BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040406
(566 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family
Of Plant Myb-Related Dna Binding Motifs Of The
Arabidopsis Response Regulators
Length = 64
Score = 92.0 bits (227), Expect = 7e-19, Method: Composition-based stats.
Identities = 40/63 (63%), Positives = 53/63 (84%)
Query: 138 APKKAKVVWTNSLHNRFLQAIRHITLEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLK 197
A KK +V+WT+ LHN+FL A+ H+ +E+AVPKKIL+ MNV LTRENVASHLQK+R+ LK
Sbjct: 2 AQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALK 61
Query: 198 RVA 200
+V+
Sbjct: 62 KVS 64
>pdb|3GWG|A Chain A, Crystal Structure Of Chey Of Helicobacter Pylori
pdb|3H1E|A Chain A, Crystal Structure Of Mg(2+) And Beh(3)(-)-Bound Chey Of
Heli Pylori
Length = 129
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 45/65 (69%), Gaps = 2/65 (3%)
Query: 3 LVITDLHMPEMNGLELQKEI--NEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
++ITD +MPEMNGL+L K++ + F +P+++++++ ++ ++ +L +G Y+VKP
Sbjct: 54 VLITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFT 113
Query: 61 PDALR 65
P L+
Sbjct: 114 PQVLK 118
>pdb|3H1G|A Chain A, Crystal Structure Of Chey Mutant T84a Of Helicobacter
Pylori
Length = 129
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 45/65 (69%), Gaps = 2/65 (3%)
Query: 3 LVITDLHMPEMNGLELQKEI--NEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
++ITD +MPEMNGL+L K++ + F +P+++++++ ++ ++ +L +G Y+VKP
Sbjct: 54 VLITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFT 113
Query: 61 PDALR 65
P L+
Sbjct: 114 PQVLK 118
>pdb|3TO5|A Chain A, High Resolution Structure Of Chey3 From Vibrio Cholerae
Length = 134
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 2 DLVITDLHMPEMNGLELQKEI--NEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPV 59
D V+TD +MP M G++L K I +EE HLPV++++++ + I+++ +G Y+VKP
Sbjct: 59 DFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPF 118
Query: 60 NPDALR 65
L+
Sbjct: 119 TAATLK 124
>pdb|3H1F|A Chain A, Crystal Structure Of Chey Mutant D53a Of Helicobacter
Pylori
Length = 129
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 3 LVITDLHMPEMNGLELQKEI--NEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
++IT +MPEMNGL+L K++ + F +P+++++++ ++ ++ +L +G Y+VKP
Sbjct: 54 VLITAWNMPEMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFT 113
Query: 61 PDALR 65
P L+
Sbjct: 114 PQVLK 118
>pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From
Bacillus Subtilis
Length = 136
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 40/60 (66%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
DL++ D+ +P+++G+E+ K++ ++ + P++++++ D E + L GA YM KP +P
Sbjct: 49 DLIVLDVMLPKLDGIEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSP 108
>pdb|3JTE|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein From Clostridium Thermocellum
Length = 143
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSD-DRESVIMKSLASGAVFYMVKPV 59
ID+VITD+ MP+++G+++ +EI + H+ V++++ D ++ I+ ++ GA Y+ KPV
Sbjct: 50 IDVVITDMKMPKLSGMDILREIKKITPHMAVIILTGHGDLDNAIL-AMKEGAFEYLRKPV 108
Query: 60 NPDALRNVWQYAVTSKK 76
L A+ KK
Sbjct: 109 TAQDLSIAINNAINRKK 125
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 3 LVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
VI+D +MP M+GLEL K I + LPV++++++ ++ I+ + +GA Y+VKP
Sbjct: 52 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 111
Query: 61 PDAL 64
P L
Sbjct: 112 PATL 115
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 3 LVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
VI+D +MP M+GLEL K I + LPV++++++ ++ I+ + +GA Y+VKP
Sbjct: 53 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 112
Query: 61 PDAL 64
P L
Sbjct: 113 PATL 116
>pdb|3EQ2|A Chain A, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3EQ2|B Chain B, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPV 59
DLVI DL P+++GLEL + I + P++V+S S +++L GA Y++KP+
Sbjct: 51 DLVICDLRXPQIDGLELIRRIRQTASETPIIVLSGAGVXSDAVEALRLGAADYLIKPL 108
>pdb|1U0S|Y Chain Y, Chemotaxis Kinase Chea P2 Domain In Complex With Response
Regulator Chey From The Thermophile Thermotoga Maritima
Length = 118
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 41/60 (68%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
D+V D+ MPEMNG++ KEI + + ++V S+ +++++++++ +GA ++VKP P
Sbjct: 48 DIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQP 107
>pdb|3TMY|A Chain A, Chey From Thermotoga Maritima (Mn-Iii)
pdb|3TMY|B Chain B, Chey From Thermotoga Maritima (Mn-Iii)
pdb|4TMY|A Chain A, Chey From Thermotoga Maritima (mg-iv)
pdb|4TMY|B Chain B, Chey From Thermotoga Maritima (mg-iv)
pdb|1TMY|A Chain A, Chey From Thermotoga Maritima (Apo-I)
pdb|2TMY|A Chain A, Chey From Thermotoga Maritima (Apo-Ii)
Length = 120
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 41/60 (68%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
D+V D+ MPEMNG++ KEI + + ++V S+ +++++++++ +GA ++VKP P
Sbjct: 49 DIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQP 108
>pdb|3M6M|D Chain D, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|E Chain E, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|F Chain F, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
Length = 143
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 2 DLVITDLHMPEMNGLELQKEIN----EEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVK 57
D VI DLHMP MNGL++ K++ + PV+V+S+D I +GA ++ K
Sbjct: 60 DAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAK 119
Query: 58 PV 59
PV
Sbjct: 120 PV 121
>pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 36/61 (59%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
D++++D+ MP M+GL L K+I + LPV++M++ + + GA Y+ KP +
Sbjct: 49 DVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDI 108
Query: 62 D 62
D
Sbjct: 109 D 109
>pdb|1J56|A Chain A, Minimized Average Structure Of Beryllofluoride-Activated
Ntrc Receiver Domain: Model Structure Incorporating
Active Site Contacts
pdb|1KRX|A Chain A, Solution Structure Of Beryllofluoride-Activated Ntrc
Receiver Domain: Model Structures Incorporating Active
Site Contacts
pdb|1NTR|A Chain A, Solution Structure Of The N-Terminal Receiver Domain Of
Ntrc
Length = 124
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 36/61 (59%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
D++++D+ MP M+GL L K+I + LPV++M++ + + GA Y+ KP +
Sbjct: 49 DVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDI 108
Query: 62 D 62
D
Sbjct: 109 D 109
>pdb|3F7A|A Chain A, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3F7A|B Chain B, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPV 59
DLVI DL P+++GLEL + I + P++V+S S +++L GA Y++KP+
Sbjct: 51 DLVICDLRXPQIDGLELIRRIRQTASETPIIVLSGAGVMSDAVEALRLGAADYLIKPL 108
>pdb|1KRW|A Chain A, Solution Structure And Backbone Dynamics Of
Beryllofluoride- Activated Ntrc Receiver Domain
Length = 124
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 36/61 (59%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
D++++D+ MP M+GL L K+I + LPV++M++ + + GA Y+ KP +
Sbjct: 49 DVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDI 108
Query: 62 D 62
D
Sbjct: 109 D 109
>pdb|3EOD|A Chain A, Crystal Structure Of N-Terminal Domain Of E. Coli Rssb
Length = 130
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPV 59
DL+I D+ MP MNGL+L + I PV+V+S+ + + I K+L G ++KPV
Sbjct: 53 DLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPV 110
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 3 LVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
VI+D +MP M+GLEL K I + LPV++++S+ ++ I+ + +GA Y+VKP
Sbjct: 53 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTSEAKKENIIAAAQAGASGYVVKPFT 112
Query: 61 PDAL 64
L
Sbjct: 113 AATL 116
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 3 LVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
VI+D +MP M+GLEL K I + LPV++++++ ++ I+ + +GA Y+VKP
Sbjct: 52 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 111
Query: 61 PDALR 65
L
Sbjct: 112 AATLE 116
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 3 LVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
VI+D +MP M+GLEL K I + LPV++++++ ++ I+ + +GA Y+VKP
Sbjct: 53 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTTEAKKENIIAAAQAGASGYVVKPFT 112
Query: 61 PDAL 64
L
Sbjct: 113 AATL 116
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 3 LVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
VI+D +MP M+GLEL K I + LPV++++++ ++ I+ + +GA Y+VKP
Sbjct: 53 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 112
Query: 61 PDAL 64
L
Sbjct: 113 AATL 116
>pdb|1XHE|A Chain A, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
pdb|1XHE|B Chain B, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
Length = 123
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
I+LVI D+++P NGL L +E+ E+ ++ +M ++ D E + L GA Y+ KP N
Sbjct: 48 INLVIMDINLPGKNGLLLARELREQ-ANVALMFLTGRDNEVDKILGLEIGADDYITKPFN 106
Query: 61 PDAL 64
P L
Sbjct: 107 PREL 110
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And
Dynamics Of Chemotaxis Y Protein Using Three-And
Four-Dimensional Heteronuclear (13c,15n) Nmr
Spectroscopy
Length = 128
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 3 LVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
VI+D +MP M+GLEL K I + LPV++++++ ++ I+ + +GA Y+VKP
Sbjct: 52 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 111
Query: 61 PDAL 64
L
Sbjct: 112 AATL 115
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 3 LVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
VI+D +MP M+GLEL K I + LPV++++++ ++ I+ + +GA Y+VKP
Sbjct: 52 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 111
Query: 61 PDAL 64
L
Sbjct: 112 AATL 115
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 3 LVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
VI+D +MP M+GLEL K I + LPV++++++ ++ I+ + +GA Y+VKP
Sbjct: 51 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 110
Query: 61 PDAL 64
L
Sbjct: 111 AATL 114
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 3 LVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
VI+D MP M+GLEL K I + LPV++++++ ++ I+ + +GA Y+VKP
Sbjct: 53 FVISDWRMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 112
Query: 61 PDAL 64
L
Sbjct: 113 AATL 116
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 3 LVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
VI+D +MP M+GLEL K I + LPV++++++ ++ I+ + +GA Y+VKP
Sbjct: 54 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 113
Query: 61 PDAL 64
L
Sbjct: 114 AATL 117
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 3 LVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
VI+D +MP M+GLEL K I + LPV++++++ ++ I+ + +GA Y+VKP
Sbjct: 52 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 111
Query: 61 PDAL 64
L
Sbjct: 112 AATL 115
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein
In Aqueous Solution By Nuclear Magnetic Resonance
Methods
Length = 129
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 3 LVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
VI+D +MP M+GLEL K I + LPV++++++ ++ I+ + +GA Y+VKP
Sbjct: 53 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 112
Query: 61 PDAL 64
L
Sbjct: 113 AATL 116
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 3 LVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
VI+D +MP M+GLEL K I + LPV++++++ ++ I+ + +GA Y+VKP
Sbjct: 54 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 113
Query: 61 PDAL 64
L
Sbjct: 114 AATL 117
>pdb|2FKA|A Chain A, Crystal Structure Of Mg(2+) And Bef(3)(-)-Bound Chey In
Complex With Chez(200-214) Solved From A F432 Crystal
Grown In Caps (Ph 10.5)
pdb|2FLK|A Chain A, Crystal Structure Of Chey In Complex With Chez(200-214)
Solved From A F432 Crystal Grown In Caps (Ph 10.5)
pdb|2FLW|A Chain A, Crystal Structure Of Mg2+ And Bef3- Ound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Hepes (ph 7.5)
pdb|2FMF|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Hepes (ph 7.5)
pdb|2FMH|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Tris (Ph 8.4)
pdb|2FMI|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Tris (Ph 8.4)
pdb|2FMK|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A P2(1)2(1)2 Crystal Grown
In Mes (Ph 6.0)
Length = 129
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 3 LVITDLHMPEMNGLELQKEI--NEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
+I+D +MP M+GLEL K I + LPV++++++ ++ I+ + +GA Y+VKP
Sbjct: 53 FIISDWNMPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 112
Query: 61 PDAL 64
L
Sbjct: 113 AATL 116
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 3 LVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
VI+D +MP M+GLEL K I + LPV++++++ ++ I+ + +GA Y+VKP
Sbjct: 49 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 108
Query: 61 PDAL 64
L
Sbjct: 109 AATL 112
>pdb|2CHE|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And Mechanism Of
Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2CHF|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And The Mechanism
Of Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2PL9|A Chain A, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|B Chain B, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|C Chain C, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PMC|A Chain A, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|B Chain B, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|C Chain C, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|D Chain D, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
Length = 128
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 3 LVITDLHMPEMNGLELQKEI--NEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
+I+D +MP M+GLEL K I + LPV++++++ ++ I+ + +GA Y+VKP
Sbjct: 52 FIISDWNMPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 111
Query: 61 PDAL 64
L
Sbjct: 112 AATL 115
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14
Replaced By Gly, Ser 15 Replaced By Gly, And Met 17
Replaced By Gly
Length = 129
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 3 LVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
VI+D +MP M+GLEL K I + LPV++++++ ++ I+ + +GA Y+VKP
Sbjct: 53 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 112
Query: 61 PDAL 64
L
Sbjct: 113 AATL 116
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 3 LVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
VI+D +MP M+GLEL K I + LPV++++++ ++ ++ + +GA Y+VKP
Sbjct: 52 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENVIAAAQAGASGYVVKPFT 111
Query: 61 PDAL 64
L
Sbjct: 112 AATL 115
>pdb|1DC8|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 35/61 (57%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
D++++ + MP M+GL L K+I + LPV++M++ + + GA Y+ KP +
Sbjct: 49 DVLLSXIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDI 108
Query: 62 D 62
D
Sbjct: 109 D 109
>pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active
Conformation
Length = 128
Score = 42.0 bits (97), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 3 LVITDLHMPEMNGLELQKEIN--EEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
VI+D +MP M+GLEL K I LPV++++++ ++ I+ + +GA Y+VKP
Sbjct: 52 FVISDWNMPNMDGLELLKTIRAXXAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 111
Query: 61 PDAL 64
L
Sbjct: 112 AATL 115
>pdb|2CHY|A Chain A, Three-Dimensional Structure Of Chey, The Response
Regulator Of Bacterial Chemotaxis
Length = 128
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 3 LVITDLHMPEMNGLELQKEI--NEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
+I D +MP M+GLEL K I + LPV++++++ ++ I+ + +GA Y+VKP
Sbjct: 52 FIICDWNMPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 111
Query: 61 PDAL 64
L
Sbjct: 112 AATL 115
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 3 LVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
VI+D +MP M+GLEL K I + LPV++++ + ++ I+ + +GA Y+VKP
Sbjct: 53 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTMEAKKENIIAAAQAGASGYVVKPFT 112
Query: 61 PDAL 64
L
Sbjct: 113 AATL 116
>pdb|1DBW|A Chain A, Crystal Structure Of Fixj-N
pdb|1DBW|B Chain B, Crystal Structure Of Fixj-N
pdb|1DCK|A Chain A, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCK|B Chain B, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCM|A Chain A, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
pdb|1DCM|B Chain B, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
Length = 126
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 39/56 (69%)
Query: 3 LVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKP 58
+++TDL MP+M+G+EL + + + I++P +V++ + ++++ +GAV ++ KP
Sbjct: 50 VLVTDLRMPDMSGVELLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKP 105
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 3 LVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
VI+D +MP M+GLEL K I + LPV++ +++ ++ I+ + +GA Y+VKP
Sbjct: 49 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMTTAEAKKENIIAAAQAGASGYVVKPFT 108
Query: 61 PDAL 64
L
Sbjct: 109 AATL 112
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 3 LVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
VI+D +MP M+GLEL K I + LPV++++ + ++ I+ + +GA Y+VKP
Sbjct: 53 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTVEAKKENIIAAAQAGASGYVVKPFT 112
Query: 61 PDAL 64
L
Sbjct: 113 AATL 116
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 3 LVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
VI+D MP M+GLEL K I + LPV+++++ ++ I+ + +GA Y+VKP
Sbjct: 52 FVISDWRMPNMDGLELLKTIRADGAMSALPVLMVTAHAKKENIIAAAQAGASGYVVKPFT 111
Query: 61 PDAL 64
L
Sbjct: 112 AATL 115
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 3 LVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
VI+D +MP M+GLEL K I + LPV+++++ ++ I+ + +GA Y+VKP
Sbjct: 52 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKPFT 111
Query: 61 PDAL 64
L
Sbjct: 112 AATL 115
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 3 LVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
VI+D +MP M+GLEL K I + LPV+++ ++ ++ I+ + +GA Y+VKP
Sbjct: 52 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVVKPFT 111
Query: 61 PDAL 64
L
Sbjct: 112 AATL 115
>pdb|1S8N|A Chain A, Crystal Structure Of Rv1626 From Mycobacterium
Tuberculosis
pdb|1SD5|A Chain A, Crystal Structure Of Rv1626
Length = 205
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
DLVI D+ MP +G++ EI + I P++V+++ + ++ ++ +GA+ Y+VKP +
Sbjct: 60 DLVIMDVKMPRRDGIDAASEIASKRIA-PIVVLTAFSQRDLVERARDAGAMAYLVKPFSI 118
Query: 62 DALRNVWQYAVTSKKGKSIFTEEKSSLANGSSAEKI 97
L + AV+ + + E ++L+ K+
Sbjct: 119 SDLIPAIELAVSRFREITALEGEVATLSERLETRKL 154
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89q
Length = 132
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 3 LVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
VI+D MP M+GLEL K I + LPV+++++ ++ I+ + +GA Y+VKP
Sbjct: 56 FVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTAQAKKENIIAAAQAGASGYVVKPFT 115
Query: 61 PDAL 64
L
Sbjct: 116 AATL 119
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89k
Length = 132
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 3 LVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
VI+D MP M+GLEL K I + LPV+++++ ++ I+ + +GA Y+VKP
Sbjct: 56 FVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTAKAKKENIIAAAQAGASGYVVKPFT 115
Query: 61 PDAL 64
L
Sbjct: 116 AATL 119
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 3 LVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
VI+D +MP M+GLEL K I + LPV++++++ ++ I+ + +GA ++VKP
Sbjct: 52 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGWVVKPFT 111
Query: 61 PDAL 64
L
Sbjct: 112 AATL 115
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 3 LVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
VI+D MP M+GLEL K I + LPV+++++ ++ I+ + +GA Y+VKP
Sbjct: 56 FVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKPFT 115
Query: 61 PDAL 64
L
Sbjct: 116 AATL 119
>pdb|1DZ3|A Chain A, Domain-Swapping In The Sporulation Response Regulator
Spo0a
Length = 130
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLP-VMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
D+++ D+ MP ++GL + + I F H P V+++++ +E V K++ GA ++++KP +
Sbjct: 50 DILLLDIIMPHLDGLAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFD 109
Query: 61 PDAL 64
+ L
Sbjct: 110 MENL 113
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 3 LVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
VI+D MP M+GLEL K I + LPV+++++ ++ I+ + +GA Y+VKP
Sbjct: 52 FVISDWMMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKPFT 111
Query: 61 PDAL 64
L
Sbjct: 112 AATL 115
>pdb|1NXO|A Chain A, Micarec Ph7.0
pdb|1NXP|A Chain A, Micarec Ph4.5
pdb|1NXS|A Chain A, Micarec Ph4.9
pdb|1NXV|A Chain A, Micarec Ph 4.2
pdb|1NXW|A Chain A, Micarec Ph 5.1
pdb|1NXX|A Chain A, Micarec Ph 5.5
pdb|2A9O|A Chain A, Crystal Structures Of An Activated Yycf Homologue, The
Essential Response Regulator From S.Pneumoniae In
Complex With Bef3 And The Effect Of Ph On Bef3 Binding,
Possible Phosphate In The Active Site
pdb|2A9P|A Chain A, Medium Resolution Bef3 Bound Rr02-Rec
pdb|2A9Q|A Chain A, Low Resolution Structure Rr02-rec On Bef3 Bound
Length = 120
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
D++I DL +PE++GLE+ K I + +P++++S+ D E + L GA Y+ KP +
Sbjct: 47 DIIILDLMLPEIDGLEVAKTIRKT-SSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSN 105
Query: 62 DALR 65
L+
Sbjct: 106 RELQ 109
>pdb|2AYZ|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
817-949) Containing Phosphoreceiver Domain
Length = 133
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
ID+V++D++MP M+G L + I + + LPV+ ++++ + L SG + KPV
Sbjct: 53 IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVT 112
Query: 61 PDALRNVWQ-YAVTSKKGK 78
D ++ YA +K +
Sbjct: 113 LDVIKQTLTLYAERVRKSR 131
>pdb|1ZH2|A Chain A, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH2|B Chain B, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH4|A Chain A, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
pdb|1ZH4|B Chain B, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
Length = 121
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKP 58
DL+I DL +P+ +G+E +++ ++ +PV+V+S+ ES + +L +GA Y+ KP
Sbjct: 47 DLIILDLGLPDGDGIEFIRDL-RQWSAVPVIVLSARSEESDKIAALDAGADDYLSKP 102
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 3 LVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
VI+D MP M+GLEL K I + LPV+++++ ++ I+ + +GA Y+VKP
Sbjct: 52 FVISDWKMPNMDGLELLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGASGYVVKPFT 111
Query: 61 PDAL 64
L
Sbjct: 112 AATL 115
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89y
Length = 132
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 3 LVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
VI+D MP M+GLEL K I + LPV+++++ ++ I+ + +GA Y+VKP
Sbjct: 56 FVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGASGYVVKPFT 115
Query: 61 PDAL 64
L
Sbjct: 116 AATL 119
>pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
700-949) Containing Linker Region And Phosphoreceiver
Domain
Length = 254
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
ID+V++D++MP M+G L + I + + LPV+ ++++ + L SG + KPV
Sbjct: 174 IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVT 233
Query: 61 PDALRNVWQ-YAVTSKKGK 78
D ++ YA +K +
Sbjct: 234 LDVIKQTLTLYAERVRKSR 252
>pdb|1XHF|A Chain A, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
pdb|1XHF|B Chain B, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
Length = 123
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
I+LVI D+++P NGL L +E+ E+ ++ + ++ D E + L GA Y+ KP N
Sbjct: 48 INLVIXDINLPGKNGLLLARELREQ-ANVALXFLTGRDNEVDKILGLEIGADDYITKPFN 106
Query: 61 PDAL 64
P L
Sbjct: 107 PREL 110
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 3 LVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
VI+ +MP M+GLEL K I + LPV++++++ ++ I+ + +GA Y+VKP
Sbjct: 53 FVISXWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 112
Query: 61 PDAL 64
L
Sbjct: 113 AATL 116
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 3 LVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
VI+D MP M+GLEL K I + LPV+++++ ++ I+ + +GA Y+VKP
Sbjct: 52 FVISDWMMPNMDGLELLKTIRADGAMSALPVLMVTALAKKENIIAAAQAGASGYVVKPFT 111
Query: 61 PDAL 64
L
Sbjct: 112 AATL 115
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 3 LVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
VI+ +MP M+GLEL K I + LPV++++++ ++ I+ + +GA Y+VKP
Sbjct: 52 FVISXWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 111
Query: 61 PDAL 64
L
Sbjct: 112 AATL 115
>pdb|3Q9S|A Chain A, Crystal Structure Of Rra(1-215) From Deinococcus
Radiodurans
Length = 249
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
DL++ DL +P+ +G ++ + + + LP++V+++ D ++ L GA Y++KP +P
Sbjct: 83 DLILLDLGLPDFDGGDVVQRLRKNSA-LPIIVLTARDTVEEKVRLLGLGADDYLIKPFHP 141
Query: 62 DAL 64
D L
Sbjct: 142 DEL 144
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 3 LVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
VI+ +MP M+GLEL K I + LPV++++++ ++ I+ + +GA Y+VKP
Sbjct: 52 FVISAWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 111
Query: 61 PDAL 64
L
Sbjct: 112 AATL 115
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 3 LVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
VI+D +MP M+GLEL K I + LPV+++ ++ ++ I+ + +GA ++VKP
Sbjct: 52 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGWVVKPFT 111
Query: 61 PDAL 64
L
Sbjct: 112 AATL 115
>pdb|2JVK|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant L66a From Bacillus Subtilis
Length = 132
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 39/65 (60%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
DLV+ D+ +P M+G+E+ K + ++ V++M++ +I +S GA+ + KP +
Sbjct: 49 DLVLLDMKIPGMDGIEIAKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDI 108
Query: 62 DALRN 66
D +R+
Sbjct: 109 DEIRD 113
>pdb|2QXY|A Chain A, Crystal Structure Of A Response Regulator From Thermotoga
Maritima
pdb|2QXY|B Chain B, Crystal Structure Of A Response Regulator From Thermotoga
Maritima
Length = 142
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
IDLV D+ E L L + I EEF V V+S+ + +I+ S+ +GAV Y++KP
Sbjct: 49 IDLVFVDVFEGE-ESLNLIRRIREEFPDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFR 107
Query: 61 PDAL 64
D L
Sbjct: 108 LDYL 111
>pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|D Chain D, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGF|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex
Reveals Insights Into Two-Component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 122
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 2 DLVITDLHMPEMNGLELQKEIN--EEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPV 59
DL++ D+ MP M+G + K++ EE+ +PV+V+++ E +L+ GA M KP
Sbjct: 48 DLIVLDIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPF 107
Query: 60 NP 61
+P
Sbjct: 108 SP 109
>pdb|1D5W|A Chain A, Phosphorylated Fixj Receiver Domain
pdb|1D5W|B Chain B, Phosphorylated Fixj Receiver Domain
pdb|1D5W|C Chain C, Phosphorylated Fixj Receiver Domain
Length = 126
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 38/56 (67%)
Query: 3 LVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKP 58
+++T L MP+M+G+EL + + + I++P +V++ + ++++ +GAV ++ KP
Sbjct: 50 VLVTXLRMPDMSGVELLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKP 105
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Query: 3 LVITDLHMPEMNGLELQKEINEE--FIHLPV-MVMSSDDRESVIMKSLA-SGAVFYMVKP 58
VI+D +MP M+GLEL K I + LPV MV + D E++ K+LA +GA Y+VKP
Sbjct: 53 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEADAENI--KALAQAGASGYVVKP 110
Query: 59 VNPDAL 64
L
Sbjct: 111 FTAATL 116
>pdb|1PUX|A Chain A, Nmr Solution Structure Of Bef3-Activated Spo0f, 20
Conformers
pdb|1FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
20 Structures
pdb|1NAT|A Chain A, Crystal Structure Of Spoof From Bacillus Subtilis
pdb|2FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
Minimized Average Structure
Length = 124
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 39/65 (60%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
DLV+ D+ +P M+G+E+ K + ++ V++M++ +I +S GA+ + KP +
Sbjct: 49 DLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDI 108
Query: 62 DALRN 66
D +R+
Sbjct: 109 DEIRD 113
>pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|F Chain F, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|G Chain G, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|H Chain H, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
Length = 119
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 39/65 (60%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
DLV+ D+ +P M+G+E+ K + ++ V++M++ +I +S GA+ + KP +
Sbjct: 47 DLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDI 106
Query: 62 DALRN 66
D +R+
Sbjct: 107 DEIRD 111
>pdb|3CU5|A Chain A, Crystal Structure Of A Two Component Transcriptional
Regulator Arac From Clostridium Phytofermentans Isdg
pdb|3CU5|B Chain B, Crystal Structure Of A Two Component Transcriptional
Regulator Arac From Clostridium Phytofermentans Isdg
Length = 141
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
++++TD+ MP M+G+EL I + + V+ MS + + ++ A+ Y+ KP++P
Sbjct: 51 NVLLTDVRMPRMDGIELVDNILKLYPDCSVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDP 110
Query: 62 ----DALRNVWQ 69
DAL+ Q
Sbjct: 111 SEIMDALKQSIQ 122
>pdb|3Q15|C Chain C, Crystal Structure Of Raph Complexed With Spo0f
pdb|3Q15|D Chain D, Crystal Structure Of Raph Complexed With Spo0f
Length = 126
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 39/65 (60%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
DLV+ D+ +P M+G+E+ K + ++ V++M++ +I +S GA+ + KP +
Sbjct: 51 DLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDI 110
Query: 62 DALRN 66
D +R+
Sbjct: 111 DEIRD 115
>pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|B Chain B, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|C Chain C, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1PEY|A Chain A, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|B Chain B, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|C Chain C, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
Length = 124
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 39/65 (60%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
DLV+ D+ +P M+G+E+ K + ++ V++M++ +I +S GA+ + KP +
Sbjct: 49 DLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDI 108
Query: 62 DALRN 66
D +R+
Sbjct: 109 DEIRD 113
>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
Length = 128
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 3 LVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
VI+ +MP M+GLEL K I + LPV+++ ++ ++ I+ + +GA Y+VKP
Sbjct: 52 FVISXWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVVKPFT 111
Query: 61 PDAL 64
L
Sbjct: 112 AATL 115
>pdb|3HEB|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
pdb|3HEB|B Chain B, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
Length = 152
Score = 38.1 bits (87), Expect = 0.012, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 3 LVITDLHMPEMNGLELQKEINE--EFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
LV+ DL++P+ G+++ K + E PV+++++ D + I + GA Y+ KPVN
Sbjct: 62 LVLLDLNLPDXTGIDILKLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVN 121
Query: 61 PDALRN 66
+ N
Sbjct: 122 YENFAN 127
>pdb|3HV2|A Chain A, Crystal Structure Of Signal Receiver Domain Of Hd Domain-
Containing Protein From Pseudomonas Fluorescens Pf-5
pdb|3HV2|B Chain B, Crystal Structure Of Signal Receiver Domain Of Hd Domain-
Containing Protein From Pseudomonas Fluorescens Pf-5
Length = 153
Score = 38.1 bits (87), Expect = 0.012, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVF-YMVKP 58
+DLVI+ H+P+M+G L I++++ ++++ D +I K++ G ++ Y+ KP
Sbjct: 59 VDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTGDPDLKLIAKAINEGEIYRYLSKP 117
>pdb|1QMP|A Chain A, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|B Chain B, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|C Chain C, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|D Chain D, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
Length = 130
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLP-VMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
D+++ + MP ++GL + + I F H P V+++++ +E V K++ GA ++++KP +
Sbjct: 50 DILLLXIIMPHLDGLAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFD 109
Query: 61 PDAL 64
+ L
Sbjct: 110 MENL 113
>pdb|1NXT|A Chain A, Micarec Ph 4.0
pdb|2A9R|A Chain A, Rr02-Rec Phosphate In The Active Site
Length = 120
Score = 37.7 bits (86), Expect = 0.015, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
D++I L +PE++GLE+ K I + +P++++S+ D E + L GA Y+ KP +
Sbjct: 47 DIIILXLMLPEIDGLEVAKTIRKT-SSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSN 105
Query: 62 DALR 65
L+
Sbjct: 106 RELQ 109
>pdb|3CFY|A Chain A, Crystal Structure Of Signal Receiver Domain Of Putative
Luxo Repressor Protein From Vibrio Parahaemolyticus
Length = 137
Score = 37.7 bits (86), Expect = 0.017, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 3 LVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPD 62
L+I DL +P+M+G ++ IN+ I V++ ++ + + + GA ++ KP+N D
Sbjct: 51 LIILDLKLPDMSGEDVLDWINQNDIPTSVIIATAHGSVDLAVNLIQKGAEDFLEKPINAD 110
Query: 63 ALR 65
L+
Sbjct: 111 RLK 113
>pdb|2PKX|A Chain A, E.Coli Response Regulator Phop Receiver Domain
pdb|2PKX|B Chain B, E.Coli Response Regulator Phop Receiver Domain
pdb|2PL1|A Chain A, Berrylium Fluoride Activated Receiver Domain Of E.Coli
Phop
Length = 121
Score = 37.4 bits (85), Expect = 0.021, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 34/57 (59%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKP 58
D+ I DL +P+ +GL L + + LP++V+++ + ++ L++GA Y+ KP
Sbjct: 46 DIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKP 102
>pdb|2JVI|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant H101a From Bacillus Subtilis
Length = 132
Score = 37.4 bits (85), Expect = 0.022, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 38/65 (58%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
DLV+ D+ +P M+G+E+ K + ++ V++M++ +I +S GA+ KP +
Sbjct: 49 DLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTAFAKPFDI 108
Query: 62 DALRN 66
D +R+
Sbjct: 109 DEIRD 113
>pdb|3NHZ|A Chain A, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|B Chain B, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|C Chain C, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|D Chain D, Structure Of N-Terminal Domain Of Mtra
Length = 125
Score = 37.4 bits (85), Expect = 0.024, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
DLV+ DL +P MNG+++ + + + VM+ + D V++ L SGA Y++KP P
Sbjct: 51 DLVLLDLMLPGMNGIDVCRVLRADSGVPIVMLTAKTDTVDVVL-GLESGADDYIMKPFKP 109
>pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of
Yycf
Length = 120
Score = 37.4 bits (85), Expect = 0.025, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
DL++ D+ +P +G+E+ +E+ +++ +P++++++ D E + L GA Y+ KP +
Sbjct: 48 DLILLDIMLPNKDGVEVCREVRKKY-DMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFST 106
Query: 62 DAL 64
L
Sbjct: 107 REL 109
>pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
pdb|2ZWM|B Chain B, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
Length = 130
Score = 37.4 bits (85), Expect = 0.025, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
DL++ D+ +P +G+E+ +E+ +++ +P++++++ D E + L GA Y+ KP +
Sbjct: 48 DLILLDIMLPNKDGVEVCREVRKKY-DMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFST 106
Query: 62 DAL 64
L
Sbjct: 107 REL 109
>pdb|3GT7|A Chain A, Crystal Structure Of Signal Receiver Domain Of Signal
Transduction Histidine Kinase From Syntrophus
Aciditrophicus
Length = 154
Score = 37.4 bits (85), Expect = 0.026, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 54/98 (55%), Gaps = 7/98 (7%)
Query: 2 DLVITDLHMPEMNGLELQKEI--NEEFIHLPVMVMS--SDDRESVIMKSLASGAVFYMVK 57
DL+I+D+ MPEM+G L + + + +PV++++ SD R+ +++SL GA ++ K
Sbjct: 53 DLIISDVLMPEMDGYALCRWLKGQPDLRTIPVILLTILSDPRD--VVRSLECGADDFITK 110
Query: 58 PVNPDAL-RNVWQYAVTSKKGKSIFTEEKSSLANGSSA 94
P L +V + K+ + ++ E +LA G+
Sbjct: 111 PCKDVVLASHVKRLLSGVKRTEERYSRESITLAFGNEG 148
>pdb|1L5Y|A Chain A, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Y|B Chain B, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Z|A Chain A, Crystal Structure Of The E121k Substitution Of The
Receiver Domain Of Sinorhizobium Meliloti Dctd
Length = 155
Score = 37.0 bits (84), Expect = 0.027, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 3 LVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPD 62
+VI+D+ MP M+GL L ++I LP+++++ + ++++ GA ++ KP D
Sbjct: 50 IVISDIRMPGMDGLALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAAD 109
Query: 63 ALRNVWQYAVTSKKGKSIFTEEKS 86
L Q A ++K + + E +S
Sbjct: 110 RLV---QSARRAEKKRRLVMENRS 130
>pdb|3NNS|A Chain A, Bef3 Activated Drrb Receiver Domain
pdb|3NNS|B Chain B, Bef3 Activated Drrb Receiver Domain
Length = 117
Score = 37.0 bits (84), Expect = 0.030, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 35/62 (56%)
Query: 3 LVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPD 62
+V+ D+ +P+ +G E+ + I E V++++ + ++K +GA Y+ KP NP+
Sbjct: 46 VVVLDVXLPDYSGYEICRXIKETRPETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPE 105
Query: 63 AL 64
L
Sbjct: 106 IL 107
>pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-digmp
pdb|1W25|B Chain B, Response Regulator Pled In Complex With C-digmp
pdb|2V0N|A Chain A, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
pdb|2V0N|B Chain B, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
Length = 459
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query: 2 DLVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPV 59
D+++ D+ MP M+G + +++ ++ H+PV+++++ D ++ L SGA ++ KP+
Sbjct: 47 DIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPI 106
Query: 60 N 60
+
Sbjct: 107 D 107
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 1 IDLVITDLHMPEMNGLELQKEIN--EEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKP 58
+DLVI + +GL + E LPV+ M D ++K+L G + +P
Sbjct: 195 VDLVIVNAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRP 254
Query: 59 VNPDALRNVWQYAVTSKK 76
++P L + + K+
Sbjct: 255 IDPQELSARVKTQIQRKR 272
>pdb|3CWO|X Chain X, A BetaALPHA-Barrel Built By The Combination Of Fragments
From Different Folds
Length = 237
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPV-- 59
D+V D+ MPEMNG++ KEI + + ++V S+ +++++++++ +GA ++V
Sbjct: 27 DIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVNTAAV 86
Query: 60 -NPDALRNVWQ 69
NP + + Q
Sbjct: 87 ENPSLITQIAQ 97
>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
Length = 128
Score = 37.0 bits (84), Expect = 0.032, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 3 LVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
VI+ +MP M+GLEL K I + LPV+++ ++ ++ I+ + +GA ++VKP
Sbjct: 52 FVISXWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGWVVKPFT 111
Query: 61 PDAL 64
L
Sbjct: 112 AATL 115
>pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
pdb|2WB4|B Chain B, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
Length = 459
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query: 2 DLVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPV 59
D+++ D+ MP M+G + +++ ++ H+PV+++++ D ++ L SGA ++ KP+
Sbjct: 48 DIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPI 107
Query: 60 N 60
+
Sbjct: 108 D 108
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 1 IDLVITDLHMPEMNGLELQKEIN--EEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKP 58
+DLVI + +GL + E LPV+ M D ++K+L G + +P
Sbjct: 196 VDLVIVNAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRP 255
Query: 59 VNPDALRNVWQYAVTSKK 76
++P L + + K+
Sbjct: 256 IDPQELSARVKTQIQRKR 273
>pdb|1P2F|A Chain A, Crystal Structure Analysis Of Response Regulator Drrb, A
Thermotoga Maritima OmprPHOB HOMOLOG
Length = 220
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
Query: 3 LVITDLHMPEMNGLELQKEINEEFIHLPVMVMS--SDDRESVIMKSLASGAVFYMVKPVN 60
+V+ D+ +P+ +G E+ + I E V++++ SDD ESV +K +GA Y+ KP N
Sbjct: 46 VVVLDVXLPDYSGYEICRXIKETRPETWVILLTLLSDD-ESV-LKGFEAGADDYVTKPFN 103
Query: 61 PDA-LRNVWQYAVTSKKG 77
P+ L V ++ KKG
Sbjct: 104 PEILLARVKRFLEREKKG 121
>pdb|3C97|A Chain A, Crystal Structure Of The Response Regulator Receiver
Domain Of A Signal Transduction Histidine Kinase From
Aspergillus Oryzae
Length = 140
Score = 36.6 bits (83), Expect = 0.037, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 16/75 (21%)
Query: 2 DLVITDLHMPEMNGLELQKEI-NEEFIH----LPVMVMSS----DDRESVIMKSLASGAV 52
D++I D+ MP M+GLE EI N E H ++ +++ DDR +
Sbjct: 56 DVIIMDIQMPVMDGLEAVSEIRNYERTHNTKRASIIAITADTIDDDRPGAELDE------ 109
Query: 53 FYMVKPVNPDALRNV 67
Y+ KP+NP+ LR+V
Sbjct: 110 -YVSKPLNPNQLRDV 123
>pdb|3T8Y|A Chain A, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
pdb|3T8Y|B Chain B, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
Length = 164
Score = 36.6 bits (83), Expect = 0.037, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMS-SDDRESVIMKSLASGAVFYMVKP 58
D++ D+ MP +NG+E K I ++ +MV S +++ ++ +++L +GAV ++ KP
Sbjct: 73 DVITMDIEMPNLNGIEALKLIMKKAPTRVIMVSSLTEEGAAITIEALRNGAVDFITKP 130
>pdb|2JVJ|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant I90a From Bacillus Subtilis
Length = 132
Score = 36.6 bits (83), Expect = 0.038, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 38/65 (58%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
DLV+ D+ +P M+G+E+ K + ++ V++M++ + +S GA+ + KP +
Sbjct: 49 DLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMAQESKELGALTHFAKPFDI 108
Query: 62 DALRN 66
D +R+
Sbjct: 109 DEIRD 113
>pdb|2LLE|A Chain A, Computational Design Of An Eight-Stranded
(BetaALPHA)-Barrel From Fragments Of Different Folds
Length = 234
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 38/55 (69%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV 56
D+V D+ MPEMNG++ KEI + + ++V S+ +++++++++ +GA ++V
Sbjct: 27 DIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKGFIV 81
>pdb|1ZES|A Chain A, Bef3- Activated Phob Receiver Domain
pdb|1ZES|B Chain B, Bef3- Activated Phob Receiver Domain
pdb|1ZES|C Chain C, Bef3- Activated Phob Receiver Domain
Length = 125
Score = 36.6 bits (83), Expect = 0.042, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFI--HLPVMVMSSDDRESVIMKSLASGAVFYMVKPV 59
DL++ D +P +G++ K + E + +PV+++++ E ++ L +GA Y+ KP
Sbjct: 48 DLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPF 107
Query: 60 NPDAL 64
+P L
Sbjct: 108 SPKEL 112
>pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli
pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli
pdb|2IYN|A Chain A, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|B Chain B, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|C Chain C, The Co-Factor-Induced Pre-Active Conformation In Phob
Length = 127
Score = 36.6 bits (83), Expect = 0.042, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFI--HLPVMVMSSDDRESVIMKSLASGAVFYMVKPV 59
DL++ D +P +G++ K + E + +PV+++++ E ++ L +GA Y+ KP
Sbjct: 48 DLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPF 107
Query: 60 NPDAL 64
+P L
Sbjct: 108 SPKEL 112
>pdb|3NNN|A Chain A, Bef3 Activated Drrd Receiver Domain
pdb|3NNN|B Chain B, Bef3 Activated Drrd Receiver Domain
Length = 122
Score = 36.2 bits (82), Expect = 0.045, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 34/59 (57%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
D+VI D+ +P +G E+ K + E ++ PV+++++ +K L GA Y+ KP +
Sbjct: 48 DVVILDIMLPVHDGWEILKSMRESGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFD 106
>pdb|3GL9|A Chain A, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|B Chain B, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|C Chain C, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|D Chain D, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
Length = 122
Score = 36.2 bits (82), Expect = 0.045, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 2 DLVITDLHMPEMNGLELQKEINE--EFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPV 59
DL++ + MP M+G + K++ E E+ +PV+V+++ E +L+ GA M KP
Sbjct: 48 DLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPF 107
Query: 60 NP 61
+P
Sbjct: 108 SP 109
>pdb|3HDG|A Chain A, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|B Chain B, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|D Chain D, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|E Chain E, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
Length = 137
Score = 36.2 bits (82), Expect = 0.048, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 32/63 (50%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
D++ITD+ P++ GLE I V+V+S+ +K++ G ++ KP+ P
Sbjct: 53 DVIITDIRXPKLGGLEXLDRIKAGGAKPYVIVISAFSEXKYFIKAIELGVHLFLPKPIEP 112
Query: 62 DAL 64
L
Sbjct: 113 GRL 115
>pdb|1M5T|A Chain A, Crystal Structure Of The Response Regulator Divk
pdb|1M5U|A Chain A, Crystal Structure Of The Response Regulator Divk.
Structure At Ph 8.0 In The Apo-Form
pdb|1MAV|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 6.0
In Complex With Mn2+
pdb|1MB0|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.0
In Complex With Mn2+
pdb|1MB3|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.5
In Complex With Mg2+
Length = 124
Score = 36.2 bits (82), Expect = 0.049, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 2 DLVITDLHMPEMNGLELQKEINE--EFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPV 59
DL++ D+ +PE++GLE+ K + E + H+PV+ +++ + + G Y+ KP+
Sbjct: 47 DLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPI 106
Query: 60 N 60
+
Sbjct: 107 S 107
>pdb|3B2N|A Chain A, Crystal Structure Of Dna-binding Response Regulator, Luxr
Family, From Staphylococcus Aureus
Length = 133
Score = 35.8 bits (81), Expect = 0.059, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 35/56 (62%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVK 57
++VI D+ MP M GLE+ EI ++ +++ V+++++ R K++ + Y++K
Sbjct: 51 NVVILDIEMPGMTGLEVLAEIRKKHLNIKVIIVTTFKRPGYFEKAVVNDVDAYVLK 106
>pdb|1YIO|A Chain A, Crystallographic Structure Of Response Regulator Styr From
Pseudomonas Fluorescens
pdb|1ZN2|A Chain A, Low Resolution Structure Of Response Regulator Styr
Length = 208
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 38/61 (62%)
Query: 4 VITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDA 63
++ D+ MP M+G+ELQ+++ +P++ +++ + ++++ +GA+ ++ KP A
Sbjct: 52 LVLDMRMPGMSGIELQEQLTAISDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQA 111
Query: 64 L 64
L
Sbjct: 112 L 112
>pdb|2FTK|E Chain E, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|F Chain F, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|G Chain G, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|H Chain H, Berylloflouride Spo0f Complex With Spo0b
Length = 124
Score = 35.8 bits (81), Expect = 0.063, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 38/65 (58%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
DLV+ + +P M+G+E+ K + ++ V++M++ +I +S GA+ + KP +
Sbjct: 49 DLVLLXMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDI 108
Query: 62 DALRN 66
D +R+
Sbjct: 109 DEIRD 113
>pdb|3C3W|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis
Hypoxic Response Regulator Dosr
pdb|3C3W|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis
Hypoxic Response Regulator Dosr
Length = 225
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 35/59 (59%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
D+ + D+ +P+ NG+EL +++ L ++++S + ++ ++ +GA Y+VK +
Sbjct: 49 DVAVLDVRLPDGNGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIK 107
>pdb|1ZGZ|A Chain A, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|B Chain B, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|C Chain C, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|D Chain D, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
Length = 122
Score = 35.8 bits (81), Expect = 0.071, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPV 59
+DL++ D+++P+ NGL L + + E ++V DR I+ L GA Y+ KP+
Sbjct: 47 VDLILLDINLPDENGLXLTRALRERSTVGIILVTGRSDRIDRIV-GLEXGADDYVTKPL 104
>pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domain And Linker Region
Of Dctd From Sinorhizobium Meliloti
Length = 155
Score = 35.4 bits (80), Expect = 0.079, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 3 LVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPD 62
+VI+D+ MP M+GL L ++I LP+++++ + ++++ GA ++ KP D
Sbjct: 50 IVISDIRMPGMDGLALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAAD 109
Query: 63 ALRNVWQYAVTSKKGKSIFTEEKS 86
L Q A +++ + + E +S
Sbjct: 110 RLV---QSARRAEEKRRLVMENRS 130
>pdb|3HZH|A Chain A, Crystal Structure Of The Chex-Chey-Bef3-Mg+2 Complex From
Borrelia Burgdorferi
Length = 157
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
ID+V + MP+M+G+ I E + V+++S+ +E ++ L GA ++VKP++
Sbjct: 84 IDIVTLXITMPKMDGITCLSNIMEFDKNARVIMISALGKEQLVKDCLIKGAKTFIVKPLD 143
>pdb|2JB9|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e.
pdb|2JB9|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e
Length = 127
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFI--HLPVMVMSSDDRESVIMKSLASGAVFYMVKPV 59
DL++ + +P +G++ K + E + +PV+++++ E ++ L +GA Y+ KP
Sbjct: 48 DLILLEWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPF 107
Query: 60 NPDAL 64
+P L
Sbjct: 108 SPKEL 112
>pdb|1U8T|A Chain A, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|B Chain B, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|C Chain C, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|D Chain D, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
Length = 128
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 3 LVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
VI+D + P +GLEL K I + LPV+ ++++ ++ I+ + +GA ++VKP
Sbjct: 52 FVISDWNXPNXDGLELLKTIRADGAXSALPVLXVTAEAKKENIIAAAQAGASGWVVKPFT 111
Query: 61 PDAL 64
L
Sbjct: 112 AATL 115
>pdb|1A04|A Chain A, The Structure Of The NitrateNITRITE RESPONSE REGULATOR
Protein Narl In The Monoclinic C2 Crystal Form
pdb|1A04|B Chain B, The Structure Of The NitrateNITRITE RESPONSE REGULATOR
Protein Narl In The Monoclinic C2 Crystal Form
pdb|1RNL|A Chain A, The NitrateNITRITE RESPONSE REGULATOR PROTEIN NARL FROM
NARL
Length = 215
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 10 MPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP-DALRNVW 68
MP MNGLE ++ E+ + ++V S + E ++ +L GA Y++K + P D L+ +
Sbjct: 61 MPGMNGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALH 120
Query: 69 QYAVTSKKGKSIFTE 83
Q A G+ + +E
Sbjct: 121 QAAA----GEMVLSE 131
>pdb|3I5A|A Chain A, Crystal Structure Of Full-Length Wpsr From Pseudomonas
Syringae
Length = 334
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 3 LVITDLHMPEMNGLELQKEINEEFI--HLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
+++ DL MP ++GL L +E + +P++V+S+ + + + A+GA Y+VK
Sbjct: 64 VILQDLVMPGLDGLTLVREYRSNPLTRDIPIIVLSTKEDPLIKSAAFAAGANDYLVKL-- 121
Query: 61 PDALRNVWQYAVTSKKGKSIFTEEKSSLANGSSAEKI 97
PD + V + S+ ++ +++ A S +++
Sbjct: 122 PDNIELVARIRYHSRSYMTLLQRDEAYRALRVSQQQL 158
>pdb|1K66|A Chain A, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
pdb|1K66|B Chain B, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
Length = 149
Score = 33.5 bits (75), Expect = 0.30, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 3 LVITDLHMPEMNGLELQKEINEEFI--HLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
+++ DL++P +G E+ +EI ++ + +PV++M++ I + Y+VKP+
Sbjct: 65 VILLDLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLE 124
Query: 61 PDALRNVWQ 69
D L Q
Sbjct: 125 IDRLTETVQ 133
>pdb|3BRE|A Chain A, Crystal Structure Of P.Aeruginosa Pa3702
pdb|3BRE|B Chain B, Crystal Structure Of P.Aeruginosa Pa3702
Length = 358
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 3 LVITDLHMPEMNGLELQKEI--NEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
+++ DL MP ++GL L N +P++V+S+ + +V + A+GA Y+VK
Sbjct: 66 VILQDLVMPGVDGLTLLAAYRGNPATRDIPIIVLSTKEEPTVKSAAFAAGANDYLVKL-- 123
Query: 61 PDALRNVWQYAVTSK 75
PDA+ V + S+
Sbjct: 124 PDAIELVARIRYHSR 138
>pdb|4E7O|A Chain A, Crystal Structure Of Receiver Domain Of Putative Narl
Family Response Regulator Spr1814 From Streptococcus
Pneumoniae
pdb|4E7O|B Chain B, Crystal Structure Of Receiver Domain Of Putative Narl
Family Response Regulator Spr1814 From Streptococcus
Pneumoniae
pdb|4E7P|A Chain A, Crystal Structure Of Receiver Domain Of Putative Narl
Family Response Regulator Spr1814 From Streptococcus
Pneumoniae In The Presence Of The Phosphoryl Analog
Beryllofluoride
pdb|4E7P|B Chain B, Crystal Structure Of Receiver Domain Of Putative Narl
Family Response Regulator Spr1814 From Streptococcus
Pneumoniae In The Presence Of The Phosphoryl Analog
Beryllofluoride
Length = 150
Score = 33.5 bits (75), Expect = 0.34, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVK 57
+D+ I D+ MP GLE+ + I E + V+V+++ R +++ +G Y++K
Sbjct: 67 VDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTFKRAGYFERAVKAGVDAYVLK 123
>pdb|3A0U|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With
Mg(2+)- Bef (Wild Type)
Length = 116
Score = 33.5 bits (75), Expect = 0.35, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
DLVI D+ MP ++GLE+ EI ++ ++++++ + S A+ Y+VK N
Sbjct: 47 DLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAYSHYRSDLSSWAADE--YVVKSFNF 104
Query: 62 DALR 65
D L+
Sbjct: 105 DELK 108
>pdb|3EUL|A Chain A, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|B Chain B, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|C Chain C, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|D Chain D, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
Length = 152
Score = 33.1 bits (74), Expect = 0.45, Method: Composition-based stats.
Identities = 13/56 (23%), Positives = 32/56 (57%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVK 57
D+ + D MP M+G ++ + + V+++S+ D +++ ++L GA +++K
Sbjct: 63 DVALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLK 118
>pdb|3I4E|A Chain A, Crystal Structure Of Isocitrate Lyase From Burkholderia
Pseudomallei
pdb|3I4E|B Chain B, Crystal Structure Of Isocitrate Lyase From Burkholderia
Pseudomallei
pdb|3I4E|C Chain C, Crystal Structure Of Isocitrate Lyase From Burkholderia
Pseudomallei
pdb|3I4E|D Chain D, Crystal Structure Of Isocitrate Lyase From Burkholderia
Pseudomallei
Length = 439
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 366 GLEKMWT-INNNPYLNYAGIRLKNDGDQLVGAG-----EVGLNVKGDAGAGNE 412
G EK+WT INN P++N G N Q V AG G V GDA E
Sbjct: 53 GAEKLWTLINNEPFVNALGALTGNQAMQQVKAGLKAIYLSGWQVAGDANVAGE 105
>pdb|2R25|B Chain B, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3-
Length = 133
Score = 32.3 bits (72), Expect = 0.63, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHL-PVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
+++ D+ MP+++GL K I + + P++ +++ +S I + L SG ++ KP+
Sbjct: 54 NMIFMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIK 113
Query: 61 PDALRNVWQYAVTSKKGK 78
L+ + + +GK
Sbjct: 114 RPKLKTILTEFCAAYQGK 131
>pdb|1YS6|A Chain A, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS6|B Chain B, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS7|A Chain A, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
pdb|1YS7|B Chain B, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
Length = 233
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSS----DDRESVIMKSLASGAVFYMVK 57
D ++ D++MP ++G+ + + +PV V+S+ DDR + L +GA Y+VK
Sbjct: 53 DAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDR----VAGLEAGADDYLVK 108
Query: 58 P 58
P
Sbjct: 109 P 109
>pdb|1OXB|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P2(1)2(1)2(1)
pdb|1OXK|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|D Chain D, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|F Chain F, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|H Chain H, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|J Chain J, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|L Chain L, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
Length = 134
Score = 32.3 bits (72), Expect = 0.73, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHL-PVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
+++ D+ MP+++GL K I + + P++ +++ +S I + L SG ++ KP+
Sbjct: 53 NMIFMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIK 112
Query: 61 PDALRNVWQYAVTSKKGK 78
L+ + + +GK
Sbjct: 113 RPKLKTILTEFCAAYQGK 130
>pdb|3T6K|A Chain A, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
pdb|3T6K|B Chain B, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
Length = 136
Score = 32.3 bits (72), Expect = 0.80, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIH--LPVMVMSSDDRESVIMKSLASGAVFYMVKPV 59
D +I D+ +P ++G L K + + + LP++ +++ S + +GA Y+ KP
Sbjct: 50 DALICDVLLPGIDGYTLCKRVRQHPLTKTLPILXLTAQGDISAKIAGFEAGANDYLAKPF 109
Query: 60 NPDAL 64
P L
Sbjct: 110 EPQEL 114
>pdb|1JFS|A Chain A, Purine Repressor Mutant-Hypoxanthine-Purf Operator Complex
Length = 340
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 59/162 (36%), Gaps = 7/162 (4%)
Query: 212 NHRSSLASGRTSMMLQEVQDYAQAIEKQLQMRTSPFIPRYGRGISELNGNTSFGSIGLQS 271
NH S+ TS + +A+EK + I G + L ++ S+ Q
Sbjct: 56 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLI--LGNAWNNLEKQRAYLSMMAQK 113
Query: 272 HNSLSHVGLLGVQDNFHQPFFGNTTYPLYQANPGTTFGTGLIDMGTNSFSCGGLSGGLMN 331
GLL + + +P + FG D T++ GG M
Sbjct: 114 RVD----GLLVMCSEYPEPLLAMLEEYRHIPMVVMDFGEAKADF-TDAVIDNAFEGGYMA 168
Query: 332 GTNSNQIFHQKSKLRPDPYDNNTGASSLKGFGASGLEKMWTI 373
G + H++ + P P + NTGA L GF + E M +
Sbjct: 169 GRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKV 210
>pdb|3LTE|A Chain A, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|B Chain B, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|C Chain C, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|D Chain D, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|E Chain E, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|F Chain F, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|G Chain G, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|H Chain H, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|I Chain I, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|J Chain J, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|K Chain K, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|L Chain L, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|M Chain M, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|N Chain N, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|O Chain O, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|P Chain P, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|Q Chain Q, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|R Chain R, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|S Chain S, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|T Chain T, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|U Chain U, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|V Chain V, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|W Chain W, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|X Chain X, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
Length = 132
Score = 32.0 bits (71), Expect = 0.96, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 3 LVITDLHMPEMNGLELQKEINEEFI-HLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
++ DL MP+++GL++ + + + + + P +++ S ++ + +++ GA Y+ KP +
Sbjct: 53 IMTLDLSMPKLDGLDVIRSLRQNKVANQPKILVVSGLDKAKLQQAVTEGADDYLEKPFDN 112
Query: 62 DAL 64
DAL
Sbjct: 113 DAL 115
>pdb|1JHZ|A Chain A, Purine Repressor Mutant Corepressor Binding Domain
Structure
pdb|1JHZ|B Chain B, Purine Repressor Mutant Corepressor Binding Domain
Structure
Length = 289
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 59/162 (36%), Gaps = 7/162 (4%)
Query: 212 NHRSSLASGRTSMMLQEVQDYAQAIEKQLQMRTSPFIPRYGRGISELNGNTSFGSIGLQS 271
NH S+ TS + +A+EK + I G + L ++ S+ Q
Sbjct: 5 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLI--LGNAWNNLEKQRAYLSMMAQK 62
Query: 272 HNSLSHVGLLGVQDNFHQPFFGNTTYPLYQANPGTTFGTGLIDMGTNSFSCGGLSGGLMN 331
GLL + + +P + FG D T++ GG M
Sbjct: 63 RVD----GLLVMCSEYPEPLLAMLEEYRHIPMVVMDFGEAKADF-TDAVIDNAFEGGYMA 117
Query: 332 GTNSNQIFHQKSKLRPDPYDNNTGASSLKGFGASGLEKMWTI 373
G + H++ + P P + NTGA L GF + E M +
Sbjct: 118 GRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKV 159
>pdb|2ZAY|A Chain A, Crystal Structure Of Response Regulator From
Desulfuromonas Acetoxidans
pdb|2ZAY|B Chain B, Crystal Structure Of Response Regulator From
Desulfuromonas Acetoxidans
Length = 147
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 3 LVITDLHMPEMNGLELQKEI--NEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
L+IT+ +MP+++G++L + N + +PV+ +S + L G + ++ KPVN
Sbjct: 55 LIITEANMPKISGMDLFNSLKKNPQTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVN 114
>pdb|1P6U|A Chain A, Nmr Structure Of The Bef3-Activated Structure Of The
Response Regulator Chey2-Mg2+ From Sinorhizobium
Meliloti
pdb|1P6Q|A Chain A, Nmr Structure Of The Response Regulator Chey2 From
Sinorhizobium Meliloti, Complexed With Mg++
Length = 129
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 3 LVITDLHMPEMNGLELQKEI--NEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
LVI+D +MP+M+GL L + + N +++++ +++ K+ A GA + KP
Sbjct: 54 LVISDFNMPKMDGLGLLQAVRANPATKKAAFIILTAQGDRALVQKAAALGANNVLAKPFT 113
Query: 61 PDALR 65
+ ++
Sbjct: 114 IEKMK 118
>pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From
Mycobacterium Tuberculosis
Length = 230
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKP 58
D+V+ DL +P M+G ++ K++ +PV+++++ D E + L GA Y+ KP
Sbjct: 50 DIVLLDLMLPGMSGTDVCKQLRARS-SVPVIMVTARDSEIDKVVGLELGADDYVTKP 105
>pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM
THERMOTOGA Maritima
Length = 225
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60
D+VI D+ +P +G E+ K E ++ PV+ +++ +K L GA Y+ KP +
Sbjct: 48 DVVILDIXLPVHDGWEILKSXRESGVNTPVLXLTALSDVEYRVKGLNXGADDYLPKPFD 106
>pdb|3EQZ|A Chain A, Crystal Structure Of A Response Regulator From Colwellia
Psychrerythraea
pdb|3EQZ|B Chain B, Crystal Structure Of A Response Regulator From Colwellia
Psychrerythraea
Length = 135
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDR---ESVIMKSLASG--AVFYMV 56
D++I DL MP+M+G+E+ + + E ++++S D S +L+ G +
Sbjct: 48 DIIILDLMMPDMDGIEVIRHLAEHKSPASLILISGYDSGVLHSAETLALSCGLNVINTFT 107
Query: 57 KPVNPDAL 64
KP+N + L
Sbjct: 108 KPINTEVL 115
>pdb|3CZ5|A Chain A, Crystal Structure Of Two-component Response Regulator,
Luxr Family, From Aurantimonas Sp. Si85-9a1
pdb|3CZ5|B Chain B, Crystal Structure Of Two-component Response Regulator,
Luxr Family, From Aurantimonas Sp. Si85-9a1
pdb|3CZ5|C Chain C, Crystal Structure Of Two-component Response Regulator,
Luxr Family, From Aurantimonas Sp. Si85-9a1
pdb|3CZ5|D Chain D, Crystal Structure Of Two-component Response Regulator,
Luxr Family, From Aurantimonas Sp. Si85-9a1
Length = 153
Score = 30.4 bits (67), Expect = 2.5, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 36/78 (46%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
D+V+ DL +P G+E + I + +++ + + +K+ +GA Y+ K +P
Sbjct: 53 DIVVMDLTLPGPGGIEATRHIRQWDGAARILIFTMHQGSAFALKAFEAGASGYVTKSSDP 112
Query: 62 DALRNVWQYAVTSKKGKS 79
L + + ++ S
Sbjct: 113 AELVQAIEAILAGRRAMS 130
>pdb|1BDH|A Chain A, Purine Repressor Mutant-Hypoxanthine-Palindromic Operator
Complex
pdb|1QP7|A Chain A, Purine Repressor Mutant-Hypoxanthine-Palindromic Operator
Complex
pdb|1QQA|A Chain A, Purine Repressor Mutant-Hypoxanthine-Palindromic Operator
Complex
pdb|1QQB|A Chain A, Purine Repressor Mutant-hypoxanthine-palindromic Operator
Complex
Length = 340
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 58/159 (36%), Gaps = 7/159 (4%)
Query: 212 NHRSSLASGRTSMMLQEVQDYAQAIEKQLQMRTSPFIPRYGRGISELNGNTSFGSIGLQS 271
NH S+ TS + +A+EK + I G + L ++ S+ Q
Sbjct: 56 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLI--LGNAWNNLEKQRAYLSMMAQK 113
Query: 272 HNSLSHVGLLGVQDNFHQPFFGNTTYPLYQANPGTTFGTGLIDMGTNSFSCGGLSGGLMN 331
GLL + + +P + +G D T++ GG M
Sbjct: 114 RVD----GLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADF-TDAVIDNAFEGGYMA 168
Query: 332 GTNSNQIFHQKSKLRPDPYDNNTGASSLKGFGASGLEKM 370
G + H++ + P P + NTGA L GF + E M
Sbjct: 169 GRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAM 207
>pdb|1PNR|A Chain A, Purine Repressor-Hypoxanthine-Purf-Operator Complex
pdb|1BDI|A Chain A, Purine Repressor Mutant-Hypoxanthine-Palindromic Operator
Complex
pdb|1WET|A Chain A, Structure Of The Purr-Guanine-Purf Operator Complex
pdb|1QP0|A Chain A, Purine Repressor-Hypoxanthine-Palindromic Operator Complex
pdb|1QP4|A Chain A, Purine Repressor-Hypoxanthine-Palindromic Operator Complex
pdb|1QPZ|A Chain A, Purine Repressor-Hypoxanthine-Palindromic Operator Complex
pdb|1ZAY|A Chain A, Purine Repressor-hypoxanthine-modified-purf-operator
Complex
Length = 340
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 58/159 (36%), Gaps = 7/159 (4%)
Query: 212 NHRSSLASGRTSMMLQEVQDYAQAIEKQLQMRTSPFIPRYGRGISELNGNTSFGSIGLQS 271
NH S+ TS + +A+EK + I G + L ++ S+ Q
Sbjct: 56 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLI--LGNAWNNLEKQRAYLSMMAQK 113
Query: 272 HNSLSHVGLLGVQDNFHQPFFGNTTYPLYQANPGTTFGTGLIDMGTNSFSCGGLSGGLMN 331
GLL + + +P + +G D T++ GG M
Sbjct: 114 RVD----GLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADF-TDAVIDNAFEGGYMA 168
Query: 332 GTNSNQIFHQKSKLRPDPYDNNTGASSLKGFGASGLEKM 370
G + H++ + P P + NTGA L GF + E M
Sbjct: 169 GRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAM 207
>pdb|1A2O|A Chain A, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
pdb|1A2O|B Chain B, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
Length = 349
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSS--DDRESVIMKSLASGAVFYMVKP 58
D++ D+ MP M+GL+ +++ +PV+++SS V +++L GA+ ++ KP
Sbjct: 51 DVLTLDVEMPRMDGLDFLEKLM-RLRPMPVVMVSSLTGKGSEVTLRALELGAIDFVTKP 108
>pdb|2PUE|A Chain A, Crystal Structure Of The Laci Family Member, Purr, Bound
To Dna: Minor Groove Binding By Alpha Helices
pdb|2PUF|A Chain A, Crystal Structure Of The Laci Family Member, Purr, Bound
To Dna: Minor Groove Binding By Alpha Helices
pdb|2PUG|A Chain A, Crystal Structure Of The Laci Family Member, Purr, Bound
To Dna: Minor Groove Binding By Alpha Helices
Length = 340
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 58/159 (36%), Gaps = 7/159 (4%)
Query: 212 NHRSSLASGRTSMMLQEVQDYAQAIEKQLQMRTSPFIPRYGRGISELNGNTSFGSIGLQS 271
NH S+ TS + +A+EK + I G + L ++ S+ Q
Sbjct: 56 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLI--LGNAWNNLEKQRAYLSMMAQK 113
Query: 272 HNSLSHVGLLGVQDNFHQPFFGNTTYPLYQANPGTTFGTGLIDMGTNSFSCGGLSGGLMN 331
GLL + + +P + +G D T++ GG M
Sbjct: 114 RVD----GLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADF-TDAVIDNAFEGGYMA 168
Query: 332 GTNSNQIFHQKSKLRPDPYDNNTGASSLKGFGASGLEKM 370
G + H++ + P P + NTGA L GF + E M
Sbjct: 169 GRYLIERGHREIGVIPGPLEQNTGAGRLAGFMKAMEEAM 207
>pdb|1VPW|A Chain A, Structure Of The Purr Mutant, L54m, Bound To Hypoxanthine
And Purf Operator Dna
Length = 340
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 58/159 (36%), Gaps = 7/159 (4%)
Query: 212 NHRSSLASGRTSMMLQEVQDYAQAIEKQLQMRTSPFIPRYGRGISELNGNTSFGSIGLQS 271
NH S+ TS + +A+EK + I G + L ++ S+ Q
Sbjct: 56 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLI--LGNAWNNLEKQRAYLSMMAQK 113
Query: 272 HNSLSHVGLLGVQDNFHQPFFGNTTYPLYQANPGTTFGTGLIDMGTNSFSCGGLSGGLMN 331
GLL + + +P + +G D T++ GG M
Sbjct: 114 RVD----GLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADF-TDAVIDNAFEGGYMA 168
Query: 332 GTNSNQIFHQKSKLRPDPYDNNTGASSLKGFGASGLEKM 370
G + H++ + P P + NTGA L GF + E M
Sbjct: 169 GRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAM 207
>pdb|2JFU|A Chain A, Crystal Structure Of Enterococcus Faecium Glutamate
Racemase In Complex With Phosphate
pdb|2JFV|A Chain A, Crystal Structure Of Enterococcus Faecium Glutamate
Racemase In Complex With Citrate
pdb|2JFW|A Chain A, Crystal Structure Of Enterococcus Faecium Glutamate
Racemase In Complex With Tartrate
Length = 291
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%)
Query: 116 KTNSKRKASKRRKDELEGENAAAPKKAKVVWTNSLHNRFLQAIRHITLEKAVPKKI 171
K+ + KA K + EL + A PK VV +N H+ + I TL KKI
Sbjct: 144 KSQAYEKALKEKVPELTVTSLACPKFVSVVESNEYHSSVAKKIVAETLAPLTTKKI 199
>pdb|1DBQ|A Chain A, Dna-Binding Regulatory Protein
pdb|1DBQ|B Chain B, Dna-Binding Regulatory Protein
Length = 289
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 59/162 (36%), Gaps = 7/162 (4%)
Query: 212 NHRSSLASGRTSMMLQEVQDYAQAIEKQLQMRTSPFIPRYGRGISELNGNTSFGSIGLQS 271
NH S+ TS + +A+EK + I G + L ++ S+ Q
Sbjct: 5 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLI--LGNAWNNLEKQRAYLSMMAQK 62
Query: 272 HNSLSHVGLLGVQDNFHQPFFGNTTYPLYQANPGTTFGTGLIDMGTNSFSCGGLSGGLMN 331
GLL + + +P + +G D T++ GG M
Sbjct: 63 RVD----GLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADF-TDAVIDNAFEGGYMA 117
Query: 332 GTNSNQIFHQKSKLRPDPYDNNTGASSLKGFGASGLEKMWTI 373
G + H++ + P P + NTGA L GF + E M +
Sbjct: 118 GRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKV 159
>pdb|3KHT|A Chain A, Crystal Structure Of Response Regulator From Hahella
Chejuensis
Length = 144
Score = 29.6 bits (65), Expect = 4.2, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFI--HLPVMVMS---SDDRESVIMKSLASGAV 52
DL+I D+ +P NG E+ + + H P+++++ SDDR + AS V
Sbjct: 53 DLIILDIGLPIANGFEVXSAVRKPGANQHTPIVILTDNVSDDRAKQCXAAGASSVV 108
>pdb|2QVG|A Chain A, The Crystal Structure Of A Two-Component Response
Regulator From Legionella Pneumophila
Length = 143
Score = 29.6 bits (65), Expect = 4.5, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 43/71 (60%), Gaps = 7/71 (9%)
Query: 3 LVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSS--DDRESVIMKSLASGAVFYMVKP 58
L++ D+++P+ NG+E KE+ ++ F + V V+++ ++ + +SL +++KP
Sbjct: 62 LILLDINIPKXNGIEFLKELRDDSSFTDIEVFVLTAAYTSKDKLAFESLNIRG--HLIKP 119
Query: 59 VN-PDALRNVW 68
++ +A++ W
Sbjct: 120 LDYGEAIKLFW 130
>pdb|2Y4S|A Chain A, Barley Limit Dextrinase In Complex With Beta-Cyclodextrin
pdb|2Y5E|A Chain A, Barley Limit Dextrinase In Complex With Alpha-Cyclodextrin
pdb|4AIO|A Chain A, Crystal Structure Of The Starch Debranching Enzyme Barley
Limit Dextrinase
Length = 884
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 405 GDAGAGNEGATFHHLPLGYSSSP---AGFAVGNEQEH----TSVLPPLSLSQQQYC 453
G+A G+E TF LP+GY++SP + ++ E SV P+ LS + C
Sbjct: 608 GEAKKGSEIHTFDGLPVGYTASPIETINYVSAHDNETLFDVISVKTPMILSVDERC 663
>pdb|2JBA|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFI--HLPVMVMSSDDRESVIMKSLASGAVFYMVKPV 59
DL++ +P +G++ K + E + +PV+++++ E ++ L +GA + KP
Sbjct: 48 DLILLAWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPF 107
Query: 60 NPDAL 64
+P L
Sbjct: 108 SPKEL 112
>pdb|3A0R|B Chain B, Crystal Structure Of Histidine Kinase Thka (Tm1359) In
Complex With Response Regulator Protein Trra (Tm1360)
pdb|3A10|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With
Mg(2+)- Bef (Semet, L89m)
Length = 116
Score = 29.3 bits (64), Expect = 5.5, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
DLVI D+ P ++GLE+ EI ++ ++++++ S A+ Y+VK N
Sbjct: 47 DLVILDIEXPGISGLEVAGEIRKKKKDAKIILLTAYSHYRSDXSSWAADE--YVVKSFNF 104
Query: 62 DALR 65
D L+
Sbjct: 105 DELK 108
>pdb|2JBA|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 29.3 bits (64), Expect = 5.5, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFI--HLPVMVMSSDDRESVIMKSLASGAVFYMVKPV 59
DL++ +P +G++ K + E + +PV+++++ E ++ L +GA + KP
Sbjct: 48 DLILLAWMLPGGSGIQFIKHLRRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPF 107
Query: 60 NPDAL 64
+P L
Sbjct: 108 SPKEL 112
>pdb|3N53|A Chain A, Crystal Structure Of A Response Regulator Receiver
Modulated Diguanylate Cyclase From Pelobacter
Carbinolicus
pdb|3N53|B Chain B, Crystal Structure Of A Response Regulator Receiver
Modulated Diguanylate Cyclase From Pelobacter
Carbinolicus
Length = 140
Score = 29.3 bits (64), Expect = 5.6, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 2 DLVITDLHMPEMNG--LELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPV 59
DLVI D + N L L+ + ++ ++P++++ S + + I+ L SGA Y+ KP
Sbjct: 48 DLVILDXDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPF 107
Query: 60 NPDAL 64
N + L
Sbjct: 108 NRNDL 112
>pdb|1ZY2|A Chain A, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
pdb|1ZY2|B Chain B, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
Length = 150
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKP 58
++V+ L +P++NGLE+ K I E V+V++ ++++ GA ++ KP
Sbjct: 46 NVVLLXLLLPDVNGLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKP 102
>pdb|2QZJ|A Chain A, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|B Chain B, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|C Chain C, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|D Chain D, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|E Chain E, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|F Chain F, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
Length = 136
Score = 29.3 bits (64), Expect = 6.8, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61
DL+ ++ + + +G L K+I P++ + + + I+ +L SG Y++KP+N
Sbjct: 50 DLIFLEIILSDGDGWTLCKKI-RNVTTCPIVYXTYINEDQSILNALNSGGDDYLIKPLNL 108
Query: 62 DAL 64
+ L
Sbjct: 109 EIL 111
>pdb|3C8F|A Chain A, 4fe-4s-Pyruvate Formate-Lyase Activating Enzyme With
Partially Disordered Adomet
pdb|3CB8|A Chain A, 4fe-4s-Pyruvate Formate-Lyase Activating Enzyme In Complex
With Adomet And A Peptide Substrate
Length = 245
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 218 ASGRTSMMLQE-VQDYAQAIEKQ---LQMRTSPFIPRYGRGISELNGNTSFGSIGLQSHN 273
ASG +++ E V+D+ +A +K+ + T+ F+ RY I EL T + L+ N
Sbjct: 75 ASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLEVTDLVMLDLKQMN 134
Query: 274 SLSHVGLLGVQDN 286
H L+GV ++
Sbjct: 135 DEIHQNLVGVSNH 147
>pdb|2ZTB|A Chain A, Crystal Structure Of The Parasporin-2 Bacillus
Thuringiensis Toxin That Recognizes Cancer Cells
pdb|2ZTB|B Chain B, Crystal Structure Of The Parasporin-2 Bacillus
Thuringiensis Toxin That Recognizes Cancer Cells
Length = 252
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 423 YSSSPAGFAVGNEQEHTSVLPPLSLSQQQYC 453
Y ++P G A+ NE +V PP++ YC
Sbjct: 31 YGTNPDGIALNNETYFNAVKPPITAQYGYYC 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.131 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,519,572
Number of Sequences: 62578
Number of extensions: 772759
Number of successful extensions: 1506
Number of sequences better than 100.0: 164
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 99
Number of HSP's that attempted gapping in prelim test: 1372
Number of HSP's gapped (non-prelim): 167
length of query: 566
length of database: 14,973,337
effective HSP length: 104
effective length of query: 462
effective length of database: 8,465,225
effective search space: 3910933950
effective search space used: 3910933950
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)