|+. .|+.-=.+..| ..+-.--+.-|++||---- .+|=-++|.+|+..|-. +..
T Consensus 78 ~p~Lk~I~~~~~G~d~-IDl~~a~~~GI~V~n~p~~n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~~~~~~e--- 153 (416)
T 3k5p_A 78 ANRLIAVGCFSVGTNQ-VELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAIGSRE--- 153 (416)
T ss_dssp CTTCCEEEECSSCCTT-BCHHHHHHTTCCEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTCCC---
T ss_pred CCCcEEEEECccccCc-cCHHHHHhcCcEEEeCCCcccHHHHHHHHHHHHHHhcccHHHHHhhhcccccccCCCCcc---
Confidence 4553 44433334333 3332222345899987533 34555888888887631 334
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLW 414 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~ 414 (623)
|.+.++.|+|.|..|..+|+.+... |+ +++.+|+..- .... . ..
T Consensus 154 l~gktvGIIGlG~IG~~vA~~l~~~-----G~----------~V~~yd~~~~-------~~~~---------~-----~~ 197 (416)
T 3k5p_A 154 VRGKTLGIVGYGNIGSQVGNLAESL-----GM----------TVRYYDTSDK-------LQYG---------N-----VK 197 (416)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHT-----TC----------EEEEECTTCC-------CCBT---------T-----BE
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHHC-----CC----------EEEEECCcch-------hccc---------C-----cE
Confidence 8999999999999999999988764 74 5788887411 1100 0 11
Q ss_pred CCCCHHHHHhhcCCcEEEecc----CCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccCCcEEEecCC
Q 040403 415 EGASLVEVVQQVKPDVLLGLS----AVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGS 490 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLIG~S----~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~Grai~AtGs 490 (623)
...+|.|+++ +.|+++=.- ...+.|+++.++.| .+..++.=.|.=..--|---.+|++ +|+. .+.|.
T Consensus 198 ~~~sl~ell~--~aDvV~lhvPlt~~T~~li~~~~l~~m----k~gailIN~aRG~vvd~~aL~~aL~--~g~i-~gAal 268 (416)
T 3k5p_A 198 PAASLDELLK--TSDVVSLHVPSSKSTSKLITEAKLRKM----KKGAFLINNARGSDVDLEALAKVLQ--EGHL-AGAAI 268 (416)
T ss_dssp ECSSHHHHHH--HCSEEEECCCC-----CCBCHHHHHHS----CTTEEEEECSCTTSBCHHHHHHHHH--TTSE-EEEEE
T ss_pred ecCCHHHHHh--hCCEEEEeCCCCHHHhhhcCHHHHhhC----CCCcEEEECCCChhhhHHHHHHHHH--cCCc-cEEEe
Confidence 2357999998 789888432 12388999999999 6788888888755323333334444 4664 33333
Q ss_pred C-CCccccCCCeec--cCCCCccccchhHHHHHHHHcCCcccCHHHHHHHHHHHHccc
Q 040403 491 P-FKDVDLGNGHIG--HCNQGNNMYLFPGVGLGTLLSGSRIISDGMLQAAAECLAEYM 545 (623)
Q Consensus 491 P-F~pv~~~~G~~~--~p~Q~NN~yiFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v 545 (623)
. |++-..+.+..+ .--+..|+.+-|=+|-...-+ -+.|...+++.|.+..
T Consensus 269 DVf~~EP~~~~~~~~~pL~~~~nvilTPHig~~T~ea-----~~~~~~~~~~nl~~~l 321 (416)
T 3k5p_A 269 DVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEEA-----QERIGTEVTRKLVEYS 321 (416)
T ss_dssp CCCSSCCSSTTSCCCCTTTTCTTEEECCSCTTCCHHH-----HHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcccccchhHhcCCCEEECCCCCCCCHHH-----HHHHHHHHHHHHHHHH
Confidence 3 322211111111 113567899999876332222 2455666677776665
No 101
>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2
Probab=88.06 E-value=0.095 Score=57.31 Aligned_cols=132 Identities=18% Similarity=0.158 Sum_probs=77.3
Q ss_pred CceEEEeCcchH-HHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCC
Q 040403 337 KQKIVVAGAGSA-GLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWE 415 (623)
Q Consensus 337 d~riv~~GAGsA-g~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~ 415 (623)
..||.|+|||+. +.++|..|+.. .. ++.. ..++|+|.+-=..+ .+.+....+... ... ++....
T Consensus 28 ~~KIaVIGaGsv~~~ala~~L~~~--~~-~l~~-------~eV~L~Di~~e~~~---~~~~~~~~~l~~-~~~-~~~I~~ 92 (472)
T 1u8x_X 28 SFSIVIAGGGSTFTPGIVLMLLDH--LE-EFPI-------RKLKLYDNDKERQD---RIAGACDVFIRE-KAP-DIEFAA 92 (472)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHT--TT-TSCE-------EEEEEECSCHHHHH---HHHHHHHHHHHH-HCT-TSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHhC--CC-CCCC-------CEEEEEeCCHHHHH---HHHHHHHHHhcc-CCC-CCEEEE
Confidence 359999999996 55566665541 01 4422 56999998521100 011111122100 000 000112
Q ss_pred CCCHHHHHhhcCCcEEEeccCCCCC----------------------------------CCHHHHHHcccCCCCCCEEEe
Q 040403 416 GASLVEVVQQVKPDVLLGLSAVGGL----------------------------------FSKEVLEAMRGSTSTRPAIFA 461 (623)
Q Consensus 416 ~~~L~e~V~~vkptvLIG~S~~~g~----------------------------------Ft~evv~~M~a~~~erPIIFa 461 (623)
..++.++++ +.|++|=+.+.++. .=+++++.| .++|+.-+|+-
T Consensus 93 t~D~~eal~--~AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i-~~~~P~A~ii~ 169 (472)
T 1u8x_X 93 TTDPEEAFT--DVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYM-EKYSPDAWMLN 169 (472)
T ss_dssp ESCHHHHHS--SCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHH-HHHCTTCEEEE
T ss_pred ECCHHHHHc--CCCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHH-HHHCCCeEEEE
Confidence 468999999 89999865544321 136888999 89999999999
Q ss_pred cCCCCCCCCCCHHHHhcccCCcEEEecC
Q 040403 462 MSNPTNNAECTPEEAFSIVGDNIIFASG 489 (623)
Q Consensus 462 LSNPt~~~E~tpeda~~wT~Grai~AtG 489 (623)
.|||. -+..+-+++.+.-.-+|.+|
T Consensus 170 ~TNPv---di~T~~~~k~~p~~rViG~c 194 (472)
T 1u8x_X 170 YSNPA---AIVAEATRRLRPNSKILNIC 194 (472)
T ss_dssp CCSCH---HHHHHHHHHHSTTCCEEECC
T ss_pred eCCcH---HHHHHHHHHhCCCCCEEEeC
Confidence 99998 24445555655333566665
No 102
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=88.03 E-value=6.8 Score=41.76 Aligned_cols=142 Identities=13% Similarity=0.121 Sum_probs=91.5
Q ss_pred CCce-eeecccCCCchHHHHHHHHhccCCccccCcc---hhHHHHHHHHHHHHHH------------------hCCCCCC
Q 040403 277 WPNV-IVQFEDFQSKWAFKLLQRYRYKYRMFNDDVQ---GTAGVAVAGLLGAVRA------------------QGRSMID 334 (623)
Q Consensus 277 ~P~~-lIqfEDf~~~nAf~lL~ryr~~~~~FNDDiQ---GTaaV~lAgll~A~r~------------------~g~~~~~ 334 (623)
.|+. .|+.-=.+..| ..+-.--+.-+++||---- .+|=-++|.+|+..|- .|..
T Consensus 67 ~~~Lk~I~~~~~G~d~-iD~~~a~~~GI~V~n~p~~n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~~~~~~~e--- 142 (404)
T 1sc6_A 67 AEKLVAIGAFAIGTNQ-VDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFE--- 142 (404)
T ss_dssp CSSCCEEEECSSCCTT-BCHHHHHHTTCCEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CCC---
T ss_pred CCCCcEEEECCcccCc-cCHHHHHhCCCEEEecCcccHHHHHHHHHHHHHHHHhChHHHHHHHHcCCccccCCCccc---
Confidence 4653 45444344433 2222222335888886543 3455589999988873 2344
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLW 414 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~ 414 (623)
|.+.++.|+|-|..|..+|+.+... |+ +++.+|+..- ..+. . ..
T Consensus 143 l~gktlGiIGlG~IG~~vA~~l~~~-----G~----------~V~~~d~~~~-----~~~~-----------~-----~~ 186 (404)
T 1sc6_A 143 ARGKKLGIIGYGHIGTQLGILAESL-----GM----------YVYFYDIENK-----LPLG-----------N-----AT 186 (404)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHT-----TC----------EEEEECSSCC-----CCCT-----------T-----CE
T ss_pred cCCCEEEEEeECHHHHHHHHHHHHC-----CC----------EEEEEcCCch-----hccC-----------C-----ce
Confidence 8999999999999999999988764 74 5788887421 0000 0 11
Q ss_pred CCCCHHHHHhhcCCcEEEecc----CCCCCCCHHHHHHcccCCCCCCEEEecCC
Q 040403 415 EGASLVEVVQQVKPDVLLGLS----AVGGLFSKEVLEAMRGSTSTRPAIFAMSN 464 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLIG~S----~~~g~Ft~evv~~M~a~~~erPIIFaLSN 464 (623)
...+|.|+++ +.|+++=.- ...+.|+++.+..| .+.-++.=.|.
T Consensus 187 ~~~~l~ell~--~aDvV~l~~P~t~~t~~li~~~~l~~m----k~ga~lIN~aR 234 (404)
T 1sc6_A 187 QVQHLSDLLN--MSDVVSLHVPENPSTKNMMGAKEISLM----KPGSLLINASR 234 (404)
T ss_dssp ECSCHHHHHH--HCSEEEECCCSSTTTTTCBCHHHHHHS----CTTEEEEECSC
T ss_pred ecCCHHHHHh--cCCEEEEccCCChHHHHHhhHHHHhhc----CCCeEEEECCC
Confidence 2346888888 688887531 23478889999999 56678877775
No 103
>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}
Probab=87.98 E-value=3.4 Score=43.70 Aligned_cols=132 Identities=20% Similarity=0.177 Sum_probs=82.2
Q ss_pred hhHHHHHHHHHHHHHHh---------CC---------CCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhh
Q 040403 312 GTAGVAVAGLLGAVRAQ---------GR---------SMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDS 373 (623)
Q Consensus 312 GTaaV~lAgll~A~r~~---------g~---------~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~ee 373 (623)
.+|=-+++-+|+..|-. |. ....|.+.+|.|+|.|..|-.+|+.+... |+
T Consensus 133 ~vAE~~l~l~L~~~R~~~~~~~~~r~g~~~w~~~~~~~~~~l~gktvGIIGlG~IG~~vA~~l~~f-----G~------- 200 (365)
T 4hy3_A 133 PVAEIGLGFALALARGIVDADIAFQEGTELWGGEGNASARLIAGSEIGIVGFGDLGKALRRVLSGF-----RA------- 200 (365)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHHHTCCCCSSSSTTSCCCSSSSEEEEECCSHHHHHHHHHHTTS-----CC-------
T ss_pred HHHHHHHHHHHHHHhchhHHHHHHHcCCccccccccccccccCCCEEEEecCCcccHHHHHhhhhC-----CC-------
Confidence 34555788888777621 11 11248899999999999999999987653 74
Q ss_pred ccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEec----cCCCCCCCHHHHHHc
Q 040403 374 ARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGL----SAVGGLFSKEVLEAM 449 (623)
Q Consensus 374 A~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~----S~~~g~Ft~evv~~M 449 (623)
+++.+|+.. . ...+.. . .-...+|.|+++ +.|+++=. ....+.|+++.++.|
T Consensus 201 ---~V~~~d~~~---------~---~~~~~~--~-----g~~~~~l~ell~--~aDvV~l~~Plt~~T~~li~~~~l~~m 256 (365)
T 4hy3_A 201 ---RIRVFDPWL---------P---RSMLEE--N-----GVEPASLEDVLT--KSDFIFVVAAVTSENKRFLGAEAFSSM 256 (365)
T ss_dssp ---EEEEECSSS---------C---HHHHHH--T-----TCEECCHHHHHH--SCSEEEECSCSSCC---CCCHHHHHTS
T ss_pred ---EEEEECCCC---------C---HHHHhh--c-----CeeeCCHHHHHh--cCCEEEEcCcCCHHHHhhcCHHHHhcC
Confidence 577777641 1 111211 1 112357999999 89999843 234578999999999
Q ss_pred ccCCCCCCEEEecCCCCCCCCCCHHHHhcccCCcEE
Q 040403 450 RGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNII 485 (623)
Q Consensus 450 ~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~Grai 485 (623)
.+.-++.=.|.-..--|---.+|++ +|+.-
T Consensus 257 ----k~gailIN~aRG~~vde~aL~~aL~--~g~i~ 286 (365)
T 4hy3_A 257 ----RRGAAFILLSRADVVDFDALMAAVS--SGHIV 286 (365)
T ss_dssp ----CTTCEEEECSCGGGSCHHHHHHHHH--TTSSE
T ss_pred ----CCCcEEEECcCCchhCHHHHHHHHH--cCCce
Confidence 6777888777643222322333443 35543
No 104
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}
Probab=87.98 E-value=1.3 Score=45.45 Aligned_cols=104 Identities=16% Similarity=0.281 Sum_probs=62.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhc-ccccCCCC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEIS-RQGLWEGA 417 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~-~~~~~~~~ 417 (623)
||.|+|||+.|.++|-.++.. |+ ..++|+|.+ .++ +......+.+...... .+......
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~-----~l---------~el~L~Di~----~~~--~~g~~~dl~~~~~~~~~~~~i~~t~ 60 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMR-----GY---------DDLLLIART----PGK--PQGEALDLAHAAAELGVDIRISGSN 60 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHH-----TC---------SCEEEECSS----TTH--HHHHHHHHHHHHHHHTCCCCEEEES
T ss_pred CEEEECcCHHHHHHHHHHHhC-----CC---------CEEEEEcCC----hhh--HHHHHHHHHHhhhhcCCCeEEEECC
Confidence 689999999999999777653 64 259999985 111 1111111211000000 00011124
Q ss_pred CHHHHHhhcCCcEEEeccCCCC---C-----------CCHHHHHHcccCCCCCCEEEecCCCC
Q 040403 418 SLVEVVQQVKPDVLLGLSAVGG---L-----------FSKEVLEAMRGSTSTRPAIFAMSNPT 466 (623)
Q Consensus 418 ~L~e~V~~vkptvLIG~S~~~g---~-----------Ft~evv~~M~a~~~erPIIFaLSNPt 466 (623)
+. ++++ +.|++|=+.+.+. - .-+++++.| .++++.-+|+=.|||.
T Consensus 61 d~-~a~~--~aD~Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i-~~~~p~a~iiv~tNPv 119 (308)
T 2d4a_B 61 SY-EDMR--GSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKI-KAYAKDAIVVITTNPV 119 (308)
T ss_dssp CG-GGGT--TCSEEEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHH-HHHCTTCEEEECCSSH
T ss_pred CH-HHhC--CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHH-HHHCCCeEEEEeCCch
Confidence 55 6777 8999986655443 1 136788888 7778888777789998
No 105
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=87.65 E-value=1.1 Score=44.64 Aligned_cols=93 Identities=15% Similarity=0.168 Sum_probs=54.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGA 417 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~ 417 (623)
.||.|+|+|..|.++|..+... |. +++++|++ .+....+++. . .....
T Consensus 4 ~~I~iiG~G~mG~~~a~~l~~~-----G~----------~V~~~d~~----------~~~~~~~~~~--g-----~~~~~ 51 (302)
T 2h78_A 4 KQIAFIGLGHMGAPMATNLLKA-----GY----------LLNVFDLV----------QSAVDGLVAA--G-----ASAAR 51 (302)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT-----TC----------EEEEECSS----------HHHHHHHHHT--T-----CEECS
T ss_pred CEEEEEeecHHHHHHHHHHHhC-----CC----------eEEEEcCC----------HHHHHHHHHC--C-----CeEcC
Confidence 5899999999999999998874 72 57788874 1111222211 1 12345
Q ss_pred CHHHHHhhcCCcEEEeccCCCCCCCHHHHH---HcccCCCCCCEEEecCCC
Q 040403 418 SLVEVVQQVKPDVLLGLSAVGGLFSKEVLE---AMRGSTSTRPAIFAMSNP 465 (623)
Q Consensus 418 ~L~e~V~~vkptvLIG~S~~~g~Ft~evv~---~M~a~~~erPIIFaLSNP 465 (623)
++.|+++ ++|++|=+- ....-.++++. .+.....+..+|+-+|+-
T Consensus 52 ~~~~~~~--~aDvvi~~v-p~~~~~~~v~~~~~~~~~~l~~~~~vi~~st~ 99 (302)
T 2h78_A 52 SARDAVQ--GADVVISML-PASQHVEGLYLDDDGLLAHIAPGTLVLECSTI 99 (302)
T ss_dssp SHHHHHT--TCSEEEECC-SCHHHHHHHHHSSSCGGGSSCSSCEEEECSCC
T ss_pred CHHHHHh--CCCeEEEEC-CCHHHHHHHHcCchhHHhcCCCCcEEEECCCC
Confidence 6777777 677766322 11223355555 331233455677777653
No 106
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*
Probab=87.65 E-value=3.2 Score=43.07 Aligned_cols=119 Identities=18% Similarity=0.244 Sum_probs=78.5
Q ss_pred cCCccccCcc---hhHHHHHHHHHHHHHH-------------------hCCCCCCCCCceEEEeCcchHHHHHHHHHHHH
Q 040403 302 KYRMFNDDVQ---GTAGVAVAGLLGAVRA-------------------QGRSMIDFPKQKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 302 ~~~~FNDDiQ---GTaaV~lAgll~A~r~-------------------~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~ 359 (623)
.+.+.|---- .+|=-+++-+|+..|- .|.. |.+.+|.|+|.|..|..+|+.+...
T Consensus 110 gI~v~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~---l~g~~vgIIG~G~iG~~vA~~l~~~ 186 (333)
T 3ba1_A 110 GVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWKFGDFKLTTK---FSGKRVGIIGLGRIGLAVAERAEAF 186 (333)
T ss_dssp TCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTGGGGCCCCCCCC---CTTCCEEEECCSHHHHHHHHHHHTT
T ss_pred CcEEEECCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccc---cCCCEEEEECCCHHHHHHHHHHHHC
Confidence 3555554322 3344467777777653 1334 8999999999999999999988753
Q ss_pred HHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEecc----
Q 040403 360 MARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLS---- 435 (623)
Q Consensus 360 m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S---- 435 (623)
|+ +++.+|+..- . .. . .....+|.|+++ +.|+++=.-
T Consensus 187 -----G~----------~V~~~dr~~~----~--~~-----------g-----~~~~~~l~ell~--~aDvVil~vP~~~ 227 (333)
T 3ba1_A 187 -----DC----------PISYFSRSKK----P--NT-----------N-----YTYYGSVVELAS--NSDILVVACPLTP 227 (333)
T ss_dssp -----TC----------CEEEECSSCC----T--TC-----------C-----SEEESCHHHHHH--TCSEEEECSCCCG
T ss_pred -----CC----------EEEEECCCch----h--cc-----------C-----ceecCCHHHHHh--cCCEEEEecCCCh
Confidence 74 4778887421 0 00 0 011246889888 789887532
Q ss_pred CCCCCCCHHHHHHcccCCCCCCEEEecCCCC
Q 040403 436 AVGGLFSKEVLEAMRGSTSTRPAIFAMSNPT 466 (623)
Q Consensus 436 ~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt 466 (623)
...+.++++.++.| .+..+|.-.|.-.
T Consensus 228 ~t~~li~~~~l~~m----k~gailIn~srG~ 254 (333)
T 3ba1_A 228 ETTHIINREVIDAL----GPKGVLINIGRGP 254 (333)
T ss_dssp GGTTCBCHHHHHHH----CTTCEEEECSCGG
T ss_pred HHHHHhhHHHHhcC----CCCCEEEECCCCc
Confidence 12478889999999 5667777666643
No 107
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Probab=87.59 E-value=0.64 Score=47.91 Aligned_cols=126 Identities=15% Similarity=0.124 Sum_probs=72.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhh-cccccCCC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEI-SRQGLWEG 416 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~-~~~~~~~~ 416 (623)
.||.|+|||+.|.++|.++... |+ -+++|+|.+ .++ +......+.+..... ........
T Consensus 5 ~kI~VIGaG~vG~~ia~~la~~-----g~---------~~v~L~Di~----~~~--l~~~~~~l~~~~~~~~~~~~i~~t 64 (322)
T 1t2d_A 5 AKIVLVGSGMIGGVMATLIVQK-----NL---------GDVVLFDIV----KNM--PHGKALDTSHTNVMAYSNCKVSGS 64 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----TC---------CEEEEECSS----SSH--HHHHHHHHHTHHHHHTCCCCEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC---------CeEEEEeCC----HHH--HHHHHHHHHhhhhhcCCCcEEEEC
Confidence 5899999999999999888774 64 139999975 111 111111111100000 00001122
Q ss_pred CCHHHHHhhcCCcEEEeccCCC---CC----------------CCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHh
Q 040403 417 ASLVEVVQQVKPDVLLGLSAVG---GL----------------FSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAF 477 (623)
Q Consensus 417 ~~L~e~V~~vkptvLIG~S~~~---g~----------------Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~ 477 (623)
.++ ++++ +.|++|=+.+.| |. .-+++.+.| .++++.-+|+=.|||.... .+-+.
T Consensus 65 ~d~-~al~--~aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i-~~~~p~a~iiv~tNP~~~~---t~~~~ 137 (322)
T 1t2d_A 65 NTY-DDLA--GADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHI-KKNCPNAFIIVVTNPVDVM---VQLLH 137 (322)
T ss_dssp CCG-GGGT--TCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHH-HHHCTTSEEEECSSSHHHH---HHHHH
T ss_pred CCH-HHhC--CCCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHH-HHHCCCeEEEEecCChHHH---HHHHH
Confidence 567 7787 899998654333 31 346788888 7778888877679998432 33344
Q ss_pred ccc--CCcEEEecCC
Q 040403 478 SIV--GDNIIFASGS 490 (623)
Q Consensus 478 ~wT--~Grai~AtGs 490 (623)
+.+ .-.-+|++|.
T Consensus 138 ~~~g~~~~rviG~gt 152 (322)
T 1t2d_A 138 QHSGVPKNKIIGLGG 152 (322)
T ss_dssp HHHCCCGGGEEECCH
T ss_pred HhcCCChHHEEeccC
Confidence 433 2234555553
No 108
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A
Probab=87.32 E-value=0.37 Score=49.13 Aligned_cols=114 Identities=17% Similarity=0.178 Sum_probs=67.7
Q ss_pred eEEEeC-cchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEcc--CCcccCCCCCCChhhHHhHHHhhhhcccccCC
Q 040403 339 KIVVAG-AGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDA--KGLITEDRENIDPDAKPFARKVNEISRQGLWE 415 (623)
Q Consensus 339 riv~~G-AGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~--~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~ 415 (623)
||+|.| +|..|..++..|+.. |+ ...++|+|. +- ++ +......+.+...-..++...
T Consensus 2 KI~IiGAaG~vG~~l~~~L~~~-----~~--------~~el~L~Di~~~~----~~--~~~~~~dl~~~~~~~~~~~v~- 61 (303)
T 1o6z_A 2 KVSVVGAAGTVGAAAGYNIALR-----DI--------ADEVVFVDIPDKE----DD--TVGQAADTNHGIAYDSNTRVR- 61 (303)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT-----TC--------CSEEEEECCGGGH----HH--HHHHHHHHHHHHTTTCCCEEE-
T ss_pred EEEEECCCChHHHHHHHHHHhC-----CC--------CCEEEEEcCCCCh----hh--HHHHHHHHHHHHhhCCCcEEE-
Confidence 899999 999999988877652 53 246999997 31 00 100011111100000000000
Q ss_pred CCCHHHHHhhcCCcEEEeccCCC---CC-----------CCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcc
Q 040403 416 GASLVEVVQQVKPDVLLGLSAVG---GL-----------FSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSI 479 (623)
Q Consensus 416 ~~~L~e~V~~vkptvLIG~S~~~---g~-----------Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~w 479 (623)
..+ .++++ +.|++|=+.+.+ |. .++++++.| .+++.+.+|+--|||. ....+-+++.
T Consensus 62 ~~~-~~a~~--~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i-~~~~p~~~viv~SNPv---~~~~~~~~~~ 132 (303)
T 1o6z_A 62 QGG-YEDTA--GSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSL-DEHNDDYISLTTSNPV---DLLNRHLYEA 132 (303)
T ss_dssp ECC-GGGGT--TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHH-HTTCSCCEEEECCSSH---HHHHHHHHHH
T ss_pred eCC-HHHhC--CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHCCCcEEEEeCChH---HHHHHHHHHH
Confidence 022 56677 899998666544 32 467888999 8889999999999997 3344445454
No 109
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Probab=87.27 E-value=1 Score=46.18 Aligned_cols=106 Identities=16% Similarity=0.160 Sum_probs=62.5
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhc-ccccCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEIS-RQGLWE 415 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~-~~~~~~ 415 (623)
-.||.|+|||..|.++|..+... |+ ...|+++|.+-- + +......+.+...... ++ .-
T Consensus 6 ~~kI~IIGaG~vG~sla~~l~~~-----~~--------~~ev~l~Di~~~----~--~~~~~~dl~~~~~~~~~~~--~i 64 (316)
T 1ldn_A 6 GARVVVIGAGFVGASYVFALMNQ-----GI--------ADEIVLIDANES----K--AIGDAMDFNHGKVFAPKPV--DI 64 (316)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHH-----TC--------CSEEEEECSSHH----H--HHHHHHHHHHHTTSSSSCC--EE
T ss_pred CCEEEEECcCHHHHHHHHHHHhC-----CC--------CCEEEEEeCCcc----h--HHHHHhhHHHHhhhcCCCe--EE
Confidence 36999999999999999776553 64 257999998510 0 0001111211000000 00 00
Q ss_pred CCCHHHHHhhcCCcEEEeccCCCC--------------CCCHHHHHHcccCCCCCCEEEecCCCC
Q 040403 416 GASLVEVVQQVKPDVLLGLSAVGG--------------LFSKEVLEAMRGSTSTRPAIFAMSNPT 466 (623)
Q Consensus 416 ~~~L~e~V~~vkptvLIG~S~~~g--------------~Ft~evv~~M~a~~~erPIIFaLSNPt 466 (623)
..+..++++ +.|++|=+.+.+. ...+++++.| .++++.-++|=.|||.
T Consensus 65 ~~~~~~al~--~aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i-~~~~p~a~~iv~tNPv 126 (316)
T 1ldn_A 65 WHGDYDDCR--DADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESV-MASGFQGLFLVATNPV 126 (316)
T ss_dssp EECCGGGTT--TCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHH-HHHTCCSEEEECSSSH
T ss_pred EcCcHHHhC--CCCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHH-HHHCCCCEEEEeCCch
Confidence 112346676 8999885544432 1235677888 7778888888889998
No 110
>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2
Probab=87.15 E-value=0.24 Score=54.29 Aligned_cols=130 Identities=19% Similarity=0.153 Sum_probs=75.7
Q ss_pred CceEEEeCcchHH--HHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccC
Q 040403 337 KQKIVVAGAGSAG--LGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLW 414 (623)
Q Consensus 337 d~riv~~GAGsAg--~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~ 414 (623)
..||.|+|||+.| .++|..|+.. . ++. -..++|+|.+-=..+. +......+... .. .+....
T Consensus 3 ~~KIaVIGAGsVg~g~ala~~La~~---~-~l~-------~~eV~L~Di~~e~l~~---~~~~~~~~l~~-~~-~~~~I~ 66 (480)
T 1obb_A 3 SVKIGIIGAGSAVFSLRLVSDLCKT---P-GLS-------GSTVTLMDIDEERLDA---ILTIAKKYVEE-VG-ADLKFE 66 (480)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTC---G-GGT-------TCEEEEECSCHHHHHH---HHHHHHHHHHH-TT-CCCEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHHhc---C-cCC-------CCEEEEEeCCHHHHHH---HHHHHHHHhcc-CC-CCcEEE
Confidence 3589999999965 4446666531 1 221 2679999985211000 01111111100 00 000012
Q ss_pred CCCCHHHHHhhcCCcEEEeccCC---------------CCCCC-------------------------HHHHHHcccCCC
Q 040403 415 EGASLVEVVQQVKPDVLLGLSAV---------------GGLFS-------------------------KEVLEAMRGSTS 454 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLIG~S~~---------------~g~Ft-------------------------~evv~~M~a~~~ 454 (623)
...++.++++ ++|++|=+.++ .|.|. +++++.| .++|
T Consensus 67 ~ttD~~eal~--dAD~VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i-~~~~ 143 (480)
T 1obb_A 67 KTMNLDDVII--DADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKI-EKLS 143 (480)
T ss_dssp EESCHHHHHT--TCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHH-HHHC
T ss_pred EECCHHHHhC--CCCEEEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHH-HHHC
Confidence 2467889998 89998855432 13333 6889999 8999
Q ss_pred CCCEEEecCCCCCCCCCCHHHHhcccCCcEEEecC
Q 040403 455 TRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASG 489 (623)
Q Consensus 455 erPIIFaLSNPt~~~E~tpeda~~wT~Grai~AtG 489 (623)
+.-+|+-.|||. -+..+-+.++..- -+|.+|
T Consensus 144 P~A~ii~~TNPv---di~t~~~~k~p~~-rviG~c 174 (480)
T 1obb_A 144 PKAWYLQAANPI---FEGTTLVTRTVPI-KAVGFC 174 (480)
T ss_dssp TTCEEEECSSCH---HHHHHHHHHHSCS-EEEEEC
T ss_pred CCeEEEEeCCcH---HHHHHHHHHCCCC-cEEecC
Confidence 999999999998 2444555566544 566654
No 111
>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}
Probab=86.62 E-value=3 Score=40.24 Aligned_cols=92 Identities=12% Similarity=0.142 Sum_probs=59.6
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEG 416 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~ 416 (623)
..||.|+|+|..|..+|..|... |... ..+++++|++- .+ + . ....
T Consensus 4 ~m~i~iiG~G~mG~~~a~~l~~~-----g~~~------~~~v~~~~~~~----~~---------~-----g-----~~~~ 49 (262)
T 2rcy_A 4 NIKLGFMGLGQMGSALAHGIANA-----NIIK------KENLFYYGPSK----KN---------T-----T-----LNYM 49 (262)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHH-----TSSC------GGGEEEECSSC----CS---------S-----S-----SEEC
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-----CCCC------CCeEEEEeCCc----cc---------C-----c-----eEEe
Confidence 45899999999999999988765 6311 13588888741 11 0 0 1112
Q ss_pred CCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCC
Q 040403 417 ASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTN 467 (623)
Q Consensus 417 ~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~ 467 (623)
.++.|+++ ++|++| ++. +....+++++.+ ..+.+..+|+.++|..+
T Consensus 50 ~~~~~~~~--~~D~vi-~~v-~~~~~~~v~~~l-~~~l~~~~vv~~~~gi~ 95 (262)
T 2rcy_A 50 SSNEELAR--HCDIIV-CAV-KPDIAGSVLNNI-KPYLSSKLLISICGGLN 95 (262)
T ss_dssp SCHHHHHH--HCSEEE-ECS-CTTTHHHHHHHS-GGGCTTCEEEECCSSCC
T ss_pred CCHHHHHh--cCCEEE-EEe-CHHHHHHHHHHH-HHhcCCCEEEEECCCCC
Confidence 35777777 678776 332 234568888888 44445667888888775
No 112
>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}
Probab=86.19 E-value=0.61 Score=49.89 Aligned_cols=107 Identities=17% Similarity=0.293 Sum_probs=55.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC-------cccCCCCC---CChhhHHhHHHhhh
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG-------LITEDREN---IDPDAKPFARKVNE 407 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G-------Li~~~r~~---l~~~~~~fA~~~~~ 407 (623)
.||.|+|||+=|+.+|..|.+-=.. .+. .-+-.=++|..|..= .|...+.+ |+..+.| ..
T Consensus 35 ~KI~ViGaGsWGTALA~~la~ng~~---~~~--~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp-----~~ 104 (391)
T 4fgw_A 35 FKVTVIGSGNWGTTIAKVVAENCKG---YPE--VFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLP-----DN 104 (391)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHH---CTT--TEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCC-----SS
T ss_pred CeEEEECcCHHHHHHHHHHHHcCCC---ccc--cCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCC-----CC
Confidence 5999999999999999999875111 110 000012467655430 12222211 2222111 00
Q ss_pred hcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecC
Q 040403 408 ISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMS 463 (623)
Q Consensus 408 ~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLS 463 (623)
.....+|.++++ +.|++|=+ +|-.|.+++++.++....+..+|..++
T Consensus 105 -----i~~t~dl~~al~--~ad~ii~a--vPs~~~r~~l~~l~~~~~~~~~iv~~~ 151 (391)
T 4fgw_A 105 -----LVANPDLIDSVK--DVDIIVFN--IPHQFLPRICSQLKGHVDSHVRAISCL 151 (391)
T ss_dssp -----EEEESCHHHHHT--TCSEEEEC--SCGGGHHHHHHHHTTTSCTTCEEEECC
T ss_pred -----cEEeCCHHHHHh--cCCEEEEE--CChhhhHHHHHHhccccCCCceeEEec
Confidence 112457888888 67776522 344577888888833333333444443
No 113
>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*
Probab=85.98 E-value=0.75 Score=47.86 Aligned_cols=115 Identities=16% Similarity=0.222 Sum_probs=69.0
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCC-CCCCChhhHHhHHHhhhhcccccCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITED-RENIDPDAKPFARKVNEISRQGLWE 415 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~-r~~l~~~~~~fA~~~~~~~~~~~~~ 415 (623)
..||.|+|||..|..+|..|... |+ ...+.++|..-=..++ ..+|.+. .+|.. . ..-
T Consensus 9 ~~kV~ViGaG~vG~~~a~~l~~~-----~~--------~~el~l~D~~~~k~~g~a~DL~~~-~~~~~---~-----~~i 66 (326)
T 3vku_A 9 HQKVILVGDGAVGSSYAYAMVLQ-----GI--------AQEIGIVDIFKDKTKGDAIDLEDA-LPFTS---P-----KKI 66 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH-----TC--------CSEEEEECSCHHHHHHHHHHHHTT-GGGSC---C-----CEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-----CC--------CCeEEEEeCChHHHHHHHhhHhhh-hhhcC---C-----cEE
Confidence 57999999999999999888774 65 2479999983100000 0011111 01110 0 001
Q ss_pred CCCHHHHHhhcCCcEEEeccCCC---C-----CC------CHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcc
Q 040403 416 GASLVEVVQQVKPDVLLGLSAVG---G-----LF------SKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSI 479 (623)
Q Consensus 416 ~~~L~e~V~~vkptvLIG~S~~~---g-----~F------t~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~w 479 (623)
..+..++++ +.|++|=+.+.+ | +| -+++++.| .++++.-+|+-.|||. .+..+-+++.
T Consensus 67 ~~~~~~a~~--~aDiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i-~~~~p~a~ilvvtNPv---di~t~~~~k~ 138 (326)
T 3vku_A 67 YSAEYSDAK--DADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPI-VDSGFNGIFLVAANPV---DILTYATWKL 138 (326)
T ss_dssp EECCGGGGT--TCSEEEECCCCC----------------CHHHHHHHH-HTTTCCSEEEECSSSH---HHHHHHHHHH
T ss_pred EECcHHHhc--CCCEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHH-HhcCCceEEEEccCch---HHHHHHHHHh
Confidence 122345666 788877444433 1 23 36888899 8899999999999998 3444555554
No 114
>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5
Probab=85.85 E-value=0.75 Score=46.12 Aligned_cols=49 Identities=20% Similarity=0.182 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 317 AVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 317 ~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
...|++.+++..+.+ +++.+++|+|||.+|.++|..|.. + | +++++|++
T Consensus 111 d~~G~~~~L~~~~~~---l~~k~vlV~GaGgiG~aia~~L~~----~-G-----------~V~v~~r~ 159 (287)
T 1nvt_A 111 DGIGARMALEEEIGR---VKDKNIVIYGAGGAARAVAFELAK----D-N-----------NIIIANRT 159 (287)
T ss_dssp HHHHHHHHHHHHHCC---CCSCEEEEECCSHHHHHHHHHHTS----S-S-----------EEEEECSS
T ss_pred CHHHHHHHHHHhCCC---cCCCEEEEECchHHHHHHHHHHHH----C-C-----------CEEEEECC
Confidence 678899999888888 999999999998666666655543 2 3 58888874
No 115
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=85.84 E-value=0.72 Score=46.74 Aligned_cols=99 Identities=22% Similarity=0.192 Sum_probs=59.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHh---h--hhcc--
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKV---N--EISR-- 410 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~---~--~~~~-- 410 (623)
.||.|+|+|+-|..+|..|... | .+++++|+.-. ..+.+.. + ....
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~-----g----------~~V~~~~r~~~------------~~i~~~Gl~~~~~~~g~~~ 55 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKT-----G----------HCVSVVSRSDY------------ETVKAKGIRIRSATLGDYT 55 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHT-----T----------CEEEEECSTTH------------HHHHHHCEEEEETTTCCEE
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----C----------CeEEEEeCChH------------HHHHhCCcEEeecCCCcEE
Confidence 5899999999999999888764 6 36788887421 1111100 0 0000
Q ss_pred cc-cCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCC
Q 040403 411 QG-LWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTN 467 (623)
Q Consensus 411 ~~-~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~ 467 (623)
|. .....++.++.+ .+|++| ++. +--.++++++.++....+..+|+.+.|-..
T Consensus 56 ~~~~~~~~~~~~~~~--~~DlVi-lav-K~~~~~~~l~~l~~~l~~~t~Iv~~~nGi~ 109 (320)
T 3i83_A 56 FRPAAVVRSAAELET--KPDCTL-LCI-KVVEGADRVGLLRDAVAPDTGIVLISNGID 109 (320)
T ss_dssp ECCSCEESCGGGCSS--CCSEEE-ECC-CCCTTCCHHHHHTTSCCTTCEEEEECSSSS
T ss_pred EeeeeeECCHHHcCC--CCCEEE-Eec-CCCChHHHHHHHHhhcCCCCEEEEeCCCCC
Confidence 00 111234555443 678877 553 333467899998444556678889999774
No 116
>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}
Probab=85.81 E-value=1.8 Score=47.39 Aligned_cols=101 Identities=11% Similarity=0.184 Sum_probs=60.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGA 417 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~ 417 (623)
.+|.|+|+|..|.++|..|.+. |. +++++|+. .+....+...... +.+.....
T Consensus 11 ~~IgvIGlG~MG~~lA~~La~~-----G~----------~V~v~dr~----------~~~~~~l~~~~~~--~~gi~~~~ 63 (497)
T 2p4q_A 11 ADFGLIGLAVMGQNLILNAADH-----GF----------TVCAYNRT----------QSKVDHFLANEAK--GKSIIGAT 63 (497)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT-----TC----------CEEEECSS----------SHHHHHHHHTTTT--TSSEECCS
T ss_pred CCEEEEeeHHHHHHHHHHHHHC-----CC----------EEEEEeCC----------HHHHHHHHccccc--CCCeEEeC
Confidence 5899999999999999998874 73 47777763 1122223210000 00012345
Q ss_pred CHHHHHhhc-CCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCC
Q 040403 418 SLVEVVQQV-KPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPT 466 (623)
Q Consensus 418 ~L~e~V~~v-kptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt 466 (623)
++.|+++.. +||++| ++-..+...+++++.++....+.-||.-+||-.
T Consensus 64 s~~e~v~~l~~aDvVi-l~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~~~ 112 (497)
T 2p4q_A 64 SIEDFISKLKRPRKVM-LLVKAGAPVDALINQIVPLLEKGDIIIDGGNSH 112 (497)
T ss_dssp SHHHHHHTSCSSCEEE-ECCCSSHHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred CHHHHHhcCCCCCEEE-EEcCChHHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence 788888742 378776 343344456778877722234456788888744
No 117
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Probab=85.71 E-value=5.1 Score=40.86 Aligned_cols=110 Identities=16% Similarity=0.264 Sum_probs=59.4
Q ss_pred cchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccC
Q 040403 310 VQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITE 389 (623)
Q Consensus 310 iQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~ 389 (623)
.++.....++..+.+++..+.+ .+++|+|+|||..|...+++... .|. ++++.+|+.
T Consensus 157 ~~aa~~~~~~ta~~~l~~~~~~----~g~~VlV~GaG~vG~~aiqlak~-----~Ga---------~~Vi~~~~~----- 213 (363)
T 3m6i_A 157 ENGAMLEPLSVALAGLQRAGVR----LGDPVLICGAGPIGLITMLCAKA-----AGA---------CPLVITDID----- 213 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCC----TTCCEEEECCSHHHHHHHHHHHH-----TTC---------CSEEEEESC-----
T ss_pred HHHHhhhHHHHHHHHHHHcCCC----CCCEEEEECCCHHHHHHHHHHHH-----cCC---------CEEEEECCC-----
Confidence 3444333455566777776665 57899999998777665544433 374 458888762
Q ss_pred CCCCCChhhHHhHHHhhh-hccccc--CCCCCHHHHHhh----cCCcEEEeccCCCCCCCHHHHHHc
Q 040403 390 DRENIDPDAKPFARKVNE-ISRQGL--WEGASLVEVVQQ----VKPDVLLGLSAVGGLFSKEVLEAM 449 (623)
Q Consensus 390 ~r~~l~~~~~~fA~~~~~-~~~~~~--~~~~~L~e~V~~----vkptvLIG~S~~~g~Ft~evv~~M 449 (623)
+.+..+++.-.+ .-.... ....++.+.|+. -+.|++|=+++.+. .-++.++.+
T Consensus 214 ------~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvid~~g~~~-~~~~~~~~l 273 (363)
T 3m6i_A 214 ------EGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIEPAVALECTGVES-SIAAAIWAV 273 (363)
T ss_dssp ------HHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSSCCCSEEEECSCCHH-HHHHHHHHS
T ss_pred ------HHHHHHHHHhchhcccccccccchHHHHHHHHHHhCCCCCCEEEECCCChH-HHHHHHHHh
Confidence 455566653210 000000 011234444443 26899988775321 124455555
No 118
>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A
Probab=85.65 E-value=4.6 Score=43.09 Aligned_cols=122 Identities=16% Similarity=0.140 Sum_probs=80.7
Q ss_pred cCCccccCc---chhHHHHHHHHHHHHHHh--------------------CCCCCCCCCceEEEeCcchHHHHHHHHHHH
Q 040403 302 KYRMFNDDV---QGTAGVAVAGLLGAVRAQ--------------------GRSMIDFPKQKIVVAGAGSAGLGVLNAARK 358 (623)
Q Consensus 302 ~~~~FNDDi---QGTaaV~lAgll~A~r~~--------------------g~~~~~l~d~riv~~GAGsAg~GIA~ll~~ 358 (623)
.+.+.|--- +.+|=-+++.+|+..|-. +.. |.+.+|.|+|.|..|..+|+.+..
T Consensus 136 gI~V~n~~g~~~~~VAE~al~liL~~~R~~~~~~~~~~~g~W~~~~~~~~~~~---l~gktvGIIGlG~IG~~vA~~l~a 212 (393)
T 2nac_A 136 NVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYD---LEAMHVGTVAAGRIGLAVLRRLAP 212 (393)
T ss_dssp TCEEEECTTTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCC---CTTCEEEEECCSHHHHHHHHHHGG
T ss_pred CEEEEeCCCcccHHHHHHHHHHHHHHHhccHHHHHHHHcCCCCccccccCCcc---CCCCEEEEEeECHHHHHHHHHHHh
Confidence 466666322 234444788888777522 344 999999999999999999998765
Q ss_pred HHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEecc---
Q 040403 359 TMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLS--- 435 (623)
Q Consensus 359 ~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S--- 435 (623)
. |+ +++.+|+... ....++.. . .....+|.|+++ +.|+++=.-
T Consensus 213 ~-----G~----------~V~~~d~~~~-----------~~~~~~~~-G-----~~~~~~l~ell~--~aDvV~l~~Plt 258 (393)
T 2nac_A 213 F-----DV----------HLHYTDRHRL-----------PESVEKEL-N-----LTWHATREDMYP--VCDVVTLNCPLH 258 (393)
T ss_dssp G-----TC----------EEEEECSSCC-----------CHHHHHHH-T-----CEECSSHHHHGG--GCSEEEECSCCC
T ss_pred C-----CC----------EEEEEcCCcc-----------chhhHhhc-C-----ceecCCHHHHHh--cCCEEEEecCCc
Confidence 3 73 4777886410 11222110 1 111247999998 789888542
Q ss_pred -CCCCCCCHHHHHHcccCCCCCCEEEecCC
Q 040403 436 -AVGGLFSKEVLEAMRGSTSTRPAIFAMSN 464 (623)
Q Consensus 436 -~~~g~Ft~evv~~M~a~~~erPIIFaLSN 464 (623)
...+.|+++.++.| .+.-+|.=.|.
T Consensus 259 ~~t~~li~~~~l~~m----k~gailIN~aR 284 (393)
T 2nac_A 259 PETEHMINDETLKLF----KRGAYIVNTAR 284 (393)
T ss_dssp TTTTTCBSHHHHTTS----CTTEEEEECSC
T ss_pred hHHHHHhhHHHHhhC----CCCCEEEECCC
Confidence 23578999999999 56678887776
No 119
>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*
Probab=85.52 E-value=3.7 Score=41.51 Aligned_cols=114 Identities=10% Similarity=0.156 Sum_probs=65.0
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhh--hh-cc--c
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVN--EI-SR--Q 411 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~--~~-~~--~ 411 (623)
..||.|+|+|.-|..+|..|... |... .....+++++|+..-.. . ......+.+... .+ .. .
T Consensus 8 ~mkI~iIG~G~mG~~~a~~l~~~-----g~~~---~~~~~~V~~~~r~~~~~-~----~~~~~~l~~~~~~~~~~~~~~~ 74 (354)
T 1x0v_A 8 SKKVCIVGSGNWGSAIAKIVGGN-----AAQL---AQFDPRVTMWVFEEDIG-G----KKLTEIINTQHENVKYLPGHKL 74 (354)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHH-----HHHC---TTEEEEEEEECCCCBSS-S----SBHHHHHHHHSCCTTTSTTCCC
T ss_pred CCeEEEECCCHHHHHHHHHHHhc-----CCcc---cCCCCeEEEEEcChhhh-h----hHHHHHHHhcCcccccCCcccC
Confidence 46999999999999999998875 5210 00013688888753210 0 001111211000 00 00 0
Q ss_pred --ccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCC
Q 040403 412 --GLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTN 467 (623)
Q Consensus 412 --~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~ 467 (623)
......++.++++ ++|++| ++ ++.-..+++++.++....+..+|..++|-.+
T Consensus 75 ~~~~~~~~~~~~~~~--~aD~Vi-la-v~~~~~~~v~~~i~~~l~~~~ivv~~~~Gi~ 128 (354)
T 1x0v_A 75 PPNVVAVPDVVQAAE--DADILI-FV-VPHQFIGKICDQLKGHLKANATGISLIKGVD 128 (354)
T ss_dssp CTTEEEESSHHHHHT--TCSEEE-EC-CCGGGHHHHHHHHTTCSCTTCEEEECCCCBC
T ss_pred ccCeEEEcCHHHHHc--CCCEEE-Ee-CCHHHHHHHHHHHHhhCCCCCEEEEECCccC
Confidence 0011256888888 788877 33 2345678999988333345678999999654
No 120
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Probab=85.26 E-value=0.54 Score=49.50 Aligned_cols=37 Identities=27% Similarity=0.293 Sum_probs=33.2
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
|++.||+|+|||..|.-+|..|+.+ |+ ++|.++|.+=
T Consensus 32 L~~~~VlIvGaGGlGs~va~~La~a-----GV---------g~ItlvD~D~ 68 (340)
T 3rui_A 32 IKNTKVLLLGAGTLGCYVSRALIAW-----GV---------RKITFVDNGT 68 (340)
T ss_dssp HHTCEEEEECCSHHHHHHHHHHHHT-----TC---------CEEEEECCCB
T ss_pred HhCCEEEEECCCHHHHHHHHHHHHc-----CC---------CEEEEecCCE
Confidence 6789999999999999999999986 96 7899999863
No 121
>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}
Probab=85.23 E-value=1.7 Score=44.90 Aligned_cols=113 Identities=12% Similarity=0.165 Sum_probs=62.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhh--h-hcc--c-
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVN--E-ISR--Q- 411 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~--~-~~~--~- 411 (623)
.||.|+|+|.-|..+|..|..+ |... ..-..+++++|+..-+. .+ .....+.+... . ..+ .
T Consensus 22 ~kI~iIGaG~mG~alA~~L~~~-----G~~~---~~~~~~V~~~~r~~~~~-~~----~~~~~l~~~~~~~~~~~~~~~~ 88 (375)
T 1yj8_A 22 LKISILGSGNWASAISKVVGTN-----AKNN---YLFENEVRMWIRDEFVN-GE----RMVDIINNKHENTKYLKGVPLP 88 (375)
T ss_dssp BCEEEECCSHHHHHHHHHHHHH-----HHHC---TTBCSCEEEECCSCC----C----CHHHHHHHHCBCTTTSTTCBCC
T ss_pred CEEEEECcCHHHHHHHHHHHHc-----CCcc---CCCCCeEEEEECChhhh-hH----HHHHHHHhcCcccccCCcccCc
Confidence 4799999999999999999875 5100 00014588888752210 00 01112221100 0 000 0
Q ss_pred -ccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHccc----CCCCCCEEEecCCCCC
Q 040403 412 -GLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRG----STSTRPAIFAMSNPTN 467 (623)
Q Consensus 412 -~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a----~~~erPIIFaLSNPt~ 467 (623)
+.....++.|+++ ++|++|= + ++.-..+++++.++. ...+..+|..++|-.+
T Consensus 89 ~~i~~~~~~~ea~~--~aDvVil-a-v~~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~ 145 (375)
T 1yj8_A 89 HNIVAHSDLASVIN--DADLLIF-I-VPCQYLESVLASIKESESIKIASHAKAISLTKGFI 145 (375)
T ss_dssp TTEEEESSTHHHHT--TCSEEEE-C-CCHHHHHHHHHHHTC---CCCCTTCEEEECCCSCE
T ss_pred CCeEEECCHHHHHc--CCCEEEE-c-CCHHHHHHHHHHHhhhhhccCCCCCEEEEeCCccc
Confidence 0011346788887 7887773 3 233567888888832 3345678889998654
No 122
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*
Probab=85.19 E-value=1.7 Score=43.62 Aligned_cols=107 Identities=16% Similarity=0.229 Sum_probs=60.4
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhc-ccccCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEIS-RQGLWE 415 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~-~~~~~~ 415 (623)
..||.|+|||+.|..+|..|... |. ..+++++|++-- + +......+.+. ..+. ......
T Consensus 7 ~mkI~IiGaG~vG~~~a~~l~~~-----g~--------~~~V~l~d~~~~----~--~~~~~~~~~~~-~~~~~~~~v~~ 66 (319)
T 1lld_A 7 PTKLAVIGAGAVGSTLAFAAAQR-----GI--------AREIVLEDIAKE----R--VEAEVLDMQHG-SSFYPTVSIDG 66 (319)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-----TC--------CSEEEEECSSHH----H--HHHHHHHHHHT-GGGSTTCEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-----CC--------CCEEEEEeCChh----H--HHHHHHHHHhh-hhhcCCeEEEe
Confidence 46999999999999999887653 63 136999998520 0 00000001100 0000 000000
Q ss_pred CCCHHHHHhhcCCcEEEeccCCCCCC--C------------HHHHHHcccCCCCCCEEEecCCCCC
Q 040403 416 GASLVEVVQQVKPDVLLGLSAVGGLF--S------------KEVLEAMRGSTSTRPAIFAMSNPTN 467 (623)
Q Consensus 416 ~~~L~e~V~~vkptvLIG~S~~~g~F--t------------~evv~~M~a~~~erPIIFaLSNPt~ 467 (623)
..+. ++++ +.|++|=+.+.+..- + +++++.| ..+++..+|+.++||..
T Consensus 67 ~~~~-~~~~--~aD~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i-~~~~~~~~vi~~~Np~~ 128 (319)
T 1lld_A 67 SDDP-EICR--DADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNL-VKVAPNAIYMLITNPVD 128 (319)
T ss_dssp ESCG-GGGT--TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHH-HHHCTTSEEEECCSSHH
T ss_pred CCCH-HHhC--CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHhCCCceEEEecCchH
Confidence 1132 4555 789888544333221 1 1788888 55678889999999984
No 123
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B
Probab=85.09 E-value=7.4 Score=40.37 Aligned_cols=93 Identities=14% Similarity=0.074 Sum_probs=63.0
Q ss_pred CCCceEEEeCcchHHHHHHHHHH-HHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhccccc
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAAR-KTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGL 413 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~-~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~ 413 (623)
|.+.+|.|+|.|..|..+|+.+. .. |+ +++.+|+..- +...+.. .. .
T Consensus 161 l~g~~vgIIG~G~IG~~vA~~l~~~~-----G~----------~V~~~d~~~~-----------~~~~~~~-~g-----~ 208 (348)
T 2w2k_A 161 PRGHVLGAVGLGAIQKEIARKAVHGL-----GM----------KLVYYDVAPA-----------DAETEKA-LG-----A 208 (348)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTT-----CC----------EEEEECSSCC-----------CHHHHHH-HT-----C
T ss_pred CCCCEEEEEEECHHHHHHHHHHHHhc-----CC----------EEEEECCCCc-----------chhhHhh-cC-----c
Confidence 99999999999999999999886 43 73 5888887421 0111111 01 1
Q ss_pred CCCCCHHHHHhhcCCcEEEeccC----CCCCCCHHHHHHcccCCCCCCEEEecCCC
Q 040403 414 WEGASLVEVVQQVKPDVLLGLSA----VGGLFSKEVLEAMRGSTSTRPAIFAMSNP 465 (623)
Q Consensus 414 ~~~~~L~e~V~~vkptvLIG~S~----~~g~Ft~evv~~M~a~~~erPIIFaLSNP 465 (623)
....+|.|+++ +.|+++=.-. ..+.++++.++.| .+..+|.-.|.-
T Consensus 209 ~~~~~l~ell~--~aDvVil~vp~~~~t~~li~~~~l~~m----k~gailin~srg 258 (348)
T 2w2k_A 209 ERVDSLEELAR--RSDCVSVSVPYMKLTHHLIDEAFFAAM----KPGSRIVNTARG 258 (348)
T ss_dssp EECSSHHHHHH--HCSEEEECCCCSGGGTTCBCHHHHHHS----CTTEEEEECSCG
T ss_pred EEeCCHHHHhc--cCCEEEEeCCCChHHHHHhhHHHHhcC----CCCCEEEECCCC
Confidence 11247899888 7898885421 2378889999999 566677766653
No 124
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*
Probab=84.95 E-value=2.8 Score=41.92 Aligned_cols=32 Identities=31% Similarity=0.547 Sum_probs=27.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.||.|+|+|..|.+||..+..+ |. +++++|++
T Consensus 16 ~~I~VIG~G~mG~~iA~~la~~-----G~----------~V~~~d~~ 47 (302)
T 1f0y_A 16 KHVTVIGGGLMGAGIAQVAAAT-----GH----------TVVLVDQT 47 (302)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----TC----------EEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC----------eEEEEECC
Confidence 5899999999999999998774 73 58888874
No 125
>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*
Probab=84.71 E-value=2.4 Score=45.83 Aligned_cols=101 Identities=13% Similarity=0.175 Sum_probs=61.0
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEG 416 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~ 416 (623)
..+|.|+|+|..|..+|..|... |. +++++|+. .+....+++.... .+ ....
T Consensus 5 ~~~IgvIG~G~mG~~lA~~L~~~-----G~----------~V~v~dr~----------~~~~~~l~~~~~~-~g--i~~~ 56 (474)
T 2iz1_A 5 QANFGVVGMAVMGKNLALNVESR-----GY----------TVAIYNRT----------TSKTEEVFKEHQD-KN--LVFT 56 (474)
T ss_dssp TBSEEEECCSHHHHHHHHHHHHT-----TC----------CEEEECSS----------HHHHHHHHHHTTT-SC--EEEC
T ss_pred CCcEEEEeeHHHHHHHHHHHHhC-----CC----------EEEEEcCC----------HHHHHHHHHhCcC-CC--eEEe
Confidence 46899999999999999988764 73 47777763 1111223221000 00 1234
Q ss_pred CCHHHHHhhc-CCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCC
Q 040403 417 ASLVEVVQQV-KPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPT 466 (623)
Q Consensus 417 ~~L~e~V~~v-kptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt 466 (623)
.++.|+++.. +||++| ++..++...+++++.++....+..||.-+||-.
T Consensus 57 ~s~~e~v~~l~~aDvVi-lavp~~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (474)
T 2iz1_A 57 KTLEEFVGSLEKPRRIM-LMVQAGAATDATIKSLLPLLDIGDILIDGGNTH 106 (474)
T ss_dssp SSHHHHHHTBCSSCEEE-ECCCTTHHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred CCHHHHHhhccCCCEEE-EEccCchHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 5788888742 388777 443444456778877622234456788888864
No 126
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}
Probab=84.65 E-value=8.1 Score=40.33 Aligned_cols=120 Identities=21% Similarity=0.231 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHHHH--------------------hCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhh
Q 040403 313 TAGVAVAGLLGAVRA--------------------QGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFD 372 (623)
Q Consensus 313 TaaV~lAgll~A~r~--------------------~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~e 372 (623)
+|=-+++-+|+..|- .|.. |.+.+|.|+|.|..|..+|+.+... |+
T Consensus 130 vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~---l~gktiGIIGlG~IG~~vA~~l~~~-----G~------ 195 (340)
T 4dgs_A 130 VADLGIALMLAVLRRVGDGDRLVREGRWAAGEQLPLGHS---PKGKRIGVLGLGQIGRALASRAEAF-----GM------ 195 (340)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHTTCC------CCCCC---CTTCEEEEECCSHHHHHHHHHHHTT-----TC------
T ss_pred HHHHHHHHHHHHHhChHHHHHHHhcCCcccccCcCcccc---ccCCEEEEECCCHHHHHHHHHHHHC-----CC------
Confidence 455577777777653 1334 8999999999999999999988753 74
Q ss_pred hccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEecc----CCCCCCCHHHHHH
Q 040403 373 SARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLS----AVGGLFSKEVLEA 448 (623)
Q Consensus 373 eA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S----~~~g~Ft~evv~~ 448 (623)
+++.+|+..- . . .. .....+|.|+++ +.|+++=.- ...+.++++.++.
T Consensus 196 ----~V~~~dr~~~----~-~------------~~-----~~~~~sl~ell~--~aDvVil~vP~t~~t~~li~~~~l~~ 247 (340)
T 4dgs_A 196 ----SVRYWNRSTL----S-G------------VD-----WIAHQSPVDLAR--DSDVLAVCVAASAATQNIVDASLLQA 247 (340)
T ss_dssp ----EEEEECSSCC----T-T------------SC-----CEECSSHHHHHH--TCSEEEECC----------CHHHHHH
T ss_pred ----EEEEEcCCcc----c-c------------cC-----ceecCCHHHHHh--cCCEEEEeCCCCHHHHHHhhHHHHhc
Confidence 5778887421 0 0 01 112347999999 899988532 1347889999999
Q ss_pred cccCCCCCCEEEecCCCCCCCCCCHHHHhc
Q 040403 449 MRGSTSTRPAIFAMSNPTNNAECTPEEAFS 478 (623)
Q Consensus 449 M~a~~~erPIIFaLSNPt~~~E~tpeda~~ 478 (623)
| .+.-++.=.|.=..--|-.-.+|++
T Consensus 248 m----k~gailIN~aRG~vvde~aL~~aL~ 273 (340)
T 4dgs_A 248 L----GPEGIVVNVARGNVVDEDALIEALK 273 (340)
T ss_dssp T----TTTCEEEECSCC-------------
T ss_pred C----CCCCEEEECCCCcccCHHHHHHHHH
Confidence 9 5667888787754333333344443
No 127
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A
Probab=84.55 E-value=0.53 Score=48.45 Aligned_cols=114 Identities=13% Similarity=0.146 Sum_probs=65.9
Q ss_pred CceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC--CcccCCCCCCChhhHHhHHHhhhhccccc
Q 040403 337 KQKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK--GLITEDRENIDPDAKPFARKVNEISRQGL 413 (623)
Q Consensus 337 d~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~--GLi~~~r~~l~~~~~~fA~~~~~~~~~~~ 413 (623)
..||+|.|| |..|..++..|+.. |+-. ..-...++++|.. .. .++ +......+.+....+. ...
T Consensus 5 ~~KI~ViGaaG~VG~~l~~~L~~~-----~~~~---~~~~~ev~l~Di~~~~~--~~~--~~g~~~dl~~~~~~~~-~~i 71 (329)
T 1b8p_A 5 PMRVAVTGAAGQICYSLLFRIANG-----DMLG---KDQPVILQLLEIPNEKA--QKA--LQGVMMEIDDCAFPLL-AGM 71 (329)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTT-----TTTC---TTCCEEEEEECCSCHHH--HHH--HHHHHHHHHTTTCTTE-EEE
T ss_pred CCEEEEECCCChHHHHHHHHHHhC-----CCcC---CCCCCEEEEEcCCCccc--ccc--chhhHHHHhhhccccc-CcE
Confidence 369999998 99999988777652 5411 1112469999974 10 000 0000111111000000 001
Q ss_pred CCCCCHHHHHhhcCCcEEEeccCCC---CC-----------CCHHHHHHcccCCC-CCCEEEecCCCC
Q 040403 414 WEGASLVEVVQQVKPDVLLGLSAVG---GL-----------FSKEVLEAMRGSTS-TRPAIFAMSNPT 466 (623)
Q Consensus 414 ~~~~~L~e~V~~vkptvLIG~S~~~---g~-----------Ft~evv~~M~a~~~-erPIIFaLSNPt 466 (623)
....++.++++ +.|++|=+.+.+ |. .++++++.+ .+++ .+.+|+=.|||.
T Consensus 72 ~~~~~~~~al~--~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i-~~~~~p~a~ii~~SNPv 136 (329)
T 1b8p_A 72 TAHADPMTAFK--DADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAI-DAVASRNIKVLVVGNPA 136 (329)
T ss_dssp EEESSHHHHTT--TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHH-HHHSCTTCEEEECSSSH
T ss_pred EEecCcHHHhC--CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHhcCCCeEEEEccCch
Confidence 12357899998 889988555544 31 256788888 7776 777777789998
No 128
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=84.49 E-value=0.86 Score=40.60 Aligned_cols=25 Identities=32% Similarity=0.516 Sum_probs=21.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCc
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNE 368 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~ 368 (623)
.|+|+|||.||+-.|..|.+. |++.
T Consensus 4 dV~IIGaGpaGL~aA~~La~~-----G~~V 28 (336)
T 3kkj_A 4 PIAIIGTGIAGLSAAQALTAA-----GHQV 28 (336)
T ss_dssp CEEEECCSHHHHHHHHHHHHT-----TCCE
T ss_pred CEEEECcCHHHHHHHHHHHHC-----CCCE
Confidence 499999999999999988875 9754
No 129
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Probab=84.36 E-value=0.93 Score=46.68 Aligned_cols=115 Identities=16% Similarity=0.207 Sum_probs=67.4
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhh-cccccCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEI-SRQGLWE 415 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~-~~~~~~~ 415 (623)
..||.|+|||+.|..++-+|... |+ ...|+|+|.+- ++ +......+.+.. .+ .++ .-
T Consensus 5 ~~KI~IiGaG~vG~~~a~~l~~~-----~~--------~~el~L~Di~~----~~--~~g~~~dl~~~~-~~~~~~--~v 62 (318)
T 1ez4_A 5 HQKVVLVGDGAVGSSYAFAMAQQ-----GI--------AEEFVIVDVVK----DR--TKGDALDLEDAQ-AFTAPK--KI 62 (318)
T ss_dssp BCEEEEECCSHHHHHHHHHHHHH-----TC--------CSEEEEECSSH----HH--HHHHHHHHHGGG-GGSCCC--EE
T ss_pred CCEEEEECCCHHHHHHHHHHHcC-----CC--------CCEEEEEeCCc----hH--HHHHHHHHHHHH-HhcCCe--EE
Confidence 36999999999999988876653 54 25799999831 11 111111221110 00 000 00
Q ss_pred CCCHHHHHhhcCCcEEEeccCCCCC--------------CCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcc
Q 040403 416 GASLVEVVQQVKPDVLLGLSAVGGL--------------FSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSI 479 (623)
Q Consensus 416 ~~~L~e~V~~vkptvLIG~S~~~g~--------------Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~w 479 (623)
..+-.++++ +.|++|=+.+.+.. .-+++++.| .++++.-+|+-.|||.. ...+-+++.
T Consensus 63 ~~~~~~a~~--~aDvVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i-~~~~p~a~iiv~tNPv~---~~t~~~~k~ 134 (318)
T 1ez4_A 63 YSGEYSDCK--DADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPV-VDSGFDGIFLVAANPVD---ILTYATWKF 134 (318)
T ss_dssp EECCGGGGT--TCSEEEECCCC----------CHHHHHHHHHHHHHHH-HHTTCCSEEEECSSSHH---HHHHHHHHH
T ss_pred EECCHHHhC--CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHhCCCeEEEEeCCcHH---HHHHHHHHH
Confidence 113456677 89999855544321 224577777 77899999999999983 344455554
No 130
>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*
Probab=84.32 E-value=1.9 Score=46.73 Aligned_cols=101 Identities=16% Similarity=0.198 Sum_probs=59.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGA 417 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~ 417 (623)
.+|.|+|+|..|..+|..|... |. +++++|+. .+....+.+.... +.+.....
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~-----G~----------~V~v~dr~----------~~~~~~l~~~~~~--g~gi~~~~ 55 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDH-----GF----------VVCAFNRT----------VSKVDDFLANEAK--GTKVLGAH 55 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT-----TC----------CEEEECSS----------THHHHHHHHTTTT--TSSCEECS
T ss_pred CeEEEEChHHHHHHHHHHHHHC-----CC----------eEEEEeCC----------HHHHHHHHhcccc--CCCeEEeC
Confidence 4799999999999999988764 73 47778763 1122223220000 00012245
Q ss_pred CHHHHHhhc-CCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCC
Q 040403 418 SLVEVVQQV-KPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPT 466 (623)
Q Consensus 418 ~L~e~V~~v-kptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt 466 (623)
++.|+++.+ +||++| ++...+...+++++.++....+.-||+-+||-.
T Consensus 56 ~~~e~v~~l~~aDvVi-laVp~~~~v~~vl~~l~~~l~~g~iII~~s~~~ 104 (482)
T 2pgd_A 56 SLEEMVSKLKKPRRII-LLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSE 104 (482)
T ss_dssp SHHHHHHHBCSSCEEE-ECSCTTHHHHHHHHHHHHHCCTTCEEEECSCCC
T ss_pred CHHHHHhhccCCCEEE-EeCCChHHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 788887532 688777 343344456777776522223456788888855
No 131
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}
Probab=84.28 E-value=1.9 Score=42.68 Aligned_cols=32 Identities=16% Similarity=0.098 Sum_probs=26.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.||.|+|+|..|..+|..+... |. +++++|++
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~-----G~----------~V~~~dr~ 33 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRA-----GF----------DVTVWNRN 33 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHHH-----TC----------CEEEECSS
T ss_pred CeEEEEccCHHHHHHHHHHHHC-----CC----------eEEEEcCC
Confidence 3799999999999999998875 73 47777774
No 132
>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*
Probab=84.28 E-value=4.3 Score=42.35 Aligned_cols=120 Identities=18% Similarity=0.210 Sum_probs=66.2
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhh
Q 040403 319 AGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDA 398 (623)
Q Consensus 319 Agll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~ 398 (623)
++.+++..+. . ....++.|+|+|..|..++..+... .+. ++++++|+. .+..
T Consensus 116 ~s~laa~~la-~----~~~~~v~iIGaG~~a~~~a~al~~~----~~~---------~~V~V~~r~----------~~~a 167 (350)
T 1x7d_A 116 TSLMAAQALA-R----PNARKMALIGNGAQSEFQALAFHKH----LGI---------EEIVAYDTD----------PLAT 167 (350)
T ss_dssp HHHHHHHHHS-C----TTCCEEEEECCSTTHHHHHHHHHHH----SCC---------CEEEEECSS----------HHHH
T ss_pred HHHHHHHHhc-c----ccCCeEEEECCcHHHHHHHHHHHHh----CCC---------cEEEEEcCC----------HHHH
Confidence 3445555443 2 3568999999999999888766543 132 678888873 1223
Q ss_pred HHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHH-HcccCCCCCCEEEecCC--CCCCCCCCHH
Q 040403 399 KPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLE-AMRGSTSTRPAIFAMSN--PTNNAECTPE 474 (623)
Q Consensus 399 ~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~-~M~a~~~erPIIFaLSN--Pt~~~E~tpe 474 (623)
+.|++.-....+.......++.|+++ +.|++|=+...+ . .+.++. .+ ..+.-.|+.++. |. +-|+.++
T Consensus 168 ~~la~~~~~~~g~~~~~~~~~~eav~--~aDiVi~aTps~-~-~~pvl~~~~---l~~G~~V~~vgs~~p~-~~El~~~ 238 (350)
T 1x7d_A 168 AKLIANLKEYSGLTIRRASSVAEAVK--GVDIITTVTADK-A-YATIITPDM---LEPGMHLNAVGGDCPG-KTELHAD 238 (350)
T ss_dssp HHHHHHHTTCTTCEEEECSSHHHHHT--TCSEEEECCCCS-S-EEEEECGGG---CCTTCEEEECSCCBTT-BEEECHH
T ss_pred HHHHHHHHhccCceEEEeCCHHHHHh--cCCEEEEeccCC-C-CCceecHHH---cCCCCEEEECCCCCCC-ceeeCHH
Confidence 44553211000000122467999998 789999766432 1 122221 11 123336666664 44 5666654
No 133
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}
Probab=84.20 E-value=4.3 Score=42.16 Aligned_cols=179 Identities=15% Similarity=0.224 Sum_probs=103.4
Q ss_pred hHHHHHHHHHHHHHH----------------hCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccC
Q 040403 313 TAGVAVAGLLGAVRA----------------QGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARS 376 (623)
Q Consensus 313 TaaV~lAgll~A~r~----------------~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~ 376 (623)
+|=-+++.+|+..|- .+.. |.+.+|.|+|.|..|..+|+.+... |+
T Consensus 103 vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~---l~g~tvGIIGlG~IG~~vA~~l~~~-----G~---------- 164 (324)
T 3hg7_A 103 MSEYVFGHLLSLMRQLPLYREQQKQRLWQSHPYQG---LKGRTLLILGTGSIGQHIAHTGKHF-----GM---------- 164 (324)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCCCC---STTCEEEEECCSHHHHHHHHHHHHT-----TC----------
T ss_pred HHHHHHHHHHHHHhChHHHHHHHhhCCCcCCCCcc---cccceEEEEEECHHHHHHHHHHHhC-----CC----------
Confidence 344467777776662 2344 9999999999999999999998764 74
Q ss_pred eEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEecc----CCCCCCCHHHHHHcccC
Q 040403 377 QFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLS----AVGGLFSKEVLEAMRGS 452 (623)
Q Consensus 377 ~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S----~~~g~Ft~evv~~M~a~ 452 (623)
+++.+|+.. .. .. .+. . .....+|.|+++ +.|+++=.- ..-+.|+++.++.|
T Consensus 165 ~V~~~dr~~---~~---~~----~~~----~-----~~~~~~l~ell~--~aDvV~l~lPlt~~T~~li~~~~l~~m--- 220 (324)
T 3hg7_A 165 KVLGVSRSG---RE---RA----GFD----Q-----VYQLPALNKMLA--QADVIVSVLPATRETHHLFTASRFEHC--- 220 (324)
T ss_dssp EEEEECSSC---CC---CT----TCS----E-----EECGGGHHHHHH--TCSEEEECCCCCSSSTTSBCTTTTTCS---
T ss_pred EEEEEcCCh---HH---hh----hhh----c-----ccccCCHHHHHh--hCCEEEEeCCCCHHHHHHhHHHHHhcC---
Confidence 577888764 11 10 010 0 112346899998 899988531 23578888888889
Q ss_pred CCCCCEEEecCCCCCCCCCCHHHHhcccCCcEEEecCCC-CCccccCCCeeccCCCCccccchhHHHHHHHHcCCcccCH
Q 040403 453 TSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGSP-FKDVDLGNGHIGHCNQGNNMYLFPGVGLGTLLSGSRIISD 531 (623)
Q Consensus 453 ~~erPIIFaLSNPt~~~E~tpeda~~wT~Grai~AtGsP-F~pv~~~~G~~~~p~Q~NN~yiFPGiglG~~~~~a~~Itd 531 (623)
.+..++.=.|.-..--|---.+|++ +|+.-.| |-. |.+-..|... .--+..|+.+-|=++- .+. ..
T Consensus 221 -k~gailIN~aRG~~vde~aL~~aL~--~g~i~ga-~lDV~~~EPl~~~~--pL~~~~nvilTPHia~------~t~-~~ 287 (324)
T 3hg7_A 221 -KPGAILFNVGRGNAINEGDLLTALR--TGKLGMA-VLDVFEQEPLPADS--PLWGQPNLIITPHNSA------YSF-PD 287 (324)
T ss_dssp -CTTCEEEECSCGGGBCHHHHHHHHH--TTSSSEE-EESCCSSSSCCTTC--TTTTCTTEEECCSCSS------CCC-HH
T ss_pred -CCCcEEEECCCchhhCHHHHHHHHH--cCCceEE-EeccCCCCCCCCCC--hhhcCCCEEEeCCCcc------ccH-HH
Confidence 6777888777643222222233333 3443211 111 1100010010 0123457778777642 221 25
Q ss_pred HHHHHHHHHHHcccC
Q 040403 532 GMLQAAAECLAEYMT 546 (623)
Q Consensus 532 ~m~~aAA~aLA~~v~ 546 (623)
.|...+++-|.....
T Consensus 288 ~~~~~~~~nl~~~~~ 302 (324)
T 3hg7_A 288 DVAQIFVRNYIRFID 302 (324)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc
Confidence 666667777666654
No 134
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=84.20 E-value=1.3 Score=36.83 Aligned_cols=85 Identities=16% Similarity=0.180 Sum_probs=50.0
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhh-hhcccccC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVN-EISRQGLW 414 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~-~~~~~~~~ 414 (623)
...+|+|+|+|..|..+++.+... |. .+++++|++ +.+........ .+......
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~-----g~---------~~v~~~~r~-----------~~~~~~~~~~~~~~~~~d~~ 58 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTS-----SN---------YSVTVADHD-----------LAALAVLNRMGVATKQVDAK 58 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHHC-----SS---------EEEEEEESC-----------HHHHHHHHTTTCEEEECCTT
T ss_pred CcCeEEEECCCHHHHHHHHHHHhC-----CC---------ceEEEEeCC-----------HHHHHHHHhCCCcEEEecCC
Confidence 457999999999999988887663 62 358888874 11111111000 10000011
Q ss_pred CCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHc
Q 040403 415 EGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAM 449 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M 449 (623)
...++.++++ ++|++|=+. |..++..+++.+
T Consensus 59 ~~~~~~~~~~--~~d~vi~~~--~~~~~~~~~~~~ 89 (118)
T 3ic5_A 59 DEAGLAKALG--GFDAVISAA--PFFLTPIIAKAA 89 (118)
T ss_dssp CHHHHHHHTT--TCSEEEECS--CGGGHHHHHHHH
T ss_pred CHHHHHHHHc--CCCEEEECC--CchhhHHHHHHH
Confidence 1234666666 789998665 445667777776
No 135
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Probab=84.14 E-value=0.71 Score=47.76 Aligned_cols=115 Identities=15% Similarity=0.203 Sum_probs=67.8
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhh-cccccCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEI-SRQGLWE 415 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~-~~~~~~~ 415 (623)
..||.|+|||+.|..++-+|... ++ ...++|+|.+- ++ +......+.+.. .+ .++ .-
T Consensus 9 ~~KI~IiGaG~vG~~la~~l~~~-----~~--------~~el~L~Di~~----~~--~~g~~~dl~~~~-~~~~~~--~i 66 (326)
T 2zqz_A 9 HQKVILVGDGAVGSSYAYAMVLQ-----GI--------AQEIGIVDIFK----DK--TKGDAIDLSNAL-PFTSPK--KI 66 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH-----TC--------CSEEEEECSCH----HH--HHHHHHHHHTTG-GGSCCC--EE
T ss_pred CCEEEEECCCHHHHHHHHHHHcC-----CC--------CCEEEEEeCCc----hH--hHHHHHHHHHHH-HhcCCe--EE
Confidence 47999999999999988877553 54 25799999831 10 111111121110 00 000 00
Q ss_pred CCCHHHHHhhcCCcEEEeccCCCCC--------------CCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcc
Q 040403 416 GASLVEVVQQVKPDVLLGLSAVGGL--------------FSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSI 479 (623)
Q Consensus 416 ~~~L~e~V~~vkptvLIG~S~~~g~--------------Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~w 479 (623)
..+-.++++ +.|++|=+.+.+.. .-+++++.| .++++.-+|+-.|||.. ...+-+++.
T Consensus 67 ~~~~~~a~~--~aDvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i-~~~~p~a~iiv~tNPv~---~~t~~~~k~ 138 (326)
T 2zqz_A 67 YSAEYSDAK--DADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPI-VDSGFNGIFLVAANPVD---ILTYATWKL 138 (326)
T ss_dssp EECCGGGGG--GCSEEEECCCCC-----CHHHHHHHHHHHHHHHHHHH-HHHTCCSEEEECSSSHH---HHHHHHHHH
T ss_pred EECCHHHhC--CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHCCCeEEEEeCCcHH---HHHHHHHHH
Confidence 113456677 89999855554422 124567777 77889999999999983 344455554
No 136
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A
Probab=84.13 E-value=1.3 Score=45.55 Aligned_cols=105 Identities=16% Similarity=0.127 Sum_probs=64.7
Q ss_pred CceEEEeC-cchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhccccc-C
Q 040403 337 KQKIVVAG-AGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGL-W 414 (623)
Q Consensus 337 d~riv~~G-AGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~-~ 414 (623)
..||+|.| +|..|..++..|.. + |+ ...++++|.+.- ......+.+...+. .... .
T Consensus 8 ~mKI~ViGAaG~VG~~la~~L~~----~-g~--------~~ev~l~Di~~~--------~~~~~dL~~~~~~~-~v~~~~ 65 (326)
T 1smk_A 8 GFKVAILGAAGGIGQPLAMLMKM----N-PL--------VSVLHLYDVVNA--------PGVTADISHMDTGA-VVRGFL 65 (326)
T ss_dssp CEEEEEETTTSTTHHHHHHHHHH----C-TT--------EEEEEEEESSSH--------HHHHHHHHTSCSSC-EEEEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHh----C-CC--------CCEEEEEeCCCc--------HhHHHHhhcccccc-eEEEEe
Confidence 36999999 79999998877654 2 54 246999996421 00001111000000 0000 0
Q ss_pred CCCCHHHHHhhcCCcEEEeccCCC---C-----------CCCHHHHHHcccCCCCCCEEEecCCCC
Q 040403 415 EGASLVEVVQQVKPDVLLGLSAVG---G-----------LFSKEVLEAMRGSTSTRPAIFAMSNPT 466 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLIG~S~~~---g-----------~Ft~evv~~M~a~~~erPIIFaLSNPt 466 (623)
...++.++++ +.|++|=+.+.+ | ..++++++.| .+++.+.+|+--|||.
T Consensus 66 ~t~d~~~al~--gaDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i-~~~~p~~~viv~SNPv 128 (326)
T 1smk_A 66 GQQQLEAALT--GMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGI-AKCCPRAIVNLISNPV 128 (326)
T ss_dssp SHHHHHHHHT--TCSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHH-HHHCTTSEEEECCSSH
T ss_pred CCCCHHHHcC--CCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHH-HhhCCCeEEEEECCch
Confidence 1225788888 899998655544 2 2467788888 7778888999999998
No 137
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Probab=84.02 E-value=8.2 Score=39.47 Aligned_cols=116 Identities=21% Similarity=0.189 Sum_probs=79.4
Q ss_pred cCCccccCcc---hhHHHHHHHHHHHHHHh---------------------CCCCCCCCCceEEEeCcchHHHHHHHHHH
Q 040403 302 KYRMFNDDVQ---GTAGVAVAGLLGAVRAQ---------------------GRSMIDFPKQKIVVAGAGSAGLGVLNAAR 357 (623)
Q Consensus 302 ~~~~FNDDiQ---GTaaV~lAgll~A~r~~---------------------g~~~~~l~d~riv~~GAGsAg~GIA~ll~ 357 (623)
.+.+.|---- .+|=-+++.+|+..|-. |.. +.+.+|.|+|.|..|..+|+.+.
T Consensus 88 gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~---l~g~~vgIIG~G~IG~~~A~~l~ 164 (311)
T 2cuk_A 88 GIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLD---LQGLTLGLVGMGRIGQAVAKRAL 164 (311)
T ss_dssp TCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCC---CTTCEEEEECCSHHHHHHHHHHH
T ss_pred CcEEEECCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCccccccccCcC---CCCCEEEEEEECHHHHHHHHHHH
Confidence 4666664322 33444788888876632 233 89999999999999999999887
Q ss_pred HHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEecc--
Q 040403 358 KTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLS-- 435 (623)
Q Consensus 358 ~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S-- 435 (623)
.. |+ +++.+|+.. .. .. + ...+|.|+++ +.|+++=.-
T Consensus 165 ~~-----G~----------~V~~~d~~~----~~--~~------~------------~~~~l~ell~--~aDvV~l~~p~ 203 (311)
T 2cuk_A 165 AF-----GM----------RVVYHARTP----KP--LP------Y------------PFLSLEELLK--EADVVSLHTPL 203 (311)
T ss_dssp HT-----TC----------EEEEECSSC----CS--SS------S------------CBCCHHHHHH--HCSEEEECCCC
T ss_pred HC-----CC----------EEEEECCCC----cc--cc------c------------ccCCHHHHHh--hCCEEEEeCCC
Confidence 53 73 578888742 11 10 1 1235888888 789888642
Q ss_pred --CCCCCCCHHHHHHcccCCCCCCEEEecCCC
Q 040403 436 --AVGGLFSKEVLEAMRGSTSTRPAIFAMSNP 465 (623)
Q Consensus 436 --~~~g~Ft~evv~~M~a~~~erPIIFaLSNP 465 (623)
...+.++++.++.| .+..++.=.|.-
T Consensus 204 ~~~t~~li~~~~l~~m----k~ga~lin~srg 231 (311)
T 2cuk_A 204 TPETHRLLNRERLFAM----KRGAILLNTARG 231 (311)
T ss_dssp CTTTTTCBCHHHHTTS----CTTCEEEECSCG
T ss_pred ChHHHhhcCHHHHhhC----CCCcEEEECCCC
Confidence 23477888888888 667788888873
No 138
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Probab=83.87 E-value=2.8 Score=42.63 Aligned_cols=105 Identities=19% Similarity=0.199 Sum_probs=60.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhh-cccccCCCC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEI-SRQGLWEGA 417 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~-~~~~~~~~~ 417 (623)
||.|+|||..|.++|..+... ++ -.+++++|.+- ++ +......+.+..... .........
T Consensus 2 kI~VIGaG~vG~~la~~la~~-----~~--------g~~V~l~D~~~----~~--~~~~~~~l~~~~~~~~~~~~i~~t~ 62 (310)
T 1guz_A 2 KITVIGAGNVGATTAFRLAEK-----QL--------ARELVLLDVVE----GI--PQGKALDMYESGPVGLFDTKVTGSN 62 (310)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-----TC--------CSEEEEECSSS----SH--HHHHHHHHHTTHHHHTCCCEEEEES
T ss_pred EEEEECCCHHHHHHHHHHHhC-----CC--------CCEEEEEeCCh----hH--HHHHHHhHHhhhhcccCCcEEEECC
Confidence 799999999999999887652 32 25799999851 11 111111111000000 000001124
Q ss_pred CHHHHHhhcCCcEEEeccCCC---CCC-----------CHHHHHHcccCCCCCCEEEecCCCC
Q 040403 418 SLVEVVQQVKPDVLLGLSAVG---GLF-----------SKEVLEAMRGSTSTRPAIFAMSNPT 466 (623)
Q Consensus 418 ~L~e~V~~vkptvLIG~S~~~---g~F-----------t~evv~~M~a~~~erPIIFaLSNPt 466 (623)
++.+ ++ +.|++|=+.+.+ |-. -+++.+.| .++++.-+|+-+|||.
T Consensus 63 d~~~-l~--~aDvViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i-~~~~~~~~viv~tNP~ 121 (310)
T 1guz_A 63 DYAD-TA--NSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNI-MKHSKNPIIIVVSNPL 121 (310)
T ss_dssp CGGG-GT--TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHH-HHHCSSCEEEECCSSH
T ss_pred CHHH-HC--CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHhCCCcEEEEEcCch
Confidence 5655 66 789887544332 321 15777777 6778888888899997
No 139
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Probab=83.87 E-value=4.6 Score=40.84 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=28.2
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
-.||.|+|+|..|.++|..|... |. ++++++|++
T Consensus 24 ~~~I~iIG~G~mG~~~A~~L~~~-----G~---------~~V~~~dr~ 57 (312)
T 3qsg_A 24 AMKLGFIGFGEAASAIASGLRQA-----GA---------IDMAAYDAA 57 (312)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHH-----SC---------CEEEEECSS
T ss_pred CCEEEEECccHHHHHHHHHHHHC-----CC---------CeEEEEcCC
Confidence 46899999999999999999875 73 368888884
No 140
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}
Probab=83.86 E-value=8.2 Score=40.07 Aligned_cols=122 Identities=13% Similarity=0.113 Sum_probs=82.3
Q ss_pred ccCCccccCc---chhHHHHHHHHHHHHHH------------------hCCCCCCCCCceEEEeCcchHHHHHHHHHHHH
Q 040403 301 YKYRMFNDDV---QGTAGVAVAGLLGAVRA------------------QGRSMIDFPKQKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 301 ~~~~~FNDDi---QGTaaV~lAgll~A~r~------------------~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~ 359 (623)
..+++.|--- +.+|=-+++.+|+..|- .+.. |.+.+|.|+|.|..|..+|+.+...
T Consensus 111 ~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~---l~g~tvgIIGlG~IG~~vA~~l~~~ 187 (335)
T 2g76_A 111 KGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTE---LNGKTLGILGLGRIGREVATRMQSF 187 (335)
T ss_dssp HTCEEECCSSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCTGGGCBCC---CTTCEEEEECCSHHHHHHHHHHHTT
T ss_pred CCeEEEECCCccchHHHHHHHHHHHHHHhchHHHHHHHHcCCCCccCCCCcC---CCcCEEEEEeECHHHHHHHHHHHHC
Confidence 3577777532 23444578888887764 2345 9999999999999999999988653
Q ss_pred HHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEecc----
Q 040403 360 MARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLS---- 435 (623)
Q Consensus 360 m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S---- 435 (623)
|+ +++.+|+.. .. ..+.. . .-...+|.|+++ +.|+++=+-
T Consensus 188 -----G~----------~V~~~d~~~---------~~---~~~~~--~-----g~~~~~l~ell~--~aDvV~l~~P~t~ 231 (335)
T 2g76_A 188 -----GM----------KTIGYDPII---------SP---EVSAS--F-----GVQQLPLEEIWP--LCDFITVHTPLLP 231 (335)
T ss_dssp -----TC----------EEEEECSSS---------CH---HHHHH--T-----TCEECCHHHHGG--GCSEEEECCCCCT
T ss_pred -----CC----------EEEEECCCc---------ch---hhhhh--c-----CceeCCHHHHHh--cCCEEEEecCCCH
Confidence 73 578888641 11 12221 0 111247999998 789988542
Q ss_pred CCCCCCCHHHHHHcccCCCCCCEEEecCCC
Q 040403 436 AVGGLFSKEVLEAMRGSTSTRPAIFAMSNP 465 (623)
Q Consensus 436 ~~~g~Ft~evv~~M~a~~~erPIIFaLSNP 465 (623)
...+.|+++.++.| .+..++.=.|.-
T Consensus 232 ~t~~li~~~~l~~m----k~gailIN~arg 257 (335)
T 2g76_A 232 STTGLLNDNTFAQC----KKGVRVVNCARG 257 (335)
T ss_dssp TTTTSBCHHHHTTS----CTTEEEEECSCT
T ss_pred HHHHhhCHHHHhhC----CCCcEEEECCCc
Confidence 13477889999999 567788877773
No 141
>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}
Probab=83.71 E-value=18 Score=36.58 Aligned_cols=105 Identities=18% Similarity=0.248 Sum_probs=62.9
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLW 414 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~ 414 (623)
....+|.|+|+|..|..++..+... .|. ++++++|+. .+..+.|++.-.. . ..
T Consensus 133 ~~~~~igiIG~G~~g~~~a~~l~~~----~g~---------~~V~v~dr~----------~~~~~~l~~~~~~--~--~~ 185 (312)
T 2i99_A 133 PSSEVLCILGAGVQAYSHYEIFTEQ----FSF---------KEVRIWNRT----------KENAEKFADTVQG--E--VR 185 (312)
T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHH----CCC---------SEEEEECSS----------HHHHHHHHHHSSS--C--CE
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHh----CCC---------cEEEEEcCC----------HHHHHHHHHHhhC--C--eE
Confidence 3578999999999999998887653 243 568888873 1223345432100 0 12
Q ss_pred CCCCHHHHHhhcCCcEEEeccCCCCCCCHHHH--HHcccCCCCCCEEEecCC--CCCCCCCCHHHHhc
Q 040403 415 EGASLVEVVQQVKPDVLLGLSAVGGLFSKEVL--EAMRGSTSTRPAIFAMSN--PTNNAECTPEEAFS 478 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv--~~M~a~~~erPIIFaLSN--Pt~~~E~tpeda~~ 478 (623)
...++.|+++ ++|++|=+... +++++ +.+ .+.-+|+.+|+ |. .-|+.+ ++.+
T Consensus 186 ~~~~~~e~v~--~aDiVi~atp~----~~~v~~~~~l----~~g~~vi~~g~~~p~-~~el~~-~~~~ 241 (312)
T 2i99_A 186 VCSSVQEAVA--GADVIITVTLA----TEPILFGEWV----KPGAHINAVGASRPD-WRELDD-ELMK 241 (312)
T ss_dssp ECSSHHHHHT--TCSEEEECCCC----SSCCBCGGGS----CTTCEEEECCCCSTT-CCSBCH-HHHH
T ss_pred EeCCHHHHHh--cCCEEEEEeCC----CCcccCHHHc----CCCcEEEeCCCCCCC-ceeccH-HHHh
Confidence 3467999998 78998855421 13333 233 44568888753 53 356554 3433
No 142
>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A
Probab=83.53 E-value=0.56 Score=53.05 Aligned_cols=37 Identities=27% Similarity=0.293 Sum_probs=33.3
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
|++.||+|+|||..|.-+|+.|+.+ |+ ++|.++|.+=
T Consensus 324 L~~arVLIVGaGGLGs~vA~~La~a-----GV---------G~ItLvD~D~ 360 (615)
T 4gsl_A 324 IKNTKVLLLGAGTLGCYVSRALIAW-----GV---------RKITFVDNGT 360 (615)
T ss_dssp HHTCEEEEECCSHHHHHHHHHHHHT-----TC---------CEEEEECCCB
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHc-----CC---------CEEEEEcCCC
Confidence 7788999999999999999999986 96 7899999873
No 143
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*
Probab=83.52 E-value=3.3 Score=42.20 Aligned_cols=105 Identities=14% Similarity=0.096 Sum_probs=61.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhh-cccccCCC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEI-SRQGLWEG 416 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~-~~~~~~~~ 416 (623)
.||.|+|||..|.++|..+... |+ .+ ++++|.+- ++ +......+.+..... ........
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~-----g~--------~~-v~L~Di~~----~~--~~g~~~dl~~~~~~~~~~~~i~~t 62 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAK-----EL--------GD-IVLLDIVE----GV--PQGKALDLYEASPIEGFDVRVTGT 62 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----TC--------SE-EEEECSSS----SH--HHHHHHHHHTTHHHHTCCCCEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHC-----CC--------Ce-EEEEeCCc----cH--HHHHHHhHHHhHhhcCCCeEEEEC
Confidence 4899999999999999987653 63 12 99999751 11 111111111000000 00000112
Q ss_pred CCHHHHHhhcCCcEEEeccCCCCC--------------CCHHHHHHcccCCCCCCEEEecCCCC
Q 040403 417 ASLVEVVQQVKPDVLLGLSAVGGL--------------FSKEVLEAMRGSTSTRPAIFAMSNPT 466 (623)
Q Consensus 417 ~~L~e~V~~vkptvLIG~S~~~g~--------------Ft~evv~~M~a~~~erPIIFaLSNPt 466 (623)
.++ ++++ +.|++|=+.+.|.. .-+++.+.+ .++++.-+|+-.|||.
T Consensus 63 ~d~-~a~~--~aD~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i-~~~~p~a~vi~~tNPv 122 (309)
T 1ur5_A 63 NNY-ADTA--NSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQA-APLSPNAVIIMVNNPL 122 (309)
T ss_dssp SCG-GGGT--TCSEEEECCCC--------CHHHHHHHHHHHHHHHHH-GGGCTTCEEEECCSSH
T ss_pred CCH-HHHC--CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HhhCCCeEEEEcCCch
Confidence 456 6777 89999855544421 224788888 7788888887789998
No 144
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=83.49 E-value=2.4 Score=42.78 Aligned_cols=35 Identities=17% Similarity=0.093 Sum_probs=28.5
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.+-.||.|+|+|..|.++|..|... |. +++++|++
T Consensus 19 ~~m~~I~iIG~G~mG~~~A~~l~~~-----G~----------~V~~~dr~ 53 (310)
T 3doj_A 19 SHMMEVGFLGLGIMGKAMSMNLLKN-----GF----------KVTVWNRT 53 (310)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHHHT-----TC----------EEEEECSS
T ss_pred ccCCEEEEECccHHHHHHHHHHHHC-----CC----------eEEEEeCC
Confidence 3457999999999999999999874 73 57778874
No 145
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*
Probab=83.42 E-value=4.4 Score=41.95 Aligned_cols=123 Identities=17% Similarity=0.162 Sum_probs=82.1
Q ss_pred cCCccccCc---chhHHHHHHHHHHHHHHh--------------------CCCCCCCCCceEEEeCcchHHHHHHHHHHH
Q 040403 302 KYRMFNDDV---QGTAGVAVAGLLGAVRAQ--------------------GRSMIDFPKQKIVVAGAGSAGLGVLNAARK 358 (623)
Q Consensus 302 ~~~~FNDDi---QGTaaV~lAgll~A~r~~--------------------g~~~~~l~d~riv~~GAGsAg~GIA~ll~~ 358 (623)
.+.+.|--- +.+|=-+++-+|+..|-. |.. |.+.+|.|+|.|..|..+|+.+..
T Consensus 90 gI~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~---l~g~tvGIIG~G~IG~~vA~~l~~ 166 (330)
T 4e5n_A 90 GVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTG---LDNATVGFLGMGAIGLAMADRLQG 166 (330)
T ss_dssp TCEEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCSCCCCCC---STTCEEEEECCSHHHHHHHHHTTT
T ss_pred CcEEEeCCCCCchHHHHHHHHHHHHHHhChHHHHHHHHhCCccccCccccCCc---cCCCEEEEEeeCHHHHHHHHHHHH
Confidence 466555422 234555788888776631 233 899999999999999999988765
Q ss_pred HHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEecc---
Q 040403 359 TMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLS--- 435 (623)
Q Consensus 359 ~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S--- 435 (623)
. |+ +++.+|+... . ...+... .-...+|.|+++ +.|+++=.-
T Consensus 167 ~-----G~----------~V~~~d~~~~--------~---~~~~~~~-------g~~~~~l~ell~--~aDvV~l~~P~t 211 (330)
T 4e5n_A 167 W-----GA----------TLQYHEAKAL--------D---TQTEQRL-------GLRQVACSELFA--SSDFILLALPLN 211 (330)
T ss_dssp S-----CC----------EEEEECSSCC--------C---HHHHHHH-------TEEECCHHHHHH--HCSEEEECCCCS
T ss_pred C-----CC----------EEEEECCCCC--------c---HhHHHhc-------CceeCCHHHHHh--hCCEEEEcCCCC
Confidence 3 74 5788887521 1 1122110 112347999998 788888542
Q ss_pred -CCCCCCCHHHHHHcccCCCCCCEEEecCCCC
Q 040403 436 -AVGGLFSKEVLEAMRGSTSTRPAIFAMSNPT 466 (623)
Q Consensus 436 -~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt 466 (623)
...+.++++.++.| .+..+|.=.|+-.
T Consensus 212 ~~t~~li~~~~l~~m----k~gailIN~arg~ 239 (330)
T 4e5n_A 212 ADTLHLVNAELLALV----RPGALLVNPCRGS 239 (330)
T ss_dssp TTTTTCBCHHHHTTS----CTTEEEEECSCGG
T ss_pred HHHHHHhCHHHHhhC----CCCcEEEECCCCc
Confidence 23478999999999 6778888888743
No 146
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=83.41 E-value=7.2 Score=40.51 Aligned_cols=131 Identities=13% Similarity=0.174 Sum_probs=89.9
Q ss_pred HHHHHHHHHhC--Cce---eeecccCCCchHHHHHHHHhc--cCCcccc--------CcchhHHHHHHHHHHHHHHhCCC
Q 040403 267 DEFMEAIFTRW--PNV---IVQFEDFQSKWAFKLLQRYRY--KYRMFND--------DVQGTAGVAVAGLLGAVRAQGRS 331 (623)
Q Consensus 267 defv~av~~~~--P~~---lIqfEDf~~~nAf~lL~ryr~--~~~~FND--------DiQGTaaV~lAgll~A~r~~g~~ 331 (623)
+|+++.+.++- |++ ++|+==.+.-+..++++.-.- .+=.||. ...+..-+|-.|++--++-.+.+
T Consensus 97 ~ell~~I~~LN~D~~V~GIlVQlPLP~hid~~~i~~~I~p~KDVDG~hp~N~G~L~~g~~~~~PcTp~gv~~lL~~~~i~ 176 (303)
T 4b4u_A 97 EQLLAEIEKLNANPDVHGILLQHPVPAQIDERACFDAISLAKDVDGVTCLGFGRMAMGEAAYGSATPAGIMTILKENNIE 176 (303)
T ss_dssp HHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHHSCGGGCTTCCCHHHHHHHHTTCCCCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhcCCCCccEEEEeCCCccccChHHHHhccCcccccCccCcchHHHhcCCCCcccCccHHHHHHHHHHHCCC
Confidence 67777777665 553 777655555556666655331 1222211 12234456778999999999999
Q ss_pred CCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcc
Q 040403 332 MIDFPKQKIVVAGAG-SAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISR 410 (623)
Q Consensus 332 ~~~l~d~riv~~GAG-sAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~ 410 (623)
|+..++||+|.+ --|.-+|.||... |. .+.+|.++
T Consensus 177 ---l~Gk~vvViGRS~iVGkPla~LL~~~-----~A----------TVTi~Hs~-------------------------- 212 (303)
T 4b4u_A 177 ---IAGKHAVVVGRSAILGKPMAMMLLQA-----NA----------TVTICHSR-------------------------- 212 (303)
T ss_dssp ---CTTCEEEEECCCTTTHHHHHHHHHHT-----TC----------EEEEECTT--------------------------
T ss_pred ---CCCCEEEEEeccccccchHHHHHHhc-----CC----------EEEEecCC--------------------------
Confidence 999999999975 4677788777652 53 35555442
Q ss_pred cccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHH
Q 040403 411 QGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEA 448 (623)
Q Consensus 411 ~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 448 (623)
..+|.+.++ ++|+||...|.++.++.++|+.
T Consensus 213 -----T~dl~~~~~--~ADIvV~A~G~p~~i~~d~vk~ 243 (303)
T 4b4u_A 213 -----TQNLPELVK--QADIIVGAVGKAELIQKDWIKQ 243 (303)
T ss_dssp -----CSSHHHHHH--TCSEEEECSCSTTCBCGGGSCT
T ss_pred -----CCCHHHHhh--cCCeEEeccCCCCccccccccC
Confidence 234777888 8999999999999999988764
No 147
>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6
Probab=83.37 E-value=2.1 Score=46.45 Aligned_cols=102 Identities=14% Similarity=0.171 Sum_probs=58.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhh-cccccCCCC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEI-SRQGLWEGA 417 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~-~~~~~~~~~ 417 (623)
||.|+|+|..|..+|..|... |. +++++|+.. +....+++..... .+-......
T Consensus 3 kIgVIG~G~mG~~lA~~La~~-----G~----------~V~v~dr~~----------~~~~~l~~~~g~~~~~~~i~~~~ 57 (478)
T 1pgj_A 3 DVGVVGLGVMGANLALNIAEK-----GF----------KVAVFNRTY----------SKSEEFMKANASAPFAGNLKAFE 57 (478)
T ss_dssp SEEEECCSHHHHHHHHHHHHT-----TC----------CEEEECSSH----------HHHHHHHHHTTTSTTGGGEEECS
T ss_pred EEEEEChHHHHHHHHHHHHHC-----CC----------EEEEEeCCH----------HHHHHHHHhcCCCCCCCCeEEEC
Confidence 799999999999999988764 73 477787631 1112222110000 000012345
Q ss_pred CHHHHHhhc-CCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCC
Q 040403 418 SLVEVVQQV-KPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPT 466 (623)
Q Consensus 418 ~L~e~V~~v-kptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt 466 (623)
++.|+++.. ++|++| ++...+...+++++.++....+.-||.-+||-.
T Consensus 58 ~~~e~v~~l~~aDvVi-laVp~~~~v~~vl~~l~~~l~~g~iIId~sng~ 106 (478)
T 1pgj_A 58 TMEAFAASLKKPRKAL-ILVQAGAATDSTIEQLKKVFEKGDILVDTGNAH 106 (478)
T ss_dssp CHHHHHHHBCSSCEEE-ECCCCSHHHHHHHHHHHHHCCTTCEEEECCCCC
T ss_pred CHHHHHhcccCCCEEE-EecCChHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 788888743 488877 333344445777766522224456788888864
No 148
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=83.29 E-value=2.3 Score=45.41 Aligned_cols=120 Identities=20% Similarity=0.238 Sum_probs=67.7
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLW 414 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~ 414 (623)
++.+||+|+|.|.+|+++|++|.+. | -++...|.+-.- .++....+.+..-++. .
T Consensus 7 ~~~k~v~viG~G~sG~s~A~~l~~~-----G----------~~V~~~D~~~~~------~~~~~~~L~~~gi~~~----~ 61 (451)
T 3lk7_A 7 FENKKVLVLGLARSGEAAARLLAKL-----G----------AIVTVNDGKPFD------ENPTAQSLLEEGIKVV----C 61 (451)
T ss_dssp TTTCEEEEECCTTTHHHHHHHHHHT-----T----------CEEEEEESSCGG------GCHHHHHHHHTTCEEE----E
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHhC-----C----------CEEEEEeCCccc------CChHHHHHHhCCCEEE----E
Confidence 7789999999999999998888764 8 467888875210 1122222221100100 0
Q ss_pred CCCCHHHHHhhcC-CcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCC
Q 040403 415 EGASLVEVVQQVK-PDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGSPFK 493 (623)
Q Consensus 415 ~~~~L~e~V~~vk-ptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~Grai~AtGsPF~ 493 (623)
+. .-.+.++ + +|.+|=.++.+- =++++.++. . ..-|||= | +|-++...+++.|-.|||
T Consensus 62 g~-~~~~~~~--~~~d~vv~spgi~~-~~p~~~~a~-~--~gi~v~~---------~--~e~~~~~~~~~~IaVTGT--- 120 (451)
T 3lk7_A 62 GS-HPLELLD--EDFCYMIKNPGIPY-NNPMVKKAL-E--KQIPVLT---------E--VELAYLVSESQLIGITGS--- 120 (451)
T ss_dssp SC-CCGGGGG--SCEEEEEECTTSCT-TSHHHHHHH-H--TTCCEEC---------H--HHHHHHHCCSEEEEEECS---
T ss_pred CC-ChHHhhc--CCCCEEEECCcCCC-CChhHHHHH-H--CCCcEEe---------H--HHHHHHhcCCCEEEEECC---
Confidence 00 0111222 4 788875444432 356666654 2 3345541 2 334555567788999998
Q ss_pred ccccCCCeeccC
Q 040403 494 DVDLGNGHIGHC 505 (623)
Q Consensus 494 pv~~~~G~~~~p 505 (623)
||||-.-
T Consensus 121 -----nGKTTTt 127 (451)
T 3lk7_A 121 -----NGKTTTT 127 (451)
T ss_dssp -----SCHHHHH
T ss_pred -----CCHHHHH
Confidence 8987543
No 149
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A
Probab=83.21 E-value=1.4 Score=43.42 Aligned_cols=96 Identities=11% Similarity=0.072 Sum_probs=57.4
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEG 416 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~ 416 (623)
-.||.|+|+|..|..+|..|... |.. .+++++|++. +....+.+ . ... ....
T Consensus 6 ~~~I~iIG~G~mG~~~a~~l~~~-----g~~--------~~V~~~d~~~----------~~~~~~~~-~-g~~---~~~~ 57 (290)
T 3b1f_A 6 EKTIYIAGLGLIGASLALGIKRD-----HPH--------YKIVGYNRSD----------RSRDIALE-R-GIV---DEAT 57 (290)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH-----CTT--------SEEEEECSSH----------HHHHHHHH-T-TSC---SEEE
T ss_pred cceEEEEeeCHHHHHHHHHHHhC-----CCC--------cEEEEEcCCH----------HHHHHHHH-c-CCc---cccc
Confidence 35899999999999999988764 531 3688888741 11111211 0 000 0112
Q ss_pred CCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCC--CCCCEEEecCCC
Q 040403 417 ASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGST--STRPAIFAMSNP 465 (623)
Q Consensus 417 ~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~--~erPIIFaLSNP 465 (623)
.++.++++ ++|++| ++..+... +++++.+ ..+ .+..||.-+||-
T Consensus 58 ~~~~~~~~--~aDvVi-lavp~~~~-~~v~~~l-~~~~l~~~~ivi~~~~~ 103 (290)
T 3b1f_A 58 ADFKVFAA--LADVII-LAVPIKKT-IDFIKIL-ADLDLKEDVIITDAGST 103 (290)
T ss_dssp SCTTTTGG--GCSEEE-ECSCHHHH-HHHHHHH-HTSCCCTTCEEECCCSC
T ss_pred CCHHHhhc--CCCEEE-EcCCHHHH-HHHHHHH-HhcCCCCCCEEEECCCC
Confidence 45666776 688877 44333333 8888887 443 456677777764
No 150
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Probab=83.19 E-value=4.2 Score=40.90 Aligned_cols=98 Identities=13% Similarity=0.101 Sum_probs=54.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHh-hhhcc------
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKV-NEISR------ 410 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~-~~~~~------ 410 (623)
.||.|+|+|..|..+|..|... | .+++++|++. +....+.+.. ..+..
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~-----g----------~~V~~~~r~~----------~~~~~~~~~~~~~~~~~~~~~~ 59 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALK-----G----------QSVLAWDIDA----------QRIKEIQDRGAIIAEGPGLAGT 59 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----T----------CEEEEECSCH----------HHHHHHHHHTSEEEESSSCCEE
T ss_pred CeEEEECCCHHHHHHHHHHHhC-----C----------CEEEEEeCCH----------HHHHHHHhcCCeEEeccccccc
Confidence 5899999999999999888653 6 2477887741 1111121110 00000
Q ss_pred ccc-CCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCC
Q 040403 411 QGL-WEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSN 464 (623)
Q Consensus 411 ~~~-~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSN 464 (623)
+.. ....++.++++ ++|++|=+. +....+++++.++....+..+|+.+.|
T Consensus 60 ~~~~~~~~~~~~~~~--~~D~vi~~v--~~~~~~~~~~~l~~~l~~~~~vv~~~~ 110 (359)
T 1bg6_A 60 AHPDLLTSDIGLAVK--DADVILIVV--PAIHHASIAANIASYISEGQLIILNPG 110 (359)
T ss_dssp ECCSEEESCHHHHHT--TCSEEEECS--CGGGHHHHHHHHGGGCCTTCEEEESSC
T ss_pred cccceecCCHHHHHh--cCCEEEEeC--CchHHHHHHHHHHHhCCCCCEEEEcCC
Confidence 000 12346777776 678776332 222347788777322344556666644
No 151
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=83.13 E-value=0.79 Score=45.36 Aligned_cols=37 Identities=14% Similarity=0.312 Sum_probs=32.3
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
|++.||+|+|+|..|.-+|..|+.+ |+ ++|.++|.+-
T Consensus 29 l~~~~VlVvG~Gg~G~~va~~La~~-----Gv---------~~i~lvD~d~ 65 (249)
T 1jw9_B 29 LKDSRVLIVGLGGLGCAASQYLASA-----GV---------GNLTLLDFDT 65 (249)
T ss_dssp HHHCEEEEECCSHHHHHHHHHHHHH-----TC---------SEEEEECCCB
T ss_pred HhCCeEEEEeeCHHHHHHHHHHHHc-----CC---------CeEEEEcCCC
Confidence 6678999999999999999999886 85 6799999973
No 152
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=82.93 E-value=1.4 Score=45.25 Aligned_cols=35 Identities=17% Similarity=0.352 Sum_probs=27.8
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
..||||+|+|.||+..|..|... |-+ -+|.++|++
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~-----~~~--------~~Vtlie~~ 36 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLA-----DPS--------IEVTLIEPN 36 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH-----CTT--------SEEEEECSC
T ss_pred cCEEEEECCcHHHHHHHHHHHhc-----CcC--------CeEEEEeCC
Confidence 46999999999999999988764 521 368888875
No 153
>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A
Probab=82.77 E-value=14 Score=39.70 Aligned_cols=114 Identities=19% Similarity=0.256 Sum_probs=77.6
Q ss_pred CchhhhHhHHHHHHHHHHhC-CceeeecccCCCchHHH---HHHHHhc---cC-C---ccccC----------cchhHHH
Q 040403 258 DGDEYVSVIDEFMEAIFTRW-PNVIVQFEDFQSKWAFK---LLQRYRY---KY-R---MFNDD----------VQGTAGV 316 (623)
Q Consensus 258 ~g~~Y~~~vdefv~av~~~~-P~~lIqfEDf~~~nAf~---lL~ryr~---~~-~---~FNDD----------iQGTaaV 316 (623)
+.+|...|...|+.++...- |+..|-=+|++.. ... +.+.|.. .. + ++--+ -.-||-=
T Consensus 115 s~~e~~~~~r~f~~~l~~~~g~~~dv~a~D~gt~-~~~m~~~~~~y~~~~~~~~~~~~~~tGk~~~~GGs~~~~~aTg~G 193 (419)
T 1gtm_A 115 SDREKERLARGYIRAIYDVISPYEDIPAPDVYTN-PQIMAWMMDEYETISRRKTPAFGIITGKPLSIGGSLGRIEATARG 193 (419)
T ss_dssp CHHHHHHHHHHHHHHHGGGCBTTTEECCBCTTCC-HHHHHHHHHHHHHHHTTSSCGGGGCSSCCGGGTCCTTTTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCcEEeCCCCCCC-HHHHHHHHHHHHHhhCCCCCccceEecCcchhCCCCCCCcchhhH
Confidence 44567788999999998876 8877888999873 222 3355533 21 2 33222 1236655
Q ss_pred HHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHH-HHHHhcCCCcchhhhccCeEEEEccCCccc
Q 040403 317 AVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARK-TMARMLGNNESAFDSARSQFWVVDAKGLIT 388 (623)
Q Consensus 317 ~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~-~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~ 388 (623)
+.-++..+++..|.. +|++.+|.|+|.|..|..+|+++.. . |+ +-+.+-|+.|-++
T Consensus 194 v~~~~~~~~~~~G~~--~l~gktvgI~G~G~VG~~vA~~l~~~~-----G~---------kVv~~sD~~g~~~ 250 (419)
T 1gtm_A 194 ASYTIREAAKVLGWD--TLKGKTIAIQGYGNAGYYLAKIMSEDF-----GM---------KVVAVSDSKGGIY 250 (419)
T ss_dssp HHHHHHHHHHHTTCS--CSTTCEEEEECCSHHHHHHHHHHHHTT-----CC---------EEEEEECSSCEEE
T ss_pred HHHHHHHHHHHhCCc--ccCCCEEEEEcCCHHHHHHHHHHHHhc-----CC---------EEEEEeCCCcccc
Confidence 666777788887764 2899999999999999999998876 4 74 2244448877544
No 154
>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5
Probab=82.72 E-value=1.6 Score=44.03 Aligned_cols=48 Identities=15% Similarity=0.288 Sum_probs=35.0
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 319 AGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 319 Agll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.|+..+++-.|.. .+.+++|+|||.+|.+++..|... |. ++|+++++.
T Consensus 105 ~G~~~~l~~~~~~----~~~~vlvlGaGgaarav~~~L~~~-----G~---------~~i~v~nRt 152 (271)
T 1npy_A 105 IAIVKLIEKYHLN----KNAKVIVHGSGGMAKAVVAAFKNS-----GF---------EKLKIYARN 152 (271)
T ss_dssp HHHHHHHHHTTCC----TTSCEEEECSSTTHHHHHHHHHHT-----TC---------CCEEEECSC
T ss_pred HHHHHHHHHhCCC----CCCEEEEECCcHHHHHHHHHHHHC-----CC---------CEEEEEeCC
Confidence 3455566555543 467999999999999998887653 75 568888874
No 155
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}
Probab=82.35 E-value=1.8 Score=42.93 Aligned_cols=32 Identities=22% Similarity=0.258 Sum_probs=26.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.||.|+|+|..|..+|..+... | -+++++|++
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~-----G----------~~V~~~dr~ 33 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKA-----G----------CSVTIWNRS 33 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----T----------CEEEEECSS
T ss_pred CEEEEEeecHHHHHHHHHHHHC-----C----------CeEEEEcCC
Confidence 5899999999999999998774 7 357777874
No 156
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure, structural genomics, NPPSFA; HET: MSE NAD; 2.12A {Aquifex aeolicus VF5} PDB: 3kb6_A*
Probab=81.98 E-value=9.5 Score=39.56 Aligned_cols=162 Identities=14% Similarity=0.091 Sum_probs=98.0
Q ss_pred CCce-eeecccCCCchHHHHHHHHhccCCcccc-Cc--chhHHHHHHHHHHHHHH-------------------hCCCCC
Q 040403 277 WPNV-IVQFEDFQSKWAFKLLQRYRYKYRMFND-DV--QGTAGVAVAGLLGAVRA-------------------QGRSMI 333 (623)
Q Consensus 277 ~P~~-lIqfEDf~~~nAf~lL~ryr~~~~~FND-Di--QGTaaV~lAgll~A~r~-------------------~g~~~~ 333 (623)
.|+. .|+.--.+..| ..+-.--+..+.+.|- +. ..+|=-+++-+|+..|- .|..
T Consensus 62 ~~~Lk~I~~~~~G~d~-id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~-- 138 (334)
T 2pi1_A 62 MPRLKLIHTRSVGFDH-IDLDYCKKKGILVTHIPAYSPESVAEHTFAMILTLVKRLKRIEDRVKKLNFSQDSEILARE-- 138 (334)
T ss_dssp CTTCCEEEESSSCCTT-BCHHHHHHHTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCGGGCBCC--
T ss_pred CCCCeEEEECCccccc-cCHHHHHHCCeEEEECCCcCcHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCccccCcccee--
Confidence 4553 45544444433 1221112234666664 22 23455578888887752 2445
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhccccc
Q 040403 334 DFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGL 413 (623)
Q Consensus 334 ~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~ 413 (623)
|.+.+|.|+|.|..|-.+|+.+... |+ +++.+|+.. .. ..+. . .
T Consensus 139 -l~g~tvgIiG~G~IG~~vA~~l~~~-----G~----------~V~~~d~~~---------~~---~~~~---~-----g 182 (334)
T 2pi1_A 139 -LNRLTLGVIGTGRIGSRVAMYGLAF-----GM----------KVLCYDVVK---------RE---DLKE---K-----G 182 (334)
T ss_dssp -GGGSEEEEECCSHHHHHHHHHHHHT-----TC----------EEEEECSSC---------CH---HHHH---T-----T
T ss_pred -ccCceEEEECcCHHHHHHHHHHHHC-----cC----------EEEEECCCc---------ch---hhHh---c-----C
Confidence 8999999999999999999998764 74 578888741 11 1111 1 1
Q ss_pred CCCCCHHHHHhhcCCcEEEecc----CCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccCCcEE
Q 040403 414 WEGASLVEVVQQVKPDVLLGLS----AVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNII 485 (623)
Q Consensus 414 ~~~~~L~e~V~~vkptvLIG~S----~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~Grai 485 (623)
....+|.|+++ +.|+++=.- ...+.|+++.++.| .+..|+.=.|.-..--|-.-.+|++ +|+.-
T Consensus 183 ~~~~~l~ell~--~aDvV~l~~P~t~~t~~li~~~~l~~m----k~gailIN~aRg~~vd~~aL~~aL~--~g~i~ 250 (334)
T 2pi1_A 183 CVYTSLDELLK--ESDVISLHVPYTKETHHMINEERISLM----KDGVYLINTARGKVVDTDALYRAYQ--RGKFS 250 (334)
T ss_dssp CEECCHHHHHH--HCSEEEECCCCCTTTTTCBCHHHHHHS----CTTEEEEECSCGGGBCHHHHHHHHH--TTCEE
T ss_pred ceecCHHHHHh--hCCEEEEeCCCChHHHHhhCHHHHhhC----CCCcEEEECCCCcccCHHHHHHHHH--hCCce
Confidence 12345999998 789888531 24578999999999 6777888777644223333334443 35543
No 157
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=81.94 E-value=0.81 Score=45.38 Aligned_cols=36 Identities=14% Similarity=0.246 Sum_probs=31.9
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
|++.||+|+|+|..|.-+|..|+.+ |+ ++|.++|.+
T Consensus 26 l~~~~VlvvG~GglG~~va~~La~~-----Gv---------g~i~lvD~d 61 (251)
T 1zud_1 26 LLDSQVLIIGLGGLGTPAALYLAGA-----GV---------GTLVLADDD 61 (251)
T ss_dssp HHTCEEEEECCSTTHHHHHHHHHHT-----TC---------SEEEEECCC
T ss_pred HhcCcEEEEccCHHHHHHHHHHHHc-----CC---------CeEEEEeCC
Confidence 6778999999999999999988875 96 679999987
No 158
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}
Probab=81.81 E-value=11 Score=39.36 Aligned_cols=195 Identities=18% Similarity=0.125 Sum_probs=111.9
Q ss_pred ccCCcccc-Cc-chhHHHHHHHHHHHHHH----------------------------hCCCCCCCCCceEEEeCcchHHH
Q 040403 301 YKYRMFND-DV-QGTAGVAVAGLLGAVRA----------------------------QGRSMIDFPKQKIVVAGAGSAGL 350 (623)
Q Consensus 301 ~~~~~FND-Di-QGTaaV~lAgll~A~r~----------------------------~g~~~~~l~d~riv~~GAGsAg~ 350 (623)
..|++.|. +. ..+|=-+++-+|+..|- .|.. |.+.+|.|+|.|..|.
T Consensus 97 ~gI~V~n~pg~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~~~~~---l~g~tvGIIGlG~IG~ 173 (352)
T 3gg9_A 97 KGVVVLEGKGSPVAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRV---LKGQTLGIFGYGKIGQ 173 (352)
T ss_dssp HTCEEECCCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHTTCTTCCCCCCTTSCTTTTSBCC---CTTCEEEEECCSHHHH
T ss_pred CCeEEEECCCCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCCCcccccccccccccccCcc---CCCCEEEEEeECHHHH
Confidence 35666662 22 23444578888877663 1334 8999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcE
Q 040403 351 GVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDV 430 (623)
Q Consensus 351 GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptv 430 (623)
.+|+.+... |+ +++.+|+.. +...+.. .. .....+|.|+++ +.|+
T Consensus 174 ~vA~~l~~~-----G~----------~V~~~d~~~------------~~~~~~~-~g-----~~~~~~l~ell~--~aDi 218 (352)
T 3gg9_A 174 LVAGYGRAF-----GM----------NVLVWGREN------------SKERARA-DG-----FAVAESKDALFE--QSDV 218 (352)
T ss_dssp HHHHHHHHT-----TC----------EEEEECSHH------------HHHHHHH-TT-----CEECSSHHHHHH--HCSE
T ss_pred HHHHHHHhC-----CC----------EEEEECCCC------------CHHHHHh-cC-----ceEeCCHHHHHh--hCCE
Confidence 999988764 74 577788641 1111211 01 122348999998 7888
Q ss_pred EEecc----CCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCccccCCCeeccCC
Q 040403 431 LLGLS----AVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGSPFKDVDLGNGHIGHCN 506 (623)
Q Consensus 431 LIG~S----~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~Grai~AtGsPF~pv~~~~G~~~~p~ 506 (623)
++=.- ...+.|+++.++.| .+..++.=.|+-..--|---.+|++- |+.-.|.=-=|++-..+... .--
T Consensus 219 V~l~~Plt~~t~~li~~~~l~~m----k~gailIN~aRg~~vd~~aL~~aL~~--g~i~gA~lDV~~~EPl~~~~--pL~ 290 (352)
T 3gg9_A 219 LSVHLRLNDETRSIITVADLTRM----KPTALFVNTSRAELVEENGMVTALNR--GRPGMAAIDVFETEPILQGH--TLL 290 (352)
T ss_dssp EEECCCCSTTTTTCBCHHHHTTS----CTTCEEEECSCGGGBCTTHHHHHHHH--TSSSEEEECCCSSSCCCSCC--GGG
T ss_pred EEEeccCcHHHHHhhCHHHHhhC----CCCcEEEECCCchhhcHHHHHHHHHh--CCccEEEecccCCCCCCCCC--hhh
Confidence 88532 23578999999999 67788888887443334444455542 44321110001111010000 112
Q ss_pred CCccccchhHHHHHHHHcCCcccCHHHHHHHHHHHHcccC
Q 040403 507 QGNNMYLFPGVGLGTLLSGSRIISDGMLQAAAECLAEYMT 546 (623)
Q Consensus 507 Q~NN~yiFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v~ 546 (623)
+..|+.+-|=+|- ....--+.|...+++-|.....
T Consensus 291 ~~~nvilTPHia~-----~t~e~~~~~~~~~~~ni~~~~~ 325 (352)
T 3gg9_A 291 RMENCICTPHIGY-----VERESYEMYFGIAFQNILDILQ 325 (352)
T ss_dssp GCTTEEECCSCTT-----CBHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCEEECCCCCC-----CCHHHHHHHHHHHHHHHHHHHc
Confidence 3468888887642 1111224556666666666543
No 159
>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*
Probab=81.75 E-value=5.6 Score=42.69 Aligned_cols=71 Identities=21% Similarity=0.350 Sum_probs=48.1
Q ss_pred CceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCC
Q 040403 337 KQKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWE 415 (623)
Q Consensus 337 d~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~ 415 (623)
--||+|+|+ |.+|.|-++.+... |..+ .++..+|.+= +. + . . .
T Consensus 214 ~~kV~ViG~~G~vG~~A~~~a~~l-----Ga~~-------~~V~v~D~~~--~~-~---------------g-----~-~ 257 (394)
T 2qrj_A 214 KPTVLIIGALGRCGSGAIDLLHKV-----GIPD-------ANILKWDIKE--TS-R---------------G-----G-P 257 (394)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHT-----TCCG-------GGEEEECHHH--HT-T---------------C-----S-C
T ss_pred CCeEEEEcCCCHHHHHHHHHHHhC-----CCCc-------CceEEeeccc--cc-c---------------C-----C-c
Confidence 468999999 99999999888764 7521 2466666530 00 0 0 0 0
Q ss_pred CCCHHHHHhhcCCcEEEeccCC----CCCCCHHHHHHc
Q 040403 416 GASLVEVVQQVKPDVLLGLSAV----GGLFSKEVLEAM 449 (623)
Q Consensus 416 ~~~L~e~V~~vkptvLIG~S~~----~g~Ft~evv~~M 449 (623)
+ +.++ ..|++||+--. |-++|+|+|+.|
T Consensus 258 ---~-~~i~--~aDivIn~vlig~~aP~Lvt~e~v~~m 289 (394)
T 2qrj_A 258 ---F-DEIP--QADIFINCIYLSKPIAPFTNMEKLNNP 289 (394)
T ss_dssp ---C-THHH--HSSEEEECCCCCSSCCCSCCHHHHCCT
T ss_pred ---h-hhHh--hCCEEEECcCcCCCCCcccCHHHHhcC
Confidence 1 2234 68999997653 788999999999
No 160
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1
Probab=81.52 E-value=15 Score=37.47 Aligned_cols=120 Identities=18% Similarity=0.152 Sum_probs=80.4
Q ss_pred ccCCcccc-Ccchh--HHHHHHHHHHHHHHh---------C----C-CCCCCCCceEEEeCcchHHHHHHHHHHHHHHHh
Q 040403 301 YKYRMFND-DVQGT--AGVAVAGLLGAVRAQ---------G----R-SMIDFPKQKIVVAGAGSAGLGVLNAARKTMARM 363 (623)
Q Consensus 301 ~~~~~FND-DiQGT--aaV~lAgll~A~r~~---------g----~-~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~ 363 (623)
..+++.|- +.... |=-+++.+|+..|-. | . +...|.+.+|.|+|.|..|..+|+.+...
T Consensus 71 ~gi~v~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~---- 146 (303)
T 1qp8_A 71 PHVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVEIPLIQGEKVAVLGLGEIGTRVGKILAAL---- 146 (303)
T ss_dssp TTSCEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCSCCCCCTTCEEEEESCSTHHHHHHHHHHHT----
T ss_pred cCCEEEECCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCCCCCCCCEEEEEccCHHHHHHHHHHHHC----
Confidence 34666663 33333 334788888877632 1 1 11148999999999999999999988764
Q ss_pred cCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEecc----CCCC
Q 040403 364 LGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLS----AVGG 439 (623)
Q Consensus 364 ~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S----~~~g 439 (623)
|+ +++.+|+..- + . . .....+|.|+++ +.|+++=.- ...+
T Consensus 147 -G~----------~V~~~dr~~~-----~---~----------~-----~~~~~~l~ell~--~aDvV~l~~P~~~~t~~ 190 (303)
T 1qp8_A 147 -GA----------QVRGFSRTPK-----E---G----------P-----WRFTNSLEEALR--EARAAVCALPLNKHTRG 190 (303)
T ss_dssp -TC----------EEEEECSSCC-----C---S----------S-----SCCBSCSHHHHT--TCSEEEECCCCSTTTTT
T ss_pred -CC----------EEEEECCCcc-----c---c----------C-----cccCCCHHHHHh--hCCEEEEeCcCchHHHH
Confidence 74 5788887532 0 0 0 112346888888 789888542 2357
Q ss_pred CCCHHHHHHcccCCCCCCEEEecCC
Q 040403 440 LFSKEVLEAMRGSTSTRPAIFAMSN 464 (623)
Q Consensus 440 ~Ft~evv~~M~a~~~erPIIFaLSN 464 (623)
.|+++.++.| .+..++.=.|.
T Consensus 191 ~i~~~~l~~m----k~gailin~sr 211 (303)
T 1qp8_A 191 LVKYQHLALM----AEDAVFVNVGR 211 (303)
T ss_dssp CBCHHHHTTS----CTTCEEEECSC
T ss_pred HhCHHHHhhC----CCCCEEEECCC
Confidence 7888999999 56778887776
No 161
>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A
Probab=81.29 E-value=5 Score=43.90 Aligned_cols=102 Identities=17% Similarity=0.213 Sum_probs=63.9
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEG 416 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~ 416 (623)
..+|.|+|.|..|..+|..|... |. +++++|+. .+....+++.... +-.....
T Consensus 4 ~~kIgiIGlG~MG~~lA~~L~~~-----G~----------~V~v~dr~----------~~~~~~l~~~g~~--g~~i~~~ 56 (484)
T 4gwg_A 4 QADIALIGLAVMGQNLILNMNDH-----GF----------VVCAFNRT----------VSKVDDFLANEAK--GTKVVGA 56 (484)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHT-----TC----------CEEEECSS----------THHHHHHHHTTTT--TSSCEEC
T ss_pred CCEEEEEChhHHHHHHHHHHHHC-----CC----------EEEEEeCC----------HHHHHHHHhcccC--CCceecc
Confidence 35899999999999999988874 73 47777873 1222233321000 0001124
Q ss_pred CCHHHHHhhc-CCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCC
Q 040403 417 ASLVEVVQQV-KPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPT 466 (623)
Q Consensus 417 ~~L~e~V~~v-kptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt 466 (623)
.++.|+++.+ +||++| ++-.++..++++++.+.....+..||.-.||-.
T Consensus 57 ~s~~e~v~~l~~aDvVi-l~Vp~~~~v~~vl~~l~~~L~~g~iIId~st~~ 106 (484)
T 4gwg_A 57 QSLKEMVSKLKKPRRII-LLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSE 106 (484)
T ss_dssp SSHHHHHHTBCSSCEEE-ECSCSSHHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred CCHHHHHhhccCCCEEE-EecCChHHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence 6799998753 488777 333344456778877733345677888888854
No 162
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Probab=81.27 E-value=0.85 Score=47.36 Aligned_cols=108 Identities=14% Similarity=0.179 Sum_probs=63.5
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhh-ccccc
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEI-SRQGL 413 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~-~~~~~ 413 (623)
.+..||.|+|||..|.++|..|... |+ ..+.|+|.+- ++ +......+.+..... .+-..
T Consensus 5 m~~~kI~viGaG~vG~~~a~~l~~~-----~~---------~~v~L~Di~~----~~--~~g~~~dl~~~~~~~~~~~~v 64 (324)
T 3gvi_A 5 MARNKIALIGSGMIGGTLAHLAGLK-----EL---------GDVVLFDIAE----GT--PQGKGLDIAESSPVDGFDAKF 64 (324)
T ss_dssp -CCCEEEEECCSHHHHHHHHHHHHT-----TC---------CEEEEECSSS----SH--HHHHHHHHHHHHHHHTCCCCE
T ss_pred CcCCEEEEECCCHHHHHHHHHHHhC-----CC---------CeEEEEeCCc----hh--HHHHHHHHhchhhhcCCCCEE
Confidence 5667999999999999999888763 64 1599999842 11 110111111100000 00000
Q ss_pred CCCCCHHHHHhhcCCcEEEeccCC---CCC-----C------CHHHHHHcccCCCCCCEEEecCCCC
Q 040403 414 WEGASLVEVVQQVKPDVLLGLSAV---GGL-----F------SKEVLEAMRGSTSTRPAIFAMSNPT 466 (623)
Q Consensus 414 ~~~~~L~e~V~~vkptvLIG~S~~---~g~-----F------t~evv~~M~a~~~erPIIFaLSNPt 466 (623)
....+. ++++ +.|++|=+.+. +|. | -+++++.| .++++.-+|+-.|||.
T Consensus 65 ~~t~d~-~a~~--~aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i-~~~~p~a~iivvtNPv 127 (324)
T 3gvi_A 65 TGANDY-AAIE--GADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGI-KKYAPEAFVICITNPL 127 (324)
T ss_dssp EEESSG-GGGT--TCSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHH-HHHCTTCEEEECCSSH
T ss_pred EEeCCH-HHHC--CCCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHH-HHHCCCeEEEecCCCc
Confidence 112344 7777 89988755443 332 1 15677777 7788899999999997
No 163
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1
Probab=80.91 E-value=3 Score=42.80 Aligned_cols=115 Identities=16% Similarity=0.183 Sum_probs=66.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGA 417 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~ 417 (623)
.||.|+|||+.|..+|-+|... |+ ...++++|.+ .++ +......+.+...-..++... ..
T Consensus 8 ~KI~IiGaG~vG~~~a~~l~~~-----~~--------~~ev~L~Di~----~~~--~~g~~~dl~~~~~~~~~~~i~-~~ 67 (318)
T 1y6j_A 8 SKVAIIGAGFVGASAAFTMALR-----QT--------ANELVLIDVF----KEK--AIGEAMDINHGLPFMGQMSLY-AG 67 (318)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT-----TC--------SSEEEEECCC---------CCHHHHHHTTSCCCTTCEEEC---
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC--------CCEEEEEeCC----hHH--HHHHHHHHHHhHHhcCCeEEE-EC
Confidence 5899999999999988876552 54 2579999985 121 221111221100000000001 12
Q ss_pred CHHHHHhhcCCcEEEeccCCCCCC--------------CHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcc
Q 040403 418 SLVEVVQQVKPDVLLGLSAVGGLF--------------SKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSI 479 (623)
Q Consensus 418 ~L~e~V~~vkptvLIG~S~~~g~F--------------t~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~w 479 (623)
+ .++++ +.|++|=+.+.+..- -+++++.| .++++.-+|+=.|||. -.+.+-+++.
T Consensus 68 ~-~~a~~--~aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i-~~~~p~a~viv~tNPv---~~~~~~~~k~ 136 (318)
T 1y6j_A 68 D-YSDVK--DCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNI-MKYYNHGVILVVSNPV---DIITYMIQKW 136 (318)
T ss_dssp C-GGGGT--TCSEEEECCCC------CHHHHHHHHHHHHHHHHHHH-HHHCCSCEEEECSSSH---HHHHHHHHHH
T ss_pred C-HHHhC--CCCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHH-HHhCCCcEEEEecCcH---HHHHHHHHHH
Confidence 2 55666 899988555444211 16888888 7778889998899997 3344445454
No 164
>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}
Probab=80.85 E-value=1.4 Score=48.15 Aligned_cols=32 Identities=16% Similarity=0.298 Sum_probs=26.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.||.|+|+|..|.|||..+..+ |. +++++|++
T Consensus 55 ~kVaVIGaG~MG~~IA~~la~a-----G~----------~V~l~D~~ 86 (460)
T 3k6j_A 55 NSVAIIGGGTMGKAMAICFGLA-----GI----------ETFLVVRN 86 (460)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----TC----------EEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHHC-----CC----------eEEEEECc
Confidence 6899999999999999998875 74 47777763
No 165
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=80.53 E-value=2 Score=38.62 Aligned_cols=35 Identities=31% Similarity=0.394 Sum_probs=28.9
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+...+|+|+|+|..|..+|+.+... | .+++++|++
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~-----g----------~~V~vid~~ 51 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSS-----G----------HSVVVVDKN 51 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHT-----T----------CEEEEEESC
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhC-----C----------CeEEEEECC
Confidence 6778999999999999998888663 6 368888874
No 166
>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}
Probab=80.49 E-value=3 Score=41.75 Aligned_cols=32 Identities=28% Similarity=0.378 Sum_probs=26.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.||.|+|+|..|..+|..+... |. +++++|+.
T Consensus 31 ~~I~iIG~G~mG~~~a~~l~~~-----g~----------~V~~~~~~ 62 (316)
T 2uyy_A 31 KKIGFLGLGLMGSGIVSNLLKM-----GH----------TVTVWNRT 62 (316)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT-----TC----------CEEEECSS
T ss_pred CeEEEEcccHHHHHHHHHHHhC-----CC----------EEEEEeCC
Confidence 6899999999999999988763 63 47778763
No 167
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}
Probab=80.48 E-value=9.9 Score=39.15 Aligned_cols=121 Identities=17% Similarity=0.188 Sum_probs=80.0
Q ss_pred cCCccccCcc---hhHHHHHHHHHHHHHH---------hCC-------CCCCCCCceEEEeCcchHHHHHHHHHHHHHHH
Q 040403 302 KYRMFNDDVQ---GTAGVAVAGLLGAVRA---------QGR-------SMIDFPKQKIVVAGAGSAGLGVLNAARKTMAR 362 (623)
Q Consensus 302 ~~~~FNDDiQ---GTaaV~lAgll~A~r~---------~g~-------~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~ 362 (623)
.+.+.|---. .+|=-+++.+|+..|- .|. ...+|.+.+|.|+|.|..|..+|+.+...
T Consensus 92 gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~--- 168 (331)
T 1xdw_A 92 GFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSKEVRNCTVGVVGLGRIGRVAAQIFHGM--- 168 (331)
T ss_dssp TCCEECCCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCSTTCCCCGGGSEEEEECCSHHHHHHHHHHHHT---
T ss_pred CcEEEeCCCCCcHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCccccCcCccCCCCCEEEEECcCHHHHHHHHHHHHC---
Confidence 4666664322 3344478888887761 111 11238899999999999999999988764
Q ss_pred hcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEecc----CCC
Q 040403 363 MLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLS----AVG 438 (623)
Q Consensus 363 ~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S----~~~ 438 (623)
|+ +++.+|+.. .. .+. .++ ...+|.|+++ +.|+++=.- ...
T Consensus 169 --G~----------~V~~~d~~~----~~-~~~----~~~------------~~~~l~ell~--~aDvV~~~~p~t~~t~ 213 (331)
T 1xdw_A 169 --GA----------TVIGEDVFE----IK-GIE----DYC------------TQVSLDEVLE--KSDIITIHAPYIKENG 213 (331)
T ss_dssp --TC----------EEEEECSSC----CC-SCT----TTC------------EECCHHHHHH--HCSEEEECCCCCTTTC
T ss_pred --CC----------EEEEECCCc----cH-HHH----hcc------------ccCCHHHHHh--hCCEEEEecCCchHHH
Confidence 74 478888742 11 010 111 1236889988 789888631 234
Q ss_pred CCCCHHHHHHcccCCCCCCEEEecCC
Q 040403 439 GLFSKEVLEAMRGSTSTRPAIFAMSN 464 (623)
Q Consensus 439 g~Ft~evv~~M~a~~~erPIIFaLSN 464 (623)
+.|+++.++.| .+.-++.=.|.
T Consensus 214 ~li~~~~l~~m----k~ga~lin~sr 235 (331)
T 1xdw_A 214 AVVTRDFLKKM----KDGAILVNCAR 235 (331)
T ss_dssp CSBCHHHHHTS----CTTEEEEECSC
T ss_pred HHhCHHHHhhC----CCCcEEEECCC
Confidence 78999999999 56678887875
No 168
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}
Probab=80.38 E-value=4.4 Score=41.95 Aligned_cols=216 Identities=13% Similarity=0.182 Sum_probs=119.5
Q ss_pred HhCCce-eeecccCCCchHHHHHHHHh-ccCCccccCcc---hhHHHHHHHHHHHHHHh------------------CCC
Q 040403 275 TRWPNV-IVQFEDFQSKWAFKLLQRYR-YKYRMFNDDVQ---GTAGVAVAGLLGAVRAQ------------------GRS 331 (623)
Q Consensus 275 ~~~P~~-lIqfEDf~~~nAf~lL~ryr-~~~~~FNDDiQ---GTaaV~lAgll~A~r~~------------------g~~ 331 (623)
...|+. .|+.-=.+..| ..+ +..+ ..+++.|---- .+|=-+++.+|+..|-. +..
T Consensus 57 ~~~~~Lk~I~~~~~G~d~-id~-~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~~W~~~~~~~~ 134 (324)
T 3evt_A 57 RPTNQLKFVQVISAGVDY-LPL-KALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGARQWALPMTTST 134 (324)
T ss_dssp STTCCCCEEECSSSCCTT-SCH-HHHHHTTCEEECCTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCSSCSSCCCC
T ss_pred hhCCCceEEEECCccccc-cCH-HHHHHCCcEEEECCCcCchHHHHHHHHHHHHHHhChhHHHHHHHhcCCcccCCCCcc
Confidence 345664 55554444443 222 2233 35777776532 33444788888776521 344
Q ss_pred CCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhccc
Q 040403 332 MIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQ 411 (623)
Q Consensus 332 ~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~ 411 (623)
|.+.+|.|+|.|..|-.+|+.+... |+ +++.+|+..-- .+.+..
T Consensus 135 ---l~gktvGIiGlG~IG~~vA~~l~~~-----G~----------~V~~~dr~~~~---~~~~~~--------------- 178 (324)
T 3evt_A 135 ---LTGQQLLIYGTGQIGQSLAAKASAL-----GM----------HVIGVNTTGHP---ADHFHE--------------- 178 (324)
T ss_dssp ---STTCEEEEECCSHHHHHHHHHHHHT-----TC----------EEEEEESSCCC---CTTCSE---------------
T ss_pred ---ccCCeEEEECcCHHHHHHHHHHHhC-----CC----------EEEEECCCcch---hHhHhh---------------
Confidence 9999999999999999999988764 74 57778875310 011110
Q ss_pred ccCCCCCHHHHHhhcCCcEEEecc----CCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccCCcEEEe
Q 040403 412 GLWEGASLVEVVQQVKPDVLLGLS----AVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFA 487 (623)
Q Consensus 412 ~~~~~~~L~e~V~~vkptvLIG~S----~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~Grai~A 487 (623)
.....+|.|+++ +.|+++=.- ...+.|+++.+..| .+..++.=.|.-..--|-.-.+|++ +|+.-.|
T Consensus 179 -~~~~~~l~ell~--~aDvV~l~lPlt~~t~~li~~~~l~~m----k~gailIN~aRG~~vd~~aL~~aL~--~g~i~gA 249 (324)
T 3evt_A 179 -TVAFTATADALA--TANFIVNALPLTPTTHHLFSTELFQQT----KQQPMLINIGRGPAVDTTALMTALD--HHQLSMA 249 (324)
T ss_dssp -EEEGGGCHHHHH--HCSEEEECCCCCGGGTTCBSHHHHHTC----CSCCEEEECSCGGGBCHHHHHHHHH--TTSCSEE
T ss_pred -ccccCCHHHHHh--hCCEEEEcCCCchHHHHhcCHHHHhcC----CCCCEEEEcCCChhhhHHHHHHHHH--hCCceEE
Confidence 011235888888 788888431 23588999999999 6777888777743223333333443 3443222
Q ss_pred cCCC-CCccccCCCeeccCCCCccccchhHHHHHHHHcCCcccCHHHHHHHHHHHHccc
Q 040403 488 SGSP-FKDVDLGNGHIGHCNQGNNMYLFPGVGLGTLLSGSRIISDGMLQAAAECLAEYM 545 (623)
Q Consensus 488 tGsP-F~pv~~~~G~~~~p~Q~NN~yiFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v 545 (623)
|.. |.+-..+.+. .--+..|+.+-|=++- ....-.+.|...+++-|....
T Consensus 250 -~lDV~~~EPl~~~~--pL~~~~nvilTPHia~-----~t~~~~~~~~~~~~~nl~~~l 300 (324)
T 3evt_A 250 -ALDVTEPEPLPTDH--PLWQRDDVLITPHISG-----QIAHFRATVFPIFAANFAQFV 300 (324)
T ss_dssp -EESSCSSSSCCTTC--GGGGCSSEEECCSCTT-----CCCCHHHHHHHHHHHHHHHHH
T ss_pred -EeCCCCCCCCCCCC--hhhcCCCEEEcCcccc-----ChHHHHHHHHHHHHHHHHHHH
Confidence 111 1110011010 0123457777776542 112223556666666665554
No 169
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=80.26 E-value=3.1 Score=41.12 Aligned_cols=92 Identities=9% Similarity=0.132 Sum_probs=57.2
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCC
Q 040403 338 QKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEG 416 (623)
Q Consensus 338 ~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~ 416 (623)
.||.|+|+ |..|..+|..|... | -+++++|++ .+....+.. .. -..
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~-----g----------~~V~~~~r~----------~~~~~~~~~--~g------~~~ 58 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDS-----A----------HHLAAIEIA----------PEGRDRLQG--MG------IPL 58 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHS-----S----------SEEEEECCS----------HHHHHHHHH--TT------CCC
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-----C----------CEEEEEECC----------HHHHHHHHh--cC------CCc
Confidence 48999999 99999999988763 6 257788863 111112221 01 111
Q ss_pred CCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCC
Q 040403 417 ASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPT 466 (623)
Q Consensus 417 ~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt 466 (623)
.++.++++ ++|++|=+- .+.. .+++++.++....+..||.-+|+..
T Consensus 59 ~~~~~~~~--~aDvVi~av-~~~~-~~~v~~~l~~~l~~~~ivv~~s~~~ 104 (286)
T 3c24_A 59 TDGDGWID--EADVVVLAL-PDNI-IEKVAEDIVPRVRPGTIVLILDAAA 104 (286)
T ss_dssp CCSSGGGG--TCSEEEECS-CHHH-HHHHHHHHGGGSCTTCEEEESCSHH
T ss_pred CCHHHHhc--CCCEEEEcC-CchH-HHHHHHHHHHhCCCCCEEEECCCCc
Confidence 25667777 788888433 3333 5888888722234566777788854
No 170
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Probab=80.23 E-value=1.3 Score=46.32 Aligned_cols=36 Identities=22% Similarity=0.391 Sum_probs=32.4
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
|++.||+|+|+|..|.-+|..|+.+ |+ ++|.++|.+
T Consensus 116 L~~~~VlvvG~GglGs~va~~La~a-----Gv---------g~i~lvD~D 151 (353)
T 3h5n_A 116 LKNAKVVILGCGGIGNHVSVILATS-----GI---------GEIILIDND 151 (353)
T ss_dssp HHTCEEEEECCSHHHHHHHHHHHHH-----TC---------SEEEEEECC
T ss_pred HhCCeEEEECCCHHHHHHHHHHHhC-----CC---------CeEEEECCC
Confidence 6788999999999999999999887 96 789999986
No 171
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=80.23 E-value=4.6 Score=42.82 Aligned_cols=115 Identities=17% Similarity=0.184 Sum_probs=64.4
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhccccc
Q 040403 334 DFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGL 413 (623)
Q Consensus 334 ~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~ 413 (623)
+++.+||+|+|.|.+|++.|+.+.+ . |. ++...|++-.. +....++ ....+ .
T Consensus 2 ~~~~~~v~viG~G~~G~~~a~~l~~----~-G~----------~v~~~D~~~~~--------~~~~~l~-~G~~~----~ 53 (439)
T 2x5o_A 2 DYQGKNVVIIGLGLTGLSCVDFFLA----R-GV----------TPRVMDTRMTP--------PGLDKLP-EAVER----H 53 (439)
T ss_dssp CCTTCCEEEECCHHHHHHHHHHHHT----T-TC----------CCEEEESSSSC--------TTGGGSC-TTSCE----E
T ss_pred CCCCCEEEEEeecHHHHHHHHHHHh----C-CC----------EEEEEECCCCc--------chhHHhh-CCCEE----E
Confidence 3778899999999999999866654 2 73 46778875321 1111121 10111 0
Q ss_pred CCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCC
Q 040403 414 WEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGSPFK 493 (623)
Q Consensus 414 ~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~Grai~AtGsPF~ 493 (623)
.+.. -.+.++ +++.+|=.++.+- -.+++..+. . ...|++ + | .|-++...+.+.|-.|||
T Consensus 54 ~g~~-~~~~~~--~~d~vV~s~gi~~-~~p~~~~a~-~--~~~~v~---~------~--~~~~~~~~~~~vI~VTGT--- 112 (439)
T 2x5o_A 54 TGSL-NDEWLM--AADLIVASPGIAL-AHPSLSAAA-D--AGIEIV---G------D--IELFCREAQAPIVAITGS--- 112 (439)
T ss_dssp ESSC-CHHHHH--TCSEEEECTTSCT-TCHHHHHHH-H--TTCEEE---C------H--HHHHHHHCCSCEEEEECS---
T ss_pred ECCC-cHHHhc--cCCEEEeCCCCCC-CCHHHHHHH-H--CCCcEE---E------H--HHHHHHhcCCCEEEEECC---
Confidence 0111 256676 7888774444432 246666543 1 223333 1 1 233444456788999998
Q ss_pred ccccCCCee
Q 040403 494 DVDLGNGHI 502 (623)
Q Consensus 494 pv~~~~G~~ 502 (623)
||||
T Consensus 113 -----nGKT 116 (439)
T 2x5o_A 113 -----NGKS 116 (439)
T ss_dssp -----SSHH
T ss_pred -----CCHH
Confidence 8985
No 172
>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*
Probab=80.17 E-value=12 Score=39.09 Aligned_cols=123 Identities=14% Similarity=0.171 Sum_probs=81.5
Q ss_pred cCCccccCc---chhHHHHHHHHHHHHHH----------hCC-------CCCCCCCceEEEeCcchHHHHHHHHHHHHHH
Q 040403 302 KYRMFNDDV---QGTAGVAVAGLLGAVRA----------QGR-------SMIDFPKQKIVVAGAGSAGLGVLNAARKTMA 361 (623)
Q Consensus 302 ~~~~FNDDi---QGTaaV~lAgll~A~r~----------~g~-------~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~ 361 (623)
.|.+.|--- +.+|=-+++-+|+..|- .|. ....|.+.+|.|+|.|..|..+|+.+...
T Consensus 93 gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~~w~~~~~~~~l~gktvgIiGlG~IG~~vA~~l~~~-- 170 (343)
T 2yq5_A 93 NLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWPSNLISNEIYNLTVGLIGVGHIGSAVAEIFSAM-- 170 (343)
T ss_dssp -CEEECCSCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCCCCGGGCBCCGGGSEEEEECCSHHHHHHHHHHHHT--
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHHhchHHHHHHHHHcCCcccccCCCccccCCCeEEEEecCHHHHHHHHHHhhC--
Confidence 366666422 23444578888877651 221 01138899999999999999999988764
Q ss_pred HhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEecc----CC
Q 040403 362 RMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLS----AV 437 (623)
Q Consensus 362 ~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S----~~ 437 (623)
|+ +++.+|+..- . .+. . .....+|.|+++ +.|+++=.- ..
T Consensus 171 ---G~----------~V~~~d~~~~---------~---~~~----~-----~~~~~~l~ell~--~aDvV~l~~Plt~~t 214 (343)
T 2yq5_A 171 ---GA----------KVIAYDVAYN---------P---EFE----P-----FLTYTDFDTVLK--EADIVSLHTPLFPST 214 (343)
T ss_dssp ---TC----------EEEEECSSCC---------G---GGT----T-----TCEECCHHHHHH--HCSEEEECCCCCTTT
T ss_pred ---CC----------EEEEECCChh---------h---hhh----c-----cccccCHHHHHh--cCCEEEEcCCCCHHH
Confidence 74 5788888520 0 010 1 011237999998 799988543 23
Q ss_pred CCCCCHHHHHHcccCCCCCCEEEecCCCC
Q 040403 438 GGLFSKEVLEAMRGSTSTRPAIFAMSNPT 466 (623)
Q Consensus 438 ~g~Ft~evv~~M~a~~~erPIIFaLSNPt 466 (623)
.+.|+++.+..| .+..++.=.|.-.
T Consensus 215 ~~li~~~~l~~m----k~gailIN~aRg~ 239 (343)
T 2yq5_A 215 ENMIGEKQLKEM----KKSAYLINCARGE 239 (343)
T ss_dssp TTCBCHHHHHHS----CTTCEEEECSCGG
T ss_pred HHHhhHHHHhhC----CCCcEEEECCCCh
Confidence 588999999999 6777888777643
No 173
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*
Probab=80.13 E-value=13 Score=38.20 Aligned_cols=125 Identities=16% Similarity=0.133 Sum_probs=81.3
Q ss_pred ccCCccccCcch---hHHHHHHHHHHHHHHh---------C------CCCCCCCCceEEEeCcchHHHHHHHHHHHHHHH
Q 040403 301 YKYRMFNDDVQG---TAGVAVAGLLGAVRAQ---------G------RSMIDFPKQKIVVAGAGSAGLGVLNAARKTMAR 362 (623)
Q Consensus 301 ~~~~~FNDDiQG---TaaV~lAgll~A~r~~---------g------~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~ 362 (623)
..+.+.|----. +|=-+++.+|+..|-. | .....|.+.+|.|+|.|..|..+|+.+...
T Consensus 92 ~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~--- 168 (333)
T 1j4a_A 92 LGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGF--- 168 (333)
T ss_dssp TTCEEECCCCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTCCBCCGGGSEEEEECCSHHHHHHHHHHHHT---
T ss_pred CCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCCcccccCCCCEEEEEccCHHHHHHHHHHHHC---
Confidence 346666653323 3444788888887621 1 011138899999999999999999988763
Q ss_pred hcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccC----CC
Q 040403 363 MLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSA----VG 438 (623)
Q Consensus 363 ~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~----~~ 438 (623)
|+ +++.+|+.. . +. + . +. .....+|.|+++ +.|+++=+-. ..
T Consensus 169 --G~----------~V~~~d~~~---------~--~~-~-~---~~----~~~~~~l~ell~--~aDvV~l~~p~~~~t~ 214 (333)
T 1j4a_A 169 --GA----------KVITYDIFR---------N--PE-L-E---KK----GYYVDSLDDLYK--QADVISLHVPDVPANV 214 (333)
T ss_dssp --TC----------EEEEECSSC---------C--HH-H-H---HT----TCBCSCHHHHHH--HCSEEEECSCCCGGGT
T ss_pred --CC----------EEEEECCCc---------c--hh-H-H---hh----CeecCCHHHHHh--hCCEEEEcCCCcHHHH
Confidence 74 578888741 1 11 1 1 10 011236999998 7888885421 34
Q ss_pred CCCCHHHHHHcccCCCCCCEEEecCCCC
Q 040403 439 GLFSKEVLEAMRGSTSTRPAIFAMSNPT 466 (623)
Q Consensus 439 g~Ft~evv~~M~a~~~erPIIFaLSNPt 466 (623)
+.|+++.++.| .+..++.-.|.-.
T Consensus 215 ~li~~~~l~~m----k~ga~lIn~arg~ 238 (333)
T 1j4a_A 215 HMINDESIAKM----KQDVVIVNVSRGP 238 (333)
T ss_dssp TCBSHHHHHHS----CTTEEEEECSCGG
T ss_pred HHHhHHHHhhC----CCCcEEEECCCCc
Confidence 77889999999 5667888777743
No 174
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=80.12 E-value=1.9 Score=43.69 Aligned_cols=35 Identities=26% Similarity=0.286 Sum_probs=28.3
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
....||.|+|+|..|.++|..+... |. +++++|+.
T Consensus 29 ~~~~~I~iIG~G~mG~~~a~~l~~~-----G~----------~V~~~dr~ 63 (320)
T 4dll_A 29 PYARKITFLGTGSMGLPMARRLCEA-----GY----------ALQVWNRT 63 (320)
T ss_dssp CCCSEEEEECCTTTHHHHHHHHHHT-----TC----------EEEEECSC
T ss_pred cCCCEEEEECccHHHHHHHHHHHhC-----CC----------eEEEEcCC
Confidence 3567999999999999999998874 73 47777873
No 175
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Probab=80.08 E-value=0.56 Score=48.01 Aligned_cols=115 Identities=15% Similarity=0.214 Sum_probs=68.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhc-ccccCCCC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEIS-RQGLWEGA 417 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~-~~~~~~~~ 417 (623)
||.|+|||..|.++|..|... |+ ...+.|+|.+-=. +......+.+....+. +.......
T Consensus 2 kI~ViGaG~vG~~la~~l~~~-----~~--------~~~v~L~D~~~~~------~~g~~~dl~~~~~~~~~~~~i~~t~ 62 (294)
T 1oju_A 2 KLGFVGAGRVGSTSAFTCLLN-----LD--------VDEIALVDIAEDL------AVGEAMDLAHAAAGIDKYPKIVGGA 62 (294)
T ss_dssp EEEEECCSHHHHHHHHHHHHH-----SC--------CSEEEEECSSHHH------HHHHHHHHHHHHHTTTCCCEEEEES
T ss_pred EEEEECCCHHHHHHHHHHHhC-----CC--------CCeEEEEECChHH------HHHHHHHHHhhhhhcCCCCEEEEeC
Confidence 799999999999999887664 64 2479999984210 1000011111000000 00001123
Q ss_pred CHHHHHhhcCCcEEEeccCCC---CC-----C------CHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcc
Q 040403 418 SLVEVVQQVKPDVLLGLSAVG---GL-----F------SKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSI 479 (623)
Q Consensus 418 ~L~e~V~~vkptvLIG~S~~~---g~-----F------t~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~w 479 (623)
+ .++++ +.|++|=+.+.+ |- | -+++++.| .++++.-+|+-.|||. .....-+++.
T Consensus 63 d-~~a~~--~aDiVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i-~~~~p~a~iivvsNPv---d~~t~~~~k~ 131 (294)
T 1oju_A 63 D-YSLLK--GSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKI-VENAPESKILVVTNPM---DVMTYIMWKE 131 (294)
T ss_dssp C-GGGGT--TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHH-HTTSTTCEEEECSSSH---HHHHHHHHHH
T ss_pred C-HHHhC--CCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHH-HhhCCCeEEEEeCCcc---hHHHHHHHHh
Confidence 4 77888 899887544433 32 1 25677788 8899999999999998 3444455544
No 176
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1
Probab=79.82 E-value=11 Score=38.65 Aligned_cols=121 Identities=16% Similarity=0.170 Sum_probs=78.8
Q ss_pred cCCccccCc---chhHHHHHHHHHHHHHHh---------------------CCCCCCCCCceEEEeCcchHHHHHHHHHH
Q 040403 302 KYRMFNDDV---QGTAGVAVAGLLGAVRAQ---------------------GRSMIDFPKQKIVVAGAGSAGLGVLNAAR 357 (623)
Q Consensus 302 ~~~~FNDDi---QGTaaV~lAgll~A~r~~---------------------g~~~~~l~d~riv~~GAGsAg~GIA~ll~ 357 (623)
.+.+.|--- +.+|=-+++.+|+..|-. +.. |.+.+|.|+|.|..|-.+|+.+.
T Consensus 90 gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~---l~g~~vgIIG~G~IG~~~A~~l~ 166 (320)
T 1gdh_A 90 GIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEK---LDNKTLGIYGFGSIGQALAKRAQ 166 (320)
T ss_dssp TCEEECCCCSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCC---CTTCEEEEECCSHHHHHHHHHHH
T ss_pred CcEEEEcCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHcCCCCccccccccCcC---CCCCEEEEECcCHHHHHHHHHHH
Confidence 455555432 233444788888876632 233 89999999999999999999887
Q ss_pred HHHHHhcCCCcchhhhccCeEEEEcc-CCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccC
Q 040403 358 KTMARMLGNNESAFDSARSQFWVVDA-KGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSA 436 (623)
Q Consensus 358 ~~m~~~~Gls~~~~eeA~~~i~lvD~-~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~ 436 (623)
.. |+ +++.+|+ .. .. ..+... . .....+|.|+++ +.|+++=.--
T Consensus 167 ~~-----G~----------~V~~~d~~~~---------~~---~~~~~~-g-----~~~~~~l~ell~--~aDvVil~~p 211 (320)
T 1gdh_A 167 GF-----DM----------DIDYFDTHRA---------SS---SDEASY-Q-----ATFHDSLDSLLS--VSQFFSLNAP 211 (320)
T ss_dssp TT-----TC----------EEEEECSSCC---------CH---HHHHHH-T-----CEECSSHHHHHH--HCSEEEECCC
T ss_pred HC-----CC----------EEEEECCCCc---------Ch---hhhhhc-C-----cEEcCCHHHHHh--hCCEEEEecc
Confidence 53 63 5888887 41 11 122111 1 111237999998 7888874321
Q ss_pred ----CCCCCCHHHHHHcccCCCCCCEEEecCC
Q 040403 437 ----VGGLFSKEVLEAMRGSTSTRPAIFAMSN 464 (623)
Q Consensus 437 ----~~g~Ft~evv~~M~a~~~erPIIFaLSN 464 (623)
..+.++++.++.| .+.-+|.-.|.
T Consensus 212 ~~~~t~~~i~~~~l~~m----k~gailIn~ar 239 (320)
T 1gdh_A 212 STPETRYFFNKATIKSL----PQGAIVVNTAR 239 (320)
T ss_dssp CCTTTTTCBSHHHHTTS----CTTEEEEECSC
T ss_pred CchHHHhhcCHHHHhhC----CCCcEEEECCC
Confidence 3467888899999 56678877776
No 177
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Probab=79.65 E-value=2.2 Score=41.66 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=25.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
||.|+|+|..|..+|..+... |. +++++|++
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~-----g~----------~V~~~~~~ 32 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRR-----GH----------YLIGVSRQ 32 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-----TC----------EEEEECSC
T ss_pred EEEEEcCcHHHHHHHHHHHHC-----CC----------EEEEEECC
Confidence 799999999999999888763 62 58888864
No 178
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}
Probab=79.64 E-value=2.6 Score=42.85 Aligned_cols=99 Identities=11% Similarity=0.118 Sum_probs=59.6
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhc------c
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEIS------R 410 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~------~ 410 (623)
..||.|+|+|+-|..+|..|... |. ++.++|+.- ....+.+..-... .
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~-----g~----------~V~~~~r~~-----------~~~~~~~~g~~~~~~~~~~~ 56 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALA-----GE----------AINVLARGA-----------TLQALQTAGLRLTEDGATHT 56 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHT-----TC----------CEEEECCHH-----------HHHHHHHTCEEEEETTEEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-----CC----------EEEEEEChH-----------HHHHHHHCCCEEecCCCeEE
Confidence 36899999999999999988774 62 477777631 0111111000000 0
Q ss_pred cccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCC
Q 040403 411 QGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPT 466 (623)
Q Consensus 411 ~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt 466 (623)
+......++.+ ++ ++|++| ++. +.-.++++++.++....+..+|..++|..
T Consensus 57 ~~~~~~~~~~~-~~--~~D~Vi-lav-k~~~~~~~~~~l~~~l~~~~~iv~~~nGi 107 (335)
T 3ghy_A 57 LPVRATHDAAA-LG--EQDVVI-VAV-KAPALESVAAGIAPLIGPGTCVVVAMNGV 107 (335)
T ss_dssp ECCEEESCHHH-HC--CCSEEE-ECC-CHHHHHHHHGGGSSSCCTTCEEEECCSSS
T ss_pred EeeeEECCHHH-cC--CCCEEE-EeC-CchhHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 00011245665 44 788877 442 33467899999844455778999999994
No 179
>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}
Probab=79.50 E-value=5.5 Score=43.40 Aligned_cols=33 Identities=30% Similarity=0.537 Sum_probs=27.3
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
-.||.|+|+|..|.|||..+..+ |. +++++|++
T Consensus 5 ~~kVgVIGaG~MG~~IA~~la~a-----G~----------~V~l~D~~ 37 (483)
T 3mog_A 5 VQTVAVIGSGTMGAGIAEVAASH-----GH----------QVLLYDIS 37 (483)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHT-----TC----------CEEEECSC
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-----CC----------eEEEEECC
Confidence 35899999999999999998875 84 47788864
No 180
>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}
Probab=79.24 E-value=3.2 Score=40.78 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=19.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 040403 338 QKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~ 359 (623)
.||.|+|+|..|..+|..|...
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~ 25 (295)
T 1yb4_A 4 MKLGFIGLGIMGSPMAINLARA 25 (295)
T ss_dssp CEEEECCCSTTHHHHHHHHHHT
T ss_pred CEEEEEccCHHHHHHHHHHHhC
Confidence 4899999999999999988763
No 181
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}
Probab=78.97 E-value=3.8 Score=41.47 Aligned_cols=102 Identities=15% Similarity=0.241 Sum_probs=55.8
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhc----c
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEIS----R 410 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~----~ 410 (623)
....||.|+|+|+-|..+|..|... |. +++++ ++. +....+.+...... .
T Consensus 17 ~~~~kI~IiGaGa~G~~~a~~L~~~-----G~----------~V~l~-~~~----------~~~~~i~~~g~~~~~~~~~ 70 (318)
T 3hwr_A 17 FQGMKVAIMGAGAVGCYYGGMLARA-----GH----------EVILI-ARP----------QHVQAIEATGLRLETQSFD 70 (318)
T ss_dssp ---CEEEEESCSHHHHHHHHHHHHT-----TC----------EEEEE-CCH----------HHHHHHHHHCEEEECSSCE
T ss_pred ccCCcEEEECcCHHHHHHHHHHHHC-----CC----------eEEEE-EcH----------hHHHHHHhCCeEEEcCCCc
Confidence 5678999999999999999998764 63 34444 321 01111111000000 0
Q ss_pred c--ccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCC
Q 040403 411 Q--GLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTN 467 (623)
Q Consensus 411 ~--~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~ 467 (623)
. ......++.+ ++ .+|++| ++. +-...+++++.++....+..+|..++|...
T Consensus 71 ~~~~~~~~~~~~~-~~--~~D~vi-lav-k~~~~~~~l~~l~~~l~~~~~iv~~~nGi~ 124 (318)
T 3hwr_A 71 EQVKVSASSDPSA-VQ--GADLVL-FCV-KSTDTQSAALAMKPALAKSALVLSLQNGVE 124 (318)
T ss_dssp EEECCEEESCGGG-GT--TCSEEE-ECC-CGGGHHHHHHHHTTTSCTTCEEEEECSSSS
T ss_pred EEEeeeeeCCHHH-cC--CCCEEE-EEc-ccccHHHHHHHHHHhcCCCCEEEEeCCCCC
Confidence 0 0001233433 34 678776 442 233679999998434456678888999875
No 182
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*
Probab=78.96 E-value=13 Score=38.66 Aligned_cols=217 Identities=15% Similarity=0.092 Sum_probs=123.0
Q ss_pred hCCce-eeecccCCCchHHHHHHHHhccCCccccCc---chhHHHHHHHHHHHHHHh---------CCC-----------
Q 040403 276 RWPNV-IVQFEDFQSKWAFKLLQRYRYKYRMFNDDV---QGTAGVAVAGLLGAVRAQ---------GRS----------- 331 (623)
Q Consensus 276 ~~P~~-lIqfEDf~~~nAf~lL~ryr~~~~~FNDDi---QGTaaV~lAgll~A~r~~---------g~~----------- 331 (623)
..|+. +|+.--.+..| ..+-.--+..+.+.|--- ..+|=-+++.+|+..|-. |.-
T Consensus 82 ~~~~Lk~I~~~~~G~d~-id~~~~~~~gI~V~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~ 160 (347)
T 1mx3_A 82 KFKALRIIVRIGSGFDN-IDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVA 160 (347)
T ss_dssp TCSSCCEEEESSSCCTT-BCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHT
T ss_pred hCCCCCEEEEcccccCc-ccHHHHHhCCceEEECCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccccccccc
Confidence 34664 66666666655 222222233477776433 334555788888887721 110
Q ss_pred --CCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhc
Q 040403 332 --MIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEIS 409 (623)
Q Consensus 332 --~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~ 409 (623)
..+|.+.+|.|+|.|..|..+|+.+... |+ +++.+|++- .+ ..++. ..
T Consensus 161 ~~~~~l~g~tvGIIG~G~IG~~vA~~l~~~-----G~----------~V~~~d~~~---------~~---~~~~~-~g-- 210 (347)
T 1mx3_A 161 SGAARIRGETLGIIGLGRVGQAVALRAKAF-----GF----------NVLFYDPYL---------SD---GVERA-LG-- 210 (347)
T ss_dssp TTCCCCTTCEEEEECCSHHHHHHHHHHHTT-----TC----------EEEEECTTS---------CT---THHHH-HT--
T ss_pred cCccCCCCCEEEEEeECHHHHHHHHHHHHC-----CC----------EEEEECCCc---------ch---hhHhh-cC--
Confidence 0238999999999999999999988753 74 477788641 11 11111 01
Q ss_pred ccccCCCCCHHHHHhhcCCcEEEecc----CCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccCCcEE
Q 040403 410 RQGLWEGASLVEVVQQVKPDVLLGLS----AVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNII 485 (623)
Q Consensus 410 ~~~~~~~~~L~e~V~~vkptvLIG~S----~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~Grai 485 (623)
.....+|.|+++ +.|+++=.- ...+.++++.++.| .+.-++.=.|+=..--|..-.+|++ +|+.-
T Consensus 211 ---~~~~~~l~ell~--~aDvV~l~~P~t~~t~~li~~~~l~~m----k~gailIN~arg~~vd~~aL~~aL~--~g~i~ 279 (347)
T 1mx3_A 211 ---LQRVSTLQDLLF--HSDCVTLHCGLNEHNHHLINDFTVKQM----RQGAFLVNTARGGLVDEKALAQALK--EGRIR 279 (347)
T ss_dssp ---CEECSSHHHHHH--HCSEEEECCCCCTTCTTSBSHHHHTTS----CTTEEEEECSCTTSBCHHHHHHHHH--HTSEE
T ss_pred ---CeecCCHHHHHh--cCCEEEEcCCCCHHHHHHhHHHHHhcC----CCCCEEEECCCChHHhHHHHHHHHH--hCCCc
Confidence 112347999998 789887532 23477889999999 5667888888744223333334443 35443
Q ss_pred Ee-----cCCCCCccccCCCeeccCCCCccccchhHHHHHHHHcCCcccCHHHHHHHHHHHHccc
Q 040403 486 FA-----SGSPFKDVDLGNGHIGHCNQGNNMYLFPGVGLGTLLSGSRIISDGMLQAAAECLAEYM 545 (623)
Q Consensus 486 ~A-----tGsPF~pv~~~~G~~~~p~Q~NN~yiFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v 545 (623)
-| ..-|+++ .+.. --..+|+.+-|=++- -.......|...+++-+....
T Consensus 280 gA~lDV~~~EP~~~----~~~~--L~~~~nvi~tPHia~-----~t~~~~~~~~~~~~~ni~~~~ 333 (347)
T 1mx3_A 280 GAALDVHESEPFSF----SQGP--LKDAPNLICTPHAAW-----YSEQASIEMREEAAREIRRAI 333 (347)
T ss_dssp EEEESCCSSSSCCT----TSST--TTTCSSEEECSSCTT-----CCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeecccCCCCC----CCch--HHhCCCEEEEchHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 22 2223210 1111 124789999997653 112223445555555555543
No 183
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*
Probab=78.70 E-value=2.8 Score=42.96 Aligned_cols=118 Identities=11% Similarity=0.165 Sum_probs=68.9
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWE 415 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~ 415 (623)
...||.|+|||+.|..+|-.|... |+ ...++|+|.+- ++ +......+.+. .+..+-...-
T Consensus 5 ~~~KI~IIGaG~vG~~la~~l~~~-----~~--------~~ei~L~Di~~----~~--~~g~~~dl~~~-~~~~~~~~~v 64 (317)
T 3d0o_A 5 KGNKVVLIGNGAVGSSYAFSLVNQ-----SI--------VDELVIIDLDT----EK--VRGDVMDLKHA-TPYSPTTVRV 64 (317)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHH-----CS--------CSEEEEECSCH----HH--HHHHHHHHHHH-GGGSSSCCEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-----CC--------CCEEEEEeCCh----hH--hhhhhhhHHhh-hhhcCCCeEE
Confidence 456999999999999988876653 64 25799999741 00 11111112111 0100000000
Q ss_pred CCCHHHHHhhcCCcEEEeccCCCCC--------------CCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcc
Q 040403 416 GASLVEVVQQVKPDVLLGLSAVGGL--------------FSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSI 479 (623)
Q Consensus 416 ~~~L~e~V~~vkptvLIG~S~~~g~--------------Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~w 479 (623)
..+..++++ +.|++|=+.+.+.. .=+++++.| .++++.-+|+-.|||. -...+-+++.
T Consensus 65 ~~~~~~a~~--~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i-~~~~p~a~viv~tNPv---~~~t~~~~k~ 136 (317)
T 3d0o_A 65 KAGEYSDCH--DADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEV-MASKFDGIFLVATNPV---DILAYATWKF 136 (317)
T ss_dssp EECCGGGGT--TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHH-HHTTCCSEEEECSSSH---HHHHHHHHHH
T ss_pred EeCCHHHhC--CCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHH-HHhCCCcEEEEecCcH---HHHHHHHHHH
Confidence 113466777 89999855554432 124577777 7789999999999998 2344445454
No 184
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}
Probab=78.69 E-value=17 Score=37.08 Aligned_cols=158 Identities=15% Similarity=0.095 Sum_probs=93.3
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLW 414 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~ 414 (623)
|.+.+|.|+|.|..|..+|+.+... |+ +++.+|+..- . ... + .
T Consensus 120 l~g~tvGIIGlG~IG~~vA~~l~~~-----G~----------~V~~~dr~~~----~--~~~-----~-----------~ 162 (290)
T 3gvx_A 120 LYGKALGILGYGGIGRRVAHLAKAF-----GM----------RVIAYTRSSV----D--QNV-----D-----------V 162 (290)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHH-----TC----------EEEEECSSCC----C--TTC-----S-----------E
T ss_pred eecchheeeccCchhHHHHHHHHhh-----Cc----------EEEEEecccc----c--ccc-----c-----------c
Confidence 8999999999999999999998875 84 5788887521 0 100 1 1
Q ss_pred CCCCHHHHHhhcCCcEEEecc----CCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccCCcEEEecCC
Q 040403 415 EGASLVEVVQQVKPDVLLGLS----AVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGS 490 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLIG~S----~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~Grai~AtGs 490 (623)
...+|.|+++ +.|+++=.- ...+.|+++.++.| .+..+|.=.|.-..--|---.+|++ +|+.-.|. .
T Consensus 163 ~~~~l~ell~--~aDiV~l~~P~t~~t~~li~~~~l~~m----k~gailIN~aRG~~vd~~aL~~aL~--~g~i~ga~-l 233 (290)
T 3gvx_A 163 ISESPADLFR--QSDFVLIAIPLTDKTRGMVNSRLLANA----RKNLTIVNVARADVVSKPDMIGFLK--ERSDVWYL-S 233 (290)
T ss_dssp ECSSHHHHHH--HCSEEEECCCCCTTTTTCBSHHHHTTC----CTTCEEEECSCGGGBCHHHHHHHHH--HCTTCEEE-E
T ss_pred ccCChHHHhh--ccCeEEEEeeccccchhhhhHHHHhhh----hcCceEEEeehhcccCCcchhhhhh--hccceEEe-e
Confidence 2346899988 788887432 23477899999999 6777888777633222222233333 24332221 1
Q ss_pred CCCccccCCCeeccCCCCccccchhHHHHHHHHcCCcccCHHHHHHHHHHHHcccC
Q 040403 491 PFKDVDLGNGHIGHCNQGNNMYLFPGVGLGTLLSGSRIISDGMLQAAAECLAEYMT 546 (623)
Q Consensus 491 PF~pv~~~~G~~~~p~Q~NN~yiFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v~ 546 (623)
.+-..+- . ..--+..|+.+-|=++=| ....-.+.|...+++-|.....
T Consensus 234 DV~~~EP-~---~pL~~~~nvilTPHiag~----~t~e~~~~~~~~~~~ni~~~~~ 281 (290)
T 3gvx_A 234 DVWWNEP-E---ITETNLRNAILSPHVAGG----MSGEIMDIAIQLAFENVRNFFE 281 (290)
T ss_dssp SCCTTTT-S---CCSCCCSSEEECCSCSSC----BTTBCCHHHHHHHHHHHHHHTC
T ss_pred ccccCCc-c---cchhhhhhhhcCccccCC----ccchHHHHHHHHHHHHHHhhhc
Confidence 1100000 0 111244577777765411 2234456677777777766654
No 185
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=78.44 E-value=1.6 Score=45.48 Aligned_cols=107 Identities=7% Similarity=0.034 Sum_probs=61.2
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCC---C------CCCChhhHHhHHHh
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITED---R------ENIDPDAKPFARKV 405 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~---r------~~l~~~~~~fA~~~ 405 (623)
|+..+|+|+|+|..|.-||+.|+.+ |+ ++|.++|.+= |..+ | .++...|..-+...
T Consensus 34 L~~~~VlivG~GGlG~~ia~~La~~-----Gv---------g~itlvD~d~-V~~sNL~rq~~~~~~diG~~Ka~~~~~~ 98 (346)
T 1y8q_A 34 LRASRVLLVGLKGLGAEIAKNLILA-----GV---------KGLTMLDHEQ-VTPEDPGAQFLIRTGSVGRNRAEASLER 98 (346)
T ss_dssp HHTCEEEEECCSHHHHHHHHHHHHH-----TC---------SEEEEECCCB-CCSSCGGGCTTSCSSCTTSBHHHHHHHH
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHc-----CC---------CEEEEEECCC-cchhhCCCCCccccccCcCCHHHHHHHH
Confidence 6778999999999999999999987 96 7899999752 2211 1 12222232222211
Q ss_pred -hhhcc---cc-cCC--CCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEe
Q 040403 406 -NEISR---QG-LWE--GASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFA 461 (623)
Q Consensus 406 -~~~~~---~~-~~~--~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFa 461 (623)
.+..+ +. ... .....+.++ +.|++|.+.. ..=+...|-.. +.....|.|.+
T Consensus 99 l~~lnp~v~v~~~~~~~~~~~~~~~~--~~dvVv~~~d--~~~~r~~ln~~-~~~~~ip~i~~ 156 (346)
T 1y8q_A 99 AQNLNPMVDVKVDTEDIEKKPESFFT--QFDAVCLTCC--SRDVIVKVDQI-CHKNSIKFFTG 156 (346)
T ss_dssp HHHTCTTSEEEEECSCGGGCCHHHHT--TCSEEEEESC--CHHHHHHHHHH-HHHTTCEEEEE
T ss_pred HHhHCCCeEEEEEecccCcchHHHhc--CCCEEEEcCC--CHHHHHHHHHH-HHHcCCCEEEE
Confidence 11111 00 000 012356666 6788887653 22234445555 55566788765
No 186
>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}
Probab=78.42 E-value=2.1 Score=43.24 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=28.4
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+...||.|+|.|..|.++|..|... |. +++++|++
T Consensus 7 ~~~~~IgiIG~G~mG~~~A~~l~~~-----G~----------~V~~~dr~ 41 (306)
T 3l6d_A 7 SFEFDVSVIGLGAMGTIMAQVLLKQ-----GK----------RVAIWNRS 41 (306)
T ss_dssp CCSCSEEEECCSHHHHHHHHHHHHT-----TC----------CEEEECSS
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHC-----CC----------EEEEEeCC
Confidence 5567999999999999999998874 73 46777764
No 187
>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A
Probab=78.30 E-value=1.1 Score=50.45 Aligned_cols=36 Identities=28% Similarity=0.311 Sum_probs=32.7
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
|++.||+|+|||..|.-||..|+.+ |+ ++|.++|.+
T Consensus 325 L~~~kVLIVGaGGLGs~va~~La~a-----GV---------G~ItLvD~D 360 (598)
T 3vh1_A 325 IKNTKVLLLGAGTLGCYVSRALIAW-----GV---------RKITFVDNG 360 (598)
T ss_dssp HHTCEEEEECCSHHHHHHHHHHHTT-----TC---------CEEEEECCS
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHc-----CC---------CEEEEECCC
Confidence 7889999999999999999999886 95 789999976
No 188
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=78.19 E-value=3.6 Score=41.83 Aligned_cols=102 Identities=13% Similarity=0.156 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCCh
Q 040403 317 AVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDP 396 (623)
Q Consensus 317 ~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~ 396 (623)
.++..+.|++..+.+ .+++|+|+|||..|...+++... .|. ++++.+|+. +
T Consensus 151 ~~~ta~~al~~~~~~----~g~~VlV~GaG~vG~~a~qla~~-----~Ga---------~~Vi~~~~~-----------~ 201 (352)
T 3fpc_A 151 MMTTGFHGAELANIK----LGDTVCVIGIGPVGLMSVAGANH-----LGA---------GRIFAVGSR-----------K 201 (352)
T ss_dssp HHHHHHHHHHHTTCC----TTCCEEEECCSHHHHHHHHHHHT-----TTC---------SSEEEECCC-----------H
T ss_pred hhHHHHHHHHhcCCC----CCCEEEEECCCHHHHHHHHHHHH-----cCC---------cEEEEECCC-----------H
Confidence 344555667766655 57899999998777655444432 374 468888773 4
Q ss_pred hhHHhHHHhhhhcccccCCCCCHHHHHhhc----CCcEEEeccCCCCCCCHHHHHHc
Q 040403 397 DAKPFARKVNEISRQGLWEGASLVEVVQQV----KPDVLLGLSAVGGLFSKEVLEAM 449 (623)
Q Consensus 397 ~~~~fA~~~~~~~~~~~~~~~~L~e~V~~v----kptvLIG~S~~~g~Ft~evv~~M 449 (623)
.+..+++.-.- ..--.....++.+.++.. +.|++|=+++.+. ..++.++.+
T Consensus 202 ~~~~~~~~lGa-~~vi~~~~~~~~~~v~~~t~g~g~D~v~d~~g~~~-~~~~~~~~l 256 (352)
T 3fpc_A 202 HCCDIALEYGA-TDIINYKNGDIVEQILKATDGKGVDKVVIAGGDVH-TFAQAVKMI 256 (352)
T ss_dssp HHHHHHHHHTC-CEEECGGGSCHHHHHHHHTTTCCEEEEEECSSCTT-HHHHHHHHE
T ss_pred HHHHHHHHhCC-ceEEcCCCcCHHHHHHHHcCCCCCCEEEECCCChH-HHHHHHHHH
Confidence 55566643110 000001123455555443 5778876664322 234555555
No 189
>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A
Probab=78.17 E-value=20 Score=36.61 Aligned_cols=103 Identities=18% Similarity=0.173 Sum_probs=61.2
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWE 415 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~ 415 (623)
...++.|+|+|..|-.++..+... .+ .++++++|+. .+..+.|++.-... .....
T Consensus 124 ~~~~v~iIGaG~~a~~~~~al~~~----~~---------~~~V~v~~r~----------~~~a~~la~~~~~~-~~~~~- 178 (322)
T 1omo_A 124 NSSVFGFIGCGTQAYFQLEALRRV----FD---------IGEVKAYDVR----------EKAAKKFVSYCEDR-GISAS- 178 (322)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHH----SC---------CCEEEEECSS----------HHHHHHHHHHHHHT-TCCEE-
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHh----CC---------ccEEEEECCC----------HHHHHHHHHHHHhc-CceEE-
Confidence 467999999999998887777653 13 2678888883 12234455321110 00012
Q ss_pred CCCHHHHHhhcCCcEEEeccCCC-CCCCHHHHHHcccCCCCCCEEEecC--CCCCCCCCCHH
Q 040403 416 GASLVEVVQQVKPDVLLGLSAVG-GLFSKEVLEAMRGSTSTRPAIFAMS--NPTNNAECTPE 474 (623)
Q Consensus 416 ~~~L~e~V~~vkptvLIG~S~~~-g~Ft~evv~~M~a~~~erPIIFaLS--NPt~~~E~tpe 474 (623)
..++.|++ +.|++|=++..+ -.|+. +.+ .+.-.|+.++ +|. +-|+.++
T Consensus 179 ~~~~~e~v---~aDvVi~aTp~~~pv~~~---~~l----~~G~~V~~ig~~~p~-~~el~~~ 229 (322)
T 1omo_A 179 VQPAEEAS---RCDVLVTTTPSRKPVVKA---EWV----EEGTHINAIGADGPG-KQELDVE 229 (322)
T ss_dssp ECCHHHHT---SSSEEEECCCCSSCCBCG---GGC----CTTCEEEECSCCSTT-CCCBCHH
T ss_pred ECCHHHHh---CCCEEEEeeCCCCceecH---HHc----CCCeEEEECCCCCCC-ccccCHH
Confidence 56788988 589998765432 12222 122 3456888883 455 5787764
No 190
>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}
Probab=78.07 E-value=2.1 Score=42.31 Aligned_cols=32 Identities=25% Similarity=0.257 Sum_probs=25.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.||.|+|+|..|..+|..+... |. +++++|++
T Consensus 5 ~~i~iiG~G~~G~~~a~~l~~~-----g~----------~V~~~~~~ 36 (301)
T 3cky_A 5 IKIGFIGLGAMGKPMAINLLKE-----GV----------TVYAFDLM 36 (301)
T ss_dssp CEEEEECCCTTHHHHHHHHHHT-----TC----------EEEEECSS
T ss_pred CEEEEECccHHHHHHHHHHHHC-----CC----------eEEEEeCC
Confidence 5899999999999999888753 62 47778763
No 191
>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6
Probab=77.87 E-value=2 Score=42.34 Aligned_cols=32 Identities=25% Similarity=0.269 Sum_probs=25.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.||.|+|+|..|..+|..+... | -+++++|++
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~-----g----------~~V~~~~~~ 37 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKA-----G----------YSLVVSDRN 37 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT-----T----------CEEEEECSC
T ss_pred ceEEEECchHHHHHHHHHHHhC-----C----------CEEEEEeCC
Confidence 4899999999999999888753 6 247788764
No 192
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}
Probab=77.85 E-value=2.7 Score=43.37 Aligned_cols=115 Identities=18% Similarity=0.185 Sum_probs=67.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCC-C
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEG-A 417 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~-~ 417 (623)
||.|+|||..|.++|..|... |+ ...++++|.+- ++ +......+.+....... ...-. .
T Consensus 2 kv~ViGaG~vG~~~a~~l~~~-----~~--------~~el~l~D~~~----~k--~~g~a~DL~~~~~~~~~-~~~v~~~ 61 (314)
T 3nep_X 2 KVTVIGAGNVGATVAECVARQ-----DV--------AKEVVMVDIKD----GM--PQGKALDMRESSPIHGF-DTRVTGT 61 (314)
T ss_dssp EEEEECCSHHHHHHHHHHHHH-----TC--------SSEEEEECSST----TH--HHHHHHHHHHHHHHHTC-CCEEEEE
T ss_pred EEEEECCCHHHHHHHHHHHhC-----CC--------CCEEEEEeCch----HH--HHHHHHHHhccccccCC-CcEEEEC
Confidence 799999999999999988874 65 24799999852 11 11111111110000000 00001 2
Q ss_pred CHHHHHhhcCCcEEEeccCCC---CC-----------CCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcc
Q 040403 418 SLVEVVQQVKPDVLLGLSAVG---GL-----------FSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSI 479 (623)
Q Consensus 418 ~L~e~V~~vkptvLIG~S~~~---g~-----------Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~w 479 (623)
+..++++ +.|++|=+.+.+ |- .-+++++.+ .++++.-+|+-.|||. .....-+++.
T Consensus 62 ~~~~a~~--~aDvVii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i-~~~~p~a~vivvtNPv---d~~t~~~~k~ 131 (314)
T 3nep_X 62 NDYGPTE--DSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQF-VEGSPDSTIIVVANPL---DVMTYVAYEA 131 (314)
T ss_dssp SSSGGGT--TCSEEEECCCC-------CHHHHHHHHHHHHHHHHHH-HTTCTTCEEEECCSSH---HHHHHHHHHH
T ss_pred CCHHHhC--CCCEEEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHH-HHhCCCcEEEecCCch---hHHHHHHHHh
Confidence 3456777 899887444433 32 125677788 8899999999999998 3334444443
No 193
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Probab=77.57 E-value=1.5 Score=45.00 Aligned_cols=115 Identities=15% Similarity=0.222 Sum_probs=66.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGA 417 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~ 417 (623)
.||.|+|||+.|..++-+|... ++ ...++|+|.+- ++ +......+.+...-..++... .+
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~-----~~--------~~el~L~Di~~----~k--~~g~a~dl~~~~~~~~~~~v~-~~ 60 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALL-----GV--------AREVVLVDLDR----KL--AQAHAEDILHATPFAHPVWVW-AG 60 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----TC--------CSEEEEECSSH----HH--HHHHHHHHHTTGGGSCCCEEE-EC
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC--------CCEEEEEeCCh----hH--HHHHHHHHHHhHhhcCCeEEE-EC
Confidence 3899999999999988876552 54 25799999851 11 111111221100000000001 12
Q ss_pred CHHHHHhhcCCcEEEeccCCC---CC-----------CCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcc
Q 040403 418 SLVEVVQQVKPDVLLGLSAVG---GL-----------FSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSI 479 (623)
Q Consensus 418 ~L~e~V~~vkptvLIG~S~~~---g~-----------Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~w 479 (623)
+ .++++ +.|++|=+.+.+ |- .-+++++.| .++++.-+|+-.|||. -.+.+-+++.
T Consensus 61 ~-~~a~~--~aD~Vii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i-~~~~p~a~iiv~tNPv---~~~t~~~~k~ 129 (310)
T 2xxj_A 61 S-YGDLE--GARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRV-LEAAPEAVLLVATNPV---DVMTQVAYAL 129 (310)
T ss_dssp C-GGGGT--TEEEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHH-HHHCTTCEEEECSSSH---HHHHHHHHHH
T ss_pred C-HHHhC--CCCEEEECCCCCCCCCcCHHHHHHhhHHHHHHHHHHH-HHHCCCcEEEEecCch---HHHHHHHHHH
Confidence 3 56677 899988444433 32 125577777 7778999999999998 3334444444
No 194
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=77.49 E-value=4.6 Score=41.22 Aligned_cols=94 Identities=18% Similarity=0.224 Sum_probs=53.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGA 417 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~ 417 (623)
.||.|+|+|..|..+|..+... |.. .+++++|++ +.+...++.. .. ......
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~-----G~~--------~~V~~~dr~-----------~~~~~~a~~~-G~---~~~~~~ 85 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRS-----GFK--------GKIYGYDIN-----------PESISKAVDL-GI---IDEGTT 85 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHT-----TCC--------SEEEEECSC-----------HHHHHHHHHT-TS---CSEEES
T ss_pred CEEEEEeeCHHHHHHHHHHHhC-----CCC--------CEEEEEECC-----------HHHHHHHHHC-CC---cchhcC
Confidence 7999999999999999988874 752 368888874 1122222211 00 001124
Q ss_pred CHHH-HHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecC
Q 040403 418 SLVE-VVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMS 463 (623)
Q Consensus 418 ~L~e-~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLS 463 (623)
++.| +++ ++|++| ++..+.. .+++++.++....+.-||.-.+
T Consensus 86 ~~~~~~~~--~aDvVi-lavp~~~-~~~vl~~l~~~l~~~~iv~d~~ 128 (314)
T 3ggo_A 86 SIAKVEDF--SPDFVM-LSSPVRT-FREIAKKLSYILSEDATVTDQG 128 (314)
T ss_dssp CTTGGGGG--CCSEEE-ECSCGGG-HHHHHHHHHHHSCTTCEEEECC
T ss_pred CHHHHhhc--cCCEEE-EeCCHHH-HHHHHHHHhhccCCCcEEEECC
Confidence 5666 666 677777 4433333 4566666522234455665444
No 195
>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A
Probab=77.07 E-value=6.6 Score=37.93 Aligned_cols=90 Identities=16% Similarity=0.217 Sum_probs=56.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGA 417 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~ 417 (623)
.||.|+|+|..|..+|..+... | .+++++|++ .+..+.+++.. . .....
T Consensus 4 m~i~iiG~G~mG~~~a~~l~~~-----g----------~~v~~~~~~----------~~~~~~~~~~~-g-----~~~~~ 52 (259)
T 2ahr_A 4 MKIGIIGVGKMASAIIKGLKQT-----P----------HELIISGSS----------LERSKEIAEQL-A-----LPYAM 52 (259)
T ss_dssp CEEEEECCSHHHHHHHHHHTTS-----S----------CEEEEECSS----------HHHHHHHHHHH-T-----CCBCS
T ss_pred cEEEEECCCHHHHHHHHHHHhC-----C----------CeEEEECCC----------HHHHHHHHHHc-C-----CEeeC
Confidence 4899999999999998877542 5 357888873 11122333210 1 22345
Q ss_pred CHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCC
Q 040403 418 SLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPT 466 (623)
Q Consensus 418 ~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt 466 (623)
++.|+++ ++|++|=+. . ....+++++.+ . +..+|.-+++-.
T Consensus 53 ~~~~~~~--~~D~Vi~~v-~-~~~~~~v~~~l-~---~~~~vv~~~~~~ 93 (259)
T 2ahr_A 53 SHQDLID--QVDLVILGI-K-PQLFETVLKPL-H---FKQPIISMAAGI 93 (259)
T ss_dssp SHHHHHH--TCSEEEECS-C-GGGHHHHHTTS-C---CCSCEEECCTTC
T ss_pred CHHHHHh--cCCEEEEEe-C-cHhHHHHHHHh-c---cCCEEEEeCCCC
Confidence 7888888 789888443 2 33557788777 3 344777665544
No 196
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Probab=76.81 E-value=1.7 Score=40.69 Aligned_cols=98 Identities=11% Similarity=0.106 Sum_probs=58.7
Q ss_pred eEEEeC-cchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhh-hhcccccCCC
Q 040403 339 KIVVAG-AGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVN-EISRQGLWEG 416 (623)
Q Consensus 339 riv~~G-AGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~-~~~~~~~~~~ 416 (623)
||+|+| +|..|..+|..+... | .+++++|++- +..+.+.+... .+... .-..
T Consensus 2 ~i~iiGa~G~~G~~ia~~l~~~-----g----------~~V~~~~r~~----------~~~~~~~~~~~~~~~~~-~~~~ 55 (212)
T 1jay_A 2 RVALLGGTGNLGKGLALRLATL-----G----------HEIVVGSRRE----------EKAEAKAAEYRRIAGDA-SITG 55 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTT-----T----------CEEEEEESSH----------HHHHHHHHHHHHHHSSC-CEEE
T ss_pred eEEEEcCCCHHHHHHHHHHHHC-----C----------CEEEEEeCCH----------HHHHHHHHHhccccccC-CCCh
Confidence 799999 999999999888653 6 2588888731 11112221100 00000 0012
Q ss_pred CCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCC
Q 040403 417 ASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTN 467 (623)
Q Consensus 417 ~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~ 467 (623)
.++.++++ +.|++|=+. .+. ..+++++.+ ....+..+|.-++|+.+
T Consensus 56 ~~~~~~~~--~~D~Vi~~~-~~~-~~~~~~~~l-~~~~~~~~vi~~~~g~~ 101 (212)
T 1jay_A 56 MKNEDAAE--ACDIAVLTI-PWE-HAIDTARDL-KNILREKIVVSPLVPVS 101 (212)
T ss_dssp EEHHHHHH--HCSEEEECS-CHH-HHHHHHHHT-HHHHTTSEEEECCCCEE
T ss_pred hhHHHHHh--cCCEEEEeC-Chh-hHHHHHHHH-HHHcCCCEEEEcCCCcC
Confidence 46888888 689888443 222 356787776 33224679999999774
No 197
>3fys_A Protein DEGV; fatty acid-binding, EDD fold, fatty acid-binding protein; HET: PLM; 2.50A {Bacillus subtilis}
Probab=76.69 E-value=1.1 Score=46.62 Aligned_cols=152 Identities=16% Similarity=0.202 Sum_probs=75.3
Q ss_pred CCcccccccChhhHHHHHhcCCCCCceEEEEecCceeeccCCCCCccccchhhhHHHHHHhcCCCCCCeeeEEeeccCCc
Q 040403 161 PRGMYFSAEDRGEMKSMVYNWPAEQVDMIVVTDGSRILGLGDLGVQGIGIAVGKLDLYVAAAGINPQRVLPIMIDVGTTN 240 (623)
Q Consensus 161 p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI~iGKl~LY~a~gGI~P~~~lPI~LDvGTnN 240 (623)
|||..++--|-|+ |...+..++.+|||.+.= +|.--+. -=||. ++|+.+-+| +
T Consensus 16 ~~~~~~~~~~~~~------~~~~~~Mki~IvTDSt~d------------L~~e~~~----~~~I~---vvPL~v~~~--~ 68 (315)
T 3fys_A 16 PRGSHMASMTGGQ------QMGRGSMNIAVVTDSTAY------------IPKEMRE----QHQIH---MIPLQVVFR--E 68 (315)
T ss_dssp ------------------------CCCEEEEEEGGGC------------CCHHHHH----HHTEE---EECCEEECS--S
T ss_pred cCccccccccchh------hhCcCCCcEEEEEECCCC------------CCHHHHH----hCCeE---EEeEEEEEC--C
Confidence 6666555444433 333333579999998742 2221111 12566 788877774 3
Q ss_pred cccccCcCCCCcCCCCCCchhhhHhHHHHHHHHHH--hCCce-eeecccCCCchHHH-HHHHHhcc-CCccccCcchhHH
Q 040403 241 EKLLKDPLYLGLQEHRLDGDEYVSVIDEFMEAIFT--RWPNV-IVQFEDFQSKWAFK-LLQRYRYK-YRMFNDDVQGTAG 315 (623)
Q Consensus 241 ~~LL~DPlYlG~r~~Rv~g~~Y~~~vdefv~av~~--~~P~~-lIqfEDf~~~nAf~-lL~ryr~~-~~~FNDDiQGTaa 315 (623)
++.+++ . +--.+||.+.+++ ..|++ ...-+|| .++|+ ++++|.+- +.++..-.=||
T Consensus 69 ~~Y~D~-------------~--di~~~efy~~m~~~~~~p~TSqPs~~~~--~~~fe~l~~~~~~Ii~I~iSS~LSGT-- 129 (315)
T 3fys_A 69 ETYREE-------------I--ELDWKSFYEEVKKHNELPTTSQPPIGEL--VALYEELGKSYDAVISIHLSSGISGT-- 129 (315)
T ss_dssp CEEEBT-------------T--TBCHHHHHHHHHTTTCCCEEECCCHHHH--HHHHHHHTTTCSEEEEEESCTTTCSH--
T ss_pred EEEECC-------------C--CCCHHHHHHHHHhCCCCcccCCCCHHHH--HHHHHHHHhcCCcEEEEeCCCcHhHH--
Confidence 333332 0 1125888888875 34764 4444444 22332 11112221 22344444555
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHH--HHHhcCC-Cc
Q 040403 316 VAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKT--MARMLGN-NE 368 (623)
Q Consensus 316 V~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~--m~~~~Gl-s~ 368 (623)
+++.+..... +.+.+|-++-..+++.|..-++..+ |.++ |. |.
T Consensus 130 ------y~sA~~Aa~~---~~~~~I~ViDS~~~s~g~g~lv~~Aa~l~~~-G~~s~ 175 (315)
T 3fys_A 130 ------FSSAAAADSM---VDNIDVYPFDSEISCLAQGFYALKAAELIKN-GASSP 175 (315)
T ss_dssp ------HHHHHHGGGG---CSSCEEEEEECSSCHHHHHHHHHHHHHHHHT-TCCCH
T ss_pred ------HHHHHHHHHh---CCCCCEEEECCchhHHHHHHHHHHHHHHHHc-CCCCH
Confidence 3555555555 6677999999888888887777765 5566 98 76
No 198
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}
Probab=76.67 E-value=0.79 Score=47.37 Aligned_cols=117 Identities=15% Similarity=0.211 Sum_probs=68.3
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC---cccCCCCCCChhhHHhHHHhhhhcccc
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG---LITEDRENIDPDAKPFARKVNEISRQG 412 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G---Li~~~r~~l~~~~~~fA~~~~~~~~~~ 412 (623)
+..||.|+|||..|.++|..+... |+ ..+.++|.+- ....-..+|.+. .++......
T Consensus 7 ~~~kv~ViGaG~vG~~ia~~l~~~-----g~---------~~v~l~D~~~~~~~~~g~a~dl~~~-~~~~~~~~~----- 66 (315)
T 3tl2_A 7 KRKKVSVIGAGFTGATTAFLLAQK-----EL---------ADVVLVDIPQLENPTKGKALDMLEA-SPVQGFDAN----- 66 (315)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-----TC---------CEEEEECCGGGHHHHHHHHHHHHHH-HHHHTCCCC-----
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-----CC---------CeEEEEeccchHHHHHHhhhhHHHh-hhhccCCCE-----
Confidence 457999999999999999988763 64 3689999851 110000011111 112100000
Q ss_pred cCCCCCHHHHHhhcCCcEEEeccCCC---CC-----------CCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhc
Q 040403 413 LWEGASLVEVVQQVKPDVLLGLSAVG---GL-----------FSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFS 478 (623)
Q Consensus 413 ~~~~~~L~e~V~~vkptvLIG~S~~~---g~-----------Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~ 478 (623)
.....+ .++++ +.|++|=+.+.+ |- .-+++++.+ .++++.-+|+-.|||. .....-+++
T Consensus 67 i~~t~d-~~a~~--~aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i-~~~~p~a~vlvvsNPv---d~~t~~~~k 139 (315)
T 3tl2_A 67 IIGTSD-YADTA--DSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDI-AKHSPNAIIVVLTNPV---DAMTYSVFK 139 (315)
T ss_dssp EEEESC-GGGGT--TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHH-HHHCTTCEEEECCSSH---HHHHHHHHH
T ss_pred EEEcCC-HHHhC--CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHhCCCeEEEECCChH---HHHHHHHHH
Confidence 001122 45666 899887554433 32 125777888 7889999999999997 334444444
Q ss_pred c
Q 040403 479 I 479 (623)
Q Consensus 479 w 479 (623)
.
T Consensus 140 ~ 140 (315)
T 3tl2_A 140 E 140 (315)
T ss_dssp H
T ss_pred h
Confidence 3
No 199
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*
Probab=76.43 E-value=0.76 Score=46.92 Aligned_cols=114 Identities=14% Similarity=0.236 Sum_probs=67.4
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEcc--CCcccCCCCCCChhhHHhHHHhhhhc--cccc
Q 040403 339 KIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDA--KGLITEDRENIDPDAKPFARKVNEIS--RQGL 413 (623)
Q Consensus 339 riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~--~GLi~~~r~~l~~~~~~fA~~~~~~~--~~~~ 413 (623)
||+|.|| |..|..++..|+. . |+ ...++|+|. +- ++ +......+.+.. .+. ++..
T Consensus 2 KI~V~GaaG~vG~~l~~~L~~----~-~~--------~~el~L~Di~~~~----~~--~~~~~~dl~~~~-~~~~~~~~i 61 (313)
T 1hye_A 2 KVTIIGASGRVGSATALLLAK----E-PF--------MKDLVLIGREHSI----NK--LEGLREDIYDAL-AGTRSDANI 61 (313)
T ss_dssp EEEEETTTSHHHHHHHHHHHT----C-TT--------CCEEEEEECGGGH----HH--HHHHHHHHHHHH-TTSCCCCEE
T ss_pred EEEEECCCChhHHHHHHHHHh----C-CC--------CCEEEEEcCCCch----hh--hHHHHHHHHHhH-HhcCCCeEE
Confidence 8999999 9999998887764 2 53 246899997 20 00 000011111100 100 0000
Q ss_pred CC-CCCHHHHHhhcCCcEEEeccCCC---CC-----------CCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhc
Q 040403 414 WE-GASLVEVVQQVKPDVLLGLSAVG---GL-----------FSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFS 478 (623)
Q Consensus 414 ~~-~~~L~e~V~~vkptvLIG~S~~~---g~-----------Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~ 478 (623)
.. ..++.++++ +.|++|=+.+.+ |. .+++++++| .+++ +.+|+-.|||. ....+-+++
T Consensus 62 ~~~~d~l~~al~--gaD~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i-~~~~-~~~vlv~SNPv---~~~t~~~~k 134 (313)
T 1hye_A 62 YVESDENLRIID--ESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKI-AEIC-DTKIFVITNPV---DVMTYKALV 134 (313)
T ss_dssp EEEETTCGGGGT--TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHH-HHHC-CCEEEECSSSH---HHHHHHHHH
T ss_pred EeCCcchHHHhC--CCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHH-HHhC-CeEEEEecCcH---HHHHHHHHH
Confidence 01 123778888 899998666644 32 356888888 7778 89999999998 334444444
Q ss_pred c
Q 040403 479 I 479 (623)
Q Consensus 479 w 479 (623)
.
T Consensus 135 ~ 135 (313)
T 1hye_A 135 D 135 (313)
T ss_dssp H
T ss_pred h
Confidence 4
No 200
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=76.25 E-value=2.1 Score=42.86 Aligned_cols=33 Identities=24% Similarity=0.504 Sum_probs=26.9
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
..||.|+|+|..|.++|..|... |. +++++|++
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~-----G~----------~V~~~dr~ 39 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRA-----GL----------STWGADLN 39 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-----TC----------EEEEECSC
T ss_pred CCeEEEECCCHHHHHHHHHHHHC-----CC----------eEEEEECC
Confidence 36899999999999999998874 73 47777764
No 201
>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}
Probab=76.17 E-value=35 Score=34.91 Aligned_cols=106 Identities=14% Similarity=0.179 Sum_probs=65.6
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWE 415 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~ 415 (623)
...+++|+|+|..|-.+++.+... .+ .++|+++|+. + ...+...|.+.. ... ...
T Consensus 120 ~~~~v~iIGaG~~a~~~~~al~~~----~~---------~~~V~v~~r~------~--a~~la~~l~~~~-g~~---~~~ 174 (313)
T 3hdj_A 120 RSSVLGLFGAGTQGAEHAAQLSAR----FA---------LEAILVHDPY------A--SPEILERIGRRC-GVP---ARM 174 (313)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHH----SC---------CCEEEEECTT------C--CHHHHHHHHHHH-TSC---EEE
T ss_pred CCcEEEEECccHHHHHHHHHHHHh----CC---------CcEEEEECCc------H--HHHHHHHHHHhc-CCe---EEE
Confidence 467999999999988887776653 13 2679999986 1 112222222110 100 122
Q ss_pred CCCHHHHHhhcCCcEEEeccCCC-CCCCHHHHHHcccCCCCCCEEEecCC--CCCCCCCCHHHHh
Q 040403 416 GASLVEVVQQVKPDVLLGLSAVG-GLFSKEVLEAMRGSTSTRPAIFAMSN--PTNNAECTPEEAF 477 (623)
Q Consensus 416 ~~~L~e~V~~vkptvLIG~S~~~-g~Ft~evv~~M~a~~~erPIIFaLSN--Pt~~~E~tpeda~ 477 (623)
. ++.|+++ +.|++|-+.... -.|..+ .+ .+..+|..++. |. +.|+.++-..
T Consensus 175 ~-~~~eav~--~aDIVi~aT~s~~pvl~~~---~l----~~G~~V~~vGs~~p~-~~El~~~~~~ 228 (313)
T 3hdj_A 175 A-APADIAA--QADIVVTATRSTTPLFAGQ---AL----RAGAFVGAIGSSLPH-TRELDDEALR 228 (313)
T ss_dssp C-CHHHHHH--HCSEEEECCCCSSCSSCGG---GC----CTTCEEEECCCSSTT-CCCCCHHHHH
T ss_pred e-CHHHHHh--hCCEEEEccCCCCcccCHH---Hc----CCCcEEEECCCCCCc-hhhcCHHHHh
Confidence 4 8999998 799999765432 233332 23 56678888875 44 5788887543
No 202
>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}
Probab=76.07 E-value=16 Score=37.41 Aligned_cols=87 Identities=20% Similarity=0.274 Sum_probs=49.2
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhh-h-hccccc
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVN-E-ISRQGL 413 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~-~-~~~~~~ 413 (623)
.+++|+|+|||..|...+++.... |. ++++.+|+. +.+..+|+.-. + .-+ ..
T Consensus 193 ~g~~VlV~GaG~vG~~a~q~a~~~-----Ga---------~~Vi~~~~~-----------~~~~~~a~~lGa~~vi~-~~ 246 (378)
T 3uko_A 193 PGSNVAIFGLGTVGLAVAEGAKTA-----GA---------SRIIGIDID-----------SKKYETAKKFGVNEFVN-PK 246 (378)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHH-----TC---------SCEEEECSC-----------TTHHHHHHTTTCCEEEC-GG
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-----CC---------CeEEEEcCC-----------HHHHHHHHHcCCcEEEc-cc
Confidence 578999999998776665555432 74 468888752 34555664310 0 000 00
Q ss_pred CCCCCHHHHHhhc---CCcEEEeccCCCCCCCHHHHHHc
Q 040403 414 WEGASLVEVVQQV---KPDVLLGLSAVGGLFSKEVLEAM 449 (623)
Q Consensus 414 ~~~~~L~e~V~~v---kptvLIG~S~~~g~Ft~evv~~M 449 (623)
....++.+.|+.. +.|+.|=+++.+.. .++.++.+
T Consensus 247 ~~~~~~~~~i~~~~~gg~D~vid~~g~~~~-~~~~~~~l 284 (378)
T 3uko_A 247 DHDKPIQEVIVDLTDGGVDYSFECIGNVSV-MRAALECC 284 (378)
T ss_dssp GCSSCHHHHHHHHTTSCBSEEEECSCCHHH-HHHHHHTB
T ss_pred cCchhHHHHHHHhcCCCCCEEEECCCCHHH-HHHHHHHh
Confidence 1134566666644 57888887753222 24445554
No 203
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A
Probab=76.01 E-value=10 Score=38.97 Aligned_cols=217 Identities=12% Similarity=0.080 Sum_probs=119.2
Q ss_pred Cce-eeecccCCCchHHH-HHH---HHhccCCccccC----cchhHHHHHHHHHHHHHHh---------C----CCCCCC
Q 040403 278 PNV-IVQFEDFQSKWAFK-LLQ---RYRYKYRMFNDD----VQGTAGVAVAGLLGAVRAQ---------G----RSMIDF 335 (623)
Q Consensus 278 P~~-lIqfEDf~~~nAf~-lL~---ryr~~~~~FNDD----iQGTaaV~lAgll~A~r~~---------g----~~~~~l 335 (623)
|+. .|+.-=.+..|-.. +-. -....+++.|-- -+..|=-+++.+|+..|-. | .+..+|
T Consensus 58 ~~Lk~I~~~~aG~d~i~d~~~a~~~~~~~gi~v~~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~l 137 (315)
T 3pp8_A 58 RRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDYQALKNQALWKPLPEYTR 137 (315)
T ss_dssp CCCSEEEESSSCCHHHHHHHHHCTTSSCTTSCEEEC--CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCCCCS
T ss_pred CCceEEEECCEecccccchhhhhhhhhcCCCEEEEcCCCCccHHHHHHHHHHHHHHHhCChHHHHHHHhcccCCCCCCCc
Confidence 664 66655555554323 221 122345555421 1345556788888887631 1 111238
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWE 415 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~ 415 (623)
.+.+|.|+|.|..|..+|+.+... |+ +++.+|+..- ...... .+ ..
T Consensus 138 ~g~tvGIiG~G~IG~~vA~~l~~~-----G~----------~V~~~dr~~~------~~~~~~-~~------------~~ 183 (315)
T 3pp8_A 138 EEFSVGIMGAGVLGAKVAESLQAW-----GF----------PLRCWSRSRK------SWPGVE-SY------------VG 183 (315)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTT-----TC----------CEEEEESSCC------CCTTCE-EE------------ES
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHC-----CC----------EEEEEcCCch------hhhhhh-hh------------cc
Confidence 999999999999999999988764 74 4777887421 111100 00 01
Q ss_pred CCCHHHHHhhcCCcEEEecc----CCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccCCcEEEecCCC
Q 040403 416 GASLVEVVQQVKPDVLLGLS----AVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGSP 491 (623)
Q Consensus 416 ~~~L~e~V~~vkptvLIG~S----~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~Grai~AtGsP 491 (623)
..+|.|+++ +.|+++=.- ..-+.|+++.++.| .+..++.=.|.-..--|---.+|++ +|+.-.|.=-=
T Consensus 184 ~~~l~ell~--~aDiV~l~~Plt~~t~~li~~~~l~~m----k~gailIN~aRG~~vd~~aL~~aL~--~g~i~gA~lDV 255 (315)
T 3pp8_A 184 REELRAFLN--QTRVLINLLPNTAQTVGIINSELLDQL----PDGAYVLNLARGVHVQEADLLAALD--SGKLKGAMLDV 255 (315)
T ss_dssp HHHHHHHHH--TCSEEEECCCCCGGGTTCBSHHHHTTS----CTTEEEEECSCGGGBCHHHHHHHHH--HTSEEEEEESC
T ss_pred cCCHHHHHh--hCCEEEEecCCchhhhhhccHHHHhhC----CCCCEEEECCCChhhhHHHHHHHHH--hCCccEEEcCC
Confidence 135888888 789888431 23478999999999 6777888777744223333334443 35543332111
Q ss_pred CCccccCCCeeccCCCCccccchhHHHHHHHHcCCcccCHHHHHHHHHHHHccc
Q 040403 492 FKDVDLGNGHIGHCNQGNNMYLFPGVGLGTLLSGSRIISDGMLQAAAECLAEYM 545 (623)
Q Consensus 492 F~pv~~~~G~~~~p~Q~NN~yiFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v 545 (623)
|.+-..|.+. .--+..|+.+-|=++- .+. .+.|...+++-|....
T Consensus 256 ~~~EPl~~~~--pL~~~~nvilTPHia~------~t~-~~~~~~~~~~ni~~~~ 300 (315)
T 3pp8_A 256 FSQEPLPQES--PLWRHPRVAMTPHIAA------VTR-PAEAIDYISRTITQLE 300 (315)
T ss_dssp CSSSSCCTTC--GGGGCTTEEECSSCSS------CCC-HHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCC--hhhcCCCEEECCCCCc------ccH-HHHHHHHHHHHHHHHH
Confidence 2111111111 1123457777777652 222 2456666666666554
No 204
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}
Probab=75.97 E-value=3.4 Score=41.35 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=26.5
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
..||.|+|+|..|.++|..|... |. +++++|++
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~-----G~----------~V~~~dr~ 47 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEW-----PG----------GVTVYDIR 47 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTS-----TT----------CEEEECSS
T ss_pred CCeEEEECcCHHHHHHHHHHHHC-----CC----------eEEEEeCC
Confidence 35899999999999999988764 63 47777874
No 205
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=75.40 E-value=10 Score=38.15 Aligned_cols=64 Identities=20% Similarity=0.307 Sum_probs=38.9
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCC
Q 040403 311 QGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITED 390 (623)
Q Consensus 311 QGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~ 390 (623)
++...-.++..+.+.+..+.. .+++++|.|||..|...+.++.. .|. +.++.+|+
T Consensus 139 ~aa~l~~~~~~~~~~~~~~~~----~g~~VlV~GaG~vG~~aiq~ak~-----~G~---------~~vi~~~~------- 193 (346)
T 4a2c_A 139 DGAFIEPITVGLHAFHLAQGC----ENKNVIIIGAGTIGLLAIQCAVA-----LGA---------KSVTAIDI------- 193 (346)
T ss_dssp GGGGHHHHHHHHHHHHHTTCC----TTSEEEEECCSHHHHHHHHHHHH-----TTC---------SEEEEEES-------
T ss_pred HHHhchHHHHHHHHHHHhccC----CCCEEEEECCCCcchHHHHHHHH-----cCC---------cEEEEEec-------
Confidence 333333344445556666555 67899999999887555443333 374 56777776
Q ss_pred CCCCChhhHHhHH
Q 040403 391 RENIDPDAKPFAR 403 (623)
Q Consensus 391 r~~l~~~~~~fA~ 403 (623)
++.+..+|+
T Consensus 194 ----~~~k~~~a~ 202 (346)
T 4a2c_A 194 ----SSEKLALAK 202 (346)
T ss_dssp ----CHHHHHHHH
T ss_pred ----hHHHHHHHH
Confidence 345666665
No 206
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Probab=75.07 E-value=4.5 Score=39.64 Aligned_cols=98 Identities=18% Similarity=0.239 Sum_probs=55.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGA 417 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~ 417 (623)
.||.|+|+|..|..+|..+... |.. .+++++|++ +.+...++.. ... .....
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~-----g~~--------~~V~~~d~~-----------~~~~~~~~~~-g~~---~~~~~ 53 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRS-----GFK--------GKIYGYDIN-----------PESISKAVDL-GII---DEGTT 53 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT-----TCC--------SEEEEECSC-----------HHHHHHHHHT-TSC---SEEES
T ss_pred cEEEEEecCHHHHHHHHHHHhc-----CCC--------cEEEEEeCC-----------HHHHHHHHHC-CCc---ccccC
Confidence 3799999999999999988763 741 368888874 1122222210 100 00123
Q ss_pred CHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCC
Q 040403 418 SLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPT 466 (623)
Q Consensus 418 ~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt 466 (623)
++.++++. ++|++| ++. +...+.++++.++....+..+|.-+||-.
T Consensus 54 ~~~~~~~~-~aDvVi-lav-p~~~~~~v~~~l~~~l~~~~iv~~~~~~~ 99 (281)
T 2g5c_A 54 SIAKVEDF-SPDFVM-LSS-PVRTFREIAKKLSYILSEDATVTDQGSVK 99 (281)
T ss_dssp CGGGGGGT-CCSEEE-ECS-CHHHHHHHHHHHHHHSCTTCEEEECCSCC
T ss_pred CHHHHhcC-CCCEEE-EcC-CHHHHHHHHHHHHhhCCCCcEEEECCCCc
Confidence 56666642 577777 332 22245666665521224556777777744
No 207
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=74.47 E-value=2.4 Score=36.39 Aligned_cols=35 Identities=20% Similarity=0.423 Sum_probs=26.1
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
++..+|+|+|+|..|..+++.+... |. +++++|++
T Consensus 4 ~~~~~v~I~G~G~iG~~~a~~l~~~-----g~----------~v~~~d~~ 38 (144)
T 2hmt_A 4 IKNKQFAVIGLGRFGGSIVKELHRM-----GH----------EVLAVDIN 38 (144)
T ss_dssp --CCSEEEECCSHHHHHHHHHHHHT-----TC----------CCEEEESC
T ss_pred CcCCcEEEECCCHHHHHHHHHHHHC-----CC----------EEEEEeCC
Confidence 5667899999999999998887653 62 47778764
No 208
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}
Probab=74.17 E-value=12 Score=39.04 Aligned_cols=76 Identities=18% Similarity=0.313 Sum_probs=44.0
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWE 415 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~ 415 (623)
.+++|+|+|||..|...+++... .|. ++++.+|+ ++.+..+++.-.- ..--...
T Consensus 213 ~g~~VlV~GaG~vG~~aiqlak~-----~Ga---------~~Vi~~~~-----------~~~~~~~~~~lGa-~~vi~~~ 266 (404)
T 3ip1_A 213 PGDNVVILGGGPIGLAAVAILKH-----AGA---------SKVILSEP-----------SEVRRNLAKELGA-DHVIDPT 266 (404)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH-----TTC---------SEEEEECS-----------CHHHHHHHHHHTC-SEEECTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-----cCC---------CEEEEECC-----------CHHHHHHHHHcCC-CEEEcCC
Confidence 67899999998777655544433 374 46888776 3456667653210 0000112
Q ss_pred CCCHHHHHhhc----CCcEEEeccCC
Q 040403 416 GASLVEVVQQV----KPDVLLGLSAV 437 (623)
Q Consensus 416 ~~~L~e~V~~v----kptvLIG~S~~ 437 (623)
..++.+.|+.. +.|++|-+++.
T Consensus 267 ~~~~~~~i~~~t~g~g~D~vid~~g~ 292 (404)
T 3ip1_A 267 KENFVEAVLDYTNGLGAKLFLEATGV 292 (404)
T ss_dssp TSCHHHHHHHHTTTCCCSEEEECSSC
T ss_pred CCCHHHHHHHHhCCCCCCEEEECCCC
Confidence 23566655543 68888877753
No 209
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=74.00 E-value=8.5 Score=39.62 Aligned_cols=110 Identities=19% Similarity=0.223 Sum_probs=63.5
Q ss_pred CcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCccc
Q 040403 309 DVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLIT 388 (623)
Q Consensus 309 DiQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~ 388 (623)
+.++.....++..+.+++..+.+ .+++|+|.|||..|...+++... .|. ++++.+|+
T Consensus 159 ~~~aal~~~~~ta~~~l~~~~~~----~g~~VlV~GaG~vG~~aiqlak~-----~Ga---------~~Vi~~~~----- 215 (370)
T 4ej6_A 159 PVHGAFCEPLACCLHGVDLSGIK----AGSTVAILGGGVIGLLTVQLARL-----AGA---------TTVILSTR----- 215 (370)
T ss_dssp TTGGGGHHHHHHHHHHHHHHTCC----TTCEEEEECCSHHHHHHHHHHHH-----TTC---------SEEEEECS-----
T ss_pred HHHHhhhhHHHHHHHHHHhcCCC----CCCEEEEECCCHHHHHHHHHHHH-----cCC---------CEEEEECC-----
Confidence 34454444566667777777766 57899999998777655444433 374 46888876
Q ss_pred CCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhh---c---CCcEEEeccCCCCCCCHHHHHHc
Q 040403 389 EDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQ---V---KPDVLLGLSAVGGLFSKEVLEAM 449 (623)
Q Consensus 389 ~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~---v---kptvLIG~S~~~g~Ft~evv~~M 449 (623)
++.+..+++.-.- ..-......++.+.++. . +.|++|=+++.+ ..-++.++.+
T Consensus 216 ------~~~~~~~a~~lGa-~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~~G~~-~~~~~~~~~l 274 (370)
T 4ej6_A 216 ------QATKRRLAEEVGA-TATVDPSAGDVVEAIAGPVGLVPGGVDVVIECAGVA-ETVKQSTRLA 274 (370)
T ss_dssp ------CHHHHHHHHHHTC-SEEECTTSSCHHHHHHSTTSSSTTCEEEEEECSCCH-HHHHHHHHHE
T ss_pred ------CHHHHHHHHHcCC-CEEECCCCcCHHHHHHhhhhccCCCCCEEEECCCCH-HHHHHHHHHh
Confidence 3456667653210 00001123467777764 1 578888877532 2224555555
No 210
>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}
Probab=73.95 E-value=19 Score=37.31 Aligned_cols=119 Identities=16% Similarity=0.125 Sum_probs=78.0
Q ss_pred cCCccccCcch---hHHHHHHHHHHHHHH-------------------hCCCCCCCCCceEEEeCcchHHHHHHHHHHHH
Q 040403 302 KYRMFNDDVQG---TAGVAVAGLLGAVRA-------------------QGRSMIDFPKQKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 302 ~~~~FNDDiQG---TaaV~lAgll~A~r~-------------------~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~ 359 (623)
.|.+.|-.--. +|=-+++.+|+..|- .|.. |.+.++.|+|.|..|..+|+.+...
T Consensus 87 gI~v~n~p~~~~~~vAE~~~~l~L~~~r~~~~~~~~~~~~~~~~~~~~~~~~---l~g~tvGIiG~G~IG~~va~~~~~f 163 (334)
T 3kb6_A 87 GILVTHIPAYSPESVAEHTFAMILTLVKRLKRIEDRVKKLNFSQDSEILARE---LNRLTLGVIGTGRIGSRVAMYGLAF 163 (334)
T ss_dssp TCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCGGGCBCC---GGGSEEEEECCSHHHHHHHHHHHHT
T ss_pred CCEEEECCCcCcHHHHHHHHHHHHHHhhccccccccccccccccccccccce---ecCcEEEEECcchHHHHHHHhhccc
Confidence 46666653322 344467777776542 2344 8899999999999999999888764
Q ss_pred HHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEec----c
Q 040403 360 MARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGL----S 435 (623)
Q Consensus 360 m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~----S 435 (623)
|+ +++.+|+.. . .... .. .....+|.|+++ +.|+++=. .
T Consensus 164 -----g~----------~v~~~d~~~---------~---~~~~---~~-----~~~~~~l~ell~--~sDivslh~Plt~ 206 (334)
T 3kb6_A 164 -----GM----------KVLCYDVVK---------R---EDLK---EK-----GCVYTSLDELLK--ESDVISLHVPYTK 206 (334)
T ss_dssp -----TC----------EEEEECSSC---------C---HHHH---HT-----TCEECCHHHHHH--HCSEEEECCCCCT
T ss_pred -----Cc----------eeeecCCcc---------c---hhhh---hc-----CceecCHHHHHh--hCCEEEEcCCCCh
Confidence 75 466777631 0 1111 01 123457999998 78888742 2
Q ss_pred CCCCCCCHHHHHHcccCCCCCCEEEecCC
Q 040403 436 AVGGLFSKEVLEAMRGSTSTRPAIFAMSN 464 (623)
Q Consensus 436 ~~~g~Ft~evv~~M~a~~~erPIIFaLSN 464 (623)
..-|.|+++.++.| .+..++.=.|.
T Consensus 207 ~T~~li~~~~l~~m----k~~a~lIN~aR 231 (334)
T 3kb6_A 207 ETHHMINEERISLM----KDGVYLINTAR 231 (334)
T ss_dssp TTTTCBCHHHHHHS----CTTEEEEECSC
T ss_pred hhccCcCHHHHhhc----CCCeEEEecCc
Confidence 23589999999999 56667765554
No 211
>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*
Probab=73.77 E-value=7.7 Score=39.74 Aligned_cols=116 Identities=14% Similarity=0.206 Sum_probs=66.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGAS 418 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~ 418 (623)
||.|+|||..|..+|-+|... |+ ...+.|+|..-=... .....+.+..........-...+
T Consensus 2 KV~IiGaG~VG~~~a~~l~~~-----~~--------~~el~L~Di~~~~~~------G~a~DL~h~~~~~~~~~~i~~~~ 62 (294)
T 2x0j_A 2 KLGFVGAGRVGSTSAFTCLLN-----LD--------VDEIALVDIAEDLAV------GEAMDLAHAAAGIDKYPKIVGGA 62 (294)
T ss_dssp EEEEECCSHHHHHHHHHHHHH-----SC--------CSEEEEECSSHHHHH------HHHHHHHHHHGGGTCCCEEEEES
T ss_pred EEEEECcCHHHHHHHHHHHhC-----CC--------CCEEEEEeCCCCcch------hhhhhhhcccccCCCCCeEecCC
Confidence 799999999999888877653 65 246999997421000 01111111000000000000112
Q ss_pred HHHHHhhcCCcEEEeccCCC---CC-----------CCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcc
Q 040403 419 LVEVVQQVKPDVLLGLSAVG---GL-----------FSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSI 479 (623)
Q Consensus 419 L~e~V~~vkptvLIG~S~~~---g~-----------Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~w 479 (623)
-.++++ +.|++|=+.|.| |- .-+++++.+ +++++..||+-.|||- ..+..-+++.
T Consensus 63 d~~~~~--~aDvVvitAG~prkpGmtR~dLl~~Na~I~~~i~~~i-~~~~p~aivlvvsNPv---d~~t~i~~k~ 131 (294)
T 2x0j_A 63 DYSLLK--GSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKI-VENAPESKILVVTNPM---DVMTYIMWKE 131 (294)
T ss_dssp CGGGGT--TCSEEEECCCCCCCSSSCHHHHHHHHHHHHHHHHHHH-HTTSTTCEEEECSSSH---HHHHHHHHHH
T ss_pred CHHHhC--CCCEEEEecCCCCCCCCchHHHHHHHHHHHHHHHHHH-HhcCCceEEEEecCcc---hhhHHhhHHH
Confidence 234566 899998665544 32 114677888 8999999999999997 3444445554
No 212
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=73.76 E-value=3.7 Score=44.47 Aligned_cols=92 Identities=10% Similarity=0.087 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHhCCceeeecccCCCchHHHHHHHHhc-cCCcc--ccCcchhHHHHHHHHHHHHHHhCC-----CCCCCC
Q 040403 265 VIDEFMEAIFTRWPNVIVQFEDFQSKWAFKLLQRYRY-KYRMF--NDDVQGTAGVAVAGLLGAVRAQGR-----SMIDFP 336 (623)
Q Consensus 265 ~vdefv~av~~~~P~~lIqfEDf~~~nAf~lL~ryr~-~~~~F--NDDiQGTaaV~lAgll~A~r~~g~-----~~~~l~ 336 (623)
.+..+++.+...+|++-+.--|. ..-.++-++|.- .+|++ |+..-+.+.....-|+..+..... +...-.
T Consensus 134 ~~~~~l~~~a~~~~~v~~~~vd~--~~~~~~~~~~~i~svPt~~i~g~~~~~G~~~~~~l~~~l~~~~~~~~~~~~~~~~ 211 (521)
T 1hyu_A 134 DVVQALNLMAVLNPRIKHTAIDG--GTFQNEITERNVMGVPAVFVNGKEFGQGRMTLTEIVAKVDTGAEKRAAEALNKRD 211 (521)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEET--TTCHHHHHHTTCCSSSEEEETTEEEEESCCCHHHHHHHHCCSSCCHHHHHHHTSC
T ss_pred HHHHHHHHHHhHcCceEEEEEec--hhhHHHHHHhCCCccCEEEECCEEEecCCCCHHHHHHHHhhcccccccccccccC
Confidence 35556666666778643322233 334567788865 46644 666666676666666655432210 000023
Q ss_pred CceEEEeCcchHHHHHHHHHHH
Q 040403 337 KQKIVVAGAGSAGLGVLNAARK 358 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~ 358 (623)
..+|+|+|||.||+..|..+..
T Consensus 212 ~~dVvIIGgG~AGl~aA~~la~ 233 (521)
T 1hyu_A 212 AYDVLIVGSGPAGAAAAVYSAR 233 (521)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH
T ss_pred cccEEEECCcHHHHHHHHHHHh
Confidence 5689999999999999988766
No 213
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Probab=73.74 E-value=1.9 Score=45.13 Aligned_cols=118 Identities=10% Similarity=0.065 Sum_probs=69.9
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCC-CCCCChhhHHhHHHhhhhcccccC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITED-RENIDPDAKPFARKVNEISRQGLW 414 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~-r~~l~~~~~~fA~~~~~~~~~~~~ 414 (623)
...||.|+|||..|.++|..+... |+ ...+.++|.+-=..++ ..+|.+. ..|... .. ..
T Consensus 20 ~~~kV~ViGaG~vG~~~a~~la~~-----g~--------~~ev~L~Di~~~~~~g~a~DL~~~-~~~~~~-~~-----i~ 79 (330)
T 3ldh_A 20 SYNKITVVGCDAVGMADAISVLMK-----DL--------ADEVALVDVMEDKLKGEMMDLEHG-SLFLHT-AK-----IV 79 (330)
T ss_dssp CCCEEEEESTTHHHHHHHHHHHHH-----CC--------CSEEEEECSCHHHHHHHHHHHHHH-GGGSCC-SE-----EE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-----CC--------CCeEEEEECCHHHHHHHHHHhhhh-hhcccC-Ce-----EE
Confidence 347999999999999999988875 75 2469999973100000 0011110 111100 00 01
Q ss_pred CCCCHHHHHhhcCCcEEEeccC---CCCC-----------CCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhccc
Q 040403 415 EGASLVEVVQQVKPDVLLGLSA---VGGL-----------FSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIV 480 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLIG~S~---~~g~-----------Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT 480 (623)
...++.+ ++ +.|++|=+.+ .+|- .-+++++.+ .++++.-+|+-.|||. .....-+++.+
T Consensus 80 ~t~d~~~-~~--daDiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I-~k~~P~a~ilvvtNPv---di~t~~~~k~s 152 (330)
T 3ldh_A 80 SGKDYSV-SA--GSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNI-VKHSPDCLKELHPELG---TDKNKQDWKLS 152 (330)
T ss_dssp EESSSCS-CS--SCSEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHH-HHHCTTCEEEECSSSH---HHHHHHHHHHH
T ss_pred EcCCHHH-hC--CCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHH-HhhCCCceEEeCCCcc---HHHHHHHHHHh
Confidence 1234544 55 8999883333 3332 125677788 7889999999999997 45555566654
No 214
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1
Probab=73.57 E-value=20 Score=36.89 Aligned_cols=120 Identities=18% Similarity=0.224 Sum_probs=79.5
Q ss_pred cCCccccCcch---hHHHHHHHHHHHHHH-------------------hCCCCCCCCCceEEEeCcchHHHHHHHHHHHH
Q 040403 302 KYRMFNDDVQG---TAGVAVAGLLGAVRA-------------------QGRSMIDFPKQKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 302 ~~~~FNDDiQG---TaaV~lAgll~A~r~-------------------~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~ 359 (623)
.+.+.|---.. +|=-+++.+|+..|- .|.. |.+.+|.|+|.|..|..+|+.+...
T Consensus 91 gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~---l~g~~vgIiG~G~IG~~~A~~l~~~ 167 (333)
T 1dxy_A 91 GIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKE---LGQQTVGVMGTGHIGQVAIKLFKGF 167 (333)
T ss_dssp TCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCCCC---GGGSEEEEECCSHHHHHHHHHHHHT
T ss_pred CCEEEeCCCCCchHHHHHHHHHHHHHhhhHHHHHHHHHcCCcccccCCCccC---CCCCEEEEECcCHHHHHHHHHHHHC
Confidence 46666643223 344478888877651 2334 8999999999999999999988764
Q ss_pred HHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccC---
Q 040403 360 MARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSA--- 436 (623)
Q Consensus 360 m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~--- 436 (623)
|+ +++.+|+..- . ... .++ ...+|.|+++ +.|+++=+--
T Consensus 168 -----G~----------~V~~~d~~~~----~-~~~----~~~------------~~~~l~ell~--~aDvV~~~~P~~~ 209 (333)
T 1dxy_A 168 -----GA----------KVIAYDPYPM----K-GDH----PDF------------DYVSLEDLFK--QSDVIDLHVPGIE 209 (333)
T ss_dssp -----TC----------EEEEECSSCC----S-SCC----TTC------------EECCHHHHHH--HCSEEEECCCCCG
T ss_pred -----CC----------EEEEECCCcc----h-hhH----hcc------------ccCCHHHHHh--cCCEEEEcCCCch
Confidence 74 5788887521 0 010 011 1136888888 7888885421
Q ss_pred -CCCCCCHHHHHHcccCCCCCCEEEecCCCC
Q 040403 437 -VGGLFSKEVLEAMRGSTSTRPAIFAMSNPT 466 (623)
Q Consensus 437 -~~g~Ft~evv~~M~a~~~erPIIFaLSNPt 466 (623)
..+.|+++.++.| .+.-++.=.|.-.
T Consensus 210 ~t~~li~~~~l~~m----k~ga~lIn~srg~ 236 (333)
T 1dxy_A 210 QNTHIINEAAFNLM----KPGAIVINTARPN 236 (333)
T ss_dssp GGTTSBCHHHHHHS----CTTEEEEECSCTT
T ss_pred hHHHHhCHHHHhhC----CCCcEEEECCCCc
Confidence 2478899999999 5666777777643
No 215
>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*
Probab=73.23 E-value=2.8 Score=42.45 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=27.1
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+.+++|+|||.+|.+|+..|... | .+|+++++.
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~-----G----------~~v~V~nRt 150 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQ-----G----------LQVSVLNRS 150 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-----T----------CEEEEECSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-----C----------CEEEEEeCC
Confidence 67999999999999988887764 6 458888884
No 216
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=72.92 E-value=3 Score=41.59 Aligned_cols=35 Identities=23% Similarity=0.507 Sum_probs=28.5
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
..+|+|+|||.||+..|..|... |. .++.++|+..
T Consensus 4 ~~~vvIIGaG~aGl~aA~~l~~~-----g~---------~~v~lie~~~ 38 (369)
T 3d1c_A 4 HHKVAIIGAGAAGIGMAITLKDF-----GI---------TDVIILEKGT 38 (369)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT-----TC---------CCEEEECSSS
T ss_pred cCcEEEECcCHHHHHHHHHHHHc-----CC---------CcEEEEecCC
Confidence 46899999999999999988653 63 2688999874
No 217
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Probab=72.48 E-value=2.7 Score=43.63 Aligned_cols=116 Identities=16% Similarity=0.189 Sum_probs=68.1
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCC-CCCCChhhHHhHHHhhhhcccccCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITED-RENIDPDAKPFARKVNEISRQGLWE 415 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~-r~~l~~~~~~fA~~~~~~~~~~~~~ 415 (623)
-.||.|+|||..|..+|..|... |+ ...+.++|.+-=..++ ..||.+. .+|.. .. ..-
T Consensus 5 ~~kI~ViGaG~vG~~~a~~l~~~-----~~--------~~~l~l~D~~~~k~~g~a~DL~~~-~~~~~--~~-----v~i 63 (326)
T 3pqe_A 5 VNKVALIGAGFVGSSYAFALINQ-----GI--------TDELVVIDVNKEKAMGDVMDLNHG-KAFAP--QP-----VKT 63 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH-----TC--------CSEEEEECSCHHHHHHHHHHHHHT-GGGSS--SC-----CEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-----CC--------CceEEEEecchHHHHHHHHHHHhc-ccccc--CC-----eEE
Confidence 46999999999999999988764 65 2479999973000000 0001111 11110 00 000
Q ss_pred CCCHHHHHhhcCCcEEEeccCC---CCC-----C------CHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcc
Q 040403 416 GASLVEVVQQVKPDVLLGLSAV---GGL-----F------SKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSI 479 (623)
Q Consensus 416 ~~~L~e~V~~vkptvLIG~S~~---~g~-----F------t~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~w 479 (623)
..+-.++++ +.|++|=+.+. +|- | -+++++.+ .++++.-+|+-.|||.. +..+-+++.
T Consensus 64 ~~~~~~a~~--~aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I-~~~~p~a~vlvvtNPvd---~~t~~~~k~ 135 (326)
T 3pqe_A 64 SYGTYEDCK--DADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEV-MASGFDGIFLVATNPVD---ILTYATWKF 135 (326)
T ss_dssp EEECGGGGT--TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHH-HHTTCCSEEEECSSSHH---HHHHHHHHH
T ss_pred EeCcHHHhC--CCCEEEEecccCCCCCccHHHHHHHHHHHHHHHHHHH-HHhcCCeEEEEcCChHH---HHHHHHHHh
Confidence 112235666 78988744443 332 1 25777888 78899999999999983 444555554
No 218
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=72.20 E-value=7.2 Score=39.76 Aligned_cols=49 Identities=31% Similarity=0.428 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEcc
Q 040403 317 AVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDA 383 (623)
Q Consensus 317 ~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~ 383 (623)
.++..+.|++..+.+ .+++|+|+|||+.|...+++... .|. ++++.+|+
T Consensus 156 ~~~ta~~al~~~~~~----~g~~VlV~GaG~vG~~aiqlak~-----~Ga---------~~Vi~~~~ 204 (356)
T 1pl8_A 156 PLSVGIHACRRGGVT----LGHKVLVCGAGPIGMVTLLVAKA-----MGA---------AQVVVTDL 204 (356)
T ss_dssp HHHHHHHHHHHHTCC----TTCEEEEECCSHHHHHHHHHHHH-----TTC---------SEEEEEES
T ss_pred hHHHHHHHHHhcCCC----CCCEEEEECCCHHHHHHHHHHHH-----cCC---------CEEEEECC
Confidence 344455666666655 57899999998777666554443 273 46888876
No 219
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...
Probab=71.81 E-value=8.8 Score=39.92 Aligned_cols=119 Identities=16% Similarity=0.229 Sum_probs=70.4
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccc-c
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQG-L 413 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~-~ 413 (623)
....||.|+|||..|.++|..|+.. |+ ...+.|+|.+- ++ +......+.+.. .+..-. .
T Consensus 17 ~~~~kV~ViGaG~vG~~~a~~l~~~-----~~--------~~el~L~Di~~----~~--~~g~a~DL~~~~-~~~~~~~i 76 (331)
T 4aj2_A 17 VPQNKITVVGVGAVGMACAISILMK-----DL--------ADELALVDVIE----DK--LKGEMMDLQHGS-LFLKTPKI 76 (331)
T ss_dssp CCSSEEEEECCSHHHHHHHHHHHHT-----TC--------CSEEEEECSCH----HH--HHHHHHHHHHTG-GGCSCCEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhC-----CC--------CceEEEEeCCh----HH--HHHHHHhhhhhh-hccCCCeE
Confidence 4567999999999999999888763 64 24699999741 00 000011111000 000000 0
Q ss_pred CCCCCHHHHHhhcCCcEEEeccCC---CCC-----C------CHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcc
Q 040403 414 WEGASLVEVVQQVKPDVLLGLSAV---GGL-----F------SKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSI 479 (623)
Q Consensus 414 ~~~~~L~e~V~~vkptvLIG~S~~---~g~-----F------t~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~w 479 (623)
....+.. +++ +.|++|=+.+. +|- | -+++.+.| .++++.-+|+-.|||. .+..+-+++.
T Consensus 77 ~~~~d~~-~~~--~aDiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i-~~~~p~a~vlvvtNPv---di~t~~~~k~ 149 (331)
T 4aj2_A 77 VSSKDYS-VTA--NSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNV-VKYSPQCKLLIVSNPV---DILTYVAWKI 149 (331)
T ss_dssp EECSSGG-GGT--TEEEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHH-HHHCTTCEEEECSSSH---HHHHHHHHHH
T ss_pred EEcCCHH-HhC--CCCEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHH-HHHCCCeEEEEecChH---HHHHHHHHHH
Confidence 1123444 466 89988744443 332 1 25677888 7889999999999998 3445556555
Q ss_pred c
Q 040403 480 V 480 (623)
Q Consensus 480 T 480 (623)
+
T Consensus 150 s 150 (331)
T 4aj2_A 150 S 150 (331)
T ss_dssp H
T ss_pred h
Confidence 4
No 220
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}
Probab=71.60 E-value=2.8 Score=43.91 Aligned_cols=118 Identities=13% Similarity=0.173 Sum_probs=68.0
Q ss_pred CCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhccccc
Q 040403 335 FPKQKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGL 413 (623)
Q Consensus 335 l~d~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~ 413 (623)
+...||.|+|| |..|..+|..++.. |+. ..++++|.+- ++ +......+.+. .+..-..
T Consensus 6 ~~~~KV~ViGaaG~VG~~~a~~l~~~-----g~~--------~evvLiDi~~----~k--~~g~a~DL~~~--~~~~~~i 64 (343)
T 3fi9_A 6 LTEEKLTIVGAAGMIGSNMAQTAAMM-----RLT--------PNLCLYDPFA----VG--LEGVAEEIRHC--GFEGLNL 64 (343)
T ss_dssp SCSSEEEEETTTSHHHHHHHHHHHHT-----TCC--------SCEEEECSCH----HH--HHHHHHHHHHH--CCTTCCC
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhc-----CCC--------CEEEEEeCCc----hh--HHHHHHhhhhC--cCCCCce
Confidence 45679999998 99999998666553 752 3599999731 00 00000111110 0000001
Q ss_pred CCCCCHHHHHhhcCCcEEEeccCCC---CC-----------CCHHHHHHcccCCCCCCE-EEecCCCCCCCCCCHHHHhc
Q 040403 414 WEGASLVEVVQQVKPDVLLGLSAVG---GL-----------FSKEVLEAMRGSTSTRPA-IFAMSNPTNNAECTPEEAFS 478 (623)
Q Consensus 414 ~~~~~L~e~V~~vkptvLIG~S~~~---g~-----------Ft~evv~~M~a~~~erPI-IFaLSNPt~~~E~tpeda~~ 478 (623)
....++.++++ +.|++|=+.|.+ |- .-+++++.+ .+++..-+ |+-.|||. .....-+++
T Consensus 65 ~~t~d~~~al~--dADvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i-~~~~p~a~~vlvvsNPv---d~~t~i~~k 138 (343)
T 3fi9_A 65 TFTSDIKEALT--DAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDI-KSYCPDCKHVIIIFNPA---DITGLVTLI 138 (343)
T ss_dssp EEESCHHHHHT--TEEEEEECCC-------CHHHHHHHHHHHHHHHHHHH-HHHCTTCCEEEECSSSH---HHHHHHHHH
T ss_pred EEcCCHHHHhC--CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHhccCcEEEEEecCch---HHHHHHHHH
Confidence 12357889998 899988544433 32 224666777 77888885 88899997 334444444
Q ss_pred c
Q 040403 479 I 479 (623)
Q Consensus 479 w 479 (623)
.
T Consensus 139 ~ 139 (343)
T 3fi9_A 139 Y 139 (343)
T ss_dssp H
T ss_pred H
Confidence 4
No 221
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=71.23 E-value=4.5 Score=34.48 Aligned_cols=33 Identities=21% Similarity=0.441 Sum_probs=25.9
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+.+|+|+|+|..|..+|+.|... | .+++++|++
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~-----g----------~~v~~~d~~ 36 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEK-----G----------HDIVLIDID 36 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHT-----T----------CEEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-----C----------CeEEEEECC
Confidence 46899999999999998887653 6 358888873
No 222
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Probab=71.15 E-value=2.2 Score=46.13 Aligned_cols=36 Identities=31% Similarity=0.463 Sum_probs=32.1
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
|++.||+|+|+|..|.-+|..|+.+ |+ ++|.++|.+
T Consensus 38 L~~~~VlvvG~GGlGs~va~~La~a-----Gv---------g~i~ivD~D 73 (434)
T 1tt5_B 38 LDTCKVLVIGAGGLGCELLKNLALS-----GF---------RQIHVIDMD 73 (434)
T ss_dssp HHTCCEEEECSSTHHHHHHHHHHHT-----TC---------CCEEEEECC
T ss_pred hcCCEEEEECcCHHHHHHHHHHHHc-----CC---------CEEEEEcCC
Confidence 5778999999999999999999986 96 679999976
No 223
>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}
Probab=71.04 E-value=6.8 Score=41.32 Aligned_cols=88 Identities=20% Similarity=0.251 Sum_probs=48.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhh-----hhcc--
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVN-----EISR-- 410 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~-----~~~~-- 410 (623)
.||+|+|||..|..+|+.|.+ . |- ...+++++|++- +..+.++..-. ....
T Consensus 2 ~kVlIiGaGgiG~~ia~~L~~----~-g~-------~~~~V~v~~r~~----------~~~~~la~~l~~~~~~~~~~~~ 59 (405)
T 4ina_A 2 AKVLQIGAGGVGGVVAHKMAM----N-RE-------VFSHITLASRTL----------SKCQEIAQSIKAKGYGEIDITT 59 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHT----C-TT-------TCCEEEEEESCH----------HHHHHHHHHHHHTTCCCCEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHh----C-CC-------CceEEEEEECCH----------HHHHHHHHHhhhhcCCceEEEE
Confidence 389999998666666665543 2 41 014688888741 11122222100 0000
Q ss_pred cccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHc
Q 040403 411 QGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAM 449 (623)
Q Consensus 411 ~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M 449 (623)
.......++.++++..++|++|=+++. .+..+++++.
T Consensus 60 ~D~~d~~~l~~~l~~~~~DvVin~ag~--~~~~~v~~a~ 96 (405)
T 4ina_A 60 VDADSIEELVALINEVKPQIVLNIALP--YQDLTIMEAC 96 (405)
T ss_dssp CCTTCHHHHHHHHHHHCCSEEEECSCG--GGHHHHHHHH
T ss_pred ecCCCHHHHHHHHHhhCCCEEEECCCc--ccChHHHHHH
Confidence 001122458888998889999977642 2345666655
No 224
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=70.99 E-value=3.6 Score=39.32 Aligned_cols=32 Identities=22% Similarity=0.358 Sum_probs=26.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.+|+|+|||.||+..|..|... |. ++.++|+.
T Consensus 3 ~~vvIIG~G~aGl~aA~~l~~~-----g~----------~v~lie~~ 34 (297)
T 3fbs_A 3 FDVIIIGGSYAGLSAALQLGRA-----RK----------NILLVDAG 34 (297)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT-----TC----------CEEEEECC
T ss_pred CCEEEECCCHHHHHHHHHHHhC-----CC----------CEEEEeCC
Confidence 5899999999999999888763 63 58888874
No 225
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=70.66 E-value=4.4 Score=36.66 Aligned_cols=74 Identities=22% Similarity=0.273 Sum_probs=40.7
Q ss_pred CceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCC
Q 040403 337 KQKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWE 415 (623)
Q Consensus 337 d~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~ 415 (623)
..+|+|.|| |-.|..+++.|++ + | .++++++++.--. ..+......+.. -| ...
T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~----~-g----------~~V~~~~r~~~~~---~~~~~~~~~~~~--~D-----~~~ 57 (206)
T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQ----A-G----------YEVTVLVRDSSRL---PSEGPRPAHVVV--GD-----VLQ 57 (206)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHH----T-T----------CEEEEEESCGGGS---CSSSCCCSEEEE--SC-----TTS
T ss_pred CCEEEEEcCCcHHHHHHHHHHHH----C-C----------CeEEEEEeChhhc---ccccCCceEEEE--ec-----CCC
Confidence 368999998 7777777777665 2 6 3577887752100 001000000000 01 112
Q ss_pred CCCHHHHHhhcCCcEEEeccCC
Q 040403 416 GASLVEVVQQVKPDVLLGLSAV 437 (623)
Q Consensus 416 ~~~L~e~V~~vkptvLIG~S~~ 437 (623)
..++.++++ ++|++|=+.+.
T Consensus 58 ~~~~~~~~~--~~d~vi~~a~~ 77 (206)
T 1hdo_A 58 AADVDKTVA--GQDAVIVLLGT 77 (206)
T ss_dssp HHHHHHHHT--TCSEEEECCCC
T ss_pred HHHHHHHHc--CCCEEEECccC
Confidence 235777787 68999977754
No 226
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=70.18 E-value=7.6 Score=38.53 Aligned_cols=111 Identities=14% Similarity=0.118 Sum_probs=59.4
Q ss_pred CCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhccccc
Q 040403 335 FPKQKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGL 413 (623)
Q Consensus 335 l~d~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~ 413 (623)
++..+|+|.|| |-.|..+++.|++. |-. -+++.+|+...-.. ...+... .....-.+-....
T Consensus 22 ~~~~~vlVtGatG~iG~~l~~~L~~~-----g~~--------~~v~~~~~~~~~~~-~~~l~~~---~~~~~~~~~~~Dl 84 (346)
T 4egb_A 22 SNAMNILVTGGAGFIGSNFVHYMLQS-----YET--------YKIINFDALTYSGN-LNNVKSI---QDHPNYYFVKGEI 84 (346)
T ss_dssp --CEEEEEETTTSHHHHHHHHHHHHH-----CTT--------EEEEEEECCCTTCC-GGGGTTT---TTCTTEEEEECCT
T ss_pred cCCCeEEEECCccHHHHHHHHHHHhh-----CCC--------cEEEEEeccccccc-hhhhhhh---ccCCCeEEEEcCC
Confidence 45689999998 88888888777764 732 35777776531110 0001100 0000000000001
Q ss_pred CCCCCHHHHHhhcCCcEEEeccCCCCCC----------------CHHHHHHcccCCCCCCEEEecC
Q 040403 414 WEGASLVEVVQQVKPDVLLGLSAVGGLF----------------SKEVLEAMRGSTSTRPAIFAMS 463 (623)
Q Consensus 414 ~~~~~L~e~V~~vkptvLIG~S~~~g~F----------------t~evv~~M~a~~~erPIIFaLS 463 (623)
....++.++++..++|++|=+.+....- |..+++++ .+..-+-+||.=|
T Consensus 85 ~d~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~-~~~~~~~~v~~SS 149 (346)
T 4egb_A 85 QNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELV-KKYPHIKLVQVST 149 (346)
T ss_dssp TCHHHHHHHHHHHTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHH-HHSTTSEEEEEEE
T ss_pred CCHHHHHHHHhhcCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHH-HhcCCCEEEEeCc
Confidence 1234578888877899999877643321 35678888 4444455887544
No 227
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=69.98 E-value=4.2 Score=35.50 Aligned_cols=35 Identities=23% Similarity=0.440 Sum_probs=26.9
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
++..+|+|+|+|..|..+|+.|... | .+++++|++
T Consensus 4 ~~~~~v~I~G~G~iG~~la~~L~~~-----g----------~~V~~id~~ 38 (141)
T 3llv_A 4 NGRYEYIVIGSEAAGVGLVRELTAA-----G----------KKVLAVDKS 38 (141)
T ss_dssp --CCSEEEECCSHHHHHHHHHHHHT-----T----------CCEEEEESC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-----C----------CeEEEEECC
Confidence 3456899999999999999888763 7 357888873
No 228
>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*
Probab=69.56 E-value=5.6 Score=38.78 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=17.1
Q ss_pred eEEEeCcchHHHHHHHHHH
Q 040403 339 KIVVAGAGSAGLGVLNAAR 357 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~ 357 (623)
||.|+|+|..|..+|..+.
T Consensus 3 ~i~iiG~G~~G~~~a~~l~ 21 (289)
T 2cvz_A 3 KVAFIGLGAMGYPMAGHLA 21 (289)
T ss_dssp CEEEECCSTTHHHHHHHHH
T ss_pred eEEEEcccHHHHHHHHHHh
Confidence 7999999999999988774
No 229
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Probab=69.48 E-value=11 Score=39.08 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=18.4
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 040403 338 QKIVVAGAGSAGLGVLNAARK 358 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~ 358 (623)
.||.|+|+|+.|..+|..|..
T Consensus 3 mkI~ViGaG~~G~~~a~~La~ 23 (404)
T 3c7a_A 3 VKVCVCGGGNGAHTLSGLAAS 23 (404)
T ss_dssp EEEEEECCSHHHHHHHHHHTT
T ss_pred ceEEEECCCHHHHHHHHHHHh
Confidence 489999999999999988754
No 230
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*
Probab=69.43 E-value=0.99 Score=45.95 Aligned_cols=113 Identities=13% Similarity=0.117 Sum_probs=63.1
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCC
Q 040403 338 QKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEG 416 (623)
Q Consensus 338 ~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~ 416 (623)
.||+|.|| |..|..++..|+.. |.-. ..-...++++|...- .++ +......+.+..-.+. +.....
T Consensus 5 mkVlVtGaaGfIG~~l~~~L~~~-----g~~~---~~~~~ev~l~D~~~~--~~~--~~g~~~dl~~~~~~~~-~di~~~ 71 (327)
T 1y7t_A 5 VRVAVTGAAGQIGYSLLFRIAAG-----EMLG---KDQPVILQLLEIPQA--MKA--LEGVVMELEDCAFPLL-AGLEAT 71 (327)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTT-----TTTC---TTCCEEEEEECCGGG--HHH--HHHHHHHHHTTTCTTE-EEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-----CCCC---CCCCCEEEEEeCCCc--hhh--ccchhhhhhccccccc-CCeEec
Confidence 58999997 99999988877652 5310 000136999997410 000 0000001100000000 001123
Q ss_pred CCHHHHHhhcCCcEEEeccCCCCC--------------CCHHHHHHcccCCC-CCCEEEecCCCC
Q 040403 417 ASLVEVVQQVKPDVLLGLSAVGGL--------------FSKEVLEAMRGSTS-TRPAIFAMSNPT 466 (623)
Q Consensus 417 ~~L~e~V~~vkptvLIG~S~~~g~--------------Ft~evv~~M~a~~~-erPIIFaLSNPt 466 (623)
.++.++++ ++|++|=+.+.+.. .|.++++++ .+++ .+..++-.|||.
T Consensus 72 ~~~~~a~~--~~D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~-~~~~~~~~~vvv~snp~ 133 (327)
T 1y7t_A 72 DDPKVAFK--DADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRAL-AEVAKKDVKVLVVGNPA 133 (327)
T ss_dssp SCHHHHTT--TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHH-HHHSCTTCEEEECSSSH
T ss_pred cChHHHhC--CCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHH-HhhcCCCeEEEEeCCch
Confidence 56888888 89999977665432 345677888 6665 556788899986
No 231
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=69.39 E-value=4.1 Score=39.35 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=27.7
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
..+|+|+|||.||+..|..|... |. ++.++|++
T Consensus 15 ~~~vvIIG~G~aGl~aA~~l~~~-----g~----------~v~lie~~ 47 (323)
T 3f8d_A 15 KFDVIIVGLGPAAYGAALYSARY-----ML----------KTLVIGET 47 (323)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT-----TC----------CEEEEESS
T ss_pred ccCEEEECccHHHHHHHHHHHHC-----CC----------cEEEEecc
Confidence 46999999999999999888763 63 48899987
No 232
>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*
Probab=69.29 E-value=7.6 Score=38.10 Aligned_cols=31 Identities=19% Similarity=0.242 Sum_probs=25.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
||.|+|+|..|..+|..|... |. +++++|++
T Consensus 2 ~i~iiG~G~mG~~~a~~l~~~-----g~----------~V~~~~~~ 32 (296)
T 2gf2_A 2 PVGFIGLGNMGNPMAKNLMKH-----GY----------PLIIYDVF 32 (296)
T ss_dssp CEEEECCSTTHHHHHHHHHHT-----TC----------CEEEECSS
T ss_pred eEEEEeccHHHHHHHHHHHHC-----CC----------EEEEEeCC
Confidence 799999999999999988763 63 47778764
No 233
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=68.92 E-value=3.4 Score=40.51 Aligned_cols=34 Identities=29% Similarity=0.529 Sum_probs=27.6
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
..+|+|+|||.||+..|..|... |+ ++.++|+..
T Consensus 3 ~~~vvIIG~G~aGl~~A~~l~~~-----g~----------~v~vie~~~ 36 (357)
T 4a9w_A 3 SVDVVVIGGGQSGLSAGYFLRRS-----GL----------SYVILDAEA 36 (357)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHS-----SC----------CEEEECCSS
T ss_pred cCCEEEECcCHHHHHHHHHHHHC-----CC----------CEEEEECCC
Confidence 46899999999999999888763 63 588888764
No 234
>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1
Probab=68.91 E-value=14 Score=34.00 Aligned_cols=49 Identities=18% Similarity=0.401 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhCCCCCCCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEcc
Q 040403 317 AVAGLLGAVRAQGRSMIDFPKQKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDA 383 (623)
Q Consensus 317 ~lAgll~A~r~~g~~~~~l~d~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~ 383 (623)
.++..+.+++..+.- -.+++++|.|| |..|..+++++... | -+++.+|+
T Consensus 22 ~~~ta~~~l~~~~~~---~~g~~vlV~Ga~ggiG~~~~~~~~~~-----G----------~~V~~~~~ 71 (198)
T 1pqw_A 22 AYLTAWHSLCEVGRL---SPGERVLIHSATGGVGMAAVSIAKMI-----G----------ARIYTTAG 71 (198)
T ss_dssp HHHHHHHHHHTTSCC---CTTCEEEETTTTSHHHHHHHHHHHHH-----T----------CEEEEEES
T ss_pred HHHHHHHHHHHHhCC---CCCCEEEEeeCCChHHHHHHHHHHHc-----C----------CEEEEEeC
Confidence 445555566433332 35789999994 77777777666543 7 25777776
No 235
>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*
Probab=68.83 E-value=1.9 Score=44.12 Aligned_cols=31 Identities=26% Similarity=0.282 Sum_probs=25.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
||.|+|+|..|..+|..|... | .+++++|+.
T Consensus 17 kI~iIG~G~mG~~la~~L~~~-----G----------~~V~~~~r~ 47 (366)
T 1evy_A 17 KAVVFGSGAFGTALAMVLSKK-----C----------REVCVWHMN 47 (366)
T ss_dssp EEEEECCSHHHHHHHHHHTTT-----E----------EEEEEECSC
T ss_pred eEEEECCCHHHHHHHHHHHhC-----C----------CEEEEEECC
Confidence 899999999999999888653 5 357888774
No 236
>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6
Probab=68.82 E-value=7.3 Score=40.01 Aligned_cols=90 Identities=14% Similarity=0.174 Sum_probs=52.8
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLW 414 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~ 414 (623)
|+..+|.|+|+|..|..+|..+... |. +++++|+.. +.....++.. . ..
T Consensus 14 l~~~~I~IIG~G~mG~alA~~L~~~-----G~----------~V~~~~~~~----------~~~~~~a~~~-G-----~~ 62 (338)
T 1np3_A 14 IQGKKVAIIGYGSQGHAHACNLKDS-----GV----------DVTVGLRSG----------SATVAKAEAH-G-----LK 62 (338)
T ss_dssp HHTSCEEEECCSHHHHHHHHHHHHT-----TC----------CEEEECCTT----------CHHHHHHHHT-T-----CE
T ss_pred hcCCEEEEECchHHHHHHHHHHHHC-----cC----------EEEEEECCh----------HHHHHHHHHC-C-----CE
Confidence 4557899999999999999888764 73 467777641 1112233211 1 11
Q ss_pred CCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHH-HcccCCCCCCEEE
Q 040403 415 EGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLE-AMRGSTSTRPAIF 460 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~-~M~a~~~erPIIF 460 (623)
.. ++.|+++ ++|++| ++..+.. .+++++ .++....+..+|.
T Consensus 63 ~~-~~~e~~~--~aDvVi-lavp~~~-~~~v~~~~i~~~l~~~~ivi 104 (338)
T 1np3_A 63 VA-DVKTAVA--AADVVM-ILTPDEF-QGRLYKEEIEPNLKKGATLA 104 (338)
T ss_dssp EE-CHHHHHH--TCSEEE-ECSCHHH-HHHHHHHHTGGGCCTTCEEE
T ss_pred Ec-cHHHHHh--cCCEEE-EeCCcHH-HHHHHHHHHHhhCCCCCEEE
Confidence 12 6888888 788877 4433333 377887 6622223344444
No 237
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}
Probab=68.76 E-value=4 Score=42.16 Aligned_cols=118 Identities=14% Similarity=0.157 Sum_probs=67.6
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhh-ccccc
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEI-SRQGL 413 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~-~~~~~ 413 (623)
.+..||.|+|||..|.++|..|... |+ . .+.++|.+- ++ +......+.+..... .+-..
T Consensus 3 m~~~kI~iiGaG~vG~~~a~~l~~~-----~~--------~-~v~l~Di~~----~~--~~g~a~dL~~~~~~~~~~~~v 62 (321)
T 3p7m_A 3 MARKKITLVGAGNIGGTLAHLALIK-----QL--------G-DVVLFDIAQ----GM--PNGKALDLLQTCPIEGVDFKV 62 (321)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHT-----TC--------C-EEEEECSSS----SH--HHHHHHHHHTTHHHHTCCCCE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhC-----CC--------c-eEEEEeCCh----HH--HHHHHHHHHhhhhhcCCCcEE
Confidence 4457999999999999999887763 54 1 699999852 11 100001111000000 00000
Q ss_pred CCCCCHHHHHhhcCCcEEEeccCCC---CC-----------CCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcc
Q 040403 414 WEGASLVEVVQQVKPDVLLGLSAVG---GL-----------FSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSI 479 (623)
Q Consensus 414 ~~~~~L~e~V~~vkptvLIG~S~~~---g~-----------Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~w 479 (623)
....+ .++++ +.|++|=+.+.+ |- .-+++++.+ .++++.-+|+-.|||. -...+-+++.
T Consensus 63 ~~t~d-~~a~~--~aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i-~~~~p~a~vivvtNPv---d~~t~~~~k~ 135 (321)
T 3p7m_A 63 RGTND-YKDLE--NSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGI-KHNCPNAFVICITNPL---DIMVNMLQKF 135 (321)
T ss_dssp EEESC-GGGGT--TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHH-HHHCTTCEEEECCSSH---HHHHHHHHHH
T ss_pred EEcCC-HHHHC--CCCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHH-HHHCCCcEEEEecCch---HHHHHHHHHh
Confidence 01123 46777 899888554443 32 125677777 7788888999999997 2333444444
No 238
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=68.65 E-value=4.4 Score=40.62 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=21.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNN 367 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls 367 (623)
-||+|+|||.||+-.|-.|... |++
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~-----G~~ 26 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKH-----GIK 26 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----TCE
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CCC
Confidence 4899999999999999888764 864
No 239
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=68.50 E-value=4.4 Score=39.41 Aligned_cols=33 Identities=15% Similarity=0.182 Sum_probs=26.8
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
..+|||+|||.||+..|..|... |. ++.++|+.
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~-----g~----------~v~lie~~ 39 (332)
T 3lzw_A 7 VYDITIIGGGPVGLFTAFYGGMR-----QA----------SVKIIESL 39 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT-----TC----------CEEEECSS
T ss_pred cceEEEECCCHHHHHHHHHHHHC-----CC----------CEEEEEcC
Confidence 35899999999999999887663 63 57888885
No 240
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}
Probab=68.48 E-value=25 Score=35.92 Aligned_cols=85 Identities=21% Similarity=0.210 Sum_probs=47.9
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWE 415 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~ 415 (623)
.+++|+|.|+|..|...+.++.. .|. +++.+|+ ++.+..+++.-.- ..-....
T Consensus 189 ~g~~VlV~G~G~vG~~a~qla~~-----~Ga----------~Vi~~~~-----------~~~~~~~~~~lGa-~~vi~~~ 241 (363)
T 3uog_A 189 AGDRVVVQGTGGVALFGLQIAKA-----TGA----------EVIVTSS-----------SREKLDRAFALGA-DHGINRL 241 (363)
T ss_dssp TTCEEEEESSBHHHHHHHHHHHH-----TTC----------EEEEEES-----------CHHHHHHHHHHTC-SEEEETT
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-----cCC----------EEEEEec-----------CchhHHHHHHcCC-CEEEcCC
Confidence 57899999999777666555443 272 5777775 2445566643110 0000111
Q ss_pred CCCHHHHHhhc----CCcEEEeccCCCCCCCHHHHHHc
Q 040403 416 GASLVEVVQQV----KPDVLLGLSAVGGLFSKEVLEAM 449 (623)
Q Consensus 416 ~~~L~e~V~~v----kptvLIG~S~~~g~Ft~evv~~M 449 (623)
..++.+.++.. +.|++|=+++ +..-++.++.+
T Consensus 242 ~~~~~~~v~~~~~g~g~D~vid~~g--~~~~~~~~~~l 277 (363)
T 3uog_A 242 EEDWVERVYALTGDRGADHILEIAG--GAGLGQSLKAV 277 (363)
T ss_dssp TSCHHHHHHHHHTTCCEEEEEEETT--SSCHHHHHHHE
T ss_pred cccHHHHHHHHhCCCCceEEEECCC--hHHHHHHHHHh
Confidence 23455555433 6788887775 33345566666
No 241
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Probab=68.33 E-value=3.1 Score=47.31 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=32.7
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
|+..||+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 15 L~~s~VlVVGaGGLGsevak~La~a-----GV---------G~ItlvD~D 50 (640)
T 1y8q_B 15 VAGGRVLVVGAGGIGCELLKNLVLT-----GF---------SHIDLIDLD 50 (640)
T ss_dssp HHHCEEEEECCSHHHHHHHHHHHHH-----TC---------CEEEEEECC
T ss_pred HhcCeEEEECcCHHHHHHHHHHHHc-----CC---------CeEEEecCC
Confidence 6778999999999999999999986 96 689999986
No 242
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=68.32 E-value=4.4 Score=39.89 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=27.2
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
..+|+|+|||.||+..|..|... |. ++.++|++.
T Consensus 5 ~~~vvIIG~G~aGl~aA~~l~~~-----g~----------~v~lie~~~ 38 (335)
T 2zbw_A 5 HTDVLIVGAGPTGLFAGFYVGMR-----GL----------SFRFVDPLP 38 (335)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT-----TC----------CEEEEESSS
T ss_pred cCcEEEECCCHHHHHHHHHHHhC-----CC----------CEEEEeCCC
Confidence 46899999999999999887652 63 588888863
No 243
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=68.13 E-value=4.4 Score=41.83 Aligned_cols=35 Identities=23% Similarity=0.442 Sum_probs=28.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
++|||+|||.||+..|..|.+. |.+ .+|.++|+..
T Consensus 2 k~vvIIGaG~aGl~aA~~L~~~-----g~~--------~~V~lie~~~ 36 (404)
T 3fg2_P 2 DTVLIAGAGHAGFQVAVSLRQA-----KYP--------GRIALINDEK 36 (404)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT-----TCC--------SCEEEECCSS
T ss_pred CCEEEEcChHHHHHHHHHHHhh-----CcC--------CCEEEEeCCC
Confidence 5899999999999999988764 742 3799999875
No 244
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Probab=67.98 E-value=4.7 Score=42.39 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=21.4
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHH
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~ 359 (623)
-+..+|+|+|||.||+..|..|.+.
T Consensus 9 ~~~~~v~IIGaG~aGl~aA~~L~~~ 33 (489)
T 2jae_A 9 KGSHSVVVLGGGPAGLCSAFELQKA 33 (489)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHHT
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHC
Confidence 3567999999999999999888763
No 245
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=67.72 E-value=5.1 Score=36.07 Aligned_cols=32 Identities=25% Similarity=0.454 Sum_probs=26.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.+|+|+|+|.+|+-.|..+.+. | .++.++|+.
T Consensus 2 ~~vvIIGgG~~Gl~~A~~l~~~-----g----------~~v~lie~~ 33 (180)
T 2ywl_A 2 WDVIVVGGGPSGLSAALFLARA-----G----------LKVLVLDGG 33 (180)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT-----T----------CCEEEEECS
T ss_pred CeEEEECCCHHHHHHHHHHHHC-----C----------CcEEEEeCC
Confidence 4799999999999999888763 6 357888875
No 246
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=67.56 E-value=5.9 Score=41.51 Aligned_cols=34 Identities=18% Similarity=0.347 Sum_probs=26.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.||||+|+|.||+..|..|... +- + -+|.++|++
T Consensus 3 K~VvIIGgG~aGl~aA~~L~~~-----~~------~--~~VtlI~~~ 36 (430)
T 3hyw_A 3 KHVVVIGGGVGGIATAYNLRNL-----MP------D--LKITLISDR 36 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHH-----CT------T--CEEEEECSS
T ss_pred CcEEEECCCHHHHHHHHHHhcc-----Cc------C--CeEEEEcCC
Confidence 4899999999999999988653 41 1 368888875
No 247
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=67.55 E-value=26 Score=38.36 Aligned_cols=119 Identities=24% Similarity=0.233 Sum_probs=78.6
Q ss_pred cCCccccCc---chhHHHHHHHHHHHHHH------------------hCCCCCCCCCceEEEeCcchHHHHHHHHHHHHH
Q 040403 302 KYRMFNDDV---QGTAGVAVAGLLGAVRA------------------QGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTM 360 (623)
Q Consensus 302 ~~~~FNDDi---QGTaaV~lAgll~A~r~------------------~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m 360 (623)
.+.+.|--- ..+|=-+++.+|+..|- .|.. |.+.+|.|+|.|..|..+|+.+...
T Consensus 89 gi~v~n~p~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~---l~g~~vgIIG~G~IG~~vA~~l~~~- 164 (529)
T 1ygy_A 89 GVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTE---IFGKTVGVVGLGRIGQLVAQRIAAF- 164 (529)
T ss_dssp TCEEECCTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGGCCBCC---CTTCEEEEECCSHHHHHHHHHHHTT-
T ss_pred CeEEEECCCcchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCcccCcCccc---cCCCEEEEEeeCHHHHHHHHHHHhC-
Confidence 466666432 23455578888887653 1345 8999999999999999999988653
Q ss_pred HHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEecc----C
Q 040403 361 ARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLS----A 436 (623)
Q Consensus 361 ~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S----~ 436 (623)
|+ +++.+|+.- +. .. +... . . ...++.|+++ ++|+++=+- .
T Consensus 165 ----G~----------~V~~~d~~~---------~~--~~-a~~~-g-----~-~~~~l~e~~~--~aDvV~l~~P~~~~ 209 (529)
T 1ygy_A 165 ----GA----------YVVAYDPYV---------SP--AR-AAQL-G-----I-ELLSLDDLLA--RADFISVHLPKTPE 209 (529)
T ss_dssp ----TC----------EEEEECTTS---------CH--HH-HHHH-T-----C-EECCHHHHHH--HCSEEEECCCCSTT
T ss_pred ----CC----------EEEEECCCC---------Ch--hH-HHhc-C-----c-EEcCHHHHHh--cCCEEEECCCCchH
Confidence 63 578888741 11 11 2110 1 1 1237999998 789888542 2
Q ss_pred CCCCCCHHHHHHcccCCCCCCEEEecC
Q 040403 437 VGGLFSKEVLEAMRGSTSTRPAIFAMS 463 (623)
Q Consensus 437 ~~g~Ft~evv~~M~a~~~erPIIFaLS 463 (623)
..+.++++.+..| .+..+|.=.|
T Consensus 210 t~~~i~~~~~~~~----k~g~ilin~a 232 (529)
T 1ygy_A 210 TAGLIDKEALAKT----KPGVIIVNAA 232 (529)
T ss_dssp TTTCBCHHHHTTS----CTTEEEEECS
T ss_pred HHHHhCHHHHhCC----CCCCEEEECC
Confidence 3467888888888 5667888777
No 248
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=67.24 E-value=14 Score=37.14 Aligned_cols=48 Identities=23% Similarity=0.262 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEcc
Q 040403 318 VAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDA 383 (623)
Q Consensus 318 lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~ 383 (623)
....+.+++..+.+ ..++++|+|||+.|.-.+.++..+ |- .+++.+|+
T Consensus 149 ~~ta~~~l~~~~~~----~g~~VlV~GaG~~g~~a~~~a~~~-----~g---------~~Vi~~~~ 196 (348)
T 4eez_A 149 GVTTYKAIKVSGVK----PGDWQVIFGAGGLGNLAIQYAKNV-----FG---------AKVIAVDI 196 (348)
T ss_dssp HHHHHHHHHHHTCC----TTCEEEEECCSHHHHHHHHHHHHT-----SC---------CEEEEEES
T ss_pred eeeEEeeecccCCC----CCCEEEEEcCCCccHHHHHHHHHh-----CC---------CEEEEEEC
Confidence 34456777877766 578999999999885544444332 31 56888887
No 249
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} PDB: 3a63_A* 3abi_A*
Probab=66.98 E-value=6.4 Score=41.15 Aligned_cols=123 Identities=15% Similarity=0.184 Sum_probs=65.2
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWE 415 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~ 415 (623)
++.||+|+|+|.+|-.+|+.|.+. .++.++|++ .+..+.++....... .....
T Consensus 15 ~~~~v~IiGaG~iG~~ia~~L~~~----------------~~V~V~~R~----------~~~a~~la~~~~~~~-~d~~~ 67 (365)
T 2z2v_A 15 RHMKVLILGAGNIGRAIAWDLKDE----------------FDVYIGDVN----------NENLEKVKEFATPLK-VDASN 67 (365)
T ss_dssp -CCEEEEECCSHHHHHHHHHHTTT----------------SEEEEEESC----------HHHHHHHTTTSEEEE-CCTTC
T ss_pred CCCeEEEEcCCHHHHHHHHHHHcC----------------CeEEEEECC----------HHHHHHHHhhCCeEE-EecCC
Confidence 457999999999999888877541 357788873 111122221100000 00112
Q ss_pred CCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCcc
Q 040403 416 GASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGSPFKDV 495 (623)
Q Consensus 416 ~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~Grai~AtGsPF~pv 495 (623)
..+|.++++ ++|++|-+. |..+..+++++. .+ ..=.++-+|.-....+.--+.|.+. |. .+..|+-|+|-
T Consensus 68 ~~~l~~ll~--~~DvVIn~~--P~~~~~~v~~a~-l~--~G~~~vD~s~~~~~~~~l~~~Ak~a--G~-~~l~g~G~dPG 137 (365)
T 2z2v_A 68 FDKLVEVMK--EFELVIGAL--PGFLGFKSIKAA-IK--SKVDMVDVSFMPENPLELRDEAEKA--QV-TIVFDAGFAPG 137 (365)
T ss_dssp HHHHHHHHT--TCSCEEECC--CHHHHHHHHHHH-HH--TTCCEEECCCCSSCGGGGHHHHHHT--TC-EEECSCBTTTB
T ss_pred HHHHHHHHh--CCCEEEECC--ChhhhHHHHHHH-HH--hCCeEEEccCCcHHHHHHHHHHHHc--CC-EEEECCCCcch
Confidence 245888888 799999763 333556676654 22 2223566776221122223444443 43 33455556663
No 250
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=66.85 E-value=5.3 Score=39.40 Aligned_cols=33 Identities=30% Similarity=0.485 Sum_probs=27.6
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+..|+|+|||.+|+.+|-.|.+. |+ ++.++|+.
T Consensus 4 ~~dvvIIG~G~~Gl~~A~~La~~-----G~----------~V~vlE~~ 36 (369)
T 3dme_A 4 DIDCIVIGAGVVGLAIARALAAG-----GH----------EVLVAEAA 36 (369)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHT-----TC----------CEEEECSS
T ss_pred cCCEEEECCCHHHHHHHHHHHhC-----CC----------eEEEEeCC
Confidence 46899999999999999888763 73 57888886
No 251
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=66.70 E-value=4.8 Score=41.44 Aligned_cols=36 Identities=14% Similarity=0.225 Sum_probs=26.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
.+|||+|||.||+..|..|.+... . | .+|.++|++.
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~-~-g----------~~V~vie~~~ 37 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVG-S-K----------ADVKVINKSR 37 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHG-G-G----------SEEEEEESSS
T ss_pred CeEEEECCCHHHHHHHHHHHhhCC-C-C----------CeEEEEeCCC
Confidence 479999999999999998876211 1 3 4577777654
No 252
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=66.10 E-value=4 Score=39.85 Aligned_cols=34 Identities=12% Similarity=0.129 Sum_probs=27.4
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
...+|||+|||.||+..|..|... |+ ++.++|+.
T Consensus 21 ~~~~vvIIG~G~aGl~aA~~l~~~-----g~----------~v~vie~~ 54 (338)
T 3itj_A 21 VHNKVTIIGSGPAAHTAAIYLARA-----EI----------KPILYEGM 54 (338)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHT-----TC----------CCEEECCS
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC-----CC----------CEEEEecC
Confidence 357899999999999999888774 74 47788873
No 253
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=65.58 E-value=5.2 Score=41.42 Aligned_cols=38 Identities=24% Similarity=0.396 Sum_probs=30.2
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCc
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGL 386 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GL 386 (623)
...+|||+|||.||+..|..|.+. |.+ .+|.++|+..-
T Consensus 8 ~~~~vvIIGaG~aGl~aA~~L~~~-----g~~--------~~V~lie~~~~ 45 (415)
T 3lxd_A 8 ERADVVIVGAGHGGAQAAIALRQN-----GFE--------GRVLVIGREPE 45 (415)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHT-----TCC--------SCEEEEESSSS
T ss_pred CCCcEEEECChHHHHHHHHHHHcc-----CcC--------CCEEEEecCCC
Confidence 457999999999999999998764 742 36889988643
No 254
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=65.55 E-value=6.6 Score=35.83 Aligned_cols=36 Identities=17% Similarity=0.350 Sum_probs=28.2
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+.+.+|+|+|+|..|..+|+.|... .| .+++++|++
T Consensus 37 ~~~~~v~IiG~G~~G~~~a~~L~~~----~g----------~~V~vid~~ 72 (183)
T 3c85_A 37 PGHAQVLILGMGRIGTGAYDELRAR----YG----------KISLGIEIR 72 (183)
T ss_dssp CTTCSEEEECCSHHHHHHHHHHHHH----HC----------SCEEEEESC
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhc----cC----------CeEEEEECC
Confidence 6677999999999999999988652 15 357888873
No 255
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*
Probab=65.37 E-value=5.9 Score=40.21 Aligned_cols=36 Identities=25% Similarity=0.292 Sum_probs=27.0
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
.+..+|+|+|||.||+..|..|... |+ ++.++|+.-
T Consensus 9 m~~~dVvIVGaG~aGl~~A~~L~~~-----G~----------~v~viE~~~ 44 (379)
T 3alj_A 9 GKTRRAEVAGGGFAGLTAAIALKQN-----GW----------DVRLHEKSS 44 (379)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHT-----TC----------EEEEECSSS
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHC-----CC----------CEEEEecCC
Confidence 4467899999999999999888763 74 466777653
No 256
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=65.15 E-value=5.4 Score=40.00 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=29.3
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCc
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGL 386 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GL 386 (623)
.+..|+|+|||.+|+.+|..|.+. |+ ++.++|+..+
T Consensus 16 ~~~dvvIIGgG~~Gl~~A~~La~~-----G~----------~V~llE~~~~ 51 (382)
T 1ryi_A 16 RHYEAVVIGGGIIGSAIAYYLAKE-----NK----------NTALFESGTM 51 (382)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHT-----TC----------CEEEECSSST
T ss_pred CCCCEEEECcCHHHHHHHHHHHhC-----CC----------cEEEEeCCCC
Confidence 356899999999999999988773 73 5888998643
No 257
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=65.03 E-value=5.6 Score=39.13 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=27.3
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
..+|+|+|||.||+..|..+... |. ++.++|+.
T Consensus 8 ~~dvvIIG~G~aGl~aA~~l~~~-----g~----------~v~lie~~ 40 (325)
T 2q7v_A 8 DYDVVIIGGGPAGLTAAIYTGRA-----QL----------STLILEKG 40 (325)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT-----TC----------CEEEEESS
T ss_pred cCCEEEECCCHHHHHHHHHHHHc-----CC----------cEEEEeCC
Confidence 46899999999999999887663 63 58889886
No 258
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=64.57 E-value=5.8 Score=39.81 Aligned_cols=36 Identities=31% Similarity=0.352 Sum_probs=28.8
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcc
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLI 387 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi 387 (623)
+..|+|+|||.+|+.+|-.|.+. |. ++.++|+....
T Consensus 3 ~~dvvIIGaG~~Gl~~A~~La~~-----G~----------~V~vie~~~~~ 38 (389)
T 2gf3_A 3 HFDVIVVGAGSMGMAAGYQLAKQ-----GV----------KTLLVDAFDPP 38 (389)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHT-----TC----------CEEEECSSCSS
T ss_pred cCCEEEECCCHHHHHHHHHHHhC-----CC----------eEEEEeCCCCC
Confidence 35799999999999999988764 73 58889886543
No 259
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=64.53 E-value=5.2 Score=39.46 Aligned_cols=36 Identities=19% Similarity=0.358 Sum_probs=30.1
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 334 DFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 334 ~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+|++.+|||+|+|..|..-+++|+.+ | .++.+++..
T Consensus 28 ~L~gk~VLVVGgG~va~~ka~~Ll~~-----G----------A~VtVvap~ 63 (223)
T 3dfz_A 28 DLKGRSVLVVGGGTIATRRIKGFLQE-----G----------AAITVVAPT 63 (223)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHGGG-----C----------CCEEEECSS
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHC-----C----------CEEEEECCC
Confidence 48999999999999999998888875 6 357888863
No 260
>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}
Probab=64.49 E-value=24 Score=35.66 Aligned_cols=100 Identities=16% Similarity=0.205 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhCCCCCCCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCC
Q 040403 317 AVAGLLGAVRAQGRSMIDFPKQKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENID 395 (623)
Q Consensus 317 ~lAgll~A~r~~g~~~~~l~d~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~ 395 (623)
.++..+.++.-.+.- -.+++|+|.|| |..|..+++++... |. +++.+|+.
T Consensus 143 ~~~ta~~~l~~~~~~---~~g~~VlV~Gasg~iG~~~~~~a~~~-----Ga----------~Vi~~~~~----------- 193 (342)
T 4eye_A 143 NYHTMYFAYARRGQL---RAGETVLVLGAAGGIGTAAIQIAKGM-----GA----------KVIAVVNR----------- 193 (342)
T ss_dssp HHHHHHHHHHTTSCC---CTTCEEEESSTTSHHHHHHHHHHHHT-----TC----------EEEEEESS-----------
T ss_pred HHHHHHHHHHHhcCC---CCCCEEEEECCCCHHHHHHHHHHHHc-----CC----------EEEEEeCC-----------
Confidence 344455566333333 36889999998 88887776665542 72 57777763
Q ss_pred hhhHHhHHHhhhhcccccCCCCCHHHHHhhc----CCcEEEeccCCCCCCCHHHHHHc
Q 040403 396 PDAKPFARKVNEISRQGLWEGASLVEVVQQV----KPDVLLGLSAVGGLFSKEVLEAM 449 (623)
Q Consensus 396 ~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~v----kptvLIG~S~~~g~Ft~evv~~M 449 (623)
+.+..+++.-.. ..-.... .++.+.++.. +.|++|=+++. ...++.++.|
T Consensus 194 ~~~~~~~~~~ga-~~v~~~~-~~~~~~v~~~~~~~g~Dvvid~~g~--~~~~~~~~~l 247 (342)
T 4eye_A 194 TAATEFVKSVGA-DIVLPLE-EGWAKAVREATGGAGVDMVVDPIGG--PAFDDAVRTL 247 (342)
T ss_dssp GGGHHHHHHHTC-SEEEESS-TTHHHHHHHHTTTSCEEEEEESCC----CHHHHHHTE
T ss_pred HHHHHHHHhcCC-cEEecCc-hhHHHHHHHHhCCCCceEEEECCch--hHHHHHHHhh
Confidence 234455542110 0000112 4566665543 57888876653 2334555555
No 261
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=64.41 E-value=5.7 Score=39.91 Aligned_cols=34 Identities=29% Similarity=0.494 Sum_probs=28.3
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
+..|+|+|||.+|+.+|..|.+. |. ++.++|+..
T Consensus 5 ~~dVvIIGgGi~Gl~~A~~La~~-----G~----------~V~lle~~~ 38 (382)
T 1y56_B 5 KSEIVVIGGGIVGVTIAHELAKR-----GE----------EVTVIEKRF 38 (382)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHT-----TC----------CEEEECSSS
T ss_pred cCCEEEECCCHHHHHHHHHHHHC-----CC----------eEEEEeCCC
Confidence 46899999999999999988763 73 488999874
No 262
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*
Probab=64.38 E-value=6.4 Score=41.83 Aligned_cols=38 Identities=21% Similarity=0.428 Sum_probs=28.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.+|+|+|||.||+..|..|.+.. .. |++. .++.++|+.
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~-~~-G~~~-------~~V~v~E~~ 40 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQ-EK-GAEI-------PELVCFEKQ 40 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHH-HT-TCCC-------CEEEEECSS
T ss_pred CcEEEECccHHHHHHHHHHHhhh-hc-CCCC-------CcEEEEEcC
Confidence 48999999999999999987721 12 7531 237788875
No 263
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6
Probab=64.24 E-value=14 Score=36.91 Aligned_cols=32 Identities=28% Similarity=0.389 Sum_probs=25.8
Q ss_pred ceEEEeC-cchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 338 QKIVVAG-AGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 338 ~riv~~G-AGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.||.|+| +|..|..+|..+... |. +++++|++
T Consensus 22 ~~I~iIGg~G~mG~~la~~l~~~-----G~----------~V~~~~~~ 54 (298)
T 2pv7_A 22 HKIVIVGGYGKLGGLFARYLRAS-----GY----------PISILDRE 54 (298)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTT-----TC----------CEEEECTT
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC-----CC----------eEEEEECC
Confidence 4899999 999999999988763 63 47778764
No 264
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=64.03 E-value=6 Score=38.14 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.3
Q ss_pred CceEEEeCcchHHHHHHHHHHHH
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~ 359 (623)
..+|||+|||.||+..|..|.+.
T Consensus 4 ~~~vvIIG~G~aGl~aA~~l~~~ 26 (315)
T 3r9u_A 4 MLDVAIIGGGPAGLSAGLYATRG 26 (315)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHC
Confidence 46899999999999999988774
No 265
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=63.98 E-value=5.7 Score=38.94 Aligned_cols=33 Identities=27% Similarity=0.463 Sum_probs=27.0
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+.+|+|+|+|.||+..|..+.+. |+ ++.++|+.
T Consensus 16 ~~dvvIIG~G~aGl~aA~~l~~~-----g~----------~v~lie~~ 48 (319)
T 3cty_A 16 DFDVVIVGAGAAGFSAAVYAARS-----GF----------SVAILDKA 48 (319)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT-----TC----------CEEEEESS
T ss_pred CCcEEEECcCHHHHHHHHHHHhC-----CC----------cEEEEeCC
Confidence 46899999999999999888763 73 48888874
No 266
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=63.96 E-value=7.3 Score=34.65 Aligned_cols=34 Identities=15% Similarity=0.270 Sum_probs=27.2
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
...+|+|+|+|..|..+++.|... | .++.++|++
T Consensus 2 ~~~~vlI~G~G~vG~~la~~L~~~-----g----------~~V~vid~~ 35 (153)
T 1id1_A 2 RKDHFIVCGHSILAINTILQLNQR-----G----------QNVTVISNL 35 (153)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHHT-----T----------CCEEEEECC
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC-----C----------CCEEEEECC
Confidence 356899999999999999888763 6 358888874
No 267
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=63.65 E-value=6.4 Score=40.34 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 040403 338 QKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~ 359 (623)
.+|+|+|||.||+..|..|.+.
T Consensus 2 ~dVvVIGaG~aGl~aA~~L~~~ 23 (431)
T 3k7m_X 2 YDAIVVGGGFSGLKAARDLTNA 23 (431)
T ss_dssp EEEEEECCBHHHHHHHHHHHHT
T ss_pred CCEEEECCcHHHHHHHHHHHHc
Confidence 3699999999999999988874
No 268
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=63.58 E-value=6.5 Score=39.34 Aligned_cols=35 Identities=9% Similarity=0.197 Sum_probs=27.5
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
...+|||+|||.||+..|..+... |+ ++.++|+..
T Consensus 13 ~~~dvvIIG~G~aGl~aA~~l~~~-----g~----------~v~lie~~~ 47 (360)
T 3ab1_A 13 DMRDLTIIGGGPTGIFAAFQCGMN-----NI----------SCRIIESMP 47 (360)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHT-----TC----------CEEEECSSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHhC-----CC----------CEEEEecCC
Confidence 357899999999999998877652 63 578888763
No 269
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Probab=63.55 E-value=18 Score=37.37 Aligned_cols=88 Identities=26% Similarity=0.332 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChh
Q 040403 318 VAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPD 397 (623)
Q Consensus 318 lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~ 397 (623)
++..+.+++..+.+ .+++|+|+|+|..|...+++... .|. ++|+.+|+ ++.
T Consensus 171 ~~ta~~al~~~~~~----~g~~VlV~GaG~vG~~aiqlAk~-----~Ga---------~~Vi~~~~-----------~~~ 221 (398)
T 1kol_A 171 LPTGYHGAVTAGVG----PGSTVYVAGAGPVGLAAAASARL-----LGA---------AVVIVGDL-----------NPA 221 (398)
T ss_dssp HHHHHHHHHHTTCC----TTCEEEEECCSHHHHHHHHHHHH-----TTC---------SEEEEEES-----------CHH
T ss_pred HHHHHHHHHHcCCC----CCCEEEEECCcHHHHHHHHHHHH-----CCC---------CeEEEEcC-----------CHH
Confidence 44455666654444 57899999999877666554443 273 46888876 345
Q ss_pred hHHhHHHhh-hhcccccCCCCCHHHHHhhc----CCcEEEeccC
Q 040403 398 AKPFARKVN-EISRQGLWEGASLVEVVQQV----KPDVLLGLSA 436 (623)
Q Consensus 398 ~~~fA~~~~-~~~~~~~~~~~~L~e~V~~v----kptvLIG~S~ 436 (623)
+..+|+.-. +.-+ .....++.+.|+.. +.|++|=+++
T Consensus 222 ~~~~a~~lGa~~i~--~~~~~~~~~~v~~~t~g~g~Dvvid~~G 263 (398)
T 1kol_A 222 RLAHAKAQGFEIAD--LSLDTPLHEQIAALLGEPEVDCAVDAVG 263 (398)
T ss_dssp HHHHHHHTTCEEEE--TTSSSCHHHHHHHHHSSSCEEEEEECCC
T ss_pred HHHHHHHcCCcEEc--cCCcchHHHHHHHHhCCCCCCEEEECCC
Confidence 566664310 0000 01112355555432 4677776665
No 270
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1
Probab=63.45 E-value=12 Score=37.96 Aligned_cols=37 Identities=30% Similarity=0.353 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHH
Q 040403 317 AVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAAR 357 (623)
Q Consensus 317 ~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~ 357 (623)
.++..+.|++..+.+ .+++|+|.|||..|...+++..
T Consensus 153 ~~~ta~~al~~~~~~----~g~~VlV~GaG~vG~~a~qla~ 189 (352)
T 1e3j_A 153 PLSVGVHACRRAGVQ----LGTTVLVIGAGPIGLVSVLAAK 189 (352)
T ss_dssp HHHHHHHHHHHHTCC----TTCEEEEECCSHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcCCC----CCCEEEEECCCHHHHHHHHHHH
Confidence 444556667666655 5789999999877765555443
No 271
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=63.40 E-value=6.3 Score=38.32 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=26.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.+|+|+|+|.||+..|..+.+. |. .++.++|+.
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~-----g~---------~~v~lie~~ 34 (311)
T 2q0l_A 2 IDCAIIGGGPAGLSAGLYATRG-----GV---------KNAVLFEKG 34 (311)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT-----TC---------SSEEEECSS
T ss_pred ceEEEECccHHHHHHHHHHHHC-----CC---------CcEEEEcCC
Confidence 4799999999999999888763 73 268889885
No 272
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*
Probab=63.38 E-value=20 Score=36.14 Aligned_cols=85 Identities=28% Similarity=0.353 Sum_probs=47.0
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHh-hhhcccccC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKV-NEISRQGLW 414 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~-~~~~~~~~~ 414 (623)
.+++|+|+|||..|...+++... .|. ++++.+|+. +.+..+++.- ...- ..
T Consensus 164 ~g~~VlV~GaG~vG~~~~q~a~~-----~Ga---------~~Vi~~~~~-----------~~~~~~~~~la~~v~---~~ 215 (343)
T 2dq4_A 164 SGKSVLITGAGPIGLMAAMVVRA-----SGA---------GPILVSDPN-----------PYRLAFARPYADRLV---NP 215 (343)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHH-----TTC---------CSEEEECSC-----------HHHHGGGTTTCSEEE---CT
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-----cCC---------CEEEEECCC-----------HHHHHHHHHhHHhcc---Cc
Confidence 57899999998777666655443 273 368877763 2233333210 0000 11
Q ss_pred CCCCHHHHHhhc---CCcEEEeccCCCCCCCHHHHHHc
Q 040403 415 EGASLVEVVQQV---KPDVLLGLSAVGGLFSKEVLEAM 449 (623)
Q Consensus 415 ~~~~L~e~V~~v---kptvLIG~S~~~g~Ft~evv~~M 449 (623)
...++.+.++.. +.|++|=+++.+ ...++.++.|
T Consensus 216 ~~~~~~~~~~~~~~~g~D~vid~~g~~-~~~~~~~~~l 252 (343)
T 2dq4_A 216 LEEDLLEVVRRVTGSGVEVLLEFSGNE-AAIHQGLMAL 252 (343)
T ss_dssp TTSCHHHHHHHHHSSCEEEEEECSCCH-HHHHHHHHHE
T ss_pred CccCHHHHHHHhcCCCCCEEEECCCCH-HHHHHHHHHH
Confidence 123566666543 678888777531 2234555655
No 273
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=63.16 E-value=6.8 Score=40.65 Aligned_cols=36 Identities=17% Similarity=0.347 Sum_probs=29.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCc
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGL 386 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GL 386 (623)
.+|||+|||.||+..|..|.+. |.+ .+|.++|+..-
T Consensus 3 ~~vvIIGaG~AGl~aA~~L~~~-----g~~--------~~V~li~~~~~ 38 (410)
T 3ef6_A 3 THVAIIGNGVGGFTTAQALRAE-----GFE--------GRISLIGDEPH 38 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----TCC--------SEEEEEECSSS
T ss_pred CCEEEEcccHHHHHHHHHHHcc-----CcC--------CeEEEEECCCC
Confidence 4899999999999999988763 742 46999988644
No 274
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*
Probab=63.15 E-value=6.4 Score=41.24 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=28.5
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
...+|+|+|||.||+..|..|.+. |.. .++.++|+.
T Consensus 5 ~~~dV~IIGaG~aGl~aA~~L~~~-----G~~--------~~V~v~E~~ 40 (447)
T 2gv8_A 5 TIRKIAIIGAGPSGLVTAKALLAE-----KAF--------DQVTLFERR 40 (447)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTT-----TCC--------SEEEEECSS
T ss_pred CCCEEEEECccHHHHHHHHHHHhc-----CCC--------CCeEEEecC
Confidence 457899999999999999888763 741 267888876
No 275
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*
Probab=63.11 E-value=7.7 Score=38.91 Aligned_cols=34 Identities=21% Similarity=0.366 Sum_probs=28.0
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
+..|+|+|||.+|+.+|-.|.+. | .++.++|+..
T Consensus 6 ~~dVvVIG~Gi~Gls~A~~La~~-----G----------~~V~vle~~~ 39 (363)
T 1c0p_A 6 QKRVVVLGSGVIGLSSALILARK-----G----------YSVHILARDL 39 (363)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHT-----T----------CEEEEEESSC
T ss_pred CCCEEEECCCHHHHHHHHHHHhC-----C----------CEEEEEeccC
Confidence 46899999999999999988653 7 3688999764
No 276
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*
Probab=63.05 E-value=6.6 Score=40.22 Aligned_cols=36 Identities=17% Similarity=0.404 Sum_probs=28.2
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
..+.+|+|+|||.||+..|..|... |+ ++.++|+..
T Consensus 24 ~~~~dV~IVGaG~aGl~~A~~L~~~-----G~----------~v~v~E~~~ 59 (398)
T 2xdo_A 24 LSDKNVAIIGGGPVGLTMAKLLQQN-----GI----------DVSVYERDN 59 (398)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTT-----TC----------EEEEEECSS
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHC-----CC----------CEEEEeCCC
Confidence 3567999999999999999887663 74 577787753
No 277
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=63.03 E-value=6.9 Score=41.24 Aligned_cols=33 Identities=21% Similarity=0.366 Sum_probs=27.6
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
..+|||+|||.||+..|..+.+. | .++.++|+.
T Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~-----g----------~~V~lie~~ 36 (467)
T 1zk7_A 4 PVQVAVIGSGGAAMAAALKAVEQ-----G----------AQVTLIERG 36 (467)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-----T----------CEEEEEESS
T ss_pred cCCEEEECCCHHHHHHHHHHHHC-----C----------CEEEEEeCC
Confidence 46899999999999999877663 6 368999986
No 278
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=62.98 E-value=7.1 Score=34.41 Aligned_cols=34 Identities=12% Similarity=0.160 Sum_probs=27.5
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
++ .+|+|+|+|..|..+|+.|... | .+++++|++
T Consensus 6 ~~-~~viIiG~G~~G~~la~~L~~~-----g----------~~v~vid~~ 39 (140)
T 3fwz_A 6 IC-NHALLVGYGRVGSLLGEKLLAS-----D----------IPLVVIETS 39 (140)
T ss_dssp CC-SCEEEECCSHHHHHHHHHHHHT-----T----------CCEEEEESC
T ss_pred CC-CCEEEECcCHHHHHHHHHHHHC-----C----------CCEEEEECC
Confidence 44 5899999999999999988763 7 358888884
No 279
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=62.90 E-value=6 Score=39.21 Aligned_cols=25 Identities=28% Similarity=0.419 Sum_probs=20.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCc
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNE 368 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~ 368 (623)
-|+|+|||.||+-.|..|... |++.
T Consensus 6 DViIVGaGpaGl~~A~~La~~-----G~~V 30 (397)
T 3oz2_A 6 DVLVVGGGPGGSTAARYAAKY-----GLKT 30 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-----TCCE
T ss_pred CEEEECcCHHHHHHHHHHHHC-----CCcE
Confidence 489999999999999888764 8653
No 280
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=62.48 E-value=7.2 Score=41.73 Aligned_cols=34 Identities=32% Similarity=0.398 Sum_probs=28.4
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
...+|+|+|+|.||+..|..|... |. ++.++|+.
T Consensus 121 ~~~~V~IIGgGpAGl~aA~~L~~~-----G~----------~V~v~e~~ 154 (456)
T 2vdc_G 121 LGLSVGVIGAGPAGLAAAEELRAK-----GY----------EVHVYDRY 154 (456)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHH-----TC----------CEEEECSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-----CC----------eEEEEecc
Confidence 467899999999999999998774 73 47888875
No 281
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=62.06 E-value=6.7 Score=39.36 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=19.8
Q ss_pred CceEEEeCcchHHHHHHHHHHHH
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~ 359 (623)
+..|+|+|||.||+..|-.|...
T Consensus 4 ~~dVvIvG~G~aGl~~A~~La~~ 26 (397)
T 3cgv_A 4 TYDVLVVGGGPGGSTAARYAAKY 26 (397)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT
T ss_pred cCCEEEECcCHHHHHHHHHHHHC
Confidence 45799999999999999888763
No 282
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=61.99 E-value=13 Score=38.35 Aligned_cols=92 Identities=15% Similarity=0.269 Sum_probs=51.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHh-hhhcccccCCC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKV-NEISRQGLWEG 416 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~-~~~~~~~~~~~ 416 (623)
.||+|+|||-.|--+|+.|.+ ..++.++|+.. .+..-++.. .... -...+.
T Consensus 17 mkilvlGaG~vG~~~~~~L~~----------------~~~v~~~~~~~-----------~~~~~~~~~~~~~~-~d~~d~ 68 (365)
T 3abi_A 17 MKVLILGAGNIGRAIAWDLKD----------------EFDVYIGDVNN-----------ENLEKVKEFATPLK-VDASNF 68 (365)
T ss_dssp CEEEEECCSHHHHHHHHHHTT----------------TSEEEEEESCH-----------HHHHHHTTTSEEEE-CCTTCH
T ss_pred cEEEEECCCHHHHHHHHHHhc----------------CCCeEEEEcCH-----------HHHHHHhccCCcEE-EecCCH
Confidence 589999999888777766532 13567777631 111111100 0000 001223
Q ss_pred CCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCC
Q 040403 417 ASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSN 464 (623)
Q Consensus 417 ~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSN 464 (623)
.+|.++++ +.|++|-+ .|.-+..+++++. .+... . +|-+|-
T Consensus 69 ~~l~~~~~--~~DvVi~~--~p~~~~~~v~~~~-~~~g~-~-yvD~s~ 109 (365)
T 3abi_A 69 DKLVEVMK--EFELVIGA--LPGFLGFKSIKAA-IKSKV-D-MVDVSF 109 (365)
T ss_dssp HHHHHHHT--TCSEEEEC--CCGGGHHHHHHHH-HHHTC-E-EEECCC
T ss_pred HHHHHHHh--CCCEEEEe--cCCcccchHHHHH-HhcCc-c-eEeeec
Confidence 45888888 78998854 4666888888876 33332 2 455664
No 283
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=61.98 E-value=6.2 Score=41.63 Aligned_cols=34 Identities=26% Similarity=0.390 Sum_probs=27.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
||||+|+|.||+-.|..+.+. |.+ -+|.++|+..
T Consensus 2 KVvIIG~G~AGl~aA~~l~~~-----g~~--------~~V~lie~~~ 35 (437)
T 4eqs_A 2 KIVVVGAVAGGATCASQIRRL-----DKE--------SDIIIFEKDR 35 (437)
T ss_dssp CEEEECCSTTHHHHHHHHHHH-----CSS--------SCEEEEESSS
T ss_pred eEEEECCCHHHHHHHHHHHhC-----CCC--------CcEEEEeCCC
Confidence 799999999999999888654 632 3688998754
No 284
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=61.79 E-value=6.8 Score=38.42 Aligned_cols=32 Identities=31% Similarity=0.486 Sum_probs=25.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
..|+|+|||.+|+..|..|... |+ ++.++|+.
T Consensus 3 ~dV~IIGaG~~Gl~~A~~L~~~-----G~----------~V~vlE~~ 34 (336)
T 1yvv_A 3 VPIAIIGTGIAGLSAAQALTAA-----GH----------QVHLFDKS 34 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT-----TC----------CEEEECSS
T ss_pred ceEEEECCcHHHHHHHHHHHHC-----CC----------cEEEEECC
Confidence 4799999999999999988774 85 36667765
No 285
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Probab=61.58 E-value=6.2 Score=39.40 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=28.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcc
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLI 387 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi 387 (623)
..|+|+|||.+|+.+|-.|.+. |+ ++.++|+....
T Consensus 3 ~dvvIIG~Gi~Gl~~A~~La~~-----G~----------~V~vle~~~~~ 37 (372)
T 2uzz_A 3 YDLIIIGSGSVGAAAGYYATRA-----GL----------NVLMTDAHMPP 37 (372)
T ss_dssp EEEEESCTTHHHHHHHHHHHHT-----TC----------CEEEECSSCSS
T ss_pred CCEEEECCCHHHHHHHHHHHHC-----CC----------eEEEEecCCCC
Confidence 4799999999999999988764 73 58889887543
No 286
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2
Probab=61.45 E-value=7.9 Score=39.59 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=20.8
Q ss_pred CCceEEEeCcchHHHHHHHHHHHH
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~ 359 (623)
...+|+|+|||.||+..|..|...
T Consensus 4 ~~~~V~IVGaG~aGl~~A~~L~~~ 27 (397)
T 2vou_A 4 TTDRIAVVGGSISGLTAALMLRDA 27 (397)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHT
T ss_pred CCCcEEEECCCHHHHHHHHHHHhC
Confidence 457899999999999999888764
No 287
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=61.43 E-value=7.6 Score=39.74 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=20.5
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHH
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~ 359 (623)
.+..+|+|+|||.||+..|..|...
T Consensus 21 ~~~~dV~IVGaG~aGl~~A~~La~~ 45 (407)
T 3rp8_A 21 QGHMKAIVIGAGIGGLSAAVALKQS 45 (407)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhC
Confidence 4567999999999999999888774
No 288
>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6
Probab=61.23 E-value=19 Score=34.71 Aligned_cols=21 Identities=14% Similarity=0.241 Sum_probs=18.9
Q ss_pred eEEEeCcchHHHHHHHHHHHH
Q 040403 339 KIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~ 359 (623)
||.|+|+|..|..+|..|...
T Consensus 2 ~I~iIG~G~mG~~la~~l~~~ 22 (264)
T 1i36_A 2 RVGFIGFGEVAQTLASRLRSR 22 (264)
T ss_dssp EEEEESCSHHHHHHHHHHHHT
T ss_pred eEEEEechHHHHHHHHHHHHC
Confidence 799999999999999988764
No 289
>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}
Probab=60.74 E-value=13 Score=37.81 Aligned_cols=33 Identities=15% Similarity=0.223 Sum_probs=26.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.||.|+|+|..|.++|..+... |. -+++++|+.
T Consensus 25 m~IgvIG~G~mG~~lA~~L~~~-----G~---------~~V~~~dr~ 57 (317)
T 4ezb_A 25 TTIAFIGFGEAAQSIAGGLGGR-----NA---------ARLAAYDLR 57 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT-----TC---------SEEEEECGG
T ss_pred CeEEEECccHHHHHHHHHHHHc-----CC---------CeEEEEeCC
Confidence 5899999999999999988764 61 357788875
No 290
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}
Probab=60.63 E-value=11 Score=39.34 Aligned_cols=33 Identities=12% Similarity=0.249 Sum_probs=27.0
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
-.||.|+|+|..|..+|..|... | .+++.+|++
T Consensus 8 ~~kIgIIG~G~mG~slA~~L~~~-----G----------~~V~~~dr~ 40 (341)
T 3ktd_A 8 SRPVCILGLGLIGGSLLRDLHAA-----N----------HSVFGYNRS 40 (341)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHT-----T----------CCEEEECSC
T ss_pred CCEEEEEeecHHHHHHHHHHHHC-----C----------CEEEEEeCC
Confidence 36899999999999999888764 6 357888874
No 291
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=60.54 E-value=9 Score=39.79 Aligned_cols=38 Identities=29% Similarity=0.371 Sum_probs=30.5
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcc
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLI 387 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi 387 (623)
..+|||+|||.||+..|..|.+. |.+ .+|.++|+..-+
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~-----g~~--------~~V~lie~~~~~ 44 (408)
T 2gqw_A 7 KAPVVVLGAGLASVSFVAELRQA-----GYQ--------GLITVVGDEAER 44 (408)
T ss_dssp CSSEEEECCSHHHHHHHHHHHHH-----TCC--------SCEEEEESSCSC
T ss_pred CCcEEEECChHHHHHHHHHHHcc-----CCC--------CeEEEEECCCCC
Confidence 46899999999999999988774 742 369999987543
No 292
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}
Probab=60.48 E-value=6.9 Score=39.81 Aligned_cols=23 Identities=13% Similarity=0.287 Sum_probs=20.1
Q ss_pred CceEEEeCcchHHHHHHHHHHHH
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~ 359 (623)
+.+|+|+|||.||+..|..|.+.
T Consensus 6 ~~dVvIVGaG~aGl~~A~~L~~~ 28 (399)
T 2x3n_A 6 HIDVLINGCGIGGAMLAYLLGRQ 28 (399)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT
T ss_pred cCCEEEECcCHHHHHHHHHHHhC
Confidence 46899999999999999888764
No 293
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=60.36 E-value=7.7 Score=39.34 Aligned_cols=36 Identities=22% Similarity=0.447 Sum_probs=29.1
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcc
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLI 387 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi 387 (623)
+..|||+|||.+|+.+|-.|.+. |. ++.++|+....
T Consensus 4 ~~DVvIIGaG~~Gl~~A~~La~~-----G~----------~V~vlE~~~~~ 39 (397)
T 2oln_A 4 SYDVVVVGGGPVGLATAWQVAER-----GH----------RVLVLERHTFF 39 (397)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT-----TC----------CEEEEESSCTT
T ss_pred cCCEEEECCCHHHHHHHHHHHHC-----CC----------eEEEEeCCCCC
Confidence 35799999999999999888764 73 58888887554
No 294
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=59.74 E-value=5.9 Score=36.90 Aligned_cols=87 Identities=13% Similarity=0.111 Sum_probs=47.0
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhh--hcccccC
Q 040403 338 QKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNE--ISRQGLW 414 (623)
Q Consensus 338 ~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~--~~~~~~~ 414 (623)
.+|+|.|| |-.|..+++.|++ ++ | -++++++++.- +.+. .++..... +-.....
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~---~~-g----------~~V~~~~r~~~-----~~~~----~~~~~~~~~~~~~~D~~ 62 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLT---YT-D----------MHITLYGRQLK-----TRIP----PEIIDHERVTVIEGSFQ 62 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHH---HC-C----------CEEEEEESSHH-----HHSC----HHHHTSTTEEEEECCTT
T ss_pred EEEEEEeCCcHHHHHHHHHHHh---cC-C----------ceEEEEecCcc-----ccch----hhccCCCceEEEECCCC
Confidence 45999996 7777777777762 22 6 35777777410 0111 11100000 0000011
Q ss_pred CCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHc
Q 040403 415 EGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAM 449 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M 449 (623)
+..++.++++ +.|++|=+.+..+.-++.+++.|
T Consensus 63 d~~~~~~~~~--~~d~vv~~ag~~n~~~~~~~~~~ 95 (221)
T 3r6d_A 63 NPGXLEQAVT--NAEVVFVGAMESGSDMASIVKAL 95 (221)
T ss_dssp CHHHHHHHHT--TCSEEEESCCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHc--CCCEEEEcCCCCChhHHHHHHHH
Confidence 2235777887 78999977654322267778887
No 295
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*
Probab=59.66 E-value=8.2 Score=42.25 Aligned_cols=35 Identities=26% Similarity=0.333 Sum_probs=28.9
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
.+.+|||+|||.||+..|..|.+. |+ ++.++|+..
T Consensus 8 ~~~dVvIIGaG~aGl~aA~~L~~~-----g~----------~v~iiE~~~ 42 (545)
T 3uox_A 8 PALDAVVIGAGVTGIYQAFLINQA-----GM----------KVLGIEAGE 42 (545)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHT-----TC----------CEEEECSSS
T ss_pred CCCCEEEECccHHHHHHHHHHHhC-----CC----------CEEEEeCCC
Confidence 467999999999999999998763 73 488899864
No 296
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=59.51 E-value=7.8 Score=41.03 Aligned_cols=33 Identities=27% Similarity=0.503 Sum_probs=27.6
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+.+|+|+|||.||+..|..+.+. | .++.++|+.
T Consensus 4 ~~dVvIIGgG~aGl~aA~~l~~~-----g----------~~V~liE~~ 36 (463)
T 2r9z_A 4 HFDLIAIGGGSGGLAVAEKAAAF-----G----------KRVALIESK 36 (463)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHT-----T----------CCEEEEESS
T ss_pred cCcEEEECCCHHHHHHHHHHHhC-----C----------CcEEEEcCC
Confidence 56899999999999999888763 6 358889985
No 297
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=59.48 E-value=12 Score=38.20 Aligned_cols=41 Identities=20% Similarity=0.296 Sum_probs=25.5
Q ss_pred HHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCC
Q 040403 419 LVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSN 464 (623)
Q Consensus 419 L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSN 464 (623)
+...+++.+||++||..+-. +-.+ ... |+....|+|.=-+|
T Consensus 84 ~~~~l~~~~PDvVi~~g~~~---s~p~-~la-A~~~~iP~vihe~n 124 (365)
T 3s2u_A 84 ALRVIRQLRPVCVLGLGGYV---TGPG-GLA-ARLNGVPLVIHEQN 124 (365)
T ss_dssp HHHHHHHHCCSEEEECSSST---HHHH-HHH-HHHTTCCEEEEECS
T ss_pred HHHHHHhcCCCEEEEcCCcc---hHHH-HHH-HHHcCCCEEEEecc
Confidence 45678889999999976532 1111 111 34467898875555
No 298
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=59.34 E-value=47 Score=30.20 Aligned_cols=94 Identities=15% Similarity=0.204 Sum_probs=50.7
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCC
Q 040403 339 KIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGA 417 (623)
Q Consensus 339 riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~ 417 (623)
||+|.|| |-.|..+++.|++. | -+++.++++. +....+. ..-.+-.....+..
T Consensus 2 kvlVtGatG~iG~~l~~~L~~~-----g----------~~V~~~~R~~----------~~~~~~~-~~~~~~~~D~~d~~ 55 (221)
T 3ew7_A 2 KIGIIGATGRAGSRILEEAKNR-----G----------HEVTAIVRNA----------GKITQTH-KDINILQKDIFDLT 55 (221)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT-----T----------CEEEEEESCS----------HHHHHHC-SSSEEEECCGGGCC
T ss_pred eEEEEcCCchhHHHHHHHHHhC-----C----------CEEEEEEcCc----------hhhhhcc-CCCeEEeccccChh
Confidence 7999997 77777777776653 6 3577777741 0001110 00000000001111
Q ss_pred CHHHHHhhcCCcEEEeccCCCCC-------CCHHHHHHcccCCCCCCEEEecC
Q 040403 418 SLVEVVQQVKPDVLLGLSAVGGL-------FSKEVLEAMRGSTSTRPAIFAMS 463 (623)
Q Consensus 418 ~L~e~V~~vkptvLIG~S~~~g~-------Ft~evv~~M~a~~~erPIIFaLS 463 (623)
+ ++++ ++|++|=+.+.+.. .++.++++| .+....-+||.-|
T Consensus 56 ~--~~~~--~~d~vi~~ag~~~~~~~~~~~~~~~l~~a~-~~~~~~~~v~~SS 103 (221)
T 3ew7_A 56 L--SDLS--DQNVVVDAYGISPDEAEKHVTSLDHLISVL-NGTVSPRLLVVGG 103 (221)
T ss_dssp H--HHHT--TCSEEEECCCSSTTTTTSHHHHHHHHHHHH-CSCCSSEEEEECC
T ss_pred h--hhhc--CCCEEEECCcCCccccchHHHHHHHHHHHH-HhcCCceEEEEec
Confidence 1 6776 78999987765432 136788888 4444445666544
No 299
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=59.31 E-value=8.9 Score=40.25 Aligned_cols=33 Identities=18% Similarity=0.350 Sum_probs=27.5
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+.+|+|+|||.||+..|..+.+. | .++.++|+.
T Consensus 6 ~~dvvIIGaG~aGl~aA~~l~~~-----g----------~~V~liE~~ 38 (470)
T 1dxl_A 6 ENDVVIIGGGPGGYVAAIKAAQL-----G----------FKTTCIEKR 38 (470)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHH-----T----------CCEEEEECS
T ss_pred cCCEEEECCCHHHHHHHHHHHHC-----C----------CeEEEEeCC
Confidence 46899999999999999888764 6 358889986
No 300
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=59.30 E-value=6.5 Score=38.59 Aligned_cols=32 Identities=13% Similarity=0.225 Sum_probs=26.2
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEcc
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDA 383 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~ 383 (623)
..+|+|+|||.||+..|..|... |+ ++.++|+
T Consensus 8 ~~~vvIIG~G~aGl~~A~~l~~~-----g~----------~v~lie~ 39 (333)
T 1vdc_A 8 NTRLCIVGSGPAAHTAAIYAARA-----EL----------KPLLFEG 39 (333)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT-----TC----------CCEEECC
T ss_pred CCCEEEECcCHHHHHHHHHHHHC-----CC----------eEEEEec
Confidence 46899999999999999988763 74 4677876
No 301
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=59.16 E-value=9.2 Score=36.30 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=26.6
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+...||.|+|+|..|..+|..+... | .+++++|++
T Consensus 17 ~~~~~I~iiG~G~mG~~la~~l~~~-----g----------~~V~~~~~~ 51 (209)
T 2raf_A 17 FQGMEITIFGKGNMGQAIGHNFEIA-----G----------HEVTYYGSK 51 (209)
T ss_dssp ---CEEEEECCSHHHHHHHHHHHHT-----T----------CEEEEECTT
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC-----C----------CEEEEEcCC
Confidence 6778999999999999999988764 6 357888763
No 302
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=59.10 E-value=4.9 Score=40.26 Aligned_cols=103 Identities=17% Similarity=0.221 Sum_probs=58.2
Q ss_pred CCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHH----hHHHhhhhc
Q 040403 335 FPKQKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKP----FARKVNEIS 409 (623)
Q Consensus 335 l~d~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~----fA~~~~~~~ 409 (623)
++..+|+|.|| |-.|-.|++.|++. | .+++.+++.. .-.+.+.. +....-.+-
T Consensus 8 M~~~~IlVtGatG~iG~~l~~~L~~~-----g----------~~V~~l~R~~-------~~~~~~~~~~~~l~~~~v~~~ 65 (346)
T 3i6i_A 8 SPKGRVLIAGATGFIGQFVATASLDA-----H----------RPTYILARPG-------PRSPSKAKIFKALEDKGAIIV 65 (346)
T ss_dssp ---CCEEEECTTSHHHHHHHHHHHHT-----T----------CCEEEEECSS-------CCCHHHHHHHHHHHHTTCEEE
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHC-----C----------CCEEEEECCC-------CCChhHHHHHHHHHhCCcEEE
Confidence 45579999999 88888888777653 6 3477777752 01122221 111000100
Q ss_pred ccccCCCCCHHHHHhhcCCcEEEeccCCCCC-CCHHHHHHcccCCC-CCCEEE
Q 040403 410 RQGLWEGASLVEVVQQVKPDVLLGLSAVGGL-FSKEVLEAMRGSTS-TRPAIF 460 (623)
Q Consensus 410 ~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~-Ft~evv~~M~a~~~-erPIIF 460 (623)
.....+..+|.++++..++|++|=+.+..+. -+..+++++ .+.. -+-+|+
T Consensus 66 ~~Dl~d~~~l~~~~~~~~~d~Vi~~a~~~n~~~~~~l~~aa-~~~g~v~~~v~ 117 (346)
T 3i6i_A 66 YGLINEQEAMEKILKEHEIDIVVSTVGGESILDQIALVKAM-KAVGTIKRFLP 117 (346)
T ss_dssp ECCTTCHHHHHHHHHHTTCCEEEECCCGGGGGGHHHHHHHH-HHHCCCSEEEC
T ss_pred EeecCCHHHHHHHHhhCCCCEEEECCchhhHHHHHHHHHHH-HHcCCceEEee
Confidence 0001123457888888899999988765333 367899998 3333 344554
No 303
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=58.97 E-value=6.8 Score=39.91 Aligned_cols=34 Identities=29% Similarity=0.438 Sum_probs=26.9
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
+.+|+|+|||.||+..|-.|.+. |+ ++.++|+.-
T Consensus 5 ~~dVvIIGgG~aGl~~A~~La~~-----G~----------~V~v~E~~~ 38 (421)
T 3nix_A 5 KVDVLVIGAGPAGTVAASLVNKS-----GF----------KVKIVEKQK 38 (421)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTT-----TC----------CEEEECSSC
T ss_pred cCcEEEECCCHHHHHHHHHHHhC-----CC----------CEEEEeCCC
Confidence 46899999999999999877653 74 477777763
No 304
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=58.78 E-value=9.3 Score=38.95 Aligned_cols=32 Identities=34% Similarity=0.369 Sum_probs=25.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
+|+|+|||.+|+..|-.|.+. |. ++.++++..
T Consensus 2 dVvVIGaGiaGLsaA~~La~~-----G~----------~V~vlE~~~ 33 (425)
T 3ka7_A 2 KTVVIGAGLGGLLSAARLSKA-----GH----------EVEVFERLP 33 (425)
T ss_dssp EEEEECCBHHHHHHHHHHHHT-----TC----------EEEEECSSS
T ss_pred cEEEECCCHHHHHHHHHHHhC-----CC----------ceEEEeCCC
Confidence 799999999999999888774 73 566777653
No 305
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=58.55 E-value=9.4 Score=39.22 Aligned_cols=32 Identities=28% Similarity=0.421 Sum_probs=25.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
+|+|+|||.+|+..|-.|.+. |. ++.++++..
T Consensus 2 dVvVIGaGiaGLsaA~~La~~-----G~----------~V~vlE~~~ 33 (421)
T 3nrn_A 2 RAVVVGAGLGGLLAGAFLARN-----GH----------EIIVLEKSA 33 (421)
T ss_dssp EEEEESCSHHHHHHHHHHHHT-----TC----------EEEEECSSS
T ss_pred cEEEECCCHHHHHHHHHHHHC-----CC----------eEEEEeCCC
Confidence 799999999999999888764 73 567777653
No 306
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=58.53 E-value=8.2 Score=39.83 Aligned_cols=37 Identities=19% Similarity=0.297 Sum_probs=29.6
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcc
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLI 387 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi 387 (623)
+..|||+|||.+|+..|-.|.+. |. +++.++|+....
T Consensus 6 ~~dVvIIGgG~aGlsaA~~La~~-----G~---------~~V~vlE~~~~~ 42 (438)
T 3dje_A 6 SSSLLIVGAGTWGTSTALHLARR-----GY---------TNVTVLDPYPVP 42 (438)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHT-----TC---------CCEEEEESSCSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHc-----CC---------CcEEEEeCCCCC
Confidence 46899999999999999888764 74 268888887554
No 307
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Probab=58.31 E-value=7.9 Score=37.86 Aligned_cols=87 Identities=18% Similarity=0.249 Sum_probs=52.7
Q ss_pred CceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCC
Q 040403 337 KQKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWE 415 (623)
Q Consensus 337 d~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~ 415 (623)
..+|+|.|| |-.|..+++.|++ + | -+++++++. ...|+.+
T Consensus 3 ~~~ilVtGatG~iG~~l~~~L~~----~-g----------~~v~~~~r~-----~~~D~~d------------------- 43 (321)
T 1e6u_A 3 KQRVFIAGHRGMVGSAIRRQLEQ----R-G----------DVELVLRTR-----DELNLLD------------------- 43 (321)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTT----C-T----------TEEEECCCT-----TTCCTTC-------------------
T ss_pred CCEEEEECCCcHHHHHHHHHHHh----C-C----------CeEEEEecC-----ccCCccC-------------------
Confidence 468999996 7777777776654 2 5 246666553 1112221
Q ss_pred CCCHHHHHhhcCCcEEEeccCCCCC-----------------CCHHHHHHcccCCCCCCEEEecC
Q 040403 416 GASLVEVVQQVKPDVLLGLSAVGGL-----------------FSKEVLEAMRGSTSTRPAIFAMS 463 (623)
Q Consensus 416 ~~~L~e~V~~vkptvLIG~S~~~g~-----------------Ft~evv~~M~a~~~erPIIFaLS 463 (623)
..++.++++.+++|++|=+.+..+. .|..+++++ .+..-+.+||.=|
T Consensus 44 ~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~-~~~~~~~~v~~SS 107 (321)
T 1e6u_A 44 SRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAA-HQNDVNKLLFLGS 107 (321)
T ss_dssp HHHHHHHHHHHCCSEEEECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHH-HHTTCCEEEEECC
T ss_pred HHHHHHHHHhcCCCEEEEcCeecCCcchhhhCHHHHHHHHHHHHHHHHHHH-HHhCCCeEEEEcc
Confidence 1236667777789999988765431 234567777 4444456777644
No 308
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=58.04 E-value=7.6 Score=41.25 Aligned_cols=34 Identities=29% Similarity=0.443 Sum_probs=28.2
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.+.+|+|+|||.||+..|..+.+. | .++.++|+.
T Consensus 10 ~~~dVvVIGgG~aGl~aA~~l~~~-----g----------~~V~liE~~ 43 (479)
T 2hqm_A 10 KHYDYLVIGGGSGGVASARRAASY-----G----------AKTLLVEAK 43 (479)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHT-----S----------CCEEEEESS
T ss_pred ccCCEEEEcCCHHHHHHHHHHHHC-----C----------CcEEEEeCC
Confidence 357899999999999999988763 6 358899985
No 309
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=57.96 E-value=17 Score=35.93 Aligned_cols=95 Identities=23% Similarity=0.306 Sum_probs=55.0
Q ss_pred CCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhccccc
Q 040403 335 FPKQKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGL 413 (623)
Q Consensus 335 l~d~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~ 413 (623)
++..+|+|.|| |-.|..+++.|++. | -+++.+|+.. ...++. +.. -+ .
T Consensus 17 ~~~~~vlVtGatG~iG~~l~~~L~~~-----G----------~~V~~~~r~~----~~~~~~-----~~~--~D-----l 65 (347)
T 4id9_A 17 RGSHMILVTGSAGRVGRAVVAALRTQ-----G----------RTVRGFDLRP----SGTGGE-----EVV--GS-----L 65 (347)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHT-----T----------CCEEEEESSC----CSSCCS-----EEE--SC-----T
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhC-----C----------CEEEEEeCCC----CCCCcc-----EEe--cC-----c
Confidence 77899999998 88888887777653 7 3477777742 111111 100 01 1
Q ss_pred CCCCCHHHHHhhcCCcEEEeccCCCCCC--------------CHHHHHHcccCCCCCCEEEecC
Q 040403 414 WEGASLVEVVQQVKPDVLLGLSAVGGLF--------------SKEVLEAMRGSTSTRPAIFAMS 463 (623)
Q Consensus 414 ~~~~~L~e~V~~vkptvLIG~S~~~g~F--------------t~evv~~M~a~~~erPIIFaLS 463 (623)
....++.++++ ++|++|=+.+....- |..+++++ .+..-+.|||.=|
T Consensus 66 ~d~~~~~~~~~--~~d~vih~A~~~~~~~~~~~~~~~~nv~~~~~ll~a~-~~~~~~~~V~~SS 126 (347)
T 4id9_A 66 EDGQALSDAIM--GVSAVLHLGAFMSWAPADRDRMFAVNVEGTRRLLDAA-SAAGVRRFVFASS 126 (347)
T ss_dssp TCHHHHHHHHT--TCSEEEECCCCCCSSGGGHHHHHHHHTHHHHHHHHHH-HHTTCSEEEEEEE
T ss_pred CCHHHHHHHHh--CCCEEEECCcccCcchhhHHHHHHHHHHHHHHHHHHH-HHcCCCeEEEECC
Confidence 12234777887 899999777543221 34578888 5555567888655
No 310
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*
Probab=57.85 E-value=27 Score=34.09 Aligned_cols=36 Identities=17% Similarity=0.269 Sum_probs=24.4
Q ss_pred CCCCceEEEeCcc-h--HHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 334 DFPKQKIVVAGAG-S--AGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 334 ~l~d~riv~~GAG-s--Ag~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
++++.++||.||. . .|..||+.+.+ + | -+++++|+.
T Consensus 23 ~l~~k~vlVTGasg~~GIG~~ia~~l~~----~-G----------~~V~~~~r~ 61 (280)
T 3nrc_A 23 FLAGKKILITGLLSNKSIAYGIAKAMHR----E-G----------AELAFTYVG 61 (280)
T ss_dssp TTTTCEEEECCCCSTTCHHHHHHHHHHH----T-T----------CEEEEEECT
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHH----c-C----------CEEEEeeCc
Confidence 4788999999984 3 44445555544 3 7 358888875
No 311
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Probab=57.84 E-value=4.8 Score=44.55 Aligned_cols=108 Identities=15% Similarity=0.162 Sum_probs=61.9
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccC--------CCCCCChhhHHhHHHh-
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITE--------DRENIDPDAKPFARKV- 405 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~--------~r~~l~~~~~~fA~~~- 405 (623)
|+..||+|+|+|..|.-||+.|+.+ |+ ++|.++|.+=+=.. ...++...|..-|...
T Consensus 30 L~~~~VlvvG~GGlGseiak~La~a-----GV---------g~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l 95 (531)
T 1tt5_A 30 LESAHVCLINATATGTEILKNLVLP-----GI---------GSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFL 95 (531)
T ss_dssp HHHCEEEEECCSHHHHHHHHHHHTT-----TC---------SEEEEECCCBBCHHHHHHCTTCCGGGBTSBHHHHHHHHH
T ss_pred HhcCeEEEECcCHHHHHHHHHHHHc-----CC---------CeEEEEeCCEechhhcccCccCChhhcCcHHHHHHHHHH
Confidence 6778999999999999999999886 96 78999997632111 0112322333322211
Q ss_pred hhhcccc--cCCCCCHHH-------HHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEe
Q 040403 406 NEISRQG--LWEGASLVE-------VVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFA 461 (623)
Q Consensus 406 ~~~~~~~--~~~~~~L~e-------~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFa 461 (623)
.++.+.. ......+.+ .++ +.|++|.++. ..=+.-.|-.+ +.....|+|.+
T Consensus 96 ~~lNp~v~v~~~~~~~~~~~~~~~~~~~--~~DvVi~~~d--~~~~r~~ln~~-c~~~~iplI~~ 155 (531)
T 1tt5_A 96 QELNSDVSGSFVEESPENLLDNDPSFFC--RFTVVVATQL--PESTSLRLADV-LWNSQIPLLIC 155 (531)
T ss_dssp HTTCTTSBCCEESSCHHHHHHSCGGGGG--GCSEEEEESC--CHHHHHHHHHH-HHHTTCCEEEE
T ss_pred HHhCCCCeEEEeCCCcchhhhhhHHHhc--CCCEEEEeCC--CHHHHHHHHHH-HHHcCCCEEEE
Confidence 1111110 001123433 233 6789988763 22244555555 55567888876
No 312
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...
Probab=57.77 E-value=9.3 Score=38.69 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 040403 338 QKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~ 359 (623)
.+|+|+|||.||+..|-.|...
T Consensus 3 ~dV~IvGaG~aGl~~A~~L~~~ 24 (394)
T 1k0i_A 3 TQVAIIGAGPSGLLLGQLLHKA 24 (394)
T ss_dssp CSEEEECCSHHHHHHHHHHHHH
T ss_pred ccEEEECCCHHHHHHHHHHHHC
Confidence 4799999999999999888774
No 313
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=57.69 E-value=6.4 Score=40.02 Aligned_cols=36 Identities=25% Similarity=0.461 Sum_probs=30.5
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 334 DFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 334 ~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+|++.+|||+|+|..|..-+++|+.+ | .++.++|.+
T Consensus 10 ~l~~k~VLVVGgG~va~rka~~Ll~~-----G----------a~VtViap~ 45 (274)
T 1kyq_A 10 QLKDKRILLIGGGEVGLTRLYKLMPT-----G----------CKLTLVSPD 45 (274)
T ss_dssp CCTTCEEEEEEESHHHHHHHHHHGGG-----T----------CEEEEEEEE
T ss_pred EcCCCEEEEECCcHHHHHHHHHHHhC-----C----------CEEEEEcCC
Confidence 38899999999999999999998875 7 458888864
No 314
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*
Probab=57.68 E-value=8 Score=42.41 Aligned_cols=35 Identities=31% Similarity=0.432 Sum_probs=28.7
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
.+.+|||+|||.||+..|..|.+. |+ ++.++|+..
T Consensus 20 ~~~dVvIIGaG~aGl~aA~~L~~~-----G~----------~v~iiE~~~ 54 (549)
T 4ap3_A 20 TSYDVVVVGAGIAGLYAIHRFRSQ-----GL----------TVRAFEAAS 54 (549)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHT-----TC----------CEEEECSSS
T ss_pred CCCCEEEECchHHHHHHHHHHHhC-----CC----------CEEEEeCCC
Confidence 457899999999999999988763 73 588898864
No 315
>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*
Probab=57.67 E-value=7.2 Score=42.59 Aligned_cols=35 Identities=26% Similarity=0.489 Sum_probs=20.9
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+++.+++|.|||.+|.++|..+.+ + |. +++++++.
T Consensus 362 l~~k~vlV~GaGGig~aia~~L~~----~-G~----------~V~i~~R~ 396 (523)
T 2o7s_A 362 LASKTVVVIGAGGAGKALAYGAKE----K-GA----------KVVIANRT 396 (523)
T ss_dssp ----CEEEECCSHHHHHHHHHHHH----H-CC-----------CEEEESS
T ss_pred cCCCEEEEECCcHHHHHHHHHHHH----C-CC----------EEEEEECC
Confidence 778899999998555555555544 3 73 47888774
No 316
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*
Probab=57.66 E-value=8.9 Score=39.39 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.1
Q ss_pred CceEEEeCcchHHHHHHHHHHHH
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~ 359 (623)
+.+|+|+|||.||+..|..|...
T Consensus 4 ~~dVvIVGaG~aGl~~A~~L~~~ 26 (410)
T 3c96_A 4 PIDILIAGAGIGGLSCALALHQA 26 (410)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT
T ss_pred CCeEEEECCCHHHHHHHHHHHhC
Confidence 46899999999999999888764
No 317
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=57.26 E-value=9.1 Score=40.31 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=27.2
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+.+|+|+|||.||+..|..+.+. | .++.++|+.
T Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~-----g----------~~V~lie~~ 34 (468)
T 2qae_A 2 PYDVVVIGGGPGGYVASIKAAQL-----G----------MKTACVEKR 34 (468)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHT-----T----------CCEEEEESS
T ss_pred CCCEEEECCCHHHHHHHHHHHHC-----C----------CeEEEEeCC
Confidence 45899999999999999877663 6 358899986
No 318
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=57.13 E-value=8.5 Score=40.88 Aligned_cols=34 Identities=24% Similarity=0.378 Sum_probs=27.3
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
+.+|+|+|||.||+..|..+.+. | .++.++|++.
T Consensus 25 ~~dVvVIGgG~aGl~aA~~la~~-----G----------~~V~liEk~~ 58 (491)
T 3urh_A 25 AYDLIVIGSGPGGYVCAIKAAQL-----G----------MKVAVVEKRS 58 (491)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHT-----T----------CCEEEEESSS
T ss_pred cCCEEEECCCHHHHHHHHHHHHC-----C----------CeEEEEecCC
Confidence 45799999999999999888763 7 3588999754
No 319
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=57.00 E-value=10 Score=38.16 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=28.7
Q ss_pred CceEEEeCcchHHHHHHHHHHH-HHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARK-TMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~-~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
+..|+|+|||.+|+.+|-.|.+ . |. .++.++|+..
T Consensus 21 ~~dVvIIG~G~~Gl~~A~~La~~~-----G~---------~~V~vlE~~~ 56 (405)
T 2gag_B 21 SYDAIIVGGGGHGLATAYFLAKNH-----GI---------TNVAVLEKGW 56 (405)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHH-----CC---------CCEEEECSSS
T ss_pred cCCEEEECcCHHHHHHHHHHHHhc-----CC---------CcEEEEeCCC
Confidence 5689999999999999998876 4 61 3588899875
No 320
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}
Probab=56.70 E-value=22 Score=36.75 Aligned_cols=48 Identities=25% Similarity=0.316 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEcc
Q 040403 318 VAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDA 383 (623)
Q Consensus 318 lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~ 383 (623)
++..+.|++..+.+ .+++|+|+|||..|...+++.... |. ++++.+|+
T Consensus 171 ~~ta~~al~~~~~~----~g~~VlV~GaG~vG~~aiqlak~~-----Ga---------~~Vi~~~~ 218 (398)
T 2dph_A 171 LPTGFHGCVSAGVK----PGSHVYIAGAGPVGRCAAAGARLL-----GA---------ACVIVGDQ 218 (398)
T ss_dssp HHHHHHHHHHTTCC----TTCEEEEECCSHHHHHHHHHHHHH-----TC---------SEEEEEES
T ss_pred HHHHHHHHHHcCCC----CCCEEEEECCCHHHHHHHHHHHHc-----CC---------CEEEEEcC
Confidence 44445666655544 578999999998776666555432 73 46888886
No 321
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=56.62 E-value=9.7 Score=39.61 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=27.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
.+|||+|||.||+..|..|... .. | -+|.++|+.-
T Consensus 3 ~~vvIIGgG~aGl~aA~~L~~~--~~-g----------~~Vtlie~~~ 37 (430)
T 3h28_A 3 KHVVVIGGGVGGIATAYNLRNL--MP-D----------LKITLISDRP 37 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHH--CT-T----------CEEEEECSSS
T ss_pred CCEEEECccHHHHHHHHHHHcC--CC-C----------CeEEEECCCC
Confidence 5899999999999999888762 11 3 3688888753
No 322
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=56.44 E-value=8.5 Score=40.68 Aligned_cols=35 Identities=37% Similarity=0.536 Sum_probs=27.0
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCc
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGL 386 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GL 386 (623)
+.+|+|+|||.||+..|..+.+. |. ++.++|+..-
T Consensus 27 ~~dViIIGgG~AGl~aA~~La~~-----G~----------~V~llEk~~~ 61 (417)
T 3v76_A 27 KQDVVIIGAGAAGMMCAIEAGKR-----GR----------RVLVIDHARA 61 (417)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHT-----TC----------CEEEECSSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHC-----CC----------cEEEEeCCCC
Confidence 45899999999999998877663 73 5778887643
No 323
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*
Probab=56.26 E-value=9.3 Score=40.09 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=26.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
.+|+|+|||.||+..|..+.+. | .++.++|+..
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~-----g----------~~V~lie~~~ 34 (455)
T 2yqu_A 2 YDLLVIGAGPGGYVAAIRAAQL-----G----------MKVGVVEKEK 34 (455)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT-----T----------CCEEEEESSS
T ss_pred CCEEEECCChhHHHHHHHHHHC-----C----------CeEEEEeCCC
Confidence 4799999999999999877663 6 3688999863
No 324
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=56.17 E-value=10 Score=36.15 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=26.3
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+..|+|+|+|.+|+-.|..+.+. |+ ++.++++.
T Consensus 3 ~~dVvVVGgG~aGl~aA~~la~~-----g~----------~v~lie~~ 35 (232)
T 2cul_A 3 AYQVLIVGAGFSGAETAFWLAQK-----GV----------RVGLLTQS 35 (232)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHT-----TC----------CEEEEESC
T ss_pred CCCEEEECcCHHHHHHHHHHHHC-----CC----------CEEEEecC
Confidence 45799999999999999888763 73 57777765
No 325
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
Probab=56.13 E-value=9.7 Score=45.44 Aligned_cols=36 Identities=14% Similarity=0.297 Sum_probs=33.0
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
|+..||+|+|+|..|.-||+.|+.+ |+ ++|.++|.+
T Consensus 25 L~~s~VlIvG~GGlGseiak~La~a-----GV---------g~itlvD~D 60 (1015)
T 3cmm_A 25 MQTSNVLILGLKGLGVEIAKNVVLA-----GV---------KSMTVFDPE 60 (1015)
T ss_dssp HTTCEEEEECCSHHHHHHHHHHHHH-----CC---------SEEEEECCS
T ss_pred HhcCEEEEECCChHHHHHHHHHHHc-----CC---------CeEEEecCC
Confidence 7788999999999999999999987 96 789999986
No 326
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=56.08 E-value=8.7 Score=41.43 Aligned_cols=35 Identities=23% Similarity=0.215 Sum_probs=28.9
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
.+.+|||+|||.||+..|..+.+. | .++.++|+..
T Consensus 42 ~~~dVvIIGgG~aGl~aA~~l~~~-----G----------~~V~liE~~~ 76 (523)
T 1mo9_A 42 REYDAIFIGGGAAGRFGSAYLRAM-----G----------GRQLIVDRWP 76 (523)
T ss_dssp SCBSEEEECCSHHHHHHHHHHHHT-----T----------CCEEEEESSS
T ss_pred CcCCEEEECCCHHHHHHHHHHHHC-----C----------CCEEEEeCCC
Confidence 457899999999999999888764 6 3588999864
No 327
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=56.08 E-value=8.8 Score=37.24 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=18.6
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 040403 338 QKIVVAGAGSAGLGVLNAARK 358 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~ 358 (623)
.+|+|+|||.||+..|..+.+
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~ 22 (310)
T 1fl2_A 2 YDVLIVGSGPAGAAAAIYSAR 22 (310)
T ss_dssp EEEEEECCSHHHHHHHHHHHT
T ss_pred CCEEEECcCHHHHHHHHHHHH
Confidence 479999999999999988765
No 328
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=56.04 E-value=9.4 Score=37.34 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=25.3
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
|--|+|+|||+||+-.|..+.+. |+ ++.++|+.
T Consensus 6 ~yDvvIIG~GpAGl~aA~~l~~~-----g~----------~V~liE~~ 38 (312)
T 4gcm_A 6 DFDIAIIGAGPAGMTAAVYASRA-----NL----------KTVMIERG 38 (312)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHT-----TC----------CEEEEESS
T ss_pred CCCEEEECCCHHHHHHHHHHHHC-----CC----------CEEEEecC
Confidence 34689999999999988777653 73 57788864
No 329
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*
Probab=56.02 E-value=23 Score=36.18 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=25.0
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHH
Q 040403 319 AGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARK 358 (623)
Q Consensus 319 Agll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~ 358 (623)
...+.+++..+.. ..+++|+|.|+|..|..++++...
T Consensus 173 ~ta~~al~~~~~~---~~g~~VlV~GaG~vG~~~~q~a~~ 209 (366)
T 1yqd_A 173 ITVYSPLKYFGLD---EPGKHIGIVGLGGLGHVAVKFAKA 209 (366)
T ss_dssp HHHHHHHHHTTCC---CTTCEEEEECCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcC---CCCCEEEEECCCHHHHHHHHHHHH
Confidence 3345566655544 368999999998877766655543
No 330
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=55.97 E-value=7.2 Score=37.97 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=20.3
Q ss_pred CCceEEEeCcchHHHHHHHHHHHH
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~ 359 (623)
...+|+|+|||.||+..|..+.+.
T Consensus 4 ~~~~vvIIG~G~aGl~aA~~l~~~ 27 (320)
T 1trb_A 4 KHSKLLILGSGPAGYTAAVYAARA 27 (320)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTT
T ss_pred CcCCEEEECcCHHHHHHHHHHHHC
Confidence 346899999999999999888763
No 331
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=55.83 E-value=13 Score=36.16 Aligned_cols=36 Identities=17% Similarity=0.382 Sum_probs=25.8
Q ss_pred CCCCceEEEeCcch---HHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 334 DFPKQKIVVAGAGS---AGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 334 ~l~d~riv~~GAGs---Ag~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+|+++++||-||++ .|.+||+.+.+ + | -+++++|++
T Consensus 3 ~l~gK~alVTGaa~~~GIG~aiA~~la~----~-G----------a~Vvi~~r~ 41 (256)
T 4fs3_A 3 NLENKTYVIMGIANKRSIAFGVAKVLDQ----L-G----------AKLVFTYRK 41 (256)
T ss_dssp CCTTCEEEEECCCSTTCHHHHHHHHHHH----T-T----------CEEEEEESS
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHH----C-C----------CEEEEEECC
Confidence 59999999999853 44455555554 3 8 468888875
No 332
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=55.81 E-value=12 Score=40.18 Aligned_cols=36 Identities=17% Similarity=0.330 Sum_probs=28.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCc
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGL 386 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GL 386 (623)
.+|||+|||.||+..|..|.+. |- .-+|.++|+..-
T Consensus 2 ~~VvIIGgG~AGl~aA~~L~~~-----~~--------~~~V~lie~~~~ 37 (565)
T 3ntd_A 2 KKILIIGGVAGGASAAARARRL-----SE--------TAEIIMFERGEY 37 (565)
T ss_dssp CEEEEECSSHHHHHHHHHHHHH-----CS--------SSEEEEECSSSC
T ss_pred CcEEEECCCHHHHHHHHHHHhh-----Cc--------CCCEEEEECCCC
Confidence 4899999999999999888764 42 247899998744
No 333
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Probab=55.62 E-value=36 Score=34.70 Aligned_cols=75 Identities=19% Similarity=0.235 Sum_probs=43.7
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhh-hhcccccC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVN-EISRQGLW 414 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~-~~~~~~~~ 414 (623)
.+++|+|+|||..|...+++.... |. ++++.+|+. +.+..+++.-. +. -....
T Consensus 191 ~g~~VlV~GaG~vG~~aiqlak~~-----Ga---------~~Vi~~~~~-----------~~~~~~a~~lGa~~-vi~~~ 244 (373)
T 1p0f_A 191 PGSTCAVFGLGGVGFSAIVGCKAA-----GA---------SRIIGVGTH-----------KDKFPKAIELGATE-CLNPK 244 (373)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHH-----TC---------SEEEEECSC-----------GGGHHHHHHTTCSE-EECGG
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-----CC---------CeEEEECCC-----------HHHHHHHHHcCCcE-EEecc
Confidence 578999999998777666555443 73 468888752 34555664210 00 00001
Q ss_pred C-CCCHHHHHhhc---CCcEEEeccC
Q 040403 415 E-GASLVEVVQQV---KPDVLLGLSA 436 (623)
Q Consensus 415 ~-~~~L~e~V~~v---kptvLIG~S~ 436 (623)
. ..++.+.++.. +.|++|=+++
T Consensus 245 ~~~~~~~~~i~~~t~gg~Dvvid~~g 270 (373)
T 1p0f_A 245 DYDKPIYEVICEKTNGGVDYAVECAG 270 (373)
T ss_dssp GCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred cccchHHHHHHHHhCCCCCEEEECCC
Confidence 1 13566666543 6788887764
No 334
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=55.32 E-value=8.5 Score=38.16 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=20.7
Q ss_pred CCceEEEeCcchHHHHHHHHHHHH
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~ 359 (623)
...+|+|+|||.||+..|..+...
T Consensus 13 ~~~~vvIIG~G~aGl~aA~~l~~~ 36 (335)
T 2a87_A 13 PVRDVIVIGSGPAGYTAALYAARA 36 (335)
T ss_dssp CCEEEEEECCHHHHHHHHHHHHHT
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC
Confidence 457899999999999999988763
No 335
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*
Probab=55.22 E-value=5.4 Score=42.64 Aligned_cols=24 Identities=33% Similarity=0.614 Sum_probs=21.2
Q ss_pred CCceEEEeCcchHHHHHHHHHHHH
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~ 359 (623)
...+|+|+|||.||+..|..|.++
T Consensus 7 ~~~~VvIIGaG~aGL~AA~~L~~~ 30 (516)
T 1rsg_A 7 AKKKVIIIGAGIAGLKAASTLHQN 30 (516)
T ss_dssp EEEEEEEECCBHHHHHHHHHHHHT
T ss_pred CCCcEEEECCCHHHHHHHHHHHhc
Confidence 457899999999999999998874
No 336
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=55.11 E-value=7.9 Score=40.76 Aligned_cols=33 Identities=27% Similarity=0.486 Sum_probs=27.4
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+.+|+|+|||.||+..|..+.+. | .++.++|+.
T Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~-----g----------~~V~liE~~ 36 (450)
T 1ges_A 4 HYDYIAIGGGSGGIASINRAAMY-----G----------QKCALIEAK 36 (450)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTT-----T----------CCEEEEESS
T ss_pred cCCEEEECCCHHHHHHHHHHHhC-----C----------CeEEEEcCC
Confidence 46899999999999999888652 6 468899986
No 337
>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*
Probab=54.97 E-value=25 Score=37.21 Aligned_cols=31 Identities=23% Similarity=0.302 Sum_probs=25.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
||.|+|+|..|..+|..+... | .+++++|++
T Consensus 2 kI~VIG~G~vG~~~A~~la~~-----G----------~~V~~~d~~ 32 (436)
T 1mv8_A 2 RISIFGLGYVGAVCAGCLSAR-----G----------HEVIGVDVS 32 (436)
T ss_dssp EEEEECCSTTHHHHHHHHHHT-----T----------CEEEEECSC
T ss_pred EEEEECCCHHHHHHHHHHHHC-----C----------CEEEEEECC
Confidence 799999999999999988764 7 358888874
No 338
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=54.88 E-value=9.8 Score=40.13 Aligned_cols=34 Identities=18% Similarity=0.282 Sum_probs=28.0
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
+.+|||+|||.||+..|..+.+. | .++.++|+..
T Consensus 6 ~~dvvIIGgG~aGl~aA~~l~~~-----g----------~~V~liE~~~ 39 (474)
T 1zmd_A 6 DADVTVIGSGPGGYVAAIKAAQL-----G----------FKTVCIEKNE 39 (474)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT-----T----------CCEEEEECSS
T ss_pred CCCEEEECCCHHHHHHHHHHHhC-----C----------CeEEEEeCCC
Confidence 46899999999999999888763 6 3588999864
No 339
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*
Probab=54.86 E-value=87 Score=33.71 Aligned_cols=44 Identities=18% Similarity=0.158 Sum_probs=33.4
Q ss_pred CcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhc
Q 040403 428 PDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFS 478 (623)
Q Consensus 428 ptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~ 478 (623)
-+++|-.||.+-..|+++.+.. .++-++| ||...-|-.+..-..
T Consensus 146 g~iVV~~STv~pgtt~~l~~~l----~~~~v~~---sPe~~~~G~A~~~~l 189 (432)
T 3pid_A 146 NAVMIIKSTIPVGFTRDIKERL----GIDNVIF---SPEFLREGRALYDNL 189 (432)
T ss_dssp TSEEEECSCCCTTHHHHHHHHH----TCCCEEE---CCCCCCTTSHHHHHH
T ss_pred CcEEEEeCCCChHHHHHHHHHH----hhccEee---cCccCCcchhhhccc
Confidence 4577888998878899998887 3455665 999988888865444
No 340
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=54.85 E-value=35 Score=35.61 Aligned_cols=137 Identities=13% Similarity=0.064 Sum_probs=84.5
Q ss_pred HHHhCCceeeecccCCCchHHHHHHHHhccCCccc--cCcchhHHHHHHHHHHHHHHhC------CCCCCCCCceEEEeC
Q 040403 273 IFTRWPNVIVQFEDFQSKWAFKLLQRYRYKYRMFN--DDVQGTAGVAVAGLLGAVRAQG------RSMIDFPKQKIVVAG 344 (623)
Q Consensus 273 v~~~~P~~lIqfEDf~~~nAf~lL~ryr~~~~~FN--DDiQGTaaV~lAgll~A~r~~g------~~~~~l~d~riv~~G 344 (623)
|-.+|.++ |-+-.++ ..+.+.|.+|- .+||.| || .--=.=+||=++.-.+..| ++ +++.+|+++|
T Consensus 96 vls~~~D~-iviR~~~-~~~~~~lA~~~-~vPVINag~~-~~HPtQaLaDl~Ti~e~~g~~~~~~~~---l~gl~va~vG 168 (328)
T 3grf_A 96 VFSRMVDI-CTARLAT-KEMMREMAQHA-SVPCINALDD-FGHPLQMVCDFMTIKEKFTAAGEFSNG---FKGIKFAYCG 168 (328)
T ss_dssp HHTTTCSE-EEEECSS-HHHHHHHHHHC-SSCEEESSCS-SCCHHHHHHHHHHHHHHHHHTTCCTTT---GGGCCEEEES
T ss_pred HHHhhCCE-EEEecCC-hhHHHHHHHhC-CCCEEeCCCC-CCCcHHHHHHHHHHHHHhCCccccccc---cCCcEEEEeC
Confidence 34456554 2234554 34555666663 689998 65 4445567777777667766 36 8999999999
Q ss_pred cchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCCHHHHHh
Q 040403 345 AGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQ 424 (623)
Q Consensus 345 AGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~ 424 (623)
-+. + .+|+-++.++.+- |+ +|.++-.+|+..+-.+++.+..+.+|+.. ..+.......++.|+|+
T Consensus 169 D~~-~-~va~Sl~~~~~~~-G~----------~v~~~~P~~~~~~p~~~~~~~~~~~~~~~--~~g~~v~~~~d~~eav~ 233 (328)
T 3grf_A 169 DSM-N-NVTYDLMRGCALL-GM----------ECHVCCPDHKDFKPIKEVIDECEEIIAKH--GTGGSIKIFHDCKKGCE 233 (328)
T ss_dssp CCS-S-HHHHHHHHHHHHH-TC----------EEEEECCSSGGGSCCHHHHHHHHHHHHHH--TCCCEEEEESSHHHHHT
T ss_pred CCC-c-chHHHHHHHHHHc-CC----------EEEEECChHhhhCCCHHHHHHHHHHHhhc--cCCCeEEEEcCHHHHhc
Confidence 985 3 5888888888775 84 58889888886321111111122233210 00000123568999999
Q ss_pred hcCCcEEEe
Q 040403 425 QVKPDVLLG 433 (623)
Q Consensus 425 ~vkptvLIG 433 (623)
+.||+.-
T Consensus 234 --~aDvvyt 240 (328)
T 3grf_A 234 --GVDVVYT 240 (328)
T ss_dssp --TCSEEEE
T ss_pred --CCCEEEe
Confidence 9999984
No 341
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=54.76 E-value=12 Score=41.83 Aligned_cols=35 Identities=26% Similarity=0.422 Sum_probs=29.0
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
...+|||+|||.||+..|..|.+. | .++.++|+..
T Consensus 390 ~~~~VvIIGgG~AGl~aA~~La~~-----G----------~~V~liE~~~ 424 (690)
T 3k30_A 390 SDARVLVVGAGPSGLEAARALGVR-----G----------YDVVLAEAGR 424 (690)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHH-----T----------CEEEEECSSS
T ss_pred ccceEEEECCCHHHHHHHHHHHHC-----C----------CeEEEEecCC
Confidence 457899999999999999988774 7 3588999863
No 342
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Probab=54.67 E-value=10 Score=39.21 Aligned_cols=35 Identities=34% Similarity=0.446 Sum_probs=28.7
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEcc
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDA 383 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~ 383 (623)
..+..|||+|||.+|+.+|..|.+. | ..++.++|+
T Consensus 21 m~~~dVvIIGgGiaGls~A~~La~~-----G---------~~~V~vlE~ 55 (448)
T 3axb_A 21 MPRFDYVVVGAGVVGLAAAYYLKVW-----S---------GGSVLVVDA 55 (448)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHHH-----H---------CSCEEEEES
T ss_pred CCcCCEEEECcCHHHHHHHHHHHhC-----C---------CCcEEEEcc
Confidence 4567899999999999999988774 5 136888998
No 343
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=54.48 E-value=5.6 Score=45.51 Aligned_cols=35 Identities=31% Similarity=0.457 Sum_probs=31.6
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+..||+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 410 ~~~~vlvvG~GglG~~~~~~L~~~-----Gv---------g~i~l~D~d 444 (805)
T 2nvu_B 410 DTCKVLVIGAGGLGCELLKNLALS-----GF---------RQIHVIDMD 444 (805)
T ss_dssp HTCCEEEECCSSHHHHHHHHHHTT-----TC---------CEEEEEECC
T ss_pred hCCeEEEECCCHHHHHHHHHHHHc-----CC---------CcEEEECCC
Confidence 688999999999999999998875 96 789999987
No 344
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=54.36 E-value=7.5 Score=42.09 Aligned_cols=33 Identities=12% Similarity=0.322 Sum_probs=25.2
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
..||||+|+|.||+-.|+.|.. . + -+|.|+|++
T Consensus 42 KprVVIIGgG~AGl~~A~~L~~----~-~----------~~VtLId~~ 74 (502)
T 4g6h_A 42 KPNVLILGSGWGAISFLKHIDT----K-K----------YNVSIISPR 74 (502)
T ss_dssp SCEEEEECSSHHHHHHHHHSCT----T-T----------CEEEEEESS
T ss_pred CCCEEEECCcHHHHHHHHHhhh----C-C----------CcEEEECCC
Confidence 3589999999999988766532 1 2 369999985
No 345
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=54.16 E-value=12 Score=39.08 Aligned_cols=37 Identities=24% Similarity=0.432 Sum_probs=29.4
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCc
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGL 386 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GL 386 (623)
..+|||+|||.||+..|..|.+. |.+ .+|.++|+..-
T Consensus 4 ~~~vvIIGgG~aGl~aA~~l~~~-----g~~--------~~V~lie~~~~ 40 (431)
T 1q1r_A 4 NDNVVIVGTGLAGVEVAFGLRAS-----GWE--------GNIRLVGDATV 40 (431)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHT-----TCC--------SEEEEECSCCS
T ss_pred CCcEEEEcCHHHHHHHHHHHHcc-----CcC--------CCEEEEECCCC
Confidence 46899999999999999988763 742 37999987643
No 346
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=54.02 E-value=12 Score=36.57 Aligned_cols=103 Identities=16% Similarity=0.157 Sum_probs=55.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccc-----
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQG----- 412 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~----- 412 (623)
.||.|+|+|..|..+|..|... | .+++++|++. +....+.+..-......
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~-----g----------~~V~~~~r~~----------~~~~~~~~~g~~~~~~~~~~~~ 58 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQG-----G----------NDVTLIDQWP----------AHIEAIRKNGLIADFNGEEVVA 58 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----T----------CEEEEECSCH----------HHHHHHHHHCEEEEETTEEEEE
T ss_pred CeEEEECcCHHHHHHHHHHHhC-----C----------CcEEEEECCH----------HHHHHHHhCCEEEEeCCCeeEe
Confidence 4899999999999999888764 6 3588888741 11111111000000000
Q ss_pred cCCCCCHHHHHhhc-CCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCC
Q 040403 413 LWEGASLVEVVQQV-KPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTN 467 (623)
Q Consensus 413 ~~~~~~L~e~V~~v-kptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~ 467 (623)
.....+..|+.+.+ +.|++|= +..+ -..+++++.++....+..+|..++|...
T Consensus 59 ~~~~~~~~~~~~~~~~~d~vi~-~v~~-~~~~~v~~~l~~~l~~~~~iv~~~~g~~ 112 (316)
T 2ew2_A 59 NLPIFSPEEIDHQNEQVDLIIA-LTKA-QQLDAMFKAIQPMITEKTYVLCLLNGLG 112 (316)
T ss_dssp CCCEECGGGCCTTSCCCSEEEE-CSCH-HHHHHHHHHHGGGCCTTCEEEECCSSSC
T ss_pred cceeecchhhcccCCCCCEEEE-Eecc-ccHHHHHHHHHHhcCCCCEEEEecCCCC
Confidence 00001122222211 5787773 3222 2458888888333455678888998663
No 347
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=53.81 E-value=9.3 Score=40.07 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=26.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.+|+|+|||.||+..|..+.+. | .++.++|+.
T Consensus 4 ~dvvIIGgG~aGl~aA~~l~~~-----g----------~~V~lie~~ 35 (455)
T 1ebd_A 4 TETLVVGAGPGGYVAAIRAAQL-----G----------QKVTIVEKG 35 (455)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT-----T----------CCEEEEESS
T ss_pred CCEEEECCCHHHHHHHHHHHhC-----C----------CeEEEEECC
Confidence 4799999999999999887663 6 368899986
No 348
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=53.78 E-value=30 Score=34.04 Aligned_cols=105 Identities=13% Similarity=0.169 Sum_probs=57.6
Q ss_pred CceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhh-h--hcccc
Q 040403 337 KQKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVN-E--ISRQG 412 (623)
Q Consensus 337 d~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~-~--~~~~~ 412 (623)
..+|+|.|| |-.|..+++.|++ + | -+++++|+.. .........+..... . +-...
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~----~-G----------~~V~~~~r~~------~~~~~~~~~~~~~~~~~~~~~~~D 63 (341)
T 3enk_A 5 KGTILVTGGAGYIGSHTAVELLA----H-G----------YDVVIADNLV------NSKREAIARIEKITGKTPAFHETD 63 (341)
T ss_dssp SCEEEEETTTSHHHHHHHHHHHH----T-T----------CEEEEECCCS------SSCTHHHHHHHHHHSCCCEEECCC
T ss_pred CcEEEEecCCcHHHHHHHHHHHH----C-C----------CcEEEEecCC------cchHHHHHHHHhhcCCCceEEEee
Confidence 568999996 6666666666554 3 7 3577777641 112222222211100 0 00000
Q ss_pred cCCCCCHHHHHhhcCCcEEEeccCCCCC----------------CCHHHHHHcccCCCCCCEEEecC
Q 040403 413 LWEGASLVEVVQQVKPDVLLGLSAVGGL----------------FSKEVLEAMRGSTSTRPAIFAMS 463 (623)
Q Consensus 413 ~~~~~~L~e~V~~vkptvLIG~S~~~g~----------------Ft~evv~~M~a~~~erPIIFaLS 463 (623)
.....++.++++..++|++|=+.+.... -|..+++.| .+..-+.|||.=|
T Consensus 64 l~d~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~-~~~~~~~iv~~SS 129 (341)
T 3enk_A 64 VSDERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVM-RERAVKRIVFSSS 129 (341)
T ss_dssp TTCHHHHHHHHHHSCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHH-HHTTCCEEEEEEE
T ss_pred cCCHHHHHHHHhccCCcEEEECccccccCccccChHHHHHHHHHHHHHHHHHH-HhCCCCEEEEEec
Confidence 1122347777877789999987764321 134678888 4555567888654
No 349
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=53.76 E-value=11 Score=39.23 Aligned_cols=36 Identities=19% Similarity=0.482 Sum_probs=27.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
.+|||+|||.||+..|..|...+.. | -+|.++|+.-
T Consensus 5 ~~vvIIGgG~aGl~aA~~L~~~~~~--g----------~~Vtlie~~~ 40 (437)
T 3sx6_A 5 AHVVILGAGTGGMPAAYEMKEALGS--G----------HEVTLISAND 40 (437)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHHGG--G----------SEEEEECSSS
T ss_pred CcEEEECCcHHHHHHHHHHhccCCC--c----------CEEEEEeCCC
Confidence 5899999999999999998774211 3 3677887753
No 350
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=53.73 E-value=9.8 Score=40.71 Aligned_cols=33 Identities=21% Similarity=0.430 Sum_probs=27.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
.+|||+|||.||+..|..+.+. | .++.++|+.-
T Consensus 3 ~dVvIIGgG~aGl~aA~~l~~~-----g----------~~V~liE~~~ 35 (500)
T 1onf_A 3 YDLIVIGGGSGGMAAARRAARH-----N----------AKVALVEKSR 35 (500)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT-----T----------CCEEEEESSS
T ss_pred cCEEEECCCHHHHHHHHHHHHC-----C----------CcEEEEeCCC
Confidence 5799999999999999888763 6 3588999863
No 351
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=53.68 E-value=11 Score=39.98 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=28.3
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
++.+|||+|||.||+..|..+.+. | .++.++|+.-
T Consensus 5 ~~~dvvIIG~G~aG~~aA~~l~~~-----g----------~~V~lie~~~ 39 (464)
T 2eq6_A 5 KTYDLIVIGTGPGGYHAAIRAAQL-----G----------LKVLAVEAGE 39 (464)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHT-----T----------CCEEEEESSC
T ss_pred ccCCEEEECcCHHHHHHHHHHHHC-----C----------CeEEEEeCCC
Confidence 356899999999999999888653 6 3688999863
No 352
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=53.67 E-value=13 Score=39.17 Aligned_cols=38 Identities=18% Similarity=0.227 Sum_probs=27.5
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcc
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLI 387 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi 387 (623)
..+|||+|||.||+..|..|.+. +- -.+|.++|+..-+
T Consensus 3 ~~~VvIIGaG~aGl~aA~~L~~~-----~~--------g~~Vtvie~~~~~ 40 (472)
T 3iwa_A 3 LKHVVVIGAVALGPKAACRFKRL-----DP--------EAHVTMIDQASRI 40 (472)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHH-----CT--------TSEEEEECCC---
T ss_pred CCcEEEECCCHHHHHHHHHHHhh-----Cc--------CCCEEEEECCCcc
Confidence 36899999999999999988764 21 1478889886543
No 353
>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}
Probab=53.66 E-value=24 Score=35.30 Aligned_cols=51 Identities=14% Similarity=0.105 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 316 VAVAGLLGAVRAQGRSMIDFPKQKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 316 V~lAgll~A~r~~g~~~~~l~d~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+.++..+.+++..+.- -.+++++|.|| |..|..+++++... | -+++.+|+.
T Consensus 128 ~~~~ta~~~l~~~~~~---~~g~~vlV~Ga~ggiG~~~~~~a~~~-----G----------~~Vi~~~~~ 179 (333)
T 1wly_A 128 LKGMTAQYLLHQTHKV---KPGDYVLIHAAAGGMGHIMVPWARHL-----G----------ATVIGTVST 179 (333)
T ss_dssp HHHHHHHHHHHTTSCC---CTTCEEEETTTTSTTHHHHHHHHHHT-----T----------CEEEEEESS
T ss_pred hhHHHHHHHHHHhhCC---CCCCEEEEECCccHHHHHHHHHHHHC-----C----------CEEEEEeCC
Confidence 3445556666533333 36789999996 88888777766552 6 258888763
No 354
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=53.64 E-value=20 Score=36.21 Aligned_cols=96 Identities=17% Similarity=0.165 Sum_probs=52.5
Q ss_pred CCceEEEeC-cchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccC
Q 040403 336 PKQKIVVAG-AGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLW 414 (623)
Q Consensus 336 ~d~riv~~G-AGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~ 414 (623)
+-.||+++| .|..|--+++++... .++ +=+..+|+++--..++ ++. .++..... ..
T Consensus 6 ~mikV~V~Ga~G~MG~~i~~~l~~~----~~~---------eLv~~~d~~~~~~~G~-d~g----el~g~~~g-----v~ 62 (272)
T 4f3y_A 6 SSMKIAIAGASGRMGRMLIEAVLAA----PDA---------TLVGALDRTGSPQLGQ-DAG----AFLGKQTG-----VA 62 (272)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHHC----TTE---------EEEEEBCCTTCTTTTS-BTT----TTTTCCCS-----CB
T ss_pred cccEEEEECCCCHHHHHHHHHHHhC----CCC---------EEEEEEEecCcccccc-cHH----HHhCCCCC-----ce
Confidence 347999999 799998888887652 132 2245567753210110 011 01100001 23
Q ss_pred CCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEE
Q 040403 415 EGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIF 460 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIF 460 (623)
...++.++++ +|||+|=+|. |.+ +.+.++.. .+ +..|+|.
T Consensus 63 v~~dl~~ll~--~~DVVIDfT~-p~a-~~~~~~~a-l~-~G~~vVi 102 (272)
T 4f3y_A 63 LTDDIERVCA--EADYLIDFTL-PEG-TLVHLDAA-LR-HDVKLVI 102 (272)
T ss_dssp CBCCHHHHHH--HCSEEEECSC-HHH-HHHHHHHH-HH-HTCEEEE
T ss_pred ecCCHHHHhc--CCCEEEEcCC-HHH-HHHHHHHH-HH-cCCCEEE
Confidence 3567999888 7999998773 332 24455544 33 3455654
No 355
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Probab=53.60 E-value=85 Score=31.54 Aligned_cols=94 Identities=11% Similarity=0.151 Sum_probs=52.3
Q ss_pred HHHHHhCCCCCCCCCceEEEe-CcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHh
Q 040403 323 GAVRAQGRSMIDFPKQKIVVA-GAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPF 401 (623)
Q Consensus 323 ~A~r~~g~~~~~l~d~riv~~-GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~f 401 (623)
++++..+ . ..++++||. |+|..|...++++... |. +++.+|+. +.+..+
T Consensus 155 ~~~~~~~-~---~g~~~vli~gg~g~vG~~a~qla~~~-----Ga----------~Vi~~~~~-----------~~~~~~ 204 (349)
T 3pi7_A 155 AMFDIVK-Q---EGEKAFVMTAGASQLCKLIIGLAKEE-----GF----------RPIVTVRR-----------DEQIAL 204 (349)
T ss_dssp HHHHHHH-H---HCCSEEEESSTTSHHHHHHHHHHHHH-----TC----------EEEEEESC-----------GGGHHH
T ss_pred HHHHHHh-h---CCCCEEEEeCCCcHHHHHHHHHHHHC-----CC----------EEEEEeCC-----------HHHHHH
Confidence 5556555 4 356788877 7787777766655543 72 57877752 334555
Q ss_pred HHHhhhhcccccCCCCCHHHHHhh----cCCcEEEeccCCCCCCCHHHHHHc
Q 040403 402 ARKVNEISRQGLWEGASLVEVVQQ----VKPDVLLGLSAVGGLFSKEVLEAM 449 (623)
Q Consensus 402 A~~~~~~~~~~~~~~~~L~e~V~~----vkptvLIG~S~~~g~Ft~evv~~M 449 (623)
++.-.- ..-......++.+.++. -+.|++|=+++.. ..++.++.|
T Consensus 205 ~~~~Ga-~~~~~~~~~~~~~~v~~~~~~~g~D~vid~~g~~--~~~~~~~~l 253 (349)
T 3pi7_A 205 LKDIGA-AHVLNEKAPDFEATLREVMKAEQPRIFLDAVTGP--LASAIFNAM 253 (349)
T ss_dssp HHHHTC-SEEEETTSTTHHHHHHHHHHHHCCCEEEESSCHH--HHHHHHHHS
T ss_pred HHHcCC-CEEEECCcHHHHHHHHHHhcCCCCcEEEECCCCh--hHHHHHhhh
Confidence 542110 00001123456666654 3799999877532 225555555
No 356
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=53.52 E-value=16 Score=38.23 Aligned_cols=37 Identities=22% Similarity=0.376 Sum_probs=28.5
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCc
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGL 386 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GL 386 (623)
..+|||+|||.||+..|..|.+. |- -.+|.++|+..-
T Consensus 3 ~~~VvIIGgG~aGl~aA~~L~~~-----~~--------~~~V~vie~~~~ 39 (449)
T 3kd9_A 3 LKKVVIIGGGAAGMSAASRVKRL-----KP--------EWDVKVFEATEW 39 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH-----CT--------TSEEEEECSSSC
T ss_pred cCcEEEECCcHHHHHHHHHHHHh-----Cc--------CCCEEEEECCCc
Confidence 46899999999999999888764 31 146888888653
No 357
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Probab=53.37 E-value=13 Score=39.85 Aligned_cols=38 Identities=13% Similarity=0.267 Sum_probs=29.8
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCc
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGL 386 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GL 386 (623)
...+|||+|||.||+..|..|... +. ..+|.++|+..-
T Consensus 10 ~~~~vvIIGgG~AGl~aA~~L~~~-----~~--------g~~V~lie~~~~ 47 (493)
T 1m6i_A 10 SHVPFLLIGGGTAAFAAARSIRAR-----DP--------GARVLIVSEDPE 47 (493)
T ss_dssp SEEEEEEESCSHHHHHHHHHHHHH-----ST--------TCEEEEEESSSS
T ss_pred CcCCEEEECChHHHHHHHHHHHhc-----CC--------CCeEEEEeCCCC
Confidence 457899999999999999888664 32 257999998743
No 358
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=53.21 E-value=12 Score=39.65 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=27.3
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+..|+|+|||.||+..|..+.+. | .++.++|+.
T Consensus 26 ~~DVvVIGgG~aGl~aA~~la~~-----G----------~~V~liEk~ 58 (484)
T 3o0h_A 26 DFDLFVIGSGSGGVRAARLAGAL-----G----------KRVAIAEEY 58 (484)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHT-----T----------CCEEEEESS
T ss_pred CCCEEEECcCHHHHHHHHHHHhC-----c----------CEEEEEeCC
Confidence 46899999999999999888764 7 358889884
No 359
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=53.15 E-value=17 Score=37.80 Aligned_cols=112 Identities=17% Similarity=0.149 Sum_probs=51.9
Q ss_pred HHHHHhCCCCCCCCC-ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHh
Q 040403 323 GAVRAQGRSMIDFPK-QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPF 401 (623)
Q Consensus 323 ~A~r~~g~~~~~l~d-~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~f 401 (623)
+.-.+.... .++ .||-|+|+|..|-.-++.+...-.....+.+ .+ +=+-++|++ .+..+.+
T Consensus 14 ~~~~~~~~~---Ms~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~----~~-elvav~d~~----------~~~a~~~ 75 (412)
T 4gqa_A 14 GTENLYFQS---MSARLNIGLIGSGFMGQAHADAYRRAAMFYPDLPK----RP-HLYALADQD----------QAMAERH 75 (412)
T ss_dssp --------------CEEEEEEECCSHHHHHHHHHHHHHHHHCTTSSS----EE-EEEEEECSS----------HHHHHHH
T ss_pred ccccCcccc---ccccceEEEEcCcHHHHHHHHHHHhccccccccCC----Ce-EEEEEEcCC----------HHHHHHH
Confidence 333444444 444 6999999998876555544432111001110 11 123356652 1223445
Q ss_pred HHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcc---cCCCCCCE
Q 040403 402 ARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMR---GSTSTRPA 458 (623)
Q Consensus 402 A~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~---a~~~erPI 458 (623)
|+. +.. ..-..++.|.++.-++|+++ +++.+..=-+-++++|+ .-.+|+|+
T Consensus 76 a~~---~~~--~~~y~d~~~ll~~~~vD~V~-I~tp~~~H~~~~~~al~aGkhVl~EKP~ 129 (412)
T 4gqa_A 76 AAK---LGA--EKAYGDWRELVNDPQVDVVD-ITSPNHLHYTMAMAAIAAGKHVYCEKPL 129 (412)
T ss_dssp HHH---HTC--SEEESSHHHHHHCTTCCEEE-ECSCGGGHHHHHHHHHHTTCEEEEESCS
T ss_pred HHH---cCC--CeEECCHHHHhcCCCCCEEE-ECCCcHHHHHHHHHHHHcCCCeEeecCC
Confidence 532 110 12357899999988889877 55444333344455552 12356664
No 360
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*
Probab=53.10 E-value=13 Score=35.96 Aligned_cols=100 Identities=15% Similarity=0.071 Sum_probs=56.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCCC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGAS 418 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~~ 418 (623)
||.|+|+|..|..+|..|... | .+++++|+.- .+ +...+...... ..+.. .... +
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~-----g----------~~V~~~~r~~----~~--~~~l~~~~~~~-~~~~~--~~~~-~ 56 (291)
T 1ks9_A 2 KITVLGCGALGQLWLTALCKQ-----G----------HEVQGWLRVP----QP--YCSVNLVETDG-SIFNE--SLTA-N 56 (291)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-----T----------CEEEEECSSC----CS--EEEEEEECTTS-CEEEE--EEEE-S
T ss_pred eEEEECcCHHHHHHHHHHHhC-----C----------CCEEEEEcCc----cc--eeeEEEEcCCC-ceeee--eeee-c
Confidence 799999999999999988764 6 3588888742 11 11100000000 00000 0011 2
Q ss_pred HHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCC
Q 040403 419 LVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTN 467 (623)
Q Consensus 419 L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~ 467 (623)
..++++ ++|++|=+- .+. ..+++++.++....+..+|..++|...
T Consensus 57 ~~~~~~--~~d~vi~~v-~~~-~~~~v~~~l~~~l~~~~~vv~~~~g~~ 101 (291)
T 1ks9_A 57 DPDFLA--TSDLLLVTL-KAW-QVSDAVKSLASTLPVTTPILLIHNGMG 101 (291)
T ss_dssp CHHHHH--TCSEEEECS-CGG-GHHHHHHHHHTTSCTTSCEEEECSSSC
T ss_pred CccccC--CCCEEEEEe-cHH-hHHHHHHHHHhhCCCCCEEEEecCCCC
Confidence 346676 688887333 233 358899888333455667778899763
No 361
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=52.92 E-value=13 Score=41.31 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=28.6
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.++.+|||+|||.||+..|-.|... |+ ++.++|+.
T Consensus 21 M~~~DVvIVGgG~AGl~aA~~Lar~-----G~----------~V~LiEr~ 55 (591)
T 3i3l_A 21 MTRSKVAIIGGGPAGSVAGLTLHKL-----GH----------DVTIYERS 55 (591)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHT-----TC----------EEEEECSS
T ss_pred CCCCCEEEECcCHHHHHHHHHHHcC-----CC----------CEEEEcCC
Confidence 4567999999999999999887663 74 57788887
No 362
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*
Probab=52.91 E-value=12 Score=40.12 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=28.5
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCc
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGL 386 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GL 386 (623)
...+|+|+|||.||+..|..+... |+ ++.++|+..-
T Consensus 91 ~~~dVvIVGgG~aGl~aA~~La~~-----G~----------~V~liEk~~~ 126 (497)
T 2bry_A 91 TNTKCLVVGAGPCGLRAAVELALL-----GA----------RVVLVEKRIK 126 (497)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-----TC----------EEEEEESCSS
T ss_pred CCCCEEEECccHHHHHHHHHHHHC-----CC----------eEEEEEeccc
Confidence 467999999999999999888763 73 5778887643
No 363
>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*
Probab=52.84 E-value=21 Score=36.15 Aligned_cols=54 Identities=20% Similarity=0.198 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHHH-HHhCCCCCCCCC--ceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEcc
Q 040403 312 GTAGVAVAGLLGAV-RAQGRSMIDFPK--QKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDA 383 (623)
Q Consensus 312 GTaaV~lAgll~A~-r~~g~~~~~l~d--~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~ 383 (623)
++-.+.++..+.++ +..+.+ .+ ++++|.|| |..|..+++++... |. ++++.+|+
T Consensus 137 a~l~~~~~ta~~al~~~~~~~----~g~~~~vlI~GasggiG~~~~~~a~~~-----Ga---------~~Vi~~~~ 194 (357)
T 2zb4_A 137 GAIGMPGLTSLIGIQEKGHIT----AGSNKTMVVSGAAGACGSVAGQIGHFL-----GC---------SRVVGICG 194 (357)
T ss_dssp TTTSHHHHHHHHHHHHHSCCC----TTSCCEEEESSTTBHHHHHHHHHHHHT-----TC---------SEEEEEES
T ss_pred HhcccHHHHHHHHHHHhcCCC----CCCccEEEEECCCcHHHHHHHHHHHHC-----CC---------CeEEEEeC
Confidence 33334455556667 444444 56 89999998 87777776665542 73 46888887
No 364
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Probab=52.82 E-value=36 Score=34.68 Aligned_cols=33 Identities=24% Similarity=0.491 Sum_probs=24.4
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+++|+|.|||..|..+++++... |. +++.+|+.
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~-----Ga----------~Vi~~~~~ 213 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTY-----GL----------EVWMANRR 213 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHH-----TC----------EEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-----CC----------EEEEEeCC
Confidence 89999999987777666655543 72 68888873
No 365
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=52.80 E-value=8.4 Score=38.39 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=18.6
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 040403 338 QKIVVAGAGSAGLGVLNAARK 358 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~ 358 (623)
.+|+|+|||.+|+..|..|.+
T Consensus 2 ~dV~IIGaG~aGl~~A~~L~~ 22 (342)
T 3qj4_A 2 AQVLIVGAGMTGSLCAALLRR 22 (342)
T ss_dssp EEEEEECCSHHHHHHHHHHHS
T ss_pred CcEEEECCcHHHHHHHHHHHh
Confidence 379999999999999988865
No 366
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Probab=52.79 E-value=11 Score=40.30 Aligned_cols=34 Identities=24% Similarity=0.484 Sum_probs=27.7
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
+..|+|+|||.+|+++|..+... |+ ++.++|+..
T Consensus 3 ~~DVvIIGgGi~G~~~A~~La~~-----G~----------~V~llE~~~ 36 (501)
T 2qcu_A 3 TKDLIVIGGGINGAGIAADAAGR-----GL----------SVLMLEAQD 36 (501)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHT-----TC----------CEEEECSSS
T ss_pred cCCEEEECcCHHHHHHHHHHHhC-----CC----------CEEEEECCC
Confidence 45799999999999999988764 74 478888764
No 367
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A
Probab=52.62 E-value=13 Score=40.45 Aligned_cols=38 Identities=21% Similarity=0.325 Sum_probs=28.7
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCc
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGL 386 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GL 386 (623)
..+|||+|||.||.-.|-.|..... . | -+|.++|+...
T Consensus 25 ~~dVvIVGgG~aGl~aA~~La~~~~-~-G----------~~V~liE~~~~ 62 (550)
T 2e4g_A 25 IDKILIVGGGTAGWMAASYLGKALQ-G-T----------ADITLLQAPDI 62 (550)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTT-T-S----------SEEEEEECCCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhhcC-C-C----------CcEEEEeCCCC
Confidence 4589999999999999988876310 1 5 36889998643
No 368
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=52.53 E-value=12 Score=39.46 Aligned_cols=34 Identities=35% Similarity=0.414 Sum_probs=27.4
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
+..|+|+|||.||+..|..+.+. | .++.++|+++
T Consensus 4 ~~DVvVIGgG~aGl~aA~~l~~~-----G----------~~V~liEk~~ 37 (466)
T 3l8k_A 4 KYDVVVIGAGGAGYHGAFRLAKA-----K----------YNVLMADPKG 37 (466)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT-----T----------CCEEEECTTS
T ss_pred cceEEEECCCHHHHHHHHHHHhC-----C----------CeEEEEECCC
Confidence 35799999999999999888663 7 3588999654
No 369
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=52.52 E-value=7.6 Score=40.35 Aligned_cols=36 Identities=25% Similarity=0.389 Sum_probs=27.5
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCc
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGL 386 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GL 386 (623)
+.-||||+|||.||+..|..|.. .| .+|.++|+..-
T Consensus 8 ~~~~~vIvGgG~AGl~aA~~L~~-----~~----------~~itlie~~~~ 43 (385)
T 3klj_A 8 KSTKILILGAGPAGFSAAKAALG-----KC----------DDITMINSEKY 43 (385)
T ss_dssp CBCSEEEECCSHHHHHHHHHHTT-----TC----------SCEEEECSSSS
T ss_pred CCCCEEEEcCcHHHHHHHHHHhC-----CC----------CEEEEEECCCC
Confidence 34599999999999999998811 13 46899988643
No 370
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=52.46 E-value=9.2 Score=39.83 Aligned_cols=38 Identities=13% Similarity=0.306 Sum_probs=28.3
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhcc-CeEEEEccCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSAR-SQFWVVDAKG 385 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~-~~i~lvD~~G 385 (623)
..+|||+|||.||+..|..|.+. |. +.. -++.++|+..
T Consensus 30 ~~dVvIIGaG~aGl~aA~~L~~~-----g~------~~~~~~v~liE~~~ 68 (463)
T 3s5w_A 30 VHDLIGVGFGPSNIALAIALQER-----AQ------AQGALEVLFLDKQG 68 (463)
T ss_dssp EESEEEECCSHHHHHHHHHHHHH-----HH------HHCCCCEEEEESCS
T ss_pred cCCEEEECCCHHHHHHHHHHHhc-----cc------ccCcccEEEEecCC
Confidence 34799999999999999988875 51 100 3688888764
No 371
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=52.42 E-value=13 Score=39.15 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=27.4
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+..|+|+|||.||+..|..+.+. | .++.++|+.
T Consensus 3 ~~DVvVIGgG~aGl~aA~~la~~-----G----------~~V~liEk~ 35 (476)
T 3lad_A 3 KFDVIVIGAGPGGYVAAIKSAQL-----G----------LKTALIEKY 35 (476)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHH-----T----------CCEEEEECC
T ss_pred cCCEEEECcCHHHHHHHHHHHhC-----C----------CEEEEEeCC
Confidence 45799999999999999888764 7 358889886
No 372
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*
Probab=52.40 E-value=1.7 Score=45.23 Aligned_cols=121 Identities=13% Similarity=0.154 Sum_probs=69.8
Q ss_pred ceEEEeC-cchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC---cccCCCCCCChhhHHhHHHhhhhccccc
Q 040403 338 QKIVVAG-AGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG---LITEDRENIDPDAKPFARKVNEISRQGL 413 (623)
Q Consensus 338 ~riv~~G-AGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G---Li~~~r~~l~~~~~~fA~~~~~~~~~~~ 413 (623)
.||+|.| ||..|.-+|.+|+.. |+-. ++=.-.+.|+|... .+....-||.+...+|. .+ .
T Consensus 4 ~kV~V~GaaG~VG~~la~~L~~~-----~~~~---e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~---~~-----~ 67 (333)
T 5mdh_A 4 IRVLVTGAAGQIAYSLLYSIGNG-----SVFG---KDQPIILVLLDITPMMGVLDGVLMELQDCALPLL---KD-----V 67 (333)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTT-----TTTC---TTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTE---EE-----E
T ss_pred eEEEEECCCCHHHHHHHHHHHhC-----CCcc---ccCCCEEEEEeCCCccccchhhHhhhHhhhhccc---CC-----E
Confidence 5899999 799999888877652 5411 00011389999852 11000001111101111 01 1
Q ss_pred CCCCCHHHHHhhcCCcEEEeccCCC---CC-----------CCHHHHHHcccCCCCCCE-EEecCCCCCCCCCCHHHHhc
Q 040403 414 WEGASLVEVVQQVKPDVLLGLSAVG---GL-----------FSKEVLEAMRGSTSTRPA-IFAMSNPTNNAECTPEEAFS 478 (623)
Q Consensus 414 ~~~~~L~e~V~~vkptvLIG~S~~~---g~-----------Ft~evv~~M~a~~~erPI-IFaLSNPt~~~E~tpeda~~ 478 (623)
....++.++++ +.|++|=+.+.+ |- ..+++++.+ .+++.+-+ |+-.|||. .....-+++
T Consensus 68 ~~~~~~~~~~~--daDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i-~~~~~~~~~vivvsNPv---d~~t~~~~~ 141 (333)
T 5mdh_A 68 IATDKEEIAFK--DLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAAL-DKYAKKSVKVIVVGNPA---NTNCLTASK 141 (333)
T ss_dssp EEESCHHHHTT--TCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHH-HHHSCTTCEEEECSSSH---HHHHHHHHH
T ss_pred EEcCCcHHHhC--CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHhCCCCeEEEEcCCch---HHHHHHHHH
Confidence 12356888888 899988555433 21 246788888 77787764 89999997 455555555
Q ss_pred cc
Q 040403 479 IV 480 (623)
Q Consensus 479 wT 480 (623)
.+
T Consensus 142 ~~ 143 (333)
T 5mdh_A 142 SA 143 (333)
T ss_dssp TC
T ss_pred Hc
Confidence 43
No 373
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=52.39 E-value=16 Score=39.76 Aligned_cols=38 Identities=24% Similarity=0.351 Sum_probs=29.9
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCc
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGL 386 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GL 386 (623)
...+|||+|||.||+..|..|.+. +- .-+|.++|+..-
T Consensus 35 ~~~~VvIIGgG~AGl~aA~~L~~~-----~~--------g~~V~vie~~~~ 72 (588)
T 3ics_A 35 GSRKIVVVGGVAGGASVAARLRRL-----SE--------EDEIIMVERGEY 72 (588)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHH-----CS--------SSEEEEECSSSC
T ss_pred cCCCEEEECCcHHHHHHHHHHHhh-----Cc--------CCCEEEEECCCC
Confidence 457999999999999999888764 31 147899998754
No 374
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*
Probab=52.24 E-value=10 Score=40.34 Aligned_cols=37 Identities=16% Similarity=0.295 Sum_probs=26.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCc
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGL 386 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GL 386 (623)
.+|||+|||.||+..|-.|..... . |+ ++.++|+.-.
T Consensus 3 ~dVvIVGgG~aGl~~A~~La~~~~-~-G~----------~V~lvE~~~~ 39 (511)
T 2weu_A 3 RSVVIVGGGTAGWMTASYLKAAFD-D-RI----------DVTLVESGNV 39 (511)
T ss_dssp CEEEEECCHHHHHHHHHHHHHHHG-G-GS----------EEEEEEC---
T ss_pred ceEEEECCCHHHHHHHHHHHhhcC-C-CC----------EEEEEecCCC
Confidence 479999999999999998877321 2 63 5788887643
No 375
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Probab=52.18 E-value=38 Score=34.58 Aligned_cols=74 Identities=20% Similarity=0.312 Sum_probs=43.1
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhh-h-hccccc
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVN-E-ISRQGL 413 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~-~-~~~~~~ 413 (623)
.+++|+|+|||..|...+++... .|. ++++.+|+. +.+..+++.-. + .-+ .
T Consensus 195 ~g~~VlV~GaG~vG~~aiqlak~-----~Ga---------~~Vi~~~~~-----------~~~~~~a~~lGa~~vi~--~ 247 (376)
T 1e3i_A 195 PGSTCAVFGLGCVGLSAIIGCKI-----AGA---------SRIIAIDIN-----------GEKFPKAKALGATDCLN--P 247 (376)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH-----TTC---------SEEEEECSC-----------GGGHHHHHHTTCSEEEC--G
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-----cCC---------CeEEEEcCC-----------HHHHHHHHHhCCcEEEc--c
Confidence 57899999999777666554443 273 468888752 34556664210 0 000 0
Q ss_pred CC-CCCHHHHHhhc---CCcEEEeccC
Q 040403 414 WE-GASLVEVVQQV---KPDVLLGLSA 436 (623)
Q Consensus 414 ~~-~~~L~e~V~~v---kptvLIG~S~ 436 (623)
.. ..++.+.++.. ++|++|=+++
T Consensus 248 ~~~~~~~~~~v~~~~~~g~Dvvid~~G 274 (376)
T 1e3i_A 248 RELDKPVQDVITELTAGGVDYSLDCAG 274 (376)
T ss_dssp GGCSSCHHHHHHHHHTSCBSEEEESSC
T ss_pred ccccchHHHHHHHHhCCCccEEEECCC
Confidence 11 13566666543 6888887775
No 376
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Probab=52.17 E-value=11 Score=40.81 Aligned_cols=35 Identities=31% Similarity=0.539 Sum_probs=28.3
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
.+.+|||+|||.||+..|..|.+. |+ ++.++|+..
T Consensus 15 ~~~dVvIIGaG~aGl~aA~~L~~~-----G~----------~v~iiE~~~ 49 (542)
T 1w4x_A 15 EEVDVLVVGAGFSGLYALYRLREL-----GR----------SVHVIETAG 49 (542)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHT-----TC----------CEEEECSSS
T ss_pred CCCCEEEECccHHHHHHHHHHHhC-----CC----------CEEEEeCCC
Confidence 457899999999999999988764 74 477888754
No 377
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=52.16 E-value=12 Score=39.60 Aligned_cols=33 Identities=18% Similarity=0.337 Sum_probs=26.9
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+.+|||+|||.||+..|..+.+. | .++.++|+.
T Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~-----g----------~~V~lie~~ 37 (458)
T 1lvl_A 5 QTTLLIIGGGPGGYVAAIRAGQL-----G----------IPTVLVEGQ 37 (458)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHH-----T----------CCEEEECSS
T ss_pred cCCEEEECCCHHHHHHHHHHHHC-----C----------CEEEEEccC
Confidence 45799999999999999877664 6 368899883
No 378
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=52.14 E-value=10 Score=36.82 Aligned_cols=32 Identities=13% Similarity=0.147 Sum_probs=24.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.-|+|+|||.||+-.|..+.+. |+ ++.++|+.
T Consensus 5 yDvvIIG~GpAGl~AA~~la~~-----g~----------~v~liE~~ 36 (314)
T 4a5l_A 5 HDVVIIGSGPAAHTAAIYLGRS-----SL----------KPVMYEGF 36 (314)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT-----TC----------CCEEECCS
T ss_pred CcEEEECCCHHHHHHHHHHHHC-----CC----------CEEEEecC
Confidence 3599999999999888766553 74 46677764
No 379
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}
Probab=52.06 E-value=12 Score=39.26 Aligned_cols=32 Identities=28% Similarity=0.352 Sum_probs=25.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.+|+|+|||.||+-.|-.|... |+ ++.++|+.
T Consensus 23 ~~ViIVGaGpaGl~~A~~La~~-----G~----------~V~viE~~ 54 (430)
T 3ihm_A 23 KRIGIVGAGTAGLHLGLFLRQH-----DV----------DVTVYTDR 54 (430)
T ss_dssp CEEEEECCHHHHHHHHHHHHHT-----TC----------EEEEEESC
T ss_pred CCEEEECCcHHHHHHHHHHHHC-----CC----------eEEEEcCC
Confidence 5899999999999999888774 84 46677764
No 380
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*
Probab=52.03 E-value=11 Score=40.44 Aligned_cols=37 Identities=16% Similarity=0.337 Sum_probs=27.5
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
..+|||+|||.||+..|-.|...+. . | -++.++|+.-
T Consensus 5 ~~dVvIVGgG~aGl~aA~~La~~~~-~-G----------~~V~liE~~~ 41 (538)
T 2aqj_A 5 IKNIVIVGGGTAGWMAASYLVRALQ-Q-Q----------ANITLIESAA 41 (538)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCC-S-S----------CEEEEEECSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhcC-C-C----------CEEEEECCCC
Confidence 4689999999999999988876210 1 5 3578888753
No 381
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=51.75 E-value=11 Score=38.51 Aligned_cols=35 Identities=23% Similarity=0.449 Sum_probs=26.8
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
..+|||+|||.||+..|..+.+. |.+ -+|.++|++
T Consensus 4 ~~dvvIIG~G~aGl~aA~~l~~~-----g~~--------~~V~lie~~ 38 (384)
T 2v3a_A 4 RAPLVIIGTGLAGYNLAREWRKL-----DGE--------TPLLMITAD 38 (384)
T ss_dssp CCCEEEECCSHHHHHHHHHHHTT-----CSS--------SCEEEECSS
T ss_pred CCcEEEECChHHHHHHHHHHHhh-----CCC--------CCEEEEECC
Confidence 36799999999999999888653 642 357778764
No 382
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=51.75 E-value=13 Score=39.19 Aligned_cols=34 Identities=26% Similarity=0.411 Sum_probs=27.7
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
+.+|+|+|||.||+..|..+.+. | .++.++|+..
T Consensus 5 ~~dVvIIGgG~aGl~aA~~l~~~-----G----------~~V~liE~~~ 38 (478)
T 1v59_A 5 SHDVVIIGGGPAGYVAAIKAAQL-----G----------FNTACVEKRG 38 (478)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT-----T----------CCEEEEESSS
T ss_pred cCCEEEECCCHHHHHHHHHHHHC-----C----------CeEEEEecCC
Confidence 35799999999999999888763 7 3588999853
No 383
>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}
Probab=51.54 E-value=14 Score=40.60 Aligned_cols=37 Identities=22% Similarity=0.361 Sum_probs=29.1
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+.||||+|||+.|-++|.+|++- .++.. .+|.+.|+.
T Consensus 13 ~~rVlIIGaGgVG~~va~lla~~----~dv~~-------~~I~vaD~~ 49 (480)
T 2ph5_A 13 KNRFVILGFGCVGQALMPLIFEK----FDIKP-------SQVTIIAAE 49 (480)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHH----BCCCG-------GGEEEEESS
T ss_pred CCCEEEECcCHHHHHHHHHHHhC----CCCce-------eEEEEeccc
Confidence 46899999999999999999874 24432 468888874
No 384
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*
Probab=51.43 E-value=10 Score=41.38 Aligned_cols=34 Identities=26% Similarity=0.295 Sum_probs=27.7
Q ss_pred CceEEEeCcchHHHHHHHHHH-HHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAAR-KTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~-~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
+.+|||+|||.||+..|..|. + .|+ ++.++|+..
T Consensus 8 ~~dVvIIGaG~aGl~aA~~L~~~-----~G~----------~v~viE~~~ 42 (540)
T 3gwf_A 8 TVDAVVIGAGFGGIYAVHKLHHE-----LGL----------TTVGFDKAD 42 (540)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT-----TCC----------CEEEEESSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHc-----CCC----------CEEEEECCC
Confidence 468999999999999998887 4 273 588888864
No 385
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=51.32 E-value=12 Score=39.26 Aligned_cols=33 Identities=30% Similarity=0.366 Sum_probs=26.8
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+.+|+|+|||.||+..|..+.+. |. ++.++|+.
T Consensus 3 ~~dvvIIGaG~aGl~aA~~l~~~-----G~----------~V~liE~~ 35 (464)
T 2a8x_A 3 HYDVVVLGAGPGGYVAAIRAAQL-----GL----------STAIVEPK 35 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT-----TC----------CEEEECSS
T ss_pred cCCEEEECCCHHHHHHHHHHHhC-----CC----------eEEEEeCC
Confidence 35799999999999999877663 73 58889886
No 386
>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A
Probab=51.30 E-value=30 Score=35.13 Aligned_cols=85 Identities=14% Similarity=0.133 Sum_probs=47.7
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhh
Q 040403 319 AGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDA 398 (623)
Q Consensus 319 Agll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~ 398 (623)
+..+.+++..+.+ .+++|+|+|||..|...+++.... |. +++.+|+. +.+
T Consensus 166 ~ta~~~l~~~~~~----~g~~VlV~GaG~vG~~~~qlak~~-----Ga----------~Vi~~~~~-----------~~~ 215 (360)
T 1piw_A 166 LTVYSPLVRNGCG----PGKKVGIVGLGGIGSMGTLISKAM-----GA----------ETYVISRS-----------SRK 215 (360)
T ss_dssp HHHHHHHHHTTCS----TTCEEEEECCSHHHHHHHHHHHHH-----TC----------EEEEEESS-----------STT
T ss_pred HHHHHHHHHcCCC----CCCEEEEECCCHHHHHHHHHHHHC-----CC----------EEEEEcCC-----------HHH
Confidence 3345566554444 578999999988887666655443 72 48888762 223
Q ss_pred HHhHHHhh-h-hcccccCCCC-CHHHHHhhcCCcEEEeccCC
Q 040403 399 KPFARKVN-E-ISRQGLWEGA-SLVEVVQQVKPDVLLGLSAV 437 (623)
Q Consensus 399 ~~fA~~~~-~-~~~~~~~~~~-~L~e~V~~vkptvLIG~S~~ 437 (623)
..+++.-. + .- ..... ++.+.++ -+.|++|=+++.
T Consensus 216 ~~~~~~lGa~~v~---~~~~~~~~~~~~~-~~~D~vid~~g~ 253 (360)
T 1piw_A 216 REDAMKMGADHYI---ATLEEGDWGEKYF-DTFDLIVVCASS 253 (360)
T ss_dssp HHHHHHHTCSEEE---EGGGTSCHHHHSC-SCEEEEEECCSC
T ss_pred HHHHHHcCCCEEE---cCcCchHHHHHhh-cCCCEEEECCCC
Confidence 45554210 0 00 00112 4555554 267888877654
No 387
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=51.11 E-value=17 Score=35.45 Aligned_cols=94 Identities=17% Similarity=0.287 Sum_probs=55.0
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCC
Q 040403 338 QKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEG 416 (623)
Q Consensus 338 ~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~ 416 (623)
.+|+|.|| |-.|..+++.|++. | -+++.+++. .+...+. ...+.. -| .. .
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~-----g----------~~V~~~~r~----~~~~~~~--~~~~~~--~D-----l~-~ 53 (311)
T 3m2p_A 3 LKIAVTGGTGFLGQYVVESIKND-----G----------NTPIILTRS----IGNKAIN--DYEYRV--SD-----YT-L 53 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-----T----------CEEEEEESC----CC-------CCEEEE--CC-----CC-H
T ss_pred CEEEEECCCcHHHHHHHHHHHhC-----C----------CEEEEEeCC----CCcccCC--ceEEEE--cc-----cc-H
Confidence 58999996 88888887777663 6 358888875 1111111 000000 01 12 3
Q ss_pred CCHHHHHhhcCCcEEEeccCCCCC------------CCHHHHHHcccCCCCCCEEEecC
Q 040403 417 ASLVEVVQQVKPDVLLGLSAVGGL------------FSKEVLEAMRGSTSTRPAIFAMS 463 (623)
Q Consensus 417 ~~L~e~V~~vkptvLIG~S~~~g~------------Ft~evv~~M~a~~~erPIIFaLS 463 (623)
.++.++++ ++|++|=+.+..+. -|..+++++ .+..-+-+||.=|
T Consensus 54 ~~~~~~~~--~~d~Vih~a~~~~~~~~~~~~~~n~~~~~~ll~a~-~~~~~~r~v~~SS 109 (311)
T 3m2p_A 54 EDLINQLN--DVDAVVHLAATRGSQGKISEFHDNEILTQNLYDAC-YENNISNIVYAST 109 (311)
T ss_dssp HHHHHHTT--TCSEEEECCCCCCSSSCGGGTHHHHHHHHHHHHHH-HHTTCCEEEEEEE
T ss_pred HHHHHhhc--CCCEEEEccccCCCCChHHHHHHHHHHHHHHHHHH-HHcCCCEEEEEcc
Confidence 34677777 89999987765432 146788888 4444455887544
No 388
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=50.94 E-value=17 Score=38.32 Aligned_cols=35 Identities=29% Similarity=0.508 Sum_probs=28.2
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
-...+|+|+|||.+|+..|..|.++ |. ++.++++.
T Consensus 42 ~~~~~V~IIGAGiaGL~aA~~L~~~-----G~----------~V~VlE~~ 76 (376)
T 2e1m_A 42 GPPKRILIVGAGIAGLVAGDLLTRA-----GH----------DVTILEAN 76 (376)
T ss_dssp CSCCEEEEECCBHHHHHHHHHHHHT-----SC----------EEEEECSC
T ss_pred CCCceEEEECCCHHHHHHHHHHHHC-----CC----------cEEEEecc
Confidence 3567999999999999999988774 73 56777765
No 389
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=50.90 E-value=14 Score=39.68 Aligned_cols=26 Identities=8% Similarity=0.182 Sum_probs=23.7
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHH
Q 040403 334 DFPKQKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 334 ~l~d~riv~~GAGsAg~GIA~ll~~~ 359 (623)
+|++++|||+|+|..|..-+++|+.+
T Consensus 9 ~l~~~~vlVvGgG~va~~k~~~L~~~ 34 (457)
T 1pjq_A 9 QLRDRDCLIVGGGDVAERKARLLLEA 34 (457)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHT
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhC
Confidence 38899999999999999999999875
No 390
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=50.74 E-value=17 Score=38.61 Aligned_cols=65 Identities=11% Similarity=0.183 Sum_probs=28.4
Q ss_pred CcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCc
Q 040403 309 DVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGL 386 (623)
Q Consensus 309 DiQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GL 386 (623)
..||-|.++.--.+.--.....+.......+|||+|||.||+..|..+.+. +- -.++.++|+...
T Consensus 8 ~~~~~~~~~~np~~g~~~~~~~~~~~~~~~dvvIIG~G~aGl~aA~~l~~~-----~~--------g~~V~lie~~~~ 72 (480)
T 3cgb_A 8 HHHGMASMTGGQQMGRTLYDDDDKDRWGSMNYVIIGGDAAGMSAAMQIVRN-----DE--------NANVVTLEKGEI 72 (480)
T ss_dssp -----------------------------CEEEEECCSHHHHHHHHHHHHH-----CT--------TCEEEEECSSSC
T ss_pred cccccccccchhhhcccccCCCCcCccccceEEEECCCHHHHHHHHHHHhh-----Cc--------CCcEEEEECCCC
Confidence 446666666554443222111110012235899999999999999988763 21 147899998654
No 391
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=50.63 E-value=12 Score=39.78 Aligned_cols=37 Identities=27% Similarity=0.368 Sum_probs=29.0
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
..+|||+|||.||+..|..+.+. |.. ..++.++|+..
T Consensus 35 ~~dvvIIGaG~aGl~aA~~l~~~-----g~~-------~~~V~lie~~~ 71 (490)
T 2bc0_A 35 GSKIVVVGANHAGTACIKTMLTN-----YGD-------ANEIVVFDQNS 71 (490)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH-----HGG-------GSEEEEECSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhc-----CCC-------CCeEEEEECCC
Confidence 47899999999999999988764 311 25788999864
No 392
>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*
Probab=50.41 E-value=19 Score=34.65 Aligned_cols=86 Identities=15% Similarity=0.249 Sum_probs=52.8
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCC
Q 040403 339 KIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGA 417 (623)
Q Consensus 339 riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~ 417 (623)
||+|.|| |-.|..+++.|+ . | -+++.+|+..-.. ..|+. ...
T Consensus 2 ~ilVtGatG~iG~~l~~~L~-~-----g----------~~V~~~~r~~~~~--~~D~~-------------------d~~ 44 (299)
T 1n2s_A 2 NILLFGKTGQVGWELQRSLA-P-----V----------GNLIALDVHSKEF--CGDFS-------------------NPK 44 (299)
T ss_dssp EEEEECTTSHHHHHHHHHTT-T-----T----------SEEEEECTTCSSS--CCCTT-------------------CHH
T ss_pred eEEEECCCCHHHHHHHHHhh-c-----C----------CeEEEeccccccc--cccCC-------------------CHH
Confidence 7899998 777777766665 3 6 3578888753111 01121 112
Q ss_pred CHHHHHhhcCCcEEEeccCCCCC----------------CCHHHHHHcccCCCCCCEEEecC
Q 040403 418 SLVEVVQQVKPDVLLGLSAVGGL----------------FSKEVLEAMRGSTSTRPAIFAMS 463 (623)
Q Consensus 418 ~L~e~V~~vkptvLIG~S~~~g~----------------Ft~evv~~M~a~~~erPIIFaLS 463 (623)
++.++++..++|++|=+.+.... .|..+++++ .+..- .+||.=|
T Consensus 45 ~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~-~~~~~-~~v~~SS 104 (299)
T 1n2s_A 45 GVAETVRKLRPDVIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAA-NETGA-WVVHYST 104 (299)
T ss_dssp HHHHHHHHHCCSEEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHH-TTTTC-EEEEEEE
T ss_pred HHHHHHHhcCCCEEEECcccCCHhhhhcCHHHHHHHHHHHHHHHHHHH-HHcCC-cEEEEec
Confidence 36677776689999988765431 146778887 44433 4887655
No 393
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=50.27 E-value=13 Score=39.33 Aligned_cols=34 Identities=26% Similarity=0.371 Sum_probs=27.1
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
+.+|||+|||.||+..|..+.+. |. ++.++|+..
T Consensus 6 ~~dVvIIGaG~aGl~aA~~l~~~-----G~----------~V~liE~~~ 39 (482)
T 1ojt_A 6 EYDVVVLGGGPGGYSAAFAAADE-----GL----------KVAIVERYK 39 (482)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT-----TC----------CEEEEESSS
T ss_pred cCCEEEECCCHHHHHHHHHHHhC-----CC----------eEEEEeCCC
Confidence 45899999999999999877653 63 588999853
No 394
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}
Probab=50.09 E-value=29 Score=33.82 Aligned_cols=37 Identities=24% Similarity=0.418 Sum_probs=25.7
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 334 DFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 334 ~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+++++++||.||++ ||...|+..+.++ | -+++++|++
T Consensus 11 ~~~~k~vlVTGas~---GIG~aia~~l~~~-G----------~~V~~~~r~ 47 (269)
T 3vtz_A 11 EFTDKVAIVTGGSS---GIGLAVVDALVRY-G----------AKVVSVSLD 47 (269)
T ss_dssp TTTTCEEEESSTTS---HHHHHHHHHHHHT-T----------CEEEEEESC
T ss_pred CCCCCEEEEeCCCC---HHHHHHHHHHHHC-C----------CEEEEEeCC
Confidence 48999999999864 4445555555555 7 357888764
No 395
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=50.05 E-value=11 Score=35.03 Aligned_cols=72 Identities=21% Similarity=0.198 Sum_probs=39.6
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCC
Q 040403 338 QKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEG 416 (623)
Q Consensus 338 ~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~ 416 (623)
.+|+|.|| |-.|-.+++.|++ + | .++++++++.- ....+.. ...+.. -| ....
T Consensus 5 ~~ilItGatG~iG~~l~~~L~~----~-g----------~~V~~~~r~~~---~~~~~~~-~~~~~~--~D-----l~d~ 58 (227)
T 3dhn_A 5 KKIVLIGASGFVGSALLNEALN----R-G----------FEVTAVVRHPE---KIKIENE-HLKVKK--AD-----VSSL 58 (227)
T ss_dssp CEEEEETCCHHHHHHHHHHHHT----T-T----------CEEEEECSCGG---GCCCCCT-TEEEEC--CC-----TTCH
T ss_pred CEEEEEcCCchHHHHHHHHHHH----C-C----------CEEEEEEcCcc---cchhccC-ceEEEE--ec-----CCCH
Confidence 58999996 6666666666554 3 6 46888888521 1111110 000100 01 1122
Q ss_pred CCHHHHHhhcCCcEEEeccCC
Q 040403 417 ASLVEVVQQVKPDVLLGLSAV 437 (623)
Q Consensus 417 ~~L~e~V~~vkptvLIG~S~~ 437 (623)
.++.++++ ++|++|=+.+.
T Consensus 59 ~~~~~~~~--~~d~vi~~a~~ 77 (227)
T 3dhn_A 59 DEVCEVCK--GADAVISAFNP 77 (227)
T ss_dssp HHHHHHHT--TCSEEEECCCC
T ss_pred HHHHHHhc--CCCEEEEeCcC
Confidence 34777888 79999977643
No 396
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2
Probab=50.01 E-value=38 Score=32.41 Aligned_cols=37 Identities=22% Similarity=0.233 Sum_probs=24.7
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 334 DFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 334 ~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+|++.++||.||++ ||...|+..+.++ | -+++++|++
T Consensus 3 ~l~~k~vlVTGas~---giG~~ia~~l~~~-G----------~~V~~~~r~ 39 (253)
T 1hxh_A 3 RLQGKVALVTGGAS---GVGLEVVKLLLGE-G----------AKVAFSDIN 39 (253)
T ss_dssp TTTTCEEEETTTTS---HHHHHHHHHHHHT-T----------CEEEEECSC
T ss_pred CCCCCEEEEeCCCc---HHHHHHHHHHHHC-C----------CEEEEEeCC
Confidence 38889999999843 4445555555555 7 357887764
No 397
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*
Probab=49.54 E-value=18 Score=37.13 Aligned_cols=103 Identities=21% Similarity=0.317 Sum_probs=63.4
Q ss_pred eEEEeC-cchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCC--
Q 040403 339 KIVVAG-AGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWE-- 415 (623)
Q Consensus 339 riv~~G-AGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~-- 415 (623)
||.|+| +|..|..+|-+|... .++ ...+.|+|..-. .. .....+.+...... ...
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~----~~~--------~~el~L~Di~~~-~~------G~a~Dl~~~~~~~~---v~~~~ 59 (312)
T 3hhp_A 2 KVAVLGAAGGIGQALALLLKTQ----LPS--------GSELSLYDIAPV-TP------GVAVDLSHIPTAVK---IKGFS 59 (312)
T ss_dssp EEEEETTTSHHHHHHHHHHHHH----SCT--------TEEEEEECSSTT-HH------HHHHHHHTSCSSEE---EEEEC
T ss_pred EEEEECCCCHHHHHHHHHHHhC----CCC--------CceEEEEecCCC-ch------hHHHHhhCCCCCce---EEEec
Confidence 799999 799999998777542 133 257999999631 11 11112211000000 000
Q ss_pred CCCHHHHHhhcCCcEEEeccCCC---CC-----------CCHHHHHHcccCCCCCCEEEecCCCC
Q 040403 416 GASLVEVVQQVKPDVLLGLSAVG---GL-----------FSKEVLEAMRGSTSTRPAIFAMSNPT 466 (623)
Q Consensus 416 ~~~L~e~V~~vkptvLIG~S~~~---g~-----------Ft~evv~~M~a~~~erPIIFaLSNPt 466 (623)
..+..++.+ +.|++|=+.+.+ |- .-+++++.+ .++++.-+|+-.|||.
T Consensus 60 ~~~~~~~~~--~aDivii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i-~~~~p~a~vlvvtNPv 121 (312)
T 3hhp_A 60 GEDATPALE--GADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQV-AKTCPKACIGIITNPV 121 (312)
T ss_dssp SSCCHHHHT--TCSEEEECCSCSCCTTCCHHHHHHHHHHHHHHHHHHH-HHHCTTSEEEECSSCH
T ss_pred CCCcHHHhC--CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHCCCcEEEEecCcc
Confidence 135678888 899988665543 32 125667777 7788889999999998
No 398
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=49.38 E-value=18 Score=38.81 Aligned_cols=31 Identities=42% Similarity=0.457 Sum_probs=26.5
Q ss_pred CceEEEeCcchHHHHHHHHHHH-HHHHhcCCCcchhhhccCeEEEEc
Q 040403 337 KQKIVVAGAGSAGLGVLNAARK-TMARMLGNNESAFDSARSQFWVVD 382 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~-~m~~~~Gls~~~~eeA~~~i~lvD 382 (623)
+.+|+|+|||.||+..|..+.+ . | .++.++|
T Consensus 7 ~~dvvVIGgG~aGl~aA~~la~~~-----G----------~~V~liE 38 (495)
T 2wpf_A 7 AFDLVVIGAGSGGLEAGWNAATLY-----G----------KRVAVVD 38 (495)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHH-----C----------CCEEEEE
T ss_pred ccCEEEECCChhHHHHHHHHHHhc-----C----------CeEEEEe
Confidence 4689999999999999998877 4 7 3688999
No 399
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Probab=49.22 E-value=15 Score=37.99 Aligned_cols=33 Identities=27% Similarity=0.505 Sum_probs=26.7
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+.+|+|+|||.+|+..|..|.+. | .++.++|+.
T Consensus 3 ~~~v~iiG~G~~Gl~~A~~l~~~-----g----------~~v~v~E~~ 35 (384)
T 2bi7_A 3 SKKILIVGAGFSGAVIGRQLAEK-----G----------HQVHIIDQR 35 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT-----T----------CEEEEEESS
T ss_pred cCCEEEECcCHHHHHHHHHHHHC-----C----------CcEEEEEec
Confidence 46899999999999999888653 5 467788775
No 400
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=49.20 E-value=14 Score=39.21 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.2
Q ss_pred CceEEEeCcchHHHHHHHHHHHH
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~ 359 (623)
..+|+|+|||.||+..|..|.+.
T Consensus 4 ~~~vvIIGaG~aGL~aA~~L~~~ 26 (520)
T 1s3e_A 4 KCDVVVVGGGISGMAAAKLLHDS 26 (520)
T ss_dssp BCSEEEECCBHHHHHHHHHHHHT
T ss_pred CceEEEECCCHHHHHHHHHHHHC
Confidence 45799999999999999988874
No 401
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*
Probab=49.19 E-value=18 Score=38.63 Aligned_cols=31 Identities=35% Similarity=0.398 Sum_probs=26.4
Q ss_pred CceEEEeCcchHHHHHHHHHHH-HHHHhcCCCcchhhhccCeEEEEc
Q 040403 337 KQKIVVAGAGSAGLGVLNAARK-TMARMLGNNESAFDSARSQFWVVD 382 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~-~m~~~~Gls~~~~eeA~~~i~lvD 382 (623)
+.+|+|+|||.||+..|..+.+ . | .++.++|
T Consensus 3 ~~dvvVIGgG~aGl~aA~~la~~~-----G----------~~V~liE 34 (490)
T 1fec_A 3 AYDLVVIGAGSGGLEAGWNAASLH-----K----------KRVAVID 34 (490)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHHH-----C----------CCEEEEE
T ss_pred cccEEEECCCHHHHHHHHHHHHHc-----C----------CEEEEEe
Confidence 4689999999999999998876 4 7 3588999
No 402
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=49.07 E-value=13 Score=34.99 Aligned_cols=31 Identities=6% Similarity=0.191 Sum_probs=25.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
||+|+|+|..|..+|+.|... | .+++++|++
T Consensus 2 ~iiIiG~G~~G~~la~~L~~~-----g----------~~v~vid~~ 32 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLSR-----K----------YGVVIINKD 32 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHHT-----T----------CCEEEEESC
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C----------CeEEEEECC
Confidence 799999999999999888763 6 358888873
No 403
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=48.99 E-value=56 Score=32.77 Aligned_cols=99 Identities=17% Similarity=0.218 Sum_probs=52.6
Q ss_pred HHHHHHHHh-CCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhh
Q 040403 320 GLLGAVRAQ-GRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDA 398 (623)
Q Consensus 320 gll~A~r~~-g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~ 398 (623)
..+.+++.. +.. -.+++++|.|||..|...+++.... |- .+++.+|+ ++.+
T Consensus 157 ta~~~l~~~~~~~---~~g~~vlv~GaG~vG~~a~qla~~~-----g~---------~~Vi~~~~-----------~~~~ 208 (345)
T 3jv7_A 157 TPYHAISRVLPLL---GPGSTAVVIGVGGLGHVGIQILRAV-----SA---------ARVIAVDL-----------DDDR 208 (345)
T ss_dssp HHHHHHHTTGGGC---CTTCEEEEECCSHHHHHHHHHHHHH-----CC---------CEEEEEES-----------CHHH
T ss_pred HHHHHHHHhccCC---CCCCEEEEECCCHHHHHHHHHHHHc-----CC---------CEEEEEcC-----------CHHH
Confidence 344555553 222 2578999999998776555444332 42 46888876 3456
Q ss_pred HHhHHHhhhhcccccCCCCCHHHHHhhc----CCcEEEeccCCCCCCCHHHHHHc
Q 040403 399 KPFARKVNEISRQGLWEGASLVEVVQQV----KPDVLLGLSAVGGLFSKEVLEAM 449 (623)
Q Consensus 399 ~~fA~~~~~~~~~~~~~~~~L~e~V~~v----kptvLIG~S~~~g~Ft~evv~~M 449 (623)
..+++.-.- ........++.+.|+.. +.|+.|=+++.+. ..++.++.+
T Consensus 209 ~~~~~~lGa--~~~i~~~~~~~~~v~~~t~g~g~d~v~d~~G~~~-~~~~~~~~l 260 (345)
T 3jv7_A 209 LALAREVGA--DAAVKSGAGAADAIRELTGGQGATAVFDFVGAQS-TIDTAQQVV 260 (345)
T ss_dssp HHHHHHTTC--SEEEECSTTHHHHHHHHHGGGCEEEEEESSCCHH-HHHHHHHHE
T ss_pred HHHHHHcCC--CEEEcCCCcHHHHHHHHhCCCCCeEEEECCCCHH-HHHHHHHHH
Confidence 667653110 00001112455555543 6788887764321 224445555
No 404
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2
Probab=48.91 E-value=32 Score=32.70 Aligned_cols=36 Identities=17% Similarity=0.286 Sum_probs=24.8
Q ss_pred CCCCceEEEeCcc---hHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 334 DFPKQKIVVAGAG---SAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 334 ~l~d~riv~~GAG---sAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
++++.++||.||+ ..|.+||+.|.+ + | -+++++|+.
T Consensus 11 ~~~~k~vlITGa~~~~giG~~ia~~l~~----~-G----------~~V~~~~r~ 49 (271)
T 3ek2_A 11 FLDGKRILLTGLLSNRSIAYGIAKACKR----E-G----------AELAFTYVG 49 (271)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHH----T-T----------CEEEEEESS
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHH----c-C----------CCEEEEecc
Confidence 4889999999985 344445555544 3 7 368888875
No 405
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=48.85 E-value=31 Score=34.80 Aligned_cols=33 Identities=21% Similarity=0.197 Sum_probs=22.1
Q ss_pred HHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHH
Q 040403 321 LLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAAR 357 (623)
Q Consensus 321 ll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~ 357 (623)
.+.+++..+.+ .+++|+|+|||..|...+++..
T Consensus 165 a~~~l~~~~~~----~g~~VlV~GaG~vG~~a~qla~ 197 (348)
T 3two_A 165 TYSPLKFSKVT----KGTKVGVAGFGGLGSMAVKYAV 197 (348)
T ss_dssp HHHHHHHTTCC----TTCEEEEESCSHHHHHHHHHHH
T ss_pred HHHHHHhcCCC----CCCEEEEECCcHHHHHHHHHHH
Confidence 35566655544 6789999999877765554443
No 406
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=48.77 E-value=18 Score=37.83 Aligned_cols=36 Identities=31% Similarity=0.415 Sum_probs=28.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCc
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGL 386 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GL 386 (623)
.+|||+|||.||+..|..|.+. +- ..+|.++|+..-
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~~-----~~--------g~~V~vie~~~~ 38 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRKK-----YP--------QAEISLIDKQAT 38 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----CS--------SSEEEEECSSSC
T ss_pred CCEEEECCCHHHHHHHHHHHhh-----Cc--------CCcEEEEECCCC
Confidence 4899999999999999988764 21 147899998653
No 407
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=48.74 E-value=16 Score=35.13 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=27.0
Q ss_pred CCCCceEEEeCc-ch-HHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 334 DFPKQKIVVAGA-GS-AGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 334 ~l~d~riv~~GA-Gs-Ag~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+++++++||.|| |+ .|..+|+.+++. | -+++++|++
T Consensus 19 ~l~~k~vlITGasg~GIG~~~a~~l~~~-----G----------~~V~~~~r~ 56 (266)
T 3o38_A 19 LLKGKVVLVTAAAGTGIGSTTARRALLE-----G----------ADVVISDYH 56 (266)
T ss_dssp TTTTCEEEESSCSSSSHHHHHHHHHHHT-----T----------CEEEEEESC
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHC-----C----------CEEEEecCC
Confidence 378999999999 64 777777777653 7 358888874
No 408
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=48.70 E-value=15 Score=38.50 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=19.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 040403 338 QKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~ 359 (623)
.+|+|+|||.||+..|..|.+.
T Consensus 40 ~~v~iiGaG~aGl~aA~~l~~~ 61 (495)
T 2vvm_A 40 WDVIVIGGGYCGLTATRDLTVA 61 (495)
T ss_dssp EEEEEECCBHHHHHHHHHHHHT
T ss_pred CCEEEECCcHHHHHHHHHHHHC
Confidence 6999999999999999888764
No 409
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=48.51 E-value=15 Score=41.55 Aligned_cols=35 Identities=20% Similarity=0.394 Sum_probs=28.7
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
...+|||+|||.||+..|..+... | .++.++|+..
T Consensus 388 ~~~~VvIIGgGpAGl~aA~~L~~~-----G----------~~Vtlie~~~ 422 (729)
T 1o94_A 388 NKDSVLIVGAGPSGSEAARVLMES-----G----------YTVHLTDTAE 422 (729)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHT-----T----------CEEEEECSSS
T ss_pred CCceEEEECCCHHHHHHHHHHHHC-----C----------CeEEEEeCCC
Confidence 457999999999999999988763 6 3588999864
No 410
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=48.41 E-value=14 Score=38.36 Aligned_cols=34 Identities=21% Similarity=0.357 Sum_probs=26.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.+|+|+|||-+|+..|..|.+. |.+ .++.++++.
T Consensus 3 ~dVvVIGaGiaGLsaA~~L~~~-----G~~--------~~V~vlEa~ 36 (477)
T 3nks_A 3 RTVVVLGGGISGLAASYHLSRA-----PCP--------PKVVLVESS 36 (477)
T ss_dssp CEEEEECCBHHHHHHHHHHHTS-----SSC--------CEEEEECSS
T ss_pred ceEEEECCcHHHHHHHHHHHhC-----CCC--------CcEEEEeCC
Confidence 4899999999999999988764 741 156777664
No 411
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=48.03 E-value=14 Score=39.06 Aligned_cols=33 Identities=30% Similarity=0.443 Sum_probs=27.1
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+.+|+|+|||.||+..|..+.+. | .++.++|+.
T Consensus 20 ~~dVvIIGgG~aGl~aA~~la~~-----G----------~~V~liE~~ 52 (478)
T 3dk9_A 20 SYDYLVIGGGSGGLASARRAAEL-----G----------ARAAVVESH 52 (478)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHT-----T----------CCEEEEESS
T ss_pred CCCEEEECCCHHHHHHHHHHHhC-----C----------CeEEEEecC
Confidence 46899999999999999888764 7 357888865
No 412
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Probab=48.02 E-value=38 Score=34.41 Aligned_cols=74 Identities=22% Similarity=0.261 Sum_probs=43.3
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhh-h-hccccc
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVN-E-ISRQGL 413 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~-~-~~~~~~ 413 (623)
.+++|+|.|||..|...+++.... |. ++++.+|+. +.+..+++.-. + .-+ .
T Consensus 190 ~g~~VlV~GaG~vG~~avqla~~~-----Ga---------~~Vi~~~~~-----------~~~~~~~~~lGa~~vi~--~ 242 (373)
T 2fzw_A 190 PGSVCAVFGLGGVGLAVIMGCKVA-----GA---------SRIIGVDIN-----------KDKFARAKEFGATECIN--P 242 (373)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHH-----TC---------SEEEEECSC-----------GGGHHHHHHHTCSEEEC--G
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-----CC---------CeEEEEcCC-----------HHHHHHHHHcCCceEec--c
Confidence 578999999998777666555443 73 468888752 34555664211 0 000 0
Q ss_pred CC-CCCHHHHHhhc---CCcEEEeccC
Q 040403 414 WE-GASLVEVVQQV---KPDVLLGLSA 436 (623)
Q Consensus 414 ~~-~~~L~e~V~~v---kptvLIG~S~ 436 (623)
.. ..++.+.++.. +.|++|=+++
T Consensus 243 ~~~~~~~~~~v~~~~~~g~D~vid~~g 269 (373)
T 2fzw_A 243 QDFSKPIQEVLIEMTDGGVDYSFECIG 269 (373)
T ss_dssp GGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred ccccccHHHHHHHHhCCCCCEEEECCC
Confidence 11 13566666543 5788887764
No 413
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*
Probab=47.99 E-value=15 Score=40.40 Aligned_cols=34 Identities=21% Similarity=0.411 Sum_probs=27.6
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
+..|+|+|+|.+|+++|..+... |+ ++.++|+..
T Consensus 32 ~~DVvVIGgGi~G~~~A~~La~r-----G~----------~V~LlE~~~ 65 (571)
T 2rgh_A 32 ELDLLIIGGGITGAGVAVQAAAS-----GI----------KTGLIEMQD 65 (571)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHT-----TC----------CEEEECSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHC-----CC----------cEEEEeCCC
Confidence 35799999999999999988764 84 477888754
No 414
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*
Probab=47.60 E-value=9.8 Score=37.82 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=27.3
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
....|+|+|||.+|+.+|-.|. . | .++.++|+..
T Consensus 8 ~~~dv~IIGaGi~Gls~A~~La-~-----G----------~~V~vlE~~~ 41 (381)
T 3nyc_A 8 IEADYLVIGAGIAGASTGYWLS-A-----H----------GRVVVLEREA 41 (381)
T ss_dssp EECSEEEECCSHHHHHHHHHHT-T-----T----------SCEEEECSSS
T ss_pred CcCCEEEECCcHHHHHHHHHHh-C-----C----------CCEEEEECCC
Confidence 3578999999999999998886 2 6 3578888863
No 415
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Probab=47.51 E-value=16 Score=39.35 Aligned_cols=27 Identities=33% Similarity=0.543 Sum_probs=23.1
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNN 367 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls 367 (623)
.+..|+|+|||.+|+..|-.|... |++
T Consensus 11 ~~~dVlIVGaGpaGl~~A~~La~~-----G~~ 37 (499)
T 2qa2_A 11 SDASVIVVGAGPAGLMLAGELRLG-----GVD 37 (499)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHT-----TCC
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC-----CCC
Confidence 578999999999999999888764 864
No 416
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Probab=47.51 E-value=28 Score=34.67 Aligned_cols=80 Identities=19% Similarity=0.234 Sum_probs=45.2
Q ss_pred eEEEeCcchHHHHH-HHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccC-CC
Q 040403 339 KIVVAGAGSAGLGV-LNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLW-EG 416 (623)
Q Consensus 339 riv~~GAGsAg~GI-A~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~-~~ 416 (623)
||.|+|+|..|..+ +..+.. . |. +-+.++|++ .+..+.+++. + +.. ..
T Consensus 2 ~vgiiG~G~~g~~~~~~~l~~----~-~~---------~~vav~d~~----------~~~~~~~~~~---~---g~~~~~ 51 (332)
T 2glx_A 2 RWGLIGASTIAREWVIGAIRA----T-GG---------EVVSMMSTS----------AERGAAYATE---N---GIGKSV 51 (332)
T ss_dssp EEEEESCCHHHHHTHHHHHHH----T-TC---------EEEEEECSC----------HHHHHHHHHH---T---TCSCCB
T ss_pred eEEEEcccHHHHHhhhHHhhc----C-CC---------eEEEEECCC----------HHHHHHHHHH---c---CCCccc
Confidence 79999999887665 554433 2 43 234567763 1122344432 1 122 35
Q ss_pred CCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHc
Q 040403 417 ASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAM 449 (623)
Q Consensus 417 ~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M 449 (623)
.++.|+++.-++|+++= ++.+..--+-+.+++
T Consensus 52 ~~~~~~l~~~~~D~V~i-~tp~~~h~~~~~~al 83 (332)
T 2glx_A 52 TSVEELVGDPDVDAVYV-STTNELHREQTLAAI 83 (332)
T ss_dssp SCHHHHHTCTTCCEEEE-CSCGGGHHHHHHHHH
T ss_pred CCHHHHhcCCCCCEEEE-eCChhHhHHHHHHHH
Confidence 78999998667898874 433333334444455
No 417
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=47.47 E-value=18 Score=37.84 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=19.7
Q ss_pred CceEEEeCcchHHHHHHHHHHHH
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~ 359 (623)
+.-|||+|||-+|+..|..|.++
T Consensus 10 ~~DVvIIGaGisGLsaA~~L~k~ 32 (513)
T 4gde_A 10 SVDVLVIGAGPTGLGAAKRLNQI 32 (513)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHH
T ss_pred CCCEEEECCcHHHHHHHHHHHhh
Confidence 35699999999999999988763
No 418
>3lup_A DEGV family protein; PSI-2, MCSG, structural genomics, fatty acid binding, protei structure initiative; HET: ELA; 2.65A {Streptococcus agalactiae} SCOP: c.119.1.0
Probab=47.41 E-value=9.4 Score=38.75 Aligned_cols=89 Identities=12% Similarity=0.145 Sum_probs=50.8
Q ss_pred HHHHHHHHHH--hCCce-eeecccCCCchHHHHHHH--Hhcc-CCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCce
Q 040403 266 IDEFMEAIFT--RWPNV-IVQFEDFQSKWAFKLLQR--YRYK-YRMFNDDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQK 339 (623)
Q Consensus 266 vdefv~av~~--~~P~~-lIqfEDf~~~nAf~lL~r--yr~~-~~~FNDDiQGTaaV~lAgll~A~r~~g~~~~~l~d~r 339 (623)
.+||.+.+++ ..|++ ...-+|| .++|+=|.+ |.+- +.++..-.=||=-.+ +..... ..+.+
T Consensus 48 ~~efy~~~~~~~~~p~TSqps~~~~--~~~f~~l~~~g~d~ii~i~iSs~LSGTy~sA--------~~a~~~---~~~~~ 114 (285)
T 3lup_A 48 LDQYYDKLAASKELPKTSQPSLAEL--DDLLCQLEKEGYTHVLGLFIAAGISGFWQNI--------QFLIEE---HPNLT 114 (285)
T ss_dssp HHHHHHHHHHCSSCCEECCCCHHHH--HHHHHHHHHTTCCEEEECCSCGGGCTHHHHH--------TTHHHH---CTTSE
T ss_pred HHHHHHHHHhCCCCceeCCCCHHHH--HHHHHHHHHcCCCeEEEEeCCCchhHHHHHH--------HHHHHh---CCCCC
Confidence 5888888875 24764 4444444 233322211 1111 234455556663322 222233 55779
Q ss_pred EEEeCcchHHHHHHHHHHHH--HHHhcCCCc
Q 040403 340 IVVAGAGSAGLGVLNAARKT--MARMLGNNE 368 (623)
Q Consensus 340 iv~~GAGsAg~GIA~ll~~~--m~~~~Gls~ 368 (623)
|-++-..+++.|..-++..+ |.++ |.|.
T Consensus 115 I~ViDS~~~s~g~g~~v~~A~~l~~~-G~s~ 144 (285)
T 3lup_A 115 IAFPDTKITSAPQGNLVRNALMCSRE-GMDF 144 (285)
T ss_dssp EECCCCCCCHHHHHHHHHHHHHHHTT-TCCH
T ss_pred EEEEcCCchHHHHHHHHHHHHHHHHc-CCCH
Confidence 99999988888888777775 4555 9886
No 419
>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}
Probab=47.36 E-value=29 Score=34.48 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=17.7
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 040403 338 QKIVVAGAGSAGLGVLNAARK 358 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~ 358 (623)
.||+|+|+|..|--+++.+.+
T Consensus 4 mkI~ViGaGrMG~~i~~~l~~ 24 (243)
T 3qy9_A 4 MKILLIGYGAMNQRVARLAEE 24 (243)
T ss_dssp CEEEEECCSHHHHHHHHHHHH
T ss_pred eEEEEECcCHHHHHHHHHHHh
Confidence 589999999999888777765
No 420
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=47.22 E-value=40 Score=34.26 Aligned_cols=45 Identities=18% Similarity=0.256 Sum_probs=29.6
Q ss_pred HHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEcc
Q 040403 321 LLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDA 383 (623)
Q Consensus 321 ll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~ 383 (623)
.+.+++..+.+ ..+++|+|.|+|..|...+++.... |. +++.+|+
T Consensus 168 a~~~l~~~~~~---~~g~~VlV~GaG~vG~~a~qlak~~-----Ga----------~Vi~~~~ 212 (357)
T 2cf5_A 168 VYSPLSHFGLK---QPGLRGGILGLGGVGHMGVKIAKAM-----GH----------HVTVISS 212 (357)
T ss_dssp HHHHHHHTSTT---STTCEEEEECCSHHHHHHHHHHHHH-----TC----------EEEEEES
T ss_pred HHHHHHhcCCC---CCCCEEEEECCCHHHHHHHHHHHHC-----CC----------eEEEEeC
Confidence 34556554443 3678999999998777666555442 72 5777776
No 421
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1
Probab=47.21 E-value=41 Score=34.21 Aligned_cols=75 Identities=23% Similarity=0.279 Sum_probs=43.2
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWE 415 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~ 415 (623)
.+++|+|+|+|..|...+++.... |. ++++.+|+ ++.+..+++.-.- ..--...
T Consensus 190 ~g~~VlV~GaG~vG~~a~qlak~~-----Ga---------~~Vi~~~~-----------~~~~~~~a~~lGa-~~vi~~~ 243 (371)
T 1f8f_A 190 PASSFVTWGAGAVGLSALLAAKVC-----GA---------SIIIAVDI-----------VESRLELAKQLGA-THVINSK 243 (371)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHH-----TC---------SEEEEEES-----------CHHHHHHHHHHTC-SEEEETT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-----CC---------CeEEEECC-----------CHHHHHHHHHcCC-CEEecCC
Confidence 578999999998777666555432 73 46888876 2455666643110 0000011
Q ss_pred CCCHHHHHhhc---CCcEEEeccC
Q 040403 416 GASLVEVVQQV---KPDVLLGLSA 436 (623)
Q Consensus 416 ~~~L~e~V~~v---kptvLIG~S~ 436 (623)
..++.+.++.. +.|++|=+++
T Consensus 244 ~~~~~~~~~~~~~gg~D~vid~~g 267 (371)
T 1f8f_A 244 TQDPVAAIKEITDGGVNFALESTG 267 (371)
T ss_dssp TSCHHHHHHHHTTSCEEEEEECSC
T ss_pred ccCHHHHHHHhcCCCCcEEEECCC
Confidence 23555555543 5788887664
No 422
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=47.21 E-value=15 Score=38.69 Aligned_cols=34 Identities=24% Similarity=0.429 Sum_probs=26.9
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
+..|+|+|||.||+..|-.+.+. |+ ++.++|+..
T Consensus 26 ~~dVvIIGgG~aGl~aA~~la~~-----G~----------~V~llEk~~ 59 (447)
T 2i0z_A 26 HYDVIVIGGGPSGLMAAIGAAEE-----GA----------NVLLLDKGN 59 (447)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHT-----TC----------CEEEECSSS
T ss_pred CCCEEEECCcHHHHHHHHHHHHC-----CC----------CEEEEECCC
Confidence 35799999999999998877653 73 578888764
No 423
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Probab=47.19 E-value=21 Score=37.48 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.5
Q ss_pred CceEEEeCcchHHHHHHHHHHHH
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~ 359 (623)
..+|+|+|||.+|+..|..|.+.
T Consensus 33 ~~~v~IiGaG~~Gl~aA~~l~~~ 55 (498)
T 2iid_A 33 PKHVVIVGAGMAGLSAAYVLAGA 55 (498)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHhC
Confidence 56899999999999999988775
No 424
>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*
Probab=47.17 E-value=34 Score=34.23 Aligned_cols=49 Identities=18% Similarity=0.171 Sum_probs=33.1
Q ss_pred HHHHHHHHHH-HHhCCCCCCCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEcc
Q 040403 316 VAVAGLLGAV-RAQGRSMIDFPKQKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDA 383 (623)
Q Consensus 316 V~lAgll~A~-r~~g~~~~~l~d~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~ 383 (623)
+.++..+.++ +..+.+ .+++|+|.|| |..|..+++++... |. +++.+|+
T Consensus 132 ~~~~tA~~al~~~~~~~----~g~~vlI~Ga~g~iG~~~~~~a~~~-----Ga----------~Vi~~~~ 182 (336)
T 4b7c_A 132 MTGMTAYFALLDVGQPK----NGETVVISGAAGAVGSVAGQIARLK-----GC----------RVVGIAG 182 (336)
T ss_dssp HHHHHHHHHHHHTTCCC----TTCEEEESSTTSHHHHHHHHHHHHT-----TC----------EEEEEES
T ss_pred cHHHHHHHHHHHhcCCC----CCCEEEEECCCCHHHHHHHHHHHHC-----CC----------EEEEEeC
Confidence 4556666677 444444 6889999999 88887776655542 72 5787775
No 425
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}
Probab=47.11 E-value=14 Score=39.57 Aligned_cols=35 Identities=26% Similarity=0.411 Sum_probs=27.3
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
.+..|+|+|||.+|+..|-.|... |+ ++.++|+.-
T Consensus 4 ~~~dVlIVGaG~aGl~~A~~La~~-----G~----------~v~viEr~~ 38 (535)
T 3ihg_A 4 HEVDVLVVGAGLGGLSTAMFLARQ-----GV----------RVLVVERRP 38 (535)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHTT-----TC----------CEEEECSSS
T ss_pred ccCcEEEECcCHHHHHHHHHHHHC-----CC----------CEEEEeCCC
Confidence 357899999999999999888763 75 366777653
No 426
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A
Probab=47.00 E-value=30 Score=34.90 Aligned_cols=97 Identities=11% Similarity=0.117 Sum_probs=52.0
Q ss_pred HHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHH
Q 040403 321 LLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKP 400 (623)
Q Consensus 321 ll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~ 400 (623)
.+.+++..+.+ .+++|+|.|||..|..+++++.. .|. +++.+|+. +.+..
T Consensus 153 a~~~l~~~~~~----~g~~VlV~GaG~vG~~~~~~a~~-----~Ga----------~Vi~~~~~-----------~~~~~ 202 (339)
T 1rjw_A 153 TYKALKVTGAK----PGEWVAIYGIGGLGHVAVQYAKA-----MGL----------NVVAVDIG-----------DEKLE 202 (339)
T ss_dssp HHHHHHHHTCC----TTCEEEEECCSTTHHHHHHHHHH-----TTC----------EEEEECSC-----------HHHHH
T ss_pred HHHHHHhcCCC----CCCEEEEECCCHHHHHHHHHHHH-----cCC----------EEEEEeCC-----------HHHHH
Confidence 45566655544 57899999998877666655543 262 57777752 34455
Q ss_pred hHHHhhhhcccccCCCCCHHHHHhh--cCCcEEEeccCCCCCCCHHHHHHc
Q 040403 401 FARKVNEISRQGLWEGASLVEVVQQ--VKPDVLLGLSAVGGLFSKEVLEAM 449 (623)
Q Consensus 401 fA~~~~~~~~~~~~~~~~L~e~V~~--vkptvLIG~S~~~g~Ft~evv~~M 449 (623)
+++.-.- ..--.....++.+.++. -+.|++|=+++.+ ...++.++.|
T Consensus 203 ~~~~lGa-~~~~d~~~~~~~~~~~~~~~~~d~vid~~g~~-~~~~~~~~~l 251 (339)
T 1rjw_A 203 LAKELGA-DLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSK-PAFQSAYNSI 251 (339)
T ss_dssp HHHHTTC-SEEECTTTSCHHHHHHHHHSSEEEEEESSCCH-HHHHHHHHHE
T ss_pred HHHHCCC-CEEecCCCccHHHHHHHHhCCCCEEEECCCCH-HHHHHHHHHh
Confidence 5542100 00000111345555543 2678888776421 1224455555
No 427
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=46.85 E-value=40 Score=33.42 Aligned_cols=39 Identities=8% Similarity=0.108 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHH
Q 040403 316 VAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARK 358 (623)
Q Consensus 316 V~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~ 358 (623)
..++..+.|++..+.+ .+++|+|.|||+.|...+++...
T Consensus 126 ~~~~ta~~al~~~~~~----~g~~VlV~GaG~vG~~a~qlak~ 164 (315)
T 3goh_A 126 CPLLTAWQAFEKIPLT----KQREVLIVGFGAVNNLLTQMLNN 164 (315)
T ss_dssp HHHHHHHHHHTTSCCC----SCCEEEEECCSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhcCCC----CCCEEEEECCCHHHHHHHHHHHH
Confidence 4455566666444443 68899999999888766655544
No 428
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*
Probab=46.77 E-value=23 Score=35.98 Aligned_cols=88 Identities=13% Similarity=0.221 Sum_probs=45.1
Q ss_pred CCCceEEEeCcchHHHHH-HHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhh-h-hccc
Q 040403 335 FPKQKIVVAGAGSAGLGV-LNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVN-E-ISRQ 411 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GI-A~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~-~-~~~~ 411 (623)
++.++|+|+|||..|... +++...+ .|. ++++.+|+. .. .+++..+++.-. + . +
T Consensus 171 ~~~~~VlV~GaG~vG~~a~iqla~k~----~Ga---------~~Vi~~~~~----~~----~~~~~~~~~~lGa~~v-~- 227 (357)
T 2b5w_A 171 WDPSSAFVLGNGSLGLLTLAMLKVDD----KGY---------ENLYCLGRR----DR----PDPTIDIIEELDATYV-D- 227 (357)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHCT----TCC---------CEEEEEECC----CS----SCHHHHHHHHTTCEEE-E-
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHH----cCC---------cEEEEEeCC----cc----cHHHHHHHHHcCCccc-C-
Confidence 334899999998777655 4443022 273 458888873 10 112556664310 0 1 1
Q ss_pred ccCCCCCHHHHHhhc--CCcEEEeccCCCCCCCHHHHHHc
Q 040403 412 GLWEGASLVEVVQQV--KPDVLLGLSAVGGLFSKEVLEAM 449 (623)
Q Consensus 412 ~~~~~~~L~e~V~~v--kptvLIG~S~~~g~Ft~evv~~M 449 (623)
....++.+ ++.. +.|++|=+++.+. ..++.++.|
T Consensus 228 --~~~~~~~~-i~~~~gg~Dvvid~~g~~~-~~~~~~~~l 263 (357)
T 2b5w_A 228 --SRQTPVED-VPDVYEQMDFIYEATGFPK-HAIQSVQAL 263 (357)
T ss_dssp --TTTSCGGG-HHHHSCCEEEEEECSCCHH-HHHHHHHHE
T ss_pred --CCccCHHH-HHHhCCCCCEEEECCCChH-HHHHHHHHH
Confidence 01123333 3322 6788887775321 224555555
No 429
>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*
Probab=46.76 E-value=30 Score=34.63 Aligned_cols=50 Identities=14% Similarity=0.044 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEcc
Q 040403 316 VAVAGLLGAVRAQGRSMIDFPKQKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDA 383 (623)
Q Consensus 316 V~lAgll~A~r~~g~~~~~l~d~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~ 383 (623)
+.++..+.|+.-.... -.+++|+|.|| |..|..+++++... | -+++.+|+
T Consensus 138 ~~~~ta~~al~~~~~~---~~g~~vlI~Ga~g~iG~~~~~~a~~~-----G----------~~V~~~~~ 188 (345)
T 2j3h_A 138 MPGMTAYAGFYEVCSP---KEGETVYVSAASGAVGQLVGQLAKMM-----G----------CYVVGSAG 188 (345)
T ss_dssp HHHHHHHHHHHTTSCC---CTTCEEEESSTTSHHHHHHHHHHHHT-----T----------CEEEEEES
T ss_pred ccHHHHHHHHHHHhCC---CCCCEEEEECCCcHHHHHHHHHHHHC-----C----------CEEEEEeC
Confidence 3445555666332222 35789999997 88887777665542 7 25787776
No 430
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*
Probab=46.74 E-value=17 Score=34.57 Aligned_cols=93 Identities=14% Similarity=0.136 Sum_probs=54.5
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWE 415 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~ 415 (623)
...||.|+|+|..|..+|..+... |. +++++|++- +..+.+++. . ..
T Consensus 27 ~~~~I~iiG~G~~G~~la~~l~~~-----g~----------~V~~~~r~~----------~~~~~~~~~--g-----~~- 73 (215)
T 2vns_A 27 EAPKVGILGSGDFARSLATRLVGS-----GF----------KVVVGSRNP----------KRTARLFPS--A-----AQ- 73 (215)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHT-----TC----------CEEEEESSH----------HHHHHHSBT--T-----SE-
T ss_pred CCCEEEEEccCHHHHHHHHHHHHC-----CC----------EEEEEeCCH----------HHHHHHHHc--C-----Cc-
Confidence 456899999999999999888653 62 477888731 111112110 1 01
Q ss_pred CCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCC
Q 040403 416 GASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTN 467 (623)
Q Consensus 416 ~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~ 467 (623)
..++.++++ ++|++|=+. .+. ..+++++ + +...+.-+|.-+||+.+
T Consensus 74 ~~~~~~~~~--~~DvVi~av-~~~-~~~~v~~-l-~~~~~~~~vv~~s~g~~ 119 (215)
T 2vns_A 74 VTFQEEAVS--SPEVIFVAV-FRE-HYSSLCS-L-SDQLAGKILVDVSNPTE 119 (215)
T ss_dssp EEEHHHHTT--SCSEEEECS-CGG-GSGGGGG-G-HHHHTTCEEEECCCCCH
T ss_pred eecHHHHHh--CCCEEEECC-ChH-HHHHHHH-H-HHhcCCCEEEEeCCCcc
Confidence 126888887 789888433 332 2345543 3 22234568888888763
No 431
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=46.58 E-value=18 Score=35.44 Aligned_cols=35 Identities=26% Similarity=0.291 Sum_probs=24.4
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.+.--++|+|||.||+-.|-.+.+ . |+ ++.++|+.
T Consensus 4 M~~yDVvIIGaGpAGlsAA~~lar----~-g~----------~v~lie~~ 38 (304)
T 4fk1_A 4 MKYIDCAVIGAGPAGLNASLVLGR----A-RK----------QIALFDNN 38 (304)
T ss_dssp --CEEEEEECCSHHHHHHHHHHHH----T-TC----------CEEEEECS
T ss_pred CCCcCEEEECCCHHHHHHHHHHHH----C-CC----------CEEEEeCC
Confidence 455679999999999887755543 2 63 57788874
No 432
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=46.46 E-value=16 Score=38.51 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=26.8
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+..|+|+|||.||+..|..+.+. | .++.++|+.
T Consensus 5 ~~DVvVIGaG~aGl~aA~~la~~-----G----------~~V~liEk~ 37 (463)
T 4dna_A 5 DYDLFVIGGGSGGVRSGRLAAAL-----G----------KKVAIAEEF 37 (463)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTT-----T----------CCEEEEESS
T ss_pred CCcEEEECcCHHHHHHHHHHHhC-----C----------CEEEEEeCC
Confidence 46899999999999999887653 7 358889873
No 433
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}
Probab=46.43 E-value=18 Score=37.23 Aligned_cols=36 Identities=31% Similarity=0.405 Sum_probs=27.4
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
...|+|+|||.+|+.+|-.|.+.. -| .++.++|+..
T Consensus 36 ~~dVvIIGaGi~Gls~A~~La~~~---pG----------~~V~vlE~~~ 71 (405)
T 3c4n_A 36 AFDIVVIGAGRMGAACAFYLRQLA---PG----------RSLLLVEEGG 71 (405)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHC---TT----------SCEEEECSSC
T ss_pred cCCEEEECCcHHHHHHHHHHHhcC---CC----------CeEEEEeCCC
Confidence 368999999999999998887620 04 3588888753
No 434
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0
Probab=46.37 E-value=1.1e+02 Score=29.69 Aligned_cols=37 Identities=16% Similarity=0.215 Sum_probs=26.3
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 334 DFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 334 ~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+|+++++||.||++ ||...|+..+.++ | -+++++|+.
T Consensus 12 ~l~gk~~lVTGas~---gIG~a~a~~la~~-G----------~~V~~~~r~ 48 (280)
T 3pgx_A 12 SLQGRVAFITGAAR---GQGRSHAVRLAAE-G----------ADIIACDIC 48 (280)
T ss_dssp TTTTCEEEEESTTS---HHHHHHHHHHHHT-T----------CEEEEEECC
T ss_pred ccCCCEEEEECCCc---HHHHHHHHHHHHC-C----------CEEEEEecc
Confidence 38899999999864 4445555555555 7 468888874
No 435
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=46.25 E-value=15 Score=38.48 Aligned_cols=34 Identities=29% Similarity=0.342 Sum_probs=26.9
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
+..|+|+|||.||+..|..+.+. |. ++.++|+..
T Consensus 4 ~~dViIIGgG~aGl~aA~~la~~-----G~----------~V~vlEk~~ 37 (401)
T 2gqf_A 4 YSENIIIGAGAAGLFCAAQLAKL-----GK----------SVTVFDNGK 37 (401)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHT-----TC----------CEEEECSSS
T ss_pred CCCEEEECCcHHHHHHHHHHHhC-----CC----------CEEEEeCCC
Confidence 35799999999999998887763 73 577888764
No 436
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Probab=46.25 E-value=14 Score=39.61 Aligned_cols=35 Identities=14% Similarity=0.339 Sum_probs=27.0
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
.+.+|+|+|||.||+..|-.|... |+ ++.++|+.-
T Consensus 6 ~~~dVvIVGgG~aGl~aA~~La~~-----G~----------~V~liE~~~ 40 (512)
T 3e1t_A 6 EVFDLIVIGGGPGGSTLASFVAMR-----GH----------RVLLLEREA 40 (512)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTT-----TC----------CEEEECSSC
T ss_pred ccCCEEEECcCHHHHHHHHHHHhC-----CC----------CEEEEccCC
Confidence 346899999999999998877652 74 467777764
No 437
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}
Probab=46.25 E-value=45 Score=33.29 Aligned_cols=102 Identities=14% Similarity=0.160 Sum_probs=58.4
Q ss_pred CCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhccccc
Q 040403 335 FPKQKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGL 413 (623)
Q Consensus 335 l~d~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~ 413 (623)
+...+|+|.|| |-.|..+++.|++. .| -+++.+|+.. ..+.... ....-.+-....
T Consensus 22 m~~~~vlVtGatG~iG~~l~~~L~~~----~g----------~~V~~~~r~~------~~~~~~~---~~~~v~~~~~Dl 78 (372)
T 3slg_A 22 MKAKKVLILGVNGFIGHHLSKRILET----TD----------WEVFGMDMQT------DRLGDLV---KHERMHFFEGDI 78 (372)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHH----SS----------CEEEEEESCC------TTTGGGG---GSTTEEEEECCT
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhC----CC----------CEEEEEeCCh------hhhhhhc---cCCCeEEEeCcc
Confidence 67789999996 88888888777663 13 3688888742 1111110 000000000001
Q ss_pred C-CCCCHHHHHhhcCCcEEEeccCCCC----------------CCCHHHHHHcccCCCCCCEEEecC
Q 040403 414 W-EGASLVEVVQQVKPDVLLGLSAVGG----------------LFSKEVLEAMRGSTSTRPAIFAMS 463 (623)
Q Consensus 414 ~-~~~~L~e~V~~vkptvLIG~S~~~g----------------~Ft~evv~~M~a~~~erPIIFaLS 463 (623)
. ...++.++++ ++|++|=+.+... .-|..+++++ .+.. +.+||.=|
T Consensus 79 ~~d~~~~~~~~~--~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~-~~~~-~~~v~~SS 141 (372)
T 3slg_A 79 TINKEWVEYHVK--KCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSA-VKYG-KHLVFPST 141 (372)
T ss_dssp TTCHHHHHHHHH--HCSEEEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHH-HHHT-CEEEEECC
T ss_pred CCCHHHHHHHhc--cCCEEEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHH-HHhC-CcEEEeCc
Confidence 1 2234777887 7999997665432 2356788888 5555 77888655
No 438
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=46.23 E-value=29 Score=34.87 Aligned_cols=45 Identities=24% Similarity=0.392 Sum_probs=29.6
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEcc
Q 040403 320 GLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDA 383 (623)
Q Consensus 320 gll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~ 383 (623)
..+.+++..+.+ .+++|+|.|||..|...+++... .|. +++.+|+
T Consensus 154 ta~~~l~~~~~~----~g~~VlV~GaG~vG~~a~qla~~-----~Ga----------~Vi~~~~ 198 (340)
T 3s2e_A 154 TVYKGLKVTDTR----PGQWVVISGIGGLGHVAVQYARA-----MGL----------RVAAVDI 198 (340)
T ss_dssp HHHHHHHTTTCC----TTSEEEEECCSTTHHHHHHHHHH-----TTC----------EEEEEES
T ss_pred HHHHHHHHcCCC----CCCEEEEECCCHHHHHHHHHHHH-----CCC----------eEEEEeC
Confidence 345566665544 67899999999877665544443 272 5777776
No 439
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}
Probab=46.07 E-value=19 Score=36.67 Aligned_cols=20 Identities=45% Similarity=0.665 Sum_probs=18.1
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 040403 339 KIVVAGAGSAGLGVLNAARK 358 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~ 358 (623)
+|+|+|||.||+..|-.|..
T Consensus 2 dV~IVGaG~aGl~~A~~L~~ 21 (381)
T 3c4a_A 2 KILVIGAGPAGLVFASQLKQ 21 (381)
T ss_dssp EEEEECCSHHHHHHHHHHHH
T ss_pred eEEEECCCHHHHHHHHHHHh
Confidence 69999999999999988876
No 440
>2dt8_A DEGV family protein; fatty acid binding, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: PLM; 1.48A {Thermus thermophilus}
Probab=46.03 E-value=12 Score=37.89 Aligned_cols=130 Identities=17% Similarity=0.272 Sum_probs=68.7
Q ss_pred eEEEEecCceeeccCCCCCccccchhhhHHHHHHhcCCCCCCeeeEEeeccCCccccccCcCCCCcCCCCCCchhhhHhH
Q 040403 187 DMIVVTDGSRILGLGDLGVQGIGIAVGKLDLYVAAAGINPQRVLPIMIDVGTTNEKLLKDPLYLGLQEHRLDGDEYVSVI 266 (623)
Q Consensus 187 ~viVVTDG~rILGLGDlG~~GmgI~iGKl~LY~a~gGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~Rv~g~~Y~~~v 266 (623)
++.+|||.+.=| |.-- ..--||. .+|+.+-+| +++..++ . +--.
T Consensus 2 ki~IvtDSt~dl------------~~~~----~~~~~I~---vvPl~v~~~--~~~y~D~-------------~--di~~ 45 (280)
T 2dt8_A 2 RITLVTDSTSDL------------PQDL----RGRLGVR---VVPLYVNLS--GAIYRDW-------------E--EITP 45 (280)
T ss_dssp CEEEEEEGGGCC------------CHHH----HTTTTCE---EECCEEEET--TEEEETT-------------T--TCCH
T ss_pred CEEEEEeCCCCC------------CHHH----HHhCCeE---EEEEEEEEC--CEEEecC-------------C--CCCH
Confidence 578999987433 2211 1112566 778777775 3333222 0 1124
Q ss_pred HHHHHHHHH--hCCce-eeecccCCCchHHHHH-HHHhcc--CCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceE
Q 040403 267 DEFMEAIFT--RWPNV-IVQFEDFQSKWAFKLL-QRYRYK--YRMFNDDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKI 340 (623)
Q Consensus 267 defv~av~~--~~P~~-lIqfEDf~~~nAf~lL-~ryr~~--~~~FNDDiQGTaaV~lAgll~A~r~~g~~~~~l~d~ri 340 (623)
+||.+.+++ ..|++ ...-+|| .++|+=| +.| +. +.++..-.=||- ++.+..... +.+ +|
T Consensus 46 ~efy~~~~~~~~~p~TSqps~~~~--~~~f~~l~~~~-~~ii~i~lSs~LSGTy--------~sA~~aa~~---~~~-~I 110 (280)
T 2dt8_A 46 TEIFQKVREGAAFPTTSQPSPEDF--ARVYREALEEA-DHVLSLHISGKLSGTV--------QSAELAAQE---FPG-RV 110 (280)
T ss_dssp HHHHHHHHTTCCCCEEECCCHHHH--HHHHHHHTTSC-SEEEEEESCTTTCTHH--------HHHHHHHTT---STT-SE
T ss_pred HHHHHHHHhCCCCcccCCCCHHHH--HHHHHHHHhCC-CeEEEEECCCcHhHHH--------HHHHHHHHh---CCC-CE
Confidence 788888875 34764 4444444 2333211 222 22 234444445553 333333333 334 78
Q ss_pred EEeCcchHHHHHHHHHHHH--HHHhcCCCc
Q 040403 341 VVAGAGSAGLGVLNAARKT--MARMLGNNE 368 (623)
Q Consensus 341 v~~GAGsAg~GIA~ll~~~--m~~~~Gls~ 368 (623)
-++-..+++.|..-++..+ |.++ |.|.
T Consensus 111 ~ViDS~~~s~g~g~~v~~a~~l~~~-G~s~ 139 (280)
T 2dt8_A 111 TVVDTQAASLGVGMMVLRAKELLEE-GQSL 139 (280)
T ss_dssp EEEECSCCTHHHHHHHHHHHHHHHH-TCCH
T ss_pred EEECCchhHHHHHHHHHHHHHHHHc-CCCH
Confidence 8888777777766666654 6666 9887
No 441
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=45.89 E-value=23 Score=35.79 Aligned_cols=85 Identities=15% Similarity=0.051 Sum_probs=54.3
Q ss_pred CCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccC
Q 040403 336 PKQKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLW 414 (623)
Q Consensus 336 ~d~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~ 414 (623)
+..||+|+|+ |..|--+++.+.+ . |. +-++.+|.+.. + . ..+ . .+
T Consensus 6 ~~~rVaViG~sG~~G~~~~~~l~~----~-g~---------~~V~~V~p~~~---g-~------~~~-----G-----~~ 51 (288)
T 2nu8_A 6 KNTKVICQGFTGSQGTFHSEQAIA----Y-GT---------KMVGGVTPGKG---G-T------THL-----G-----LP 51 (288)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHH----H-TC---------EEEEEECTTCT---T-C------EET-----T-----EE
T ss_pred CCCEEEEECCCChHHHHHHHHHHH----C-CC---------eEEEEeCCCcc---c-c------eeC-----C-----ee
Confidence 3579999999 9888766665544 2 63 34677887411 0 0 000 1 22
Q ss_pred CCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCC
Q 040403 415 EGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRP 457 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erP 457 (623)
-..++.|+.+..+||+.|=++ |..+..+++++. .+..-+.
T Consensus 52 vy~sl~el~~~~~~D~viI~t--P~~~~~~~~~ea-~~~Gi~~ 91 (288)
T 2nu8_A 52 VFNTVREAVAATGATASVIYV--PAPFCKDSILEA-IDAGIKL 91 (288)
T ss_dssp EESSHHHHHHHHCCCEEEECC--CGGGHHHHHHHH-HHTTCSE
T ss_pred ccCCHHHHhhcCCCCEEEEec--CHHHHHHHHHHH-HHCCCCE
Confidence 356788988766899888443 556788888887 5555554
No 442
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}
Probab=45.83 E-value=14 Score=40.53 Aligned_cols=33 Identities=27% Similarity=0.415 Sum_probs=26.9
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+--|||+|||.+|+++|..+... |+ ++.++++.
T Consensus 18 ~~DVvVIGgGi~Gl~~A~~La~~-----G~----------~V~LlEk~ 50 (561)
T 3da1_A 18 QLDLLVIGGGITGAGIALDAQVR-----GI----------QTGLVEMN 50 (561)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTT-----TC----------CEEEEESS
T ss_pred CCCEEEECCCHHHHHHHHHHHhC-----CC----------cEEEEECC
Confidence 46799999999999999887764 85 46777775
No 443
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
Probab=45.77 E-value=14 Score=44.10 Aligned_cols=41 Identities=20% Similarity=0.317 Sum_probs=32.9
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
|++.||+++|||.-|.-+++.|+.+ |+.- --.++|.++|.+
T Consensus 423 L~~~~VlvVGaGGlGsevlk~La~~-----Gv~~----g~~G~i~lvD~D 463 (1015)
T 3cmm_A 423 IANSKVFLVGSGAIGCEMLKNWALL-----GLGS----GSDGYIVVTDND 463 (1015)
T ss_dssp HHTCEEEEECCSHHHHHHHHHHHHH-----TTTC----STTCEEEEECCC
T ss_pred HhcCeEEEEecCHHHHHHHHHHHHc-----CcCc----CCCCeEEEEeCC
Confidence 4568999999999999999999887 8621 012789999986
No 444
>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=45.50 E-value=16 Score=36.40 Aligned_cols=99 Identities=11% Similarity=0.040 Sum_probs=55.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC--CcccCCCCCCChhhHHhHHHhhhhcccccCC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK--GLITEDRENIDPDAKPFARKVNEISRQGLWE 415 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~--GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~ 415 (623)
.||.|+|+|+-|..+|..|... |. +++++|+. ++-.....+. + + ..-
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~-----g~----------~V~~~~r~~~~~~~~~~~g~------~-----~-----~~~ 51 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQS-----LP----------HTTLIGRHAKTITYYTVPHA------P-----A-----QDI 51 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHH-----CT----------TCEEEESSCEEEEEESSTTS------C-----C-----EEE
T ss_pred cEEEEECCCHHHHHHHHHHHHC-----CC----------eEEEEEeccCcEEEEecCCe------e-----c-----cce
Confidence 4899999999999999988775 73 35666653 2111000000 0 0 000
Q ss_pred CCCHHHHH-hhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCC
Q 040403 416 GASLVEVV-QQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAEC 471 (623)
Q Consensus 416 ~~~L~e~V-~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~ 471 (623)
..+..+++ + .+|++| ++. +...++++++.++....+..+|..+.|-....|.
T Consensus 52 ~~~~~~~~~~--~~D~vi-lav-k~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~ 104 (294)
T 3g17_A 52 VVKGYEDVTN--TFDVII-IAV-KTHQLDAVIPHLTYLAHEDTLIILAQNGYGQLEH 104 (294)
T ss_dssp EEEEGGGCCS--CEEEEE-ECS-CGGGHHHHGGGHHHHEEEEEEEEECCSSCCCGGG
T ss_pred ecCchHhcCC--CCCEEE-EeC-CccCHHHHHHHHHHhhCCCCEEEEeccCcccHhh
Confidence 01122222 3 567766 443 2335678888773333456688899998765443
No 445
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Probab=45.45 E-value=19 Score=37.14 Aligned_cols=23 Identities=35% Similarity=0.684 Sum_probs=20.2
Q ss_pred CceEEEeCcchHHHHHHHHHHHH
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~ 359 (623)
+.+|+|+|||.||+..|..|.+.
T Consensus 5 ~~~v~iiG~G~~Gl~aA~~l~~~ 27 (453)
T 2yg5_A 5 QRDVAIVGAGPSGLAAATALRKA 27 (453)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT
T ss_pred cCCEEEECCCHHHHHHHHHHHHC
Confidence 46899999999999999888764
No 446
>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=45.41 E-value=42 Score=33.38 Aligned_cols=50 Identities=16% Similarity=0.140 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCceEEEeC-cchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEcc
Q 040403 316 VAVAGLLGAVRAQGRSMIDFPKQKIVVAG-AGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDA 383 (623)
Q Consensus 316 V~lAgll~A~r~~g~~~~~l~d~riv~~G-AGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~ 383 (623)
+.++..+.+++..+.- -.+++++|.| +|..|..+++++... |. +++.+|+
T Consensus 123 ~~~~ta~~al~~~~~~---~~g~~vlV~Ga~ggiG~~~~~~a~~~-----G~----------~V~~~~~ 173 (327)
T 1qor_A 123 LKGLTVYYLLRKTYEI---KPDEQFLFHAAAGGVGLIACQWAKAL-----GA----------KLIGTVG 173 (327)
T ss_dssp HHHHHHHHHHHTTSCC---CTTCEEEESSTTBHHHHHHHHHHHHH-----TC----------EEEEEES
T ss_pred hHHHHHHHHHHHhhCC---CCCCEEEEECCCCHHHHHHHHHHHHc-----CC----------EEEEEeC
Confidence 3444555666533322 2578999999 588887777766553 72 5787776
No 447
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*
Probab=45.35 E-value=20 Score=37.95 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=27.2
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.+.+|+|+|||.+|+..|..|... | .++.++|+.
T Consensus 28 ~~~dv~IIGaG~aGl~aA~~l~~~-----g----------~~v~v~E~~ 61 (397)
T 3hdq_A 28 KGFDYLIVGAGFAGSVLAERLASS-----G----------QRVLIVDRR 61 (397)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHT-----T----------CCEEEECSS
T ss_pred CCCCEEEECccHHHHHHHHHHHHC-----C----------CceEEEecc
Confidence 457899999999999999887653 6 357788875
No 448
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=45.31 E-value=17 Score=40.38 Aligned_cols=34 Identities=24% Similarity=0.169 Sum_probs=27.9
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
...|+|+|||.||+..|-.|.+. | .++.++|+..
T Consensus 272 ~~DVvIIGgGiaGlsaA~~La~~-----G----------~~V~vlEk~~ 305 (676)
T 3ps9_A 272 KREAAIIGGGIASALLSLALLRR-----G----------WQVTLYCADE 305 (676)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT-----T----------CEEEEEESSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHC-----C----------CeEEEEeCCC
Confidence 46899999999999999887763 7 4688999853
No 449
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}
Probab=45.16 E-value=35 Score=34.38 Aligned_cols=45 Identities=18% Similarity=0.287 Sum_probs=30.2
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEcc
Q 040403 320 GLLGAVRAQGRSMIDFPKQKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDA 383 (623)
Q Consensus 320 gll~A~r~~g~~~~~l~d~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~ 383 (623)
..+.+++..+.+ .+++++|.|| |..|..+++++... | -+++.+|+
T Consensus 157 ta~~~l~~~~~~----~g~~vlV~Ga~ggiG~~~~~~a~~~-----G----------a~V~~~~~ 202 (347)
T 2hcy_A 157 TVYKALKSANLM----AGHWVAISGAAGGLGSLAVQYAKAM-----G----------YRVLGIDG 202 (347)
T ss_dssp HHHHHHHTTTCC----TTCEEEEETTTSHHHHHHHHHHHHT-----T----------CEEEEEEC
T ss_pred HHHHHHHhcCCC----CCCEEEEECCCchHHHHHHHHHHHC-----C----------CcEEEEcC
Confidence 345566555444 5789999999 77777777665542 6 25787775
No 450
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=45.15 E-value=15 Score=38.47 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=21.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCc
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNE 368 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~ 368 (623)
.+|||+|||-+|+..|-.|.++ |.+.
T Consensus 2 k~VvVIGaG~~GL~aA~~La~~-----G~~V 27 (501)
T 4dgk_A 2 KPTTVIGAGFGGLALAIRLQAA-----GIPV 27 (501)
T ss_dssp CCEEEECCHHHHHHHHHHHHHT-----TCCE
T ss_pred CCEEEECCcHHHHHHHHHHHHC-----CCcE
Confidence 3799999999999999887764 8754
No 451
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=45.02 E-value=14 Score=41.36 Aligned_cols=34 Identities=18% Similarity=0.164 Sum_probs=27.6
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
+..|+|+|||.||+.+|-.|.+. | .++.++|+..
T Consensus 264 ~~DVvIIGgGiaGlsaA~~La~~-----G----------~~V~vlEk~~ 297 (689)
T 3pvc_A 264 CDDIAIIGGGIVSALTALALQRR-----G----------AVVTLYCADA 297 (689)
T ss_dssp CSSEEEECCSHHHHHHHHHHHTT-----T----------CCEEEEESSS
T ss_pred CCCEEEECCcHHHHHHHHHHHHC-----C----------CcEEEEeCCC
Confidence 46899999999999999887663 7 3588888853
No 452
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=45.01 E-value=19 Score=37.69 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=27.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
+|||+|||.||+..|..+.+. +- -.++.++|+..
T Consensus 2 dvvIIGgG~aGl~aA~~l~~~-----~~--------g~~V~lie~~~ 35 (452)
T 2cdu_A 2 KVIVVGCTHAGTFAVKQTIAD-----HP--------DADVTAYEMND 35 (452)
T ss_dssp EEEEECCSHHHHHHHHHHHHH-----CT--------TCEEEEEESSS
T ss_pred eEEEECCCHHHHHHHHHHHhh-----Cc--------CCcEEEEECCC
Confidence 699999999999999988764 20 15789999864
No 453
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Probab=44.93 E-value=51 Score=31.20 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=24.8
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+++.++||.||.. ||...++..+.++ | -+++++|++
T Consensus 10 ~~~k~vlVTGasg---giG~~~a~~l~~~-G----------~~V~~~~r~ 45 (265)
T 2o23_A 10 VKGLVAVITGGAS---GLGLATAERLVGQ-G----------ASAVLLDLP 45 (265)
T ss_dssp CTTCEEEEETTTS---HHHHHHHHHHHHT-T----------CEEEEEECT
T ss_pred CCCCEEEEECCCC---hHHHHHHHHHHHC-C----------CEEEEEeCC
Confidence 7889999999842 4555555555555 7 358888774
No 454
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Probab=44.92 E-value=16 Score=39.27 Aligned_cols=28 Identities=29% Similarity=0.485 Sum_probs=23.6
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCc
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNE 368 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~ 368 (623)
.+..|+|+|||.+|+..|-.|... |++.
T Consensus 10 ~~~dVlIVGaGpaGl~~A~~La~~-----G~~v 37 (500)
T 2qa1_A 10 SDAAVIVVGAGPAGMMLAGELRLA-----GVEV 37 (500)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHHT-----TCCE
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC-----CCCE
Confidence 578899999999999999888764 8653
No 455
>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}
Probab=44.91 E-value=65 Score=31.47 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=24.7
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
|+++++||.||++ ||...++..+.++ | -+++++|++
T Consensus 31 l~gk~~lVTGas~---GIG~aia~~la~~-G----------~~V~~~~r~ 66 (275)
T 4imr_A 31 LRGRTALVTGSSR---GIGAAIAEGLAGA-G----------AHVILHGVK 66 (275)
T ss_dssp CTTCEEEETTCSS---HHHHHHHHHHHHT-T----------CEEEEEESS
T ss_pred CCCCEEEEECCCC---HHHHHHHHHHHHC-C----------CEEEEEcCC
Confidence 7889999999853 4444555555555 7 368888873
No 456
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}
Probab=44.82 E-value=98 Score=30.21 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=26.0
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 334 DFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 334 ~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
++++.++||.||++ ||...|+..+.++ | -+++++|++
T Consensus 6 ~l~~k~vlVTGas~---GIG~aia~~l~~~-G----------~~V~~~~r~ 42 (285)
T 3sc4_A 6 SLRGKTMFISGGSR---GIGLAIAKRVAAD-G----------ANVALVAKS 42 (285)
T ss_dssp CCTTCEEEEESCSS---HHHHHHHHHHHTT-T----------CEEEEEESC
T ss_pred CCCCCEEEEECCCC---HHHHHHHHHHHHC-C----------CEEEEEECC
Confidence 37889999999864 4555555555555 7 368888885
No 457
>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*
Probab=44.79 E-value=37 Score=33.85 Aligned_cols=53 Identities=17% Similarity=0.094 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEcc
Q 040403 313 TAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDA 383 (623)
Q Consensus 313 TaaV~lAgll~A~r~~g~~~~~l~d~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~ 383 (623)
+-...++..+.++.-.+.. -.+++++|.|| |..|..+++++... | -+++.+|+
T Consensus 125 ~l~~~~~ta~~al~~~~~~---~~g~~vlV~Ga~ggiG~~~~~~~~~~-----G----------~~V~~~~~ 178 (333)
T 1v3u_A 125 TIGMPGLTAYFGLLEVCGV---KGGETVLVSAAAGAVGSVVGQIAKLK-----G----------CKVVGAAG 178 (333)
T ss_dssp TTSHHHHHHHHHHHTTSCC---CSSCEEEEESTTBHHHHHHHHHHHHT-----T----------CEEEEEES
T ss_pred HhCChHHHHHHHHHHhhCC---CCCCEEEEecCCCcHHHHHHHHHHHC-----C----------CEEEEEeC
Confidence 3334455555666333333 36789999998 87777777666542 7 25787776
No 458
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=44.73 E-value=19 Score=37.55 Aligned_cols=35 Identities=11% Similarity=0.219 Sum_probs=27.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCc
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGL 386 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GL 386 (623)
+|||+|||.||+..|..+.+. +- -.++.++|+...
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~-----~~--------g~~V~lie~~~~ 36 (447)
T 1nhp_A 2 KVIVLGSSHGGYEAVEELLNL-----HP--------DAEIQWYEKGDF 36 (447)
T ss_dssp EEEEECSSHHHHHHHHHHHHH-----CT--------TSEEEEEESSSS
T ss_pred eEEEECCCHHHHHHHHHHHHh-----Cc--------CCeEEEEECCCc
Confidence 699999999999999988763 21 157899998643
No 459
>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}
Probab=44.72 E-value=18 Score=36.40 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=24.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEcc
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDA 383 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~ 383 (623)
+||-|+|-|..|.++|..|++. |. +++.+|+
T Consensus 6 ~kIgfIGLG~MG~~mA~~L~~~-----G~----------~V~v~dr 36 (297)
T 4gbj_A 6 EKIAFLGLGNLGTPIAEILLEA-----GY----------ELVVWNR 36 (297)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT-----TC----------EEEEC--
T ss_pred CcEEEEecHHHHHHHHHHHHHC-----CC----------eEEEEeC
Confidence 5899999999999999999875 74 4677776
No 460
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=44.70 E-value=23 Score=33.18 Aligned_cols=76 Identities=13% Similarity=0.163 Sum_probs=42.5
Q ss_pred CCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhh-hhccc
Q 040403 334 DFPKQKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVN-EISRQ 411 (623)
Q Consensus 334 ~l~d~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~-~~~~~ 411 (623)
+|++.+|+|.|| |-.|..+++.|++. | -++++++++. +....+....- .+-.
T Consensus 18 ~l~~~~ilVtGatG~iG~~l~~~L~~~-----G----------~~V~~~~R~~----------~~~~~~~~~~~~~~~~- 71 (236)
T 3e8x_A 18 YFQGMRVLVVGANGKVARYLLSELKNK-----G----------HEPVAMVRNE----------EQGPELRERGASDIVV- 71 (236)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHT-----T----------CEEEEEESSG----------GGHHHHHHTTCSEEEE-
T ss_pred CcCCCeEEEECCCChHHHHHHHHHHhC-----C----------CeEEEEECCh----------HHHHHHHhCCCceEEE-
Confidence 488999999998 77777777777653 7 3688887741 01111211111 1000
Q ss_pred ccCCCCCHHHHHhhcCCcEEEeccCCC
Q 040403 412 GLWEGASLVEVVQQVKPDVLLGLSAVG 438 (623)
Q Consensus 412 ~~~~~~~L~e~V~~vkptvLIG~S~~~ 438 (623)
..-..++.++++ ++|++|=+.+..
T Consensus 72 -~Dl~~~~~~~~~--~~D~vi~~ag~~ 95 (236)
T 3e8x_A 72 -ANLEEDFSHAFA--SIDAVVFAAGSG 95 (236)
T ss_dssp -CCTTSCCGGGGT--TCSEEEECCCCC
T ss_pred -cccHHHHHHHHc--CCCEEEECCCCC
Confidence 011145677777 899999776543
No 461
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=44.53 E-value=38 Score=34.76 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=22.1
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHH
Q 040403 319 AGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAA 356 (623)
Q Consensus 319 Agll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll 356 (623)
...+.+++..+.+ .+++|+|+|||..|...+++.
T Consensus 181 ~tA~~al~~~~~~----~g~~VlV~GaG~vG~~aiqla 214 (369)
T 1uuf_A 181 ITTYSPLRHWQAG----PGKKVGVVGIGGLGHMGIKLA 214 (369)
T ss_dssp HHHHHHHHHTTCC----TTCEEEEECCSHHHHHHHHHH
T ss_pred HHHHHHHHhcCCC----CCCEEEEECCCHHHHHHHHHH
Confidence 3345566655544 578999999987665555444
No 462
>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A
Probab=44.50 E-value=23 Score=34.39 Aligned_cols=102 Identities=14% Similarity=0.085 Sum_probs=55.7
Q ss_pred CceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCC
Q 040403 337 KQKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWE 415 (623)
Q Consensus 337 d~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~ 415 (623)
..+|+|.|| |..|..+++.|++. | ..+++.++++. . ......+....-++-.....+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~-----g---------~~~V~~~~R~~------~--~~~~~~l~~~~~~~~~~D~~d 62 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLED-----G---------TFKVRVVTRNP------R--KKAAKELRLQGAEVVQGDQDD 62 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHH-----C---------SSEEEEEESCT------T--SHHHHHHHHTTCEEEECCTTC
T ss_pred CCEEEEECCCchHHHHHHHHHHhc-----C---------CceEEEEEcCC------C--CHHHHHHHHCCCEEEEecCCC
Confidence 468999998 88888887777663 5 13577777641 0 000111211100100000112
Q ss_pred CCCHHHHHhhcCCcEEEeccCCCCC--------CCHHHHHHcccCCCCCCEEEecCC
Q 040403 416 GASLVEVVQQVKPDVLLGLSAVGGL--------FSKEVLEAMRGSTSTRPAIFAMSN 464 (623)
Q Consensus 416 ~~~L~e~V~~vkptvLIG~S~~~g~--------Ft~evv~~M~a~~~erPIIFaLSN 464 (623)
..+|.++++ ++|++|-+++.... .++.++++| .+..-+-||| .|-
T Consensus 63 ~~~l~~~~~--~~d~vi~~a~~~~~~~~~~~~~~~~~~~~aa-~~~gv~~iv~-~S~ 115 (299)
T 2wm3_A 63 QVIMELALN--GAYATFIVTNYWESCSQEQEVKQGKLLADLA-RRLGLHYVVY-SGL 115 (299)
T ss_dssp HHHHHHHHT--TCSEEEECCCHHHHTCHHHHHHHHHHHHHHH-HHHTCSEEEE-CCC
T ss_pred HHHHHHHHh--cCCEEEEeCCCCccccchHHHHHHHHHHHHH-HHcCCCEEEE-EcC
Confidence 235777888 78999987653111 245678888 4444456887 554
No 463
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*
Probab=44.40 E-value=25 Score=37.49 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=28.4
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
..+|+|+|+|.||+..|..|... |- ..+|.++|+.
T Consensus 6 ~~~vvIIG~G~aGl~aA~~l~~~-----g~--------~~~V~vie~~ 40 (460)
T 1cjc_A 6 TPQICVVGSGPAGFYTAQHLLKH-----HS--------RAHVDIYEKQ 40 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH-----CS--------SCEEEEECSS
T ss_pred CceEEEECcCHHHHHHHHHHHhc-----CC--------CCCEEEEeCC
Confidence 46899999999999999998764 51 1478899876
No 464
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=44.26 E-value=18 Score=38.59 Aligned_cols=36 Identities=31% Similarity=0.446 Sum_probs=27.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
.+|||+|||.||+..|..+.+.- .+ | .++.++|+..
T Consensus 3 ~dVvIIGgG~aGl~aA~~l~~~~-~~-G----------~~V~liE~~~ 38 (499)
T 1xdi_A 3 TRIVILGGGPAGYEAALVAATSH-PE-T----------TQVTVIDCDG 38 (499)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHC-TT-T----------EEEEEEESSC
T ss_pred CCEEEECCCHHHHHHHHHHHhCC-CC-c----------CEEEEEeCCC
Confidence 57999999999999998887630 00 3 3699999874
No 465
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=44.21 E-value=17 Score=40.53 Aligned_cols=35 Identities=37% Similarity=0.514 Sum_probs=28.3
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
...+|||+|+|.||+..|..+... | .++.++|+..
T Consensus 372 ~~~~vvIIGgG~AGl~aA~~l~~~-----g----------~~V~lie~~~ 406 (671)
T 1ps9_A 372 QKKNLAVVGAGPAGLAFAINAAAR-----G----------HQVTLFDAHS 406 (671)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTT-----T----------CEEEEEESSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHhC-----C----------CeEEEEeCCC
Confidence 357899999999999998888652 6 3688999864
No 466
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}
Probab=44.20 E-value=1.4e+02 Score=30.44 Aligned_cols=86 Identities=14% Similarity=0.282 Sum_probs=47.4
Q ss_pred CCceEEEeC-cchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccC
Q 040403 336 PKQKIVVAG-AGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLW 414 (623)
Q Consensus 336 ~d~riv~~G-AGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~ 414 (623)
.+++|+|.| +|..|...+++.... .| .+++.+|+. +.+..+++.-.- .....
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~----~g----------~~Vi~~~~~-----------~~~~~~~~~lGa--d~vi~ 223 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQR----TD----------LTVIATASR-----------PETQEWVKSLGA--HHVID 223 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHH----CC----------SEEEEECSS-----------HHHHHHHHHTTC--SEEEC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHh----cC----------CEEEEEeCC-----------HHHHHHHHHcCC--CEEEe
Confidence 578999999 788886665544331 14 468888763 455666643100 00001
Q ss_pred CCCCHHHHHhhc---CCcEEEeccCCCCCCCHHHHHHc
Q 040403 415 EGASLVEVVQQV---KPDVLLGLSAVGGLFSKEVLEAM 449 (623)
Q Consensus 415 ~~~~L~e~V~~v---kptvLIG~S~~~g~Ft~evv~~M 449 (623)
...++.+.++.. +.|++|-+++.+..| ++.++.+
T Consensus 224 ~~~~~~~~v~~~~~~g~Dvvid~~g~~~~~-~~~~~~l 260 (363)
T 4dvj_A 224 HSKPLAAEVAALGLGAPAFVFSTTHTDKHA-AEIADLI 260 (363)
T ss_dssp TTSCHHHHHHTTCSCCEEEEEECSCHHHHH-HHHHHHS
T ss_pred CCCCHHHHHHHhcCCCceEEEECCCchhhH-HHHHHHh
Confidence 123566666654 578888776532122 4445555
No 467
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=44.17 E-value=30 Score=34.89 Aligned_cols=82 Identities=9% Similarity=0.047 Sum_probs=47.6
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhccccc-C
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGL-W 414 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~-~ 414 (623)
+..||.|+|+|..|...++.|.. ..+. +-+.++|++ .+..+.+++.- . . .
T Consensus 4 ~~~~igiiG~G~~g~~~~~~l~~----~~~~---------~l~av~d~~----------~~~~~~~~~~~-~-----~~~ 54 (330)
T 3e9m_A 4 DKIRYGIMSTAQIVPRFVAGLRE----SAQA---------EVRGIASRR----------LENAQKMAKEL-A-----IPV 54 (330)
T ss_dssp CCEEEEECSCCTTHHHHHHHHHH----SSSE---------EEEEEBCSS----------SHHHHHHHHHT-T-----CCC
T ss_pred CeEEEEEECchHHHHHHHHHHHh----CCCc---------EEEEEEeCC----------HHHHHHHHHHc-C-----CCc
Confidence 45799999999988776655533 1121 123356663 22234555321 1 2 2
Q ss_pred CCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHH
Q 040403 415 EGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEA 448 (623)
Q Consensus 415 ~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 448 (623)
...++.|+++.-++|+++ +++.+ ....++++.
T Consensus 55 ~~~~~~~ll~~~~~D~V~-i~tp~-~~h~~~~~~ 86 (330)
T 3e9m_A 55 AYGSYEELCKDETIDIIY-IPTYN-QGHYSAAKL 86 (330)
T ss_dssp CBSSHHHHHHCTTCSEEE-ECCCG-GGHHHHHHH
T ss_pred eeCCHHHHhcCCCCCEEE-EcCCC-HHHHHHHHH
Confidence 467899999877889887 44333 344454443
No 468
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*
Probab=44.10 E-value=19 Score=37.89 Aligned_cols=37 Identities=14% Similarity=0.195 Sum_probs=29.4
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcc
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLI 387 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi 387 (623)
.+.+|+|+|||-+|+..|-.|..+ | .++.++|++.-+
T Consensus 10 ~~~dvvVIGaG~~GL~aA~~La~~-----G----------~~V~vlE~~~~~ 46 (453)
T 2bcg_G 10 TDYDVIVLGTGITECILSGLLSVD-----G----------KKVLHIDKQDHY 46 (453)
T ss_dssp CBCSEEEECCSHHHHHHHHHHHHT-----T----------CCEEEECSSSSS
T ss_pred ccCCEEEECcCHHHHHHHHHHHHC-----C----------CeEEEEeCCCCC
Confidence 346899999999999998888764 7 468888887543
No 469
>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}
Probab=43.89 E-value=17 Score=39.07 Aligned_cols=33 Identities=21% Similarity=0.342 Sum_probs=26.6
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
-.+|.|+|+|..|.+||..+..+ |. +++++|++
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~-----G~----------~V~l~D~~ 69 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARV-----GI----------SVVAVESD 69 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT-----TC----------EEEEECSS
T ss_pred CCEEEEECcCHHHHHHHHHHHhC-----CC----------eEEEEECC
Confidence 35899999999999999988764 73 47777763
No 470
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}
Probab=43.88 E-value=18 Score=38.87 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=20.7
Q ss_pred CceEEEeCcchHHHHHHHHHHHHH
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTM 360 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m 360 (623)
..+|||+|||.||.-.|-.|...+
T Consensus 7 ~~dVvIVGgG~aGl~aA~~La~~~ 30 (526)
T 2pyx_A 7 ITEIIIVGGGTAGWITAGLLAAEH 30 (526)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhhh
Confidence 468999999999999999888743
No 471
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Probab=43.85 E-value=61 Score=32.52 Aligned_cols=79 Identities=22% Similarity=0.379 Sum_probs=49.3
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCC
Q 040403 339 KIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGA 417 (623)
Q Consensus 339 riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~ 417 (623)
||+|.|| |-.|-.+++.|++. |- -+++.+|+. . + . .
T Consensus 2 ~VlVtGatG~iG~~l~~~L~~~-----g~---------~~v~~~d~~-------~--d-----------~---------~ 38 (369)
T 3st7_A 2 NIVITGAKGFVGKNLKADLTST-----TD---------HHIFEVHRQ-------T--K-----------E---------E 38 (369)
T ss_dssp EEEEETTTSHHHHHHHHHHHHH-----CC---------CEEEECCTT-------C--C-----------H---------H
T ss_pred EEEEECCCCHHHHHHHHHHHhC-----CC---------CEEEEECCC-------C--C-----------H---------H
Confidence 7999995 78887787777664 62 257777764 0 0 0 1
Q ss_pred CHHHHHhhcCCcEEEeccCCCCC------------CCHHHHHHcccCCCCC-CEEEecC
Q 040403 418 SLVEVVQQVKPDVLLGLSAVGGL------------FSKEVLEAMRGSTSTR-PAIFAMS 463 (623)
Q Consensus 418 ~L~e~V~~vkptvLIG~S~~~g~------------Ft~evv~~M~a~~~er-PIIFaLS 463 (623)
+|.++++ ++|++|=+.+..+. .+..+++++ .+..-+ .+||.=|
T Consensus 39 ~l~~~~~--~~d~Vih~a~~~~~~~~~~~~~~n~~~~~~l~~a~-~~~~~~~~~v~~Ss 94 (369)
T 3st7_A 39 ELESALL--KADFIVHLAGVNRPEHDKEFSLGNVSYLDHVLDIL-TRNTKKPAILLSSS 94 (369)
T ss_dssp HHHHHHH--HCSEEEECCCSBCTTCSTTCSSSCCBHHHHHHHHH-TTCSSCCEEEEEEE
T ss_pred HHHHHhc--cCCEEEECCcCCCCCCHHHHHHHHHHHHHHHHHHH-HHhCCCCeEEEeCc
Confidence 2566666 68888866543211 246788888 444433 6877544
No 472
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1
Probab=43.83 E-value=27 Score=35.94 Aligned_cols=49 Identities=27% Similarity=0.285 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhC-CCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEcc
Q 040403 317 AVAGLLGAVRAQG-RSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDA 383 (623)
Q Consensus 317 ~lAgll~A~r~~g-~~~~~l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~ 383 (623)
.++..+.|++..+ .+ .+++|+|.|+|..|...+++... .|. .+++.+|+
T Consensus 179 ~~~ta~~al~~~~~~~----~g~~VlV~GaG~vG~~aiqlak~-----~Ga---------~~Vi~~~~ 228 (380)
T 1vj0_A 179 SGATAYHAFDEYPESF----AGKTVVIQGAGPLGLFGVVIARS-----LGA---------ENVIVIAG 228 (380)
T ss_dssp HHHHHHHHHHTCSSCC----BTCEEEEECCSHHHHHHHHHHHH-----TTB---------SEEEEEES
T ss_pred HHHHHHHHHHhcCCCC----CCCEEEEECcCHHHHHHHHHHHH-----cCC---------ceEEEEcC
Confidence 4445556666554 33 57899999998877666555443 262 46888875
No 473
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*
Probab=43.82 E-value=20 Score=35.69 Aligned_cols=38 Identities=21% Similarity=0.197 Sum_probs=27.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCC
Q 040403 339 KIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKG 385 (623)
Q Consensus 339 riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~G 385 (623)
.|+|+|||.+|+.+|-.|.+. |.+. --..++.++|+.-
T Consensus 2 dVvIIGgGi~Gls~A~~La~~-----G~~~----~p~~~V~vlE~~~ 39 (351)
T 3g3e_A 2 RVVVIGAGVIGLSTALCIHER-----YHSV----LQPLDIKVYADRF 39 (351)
T ss_dssp EEEEECCSHHHHHHHHHHHHH-----HTTT----SSSCEEEEEESSC
T ss_pred cEEEECCCHHHHHHHHHHHHh-----cccc----CCCceEEEEECCC
Confidence 689999999999999888764 5110 0014688999873
No 474
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=43.80 E-value=31 Score=35.87 Aligned_cols=35 Identities=20% Similarity=0.344 Sum_probs=27.2
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
..+|+|+|||-+|+..|..|.+. |- ..++.++++.
T Consensus 4 ~~~v~IiGaG~~Gl~~A~~L~~~-----g~--------~~~v~v~E~~ 38 (475)
T 3lov_A 4 SKRLVIVGGGITGLAAAYYAERA-----FP--------DLNITLLEAG 38 (475)
T ss_dssp SCEEEEECCBHHHHHHHHHHHHH-----CT--------TSEEEEECSS
T ss_pred cccEEEECCCHHHHHHHHHHHHh-----CC--------CCCEEEEECC
Confidence 46899999999999999988875 61 1356677764
No 475
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=43.52 E-value=31 Score=34.08 Aligned_cols=105 Identities=15% Similarity=0.150 Sum_probs=57.9
Q ss_pred CCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHH-------Hhh
Q 040403 335 FPKQKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFAR-------KVN 406 (623)
Q Consensus 335 l~d~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~-------~~~ 406 (623)
+...+|+|.|| |-.|..+++.|++. | .+++.+|+..- ........+.. ..-
T Consensus 23 ~~~~~vlVtGatG~iG~~l~~~L~~~-----g----------~~V~~~~r~~~------~~~~~~~~~~~~~~~~~~~~~ 81 (351)
T 3ruf_A 23 FSPKTWLITGVAGFIGSNLLEKLLKL-----N----------QVVIGLDNFST------GHQYNLDEVKTLVSTEQWSRF 81 (351)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHT-----T----------CEEEEEECCSS------CCHHHHHHHHHTSCHHHHTTE
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHC-----C----------CEEEEEeCCCC------CchhhhhhhhhccccccCCce
Confidence 45679999997 77787777777653 6 35777777421 01111111110 000
Q ss_pred hhcccccCCCCCHHHHHhhcCCcEEEeccCCCCC----------------CCHHHHHHcccCCCCCCEEEecC
Q 040403 407 EISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGL----------------FSKEVLEAMRGSTSTRPAIFAMS 463 (623)
Q Consensus 407 ~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~----------------Ft~evv~~M~a~~~erPIIFaLS 463 (623)
.+-........++.++++ ++|++|=+.+..+. -|..+++++ .+..-+.+||.=|
T Consensus 82 ~~~~~Dl~d~~~~~~~~~--~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~-~~~~~~~~v~~SS 151 (351)
T 3ruf_A 82 CFIEGDIRDLTTCEQVMK--GVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAA-KNAQVQSFTYAAS 151 (351)
T ss_dssp EEEECCTTCHHHHHHHTT--TCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHH-HHTTCSEEEEEEE
T ss_pred EEEEccCCCHHHHHHHhc--CCCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHH-HHcCCCEEEEEec
Confidence 000000112234677787 89999988764321 134478888 5555567888643
No 476
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*
Probab=43.45 E-value=31 Score=34.77 Aligned_cols=88 Identities=22% Similarity=0.228 Sum_probs=48.9
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccC
Q 040403 335 FPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLW 414 (623)
Q Consensus 335 l~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~ 414 (623)
+.+++|+|+|||..|..++++... .|. ++++.+|+. +.+..+++.-.- ..-...
T Consensus 166 ~~g~~VlV~GaG~vG~~~~q~a~~-----~Ga---------~~Vi~~~~~-----------~~~~~~~~~~Ga-~~~~~~ 219 (348)
T 2d8a_A 166 ISGKSVLITGAGPLGLLGIAVAKA-----SGA---------YPVIVSEPS-----------DFRRELAKKVGA-DYVINP 219 (348)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHH-----TTC---------CSEEEECSC-----------HHHHHHHHHHTC-SEEECT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----cCC---------CEEEEECCC-----------HHHHHHHHHhCC-CEEECC
Confidence 367899999998877777665544 274 357877762 445556643110 000011
Q ss_pred CCCCHHHHHhhc----CCcEEEeccCCCCCCCHHHHHHc
Q 040403 415 EGASLVEVVQQV----KPDVLLGLSAVGGLFSKEVLEAM 449 (623)
Q Consensus 415 ~~~~L~e~V~~v----kptvLIG~S~~~g~Ft~evv~~M 449 (623)
...++.+.++.. +.|++|=+++.+ ...++.++.|
T Consensus 220 ~~~~~~~~v~~~~~g~g~D~vid~~g~~-~~~~~~~~~l 257 (348)
T 2d8a_A 220 FEEDVVKEVMDITDGNGVDVFLEFSGAP-KALEQGLQAV 257 (348)
T ss_dssp TTSCHHHHHHHHTTTSCEEEEEECSCCH-HHHHHHHHHE
T ss_pred CCcCHHHHHHHHcCCCCCCEEEECCCCH-HHHHHHHHHH
Confidence 223566666543 578888776521 2224455555
No 477
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Probab=43.40 E-value=41 Score=34.24 Aligned_cols=75 Identities=20% Similarity=0.230 Sum_probs=42.5
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhh-h-hccccc
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVN-E-ISRQGL 413 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~-~-~~~~~~ 413 (623)
.+++|+|+|||..|...+++... .|. ++++.+|+. +.+..+++.-. + .-+. .
T Consensus 191 ~g~~VlV~GaG~vG~~a~qla~~-----~Ga---------~~Vi~~~~~-----------~~~~~~~~~lGa~~vi~~-~ 244 (374)
T 2jhf_A 191 QGSTCAVFGLGGVGLSVIMGCKA-----AGA---------ARIIGVDIN-----------KDKFAKAKEVGATECVNP-Q 244 (374)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH-----TTC---------SEEEEECSC-----------GGGHHHHHHTTCSEEECG-G
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-----cCC---------CeEEEEcCC-----------HHHHHHHHHhCCceEecc-c
Confidence 57899999998777666555443 273 468888762 34455654210 0 0000 0
Q ss_pred CCCCCHHHHHhhc---CCcEEEeccC
Q 040403 414 WEGASLVEVVQQV---KPDVLLGLSA 436 (623)
Q Consensus 414 ~~~~~L~e~V~~v---kptvLIG~S~ 436 (623)
....++.+.++.. +.|++|=+++
T Consensus 245 ~~~~~~~~~~~~~~~~g~D~vid~~g 270 (374)
T 2jhf_A 245 DYKKPIQEVLTEMSNGGVDFSFEVIG 270 (374)
T ss_dssp GCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred ccchhHHHHHHHHhCCCCcEEEECCC
Confidence 0013466666543 5788887764
No 478
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=43.26 E-value=16 Score=36.65 Aligned_cols=98 Identities=15% Similarity=0.167 Sum_probs=57.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhc------cc
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEIS------RQ 411 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~------~~ 411 (623)
.||.|+|||+-|..+|..|... | .+++++|+.-+ ..+.+..-... .|
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~-----g----------~~V~~~~r~~~------------~~i~~~g~~~~~~~g~~~~ 55 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRS-----G----------EDVHFLLRRDY------------EAIAGNGLKVFSINGDFTL 55 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHT-----S----------CCEEEECSTTH------------HHHHHTCEEEEETTCCEEE
T ss_pred CEEEEECcCHHHHHHHHHHHHC-----C----------CeEEEEEcCcH------------HHHHhCCCEEEcCCCeEEE
Confidence 5899999999999999888764 6 35777777421 11110000000 00
Q ss_pred -ccCCCCCHHHHHhhcCCcEEEeccCCCCCCCHHHHHHcccCCCCCCEEEecCCCCC
Q 040403 412 -GLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTN 467 (623)
Q Consensus 412 -~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~ 467 (623)
+.....++.+ ++ .+|++| ++. +--.++++++.++....+..+|..+.|--.
T Consensus 56 ~~~~~~~~~~~-~~--~~D~vi-lav-k~~~~~~~l~~l~~~l~~~~~iv~l~nGi~ 107 (312)
T 3hn2_A 56 PHVKGYRAPEE-IG--PMDLVL-VGL-KTFANSRYEELIRPLVEEGTQILTLQNGLG 107 (312)
T ss_dssp SCCCEESCHHH-HC--CCSEEE-ECC-CGGGGGGHHHHHGGGCCTTCEEEECCSSSS
T ss_pred eeceeecCHHH-cC--CCCEEE-Eec-CCCCcHHHHHHHHhhcCCCCEEEEecCCCC
Confidence 0011234443 44 678777 553 333467888888444566778888999764
No 479
>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*
Probab=43.16 E-value=38 Score=34.30 Aligned_cols=62 Identities=23% Similarity=0.286 Sum_probs=40.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGA 417 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~ 417 (623)
+||-|+|-|..|.++|+.|+.+ |. +++.+|+. ++-..+++.. +.....
T Consensus 4 ~kIgfIGlG~MG~~mA~~L~~~-----G~----------~v~v~dr~----------~~~~~~l~~~-------Ga~~a~ 51 (300)
T 3obb_A 4 KQIAFIGLGHMGAPMATNLLKA-----GY----------LLNVFDLV----------QSAVDGLVAA-------GASAAR 51 (300)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT-----TC----------EEEEECSS----------HHHHHHHHHT-------TCEECS
T ss_pred CEEEEeeehHHHHHHHHHHHhC-----CC----------eEEEEcCC----------HHHHHHHHHc-------CCEEcC
Confidence 4899999999999999999875 73 46677763 1112233211 122356
Q ss_pred CHHHHHhhcCCcEEEe
Q 040403 418 SLVEVVQQVKPDVLLG 433 (623)
Q Consensus 418 ~L~e~V~~vkptvLIG 433 (623)
|+.|+++ +.|++|=
T Consensus 52 s~~e~~~--~~dvv~~ 65 (300)
T 3obb_A 52 SARDAVQ--GADVVIS 65 (300)
T ss_dssp SHHHHHT--TCSEEEE
T ss_pred CHHHHHh--cCCceee
Confidence 6777777 6666664
No 480
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=43.15 E-value=19 Score=39.26 Aligned_cols=33 Identities=33% Similarity=0.420 Sum_probs=26.9
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEcc
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDA 383 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~ 383 (623)
...+|+|+|||.||+..|..+.+. |. ++.++|+
T Consensus 106 ~~~dvvVIG~GpAGl~aA~~l~~~-----g~----------~v~liE~ 138 (598)
T 2x8g_A 106 YDYDLIVIGGGSGGLAAGKEAAKY-----GA----------KTAVLDY 138 (598)
T ss_dssp SSEEEEEECCSHHHHHHHHHHHHT-----TC----------CEEEECC
T ss_pred ccccEEEECCCccHHHHHHHHHhC-----CC----------eEEEEec
Confidence 357999999999999999888764 73 5778885
No 481
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=43.11 E-value=16 Score=37.99 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=19.4
Q ss_pred CceEEEeCcchHHHHHHHHHHHH
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~ 359 (623)
..+|+|+|||.+|+..|..|.+.
T Consensus 16 ~~~v~iiG~G~~Gl~aa~~l~~~ 38 (478)
T 2ivd_A 16 GMNVAVVGGGISGLAVAHHLRSR 38 (478)
T ss_dssp -CCEEEECCBHHHHHHHHHHHTT
T ss_pred CCcEEEECCCHHHHHHHHHHHHC
Confidence 46899999999999999888764
No 482
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=43.01 E-value=11 Score=39.55 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=18.4
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 040403 338 QKIVVAGAGSAGLGVLNAARK 358 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~ 358 (623)
.+|+|+|||.||+..|..|..
T Consensus 7 ~dVvIVGaG~aGl~aA~~La~ 27 (453)
T 3atr_A 7 YDVLIIGGGFAGSSAAYQLSR 27 (453)
T ss_dssp CSEEEECCSHHHHHHHHHHSS
T ss_pred CCEEEECcCHHHHHHHHHHHH
Confidence 579999999999999888765
No 483
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7
Probab=42.56 E-value=17 Score=37.32 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=18.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 040403 338 QKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~ 359 (623)
.+|+|+|||.+|+..|..|.+.
T Consensus 2 ~~v~iiG~G~~Gl~~A~~l~~~ 23 (367)
T 1i8t_A 2 YDYIIVGSGLFGAVCANELKKL 23 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHGGG
T ss_pred CCEEEECcCHHHHHHHHHHHhC
Confidence 4799999999999998887653
No 484
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=42.41 E-value=17 Score=42.94 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=28.2
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
+.+|+|+|+|.||+..|..|... |. +++.++|++
T Consensus 187 ~~~VvVIGgGpAGl~aA~~L~~~-----G~---------~~Vtv~E~~ 220 (1025)
T 1gte_A 187 SAKIALLGAGPASISCASFLARL-----GY---------SDITIFEKQ 220 (1025)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHT-----TC---------CCEEEEESS
T ss_pred CCEEEEECccHHHHHHHHHHHhc-----CC---------CcEEEEeCC
Confidence 56899999999999999998764 73 258889886
No 485
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=42.31 E-value=21 Score=36.24 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=18.9
Q ss_pred ceEEEeCcchHHH-HHHHHHHHH
Q 040403 338 QKIVVAGAGSAGL-GVLNAARKT 359 (623)
Q Consensus 338 ~riv~~GAGsAg~-GIA~ll~~~ 359 (623)
+||.|+|.|.+|+ ++|+++.+.
T Consensus 5 ~~i~~iGiGg~Gms~~A~~L~~~ 27 (326)
T 3eag_A 5 KHIHIIGIGGTFMGGLAAIAKEA 27 (326)
T ss_dssp CEEEEESCCSHHHHHHHHHHHHT
T ss_pred cEEEEEEECHHHHHHHHHHHHhC
Confidence 6899999999999 588887764
No 486
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=42.09 E-value=27 Score=40.18 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=21.0
Q ss_pred CCceEEEeCcchHHHHHHHHHHHH
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~ 359 (623)
.+.+|+|+|||.||+..|..|...
T Consensus 335 ~~~~v~viG~G~~Gl~aA~~l~~~ 358 (776)
T 4gut_A 335 HNKSVIIIGAGPAGLAAARQLHNF 358 (776)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC
Confidence 457999999999999999888775
No 487
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=42.08 E-value=18 Score=38.69 Aligned_cols=32 Identities=25% Similarity=0.567 Sum_probs=26.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 338 QKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 338 ~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
..|+|+|||.||+..|..+.+. | .++.++|+.
T Consensus 9 ~DvvVIGgG~aGl~aA~~la~~-----G----------~~V~liE~~ 40 (492)
T 3ic9_A 9 VDVAIIGTGTAGMGAYRAAKKH-----T----------DKVVLIEGG 40 (492)
T ss_dssp EEEEEECCSHHHHHHHHHHHTT-----C----------SCEEEEESS
T ss_pred CCEEEECCCHHHHHHHHHHHhC-----C----------CcEEEEeCC
Confidence 5799999999999998877653 6 357888875
No 488
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1
Probab=42.01 E-value=45 Score=33.98 Aligned_cols=74 Identities=20% Similarity=0.298 Sum_probs=42.5
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhh-h-hccccc
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVN-E-ISRQGL 413 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~-~-~~~~~~ 413 (623)
.+++|+|+|||..|...+++... .|. ++++.+|+. +.+..+++.-. + .-+ .
T Consensus 192 ~g~~VlV~GaG~vG~~a~qla~~-----~Ga---------~~Vi~~~~~-----------~~~~~~~~~lGa~~vi~--~ 244 (374)
T 1cdo_A 192 PGSTCAVFGLGAVGLAAVMGCHS-----AGA---------KRIIAVDLN-----------PDKFEKAKVFGATDFVN--P 244 (374)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH-----TTC---------SEEEEECSC-----------GGGHHHHHHTTCCEEEC--G
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-----cCC---------CEEEEEcCC-----------HHHHHHHHHhCCceEEe--c
Confidence 57899999998777666554443 273 468888752 34555664210 0 000 0
Q ss_pred CC-CCCHHHHHhhc---CCcEEEeccC
Q 040403 414 WE-GASLVEVVQQV---KPDVLLGLSA 436 (623)
Q Consensus 414 ~~-~~~L~e~V~~v---kptvLIG~S~ 436 (623)
.. ..++.+.++.. +.|++|=+++
T Consensus 245 ~~~~~~~~~~~~~~~~~g~D~vid~~g 271 (374)
T 1cdo_A 245 NDHSEPISQVLSKMTNGGVDFSLECVG 271 (374)
T ss_dssp GGCSSCHHHHHHHHHTSCBSEEEECSC
T ss_pred cccchhHHHHHHHHhCCCCCEEEECCC
Confidence 11 13466666543 6788887664
No 489
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*
Probab=41.70 E-value=21 Score=38.81 Aligned_cols=23 Identities=13% Similarity=0.414 Sum_probs=19.9
Q ss_pred CceEEEeCcchHHHHHHHHHHHH
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~ 359 (623)
+..|+|+|||.+|+..|-.|...
T Consensus 26 ~~dVlIVGaGpaGl~~A~~La~~ 48 (549)
T 2r0c_A 26 ETDVLILGGGPVGMALALDLAHR 48 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT
T ss_pred CCCEEEECcCHHHHHHHHHHHHC
Confidence 45899999999999999888763
No 490
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=41.68 E-value=15 Score=37.65 Aligned_cols=35 Identities=23% Similarity=0.395 Sum_probs=27.0
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcc
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLI 387 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi 387 (623)
..++||+|+|.||+..|..+.+. | ++.++|+.-..
T Consensus 8 ~~~vvIIGgG~AGl~aA~~l~~~-----g-----------~V~lie~~~~~ 42 (367)
T 1xhc_A 8 GSKVVIVGNGPGGFELAKQLSQT-----Y-----------EVTVIDKEPVP 42 (367)
T ss_dssp -CEEEEECCSHHHHHHHHHHTTT-----S-----------EEEEECSSSSC
T ss_pred CCcEEEECCcHHHHHHHHHHhhc-----C-----------CEEEEECCCCC
Confidence 56899999999999998887431 2 68999986543
No 491
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}
Probab=41.40 E-value=22 Score=33.27 Aligned_cols=68 Identities=16% Similarity=0.272 Sum_probs=37.4
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChhhHHhHHHhhhhcccccCCCC
Q 040403 339 KIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGA 417 (623)
Q Consensus 339 riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~~~~fA~~~~~~~~~~~~~~~ 417 (623)
+|||.|| |-.|..+++.|++ + | -+++++|++. . .+.. .+. -|+. ...
T Consensus 3 ~vlVtGasg~iG~~l~~~L~~----~-g----------~~V~~~~r~~----~--~~~~---~~~---~D~~-----~~~ 50 (255)
T 2dkn_A 3 VIAITGSASGIGAALKELLAR----A-G----------HTVIGIDRGQ----A--DIEA---DLS---TPGG-----RET 50 (255)
T ss_dssp EEEEETTTSHHHHHHHHHHHH----T-T----------CEEEEEESSS----S--SEEC---CTT---SHHH-----HHH
T ss_pred EEEEeCCCcHHHHHHHHHHHh----C-C----------CEEEEEeCCh----h--Hccc---ccc---CCcc-----cHH
Confidence 6899988 5555555555544 3 6 3588888742 1 1110 011 1110 112
Q ss_pred CHHHHHhhc--CCcEEEeccCCC
Q 040403 418 SLVEVVQQV--KPDVLLGLSAVG 438 (623)
Q Consensus 418 ~L~e~V~~v--kptvLIG~S~~~ 438 (623)
++.++++.+ ++|++|=+.+..
T Consensus 51 ~~~~~~~~~~~~~d~vi~~Ag~~ 73 (255)
T 2dkn_A 51 AVAAVLDRCGGVLDGLVCCAGVG 73 (255)
T ss_dssp HHHHHHHHHTTCCSEEEECCCCC
T ss_pred HHHHHHHHcCCCccEEEECCCCC
Confidence 356666655 899999877654
No 492
>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1
Probab=41.35 E-value=57 Score=33.15 Aligned_cols=50 Identities=20% Similarity=0.223 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEcc
Q 040403 316 VAVAGLLGAVRAQGRSMIDFPKQKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDA 383 (623)
Q Consensus 316 V~lAgll~A~r~~g~~~~~l~d~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~ 383 (623)
+.++..+.+++..+.- -.+++++|.|| |..|..+++++... |. +++.+|+
T Consensus 153 ~~~~ta~~al~~~~~~---~~g~~vlV~GasggiG~~~~~~a~~~-----Ga----------~Vi~~~~ 203 (351)
T 1yb5_A 153 IPYFTAYRALIHSACV---KAGESVLVHGASGGVGLAACQIARAY-----GL----------KILGTAG 203 (351)
T ss_dssp HHHHHHHHHHHTTSCC---CTTCEEEEETCSSHHHHHHHHHHHHT-----TC----------EEEEEES
T ss_pred hHHHHHHHHHHHhhCC---CCcCEEEEECCCChHHHHHHHHHHHC-----CC----------EEEEEeC
Confidence 3455566666533332 25789999998 88887776665542 72 5777775
No 493
>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}
Probab=41.25 E-value=23 Score=36.00 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.3
Q ss_pred CCceEEEeCcchHHHHHHHHHHHH
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~ 359 (623)
...+|.|+|+|..|.|||..+. +
T Consensus 11 ~~~~V~vIG~G~MG~~iA~~la-a 33 (293)
T 1zej_A 11 HHMKVFVIGAGLMGRGIAIAIA-S 33 (293)
T ss_dssp -CCEEEEECCSHHHHHHHHHHH-T
T ss_pred CCCeEEEEeeCHHHHHHHHHHH-c
Confidence 3579999999999999999988 6
No 494
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=41.19 E-value=22 Score=38.29 Aligned_cols=34 Identities=26% Similarity=0.454 Sum_probs=27.6
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccC
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAK 384 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~ 384 (623)
.+..|+|+|||.||+..|..+.+. | .++.++|++
T Consensus 31 ~~~DVvVIGgGpaGl~aA~~la~~-----G----------~~V~liEk~ 64 (519)
T 3qfa_A 31 YDYDLIIIGGGSGGLAAAKEAAQY-----G----------KKVMVLDFV 64 (519)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHT-----T----------CCEEEECCC
T ss_pred CCCCEEEECCCHHHHHHHHHHHhC-----C----------CeEEEEecc
Confidence 356899999999999999887763 7 358889874
No 495
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=41.10 E-value=22 Score=34.90 Aligned_cols=37 Identities=30% Similarity=0.390 Sum_probs=27.5
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCc
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGL 386 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GL 386 (623)
.+..|||+|||.||+..|..+.+. .| .++.++|+..-
T Consensus 38 ~~~dVvIIGgG~aGl~aA~~la~~----~G----------~~V~viEk~~~ 74 (284)
T 1rp0_A 38 AETDVVVVGAGSAGLSAAYEISKN----PN----------VQVAIIEQSVS 74 (284)
T ss_dssp TEEEEEEECCSHHHHHHHHHHHTS----TT----------SCEEEEESSSS
T ss_pred cccCEEEECccHHHHHHHHHHHHc----CC----------CeEEEEECCCC
Confidence 356899999999999998877651 15 35778887643
No 496
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Probab=40.86 E-value=13 Score=38.00 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=20.8
Q ss_pred CCceEEEeCcchHHHHHHHHHHHH
Q 040403 336 PKQKIVVAGAGSAGLGVLNAARKT 359 (623)
Q Consensus 336 ~d~riv~~GAGsAg~GIA~ll~~~ 359 (623)
+..+|+|+|||.+|+..|..|.+.
T Consensus 5 ~~~~v~IIGaG~aGl~aA~~L~~~ 28 (424)
T 2b9w_A 5 KDSRIAIIGAGPAGLAAGMYLEQA 28 (424)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHT
T ss_pred CCCCEEEECcCHHHHHHHHHHHhC
Confidence 457899999999999999888764
No 497
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}
Probab=40.83 E-value=28 Score=34.48 Aligned_cols=104 Identities=14% Similarity=0.218 Sum_probs=55.7
Q ss_pred CCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCcccCCCCCCChh-hHHhHHHhhhhcccc
Q 040403 335 FPKQKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPD-AKPFARKVNEISRQG 412 (623)
Q Consensus 335 l~d~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~~l~~~-~~~fA~~~~~~~~~~ 412 (623)
++..+|+|.|| |-.|..+++.|++ + | -+++++|+..- .....+... ...+.. -|
T Consensus 19 ~~~~~vlVTGatG~iG~~l~~~L~~----~-g----------~~V~~~~r~~~--~~~~~l~~~~~~~~~~--~D----- 74 (333)
T 2q1w_A 19 SHMKKVFITGICGQIGSHIAELLLE----R-G----------DKVVGIDNFAT--GRREHLKDHPNLTFVE--GS----- 74 (333)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHH----T-T----------CEEEEEECCSS--CCGGGSCCCTTEEEEE--CC-----
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHH----C-C----------CEEEEEECCCc--cchhhHhhcCCceEEE--Ee-----
Confidence 66789999996 6677777666655 3 6 35788877410 000001110 000100 01
Q ss_pred cCCCCCHHHHHhhcCCcEEEeccCCCCC--C-----------CHHHHHHcccCCCCCCEEEecC
Q 040403 413 LWEGASLVEVVQQVKPDVLLGLSAVGGL--F-----------SKEVLEAMRGSTSTRPAIFAMS 463 (623)
Q Consensus 413 ~~~~~~L~e~V~~vkptvLIG~S~~~g~--F-----------t~evv~~M~a~~~erPIIFaLS 463 (623)
.....++.++++..++|++|=+.+.... . |..+++++ .+..-+.|||.=|
T Consensus 75 l~d~~~~~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~N~~~~~~l~~a~-~~~~~~~iV~~SS 137 (333)
T 2q1w_A 75 IADHALVNQLIGDLQPDAVVHTAASYKDPDDWYNDTLTNCVGGSNVVQAA-KKNNVGRFVYFQT 137 (333)
T ss_dssp TTCHHHHHHHHHHHCCSEEEECCCCCSCTTCHHHHHHHHTHHHHHHHHHH-HHTTCSEEEEEEE
T ss_pred CCCHHHHHHHHhccCCcEEEECceecCCCccCChHHHHHHHHHHHHHHHH-HHhCCCEEEEECc
Confidence 1122347778876679999987765432 1 34577777 4444467887543
No 498
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=40.13 E-value=21 Score=40.82 Aligned_cols=36 Identities=28% Similarity=0.413 Sum_probs=29.2
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEccCCc
Q 040403 337 KQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGL 386 (623)
Q Consensus 337 d~riv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~~GL 386 (623)
+.+|||+|||.+|+.+|-.|.+. |. .++.++|+..+
T Consensus 4 ~~dVvIIGgGi~Gls~A~~La~~-----G~---------~~V~vlE~~~~ 39 (830)
T 1pj5_A 4 TPRIVIIGAGIVGTNLADELVTR-----GW---------NNITVLDQGPL 39 (830)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHT-----TC---------CCEEEECSSCT
T ss_pred CCCEEEECcCHHHHHHHHHHHhC-----CC---------CcEEEEeCCCC
Confidence 46899999999999999888764 73 36888988754
No 499
>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*
Probab=39.99 E-value=67 Score=31.77 Aligned_cols=43 Identities=30% Similarity=0.367 Sum_probs=26.5
Q ss_pred HHHHHhCCCCCCCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCcchhhhccCeEEEEcc
Q 040403 323 GAVRAQGRSMIDFPKQKIVVAGA-GSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDA 383 (623)
Q Consensus 323 ~A~r~~g~~~~~l~d~riv~~GA-GsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~lvD~ 383 (623)
.+++..+.+ ..+.+|+|.|| |..|...+++... .|. +++.+|+
T Consensus 136 ~~~~~~~~~---~~~g~VlV~Ga~G~vG~~aiqla~~-----~Ga----------~Vi~~~~ 179 (324)
T 3nx4_A 136 MALEDAGIR---PQDGEVVVTGASGGVGSTAVALLHK-----LGY----------QVAAVSG 179 (324)
T ss_dssp HHHHHTTCC---GGGCCEEESSTTSHHHHHHHHHHHH-----TTC----------CEEEEES
T ss_pred HHhhhcccC---CCCCeEEEECCCcHHHHHHHHHHHH-----cCC----------EEEEEeC
Confidence 334444444 34434999998 8888766655543 273 4777775
No 500
>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*
Probab=39.93 E-value=17 Score=39.09 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=0.0
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCCcchhhhccCeEE--EEccC
Q 040403 340 IVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFW--VVDAK 384 (623)
Q Consensus 340 iv~~GAGsAg~GIA~ll~~~m~~~~Gls~~~~eeA~~~i~--lvD~~ 384 (623)
||++|||.+|+++|-.|.+......-+.. .+.....| ++|++
T Consensus 42 vi~IGaGp~gLa~A~~L~~~~~~~~~~~~---~~~~~~~~~~f~e~~ 85 (501)
T 4b63_A 42 LLCVGFGPASLAIAIALHDALDPRLNKSA---SNIHAQPKICFLERQ 85 (501)
T ss_dssp EEEECCSHHHHHHHHHHHHHHCTTTCTTC-------CCCCEEEEESS
T ss_pred EEEEcccHHHHHHHHHHHhcCCCceEEec---cccCCCcceeeEecc
Done!