Your job contains 1 sequence.
>040406
IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN
PDALRNVWQYAVTSKKGKSIFTEEKSSLANGSSAEKISFLHDIVSGSSMIEEKESKTNSK
RKASKRRKDELEGENAAAPKKAKVVWTNSLHNRFLQAIRHITLEKAVPKKILEFMNVPGL
TRENVASHLQKYRIFLKRVADDGINAALKNFNHRSSLASGRTSMMLQEVQDYAQAIEKQL
QMRTSPFIPRYGRGISELNGNTSFGSIGLQSHNSLSHVGLLGVQDNFHQPFFGNTTYPLY
QANPGTTFGTGLIDMGTNSFSCGGLSGGLMNGTNSNQIFHQKSKLRPDPYDNNTGASSLK
GFGASGLEKMWTINNNPYLNYAGIRLKNDGDQLVGAGEVGLNVKGDAGAGNEGATFHHLP
LGYSSSPAGFAVGNEQEHTSVLPPLSLSQQQYCLGKKVENDFTFGLMNDANASVNDDTAQ
PGRLGEGADFGDLLFDLSDFQFLFQPQGDGEGALNPNIGSGSGSHQPELNRPINQSQNPV
LPSAFADNASGPWNEPTLEQACPILN
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 040406
(566 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2130095 - symbol:RR2 "response regulator 2" sp... 442 2.8e-43 2
TAIR|locus:2093668 - symbol:RR1 "response regulator 1" sp... 430 1.1e-41 2
TAIR|locus:2065398 - symbol:RR14 "response regulator 14" ... 409 3.4e-38 1
TAIR|locus:2040194 - symbol:RR12 "response regulator 12" ... 362 8.5e-32 2
TAIR|locus:2116587 - symbol:RR10 "response regulator 10" ... 255 1.6e-31 2
TAIR|locus:2008585 - symbol:ARR11 "response regulator 11"... 335 4.4e-28 1
UNIPROTKB|Q7Y0W3 - symbol:Q7Y0W3 "Two-component response ... 269 1.3e-22 1
UNIPROTKB|Q7Y0W5 - symbol:EHD1 "Two-component response re... 269 1.3e-22 1
TAIR|locus:2155954 - symbol:APRR4 "pseudo-response regula... 265 3.5e-22 1
TAIR|locus:2148348 - symbol:BOA "AT5G59570" species:3702 ... 219 3.5e-17 1
TAIR|locus:2175364 - symbol:AT5G05090 "AT5G05090" species... 211 2.5e-16 1
TAIR|locus:2058445 - symbol:MYBC1 "AT2G40970" species:370... 206 8.8e-16 1
TAIR|locus:2167639 - symbol:GLK2 "AT5G44190" species:3702... 209 4.3e-14 1
TAIR|locus:2103247 - symbol:AT3G10760 "AT3G10760" species... 205 6.5e-14 1
UNIPROTKB|Q5Z5I4 - symbol:GLK1 "Probable transcription fa... 207 1.2e-13 1
TAIR|locus:2141020 - symbol:APRR2 species:3702 "Arabidops... 169 2.7e-09 1
TAIR|locus:2174063 - symbol:RR23 "response regulator 23" ... 116 3.7e-09 2
TAIR|locus:2205339 - symbol:HRS1 "HYPERSENSITIVITY TO LOW... 159 1.3e-08 1
TAIR|locus:2045761 - symbol:AT2G01060 species:3702 "Arabi... 152 4.7e-08 1
UNIPROTKB|Q74AX6 - symbol:cheY40H-1 "Response receiver Ch... 134 5.1e-08 1
TIGR_CMR|GSU_2223 - symbol:GSU_2223 "chemotaxis protein C... 134 5.1e-08 1
TAIR|locus:2063746 - symbol:AT2G03500 "AT2G03500" species... 154 8.1e-08 1
UNIPROTKB|Q9KS62 - symbol:VC_1398 "Chemotaxis protein Che... 131 1.1e-07 1
TIGR_CMR|VC_1398 - symbol:VC_1398 "chemotaxis protein Che... 131 1.1e-07 1
TAIR|locus:2026863 - symbol:AT1G68670 species:3702 "Arabi... 148 2.4e-07 1
TAIR|locus:2151206 - symbol:PRR7 "pseudo-response regulat... 136 3.4e-07 2
UNIPROTKB|Q3ADA5 - symbol:cheY2 "Chemotaxis protein CheY"... 125 4.8e-07 1
TIGR_CMR|CHY_1032 - symbol:CHY_1032 "chemotaxis protein C... 125 4.8e-07 1
TAIR|locus:2044376 - symbol:PRR9 "pseudo-response regulat... 138 4.8e-07 2
TAIR|locus:2148720 - symbol:PHL1 "AT5G29000" species:3702... 146 5.7e-07 1
UNIPROTKB|Q4GZK8 - symbol:rr3 "Type A response regulator ... 124 6.1e-07 1
TIGR_CMR|CJE_1261 - symbol:CJE_1261 "chemotaxis protein C... 124 6.1e-07 1
TAIR|locus:2087740 - symbol:AT3G12730 species:3702 "Arabi... 137 1.2e-06 1
UNIPROTKB|P71403 - symbol:cheY "Chemotaxis protein CheY h... 121 1.3e-06 1
TAIR|locus:2042927 - symbol:AT2G38300 "AT2G38300" species... 141 1.3e-06 1
TAIR|locus:2085984 - symbol:AT3G25790 species:3702 "Arabi... 141 1.5e-06 1
TAIR|locus:2100880 - symbol:AT3G04450 species:3702 "Arabi... 142 1.8e-06 1
TAIR|locus:2172394 - symbol:MYR1 "myb-related protein 1" ... 142 2.2e-06 2
TAIR|locus:2102509 - symbol:RR17 "response regulator 17" ... 118 2.7e-06 1
UNIPROTKB|Q4GZK3 - symbol:rr8 "Type A response regulator ... 117 3.5e-06 1
UNIPROTKB|Q74DM7 - symbol:cheY34H-1 "Response receiver Ch... 117 3.5e-06 1
UNIPROTKB|Q9KQD5 - symbol:VC_2065 "Chemotaxis protein Che... 117 3.5e-06 1
TIGR_CMR|GSU_1289 - symbol:GSU_1289 "chemotaxis protein C... 117 3.5e-06 1
TIGR_CMR|VC_2065 - symbol:VC_2065 "chemotaxis protein Che... 117 3.5e-06 1
TAIR|locus:2031210 - symbol:AT1G25550 species:3702 "Arabi... 137 3.9e-06 1
TAIR|locus:2095933 - symbol:MYR2 species:3702 "Arabidopsi... 138 3.9e-06 1
UNIPROTKB|Q4KG39 - symbol:cheY "Chemotaxis protein CheY" ... 116 4.4e-06 1
TIGR_CMR|GSU_0104 - symbol:GSU_0104 "response regulator, ... 116 4.4e-06 1
TIGR_CMR|GSU_0403 - symbol:GSU_0403 "chemotaxis protein C... 116 4.4e-06 1
TAIR|locus:2038957 - symbol:AT2G20400 "AT2G20400" species... 137 5.2e-06 1
TIGR_CMR|CJE_1664 - symbol:CJE_1664 "DNA-binding response... 131 5.2e-06 1
UNIPROTKB|Q9KSH9 - symbol:VC_1277 "Transcriptional regula... 130 5.4e-06 1
TIGR_CMR|VC_1277 - symbol:VC_1277 "transcriptional regula... 130 5.4e-06 1
TAIR|locus:2025911 - symbol:ARR3 "response regulator 3" s... 129 9.9e-06 1
TAIR|locus:2163198 - symbol:TOC1 "TIMING OF CAB EXPRESSIO... 122 1.1e-05 2
TAIR|locus:2206415 - symbol:APL "ALTERED PHLOEM DEVELOPME... 132 1.5e-05 1
TIGR_CMR|GSU_1117 - symbol:GSU_1117 "response regulator" ... 111 1.5e-05 1
UNIPROTKB|Q4GZK4 - symbol:rr7 "Type A response regulator ... 125 1.7e-05 1
TAIR|locus:2026739 - symbol:AT1G69580 species:3702 "Arabi... 131 1.7e-05 1
TIGR_CMR|GSU_1989 - symbol:GSU_1989 "sigma-54 dependent D... 126 1.7e-05 2
TAIR|locus:2089260 - symbol:AT3G13040 species:3702 "Arabi... 134 2.5e-05 2
TAIR|locus:2157146 - symbol:AT5G45580 species:3702 "Arabi... 126 3.5e-05 1
TIGR_CMR|GSU_2581 - symbol:GSU_2581 "sigma-54 dependent t... 131 3.5e-05 2
UNIPROTKB|Q4GZK5 - symbol:rr6 "Type A response regulator ... 117 3.8e-05 1
TAIR|locus:2139865 - symbol:PHR1 "phosphate starvation re... 129 4.2e-05 1
UNIPROTKB|Q9KQ67 - symbol:VC_2135 "Sigma-54 dependent res... 130 4.2e-05 1
TIGR_CMR|VC_2135 - symbol:VC_2135 "flagellar regulatory p... 130 4.2e-05 1
DICTYBASE|DDB_G0282289 - symbol:dhkD "histidine kinase D"... 136 4.3e-05 1
UNIPROTKB|Q4GZK2 - symbol:rr9 "Type A response regulator ... 121 4.6e-05 1
TIGR_CMR|SO_3209 - symbol:SO_3209 "chemotaxis protein Che... 106 5.3e-05 1
TAIR|locus:2011286 - symbol:ARR7 "response regulator 7" s... 121 5.3e-05 1
TAIR|locus:2171427 - symbol:KAN "KANADI" species:3702 "Ar... 120 5.3e-05 3
TIGR_CMR|GSU_1891 - symbol:GSU_1891 "response regulator" ... 127 6.0e-05 1
TIGR_CMR|CHY_1018 - symbol:CHY_1018 "chemotaxis response ... 105 6.7e-05 1
TIGR_CMR|GSU_2212 - symbol:GSU_2212 "chemotaxis protein C... 105 6.7e-05 1
TAIR|locus:2063141 - symbol:AT2G40260 "AT2G40260" species... 121 7.5e-05 2
TAIR|locus:2115070 - symbol:AT4G37180 species:3702 "Arabi... 121 8.0e-05 2
UNIPROTKB|Q3ADB1 - symbol:cheY1 "Chemotaxis protein CheY"... 104 8.6e-05 1
UNIPROTKB|Q48GG3 - symbol:cheY2 "Chemotaxis protein CheY"... 104 8.6e-05 1
UNIPROTKB|Q8EF67 - symbol:cheY "Chemotaxis signal transdu... 104 8.6e-05 1
TIGR_CMR|CHY_1026 - symbol:CHY_1026 "chemotaxis protein C... 104 8.6e-05 1
TIGR_CMR|CPS_1520 - symbol:CPS_1520 "chemotaxis protein C... 104 8.6e-05 1
TIGR_CMR|SO_2120 - symbol:SO_2120 "chemotaxis protein Che... 104 8.6e-05 1
TAIR|locus:2170199 - symbol:AT5G06800 species:3702 "Arabi... 125 9.8e-05 1
UNIPROTKB|Q48ND2 - symbol:cheY1 "Chemotaxis protein CheY"... 103 0.00011 1
TIGR_CMR|BA_5661 - symbol:BA_5661 "DNA-binding response r... 119 0.00011 1
TAIR|locus:2194584 - symbol:ARR4 "response regulator 4" s... 121 0.00012 1
TIGR_CMR|CHY_1125 - symbol:CHY_1125 "response regulator" ... 118 0.00012 1
TAIR|locus:2093726 - symbol:AT3G24120 species:3702 "Arabi... 122 0.00013 1
TAIR|locus:2051572 - symbol:AT2G06020 "AT2G06020" species... 122 0.00014 1
TIGR_CMR|GSU_2693 - symbol:GSU_2693 "response regulator" ... 102 0.00014 1
TAIR|locus:2119425 - symbol:UNE16 "unfertilized embryo sa... 121 0.00017 1
UNIPROTKB|Q9KKK8 - symbol:VC_A1096 "Chemotaxis protein Ch... 101 0.00018 1
TIGR_CMR|VC_A1096 - symbol:VC_A1096 "chemotaxis protein C... 101 0.00018 1
TIGR_CMR|CPS_0397 - symbol:CPS_0397 "nitrogen regulation ... 124 0.00018 1
TAIR|locus:2163852 - symbol:ATS "AT5G42630" species:3702 ... 120 0.00019 1
TAIR|locus:2125771 - symbol:AT4G04580 "AT4G04580" species... 111 0.00023 1
TIGR_CMR|BA_1660 - symbol:BA_1660 "chemotaxis response re... 100 0.00023 1
TIGR_CMR|GSU_1316 - symbol:GSU_1316 "response regulator" ... 120 0.00026 1
TAIR|locus:2027237 - symbol:ARR15 "response regulator 15"... 115 0.00028 1
WARNING: Descriptions of 22 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2130095 [details] [associations]
symbol:RR2 "response regulator 2" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009736 "cytokinin
mediated signaling pathway" evidence=RCA;TAS] [GO:0009723 "response
to ethylene stimulus" evidence=IMP] [GO:0009735 "response to
cytokinin stimulus" evidence=IEP;IGI] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0009873 "ethylene mediated signaling pathway"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0010029 "regulation of seed germination" evidence=RCA]
[GO:0031537 "regulation of anthocyanin metabolic process"
evidence=RCA] [GO:0048831 "regulation of shoot system development"
evidence=RCA] InterPro:IPR001005 InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009873 GO:GO:0010119 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 GO:GO:0010150 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:Z97340 EMBL:AL161543 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491
eggNOG:COG2204 InterPro:IPR017053 PIRSF:PIRSF036392
ProtClustDB:CLSN2680844 EMBL:AB016472 EMBL:AJ005196 EMBL:DQ473518
EMBL:DQ473519 EMBL:DQ473520 EMBL:DQ473521 EMBL:AK175378
EMBL:AK175737 EMBL:AK175959 EMBL:AK176614 IPI:IPI00518324
PIR:D71427 PIR:T51247 RefSeq:NP_193346.4 UniGene:At.21955
ProteinModelPortal:Q9ZWJ9 SMR:Q9ZWJ9 IntAct:Q9ZWJ9 STRING:Q9ZWJ9
PaxDb:Q9ZWJ9 PRIDE:Q9ZWJ9 EnsemblPlants:AT4G16110.1 GeneID:827297
KEGG:ath:AT4G16110 GeneFarm:3921 TAIR:At4g16110 InParanoid:Q9ZWJ9
OMA:ILERMLM PhylomeDB:Q9ZWJ9 Genevestigator:Q9ZWJ9
GermOnline:AT4G16110 Uniprot:Q9ZWJ9
Length = 664
Score = 442 (160.7 bits), Expect = 2.8e-43, Sum P(2) = 2.8e-43
Identities = 90/215 (41%), Positives = 142/215 (66%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
D+VI+D+HMP+M+G +L + + E + LPV++MS+DD +SV++K + GAV Y++KPV
Sbjct: 75 DIVISDVHMPDMDGFKLLEHVGLE-MDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRI 133
Query: 62 DALRNVWQYAVTSKKGKSIFTEEKS-SLAN--GSSAEKISFLHDIVSGSSMIEEKESKTN 118
+AL+N+WQ+ V K+ + +E S+ + G + D + SS + E +++
Sbjct: 134 EALKNIWQHVVRKKRNEWNVSEHSGGSIEDTGGDRDRQQQHREDADNNSSSVNEGNGRSS 193
Query: 119 SKRKASKRRKDELEGENAAAPKKAKVVWTNSLHNRFLQAIRHITLEKAVPKKILEFMNVP 178
KRK + + E++++ KK +VVW+ LH +F+ A+ + ++KAVPKKILE MNVP
Sbjct: 194 RKRKEEEVDDQGDDKEDSSSLKKPRVVWSVELHQQFVAAVNQLGVDKAVPKKILEMMNVP 253
Query: 179 GLTRENVASHLQKYRIFLKRVADDGINAALKNFNH 213
GLTRENVASHLQKYRI+L+R+ G++ N NH
Sbjct: 254 GLTRENVASHLQKYRIYLRRLG--GVSQHQGNMNH 286
Score = 37 (18.1 bits), Expect = 2.8e-43, Sum P(2) = 2.8e-43
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 439 TSVLPPLSLSQQQYC-LGK 456
T LPP SL+Q Q LG+
Sbjct: 313 TGQLPPQSLAQLQAAGLGR 331
>TAIR|locus:2093668 [details] [associations]
symbol:RR1 "response regulator 1" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=IGI;RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI;IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010380 "regulation of chlorophyll biosynthetic process"
evidence=IGI] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=IGI;RCA] [GO:0048367 "shoot system development"
evidence=IGI] [GO:0080022 "primary root development" evidence=IGI]
[GO:0006487 "protein N-linked glycosylation" evidence=RCA]
[GO:0006635 "fatty acid beta-oxidation" evidence=RCA] [GO:0010029
"regulation of seed germination" evidence=RCA] [GO:0010043
"response to zinc ion" evidence=RCA] [GO:0016558 "protein import
into peroxisome matrix" evidence=RCA] [GO:0048831 "regulation of
shoot system development" evidence=RCA] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0009736 GO:GO:0080022 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0048367 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491 eggNOG:COG0745
GO:GO:0031537 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AB016471
EMBL:AP001308 EMBL:AB028608 EMBL:AY056099 EMBL:AK316883
IPI:IPI00534841 IPI:IPI00547650 PIR:T51246 RefSeq:NP_566561.2
RefSeq:NP_850600.2 UniGene:At.183 UniGene:At.48672
ProteinModelPortal:Q940D0 SMR:Q940D0 IntAct:Q940D0 STRING:Q940D0
PaxDb:Q940D0 PRIDE:Q940D0 EnsemblPlants:AT3G16857.2 GeneID:820940
KEGG:ath:AT3G16857 GeneFarm:3920 TAIR:At3g16857
HOGENOM:HOG000034078 InParanoid:Q940D0 OMA:RTCLYEV PhylomeDB:Q940D0
ProtClustDB:CLSN2680844 Genevestigator:Q940D0 GermOnline:AT3G16857
Uniprot:Q940D0
Length = 690
Score = 430 (156.4 bits), Expect = 1.1e-41, Sum P(2) = 1.1e-41
Identities = 93/228 (40%), Positives = 143/228 (62%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
D+VI+D+HMP+M+G +L + + E + LPV++MS+DD +SV++K + GAV Y++KPV
Sbjct: 84 DIVISDVHMPDMDGFKLLEHVGLE-MDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRM 142
Query: 62 DALRNVWQYAVTSKKGKSIFTEEKSSLANGSSAEKISFLHD-----IVSGSSMIEEKESK 116
+AL+N+WQ+ V ++ + E S+ ++ + G +++ S
Sbjct: 143 EALKNIWQHVVRKRRSEWSVPEHSGSIEETGERQQQQHRGGGGGAAVSGGEDAVDDNSSS 202
Query: 117 TNSK---RKASKRRKDELEGE--------NAAAPKKAKVVWTNSLHNRFLQAIRHITLEK 165
N R +S++RKDE EGE +A+ KK +VVW+ LH +F+ A+ + +EK
Sbjct: 203 VNEGNNWRSSSRKRKDE-EGEEQGDDKDEDASNLKKPRVVWSVELHQQFVAAVNQLGVEK 261
Query: 166 AVPKKILEFMNVPGLTRENVASHLQKYRIFLKRVADDGINAALKNFNH 213
AVPKKILE MNVPGLTRENVASHLQKYRI+L+R+ G++ N N+
Sbjct: 262 AVPKKILELMNVPGLTRENVASHLQKYRIYLRRLG--GVSQHQGNLNN 307
Score = 38 (18.4 bits), Expect = 1.1e-41, Sum P(2) = 1.1e-41
Identities = 11/54 (20%), Positives = 21/54 (38%)
Query: 331 NGTNSNQIFHQKSKLRPDPYDNNTGASSLKGFGASGLEKMWTINNNPYLNYAGI 384
+G + + S++ P Y N T S + + +N+ P + GI
Sbjct: 477 SGFSGRNNIPESSRVLPTSYTNLTTQHSSSSMPYNNFQPELPVNSFPLASAPGI 530
>TAIR|locus:2065398 [details] [associations]
symbol:RR14 "response regulator 14" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=RCA;TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042802 "identical
protein binding" evidence=IPI] [GO:0010029 "regulation of seed
germination" evidence=RCA] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=RCA] [GO:0048831 "regulation of shoot
system development" evidence=RCA] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491
eggNOG:COG0745 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AC006069
EMBL:AY099726 EMBL:AY128887 EMBL:AY088149 IPI:IPI00545640
PIR:G84428 RefSeq:NP_178285.1 UniGene:At.42470
ProteinModelPortal:Q8L9Y3 SMR:Q8L9Y3 IntAct:Q8L9Y3 STRING:Q8L9Y3
EnsemblPlants:AT2G01760.1 GeneID:814707 KEGG:ath:AT2G01760
GeneFarm:3930 TAIR:At2g01760 HOGENOM:HOG000034077 InParanoid:Q8L9Y3
OMA:SWILERS PhylomeDB:Q8L9Y3 ProtClustDB:CLSN2913129
Genevestigator:Q8L9Y3 GermOnline:AT2G01760 Uniprot:Q8L9Y3
Length = 382
Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
Identities = 105/301 (34%), Positives = 170/301 (56%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
DLV++D+HMP MNG L +++ + LPV++MS D R + +M + GA Y++KP+ P
Sbjct: 58 DLVLSDVHMPGMNGYNLLQQVGLLEMDLPVIMMSVDGRTTTVMTGINHGACDYLIKPIRP 117
Query: 62 DALRNVWQYAVTSKKGKSIFTEE-KSSLANGSSAEKISFLHDIVSGSSMIEEKESKTNSK 120
+ L+N+WQ+ V + K + +E +SS A + S +VS S EE K +K
Sbjct: 118 EELKNIWQHVV---RRKCVMKKELRSSQALEDNKNSGSLETVVVSVSECSEESLMKCRNK 174
Query: 121 RKASKRR--KDELEGENAAAP---KKAKVVWTNSLHNRFLQAIRHITLEKAVPKKILEFM 175
+K KR +D+ E + P KK++VVW+ LH +F+ A+ + ++KAVPK+ILE M
Sbjct: 175 KKKKKRSVDRDDNEDDLLLDPGNSKKSRVVWSIELHQQFVNAVNKLGIDKAVPKRILELM 234
Query: 176 NVPGLTRENVASHLQKYRIFLKRVADDGINA----ALKNF-NHRSSLASGRTSMMLQEVQ 230
NVPGL+RENVASHLQK+R++LKR++ + + + K + N ++ ++SG+
Sbjct: 235 NVPGLSRENVASHLQKFRLYLKRLSGEASQSNDSESTKRYENIQALVSSGQLHPQTLAAL 294
Query: 231 DYAQAIEKQLQMRTSPFIPRYGRGISELNGNTSFGSIGLQSHNSLSHVGLLGVQD--NFH 288
+ Q I+ +IP G S+ N + S + S+ +S V + G+ NF
Sbjct: 295 -FGQPIDNHHSASFGVWIPNDNLGRSQ-NEHFSV-DVSSASNRPVS-VAVHGLSSSANFR 350
Query: 289 Q 289
Q
Sbjct: 351 Q 351
>TAIR|locus:2040194 [details] [associations]
symbol:RR12 "response regulator 12" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=IGI;TAS]
[GO:0009735 "response to cytokinin stimulus" evidence=IGI]
[GO:0010380 "regulation of chlorophyll biosynthetic process"
evidence=IGI] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=IGI] [GO:0048367 "shoot system development"
evidence=IGI] [GO:0080022 "primary root development" evidence=IGI]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 GO:GO:0010380
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0080022
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0048367
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 KO:K14491 eggNOG:COG2204 HOGENOM:HOG000238840
GO:GO:0031537 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:BE522295
IPI:IPI00541861 IPI:IPI01019479 RefSeq:NP_180090.6 UniGene:At.19775
ProteinModelPortal:P62598 SMR:P62598 IntAct:P62598 STRING:P62598
GeneID:817056 KEGG:ath:AT2G25180 GeneFarm:3926 TAIR:At2g25180
InParanoid:P62598 OMA:QQAIMAN ArrayExpress:P62598
Genevestigator:P62598 GermOnline:AT2G25180 Uniprot:P62598
Length = 596
Score = 362 (132.5 bits), Expect = 8.5e-32, Sum P(2) = 8.5e-32
Identities = 81/202 (40%), Positives = 124/202 (61%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
DLVI+D+ MP+M+G +L + + E + LPV+++S+ +MK + GA Y++KPV
Sbjct: 64 DLVISDVDMPDMDGFKLLELVGLE-MDLPVIMLSAHSDPKYVMKGVTHGACDYLLKPVRI 122
Query: 62 DALRNVWQYAVTSKKGKSIFTEEKSSLANGSSAEKISFLHDIVSGSSMIEEKESKTNSKR 121
+ L+N+WQ+ V S+ K+ + +GS E + G+S ++ K N KR
Sbjct: 123 EELKNIWQHVVRSRFDKNRGSNNNGDKRDGSGNEGV--------GNS--DQNNGKGNRKR 172
Query: 122 KASKRR-KDELEGEN--AAAPKKAKVVWTNSLHNRFLQAIRHITLEKAVPKKILEFMNVP 178
K +DE +N + A KK +VVWT LH +F+ A+ + EKA+PKKIL+ MNV
Sbjct: 173 KDQYNEDEDEDRDDNDDSCAQKKQRVVWTVELHKKFVAAVNQLGYEKAMPKKILDLMNVE 232
Query: 179 GLTRENVASHLQKYRIFLKRVA 200
LTRENVASHLQK+R++LKR++
Sbjct: 233 KLTRENVASHLQKFRLYLKRIS 254
Score = 45 (20.9 bits), Expect = 8.5e-32, Sum P(2) = 8.5e-32
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 334 NSNQIFHQ--KSKL---RPDPYD-NNTGAS 357
NSN I HQ S L RPDP + NN +S
Sbjct: 451 NSNSINHQFDVSPLPHSRPDPLEWNNVSSS 480
>TAIR|locus:2116587 [details] [associations]
symbol:RR10 "response regulator 10" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=IGI;RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI] [GO:0010380 "regulation of chlorophyll biosynthetic
process" evidence=IGI] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=IGI;RCA] [GO:0048367 "shoot system
development" evidence=IGI] [GO:0080022 "primary root development"
evidence=IGI] [GO:0010029 "regulation of seed germination"
evidence=RCA] [GO:0048831 "regulation of shoot system development"
evidence=RCA] InterPro:IPR001005 InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736
GO:GO:0080022 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0048367 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491 EMBL:AJ005195
EMBL:AL021636 EMBL:AL161580 EMBL:BT003158 IPI:IPI00544491
PIR:T04653 RefSeq:NP_194920.1 UniGene:At.122 PDB:1IRZ PDBsum:1IRZ
ProteinModelPortal:O49397 SMR:O49397 IntAct:O49397 STRING:O49397
PRIDE:O49397 EnsemblPlants:AT4G31920.1 GeneID:829322
KEGG:ath:AT4G31920 GeneFarm:2450 TAIR:At4g31920 eggNOG:COG2204
HOGENOM:HOG000238840 InParanoid:O49397 OMA:THELHNK PhylomeDB:O49397
ProtClustDB:CLSN2685991 EvolutionaryTrace:O49397
Genevestigator:O49397 GermOnline:AT4G31920 GO:GO:0031537
InterPro:IPR017053 PIRSF:PIRSF036392 Uniprot:O49397
Length = 552
Score = 255 (94.8 bits), Expect = 1.6e-31, Sum P(2) = 1.6e-31
Identities = 51/96 (53%), Positives = 68/96 (70%)
Query: 116 KTNSKRKASKRRKDELE----GENAAAPKKAKVVWTNSLHNRFLQAIRHITLEKAVPKKI 171
K N KRK ++E E ++ A KK +V+WT+ LHN+FL A+ H+ +E+AVPKKI
Sbjct: 154 KANRKRKEQYEEEEEEERGNDNDDPTAQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKI 213
Query: 172 LEFMNVPGLTRENVASHLQKYRIFLKRVADDGINAA 207
L+ MNV LTRENVASHLQK+R+ LK+V+DD I A
Sbjct: 214 LDLMNVDKLTRENVASHLQKFRVALKKVSDDAIQQA 249
Score = 165 (63.1 bits), Expect = 1.6e-31, Sum P(2) = 1.6e-31
Identities = 35/91 (38%), Positives = 59/91 (64%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
DLVI+D+ MP+M+G +L + + E + LPV+++S+ +MK + GA Y++KPV
Sbjct: 64 DLVISDVDMPDMDGFKLLELVGLE-MDLPVIMLSAHSDPKYVMKGVKHGACDYLLKPVRI 122
Query: 62 DALRNVWQYAVTSKKGKSIFTEEKSSLANGS 92
+ L+N+WQ+ V K K + KS+++NGS
Sbjct: 123 EELKNIWQHVVRKSKLK----KNKSNVSNGS 149
>TAIR|locus:2008585 [details] [associations]
symbol:ARR11 "response regulator 11" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 KO:K14491 eggNOG:COG0745 InterPro:IPR017053
PIRSF:PIRSF036392 EMBL:AJ005194 EMBL:AC008113 EMBL:BT008768
EMBL:AB041532 IPI:IPI00521272 PIR:C96700 PIR:T52034 PIR:T52074
RefSeq:NP_176938.1 UniGene:At.121 ProteinModelPortal:Q9FXD6
SMR:Q9FXD6 IntAct:Q9FXD6 STRING:Q9FXD6 EnsemblPlants:AT1G67710.1
GeneID:843096 KEGG:ath:AT1G67710 GeneFarm:3922 TAIR:At1g67710
HOGENOM:HOG000116485 InParanoid:Q9FXD6 OMA:WITRYDE PhylomeDB:Q9FXD6
ProtClustDB:CLSN2914476 Genevestigator:Q9FXD6 GermOnline:AT1G67710
Uniprot:Q9FXD6
Length = 521
Score = 335 (123.0 bits), Expect = 4.4e-28, P = 4.4e-28
Identities = 78/200 (39%), Positives = 122/200 (61%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
D+VI+D++MP+M+G +L + + E + LPV++MS D S +MK + GA Y++KP+
Sbjct: 58 DIVISDVNMPDMDGFKLLEHVGLE-LDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRM 116
Query: 62 DALRNVWQYAVTSKKGKSIFTEEKSSLANGSS-AEKISFLHDIVSGSSMIEEKESKTNSK 120
L+ +WQ+ V KK + + E G+ + H + G + K+ K
Sbjct: 117 KELKIIWQH-VLRKKLQEVRDIEGCGYEGGADWITRYDEAHFLGGGEDVSFGKKRKDFDF 175
Query: 121 RKASKRRKDELEGENAAAPKKAKVVWTNSLHNRFLQAIRHITLE-KAVPKKILEFMNVPG 179
K K +DE + ++++ KKA+VVW+ LH++F+ A+ I + KA PKKIL+ MNVP
Sbjct: 176 EK--KLLQDESDPSSSSS-KKARVVWSFELHHKFVNAVNQIGCDHKAGPKKILDLMNVPW 232
Query: 180 LTRENVASHLQKYRIFLKRV 199
LTRENVASHLQKYR++L R+
Sbjct: 233 LTRENVASHLQKYRLYLSRL 252
>UNIPROTKB|Q7Y0W3 [details] [associations]
symbol:Q7Y0W3 "Two-component response regulator EHD1"
species:39946 "Oryza sativa Indica Group" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0048576 "positive regulation of short-day
photoperiodism, flowering" evidence=IMP] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009908 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
eggNOG:NOG265546 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AB092508
ProteinModelPortal:Q7Y0W3 SMR:Q7Y0W3 KEGG:dosa:Os10t0463400-01
Gramene:Q7Y0W3 HOGENOM:HOG000084878 GO:GO:0048576 Uniprot:Q7Y0W3
Length = 341
Score = 269 (99.8 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 67/206 (32%), Positives = 113/206 (54%)
Query: 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
+DLVI+D P +GL + +E+ +F +P ++M+S + +MK +A+GA +++KPV
Sbjct: 57 VDLVISDAFFPTEDGLLILQEVTSKF-GIPTVIMASSGDTNTVMKYVANGAFDFLLKPVR 115
Query: 61 PDALRNVWQYAVTSKKGKSIFTEEKSSLANGSSAEKISFLHDIVSGSSMIEEKESKTNSK 120
+ L N+WQ+ + K+ + K++ G+ EK I++ + T ++
Sbjct: 116 IEELSNIWQH-IFRKQ----MQDHKNNNMVGN-LEKPGHPPSILAMARATPATTRSTATE 169
Query: 121 RKASKRR---KDELEGENAAAPK-----KAKVVWTNSLHNRFLQAIRHITLEKAVPKKIL 172
+ +D++ N K+++ WT LH +F+ A+ H+ +KAVPKKIL
Sbjct: 170 ASLAPLENEVRDDMVNYNGEITDIRDLGKSRLTWTTQLHRQFIAAVNHLGEDKAVPKKIL 229
Query: 173 EFMNVPGLTRENVASHLQKYRIFLKR 198
M V LTRE VASHLQKYR+ LK+
Sbjct: 230 GIMKVKHLTREQVASHLQKYRMQLKK 255
>UNIPROTKB|Q7Y0W5 [details] [associations]
symbol:EHD1 "Two-component response regulator EHD1"
species:39947 "Oryza sativa Japonica Group" [GO:0048576 "positive
regulation of short-day photoperiodism, flowering" evidence=IMP]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:DP000086 EMBL:CM000147 GO:GO:0009908 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
InterPro:IPR017053 PIRSF:PIRSF036392 GO:GO:0048576 EMBL:AB092506
EMBL:AB092507 EMBL:AC027038 ProteinModelPortal:Q7Y0W5
Gramene:Q7Y0W5 eggNOG:KOG1601 Uniprot:Q7Y0W5
Length = 341
Score = 269 (99.8 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 67/206 (32%), Positives = 113/206 (54%)
Query: 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
+DLVI+D P +GL + +E+ +F +P ++M+S + +MK +A+GA +++KPV
Sbjct: 57 VDLVISDAFFPTEDGLLILQEVTSKF-GIPTVIMASSGDTNTVMKYVANGAFDFLLKPVR 115
Query: 61 PDALRNVWQYAVTSKKGKSIFTEEKSSLANGSSAEKISFLHDIVSGSSMIEEKESKTNSK 120
+ L N+WQ+ + K+ + K++ G+ EK I++ + T ++
Sbjct: 116 IEELSNIWQH-IFRKQ----MQDHKNNNMVGN-LEKPGHPPSILAMARATPATTRSTATE 169
Query: 121 RKASKRR---KDELEGENAAAPK-----KAKVVWTNSLHNRFLQAIRHITLEKAVPKKIL 172
+ +D++ N K+++ WT LH +F+ A+ H+ +KAVPKKIL
Sbjct: 170 ASLAPLENEVRDDMVNYNGEITDIRDLGKSRLTWTTQLHRQFIAAVNHLGEDKAVPKKIL 229
Query: 173 EFMNVPGLTRENVASHLQKYRIFLKR 198
M V LTRE VASHLQKYR+ LK+
Sbjct: 230 GIMKVKHLTREQVASHLQKYRMQLKK 255
>TAIR|locus:2155954 [details] [associations]
symbol:APRR4 "pseudo-response regulator 4" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS]
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 EMBL:AB016872 IPI:IPI00535768 RefSeq:NP_199735.1
UniGene:At.55447 ProteinModelPortal:Q9FJ16 SMR:Q9FJ16
EnsemblPlants:AT5G49240.1 GeneID:834984 KEGG:ath:AT5G49240
GeneFarm:4344 TAIR:At5g49240 eggNOG:NOG265546 HOGENOM:HOG000029456
InParanoid:Q9FJ16 KO:K14491 OMA:SEIGSEM PhylomeDB:Q9FJ16
ProtClustDB:CLSN2916474 Genevestigator:Q9FJ16 GermOnline:AT5G49240
Uniprot:Q9FJ16
Length = 292
Score = 265 (98.3 bits), Expect = 3.5e-22, P = 3.5e-22
Identities = 67/193 (34%), Positives = 110/193 (56%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
DL + ++ E + EI E + LP++++S DD + K + +GA Y++KP+ P
Sbjct: 89 DLAMIQVNNAEGDIFRFLSEIGSE-MDLPIIIISEDDSVKSVKKWMINGAADYLIKPIRP 147
Query: 62 DALRNVWQYAVTS-KKGKSIFTEEKSSLANGSSAEKISFLHDIVSGSSMIEEKESKTNSK 120
+ LR V+++ V ++ +S+ T E A ++ EK S + D S++ +SK +S
Sbjct: 148 EDLRIVFKHLVKKMRERRSVVTGE----AEKAAGEKSSSVGD----STIRNPNKSKRSSC 199
Query: 121 RKASKRRKDELEGEN---AAAPKKAKVVWTNSLHNRFLQAIRHITLEKAVPKKILEFMNV 177
+A +D + + A++ KK +VVW LH FL A+ + LE+AVPKKIL+ M V
Sbjct: 200 LEAEVNEEDRHDHNDRACASSAKKRRVVWDEELHQNFLNAVDFLGLERAVPKKILDVMKV 259
Query: 178 PGLTRENVASHLQ 190
++RENVASHLQ
Sbjct: 260 DYISRENVASHLQ 272
>TAIR|locus:2148348 [details] [associations]
symbol:BOA "AT5G59570" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0007623 "circadian rhythm" evidence=IMP]
[GO:0009909 "regulation of flower development" evidence=IMP]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634
EMBL:CP002688 GO:GO:0003677 GO:GO:0007623 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AB025604
GO:GO:0009909 HSSP:O49397 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:BT026065 EMBL:AK117348
EMBL:AB206577 IPI:IPI00538187 RefSeq:NP_200765.1 UniGene:At.29219
ProteinModelPortal:Q9LTH4 SMR:Q9LTH4 STRING:Q9LTH4
EnsemblPlants:AT5G59570.1 GeneID:836076 KEGG:ath:AT5G59570
TAIR:At5g59570 InParanoid:Q9LTH4 OMA:ERSRTIH PhylomeDB:Q9LTH4
ProtClustDB:CLSN2685121 Genevestigator:Q9LTH4 Uniprot:Q9LTH4
Length = 298
Score = 219 (82.2 bits), Expect = 3.5e-17, P = 3.5e-17
Identities = 55/151 (36%), Positives = 81/151 (53%)
Query: 87 SLANGSSA--EKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEG--ENAAAP--K 140
S N SS E + + V GS ++K+S +E + E+A+ K
Sbjct: 81 SSTNASSVMEEVVDRVESSVPGSDPKKQKKSDGGEAAAVEDSTAEEGDSGPEDASGKTSK 140
Query: 141 KAKVVWTNSLHNRFLQAIRHITLEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKRVA 200
+ ++VWT LH RF+ + H+ ++ AVPK I++ MNV GLTRENVASHLQKYR++LKR+
Sbjct: 141 RPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRI- 199
Query: 201 DDGINAALKNFNHRSSLASGRTSMMLQEVQD 231
G+ ++ L S T + Q QD
Sbjct: 200 -QGLTTEEDPYSSSDQLFSS-TPVPPQSFQD 228
>TAIR|locus:2175364 [details] [associations]
symbol:AT5G05090 "AT5G05090" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002688
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:AB005245 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AY093188
EMBL:BT006289 IPI:IPI00523871 RefSeq:NP_196128.1 UniGene:At.33034
ProteinModelPortal:Q9FF65 SMR:Q9FF65 PRIDE:Q9FF65
EnsemblPlants:AT5G05090.1 GeneID:830391 KEGG:ath:AT5G05090
TAIR:At5g05090 InParanoid:Q9FF65 OMA:MREEDSN PhylomeDB:Q9FF65
ProtClustDB:CLSN2716677 ArrayExpress:Q9FF65 Genevestigator:Q9FF65
Uniprot:Q9FF65
Length = 266
Score = 211 (79.3 bits), Expect = 2.5e-16, P = 2.5e-16
Identities = 43/99 (43%), Positives = 62/99 (62%)
Query: 105 SGSSMIEEKESKTNSKRKASKRRKDELEGENAAAPKKAKVVWTNSLHNRFLQAIRHITLE 164
SG + + + NS + + D E A K+ ++VWT LH RF+ A+ H+ ++
Sbjct: 48 SGQPLPQTTPPQPNSSAEIAG---DSTGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIK 104
Query: 165 KAVPKKILEFMNVPGLTRENVASHLQKYRIFLKRVADDG 203
AVPK I++ M+V GLTRENVASHLQKYR++LKR+ G
Sbjct: 105 NAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMKSGG 143
>TAIR|locus:2058445 [details] [associations]
symbol:MYBC1 "AT2G40970" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009409 "response to cold" evidence=IMP] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0009409 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AC004261
HSSP:O49397 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC002409 EMBL:AY072381
EMBL:BT000098 IPI:IPI00539516 PIR:T00761 RefSeq:NP_181630.1
UniGene:At.27776 ProteinModelPortal:O22210 SMR:O22210
EnsemblPlants:AT2G40970.1 GeneID:818697 KEGG:ath:AT2G40970
TAIR:At2g40970 eggNOG:NOG255246 HOGENOM:HOG000238691
InParanoid:O22210 OMA:RYEDSEY PhylomeDB:O22210
ProtClustDB:CLSN2913178 ArrayExpress:O22210 Genevestigator:O22210
Uniprot:O22210
Length = 248
Score = 206 (77.6 bits), Expect = 8.8e-16, P = 8.8e-16
Identities = 37/67 (55%), Positives = 52/67 (77%)
Query: 133 GENAAAPKKAKVVWTNSLHNRFLQAIRHITLEKAVPKKILEFMNVPGLTRENVASHLQKY 192
GE A K+ ++VWT LH RF+ A+ H+ ++ AVPK I++ M+V GLTRENVASHLQKY
Sbjct: 97 GEPARTLKRPRLVWTPQLHKRFVDAVGHLGIKNAVPKTIMQLMSVEGLTRENVASHLQKY 156
Query: 193 RIFLKRV 199
R++L+R+
Sbjct: 157 RLYLRRM 163
>TAIR|locus:2167639 [details] [associations]
symbol:GLK2 "AT5G44190" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=RCA;IMP;IDA] [GO:0009658 "chloroplast organization"
evidence=IMP] [GO:0009910 "negative regulation of flower
development" evidence=IGI] [GO:0010380 "regulation of chlorophyll
biosynthetic process" evidence=IGI] [GO:0006364 "rRNA processing"
evidence=RCA] [GO:0006417 "regulation of translation" evidence=RCA]
[GO:0009651 "response to salt stress" evidence=RCA] [GO:0009657
"plastid organization" evidence=RCA] [GO:0009737 "response to
abscisic acid stimulus" evidence=RCA] [GO:0009902 "chloroplast
relocation" evidence=RCA] [GO:0009965 "leaf morphogenesis"
evidence=RCA] [GO:0010027 "thylakoid membrane organization"
evidence=RCA] [GO:0010207 "photosystem II assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA] [GO:0042793
"transcription from plastid promoter" evidence=RCA]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045893 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 EMBL:AB005239
GO:GO:0009658 GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689
PROSITE:PS51293 GO:GO:0009910 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
HOGENOM:HOG000237698 EMBL:AB062490 EMBL:AY026773 EMBL:AY028368
EMBL:AY050386 EMBL:AY124819 IPI:IPI00535889 RefSeq:NP_199232.1
UniGene:At.19638 ProteinModelPortal:Q9FFH0 SMR:Q9FFH0 STRING:Q9FFH0
EnsemblPlants:AT5G44190.1 GeneID:834442 KEGG:ath:AT5G44190
TAIR:At5g44190 eggNOG:NOG271712 InParanoid:Q9FFH0 OMA:QEMEGNT
PhylomeDB:Q9FFH0 ProtClustDB:CLSN2916711 Genevestigator:Q9FFH0
Uniprot:Q9FFH0
Length = 386
Score = 209 (78.6 bits), Expect = 4.3e-14, P = 4.3e-14
Identities = 48/99 (48%), Positives = 60/99 (60%)
Query: 120 KRKASKRRKDELEGENAAAPKKAKVVWTNSLHNRFLQAIRHITLEKAVPKKILEFMNVPG 179
KRK K+ KD L EN KK KV WT LH +F+QA+ + ++KAVP +ILE MNV
Sbjct: 128 KRKG-KKSKDCLSDENDIK-KKPKVDWTPELHRKFVQAVEQLGVDKAVPSRILEIMNVKS 185
Query: 180 LTRENVASHLQKYRIFLKRVADDGINAALKNFNHRSSLA 218
LTR NVASHLQKYR K + AA N +++A
Sbjct: 186 LTRHNVASHLQKYRSHRKHLLAREAEAASWNLRRHATVA 224
>TAIR|locus:2103247 [details] [associations]
symbol:AT3G10760 "AT3G10760" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
EMBL:AC011708 Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 HOGENOM:HOG000238691 ProtClustDB:CLSN2716677
IPI:IPI00530545 RefSeq:NP_187687.1 UniGene:At.39869
ProteinModelPortal:Q9SG82 SMR:Q9SG82 PRIDE:Q9SG82
EnsemblPlants:AT3G10760.1 GeneID:820245 KEGG:ath:AT3G10760
TAIR:At3g10760 eggNOG:NOG312708 InParanoid:Q9SG82 OMA:FARWEEE
PhylomeDB:Q9SG82 Genevestigator:Q9SG82 Uniprot:Q9SG82
Length = 335
Score = 205 (77.2 bits), Expect = 6.5e-14, P = 6.5e-14
Identities = 43/97 (44%), Positives = 62/97 (63%)
Query: 108 SMIEEKESKTNSKRKASKRRKDELEG-----ENAAAPKKAKVVWTNSLHNRFLQAIRHIT 162
S ++ S+ NS + + D G E A K+ ++VWT LH RF+ A+ H+
Sbjct: 67 SQLQLPSSQANSSAEFAADSADLGSGGAAGDEPARTLKRPRLVWTPQLHKRFVDAVAHLG 126
Query: 163 LEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKRV 199
++ AVPK I++ M+V GLTRENVASHLQKYR++LKR+
Sbjct: 127 IKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRM 163
>UNIPROTKB|Q5Z5I4 [details] [associations]
symbol:GLK1 "Probable transcription factor GLK1"
species:39947 "Oryza sativa Japonica Group" [GO:0010638 "positive
regulation of organelle organization" evidence=IGI] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=IGI]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634
GO:GO:0045893 GO:GO:0003677 EMBL:AP008212 GO:GO:0006351
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 PROSITE:PS51293
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 EMBL:AP005688 EMBL:AK061946 EMBL:AK065184
EMBL:AK098909 EMBL:AK122161 RefSeq:NP_001057583.2 UniGene:Os.3340
ProteinModelPortal:Q5Z5I4 STRING:Q5Z5I4
EnsemblPlants:LOC_Os06g24070.1 GeneID:4340977 KEGG:osa:4340977
Gramene:Q5Z5I4 eggNOG:NOG283574 HOGENOM:HOG000237698 OMA:IDSLTRH
ProtClustDB:CLSN2696175 GO:GO:0010638 Uniprot:Q5Z5I4
Length = 455
Score = 207 (77.9 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 51/134 (38%), Positives = 74/134 (55%)
Query: 77 GKSIFTEEKSSLANGSSAEKISFLHD-------IVSGSSMIEEKESK----TNSKRKASK 125
G + EE ++ A G+ EK D + G++ +E K S T+S ++A
Sbjct: 108 GDVVVGEENAAFA-GAGEEKGGCNQDDDAGEANVDDGAAAVEAKSSSPSSTTSSSQEAES 166
Query: 126 RRKDELEGENAAAPKKAKVVWTNSLHNRFLQAIRHITLEKAVPKKILEFMNVPGLTRENV 185
R K +++ KKAKV WT LH RF+QA+ + ++KAVP +ILE M + LTR N+
Sbjct: 167 RHKSS--SKSSHGKKKAKVDWTPELHRRFVQAVEQLGIDKAVPSRILEIMGIDSLTRHNI 224
Query: 186 ASHLQKYRIFLKRV 199
ASHLQKYR K +
Sbjct: 225 ASHLQKYRSHRKHM 238
>TAIR|locus:2141020 [details] [associations]
symbol:APRR2 species:3702 "Arabidopsis thaliana"
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA;ISS] [GO:0000160 "phosphorelay signal transduction
system" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=RCA;TAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
EMBL:AL161547 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AL021889
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AB041531
EMBL:AF385725 EMBL:AY143963 IPI:IPI00524902 IPI:IPI00542892
PIR:T05088 RefSeq:NP_001078405.1 RefSeq:NP_001154250.1
RefSeq:NP_001190759.1 RefSeq:NP_567548.1 RefSeq:NP_849403.1
RefSeq:NP_849404.2 UniGene:At.25394 ProteinModelPortal:Q6LA43
SMR:Q6LA43 IntAct:Q6LA43 STRING:Q6LA43 EnsemblPlants:AT4G18020.1
EnsemblPlants:AT4G18020.2 EnsemblPlants:AT4G18020.3
EnsemblPlants:AT4G18020.6 GeneID:827527 KEGG:ath:AT4G18020
GeneFarm:4314 TAIR:At4g18020 eggNOG:NOG268152 HOGENOM:HOG000005909
InParanoid:Q6LA43 OMA:TIMISTD PhylomeDB:Q6LA43
ProtClustDB:CLSN2689492 Genevestigator:Q6LA43 GermOnline:AT4G18020
Uniprot:Q6LA43
Length = 535
Score = 169 (64.5 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 46/140 (32%), Positives = 73/140 (52%)
Query: 78 KSIFTEEKSSLANGSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENAA 137
K + EE+ E + + + S I +KE +T K+S + + G +
Sbjct: 239 KVVVKEERGDSEKEEEGETGDLISE-KTDSVDIHKKEDETKPINKSSGIKN--VSGNKTS 295
Query: 138 APKKAKVVWTNSLHNRFLQAIRHITLEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLK 197
+ KV WT LH +F+QA+ + +++A+P +ILE M V LTR NVASHLQK+R K
Sbjct: 296 ---RKKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVGTLTRHNVASHLQKFRQHRK 352
Query: 198 RVA--DDGINAALKNF-NHR 214
+ DD + +++ NHR
Sbjct: 353 NILPKDDHNHRWIQSRENHR 372
>TAIR|locus:2174063 [details] [associations]
symbol:RR23 "response regulator 23" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;TAS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=RCA;TAS] [GO:0007623 "circadian rhythm"
evidence=RCA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
EMBL:CP002688 GO:GO:0006355 GO:GO:0005622 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 IPI:IPI00547104
RefSeq:NP_201018.1 UniGene:At.55679 ProteinModelPortal:F4K554
SMR:F4K554 EnsemblPlants:AT5G62120.1 GeneID:836332
KEGG:ath:AT5G62120 OMA:KWTKPLQ PhylomeDB:F4K554 Uniprot:F4K554
Length = 145
Score = 116 (45.9 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 26/60 (43%), Positives = 41/60 (68%)
Query: 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
ID+VITD HMP +NG++L+K I+EEF +LPV+ D ++ + L A+ +M KP++
Sbjct: 19 IDVVITDYHMPGLNGVQLKKRIDEEFGNLPVI----DLYRNIEHEELFRRALCFMHKPIS 74
Score = 51 (23.0 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 140 KKAKVVWTNSLHNRFLQAIRHI 161
+K K+ WT L +RF+ A++ +
Sbjct: 118 EKPKLKWTKPLQHRFMSALKSL 139
>TAIR|locus:2205339 [details] [associations]
symbol:HRS1 "HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY
ROOT SHORTENING 1" species:3702 "Arabidopsis thaliana" [GO:0005634
"nucleus" evidence=ISM] [GO:0003677 "DNA binding" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0016036 "cellular response to
phosphate starvation" evidence=IMP] [GO:0080022 "primary root
development" evidence=IMP] [GO:0000041 "transition metal ion
transport" evidence=RCA] InterPro:IPR001005 InterPro:IPR009057
Pfam:PF00249 EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC011810
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0080022 GO:GO:0016036 HSSP:O49397
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 HOGENOM:HOG000237574 EMBL:AF367336 EMBL:AY124865
IPI:IPI00529437 PIR:F86267 RefSeq:NP_563926.1 UniGene:At.20366
ProteinModelPortal:Q9FX67 SMR:Q9FX67 STRING:Q9FX67
EnsemblPlants:AT1G13300.1 GeneID:837890 KEGG:ath:AT1G13300
TAIR:At1g13300 eggNOG:NOG274505 InParanoid:Q9FX67 OMA:TRDESMR
PhylomeDB:Q9FX67 ProtClustDB:CLSN2687791 Genevestigator:Q9FX67
Uniprot:Q9FX67
Length = 344
Score = 159 (61.0 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 34/92 (36%), Positives = 52/92 (56%)
Query: 108 SMIEEKESKTNSKRKASKRRKDELEGENAAAPKKAKVVWTNSLHNRFLQAIRHIT-LEKA 166
+M ++ + + + RK E E + K+ + W++ LH RFL A++H+ A
Sbjct: 149 TMTRDESMRKDPMVNGGEGRKREAEKDGGGGRKQRRC-WSSQLHRRFLNALQHLGGPHVA 207
Query: 167 VPKKILEFMNVPGLTRENVASHLQKYRIFLKR 198
PK+I EFM V GLT + V SHLQKYR+ +R
Sbjct: 208 TPKQIREFMKVDGLTNDEVKSHLQKYRLHTRR 239
>TAIR|locus:2045761 [details] [associations]
symbol:AT2G01060 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0006499 "N-terminal protein myristoylation"
evidence=RCA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA]
[GO:0016558 "protein import into peroxisome matrix" evidence=RCA]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 HOGENOM:HOG000239390
InterPro:IPR025756 InterPro:IPR017930 InterPro:IPR006447
Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC006837
EMBL:AF370550 EMBL:AY084725 EMBL:BT000013 IPI:IPI00544604
PIR:B84420 RefSeq:NP_178216.1 UniGene:At.24449
ProteinModelPortal:Q9SJW0 SMR:Q9SJW0 EnsemblPlants:AT2G01060.1
GeneID:814630 KEGG:ath:AT2G01060 TAIR:At2g01060 eggNOG:NOG329415
InParanoid:Q9SJW0 OMA:TNELHER PhylomeDB:Q9SJW0
ProtClustDB:CLSN2683513 ArrayExpress:Q9SJW0 Genevestigator:Q9SJW0
Uniprot:Q9SJW0
Length = 286
Score = 152 (58.6 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 36/111 (32%), Positives = 57/111 (51%)
Query: 133 GENAAAPKKAKVVWTNSLHNRFLQAIRHIT-LEKAVPKKILEFMNVPGLTRENVASHLQK 191
G N++ K ++ WT+ LH RF+ A+ + ++A PK +L M V GLT +V SHLQK
Sbjct: 7 GPNSSHASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQK 66
Query: 192 YRI--FLKRVADDGINAALKNFNHRSSLASGRTSMMLQEVQDYAQAIEKQL 240
YR+ +L + +G K S G + M + E ++K+L
Sbjct: 67 YRLAKYLPDSSSEGKKTDKKESGDMLSGLDGSSGMQITEALKLQMEVQKRL 117
>UNIPROTKB|Q74AX6 [details] [associations]
symbol:cheY40H-1 "Response receiver CheY associated with
MCPs of class 40H" species:243231 "Geobacter sulfurreducens PCA"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
RefSeq:NP_953272.2 ProteinModelPortal:Q74AX6 GeneID:2685646
KEGG:gsu:GSU2223 PATRIC:22027301 OMA:GANEYLV ProtClustDB:CLSK828765
BioCyc:GSUL243231:GH27-2170-MONOMER Uniprot:Q74AX6
Length = 121
Score = 134 (52.2 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 26/69 (37%), Positives = 48/69 (69%)
Query: 1 IDLVITDLHMPEMNGLELQKEI--NEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKP 58
+DL+ITD++MP++NGLEL + ++ + H+P+ ++S++ E K L+ GA Y+VKP
Sbjct: 47 LDLIITDINMPDINGLELVSFVRTSDNYRHIPLFIISTEGSERDREKGLSLGANEYLVKP 106
Query: 59 VNPDALRNV 67
+P L+++
Sbjct: 107 FDPARLQDL 115
>TIGR_CMR|GSU_2223 [details] [associations]
symbol:GSU_2223 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P06143 RefSeq:NP_953272.2 ProteinModelPortal:Q74AX6
GeneID:2685646 KEGG:gsu:GSU2223 PATRIC:22027301 OMA:GANEYLV
ProtClustDB:CLSK828765 BioCyc:GSUL243231:GH27-2170-MONOMER
Uniprot:Q74AX6
Length = 121
Score = 134 (52.2 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 26/69 (37%), Positives = 48/69 (69%)
Query: 1 IDLVITDLHMPEMNGLELQKEI--NEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKP 58
+DL+ITD++MP++NGLEL + ++ + H+P+ ++S++ E K L+ GA Y+VKP
Sbjct: 47 LDLIITDINMPDINGLELVSFVRTSDNYRHIPLFIISTEGSERDREKGLSLGANEYLVKP 106
Query: 59 VNPDALRNV 67
+P L+++
Sbjct: 107 FDPARLQDL 115
>TAIR|locus:2063746 [details] [associations]
symbol:AT2G03500 "AT2G03500" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC006284
HOGENOM:HOG000237574 EMBL:AY060559 EMBL:AY133630 EMBL:AK221662
IPI:IPI00544167 PIR:B84449 RefSeq:NP_027544.1 UniGene:At.27373
ProteinModelPortal:Q9ZQ85 SMR:Q9ZQ85 IntAct:Q9ZQ85
EnsemblPlants:AT2G03500.1 GeneID:814878 KEGG:ath:AT2G03500
TAIR:At2g03500 eggNOG:NOG301728 InParanoid:Q9ZQ85 OMA:QSYSMLL
PhylomeDB:Q9ZQ85 ProtClustDB:CLSN2687945 ArrayExpress:Q9ZQ85
Genevestigator:Q9ZQ85 Uniprot:Q9ZQ85
Length = 432
Score = 154 (59.3 bits), Expect = 8.1e-08, P = 8.1e-08
Identities = 40/126 (31%), Positives = 68/126 (53%)
Query: 81 FTEEKS--SLANGSSAEKISFLHDIVSGS-----SMIEEKESKTNSKRKASKRRKDELEG 133
F++E+S LA + +++S ++ +G SMI + N+ S + +
Sbjct: 168 FSKEQSLPELALSTEVKRVSPTNEHTNGQDGNDESMINNDNNYNNNNNNNSN--SNGVSS 225
Query: 134 ENAAAPKKAKVVWTNSLHNRFLQAIRHIT-LEKAVPKKILEFMNVPGLTRENVASHLQKY 192
+ + +KA+ W+ LH RF+QA++ + + A PK+I E M V GLT + V SHLQKY
Sbjct: 226 TTSQSNRKARRCWSPDLHRRFVQALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKY 285
Query: 193 RIFLKR 198
R+ +R
Sbjct: 286 RLHTRR 291
>UNIPROTKB|Q9KS62 [details] [associations]
symbol:VC_1398 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413
OMA:AGANFYL HSSP:P06143 PIR:F82205 RefSeq:NP_231041.1
ProteinModelPortal:Q9KS62 DNASU:2614030 GeneID:2614030
KEGG:vch:VC1398 PATRIC:20081860 ProtClustDB:CLSK794124
Uniprot:Q9KS62
Length = 124
Score = 131 (51.2 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 26/67 (38%), Positives = 44/67 (65%)
Query: 1 IDLVITDLHMPEMNGLELQKEIN--EEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKP 58
+DL + D++MP+M+G L +EI E +P +++S++ +ES + + GA YMVKP
Sbjct: 47 VDLFLVDINMPKMDGFTLVREIRCRPELAGIPTVMISTESQESDRQQGIHMGANLYMVKP 106
Query: 59 VNPDALR 65
VNP+ L+
Sbjct: 107 VNPEELQ 113
>TIGR_CMR|VC_1398 [details] [associations]
symbol:VC_1398 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413 OMA:AGANFYL
HSSP:P06143 PIR:F82205 RefSeq:NP_231041.1 ProteinModelPortal:Q9KS62
DNASU:2614030 GeneID:2614030 KEGG:vch:VC1398 PATRIC:20081860
ProtClustDB:CLSK794124 Uniprot:Q9KS62
Length = 124
Score = 131 (51.2 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 26/67 (38%), Positives = 44/67 (65%)
Query: 1 IDLVITDLHMPEMNGLELQKEIN--EEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKP 58
+DL + D++MP+M+G L +EI E +P +++S++ +ES + + GA YMVKP
Sbjct: 47 VDLFLVDINMPKMDGFTLVREIRCRPELAGIPTVMISTESQESDRQQGIHMGANLYMVKP 106
Query: 59 VNPDALR 65
VNP+ L+
Sbjct: 107 VNPEELQ 113
>TAIR|locus:2026863 [details] [associations]
symbol:AT1G68670 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009737 "response to abscisic acid stimulus" evidence=IMP]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002684
GO:GO:0009737 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AY063886
EMBL:AY091241 IPI:IPI00541260 RefSeq:NP_564938.1 UniGene:At.27154
ProteinModelPortal:Q8VZS3 SMR:Q8VZS3 IntAct:Q8VZS3
EnsemblPlants:AT1G68670.1 GeneID:843197 KEGG:ath:AT1G68670
TAIR:At1g68670 HOGENOM:HOG000237574 InParanoid:Q8VZS3 OMA:EHESSPE
PhylomeDB:Q8VZS3 ProtClustDB:CLSN2687960 ArrayExpress:Q8VZS3
Genevestigator:Q8VZS3 Uniprot:Q8VZS3
Length = 354
Score = 148 (57.2 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 46/152 (30%), Positives = 71/152 (46%)
Query: 59 VNPDALRNVWQYAVTSKKGKS-IFTE-EKSSLANG-SSAEKISFLHDIVSGSSMIEEKES 115
+NP R + V K KS F +K L A K++ + SS E
Sbjct: 130 LNPKEERVAKKAKVVEVKPKSGAFQPFQKRVLETDLQPAVKVASSMPATTTSSTTETCGG 189
Query: 116 KTNSKRKASKRRKDELEGENAAAPKKAKVVWTNSLHNRFLQAIRHIT-LEKAVPKKILEF 174
K++ + + R+ E + + +K + W+ LH RFL A++ + A PK+I +
Sbjct: 190 KSDLIKAGDEERRIEQQQSQSHTHRKQRRCWSPELHRRFLNALQQLGGSHVATPKQIRDH 249
Query: 175 MNVPGLTRENVASHLQKYRIFLKRVADDGINA 206
M V GLT + V SHLQKYR+ +R A + A
Sbjct: 250 MKVDGLTNDEVKSHLQKYRLHTRRPAATSVAA 281
>TAIR|locus:2151206 [details] [associations]
symbol:PRR7 "pseudo-response regulator 7" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
evidence=IMP;TAS] [GO:0010017 "red or far-red light signaling
pathway" evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0009266 "response to temperature stimulus" evidence=IGI]
[GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0009639 "response to red or far red light" evidence=RCA]
[GO:0042752 "regulation of circadian rhythm" evidence=RCA]
[GO:0048574 "long-day photoperiodism, flowering" evidence=RCA]
InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005739
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045892
GO:GO:0035556 GO:GO:0003677 GO:GO:0007623 GO:GO:0006351
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 EMBL:AB046954
EMBL:AL162973 EMBL:AY039943 EMBL:AY142560 IPI:IPI00520937
PIR:T48302 RefSeq:NP_568107.1 UniGene:At.20552
ProteinModelPortal:Q93WK5 SMR:Q93WK5 STRING:Q93WK5 PRIDE:Q93WK5
EnsemblPlants:AT5G02810.1 GeneID:831793 KEGG:ath:AT5G02810
GeneFarm:4348 TAIR:At5g02810 eggNOG:COG3437 HOGENOM:HOG000034018
InParanoid:Q93WK5 KO:K12129 OMA:HDERNIL PhylomeDB:Q93WK5
ProtClustDB:CLSN2917538 Genevestigator:Q93WK5 GermOnline:AT5G02810
GO:GO:0010017 GO:GO:0009266 Uniprot:Q93WK5
Length = 727
Score = 136 (52.9 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 45/145 (31%), Positives = 76/145 (52%)
Query: 1 IDLVITDLHMPEMNGLELQ-KEINEEFI-HLPVMVMSSDDRESVIMKSLASGAVFYMVKP 58
ID+V+T++ MP ++G+ L K +N + ++PV++MSS D ++ K L+ GAV ++VKP
Sbjct: 124 IDIVLTEVIMPYLSGIGLLCKILNHKSRRNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKP 183
Query: 59 VNPDALRNVWQYAVTSKKGKSIFTEEKSSLANGSSAEKISFLH-DIVSGSSMIEEKESKT 117
+ + L+ +WQ+ + S E + S + S D SGSS +E E+ +
Sbjct: 184 IRKNELKILWQHVWRRCQSSSGSGSESGTHQTQKSVKSKSIKKSDQDSGSS--DENENGS 241
Query: 118 NSKRKASKRRKDELEGENAAAPKKA 142
AS D G ++ KKA
Sbjct: 242 IGLN-ASDGSSDG-SGAQSSWTKKA 264
Score = 63 (27.2 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 29/119 (24%), Positives = 43/119 (36%)
Query: 407 AGAGN-EGATFHHLPLGYSSSPAGFAVGNEQEHTSVLPPLSLSQQQYCLGKKVENDFTFG 465
AG+ + + ++F LP + ++ A + + + E LPP C V N+ G
Sbjct: 546 AGSSSVKHSSFQPLPCDHHNNHASYNLVHVAERKK-LPP-------QCGSSNVYNETIEG 597
Query: 466 LMNDANASVNDDTAQPGRLGEGAXXXXXXXXXXXXXXXXQPQGDGEGALNPNIGSGSGS 524
N N SVN + G G G G+ GSGSGS
Sbjct: 598 NNNTVNYSVNGSVSGSGH-GSNGPYGSSNGMNAGGMNMGSDNGAGKNGNGDGSGSGSGS 655
Score = 55 (24.4 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 27/109 (24%), Positives = 42/109 (38%)
Query: 244 TSPFIPRYGRGISELNGNTSFGSIGLQSHNS-----LSHVG-------LLGVQDNFHQPF 291
T P P+ S ++SF + HN+ L HV G + +++
Sbjct: 536 TKPGAPKVSSAGSSSVKHSSFQPLPCDHHNNHASYNLVHVAERKKLPPQCGSSNVYNETI 595
Query: 292 FGNTTYPLYQANPGTTFGTGLIDMG----TNSFSCGGLSGGLMNGTNSN 336
GN Y N G+ G+G G +N + GG++ G NG N
Sbjct: 596 EGNNNTVNYSVN-GSVSGSGHGSNGPYGSSNGMNAGGMNMGSDNGAGKN 643
Score = 52 (23.4 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 44/192 (22%), Positives = 70/192 (36%)
Query: 272 HNSLSHVGLLGVQDNFHQPFFGNTTYPLYQANPGT--TFGTGLIDMGTNSFSCGGLSGGL 329
HN SHVG +NF +TT PG G + +SF L
Sbjct: 513 HNHRSHVG----SNNFDM---SSTTENNAFTKPGAPKVSSAGSSSVKHSSFQ--PLPCDH 563
Query: 330 MNGTNSNQIFH--QKSKLRPDPYDNNTGASSLKGFGASGLEKMWTINNNPYLNYAGIRLK 387
N S + H ++ KL P +N +++G + +++N + + G
Sbjct: 564 HNNHASYNLVHVAERKKLPPQCGSSNVYNETIEG---NNNTVNYSVNGSVSGSGHGSNGP 620
Query: 388 NDGDQLVGAGEVGLNVKGDAGAGNEGATFHHLPLGYSSSPAGFAVGNE-QEHTSVLPPLS 446
+ AG G+N+ D GAG G G S A N+ + + L
Sbjct: 621 YGSSNGMNAG--GMNMGSDNGAGKNG-NGDGSGSGSGSGSGNLADENKISQREAALTKFR 677
Query: 447 LSQQQYCLGKKV 458
+++ C KKV
Sbjct: 678 QKRKERCFRKKV 689
>UNIPROTKB|Q3ADA5 [details] [associations]
symbol:cheY2 "Chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_359879.1
ProteinModelPortal:Q3ADA5 STRING:Q3ADA5 GeneID:3726250
KEGG:chy:CHY_1032 PATRIC:21275199 OMA:AGANFYL
BioCyc:CHYD246194:GJCN-1031-MONOMER Uniprot:Q3ADA5
Length = 118
Score = 125 (49.1 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 23/63 (36%), Positives = 42/63 (66%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
DL+ D++MP+M+G ++ E + LPV+++S++ +E +K L +GA Y+VKPV P
Sbjct: 46 DLMTVDVNMPKMDGYTFVYKVREMGVSLPVILISTESKEHDKLKGLQAGATLYLVKPVLP 105
Query: 62 DAL 64
+ +
Sbjct: 106 EQI 108
>TIGR_CMR|CHY_1032 [details] [associations]
symbol:CHY_1032 "chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0006935 "chemotaxis" evidence=ISS] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0005622
GO:GO:0006935 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_359879.1
ProteinModelPortal:Q3ADA5 STRING:Q3ADA5 GeneID:3726250
KEGG:chy:CHY_1032 PATRIC:21275199 OMA:AGANFYL
BioCyc:CHYD246194:GJCN-1031-MONOMER Uniprot:Q3ADA5
Length = 118
Score = 125 (49.1 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 23/63 (36%), Positives = 42/63 (66%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
DL+ D++MP+M+G ++ E + LPV+++S++ +E +K L +GA Y+VKPV P
Sbjct: 46 DLMTVDVNMPKMDGYTFVYKVREMGVSLPVILISTESKEHDKLKGLQAGATLYLVKPVLP 105
Query: 62 DAL 64
+ +
Sbjct: 106 EQI 108
>TAIR|locus:2044376 [details] [associations]
symbol:PRR9 "pseudo-response regulator 9" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
evidence=IMP;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009266 "response to temperature stimulus" evidence=IGI]
[GO:0010017 "red or far-red light signaling pathway" evidence=IMP]
[GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0007623 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034018
GO:GO:0010017 GO:GO:0009266 EMBL:AB046953 EMBL:AF272040
EMBL:AC005310 EMBL:AY099676 EMBL:AY128856 IPI:IPI00545462
PIR:T02680 RefSeq:NP_566085.1 UniGene:At.1675 UniGene:At.65052
ProteinModelPortal:Q8L500 SMR:Q8L500 STRING:Q8L500 PRIDE:Q8L500
EnsemblPlants:AT2G46790.1 GeneID:819292 KEGG:ath:AT2G46790
GeneFarm:4360 TAIR:At2g46790 eggNOG:COG0745 InParanoid:Q8L500
KO:K12128 OMA:HEACKNI PhylomeDB:Q8L500 ProtClustDB:CLSN2688972
Genevestigator:Q8L500 GermOnline:AT2G46790 Uniprot:Q8L500
Length = 468
Score = 138 (53.6 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 25/72 (34%), Positives = 48/72 (66%)
Query: 1 IDLVITDLHMPEMNGLELQKEI--NEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKP 58
IDL++T+L +P ++G L + +E ++PV++MSS D +++K + GA Y++KP
Sbjct: 83 IDLILTELDLPSISGFALLALVMEHEACKNIPVIMMSSQDSIKMVLKCMLRGAADYLIKP 142
Query: 59 VNPDALRNVWQY 70
+ + L+N+WQ+
Sbjct: 143 MRKNELKNLWQH 154
Score = 54 (24.1 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 24/112 (21%), Positives = 48/112 (42%)
Query: 72 VTSKKGKSIFTEEKSSLANGSSAEKISFLHDIVSGSSM-----IEEKESKTNSKR-KASK 125
VTS +G + + + ++ + S + + L V+ +E K SK +A
Sbjct: 326 VTSDQGSATTSSNQENIGSSSVSFRNQVLQSTVTNQKQDSPIPVESNREKAASKEVEAGS 385
Query: 126 RRKDE-LEGENAAA--PKK---AKVVWTNSLHNRFLQAIRHITLEKAVPKKI 171
+ +E + G++++ PK+ AK W+ S L R ++ KK+
Sbjct: 386 QSTNEGIAGQSSSTEKPKEEESAKQRWSRSQREAALMKFRLKRKDRCFDKKV 437
>TAIR|locus:2148720 [details] [associations]
symbol:PHL1 "AT5G29000" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
HSSP:O49397 InterPro:IPR025756 InterPro:IPR017930
InterPro:IPR006447 Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294
EMBL:AC018632 EMBL:BT002344 EMBL:AY085154 IPI:IPI00527102
IPI:IPI00527253 IPI:IPI00891441 RefSeq:NP_001078629.1
RefSeq:NP_001119299.1 RefSeq:NP_568512.3 RefSeq:NP_851090.1
UniGene:At.26183 ProteinModelPortal:Q8GUN5 SMR:Q8GUN5 PRIDE:Q8GUN5
EnsemblPlants:AT5G29000.2 GeneID:833026 KEGG:ath:AT5G29000
TAIR:At5g29000 eggNOG:NOG275266 InParanoid:Q8GUN5 OMA:DSSSHNP
PhylomeDB:Q8GUN5 ProtClustDB:CLSN2680328 Genevestigator:Q8GUN5
Uniprot:Q8GUN5
Length = 413
Score = 146 (56.5 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 31/81 (38%), Positives = 50/81 (61%)
Query: 117 TNSKRKASKRRKDELEGENAA---APKKAKVVWTNSLHNRFLQAIRHIT-LEKAVPKKIL 172
T ++++ +D+L G N++ A K ++ WT LH F++A+ + E+A PK +L
Sbjct: 204 TANQQQQMVSSEDQLSGRNSSSSVATSKQRMRWTPELHEAFVEAVNQLGGSERATPKAVL 263
Query: 173 EFMNVPGLTRENVASHLQKYR 193
+ +N PGLT +V SHLQKYR
Sbjct: 264 KLLNNPGLTIYHVKSHLQKYR 284
>UNIPROTKB|Q4GZK8 [details] [associations]
symbol:rr3 "Type A response regulator 3" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0005737
GO:GO:0009735 GO:GO:0006355 GO:GO:0035556 GO:GO:0007623
GO:GO:0010114 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 EMBL:CM000127 EMBL:AJ938072
STRING:Q4GZK8 Uniprot:Q4GZK8
Length = 131
Score = 124 (48.7 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 25/63 (39%), Positives = 40/63 (63%)
Query: 1 IDLVITDLHMPEMNGLELQKEINE--EFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKP 58
+ ++ITD MPEM G +L K + E E +PV++MSS++ + I + L GA +++KP
Sbjct: 56 VHMIITDYCMPEMTGFDLLKRVKESAELKEIPVVLMSSENSPTRIRRCLEEGAEDFLIKP 115
Query: 59 VNP 61
V P
Sbjct: 116 VRP 118
>TIGR_CMR|CJE_1261 [details] [associations]
symbol:CJE_1261 "chemotaxis protein CheY" species:195099
"Campylobacter jejuni RM1221" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413
OMA:DVLITDW ProtClustDB:CLSK872349 RefSeq:YP_179249.1
ProteinModelPortal:Q5HTY6 STRING:Q5HTY6 GeneID:3231768
KEGG:cjr:CJE1261 PATRIC:20044318
BioCyc:CJEJ195099:GJC0-1287-MONOMER Uniprot:Q5HTY6
Length = 130
Score = 124 (48.7 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 23/67 (34%), Positives = 46/67 (68%)
Query: 1 IDLVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKP 58
+ ++ITD +MPEMNGLEL K++ E + +P+++++++ ++ ++ +L +G Y+VKP
Sbjct: 47 VKVLITDWNMPEMNGLELVKKVRAEKKYEDMPIIMVTTEGGKAEVITALKAGVNNYIVKP 106
Query: 59 VNPDALR 65
P L+
Sbjct: 107 FTPQVLK 113
>TAIR|locus:2087740 [details] [associations]
symbol:AT3G12730 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 HOGENOM:HOG000239390
InterPro:IPR025756 InterPro:IPR017930 InterPro:IPR006447
Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AY070764
EMBL:AY143916 IPI:IPI00519091 RefSeq:NP_187879.2 UniGene:At.28330
ProteinModelPortal:Q8VYI2 SMR:Q8VYI2 EnsemblPlants:AT3G12730.1
GeneID:820455 KEGG:ath:AT3G12730 TAIR:At3g12730 eggNOG:NOG317938
InParanoid:Q8VYI2 OMA:CETQEAS PhylomeDB:Q8VYI2
ProtClustDB:CLSN2917937 Genevestigator:Q8VYI2 Uniprot:Q8VYI2
Length = 235
Score = 137 (53.3 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 29/69 (42%), Positives = 39/69 (56%)
Query: 127 RKDELEGENAAAPKKAKVVWTNSLHNRFLQAIRHIT-LEKAVPKKILEFMNVPGLTRENV 185
R D G K ++ WT LH RF+ A+ H+ EKA PK I+ M V GLT ++
Sbjct: 9 RDDSSSGLVLTTDPKPRLRWTTELHERFVDAVTHLGGPEKATPKTIMRVMGVKGLTLYHL 68
Query: 186 ASHLQKYRI 194
SHLQK+R+
Sbjct: 69 KSHLQKFRL 77
>UNIPROTKB|P71403 [details] [associations]
symbol:cheY "Chemotaxis protein CheY homolog" species:85962
"Helicobacter pylori 26695" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
GO:GO:0046872 GO:GO:0006935 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AE000511
GenomeReviews:AE000511_GR GO:GO:0001539 KO:K03413 EMBL:X81897
EMBL:U97567 EMBL:AF021090 PIR:C64653 RefSeq:NP_207858.1
RefSeq:YP_006934983.1 PDB:3GWG PDB:3H1E PDB:3H1F PDB:3H1G
PDBsum:3GWG PDBsum:3H1E PDBsum:3H1F PDBsum:3H1G
ProteinModelPortal:P71403 DIP:DIP-3256N MINT:MINT-160671
GeneID:13870261 GeneID:899603 KEGG:heo:C694_05515 KEGG:hpy:HP1067
PATRIC:20593473 OMA:DVLITDW ProtClustDB:CLSK872349
EvolutionaryTrace:P71403 Uniprot:P71403
Length = 124
Score = 121 (47.7 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 22/65 (33%), Positives = 45/65 (69%)
Query: 3 LVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
++ITD +MPEMNGL+L K++ + F +P+++++++ ++ ++ +L +G Y+VKP
Sbjct: 49 VLITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFT 108
Query: 61 PDALR 65
P L+
Sbjct: 109 PQVLK 113
>TAIR|locus:2042927 [details] [associations]
symbol:AT2G38300 "AT2G38300" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:BT004973
EMBL:AK117689 IPI:IPI00540370 RefSeq:NP_181364.2 UniGene:At.46670
ProteinModelPortal:Q8GYE4 SMR:Q8GYE4 IntAct:Q8GYE4 STRING:Q8GYE4
PRIDE:Q8GYE4 EnsemblPlants:AT2G38300.1 GeneID:818410
KEGG:ath:AT2G38300 TAIR:At2g38300 eggNOG:NOG310127
HOGENOM:HOG000090767 InParanoid:Q8GYE4 OMA:KDEEDRT PhylomeDB:Q8GYE4
ProtClustDB:CLSN2918908 Genevestigator:Q8GYE4 Uniprot:Q8GYE4
Length = 340
Score = 141 (54.7 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 44/151 (29%), Positives = 71/151 (47%)
Query: 111 EEKESKTNSKRKASKRRKDELEGENAAAP----KKAKVVWTNSLHNRFLQAIRHIT-LEK 165
EE+E + + +S +E + + P K ++ WT LH RF++A+ + E+
Sbjct: 20 EEEEEEGEESKVSSNSTVEESDKKTKVRPYVRSKVPRLRWTPDLHLRFVRAVERLGGQER 79
Query: 166 AVPKKILEFMNVPGLTRENVASHLQKYRIFLKRVADDGINAALKNFNHRSSLASGRTSMM 225
A PK + + MN+ GL+ +V SHLQ YR K++ D G A+ H ++ R
Sbjct: 80 ATPKLVRQMMNIKGLSIAHVKSHLQMYRS--KKIDDQG--QAIAGHKHLFETSTDRNIYK 135
Query: 226 LQEVQDYAQAIEKQLQMRTSPFIPRYGRGIS 256
L ++ + SPF RYG IS
Sbjct: 136 LSQLPMFRGYNHNH----DSPF--RYGSKIS 160
>TAIR|locus:2085984 [details] [associations]
symbol:AT3G25790 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002686
EMBL:AB028607 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
HOGENOM:HOG000237574 ProtClustDB:CLSN2687791 IPI:IPI00546166
RefSeq:NP_566778.1 UniGene:At.37325 ProteinModelPortal:Q9LS00
SMR:Q9LS00 EnsemblPlants:AT3G25790.1 GeneID:822170
KEGG:ath:AT3G25790 TAIR:At3g25790 InParanoid:Q9LS00 OMA:AYKREIS
PhylomeDB:Q9LS00 Genevestigator:Q9LS00 Uniprot:Q9LS00
Length = 357
Score = 141 (54.7 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 36/109 (33%), Positives = 55/109 (50%)
Query: 93 SAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENAA--APKKAKVVWTNSL 150
S EK L +++ I ++ +K N+ K+ D G +K + W+ L
Sbjct: 150 SQEKTETLVELIK----INDEAAKKNNNIKSPVTTSDGGSGGGGGRRGQRKNRRCWSQEL 205
Query: 151 HNRFLQAIRHIT-LEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKR 198
H RFL A++ + A PK+I + M V GLT + V SHLQKYR+ +R
Sbjct: 206 HRRFLNALKQLGGPHVATPKQIRDIMKVDGLTNDEVKSHLQKYRLHARR 254
>TAIR|locus:2100880 [details] [associations]
symbol:AT3G04450 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0016556 "mRNA modification" evidence=RCA]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002686
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR025756 InterPro:IPR017930
InterPro:IPR006447 Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294
IPI:IPI00540345 RefSeq:NP_187095.2 UniGene:At.40835
ProteinModelPortal:F4J3P7 SMR:F4J3P7 PRIDE:F4J3P7
EnsemblPlants:AT3G04450.1 GeneID:819601 KEGG:ath:AT3G04450
OMA:WPDWADQ Uniprot:F4J3P7
Length = 442
Score = 142 (55.0 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 36/105 (34%), Positives = 56/105 (53%)
Query: 141 KAKVVWTNSLHNRFLQAIRHIT-LEKAVPKKILEFMNVPGLTRENVASHLQKYRI--FLK 197
K ++ WT LH F++AI + E+A PK +L+ +N PGLT +V SHLQKYR +
Sbjct: 238 KQRMRWTPELHEAFVEAINQLGGSERATPKAVLKLINSPGLTVYHVKSHLQKYRTARYKP 297
Query: 198 RVADDGINAALKNFNHRSSLASG--RTSMMLQEVQDYAQAIEKQL 240
++ D +KN + S +TS+ + E ++KQL
Sbjct: 298 ELSKDTEEPLVKNLKTIEDIKSLDLKTSIEITEALRLQMKVQKQL 342
>TAIR|locus:2172394 [details] [associations]
symbol:MYR1 "myb-related protein 1" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] InterPro:IPR001005 InterPro:IPR009057
Pfam:PF00249 EMBL:CP002688 GO:GO:0003677 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AB012246
HSSP:O49397 InterPro:IPR025756 InterPro:IPR017930
InterPro:IPR006447 Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294
IPI:IPI00538966 RefSeq:NP_197325.1 RefSeq:NP_974798.1
UniGene:At.7556 ProteinModelPortal:Q9FK47 SMR:Q9FK47
EnsemblPlants:AT5G18240.1 EnsemblPlants:AT5G18240.4 GeneID:831942
KEGG:ath:AT5G18240 TAIR:At5g18240 InParanoid:Q9FK47 OMA:LETHTRT
PhylomeDB:Q9FK47 ProtClustDB:CLSN2686543 Genevestigator:Q9FK47
Uniprot:Q9FK47
Length = 402
Score = 142 (55.0 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 32/98 (32%), Positives = 53/98 (54%)
Query: 99 FLHDIVSGSSMIEEKESKTNSKRKASKRRKDELE-GENAAAPKKAKVVWTNSLHNRFLQA 157
+ H+ G S++ +S+R R + G + K ++ WT LH RF++A
Sbjct: 2 YYHNQHQGKSILSSSRMPISSERHPFLRGNGTGDSGLILSTDAKPRLKWTPDLHERFVEA 61
Query: 158 IRHITL-EKAVPKKILEFMNVPGLTRENVASHLQKYRI 194
+ + +KA PK I++ M +PGLT ++ SHLQKYR+
Sbjct: 62 VNQLGGGDKATPKTIMKVMGIPGLTLYHLKSHLQKYRL 99
Score = 41 (19.5 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 20/93 (21%), Positives = 39/93 (41%)
Query: 283 VQDNFHQPFFG---NTTYPLYQAN---PGT-TFGTGLIDMGTNSFSCGGLSGGLMNGTNS 335
+++N ++P+ N P ++ PG + G GL + S + + N N
Sbjct: 306 LRENHNRPYLSTMVNNAEPRISSSRRSPGRLSIGVGLHEHRGRSSNNSEYTEERFNENNE 365
Query: 336 NQIF--HQKSKLRPDPYDNNTGASSLKGFGASG 366
+ H ++ L + +D N G + K F +G
Sbjct: 366 DCKLETHTRTALDLNTHDENYGTTRPKQFDLNG 398
Score = 39 (18.8 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 466 LMNDANASVNDDTAQPGRLGEG 487
++N+A ++ PGRL G
Sbjct: 318 MVNNAEPRISSSRRSPGRLSIG 339
>TAIR|locus:2102509 [details] [associations]
symbol:RR17 "response regulator 17" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=TAS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005739 GO:GO:0005634
GO:GO:0009536 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355
GO:GO:0006351 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 KO:K14492
EMBL:AF305722 EMBL:AL163972 IPI:IPI00540746 PIR:T49039
RefSeq:NP_567037.1 UniGene:At.5240 ProteinModelPortal:Q9FPR6
SMR:Q9FPR6 STRING:Q9FPR6 EnsemblPlants:AT3G56380.1 GeneID:824805
KEGG:ath:AT3G56380 GeneFarm:4130 TAIR:At3g56380 InParanoid:Q9FPR6
OMA:MEEELHV PhylomeDB:Q9FPR6 ProtClustDB:CLSN2917444
Genevestigator:Q9FPR6 GermOnline:AT3G56380 Uniprot:Q9FPR6
Length = 153
Score = 118 (46.6 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 26/61 (42%), Positives = 40/61 (65%)
Query: 1 IDLVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKP 58
++L+ITD MP M G EL K++ E +PV+++SS++ + I K LASGA +M KP
Sbjct: 76 VNLIITDYCMPGMTGFELLKKVKESSNLKEVPVVILSSENIPTRINKCLASGAQMFMQKP 135
Query: 59 V 59
+
Sbjct: 136 L 136
>UNIPROTKB|Q4GZK3 [details] [associations]
symbol:rr8 "Type A response regulator 8" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:AJ938077 ProteinModelPortal:Q4GZK3
STRING:Q4GZK3 KEGG:dosa:Os08t0376700-01 KEGG:dosa:Os08t0377200-01
Gramene:Q4GZK3 Uniprot:Q4GZK3
Length = 121
Score = 117 (46.2 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 1 IDLVITDLHMPEMNGLELQKEINE--EFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKP 58
+D++++D MP+M G L E+ + + HLPV++ SSD+ I K L GA Y++KP
Sbjct: 49 VDMIVSDYCMPDMTGYNLLMEVKKSPKLAHLPVVIASSDNIPERIRKCLDGGAKDYILKP 108
Query: 59 VNPDALRNVWQY 70
V + + +Y
Sbjct: 109 VKIVDVPRIMKY 120
>UNIPROTKB|Q74DM7 [details] [associations]
symbol:cheY34H-1 "Response receiver CheY associated with
MCPs of class 34H" species:243231 "Geobacter sulfurreducens PCA"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P08402
RefSeq:NP_952342.1 ProteinModelPortal:Q74DM7 GeneID:2688101
KEGG:gsu:GSU1289 PATRIC:22025351 OMA:FDVTEAC ProtClustDB:CLSK828284
BioCyc:GSUL243231:GH27-1257-MONOMER Uniprot:Q74DM7
Length = 121
Score = 117 (46.2 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 23/66 (34%), Positives = 44/66 (66%)
Query: 1 IDLVITDLHMPEMNGLELQKEI--NEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKP 58
+D+VITDL+MP ++G+ L K + N + P+++++++ +ES + A+GA ++VKP
Sbjct: 47 VDMVITDLNMPNLDGIGLIKGVRANPTYRFTPIVMLTTESQESRKQEGKAAGATGWIVKP 106
Query: 59 VNPDAL 64
P+ L
Sbjct: 107 FKPEQL 112
>UNIPROTKB|Q9KQD5 [details] [associations]
symbol:VC_2065 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413
OMA:GHYDFLV HSSP:P06143 PIR:C82123 RefSeq:NP_231697.1
ProteinModelPortal:Q9KQD5 SMR:Q9KQD5 DNASU:2613445 GeneID:2613445
KEGG:vch:VC2065 PATRIC:20083164 ProtClustDB:CLSK874661
Uniprot:Q9KQD5
Length = 130
Score = 117 (46.2 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 24/66 (36%), Positives = 42/66 (63%)
Query: 2 DLVITDLHMPEMNGLELQKEI--NEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPV 59
D V+TD +MP M G++L K I +EE HLPV++++++ + I+++ +G Y+VKP
Sbjct: 55 DFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPF 114
Query: 60 NPDALR 65
L+
Sbjct: 115 TAATLK 120
>TIGR_CMR|GSU_1289 [details] [associations]
symbol:GSU_1289 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P08402 RefSeq:NP_952342.1 ProteinModelPortal:Q74DM7
GeneID:2688101 KEGG:gsu:GSU1289 PATRIC:22025351 OMA:FDVTEAC
ProtClustDB:CLSK828284 BioCyc:GSUL243231:GH27-1257-MONOMER
Uniprot:Q74DM7
Length = 121
Score = 117 (46.2 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 23/66 (34%), Positives = 44/66 (66%)
Query: 1 IDLVITDLHMPEMNGLELQKEI--NEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKP 58
+D+VITDL+MP ++G+ L K + N + P+++++++ +ES + A+GA ++VKP
Sbjct: 47 VDMVITDLNMPNLDGIGLIKGVRANPTYRFTPIVMLTTESQESRKQEGKAAGATGWIVKP 106
Query: 59 VNPDAL 64
P+ L
Sbjct: 107 FKPEQL 112
>TIGR_CMR|VC_2065 [details] [associations]
symbol:VC_2065 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413 OMA:GHYDFLV
HSSP:P06143 PIR:C82123 RefSeq:NP_231697.1 ProteinModelPortal:Q9KQD5
SMR:Q9KQD5 DNASU:2613445 GeneID:2613445 KEGG:vch:VC2065
PATRIC:20083164 ProtClustDB:CLSK874661 Uniprot:Q9KQD5
Length = 130
Score = 117 (46.2 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 24/66 (36%), Positives = 42/66 (63%)
Query: 2 DLVITDLHMPEMNGLELQKEI--NEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPV 59
D V+TD +MP M G++L K I +EE HLPV++++++ + I+++ +G Y+VKP
Sbjct: 55 DFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPF 114
Query: 60 NPDALR 65
L+
Sbjct: 115 TAATLK 120
>TAIR|locus:2031210 [details] [associations]
symbol:AT1G25550 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0010167 "response to nitrate" evidence=RCA] [GO:0015706
"nitrate transport" evidence=RCA] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 EMBL:CP002684 GO:GO:0003677
GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
HSSP:O49397 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 HOGENOM:HOG000237574
ProtClustDB:CLSN2687960 EMBL:AF326890 EMBL:AF339707 EMBL:AF372906
EMBL:BT002674 IPI:IPI00533337 RefSeq:NP_564236.1 UniGene:At.25159
ProteinModelPortal:Q9FPE8 SMR:Q9FPE8 IntAct:Q9FPE8 STRING:Q9FPE8
PRIDE:Q9FPE8 EnsemblPlants:AT1G25550.1 GeneID:839142
KEGG:ath:AT1G25550 TAIR:At1g25550 InParanoid:Q9FPE8 OMA:ECSERTT
PhylomeDB:Q9FPE8 ArrayExpress:Q9FPE8 Genevestigator:Q9FPE8
Uniprot:Q9FPE8
Length = 344
Score = 137 (53.3 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 33/99 (33%), Positives = 52/99 (52%)
Query: 117 TNSKRKASKRRKDELEGENAAAPKKAKVVWTNSLHNRFLQAIRHIT-LEKAVPKKILEFM 175
T+S + K+ E + + + +K + W+ LH RFL A++ + A PK+I + M
Sbjct: 185 TSSTAETVGGGKEFEEQKQSHSNRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRDLM 244
Query: 176 NVPGLTRENVASHLQKYRIFLKRVADDGINAALKNFNHR 214
V GLT + V SHLQKYR+ +R A + +N R
Sbjct: 245 KVDGLTNDEVKSHLQKYRLHTRRPATPVVRTGGENPQQR 283
>TAIR|locus:2095933 [details] [associations]
symbol:MYR2 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002686
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 HSSP:O49397 HOGENOM:HOG000239390 InterPro:IPR025756
InterPro:IPR017930 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC011698
ProtClustDB:CLSN2686543 IPI:IPI00524229 RefSeq:NP_001118567.1
UniGene:At.40915 ProteinModelPortal:Q9SQQ9 SMR:Q9SQQ9
EnsemblPlants:AT3G04030.3 GeneID:819558 KEGG:ath:AT3G04030
TAIR:At3g04030 InParanoid:Q9SQQ9 OMA:HITSERH PhylomeDB:Q9SQQ9
Genevestigator:Q9SQQ9 Uniprot:Q9SQQ9
Length = 394
Score = 138 (53.6 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 25/55 (45%), Positives = 38/55 (69%)
Query: 141 KAKVVWTNSLHNRFLQAIRHIT-LEKAVPKKILEFMNVPGLTRENVASHLQKYRI 194
K ++ WT LH RF++A+ + +KA PK I++ M +PGLT ++ SHLQKYR+
Sbjct: 45 KPRLKWTPDLHERFIEAVNQLGGADKATPKTIMKVMGIPGLTLYHLKSHLQKYRL 99
>UNIPROTKB|Q4KG39 [details] [associations]
symbol:cheY "Chemotaxis protein CheY" species:220664
"Pseudomonas protegens Pf-5" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0005622 GO:GO:0006935
EMBL:CP000076 GenomeReviews:CP000076_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K03413 OMA:FGFVISD RefSeq:YP_258794.1
ProteinModelPortal:Q4KG39 SMR:Q4KG39 STRING:Q4KG39 GeneID:3477601
KEGG:pfl:PFL_1668 PATRIC:19872565 ProtClustDB:CLSK715044
BioCyc:PFLU220664:GIX8-1676-MONOMER Uniprot:Q4KG39
Length = 123
Score = 116 (45.9 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 22/67 (32%), Positives = 44/67 (65%)
Query: 1 IDLVITDLHMPEMNGLELQKEI--NEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKP 58
ID ++TD +MP M G++L + + +E+ HLPV++++++ + I+++ +G Y+VKP
Sbjct: 46 IDFLVTDWNMPGMTGIDLLRHVRADEKLKHLPVLMVTAEAKREQIIEAAQAGVNGYVVKP 105
Query: 59 VNPDALR 65
AL+
Sbjct: 106 FTAQALK 112
>TIGR_CMR|GSU_0104 [details] [associations]
symbol:GSU_0104 "response regulator, putative"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 HSSP:P10957 RefSeq:NP_951166.1
ProteinModelPortal:Q74GY9 GeneID:2688136 KEGG:gsu:GSU0104
PATRIC:22022954 OMA:NVAVARD ProtClustDB:CLSK309460
BioCyc:GSUL243231:GH27-65-MONOMER Uniprot:Q74GY9
Length = 129
Score = 116 (45.9 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 24/64 (37%), Positives = 40/64 (62%)
Query: 3 LVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
LV+ DL +P+MNGLE+ + I E H PV+V+SS E+ ++K G + Y+ KP++
Sbjct: 55 LVLLDLKLPKMNGLEVLRTIRSEERTRHTPVIVISSSQEETDVVKCRELGVLAYLTKPID 114
Query: 61 PDAL 64
+ +
Sbjct: 115 GEKI 118
>TIGR_CMR|GSU_0403 [details] [associations]
symbol:GSU_0403 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
RefSeq:NP_951462.1 ProteinModelPortal:Q74G46 GeneID:2685717
KEGG:gsu:GSU0403 PATRIC:22023550 OMA:MEGKSID ProtClustDB:CLSK827806
BioCyc:GSUL243231:GH27-435-MONOMER Uniprot:Q74G46
Length = 120
Score = 116 (45.9 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 20/64 (31%), Positives = 42/64 (65%)
Query: 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
+DL+++D++MP M+GLE K+ P+++++++ E ++ ++++SGA + KP
Sbjct: 49 VDLILSDINMPNMDGLEFIKQARANGHKAPIVMITTEGGEDILKEAISSGASDSIKKPFT 108
Query: 61 PDAL 64
PD L
Sbjct: 109 PDQL 112
>TAIR|locus:2038957 [details] [associations]
symbol:AT2G20400 "AT2G20400" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009555 "pollen development" evidence=IMP] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0009555 GO:GO:0003677 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397
InterPro:IPR025756 InterPro:IPR017930 InterPro:IPR006447
Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:BT006119
EMBL:AK118313 IPI:IPI00521384 RefSeq:NP_179630.2 UniGene:At.43867
ProteinModelPortal:Q8GXC2 SMR:Q8GXC2 PaxDb:Q8GXC2 PRIDE:Q8GXC2
EnsemblPlants:AT2G20400.1 GeneID:816559 KEGG:ath:AT2G20400
TAIR:At2g20400 eggNOG:NOG265443 HOGENOM:HOG000064669
InParanoid:Q8GXC2 OMA:ANSMENR PhylomeDB:Q8GXC2
ProtClustDB:CLSN2918042 Genevestigator:Q8GXC2 Uniprot:Q8GXC2
Length = 397
Score = 137 (53.3 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 37/111 (33%), Positives = 55/111 (49%)
Query: 90 NGSSAEKI---SFLHDIVSGSSMIEEKESKTNSK---RKASKRRKDELEGENAAAPKKAK 143
N +SA K+ S I +++++ S + R S + NAAA K +
Sbjct: 174 NFNSASKVQQPSMQSQIQQPQAVLQQPSSCVELRPLDRTVSSNSNNNSNSNNAAAAAKGR 233
Query: 144 VVWTNSLHNRFLQAIRHIT-LEKAVPKKILEFMNVPGLTRENVASHLQKYR 193
+ WT LH F+ A+ + +A PK +L+ M V GLT +V SHLQKYR
Sbjct: 234 MRWTPELHEVFVDAVNQLGGSNEATPKGVLKHMKVEGLTIFHVKSHLQKYR 284
>TIGR_CMR|CJE_1664 [details] [associations]
symbol:CJE_1664 "DNA-binding response regulator"
species:195099 "Campylobacter jejuni RM1221" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 RefSeq:YP_179645.1 ProteinModelPortal:Q5HSU0
STRING:Q5HSU0 GeneID:3232292 KEGG:cjr:CJE1664 PATRIC:20045123
OMA:KRNICEL ProtClustDB:CLSK879286
BioCyc:CJEJ195099:GJC0-1694-MONOMER Uniprot:Q5HSU0
Length = 226
Score = 131 (51.2 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 27/74 (36%), Positives = 47/74 (63%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
DLVITD+ MP M+GL++ +EI E +P++V+S+ + +++S+ G Y++KPV+
Sbjct: 53 DLVITDIAMPIMDGLDMAREIKEISDDVPIVVLSAYSEKERLLRSIDIGIDKYLIKPVDI 112
Query: 62 DALRNVWQYAVTSK 75
+ L V Y + K
Sbjct: 113 EELFKVLDYLIGEK 126
>UNIPROTKB|Q9KSH9 [details] [associations]
symbol:VC_1277 "Transcriptional regulator, LuxR family"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000792 InterPro:IPR001789
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00196 PRINTS:PR00038
PROSITE:PS00622 PROSITE:PS50043 PROSITE:PS50110 SMART:SM00421
SMART:SM00448 GO:GO:0035556 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 SUPFAM:SSF46894 KO:K07684 HSSP:P10957 PIR:H82218
RefSeq:NP_230922.1 ProteinModelPortal:Q9KSH9 DNASU:2614731
GeneID:2614731 KEGG:vch:VC1277 PATRIC:20081634 OMA:VIRVVIA
ProtClustDB:CLSK874291 Uniprot:Q9KSH9
Length = 216
Score = 130 (50.8 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 31/86 (36%), Positives = 51/86 (59%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
D+V+ D+ MP MNG+E + I EE H V++++ D IM+ + +GA+ YM+K ++
Sbjct: 56 DVVLMDVSMPIMNGIEATRLIKEEVPHTKVLMLTMHDNREYIMQVMQAGAMGYMLKEIS- 114
Query: 62 DALRNVWQYAVTSKKGKSIFTEEKSS 87
AL+ V Q T +G + F E +S
Sbjct: 115 -ALKMV-QAIKTVHQGATYFCESTTS 138
>TIGR_CMR|VC_1277 [details] [associations]
symbol:VC_1277 "transcriptional regulator, LuxR family"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000792 InterPro:IPR001789
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00196 PRINTS:PR00038
PROSITE:PS00622 PROSITE:PS50043 PROSITE:PS50110 SMART:SM00421
SMART:SM00448 GO:GO:0035556 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 SUPFAM:SSF46894 KO:K07684 HSSP:P10957 PIR:H82218
RefSeq:NP_230922.1 ProteinModelPortal:Q9KSH9 DNASU:2614731
GeneID:2614731 KEGG:vch:VC1277 PATRIC:20081634 OMA:VIRVVIA
ProtClustDB:CLSK874291 Uniprot:Q9KSH9
Length = 216
Score = 130 (50.8 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 31/86 (36%), Positives = 51/86 (59%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
D+V+ D+ MP MNG+E + I EE H V++++ D IM+ + +GA+ YM+K ++
Sbjct: 56 DVVLMDVSMPIMNGIEATRLIKEEVPHTKVLMLTMHDNREYIMQVMQAGAMGYMLKEIS- 114
Query: 62 DALRNVWQYAVTSKKGKSIFTEEKSS 87
AL+ V Q T +G + F E +S
Sbjct: 115 -ALKMV-QAIKTVHQGATYFCESTTS 138
>TAIR|locus:2025911 [details] [associations]
symbol:ARR3 "response regulator 3" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;IDA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;IDA;TAS] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=TAS] [GO:0010114
"response to red light" evidence=IMP] [GO:0010161 "red light
signaling pathway" evidence=IMP] [GO:0007623 "circadian rhythm"
evidence=IMP] [GO:0042752 "regulation of circadian rhythm"
evidence=IGI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0007623 GO:GO:0006351 GO:GO:0042752 EMBL:AC007258
GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034820 KO:K14492 EMBL:AB008486 IPI:IPI00532280
PIR:T50853 RefSeq:NP_176202.1 UniGene:At.237
ProteinModelPortal:Q9ZWS9 SMR:Q9ZWS9 IntAct:Q9ZWS9 STRING:Q9ZWS9
EnsemblPlants:AT1G59940.1 GeneID:842288 KEGG:ath:AT1G59940
GeneFarm:4120 TAIR:At1g59940 eggNOG:COG3706 InParanoid:Q9ZWS9
OMA:RSEMIGI PhylomeDB:Q9ZWS9 ProtClustDB:CLSN2912722
Genevestigator:Q9ZWS9 GermOnline:AT1G59940 GO:GO:0010161
Uniprot:Q9ZWS9
Length = 231
Score = 129 (50.5 bits), Expect = 9.9e-06, P = 9.9e-06
Identities = 42/133 (31%), Positives = 66/133 (49%)
Query: 1 IDLVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKP 58
+DL+ITD MP M G EL K+I E F +PV++MSS++ + I + L GA +++KP
Sbjct: 88 VDLIITDYCMPGMTGYELLKKIKESTSFKEVPVVIMSSENVMTRIDRCLEEGAEDFLLKP 147
Query: 59 VNPDALRNVWQY-------AVTSKKGKSIFTEEKSSLANGSSAEKISFLHDIVSGSSMIE 111
V ++ + Y A K K L+ SS E + S SM++
Sbjct: 148 VKLADVKRLRSYLTRDVKVAAEGNKRKLTTPPPPPPLSATSSMESSD--STVESPLSMVD 205
Query: 112 EKESKTNSKRKAS 124
+++S T S A+
Sbjct: 206 DEDSLTMSPESAT 218
>TAIR|locus:2163198 [details] [associations]
symbol:TOC1 "TIMING OF CAB EXPRESSION 1" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA;TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS;TAS] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010031 "circumnutation" evidence=IMP] [GO:0006351
"transcription, DNA-dependent" evidence=TAS] [GO:0044212
"transcription regulatory region DNA binding" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0010629 "negative regulation of gene expression"
evidence=IDA] [GO:0009639 "response to red or far red light"
evidence=RCA] [GO:0042752 "regulation of circadian rhythm"
evidence=RCA] [GO:0048574 "long-day photoperiodism, flowering"
evidence=RCA] InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072
Pfam:PF06203 PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0007623 GO:GO:0003700 GO:GO:0006351
GO:GO:0010629 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AB041530 EMBL:AF272039 EMBL:AJ251086 EMBL:AB010073
EMBL:AY094393 EMBL:BT005816 IPI:IPI00517214 PIR:T52075 PIR:T52076
RefSeq:NP_200946.1 UniGene:At.21919 ProteinModelPortal:Q9LKL2
SMR:Q9LKL2 IntAct:Q9LKL2 STRING:Q9LKL2 EnsemblPlants:AT5G61380.1
GeneID:836259 KEGG:ath:AT5G61380 GeneFarm:4313 TAIR:At5g61380
eggNOG:NOG242953 HOGENOM:HOG000034017 InParanoid:Q9LKL2 KO:K12127
OMA:IPIIMMS PhylomeDB:Q9LKL2 ProtClustDB:CLSN2686914
Genevestigator:Q9LKL2 GermOnline:AT5G61380 GO:GO:0010031
Uniprot:Q9LKL2
Length = 618
Score = 122 (48.0 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 37/149 (24%), Positives = 75/149 (50%)
Query: 1 IDLVITDLHMPEMNGLELQKEI--NEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKP 58
ID+++ ++ +P G+++ + I +++ +PV++MS D V++K L GA Y+VKP
Sbjct: 65 IDIILAEIDLPMAKGMKMLRYITRDKDLRRIPVIMMSRQDEVPVVVKCLKLGAADYLVKP 124
Query: 59 VNPDALRNVWQYAVTSKKGKSIFTEEKSSLANGSSAEKISFLHDIVSGSSMIEEKESKTN 118
+ + L N+W + ++ + + EK+ L+ S D + S+ + ++
Sbjct: 125 LRTNELLNLWTHMW--RRRRMLGLAEKNMLSYDFDLVG-SDQSDPNTNSTNLFSDDTDDR 181
Query: 119 SKRKASKRRKDELEGEN----AAAPKKAK 143
S R + +R + EN A AP A+
Sbjct: 182 SLRSTNPQRGNLSHQENEWSVATAPVHAR 210
Score = 61 (26.5 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 30/131 (22%), Positives = 49/131 (37%)
Query: 165 KAVPKKILEFMNV--PGLTRENVASHLQKYRIF-LKRVADDGINAALKNFNHRSSLASGR 221
+A PK + N P L N + HL + + VA +GIN + R +
Sbjct: 321 RATPKSTVLRTNGQDPPLVNGNGSHHLHRGAAEKFQVVASEGINNTKQAHRSRGTEQYHS 380
Query: 222 TSMMLQEVQDYAQAIEKQLQMRTSPFIPRYGRGISELNGNTSFGSIGLQSHNSLSHVGLL 281
LQ Y ++E+ + TS + +GR E GN + + + S V
Sbjct: 381 QGETLQNGASYPHSLERSRTLPTS--MESHGRNYQE--GNMNIPQVAMNRSKDSSQVDGS 436
Query: 282 GVQDNFHQPFF 292
G P++
Sbjct: 437 GFSAPNAYPYY 447
Score = 50 (22.7 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 232 YAQAIEKQLQMRTSPFIPRYGRGISELNGNTSFGSIG 268
Y + Q+ M+++ +P+YG I N G G
Sbjct: 447 YMHGVMNQVMMQSAAMMPQYGHQIPHCQPNHPNGMTG 483
>TAIR|locus:2206415 [details] [associations]
symbol:APL "ALTERED PHLOEM DEVELOPMENT" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0010088 "phloem development"
evidence=IMP] [GO:0010089 "xylem development" evidence=IMP]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0010089 EMBL:AC007202 EMBL:AY045662 EMBL:AY143841
EMBL:AK316719 IPI:IPI00538563 IPI:IPI00542908 PIR:D96825
RefSeq:NP_565209.1 RefSeq:NP_849905.1 UniGene:At.23550 HSSP:O49397
ProteinModelPortal:Q9SAK5 SMR:Q9SAK5 IntAct:Q9SAK5 STRING:Q9SAK5
PRIDE:Q9SAK5 EnsemblPlants:AT1G79430.2 GeneID:844281
KEGG:ath:AT1G79430 TAIR:At1g79430 eggNOG:NOG261203
HOGENOM:HOG000239390 InParanoid:Q94AW3 OMA:CQTLAGE PhylomeDB:Q9SAK5
ProtClustDB:CLSN2689327 Genevestigator:Q9SAK5 GO:GO:0010088
InterPro:IPR025756 InterPro:IPR017930 InterPro:IPR006447
Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294 Uniprot:Q9SAK5
Length = 358
Score = 132 (51.5 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 35/112 (31%), Positives = 60/112 (53%)
Query: 141 KAKVVWTNSLHNRFLQAIRHIT-LEKAVPKKILEFMNVPGLTRENVASHLQKYRIFL--- 196
K ++ WT LH RF+ A+ + +KA PK I+ M V GLT ++ SHLQK+R+
Sbjct: 34 KPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPH 93
Query: 197 KRVAD----DGINAALKNFNHRSSLASGRTSMMLQEVQ-DYAQAIEKQLQMR 243
K D +G A+ + + +SG S + E+Q + + + +QL+++
Sbjct: 94 KEYGDHSTKEGSRASAMDIQRNVASSSGMMSRNMNEMQMEVQRRLHEQLEVQ 145
>TIGR_CMR|GSU_1117 [details] [associations]
symbol:GSU_1117 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 HSSP:P06143
RefSeq:NP_952170.1 ProteinModelPortal:Q74E47 GeneID:2686890
KEGG:gsu:GSU1117 PATRIC:22024996 OMA:ASNVIMI ProtClustDB:CLSK828188
BioCyc:GSUL243231:GH27-1119-MONOMER Uniprot:Q74E47
Length = 127
Score = 111 (44.1 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 20/67 (29%), Positives = 44/67 (65%)
Query: 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
+++++TD++MPEMNG+ +E+N+ F V+++++ ++++ GA Y+ KPV
Sbjct: 51 VNVIVTDINMPEMNGITFLRELNKSFPRSNVIMITAYGGVESYIEAMNLGAFEYINKPVK 110
Query: 61 PDALRNV 67
D L+++
Sbjct: 111 LDELKSI 117
>UNIPROTKB|Q4GZK4 [details] [associations]
symbol:rr7 "Type A response regulator 7" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 EMBL:AJ938076
ProteinModelPortal:Q4GZK4 KEGG:dosa:Os07t0449700-01 Gramene:Q4GZK4
Uniprot:Q4GZK4
Length = 206
Score = 125 (49.1 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 26/63 (41%), Positives = 41/63 (65%)
Query: 1 IDLVITDLHMPEMNGLELQKEINE--EFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKP 58
+ ++ITD MPEM G +L K+I E E +PV++MSS++ + I + L GA +++KP
Sbjct: 132 VSMIITDYWMPEMTGYDLLKKIKESSELKQIPVVIMSSENVPTRISRCLEEGAEDFLLKP 191
Query: 59 VNP 61
V P
Sbjct: 192 VRP 194
>TAIR|locus:2026739 [details] [associations]
symbol:AT1G69580 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0009736 "cytokinin mediated signaling pathway"
evidence=RCA] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
EMBL:CP002684 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HOGENOM:HOG000239390
InterPro:IPR025756 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 EMBL:AC021046 IPI:IPI00846148
RefSeq:NP_001077798.1 UniGene:At.52449 ProteinModelPortal:A8MSE5
SMR:A8MSE5 PRIDE:A8MSE5 EnsemblPlants:AT1G69580.2 GeneID:843294
KEGG:ath:AT1G69580 TAIR:At1g69580 eggNOG:NOG249461 OMA:MEINNNA
PhylomeDB:A8MSE5 ProtClustDB:CLSN2699064 ArrayExpress:A8MSE5
Genevestigator:A8MSE5 Uniprot:A8MSE5
Length = 337
Score = 131 (51.2 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 141 KAKVVWTNSLHNRFLQAIRHIT-LEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKRV 199
K ++ WT LH++F++A+ + KA PK +++ M +PGLT ++ SHLQKYR+
Sbjct: 34 KPRLKWTCDLHHKFIEAVNQLGGPNKATPKGLMKVMEIPGLTLYHLKSHLQKYRLGKSMK 93
Query: 200 ADDG---INAALKN 210
DD +++A +N
Sbjct: 94 FDDNKLEVSSASEN 107
>TIGR_CMR|GSU_1989 [details] [associations]
symbol:GSU_1989 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025944 PROSITE:PS00675
PROSITE:PS00688 RefSeq:NP_953038.1 ProteinModelPortal:Q74BQ2
GeneID:2686140 KEGG:gsu:GSU1989 PATRIC:22026841 OMA:IARSLHY
ProtClustDB:CLSK743130 BioCyc:GSUL243231:GH27-2007-MONOMER
Uniprot:Q74BQ2
Length = 444
Score = 126 (49.4 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 27/97 (27%), Positives = 53/97 (54%)
Query: 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
+D +ITDL MP +G++L + + E +PV+ +++ + ++ GA +Y +KP +
Sbjct: 47 VDAIITDLRMPGRDGMQLFEHVTEHLPDIPVIFLTAYGTVDSAVNAITRGAFYYFIKPPD 106
Query: 61 PDALRNVWQYAVTSKKGKSIFTEEKSSLANGSSAEKI 97
L+++ AV + K E + +A GS A++I
Sbjct: 107 YVKLKSMVARAVEQRALKREVAELRKRVAAGSGADRI 143
Score = 51 (23.0 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 26/111 (23%), Positives = 50/111 (45%)
Query: 80 IFTEEKSSLANGSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENAAAP 139
+F EK + + G+SA +I G+ ++E S + R E E E +
Sbjct: 212 LFGYEKGAFS-GASARRIGRFEAAADGTIFLDEISELELSLQAKLLRVLQEKEVERLGSN 270
Query: 140 KKAKVVWT--NSLHNRFLQAIRHITLEKAVPKKI-LEFMNVPGLT--RENV 185
+K KV + +S + ++ I T + + ++ + +NVP L RE++
Sbjct: 271 RKIKVNFRVISSTNRDLMREIAAGTFREDLYYRLNVVQLNVPSLRERREDI 321
>TAIR|locus:2089260 [details] [associations]
symbol:AT3G13040 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0015996 "chlorophyll catabolic process"
evidence=RCA] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
EMBL:CP002686 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR025756
InterPro:IPR017930 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AY050889 EMBL:AY096674
IPI:IPI00543771 RefSeq:NP_566442.1 RefSeq:NP_974298.1
UniGene:At.11993 ProteinModelPortal:Q949U2 SMR:Q949U2 STRING:Q949U2
PRIDE:Q949U2 EnsemblPlants:AT3G13040.1 EnsemblPlants:AT3G13040.2
GeneID:820490 KEGG:ath:AT3G13040 OMA:RIEEHAK
ProtClustDB:CLSN2688327 ArrayExpress:Q949U2 Genevestigator:Q949U2
Uniprot:Q949U2
Length = 449
Score = 134 (52.2 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 28/60 (46%), Positives = 41/60 (68%)
Query: 136 AAAPKKAKVVWTNSLHNRFLQAIRHIT-LEKAVPKKILEFMNVPGLTRENVASHLQKYRI 194
+AA +K+++ WT LH F++A+ + EKA PK + + MNV GLT +V SHLQKYR+
Sbjct: 236 SAANQKSRMRWTPELHESFVKAVIKLEGPEKATPKAVKKLMNVEGLTIYHVKSHLQKYRL 295
Score = 41 (19.5 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 72 VTSKKGKSIFTEEKSSLANGSSAEKISFLHDIVS 105
V S + SIFTE+ + +G ++ S L D ++
Sbjct: 116 VESARSPSIFTEDLGNQCDGGNSG--SLLKDFLN 147
>TAIR|locus:2157146 [details] [associations]
symbol:AT5G45580 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
EMBL:CP002688 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR025756
InterPro:IPR017930 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 PROSITE:PS51294 IPI:IPI00931042
RefSeq:NP_199371.2 UniGene:At.50506 ProteinModelPortal:F4KEK2
SMR:F4KEK2 PRIDE:F4KEK2 DNASU:834596 EnsemblPlants:AT5G45580.1
GeneID:834596 KEGG:ath:AT5G45580 OMA:YQIEVQR Uniprot:F4KEK2
Length = 264
Score = 126 (49.4 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 24/55 (43%), Positives = 37/55 (67%)
Query: 141 KAKVVWTNSLHNRFLQAIRHIT-LEKAVPKKILEFMNVPGLTRENVASHLQKYRI 194
K ++ WT LH+RF+ A+ + +KA PK +L+ M + GLT ++ SHLQKYR+
Sbjct: 7 KPRLRWTADLHDRFVDAVAKLGGADKATPKSVLKLMGLKGLTLYHLKSHLQKYRL 61
>TIGR_CMR|GSU_2581 [details] [associations]
symbol:GSU_2581 "sigma-54 dependent transcriptional
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025944 PROSITE:PS00688 HSSP:P06143 RefSeq:NP_953627.1
ProteinModelPortal:Q74A10 GeneID:2687775 KEGG:gsu:GSU2581
PATRIC:22028017 OMA:LTERIMA ProtClustDB:CLSK763211
BioCyc:GSUL243231:GH27-2558-MONOMER Uniprot:Q74A10
Length = 456
Score = 131 (51.2 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 27/72 (37%), Positives = 45/72 (62%)
Query: 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
+DL+I+DL M MNGLEL + E + ++PV+V+++ ++++ GA Y+ KP N
Sbjct: 48 VDLLISDLIMEGMNGLELLDRVRERYPNVPVIVVTARGSVESAVEAMRRGAYDYLAKPFN 107
Query: 61 PDALRNVWQYAV 72
P+ LR Q A+
Sbjct: 108 PEVLRITLQRAL 119
Score = 43 (20.2 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 17/70 (24%), Positives = 30/70 (42%)
Query: 367 LEKMWTINNNPYLNYAGIRLKNDGDQLVGAGEVGLNVKGDAGAGNE--GATFHHLPLGYS 424
L + +T + +N A +L ++ A + + + G++G+G E H G
Sbjct: 135 LRERFTFQSIVTVNPAMKKLLELAARVAAARQTTVAIYGESGSGKEVLARAIHFAGKGL- 193
Query: 425 SSPAGFAVGN 434
PAGF N
Sbjct: 194 --PAGFVAVN 201
>UNIPROTKB|Q4GZK5 [details] [associations]
symbol:rr6 "Type A response regulator 6" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0005737
GO:GO:0009735 GO:GO:0006355 GO:GO:0035556 GO:GO:0007623
GO:GO:0010114 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AJ938075 ProteinModelPortal:Q4GZK5 KEGG:dosa:Os04t0673300-01
Gramene:Q4GZK5 Uniprot:Q4GZK5
Length = 170
Score = 117 (46.2 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 24/63 (38%), Positives = 40/63 (63%)
Query: 1 IDLVITDLHMPEMNGLELQKEINE--EFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKP 58
++++ITD MP M G EL K + E + +PV++MSS++ + I + L GA +++KP
Sbjct: 97 VNMIITDYWMPGMTGYELLKRVKESSQLKEIPVVIMSSENVPNRISRCLEEGAEDFLLKP 156
Query: 59 VNP 61
V P
Sbjct: 157 VRP 159
>TAIR|locus:2139865 [details] [associations]
symbol:PHR1 "phosphate starvation response 1"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0016036 "cellular response to phosphate starvation"
evidence=IMP] [GO:0055063 "sulfate ion homeostasis" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=IEP] [GO:0071486 "cellular
response to high light intensity" evidence=IMP] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634 EMBL:CP002687
GO:GO:0003677 GO:GO:0007623 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0016036 HSSP:O49397
InterPro:IPR025756 InterPro:IPR017930 InterPro:IPR006447
Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294 GO:GO:0071486
HOGENOM:HOG000064669 EMBL:AY081290 EMBL:BT002187 EMBL:AJ310799
IPI:IPI00520685 RefSeq:NP_194590.2 UniGene:At.4525
ProteinModelPortal:Q94CL7 SMR:Q94CL7 PaxDb:Q94CL7 PRIDE:Q94CL7
EnsemblPlants:AT4G28610.1 GeneID:828979 KEGG:ath:AT4G28610
TAIR:At4g28610 eggNOG:NOG275307 InParanoid:Q94CL7 OMA:EKQCKSG
PhylomeDB:Q94CL7 ProtClustDB:CLSN2915055 Genevestigator:Q94CL7
GO:GO:0055063 Uniprot:Q94CL7
Length = 409
Score = 129 (50.5 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 43/116 (37%), Positives = 63/116 (54%)
Query: 141 KAKVVWTNSLHNRFLQAIRHIT-LEKAVPKKILEFMNVPGLTRENVASHLQKYRI--FLK 197
KA++ WT LH F++A+ + E+A PK +L+ M V GLT +V SHLQKYR +
Sbjct: 225 KARMRWTPELHEAFVEAVNSLGGSERATPKGVLKIMKVEGLTIYHVKSHLQKYRTARYRP 284
Query: 198 RVADDGI-NAALKNFNHRSSL----ASGRT-SMMLQ-EVQD--YAQA-IEKQLQMR 243
++ G L H +SL G T ++ LQ EVQ + Q I++ LQ+R
Sbjct: 285 EPSETGSPERKLTPLEHITSLDLKGGIGITEALRLQMEVQKQLHEQLEIQRNLQLR 340
>UNIPROTKB|Q9KQ67 [details] [associations]
symbol:VC_2135 "Sigma-54 dependent response regulator"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0030092 "regulation of flagellum assembly" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0035556 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539
GO:GO:0030092 KO:K10943 ProtClustDB:CLSK874687 HSSP:P41789
OMA:NWPNLPV PIR:G82114 RefSeq:NP_231766.1 ProteinModelPortal:Q9KQ67
DNASU:2613391 GeneID:2613391 KEGG:vch:VC2135 PATRIC:20083297
Uniprot:Q9KQ67
Length = 479
Score = 130 (50.8 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 43/143 (30%), Positives = 75/143 (52%)
Query: 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
+D+V++D+ M M GL L + I + + +LPV++M++ + ++ GA+ YM KP
Sbjct: 50 VDIVVSDVQMAGMGGLALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFA 109
Query: 61 PDALRN-VWQYA-VTSK-KGKSIFTEEKSSLANGSSAEKISFL--HDIVSGSSMIEEKES 115
P+ L N V +YA V S G ++ + KS L + A+K++ + ++ G S KE
Sbjct: 110 PEVLLNMVSRYAPVKSDDNGDAVVADTKS-LKLLALADKVAKTDANVMILGPSG-SGKEV 167
Query: 116 KTNSKRKASKRRKDELEGENAAA 138
+ AS R++ N AA
Sbjct: 168 MSRYIHNASPRKEGPFIAINCAA 190
>TIGR_CMR|VC_2135 [details] [associations]
symbol:VC_2135 "flagellar regulatory protein C" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0001539 "ciliary or
flagellar motility" evidence=ISS] [GO:0030092 "regulation of
flagellum assembly" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539
GO:GO:0030092 KO:K10943 ProtClustDB:CLSK874687 HSSP:P41789
OMA:NWPNLPV PIR:G82114 RefSeq:NP_231766.1 ProteinModelPortal:Q9KQ67
DNASU:2613391 GeneID:2613391 KEGG:vch:VC2135 PATRIC:20083297
Uniprot:Q9KQ67
Length = 479
Score = 130 (50.8 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 43/143 (30%), Positives = 75/143 (52%)
Query: 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
+D+V++D+ M M GL L + I + + +LPV++M++ + ++ GA+ YM KP
Sbjct: 50 VDIVVSDVQMAGMGGLALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFA 109
Query: 61 PDALRN-VWQYA-VTSK-KGKSIFTEEKSSLANGSSAEKISFL--HDIVSGSSMIEEKES 115
P+ L N V +YA V S G ++ + KS L + A+K++ + ++ G S KE
Sbjct: 110 PEVLLNMVSRYAPVKSDDNGDAVVADTKS-LKLLALADKVAKTDANVMILGPSG-SGKEV 167
Query: 116 KTNSKRKASKRRKDELEGENAAA 138
+ AS R++ N AA
Sbjct: 168 MSRYIHNASPRKEGPFIAINCAA 190
>DICTYBASE|DDB_G0282289 [details] [associations]
symbol:dhkD "histidine kinase D" species:44689
"Dictyostelium discoideum" [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0023014 "signal transduction by
phosphorylation" evidence=IEA] [GO:0016772 "transferase activity,
transferring phosphorus-containing groups" evidence=IEA]
[GO:0016310 "phosphorylation" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0007165 "signal transduction" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004871
"signal transducer activity" evidence=IEA] [GO:0000160
"phosphorelay signal transduction system" evidence=IEA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA]
[GO:0004673 "protein histidine kinase activity" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016301
"kinase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000014 InterPro:IPR000700
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50112
PROSITE:PS50113 SMART:SM00091 SMART:SM00387 SMART:SM00388
SMART:SM00448 InterPro:IPR005467 InterPro:IPR001610
dictyBase:DDB_G0282289 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
GO:GO:0035556 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0005622 GO:GO:0023014 eggNOG:COG2202 SMART:SM00086
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 EMBL:AF361475 EMBL:AF029704
RefSeq:XP_640257.1 HSSP:P0A5Z8 ProteinModelPortal:Q54SP4
EnsemblProtists:DDB0215384 GeneID:8623516 KEGG:ddi:DDB_G0282289
OMA:TIERCAS Uniprot:Q54SP4
Length = 1546
Score = 136 (52.9 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 40/132 (30%), Positives = 72/132 (54%)
Query: 2 DLVITDLHMPEMNGLELQKEI--NEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPV 59
DL++TD MP M+G E+ +++ +E+F ++P++++++ E++ +K L +G Y+ KP
Sbjct: 614 DLIVTDCMMPRMSGDEMVEQLRSDEQFDNIPILLLTAKADENLRIKLLQNGVSDYVNKPF 673
Query: 60 NPDALRNVWQYAVTSKKGKSIFTEEKSSLANGSSAEKISFLHDIVSG-SSMIEEKESKTN 118
+ + L +T KK K EE SS AN E I+ L + +++ E E + N
Sbjct: 674 SSEELVARVVNLMTMKKAKQFLQEELSS-ANTDLQELINQLTNKKRDLQTLVGELEKERN 732
Query: 119 SKRKASKRRKDE 130
+K KDE
Sbjct: 733 LLNNTNKS-KDE 743
>UNIPROTKB|Q4GZK2 [details] [associations]
symbol:rr9 "Type A response regulator 9" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0009735
GO:GO:0006355 GO:GO:0035556 GO:GO:0007623 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
EMBL:CM000136 EMBL:AJ938078 STRING:Q4GZK2 Uniprot:Q4GZK2
Length = 201
Score = 121 (47.7 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 38/125 (30%), Positives = 66/125 (52%)
Query: 1 IDLVITDLHMPEMNGLELQKEINEE-FIH-LPVMVMSSDDRESVIMKSLASGAVFYMVKP 58
++L+ITD MP M G +L K+I E ++ +PV++MSSD+ S I + L GA + +KP
Sbjct: 69 VNLIITDYCMPGMTGYDLLKKIKESSYLRDIPVVIMSSDNIPSRINRCLEEGADEFFLKP 128
Query: 59 VNPDALRNVWQYAVTSKKGKSIFTEEKSSLANGSSAEKISFLHDIVSGSSMIEEKESKTN 118
V + + + + S+ K + +E++ +N S + + S S+ S +
Sbjct: 129 VRLSDMSKLKPHILKSRC-KEHYQQEQNLQSNSESNNSSNPTSENSSSST------SSNS 181
Query: 119 SKRKA 123
KRKA
Sbjct: 182 HKRKA 186
>TIGR_CMR|SO_3209 [details] [associations]
symbol:SO_3209 "chemotaxis protein CheY" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 OMA:GHYDFLV
HSSP:P06143 RefSeq:NP_718764.1 ProteinModelPortal:Q8ECD4 SMR:Q8ECD4
GeneID:1170902 KEGG:son:SO_3209 PATRIC:23526102
ProtClustDB:CLSK907053 Uniprot:Q8ECD4
Length = 127
Score = 106 (42.4 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 22/66 (33%), Positives = 40/66 (60%)
Query: 2 DLVITDLHMPEMNGLELQKEI--NEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPV 59
D V+TD +MP M G++L K I ++ HLPV++++++ + I+ + +G Y+VKP
Sbjct: 51 DFVVTDWNMPGMQGIDLLKAIRADDSLKHLPVLMVTAEAKREQIIAAAQAGVNGYVVKPF 110
Query: 60 NPDALR 65
L+
Sbjct: 111 TAATLK 116
>TAIR|locus:2011286 [details] [associations]
symbol:ARR7 "response regulator 7" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;TAS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=RCA;IMP;TAS] [GO:0019827 "stem cell
maintenance" evidence=IMP] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010200 "response to chitin" evidence=IEP] [GO:0007623
"circadian rhythm" evidence=RCA] [GO:0010029 "regulation of seed
germination" evidence=RCA] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=RCA] [GO:0048831 "regulation of shoot
system development" evidence=RCA] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006355 GO:GO:0006351
GO:GO:0010200 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K14492
ProtClustDB:CLSN2914197 eggNOG:COG3706 EMBL:AB008490 EMBL:AC068602
IPI:IPI00536268 PIR:T50854 RefSeq:NP_173339.1 UniGene:At.238
ProteinModelPortal:Q9ZWS7 SMR:Q9ZWS7 IntAct:Q9ZWS7 STRING:Q9ZWS7
EnsemblPlants:AT1G19050.1 GeneID:838487 KEGG:ath:AT1G19050
GeneFarm:4124 TAIR:At1g19050 InParanoid:Q9ZWS7 OMA:LRISSCK
PhylomeDB:Q9ZWS7 Genevestigator:Q9ZWS7 GermOnline:AT1G19050
GO:GO:0019827 Uniprot:Q9ZWS7
Length = 206
Score = 121 (47.7 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 38/134 (28%), Positives = 70/134 (52%)
Query: 1 IDLVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKP 58
++L++TD MP ++G +L K+I E F +PV++MSS++ I + L GA +++KP
Sbjct: 79 VNLIVTDYSMPGLSGYDLLKKIKESSAFREVPVVIMSSENILPRIQECLKEGAEEFLLKP 138
Query: 59 VNPDALRNVWQYAVTSKKGKSIFTEEKSSLANGSSAEKISFLHDIVSGSSMIEEKESKTN 118
V ++ + Q + ++ E+ + + S+ K+ D + SS ++ K +
Sbjct: 139 VKLADVKRIKQLIMRNEA-------EECKILSHSNKRKLQ--EDSDTSSSSHDDTSIKDS 189
Query: 119 SKRKASKRRKDELE 132
S SKR K E E
Sbjct: 190 S---CSKRMKSESE 200
>TAIR|locus:2171427 [details] [associations]
symbol:KAN "KANADI" species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM;ISS;IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0009887 "organ morphogenesis" evidence=IMP]
[GO:0009956 "radial pattern formation" evidence=IMP] [GO:0010051
"xylem and phloem pattern formation" evidence=IMP] [GO:0010158
"abaxial cell fate specification" evidence=IMP] [GO:0048440 "carpel
development" evidence=IGI] [GO:0048481 "ovule development"
evidence=IGI] [GO:0009944 "polarity specification of
adaxial/abaxial axis" evidence=IGI] [GO:0009943 "adaxial/abaxial
axis specification" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
EMBL:AB005242 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009887 PROSITE:PS51293
GO:GO:0010051 GO:GO:0048481 HSSP:O49397 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 GO:GO:0010158 GO:GO:0009944
GO:GO:0009956 EMBL:AY030192 EMBL:AY037864 EMBL:AY048688
EMBL:BT026436 IPI:IPI00535955 RefSeq:NP_568334.1 UniGene:At.6466
UniGene:At.66763 ProteinModelPortal:Q93WJ9 SMR:Q93WJ9 IntAct:Q93WJ9
STRING:Q93WJ9 PRIDE:Q93WJ9 EnsemblPlants:AT5G16560.1 GeneID:831518
KEGG:ath:AT5G16560 TAIR:At5g16560 eggNOG:NOG330873
HOGENOM:HOG000241649 InParanoid:Q93WJ9 OMA:GINGNEV PhylomeDB:Q93WJ9
ProtClustDB:CLSN2917650 Genevestigator:Q93WJ9 Uniprot:Q93WJ9
Length = 403
Score = 120 (47.3 bits), Expect = 5.3e-05, Sum P(3) = 5.3e-05
Identities = 25/49 (51%), Positives = 33/49 (67%)
Query: 146 WTNSLHNRFLQAIRHIT-LEKAVPKKILEFMNVPGLTRENVASHLQKYR 193
WT+SLH RF+ A+ + E+A PK +LE M+V LT +V SHLQ YR
Sbjct: 224 WTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYR 272
Score = 48 (22.0 bits), Expect = 5.3e-05, Sum P(3) = 5.3e-05
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 326 SGGLMNGTNSNQIFHQKSK-LRPDPYDNN----TGASSLKGFGASGLEKMWTINNN 376
SG G N N++ HQ S R D + T SS + ++ + W ++NN
Sbjct: 287 SGEEEMGINGNEVHHQSSTDQRAQSDDTSLHQETDISSTQPRWSNSSRETWPLSNN 342
Score = 41 (19.5 bits), Expect = 5.3e-05, Sum P(3) = 5.3e-05
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 118 NSKRKASKRRKDELEGENAAA 138
N K S RR +LE N ++
Sbjct: 37 NESSKESSRRSSQLENNNRSS 57
>TIGR_CMR|GSU_1891 [details] [associations]
symbol:GSU_1891 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 Pfam:PF01966
PROSITE:PS50110 SMART:SM00448 SMART:SM00471 GO:GO:0006355
GO:GO:0035556 GO:GO:0046872 GO:GO:0008152 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081
Gene3D:1.10.3210.10 HOGENOM:HOG000266481 HSSP:P06143
RefSeq:NP_952940.1 ProteinModelPortal:Q74BY7 GeneID:2688472
KEGG:gsu:GSU1891 PATRIC:22026647 OMA:FATIRTH ProtClustDB:CLSK924546
BioCyc:GSUL243231:GH27-1919-MONOMER Uniprot:Q74BY7
Length = 379
Score = 127 (49.8 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 35/133 (26%), Positives = 69/133 (51%)
Query: 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
ID+VITD++MPEM G+E+ + I + +PV++M+ SV ++++ GA +++KP +
Sbjct: 51 IDIVITDINMPEMTGIEVLRAIRKSNPDVPVILMTGYAELSVAVEAIKQGAFDFIIKPYD 110
Query: 61 PDALRNVWQYAVTSKKGKSIFTEEKSSLANGSSAEKISFLHDIVSGSSMIEEKESKTNSK 120
P L + + + + I K+ L N + ++ L D + M++ + +
Sbjct: 111 PLYLFHAVEKGINYYRLLKIEKNYKAELEN-TVKQRTGELADTLQ---MLKNMSKEVVQR 166
Query: 121 RKASKRRKDELEG 133
A+ +DE G
Sbjct: 167 LTAAAELRDEDTG 179
>TIGR_CMR|CHY_1018 [details] [associations]
symbol:CHY_1018 "chemotaxis response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 OMA:PFQAPKV
RefSeq:YP_359865.1 ProteinModelPortal:Q3ADB9 SMR:Q3ADB9
STRING:Q3ADB9 GeneID:3728492 KEGG:chy:CHY_1018 PATRIC:21275169
BioCyc:CHYD246194:GJCN-1017-MONOMER Uniprot:Q3ADB9
Length = 121
Score = 105 (42.0 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 18/68 (26%), Positives = 45/68 (66%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
D+V D+ MPEM+G++ +EI + + +++ S+ +++++M+++ +GA+ ++VKP
Sbjct: 49 DVVTMDITMPEMDGIQAVREIKKIDPNAKIIMCSAMGQQALVMEAIQAGAIDFIVKPFQQ 108
Query: 62 DALRNVWQ 69
D + ++
Sbjct: 109 DRILQAFE 116
>TIGR_CMR|GSU_2212 [details] [associations]
symbol:GSU_2212 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
RefSeq:NP_953261.1 ProteinModelPortal:Q74AY7 GeneID:2687085
KEGG:gsu:GSU2212 PATRIC:22027279 OMA:SSAMRRQ ProtClustDB:CLSK924580
BioCyc:GSUL243231:GH27-2150-MONOMER Uniprot:Q74AY7
Length = 128
Score = 105 (42.0 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 22/69 (31%), Positives = 42/69 (60%)
Query: 1 IDLVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKP 58
IDL++TD++MP M+GL+L + + HLP+ +++++ ++LA GA Y+ KP
Sbjct: 49 IDLILTDINMPVMDGLKLVSLVRSDPSHRHLPIAIITTEGAAEDRERALALGANAYITKP 108
Query: 59 VNPDALRNV 67
+ + +V
Sbjct: 109 IQAGRVLSV 117
>TAIR|locus:2063141 [details] [associations]
symbol:AT2G40260 "AT2G40260" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC007020
HOGENOM:HOG000090767 IPI:IPI00530168 PIR:C84827 RefSeq:NP_181555.1
UniGene:At.53083 ProteinModelPortal:Q9SIZ5 SMR:Q9SIZ5 PRIDE:Q9SIZ5
EnsemblPlants:AT2G40260.1 GeneID:818618 KEGG:ath:AT2G40260
TAIR:At2g40260 eggNOG:NOG267620 InParanoid:Q9SIZ5 OMA:FRINSHE
PhylomeDB:Q9SIZ5 ProtClustDB:CLSN2913060 ArrayExpress:Q9SIZ5
Genevestigator:Q9SIZ5 Uniprot:Q9SIZ5
Length = 410
Score = 121 (47.7 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
Identities = 33/90 (36%), Positives = 51/90 (56%)
Query: 105 SGSSMIEEKESKTNSKRKASKRRKDELEGENAAAPKKAKVVWTNSLHNRFLQAIRHIT-L 163
S SS E+ES ++ + +K+ + N + K ++ WT LH FLQA+ +
Sbjct: 49 SPSSNSYEEESGSHHHDQ-NKKNGGSVRPYNRS--KTPRLRWTPELHICFLQAVERLGGP 105
Query: 164 EKAVPKKILEFMNVPGLTRENVASHLQKYR 193
++A PK +L+ MNV GL+ +V SHLQ YR
Sbjct: 106 DRATPKLVLQLMNVKGLSIAHVKSHLQMYR 135
Score = 49 (22.3 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
Identities = 16/53 (30%), Positives = 23/53 (43%)
Query: 324 GLSGGLMNGTNSNQIFHQKSKLRPDPYDNNTGASSLKGFGASGLEKMWTINNN 376
G+S ++N N F S +DNN A ++ S LE M T N +
Sbjct: 223 GVSNSILNDKNKTISFRINS--HEGVHDNNGVAGAVPRIHRSFLEGMKTFNKS 273
>TAIR|locus:2115070 [details] [associations]
symbol:AT4G37180 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002687
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 IPI:IPI00537470
RefSeq:NP_849513.1 UniGene:At.4657 ProteinModelPortal:F4JRB0
SMR:F4JRB0 PRIDE:F4JRB0 EnsemblPlants:AT4G37180.2 GeneID:829872
KEGG:ath:AT4G37180 OMA:SCRNDET Uniprot:F4JRB0
Length = 363
Score = 121 (47.7 bits), Expect = 8.0e-05, Sum P(2) = 8.0e-05
Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 140 KKAKVVWTNSLHNRFLQAIRHIT-LEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKR 198
K+ + W+ LH +F+ A+ + + A PK+I + M V GLT + V SHLQKYR+ +++
Sbjct: 216 KEQRRRWSQELHRKFVDALHRLGGPQVATPKQIRDLMKVDGLTNDEVKSHLQKYRMHIRK 275
Score = 47 (21.6 bits), Expect = 8.0e-05, Sum P(2) = 8.0e-05
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 22 INEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVW 68
+NEE + L V + + D + +AS F V+ P+ + W
Sbjct: 73 LNEEIVFLCVAIGALKDEARKGLSLMASNGKFDDVERAKPETDKKSW 119
>UNIPROTKB|Q3ADB1 [details] [associations]
symbol:cheY1 "Chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 RefSeq:YP_359873.1 ProteinModelPortal:Q3ADB1
STRING:Q3ADB1 GeneID:3728270 KEGG:chy:CHY_1026 PATRIC:21275187
OMA:GATAWIT BioCyc:CHYD246194:GJCN-1025-MONOMER Uniprot:Q3ADB1
Length = 120
Score = 104 (41.7 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 21/68 (30%), Positives = 42/68 (61%)
Query: 2 DLVITDLHMPEMNGLELQKEIN--EEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPV 59
DL+ITDL+MPEM+G+ +++ + PV+V++++ + + ++ +GA ++ KP
Sbjct: 47 DLIITDLNMPEMDGITFIQKVRALSNYKFTPVIVLTTESQAAKKEQARRAGATAWITKPF 106
Query: 60 NPDALRNV 67
P+ L V
Sbjct: 107 TPEQLLGV 114
>UNIPROTKB|Q48GG3 [details] [associations]
symbol:cheY2 "Chemotaxis protein CheY" species:264730
"Pseudomonas syringae pv. phaseolicola 1448A" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
GO:GO:0006935 GO:GO:0004871 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CP000058 GenomeReviews:CP000058_GR
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_275520.1
ProteinModelPortal:Q48GG3 SMR:Q48GG3 STRING:Q48GG3 GeneID:3558182
KEGG:psp:PSPPH_3362 PATRIC:19976130 OMA:GHYDFLV
ProtClustDB:CLSK642753 Uniprot:Q48GG3
Length = 124
Score = 104 (41.7 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 20/66 (30%), Positives = 42/66 (63%)
Query: 2 DLVITDLHMPEMNGLELQKEI--NEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPV 59
D ++TD +MP M G++L +++ +E LPV++++++ + I+++ +G Y+VKP
Sbjct: 47 DFLVTDWNMPGMTGIDLLRQVRADERLKSLPVLMVTAEAKREQIIEAAQAGVNGYVVKPF 106
Query: 60 NPDALR 65
AL+
Sbjct: 107 TAQALK 112
>UNIPROTKB|Q8EF67 [details] [associations]
symbol:cheY "Chemotaxis signal transduction system response
regulator CheY" species:211586 "Shewanella oneidensis MR-1"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
OMA:FDVTEAC RefSeq:NP_717723.1 ProteinModelPortal:Q8EF67
GeneID:1169863 KEGG:son:SO_2120 PATRIC:23523858
ProtClustDB:CLSK906601 Uniprot:Q8EF67
Length = 121
Score = 104 (41.7 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 21/65 (32%), Positives = 39/65 (60%)
Query: 2 DLVITDLHMPEMNGLELQKEIN--EEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPV 59
D ++TD +MP M+GL L K + F+ P+++++++ + + + A GA +MVKP
Sbjct: 48 DFILTDQNMPRMDGLTLIKSLRGMSAFMRTPIIMLTTEAGDDMKAQGKAVGATGWMVKPF 107
Query: 60 NPDAL 64
+P L
Sbjct: 108 DPQKL 112
>TIGR_CMR|CHY_1026 [details] [associations]
symbol:CHY_1026 "chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 RefSeq:YP_359873.1
ProteinModelPortal:Q3ADB1 STRING:Q3ADB1 GeneID:3728270
KEGG:chy:CHY_1026 PATRIC:21275187 OMA:GATAWIT
BioCyc:CHYD246194:GJCN-1025-MONOMER Uniprot:Q3ADB1
Length = 120
Score = 104 (41.7 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 21/68 (30%), Positives = 42/68 (61%)
Query: 2 DLVITDLHMPEMNGLELQKEIN--EEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPV 59
DL+ITDL+MPEM+G+ +++ + PV+V++++ + + ++ +GA ++ KP
Sbjct: 47 DLIITDLNMPEMDGITFIQKVRALSNYKFTPVIVLTTESQAAKKEQARRAGATAWITKPF 106
Query: 60 NPDALRNV 67
P+ L V
Sbjct: 107 TPEQLLGV 114
>TIGR_CMR|CPS_1520 [details] [associations]
symbol:CPS_1520 "chemotaxis protein CheY" species:167879
"Colwellia psychrerythraea 34H" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 OMA:LEANDIY
KO:K03413 RefSeq:YP_268262.1 ProteinModelPortal:Q485K3 SMR:Q485K3
STRING:Q485K3 GeneID:3522501 KEGG:cps:CPS_1520 PATRIC:21466247
BioCyc:CPSY167879:GI48-1601-MONOMER Uniprot:Q485K3
Length = 127
Score = 104 (41.7 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 21/66 (31%), Positives = 40/66 (60%)
Query: 2 DLVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPV 59
D V+TD +MP M G++L K I + H+PV++++++ ++ I+ + +G Y+VKP
Sbjct: 51 DFVVTDWNMPGMQGIDLLKAIRADANLSHIPVLLITAEAKKEQIIMAAQAGVNGYIVKPF 110
Query: 60 NPDALR 65
L+
Sbjct: 111 TAATLK 116
>TIGR_CMR|SO_2120 [details] [associations]
symbol:SO_2120 "chemotaxis protein CheY" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P06143 OMA:FDVTEAC RefSeq:NP_717723.1
ProteinModelPortal:Q8EF67 GeneID:1169863 KEGG:son:SO_2120
PATRIC:23523858 ProtClustDB:CLSK906601 Uniprot:Q8EF67
Length = 121
Score = 104 (41.7 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 21/65 (32%), Positives = 39/65 (60%)
Query: 2 DLVITDLHMPEMNGLELQKEIN--EEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPV 59
D ++TD +MP M+GL L K + F+ P+++++++ + + + A GA +MVKP
Sbjct: 48 DFILTDQNMPRMDGLTLIKSLRGMSAFMRTPIIMLTTEAGDDMKAQGKAVGATGWMVKPF 107
Query: 60 NPDAL 64
+P L
Sbjct: 108 DPQKL 112
>TAIR|locus:2170199 [details] [associations]
symbol:AT5G06800 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR025756
InterPro:IPR017930 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AK226644 IPI:IPI00528070
RefSeq:NP_196298.2 UniGene:At.50439 ProteinModelPortal:Q0WVU3
SMR:Q0WVU3 PRIDE:Q0WVU3 EnsemblPlants:AT5G06800.1 GeneID:830570
KEGG:ath:AT5G06800 TAIR:At5g06800 eggNOG:NOG298644
HOGENOM:HOG000241107 InParanoid:Q0WVU3 OMA:MDNINFE
ProtClustDB:CLSN2918619 Genevestigator:Q0WVU3 Uniprot:Q0WVU3
Length = 375
Score = 125 (49.1 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 25/55 (45%), Positives = 36/55 (65%)
Query: 141 KAKVVWTNSLHNRFLQAIRHIT-LEKAVPKKILEFMNVPGLTRENVASHLQKYRI 194
K ++ WT LH +F++ + + +KA PK IL+ M+ GLT +V SHLQKYRI
Sbjct: 192 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKRMDSDGLTIFHVKSHLQKYRI 246
>UNIPROTKB|Q48ND2 [details] [associations]
symbol:cheY1 "Chemotaxis protein CheY" species:264730
"Pseudomonas syringae pv. phaseolicola 1448A" [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CP000058 GenomeReviews:CP000058_GR
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_273089.1
ProteinModelPortal:Q48ND2 STRING:Q48ND2 GeneID:3556464
KEGG:psp:PSPPH_0807 PATRIC:19970685 OMA:KLANYKF
ProtClustDB:CLSK642719 Uniprot:Q48ND2
Length = 122
Score = 103 (41.3 bits), Expect = 0.00011, P = 0.00011
Identities = 19/63 (30%), Positives = 41/63 (65%)
Query: 1 IDLVITDLHMPEMNGLELQKEINE--EFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKP 58
+ L+I+D++MP M+G+ KE+ + + P+++++++ +ES + A+GA ++VKP
Sbjct: 47 VHLIISDVNMPNMDGITFVKEVKKLASYKFTPIIMLTTESQESKKAEGQAAGAKAWVVKP 106
Query: 59 VNP 61
P
Sbjct: 107 FQP 109
>TIGR_CMR|BA_5661 [details] [associations]
symbol:BA_5661 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000792 InterPro:IPR001789
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00196 PRINTS:PR00038
PROSITE:PS00622 PROSITE:PS50043 PROSITE:PS50110 SMART:SM00421
SMART:SM00448 GO:GO:0035556 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0043565 GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF46894
HOGENOM:HOG000034813 HSSP:P10957 RefSeq:NP_847809.1
RefSeq:YP_022338.1 RefSeq:YP_031501.1 ProteinModelPortal:Q81JP1
DNASU:1085395 EnsemblBacteria:EBBACT00000009931
EnsemblBacteria:EBBACT00000017478 EnsemblBacteria:EBBACT00000024022
GeneID:1085395 GeneID:2816223 GeneID:2851759 KEGG:ban:BA_5661
KEGG:bar:GBAA_5661 KEGG:bat:BAS5263 OMA:CAHELVG
ProtClustDB:CLSK917695 BioCyc:BANT260799:GJAJ-5337-MONOMER
BioCyc:BANT261594:GJ7F-5516-MONOMER Uniprot:Q81JP1
Length = 215
Score = 119 (46.9 bits), Expect = 0.00011, P = 0.00011
Identities = 24/63 (38%), Positives = 43/63 (68%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
D+V+ DL+MPEM+G+E I +E+ + V+V++S ++ ++ +L +GA Y++K V P
Sbjct: 50 DVVLMDLYMPEMDGVEATACIKKEYPDVKVIVLTSFSDQAHVLPALRAGASGYILKDVEP 109
Query: 62 DAL 64
D L
Sbjct: 110 DQL 112
>TAIR|locus:2194584 [details] [associations]
symbol:ARR4 "response regulator 4" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;TAS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0010017
"red or far-red light signaling pathway" evidence=IMP] [GO:0009736
"cytokinin mediated signaling pathway" evidence=RCA;IMP;TAS]
[GO:0010114 "response to red light" evidence=IMP] [GO:0009793
"embryo development ending in seed dormancy" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=RCA;IMP] [GO:0042752
"regulation of circadian rhythm" evidence=IGI] [GO:0009735
"response to cytokinin stimulus" evidence=IEP] [GO:0004674 "protein
serine/threonine kinase activity" evidence=IDA] [GO:0046777
"protein autophosphorylation" evidence=IDA] [GO:0006612 "protein
targeting to membrane" evidence=RCA] [GO:0009963 "positive
regulation of flavonoid biosynthetic process" evidence=RCA]
[GO:0010363 "regulation of plant-type hypersensitive response"
evidence=RCA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0007623 GO:GO:0004674
GO:GO:0046777 GO:GO:0006351 GO:GO:0042752 GO:GO:0010114
GO:GO:0009793 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AC007067 GO:GO:0010017
HOGENOM:HOG000034820 KO:K14492 ProtClustDB:CLSN2912722
EMBL:AB008487 EMBL:AB010915 EMBL:AF057282 IPI:IPI00523637
PIR:T48851 RefSeq:NP_172517.1 UniGene:At.22981 UniGene:At.67259
ProteinModelPortal:O82798 SMR:O82798 IntAct:O82798 STRING:O82798
EnsemblPlants:AT1G10470.1 GeneID:837587 KEGG:ath:AT1G10470
GeneFarm:4121 TAIR:At1g10470 InParanoid:O82798 OMA:KRIRDYM
PhylomeDB:O82798 Genevestigator:O82798 GermOnline:AT1G10470
Uniprot:O82798
Length = 259
Score = 121 (47.7 bits), Expect = 0.00012, P = 0.00012
Identities = 37/97 (38%), Positives = 51/97 (52%)
Query: 1 IDLVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKP 58
+DL+ITD MP M G EL K+I E F +PV++MSS++ + I + L GA +++KP
Sbjct: 89 VDLIITDYCMPGMTGYELLKKIKESSNFREVPVVIMSSENVLTRIDRCLEEGAQDFLLKP 148
Query: 59 VN-PDA--LRNVWQYAVTSKKGKSIFTEEKSSLANGS 92
V D LR+ V G E SS N S
Sbjct: 149 VKLADVKRLRSHLTKDVKLSNGNKRKLPEDSSSVNSS 185
>TIGR_CMR|CHY_1125 [details] [associations]
symbol:CHY_1125 "response regulator" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR005471 Pfam:PF00072 Pfam:PF09339
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
RefSeq:YP_359971.1 ProteinModelPortal:Q3AD13 STRING:Q3AD13
GeneID:3727659 KEGG:chy:CHY_1125 PATRIC:21275390
HOGENOM:HOG000131195 OMA:RNEYLWI ProtClustDB:CLSK289825
BioCyc:CHYD246194:GJCN-1124-MONOMER Uniprot:Q3AD13
Length = 205
Score = 118 (46.6 bits), Expect = 0.00012, P = 0.00012
Identities = 31/118 (26%), Positives = 64/118 (54%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN- 60
D+V+ D HMP ++GL+ + I E +P++V++ D+R+ + K L GA + +KP+
Sbjct: 46 DMVLVDYHMPALDGLDTVERIREIDQGVPIIVLTVDERQQIADKFLEVGASDFALKPIKA 105
Query: 61 PDALRNVWQYAVTSKKGKSIFTEEKSS-LANGSSAEKISFLHDIVSGSSMIEEKESKT 117
PD + + +A + +S +++ LA G + + + + + + E+KE +T
Sbjct: 106 PDLIARLKVHARMIEINRSQEKKDQDGFLAKGINKKTFNLIVEYLK-----EQKEPQT 158
>TAIR|locus:2093726 [details] [associations]
symbol:AT3G24120 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0000394 "RNA splicing, via endonucleolytic
cleavage and ligation" evidence=RCA] [GO:0009086 "methionine
biosynthetic process" evidence=RCA] [GO:0010048 "vernalization
response" evidence=RCA] [GO:0048573 "photoperiodism, flowering"
evidence=RCA] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
EMBL:CP002686 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR025756
InterPro:IPR017930 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 PROSITE:PS51294 IPI:IPI00531757
RefSeq:NP_974356.1 UniGene:At.26588 ProteinModelPortal:F4J5D9
SMR:F4J5D9 EnsemblPlants:AT3G24120.2 GeneID:821998
KEGG:ath:AT3G24120 OMA:NLPGDAC PhylomeDB:F4J5D9 Uniprot:F4J5D9
Length = 298
Score = 122 (48.0 bits), Expect = 0.00013, P = 0.00013
Identities = 31/105 (29%), Positives = 55/105 (52%)
Query: 141 KAKVVWTNSLHNRFLQAIRHIT-LEKAVPKKILEFMNVPGLTRENVASHLQKYRIFL--- 196
K ++ WT LH RF+ A+ + +KA PK I+ M V GLT ++ SHLQK+R+
Sbjct: 41 KPRLRWTTELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKFRLGRQAG 100
Query: 197 KRVADDGINAALKNFNHRSSLASGRTSMMLQEVQDYAQAIEKQLQ 241
K ++ +A+ + + +S + M Q+ Q+ + + L+
Sbjct: 101 KESTENSKDASCVGESQDTGSSSTSSMRMAQQEQNEGYQVTEALR 145
>TAIR|locus:2051572 [details] [associations]
symbol:AT2G06020 "AT2G06020" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR006447
TIGRFAMs:TIGR01557 EMBL:AC006413 IPI:IPI00525998 PIR:C84474
RefSeq:NP_178659.1 UniGene:At.52657 ProteinModelPortal:Q9ZPZ8
SMR:Q9ZPZ8 EnsemblPlants:AT2G06020.1 GeneID:815156
KEGG:ath:AT2G06020 TAIR:At2g06020 eggNOG:NOG275517
HOGENOM:HOG000154034 OMA:SKITPCI PhylomeDB:Q9ZPZ8
ProtClustDB:CLSN2912993 ArrayExpress:Q9ZPZ8 Genevestigator:Q9ZPZ8
Uniprot:Q9ZPZ8
Length = 301
Score = 122 (48.0 bits), Expect = 0.00014, P = 0.00014
Identities = 38/133 (28%), Positives = 66/133 (49%)
Query: 72 VTSKKGKSIFTEEKSSLANGS-SAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDE 130
VT ++ S + + A+ S ++I + + S EK K N+K A K +E
Sbjct: 11 VTFEENPSTYVHHHTKKASMVLSEQEIEVI--LQSNKETYNEKLEK-NTKENAEKVGIEE 67
Query: 131 LEGENA--------AAPKKAKVVWTNSLHNRFLQAIRHIT-LEKAVPKKILEFMNVPGLT 181
G ++ + +KA++ W++ LH+ F+ A+ + KA PK + E M V G+
Sbjct: 68 GNGSSSKITPCIFYTSDEKARLRWSSDLHDCFVNAVEKLGGPNKATPKSVKEAMEVEGIA 127
Query: 182 RENVASHLQKYRI 194
+V SHLQK+R+
Sbjct: 128 LHHVKSHLQKFRL 140
>TIGR_CMR|GSU_2693 [details] [associations]
symbol:GSU_2693 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820
RefSeq:NP_953738.1 ProteinModelPortal:Q749P9 GeneID:2687548
KEGG:gsu:GSU2693 PATRIC:22028241 OMA:VEMHRAR
BioCyc:GSUL243231:GH27-2669-MONOMER Uniprot:Q749P9
Length = 128
Score = 102 (41.0 bits), Expect = 0.00014, P = 0.00014
Identities = 24/59 (40%), Positives = 33/59 (55%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
D+VITD MP MNGLEL + E LPVM+++ + +I + G + KPVN
Sbjct: 49 DMVITDFSMPGMNGLELAAAVKELHPDLPVMMVTCEVTSDLIEMATDVGICRVLDKPVN 107
>TAIR|locus:2119425 [details] [associations]
symbol:UNE16 "unfertilized embryo sac 16" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0009567 "double fertilization forming a
zygote and endosperm" evidence=IMP] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 EMBL:CP002687 GO:GO:0003677
GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR025756 InterPro:IPR017930 InterPro:IPR006447
Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294 GO:GO:0009567
IPI:IPI00657591 RefSeq:NP_001031626.1 UniGene:At.22199
ProteinModelPortal:F4JTR5 SMR:F4JTR5 PRIDE:F4JTR5
EnsemblPlants:AT4G13640.2 GeneID:826998 KEGG:ath:AT4G13640
OMA:LPIDACL PhylomeDB:F4JTR5 Uniprot:F4JTR5
Length = 295
Score = 121 (47.7 bits), Expect = 0.00017, P = 0.00017
Identities = 24/55 (43%), Positives = 36/55 (65%)
Query: 141 KAKVVWTNSLHNRFLQAIRHIT-LEKAVPKKILEFMNVPGLTRENVASHLQKYRI 194
K ++ WT+ LH RF+ A+ + +KA PK I+ M V GLT ++ SHLQK+R+
Sbjct: 37 KPRLRWTSELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKFRL 91
>UNIPROTKB|Q9KKK8 [details] [associations]
symbol:VC_A1096 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
GO:GO:0006935 GO:GO:0004871 EMBL:AE003853 GenomeReviews:AE003853_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 OMA:MEEELHV
KO:K03413 HSSP:P06143 PIR:D82380 RefSeq:NP_233476.1
ProteinModelPortal:Q9KKK8 DNASU:2612407 GeneID:2612407
KEGG:vch:VCA1096 PATRIC:20086710 ProtClustDB:CLSK789264
Uniprot:Q9KKK8
Length = 125
Score = 101 (40.6 bits), Expect = 0.00018, P = 0.00018
Identities = 20/70 (28%), Positives = 39/70 (55%)
Query: 2 DLVITDLHMPEMNGLELQKEIN--EEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPV 59
D++I+D++MP M G E K + ++ P+++++++ + A GA ++VKP
Sbjct: 53 DVIISDVNMPVMTGFEFVKAVRMQSQYKFTPILMLTTETSPEKKQEGKAVGATGWLVKPF 112
Query: 60 NPDALRNVWQ 69
NP+ L Q
Sbjct: 113 NPETLLKTLQ 122
>TIGR_CMR|VC_A1096 [details] [associations]
symbol:VC_A1096 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 OMA:MEEELHV KO:K03413
HSSP:P06143 PIR:D82380 RefSeq:NP_233476.1 ProteinModelPortal:Q9KKK8
DNASU:2612407 GeneID:2612407 KEGG:vch:VCA1096 PATRIC:20086710
ProtClustDB:CLSK789264 Uniprot:Q9KKK8
Length = 125
Score = 101 (40.6 bits), Expect = 0.00018, P = 0.00018
Identities = 20/70 (28%), Positives = 39/70 (55%)
Query: 2 DLVITDLHMPEMNGLELQKEIN--EEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPV 59
D++I+D++MP M G E K + ++ P+++++++ + A GA ++VKP
Sbjct: 53 DVIISDVNMPVMTGFEFVKAVRMQSQYKFTPILMLTTETSPEKKQEGKAVGATGWLVKPF 112
Query: 60 NPDALRNVWQ 69
NP+ L Q
Sbjct: 113 NPETLLKTLQ 122
>TIGR_CMR|CPS_0397 [details] [associations]
symbol:CPS_0397 "nitrogen regulation protein NR(I)"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006808 "regulation of
nitrogen utilization" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 InterPro:IPR010114 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0009399 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
KO:K07712 GO:GO:0050906 TIGRFAMs:TIGR01818 RefSeq:YP_267155.1
ProteinModelPortal:Q489V9 SMR:Q489V9 STRING:Q489V9 GeneID:3520592
KEGG:cps:CPS_0397 PATRIC:21464159 OMA:KELAVEP
BioCyc:CPSY167879:GI48-492-MONOMER Uniprot:Q489V9
Length = 466
Score = 124 (48.7 bits), Expect = 0.00018, P = 0.00018
Identities = 24/73 (32%), Positives = 48/73 (65%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSS-DDRESVIMKSLASGAVFYMVKPVN 60
+++I+D+ MP ++G+EL K +N++ H+PV++M++ D +S + + GA Y+ KP +
Sbjct: 49 EIIISDIRMPNIDGMELLKRLNKQHSHIPVIIMTAHSDLDSAV-NAYQGGAFEYLPKPFD 107
Query: 61 PDALRNVWQYAVT 73
D N+ + A+T
Sbjct: 108 IDEAINLSKRALT 120
>TAIR|locus:2163852 [details] [associations]
symbol:ATS "AT5G42630" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IMP;TAS]
[GO:0048481 "ovule development" evidence=IMP] [GO:0080060
"integument development" evidence=IGI;IMP] [GO:0005618 "cell wall"
evidence=IDA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IDA] InterPro:IPR001005 InterPro:IPR009057
Pfam:PF00249 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0005618 GO:GO:0030154 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0044212
PROSITE:PS51293 HSSP:O49397 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 GO:GO:0080060 HOGENOM:HOG000241649 EMBL:AB013391
EMBL:AY048691 EMBL:BT026053 IPI:IPI00541325 IPI:IPI00892123
RefSeq:NP_001119363.1 RefSeq:NP_199077.1 UniGene:At.26412
ProteinModelPortal:Q9FJV5 SMR:Q9FJV5 STRING:Q9FJV5
EnsemblPlants:AT5G42630.1 GeneID:834270 KEGG:ath:AT5G42630
TAIR:At5g42630 eggNOG:NOG280455 InParanoid:Q9FJV5 OMA:PQIYGRD
PhylomeDB:Q9FJV5 ProtClustDB:CLSN2916355 Genevestigator:Q9FJV5
Uniprot:Q9FJV5
Length = 276
Score = 120 (47.3 bits), Expect = 0.00019, P = 0.00019
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 125 KRRKDELEGENAAAPKKAKVVWTNSLHNRFLQAIRHIT-LEKAVPKKILEFMNVPGLTRE 183
KR + G + + ++ WT++LH F+ A++ + E+A PK +LE MNV LT
Sbjct: 90 KRSSSSMVGLKRSI-RAPRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLA 148
Query: 184 NVASHLQKYR 193
+V SHLQ YR
Sbjct: 149 HVKSHLQMYR 158
>TAIR|locus:2125771 [details] [associations]
symbol:AT4G04580 "AT4G04580" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
EMBL:AL161501 Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 EMBL:AF074021 IPI:IPI00541303 PIR:G85057
RefSeq:NP_192367.1 UniGene:At.54143 ProteinModelPortal:Q9XEB2
SMR:Q9XEB2 EnsemblPlants:AT4G04580.1 GeneID:825790
KEGG:ath:AT4G04580 TAIR:At4g04580 eggNOG:NOG300503
HOGENOM:HOG000153846 InParanoid:Q9XEB2 OMA:RDLTISH PhylomeDB:Q9XEB2
ProtClustDB:CLSN2915807 ArrayExpress:Q9XEB2 Genevestigator:Q9XEB2
Uniprot:Q9XEB2
Length = 166
Score = 111 (44.1 bits), Expect = 0.00023, P = 0.00023
Identities = 40/124 (32%), Positives = 55/124 (44%)
Query: 146 WTNSLHNRFLQAIRHITLEK-AVPKKILEFMNVPGLTRENVASHLQKYRIFLKRVADDGI 204
WT+ L RF+Q I + E+ A PK+IL M V LT +V SHLQ YR K + I
Sbjct: 19 WTDDLDIRFIQVIEKLGGEESATPKRILSLMGVRDLTISHVKSHLQMYRNKKKEESSKEI 78
Query: 205 NAALKNFNHRSSLASGRTSMMLQEVQDYAQAIEKQ--LQM-RTSPFIPRYGRGISELNGN 261
++ R S LQ + Q I+ Q LQ+ T P G L+ +
Sbjct: 79 KM-MREMTQRQS------QQYLQIYERATQFIQNQQRLQLDNTEKITPVLGSSNKSLDQS 131
Query: 262 TSFG 265
+ G
Sbjct: 132 SKVG 135
>TIGR_CMR|BA_1660 [details] [associations]
symbol:BA_1660 "chemotaxis response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006935 "chemotaxis" evidence=ISS] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
OMA:PFQAPKV RefSeq:NP_844107.1 RefSeq:YP_018295.1
RefSeq:YP_027808.1 HSSP:Q56312 ProteinModelPortal:Q81SI8 SMR:Q81SI8
DNASU:1083740 EnsemblBacteria:EBBACT00000009828
EnsemblBacteria:EBBACT00000015597 EnsemblBacteria:EBBACT00000020958
GeneID:1083740 GeneID:2817294 GeneID:2851539 KEGG:ban:BA_1660
KEGG:bar:GBAA_1660 KEGG:bat:BAS1541 ProtClustDB:CLSK916318
BioCyc:BANT260799:GJAJ-1613-MONOMER
BioCyc:BANT261594:GJ7F-1681-MONOMER Uniprot:Q81SI8
Length = 122
Score = 100 (40.3 bits), Expect = 0.00023, P = 0.00023
Identities = 21/61 (34%), Positives = 37/61 (60%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
D+V D+ MPEM+GLE KEI + V++ S+ ++ +++ ++ GA ++VKP
Sbjct: 50 DIVTLDITMPEMDGLEALKEIIKIDASAKVVICSAMGQQGMVLDAIKGGAKDFIVKPFQA 109
Query: 62 D 62
D
Sbjct: 110 D 110
>TIGR_CMR|GSU_1316 [details] [associations]
symbol:GSU_1316 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR003018
InterPro:IPR001789 Pfam:PF00072 Pfam:PF13185 PROSITE:PS50110
SMART:SM00065 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:NP_952369.1
ProteinModelPortal:Q74DK0 DNASU:2685737 GeneID:2685737
KEGG:gsu:GSU1316 PATRIC:22025407 HOGENOM:HOG000276092 OMA:NMVLTDI
ProtClustDB:CLSK828294 BioCyc:GSUL243231:GH27-1295-MONOMER
Uniprot:Q74DK0
Length = 324
Score = 120 (47.3 bits), Expect = 0.00027, P = 0.00026
Identities = 32/102 (31%), Positives = 55/102 (53%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN- 60
D+++TD+++P M+GL L K + + F L V++++S+ +K+L GA +++KPV+
Sbjct: 52 DILVTDINLPGMSGLNLLKLLKDSFPDLEVVIVTSNASSFTAIKALRLGAYDFIIKPVDD 111
Query: 61 PDALRNVWQYAVTSKKGKSIFTEEKSSLANGSSAEKISFLHD 102
P L N+ AV K T E L + + LHD
Sbjct: 112 PAILTNIVGRAVE----KQSLTRENRRLMDDMKLKNRE-LHD 148
>TAIR|locus:2027237 [details] [associations]
symbol:ARR15 "response regulator 15" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
pathway" evidence=IGI;RCA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007623
"circadian rhythm" evidence=RCA] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0006351 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AC008263 EMBL:AC013258
EMBL:AF305720 IPI:IPI00538856 RefSeq:NP_177627.1 UniGene:At.11589
ProteinModelPortal:Q7G8V2 SMR:Q7G8V2 IntAct:Q7G8V2 STRING:Q7G8V2
EnsemblPlants:AT1G74890.1 GeneID:843828 KEGG:ath:AT1G74890
GeneFarm:4128 TAIR:At1g74890 HOGENOM:HOG000034820 InParanoid:Q7G8V2
KO:K14492 OMA:KISACKV PhylomeDB:Q7G8V2 ProtClustDB:CLSN2914197
Genevestigator:Q7G8V2 GermOnline:AT1G74890 Uniprot:Q7G8V2
Length = 206
Score = 115 (45.5 bits), Expect = 0.00028, P = 0.00028
Identities = 40/138 (28%), Positives = 66/138 (47%)
Query: 1 IDLVITDLHMPEMNGLELQKEINEEFI--HLPVMVMSSDDRESVIMKSLASGAVFYMVKP 58
++L++TD MP + G EL K+I E +PV++MSS++ + I + + GA +++KP
Sbjct: 73 VNLIVTDYSMPGLTGYELLKKIKESSALREIPVVIMSSENIQPRIEQCMIEGAEEFLLKP 132
Query: 59 VN-PDA--LRNVWQYAVTSKKGKSIFTEEKSSLANGSSAEKISFLHDIVSGSSMIEEKES 115
V D L+ + +++GK+ K L N + S S S + +
Sbjct: 133 VKLADVKRLKELIMRGGEAEEGKTKKLSPKRILQNDIDSSPSSSSTSSSSSSHDVSSLDD 192
Query: 116 KTNSKRKASKRRKDELEG 133
T S SKR K E G
Sbjct: 193 DTPS----SKRIKLESRG 206
>TAIR|locus:2040282 [details] [associations]
symbol:RR3 "response regulator 3" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=RCA;IMP;TAS] [GO:0007623 "circadian
rhythm" evidence=RCA;IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010029 "regulation of seed germination"
evidence=RCA] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=RCA] [GO:0048831 "regulation of shoot system
development" evidence=RCA] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0009536
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006355 GO:GO:0007623
GO:GO:0006351 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K14492 eggNOG:COG3706
EMBL:AB010917 EMBL:AC005662 EMBL:AY074643 IPI:IPI00535987
PIR:T48853 RefSeq:NP_181663.1 UniGene:At.244
ProteinModelPortal:O80365 SMR:O80365 IntAct:O80365 STRING:O80365
EnsemblPlants:AT2G41310.1 GeneID:818730 KEGG:ath:AT2G41310
GeneFarm:4125 TAIR:At2g41310 InParanoid:O80365 OMA:METESKF
PhylomeDB:O80365 ProtClustDB:CLSN2683767 Genevestigator:O80365
GermOnline:AT2G41310 Uniprot:O80365
Length = 225
Score = 116 (45.9 bits), Expect = 0.00030, P = 0.00030
Identities = 40/148 (27%), Positives = 73/148 (49%)
Query: 1 IDLVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKP 58
I+L+ITD MP M G +L K++ E F +PV++MSS++ + I + L GA + +KP
Sbjct: 72 INLIITDYCMPGMTGYDLLKKVKESAAFRSIPVVIMSSENVPARISRCLEEGAEEFFLKP 131
Query: 59 VNPDALRNVWQYAVTSK----KGKSIFTEEKSSLANGSSAEKISFLHDIVSGSSMIEEKE 114
V L + + + +K K + EE + + E+ ++ + +E E
Sbjct: 132 VKLADLTKLKPHMMKTKLKKESEKPVAIEE--IVVSKPEIEEEEEESSVIEILPLHQEIE 189
Query: 115 SKTNSKRKASKRRK--DELEGENAAAPK 140
S+ +S +RK +E+ + + PK
Sbjct: 190 SEQLEPMLSSNKRKAMEEVVSTDRSRPK 217
>TIGR_CMR|GSU_3198 [details] [associations]
symbol:GSU_3198 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 RefSeq:NP_954239.1
HSSP:P04042 ProteinModelPortal:Q747R7 GeneID:2687002
KEGG:gsu:GSU3198 PATRIC:22029251 OMA:PSARIIM ProtClustDB:CLSK829154
BioCyc:GSUL243231:GH27-3148-MONOMER Uniprot:Q747R7
Length = 121
Score = 99 (39.9 bits), Expect = 0.00030, P = 0.00030
Identities = 22/66 (33%), Positives = 41/66 (62%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
D+V D+ MP NG+E +EI V++ S+ +ES++ K+ + GA +++KP NP
Sbjct: 49 DVVTLDIIMPVKNGIEALREIMAIDPKARVVICSAVGQESLVDKARSVGAKDFILKPFNP 108
Query: 62 DALRNV 67
+ +++V
Sbjct: 109 ERVKDV 114
>TAIR|locus:2080590 [details] [associations]
symbol:ARR9 "response regulator 9" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;IPI] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0009736 "cytokinin mediated signaling pathway"
evidence=RCA;IMP;TAS] [GO:0007623 "circadian rhythm"
evidence=RCA;IMP] [GO:0009735 "response to cytokinin stimulus"
evidence=IEP] [GO:0009740 "gibberellic acid mediated signaling
pathway" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 GO:GO:0009536 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006355 GO:GO:0007623 GO:GO:0006351
GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034820 KO:K14492 eggNOG:COG3706
ProtClustDB:CLSN2683767 EMBL:AB010918 EMBL:AL138655 EMBL:AY090234
EMBL:AY133571 IPI:IPI00543561 PIR:T47764 RefSeq:NP_191263.1
UniGene:At.245 ProteinModelPortal:O80366 SMR:O80366 IntAct:O80366
STRING:O80366 EnsemblPlants:AT3G57040.1 GeneID:824871
KEGG:ath:AT3G57040 GeneFarm:4126 TAIR:At3g57040 InParanoid:O80366
OMA:GISTDRA PhylomeDB:O80366 Genevestigator:O80366
GermOnline:AT3G57040 Uniprot:O80366
Length = 234
Score = 116 (45.9 bits), Expect = 0.00034, P = 0.00034
Identities = 31/95 (32%), Positives = 53/95 (55%)
Query: 1 IDLVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKP 58
++L+ITD MP M G +L K++ E F +PV++MSS++ + I + L GA + +KP
Sbjct: 74 VNLIITDYCMPGMTGYDLLKKVKESSAFRDIPVVIMSSENVPARISRCLEEGAEEFFLKP 133
Query: 59 VNPDALRNVWQYAVTSK-KGKSIFT-EEKSSLANG 91
V L + + + +K K + + E S + NG
Sbjct: 134 VRLADLNKLKPHMMKTKLKNQKLEEIETTSKVENG 168
>TAIR|locus:2010297 [details] [associations]
symbol:AT1G49560 "AT1G49560" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002684
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC011807 EMBL:AK221631
IPI:IPI00546952 PIR:B96532 RefSeq:NP_564549.1 UniGene:At.38204
ProteinModelPortal:Q9FX84 SMR:Q9FX84 EnsemblPlants:AT1G49560.1
GeneID:841380 KEGG:ath:AT1G49560 TAIR:At1g49560 InParanoid:Q9FX84
OMA:SSMEDVE PhylomeDB:Q9FX84 ProtClustDB:CLSN2917204
Genevestigator:Q9FX84 Uniprot:Q9FX84
Length = 333
Score = 119 (46.9 bits), Expect = 0.00036, P = 0.00036
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 138 APKKAKVVWTNSLHNRFLQAIRHITLEK-AVPKKILEFMNVPGLTRENVASHLQKYRIFL 196
A +K + W LH RF+ A++ + A PK+I E M GLT + V SHLQKYR+ +
Sbjct: 189 ALRKQRRCWNPELHRRFVDALQQLGGPGVATPKQIREHMQEEGLTNDEVKSHLQKYRLHI 248
Query: 197 KR 198
++
Sbjct: 249 RK 250
>TAIR|locus:2199342 [details] [associations]
symbol:APRR6 "pseudo-response regulator 6" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:AC016447 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557 KO:K14491
IPI:IPI00522591 IPI:IPI01020037 PIR:E96705 RefSeq:NP_176988.4
UniGene:At.52431 ProteinModelPortal:Q9C9F6 SMR:Q9C9F6 PaxDb:Q9C9F6
PRIDE:Q9C9F6 GeneID:843150 KEGG:ath:AT1G68210 GeneFarm:4346
TAIR:At1g68210 eggNOG:NOG320519 OMA:IANIEMP Genevestigator:Q9C9F6
Uniprot:Q9C9F6
Length = 755
Score = 130 (50.8 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 34/120 (28%), Positives = 59/120 (49%)
Query: 84 EKSSLANGSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENAAAPK--- 140
++ ++ S + F+ D S ++++S N + K + E+E + K
Sbjct: 163 KRQRISQASLLGRRPFI-DTFSTYETFQKRKSIANVEWKTTPSYAIEIENKRKEWKKSVG 221
Query: 141 KAKVVWTNSLHNRFLQAIRHITLEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKRVA 200
+ K +W + H +F+ AI + E PK ILE MN P LT V SHLQKY+ + +++
Sbjct: 222 RRKSLWNSERHMKFIAAISILGEEDFRPKSILEIMNDPNLTHRQVGSHLQKYKAQIDQIS 281
Score = 40 (19.1 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 372 TINNNPYLNYAGIRLKN-DGDQLVGAGEVGLN 402
TI+NNP N I + D G GL+
Sbjct: 385 TISNNPAYNILSIDSSSIDSSSYTGLVSTGLS 416
>TIGR_CMR|BA_2561 [details] [associations]
symbol:BA_2561 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 SUPFAM:SSF46894 HSSP:Q9WYN0 RefSeq:NP_844929.1
RefSeq:YP_019199.1 RefSeq:YP_028645.1 ProteinModelPortal:Q81Q72
DNASU:1085788 EnsemblBacteria:EBBACT00000009128
EnsemblBacteria:EBBACT00000014330 EnsemblBacteria:EBBACT00000023961
GeneID:1085788 GeneID:2819548 GeneID:2848970 KEGG:ban:BA_2561
KEGG:bar:GBAA_2561 KEGG:bat:BAS2385 OMA:LETVMNG
ProtClustDB:CLSK916690 BioCyc:BANT260799:GJAJ-2450-MONOMER
BioCyc:BANT261594:GJ7F-2538-MONOMER Uniprot:Q81Q72
Length = 231
Score = 115 (45.5 bits), Expect = 0.00043, P = 0.00043
Identities = 24/63 (38%), Positives = 43/63 (68%)
Query: 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSS--DDRESVIMKSLASGAVFYMVKP 58
+DL+I D+ MP+ NGLE+ +E+ E +P++++S+ +D + ++ L +GA YM+KP
Sbjct: 47 VDLMILDIMMPKRNGLEVCQEVRENNT-VPILMLSAKAEDMDKIL--GLMTGADDYMIKP 103
Query: 59 VNP 61
NP
Sbjct: 104 FNP 106
>TIGR_CMR|NSE_0512 [details] [associations]
symbol:NSE_0512 "response regulator/GGDEF domain protein"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 GO:GO:0005622
SUPFAM:SSF55073 GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160
SMART:SM00267 TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG3706 EMBL:CP000237
GenomeReviews:CP000237_GR KO:K02488 HOGENOM:HOG000167204
ProtClustDB:PRK09581 RefSeq:YP_506396.1 ProteinModelPortal:Q2GDQ0
STRING:Q2GDQ0 GeneID:3931788 KEGG:nse:NSE_0512 PATRIC:22681073
OMA:TELGIND BioCyc:NSEN222891:GHFU-532-MONOMER Uniprot:Q2GDQ0
Length = 456
Score = 120 (47.3 bits), Expect = 0.00048, P = 0.00048
Identities = 31/132 (23%), Positives = 77/132 (58%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEF--IHLPVMVMSS-DDRESVIMKSLASGAVFYMVKP 58
D+++ D+ MPEM+G E + + ++ +H+PV+++++ +D E+ + + L SGA ++VKP
Sbjct: 48 DVILLDVMMPEMDGFETCRRLKSDYATMHIPVIIVTALNDIENKV-EGLNSGADDFLVKP 106
Query: 59 VNPDAL----RNVWQYAVTSKKGKSIFTEEKSSLANGSSAEKISFLHDIVSGS-SMIEEK 113
L +++ ++ + + + KS + +G+ ++ I+++ DI SG +++ ++
Sbjct: 107 AKDFTLFIRIKSLLRFKTVLDEVR-LRISTKSQITSGTESKIINYVEDISSGVIAIVNQQ 165
Query: 114 ESKTNSKRKASK 125
S++ + K
Sbjct: 166 YSESKELEEILK 177
>UNIPROTKB|P0AE67 [details] [associations]
symbol:cheY species:83333 "Escherichia coli K-12"
[GO:0006473 "protein acetylation" evidence=IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0060286 "flagellar cell motility" evidence=TAS]
[GO:0006935 "chemotaxis" evidence=IEA;IMP;TAS] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IMP] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA;IDA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
GO:GO:0000287 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006935 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000160
PDB:1BDJ PDBsum:1BDJ HOGENOM:HOG000034820 GO:GO:0006473
GO:GO:0060286 PDB:1A0O PDB:1EAY PDB:1FFG PDB:1FFS PDB:1FFW PDB:2LP4
PDBsum:1A0O PDBsum:1EAY PDBsum:1FFG PDBsum:1FFS PDBsum:1FFW
PDBsum:2LP4 EMBL:M13463 EMBL:K02175 PIR:E25195 RefSeq:NP_416396.1
RefSeq:YP_490144.1 PDB:1AB5 PDB:1AB6 PDB:1C4W PDB:1CEY PDB:1CHN
PDB:1CYE PDB:1D4Z PDB:1DJM PDB:1E6K PDB:1E6L PDB:1E6M PDB:1EHC
PDB:1F4V PDB:1FQW PDB:1HEY PDB:1JBE PDB:1KMI PDB:1MIH PDB:1U8T
PDB:1UDR PDB:1VLZ PDB:1YMU PDB:1YMV PDB:1ZDM PDB:2B1J PDB:2ID7
PDB:2ID9 PDB:2IDM PDB:3CHY PDB:3F7N PDB:3FFT PDB:3FFW PDB:3FFX
PDB:3FGZ PDB:3MYY PDB:3OLV PDB:3OLW PDB:3OLX PDB:3OLY PDB:3OO0
PDB:3OO1 PDB:3RVJ PDB:3RVK PDB:3RVL PDB:3RVM PDB:3RVN PDB:3RVO
PDB:3RVP PDB:3RVQ PDB:3RVR PDB:3RVS PDB:5CHY PDB:6CHY PDBsum:1AB5
PDBsum:1AB6 PDBsum:1C4W PDBsum:1CEY PDBsum:1CHN PDBsum:1CYE
PDBsum:1D4Z PDBsum:1DJM PDBsum:1E6K PDBsum:1E6L PDBsum:1E6M
PDBsum:1EHC PDBsum:1F4V PDBsum:1FQW PDBsum:1HEY PDBsum:1JBE
PDBsum:1KMI PDBsum:1MIH PDBsum:1U8T PDBsum:1UDR PDBsum:1VLZ
PDBsum:1YMU PDBsum:1YMV PDBsum:1ZDM PDBsum:2B1J PDBsum:2ID7
PDBsum:2ID9 PDBsum:2IDM PDBsum:3CHY PDBsum:3F7N PDBsum:3FFT
PDBsum:3FFW PDBsum:3FFX PDBsum:3FGZ PDBsum:3MYY PDBsum:3OLV
PDBsum:3OLW PDBsum:3OLX PDBsum:3OLY PDBsum:3OO0 PDBsum:3OO1
PDBsum:3RVJ PDBsum:3RVK PDBsum:3RVL PDBsum:3RVM PDBsum:3RVN
PDBsum:3RVO PDBsum:3RVP PDBsum:3RVQ PDBsum:3RVR PDBsum:3RVS
PDBsum:5CHY PDBsum:6CHY ProteinModelPortal:P0AE67 SMR:P0AE67
DIP:DIP-48237N IntAct:P0AE67 SWISS-2DPAGE:P0AE67 PRIDE:P0AE67
EnsemblBacteria:EBESCT00000000750 EnsemblBacteria:EBESCT00000017790
GeneID:12930559 GeneID:946393 KEGG:ecj:Y75_p1858 KEGG:eco:b1882
PATRIC:32119091 EchoBASE:EB0148 EcoGene:EG10150 KO:K03413
OMA:FGFVISD ProtClustDB:PRK10610 BioCyc:EcoCyc:CHEY-MONOMER
BioCyc:ECOL316407:JW1871-MONOMER EvolutionaryTrace:P0AE67
Genevestigator:P0AE67 Uniprot:P0AE67
Length = 129
Score = 97 (39.2 bits), Expect = 0.00049, P = 0.00049
Identities = 22/57 (38%), Positives = 38/57 (66%)
Query: 4 VITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKP 58
VI+D +MP M+GLEL K I + LPV++++++ ++ I+ + +GA Y+VKP
Sbjct: 54 VISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110
>TAIR|locus:2097870 [details] [associations]
symbol:RR5 "response regulator 5" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;IMP] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
pathway" evidence=RCA;IMP;TAS] [GO:0010114 "response to red light"
evidence=IMP] [GO:0007623 "circadian rhythm" evidence=RCA;IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006612 "protein targeting to membrane"
evidence=RCA] [GO:0009963 "positive regulation of flavonoid
biosynthetic process" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0005739 GO:GO:0005634 GO:GO:0005737 GO:GO:0009536
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355 GO:GO:0007623
GO:GO:0006351 GO:GO:0010114 GO:GO:0009736 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AL049658
HOGENOM:HOG000034820 KO:K14492 EMBL:AB008488 EMBL:AB010916
EMBL:AF057281 EMBL:AY072390 EMBL:AY114698 IPI:IPI00516847
PIR:T06673 PIR:T50855 PIR:T50856 RefSeq:NP_190393.1
UniGene:At.24915 ProteinModelPortal:Q9SB04 SMR:Q9SB04 IntAct:Q9SB04
STRING:Q9SB04 EnsemblPlants:AT3G48100.1 GeneID:823965
KEGG:ath:AT3G48100 GeneFarm:4122 TAIR:At3g48100 InParanoid:Q9SB04
OMA:LEANDIY PhylomeDB:Q9SB04 ProtClustDB:CLSN2684027
Genevestigator:Q9SB04 GermOnline:AT3G48100 Uniprot:Q9SB04
Length = 184
Score = 111 (44.1 bits), Expect = 0.00050, P = 0.00050
Identities = 26/61 (42%), Positives = 39/61 (63%)
Query: 1 IDLVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKP 58
I+L++TD MP M G EL K+I E F +PV++MSS++ I + L GA +++KP
Sbjct: 81 INLIMTDYSMPGMTGYELLKKIKESSAFREIPVVIMSSENILPRIDRCLEEGAEDFLLKP 140
Query: 59 V 59
V
Sbjct: 141 V 141
>UNIPROTKB|J3KP29 [details] [associations]
symbol:NUP98 "Nuclear pore complex protein Nup98-Nup96"
species:9606 "Homo sapiens" [GO:0005643 "nuclear pore"
evidence=IEA] [GO:0006810 "transport" evidence=IEA]
InterPro:IPR007230 Pfam:PF04096 PROSITE:PS51434 GO:GO:0006810
GO:GO:0005643 EMBL:AC060812 SUPFAM:SSF82215 InterPro:IPR021967
Pfam:PF12110 EMBL:AC090587 HGNC:HGNC:8068 ChiTaRS:NUP98
ProteinModelPortal:J3KP29 Ensembl:ENST00000359171 Uniprot:J3KP29
Length = 1638
Score = 126 (49.4 bits), Expect = 0.00055, P = 0.00055
Identities = 62/241 (25%), Positives = 93/241 (38%)
Query: 238 KQLQMRTSPFIPRYGRGISELNGNTSFGSIGLQSHNSLSHVGLLGVQDNFHQP--FFGNT 295
+Q Q TS F +G+ + N SFG+ S + +GL GV QP FG
Sbjct: 276 QQNQQTTSLFSKPFGQATTTQNTGFSFGNTSTIGQPSTNTMGLFGVTQA-SQPGGLFGTA 334
Query: 296 TYPLYQANPGTTFGTGLIDMGTNSFSCGGLSGGLMNGTNSNQIFHQKSKLRPDPYDNNTG 355
T + GT FGTG G + G + G + G N F + P + +G
Sbjct: 335 T----NTSTGTAFGTGTGLFGQTNTGFGAV-GSTLFGNNKLTTFGSSTTSAPS-FGTTSG 388
Query: 356 ASSLKGFGASGLEKMWTINNNPYLNYAGIRLKNDGDQLVGAGEVGL------NVKGDAGA 409
L GFG + + P G L +GAG+ L + G G
Sbjct: 389 G--LFGFGTNTSGNS-IFGSKPAPGTLGTGLGAGFGTALGAGQASLFGNNQPKIGGPLGT 445
Query: 410 GNEGATFHHLPLGYSSSPAGFAVGNEQEHTSVLPPLSLSQQQYCLGKKVENDFTFGLMND 469
G GA P G++++ A G Q ++ P + + QQ L + + N T+ D
Sbjct: 446 GAFGA-----P-GFNTTTATLGFGAPQAPVALTDPNASAAQQAVLQQHI-NSLTYSPFGD 498
Query: 470 A 470
+
Sbjct: 499 S 499
>TAIR|locus:2041539 [details] [associations]
symbol:AT2G42660 "AT2G42660" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AC006931 HSSP:O49397
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 EMBL:AC007087 EMBL:AY074640 EMBL:AY078938
IPI:IPI00542274 PIR:F84856 RefSeq:NP_181794.1 UniGene:At.37023
ProteinModelPortal:Q9SJJ0 SMR:Q9SJJ0 PaxDb:Q9SJJ0 PRIDE:Q9SJJ0
EnsemblPlants:AT2G42660.1 GeneID:818866 KEGG:ath:AT2G42660
TAIR:At2g42660 eggNOG:NOG258430 HOGENOM:HOG000153491 OMA:NREETVE
PhylomeDB:Q9SJJ0 ProtClustDB:CLSN2913320 ArrayExpress:Q9SJJ0
Genevestigator:Q9SJJ0 Uniprot:Q9SJJ0
Length = 255
Score = 115 (45.5 bits), Expect = 0.00056, P = 0.00056
Identities = 26/85 (30%), Positives = 48/85 (56%)
Query: 112 EKESKTNSKRKASKRRKDELEGE--NAAAPKKAKVVWTNSLHNRFLQAIRHIT-LEKAVP 168
E+ + N++ ++S +D++ ++ WT LH F++A++ + ++A P
Sbjct: 19 EETVEKNNEEESSVEDEDQITNNVRQYIRSNMPRLRWTPDLHLSFVRAVQRLGGPDRATP 78
Query: 169 KKILEFMNVPGLTRENVASHLQKYR 193
K +LE MN+ GL+ +V SHLQ YR
Sbjct: 79 KLVLEMMNLKGLSIAHVKSHLQMYR 103
>UNIPROTKB|Q8ECB3 [details] [associations]
symbol:flrC "Two component signal transduction system
controlling flagella biosynthesis Sigma54-dependent response
regulator FlrC" species:211586 "Shewanella oneidensis MR-1"
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0030092 "regulation of flagellum assembly" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0019861 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000058489 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539 GO:GO:0030092
KO:K10943 ProtClustDB:CLSK874687 HSSP:P41789 RefSeq:NP_718785.1
ProteinModelPortal:Q8ECB3 GeneID:1170922 KEGG:son:SO_3230
PATRIC:23526142 OMA:NWPNLPV Uniprot:Q8ECB3
Length = 446
Score = 119 (46.9 bits), Expect = 0.00060, P = 0.00060
Identities = 43/143 (30%), Positives = 68/143 (47%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
DLVI+D+ MP + GL L + + LPV++M++ + ++ GAV Y+ KP P
Sbjct: 49 DLVISDVQMPGIGGLGLLNYLQQHHPKLPVLLMTAYATIGSAVSAIKLGAVDYLAKPFAP 108
Query: 62 DALRN-VWQYA-VTSKKGKSIFTEEKS----SLANGSSAEKISFLHDIVSGSSMIEEKES 115
+ L N V +Y + + + + +EKS SLA +A S + SGS KE
Sbjct: 109 EVLLNQVSRYLPLKQNRDQPVVADEKSLSLLSLAQRVAASDASVMILGPSGSG----KEV 164
Query: 116 KTNSKRKASKRRKDELEGENAAA 138
+ S R ++ N AA
Sbjct: 165 LARYIHQHSSRAEEAFVAINCAA 187
>TIGR_CMR|SO_3230 [details] [associations]
symbol:SO_3230 "flagellar regulatory protein C"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0030092 "regulation
of flagellum assembly" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0019861 GO:GO:0035556 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025943 InterPro:IPR025944 PROSITE:PS00676
PROSITE:PS00688 GO:GO:0001539 GO:GO:0030092 KO:K10943
ProtClustDB:CLSK874687 HSSP:P41789 RefSeq:NP_718785.1
ProteinModelPortal:Q8ECB3 GeneID:1170922 KEGG:son:SO_3230
PATRIC:23526142 OMA:NWPNLPV Uniprot:Q8ECB3
Length = 446
Score = 119 (46.9 bits), Expect = 0.00060, P = 0.00060
Identities = 43/143 (30%), Positives = 68/143 (47%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
DLVI+D+ MP + GL L + + LPV++M++ + ++ GAV Y+ KP P
Sbjct: 49 DLVISDVQMPGIGGLGLLNYLQQHHPKLPVLLMTAYATIGSAVSAIKLGAVDYLAKPFAP 108
Query: 62 DALRN-VWQYA-VTSKKGKSIFTEEKS----SLANGSSAEKISFLHDIVSGSSMIEEKES 115
+ L N V +Y + + + + +EKS SLA +A S + SGS KE
Sbjct: 109 EVLLNQVSRYLPLKQNRDQPVVADEKSLSLLSLAQRVAASDASVMILGPSGSG----KEV 164
Query: 116 KTNSKRKASKRRKDELEGENAAA 138
+ S R ++ N AA
Sbjct: 165 LARYIHQHSSRAEEAFVAINCAA 187
>TIGR_CMR|BA_2265 [details] [associations]
symbol:BA_2265 "DNA-binding response regulator, LuxR
family" species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] InterPro:IPR000792 InterPro:IPR001789
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00196 PRINTS:PR00038
PROSITE:PS00622 PROSITE:PS50043 PROSITE:PS50110 SMART:SM00421
SMART:SM00448 GO:GO:0035556 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0043565 GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF46894
HOGENOM:HOG000034813 HSSP:P11470 KO:K02479 RefSeq:NP_844654.1
RefSeq:YP_018910.1 RefSeq:YP_028372.1 ProteinModelPortal:Q81QZ6
SMR:Q81QZ6 DNASU:1085185 EnsemblBacteria:EBBACT00000013044
EnsemblBacteria:EBBACT00000015415 EnsemblBacteria:EBBACT00000020683
GeneID:1085185 GeneID:2817594 GeneID:2851354 KEGG:ban:BA_2265
KEGG:bar:GBAA_2265 KEGG:bat:BAS2109 OMA:QGNANFH
ProtClustDB:CLSK916553 BioCyc:BANT260799:GJAJ-2177-MONOMER
BioCyc:BANT261594:GJ7F-2253-MONOMER Uniprot:Q81QZ6
Length = 209
Score = 112 (44.5 bits), Expect = 0.00068, P = 0.00068
Identities = 21/63 (33%), Positives = 40/63 (63%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
D+V+ DL MP+M+G+E K+I + + ++++SS + ++ +L +GA Y +K V P
Sbjct: 50 DVVLMDLSMPKMDGIEATKQIKQYDETIKILILSSFSEQDYVLPALEAGADGYQLKEVQP 109
Query: 62 DAL 64
+ L
Sbjct: 110 EQL 112
>TIGR_CMR|SPO_1679 [details] [associations]
symbol:SPO_1679 "DNA-binding response regulator CtrA"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034815 RefSeq:YP_166918.1
ProteinModelPortal:Q5LST7 GeneID:3194546 KEGG:sil:SPO1679
PATRIC:23376683 KO:K13584 OMA:PDMNGHE ProtClustDB:CLSK863578
Uniprot:Q5LST7
Length = 238
Score = 113 (44.8 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 26/79 (32%), Positives = 44/79 (55%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSS-DDRESVIMKSLASGAVFYMVKPVN 60
DL++ D+++P+MNG E+ +++ I P++++S DD ES I K GA Y+ KP +
Sbjct: 46 DLILLDINLPDMNGHEVLRQLRMSRIETPILILSGVDDTESKI-KGFGFGADDYLTKPFH 104
Query: 61 PDALRNVWQYAVTSKKGKS 79
+ L + KG S
Sbjct: 105 REELVARIHAIIRRSKGHS 123
Score = 39 (18.8 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 18/61 (29%), Positives = 26/61 (42%)
Query: 77 GKSIFTEEKSSLANGSSAEKISFLHDIVSGSSMIEEKESKTNSKR--KASKRRKDELEGE 134
GK E SL G++ K FL+ + G ++E E K K K+ + GE
Sbjct: 152 GKEYQMLELLSLRKGTTLTKEMFLNHLYGG---MDEPELKIIDVFICKLRKKLSNATGGE 208
Query: 135 N 135
N
Sbjct: 209 N 209
>TIGR_CMR|CPS_1406 [details] [associations]
symbol:CPS_1406 "DNA-binding response regulator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000792 InterPro:IPR001789
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00196 PRINTS:PR00038
PROSITE:PS00622 PROSITE:PS50043 PROSITE:PS50110 SMART:SM00421
SMART:SM00448 GO:GO:0035556 GO:GO:0043565 GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF46894 eggNOG:COG2197
HOGENOM:HOG000034813 RefSeq:YP_268149.1 ProteinModelPortal:Q485W6
STRING:Q485W6 GeneID:3520462 KEGG:cps:CPS_1406 PATRIC:21466029
OMA:AHRRNMK ProtClustDB:CLSK757301
BioCyc:CPSY167879:GI48-1487-MONOMER Uniprot:Q485W6
Length = 215
Score = 112 (44.5 bits), Expect = 0.00075, P = 0.00075
Identities = 31/125 (24%), Positives = 63/125 (50%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
D+++ D+ MP MNG++ + I E+ V+++S + ++ +GAV Y++K
Sbjct: 56 DVILMDISMPTMNGIDATEIITEQLPETKVLILSMHSNPEFVKSAIQAGAVGYLLKDTTS 115
Query: 62 DALRNVWQYAVTS-KKGKSIFTEEKSSL-----ANGSSAEKISFLHDIVSGSSMIEEKES 115
+ + YA+ + GK+ F+ + L N + +EK++ +V S + + K S
Sbjct: 116 EEI----YYAIKAVANGKTHFSSSIAKLLIDNPVNTNESEKLTTREQVVL-SYLAKGKTS 170
Query: 116 KTNSK 120
K +K
Sbjct: 171 KEIAK 175
>UNIPROTKB|Q4K7Y0 [details] [associations]
symbol:kdpE_2 "KDP operon transcriptional regulatory
protein KdpE" species:220664 "Pseudomonas protegens Pf-5"
[GO:0006813 "potassium ion transport" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 GO:GO:0006813 EMBL:CP000076 GenomeReviews:CP000076_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034815 KO:K07667 RefSeq:YP_261653.1
ProteinModelPortal:Q4K7Y0 SMR:Q4K7Y0 STRING:Q4K7Y0 GeneID:3478684
KEGG:pfl:PFL_4569 PATRIC:19878574 OMA:TEHTHYL
ProtClustDB:CLSK937902 BioCyc:PFLU220664:GIX8-4602-MONOMER
Uniprot:Q4K7Y0
Length = 230
Score = 112 (44.5 bits), Expect = 0.00093, P = 0.00093
Identities = 31/92 (33%), Positives = 53/92 (57%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN- 60
DLVI DL +P+ +G +L E+ ++ +P++V+S+ DRE + +L +GA Y+VKP
Sbjct: 49 DLVIVDLGLPDGDGKQLISELRG-WLAVPILVLSARDREDEKVAALDAGADDYLVKPFGV 107
Query: 61 PDALRNVWQYAVTSKKGKSIFTEEKSSLANGS 92
P+ L + A + G+S S +A G+
Sbjct: 108 PELLARI--RAQLRRHGQSGTAAATSKVAFGA 137
>TAIR|locus:2170723 [details] [associations]
symbol:ARR6 "response regulator 6" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;TAS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;TAS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
pathway" evidence=RCA;IMP;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007623 "circadian rhythm" evidence=RCA]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0005739 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009536 GO:GO:0006355 GO:GO:0006351 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K14492 ProtClustDB:CLSN2684027
EMBL:AB008489 EMBL:AB008491 EMBL:AB009053 EMBL:BT004799
IPI:IPI00547780 PIR:T50857 PIR:T50860 RefSeq:NP_201097.1
UniGene:At.24207 ProteinModelPortal:Q9ZWS6 SMR:Q9ZWS6 IntAct:Q9ZWS6
STRING:Q9ZWS6 EnsemblPlants:AT5G62920.1 GeneID:836412
KEGG:ath:AT5G62920 GeneFarm:4123 TAIR:At5g62920 InParanoid:Q9ZWS6
OMA:DDSQEIK PhylomeDB:Q9ZWS6 Genevestigator:Q9ZWS6
GermOnline:AT5G62920 Uniprot:Q9ZWS6
Length = 186
Score = 109 (43.4 bits), Expect = 0.00095, P = 0.00095
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 1 IDLVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKP 58
++L++TD MP M G EL K+I E F +PV++MSS++ I + L GA +++KP
Sbjct: 80 VNLIMTDYSMPGMTGYELLKKIKESSAFREVPVVIMSSENILPRIDRCLEEGAEDFLLKP 139
Query: 59 V 59
V
Sbjct: 140 V 140
>TIGR_CMR|BA_0994 [details] [associations]
symbol:BA_0994 "response regulator" species:198094
"Bacillus anthracis str. Ames" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR001932 Pfam:PF00072 Pfam:PF07228 PROSITE:PS50110
SMART:SM00331 SMART:SM00448 GO:GO:0003824 GO:GO:0006355
GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0008152 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF81606 HSSP:Q9A5I4
OMA:ERKWGDL RefSeq:NP_843495.1 RefSeq:YP_017622.1
RefSeq:YP_027204.1 ProteinModelPortal:Q81U90 DNASU:1088940
EnsemblBacteria:EBBACT00000010036 EnsemblBacteria:EBBACT00000013718
EnsemblBacteria:EBBACT00000020226 GeneID:1088940 GeneID:2814732
GeneID:2850195 KEGG:ban:BA_0994 KEGG:bar:GBAA_0994 KEGG:bat:BAS0930
HOGENOM:HOG000084736 ProtClustDB:CLSK916048
BioCyc:BANT260799:GJAJ-1008-MONOMER
BioCyc:BANT261594:GJ7F-1053-MONOMER Uniprot:Q81U90
Length = 380
Score = 116 (45.9 bits), Expect = 0.00098, P = 0.00098
Identities = 30/94 (31%), Positives = 56/94 (59%)
Query: 1 IDLVITDLHMPEMNGLE----LQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV 56
IDL++ D+ MPE++GLE LQKE E+F +P++ +++ + + + ++L GA+ Y+
Sbjct: 53 IDLILLDIMMPEIDGLEVCRRLQKE--EKFKDIPIIFVTALEDANKLAEALDIGAMDYIT 110
Query: 57 KPVNPDALRNVWQYAVTSKKGKSIFTEEKSSLAN 90
KP+N L + A+ K + E++ +L N
Sbjct: 111 KPINKVELLARMRVALCLKSELNWHKEQEENLRN 144
>UNIPROTKB|P0AF28 [details] [associations]
symbol:narL "NarL" species:83333 "Escherichia coli K-12"
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA] [GO:0042128 "nitrate assimilation"
evidence=IEA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IMP] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000160
"phosphorelay signal transduction system" evidence=IEA]
InterPro:IPR000792 InterPro:IPR001789 InterPro:IPR016032
Pfam:PF00072 Pfam:PF00196 PRINTS:PR00038 PROSITE:PS00622
PROSITE:PS50043 PROSITE:PS50110 SMART:SM00421 SMART:SM00448
GO:GO:0005524 GO:GO:0006355 GO:GO:0035556 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 SUPFAM:SSF46894 GO:GO:0042128 eggNOG:COG2197
HOGENOM:HOG000034813 EMBL:X69189 EMBL:X13360 EMBL:M24910
EMBL:X14884 PIR:S09285 RefSeq:NP_415739.1 RefSeq:YP_489491.1
PDB:1A04 PDB:1JE8 PDB:1RNL PDB:1ZG1 PDB:1ZG5 PDBsum:1A04
PDBsum:1JE8 PDBsum:1RNL PDBsum:1ZG1 PDBsum:1ZG5
ProteinModelPortal:P0AF28 SMR:P0AF28 DIP:DIP-35941N IntAct:P0AF28
PRIDE:P0AF28 EnsemblBacteria:EBESCT00000003408
EnsemblBacteria:EBESCT00000014443 GeneID:12932638 GeneID:945795
KEGG:ecj:Y75_p1196 KEGG:eco:b1221 PATRIC:32117700 EchoBASE:EB0637
EcoGene:EG10643 KO:K07684 OMA:NHEDDVV ProtClustDB:PRK10651
BioCyc:EcoCyc:NARL-MONOMER BioCyc:ECOL316407:JW1212-MONOMER
EvolutionaryTrace:P0AF28 Genevestigator:P0AF28 Uniprot:P0AF28
Length = 216
Score = 111 (44.1 bits), Expect = 0.00099, P = 0.00099
Identities = 31/104 (29%), Positives = 56/104 (53%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
DL++ DL+MP MNGLE ++ E+ + ++V S + E ++ +L GA Y++K + P
Sbjct: 54 DLILLDLNMPGMNGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEP 113
Query: 62 -DALRNVWQYAVTSKKGKSIFTEEKSS-LANGSSAEKISFLHDI 103
D L+ + Q A G+ + +E + LA A + + D+
Sbjct: 114 EDLLKALHQAAA----GEMVLSEALTPVLAASLRANRATTERDV 153
>UNIPROTKB|Q485M3 [details] [associations]
symbol:flrC "Flagellar regulatory protein C" species:167879
"Colwellia psychrerythraea 34H" [GO:0001539 "ciliary or flagellar
motility" evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0030092 "regulation of flagellum assembly"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0019861 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG2204 HOGENOM:HOG000058489 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539
GO:GO:0030092 RefSeq:YP_268242.1 ProteinModelPortal:Q485M3
STRING:Q485M3 GeneID:3520612 KEGG:cps:CPS_1500 PATRIC:21466207
KO:K10943 OMA:FRETRND ProtClustDB:CLSK874687
BioCyc:CPSY167879:GI48-1581-MONOMER Uniprot:Q485M3
Length = 446
Score = 117 (46.2 bits), Expect = 0.00099, P = 0.00099
Identities = 32/100 (32%), Positives = 53/100 (53%)
Query: 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
+D+VI+D+ M M+GL L K I +LPV++M++ ++++ GA Y+ KP
Sbjct: 48 VDIVISDVQMGGMSGLSLLKSIKNHHANLPVLLMTAFGTIDDAVQAMKDGACNYIAKPFA 107
Query: 61 PDALRN-VWQYAVTSKKGKSI-FTEEKSSLANGSSAEKIS 98
P L N V QY K+ +K SL + A+K++
Sbjct: 108 PQVLLNMVSQYIPPQVVNKNDPIVADKRSLELLTLAKKVA 147
>TIGR_CMR|CPS_1500 [details] [associations]
symbol:CPS_1500 "flagellar regulatory protein C"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0030092 "regulation
of flagellum assembly" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0019861 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539 GO:GO:0030092
RefSeq:YP_268242.1 ProteinModelPortal:Q485M3 STRING:Q485M3
GeneID:3520612 KEGG:cps:CPS_1500 PATRIC:21466207 KO:K10943
OMA:FRETRND ProtClustDB:CLSK874687
BioCyc:CPSY167879:GI48-1581-MONOMER Uniprot:Q485M3
Length = 446
Score = 117 (46.2 bits), Expect = 0.00099, P = 0.00099
Identities = 32/100 (32%), Positives = 53/100 (53%)
Query: 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
+D+VI+D+ M M+GL L K I +LPV++M++ ++++ GA Y+ KP
Sbjct: 48 VDIVISDVQMGGMSGLSLLKSIKNHHANLPVLLMTAFGTIDDAVQAMKDGACNYIAKPFA 107
Query: 61 PDALRN-VWQYAVTSKKGKSI-FTEEKSSLANGSSAEKIS 98
P L N V QY K+ +K SL + A+K++
Sbjct: 108 PQVLLNMVSQYIPPQVVNKNDPIVADKRSLELLTLAKKVA 147
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.131 0.378 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 566 550 0.00097 119 3 11 23 0.47 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 122
No. of states in DFA: 612 (65 KB)
Total size of DFA: 295 KB (2153 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 57.68u 0.16s 57.84t Elapsed: 00:00:03
Total cpu time: 57.69u 0.16s 57.85t Elapsed: 00:00:03
Start: Fri May 10 17:47:35 2013 End: Fri May 10 17:47:38 2013
WARNINGS ISSUED: 1