Query 040406
Match_columns 566
No_of_seqs 362 out of 2877
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 08:06:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040406.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040406hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3437 Response regulator con 99.7 1.9E-17 4.1E-22 172.8 9.7 190 1-204 59-262 (360)
2 COG4566 TtrR Response regulato 99.7 5.5E-17 1.2E-21 156.8 9.4 138 1-138 49-189 (202)
3 COG2197 CitB Response regulato 99.7 3.1E-16 6.7E-21 154.4 12.7 139 1-142 47-199 (211)
4 PLN03162 golden-2 like transcr 99.7 6.9E-17 1.5E-21 167.2 6.8 91 136-226 230-328 (526)
5 PRK11475 DNA-binding transcrip 99.6 5.6E-15 1.2E-19 145.4 13.6 136 1-139 38-182 (207)
6 PRK10840 transcriptional regul 99.6 2.2E-14 4.8E-19 138.7 13.9 137 1-140 50-199 (216)
7 PRK09483 response regulator; P 99.5 4.1E-13 8.9E-18 127.2 13.8 136 1-139 48-196 (217)
8 PRK10100 DNA-binding transcrip 99.5 4.5E-13 9.8E-18 132.6 13.5 137 1-142 53-206 (216)
9 COG0745 OmpR Response regulato 99.4 7.6E-13 1.6E-17 132.3 10.1 76 1-76 44-120 (229)
10 PRK10046 dpiA two-component re 99.4 2.3E-12 4.9E-17 126.2 10.6 127 1-129 51-200 (225)
11 PRK09958 DNA-binding transcrip 99.4 7.6E-12 1.7E-16 117.4 13.2 138 1-138 46-190 (204)
12 PRK09935 transcriptional regul 99.4 6.7E-12 1.5E-16 117.5 12.8 138 1-138 50-196 (210)
13 PRK15411 rcsA colanic acid cap 99.3 5.8E-12 1.2E-16 123.6 11.6 135 1-139 48-185 (207)
14 PRK10430 DNA-binding transcrip 99.3 8.8E-12 1.9E-16 122.9 12.8 130 1-130 50-202 (239)
15 PRK10403 transcriptional regul 99.3 1.2E-11 2.5E-16 115.5 12.0 146 1-146 53-208 (215)
16 COG4565 CitB Response regulato 99.3 4.9E-12 1.1E-16 124.7 9.5 129 1-129 47-196 (224)
17 PRK10360 DNA-binding transcrip 99.3 1.2E-11 2.7E-16 115.3 11.6 134 1-140 48-186 (196)
18 PRK15369 two component system 99.3 1.9E-11 4.2E-16 112.8 12.5 138 1-138 50-196 (211)
19 TIGR01557 myb_SHAQKYF myb-like 99.3 2E-12 4.4E-17 103.3 5.1 54 141-194 1-55 (57)
20 COG2204 AtoC Response regulato 99.3 8.4E-12 1.8E-16 135.9 11.4 77 1-77 49-125 (464)
21 PRK10651 transcriptional regul 99.3 2.5E-11 5.3E-16 113.7 12.5 140 1-140 53-204 (216)
22 COG4753 Response regulator con 99.3 1.4E-11 3E-16 134.2 9.5 74 1-74 49-122 (475)
23 PRK10336 DNA-binding transcrip 99.2 6.4E-11 1.4E-15 111.9 11.7 127 1-127 45-194 (219)
24 PF00072 Response_reg: Respons 99.2 6.2E-11 1.4E-15 101.5 9.5 69 1-69 44-112 (112)
25 PRK11083 DNA-binding response 99.2 1E-10 2.2E-15 111.0 11.3 119 1-119 48-186 (228)
26 PRK09390 fixJ response regulat 99.2 1.4E-10 3E-15 106.7 9.9 136 1-136 48-186 (202)
27 TIGR03787 marine_sort_RR prote 99.1 3.3E-10 7.1E-15 108.4 12.1 128 1-128 45-199 (227)
28 PRK10643 DNA-binding transcrip 99.1 3.5E-10 7.5E-15 106.9 11.8 113 1-113 45-174 (222)
29 TIGR02154 PhoB phosphate regul 99.1 2.7E-10 5.8E-15 107.7 9.8 130 1-130 47-202 (226)
30 PRK10955 DNA-binding transcrip 99.1 5.4E-10 1.2E-14 106.8 11.0 108 1-109 45-174 (232)
31 TIGR01387 cztR_silR_copR heavy 99.1 8.9E-10 1.9E-14 103.8 11.2 115 1-115 43-175 (218)
32 PRK15479 transcriptional regul 99.1 1.6E-09 3.4E-14 102.3 11.9 116 1-116 45-177 (221)
33 CHL00148 orf27 Ycf27; Reviewed 99.0 1.4E-09 3.1E-14 104.4 11.1 115 1-116 51-190 (240)
34 PRK10693 response regulator of 99.0 3.2E-09 7E-14 109.7 11.1 75 1-75 18-93 (303)
35 PRK10161 transcriptional regul 99.0 4.8E-09 1.1E-13 100.6 11.4 113 1-113 47-180 (229)
36 PRK10529 DNA-binding transcrip 99.0 5.6E-09 1.2E-13 99.8 11.5 74 1-75 46-119 (225)
37 COG0784 CheY FOG: CheY-like re 98.9 5.3E-09 1.1E-13 91.7 10.2 73 1-73 52-125 (130)
38 PRK10710 DNA-binding transcrip 98.9 5.6E-09 1.2E-13 100.3 11.2 127 1-128 55-206 (240)
39 PRK10816 DNA-binding transcrip 98.9 5.1E-09 1.1E-13 100.1 10.5 74 1-74 45-118 (223)
40 PLN03029 type-a response regul 98.9 3.2E-09 7E-14 105.1 9.2 75 1-75 73-149 (222)
41 PRK09836 DNA-binding transcrip 98.9 6E-09 1.3E-13 99.9 10.6 74 1-74 45-118 (227)
42 PRK09581 pleD response regulat 98.9 4.5E-09 9.8E-14 110.5 8.1 74 1-74 199-274 (457)
43 PRK11173 two-component respons 98.9 1.1E-08 2.4E-13 99.3 10.1 73 1-74 48-120 (237)
44 PRK11517 transcriptional regul 98.9 1.7E-08 3.7E-13 95.8 11.1 105 1-106 45-162 (223)
45 PRK09468 ompR osmolarity respo 98.8 1.3E-08 2.9E-13 98.5 10.2 74 1-74 50-123 (239)
46 PRK10766 DNA-binding transcrip 98.8 2E-08 4.4E-13 95.6 10.2 73 1-74 47-119 (221)
47 COG3706 PleD Response regulato 98.8 1.7E-08 3.7E-13 109.5 10.6 76 1-76 177-254 (435)
48 COG3707 AmiR Response regulato 98.8 2.3E-08 5.1E-13 97.6 10.4 75 1-76 51-125 (194)
49 KOG0519 Sensory transduction h 98.8 1.1E-08 2.5E-13 118.6 9.3 72 1-72 712-784 (786)
50 TIGR02875 spore_0_A sporulatio 98.8 2.5E-08 5.3E-13 99.4 10.4 74 1-74 49-124 (262)
51 TIGR02915 PEP_resp_reg putativ 98.8 3.2E-08 7E-13 106.4 10.4 74 1-74 41-119 (445)
52 PRK10701 DNA-binding transcrip 98.8 4.9E-08 1.1E-12 94.8 10.7 73 1-74 46-118 (240)
53 PRK14084 two-component respons 98.7 4.2E-08 9.1E-13 96.3 10.1 72 1-74 47-118 (246)
54 PRK11107 hybrid sensory histid 98.7 9.7E-08 2.1E-12 110.4 14.4 74 1-74 712-787 (919)
55 PRK11091 aerobic respiration c 98.7 1.6E-07 3.4E-12 107.8 15.9 73 1-74 570-645 (779)
56 PRK15347 two component system 98.7 1.5E-07 3.3E-12 109.0 15.4 73 1-73 735-811 (921)
57 PRK13856 two-component respons 98.7 6.5E-08 1.4E-12 94.5 10.4 73 1-74 46-119 (241)
58 PRK11466 hybrid sensory histid 98.7 4.5E-08 9.7E-13 113.7 10.1 75 1-75 727-801 (914)
59 PRK10841 hybrid sensory kinase 98.7 5.7E-08 1.2E-12 114.6 11.1 75 1-75 846-920 (924)
60 COG3947 Response regulator con 98.7 2.8E-08 6.1E-13 102.3 6.5 71 1-73 45-115 (361)
61 PRK15115 response regulator Gl 98.6 7.9E-08 1.7E-12 103.4 9.2 74 1-74 50-123 (444)
62 PRK11361 acetoacetate metaboli 98.6 9.7E-08 2.1E-12 102.8 9.7 74 1-74 49-122 (457)
63 PRK10923 glnG nitrogen regulat 98.6 1.2E-07 2.6E-12 102.8 10.5 74 1-74 48-121 (469)
64 PRK10365 transcriptional regul 98.6 7.2E-08 1.5E-12 103.2 8.6 74 1-74 50-123 (441)
65 TIGR01818 ntrC nitrogen regula 98.6 1.2E-07 2.6E-12 102.4 10.3 74 1-74 43-116 (463)
66 PRK09959 hybrid sensory histid 98.6 1.6E-07 3.6E-12 112.3 10.7 74 1-74 1003-1076(1197)
67 TIGR02956 TMAO_torS TMAO reduc 98.6 1.8E-07 3.8E-12 109.2 10.2 73 1-73 747-822 (968)
68 COG4567 Response regulator con 98.6 1E-07 2.2E-12 90.2 6.5 70 1-70 54-123 (182)
69 PRK11697 putative two-componen 98.6 2.8E-07 6.2E-12 89.7 9.5 71 1-74 48-118 (238)
70 PRK10610 chemotaxis regulatory 98.5 8.7E-07 1.9E-11 74.1 10.5 73 1-73 51-125 (129)
71 PRK09581 pleD response regulat 98.5 5.9E-07 1.3E-11 94.5 10.5 74 1-74 47-122 (457)
72 PRK12555 chemotaxis-specific m 98.4 9.2E-07 2E-11 92.4 9.8 71 1-72 47-128 (337)
73 cd00156 REC Signal receiver do 98.4 1.1E-06 2.5E-11 69.5 7.9 71 1-71 42-112 (113)
74 PRK13558 bacterio-opsin activa 98.4 1.3E-06 2.9E-11 98.4 10.9 73 1-73 52-126 (665)
75 PRK13435 response regulator; P 98.3 2.2E-06 4.9E-11 77.2 9.0 72 1-76 51-123 (145)
76 PRK00742 chemotaxis-specific m 98.3 2.5E-06 5.4E-11 89.7 10.0 59 1-60 50-110 (354)
77 PRK09191 two-component respons 98.2 7.5E-06 1.6E-10 80.8 9.7 71 1-74 183-254 (261)
78 PRK13557 histidine kinase; Pro 98.0 1.6E-05 3.4E-10 85.6 9.0 73 1-73 461-534 (540)
79 PRK13837 two-component VirA-li 98.0 2.2E-05 4.7E-10 91.6 9.5 71 1-74 744-814 (828)
80 COG2201 CheB Chemotaxis respon 97.9 1.5E-05 3.3E-10 84.7 6.8 59 1-60 48-108 (350)
81 COG3279 LytT Response regulato 97.8 3.5E-05 7.6E-10 78.0 6.4 71 1-73 48-118 (244)
82 COG3706 PleD Response regulato 97.1 0.00046 9.9E-09 75.6 4.6 71 1-73 33-103 (435)
83 PRK15029 arginine decarboxylas 96.8 0.0033 7E-08 73.4 8.2 70 1-71 54-130 (755)
84 COG2206 c-di-GMP phosphodieste 95.7 0.0085 1.8E-07 63.8 3.6 56 135-203 168-224 (344)
85 PRK15201 fimbriae regulatory p 94.7 0.05 1.1E-06 53.4 5.3 91 52-142 92-184 (198)
86 PRK15320 transcriptional activ 94.7 0.043 9.3E-07 54.8 4.8 120 15-138 60-211 (251)
87 PRK11107 hybrid sensory histid 94.6 0.12 2.5E-06 60.5 9.0 72 1-72 577-650 (919)
88 TIGR03815 CpaE_hom_Actino heli 89.4 0.63 1.4E-05 48.7 5.7 44 29-72 42-86 (322)
89 PRK13719 conjugal transfer tra 88.6 0.48 1E-05 47.9 3.9 54 88-141 140-193 (217)
90 PRK10188 DNA-binding transcrip 86.7 0.63 1.4E-05 47.2 3.5 53 90-142 178-230 (240)
91 PRK13870 transcriptional regul 84.6 0.6 1.3E-05 47.2 2.3 53 90-142 172-224 (234)
92 PF00196 GerE: Bacterial regul 83.8 0.71 1.5E-05 36.3 1.9 49 90-138 2-50 (58)
93 PF00249 Myb_DNA-binding: Myb- 83.5 2.3 5.1E-05 32.2 4.6 47 144-193 2-48 (48)
94 PRK00043 thiE thiamine-phospha 80.9 12 0.00027 36.1 9.8 55 1-56 125-187 (212)
95 PRK13111 trpA tryptophan synth 80.5 5.6 0.00012 41.1 7.5 58 14-71 75-138 (258)
96 cd02071 MM_CoA_mut_B12_BD meth 79.4 10 0.00023 34.2 8.1 69 1-69 51-121 (122)
97 TIGR00262 trpA tryptophan synt 78.6 7.7 0.00017 39.9 7.8 58 14-71 73-136 (256)
98 COG2909 MalT ATP-dependent tra 78.4 1.5 3.2E-05 52.1 2.7 53 91-143 831-883 (894)
99 cd04724 Tryptophan_synthase_al 77.0 10 0.00022 38.6 8.0 58 14-72 63-126 (242)
100 PRK04841 transcriptional regul 75.7 1.7 3.7E-05 51.0 2.4 53 90-142 837-889 (903)
101 COG2771 CsgD DNA-binding HTH d 75.2 2.3 5E-05 33.2 2.3 49 91-139 4-52 (65)
102 PF06490 FleQ: Flagellar regul 73.7 9.4 0.0002 34.2 6.1 53 14-71 55-107 (109)
103 TIGR02311 HpaI 2,4-dihydroxyhe 73.5 18 0.00038 37.1 8.8 71 1-71 34-106 (249)
104 TIGR03239 GarL 2-dehydro-3-deo 72.6 20 0.00044 36.8 9.0 71 1-71 34-106 (249)
105 PLN02591 tryptophan synthase 72.0 13 0.00028 38.4 7.4 58 14-72 65-128 (250)
106 PF03709 OKR_DC_1_N: Orn/Lys/A 71.9 5.2 0.00011 36.0 4.0 71 2-73 40-113 (115)
107 PRK10128 2-keto-3-deoxy-L-rham 71.7 22 0.00047 37.1 9.0 71 1-71 40-112 (267)
108 PRK10558 alpha-dehydro-beta-de 71.5 22 0.00047 36.7 9.0 71 1-71 41-113 (256)
109 PRK05458 guanosine 5'-monophos 71.0 10 0.00022 40.6 6.7 54 1-55 112-166 (326)
110 TIGR03020 EpsA transcriptional 70.0 3 6.6E-05 42.8 2.3 54 89-142 188-241 (247)
111 CHL00200 trpA tryptophan synth 68.8 15 0.00032 38.2 7.1 57 14-71 78-140 (263)
112 TIGR03541 reg_near_HchA LuxR f 68.2 3.9 8.5E-05 41.1 2.6 53 89-141 169-221 (232)
113 PRK02261 methylaspartate mutas 67.8 33 0.00071 32.1 8.5 72 1-73 55-135 (137)
114 PRK07764 DNA polymerase III su 63.9 1.3E+02 0.0029 36.3 14.5 72 2-75 122-195 (824)
115 PRK06843 inosine 5-monophospha 63.5 24 0.00052 39.0 7.7 54 1-55 166-220 (404)
116 PRK12704 phosphodiesterase; Pr 63.2 9.8 0.00021 43.2 4.9 58 16-73 233-296 (520)
117 COG0159 TrpA Tryptophan syntha 61.5 31 0.00068 36.1 7.8 55 14-68 80-140 (265)
118 PF00290 Trp_syntA: Tryptophan 60.4 20 0.00043 37.3 6.1 54 15-68 74-133 (259)
119 TIGR00640 acid_CoA_mut_C methy 60.3 62 0.0013 30.1 8.8 72 1-72 54-127 (132)
120 PF01408 GFO_IDH_MocA: Oxidore 56.4 25 0.00053 30.6 5.3 46 28-73 62-111 (120)
121 TIGR01302 IMP_dehydrog inosine 55.8 36 0.00077 37.9 7.5 54 1-55 237-291 (450)
122 TIGR01305 GMP_reduct_1 guanosi 55.7 38 0.00083 36.7 7.4 56 1-57 122-178 (343)
123 TIGR02397 dnaX_nterm DNA polym 54.9 1.9E+02 0.0041 30.2 12.4 44 29-74 148-191 (355)
124 PF03328 HpcH_HpaI: HpcH/HpaI 54.0 63 0.0014 32.0 8.3 71 1-71 22-106 (221)
125 PRK01130 N-acetylmannosamine-6 53.8 73 0.0016 31.5 8.7 43 14-57 160-202 (221)
126 cd00331 IGPS Indole-3-glycerol 53.8 70 0.0015 31.5 8.5 66 5-71 50-117 (217)
127 PRK14949 DNA polymerase III su 52.2 3.2E+02 0.007 33.7 14.9 71 2-74 121-193 (944)
128 cd04728 ThiG Thiazole synthase 52.2 27 0.00059 36.2 5.4 57 16-73 164-225 (248)
129 PRK05718 keto-hydroxyglutarate 51.6 69 0.0015 32.3 8.2 61 5-66 43-103 (212)
130 PF01729 QRPTase_C: Quinolinat 51.6 56 0.0012 31.7 7.3 57 15-72 66-122 (169)
131 PF01081 Aldolase: KDPG and KH 51.3 67 0.0014 32.1 7.9 63 5-68 36-98 (196)
132 cd02067 B12-binding B12 bindin 51.1 45 0.00098 29.5 6.1 56 1-57 51-109 (119)
133 cd02068 radical_SAM_B12_BD B12 51.0 47 0.001 29.8 6.3 70 1-71 40-110 (127)
134 TIGR00693 thiE thiamine-phosph 49.4 59 0.0013 31.2 7.1 55 1-56 117-179 (196)
135 PRK00208 thiG thiazole synthas 48.9 33 0.00071 35.7 5.4 57 16-73 164-225 (250)
136 KOG4175 Tryptophan synthase al 48.7 51 0.0011 33.6 6.5 50 18-67 85-140 (268)
137 TIGR00736 nifR3_rel_arch TIM-b 46.7 69 0.0015 32.8 7.4 55 2-56 163-219 (231)
138 cd00381 IMPDH IMPDH: The catal 46.5 65 0.0014 34.3 7.5 55 1-56 107-162 (325)
139 PRK14960 DNA polymerase III su 46.3 4.7E+02 0.01 31.3 14.7 71 2-74 120-192 (702)
140 PLN02274 inosine-5'-monophosph 46.1 62 0.0013 36.8 7.6 55 1-56 261-316 (505)
141 TIGR01501 MthylAspMutase methy 45.8 1.3E+02 0.0029 28.3 8.5 72 1-72 53-132 (134)
142 TIGR01303 IMP_DH_rel_1 IMP deh 45.6 56 0.0012 36.8 7.1 54 1-55 238-292 (475)
143 PRK05096 guanosine 5'-monophos 45.4 67 0.0014 34.9 7.3 53 1-54 123-176 (346)
144 PRK06015 keto-hydroxyglutarate 45.3 1.1E+02 0.0025 30.6 8.5 61 5-66 32-92 (201)
145 TIGR00343 pyridoxal 5'-phospha 45.0 39 0.00084 35.8 5.3 61 14-75 184-251 (287)
146 PRK05567 inosine 5'-monophosph 44.7 66 0.0014 36.1 7.5 54 1-55 241-295 (486)
147 PRK04180 pyridoxal biosynthesi 43.1 52 0.0011 35.0 5.9 62 14-76 190-258 (293)
148 TIGR01037 pyrD_sub1_fam dihydr 43.0 60 0.0013 33.7 6.4 58 16-74 223-286 (300)
149 TIGR01182 eda Entner-Doudoroff 41.9 1.4E+02 0.003 30.1 8.5 59 5-64 36-94 (204)
150 TIGR00721 tfx DNA-binding prot 41.8 13 0.00028 35.1 1.2 44 91-134 6-49 (137)
151 PRK13587 1-(5-phosphoribosyl)- 41.4 83 0.0018 31.9 7.0 55 2-57 164-221 (234)
152 PTZ00314 inosine-5'-monophosph 41.3 76 0.0017 35.9 7.3 54 1-55 254-308 (495)
153 cd04723 HisA_HisF Phosphoribos 41.1 88 0.0019 31.6 7.1 54 2-56 161-217 (233)
154 PRK05848 nicotinate-nucleotide 40.4 1.1E+02 0.0023 32.2 7.7 53 16-70 169-222 (273)
155 cd04729 NanE N-acetylmannosami 40.1 92 0.002 30.8 7.0 43 14-57 164-206 (219)
156 cd00564 TMP_TenI Thiamine mono 39.6 1E+02 0.0023 28.8 7.0 55 1-57 116-178 (196)
157 PRK13125 trpA tryptophan synth 38.9 1.1E+02 0.0023 31.1 7.4 54 17-71 64-125 (244)
158 PRK06552 keto-hydroxyglutarate 38.2 1.3E+02 0.0029 30.2 7.8 62 5-66 41-104 (213)
159 PRK14961 DNA polymerase III su 38.1 5.3E+02 0.012 27.7 12.9 71 2-74 121-193 (363)
160 PRK07003 DNA polymerase III su 37.8 6.1E+02 0.013 31.0 14.0 71 2-74 121-193 (830)
161 TIGR01306 GMP_reduct_2 guanosi 37.8 96 0.0021 33.4 7.1 56 1-57 109-165 (321)
162 TIGR01163 rpe ribulose-phospha 37.5 1E+02 0.0022 29.7 6.7 55 14-69 43-98 (210)
163 PRK02083 imidazole glycerol ph 37.4 1.7E+02 0.0038 29.5 8.6 52 16-68 186-244 (253)
164 cd04727 pdxS PdxS is a subunit 37.1 88 0.0019 33.2 6.5 60 13-73 180-246 (283)
165 PF00478 IMPDH: IMP dehydrogen 37.1 93 0.002 33.9 6.9 56 1-57 121-177 (352)
166 cd03823 GT1_ExpE7_like This fa 36.9 1.2E+02 0.0025 30.1 7.2 65 2-73 264-328 (359)
167 PRK03975 tfx putative transcri 36.8 16 0.00034 34.8 0.9 91 91-192 6-108 (141)
168 cd04726 KGPDC_HPS 3-Keto-L-gul 36.8 1.3E+02 0.0029 28.8 7.4 58 13-70 38-98 (202)
169 PRK14959 DNA polymerase III su 36.7 4.1E+02 0.0088 31.3 12.3 71 2-74 121-193 (624)
170 cd04732 HisA HisA. Phosphorib 36.4 1.2E+02 0.0026 29.9 7.1 53 3-56 163-218 (234)
171 CHL00162 thiG thiamin biosynth 36.3 1.4E+02 0.0031 31.4 7.7 57 17-74 179-240 (267)
172 smart00421 HTH_LUXR helix_turn 35.6 32 0.00069 25.4 2.3 43 91-133 3-45 (58)
173 PRK04128 1-(5-phosphoribosyl)- 35.5 1.9E+02 0.0041 29.2 8.5 65 3-68 46-115 (228)
174 PRK09016 quinolinate phosphori 35.3 1.4E+02 0.003 31.8 7.7 53 16-70 196-248 (296)
175 TIGR00007 phosphoribosylformim 35.1 1.2E+02 0.0027 29.9 7.1 53 3-56 162-217 (230)
176 PRK09140 2-dehydro-3-deoxy-6-p 34.7 2.3E+02 0.005 28.3 8.8 61 5-67 38-99 (206)
177 TIGR00735 hisF imidazoleglycer 34.7 2.6E+02 0.0057 28.4 9.4 52 16-68 188-246 (254)
178 COG4999 Uncharacterized domain 34.3 59 0.0013 30.6 4.2 68 1-68 52-121 (140)
179 cd04740 DHOD_1B_like Dihydroor 34.3 1E+02 0.0022 31.9 6.5 56 16-72 220-281 (296)
180 PRK07896 nicotinate-nucleotide 33.9 1.6E+02 0.0035 31.3 7.9 54 16-71 187-240 (289)
181 cd04730 NPD_like 2-Nitropropan 33.9 1.8E+02 0.0038 28.7 7.9 43 14-57 143-185 (236)
182 cd01572 QPRTase Quinolinate ph 33.2 1.4E+02 0.0031 31.0 7.3 53 17-70 170-222 (268)
183 PRK13585 1-(5-phosphoribosyl)- 33.2 1.3E+02 0.0028 30.0 6.9 53 3-56 166-221 (241)
184 PLN02617 imidazole glycerol ph 33.1 1.7E+02 0.0036 33.7 8.4 68 2-70 454-531 (538)
185 cd03820 GT1_amsD_like This fam 33.0 1.1E+02 0.0024 29.8 6.2 65 2-73 254-318 (348)
186 PRK00748 1-(5-phosphoribosyl)- 32.8 1.4E+02 0.0029 29.6 6.9 53 3-56 163-219 (233)
187 TIGR01334 modD putative molybd 32.4 1.7E+02 0.0037 30.8 7.8 53 17-71 177-229 (277)
188 PF02887 PK_C: Pyruvate kinase 32.1 76 0.0017 28.3 4.5 54 17-71 28-83 (117)
189 PRK14953 DNA polymerase III su 32.1 7.3E+02 0.016 28.1 13.2 70 3-74 122-193 (486)
190 PRK14951 DNA polymerase III su 32.0 9E+02 0.02 28.5 14.3 71 2-74 126-198 (618)
191 cd00452 KDPG_aldolase KDPG and 32.0 1.4E+02 0.003 28.9 6.7 54 1-57 118-171 (190)
192 TIGR00734 hisAF_rel hisA/hisF 31.7 1.6E+02 0.0034 29.7 7.2 54 3-57 157-213 (221)
193 PRK14956 DNA polymerase III su 31.7 3.8E+02 0.0082 30.6 10.8 71 3-74 124-195 (484)
194 PF00534 Glycos_transf_1: Glyc 31.5 2.1E+02 0.0046 25.9 7.6 66 2-75 94-159 (172)
195 PRK07695 transcriptional regul 31.5 2.8E+02 0.006 27.0 8.7 38 15-54 137-174 (201)
196 cd00331 IGPS Indole-3-glycerol 31.2 1.1E+02 0.0024 30.0 6.0 43 15-57 158-201 (217)
197 PF05690 ThiG: Thiazole biosyn 31.2 71 0.0015 33.1 4.6 57 16-73 164-225 (247)
198 PRK06559 nicotinate-nucleotide 31.1 1.8E+02 0.0039 31.0 7.7 53 16-70 184-237 (290)
199 TIGR03151 enACPred_II putative 31.0 1.6E+02 0.0035 31.1 7.4 56 1-57 130-190 (307)
200 PRK07259 dihydroorotate dehydr 30.9 1E+02 0.0022 32.0 5.8 58 15-73 222-285 (301)
201 TIGR03471 HpnJ hopanoid biosyn 30.8 1.5E+02 0.0032 33.0 7.4 65 1-66 69-135 (472)
202 PF06073 DUF934: Bacterial pro 30.2 2.6E+02 0.0057 25.6 7.6 67 4-70 21-91 (110)
203 cd01568 QPRTase_NadC Quinolina 29.8 1.9E+02 0.0041 30.0 7.6 54 17-71 169-222 (269)
204 COG0157 NadC Nicotinate-nucleo 29.7 2.2E+02 0.0047 30.3 7.9 56 15-71 174-229 (280)
205 PRK05286 dihydroorotate dehydr 29.0 71 0.0015 34.2 4.4 57 16-72 276-340 (344)
206 TIGR00078 nadC nicotinate-nucl 28.9 2.4E+02 0.0051 29.4 8.1 53 17-70 166-218 (265)
207 PRK14962 DNA polymerase III su 28.8 8.7E+02 0.019 27.4 13.1 35 40-74 157-191 (472)
208 PRK04128 1-(5-phosphoribosyl)- 28.8 1.4E+02 0.0031 30.2 6.3 52 2-56 158-210 (228)
209 cd01844 SGNH_hydrolase_like_6 28.5 95 0.0021 29.1 4.7 38 1-38 58-103 (177)
210 PRK08385 nicotinate-nucleotide 28.4 1.7E+02 0.0036 30.9 6.9 54 17-72 171-224 (278)
211 smart00426 TEA TEA domain. 28.4 30 0.00066 29.2 1.2 18 145-162 5-22 (68)
212 PRK00411 cdc6 cell division co 28.3 5.4E+02 0.012 27.3 11.0 45 29-73 174-221 (394)
213 PRK06543 nicotinate-nucleotide 28.3 2.1E+02 0.0044 30.4 7.5 54 16-71 180-234 (281)
214 PRK06978 nicotinate-nucleotide 28.1 1.6E+02 0.0036 31.3 6.8 53 17-71 194-246 (294)
215 PF00977 His_biosynth: Histidi 27.9 1.5E+02 0.0033 29.7 6.4 54 2-56 163-219 (229)
216 PRK06096 molybdenum transport 27.8 2.2E+02 0.0048 30.1 7.7 53 17-71 178-230 (284)
217 PRK07428 nicotinate-nucleotide 27.4 2.6E+02 0.0056 29.6 8.1 55 16-71 183-237 (288)
218 PRK09426 methylmalonyl-CoA mut 27.3 2.7E+02 0.0058 33.2 9.0 72 2-74 635-709 (714)
219 PRK07133 DNA polymerase III su 27.2 8.3E+02 0.018 29.4 12.9 70 3-74 121-192 (725)
220 PRK14958 DNA polymerase III su 27.2 9.2E+02 0.02 27.5 13.0 71 2-74 121-193 (509)
221 PRK14954 DNA polymerase III su 27.0 8.6E+02 0.019 28.6 12.9 42 31-74 160-201 (620)
222 PF11338 DUF3140: Protein of u 26.9 1E+02 0.0022 27.6 4.2 35 167-202 39-75 (92)
223 PRK08072 nicotinate-nucleotide 26.8 2.5E+02 0.0053 29.6 7.8 54 16-70 175-228 (277)
224 PRK14955 DNA polymerase III su 26.5 3.7E+02 0.0079 29.3 9.4 43 29-73 158-200 (397)
225 PF04131 NanE: Putative N-acet 26.4 1.3E+02 0.0029 30.2 5.4 43 13-57 131-173 (192)
226 KOG1601 GATA-4/5/6 transcripti 26.4 7.5 0.00016 38.0 -3.3 71 1-71 64-136 (340)
227 PRK06106 nicotinate-nucleotide 26.0 2.7E+02 0.0058 29.5 7.9 54 16-71 181-235 (281)
228 cd01573 modD_like ModD; Quinol 25.8 2E+02 0.0043 30.1 6.9 54 16-71 171-224 (272)
229 PRK01130 N-acetylmannosamine-6 25.5 4.2E+02 0.009 26.1 8.9 50 2-54 90-143 (221)
230 PRK05742 nicotinate-nucleotide 25.4 2.8E+02 0.006 29.2 7.9 52 17-70 178-229 (277)
231 PF05729 NACHT: NACHT domain 25.3 4.5E+02 0.0099 23.4 8.5 56 17-73 107-164 (166)
232 PRK04302 triosephosphate isome 25.3 1.8E+02 0.0039 29.0 6.3 54 17-70 162-217 (223)
233 PRK07807 inosine 5-monophospha 24.9 1.7E+02 0.0037 33.1 6.6 54 1-55 240-294 (479)
234 PRK14965 DNA polymerase III su 24.9 1.1E+03 0.024 27.2 13.7 71 2-74 121-193 (576)
235 TIGR01579 MiaB-like-C MiaB-lik 24.5 2.6E+02 0.0057 30.4 7.9 70 1-71 34-107 (414)
236 TIGR00678 holB DNA polymerase 24.3 1.5E+02 0.0032 28.2 5.3 30 41-70 137-166 (188)
237 PLN02826 dihydroorotate dehydr 23.9 1.3E+02 0.0029 33.3 5.4 41 15-55 327-368 (409)
238 PRK08691 DNA polymerase III su 23.7 9.2E+02 0.02 29.0 12.4 71 2-74 121-193 (709)
239 TIGR00735 hisF imidazoleglycer 23.7 2.7E+02 0.0058 28.4 7.3 54 3-57 47-103 (254)
240 TIGR01334 modD putative molybd 23.5 1.6E+02 0.0035 31.0 5.7 52 1-54 209-260 (277)
241 cd04949 GT1_gtfA_like This fam 23.1 1.4E+02 0.0029 30.9 5.1 56 12-73 289-344 (372)
242 PRK01033 imidazole glycerol ph 23.1 2.5E+02 0.0055 28.7 7.0 53 3-56 169-225 (258)
243 PRK14952 DNA polymerase III su 22.7 1.3E+03 0.027 27.0 13.8 71 2-74 120-192 (584)
244 cd04741 DHOD_1A_like Dihydroor 22.2 1.6E+02 0.0035 30.8 5.5 40 16-55 230-270 (294)
245 TIGR02026 BchE magnesium-proto 22.1 2.5E+02 0.0055 31.5 7.3 70 1-71 64-135 (497)
246 cd02810 DHOD_DHPD_FMN Dihydroo 22.0 1.5E+02 0.0032 30.4 5.1 39 16-54 230-269 (289)
247 PF13487 HD_5: HD domain; PDB: 22.0 1E+02 0.0022 24.8 3.1 23 180-203 3-25 (64)
248 COG2022 ThiG Uncharacterized e 22.0 1.5E+02 0.0031 31.0 4.8 41 16-57 171-211 (262)
249 cd04729 NanE N-acetylmannosami 21.9 3.6E+02 0.0078 26.6 7.6 50 2-54 94-147 (219)
250 PRK14957 DNA polymerase III su 21.5 1.3E+03 0.028 26.7 12.9 71 2-74 121-193 (546)
251 PF02310 B12-binding: B12 bind 21.5 2.8E+02 0.0061 24.0 6.1 37 1-37 52-90 (121)
252 PRK09087 hypothetical protein; 21.5 4.3E+02 0.0094 26.5 8.2 72 3-74 90-168 (226)
253 PF01993 MTD: methylene-5,6,7, 21.5 2.2E+02 0.0047 29.9 6.0 58 1-60 60-117 (276)
254 COG3836 HpcH 2,4-dihydroxyhept 21.4 3.9E+02 0.0085 28.0 7.8 68 1-69 39-109 (255)
255 PRK02290 3-dehydroquinate synt 21.4 2.4E+02 0.0053 30.7 6.6 67 2-71 90-158 (344)
256 cd06170 LuxR_C_like C-terminal 21.3 64 0.0014 23.9 1.7 37 93-129 2-38 (57)
257 PRK06305 DNA polymerase III su 21.2 1E+03 0.022 26.6 11.7 45 28-74 151-195 (451)
258 cd04731 HisF The cyclase subun 21.2 3E+02 0.0066 27.5 7.0 54 3-57 44-100 (243)
259 PRK02083 imidazole glycerol ph 21.1 4.9E+02 0.011 26.3 8.6 54 3-57 47-103 (253)
260 PRK14950 DNA polymerase III su 21.0 1.3E+03 0.028 26.6 12.9 45 28-74 150-194 (585)
261 PRK04169 geranylgeranylglycery 20.9 4.6E+02 0.01 26.9 8.3 54 16-69 172-225 (232)
262 cd00429 RPE Ribulose-5-phospha 20.7 2.1E+02 0.0046 27.4 5.6 55 1-56 128-193 (211)
263 cd04962 GT1_like_5 This family 20.7 2.1E+02 0.0046 29.1 6.0 54 13-73 282-335 (371)
264 PF01180 DHO_dh: Dihydroorotat 20.7 1.3E+02 0.0028 31.3 4.3 41 16-56 231-272 (295)
265 COG1474 CDC6 Cdc6-related prot 20.2 7.8E+02 0.017 26.8 10.3 26 49-74 180-205 (366)
No 1
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.71 E-value=1.9e-17 Score=172.79 Aligned_cols=190 Identities=21% Similarity=0.287 Sum_probs=129.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCC---CCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhcC
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFI---HLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKKG 77 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p---~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~~ 77 (566)
+|+||+|++||+|||++++.+|+...| .+|||++|+..+.+...+++..||++||.||+++.+|...+...+..+..
T Consensus 59 ~dlvllD~~mp~mdg~ev~~~lk~~~p~t~~ip~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~q~k~~ 138 (360)
T COG3437 59 PDLVLLDVRMPEMDGAEVLNKLKAMSPSTRRIPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHLQLKRN 138 (360)
T ss_pred CceEEeeccCCCccHHHHHHHHHhcCCcccccceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999998443 69999999999999999999999999999999999999999766654422
Q ss_pred CCcchhhhhhhc-cCCchHHHHHHhhhccC--CchhHHHH---hhhcccccccccccc----ccccccccchhhhhhhhc
Q 040406 78 KSIFTEEKSSLA-NGSSAEKISFLHDIVSG--SSMIEEKE---SKTNSKRKASKRRKD----ELEGENAAAPKKAKVVWT 147 (566)
Q Consensus 78 ~~~l~~e~~~l~-~~lS~re~evL~~IaqG--sS~~EIae---~k~IS~~k~~~~~k~----~lekl~~~s~KKarL~WT 147 (566)
..........+. ..+..+..+ +..+... ....+++. .+...+.....+... ..+...++......+.|.
T Consensus 139 ~~~~~~~~~~le~~e~~~~~~e-~~~~~~~~~~t~~~L~~~~E~R~~etg~H~~Rv~~~~~~lAe~lgLse~~v~~i~~A 217 (360)
T COG3437 139 EDFLLDQNLYLELQELRRRTEE-LAQIEDNLDETLEELAALLEVRDYETGDHLERVAQYSELLAELLGLSEEEVDLIKKA 217 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHhCCCHHHHHHHHhc
Confidence 211111111110 001111111 1111000 11112221 111111111111111 112234566667789999
Q ss_pred hhhhhHHHHHHHHhcccchhHHHHHHhcCCCC-CCHHHHHHHHHHHHHHHHHhhhhch
Q 040406 148 NSLHNRFLQAIRHITLEKAVPKKILEFMNVPG-LTRENVASHLQKYRIFLKRVADDGI 204 (566)
Q Consensus 148 sELHeKFLaAIgKLGlEKAIPKrILElMnvpG-LTrEEVaSHLQKyrl~lkrl~~~~~ 204 (566)
.+|| +|+|++ +|+.|| .||| ||.+| +..||+|..++.++++.+.
T Consensus 218 apLH-----DIGKva----iPD~IL---lKpg~Lt~ee-~~imk~H~~~G~~il~~s~ 262 (360)
T COG3437 218 APLH-----DIGKVA----IPDSIL---LKPGKLTSEE-FEIMKGHPILGAEILKSSE 262 (360)
T ss_pred cchh-----hccccc----CChHHh---cCCCCCCHHH-HHHHhcchHHHHHHHHHHH
Confidence 9999 999999 999999 9999 99999 9999999999999998874
No 2
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.69 E-value=5.5e-17 Score=156.76 Aligned_cols=138 Identities=21% Similarity=0.283 Sum_probs=119.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhcCCCc
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKKGKSI 80 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~~~~~ 80 (566)
|-++|+|++||+++|.++.++|+.....+|||++|++.|.....+|++.||.|||.||++...|.++|+++++.......
T Consensus 49 pGclllDvrMPg~sGlelq~~L~~~~~~~PVIfiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~~~~~~ 128 (202)
T COG4566 49 PGCLLLDVRMPGMSGLELQDRLAERGIRLPVIFLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARDASRRA 128 (202)
T ss_pred CCeEEEecCCCCCchHHHHHHHHhcCCCCCEEEEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999876432211
Q ss_pred ---chhhhhhhccCCchHHHHHHhhhccCCchhHHHHhhhccccccccccccccccccccc
Q 040406 81 ---FTEEKSSLANGSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENAAA 138 (566)
Q Consensus 81 ---l~~e~~~l~~~lS~re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~~lekl~~~s 138 (566)
...........+++||++++..+..|..+++|+....+|.+|++.|+...-+|....+
T Consensus 129 ~~~~~~~~~~~l~tLT~RERqVl~~vV~G~~NKqIA~dLgiS~rTVe~HRanvM~Km~a~S 189 (202)
T COG4566 129 EADRQAAIRARLATLTPRERQVLDLVVRGLMNKQIAFDLGISERTVELHRANVMEKMQARS 189 (202)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHcCcccHHHHHHcCCchhhHHHHHHHHHHHHhhcc
Confidence 2233345567899999999999999999999999999999999999877666554433
No 3
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.68 E-value=3.1e-16 Score=154.41 Aligned_cols=139 Identities=21% Similarity=0.300 Sum_probs=121.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhcCCCc
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKKGKSI 80 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~~~~~ 80 (566)
||+||+|+.||+++|+++++.|++..|+++||++|.+.+...+.++++.||++|+.|..+.++|..+|+.++... ..
T Consensus 47 pdvvl~Dl~mP~~~G~e~~~~l~~~~p~~~vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G~---~~ 123 (211)
T COG2197 47 PDVVLLDLSMPGMDGLEALKQLRARGPDIKVVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGG---TY 123 (211)
T ss_pred CCEEEEcCCCCCCChHHHHHHHHHHCCCCcEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC---eE
Confidence 799999999999999999999999999999999999999999999999999999999999999999999886432 12
Q ss_pred chhhhh----h---------hc-cCCchHHHHHHhhhccCCchhHHHHhhhccccccccccccccccccccchhhh
Q 040406 81 FTEEKS----S---------LA-NGSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENAAAPKKA 142 (566)
Q Consensus 81 l~~e~~----~---------l~-~~lS~re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~~lekl~~~s~KKa 142 (566)
+..... . .. ..+++||.+++..+++|.++++|++...++.+|++.|......|+.+..+.++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~LT~RE~eVL~lla~G~snkeIA~~L~iS~~TVk~h~~~i~~KL~v~~Rtea 199 (211)
T COG2197 124 LPPDIARKLAGLLPSSSAEAPLAELLTPRELEVLRLLAEGLSNKEIAEELNLSEKTVKTHVSNILRKLGVRNRTEA 199 (211)
T ss_pred eCHHHHHHHHhhcccccccccccCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHhHHHHHHHHHHHHcCCCCHHHH
Confidence 221110 0 01 25899999999999999999999999999999999999999999888775544
No 4
>PLN03162 golden-2 like transcription factor; Provisional
Probab=99.66 E-value=6.9e-17 Score=167.23 Aligned_cols=91 Identities=43% Similarity=0.587 Sum_probs=74.3
Q ss_pred ccchhhhhhhhchhhhhHHHHHHHHhcccchhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhhhhch------hcccc
Q 040406 136 AAAPKKAKVVWTNSLHNRFLQAIRHITLEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKRVADDGI------NAALK 209 (566)
Q Consensus 136 ~~s~KKarL~WTsELHeKFLaAIgKLGlEKAIPKrILElMnvpGLTrEEVaSHLQKyrl~lkrl~~~~~------~~~~~ 209 (566)
....||+|++||.+||++||++|.+||++||+||+||++|+|+|||+++|+|||||||++++++..... .+...
T Consensus 230 ~~g~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l~~rEaEa~swt~kr~~ 309 (526)
T PLN03162 230 APGKKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLAAREAEAASWTHRRAY 309 (526)
T ss_pred CCCCCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccccchhhhhccchhhhhh
Confidence 455789999999999999999999999999999999999999999999999999999999998764332 12222
Q ss_pred CC--CccCccccCcchhhH
Q 040406 210 NF--NHRSSLASGRTSMML 226 (566)
Q Consensus 210 ~~--~~~~~~~~~~~~~~~ 226 (566)
.. ..|+++..+.+.++.
T Consensus 310 ~~~P~~rs~~~~g~p~~~p 328 (526)
T PLN03162 310 TQAPWPRSSRRDGLPYLVP 328 (526)
T ss_pred ccCCcccCCCCCCCccccc
Confidence 22 356677777776544
No 5
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.61 E-value=5.6e-15 Score=145.37 Aligned_cols=136 Identities=16% Similarity=0.169 Sum_probs=114.7
Q ss_pred CcEEE---EeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHH-hcCCcEEEeCCCChHHHHHHHHHHHHhhc
Q 040406 1 IDLVI---TDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSL-ASGAVFYMVKPVNPDALRNVWQYAVTSKK 76 (566)
Q Consensus 1 pDLVL---lDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al-~aGA~dYL~KP~~~eeL~~aI~~vL~~~~ 76 (566)
||+|| +|+.||+++|++++++|++..|.+|||++|+.++.....+++ +.||.+||.||.+.++|..+|+.+++...
T Consensus 38 pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G~~ 117 (207)
T PRK11475 38 FSAVIFSLSAMRSERREGLSCLTELAIKFPRMRRLVIADDDIEARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNGVR 117 (207)
T ss_pred CCEEEeeccccCCCCCCHHHHHHHHHHHCCCCCEEEEeCCCCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCCCc
Confidence 68998 788999999999999999999999999999987776666655 79999999999999999999999875432
Q ss_pred CCCcchhhhh-----hhccCCchHHHHHHhhhccCCchhHHHHhhhccccccccccccccccccccch
Q 040406 77 GKSIFTEEKS-----SLANGSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENAAAP 139 (566)
Q Consensus 77 ~~~~l~~e~~-----~l~~~lS~re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~~lekl~~~s~ 139 (566)
....... .....++.||++++..+.+|.++++|++...++.+|++.++.....|..+..+
T Consensus 118 ---~~~~~~~~~~~~~~~~~LT~RE~eVL~ll~~G~snkeIA~~L~iS~~TV~~h~~~I~~KLgv~n~ 182 (207)
T PRK11475 118 ---QATDRLNNQWYINQSRMLSPTEREILRFMSRGYSMPQIAEQLERNIKTIRAHKFNVMSKLGVSSD 182 (207)
T ss_pred ---ccCHHHHHHhhccCcCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHcCCCCH
Confidence 2211111 11235999999999999999999999999999999999999999888877663
No 6
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.58 E-value=2.2e-14 Score=138.68 Aligned_cols=137 Identities=20% Similarity=0.222 Sum_probs=117.4
Q ss_pred CcEEEEeCCCCC---CCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhcC
Q 040406 1 IDLVITDLHMPE---MNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKKG 77 (566)
Q Consensus 1 pDLVLlDi~MPd---mDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~~ 77 (566)
||+||+|+.||+ ++|++++++|++..+.+|||++|...+......+++.||++||.||.+.++|..+|+.++....
T Consensus 50 ~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g~~- 128 (216)
T PRK10840 50 AHVLITDLSMPGDKYGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGKK- 128 (216)
T ss_pred CCEEEEeCcCCCCCCCCHHHHHHHHHHHCCCCcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCCCe-
Confidence 799999999999 5999999999998899999999999999999999999999999999999999999998864322
Q ss_pred CCcchhhh----------hhhccCCchHHHHHHhhhccCCchhHHHHhhhccccccccccccccccccccchh
Q 040406 78 KSIFTEEK----------SSLANGSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENAAAPK 140 (566)
Q Consensus 78 ~~~l~~e~----------~~l~~~lS~re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~~lekl~~~s~K 140 (566)
+..... ......+++||.+++..+.+|.++++|++...++.+|++.++.....|+.+..+.
T Consensus 129 --~~~~~~~~~~~~~~~~~~~~~~Lt~rE~evl~~~~~G~s~~eIA~~l~iS~~TV~~h~~~i~~Kl~v~~~~ 199 (216)
T PRK10840 129 --FTPESVSRLLEKISAGGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVENDI 199 (216)
T ss_pred --ecCHHHHHHHHHhccCCCccccCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHcCCCCHH
Confidence 111110 0012359999999999999999999999999999999999999998888776543
No 7
>PRK09483 response regulator; Provisional
Probab=99.49 E-value=4.1e-13 Score=127.20 Aligned_cols=136 Identities=17% Similarity=0.275 Sum_probs=116.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhcCCCc
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKKGKSI 80 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~~~~~ 80 (566)
||+||+|+.+|+++|+++++.+++..+.+|||++|...+.....+++..|+++|+.||++.++|..+++.+++... .
T Consensus 48 ~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g~~---~ 124 (217)
T PRK09483 48 VDVVLMDMNMPGIGGLEATRKILRYTPDVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQR---Y 124 (217)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCCCeEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCc---c
Confidence 6999999999999999999999998899999999999999899999999999999999999999999998875322 1
Q ss_pred chhhh-------------hhhccCCchHHHHHHhhhccCCchhHHHHhhhccccccccccccccccccccch
Q 040406 81 FTEEK-------------SSLANGSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENAAAP 139 (566)
Q Consensus 81 l~~e~-------------~~l~~~lS~re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~~lekl~~~s~ 139 (566)
...+. ......++.+|.+++..+..|.++.+|++...++.++++.+++....|+.+..+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~vl~~~~~G~~~~~Ia~~l~is~~TV~~~~~~i~~Kl~v~~~ 196 (217)
T PRK09483 125 IASDIAQQMALSQIEPATENPFASLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNISGD 196 (217)
T ss_pred cCHHHHHHHHHhhcccCCCccccccCHHHHHHHHHHHCCCCHHHHHHHhCCCHHHHHHHHHHHHHHcCCCCH
Confidence 11110 011245999999999999999999999999999999999999888888876554
No 8
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.47 E-value=4.5e-13 Score=132.63 Aligned_cols=137 Identities=9% Similarity=0.069 Sum_probs=111.4
Q ss_pred CcEEEEeCCCCCCCHHHHH-HHHHHhCCCCcEEEEecCCChHHHHHHHh--cCCcEEEeCCCChHHHHHHHHHHHHhhcC
Q 040406 1 IDLVITDLHMPEMNGLELQ-KEINEEFIHLPVMVMSSDDRESVIMKSLA--SGAVFYMVKPVNPDALRNVWQYAVTSKKG 77 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLL-e~Lr~~~p~IPVIvLSa~~d~~~~~~Al~--aGA~dYL~KP~~~eeL~~aI~~vL~~~~~ 77 (566)
|||||+|+.||+++|++++ +.+++..|.++||++|...+. ...++. .||.+||.|+.+.++|.++|+.+++..
T Consensus 53 ~DvvllDi~~p~~~G~~~~~~~i~~~~p~~~vvvlt~~~~~--~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G~-- 128 (216)
T PRK10100 53 GSIILLDMMEADKKLIHYWQDTLSRKNNNIKILLLNTPEDY--PYREIENWPHINGVFYAMEDQERVVNGLQGVLRGE-- 128 (216)
T ss_pred CCEEEEECCCCCccHHHHHHHHHHHhCCCCcEEEEECCchh--HHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcCC--
Confidence 6999999999999999997 568888999999999998763 334454 599999999999999999999886432
Q ss_pred CCcchhhhh--------------hhccCCchHHHHHHhhhccCCchhHHHHhhhccccccccccccccccccccchhhh
Q 040406 78 KSIFTEEKS--------------SLANGSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENAAAPKKA 142 (566)
Q Consensus 78 ~~~l~~e~~--------------~l~~~lS~re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~~lekl~~~s~KKa 142 (566)
.++..+.. .....++++|.+++..+.+|.++.+|++...++..+++.+......+..+..+.+.
T Consensus 129 -~~~~~~~~~~l~~~~~~~~~~~~~~~~Lt~rE~~Vl~l~~~G~s~~eIA~~L~iS~~TVk~~~~~i~~Kl~v~nr~el 206 (216)
T PRK10100 129 -CYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQA 206 (216)
T ss_pred -cccCHHHHHHHHHhhcccccCCCccCCCCHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCHHHH
Confidence 22211110 01234899999999999999999999999999999999999988888877665543
No 9
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.41 E-value=7.6e-13 Score=132.34 Aligned_cols=76 Identities=29% Similarity=0.477 Sum_probs=70.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHh-CCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhc
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEE-FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKK 76 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~-~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~ 76 (566)
||+||+|++||++||++++++||+. ...+||||+|+.++......++++||+|||+|||+++||..+|+.++++..
T Consensus 44 ~dlviLD~~lP~~dG~~~~~~iR~~~~~~~PIi~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~ 120 (229)
T COG0745 44 PDLVLLDLMLPDLDGLELCRRLRAKKGSGPPIIVLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNA 120 (229)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhhcCCCCcEEEEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCc
Confidence 7999999999999999999999964 457899999999999999999999999999999999999999999987653
No 10
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.37 E-value=2.3e-12 Score=126.18 Aligned_cols=127 Identities=13% Similarity=0.162 Sum_probs=100.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhcCC--
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKKGK-- 78 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~~~-- 78 (566)
||+||+|+.||+++|+++++.|++..+.++||++|+..+...+.++++.||++||.||++.++|..+|+++...+...
T Consensus 51 pdlvllD~~mp~~~gle~~~~l~~~~~~~~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~~~~~ 130 (225)
T PRK10046 51 PGLILLDNYLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHMLES 130 (225)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999998877899999999999999999999999999999999999999998875432210
Q ss_pred -Ccchhhh--------------hhh---ccCCchHHHHHHhhhccC---CchhHHHHhhhcccccccccccc
Q 040406 79 -SIFTEEK--------------SSL---ANGSSAEKISFLHDIVSG---SSMIEEKESKTNSKRKASKRRKD 129 (566)
Q Consensus 79 -~~l~~e~--------------~~l---~~~lS~re~evL~~IaqG---sS~~EIae~k~IS~~k~~~~~k~ 129 (566)
....... ... ...++.+ +++..+..| .+++||++...++..|++.+...
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~r--~Vl~~~~~g~~g~s~~eIa~~l~iS~~Tv~~~~~~ 200 (225)
T PRK10046 131 IDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLN--AVRKLFKEPGVQHTAETVAQALTISRTTARRYLEY 200 (225)
T ss_pred cCccCHHHHHHHHhhcccccccccCCCCCCHHHHH--HHHHHHHcCCCCcCHHHHHHHhCccHHHHHHHHHH
Confidence 0000000 000 1124444 778888885 89999999999999999888754
No 11
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.36 E-value=7.6e-12 Score=117.43 Aligned_cols=138 Identities=15% Similarity=0.147 Sum_probs=112.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhcCCCc
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKKGKSI 80 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~~~~~ 80 (566)
||+||+|+.+|+++|+++++.++...+.+|||++++..+.....++++.||++|+.||++.++|..+++.+++.......
T Consensus 46 ~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~~~~~~ 125 (204)
T PRK09958 46 PDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYFPF 125 (204)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcCCcccCH
Confidence 69999999999999999999999988889999999999989999999999999999999999999999988753221100
Q ss_pred chh-hh------hhhccCCchHHHHHHhhhccCCchhHHHHhhhccccccccccccccccccccc
Q 040406 81 FTE-EK------SSLANGSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENAAA 138 (566)
Q Consensus 81 l~~-e~------~~l~~~lS~re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~~lekl~~~s 138 (566)
... .. ......++.+|.+++..+.+|.+..+|++...++.++++.+......|.....
T Consensus 126 ~~~~~~~~~~~~~~~~~~lt~~E~~vl~~l~~g~~~~~I~~~l~~s~~tv~~~~~~l~~Kl~~~~ 190 (204)
T PRK09958 126 SLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKSRLMEKLECKS 190 (204)
T ss_pred HHHHHHHhccCCCcccccCCHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHcCCCC
Confidence 000 00 01123589999999999999999999999999999988888877766665444
No 12
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.36 E-value=6.7e-12 Score=117.54 Aligned_cols=138 Identities=18% Similarity=0.202 Sum_probs=113.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhcCCCc
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKKGKSI 80 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~~~~~ 80 (566)
||+||+|+.||+++|+++++.++...+.+|||++|+..+.....++++.|+++|+.||++.++|..+|+.++........
T Consensus 50 ~dlvild~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~~~~~~~ 129 (210)
T PRK09935 50 VDLIIMDIDLPGTDGFTFLKRIKQIQSTVKVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGYTFFPS 129 (210)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcCCceeCH
Confidence 69999999999999999999999888899999999999888889999999999999999999999999987654221000
Q ss_pred --chh--hhh-----hhccCCchHHHHHHhhhccCCchhHHHHhhhccccccccccccccccccccc
Q 040406 81 --FTE--EKS-----SLANGSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENAAA 138 (566)
Q Consensus 81 --l~~--e~~-----~l~~~lS~re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~~lekl~~~s 138 (566)
... ... .....++.+|..++..+.+|.+..+|++...++.++++.+......+..+..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~lt~re~~vl~~l~~g~s~~eIa~~l~~s~~tv~~~~~~~~~kl~~~~ 196 (210)
T PRK09935 130 ETLNYIKSNKCSTNSSTDTVLSNREVTILRYLVSGLSNKEIADQLLLSNKTVSAHKSNIYGKLGLHS 196 (210)
T ss_pred HHHHHHHhcccccCccccccCCHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHcCCCC
Confidence 000 000 0122489999999999999999999999999999999888877777765544
No 13
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.34 E-value=5.8e-12 Score=123.56 Aligned_cols=135 Identities=11% Similarity=0.072 Sum_probs=109.5
Q ss_pred CcEEEEeCC--CCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcE-EEeCCCChHHHHHHHHHHHHhhcC
Q 040406 1 IDLVITDLH--MPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVF-YMVKPVNPDALRNVWQYAVTSKKG 77 (566)
Q Consensus 1 pDLVLlDi~--MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~d-YL~KP~~~eeL~~aI~~vL~~~~~ 77 (566)
|||||+|+. |+..+|.+++++|++..|.++||++|+.++..... ++..|+.. |+.|+.+.++|..+|+.+.....
T Consensus 48 pDlvLlDl~~~l~~~~g~~~i~~i~~~~p~~~iivlt~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g~~- 125 (207)
T PRK15411 48 PSVVFINEDCFIHDASNSQRIKQIINQHPNTLFIVFMAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILKKET- 125 (207)
T ss_pred CCEEEEeCcccCCCCChHHHHHHHHHHCCCCeEEEEECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHcCCc-
Confidence 799999966 88889999999999999999999999987766543 55555554 89999999999999999875432
Q ss_pred CCcchhhhhhhccCCchHHHHHHhhhccCCchhHHHHhhhccccccccccccccccccccch
Q 040406 78 KSIFTEEKSSLANGSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENAAAP 139 (566)
Q Consensus 78 ~~~l~~e~~~l~~~lS~re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~~lekl~~~s~ 139 (566)
............+++||.+++..+++|.++++|++...++.++++.+++....|..+..+
T Consensus 126 --~~~~~~~~~~~~LT~RE~eVL~lla~G~snkeIA~~L~iS~~TVk~h~~~I~~KL~v~nr 185 (207)
T PRK15411 126 --TITSFLNLPTLSLSRTESSMLRMWMAGQGTIQISDQMNIKAKTVSSHKGNIKRKIKTHNK 185 (207)
T ss_pred --ccCccccCCcccCCHHHHHHHHHHHcCCCHHHHHHHcCCCHHHHHHHHHHHHHHhCCCcH
Confidence 111111011124999999999999999999999999999999999999999888876553
No 14
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.34 E-value=8.8e-12 Score=122.94 Aligned_cols=130 Identities=23% Similarity=0.242 Sum_probs=102.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhc---C
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKK---G 77 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~---~ 77 (566)
||+||+|+.||+++|+++++.|++..+.+|||++|+..+...+.++++.|+++||.||++.++|..+|++++.... +
T Consensus 50 ~DlvilD~~~p~~~G~eli~~l~~~~~~~~vI~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~~~~~~~~~~ 129 (239)
T PRK10430 50 IDLILLDIYMQQENGLDLLPVLHEAGCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKKMALEK 129 (239)
T ss_pred CCEEEEecCCCCCCcHHHHHHHHhhCCCCCEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 6999999999999999999999998889999999999999999999999999999999999999999987543221 1
Q ss_pred CCcchhhh---------------hhhccCCchHHHHHHhhh-----ccCCchhHHHHhhhccccccccccccc
Q 040406 78 KSIFTEEK---------------SSLANGSSAEKISFLHDI-----VSGSSMIEEKESKTNSKRKASKRRKDE 130 (566)
Q Consensus 78 ~~~l~~e~---------------~~l~~~lS~re~evL~~I-----aqGsS~~EIae~k~IS~~k~~~~~k~~ 130 (566)
........ ......++.++.+++..+ ..|.++++|+....++..+++.+....
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~re~~~l~~~i~~~~~~g~s~~eIA~~l~iS~~Tv~~~~~~~ 202 (239)
T PRK10430 130 HQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDELANAVNISRVSCRKYLIWL 202 (239)
T ss_pred cchhhHHHHHHHHhhccccccccccCCCCCCHHHHHHHHHHHHhCCCCCcCHHHHHHHhCchHHHHHHHHHHH
Confidence 11111100 001124677876665333 389999999999999999998887654
No 15
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.32 E-value=1.2e-11 Score=115.48 Aligned_cols=146 Identities=18% Similarity=0.274 Sum_probs=118.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhcCCCc
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKKGKSI 80 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~~~~~ 80 (566)
||+||+|+.+|+++|+++++.+++..+.+|+|+++...+......+++.|+++|+.||++.++|..+++.++........
T Consensus 53 ~dlvi~d~~~~~~~~~~~~~~l~~~~~~~~ii~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~~~~~~ 132 (215)
T PRK10403 53 PDVILLDLNMKGMSGLDTLNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSE 132 (215)
T ss_pred CCEEEEecCCCCCcHHHHHHHHHHhCCCCeEEEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhCCCeecCH
Confidence 69999999999999999999999988889999999988888888999999999999999999999999887543211000
Q ss_pred -ch----hhh-----hhhccCCchHHHHHHhhhccCCchhHHHHhhhccccccccccccccccccccchhhhhhhh
Q 040406 81 -FT----EEK-----SSLANGSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENAAAPKKAKVVW 146 (566)
Q Consensus 81 -l~----~e~-----~~l~~~lS~re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~~lekl~~~s~KKarL~W 146 (566)
.. ... ......++.+|.+++..+..|.+..+|++...++.++++.+......+..+..+....+.|
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~Lt~~e~~vl~~~~~g~s~~~ia~~l~~s~~tv~~~~~~i~~kl~~~~~~~~~~~~ 208 (215)
T PRK10403 133 RVNQYLREREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATILF 208 (215)
T ss_pred HHHHHHHhhhccCCCCcccccCCHHHHHHHHHHHCCCCHHHHHHHcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 00 000 0111348999999999999999999999999999999999988888888777766655544
No 16
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.32 E-value=4.9e-12 Score=124.72 Aligned_cols=129 Identities=20% Similarity=0.279 Sum_probs=96.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhcCC--
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKKGK-- 78 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~~~-- 78 (566)
|||||+|+.||+.+|++|+..++.....+-||++|+..+.+.+.+|++.||.|||.|||..+.|..++.+..+.+..-
T Consensus 47 pDLILLDiYmPd~~Gi~lL~~ir~~~~~~DVI~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r~~l~~ 126 (224)
T COG4565 47 PDLILLDIYMPDGNGIELLPELRSQHYPVDVIVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQKRHALES 126 (224)
T ss_pred CCEEEEeeccCCCccHHHHHHHHhcCCCCCEEEEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHHHHHHHhh
Confidence 699999999999999999999999999999999999999999999999999999999999999999998876543211
Q ss_pred -Ccchhh--------------hhhhccCCchHH----HHHHhhhccCCchhHHHHhhhcccccccccccc
Q 040406 79 -SIFTEE--------------KSSLANGSSAEK----ISFLHDIVSGSSMIEEKESKTNSKRKASKRRKD 129 (566)
Q Consensus 79 -~~l~~e--------------~~~l~~~lS~re----~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~ 129 (566)
..+.++ ...+..+++.-- .+.+..-.+..+..|.++...+|+-+++++...
T Consensus 127 ~~~~sQ~~lD~l~~~~~k~~~~~~LPkGi~~~Tl~~i~~~~~~~~~~~Taeela~~~giSRvTaRRYLey 196 (224)
T COG4565 127 HQQLSQKELDQLFNIQSKEQPPDDLPKGLDELTLQKVREALKEPDQELTAEELAQALGISRVTARRYLEY 196 (224)
T ss_pred hcccCHHHHHHHHhccccccCcccCCCCcCHHHHHHHHHHHhCcCCccCHHHHHHHhCccHHHHHHHHHH
Confidence 111111 111222222211 233343446778888888888887776655443
No 17
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.32 E-value=1.2e-11 Score=115.32 Aligned_cols=134 Identities=19% Similarity=0.286 Sum_probs=110.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhcCCCc
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKKGKSI 80 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~~~~~ 80 (566)
||+||+|+.||+++|+++++.++ +.+|||++|...+.....++++.||++|+.||++.++|..+|+.+++... .
T Consensus 48 ~dlvi~d~~~~~~~g~~~~~~l~---~~~~vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~~---~ 121 (196)
T PRK10360 48 VQVCICDISMPDISGLELLSQLP---KGMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGC---Y 121 (196)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHc---cCCCEEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCCe---e
Confidence 69999999999999999999886 36899999999999999999999999999999999999999998875321 1
Q ss_pred chhhh-----hhhccCCchHHHHHHhhhccCCchhHHHHhhhccccccccccccccccccccchh
Q 040406 81 FTEEK-----SSLANGSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENAAAPK 140 (566)
Q Consensus 81 l~~e~-----~~l~~~lS~re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~~lekl~~~s~K 140 (566)
...+. ......++.+|.+++..+.+|.+.++|++...++.++.+.+.+....+..+..+.
T Consensus 122 ~~~~~~~~~~~~~~~~Lt~~E~~il~~l~~g~~~~~Ia~~l~~s~~tv~~~~~~l~~Kl~~~~~~ 186 (196)
T PRK10360 122 LTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDV 186 (196)
T ss_pred eCHHHHHHHHhccccCCCHHHHHHHHHHHCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCHH
Confidence 11111 1112358999999999999999999999999999988888887777776655543
No 18
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.31 E-value=1.9e-11 Score=112.84 Aligned_cols=138 Identities=20% Similarity=0.268 Sum_probs=113.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhcCCCc
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKKGKSI 80 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~~~~~ 80 (566)
||+||+|+.+++++|+++++.+++..+.+|||++|+..+......++..|+.+|+.||++.++|...++.+++.......
T Consensus 50 ~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~~~ 129 (211)
T PRK15369 50 PDIVILDLGLPGMNGLDVIPQLHQRWPAMNILVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVGKRYIDP 129 (211)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCceeCH
Confidence 68999999999999999999999888899999999999988899999999999999999999999999887653221110
Q ss_pred chh--h-------hhhhccCCchHHHHHHhhhccCCchhHHHHhhhccccccccccccccccccccc
Q 040406 81 FTE--E-------KSSLANGSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENAAA 138 (566)
Q Consensus 81 l~~--e-------~~~l~~~lS~re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~~lekl~~~s 138 (566)
... . .......+++++.+++..+.+|.++.+|++...++.++++.+......+..+..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~lt~~e~~vl~l~~~g~~~~~Ia~~l~~s~~tv~~~~~~~~~kl~~~~ 196 (211)
T PRK15369 130 ALNREAILALLNADDTNPPLLTPRERQILKLITEGYTNRDIAEQLSISIKTVETHRLNMMRKLDVHK 196 (211)
T ss_pred HHHHHHHHHhccCCCCcccCCCHHHHHHHHHHHCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCC
Confidence 000 0 001123489999999999999999999999999999999888888777766555
No 19
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.31 E-value=2e-12 Score=103.32 Aligned_cols=54 Identities=61% Similarity=0.990 Sum_probs=51.4
Q ss_pred hhhhhhchhhhhHHHHHHHHhcc-cchhHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 040406 141 KAKVVWTNSLHNRFLQAIRHITL-EKAVPKKILEFMNVPGLTRENVASHLQKYRI 194 (566)
Q Consensus 141 KarL~WTsELHeKFLaAIgKLGl-EKAIPKrILElMnvpGLTrEEVaSHLQKyrl 194 (566)
++++.||.++|.+|+.+|..+|. +.|+|+.|+++|.+++||+++|+||+|||++
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~ 55 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL 55 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 46789999999999999999997 8899999999999999999999999999996
No 20
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.31 E-value=8.4e-12 Score=135.87 Aligned_cols=77 Identities=35% Similarity=0.524 Sum_probs=73.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhcC
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKKG 77 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~~ 77 (566)
||+||+|+.||++||++++++|++..|++|||+||++.+.+.+..|++.||.|||.|||+.++|..+|++++..++.
T Consensus 49 ~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~~ 125 (464)
T COG2204 49 FDLVLLDIRMPGMDGLELLKEIKSRDPDLPVIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELREL 125 (464)
T ss_pred CCEEEEecCCCCCchHHHHHHHHhhCCCCCEEEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhhh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999986543
No 21
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.30 E-value=2.5e-11 Score=113.69 Aligned_cols=140 Identities=22% Similarity=0.247 Sum_probs=115.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhcCCCc
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKKGKSI 80 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~~~~~ 80 (566)
||+||+|+.+++++|+++++.+++..+.+|+|+++...+......+++.|+++|+.||++.++|...++.++........
T Consensus 53 ~dlvl~d~~l~~~~~~~~~~~l~~~~~~~~vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~~~~~~~ 132 (216)
T PRK10651 53 PDLILLDLNMPGMNGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAGEMVLSE 132 (216)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCcccCH
Confidence 69999999999999999999999888899999999999888889999999999999999999999999988753211100
Q ss_pred c-----hhh-------hhhhccCCchHHHHHHhhhccCCchhHHHHhhhccccccccccccccccccccchh
Q 040406 81 F-----TEE-------KSSLANGSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENAAAPK 140 (566)
Q Consensus 81 l-----~~e-------~~~l~~~lS~re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~~lekl~~~s~K 140 (566)
. ... .......++++|.+++..+.+|.++.+|+....++.++++.+.+....++.+..+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~vl~~l~~g~~~~~ia~~l~is~~tV~~~~~~l~~Kl~~~~~~ 204 (216)
T PRK10651 133 ALTPVLAASLRANRATTERDVNQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRV 204 (216)
T ss_pred HHHHHHHHHhhcccCccccccccCCHHHHHHHHHHHcCCCHHHHHHHcCCCHHHHHHHHHHHHHHcCCCCHH
Confidence 0 000 00111248999999999999999999999999999999999988888777665543
No 22
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.26 E-value=1.4e-11 Score=134.18 Aligned_cols=74 Identities=31% Similarity=0.486 Sum_probs=71.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
|||||+|+.||.|||+++++.+++..|++.+||+|++++.+.+.+|++.|+.|||+||++.++|..++.++...
T Consensus 49 pDiviTDI~MP~mdGLdLI~~ike~~p~~~~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~k 122 (475)
T COG4753 49 PDIVITDINMPGMDGLDLIKAIKEQSPDTEFIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGK 122 (475)
T ss_pred CCEEEEecCCCCCcHHHHHHHHHHhCCCceEEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999988654
No 23
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.23 E-value=6.4e-11 Score=111.91 Aligned_cols=127 Identities=18% Similarity=0.234 Sum_probs=99.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhcCCC-
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKKGKS- 79 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~~~~- 79 (566)
||+||+|+.||+++|+++++.++...+.+|||++|+..+.....++++.||++|+.||++.++|..+++.+++......
T Consensus 45 ~dlvild~~l~~~~g~~~~~~i~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~~~~~~ 124 (219)
T PRK10336 45 YDAVILDLTLPGMDGRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQAS 124 (219)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHhccccCCC
Confidence 6999999999999999999999988889999999999999999999999999999999999999999998876432110
Q ss_pred --------cchhhh-----hhhccCCchHHHHHHhhhccC----CchhHHHHhhh-----cccccccccc
Q 040406 80 --------IFTEEK-----SSLANGSSAEKISFLHDIVSG----SSMIEEKESKT-----NSKRKASKRR 127 (566)
Q Consensus 80 --------~l~~e~-----~~l~~~lS~re~evL~~IaqG----sS~~EIae~k~-----IS~~k~~~~~ 127 (566)
.+.... ......++.+|.+++..+.++ .+..+++.... ++.++...+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~E~~il~~l~~~~~~~~s~~~i~~~l~~~~~~~~~~tv~~~i 194 (219)
T PRK10336 125 NELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHV 194 (219)
T ss_pred CceeECCEEEEcccCEEEECCEEEecCHHHHHHHHHHHhCCCccCcHHHHHHHhcCCCCCCCccCHHHHH
Confidence 000000 011124899999999999887 78888887654 4555444444
No 24
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.21 E-value=6.2e-11 Score=101.52 Aligned_cols=69 Identities=33% Similarity=0.623 Sum_probs=66.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQ 69 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~ 69 (566)
||+||+|+.|++++|+++++.|+...+.+|||++|...+.....++++.|+++||.||++.++|.++|+
T Consensus 44 ~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 44 PDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp ESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred ceEEEEEeeeccccccccccccccccccccEEEecCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 699999999999999999999999999999999999999999999999999999999999999999874
No 25
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.20 E-value=1e-10 Score=110.98 Aligned_cols=119 Identities=19% Similarity=0.218 Sum_probs=95.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhcCCCc
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKKGKSI 80 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~~~~~ 80 (566)
||+||+|+.||+.+|+++++.+++..+.+|||++|+..+......+++.||++|+.||++.++|..+++.+++.......
T Consensus 48 ~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~ 127 (228)
T PRK11083 48 PDLVILDVGLPDISGFELCRQLLAFHPALPVIFLTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRVKKFAA 127 (228)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEEcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCccccccC
Confidence 69999999999999999999999988899999999999888888999999999999999999999999988764322100
Q ss_pred chh-----------hh-----hhhccCCchHHHHHHhhhccC----CchhHHHHhhhcc
Q 040406 81 FTE-----------EK-----SSLANGSSAEKISFLHDIVSG----SSMIEEKESKTNS 119 (566)
Q Consensus 81 l~~-----------e~-----~~l~~~lS~re~evL~~IaqG----sS~~EIae~k~IS 119 (566)
... .. ......++.+|.+++..+.++ .+..+|++....+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~E~~il~~l~~~~~~~~s~~~i~~~l~~~ 186 (228)
T PRK11083 128 PSPVIRIGHFELDEPAARISYFGTPLTLTRYEFLLLKTLLLSPGRVFSRQQLMDIVWED 186 (228)
T ss_pred CCceeEECCEEEecCccEEEECCEEeecCHHHHHHHHHHHhCCCceECHHHHHHHhcCC
Confidence 000 00 011134899999999999885 8888888876654
No 26
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.16 E-value=1.4e-10 Score=106.66 Aligned_cols=136 Identities=21% Similarity=0.293 Sum_probs=108.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhcCCCc
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKKGKSI 80 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~~~~~ 80 (566)
||+||+|+.+++++|+++++.+++..+.+|||+++...+......+++.|+.+|+.||++.++|...++.++........
T Consensus 48 ~d~ii~d~~~~~~~~~~~~~~l~~~~~~~~ii~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~~~~~~~~ 127 (202)
T PRK09390 48 FGCVVTDVRMPGIDGIELLRRLKARGSPLPVIVMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALAQAPEAAK 127 (202)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHHhhhhccc
Confidence 68999999999999999999999888899999999999888999999999999999999999999999887764321111
Q ss_pred ---chhhhhhhccCCchHHHHHHhhhccCCchhHHHHhhhccccccccccccccccccc
Q 040406 81 ---FTEEKSSLANGSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENA 136 (566)
Q Consensus 81 ---l~~e~~~l~~~lS~re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~~lekl~~ 136 (566)
...........++.++.+++..+..|.+..+|+....++..+++.+......+...
T Consensus 128 ~~~~~~~~~~~~~~l~~~e~~vl~~~~~~~~~~~ia~~l~~s~~tv~~~~~~~~~kl~~ 186 (202)
T PRK09390 128 SEAVAADIRARIASLSERERQVMDGLVAGLSNKVIARDLDISPRTVEVYRANVMTKMQA 186 (202)
T ss_pred chhHHHHHHHHHHhhhhhHHHHHHHHHccCchHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence 11111223345788889999888889999999998888877777666555444433
No 27
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.15 E-value=3.3e-10 Score=108.37 Aligned_cols=128 Identities=16% Similarity=0.212 Sum_probs=95.8
Q ss_pred CcEEEEeCCCCC--CCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhcCC
Q 040406 1 IDLVITDLHMPE--MNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKKGK 78 (566)
Q Consensus 1 pDLVLlDi~MPd--mDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~~~ 78 (566)
||+||+|+.||+ .+|+++++.++...+.+|||++|+..+......++++||++|+.||++.++|..+++.+++.....
T Consensus 45 ~dlvild~~l~~~~~~g~~~~~~i~~~~~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~~ 124 (227)
T TIGR03787 45 PDLAIIDIGLGEEIDGGFMLCQDLRSLSATLPIIFLTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRRAEAL 124 (227)
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHhhhhc
Confidence 699999999998 589999999998878899999999999999999999999999999999999999999887653210
Q ss_pred C-------cch-------hhhh-----hhccCCchHHHHHHhhhcc--CC--chhHHH--Hhhhccccccccccc
Q 040406 79 S-------IFT-------EEKS-----SLANGSSAEKISFLHDIVS--GS--SMIEEK--ESKTNSKRKASKRRK 128 (566)
Q Consensus 79 ~-------~l~-------~e~~-----~l~~~lS~re~evL~~Iaq--Gs--S~~EIa--e~k~IS~~k~~~~~k 128 (566)
. ... .... .....++.+|.+++..+.+ |. +..++. ....++.++...+..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~E~~il~~l~~~~g~v~s~~~i~~~~~~~~~~~tv~~~v~ 199 (227)
T TIGR03787 125 QKPQKQDDLITRGPLTLDSDRMTVFWQDQPIDLTVTEFWMVHALAKHPGHVKSRQQLMDAAKIVVDDSTITSHIK 199 (227)
T ss_pred cccccccceEEECCEEEEcccCEEEECCEEecCCHHHHHHHHHHHhCCCccccHHHHHHHhhhcCCccCHHHHHH
Confidence 0 000 0000 0113489999999999987 54 777773 333334444444443
No 28
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.14 E-value=3.5e-10 Score=106.87 Aligned_cols=113 Identities=22% Similarity=0.351 Sum_probs=88.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhcCCCc
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKKGKSI 80 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~~~~~ 80 (566)
||+||+|+.||+++|+++++.++...+.+|||++|+..+.....++++.||++|+.||++.++|..+++.+++.......
T Consensus 45 ~d~illd~~~~~~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~ 124 (222)
T PRK10643 45 YSLVVLDLGLPDEDGLHLLRRWRQKKYTLPVLILTARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIRRHQGQGE 124 (222)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhhhccccC
Confidence 69999999999999999999999888889999999999999999999999999999999999999999988765332111
Q ss_pred chhh---------h-----hhhccCCchHHHHHHhhhc--cCCch-hHHH
Q 040406 81 FTEE---------K-----SSLANGSSAEKISFLHDIV--SGSSM-IEEK 113 (566)
Q Consensus 81 l~~e---------~-----~~l~~~lS~re~evL~~Ia--qGsS~-~EIa 113 (566)
.... . ......++.+|.+++..+. .|... .++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~E~~il~~l~~~~g~~~~~~~~ 174 (222)
T PRK10643 125 NELQVGNLTLNLGRQQVWLDGQELILTPKEFALLSRLMLKAGSPVHREIL 174 (222)
T ss_pred CceEECCEEEEcCCCEEEECCEEEecCHHHHHHHHHHHhCCCceEcHHHH
Confidence 0000 0 0112348889999887765 56653 4444
No 29
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.12 E-value=2.7e-10 Score=107.67 Aligned_cols=130 Identities=16% Similarity=0.252 Sum_probs=95.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHh--CCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhcCC
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKKGK 78 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~--~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~~~ 78 (566)
||+||+|+.||+++|+++++.++.. .+.+|||++|+..+.....++++.||++|+.||++.++|..+++.+++.....
T Consensus 47 ~d~vi~d~~~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~~ 126 (226)
T TIGR02154 47 PDLILLDWMLPGTSGIELCRRLRRRPETRAIPIIMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRRIRPQ 126 (226)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHccccCCCCCEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhcccccc
Confidence 7999999999999999999999875 36799999999999889999999999999999999999999999887643211
Q ss_pred Cc---ch------h-hh-----hhhccCCchHHHHHHhhhcc----CCchhHHHH-----hhhccccccccccccc
Q 040406 79 SI---FT------E-EK-----SSLANGSSAEKISFLHDIVS----GSSMIEEKE-----SKTNSKRKASKRRKDE 130 (566)
Q Consensus 79 ~~---l~------~-e~-----~~l~~~lS~re~evL~~Iaq----GsS~~EIae-----~k~IS~~k~~~~~k~~ 130 (566)
.. .. . .. ......++.+|.+++..+.+ +.+..++.. ...++.++...+....
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~E~~il~~l~~~~~~~~s~~~i~~~~~~~~~~~~~~tv~~~i~~l 202 (226)
T TIGR02154 127 LSDEVIEVGDLSLDPVAHRVFRGGQPLSLGPTEFRLLHFFMTHPERVYSREQLLDRVWGRDVYVEERTVDVHIRRL 202 (226)
T ss_pred cccCceEECCEEEEcCccEEEECCEEEEcCHHHHHHHHHHHhCCCceEcHHHHHHHhcCCCCCCCCccHHHHHHHH
Confidence 10 00 0 00 01113489999999988887 456555532 2344444444444333
No 30
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.10 E-value=5.4e-10 Score=106.76 Aligned_cols=108 Identities=20% Similarity=0.279 Sum_probs=85.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhcCCCc
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKKGKSI 80 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~~~~~ 80 (566)
||+||+|+.||+++|+++++.+++..+ +|||++|+..+.....++++.||++||.||++.++|..+++.+++.......
T Consensus 45 ~d~vl~d~~~~~~~g~~~~~~l~~~~~-~~ii~lt~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~ 123 (232)
T PRK10955 45 IDLLLLDVMMPKKNGIDTLKELRQTHQ-TPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSEQ 123 (232)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHhcCC-CcEEEEECCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhccccccc
Confidence 699999999999999999999998775 9999999999888889999999999999999999999999988764321100
Q ss_pred -c---------h-hh------hh-----hhccCCchHHHHHHhhhccCCch
Q 040406 81 -F---------T-EE------KS-----SLANGSSAEKISFLHDIVSGSSM 109 (566)
Q Consensus 81 -l---------~-~e------~~-----~l~~~lS~re~evL~~IaqGsS~ 109 (566)
. . .. .. .....++.+|.+++..+.++...
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~E~~~l~~l~~~~~~ 174 (232)
T PRK10955 124 QQNNDNGSPTLEVDALSLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQ 174 (232)
T ss_pred cccccCCCceEEECCEEEecCCCEEEECCEEecCCHHHHHHHHHHHhCCCc
Confidence 0 0 00 00 01124899999999988887753
No 31
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.07 E-value=8.9e-10 Score=103.79 Aligned_cols=115 Identities=18% Similarity=0.225 Sum_probs=90.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhcCCCc
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKKGKSI 80 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~~~~~ 80 (566)
||+||+|+.||+++|+++++.++...+.+|||+++...+.....++++.||++|+.||++.++|..+++.+++.......
T Consensus 43 ~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~iivls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~ 122 (218)
T TIGR01387 43 YDLIILDVMLPGMDGWQILQTLRRSGKQTPVLFLTARDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRRSHSLNS 122 (218)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHccCCCCcEEEEEcCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhcccccCCC
Confidence 69999999999999999999999888899999999999999999999999999999999999999999988754322111
Q ss_pred chhhh--------------hhhccCCchHHHHHHhhhccC----CchhHHHHh
Q 040406 81 FTEEK--------------SSLANGSSAEKISFLHDIVSG----SSMIEEKES 115 (566)
Q Consensus 81 l~~e~--------------~~l~~~lS~re~evL~~IaqG----sS~~EIae~ 115 (566)
..... ......++.+|.+++..+++. .+..++...
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~E~~il~~l~~~~~~~~sr~~i~~~ 175 (218)
T TIGR01387 123 TVLEIADLRMDSVRHRVSRGNIRITLTRKEFQLLWLLMRRTGEVLPRTVIASL 175 (218)
T ss_pred CeEEECCEEEEcccCEEEECCEEEeCCHHHHHHHHHHHhCCCeeEcHHHHHHH
Confidence 00000 011124889999999888876 555555554
No 32
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.05 E-value=1.6e-09 Score=102.31 Aligned_cols=116 Identities=20% Similarity=0.272 Sum_probs=91.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhcCCCc
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKKGKSI 80 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~~~~~ 80 (566)
||+||+|+.+|+++|+++++.++...+++|||+++...+.....++++.|+++|+.||++.++|...++.+++.......
T Consensus 45 ~d~vild~~~~~~~~~~~~~~i~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~~~~~~ 124 (221)
T PRK15479 45 YALAVLDINMPGMDGLEVLQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSAGQVQ 124 (221)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhhhccCcC
Confidence 68999999999999999999999888899999999999988889999999999999999999999999887764322110
Q ss_pred chhhh-------------hhhccCCchHHHHHHhhhccCC----chhHHHHhh
Q 040406 81 FTEEK-------------SSLANGSSAEKISFLHDIVSGS----SMIEEKESK 116 (566)
Q Consensus 81 l~~e~-------------~~l~~~lS~re~evL~~IaqGs----S~~EIae~k 116 (566)
...+. ......++.+|.+++..+.++. +..++.+..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~Lt~~E~~il~~l~~~~~~~~~~~~i~~~l 177 (221)
T PRK15479 125 EVQQLGELIFHDEGYFLLQGQPLALTPREQALLTVLMYRRTRPVSRQQLFEQV 177 (221)
T ss_pred ccEEECCEEEccCCeEEECCEEEecCHHHHHHHHHHHhCCCCcCcHHHHHHHh
Confidence 00000 0011248999999998888754 456666554
No 33
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.03 E-value=1.4e-09 Score=104.35 Aligned_cols=115 Identities=26% Similarity=0.328 Sum_probs=90.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhcCC--
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKKGK-- 78 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~~~-- 78 (566)
||+||+|+.||+.+|+++++.+++. +.+|||++|+..+......+++.||++||.||++.++|..+++.+++.....
T Consensus 51 ~d~illd~~~~~~~g~~~~~~l~~~-~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~~~~~~ 129 (240)
T CHL00148 51 PDLVILDVMMPKLDGYGVCQEIRKE-SDVPIIMLTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRRTNKKSF 129 (240)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc-CCCcEEEEECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhcccccc
Confidence 6999999999999999999999975 6899999999999888899999999999999999999999999887653211
Q ss_pred ------C-cch-------hhh-----hhhccCCchHHHHHHhhhcc----CCchhHHHHhh
Q 040406 79 ------S-IFT-------EEK-----SSLANGSSAEKISFLHDIVS----GSSMIEEKESK 116 (566)
Q Consensus 79 ------~-~l~-------~e~-----~~l~~~lS~re~evL~~Iaq----GsS~~EIae~k 116 (566)
. ... ... ......++.+|.+++..+.. +.+..++++..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~E~~il~~l~~~~~~~~s~~~i~~~l 190 (240)
T CHL00148 130 SSKIPNSSIIRIGFLKIDLNKKQVYKNNERIRLTGMEFSLLELLISKSGEIFSRATILKEV 190 (240)
T ss_pred ccccCCCceEEECCEEEEcCCCEEEECCEEEEcCHHHHHHHHHHHHCCCEEEcHHHHHHHh
Confidence 0 000 000 01112388899999988764 67888888765
No 34
>PRK10693 response regulator of RpoS; Provisional
Probab=98.96 E-value=3.2e-09 Score=109.72 Aligned_cols=75 Identities=32% Similarity=0.477 Sum_probs=69.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCC-ChHHHHHHHHHHHHhh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPV-NPDALRNVWQYAVTSK 75 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~-~~eeL~~aI~~vL~~~ 75 (566)
||+||+|+.||+++|+++++++++..+.+|||++|+..+.+.+.++++.||+|||.||+ +.++|..+|+++++..
T Consensus 18 pDlVL~D~~mp~~~Gle~~~~ir~~~~~ipiI~lt~~~~~~~~~~al~~Ga~dyl~KP~~~~~~L~~~i~~~l~~~ 93 (303)
T PRK10693 18 PDLIICDLAMPRMNGIEFVEHLRNRGDQTPVLVISATENMADIAKALRLGVQDVLLKPVKDLNRLREMVFACLYPS 93 (303)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHHCCCcEEEECCCCcHHHHHHHHHHHhhhh
Confidence 69999999999999999999999888899999999999999999999999999999999 5899999998877543
No 35
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=98.96 E-value=4.8e-09 Score=100.64 Aligned_cols=113 Identities=19% Similarity=0.284 Sum_probs=86.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHh--CCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhcCC
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKKGK 78 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~--~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~~~ 78 (566)
||+||+|+.||+++|+++++.+++. .+.+|||++|+..+.....++++.||++||.||++.++|..+|+.+++.....
T Consensus 47 ~dlvild~~l~~~~g~~~~~~l~~~~~~~~~pvi~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~~~~ 126 (229)
T PRK10161 47 PDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPM 126 (229)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhccccCCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhccccc
Confidence 6999999999999999999999875 36899999999999999999999999999999999999999999887642110
Q ss_pred ---Ccch-------hhh-----hhhccCCchHHHHHHhhhcc----CCchhHHH
Q 040406 79 ---SIFT-------EEK-----SSLANGSSAEKISFLHDIVS----GSSMIEEK 113 (566)
Q Consensus 79 ---~~l~-------~e~-----~~l~~~lS~re~evL~~Iaq----GsS~~EIa 113 (566)
.... ... ......++.+|.+++..+.+ +.+..++.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~E~~ll~~l~~~~~~~~s~~~l~ 180 (229)
T PRK10161 127 AVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 (229)
T ss_pred CcCceeEECCEEEEcCcCEEEECCEEEEcCHHHHHHHHHHHhCCCceEcHHHHH
Confidence 0000 000 00112488899999887774 45544443
No 36
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=98.95 E-value=5.6e-09 Score=99.75 Aligned_cols=74 Identities=30% Similarity=0.496 Sum_probs=68.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSK 75 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~ 75 (566)
||+||+|+.||+++|+++++.+++. +.+|||++|+..+.....++++.||++||.||++.++|...++.+++..
T Consensus 46 ~dlvild~~l~~~~g~~~~~~lr~~-~~~pvi~lt~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~~ 119 (225)
T PRK10529 46 PDLIILDLGLPDGDGIEFIRDLRQW-SAIPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (225)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHcC-CCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 6999999999999999999999874 5899999999999999999999999999999999999999999887653
No 37
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=98.95 E-value=5.3e-09 Score=91.68 Aligned_cols=73 Identities=27% Similarity=0.487 Sum_probs=63.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHH-HHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDA-LRNVWQYAVT 73 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~ee-L~~aI~~vL~ 73 (566)
||+|++|+.||++||++++++++...+.+|||++|+........++++.|+++|+.||+...+ |..++++++.
T Consensus 52 ~dlii~D~~mp~~~G~~~~~~l~~~~~~~pvv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~ 125 (130)
T COG0784 52 PDLILLDINMPGMDGIELLRRLRARGPNIPVILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLA 125 (130)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHH
Confidence 699999999999999999999998867888999999988887778899999999999977666 7777775543
No 38
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=98.94 E-value=5.6e-09 Score=100.25 Aligned_cols=127 Identities=20% Similarity=0.267 Sum_probs=94.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhcCCCc
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKKGKSI 80 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~~~~~ 80 (566)
||+||+|+.||+++|+++++.++. .+.+|||+++...+......+++.||++|+.||++.++|...++.+++.......
T Consensus 55 ~dlvl~d~~~~~~~g~~~~~~l~~-~~~~pii~l~~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~~~~~~~~ 133 (240)
T PRK10710 55 PDLILLDLMLPGTDGLTLCREIRR-FSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQRE 133 (240)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cCCCCEEEEEcCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHhhccccCC
Confidence 699999999999999999999986 4589999999998888888999999999999999999999999888764321110
Q ss_pred -----------chhhh-----hhhccCCchHHHHHHhhhcc----CCchhHHHHhhh-----ccccccccccc
Q 040406 81 -----------FTEEK-----SSLANGSSAEKISFLHDIVS----GSSMIEEKESKT-----NSKRKASKRRK 128 (566)
Q Consensus 81 -----------l~~e~-----~~l~~~lS~re~evL~~Iaq----GsS~~EIae~k~-----IS~~k~~~~~k 128 (566)
..... ......++.+|.+++..+.+ +.+..++++... ++.+++..+..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~e~~il~~l~~~~~~~~s~~~i~~~~~~~~~~~~~~tv~~~i~ 206 (240)
T PRK10710 134 LQQQDAESPLIIDESRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYDDYRVVTDRTIDSHIK 206 (240)
T ss_pred CccceEeCCEEEEcCceEEEECCEEeecCHHHHHHHHHHHhCCCceEcHHHHHHHhcCcCcCCCccCHHHHHH
Confidence 00000 01123488999999988876 567777777654 44444444443
No 39
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=98.93 E-value=5.1e-09 Score=100.07 Aligned_cols=74 Identities=24% Similarity=0.413 Sum_probs=69.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
||+||+|+.||+++|+++++.+++..+.+|||++|+..+.....++++.||++|+.||++.++|...++.+++.
T Consensus 45 ~dlvild~~l~~~~g~~l~~~lr~~~~~~pii~ls~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~ 118 (223)
T PRK10816 45 PDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (223)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhc
Confidence 69999999999999999999999888899999999999999999999999999999999999999999988754
No 40
>PLN03029 type-a response regulator protein; Provisional
Probab=98.93 E-value=3.2e-09 Score=105.10 Aligned_cols=75 Identities=36% Similarity=0.577 Sum_probs=67.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhC--CCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEF--IHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSK 75 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~--p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~ 75 (566)
+||||+|+.||+++|+++++.|++.. .++|||++|+........++++.|+++||.||+...+|..++.++++.+
T Consensus 73 ~dlVllD~~mp~~~G~e~l~~ir~~~~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~~~~ 149 (222)
T PLN03029 73 VNLIITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMKTK 149 (222)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhccccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHHHHH
Confidence 46999999999999999999999753 5899999999999999999999999999999999999988888776543
No 41
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=98.92 E-value=6e-09 Score=99.85 Aligned_cols=74 Identities=23% Similarity=0.381 Sum_probs=69.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
||+||+|+.||+++|+++++.+++..+.+|||++|+..+.....++++.||++||.||++.++|..+++.+++.
T Consensus 45 ~dlvild~~~~~~~g~~~~~~lr~~~~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (227)
T PRK09836 45 YDLIILDIMLPDVNGWDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 (227)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 69999999999999999999999887899999999999999999999999999999999999999999887753
No 42
>PRK09581 pleD response regulator PleD; Reviewed
Probab=98.86 E-value=4.5e-09 Score=110.45 Aligned_cols=74 Identities=19% Similarity=0.408 Sum_probs=68.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHh--CCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~--~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
|||||+|+.||+++|+++++++++. .+.+|||++|++.+.+.+.+|++.||+|||.||++.++|...|...++.
T Consensus 199 ~d~vi~d~~~p~~~g~~l~~~i~~~~~~~~~~ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~~~ 274 (457)
T PRK09581 199 YDLVIVSANFENYDPLRLCSQLRSKERTRYVPILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQIRR 274 (457)
T ss_pred CCEEEecCCCCCchHhHHHHHHHhccccCCCcEEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHHHH
Confidence 7999999999999999999999974 4799999999999999999999999999999999999999988776543
No 43
>PRK11173 two-component response regulator; Provisional
Probab=98.86 E-value=1.1e-08 Score=99.32 Aligned_cols=73 Identities=33% Similarity=0.521 Sum_probs=67.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
||+||+|+.||+++|+++++.+++. +.+|||++|+..+......+++.||++||.||++.++|...++.+++.
T Consensus 48 ~dlvild~~l~~~~g~~~~~~lr~~-~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r 120 (237)
T PRK11173 48 INLVIMDINLPGKNGLLLARELREQ-ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 (237)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHhcC-CCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 6999999999999999999999975 589999999999988888999999999999999999999999988765
No 44
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=98.86 E-value=1.7e-08 Score=95.82 Aligned_cols=105 Identities=19% Similarity=0.313 Sum_probs=82.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhcCCC-
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKKGKS- 79 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~~~~- 79 (566)
||+||+|+.||+++|+++++.+++. +.+|||++++..+.....++++.||++|+.||++.++|..+++.+++......
T Consensus 45 ~dlvi~d~~~~~~~g~~~~~~l~~~-~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~ 123 (223)
T PRK11517 45 YALIILDIMLPGMDGWQILQTLRTA-KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALNS 123 (223)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHcC-CCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHccccCcCC
Confidence 6999999999999999999999875 47999999999999999999999999999999999999999998875432111
Q ss_pred cchh-------hh-----hhhccCCchHHHHHHhhhccC
Q 040406 80 IFTE-------EK-----SSLANGSSAEKISFLHDIVSG 106 (566)
Q Consensus 80 ~l~~-------e~-----~~l~~~lS~re~evL~~IaqG 106 (566)
.... .. ......++.+|.+++..++..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~Lt~~E~~il~~l~~~ 162 (223)
T PRK11517 124 TLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASR 162 (223)
T ss_pred eEEECCEEEEcCCCEEEECCEEEeCCHHHHHHHHHHHhC
Confidence 0000 00 011124788888888777654
No 45
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=98.85 E-value=1.3e-08 Score=98.45 Aligned_cols=74 Identities=23% Similarity=0.406 Sum_probs=69.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
||+||+|+.||+++|+++++.++...+.+|||++++..+......+++.||++||.||++.++|..+++.+++.
T Consensus 50 ~dlvild~~l~~~~g~~~~~~lr~~~~~~pii~ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r 123 (239)
T PRK09468 50 FHLMVLDLMLPGEDGLSICRRLRSQNNPTPIIMLTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRR 123 (239)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhcc
Confidence 69999999999999999999999887899999999999999899999999999999999999999999988754
No 46
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=98.82 E-value=2e-08 Score=95.62 Aligned_cols=73 Identities=21% Similarity=0.352 Sum_probs=67.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
||+||+|+.||+++|+++++.+++. +.+|||++++..+.....++++.||++||.||++.++|...++.+++.
T Consensus 47 ~dlvild~~l~~~~g~~~~~~lr~~-~~~~ii~l~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r 119 (221)
T PRK10766 47 VDLILLDINLPGEDGLMLTRELRSR-STVGIILVTGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWR 119 (221)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC-CCCCEEEEECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhh
Confidence 6999999999999999999999975 589999999999998899999999999999999999999999888754
No 47
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.81 E-value=1.7e-08 Score=109.54 Aligned_cols=76 Identities=29% Similarity=0.576 Sum_probs=70.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHh--CCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhc
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKK 76 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~--~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~ 76 (566)
||+||+|+.||++||+++++++|.. ...+|||++++.++.....+|++.|+.|||.||+...+|...+++.++..+
T Consensus 177 ~dlil~d~~mp~~dg~el~~~lr~~~~t~~ipii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~ 254 (435)
T COG3706 177 PDLVLLDANMPDMDGLELCTRLRQLERTRDIPIILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKR 254 (435)
T ss_pred CcEEEEecCCCccCHHHHHHHHhcccccccccEEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhhh
Confidence 7999999999999999999999975 357999999999999999999999999999999999999999998887654
No 48
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=98.81 E-value=2.3e-08 Score=97.58 Aligned_cols=75 Identities=24% Similarity=0.428 Sum_probs=63.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhc
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKK 76 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~ 76 (566)
||+||+|+.+|..|-.+- -.+....+..|||++|++.+...+..+++.|+.+||+||++...|+..+.-+.+...
T Consensus 51 pDvVildie~p~rd~~e~-~~~~~~~~~~piv~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~srf~ 125 (194)
T COG3707 51 PDVVILDIEMPRRDIIEA-LLLASENVARPIVALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAVSRFE 125 (194)
T ss_pred CCEEEEecCCCCccHHHH-HHHhhcCCCCCEEEEEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHHHHH
Confidence 799999999999993322 233344567899999999999999999999999999999999999999988776543
No 49
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=98.80 E-value=1.1e-08 Score=118.59 Aligned_cols=72 Identities=31% Similarity=0.524 Sum_probs=67.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhC-CCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEF-IHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAV 72 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~-p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL 72 (566)
||+|++|++||.|||+++.++||+.. ..+|||++|++.+.....+|++.|.++||.||+..+.|..++++++
T Consensus 712 y~~ifmD~qMP~mDG~e~~~~irk~~~~~~pIvAlTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~ 784 (786)
T KOG0519|consen 712 YDVIFMDLQMPEMDGYEATREIRKKERWHLPIVALTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREFL 784 (786)
T ss_pred ccEEEEEcCCcccchHHHHHHHHHhhcCCCCEEEEecCCcHHHHHHHHHhCCceEEcccccHHHHHHHHHHHh
Confidence 79999999999999999999999743 5899999999999999999999999999999999999999988775
No 50
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=98.80 E-value=2.5e-08 Score=99.36 Aligned_cols=74 Identities=24% Similarity=0.441 Sum_probs=68.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCC--CcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIH--LPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~--IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
||+||+|+.||++||+++++.+++..+. +|||++|+........++++.|+++|+.||++.++|...|++++..
T Consensus 49 ~DlvllD~~mp~~dG~~~l~~i~~~~~~~~~~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 49 PDVVVLDIIMPHLDGIGVLEKLNEIELSARPRVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhccccCCeEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 7999999999999999999999987655 8999999999999999999999999999999999999999887643
No 51
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.76 E-value=3.2e-08 Score=106.40 Aligned_cols=74 Identities=26% Similarity=0.378 Sum_probs=69.3
Q ss_pred CcEEEEeCCCCC-----CCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPE-----MNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPd-----mDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
||+||+|+.||+ ++|+++++.+++..+.+|||++|+..+.+.+.++++.||++||.||++.++|..+|++++..
T Consensus 41 ~dlvllD~~mp~~~~~~~~g~~~l~~i~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~ 119 (445)
T TIGR02915 41 PAVVTLDLGLPPDADGASEGLAALQQILAIAPDTKVIVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFHL 119 (445)
T ss_pred CCEEEEeCCCCCCcCCCCCHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhhh
Confidence 699999999996 89999999999999999999999999999999999999999999999999999999887653
No 52
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=98.75 E-value=4.9e-08 Score=94.77 Aligned_cols=73 Identities=22% Similarity=0.443 Sum_probs=67.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
||+||+|+.||+++|+++++.+++.. .+|||++++..+.....++++.||++||.||++.++|..+++.+++.
T Consensus 46 ~dlvild~~l~~~~g~~~~~~ir~~~-~~pii~l~~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~ 118 (240)
T PRK10701 46 PDLVLLDIMLPGKDGMTICRDLRPKW-QGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 (240)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC-CCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 69999999999999999999999854 68999999988888888999999999999999999999999887754
No 53
>PRK14084 two-component response regulator; Provisional
Probab=98.75 E-value=4.2e-08 Score=96.29 Aligned_cols=72 Identities=17% Similarity=0.344 Sum_probs=64.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
||+|++|+.||+++|+++++.|++..+.++||++|+..+ ...++++.||.+||.||++.++|..+++++++.
T Consensus 47 ~dlv~lDi~m~~~~G~~~~~~i~~~~~~~~iI~~t~~~~--~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (246)
T PRK14084 47 YDIIFLDINLMDESGIELAAKIQKMKEPPAIIFATAHDQ--FAVKAFELNATDYILKPFEQKRIEQAVNKVRAT 118 (246)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEEecChH--HHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 699999999999999999999998877888999998754 567899999999999999999999999988654
No 54
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.74 E-value=9.7e-08 Score=110.39 Aligned_cols=74 Identities=22% Similarity=0.397 Sum_probs=68.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHh--CCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~--~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
||+||+|+.||++||+++++.||+. .+++|||++|+..+.....+|++.|+++||.||++.++|..++++++..
T Consensus 712 ~dlil~D~~mp~~~g~~~~~~lr~~~~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 787 (919)
T PRK11107 712 FDLILMDIQMPGMDGIRACELIRQLPHNQNTPIIAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKPG 787 (919)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHhcccCCCCCEEEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHccc
Confidence 7999999999999999999999974 5689999999999999999999999999999999999999999988654
No 55
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=98.74 E-value=1.6e-07 Score=107.81 Aligned_cols=73 Identities=23% Similarity=0.429 Sum_probs=64.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhC--CC-CcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEF--IH-LPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~--p~-IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
||+||+|+.||++||+++++.|++.. +. +|||++|+.... ...++++.|+++||.||++.++|..++++++..
T Consensus 570 ~Dlvl~D~~mp~~~G~e~~~~ir~~~~~~~~~~ii~~ta~~~~-~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 645 (779)
T PRK11091 570 YDLVLLDIQLPDMTGLDIARELRERYPREDLPPLVALTANVLK-DKKEYLDAGMDDVLSKPLSVPALTAMIKKFWDT 645 (779)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhccccCCCCcEEEEECCchH-hHHHHHHCCCCEEEECCCCHHHHHHHHHHHhcc
Confidence 79999999999999999999999865 45 489999987654 457889999999999999999999999988754
No 56
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=98.72 E-value=1.5e-07 Score=108.96 Aligned_cols=73 Identities=23% Similarity=0.417 Sum_probs=67.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHh----CCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEE----FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVT 73 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~----~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~ 73 (566)
||+||+|+.||++||++++++||+. .+.+|||++|+..+.....++++.|+++||.||++.++|..++++++.
T Consensus 735 ~dlil~D~~mp~~~G~~~~~~ir~~~~~~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 811 (921)
T PRK15347 735 FDLVLMDIRMPGLDGLETTQLWRDDPNNLDPDCMIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAAE 811 (921)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhchhhcCCCCcEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 7999999999999999999999863 367999999999999999999999999999999999999999988764
No 57
>PRK13856 two-component response regulator VirG; Provisional
Probab=98.72 E-value=6.5e-08 Score=94.50 Aligned_cols=73 Identities=23% Similarity=0.464 Sum_probs=65.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCC-ChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDD-RESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~-d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
||+||+|+.||+++|+++++.++.. ..+|||++|+.. +.....++++.||++||.||++.++|...++.+++.
T Consensus 46 ~dlvi~d~~l~~~~g~~l~~~i~~~-~~~pii~lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~ 119 (241)
T PRK13856 46 VDVVVVDLNLGREDGLEIVRSLATK-SDVPIIIISGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRV 119 (241)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc-CCCcEEEEECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhh
Confidence 6999999999999999999999875 479999999854 566677899999999999999999999999888764
No 58
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=98.70 E-value=4.5e-08 Score=113.67 Aligned_cols=75 Identities=15% Similarity=0.284 Sum_probs=70.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSK 75 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~ 75 (566)
|||||+|+.||++||++++++|++..+.+|||++|+........++++.|+++||.||++.++|..+|+++++..
T Consensus 727 ~Dlvl~D~~mp~~~G~~~~~~lr~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 801 (914)
T PRK11466 727 FAAALVDFDLPDYDGITLARQLAQQYPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQLQ 801 (914)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhhhc
Confidence 699999999999999999999999889999999999999999999999999999999999999999999987543
No 59
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=98.70 E-value=5.7e-08 Score=114.57 Aligned_cols=75 Identities=27% Similarity=0.449 Sum_probs=70.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSK 75 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~ 75 (566)
||+||+|+.||+|||+++++.||+..+.+|||++|+....+...++++.|+++||.||++.++|..++.++....
T Consensus 846 ~DlVl~D~~mP~mdG~el~~~ir~~~~~~pII~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~~ 920 (924)
T PRK10841 846 IDIVLTDVNMPNMDGYRLTQRLRQLGLTLPVIGVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAERV 920 (924)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHh
Confidence 799999999999999999999999888999999999999999999999999999999999999999998876543
No 60
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=98.67 E-value=2.8e-08 Score=102.34 Aligned_cols=71 Identities=27% Similarity=0.453 Sum_probs=64.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVT 73 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~ 73 (566)
||||++|+.||+|+|+||+++++...+.+|||++|++.. ...++...-+.|||.||+..+.|.++|.++.+
T Consensus 45 pDLifldI~mp~~ngiefaeQvr~i~~~v~iifIssh~e--ya~dsf~~n~~dYl~KPvt~ekLnraIdr~~k 115 (361)
T COG3947 45 PDLIFLDIVMPYMNGIEFAEQVRDIESAVPIIFISSHAE--YADDSFGMNLDDYLPKPVTPEKLNRAIDRRLK 115 (361)
T ss_pred CCEEEEEeecCCccHHHHHHHHHHhhccCcEEEEecchh--hhhhhcccchHhhccCCCCHHHHHHHHHHHhc
Confidence 799999999999999999999999999999999999865 44566677789999999999999999998864
No 61
>PRK15115 response regulator GlrR; Provisional
Probab=98.64 E-value=7.9e-08 Score=103.40 Aligned_cols=74 Identities=31% Similarity=0.519 Sum_probs=70.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
||+||+|+.||+++|+++++.+++..+.+|||++|+..+.....++++.||.+||.||++.++|..+|+.+++.
T Consensus 50 ~dlvilD~~lp~~~g~~ll~~l~~~~~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 123 (444)
T PRK15115 50 VDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALEQ 123 (444)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHHh
Confidence 69999999999999999999999988899999999999999999999999999999999999999999988764
No 62
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.64 E-value=9.7e-08 Score=102.81 Aligned_cols=74 Identities=31% Similarity=0.515 Sum_probs=69.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
||+||+|+.||+++|+++++.+++..+.+|||++|+..+.....++++.|+.+||.||++.++|...++.++..
T Consensus 49 ~dlillD~~~p~~~g~~ll~~i~~~~~~~pvI~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~~ 122 (457)
T PRK11361 49 PDVVLMDIRMPEMDGIKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQL 122 (457)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhccc
Confidence 69999999999999999999999888899999999999999999999999999999999999999999877643
No 63
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.64 E-value=1.2e-07 Score=102.77 Aligned_cols=74 Identities=28% Similarity=0.521 Sum_probs=69.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
||+||+|+.||+++|+++++.+++..+.+|||++|+..+......+++.|+.+||.||++.++|...|++++..
T Consensus 48 ~DlvllD~~lp~~dgl~~l~~ir~~~~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 121 (469)
T PRK10923 48 PDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 (469)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHhhCCCCeEEEEECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHHH
Confidence 69999999999999999999999988899999999999999999999999999999999999999999887653
No 64
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.63 E-value=7.2e-08 Score=103.22 Aligned_cols=74 Identities=31% Similarity=0.544 Sum_probs=69.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
||+||+|+.||+++|+++++.+++..+.+|||++|+..+...+.++++.|+.+||.||++.++|...+++++..
T Consensus 50 ~DlvilD~~m~~~~G~~~~~~ir~~~~~~~vi~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~~ 123 (441)
T PRK10365 50 FDLVLCDVRMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 (441)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEEEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHHH
Confidence 69999999999999999999999988899999999999999999999999999999999999999999887654
No 65
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.63 E-value=1.2e-07 Score=102.36 Aligned_cols=74 Identities=31% Similarity=0.506 Sum_probs=69.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
||+||+|+.||+++|+++++.+++..+.+|||++|+..+.....++++.|+++|+.||++.++|..+|++++..
T Consensus 43 ~DlVllD~~~p~~~g~~ll~~l~~~~~~~~vIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 116 (463)
T TIGR01818 43 PDLLITDVRMPGEDGLDLLPQIKKRHPQLPVIVMTAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALAH 116 (463)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHHH
Confidence 69999999999999999999999988899999999999999999999999999999999999999999887653
No 66
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=98.59 E-value=1.6e-07 Score=112.35 Aligned_cols=74 Identities=28% Similarity=0.504 Sum_probs=69.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
||+||+|+.||+++|+++++.|+...+.+|||++|+..+.....++++.|+++||.||++.++|..+|++++..
T Consensus 1003 ~dlil~D~~mp~~~g~~~~~~i~~~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 1076 (1197)
T PRK09959 1003 YDLLITDVNMPNMDGFELTRKLREQNSSLPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQV 1076 (1197)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhhc
Confidence 69999999999999999999999988899999999999999999999999999999999999999999877643
No 67
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=98.57 E-value=1.8e-07 Score=109.16 Aligned_cols=73 Identities=19% Similarity=0.360 Sum_probs=68.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCC---CcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIH---LPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVT 73 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~---IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~ 73 (566)
||+||+|+.||++||+++++.|+...+. +|||++|+........++++.|+++||.||++.++|..+|.+++.
T Consensus 747 ~dlvl~D~~mp~~~g~~~~~~ir~~~~~~~~~pii~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 822 (968)
T TIGR02956 747 FDLALLDINLPDGDGVTLLQQLRAIYGAKNEVKFIAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILA 822 (968)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHhCccccCCCeEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 7999999999999999999999986655 999999999999999999999999999999999999999998874
No 68
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=98.57 E-value=1e-07 Score=90.19 Aligned_cols=70 Identities=17% Similarity=0.323 Sum_probs=66.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQY 70 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~ 70 (566)
|..+++|+.|.+.+|+++++.|++..++..||++|++.....+..|++.||++||.||.+.+++..++.+
T Consensus 54 PayAvvDlkL~~gsGL~~i~~lr~~~~d~rivvLTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~ 123 (182)
T COG4567 54 PAYAVVDLKLGDGSGLAVIEALRERRADMRIVVLTGYASIATAVEAVKLGACDYLAKPADADDILAALLR 123 (182)
T ss_pred CceEEEEeeecCCCchHHHHHHHhcCCcceEEEEecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhh
Confidence 5678999999999999999999999999999999999999999999999999999999999999887754
No 69
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=98.55 E-value=2.8e-07 Score=89.65 Aligned_cols=71 Identities=25% Similarity=0.428 Sum_probs=60.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
||+||+|+.||+++|+++++.++.. ...+||++|+.. +.+.++++.||.+||.||++.++|..++.++.+.
T Consensus 48 ~dlv~lDi~~~~~~G~~~~~~l~~~-~~~~ii~vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (238)
T PRK11697 48 PDVVFLDIQMPRISGLELVGMLDPE-HMPYIVFVTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQE 118 (238)
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccc-CCCEEEEEeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 6999999999999999999998643 245688888875 4567899999999999999999999999988653
No 70
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=98.53 E-value=8.7e-07 Score=74.05 Aligned_cols=73 Identities=32% Similarity=0.542 Sum_probs=66.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhC--CCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEF--IHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVT 73 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~--p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~ 73 (566)
+|+|++|..+++++|+++++.+++.. +.+|+|+++...+.....++++.|+.+|+.||++.++|...++++++
T Consensus 51 ~di~l~d~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~ 125 (129)
T PRK10610 51 FGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFE 125 (129)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhCCCcCCCcEEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHH
Confidence 68999999999999999999998753 57899999988888888899999999999999999999999988764
No 71
>PRK09581 pleD response regulator PleD; Reviewed
Probab=98.49 E-value=5.9e-07 Score=94.52 Aligned_cols=74 Identities=26% Similarity=0.446 Sum_probs=67.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhC--CCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEF--IHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~--p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
||+||+|+.||+.+|+++++.++... +.+|||++|+..+.....++++.||++|+.||++.++|..+++.+++.
T Consensus 47 ~dlvi~d~~~~~~~g~~l~~~i~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~ 122 (457)
T PRK09581 47 PDIILLDVMMPGMDGFEVCRRLKSDPATTHIPVVMVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTRL 122 (457)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Confidence 69999999999999999999998743 479999999999999999999999999999999999999999887654
No 72
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=98.42 E-value=9.2e-07 Score=92.40 Aligned_cols=71 Identities=24% Similarity=0.389 Sum_probs=58.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCC--hHHHHHHHhcCCcEEEeCCC---------ChHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDR--ESVIMKSLASGAVFYMVKPV---------NPDALRNVWQ 69 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d--~~~~~~Al~aGA~dYL~KP~---------~~eeL~~aI~ 69 (566)
||+|++|+.||+++|++++++|+... .+|||++++..+ .....++++.|+.+||.||+ ..++|...|+
T Consensus 47 pDlVllD~~mp~~~G~e~l~~l~~~~-~~pvivvs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~ 125 (337)
T PRK12555 47 PDVILMDLEMPRMDGVEATRRIMAER-PCPILIVTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKID 125 (337)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHC-CCcEEEEeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHH
Confidence 79999999999999999999998865 589999998754 45677899999999999999 4455555555
Q ss_pred HHH
Q 040406 70 YAV 72 (566)
Q Consensus 70 ~vL 72 (566)
.+.
T Consensus 126 ~~~ 128 (337)
T PRK12555 126 QIG 128 (337)
T ss_pred HHh
Confidence 444
No 73
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=98.41 E-value=1.1e-06 Score=69.53 Aligned_cols=71 Identities=28% Similarity=0.528 Sum_probs=64.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYA 71 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~v 71 (566)
+|+||+|..+++.+++++++.+++..+.+|+|+++.........++++.|+.+|+.||++.++|...++++
T Consensus 42 ~~~ii~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 42 PDLILLDIMMPGMDGLELLRRIRKRGPDIPIIFLTAHGDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred CCEEEEecCCCCCchHHHHHHHHHhCCCCCEEEEEecccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 68999999999999999999999887789999999887778888899999999999999999998888653
No 74
>PRK13558 bacterio-opsin activator; Provisional
Probab=98.39 E-value=1.3e-06 Score=98.42 Aligned_cols=73 Identities=23% Similarity=0.337 Sum_probs=64.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChH--HHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPD--ALRNVWQYAVT 73 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~e--eL~~aI~~vL~ 73 (566)
|||||+|+.||+++|++++++|+...+.+|||++|+..+.....++++.|+.+|+.||.... .+..+++.++.
T Consensus 52 ~Dlvl~d~~lp~~~g~~~l~~l~~~~~~~piI~lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~~ 126 (665)
T PRK13558 52 IDCVVADHEPDGFDGLALLEAVRQTTAVPPVVVVPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAVP 126 (665)
T ss_pred CCEEEEeccCCCCcHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhhh
Confidence 69999999999999999999999988899999999999999999999999999999997543 56666665554
No 75
>PRK13435 response regulator; Provisional
Probab=98.34 E-value=2.2e-06 Score=77.24 Aligned_cols=72 Identities=18% Similarity=0.376 Sum_probs=61.0
Q ss_pred CcEEEEeCCCC-CCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhc
Q 040406 1 IDLVITDLHMP-EMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKK 76 (566)
Q Consensus 1 pDLVLlDi~MP-dmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~ 76 (566)
||+||+|+.++ +.+|+++++.+++. +.+|||+++...+. ..++..|+++|+.||++.++|...|++++..+.
T Consensus 51 ~dliivd~~~~~~~~~~~~~~~l~~~-~~~pii~ls~~~~~---~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~ 123 (145)
T PRK13435 51 PDVALVDVHLADGPTGVEVARRLSAD-GGVEVVFMTGNPER---VPHDFAGALGVIAKPYSPRGVARALSYLSARRV 123 (145)
T ss_pred CCEEEEeeecCCCCcHHHHHHHHHhC-CCCCEEEEeCCHHH---HHHHhcCcceeEeCCCCHHHHHHHHHHHHhcCc
Confidence 69999999998 58999999999764 58999999986442 467789999999999999999999998875443
No 76
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=98.31 E-value=2.5e-06 Score=89.66 Aligned_cols=59 Identities=31% Similarity=0.475 Sum_probs=52.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCC--hHHHHHHHhcCCcEEEeCCCC
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDR--ESVIMKSLASGAVFYMVKPVN 60 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d--~~~~~~Al~aGA~dYL~KP~~ 60 (566)
||+|++|+.||+++|++++++|++..+ +|||++|+... .....++++.|+++||.||+.
T Consensus 50 ~DlVllD~~mp~~dgle~l~~i~~~~~-~piIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~ 110 (354)
T PRK00742 50 PDVITLDVEMPVMDGLDALEKIMRLRP-TPVVMVSSLTERGAEITLRALELGAVDFVTKPFL 110 (354)
T ss_pred CCEEEEeCCCCCCChHHHHHHHHHhCC-CCEEEEecCCCCCHHHHHHHHhCCCcEEEeCCcc
Confidence 699999999999999999999998876 99999998643 456678999999999999994
No 77
>PRK09191 two-component response regulator; Provisional
Probab=98.19 E-value=7.5e-06 Score=80.80 Aligned_cols=71 Identities=18% Similarity=0.427 Sum_probs=60.2
Q ss_pred CcEEEEeCCCCC-CCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPE-MNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPd-mDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
||+||+|+.||+ ++|+++++.++... .+|||++|+..+.... +...++.+|+.||++.++|..+|++++..
T Consensus 183 ~dlvi~d~~~~~~~~g~e~l~~l~~~~-~~pii~ls~~~~~~~~--~~~~~~~~~l~kP~~~~~l~~~i~~~~~~ 254 (261)
T PRK09191 183 PGLILADIQLADGSSGIDAVNDILKTF-DVPVIFITAFPERLLT--GERPEPAFLITKPFQPDTVKAAISQALFF 254 (261)
T ss_pred CCEEEEecCCCCCCCHHHHHHHHHHhC-CCCEEEEeCCCcHHHH--HHhcccCceEECCCCHHHHHHHHHHHHhc
Confidence 699999999995 89999999999877 8999999997765433 33467889999999999999999887643
No 78
>PRK13557 histidine kinase; Provisional
Probab=98.02 E-value=1.6e-05 Score=85.64 Aligned_cols=73 Identities=23% Similarity=0.330 Sum_probs=67.3
Q ss_pred CcEEEEeCCCCC-CCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 040406 1 IDLVITDLHMPE-MNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVT 73 (566)
Q Consensus 1 pDLVLlDi~MPd-mDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~ 73 (566)
||+||+|..|++ ++|+++++.|+...+.+|||+++...+......++..|+.+|+.||++.++|..+++.++.
T Consensus 461 ~d~vi~d~~~~~~~~~~~~~~~l~~~~~~~~ii~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 534 (540)
T PRK13557 461 VDLLFTDLIMPGGMNGVMLAREARRRQPKIKVLLTTGYAEASIERTDAGGSEFDILNKPYRRAELARRVRMVLD 534 (540)
T ss_pred ceEEEEeccCCCCCCHHHHHHHHHHhCCCCcEEEEcCCCchhhhhhhccccCCceeeCCCCHHHHHHHHHHHhc
Confidence 699999999997 9999999999998889999999999888888888899999999999999999999987764
No 79
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=97.97 E-value=2.2e-05 Score=91.60 Aligned_cols=71 Identities=17% Similarity=0.231 Sum_probs=66.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
||+||+ .||+++|+++++.|+...+.+|||++|+........+++..| ++||.||++.++|..+|+++++.
T Consensus 744 ~DlVll--~~~~~~g~~l~~~l~~~~~~ipIIvls~~~~~~~~~~~~~~G-~d~L~KP~~~~~L~~~l~~~l~~ 814 (828)
T PRK13837 744 FDLVLV--DDRLLDEEQAAAALHAAAPTLPIILGGNSKTMALSPDLLASV-AEILAKPISSRTLAYALRTALAT 814 (828)
T ss_pred ceEEEE--CCCCCCHHHHHHHHHhhCCCCCEEEEeCCCchhhhhhHhhcc-CcEEeCCCCHHHHHHHHHHHHcc
Confidence 589999 799999999999999988999999999999888888999999 99999999999999999988754
No 80
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.94 E-value=1.5e-05 Score=84.70 Aligned_cols=59 Identities=34% Similarity=0.530 Sum_probs=52.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCC--hHHHHHHHhcCCcEEEeCCCC
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDR--ESVIMKSLASGAVFYMVKPVN 60 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d--~~~~~~Al~aGA~dYL~KP~~ 60 (566)
||+|++|+.||.|||+++++.|... ..+||||+++... .+...+|++.||.||+.||..
T Consensus 48 PDVi~ld~emp~mdgl~~l~~im~~-~p~pVimvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 48 PDVITLDVEMPVMDGLEALRKIMRL-RPLPVIMVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred CCEEEEecccccccHHHHHHHHhcC-CCCcEEEEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 7999999999999999999999888 5899999998654 466789999999999999974
No 81
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=97.80 E-value=3.5e-05 Score=78.05 Aligned_cols=71 Identities=24% Similarity=0.440 Sum_probs=63.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVT 73 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~ 73 (566)
+|++++|+.||+++|+++.+.|+...+..+|+++|++++ .+..+.+..|.|||.||+..+.|...+.+..+
T Consensus 48 ~~~~fldI~~~~~~G~ela~~i~~~~~~~~Ivfvt~~~~--~a~~afev~a~d~i~kp~~~~~l~~~l~~~~~ 118 (244)
T COG3279 48 PDLVFLDIAMPDINGIELAARIRKGDPRPAIVFVTAHDE--YAVAAFEVEALDYLLKPISEERLAKTLERLRR 118 (244)
T ss_pred CCeEEEeeccCccchHHHHHHhcccCCCCeEEEEEehHH--HHHHHHhHHHHhhhcCcchHHHHHHHHHHHHH
Confidence 689999999999999999999998877889999999864 45567788999999999999999999987654
No 82
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=97.11 E-value=0.00046 Score=75.59 Aligned_cols=71 Identities=28% Similarity=0.390 Sum_probs=62.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVT 73 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~ 73 (566)
||++|+|+.||++||++++++++.... .|+++|...+.....+.+++|++++|+||.....+........+
T Consensus 33 ~~~~lld~~m~~~~~~~~~~~lk~~~~--~~v~~t~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~~l~~ 103 (435)
T COG3706 33 PDYKLLDVMMPGMDGFELCRRLKAEPA--TVVMVTALDDSAPRVRGLKAGADDFLTKPVNDSQLFLRAKSLVR 103 (435)
T ss_pred CCeEEeecccCCcCchhHHHHHhcCCc--ceEEEEecCCCCcchhHHhhhhhhhccCCCChHHHHHhhhhhcc
Confidence 689999999999999999999987542 28999999988888999999999999999998888777766543
No 83
>PRK15029 arginine decarboxylase; Provisional
Probab=96.79 E-value=0.0033 Score=73.39 Aligned_cols=70 Identities=11% Similarity=0.108 Sum_probs=51.1
Q ss_pred CcEEEEeCCCCCCCHH----HHHHHHHHhCCCCcEEEEecCCC--hHHHHHHHhcCCcEEEeCCCChHH-HHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGL----ELQKEINEEFIHLPVMVMSSDDR--ESVIMKSLASGAVFYMVKPVNPDA-LRNVWQYA 71 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~----eLLe~Lr~~~p~IPVIvLSa~~d--~~~~~~Al~aGA~dYL~KP~~~ee-L~~aI~~v 71 (566)
||+||+|++||+++|+ +++++||+..+++|||++|+..+ ....... -.-+.+|+.+-.+-.+ +...|...
T Consensus 54 ~DlVLLD~~LPd~dG~~~~~ell~~IR~~~~~iPIIlLTar~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (755)
T PRK15029 54 IDCLMFSYQMEHPDEHQNVRQLIGKLHERQQNVPVFLLGDREKALAAMDRDL-LELVDEFAWILEDTADFIAGRAVAA 130 (755)
T ss_pred CcEEEEECCCCCCccchhHHHHHHHHHhhCCCCCEEEEEcCCcccccCCHHH-HHhhheEEEecCCCHHHHHHHHHHH
Confidence 6999999999999997 89999998888999999999986 3333232 2346778888654433 33334444
No 84
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]
Probab=95.70 E-value=0.0085 Score=63.75 Aligned_cols=56 Identities=30% Similarity=0.421 Sum_probs=49.7
Q ss_pred cccchhhhhhhhchhhhhHHHHHHHHhcccchhHHHHHHhcCCCC-CCHHHHHHHHHHHHHHHHHhhhhc
Q 040406 135 NAAAPKKAKVVWTNSLHNRFLQAIRHITLEKAVPKKILEFMNVPG-LTRENVASHLQKYRIFLKRVADDG 203 (566)
Q Consensus 135 ~~~s~KKarL~WTsELHeKFLaAIgKLGlEKAIPKrILElMnvpG-LTrEEVaSHLQKyrl~lkrl~~~~ 203 (566)
.....+...+.|...|| +|+|++ ||..|| +||| ||.+| +..+|+|+.++.+++..-
T Consensus 168 gl~~~~i~~l~~aalLH-----DIGKi~----ip~~IL---~K~g~Lt~eE-~~~ik~H~~~g~~iL~~~ 224 (344)
T COG2206 168 GLSEEKIEELALAGLLH-----DIGKIG----IPDSIL---NKPGKLTEEE-FEIIKKHPIYGYDILKDL 224 (344)
T ss_pred CCCHHHHHHHHHHHHHh-----hccccc----CCHHHh---CCCCCCCHHH-HHHHHhchHHHHHHHHhc
Confidence 34556667899999999 999999 999999 9999 99999 999999999999998765
No 85
>PRK15201 fimbriae regulatory protein FimW; Provisional
Probab=94.72 E-value=0.05 Score=53.44 Aligned_cols=91 Identities=9% Similarity=0.049 Sum_probs=64.9
Q ss_pred cEEEeCCCChHHHHHHHHHHHHhhcCCCcchhhhhh--hccCCchHHHHHHhhhccCCchhHHHHhhhcccccccccccc
Q 040406 52 VFYMVKPVNPDALRNVWQYAVTSKKGKSIFTEEKSS--LANGSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKD 129 (566)
Q Consensus 52 ~dYL~KP~~~eeL~~aI~~vL~~~~~~~~l~~e~~~--l~~~lS~re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~ 129 (566)
.-||.+.-+++++....--++..+...+.++..... ....++++|.+++..+++|.++.||++...++.++++.++..
T Consensus 92 ~~~iyr~d~v~~i~~k~~~il~~~al~~~~~~~~~~~~~~~~LSpRErEVLrLLAqGkTnKEIAe~L~IS~rTVkth~sr 171 (198)
T PRK15201 92 LPHIYREDDVEEITRKMILILHKRALRHSVPSGICHYCTTRHFSVTERHLLKLIASGYHLSETAALLSLSEEQTKSLRRS 171 (198)
T ss_pred cchhhccccHHHHHHHHHHHHHHHHHHhhCCchhccccCCCCCCHHHHHHHHHHHCCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 345555666676666555555443332223222211 224499999999999999999999999999999999999999
Q ss_pred ccccccccchhhh
Q 040406 130 ELEGENAAAPKKA 142 (566)
Q Consensus 130 ~lekl~~~s~KKa 142 (566)
...++.+..+.+.
T Consensus 172 ImkKLgV~SRaEL 184 (198)
T PRK15201 172 IMRKLHVKTEQQF 184 (198)
T ss_pred HHHHhCCCCHHHH
Confidence 9998887665543
No 86
>PRK15320 transcriptional activator SprB; Provisional
Probab=94.69 E-value=0.043 Score=54.79 Aligned_cols=120 Identities=18% Similarity=0.116 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHH-------------HHHHhhcCCCc-
Q 040406 15 GLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQ-------------YAVTSKKGKSI- 80 (566)
Q Consensus 15 G~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~-------------~vL~~~~~~~~- 80 (566)
-+=+...++...++-||++++.+--..+..-..-.|+.+|+.| +||..+|+ +...+...+..
T Consensus 60 h~~lf~~l~~~l~~~~v~vv~d~l~~~dr~vl~~~g~~~~~l~----~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (251)
T PRK15320 60 HVYLFHALLTRLQNRKVLVVADRLYYIDRCVLQYFGVMDYVLK----DELSCAIRSEREKLRLPEAWLRFCHRPQKKTVA 135 (251)
T ss_pred HHHHHHHHHHHcCCCceEEEecceeehhhhhhhhhcchhHHHH----HHHHHHhcccccccCCcHHHHHHhcCccccccc
Confidence 3446677788888999999987643322222223688888876 45544443 22211111100
Q ss_pred ---------chhhhh---------hhccCCchHHHHHHhhhccCCchhHHHHhhhccccccccccccccccccccc
Q 040406 81 ---------FTEEKS---------SLANGSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENAAA 138 (566)
Q Consensus 81 ---------l~~e~~---------~l~~~lS~re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~~lekl~~~s 138 (566)
.+++.. .+...++.+|++++..+++|.++.||++...++.++++++.....++..+..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSdREIEVL~LLAkG~SNKEIAekL~LS~KTVSTYKnRLLeKLgAkN 211 (251)
T PRK15320 136 ATYAFNAGETPEEVLFNINQYAWWNLPPGVTQAKYALLILLSSGHPAIELAKKFGLGTKTVSIYRKKVMYRLGMDS 211 (251)
T ss_pred eeeeccCCCChHHHhhhccceeeecCCCCCCHHHHHHHHHHHcCCCHHHHHHHhccchhhHHHHHHHHHHHcCCCC
Confidence 011111 1235689999999999999999999999999999888887766655554433
No 87
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=94.61 E-value=0.12 Score=60.50 Aligned_cols=72 Identities=13% Similarity=0.081 Sum_probs=58.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHh--CCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAV 72 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~--~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL 72 (566)
||++|+|+.||++++.+.+...... ....++|+++...+......+.+.|+++|+.||+...+|...+....
T Consensus 577 ~d~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 650 (919)
T PRK11107 577 YDILLLGLPVTFREPLTMLHERLAKAKSMTDFLILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEPC 650 (919)
T ss_pred CCEEEecccCCCCCCHHHHHHHHHhhhhcCCcEEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHhh
Confidence 6899999999998877665554432 23456888888888888889999999999999999999998887654
No 88
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=89.40 E-value=0.63 Score=48.68 Aligned_cols=44 Identities=16% Similarity=0.089 Sum_probs=36.1
Q ss_pred CcEEEEec-CCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHH
Q 040406 29 LPVMVMSS-DDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAV 72 (566)
Q Consensus 29 IPVIvLSa-~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL 72 (566)
..||++.. ..+.+..+.|++.||.+||.+|++.++|.+++.++.
T Consensus 42 ~~vv~v~~~~~~~~~~~~a~~~Ga~~~l~~P~~~~~l~~~l~~~~ 86 (322)
T TIGR03815 42 RRVVLVGGGEPGGALWRAAAAVGAEHVAVLPEAEGWLVELLADLD 86 (322)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhChhheeeCCCCHHHHHHHHHhhc
Confidence 34554544 557888999999999999999999999999998763
No 89
>PRK13719 conjugal transfer transcriptional regulator TraJ; Provisional
Probab=88.56 E-value=0.48 Score=47.89 Aligned_cols=54 Identities=7% Similarity=-0.117 Sum_probs=48.2
Q ss_pred hccCCchHHHHHHhhhccCCchhHHHHhhhccccccccccccccccccccchhh
Q 040406 88 LANGSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENAAAPKK 141 (566)
Q Consensus 88 l~~~lS~re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~~lekl~~~s~KK 141 (566)
....++++|.+++..+++|.++.+|++...++.++++.++.....+..+..+.+
T Consensus 140 ~~~~LS~RE~eVL~Lia~G~SnkEIA~~L~IS~~TVk~hvs~I~~KLgv~sR~e 193 (217)
T PRK13719 140 AKNKVTKYQNDVFILYSFGFSHEYIAQLLNITVGSSKNKISEILKFFGISSRDE 193 (217)
T ss_pred ccCCCCHHHHHHHHHHHCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCHHH
Confidence 445699999999999999999999999999999999999999998887766544
No 90
>PRK10188 DNA-binding transcriptional activator SdiA; Provisional
Probab=86.65 E-value=0.63 Score=47.17 Aligned_cols=53 Identities=15% Similarity=0.030 Sum_probs=47.3
Q ss_pred cCCchHHHHHHhhhccCCchhHHHHhhhccccccccccccccccccccchhhh
Q 040406 90 NGSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENAAAPKKA 142 (566)
Q Consensus 90 ~~lS~re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~~lekl~~~s~KKa 142 (566)
..++.||.++|..+++|++..||++...++.+++..+.+....|+.+..+..+
T Consensus 178 ~~LT~rE~evl~~~a~G~t~~eIa~~l~is~~TV~~h~~~~~~KL~~~nr~q~ 230 (240)
T PRK10188 178 MNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKFNAPNKTQI 230 (240)
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCHHHH
Confidence 46999999999999999999999999999999999999998888877765443
No 91
>PRK13870 transcriptional regulator TraR; Provisional
Probab=84.63 E-value=0.6 Score=47.18 Aligned_cols=53 Identities=9% Similarity=0.114 Sum_probs=48.0
Q ss_pred cCCchHHHHHHhhhccCCchhHHHHhhhccccccccccccccccccccchhhh
Q 040406 90 NGSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENAAAPKKA 142 (566)
Q Consensus 90 ~~lS~re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~~lekl~~~s~KKa 142 (566)
..++.||+++|.-++.|++..||+....++++++..|.+....|+.+..+..+
T Consensus 172 ~~LT~RE~E~L~W~A~GKT~~EIa~ILgISe~TV~~Hl~na~~KLga~nr~qA 224 (234)
T PRK13870 172 AWLDPKEATYLRWIAVGKTMEEIADVEGVKYNSVRVKLREAMKRFDVRSKAHL 224 (234)
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHcCCCCHHHH
Confidence 35999999999999999999999999999999999999999888887776544
No 92
>PF00196 GerE: Bacterial regulatory proteins, luxR family; InterPro: IPR000792 This domain is a DNA-binding, helix-turn-helix (HTH) domain of about 65 amino acids, present in transcription regulators of the LuxR/FixJ family of response regulators. The domain is named after Vibrio fischeri luxR, a transcriptional activator for quorum-sensing control of luminescence. LuxR-type HTH domain proteins occur in a variety of organisms. The DNA-binding HTH domain is usually located in the C-terminal region; the N-terminal region often containing an autoinducer-binding domain or a response regulatory domain. Most luxR-type regulators act as transcription activators, but some can be repressors or have a dual role for different sites. LuxR-type HTH regulators control a wide variety of activities in various biological processes. The luxR-type, DNA-binding HTH domain forms a four-helical bundle structure. The HTH motif comprises the second and third helices, known as the scaffold and recognition helix, respectively. The HTH binds DNA in the major groove, where the N-terminal part of the recognition helix makes most of the DNA contacts. The fourth helix is involved in dimerisation of gerE and traR. Signalling events by one of the four activation mechanisms described below lead to multimerisation of the regulator. The regulators bind DNA as multimers [, , ]. LuxR-type HTH proteins can be activated by one of four different mechanisms: 1) Regulators which belong to a two-component sensory transduction system where the protein is activated by its phosphorylation, generally on an aspartate residue, by a transmembrane kinase [, ]. Some proteins that belong to this category are: Rhizobiaceae fixJ (global regulator inducing expression of nitrogen-fixation genes in microaerobiosis) Escherichia coli and Salmonella typhimurium uhpA (activates hexose phosphate transport gene uhpT) E. coli narL and narP (activate nitrate reductase operon) Enterobacteria rcsB (regulation of exopolysaccharide biosynthesis in enteric and plant pathogenesis) Bordetella pertussis bvgA (virulence factor) Bacillus subtilis coma (involved in expression of late-expressing competence genes) 2) Regulators which are activated, or in very rare cases repressed, when bound to N-acyl homoserine lactones, which are used as quorum sensing molecules in a variety of Gram-negative bacteria []: V. fischeri luxR (activates bioluminescence operon) Agrobacterium tumefaciens traR (regulation of Ti plasmid transfer) Erwinia carotovora carR (control of carbapenem antibiotics biosynthesis) E. carotovora expR (virulence factor for soft rot disease; activates plant tissue macerating enzyme genes) Pseudomonas aeruginosa lasR (activates elastase gene lasB) Erwinia chrysanthemi echR and Erwinia stewartii esaR Pseudomonas chlororaphis phzR (positive regulator of phenazine antibiotic production) Pseudomonas aeruginosa rhlR (activates rhlAB operon and lasB gene) 3) Autonomous effector domain regulators, without a regulatory domain, represented by gerE []. B. subtilis gerE (transcription activator and repressor for the regulation of spore formation) 4) Multiple ligand-binding regulators, exemplified by malT []. E. coli malT (activates maltose operon; MalT binds ATP and maltotriose); GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3SZT_A 3CLO_A 1H0M_A 1L3L_A 3C57_B 1ZLK_B 1ZLJ_H 3C3W_B 1RNL_A 1ZG1_A ....
Probab=83.84 E-value=0.71 Score=36.34 Aligned_cols=49 Identities=14% Similarity=0.139 Sum_probs=40.3
Q ss_pred cCCchHHHHHHhhhccCCchhHHHHhhhccccccccccccccccccccc
Q 040406 90 NGSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENAAA 138 (566)
Q Consensus 90 ~~lS~re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~~lekl~~~s 138 (566)
..++++|.+++..+..|.+..+|+....++..++..+.+....+..+..
T Consensus 2 ~~LT~~E~~vl~~l~~G~~~~eIA~~l~is~~tV~~~~~~i~~Kl~~~~ 50 (58)
T PF00196_consen 2 PSLTERELEVLRLLAQGMSNKEIAEELGISEKTVKSHRRRIMKKLGVKN 50 (58)
T ss_dssp GSS-HHHHHHHHHHHTTS-HHHHHHHHTSHHHHHHHHHHHHHHHHT-SS
T ss_pred CccCHHHHHHHHHHHhcCCcchhHHhcCcchhhHHHHHHHHHHHhCCCC
Confidence 4588999999999999999999999999999999988887776665554
No 93
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=83.49 E-value=2.3 Score=32.25 Aligned_cols=47 Identities=26% Similarity=0.304 Sum_probs=37.3
Q ss_pred hhhchhhhhHHHHHHHHhcccchhHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 040406 144 VVWTNSLHNRFLQAIRHITLEKAVPKKILEFMNVPGLTRENVASHLQKYR 193 (566)
Q Consensus 144 L~WTsELHeKFLaAIgKLGlEKAIPKrILElMnvpGLTrEEVaSHLQKyr 193 (566)
-.||.+-+..|+.+|.+.|.+ --++|.+.|. .+-|..++.+|.++|+
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~--~W~~Ia~~~~-~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKD--NWKKIAKRMP-GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTT--HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCc--HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence 469999999999999999944 2466777766 5789999999999874
No 94
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=80.94 E-value=12 Score=36.09 Aligned_cols=55 Identities=24% Similarity=0.227 Sum_probs=41.4
Q ss_pred CcEEEEeCCCCCC--------CHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEe
Q 040406 1 IDLVITDLHMPEM--------NGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV 56 (566)
Q Consensus 1 pDLVLlDi~MPdm--------DG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~ 56 (566)
+|+|.+.-..|.. .|++.++++++..+++||++..+- +.+.+.++++.||+++..
T Consensus 125 aD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~ 187 (212)
T PRK00043 125 ADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVLEAGADGVAV 187 (212)
T ss_pred CCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEEEE
Confidence 3677765444432 358999999887766999888776 567788999999999775
No 95
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=80.45 E-value=5.6 Score=41.11 Aligned_cols=58 Identities=19% Similarity=0.295 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHhCCCCcEEEEecCC------ChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 040406 14 NGLELQKEINEEFIHLPVMVMSSDD------RESVIMKSLASGAVFYMVKPVNPDALRNVWQYA 71 (566)
Q Consensus 14 DG~eLLe~Lr~~~p~IPVIvLSa~~------d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~v 71 (566)
+.+++++++|+..+++|+|+||-.. -.....+|.++|+++.|.-.+..++....+..+
T Consensus 75 ~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~ 138 (258)
T PRK13111 75 DVFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAA 138 (258)
T ss_pred HHHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHH
Confidence 3477788888666789999999654 345688899999999999888888887776655
No 96
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=79.36 E-value=10 Score=34.25 Aligned_cols=69 Identities=7% Similarity=-0.183 Sum_probs=47.6
Q ss_pred CcEEEEeCCCCCC--CHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHH
Q 040406 1 IDLVITDLHMPEM--NGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQ 69 (566)
Q Consensus 1 pDLVLlDi~MPdm--DG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~ 69 (566)
||+|.+-..+... .--+++++|++..+.-..|++.+....+...++.++|+++|+..--+.++....++
T Consensus 51 ~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 51 VDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKIR 121 (122)
T ss_pred CCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHh
Confidence 5777777666532 22456777777655445566666556666778889999999999888888776654
No 97
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=78.64 E-value=7.7 Score=39.94 Aligned_cols=58 Identities=16% Similarity=0.198 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHhCCCCcEEEEecCCC------hHHHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 040406 14 NGLELQKEINEEFIHLPVMVMSSDDR------ESVIMKSLASGAVFYMVKPVNPDALRNVWQYA 71 (566)
Q Consensus 14 DG~eLLe~Lr~~~p~IPVIvLSa~~d------~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~v 71 (566)
+.+++++.+|+...++|+++|+-... ...+.++.++|+++.+.-....++....+..+
T Consensus 73 ~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~ 136 (256)
T TIGR00262 73 KCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAA 136 (256)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHH
Confidence 34667788877656899888888766 67788999999999999888888877666554
No 98
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=78.40 E-value=1.5 Score=52.08 Aligned_cols=53 Identities=17% Similarity=0.037 Sum_probs=48.5
Q ss_pred CCchHHHHHHhhhccCCchhHHHHhhhccccccccccccccccccccchhhhh
Q 040406 91 GSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENAAAPKKAK 143 (566)
Q Consensus 91 ~lS~re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~~lekl~~~s~KKar 143 (566)
.++.||.+|+..|.+|.|+.||++...++-.|++.|.++...|+.+..++++.
T Consensus 831 ~Ls~RE~eVL~Lia~G~SN~eIa~~L~isl~TVKtH~rniy~KLgV~~RtqAV 883 (894)
T COG2909 831 PLSQRELEVLGLIAQGLSNEEIAQELFISLTTVKTHIRNIYQKLGVANRTQAV 883 (894)
T ss_pred CccHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHH
Confidence 48999999999999999999999999999999999999999998887766553
No 99
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=76.95 E-value=10 Score=38.57 Aligned_cols=58 Identities=21% Similarity=0.320 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHhCCCCcEEEEecCCC------hHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHH
Q 040406 14 NGLELQKEINEEFIHLPVMVMSSDDR------ESVIMKSLASGAVFYMVKPVNPDALRNVWQYAV 72 (566)
Q Consensus 14 DG~eLLe~Lr~~~p~IPVIvLSa~~d------~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL 72 (566)
.++++++++|+.. ++|+++|+-... ...+.++.++|+++.+.-.+..+++...++.+.
T Consensus 63 ~~~~~~~~vr~~~-~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~ 126 (242)
T cd04724 63 DVLELVKEIRKKN-TIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAK 126 (242)
T ss_pred HHHHHHHHHhhcC-CCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHH
Confidence 3566777777665 789999888654 667888999999999997667777766665543
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=75.74 E-value=1.7 Score=51.02 Aligned_cols=53 Identities=13% Similarity=0.012 Sum_probs=48.1
Q ss_pred cCCchHHHHHHhhhccCCchhHHHHhhhccccccccccccccccccccchhhh
Q 040406 90 NGSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENAAAPKKA 142 (566)
Q Consensus 90 ~~lS~re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~~lekl~~~s~KKa 142 (566)
..++.+|.++++.+.+|.+++||+....++..|++.|.+..+.|+.+..+.+.
T Consensus 837 ~~lt~~e~~v~~~~~~g~~~~~ia~~l~~s~~tv~~h~~~~~~kl~v~~r~~~ 889 (903)
T PRK04841 837 SPLTQREWQVLGLIYSGYSNEQIAGELDVAATTIKTHIRNLYQKLGIAHRQEA 889 (903)
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCHHHH
Confidence 45999999999999999999999999999999999999999999887775443
No 101
>COG2771 CsgD DNA-binding HTH domain-containing proteins [Transcription]
Probab=75.24 E-value=2.3 Score=33.16 Aligned_cols=49 Identities=10% Similarity=0.017 Sum_probs=43.0
Q ss_pred CCchHHHHHHhhhccCCchhHHHHhhhccccccccccccccccccccch
Q 040406 91 GSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENAAAP 139 (566)
Q Consensus 91 ~lS~re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~~lekl~~~s~ 139 (566)
.++.+|.+++..+.+|.+..+++....++..++..+......+.....+
T Consensus 4 ~Lt~rE~~v~~l~~~G~s~~eia~~l~is~~tV~~h~~~i~~Kl~~~~r 52 (65)
T COG2771 4 DLTPREREILRLVAQGKSNKEIARILGISEETVKTHLRNIYRKLGVKNR 52 (65)
T ss_pred cCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCH
Confidence 5789999999999999999999999999999999998887777665553
No 102
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=73.72 E-value=9.4 Score=34.19 Aligned_cols=53 Identities=23% Similarity=0.292 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 040406 14 NGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYA 71 (566)
Q Consensus 14 DG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~v 71 (566)
...++++.+.+..+.+|||++......... ..+.+-|..|++..+|.++++++
T Consensus 55 ~~~~~l~~l~~~~~~~Pvlllg~~~~~~~~-----~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 55 KLAELLKELLKWAPHIPVLLLGEHDSPEEL-----PNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred hHHHHHHHHHhhCCCCCEEEECCCCccccc-----cCeeEecCCCCCHHHHHHHHHHh
Confidence 456788888899999999999988765111 22777899999999999999865
No 103
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=73.52 E-value=18 Score=37.13 Aligned_cols=71 Identities=10% Similarity=0.005 Sum_probs=53.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHh-CCCCcEEEEecCCChHHHHHHHhcCCcEEE-eCCCChHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEE-FIHLPVMVMSSDDRESVIMKSLASGAVFYM-VKPVNPDALRNVWQYA 71 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~-~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL-~KP~~~eeL~~aI~~v 71 (566)
+|.|++|++-...|--++...|+.. ...+.+++=....+...+.++++.||++.+ +|--+.++++++++.+
T Consensus 34 ~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~~~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~ 106 (249)
T TIGR02311 34 FDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGDPVLIKQLLDIGAQTLLVPMIETAEQAEAAVAAT 106 (249)
T ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCCHHHHHHHhCCCCCEEEecCcCCHHHHHHHHHHc
Confidence 6999999998888888888777653 224455555555667788999999999855 4556788888877755
No 104
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=72.64 E-value=20 Score=36.82 Aligned_cols=71 Identities=10% Similarity=0.039 Sum_probs=54.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHh-CCCCcEEEEecCCChHHHHHHHhcCCcEEEeCC-CChHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEE-FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKP-VNPDALRNVWQYA 71 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~-~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP-~~~eeL~~aI~~v 71 (566)
+|.|++|++...+|--++...++.. ...++.|+=....+...+.++++.||.+.+.-= -+.++.+++++.+
T Consensus 34 ~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~ 106 (249)
T TIGR03239 34 FDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNEPVIIKRLLDIGFYNFLIPFVESAEEAERAVAAT 106 (249)
T ss_pred CCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHc
Confidence 6999999999988887777777653 234566666677788899999999999987753 3577777777644
No 105
>PLN02591 tryptophan synthase
Probab=72.02 E-value=13 Score=38.36 Aligned_cols=58 Identities=10% Similarity=0.189 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHhCCCCcEEEEecCCC------hHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHH
Q 040406 14 NGLELQKEINEEFIHLPVMVMSSDDR------ESVIMKSLASGAVFYMVKPVNPDALRNVWQYAV 72 (566)
Q Consensus 14 DG~eLLe~Lr~~~p~IPVIvLSa~~d------~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL 72 (566)
+.+++++++|+. .++|+|+||-... .....+|.++|+++.|.-.+..++....+..+.
T Consensus 65 ~~~~~~~~~r~~-~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~ 128 (250)
T PLN02591 65 SVISMLKEVAPQ-LSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAA 128 (250)
T ss_pred HHHHHHHHHhcC-CCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 357778888754 5899999998654 355788999999999999999888887776553
No 106
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=71.93 E-value=5.2 Score=36.02 Aligned_cols=71 Identities=14% Similarity=0.142 Sum_probs=48.3
Q ss_pred cEEEEeCCCCC--CCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCC-ChHHHHHHHHHHHH
Q 040406 2 DLVITDLHMPE--MNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPV-NPDALRNVWQYAVT 73 (566)
Q Consensus 2 DLVLlDi~MPd--mDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~-~~eeL~~aI~~vL~ 73 (566)
+.|++|+. +. ....++++.|+.....+||.+++.....+.+-..+-..+++|+.... +.+.+...|..+.+
T Consensus 40 ~avvi~~d-~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~~~~~l~~~~l~~v~~~i~l~~~t~~fia~rI~~Aa~ 113 (115)
T PF03709_consen 40 AAVVISWD-GEEEDEAQELLDKIRERNFGIPVFLLAERDTTEDLPAEVLGEVDGFIWLFEDTAEFIARRIEAAAR 113 (115)
T ss_dssp EEEEEECH-HHHHHHHHHHHHHHHHHSTT-EEEEEESCCHHHCCCHHHHCCESEEEETTTTTHHHHHHHHHHHHH
T ss_pred eEEEEEcc-cccchhHHHHHHHHHHhCCCCCEEEEecCCCcccCCHHHHhhccEEEEecCCCHHHHHHHHHHHHH
Confidence 46777775 21 23468999999999999999999976544444445566888888864 45556666666554
No 107
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=71.67 E-value=22 Score=37.09 Aligned_cols=71 Identities=14% Similarity=0.140 Sum_probs=53.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHh-CCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCC-ChHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEE-FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPV-NPDALRNVWQYA 71 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~-~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~-~~eeL~~aI~~v 71 (566)
||.|++|++....|--++...++.. ...++.++-....+...+.++++.||.+.+.-=+ +.++.+.+++.+
T Consensus 40 fD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~ 112 (267)
T PRK10128 40 YDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSAT 112 (267)
T ss_pred CCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCCHHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhc
Confidence 6999999999888877777777643 2345556666677888899999999999888654 567777766654
No 108
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=71.50 E-value=22 Score=36.71 Aligned_cols=71 Identities=10% Similarity=0.049 Sum_probs=53.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHh-CCCCcEEEEecCCChHHHHHHHhcCCcEEEeCC-CChHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEE-FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKP-VNPDALRNVWQYA 71 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~-~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP-~~~eeL~~aI~~v 71 (566)
+|.|++|++....|--++...++.. ...++.|+=....+...+.++++.||.+++.-= -+.++.+++++..
T Consensus 41 ~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~ 113 (256)
T PRK10558 41 FDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETAEEARRAVAST 113 (256)
T ss_pred CCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHc
Confidence 6999999999988887777777643 234566666666788899999999999987753 3567777777654
No 109
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=71.05 E-value=10 Score=40.62 Aligned_cols=54 Identities=9% Similarity=0.067 Sum_probs=42.4
Q ss_pred CcEEEEeCCCCCCC-HHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEE
Q 040406 1 IDLVITDLHMPEMN-GLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYM 55 (566)
Q Consensus 1 pDLVLlDi~MPdmD-G~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL 55 (566)
+|+|.+|+-.+... -.+++++||+.+|++|||+=. ..+.+.+..++++||+..+
T Consensus 112 ~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~-V~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 112 PEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGN-VGTPEAVRELENAGADATK 166 (326)
T ss_pred CCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEe-cCCHHHHHHHHHcCcCEEE
Confidence 48999999987644 467899999999888877632 2367788899999999865
No 110
>TIGR03020 EpsA transcriptional regulator EpsA. Proteins in this family include a C-terminal LuxR transcriptional regulator domain (pfam00196). These proteins are positioned proximal to either EpsH-containing exopolysaccharide biosynthesis operons of the Methylobacillus type, or the associated PEP-CTERM-containing genes.
Probab=69.95 E-value=3 Score=42.83 Aligned_cols=54 Identities=13% Similarity=0.004 Sum_probs=47.1
Q ss_pred ccCCchHHHHHHhhhccCCchhHHHHhhhccccccccccccccccccccchhhh
Q 040406 89 ANGSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENAAAPKKA 142 (566)
Q Consensus 89 ~~~lS~re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~~lekl~~~s~KKa 142 (566)
...++++|.+++..+.+|++..+|++...++..+++.+.+....+..+..+.++
T Consensus 188 ~~~LT~RE~evl~l~a~G~s~~eIA~~L~IS~~TVk~hl~~i~~KL~v~nr~qA 241 (247)
T TIGR03020 188 AGLITAREAEILAWVRDGKTNEEIAAILGISSLTVKNHLQHIFKKLDVRNRAQA 241 (247)
T ss_pred ccCCCHHHHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCCCCHHHH
Confidence 346899999999999999999999999999999999999888888777665444
No 111
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=68.80 E-value=15 Score=38.16 Aligned_cols=57 Identities=16% Similarity=0.223 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHhCCCCcEEEEecCCC------hHHHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 040406 14 NGLELQKEINEEFIHLPVMVMSSDDR------ESVIMKSLASGAVFYMVKPVNPDALRNVWQYA 71 (566)
Q Consensus 14 DG~eLLe~Lr~~~p~IPVIvLSa~~d------~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~v 71 (566)
+.+++++++|+. .++|+|+||-... ...+.+|.++|+++.|.-.+..++..+.+..+
T Consensus 78 ~~~~~~~~~r~~-~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~ 140 (263)
T CHL00200 78 KILSILSEVNGE-IKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVC 140 (263)
T ss_pred HHHHHHHHHhcC-CCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHH
Confidence 457788888854 6899999998753 45688999999999999988888877666554
No 112
>TIGR03541 reg_near_HchA LuxR family transcriptional regulatory, chaperone HchA-associated. Members of this protein family belong to the LuxR transcriptional regulator family, and contain both autoinducer binding (pfam03472) and transcriptional regulator (pfam00196) domains. Members, however, occur only in a few members of the Gammaproteobacteria that have the chaperone/aminopeptidase HchA, and are always encoded by the adjacent gene.
Probab=68.18 E-value=3.9 Score=41.06 Aligned_cols=53 Identities=13% Similarity=0.006 Sum_probs=45.3
Q ss_pred ccCCchHHHHHHhhhccCCchhHHHHhhhccccccccccccccccccccchhh
Q 040406 89 ANGSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENAAAPKK 141 (566)
Q Consensus 89 ~~~lS~re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~~lekl~~~s~KK 141 (566)
...++.+|++++..++.|++..||+....++.++++.+.+....++.+..+..
T Consensus 169 ~~~Lt~re~evl~~~a~G~t~~eIa~~l~is~~Tv~~~l~~~~~kl~~~~~~~ 221 (232)
T TIGR03541 169 AGVLSEREREVLAWTALGRRQADIAAILGISERTVENHLRSARRKLGVATTAQ 221 (232)
T ss_pred hccCCHHHHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHH
Confidence 34689999999999999999999999999999999999888777766655433
No 113
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=67.75 E-value=33 Score=32.09 Aligned_cols=72 Identities=11% Similarity=-0.003 Sum_probs=50.4
Q ss_pred CcEEEEeCCCCCC--CHHHHHHHHHHhC-CCCcEEEEecCC------ChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEM--NGLELQKEINEEF-IHLPVMVMSSDD------RESVIMKSLASGAVFYMVKPVNPDALRNVWQYA 71 (566)
Q Consensus 1 pDLVLlDi~MPdm--DG~eLLe~Lr~~~-p~IPVIvLSa~~------d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~v 71 (566)
||+|.+-..+... .--++++.|++.. ++++|+ +.+.. ..+...++.+.|++.++...-+.+++...|++.
T Consensus 55 ~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~-vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~ 133 (137)
T PRK02261 55 ADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLY-VGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKD 133 (137)
T ss_pred CCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEE-EECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHH
Confidence 5788888777642 3356778888773 466544 44432 344556788999999999888899998888876
Q ss_pred HH
Q 040406 72 VT 73 (566)
Q Consensus 72 L~ 73 (566)
+.
T Consensus 134 ~~ 135 (137)
T PRK02261 134 LN 135 (137)
T ss_pred hc
Confidence 53
No 114
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=63.95 E-value=1.3e+02 Score=36.33 Aligned_cols=72 Identities=21% Similarity=0.336 Sum_probs=48.6
Q ss_pred cEEEEe-CCCCCCCHHHHHHHHHHhC-CCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhh
Q 040406 2 DLVITD-LHMPEMNGLELQKEINEEF-IHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSK 75 (566)
Q Consensus 2 DLVLlD-i~MPdmDG~eLLe~Lr~~~-p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~ 75 (566)
.|+|+| +++-...++..|-++-++. ..+.+|++|. +.+.+...++..+..|-.+++..++|...|++++...
T Consensus 122 KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt--~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~E 195 (824)
T PRK07764 122 KIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATT--EPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQE 195 (824)
T ss_pred eEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeC--ChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHc
Confidence 467776 5655556665444444443 3455666663 3345667788888899999999999999998877543
No 115
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=63.55 E-value=24 Score=39.05 Aligned_cols=54 Identities=17% Similarity=0.263 Sum_probs=42.6
Q ss_pred CcEEEEeCCCCC-CCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEE
Q 040406 1 IDLVITDLHMPE-MNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYM 55 (566)
Q Consensus 1 pDLVLlDi~MPd-mDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL 55 (566)
+|+|++|.-.+. ..-.+++++||+.+|+++|| +..-.+.+.+..++++||+...
T Consensus 166 vDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi-~g~V~T~e~a~~l~~aGaD~I~ 220 (404)
T PRK06843 166 VDILVIDSAHGHSTRIIELVKKIKTKYPNLDLI-AGNIVTKEAALDLISVGADCLK 220 (404)
T ss_pred CCEEEEECCCCCChhHHHHHHHHHhhCCCCcEE-EEecCCHHHHHHHHHcCCCEEE
Confidence 589999998874 45568999999999888754 4455567888899999998865
No 116
>PRK12704 phosphodiesterase; Provisional
Probab=63.20 E-value=9.8 Score=43.22 Aligned_cols=58 Identities=9% Similarity=-0.020 Sum_probs=45.0
Q ss_pred HHHHHHHHHh----CCCCcEEEEecCCChH--HHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 040406 16 LELQKEINEE----FIHLPVMVMSSDDRES--VIMKSLASGAVFYMVKPVNPDALRNVWQYAVT 73 (566)
Q Consensus 16 ~eLLe~Lr~~----~p~IPVIvLSa~~d~~--~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~ 73 (566)
+..++.+..- .....+|++|+.++.. .+..+++.++.|+..||+..+++...++.-+.
T Consensus 233 ir~~e~~tgvd~iiddtp~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~~ 296 (520)
T PRK12704 233 IRALETLTGVDLIIDDTPEAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEVD 296 (520)
T ss_pred HHHHHHHhCCeEEEcCCCCeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHH
Confidence 4455555431 2235689999988765 88999999999999999999999998887664
No 117
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=61.55 E-value=31 Score=36.09 Aligned_cols=55 Identities=20% Similarity=0.367 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHhCCCCcEEEEecCCC------hHHHHHHHhcCCcEEEeCCCChHHHHHHH
Q 040406 14 NGLELQKEINEEFIHLPVMVMSSDDR------ESVIMKSLASGAVFYMVKPVNPDALRNVW 68 (566)
Q Consensus 14 DG~eLLe~Lr~~~p~IPVIvLSa~~d------~~~~~~Al~aGA~dYL~KP~~~eeL~~aI 68 (566)
+-+++++.+|+....+|+|+|+-... .....+|.+.|+++.|.-.+.+++-....
T Consensus 80 ~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~ 140 (265)
T COG0159 80 DTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELL 140 (265)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHH
Confidence 45788888888888999999998764 34567899999999999877666655433
No 118
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=60.40 E-value=20 Score=37.27 Aligned_cols=54 Identities=19% Similarity=0.299 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhCCCCcEEEEecCCC------hHHHHHHHhcCCcEEEeCCCChHHHHHHH
Q 040406 15 GLELQKEINEEFIHLPVMVMSSDDR------ESVIMKSLASGAVFYMVKPVNPDALRNVW 68 (566)
Q Consensus 15 G~eLLe~Lr~~~p~IPVIvLSa~~d------~~~~~~Al~aGA~dYL~KP~~~eeL~~aI 68 (566)
.+++++++|+..+++|+|+||-... .....+|.++|+++.|.-.+..++-....
T Consensus 74 ~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~ 133 (259)
T PF00290_consen 74 IFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELR 133 (259)
T ss_dssp HHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHH
T ss_pred HHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHH
Confidence 4678888887788999999998653 34677888999999999877777655443
No 119
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=60.26 E-value=62 Score=30.12 Aligned_cols=72 Identities=8% Similarity=-0.125 Sum_probs=44.5
Q ss_pred CcEEEEeCCCCC-CCH-HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHH
Q 040406 1 IDLVITDLHMPE-MNG-LELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAV 72 (566)
Q Consensus 1 pDLVLlDi~MPd-mDG-~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL 72 (566)
+|+|.+-..+.. +.. -++++.|+++......|++-+....+......++|+++|+..--+..++...+.+.+
T Consensus 54 adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~~ 127 (132)
T TIGR00640 54 VHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKKL 127 (132)
T ss_pred CCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHHH
Confidence 355555444422 222 235566666554333455554444555667889999999998888888888777654
No 120
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=56.43 E-value=25 Score=30.64 Aligned_cols=46 Identities=13% Similarity=0.286 Sum_probs=34.1
Q ss_pred CCcEEEEecC--CChHHHHHHHhcCCcEEEeCCC--ChHHHHHHHHHHHH
Q 040406 28 HLPVMVMSSD--DRESVIMKSLASGAVFYMVKPV--NPDALRNVWQYAVT 73 (566)
Q Consensus 28 ~IPVIvLSa~--~d~~~~~~Al~aGA~dYL~KP~--~~eeL~~aI~~vL~ 73 (566)
++-+|+++.. ...+.+..+++.|..-|+-||+ +.+++.++++.+-+
T Consensus 62 ~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~ 111 (120)
T PF01408_consen 62 DVDAVIIATPPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKE 111 (120)
T ss_dssp TESEEEEESSGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred cCCEEEEecCCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHH
Confidence 3445555444 3457788999999999999997 78888888776543
No 121
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=55.83 E-value=36 Score=37.88 Aligned_cols=54 Identities=15% Similarity=0.210 Sum_probs=41.7
Q ss_pred CcEEEEeCCCCC-CCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEE
Q 040406 1 IDLVITDLHMPE-MNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYM 55 (566)
Q Consensus 1 pDLVLlDi~MPd-mDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL 55 (566)
+|+|.+|..-.. ..-.+.+++|++.+|++|||+ ..-.+.+.+..++++||+.+.
T Consensus 237 ~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~~aGad~i~ 291 (450)
T TIGR01302 237 VDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIA-GNVATAEQAKALIDAGADGLR 291 (450)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEE-EeCCCHHHHHHHHHhCCCEEE
Confidence 478899985543 345778899999888999887 344567788899999998873
No 122
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=55.74 E-value=38 Score=36.71 Aligned_cols=56 Identities=18% Similarity=0.179 Sum_probs=41.8
Q ss_pred CcEEEEeCCCCCCC-HHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeC
Q 040406 1 IDLVITDLHMPEMN-GLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVK 57 (566)
Q Consensus 1 pDLVLlDi~MPdmD-G~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~K 57 (566)
+|+|++|+--.... -++.+++||+.+|+++|| --.-.+.+.+..++++||+...+-
T Consensus 122 ~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~vi-aGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 122 LKFICLDVANGYSEHFVEFVKLVREAFPEHTIM-AGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEE-EecccCHHHHHHHHHcCCCEEEEc
Confidence 58999998766543 367899999999875444 333566788889999999997643
No 123
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=54.88 E-value=1.9e+02 Score=30.18 Aligned_cols=44 Identities=7% Similarity=0.084 Sum_probs=29.1
Q ss_pred CcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 29 LPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 29 IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
+.+|+.+ .+...+..++..-+..+-.+|.+.+++...++..++.
T Consensus 148 ~~lIl~~--~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~ 191 (355)
T TIGR02397 148 VVFILAT--TEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDK 191 (355)
T ss_pred eeEEEEe--CCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHH
Confidence 3344444 2344444566666677778899999999988887654
No 124
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=53.97 E-value=63 Score=31.97 Aligned_cols=71 Identities=20% Similarity=0.133 Sum_probs=44.2
Q ss_pred CcEEEEeCCCCC---------CCHHHHHHHHHH-hCCCCcEEEEecCCChHHHHH---HHhcCCcEEEe-CCCChHHHHH
Q 040406 1 IDLVITDLHMPE---------MNGLELQKEINE-EFIHLPVMVMSSDDRESVIMK---SLASGAVFYMV-KPVNPDALRN 66 (566)
Q Consensus 1 pDLVLlDi~MPd---------mDG~eLLe~Lr~-~~p~IPVIvLSa~~d~~~~~~---Al~aGA~dYL~-KP~~~eeL~~ 66 (566)
+|.|++|+.-.. .+-.+++..++. ....+.+++=....+.....+ +++.|+++++. |--+.++++.
T Consensus 22 ~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~~~~~~~~VRvn~~~~~~~~~Dl~~l~~g~~gI~lP~ves~~~~~~ 101 (221)
T PF03328_consen 22 ADFVILDLEDGVPPDEKDEAREDLAEALRSIRAARAAGSEIIVRVNSLDSPHIERDLEALDAGADGIVLPKVESAEDARQ 101 (221)
T ss_dssp SSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHTTSSSEEEEE-SSTTCHHHHHHHHHHHTTSSEEEETT--SHHHHHH
T ss_pred CCEEEEeCcccCCcccchhhHHHHHHHHHhhcccccccccceecCCCCCcchhhhhhhhcccCCCeeeccccCcHHHHHH
Confidence 689999998655 334455555554 223345666555555555556 99999998555 4446777777
Q ss_pred HHHHH
Q 040406 67 VWQYA 71 (566)
Q Consensus 67 aI~~v 71 (566)
+++.+
T Consensus 102 ~~~~~ 106 (221)
T PF03328_consen 102 AVAAL 106 (221)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 125
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=53.84 E-value=73 Score=31.49 Aligned_cols=43 Identities=23% Similarity=0.221 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeC
Q 040406 14 NGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVK 57 (566)
Q Consensus 14 DG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~K 57 (566)
..+++++++++.. ++|||...+-.+.+.+.++++.||+.++.=
T Consensus 160 ~~~~~i~~i~~~~-~iPvia~GGI~t~~~~~~~l~~GadgV~iG 202 (221)
T PRK01130 160 PDFALLKELLKAV-GCPVIAEGRINTPEQAKKALELGAHAVVVG 202 (221)
T ss_pred cCHHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHCCCCEEEEc
Confidence 3478899998876 799999888888899999999999987664
No 126
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=53.78 E-value=70 Score=31.47 Aligned_cols=66 Identities=18% Similarity=0.200 Sum_probs=44.4
Q ss_pred EEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEe--CCCChHHHHHHHHHH
Q 040406 5 ITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV--KPVNPDALRNVWQYA 71 (566)
Q Consensus 5 LlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~--KP~~~eeL~~aI~~v 71 (566)
++|...--...++.++.+++.. ++||++...-.+...+..+++.||+..+. .-+..+++.+.++..
T Consensus 50 v~~~~~~~~g~~~~~~~i~~~v-~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~ 117 (217)
T cd00331 50 VLTEPKYFQGSLEDLRAVREAV-SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELA 117 (217)
T ss_pred EEeCccccCCCHHHHHHHHHhc-CCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHH
Confidence 3343333345678888888864 89999876555666788899999999873 334445666665554
No 127
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=52.22 E-value=3.2e+02 Score=33.65 Aligned_cols=71 Identities=14% Similarity=0.214 Sum_probs=47.7
Q ss_pred cEEEEe-CCCCCCCHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 2 DLVITD-LHMPEMNGLELQKEINEEFI-HLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 2 DLVLlD-i~MPdmDG~eLLe~Lr~~~p-~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
-|+|+| ++|-..+.++.|-++-++.| .+.+|+.|. +...+...+...+.-|-.||++.+++...|++++..
T Consensus 121 KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTT--e~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~ 193 (944)
T PRK14949 121 KVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATT--DPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQ 193 (944)
T ss_pred EEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECC--CchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHH
Confidence 367777 66655556665444444433 344555443 344456677778889999999999999999988765
No 128
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=52.18 E-value=27 Score=36.20 Aligned_cols=57 Identities=23% Similarity=0.241 Sum_probs=44.4
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEe-----CCCChHHHHHHHHHHHH
Q 040406 16 LELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV-----KPVNPDALRNVWQYAVT 73 (566)
Q Consensus 16 ~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~-----KP~~~eeL~~aI~~vL~ 73 (566)
.++++.|++. .++|||+=.+-...+.+.+|++.||++.+. |.-++..+.++...++.
T Consensus 164 ~~~I~~I~e~-~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~ 225 (248)
T cd04728 164 PYNLRIIIER-ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVE 225 (248)
T ss_pred HHHHHHHHHh-CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHH
Confidence 6888999887 589999988889999999999999999765 43445555555555543
No 129
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=51.61 E-value=69 Score=32.26 Aligned_cols=61 Identities=15% Similarity=0.206 Sum_probs=41.1
Q ss_pred EEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHH
Q 040406 5 ITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRN 66 (566)
Q Consensus 5 LlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~ 66 (566)
++++-+-.-++++.++.+++.+|++-|-+=| -.+.+.+.+++++||+-.+.--++.+.+..
T Consensus 43 ~iEitl~~~~~~~~I~~l~~~~p~~~IGAGT-Vl~~~~a~~a~~aGA~FivsP~~~~~vi~~ 103 (212)
T PRK05718 43 VLEVTLRTPAALEAIRLIAKEVPEALIGAGT-VLNPEQLAQAIEAGAQFIVSPGLTPPLLKA 103 (212)
T ss_pred EEEEecCCccHHHHHHHHHHHCCCCEEEEee-ccCHHHHHHHHHcCCCEEECCCCCHHHHHH
Confidence 3455566668999999999999874433322 234577889999999766665566643333
No 130
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=51.60 E-value=56 Score=31.74 Aligned_cols=57 Identities=14% Similarity=0.103 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHH
Q 040406 15 GLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAV 72 (566)
Q Consensus 15 G~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL 72 (566)
-.+.++++++..|..+.|.+ ...+.+.+.+|+++|++..+.--+++++++++++.+.
T Consensus 66 i~~av~~~~~~~~~~~~I~V-Ev~~~ee~~ea~~~g~d~I~lD~~~~~~~~~~v~~l~ 122 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEV-EVENLEEAEEALEAGADIIMLDNMSPEDLKEAVEELR 122 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEE-EESSHHHHHHHHHTT-SEEEEES-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCceEEE-EcCCHHHHHHHHHhCCCEEEecCcCHHHHHHHHHHHh
Confidence 45788889988887764444 3345677889999999999999999999999998773
No 131
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=51.28 E-value=67 Score=32.10 Aligned_cols=63 Identities=19% Similarity=0.266 Sum_probs=41.9
Q ss_pred EEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHH
Q 040406 5 ITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVW 68 (566)
Q Consensus 5 LlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI 68 (566)
++++-|-.-+.++.++.+++++|++-| =.-.--+.+.+.+|+++||...+..-++.+-+..+.
T Consensus 36 ~iEiT~~t~~a~~~I~~l~~~~p~~~v-GAGTV~~~e~a~~a~~aGA~FivSP~~~~~v~~~~~ 98 (196)
T PF01081_consen 36 AIEITLRTPNALEAIEALRKEFPDLLV-GAGTVLTAEQAEAAIAAGAQFIVSPGFDPEVIEYAR 98 (196)
T ss_dssp EEEEETTSTTHHHHHHHHHHHHTTSEE-EEES--SHHHHHHHHHHT-SEEEESS--HHHHHHHH
T ss_pred EEEEecCCccHHHHHHHHHHHCCCCee-EEEeccCHHHHHHHHHcCCCEEECCCCCHHHHHHHH
Confidence 466677778899999999999887432 233335678889999999987777556655554443
No 132
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=51.14 E-value=45 Score=29.51 Aligned_cols=56 Identities=14% Similarity=0.046 Sum_probs=35.1
Q ss_pred CcEEEEeCCCCC--CCHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHhcCCcEEEeC
Q 040406 1 IDLVITDLHMPE--MNGLELQKEINEEFI-HLPVMVMSSDDRESVIMKSLASGAVFYMVK 57 (566)
Q Consensus 1 pDLVLlDi~MPd--mDG~eLLe~Lr~~~p-~IPVIvLSa~~d~~~~~~Al~aGA~dYL~K 57 (566)
||+|.+-..+.. .+..++++.+|+..+ +++| ++.+..-......+.+.|++.|+..
T Consensus 51 pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i-~vGG~~~~~~~~~~~~~G~D~~~~~ 109 (119)
T cd02067 51 ADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPV-LVGGAIVTRDFKFLKEIGVDAYFGP 109 (119)
T ss_pred CCEEEEeccccccHHHHHHHHHHHHHcCCCCCeE-EEECCCCChhHHHHHHcCCeEEECC
Confidence 577777766544 344667788888776 5554 4555444333356778898777664
No 133
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=51.01 E-value=47 Score=29.80 Aligned_cols=70 Identities=19% Similarity=0.127 Sum_probs=43.9
Q ss_pred CcEEEEeCCCCCC-CHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEM-NGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYA 71 (566)
Q Consensus 1 pDLVLlDi~MPdm-DG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~v 71 (566)
||+|.+.+..... ...++++.+|+..|+++||+--....... ...+..-..||+.+---..-+.+.++.+
T Consensus 40 pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv~GG~~~t~~p-~~~~~~~~~D~vv~GEgE~~~~~l~~~l 110 (127)
T cd02068 40 PDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGPHATFFP-EEILEEPGVDFVVIGEGEETFLKLLEEL 110 (127)
T ss_pred CCEEEEeeccccHHHHHHHHHHHHHHCCCCEEEECCcchhhCH-HHHhcCCCCCEEEECCcHHHHHHHHHHH
Confidence 6888888755553 45678899999999888877554433221 1223444557888755455555555543
No 134
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=49.36 E-value=59 Score=31.19 Aligned_cols=55 Identities=25% Similarity=0.284 Sum_probs=40.3
Q ss_pred CcEEEEeCCCCC--------CCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEe
Q 040406 1 IDLVITDLHMPE--------MNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV 56 (566)
Q Consensus 1 pDLVLlDi~MPd--------mDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~ 56 (566)
+|+|.++-..+. ..|++.++.+.+..+++||+++-+- +.+.+.++++.|++++..
T Consensus 117 ~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~~~G~~gva~ 179 (196)
T TIGR00693 117 ADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGI-TLENAAEVLAAGADGVAV 179 (196)
T ss_pred CCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEEEE
Confidence 367776655442 2378999999877767998887665 467788888999988654
No 135
>PRK00208 thiG thiazole synthase; Reviewed
Probab=48.89 E-value=33 Score=35.67 Aligned_cols=57 Identities=21% Similarity=0.211 Sum_probs=44.6
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEe-----CCCChHHHHHHHHHHHH
Q 040406 16 LELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV-----KPVNPDALRNVWQYAVT 73 (566)
Q Consensus 16 ~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~-----KP~~~eeL~~aI~~vL~ 73 (566)
.++++.|++. .++|||+=.+-...+.+.++++.||++.+. |.-++..+.++...++.
T Consensus 164 ~~~i~~i~e~-~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~ 225 (250)
T PRK00208 164 PYNLRIIIEQ-ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVE 225 (250)
T ss_pred HHHHHHHHHh-cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHH
Confidence 6788999887 589999988889999999999999999765 43445566555555543
No 136
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=48.67 E-value=51 Score=33.61 Aligned_cols=50 Identities=18% Similarity=0.316 Sum_probs=37.0
Q ss_pred HHHHHHHhCCCCcEEEEecCC------ChHHHHHHHhcCCcEEEeCCCChHHHHHH
Q 040406 18 LQKEINEEFIHLPVMVMSSDD------RESVIMKSLASGAVFYMVKPVNPDALRNV 67 (566)
Q Consensus 18 LLe~Lr~~~p~IPVIvLSa~~------d~~~~~~Al~aGA~dYL~KP~~~eeL~~a 67 (566)
.+++.|.+.-.+|||+|+-+. .+..+..|.++||.+||.-.+.+||-...
T Consensus 85 mvk~ar~~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~ 140 (268)
T KOG4175|consen 85 MVKEARPQGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETL 140 (268)
T ss_pred HHHHhcccCcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHH
Confidence 333333344569999998765 46778889999999999998888776543
No 137
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=46.71 E-value=69 Score=32.76 Aligned_cols=55 Identities=27% Similarity=0.270 Sum_probs=43.7
Q ss_pred cEEEEeCCCCCC--CHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEe
Q 040406 2 DLVITDLHMPEM--NGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV 56 (566)
Q Consensus 2 DLVLlDi~MPdm--DG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~ 56 (566)
|.|.+|...++. -.++.++++++..+++|||..-+-.+.+.+.+.++.||+....
T Consensus 163 d~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 163 DGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred CEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 566778766654 2488899998877569999988888889999999999988654
No 138
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=46.48 E-value=65 Score=34.32 Aligned_cols=55 Identities=16% Similarity=0.201 Sum_probs=39.7
Q ss_pred CcEEEEeCCCCC-CCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEe
Q 040406 1 IDLVITDLHMPE-MNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV 56 (566)
Q Consensus 1 pDLVLlDi~MPd-mDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~ 56 (566)
+|+|.+|..... ..-.+++++|++..|+++|++ ....+.+.+.+++++||+....
T Consensus 107 v~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~-G~v~t~~~A~~l~~aGaD~I~v 162 (325)
T cd00381 107 VDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIA-GNVVTAEAARDLIDAGADGVKV 162 (325)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEE-CCCCCHHHHHHHHhcCCCEEEE
Confidence 467788875432 234678899998887777776 3345667888999999998764
No 139
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=46.35 E-value=4.7e+02 Score=31.27 Aligned_cols=71 Identities=14% Similarity=0.245 Sum_probs=45.7
Q ss_pred cEEEEe-CCCCCCCHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 2 DLVITD-LHMPEMNGLELQKEINEEFI-HLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 2 DLVLlD-i~MPdmDG~eLLe~Lr~~~p-~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
.|+|+| ++|-....+..+.++-++.+ .+.+|+.|.. ...+...+...+.-|-.||++.+++...+++++..
T Consensus 120 KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd--~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~k 192 (702)
T PRK14960 120 KVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTD--PQKLPITVISRCLQFTLRPLAVDEITKHLGAILEK 192 (702)
T ss_pred EEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECC--hHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHH
Confidence 467776 56655556654444444433 4556665533 33333455566788889999999999999988754
No 140
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=46.14 E-value=62 Score=36.76 Aligned_cols=55 Identities=20% Similarity=0.195 Sum_probs=39.9
Q ss_pred CcEEEEeCCCCC-CCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEe
Q 040406 1 IDLVITDLHMPE-MNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV 56 (566)
Q Consensus 1 pDLVLlDi~MPd-mDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~ 56 (566)
.|+|.+|.--.. ..-++++++||+.+|+++||+ ..-.+.+.+..|+++||+....
T Consensus 261 ~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~-g~v~t~e~a~~a~~aGaD~i~v 316 (505)
T PLN02274 261 VDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIG-GNVVTMYQAQNLIQAGVDGLRV 316 (505)
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEE-ecCCCHHHHHHHHHcCcCEEEE
Confidence 489999984221 123489999999998877764 3345567788999999998754
No 141
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=45.83 E-value=1.3e+02 Score=28.27 Aligned_cols=72 Identities=8% Similarity=0.026 Sum_probs=46.1
Q ss_pred CcEEEEeCCCCC-CC-HHHHHHHHHHhCCCCcEEEEecCC---ChH---HHHHHHhcCCcEEEeCCCChHHHHHHHHHHH
Q 040406 1 IDLVITDLHMPE-MN-GLELQKEINEEFIHLPVMVMSSDD---RES---VIMKSLASGAVFYMVKPVNPDALRNVWQYAV 72 (566)
Q Consensus 1 pDLVLlDi~MPd-mD-G~eLLe~Lr~~~p~IPVIvLSa~~---d~~---~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL 72 (566)
+|+|.+...|.. +. --++.+.|+++...-++|++-+.. ..+ ...++.+.|++..+...-.++++...|++.+
T Consensus 53 adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~ 132 (134)
T TIGR01501 53 ADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDL 132 (134)
T ss_pred CCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHh
Confidence 467777666643 22 234666777665433456565531 111 2446788999999988888899998888765
No 142
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=45.61 E-value=56 Score=36.83 Aligned_cols=54 Identities=13% Similarity=0.174 Sum_probs=42.0
Q ss_pred CcEEEEeCCCCCC-CHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEE
Q 040406 1 IDLVITDLHMPEM-NGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYM 55 (566)
Q Consensus 1 pDLVLlDi~MPdm-DG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL 55 (566)
.|+|++|.....- .-.+++++|++.++++|||+ -...+.+.+..++++||+..-
T Consensus 238 Vd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~-g~~~t~~~~~~l~~~G~d~i~ 292 (475)
T TIGR01303 238 VDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVA-GNVVSAEGVRDLLEAGANIIK 292 (475)
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEE-eccCCHHHHHHHHHhCCCEEE
Confidence 4789999987543 33678899999999999887 335677888899999998754
No 143
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=45.37 E-value=67 Score=34.94 Aligned_cols=53 Identities=9% Similarity=0.109 Sum_probs=39.9
Q ss_pred CcEEEEeCCCCCCC-HHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEE
Q 040406 1 IDLVITDLHMPEMN-GLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFY 54 (566)
Q Consensus 1 pDLVLlDi~MPdmD-G~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dY 54 (566)
+|+|++|+--.... -++++++||+.+|+++|| .-.-.+.+.+...+++||+..
T Consensus 123 ~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vI-aGNV~T~e~a~~Li~aGAD~v 176 (346)
T PRK05096 123 LNFICIDVANGYSEHFVQFVAKAREAWPDKTIC-AGNVVTGEMVEELILSGADIV 176 (346)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEE-EecccCHHHHHHHHHcCCCEE
Confidence 58999998765543 367899999999988755 334455677778889999974
No 144
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=45.35 E-value=1.1e+02 Score=30.64 Aligned_cols=61 Identities=8% Similarity=0.090 Sum_probs=41.3
Q ss_pred EEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHH
Q 040406 5 ITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRN 66 (566)
Q Consensus 5 LlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~ 66 (566)
++++-|-.-+.++.+++++++++++- |=.-.--+.+.+.+++++||...+..-++.+.+..
T Consensus 32 ~iEit~~tp~a~~~I~~l~~~~~~~~-vGAGTVl~~e~a~~ai~aGA~FivSP~~~~~vi~~ 92 (201)
T PRK06015 32 AIEITLRTPAALDAIRAVAAEVEEAI-VGAGTILNAKQFEDAAKAGSRFIVSPGTTQELLAA 92 (201)
T ss_pred EEEEeCCCccHHHHHHHHHHHCCCCE-EeeEeCcCHHHHHHHHHcCCCEEECCCCCHHHHHH
Confidence 46677777889999999998886522 22222346788899999999765554455544443
No 145
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=44.97 E-value=39 Score=35.82 Aligned_cols=61 Identities=25% Similarity=0.155 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHhCCCCcEE--EEecCCChHHHHHHHhcCCcEEEe-----CCCChHHHHHHHHHHHHhh
Q 040406 14 NGLELQKEINEEFIHLPVM--VMSSDDRESVIMKSLASGAVFYMV-----KPVNPDALRNVWQYAVTSK 75 (566)
Q Consensus 14 DG~eLLe~Lr~~~p~IPVI--vLSa~~d~~~~~~Al~aGA~dYL~-----KP~~~eeL~~aI~~vL~~~ 75 (566)
-++++++++++.. .+||| ...+-.+.+.+..++++||+.++. |.-++.+..+.+..++..+
T Consensus 184 ~~~elLkei~~~~-~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~~ 251 (287)
T TIGR00343 184 VPVELLLEVLKLG-KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTHY 251 (287)
T ss_pred CCHHHHHHHHHhC-CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHHc
Confidence 5789999998865 69998 666666889999999999999754 4445666666666665543
No 146
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=44.67 E-value=66 Score=36.11 Aligned_cols=54 Identities=13% Similarity=0.209 Sum_probs=41.4
Q ss_pred CcEEEEeCCCCC-CCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEE
Q 040406 1 IDLVITDLHMPE-MNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYM 55 (566)
Q Consensus 1 pDLVLlDi~MPd-mDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL 55 (566)
+|+|++|..... ..-++.++.|++++|++|||+ -.-.+.+.+..++++||+...
T Consensus 241 vdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~-g~v~t~e~a~~l~~aGad~i~ 295 (486)
T PRK05567 241 VDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIA-GNVATAEAARALIEAGADAVK 295 (486)
T ss_pred CCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEE-eccCCHHHHHHHHHcCCCEEE
Confidence 477888864333 445778899999888899887 555677888899999998874
No 147
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=43.07 E-value=52 Score=35.00 Aligned_cols=62 Identities=24% Similarity=0.150 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHhCCCCcEE--EEecCCChHHHHHHHhcCCcEEEe-----CCCChHHHHHHHHHHHHhhc
Q 040406 14 NGLELQKEINEEFIHLPVM--VMSSDDRESVIMKSLASGAVFYMV-----KPVNPDALRNVWQYAVTSKK 76 (566)
Q Consensus 14 DG~eLLe~Lr~~~p~IPVI--vLSa~~d~~~~~~Al~aGA~dYL~-----KP~~~eeL~~aI~~vL~~~~ 76 (566)
-++++++++++.. .+||| ....-.+.+.+..+++.||+.++. |.-++.+..+.+..++..+.
T Consensus 190 ~~~elL~ei~~~~-~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~~~~ 258 (293)
T PRK04180 190 APYELVKEVAELG-RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATTHYD 258 (293)
T ss_pred CCHHHHHHHHHhC-CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHHHcC
Confidence 4789999998876 69998 666666889999999999999654 33466666666666665543
No 148
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=42.95 E-value=60 Score=33.66 Aligned_cols=58 Identities=9% Similarity=0.068 Sum_probs=43.7
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcE------EEeCCCChHHHHHHHHHHHHh
Q 040406 16 LELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVF------YMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 16 ~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~d------YL~KP~~~eeL~~aI~~vL~~ 74 (566)
++.+.++++.. ++|||..-+-.+.+.+.+++..||+. ++.+|.-..++++-+.+.+..
T Consensus 223 l~~v~~i~~~~-~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~ 286 (300)
T TIGR01037 223 LRMVYDVYKMV-DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKA 286 (300)
T ss_pred HHHHHHHHhcC-CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHH
Confidence 36677777765 69999999989999999999999876 566776566666666655543
No 149
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=41.86 E-value=1.4e+02 Score=30.06 Aligned_cols=59 Identities=10% Similarity=0.157 Sum_probs=39.8
Q ss_pred EEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHH
Q 040406 5 ITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDAL 64 (566)
Q Consensus 5 LlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL 64 (566)
++++.|-.-+.++.+++++++++++.|=+=| --+.+.+.+++++||...+..-++.+.+
T Consensus 36 ~iEit~~t~~a~~~i~~l~~~~~~~~vGAGT-Vl~~~~a~~a~~aGA~FivsP~~~~~v~ 94 (204)
T TIGR01182 36 VLEVTLRTPVALDAIRLLRKEVPDALIGAGT-VLNPEQLRQAVDAGAQFIVSPGLTPELA 94 (204)
T ss_pred EEEEeCCCccHHHHHHHHHHHCCCCEEEEEe-CCCHHHHHHHHHcCCCEEECCCCCHHHH
Confidence 3455566677899999999988764433323 3466778899999997665544444333
No 150
>TIGR00721 tfx DNA-binding protein, Tfx family. Tfx from Methanobacterium thermoautotrophicum is associated with the operon for molybdenum formyl-methanofuran dehydrogenase and binds a DNA sequence near its promoter.
Probab=41.85 E-value=13 Score=35.15 Aligned_cols=44 Identities=18% Similarity=0.092 Sum_probs=37.2
Q ss_pred CCchHHHHHHhhhccCCchhHHHHhhhccccccccccccccccc
Q 040406 91 GSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGE 134 (566)
Q Consensus 91 ~lS~re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~~lekl 134 (566)
.+++++++++.....|.+..+|++...++..+++.+.+...+++
T Consensus 6 ~Lte~qr~VL~Lr~~GlTq~EIAe~LgiS~stV~~~e~ra~kkL 49 (137)
T TIGR00721 6 FLTERQIKVLELREKGLSQKEIAKELKTTRANVSAIEKRAMENI 49 (137)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHhHHHHH
Confidence 47888999998889999999999999999988887776655554
No 151
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=41.42 E-value=83 Score=31.90 Aligned_cols=55 Identities=15% Similarity=0.234 Sum_probs=43.7
Q ss_pred cEEEEeCCCCCC-CH--HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeC
Q 040406 2 DLVITDLHMPEM-NG--LELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVK 57 (566)
Q Consensus 2 DLVLlDi~MPdm-DG--~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~K 57 (566)
.+|++|+..-++ .| +++++++.+.. ++|||+-.+-.+.+.+.++++.|++..+.=
T Consensus 164 ~ii~tdi~~dGt~~G~~~~li~~l~~~~-~ipvi~~GGi~s~edi~~l~~~G~~~vivG 221 (234)
T PRK13587 164 GIIYTDIAKDGKMSGPNFELTGQLVKAT-TIPVIASGGIRHQQDIQRLASLNVHAAIIG 221 (234)
T ss_pred EEEEecccCcCCCCccCHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCCEEEEh
Confidence 378888876542 33 67888888764 899999888899999999999999998763
No 152
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=41.30 E-value=76 Score=35.92 Aligned_cols=54 Identities=11% Similarity=0.247 Sum_probs=39.0
Q ss_pred CcEEEEeCCCCC-CCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEE
Q 040406 1 IDLVITDLHMPE-MNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYM 55 (566)
Q Consensus 1 pDLVLlDi~MPd-mDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL 55 (566)
.|+|.+|..-.. ...++.+++|++.+|+++|++ -.-.+.+.+..++++||+.+.
T Consensus 254 ~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~a-G~V~t~~~a~~~~~aGad~I~ 308 (495)
T PTZ00314 254 VDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIA-GNVVTADQAKNLIDAGADGLR 308 (495)
T ss_pred CCEEEEecCCCCchHHHHHHHHHHhhCCCceEEE-CCcCCHHHHHHHHHcCCCEEE
Confidence 478888874322 223689999999888877765 233456788899999999874
No 153
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=41.10 E-value=88 Score=31.56 Aligned_cols=54 Identities=19% Similarity=0.224 Sum_probs=43.0
Q ss_pred cEEEEeCCCCCC-C--HHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEe
Q 040406 2 DLVITDLHMPEM-N--GLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV 56 (566)
Q Consensus 2 DLVLlDi~MPdm-D--G~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~ 56 (566)
.++++|+..-++ . -+++++++.+. ..+||++-.+-.+.+.+.++++.|++..+.
T Consensus 161 ~li~~di~~~G~~~g~~~~~~~~i~~~-~~ipvi~~GGi~s~edi~~l~~~G~~~viv 217 (233)
T cd04723 161 ELIVLDIDRVGSGQGPDLELLERLAAR-ADIPVIAAGGVRSVEDLELLKKLGASGALV 217 (233)
T ss_pred eEEEEEcCccccCCCcCHHHHHHHHHh-cCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 378889876542 2 26788888776 489999999999999999999999998775
No 154
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.37 E-value=1.1e+02 Score=32.22 Aligned_cols=53 Identities=11% Similarity=0.174 Sum_probs=42.7
Q ss_pred HHHHHHHHHhCCC-CcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHH
Q 040406 16 LELQKEINEEFIH-LPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQY 70 (566)
Q Consensus 16 ~eLLe~Lr~~~p~-IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~ 70 (566)
.++++++|...|. .+| +...++.+.+..|+++||+-.+.--+++++|+++++.
T Consensus 169 ~~~v~~~k~~~p~~~~I--~VEv~tleea~~A~~~GaDiI~LDn~~~e~l~~~v~~ 222 (273)
T PRK05848 169 KEFIQHARKNIPFTAKI--EIECESLEEAKNAMNAGADIVMCDNMSVEEIKEVVAY 222 (273)
T ss_pred HHHHHHHHHhCCCCceE--EEEeCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Confidence 4677888887774 443 3355678889999999999999988999999999975
No 155
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=40.13 E-value=92 Score=30.76 Aligned_cols=43 Identities=26% Similarity=0.321 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeC
Q 040406 14 NGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVK 57 (566)
Q Consensus 14 DG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~K 57 (566)
..+++++++++.. ++|||...+-.+.+.+.++++.||+.++.-
T Consensus 164 ~~~~~l~~i~~~~-~ipvia~GGI~~~~~~~~~l~~GadgV~vG 206 (219)
T cd04729 164 PDFELLKELRKAL-GIPVIAEGRINSPEQAAKALELGADAVVVG 206 (219)
T ss_pred CCHHHHHHHHHhc-CCCEEEeCCCCCHHHHHHHHHCCCCEEEEc
Confidence 4578899998876 799999888888999999999999998764
No 156
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=39.64 E-value=1e+02 Score=28.79 Aligned_cols=55 Identities=31% Similarity=0.305 Sum_probs=39.3
Q ss_pred CcEEEEeCCCCC--------CCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeC
Q 040406 1 IDLVITDLHMPE--------MNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVK 57 (566)
Q Consensus 1 pDLVLlDi~MPd--------mDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~K 57 (566)
+|.|+++...|. ..+++.++++++. .++||++..+-. .+.+.++++.|++.+..=
T Consensus 116 ~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pv~a~GGi~-~~~i~~~~~~Ga~~i~~g 178 (196)
T cd00564 116 ADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL-VEIPVVAIGGIT-PENAAEVLAAGADGVAVI 178 (196)
T ss_pred CCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh-CCCCEEEECCCC-HHHHHHHHHcCCCEEEEe
Confidence 467776644432 3457888888776 478999887764 577888999999987554
No 157
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=38.87 E-value=1.1e+02 Score=31.12 Aligned_cols=54 Identities=19% Similarity=0.377 Sum_probs=35.0
Q ss_pred HHHHHHHHhCCCCcEEEEe-----cCCChHHHHHHHhcCCcEEEeC--CCC-hHHHHHHHHHH
Q 040406 17 ELQKEINEEFIHLPVMVMS-----SDDRESVIMKSLASGAVFYMVK--PVN-PDALRNVWQYA 71 (566)
Q Consensus 17 eLLe~Lr~~~p~IPVIvLS-----a~~d~~~~~~Al~aGA~dYL~K--P~~-~eeL~~aI~~v 71 (566)
++++.+|+. .++|+++|+ ..+....+..+.+.|++.++.- |++ .+++.+.++.+
T Consensus 64 ~~v~~vr~~-~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~ 125 (244)
T PRK13125 64 PLLEEVRKD-VSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEII 125 (244)
T ss_pred HHHHHHhcc-CCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHH
Confidence 466666644 478987775 2233455778889999999986 343 35655555444
No 158
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=38.18 E-value=1.3e+02 Score=30.23 Aligned_cols=62 Identities=16% Similarity=0.178 Sum_probs=41.5
Q ss_pred EEeCCCCCCCHHHHHHHHHHhCCCCc-EEEEec-CCChHHHHHHHhcCCcEEEeCCCChHHHHH
Q 040406 5 ITDLHMPEMNGLELQKEINEEFIHLP-VMVMSS-DDRESVIMKSLASGAVFYMVKPVNPDALRN 66 (566)
Q Consensus 5 LlDi~MPdmDG~eLLe~Lr~~~p~IP-VIvLSa-~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~ 66 (566)
++++-|-.-+.++.++.|++++++-| +++=.+ --+.+.+.+|+++||...+..-++.+.+..
T Consensus 41 ~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~FivsP~~~~~v~~~ 104 (213)
T PRK06552 41 AIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVSPSFNRETAKI 104 (213)
T ss_pred EEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEECCCCCHHHHHH
Confidence 46667777889999999999875433 333222 356788899999999765554344444433
No 159
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.12 E-value=5.3e+02 Score=27.65 Aligned_cols=71 Identities=18% Similarity=0.339 Sum_probs=42.5
Q ss_pred cEEEEe-CCCCCCCHHH-HHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 2 DLVITD-LHMPEMNGLE-LQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 2 DLVLlD-i~MPdmDG~e-LLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
.|||+| +++-....++ +++.+.+-.+.+.+|++|. +...+...+...+..|-.+|++.+++...++.++..
T Consensus 121 kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~--~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~ 193 (363)
T PRK14961 121 KVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATT--DVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIK 193 (363)
T ss_pred eEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcC--ChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHH
Confidence 366666 3332222333 4444433223444555553 334455667666788999999999999998887754
No 160
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=37.84 E-value=6.1e+02 Score=30.97 Aligned_cols=71 Identities=14% Similarity=0.242 Sum_probs=47.9
Q ss_pred cEEEEe-CCCCCCCHHH-HHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 2 DLVITD-LHMPEMNGLE-LQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 2 DLVLlD-i~MPdmDG~e-LLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
.|+|+| ++|-....+. |++.|.+-..++.+|++|.+ ...+...+...+.-|-.|++..+++...+++++..
T Consensus 121 KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd--~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~ 193 (830)
T PRK07003 121 KVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTD--PQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGE 193 (830)
T ss_pred eEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECC--hhhccchhhhheEEEecCCcCHHHHHHHHHHHHHH
Confidence 366665 5555545555 44444333345677776654 34455677788889999999999999999988754
No 161
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=37.78 E-value=96 Score=33.37 Aligned_cols=56 Identities=11% Similarity=0.113 Sum_probs=41.3
Q ss_pred CcEEEEeCCCCC-CCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeC
Q 040406 1 IDLVITDLHMPE-MNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVK 57 (566)
Q Consensus 1 pDLVLlDi~MPd-mDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~K 57 (566)
.|+|++|..-.. ..-++.++.||+.+|. |+|+.-.-.+.+.+.+++++||+.+..-
T Consensus 109 ~d~i~~D~ahg~s~~~~~~i~~i~~~~p~-~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 109 PEYITIDIAHGHSNSVINMIKHIKTHLPD-SFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred CCEEEEeCccCchHHHHHHHHHHHHhCCC-CEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 488999986554 3346788888888854 5555554678889999999999998644
No 162
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=37.46 E-value=1e+02 Score=29.73 Aligned_cols=55 Identities=16% Similarity=0.294 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHhCCCCcE-EEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHH
Q 040406 14 NGLELQKEINEEFIHLPV-MVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQ 69 (566)
Q Consensus 14 DG~eLLe~Lr~~~p~IPV-IvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~ 69 (566)
-+++.+++|++. ...|+ +.+..++....+..+.+.|++..+.-....++....++
T Consensus 43 ~~~~~v~~i~~~-~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~ 98 (210)
T TIGR01163 43 FGPPVLEALRKY-TDLPIDVHLMVENPDRYIEDFAEAGADIITVHPEASEHIHRLLQ 98 (210)
T ss_pred cCHHHHHHHHhc-CCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCCchhHHHHHH
Confidence 578899999965 46675 32444455677888889999997776554455544443
No 163
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=37.41 E-value=1.7e+02 Score=29.54 Aligned_cols=52 Identities=15% Similarity=0.315 Sum_probs=39.1
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhc-CCcEEEe------CCCChHHHHHHH
Q 040406 16 LELQKEINEEFIHLPVMVMSSDDRESVIMKSLAS-GAVFYMV------KPVNPDALRNVW 68 (566)
Q Consensus 16 ~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~a-GA~dYL~------KP~~~eeL~~aI 68 (566)
+++++++++.. .+|||+--+-.+.+.+.++++. ||++.+. .-++.++++..+
T Consensus 186 ~~~i~~~~~~~-~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~~~~~~ 244 (253)
T PRK02083 186 LELTRAVSDAV-NVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIGELKAYL 244 (253)
T ss_pred HHHHHHHHhhC-CCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHHHHHHH
Confidence 67888888765 7999998888888888888874 9987665 335555555544
No 164
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=37.11 E-value=88 Score=33.17 Aligned_cols=60 Identities=25% Similarity=0.143 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHhCCCCcEE--EEecCCChHHHHHHHhcCCcEEEeC-----CCChHHHHHHHHHHHH
Q 040406 13 MNGLELQKEINEEFIHLPVM--VMSSDDRESVIMKSLASGAVFYMVK-----PVNPDALRNVWQYAVT 73 (566)
Q Consensus 13 mDG~eLLe~Lr~~~p~IPVI--vLSa~~d~~~~~~Al~aGA~dYL~K-----P~~~eeL~~aI~~vL~ 73 (566)
..++++++++++.. .+||| ...+-.+.+.+.++++.||+.++.= .-++.+....+..++.
T Consensus 180 ~~d~elLk~l~~~~-~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~ 246 (283)
T cd04727 180 QAPYELVKETAKLG-RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVT 246 (283)
T ss_pred CCCHHHHHHHHHhc-CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHH
Confidence 35789999998876 68997 6666668899999999999997653 2245555555544444
No 165
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=37.07 E-value=93 Score=33.90 Aligned_cols=56 Identities=18% Similarity=0.252 Sum_probs=39.6
Q ss_pred CcEEEEeCCCCCC-CHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeC
Q 040406 1 IDLVITDLHMPEM-NGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVK 57 (566)
Q Consensus 1 pDLVLlDi~MPdm-DG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~K 57 (566)
.|+|++|.---.. .-++.++.||+.+|+++||. -.-.+.+.+...+++||+...+=
T Consensus 121 vD~ivID~a~g~s~~~~~~ik~ik~~~~~~~via-GNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 121 VDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIA-GNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp -SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEE-EEE-SHHHHHHHHHTT-SEEEES
T ss_pred CCEEEccccCccHHHHHHHHHHHHHhCCCceEEe-cccCCHHHHHHHHHcCCCEEEEe
Confidence 4899999765443 34678999999999888874 33456677788899999987664
No 166
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=36.91 E-value=1.2e+02 Score=30.14 Aligned_cols=65 Identities=14% Similarity=0.225 Sum_probs=42.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 040406 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVT 73 (566)
Q Consensus 2 DLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~ 73 (566)
|++|+=....+.-+..+++.+.. .+|||+. ... ...+.+..+..+++.++.+.++|.+++..++.
T Consensus 264 d~~i~ps~~~e~~~~~~~Ea~a~---G~Pvi~~-~~~---~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 328 (359)
T cd03823 264 DVLVVPSIWPENFPLVIREALAA---GVPVIAS-DIG---GMAELVRDGVNGLLFPPGDAEDLAAALERLID 328 (359)
T ss_pred CEEEEcCcccCCCChHHHHHHHC---CCCEEEC-CCC---CHHHHhcCCCcEEEECCCCHHHHHHHHHHHHh
Confidence 45544322233455667777653 6788763 222 23345667778999999999999999998875
No 167
>PRK03975 tfx putative transcriptional regulator; Provisional
Probab=36.77 E-value=16 Score=34.83 Aligned_cols=91 Identities=16% Similarity=0.172 Sum_probs=56.2
Q ss_pred CCchHHHHHHhhhccCCchhHHHHhhhccccccccccccccccccccchhhhhhhhchhhhhHHHHHHHHh-------cc
Q 040406 91 GSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENAAAPKKAKVVWTNSLHNRFLQAIRHI-------TL 163 (566)
Q Consensus 91 ~lS~re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~~lekl~~~s~KKarL~WTsELHeKFLaAIgKL-------Gl 163 (566)
.+++++++++.....|.+..+|++...++..+++...+....++...... | +|+.+++.- |-
T Consensus 6 ~Lt~rqreVL~lr~~GlTq~EIAe~LGiS~~tVs~ie~ra~kkLr~~~~t---------l--~~~~~l~a~~~v~~~~G~ 74 (141)
T PRK03975 6 FLTERQIEVLRLRERGLTQQEIADILGTSRANVSSIEKRARENIEKARET---------L--AFAETLNAPVRVTIPAGT 74 (141)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH---------H--HHHHHcCCCeEEEecCCC
Confidence 47889999999899999999999999998877776665443332211111 1 222222221 21
Q ss_pred cc-hhHHHHHHhcCCCC----CCHHHHHHHHHHH
Q 040406 164 EK-AVPKKILEFMNVPG----LTRENVASHLQKY 192 (566)
Q Consensus 164 EK-AIPKrILElMnvpG----LTrEEVaSHLQKy 192 (566)
|- .+|+.|.+.-.+.| .+.-++...+..+
T Consensus 75 d~~~ip~~v~~~~d~~~ikv~~~~~~l~~~i~~~ 108 (141)
T PRK03975 75 DLFDIPKRIYKEADEAGIKVPYDTPELINFIREA 108 (141)
T ss_pred cHHHhHHHHHHHhhHcCCeeccCHHHHHHHHHHh
Confidence 11 57899988777666 2444444444444
No 168
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=36.76 E-value=1.3e+02 Score=28.79 Aligned_cols=58 Identities=16% Similarity=0.228 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHhCCCCcEEEE--ecCCChHHHHHHHhcCCcEEEeCCCCh-HHHHHHHHH
Q 040406 13 MNGLELQKEINEEFIHLPVMVM--SSDDRESVIMKSLASGAVFYMVKPVNP-DALRNVWQY 70 (566)
Q Consensus 13 mDG~eLLe~Lr~~~p~IPVIvL--Sa~~d~~~~~~Al~aGA~dYL~KP~~~-eeL~~aI~~ 70 (566)
..|+++++.+++..+++||++. ........+..+.++||+..+.-.... +.+.+.++.
T Consensus 38 ~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~ 98 (202)
T cd04726 38 SEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAPLSTIKKAVKA 98 (202)
T ss_pred HhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHH
Confidence 3468899999988778888763 233333346778899999877654332 334444443
No 169
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.70 E-value=4.1e+02 Score=31.33 Aligned_cols=71 Identities=13% Similarity=0.207 Sum_probs=39.0
Q ss_pred cEEEEe-CCCCCCCHHH-HHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 2 DLVITD-LHMPEMNGLE-LQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 2 DLVLlD-i~MPdmDG~e-LLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
.|||+| +++-..+... |++.|.+-.+.+.+|++|.. ...+...+...+..|-.||++.++|...|+.++..
T Consensus 121 kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~--~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~ 193 (624)
T PRK14959 121 KVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTE--PHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGR 193 (624)
T ss_pred eEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCC--hhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHH
Confidence 366776 3332223333 33333322223344444432 33333455556677888999999999988887653
No 170
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=36.40 E-value=1.2e+02 Score=29.94 Aligned_cols=53 Identities=21% Similarity=0.219 Sum_probs=39.4
Q ss_pred EEEEeCCCCCC---CHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEe
Q 040406 3 LVITDLHMPEM---NGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV 56 (566)
Q Consensus 3 LVLlDi~MPdm---DG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~ 56 (566)
+++.|+..-+. --+++++++++.. ++|||+-.+-.+.+.+.++++.||++++.
T Consensus 163 iii~~~~~~g~~~g~~~~~i~~i~~~~-~ipvi~~GGi~~~~di~~~~~~Ga~gv~v 218 (234)
T cd04732 163 IIYTDISRDGTLSGPNFELYKELAAAT-GIPVIASGGVSSLDDIKALKELGVAGVIV 218 (234)
T ss_pred EEEEeecCCCccCCCCHHHHHHHHHhc-CCCEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence 45666543221 2368888888765 78999988888888888999999999765
No 171
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=36.35 E-value=1.4e+02 Score=31.37 Aligned_cols=57 Identities=19% Similarity=0.241 Sum_probs=46.4
Q ss_pred HHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEE-----eCCCChHHHHHHHHHHHHh
Q 040406 17 ELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYM-----VKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 17 eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL-----~KP~~~eeL~~aI~~vL~~ 74 (566)
..++.|++. +++|||+=.+-...+++..|++.|+++.+ .|--++.++..+++.+++.
T Consensus 179 ~~l~~i~e~-~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV~A 240 (267)
T CHL00162 179 LNLQIIIEN-AKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAVQA 240 (267)
T ss_pred HHHHHHHHc-CCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHHHHH
Confidence 566777766 47999999999999999999999999965 4667788888888877654
No 172
>smart00421 HTH_LUXR helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon
Probab=35.58 E-value=32 Score=25.40 Aligned_cols=43 Identities=12% Similarity=0.076 Sum_probs=32.3
Q ss_pred CCchHHHHHHhhhccCCchhHHHHhhhcccccccccccccccc
Q 040406 91 GSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEG 133 (566)
Q Consensus 91 ~lS~re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~~lek 133 (566)
.++.++..++..+..|.+..+|+....++..++..+.+....+
T Consensus 3 ~l~~~e~~i~~~~~~g~s~~eia~~l~is~~tv~~~~~~~~~k 45 (58)
T smart00421 3 SLTPREREVLRLLAEGLTNKEIAERLGISEKTVKTHLSNIMRK 45 (58)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3566777777778899999999999888888777665544333
No 173
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=35.49 E-value=1.9e+02 Score=29.23 Aligned_cols=65 Identities=20% Similarity=0.169 Sum_probs=45.8
Q ss_pred EEEEeCC-CC-C-CCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeC--CCChHHHHHHH
Q 040406 3 LVITDLH-MP-E-MNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVK--PVNPDALRNVW 68 (566)
Q Consensus 3 LVLlDi~-MP-d-mDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~K--P~~~eeL~~aI 68 (566)
++++|+. +- + ..-+++++++.+. ..+||++=-+-.+.+.+.+++..|++..+.- -++++.+.++.
T Consensus 46 l~ivDldga~~g~~~n~~~i~~i~~~-~~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~~~~~l~~~~ 115 (228)
T PRK04128 46 IHVVDLDGAFEGKPKNLDVVKNIIRE-TGLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAFDLEFLEKVT 115 (228)
T ss_pred EEEEECcchhcCCcchHHHHHHHHhh-CCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhcCHHHHHHHH
Confidence 6777876 22 2 2458899998876 4789998777888899999999999986653 24444444433
No 174
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=35.25 E-value=1.4e+02 Score=31.84 Aligned_cols=53 Identities=15% Similarity=0.152 Sum_probs=43.2
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHH
Q 040406 16 LELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQY 70 (566)
Q Consensus 16 ~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~ 70 (566)
.+.++++|...|..+|.+=. ++.+.+.+|+++||+-.+.--+++++++++++.
T Consensus 196 ~~av~~~r~~~~~~kIeVEv--~sleea~ea~~~gaDiI~LDn~s~e~~~~av~~ 248 (296)
T PRK09016 196 RQAVEKAFWLHPDVPVEVEV--ENLDELDQALKAGADIIMLDNFTTEQMREAVKR 248 (296)
T ss_pred HHHHHHHHHhCCCCCEEEEe--CCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHh
Confidence 46777788778888865533 357888999999999999999999999999984
No 175
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=35.12 E-value=1.2e+02 Score=29.86 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=39.9
Q ss_pred EEEEeCCCCCC-CH--HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEe
Q 040406 3 LVITDLHMPEM-NG--LELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV 56 (566)
Q Consensus 3 LVLlDi~MPdm-DG--~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~ 56 (566)
+++.|+.--++ .| +++++++++. .++|||+-.+-.+.+.+.++++.||++++.
T Consensus 162 ii~~~~~~~g~~~g~~~~~i~~i~~~-~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 162 IIYTDISRDGTLSGPNFELTKELVKA-VNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred EEEEeecCCCCcCCCCHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 56666643321 12 6888888876 478999888888888888899999999776
No 176
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=34.73 E-value=2.3e+02 Score=28.26 Aligned_cols=61 Identities=3% Similarity=0.064 Sum_probs=40.9
Q ss_pred EEeCCCCCCCHHHHHHHHHHhCCCCcEEE-EecCCChHHHHHHHhcCCcEEEeCCCChHHHHHH
Q 040406 5 ITDLHMPEMNGLELQKEINEEFIHLPVMV-MSSDDRESVIMKSLASGAVFYMVKPVNPDALRNV 67 (566)
Q Consensus 5 LlDi~MPdmDG~eLLe~Lr~~~p~IPVIv-LSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~a 67 (566)
++.+.+-.-++.+.++.|+++++. ++++ .-.--+.+.+..|+++||+..++ |....++.+.
T Consensus 38 ~iEvt~~~~~~~~~i~~l~~~~~~-~~~iGaGTV~~~~~~~~a~~aGA~fivs-p~~~~~v~~~ 99 (206)
T PRK09140 38 AIEIPLNSPDPFDSIAALVKALGD-RALIGAGTVLSPEQVDRLADAGGRLIVT-PNTDPEVIRR 99 (206)
T ss_pred EEEEeCCCccHHHHHHHHHHHcCC-CcEEeEEecCCHHHHHHHHHcCCCEEEC-CCCCHHHHHH
Confidence 466777778899999999988864 3332 22234567788999999965555 6544455444
No 177
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=34.65 E-value=2.6e+02 Score=28.42 Aligned_cols=52 Identities=17% Similarity=0.362 Sum_probs=38.9
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcC-CcEEEe------CCCChHHHHHHH
Q 040406 16 LELQKEINEEFIHLPVMVMSSDDRESVIMKSLASG-AVFYMV------KPVNPDALRNVW 68 (566)
Q Consensus 16 ~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aG-A~dYL~------KP~~~eeL~~aI 68 (566)
+++++++++.. .+|||+.-+-.+.+.+.++++.| |+..+. +-++.+++++.+
T Consensus 188 ~~~~~~i~~~~-~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~ 246 (254)
T TIGR00735 188 LELTKAVSEAV-KIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYL 246 (254)
T ss_pred HHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHH
Confidence 68888888775 79999999999999999999988 887443 234555554443
No 178
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=34.35 E-value=59 Score=30.58 Aligned_cols=68 Identities=13% Similarity=0.195 Sum_probs=40.5
Q ss_pred CcEEEEeCCCCCCCHHHHHH-HHHHhCCCCc-EEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQK-EINEEFIHLP-VMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVW 68 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe-~Lr~~~p~IP-VIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI 68 (566)
||++|+.+-.+-..-..+.+ ++.+...-.- ||+--.......+.+..+.|+.++|.||++...|...+
T Consensus 52 YD~~Ll~vavtfr~n~tm~~~~l~~Al~mtd~vilalPs~~qv~AeqLkQ~g~~~CllKPls~~rLlptl 121 (140)
T COG4999 52 YDMMLLGVAVTFRENLTMQHERLAKALSMTDFVILALPSHAQVNAEQLKQDGAGACLLKPLSSTRLLPTL 121 (140)
T ss_pred hceeeecccccccCCchHHHHHHHHHHhhhcceEEecCcHHHHhHHHHhhcchHhHhhCcchhhhhHHHH
Confidence 68888888776544443332 2222211112 23222233344566778899999999999998887743
No 179
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=34.30 E-value=1e+02 Score=31.88 Aligned_cols=56 Identities=13% Similarity=0.162 Sum_probs=40.1
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEE------eCCCChHHHHHHHHHHH
Q 040406 16 LELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYM------VKPVNPDALRNVWQYAV 72 (566)
Q Consensus 16 ~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL------~KP~~~eeL~~aI~~vL 72 (566)
+++++++++.. ++|||....-.+.+.+.+++.+||+... .-|.-..++++-+.+.+
T Consensus 220 ~~~i~~i~~~~-~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~~l~~~~ 281 (296)
T cd04740 220 LRMVYQVYKAV-EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFKEIIEGLEAYL 281 (296)
T ss_pred HHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHHHHHHHH
Confidence 57888888765 7999999998899999999999987632 23444444444444444
No 180
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=33.93 E-value=1.6e+02 Score=31.26 Aligned_cols=54 Identities=17% Similarity=0.130 Sum_probs=43.9
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 040406 16 LELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYA 71 (566)
Q Consensus 16 ~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~v 71 (566)
.+.++++|+..+..+|.+-. ++.+.+.+|++.||+..+.--++++++++++..+
T Consensus 187 ~~ai~~~r~~~~~~kIeVEv--~tl~ea~eal~~gaDiI~LDnm~~e~vk~av~~~ 240 (289)
T PRK07896 187 VAALRAVRAAAPDLPCEVEV--DSLEQLDEVLAEGAELVLLDNFPVWQTQEAVQRR 240 (289)
T ss_pred HHHHHHHHHhCCCCCEEEEc--CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 46778888877777866544 4567888999999999999999999999998843
No 181
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=33.86 E-value=1.8e+02 Score=28.69 Aligned_cols=43 Identities=21% Similarity=0.225 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeC
Q 040406 14 NGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVK 57 (566)
Q Consensus 14 DG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~K 57 (566)
..+++++++++.. ++||++.-+-...+.+.+++..||++.+.-
T Consensus 143 ~~~~~i~~i~~~~-~~Pvi~~GGI~~~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 143 GTFALVPEVRDAV-DIPVIAAGGIADGRGIAAALALGADGVQMG 185 (236)
T ss_pred CHHHHHHHHHHHh-CCCEEEECCCCCHHHHHHHHHcCCcEEEEc
Confidence 4577888888765 789999888777788889999999987764
No 182
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=33.23 E-value=1.4e+02 Score=31.02 Aligned_cols=53 Identities=15% Similarity=0.214 Sum_probs=41.0
Q ss_pred HHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHH
Q 040406 17 ELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQY 70 (566)
Q Consensus 17 eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~ 70 (566)
..++.+|+..+.-..|-++.+. .+.+.+|++.||+....-|+.+++|+++++.
T Consensus 170 ~~v~~~r~~~~~~~~Igvev~s-~eea~~A~~~gaDyI~ld~~~~e~l~~~~~~ 222 (268)
T cd01572 170 EAVRRARAAAPFTLKIEVEVET-LEQLKEALEAGADIIMLDNMSPEELREAVAL 222 (268)
T ss_pred HHHHHHHHhCCCCCeEEEEECC-HHHHHHHHHcCCCEEEECCcCHHHHHHHHHH
Confidence 3567778877644556666654 4677889999999998999999999888764
No 183
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=33.22 E-value=1.3e+02 Score=29.96 Aligned_cols=53 Identities=19% Similarity=0.216 Sum_probs=38.9
Q ss_pred EEEEeCCCC---CCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEe
Q 040406 3 LVITDLHMP---EMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV 56 (566)
Q Consensus 3 LVLlDi~MP---dmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~ 56 (566)
+++.|+... ..-.+++++++++.. ++|||+..+-.+.+.+.++...||+..+.
T Consensus 166 i~~~~~~~~g~~~g~~~~~i~~i~~~~-~iPvia~GGI~~~~di~~~~~~Ga~gv~v 221 (241)
T PRK13585 166 ILFTNVDVEGLLEGVNTEPVKELVDSV-DIPVIASGGVTTLDDLRALKEAGAAGVVV 221 (241)
T ss_pred EEEEeecCCCCcCCCCHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 455565321 123468888888876 69999988888888888888999998654
No 184
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=33.13 E-value=1.7e+02 Score=33.72 Aligned_cols=68 Identities=15% Similarity=0.249 Sum_probs=50.1
Q ss_pred cEEEEeCCCCC-CCH--HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHh-cCCcE------EEeCCCChHHHHHHHHH
Q 040406 2 DLVITDLHMPE-MNG--LELQKEINEEFIHLPVMVMSSDDRESVIMKSLA-SGAVF------YMVKPVNPDALRNVWQY 70 (566)
Q Consensus 2 DLVLlDi~MPd-mDG--~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~-aGA~d------YL~KP~~~eeL~~aI~~ 70 (566)
.|++.|+...+ +.| +++++.+++.. .+|||+-.+....+.+.++++ .+|+. |..+-++..+++..++.
T Consensus 454 eil~t~id~DGt~~G~d~~l~~~v~~~~-~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~~~~~~~~k~~l~~ 531 (538)
T PLN02617 454 EILLNCIDCDGQGKGFDIELVKLVSDAV-TIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHRKEVPISSVKEHLLE 531 (538)
T ss_pred EEEEeeccccccccCcCHHHHHHHHhhC-CCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeeccCCCCHHHHHHHHHH
Confidence 37788887665 345 56788888764 899999999999999999987 44554 44566777777776653
No 185
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=33.02 E-value=1.1e+02 Score=29.79 Aligned_cols=65 Identities=14% Similarity=0.139 Sum_probs=41.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 040406 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVT 73 (566)
Q Consensus 2 DLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~ 73 (566)
|++|+-... +.-|..+++.+.. .+|||+....... ...+..+..+++.++.+.+++.+.|.+++.
T Consensus 254 d~~i~ps~~-e~~~~~~~Ea~a~---G~Pvi~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~ 318 (348)
T cd03820 254 SIFVLTSRF-EGFPMVLLEAMAF---GLPVISFDCPTGP---SEIIEDGVNGLLVPNGDVEALAEALLRLME 318 (348)
T ss_pred CEEEeCccc-cccCHHHHHHHHc---CCCEEEecCCCch---HhhhccCcceEEeCCCCHHHHHHHHHHHHc
Confidence 455554433 2235566666643 7788764322222 233456678899999999999999998864
No 186
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=32.84 E-value=1.4e+02 Score=29.56 Aligned_cols=53 Identities=19% Similarity=0.271 Sum_probs=39.8
Q ss_pred EEEEeCCCCC-CCH--HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcC-CcEEEe
Q 040406 3 LVITDLHMPE-MNG--LELQKEINEEFIHLPVMVMSSDDRESVIMKSLASG-AVFYMV 56 (566)
Q Consensus 3 LVLlDi~MPd-mDG--~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aG-A~dYL~ 56 (566)
+++.|+..-+ ..| +++++++++.. .+|||.-.+-.+.+.+.++++.| |++.+.
T Consensus 163 ii~~~~~~~g~~~G~d~~~i~~l~~~~-~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 163 IIYTDISRDGTLSGPNVEATRELAAAV-PIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred EEEeeecCcCCcCCCCHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 5666664332 233 68888888775 58999988888888999999988 888775
No 187
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=32.44 E-value=1.7e+02 Score=30.83 Aligned_cols=53 Identities=9% Similarity=0.125 Sum_probs=43.1
Q ss_pred HHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 040406 17 ELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYA 71 (566)
Q Consensus 17 eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~v 71 (566)
+.++.+|+..+..+|.+ ...+.+.+.+++++||+-.+.--+++++++++++.+
T Consensus 177 ~av~~~r~~~~~~kIeV--Ev~tleea~ea~~~GaDiI~lDn~~~e~l~~~v~~l 229 (277)
T TIGR01334 177 GAIGRLKQTAPERKITV--EADTIEQALTVLQASPDILQLDKFTPQQLHHLHERL 229 (277)
T ss_pred HHHHHHHHhCCCCCEEE--ECCCHHHHHHHHHcCcCEEEECCCCHHHHHHHHHHH
Confidence 57788888777766443 334778889999999999999999999999999864
No 188
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=32.13 E-value=76 Score=28.28 Aligned_cols=54 Identities=11% Similarity=0.103 Sum_probs=35.1
Q ss_pred HHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCC--hHHHHHHHHHH
Q 040406 17 ELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN--PDALRNVWQYA 71 (566)
Q Consensus 17 eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~--~eeL~~aI~~v 71 (566)
...+.|.+..|.+|||++|...... ..-++-.|+.-++.++.. .+++.......
T Consensus 28 ~ta~~isk~RP~~pIiavt~~~~~~-r~l~l~~GV~p~~~~~~~~~~~~~~~~a~~~ 83 (117)
T PF02887_consen 28 RTARLISKYRPKVPIIAVTPNESVA-RQLSLYWGVYPVLIEEFDKDTEELIAEALEY 83 (117)
T ss_dssp HHHHHHHHT-TSSEEEEEESSHHHH-HHGGGSTTEEEEECSSHSHSHHHHHHHHHHH
T ss_pred hHHHHHHhhCCCCeEEEEcCcHHHH-hhhhcccceEEEEeccccccHHHHHHHHHHH
Confidence 3456677777999999999875432 223467899998888765 45444444333
No 189
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.13 E-value=7.3e+02 Score=28.12 Aligned_cols=70 Identities=11% Similarity=0.147 Sum_probs=41.5
Q ss_pred EEEEe-CCCCCCCHHHHH-HHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 3 LVITD-LHMPEMNGLELQ-KEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 3 LVLlD-i~MPdmDG~eLL-e~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
|||+| +++-..++++.+ +.|..-.+++-+|+.| .+...+..++...+.-+-.+|++.+++...++.+++.
T Consensus 122 VvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~t--t~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~ 193 (486)
T PRK14953 122 VYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCT--TEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNE 193 (486)
T ss_pred EEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEE--CCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHH
Confidence 66666 444444444433 3333322233334444 2344455566666778888999999999999887754
No 190
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.04 E-value=9e+02 Score=28.45 Aligned_cols=71 Identities=14% Similarity=0.251 Sum_probs=44.3
Q ss_pred cEEEEe-CCCCCCCHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 2 DLVITD-LHMPEMNGLELQKEINEEFI-HLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 2 DLVLlD-i~MPdmDG~eLLe~Lr~~~p-~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
.|+|+| ++|-..+.+..+.+.-++.| .+.+|++|.+ ...+...+...+.-|-.|+++.+++...+++++..
T Consensus 126 KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd--~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~ 198 (618)
T PRK14951 126 KVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTD--PQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAA 198 (618)
T ss_pred eEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECC--chhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHH
Confidence 466666 55544445544333333333 3455555533 33344557777888999999999999999888754
No 191
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=31.96 E-value=1.4e+02 Score=28.94 Aligned_cols=54 Identities=19% Similarity=0.080 Sum_probs=40.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeC
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVK 57 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~K 57 (566)
+|+|-++- .+.. |.++++.++...+.+|++.+-+- +.+.+.+.++.|++....-
T Consensus 118 ad~i~~~p-~~~~-g~~~~~~l~~~~~~~p~~a~GGI-~~~n~~~~~~~G~~~v~v~ 171 (190)
T cd00452 118 ADIVKLFP-AEAV-GPAYIKALKGPFPQVRFMPTGGV-SLDNAAEWLAAGVVAVGGG 171 (190)
T ss_pred CCEEEEcC-Cccc-CHHHHHHHHhhCCCCeEEEeCCC-CHHHHHHHHHCCCEEEEEc
Confidence 36666642 2333 89999999988888998887776 6778889999998876554
No 192
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=31.73 E-value=1.6e+02 Score=29.66 Aligned_cols=54 Identities=22% Similarity=0.187 Sum_probs=42.8
Q ss_pred EEEEeCCCCCC-C--HHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeC
Q 040406 3 LVITDLHMPEM-N--GLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVK 57 (566)
Q Consensus 3 LVLlDi~MPdm-D--G~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~K 57 (566)
+|++|+.--++ . .+++++++++.. .+|||+--+-.+.+.+.++.+.||+..+.-
T Consensus 157 ii~tdI~~dGt~~G~d~eli~~i~~~~-~~pvia~GGi~s~ed~~~l~~~Ga~~vivg 213 (221)
T TIGR00734 157 LIVLDIHSVGTMKGPNLELLTKTLELS-EHPVMLGGGISGVEDLELLKEMGVSAVLVA 213 (221)
T ss_pred EEEEECCccccCCCCCHHHHHHHHhhC-CCCEEEeCCCCCHHHHHHHHHCCCCEEEEh
Confidence 67888876442 3 378999998875 799998888888888888888999987763
No 193
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.70 E-value=3.8e+02 Score=30.62 Aligned_cols=71 Identities=15% Similarity=0.129 Sum_probs=47.7
Q ss_pred EEEEe-CCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 3 LVITD-LHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 3 LVLlD-i~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
|+|+| ++|-..+.++.+-..-++ |...++++-+..+...+...+...+..|-.||++.+++...+++++..
T Consensus 124 V~IIDEah~Ls~~A~NALLKtLEE-Pp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~ 195 (484)
T PRK14956 124 VYIIDEVHMLTDQSFNALLKTLEE-PPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKI 195 (484)
T ss_pred EEEEechhhcCHHHHHHHHHHhhc-CCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHH
Confidence 56665 555555555544222233 334555554444566667788888999999999999999999988754
No 194
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=31.55 E-value=2.1e+02 Score=25.90 Aligned_cols=66 Identities=17% Similarity=0.216 Sum_probs=43.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhh
Q 040406 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSK 75 (566)
Q Consensus 2 DLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~ 75 (566)
|++|+=... +.-|..+++.+.. .+|||+ +.. ....+.+..+..+++..+.+.++|.++|.+++...
T Consensus 94 di~v~~s~~-e~~~~~~~Ea~~~---g~pvI~-~~~---~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~ 159 (172)
T PF00534_consen 94 DIFVSPSRN-EGFGLSLLEAMAC---GCPVIA-SDI---GGNNEIINDGVNGFLFDPNDIEELADAIEKLLNDP 159 (172)
T ss_dssp SEEEE-BSS-BSS-HHHHHHHHT---T-EEEE-ESS---THHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHH
T ss_pred eeccccccc-ccccccccccccc---ccceee-ccc---cCCceeeccccceEEeCCCCHHHHHHHHHHHHCCH
Confidence 444443333 4445667776653 667774 332 33346677888999999999999999999988653
No 195
>PRK07695 transcriptional regulator TenI; Provisional
Probab=31.46 E-value=2.8e+02 Score=26.98 Aligned_cols=38 Identities=24% Similarity=0.319 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEE
Q 040406 15 GLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFY 54 (566)
Q Consensus 15 G~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dY 54 (566)
|++.++.+++.. .+||+++-+- +.+.+.++++.|++.+
T Consensus 137 g~~~l~~~~~~~-~ipvia~GGI-~~~~~~~~~~~Ga~gv 174 (201)
T PRK07695 137 GLEELSDIARAL-SIPVIAIGGI-TPENTRDVLAAGVSGI 174 (201)
T ss_pred CHHHHHHHHHhC-CCCEEEEcCC-CHHHHHHHHHcCCCEE
Confidence 678888887765 6999988777 6778888999999886
No 196
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=31.23 E-value=1.1e+02 Score=30.00 Aligned_cols=43 Identities=9% Similarity=0.072 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhC-CCCcEEEEecCCChHHHHHHHhcCCcEEEeC
Q 040406 15 GLELQKEINEEF-IHLPVMVMSSDDRESVIMKSLASGAVFYMVK 57 (566)
Q Consensus 15 G~eLLe~Lr~~~-p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~K 57 (566)
.+++++++++.. .++|||...+-...+.+.++++.||++++.-
T Consensus 158 ~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivG 201 (217)
T cd00331 158 DLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIG 201 (217)
T ss_pred CHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEEC
Confidence 357788888775 4789999999999899999999999997753
No 197
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=31.17 E-value=71 Score=33.15 Aligned_cols=57 Identities=23% Similarity=0.227 Sum_probs=41.3
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeC-----CCChHHHHHHHHHHHH
Q 040406 16 LELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVK-----PVNPDALRNVWQYAVT 73 (566)
Q Consensus 16 ~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~K-----P~~~eeL~~aI~~vL~ 73 (566)
-..++.|+++. ++|||+=.+-.....+..|++.|++..|.- --++....++.+.++.
T Consensus 164 ~~~l~~i~~~~-~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~~AV~ 225 (247)
T PF05690_consen 164 PYNLRIIIERA-DVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFKLAVE 225 (247)
T ss_dssp HHHHHHHHHHG-SSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHHHHHH
Confidence 46788888877 999999999999999999999999999874 3455555555555543
No 198
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.06 E-value=1.8e+02 Score=30.95 Aligned_cols=53 Identities=11% Similarity=0.034 Sum_probs=41.6
Q ss_pred HHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHH
Q 040406 16 LELQKEINEEFI-HLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQY 70 (566)
Q Consensus 16 ~eLLe~Lr~~~p-~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~ 70 (566)
.+.++++|+..+ ..+|.+ ..++.+.+.+|+++||+-.+.--++++++++++..
T Consensus 184 ~~av~~~r~~~~~~~kIeV--Ev~tleea~~a~~agaDiImLDnmspe~l~~av~~ 237 (290)
T PRK06559 184 QKAIAQARAYAPFVKMVEV--EVESLAAAEEAAAAGADIIMLDNMSLEQIEQAITL 237 (290)
T ss_pred HHHHHHHHHhCCCCCeEEE--ECCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Confidence 456777777776 344433 33567888999999999999999999999999974
No 199
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=31.02 E-value=1.6e+02 Score=31.12 Aligned_cols=56 Identities=18% Similarity=0.214 Sum_probs=41.8
Q ss_pred CcEEEEeCCC-----CCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeC
Q 040406 1 IDLVITDLHM-----PEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVK 57 (566)
Q Consensus 1 pDLVLlDi~M-----PdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~K 57 (566)
+|.|++.-.- ....-++++.++++.. ++|||+--+-.+...+.+++..||++...=
T Consensus 130 aD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~-~iPviaaGGI~~~~~~~~al~~GA~gV~iG 190 (307)
T TIGR03151 130 ADAVIAEGMESGGHIGELTTMALVPQVVDAV-SIPVIAAGGIADGRGMAAAFALGAEAVQMG 190 (307)
T ss_pred CCEEEEECcccCCCCCCCcHHHHHHHHHHHh-CCCEEEECCCCCHHHHHHHHHcCCCEeecc
Confidence 3666664321 1234588999998766 699998888888888999999999986654
No 200
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=30.90 E-value=1e+02 Score=32.05 Aligned_cols=58 Identities=10% Similarity=0.161 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcE------EEeCCCChHHHHHHHHHHHH
Q 040406 15 GLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVF------YMVKPVNPDALRNVWQYAVT 73 (566)
Q Consensus 15 G~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~d------YL~KP~~~eeL~~aI~~vL~ 73 (566)
.++.++++++.. ++|||....-.+.+.+.+++.+||+. ++..|.-+.++++-+++.+.
T Consensus 222 ~l~~v~~i~~~~-~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l~~~~~ 285 (301)
T PRK07259 222 ALRMVYQVYQAV-DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGLEAYLD 285 (301)
T ss_pred cHHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHHHHHHH
Confidence 367888888766 79999999999999999999999865 23345444555555544443
No 201
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=30.79 E-value=1.5e+02 Score=33.00 Aligned_cols=65 Identities=12% Similarity=0.167 Sum_probs=43.6
Q ss_pred CcEEEEeCCCCCC-CHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHh-cCCcEEEeCCCChHHHHH
Q 040406 1 IDLVITDLHMPEM-NGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLA-SGAVFYMVKPVNPDALRN 66 (566)
Q Consensus 1 pDLVLlDi~MPdm-DG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~-aGA~dYL~KP~~~eeL~~ 66 (566)
||||.+-...+.. ..+++++.+|+..|+++||+--.+..... .++++ ....||++.---...|.+
T Consensus 69 ~Dlv~is~~t~~~~~~~~ia~~iK~~~p~~~vv~GG~h~t~~p-e~~l~~~~~vD~Vv~GEgE~~l~~ 135 (472)
T TIGR03471 69 YDLVVLHTSTPSFPSDVKTAEALKEQNPATKIGFVGAHVAVLP-EKTLKQGPAIDFVCRREFDYTIKE 135 (472)
T ss_pred CCEEEEECCCcchHHHHHHHHHHHHhCCCCEEEEECCCcccCH-HHHHhcCCCeeEEEeCchHHHHHH
Confidence 6888887766654 46889999999999998887666544322 24444 356788888644444433
No 202
>PF06073 DUF934: Bacterial protein of unknown function (DUF934); InterPro: IPR008318 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=30.18 E-value=2.6e+02 Score=25.62 Aligned_cols=67 Identities=9% Similarity=0.127 Sum_probs=47.6
Q ss_pred EEEeCCCC---CCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCC-CChHHHHHHHHH
Q 040406 4 VITDLHMP---EMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKP-VNPDALRNVWQY 70 (566)
Q Consensus 4 VLlDi~MP---dmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP-~~~eeL~~aI~~ 70 (566)
-++.+..| |.-|+...+.||++.--.--|-.+++--.+.+.-..+.|++.|.++. .+.+...+.+..
T Consensus 21 ~lI~i~FP~F~DGRgfS~ArlLR~r~gy~GelRA~Gdvl~DQl~~l~R~GFdsf~l~~~~~~~~~~~~l~~ 91 (110)
T PF06073_consen 21 PLIAIDFPKFTDGRGFSQARLLRERYGYTGELRAVGDVLRDQLFYLRRCGFDSFELREDQDPEDALAALSD 91 (110)
T ss_pred CEEEEECCCcCCchHhHHHHHHHHHcCCCCcEEEeccchHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHhh
Confidence 35555666 46789999999976544445666777667777788899999999985 555555555443
No 203
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=29.80 E-value=1.9e+02 Score=30.05 Aligned_cols=54 Identities=15% Similarity=0.176 Sum_probs=41.1
Q ss_pred HHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 040406 17 ELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYA 71 (566)
Q Consensus 17 eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~v 71 (566)
..++.+|+..+.-..|.++.+ +.+.+.+|+..||+-...-|+.+++++++++.+
T Consensus 169 ~~v~~~r~~~~~~~~I~vev~-t~eea~~A~~~gaD~I~ld~~~~e~l~~~v~~i 222 (269)
T cd01568 169 EAVKRARAAAPFEKKIEVEVE-TLEEAEEALEAGADIIMLDNMSPEELKEAVKLL 222 (269)
T ss_pred HHHHHHHHhCCCCCeEEEecC-CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 356778887764445666665 457778899999999999999999998877643
No 204
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=29.73 E-value=2.2e+02 Score=30.25 Aligned_cols=56 Identities=13% Similarity=0.130 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 040406 15 GLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYA 71 (566)
Q Consensus 15 G~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~v 71 (566)
--+.++++|...|..+.|=+- .+..+.+.+|+++||+-.+.--+++++++++++..
T Consensus 174 i~~Av~~aR~~~~~~~kIEVE-vesle~~~eAl~agaDiImLDNm~~e~~~~av~~l 229 (280)
T COG0157 174 ITEAVRRARAAAPFTKKIEVE-VESLEEAEEALEAGADIIMLDNMSPEELKEAVKLL 229 (280)
T ss_pred HHHHHHHHHHhCCCCceEEEE-cCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHh
Confidence 345778888877777655443 35677888999999999999999999999999875
No 205
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=29.05 E-value=71 Score=34.24 Aligned_cols=57 Identities=14% Similarity=0.211 Sum_probs=40.8
Q ss_pred HHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHhcCCcE------EEeC-CCChHHHHHHHHHHH
Q 040406 16 LELQKEINEEFI-HLPVMVMSSDDRESVIMKSLASGAVF------YMVK-PVNPDALRNVWQYAV 72 (566)
Q Consensus 16 ~eLLe~Lr~~~p-~IPVIvLSa~~d~~~~~~Al~aGA~d------YL~K-P~~~eeL~~aI~~vL 72 (566)
++.++++++... ++|||.+.+-.+.+.+.+.+.+||+. ++.+ |.-..++.+-+++.+
T Consensus 276 l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~~L~~~l 340 (344)
T PRK05286 276 TEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGLARLL 340 (344)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 446677776643 69999999999999999999999875 3444 655555555555544
No 206
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=28.91 E-value=2.4e+02 Score=29.40 Aligned_cols=53 Identities=11% Similarity=0.138 Sum_probs=40.6
Q ss_pred HHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHH
Q 040406 17 ELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQY 70 (566)
Q Consensus 17 eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~ 70 (566)
..++.+|+..+.-..|-++.+ +.+.+.+|.+.||+....-|+.+++++++++.
T Consensus 166 ~av~~~r~~~~~~~~Igvev~-t~eea~~A~~~gaDyI~ld~~~~e~lk~~v~~ 218 (265)
T TIGR00078 166 KAVKRARAAAPFALKIEVEVE-SLEEAEEAAEAGADIIMLDNMKPEEIKEAVQL 218 (265)
T ss_pred HHHHHHHHhCCCCCeEEEEeC-CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Confidence 356777777664445666665 45678899999999888999999999988775
No 207
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.81 E-value=8.7e+02 Score=27.42 Aligned_cols=35 Identities=6% Similarity=0.034 Sum_probs=28.3
Q ss_pred hHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 40 ESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 40 ~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
...+..++...+.-+-.+|++.+++...+++++..
T Consensus 157 ~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~ 191 (472)
T PRK14962 157 LEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEA 191 (472)
T ss_pred hHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHH
Confidence 44566778778888999999999999999888753
No 208
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=28.78 E-value=1.4e+02 Score=30.16 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=39.4
Q ss_pred cEEEEeCCCCC-CCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEe
Q 040406 2 DLVITDLHMPE-MNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV 56 (566)
Q Consensus 2 DLVLlDi~MPd-mDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~ 56 (566)
.+|++|+.--+ +.|++ .+.+..+++|||.--+-.+.+.+.++.+.|+++.+.
T Consensus 158 ~ii~t~i~~dGt~~G~d---~l~~~~~~~pviasGGv~~~~Dl~~l~~~g~~gviv 210 (228)
T PRK04128 158 RFIYTSIERDGTLTGIE---EIERFWGDEEFIYAGGVSSAEDVKKLAEIGFSGVII 210 (228)
T ss_pred EEEEEeccchhcccCHH---HHHHhcCCCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 36888887665 46777 444444589999988888888888888899988655
No 209
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=28.47 E-value=95 Score=29.08 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=24.1
Q ss_pred CcEEEEeCCCCCCCHH--------HHHHHHHHhCCCCcEEEEecCC
Q 040406 1 IDLVITDLHMPEMNGL--------ELQKEINEEFIHLPVMVMSSDD 38 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~--------eLLe~Lr~~~p~IPVIvLSa~~ 38 (566)
||+|++.+-.-+.... +++++|++..|.+|||+++...
T Consensus 58 pd~vii~~G~ND~~~~~~~~~~~~~~i~~i~~~~p~~~iil~~~~~ 103 (177)
T cd01844 58 ADLYIIDCGPNIVGAEAMVRERLGPLVKGLRETHPDTPILLVSPRY 103 (177)
T ss_pred CCEEEEEeccCCCccHHHHHHHHHHHHHHHHHHCcCCCEEEEecCC
Confidence 5778776544443221 3556666778888888888643
No 210
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=28.39 E-value=1.7e+02 Score=30.89 Aligned_cols=54 Identities=20% Similarity=0.209 Sum_probs=42.6
Q ss_pred HHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHH
Q 040406 17 ELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAV 72 (566)
Q Consensus 17 eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL 72 (566)
+.++.+|...+..+|.+ ..++.+.+.+|+++|++-.+.--++++++++++..+.
T Consensus 171 ~av~~~r~~~~~~kIeV--Ev~~leea~~a~~agaDiI~LDn~~~e~l~~~v~~l~ 224 (278)
T PRK08385 171 EAIRRAKEFSVYKVVEV--EVESLEDALKAAKAGADIIMLDNMTPEEIREVIEALK 224 (278)
T ss_pred HHHHHHHHhCCCCcEEE--EeCCHHHHHHHHHcCcCEEEECCCCHHHHHHHHHHHH
Confidence 46677777777777444 4457788899999999999888899999999988654
No 211
>smart00426 TEA TEA domain.
Probab=28.38 E-value=30 Score=29.16 Aligned_cols=18 Identities=22% Similarity=0.573 Sum_probs=15.2
Q ss_pred hhchhhhhHHHHHHHHhc
Q 040406 145 VWTNSLHNRFLQAIRHIT 162 (566)
Q Consensus 145 ~WTsELHeKFLaAIgKLG 162 (566)
+|..++-..|++++..+-
T Consensus 5 vWp~~lE~Af~~aL~~~~ 22 (68)
T smart00426 5 VWSPDIEQAFQEALAIYP 22 (68)
T ss_pred cCcHHHHHHHHHHHHHcC
Confidence 688899999999988773
No 212
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=28.28 E-value=5.4e+02 Score=27.30 Aligned_cols=45 Identities=18% Similarity=0.113 Sum_probs=27.9
Q ss_pred CcEEEEecCCChHHHH-HH--HhcCCcEEEeCCCChHHHHHHHHHHHH
Q 040406 29 LPVMVMSSDDRESVIM-KS--LASGAVFYMVKPVNPDALRNVWQYAVT 73 (566)
Q Consensus 29 IPVIvLSa~~d~~~~~-~A--l~aGA~dYL~KP~~~eeL~~aI~~vL~ 73 (566)
+.||+++...+..... .. -..+...+..+|++.+++..+++..++
T Consensus 174 v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~ 221 (394)
T PRK00411 174 IGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVE 221 (394)
T ss_pred EEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHH
Confidence 4466666654322211 11 123445678899999999999987764
No 213
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=28.25 E-value=2.1e+02 Score=30.36 Aligned_cols=54 Identities=26% Similarity=0.246 Sum_probs=41.9
Q ss_pred HHHHHHHHHhCCC-CcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 040406 16 LELQKEINEEFIH-LPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYA 71 (566)
Q Consensus 16 ~eLLe~Lr~~~p~-IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~v 71 (566)
.+.++++|+..+. .+|.+ ..++.+.+.+|+++||+-.+.--++++++++++..+
T Consensus 180 ~~av~~~r~~~~~~~kIeV--Ev~slee~~ea~~~gaDiImLDn~s~e~l~~av~~~ 234 (281)
T PRK06543 180 TEALRHVRAQLGHTTHVEV--EVDRLDQIEPVLAAGVDTIMLDNFSLDDLREGVELV 234 (281)
T ss_pred HHHHHHHHHhCCCCCcEEE--EeCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHh
Confidence 4566777777663 44443 445678888999999999999999999999999843
No 214
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=28.12 E-value=1.6e+02 Score=31.30 Aligned_cols=53 Identities=15% Similarity=0.112 Sum_probs=41.9
Q ss_pred HHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 040406 17 ELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYA 71 (566)
Q Consensus 17 eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~v 71 (566)
++++++|+..+..+|. -..++.+.+.+|+++||+-.+.--++++++++++..+
T Consensus 194 ~av~~~r~~~~~~kIe--VEvetleea~eA~~aGaDiImLDnmspe~l~~av~~~ 246 (294)
T PRK06978 194 AALDAAFALNAGVPVQ--IEVETLAQLETALAHGAQSVLLDNFTLDMMREAVRVT 246 (294)
T ss_pred HHHHHHHHhCCCCcEE--EEcCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHhh
Confidence 5778888766555533 3445688889999999999999999999999988743
No 215
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=27.86 E-value=1.5e+02 Score=29.74 Aligned_cols=54 Identities=24% Similarity=0.376 Sum_probs=42.2
Q ss_pred cEEEEeCCCCC-CCH--HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEe
Q 040406 2 DLVITDLHMPE-MNG--LELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV 56 (566)
Q Consensus 2 DLVLlDi~MPd-mDG--~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~ 56 (566)
.+|++|+.--+ +.| +++++++++.. ++|||+--+-.+.+.+.++.+.|+++.+.
T Consensus 163 ~ii~tdi~~dGt~~G~d~~~~~~l~~~~-~~~viasGGv~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 163 EIILTDIDRDGTMQGPDLELLKQLAEAV-NIPVIASGGVRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp EEEEEETTTTTTSSS--HHHHHHHHHHH-SSEEEEESS--SHHHHHHHHHTTECEEEE
T ss_pred EEEEeeccccCCcCCCCHHHHHHHHHHc-CCCEEEecCCCCHHHHHHHHHCCCcEEEE
Confidence 37888987654 333 67888888877 89999988888999999999999988775
No 216
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=27.84 E-value=2.2e+02 Score=30.11 Aligned_cols=53 Identities=11% Similarity=0.142 Sum_probs=42.6
Q ss_pred HHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 040406 17 ELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYA 71 (566)
Q Consensus 17 eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~v 71 (566)
+.++++|+..+..+|.+ ...+.+.+.+++++||+-.+.--+++++++++++.+
T Consensus 178 ~av~~~r~~~~~~kIeV--Ev~tleqa~ea~~agaDiI~LDn~~~e~l~~av~~~ 230 (284)
T PRK06096 178 GAINQLRRHAPEKKIVV--EADTPKEAIAALRAQPDVLQLDKFSPQQATEIAQIA 230 (284)
T ss_pred HHHHHHHHhCCCCCEEE--ECCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 56777787777666433 445788899999999999999999999999998743
No 217
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=27.40 E-value=2.6e+02 Score=29.62 Aligned_cols=55 Identities=15% Similarity=0.137 Sum_probs=41.2
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 040406 16 LELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYA 71 (566)
Q Consensus 16 ~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~v 71 (566)
.+.++.+|+..+....|-+.. .+.+.+.+|++.||+..+.-++++++|+++++.+
T Consensus 183 ~~av~~~r~~~~~~~~I~VEv-~tleea~eA~~~GaD~I~LDn~~~e~l~~av~~~ 237 (288)
T PRK07428 183 GEAITRIRQRIPYPLTIEVET-ETLEQVQEALEYGADIIMLDNMPVDLMQQAVQLI 237 (288)
T ss_pred HHHHHHHHHhCCCCCEEEEEC-CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Confidence 356667777665434444544 4567778999999999999999999999998743
No 218
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=27.29 E-value=2.7e+02 Score=33.24 Aligned_cols=72 Identities=6% Similarity=-0.188 Sum_probs=43.8
Q ss_pred cEEEEeCCCCC-C-CHHHHHHHHHHhCCC-CcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 2 DLVITDLHMPE-M-NGLELQKEINEEFIH-LPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 2 DLVLlDi~MPd-m-DG~eLLe~Lr~~~p~-IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
|+|++-..+.. + ..-++++.|++.... ++ |++.+.-..+....+.+.|+++|+..-.+..++...+.+.++.
T Consensus 635 ~ivvlcs~d~~~~e~~~~l~~~Lk~~G~~~v~-vl~GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l~~ 709 (714)
T PRK09426 635 HVVGVSSLAAGHKTLVPALIEALKKLGREDIM-VVVGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELLSA 709 (714)
T ss_pred CEEEEeccchhhHHHHHHHHHHHHhcCCCCcE-EEEeCCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHHHH
Confidence 45554433322 2 233566777776432 33 4455442333345567899999999988888888888777643
No 219
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=27.24 E-value=8.3e+02 Score=29.40 Aligned_cols=70 Identities=13% Similarity=0.177 Sum_probs=40.6
Q ss_pred EEEEe-CCCCCCCHHHHHHHHHHhCCC-CcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 3 LVITD-LHMPEMNGLELQKEINEEFIH-LPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 3 LVLlD-i~MPdmDG~eLLe~Lr~~~p~-IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
|+|+| +++-....+..+-..-++.|. +-+|++| .+...+...+...+.-|-.+|++.+++...++.++..
T Consensus 121 V~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaT--te~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~k 192 (725)
T PRK07133 121 IYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILAT--TEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEK 192 (725)
T ss_pred EEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEc--CChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHH
Confidence 56666 344332333323222223332 3333333 3445555667777778889999999999999887654
No 220
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.21 E-value=9.2e+02 Score=27.49 Aligned_cols=71 Identities=13% Similarity=0.175 Sum_probs=44.0
Q ss_pred cEEEEe-CCCCCCCHHHHHHHHHHhC-CCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 2 DLVITD-LHMPEMNGLELQKEINEEF-IHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 2 DLVLlD-i~MPdmDG~eLLe~Lr~~~-p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
.|+|+| ++|-..+.+..+-+.-++. +++.+|+.|. +...+...+...+.-|-.||++.+++...+++++..
T Consensus 121 kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlatt--d~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~ 193 (509)
T PRK14958 121 KVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATT--DHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKE 193 (509)
T ss_pred EEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEEC--ChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHH
Confidence 466765 5554445555333333333 3566666663 333344446666777888999999999998888764
No 221
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.01 E-value=8.6e+02 Score=28.60 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=30.6
Q ss_pred EEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 31 VMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 31 VIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
+|++| .+...+...+...+..|=.+|++.+++...|..++..
T Consensus 160 ~IL~t--~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~ 201 (620)
T PRK14954 160 FIFAT--TELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRA 201 (620)
T ss_pred EEEEe--CChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHH
Confidence 34444 3345566677778888888999999999988877653
No 222
>PF11338 DUF3140: Protein of unknown function (DUF3140); InterPro: IPR021487 Some members in this family of proteins are annotated as DNA binding proteins. No function is currently known.
Probab=26.91 E-value=1e+02 Score=27.56 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=29.6
Q ss_pred hHHHHHHhcCCCC--CCHHHHHHHHHHHHHHHHHhhhh
Q 040406 167 VPKKILEFMNVPG--LTRENVASHLQKYRIFLKRVADD 202 (566)
Q Consensus 167 IPKrILElMnvpG--LTrEEVaSHLQKyrl~lkrl~~~ 202 (566)
.-.+|++++.+.- ||.+. ..||+|---|.++.+.+
T Consensus 39 sGRrIv~IL~K~k~dltddD-~~hMrkVV~yv~rhlaq 75 (92)
T PF11338_consen 39 SGRRIVEILRKRKTDLTDDD-YEHMRKVVGYVKRHLAQ 75 (92)
T ss_pred hhhHHHHHHhcCcccCCHHH-HHHHHHHHHHHHHHHhc
Confidence 3478888877644 99999 79999999999999877
No 223
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=26.78 E-value=2.5e+02 Score=29.59 Aligned_cols=54 Identities=19% Similarity=0.341 Sum_probs=41.6
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHH
Q 040406 16 LELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQY 70 (566)
Q Consensus 16 ~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~ 70 (566)
.+.++.+|+..+.-.+|-++.+. .+.+.+|.+.||+.....++.++.|+++++.
T Consensus 175 ~~~v~~aR~~~~~~~~Igvsv~t-leea~~A~~~gaDyI~lD~~~~e~l~~~~~~ 228 (277)
T PRK08072 175 TKAVTSVREKLGHMVKIEVETET-EEQVREAVAAGADIIMFDNRTPDEIREFVKL 228 (277)
T ss_pred HHHHHHHHHhCCCCCEEEEEeCC-HHHHHHHHHcCCCEEEECCCCHHHHHHHHHh
Confidence 34667777777655567777764 5667788999999999999999999888764
No 224
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.55 E-value=3.7e+02 Score=29.31 Aligned_cols=43 Identities=12% Similarity=0.082 Sum_probs=25.0
Q ss_pred CcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 040406 29 LPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVT 73 (566)
Q Consensus 29 IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~ 73 (566)
+.+|+++. +...+...++..+..+=.+|++.+++...++..+.
T Consensus 158 t~~Il~t~--~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~ 200 (397)
T PRK14955 158 AIFIFATT--ELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICE 200 (397)
T ss_pred eEEEEEeC--ChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence 34444442 23344445554455566777888888877776654
No 225
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=26.41 E-value=1.3e+02 Score=30.18 Aligned_cols=43 Identities=23% Similarity=0.259 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeC
Q 040406 13 MNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVK 57 (566)
Q Consensus 13 mDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~K 57 (566)
..-++|+++|.+. .+|||+=-...+++.+.+|+++||+..++=
T Consensus 131 ~pD~~lv~~l~~~--~~pvIaEGri~tpe~a~~al~~GA~aVVVG 173 (192)
T PF04131_consen 131 GPDFELVRELVQA--DVPVIAEGRIHTPEQAAKALELGAHAVVVG 173 (192)
T ss_dssp SHHHHHHHHHHHT--TSEEEEESS--SHHHHHHHHHTT-SEEEE-
T ss_pred CCCHHHHHHHHhC--CCcEeecCCCCCHHHHHHHHhcCCeEEEEC
Confidence 3458999999875 789877677788999999999999998764
No 226
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=26.35 E-value=7.5 Score=37.99 Aligned_cols=71 Identities=30% Similarity=0.413 Sum_probs=51.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHH--hCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINE--EFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYA 71 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~--~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~v 71 (566)
+|+++.++.||.+.+++++.++.. ...+++++++............+..++.+|+.||....++......+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 136 (340)
T KOG1601|consen 64 IDLSVPSLDMPGLEGFSLFVSENNPNSLRHPPVPSMPSSNSSSSSSSSVSPSASLELTKPDRKNRLKRSRQHV 136 (340)
T ss_pred ccccccccccccccccccccccccCCCCCCCCcccccccccchhhhcccCCcccccccccccCCCcccCCccc
Confidence 478889999999999998888764 23456666666666555566777778999999998855555554443
No 227
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=26.00 E-value=2.7e+02 Score=29.51 Aligned_cols=54 Identities=17% Similarity=0.175 Sum_probs=42.2
Q ss_pred HHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 040406 16 LELQKEINEEFI-HLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYA 71 (566)
Q Consensus 16 ~eLLe~Lr~~~p-~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~v 71 (566)
.+.++++|+..+ ..+|.+=. ++.+.+.+|++.||+-.+.--++++++++++..+
T Consensus 181 ~~ai~~~r~~~~~~~kIeVEv--~tleea~ea~~~gaDiI~LDn~s~e~l~~av~~~ 235 (281)
T PRK06106 181 REAIRRARAGVGHLVKIEVEV--DTLDQLEEALELGVDAVLLDNMTPDTLREAVAIV 235 (281)
T ss_pred HHHHHHHHHhCCCCCcEEEEe--CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHh
Confidence 356777777776 35555533 3677888999999999999999999999998843
No 228
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=25.85 E-value=2e+02 Score=30.08 Aligned_cols=54 Identities=13% Similarity=0.159 Sum_probs=40.4
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 040406 16 LELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYA 71 (566)
Q Consensus 16 ~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~v 71 (566)
.+.++.+|+..+.. +|.++.+ +.+.+.+|++.||+....-|+.+++++..++.+
T Consensus 171 ~~av~~~R~~~~~~-~IgVev~-t~eea~~A~~~gaD~I~ld~~~p~~l~~~~~~~ 224 (272)
T cd01573 171 LKALARLRATAPEK-KIVVEVD-SLEEALAAAEAGADILQLDKFSPEELAELVPKL 224 (272)
T ss_pred HHHHHHHHHhCCCC-eEEEEcC-CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Confidence 56777888777665 4455554 456777889999999999999999988776543
No 229
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=25.45 E-value=4.2e+02 Score=26.10 Aligned_cols=50 Identities=22% Similarity=0.183 Sum_probs=33.0
Q ss_pred cEEEEeCCC---CC-CCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEE
Q 040406 2 DLVITDLHM---PE-MNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFY 54 (566)
Q Consensus 2 DLVLlDi~M---Pd-mDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dY 54 (566)
|+|++|..+ |. ..-.++++.+++. +.++++. ...+.+.+.++.+.|++.+
T Consensus 90 d~I~~d~~~~~~p~~~~~~~~i~~~~~~-~~i~vi~--~v~t~ee~~~a~~~G~d~i 143 (221)
T PRK01130 90 DIIALDATLRPRPDGETLAELVKRIKEY-PGQLLMA--DCSTLEEGLAAQKLGFDFI 143 (221)
T ss_pred CEEEEeCCCCCCCCCCCHHHHHHHHHhC-CCCeEEE--eCCCHHHHHHHHHcCCCEE
Confidence 678888765 32 4556777777765 5666654 3345566778888887644
No 230
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=25.42 E-value=2.8e+02 Score=29.24 Aligned_cols=52 Identities=15% Similarity=0.195 Sum_probs=39.1
Q ss_pred HHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHH
Q 040406 17 ELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQY 70 (566)
Q Consensus 17 eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~ 70 (566)
..++.+|+..+..+ |-++.+ +.+.+.+|++.||+....-++.+++++++++.
T Consensus 178 ~av~~~r~~~~~~~-I~VEv~-tleea~eA~~~gaD~I~LD~~~~e~l~~~v~~ 229 (277)
T PRK05742 178 QAVAAAHRIAPGKP-VEVEVE-SLDELRQALAAGADIVMLDELSLDDMREAVRL 229 (277)
T ss_pred HHHHHHHHhCCCCe-EEEEeC-CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Confidence 45666777665544 444443 47778899999999999999999999988864
No 231
>PF05729 NACHT: NACHT domain
Probab=25.31 E-value=4.5e+02 Score=23.36 Aligned_cols=56 Identities=7% Similarity=0.110 Sum_probs=35.1
Q ss_pred HHHHHHHHh--CCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 040406 17 ELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVT 73 (566)
Q Consensus 17 eLLe~Lr~~--~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~ 73 (566)
+++..+-.. .+.+++|+.+.........+ .-....-+-..|++.+++...+++.++
T Consensus 107 ~~l~~l~~~~~~~~~~liit~r~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 107 DLLSQLLPQALPPGVKLIITSRPRAFPDLRR-RLKQAQILELEPFSEEDIKQYLRKYFS 164 (166)
T ss_pred HHHHHHhhhccCCCCeEEEEEcCChHHHHHH-hcCCCcEEEECCCCHHHHHHHHHHHhh
Confidence 344444333 56777777665544433322 223446788899999999999887664
No 232
>PRK04302 triosephosphate isomerase; Provisional
Probab=25.27 E-value=1.8e+02 Score=28.97 Aligned_cols=54 Identities=9% Similarity=0.044 Sum_probs=38.3
Q ss_pred HHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCC--CChHHHHHHHHH
Q 040406 17 ELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKP--VNPDALRNVWQY 70 (566)
Q Consensus 17 eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP--~~~eeL~~aI~~ 70 (566)
++++.+|+...++|||.-.+-.+.+.+.++++.|+++++.-- +..+++...++.
T Consensus 162 ~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~~~~~~~~~~~ 217 (223)
T PRK04302 162 DAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLASGVVKAKDPEAALRD 217 (223)
T ss_pred HHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhCCcCHHHHHHH
Confidence 455666665557899998888889999999999999987653 223444444443
No 233
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=24.92 E-value=1.7e+02 Score=33.13 Aligned_cols=54 Identities=13% Similarity=0.130 Sum_probs=39.8
Q ss_pred CcEEEEeCCCC-CCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEE
Q 040406 1 IDLVITDLHMP-EMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYM 55 (566)
Q Consensus 1 pDLVLlDi~MP-dmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL 55 (566)
.|+|++|.--- ...-.+++++||+.+|+++||. -...+.+.+..++++||+..-
T Consensus 240 vd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~a-gnv~t~~~a~~l~~aGad~v~ 294 (479)
T PRK07807 240 VDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVA-GNVVTAEGTRDLVEAGADIVK 294 (479)
T ss_pred CCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEe-eccCCHHHHHHHHHcCCCEEE
Confidence 47888897544 4556789999999998876654 234556778888999998864
No 234
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.86 E-value=1.1e+03 Score=27.19 Aligned_cols=71 Identities=14% Similarity=0.208 Sum_probs=44.1
Q ss_pred cEEEEe-CCCCCCCHHHHHHHHHHhC-CCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 2 DLVITD-LHMPEMNGLELQKEINEEF-IHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 2 DLVLlD-i~MPdmDG~eLLe~Lr~~~-p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
.|+|+| ++|-....+..+-+.-++. +++.+|++|. +...+...+...+..|=.|+++.+++...+..++..
T Consensus 121 KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~--~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~ 193 (576)
T PRK14965 121 KIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATT--EPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQ 193 (576)
T ss_pred eEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeC--ChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHH
Confidence 366666 4444444454343333333 3456666663 344555666767777888899999999988887754
No 235
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=24.48 E-value=2.6e+02 Score=30.41 Aligned_cols=70 Identities=9% Similarity=0.022 Sum_probs=45.5
Q ss_pred CcEEEEeCCCCCC----CHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEM----NGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYA 71 (566)
Q Consensus 1 pDLVLlDi~MPdm----DG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~v 71 (566)
+|||++...-... ..++.++++++..|+++||+.-.... ....++++....|++..+-..+.+.+.++..
T Consensus 34 aD~v~intctv~~~a~~~~~~~i~~~k~~~p~~~vvvgGc~a~-~~~ee~~~~~~vD~vv~~e~~~~~~~ll~~~ 107 (414)
T TIGR01579 34 ADVYIINTCTVTAKADSKARRAIRRARRQNPTAKIIVTGCYAQ-SNPKELADLKDVDLVLGNKEKDKINKLLSLG 107 (414)
T ss_pred CCEEEEeccccchHHHHHHHHHHHHHHhhCCCcEEEEECCccc-cCHHHHhcCCCCcEEECCCCHHHHHHHHHHH
Confidence 4888887544432 46888888888887776555433332 2223344566678888888877777777644
No 236
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=24.26 E-value=1.5e+02 Score=28.22 Aligned_cols=30 Identities=13% Similarity=0.169 Sum_probs=17.3
Q ss_pred HHHHHHHhcCCcEEEeCCCChHHHHHHHHH
Q 040406 41 SVIMKSLASGAVFYMVKPVNPDALRNVWQY 70 (566)
Q Consensus 41 ~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~ 70 (566)
..+..+++..+.-+-.+|++.+++...++.
T Consensus 137 ~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~ 166 (188)
T TIGR00678 137 EKLLPTIRSRCQVLPFPPLSEEALLQWLIR 166 (188)
T ss_pred HhChHHHHhhcEEeeCCCCCHHHHHHHHHH
Confidence 344455555555666666666666555543
No 237
>PLN02826 dihydroorotate dehydrogenase
Probab=23.95 E-value=1.3e+02 Score=33.32 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHhcCCcEEE
Q 040406 15 GLELQKEINEEFI-HLPVMVMSSDDRESVIMKSLASGAVFYM 55 (566)
Q Consensus 15 G~eLLe~Lr~~~p-~IPVIvLSa~~d~~~~~~Al~aGA~dYL 55 (566)
.+++++++++... ++|||.+.+-.+.+.+.+.+.+||+..-
T Consensus 327 sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~i~AGAs~VQ 368 (409)
T PLN02826 327 STEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIRAGASLVQ 368 (409)
T ss_pred HHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCCCeee
Confidence 3567777776653 6999999999999999999999998743
No 238
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=23.74 E-value=9.2e+02 Score=28.98 Aligned_cols=71 Identities=14% Similarity=0.265 Sum_probs=42.1
Q ss_pred cEEEEeC-CCCCCCHHH-HHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 2 DLVITDL-HMPEMNGLE-LQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 2 DLVLlDi-~MPdmDG~e-LLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
.|||+|= ++-....+. |++.|.+-...+.+|++|.. ...+...+...+..|-.++++.+++...|++++..
T Consensus 121 KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd--~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~k 193 (709)
T PRK08691 121 KVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTD--PHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDS 193 (709)
T ss_pred EEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCC--ccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHH
Confidence 4677763 443333333 34444433345666666643 22233334455677888899999999999988764
No 239
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=23.72 E-value=2.7e+02 Score=28.36 Aligned_cols=54 Identities=19% Similarity=0.211 Sum_probs=42.3
Q ss_pred EEEEeCCCCC---CCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeC
Q 040406 3 LVITDLHMPE---MNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVK 57 (566)
Q Consensus 3 LVLlDi~MPd---mDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~K 57 (566)
|+++|+.-.. ..-++++++|++.. ++||++--+-.+.+.+.+++..||+..+.-
T Consensus 47 l~v~Dl~~~~~~~~~n~~~i~~i~~~~-~~pv~~~GGi~s~~d~~~~~~~Ga~~vivg 103 (254)
T TIGR00735 47 LVFLDITASSEGRTTMIDVVERTAETV-FIPLTVGGGIKSIEDVDKLLRAGADKVSIN 103 (254)
T ss_pred EEEEcCCcccccChhhHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 6778876443 23467788887765 789999999999999999999999887654
No 240
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=23.53 E-value=1.6e+02 Score=31.02 Aligned_cols=52 Identities=12% Similarity=0.122 Sum_probs=33.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEE
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFY 54 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dY 54 (566)
+|+|++| .|+-.+-.+.++.++...+. .+|-.|+.-+.+.+......|++-+
T Consensus 209 aDiI~lD-n~~~e~l~~~v~~l~~~~~~-~~leasGGI~~~ni~~ya~~GvD~i 260 (277)
T TIGR01334 209 PDILQLD-KFTPQQLHHLHERLKFFDHI-PTLAAAGGINPENIADYIEAGIDLF 260 (277)
T ss_pred cCEEEEC-CCCHHHHHHHHHHHhccCCC-EEEEEECCCCHHHHHHHHhcCCCEE
Confidence 5889999 33333333444444433444 3567788888888888889998774
No 241
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=23.12 E-value=1.4e+02 Score=30.95 Aligned_cols=56 Identities=21% Similarity=0.225 Sum_probs=39.2
Q ss_pred CCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 040406 12 EMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVT 73 (566)
Q Consensus 12 dmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~ 73 (566)
+.-|+.+++.+. ..+|||....... ..+.+..|..+|+.+|-+.++|.++|..++.
T Consensus 289 Eg~~~~~lEAma---~G~PvI~~~~~~g---~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~ 344 (372)
T cd04949 289 EGFGLSLMEALS---HGLPVISYDVNYG---PSEIIEDGENGYLVPKGDIEALAEAIIELLN 344 (372)
T ss_pred cccChHHHHHHh---CCCCEEEecCCCC---cHHHcccCCCceEeCCCcHHHHHHHHHHHHc
Confidence 344566666664 3788887532211 1244567889999999999999999998874
No 242
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=23.12 E-value=2.5e+02 Score=28.72 Aligned_cols=53 Identities=17% Similarity=0.345 Sum_probs=39.1
Q ss_pred EEEEeCCCCC-CC--HHHHHHHHHHhCCCCcEEEEecCCChHHHHHHH-hcCCcEEEe
Q 040406 3 LVITDLHMPE-MN--GLELQKEINEEFIHLPVMVMSSDDRESVIMKSL-ASGAVFYMV 56 (566)
Q Consensus 3 LVLlDi~MPd-mD--G~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al-~aGA~dYL~ 56 (566)
+++.|+.--+ +. -+++++++++. ..+|||.--+-.+.+.+.+++ ..|+++.+.
T Consensus 169 ii~~~i~~~G~~~G~d~~~i~~~~~~-~~ipvIasGGv~s~eD~~~l~~~~GvdgViv 225 (258)
T PRK01033 169 ILLNSIDRDGTMKGYDLELLKSFRNA-LKIPLIALGGAGSLDDIVEAILNLGADAAAA 225 (258)
T ss_pred EEEEccCCCCCcCCCCHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHHHHCCCCEEEE
Confidence 5667664332 12 36788888876 479999988889999999988 789887443
No 243
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.68 E-value=1.3e+03 Score=27.04 Aligned_cols=71 Identities=20% Similarity=0.298 Sum_probs=46.9
Q ss_pred cEEEEe-CCCCCCCHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 2 DLVITD-LHMPEMNGLELQKEINEEFI-HLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 2 DLVLlD-i~MPdmDG~eLLe~Lr~~~p-~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
.|||+| ++|-..+++..|-+.-++.| .+-+|++| .+...+...+...+.-|=.++++.+++...+.+++..
T Consensus 120 KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~t--te~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~ 192 (584)
T PRK14952 120 RIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFAT--TEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQ 192 (584)
T ss_pred eEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEe--CChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHH
Confidence 366666 56655556654444334443 34455555 3445666777777888999999999999999888754
No 244
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=22.19 E-value=1.6e+02 Score=30.75 Aligned_cols=40 Identities=8% Similarity=-0.004 Sum_probs=32.5
Q ss_pred HHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHhcCCcEEE
Q 040406 16 LELQKEINEEFI-HLPVMVMSSDDRESVIMKSLASGAVFYM 55 (566)
Q Consensus 16 ~eLLe~Lr~~~p-~IPVIvLSa~~d~~~~~~Al~aGA~dYL 55 (566)
++.++++++..+ ++|||...+-.+.+.+.+.+.+||+..-
T Consensus 230 l~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vq 270 (294)
T cd04741 230 LGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQ 270 (294)
T ss_pred HHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCcee
Confidence 355666767665 6999999999999999999999998743
No 245
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=22.10 E-value=2.5e+02 Score=31.53 Aligned_cols=70 Identities=13% Similarity=0.111 Sum_probs=44.3
Q ss_pred CcEEEEeCCCCCC-CHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHh-cCCcEEEeCCCChHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEM-NGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLA-SGAVFYMVKPVNPDALRNVWQYA 71 (566)
Q Consensus 1 pDLVLlDi~MPdm-DG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~-aGA~dYL~KP~~~eeL~~aI~~v 71 (566)
||+|.+-..-+.. ...++++.+|+..|+++||+=-.+... ...+++. ....||++.---.+.+.+.++.+
T Consensus 64 pdvVgis~~t~~~~~a~~~~~~~k~~~P~~~iV~GG~h~t~-~~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~l 135 (497)
T TIGR02026 64 PDLVLITAITPAIYIACETLKFARERLPNAIIVLGGIHPTF-MFHQVLTEAPWIDFIVRGEGEETVVKLIAAL 135 (497)
T ss_pred cCEEEEecCcccHHHHHHHHHHHHHHCCCCEEEEcCCCcCc-CHHHHHhcCCCccEEEeCCcHHHHHHHHHHH
Confidence 6777776655543 345777888888888888765444332 2223443 34568888876666666666654
No 246
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=22.01 E-value=1.5e+02 Score=30.41 Aligned_cols=39 Identities=15% Similarity=0.280 Sum_probs=32.9
Q ss_pred HHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHhcCCcEE
Q 040406 16 LELQKEINEEFI-HLPVMVMSSDDRESVIMKSLASGAVFY 54 (566)
Q Consensus 16 ~eLLe~Lr~~~p-~IPVIvLSa~~d~~~~~~Al~aGA~dY 54 (566)
++.++++++..+ ++|||...+-.+.+.+.+++.+||+..
T Consensus 230 ~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V 269 (289)
T cd02810 230 LRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAV 269 (289)
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHh
Confidence 567788888765 799999999999999999999998763
No 247
>PF13487 HD_5: HD domain; PDB: 3TMD_A 3TM8_B 3TMC_A 3TMB_B.
Probab=22.00 E-value=1e+02 Score=24.76 Aligned_cols=23 Identities=17% Similarity=0.102 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhc
Q 040406 180 LTRENVASHLQKYRIFLKRVADDG 203 (566)
Q Consensus 180 LTrEEVaSHLQKyrl~lkrl~~~~ 203 (566)
||.+| ...+++|+.+..++++.-
T Consensus 3 Lt~~e-~~~~~~Hp~~~~~~l~~~ 25 (64)
T PF13487_consen 3 LTPEE-REIIQQHPEYGAELLSQI 25 (64)
T ss_dssp S-HHH-HHHHHHHHHHHHHHHTT-
T ss_pred CCHHH-HHHHHHHHHHHHHHHHcc
Confidence 89999 899999999999998764
No 248
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=21.98 E-value=1.5e+02 Score=31.01 Aligned_cols=41 Identities=22% Similarity=0.143 Sum_probs=36.2
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeC
Q 040406 16 LELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVK 57 (566)
Q Consensus 16 ~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~K 57 (566)
-..++.|+++. ++|||+=.+-.....+..+++.|++..|.-
T Consensus 171 ~~~l~iiie~a-~VPviVDAGiG~pSdAa~aMElG~DaVL~N 211 (262)
T COG2022 171 PYNLEIIIEEA-DVPVIVDAGIGTPSDAAQAMELGADAVLLN 211 (262)
T ss_pred HHHHHHHHHhC-CCCEEEeCCCCChhHHHHHHhcccceeehh
Confidence 36778888877 999999999999999999999999998875
No 249
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=21.89 E-value=3.6e+02 Score=26.58 Aligned_cols=50 Identities=22% Similarity=0.246 Sum_probs=26.2
Q ss_pred cEEEEeCCC---CC-CCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEE
Q 040406 2 DLVITDLHM---PE-MNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFY 54 (566)
Q Consensus 2 DLVLlDi~M---Pd-mDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dY 54 (566)
|+|++|... |+ ..-.++++.+++.. ++++++ ...+.+.+..+.+.|++.+
T Consensus 94 d~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv--~v~t~~ea~~a~~~G~d~i 147 (219)
T cd04729 94 DIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMA--DISTLEEALNAAKLGFDII 147 (219)
T ss_pred CEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEE--ECCCHHHHHHHHHcCCCEE
Confidence 556666543 32 24455666666655 444443 2234455566666776544
No 250
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.50 E-value=1.3e+03 Score=26.73 Aligned_cols=71 Identities=11% Similarity=0.162 Sum_probs=45.1
Q ss_pred cEEEEe-CCCCCCCHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 2 DLVITD-LHMPEMNGLELQKEINEEFI-HLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 2 DLVLlD-i~MPdmDG~eLLe~Lr~~~p-~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
.|||+| +++-..+..+.+-..-++.| .+.+|++|. +...+...+...+.-|-.||++.+++...+++++..
T Consensus 121 kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Tt--d~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~ 193 (546)
T PRK14957 121 KVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATT--DYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAK 193 (546)
T ss_pred EEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEEC--ChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHH
Confidence 366665 34333344544444334443 455666663 344455557777889999999999999999988754
No 251
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=21.50 E-value=2.8e+02 Score=24.05 Aligned_cols=37 Identities=22% Similarity=0.377 Sum_probs=18.4
Q ss_pred CcEEEEeCC-CCCC-CHHHHHHHHHHhCCCCcEEEEecC
Q 040406 1 IDLVITDLH-MPEM-NGLELQKEINEEFIHLPVMVMSSD 37 (566)
Q Consensus 1 pDLVLlDi~-MPdm-DG~eLLe~Lr~~~p~IPVIvLSa~ 37 (566)
||+|.+... .+.. ...++++.+|+..|+++||+=-..
T Consensus 52 pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~ 90 (121)
T PF02310_consen 52 PDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPH 90 (121)
T ss_dssp CSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESS
T ss_pred CcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCc
Confidence 456666552 2222 234555555555666555544433
No 252
>PRK09087 hypothetical protein; Validated
Probab=21.48 E-value=4.3e+02 Score=26.49 Aligned_cols=72 Identities=15% Similarity=0.068 Sum_probs=39.9
Q ss_pred EEEEe-CCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHH---HHHHh---cCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 3 LVITD-LHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVI---MKSLA---SGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 3 LVLlD-i~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~---~~Al~---aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
+|++| ++.-..+--++.+.+......-..|++|+....... ...++ ....-+-.+|.+.+++..++++.+..
T Consensus 90 ~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~ 168 (226)
T PRK09087 90 PVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFAD 168 (226)
T ss_pred eEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHH
Confidence 45665 333334445566655443322234555555322211 11122 34466788899999999999988765
No 253
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=21.47 E-value=2.2e+02 Score=29.89 Aligned_cols=58 Identities=17% Similarity=0.217 Sum_probs=36.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCC
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~ 60 (566)
||+||+=---+..-|-.-.+++-... ++|.|++|...... ..++++..-.+||.-+.+
T Consensus 60 pdf~I~isPN~~~PGP~~ARE~l~~~-~iP~IvI~D~p~~k-~kd~l~~~g~GYIivk~D 117 (276)
T PF01993_consen 60 PDFVIVISPNAAAPGPTKAREMLSAK-GIPCIVISDAPTKK-AKDALEEEGFGYIIVKAD 117 (276)
T ss_dssp -SEEEEE-S-TTSHHHHHHHHHHHHS-SS-EEEEEEGGGGG-GHHHHHHTT-EEEEETTS
T ss_pred CCEEEEECCCCCCCCcHHHHHHHHhC-CCCEEEEcCCCchh-hHHHHHhcCCcEEEEecC
Confidence 56666655445566766666665554 89999999976555 357777777777776654
No 254
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=21.44 E-value=3.9e+02 Score=27.99 Aligned_cols=68 Identities=16% Similarity=0.190 Sum_probs=51.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHh--CCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCC-ChHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPV-NPDALRNVWQ 69 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~--~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~-~~eeL~~aI~ 69 (566)
||-+++|.+.-..|.-.++.+|+.. .+..|||-+.. .+...+.++++.||...|..=+ +.++-+..+.
T Consensus 39 fDwl~iD~EHapnd~~sl~~qL~a~~~~~~~pvVR~p~-g~~~~Ikq~LD~GAqtlliPmV~s~eqAr~~V~ 109 (255)
T COG3836 39 FDWLLIDGEHAPNDLQSLLHQLQAVAAYASPPVVRPPV-GDPVMIKQLLDIGAQTLLIPMVDTAEQARQAVA 109 (255)
T ss_pred CCEEEecccccCccHHHHHHHHHHhhccCCCCeeeCCC-CCHHHHHHHHccccceeeeeccCCHHHHHHHHH
Confidence 6899999999999999999999864 45567765554 5667888999999999888544 4455555544
No 255
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=21.41 E-value=2.4e+02 Score=30.75 Aligned_cols=67 Identities=16% Similarity=0.247 Sum_probs=43.5
Q ss_pred cEEEEeCCCCCCCHHH-HHHHHHHhCCCCcEEEEecC-CChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 040406 2 DLVITDLHMPEMNGLE-LQKEINEEFIHLPVMVMSSD-DRESVIMKSLASGAVFYMVKPVNPDALRNVWQYA 71 (566)
Q Consensus 2 DLVLlDi~MPdmDG~e-LLe~Lr~~~p~IPVIvLSa~-~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~v 71 (566)
|.+|++..-+..=-+| ++..+ . ....|+..... ++...+...++.|+++.+.+|-++.++++....+
T Consensus 90 ~~viv~~~dW~iIPlEnlIA~~-~--~~~~l~a~v~~~~eA~~a~~~LE~G~dGVvl~~~d~~ei~~~~~~~ 158 (344)
T PRK02290 90 DYVIVEGRDWTIIPLENLIADL-G--QSGKIIAGVADAEEAKLALEILEKGVDGVLLDPDDPNEIKAIVALI 158 (344)
T ss_pred CEEEEECCCCcEecHHHHHhhh-c--CCceEEEEeCCHHHHHHHHHHhccCCCeEEECCCCHHHHHHHHHHH
Confidence 3455655444333333 44555 2 24455544433 4556677889999999999999999999877654
No 256
>cd06170 LuxR_C_like C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental
Probab=21.34 E-value=64 Score=23.93 Aligned_cols=37 Identities=11% Similarity=0.129 Sum_probs=27.3
Q ss_pred chHHHHHHhhhccCCchhHHHHhhhcccccccccccc
Q 040406 93 SAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKD 129 (566)
Q Consensus 93 S~re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~ 129 (566)
++++..++..+..+.+..++++...++..+...+.+.
T Consensus 2 ~~~e~~i~~~~~~~~s~~eia~~l~~s~~tv~~~~~~ 38 (57)
T cd06170 2 TPREREVLRLLAEGKTNKEIADILGISEKTVKTHLRN 38 (57)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 4456667777788999999998888877766665543
No 257
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=21.19 E-value=1e+03 Score=26.64 Aligned_cols=45 Identities=9% Similarity=0.113 Sum_probs=32.4
Q ss_pred CCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 28 HLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 28 ~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
.+.+|++| .....+...++..+..+-.+|++.+++...+..+++.
T Consensus 151 ~~~~Il~t--~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~ 195 (451)
T PRK06305 151 HVKFFLAT--TEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQ 195 (451)
T ss_pred CceEEEEe--CChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHH
Confidence 34455555 3345566777777888899999999999988877653
No 258
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=21.17 E-value=3e+02 Score=27.47 Aligned_cols=54 Identities=20% Similarity=0.231 Sum_probs=40.6
Q ss_pred EEEEeCCCCC---CCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeC
Q 040406 3 LVITDLHMPE---MNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVK 57 (566)
Q Consensus 3 LVLlDi~MPd---mDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~K 57 (566)
|+++|+.--+ ..-+++++++++.. .+||++--+-.+.+.+.+++..|++..+.=
T Consensus 44 i~i~d~~~~~~~~~~~~~~i~~i~~~~-~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig 100 (243)
T cd04731 44 LVFLDITASSEGRETMLDVVERVAEEV-FIPLTVGGGIRSLEDARRLLRAGADKVSIN 100 (243)
T ss_pred EEEEcCCcccccCcccHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCceEEEC
Confidence 6777876321 22367888888875 689999888889999999999998775543
No 259
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=21.10 E-value=4.9e+02 Score=26.27 Aligned_cols=54 Identities=19% Similarity=0.220 Sum_probs=41.8
Q ss_pred EEEEeCCCC---CCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeC
Q 040406 3 LVITDLHMP---EMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVK 57 (566)
Q Consensus 3 LVLlDi~MP---dmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~K 57 (566)
+.|.|+.-- ...-+++++++++.. .+||++--+-.+.+.+.+++..||+..+.-
T Consensus 47 i~i~dl~~~~~~~~~~~~~i~~i~~~~-~ipv~~~GGi~s~~~~~~~l~~Ga~~Viig 103 (253)
T PRK02083 47 LVFLDITASSEGRDTMLDVVERVAEQV-FIPLTVGGGIRSVEDARRLLRAGADKVSIN 103 (253)
T ss_pred EEEEeCCcccccCcchHHHHHHHHHhC-CCCEEeeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 667777632 233467888888765 789999888899999999999998887664
No 260
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.97 E-value=1.3e+03 Score=26.59 Aligned_cols=45 Identities=4% Similarity=0.031 Sum_probs=28.4
Q ss_pred CCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 28 HLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 28 ~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
.+.+|+++. +...+...+..-+..+-.++++.+++...++.....
T Consensus 150 ~tv~Il~t~--~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~ 194 (585)
T PRK14950 150 HAIFILATT--EVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAA 194 (585)
T ss_pred CeEEEEEeC--ChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHH
Confidence 344444442 334445556666677778888888888888776643
No 261
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=20.89 E-value=4.6e+02 Score=26.92 Aligned_cols=54 Identities=13% Similarity=0.119 Sum_probs=40.5
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHH
Q 040406 16 LELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQ 69 (566)
Q Consensus 16 ~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~ 69 (566)
.++++++++.....||++=.+-.+.+.+.+++..||+..++-..-.++..+.++
T Consensus 172 ~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~d~~~~~~ 225 (232)
T PRK04169 172 PEMVKAVKKALDITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEEDPKKTVK 225 (232)
T ss_pred HHHHHHHHHhcCCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhhCHHHHHH
Confidence 789999998763349988777788888989899999999987644444333333
No 262
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=20.75 E-value=2.1e+02 Score=27.35 Aligned_cols=55 Identities=24% Similarity=0.248 Sum_probs=0.0
Q ss_pred CcEEEEeCCCCCCCH-------HHHHHHHHHhCC----CCcEEEEecCCChHHHHHHHhcCCcEEEe
Q 040406 1 IDLVITDLHMPEMNG-------LELQKEINEEFI----HLPVMVMSSDDRESVIMKSLASGAVFYMV 56 (566)
Q Consensus 1 pDLVLlDi~MPdmDG-------~eLLe~Lr~~~p----~IPVIvLSa~~d~~~~~~Al~aGA~dYL~ 56 (566)
+|.|+++-..|+.+| .+.++++++... ++||++.-+-.. +.+.++++.||+.++.
T Consensus 128 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~~~gad~iiv 193 (211)
T cd00429 128 VDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLAEAGADVLVA 193 (211)
T ss_pred CCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHHcCCCEEEE
No 263
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=20.68 E-value=2.1e+02 Score=29.13 Aligned_cols=54 Identities=15% Similarity=0.155 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 040406 13 MNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVT 73 (566)
Q Consensus 13 mDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~ 73 (566)
.-|..+++.+.. .+|||+. ... ...+.+..|..+|+.+|-+.++|.++|..++.
T Consensus 282 ~~~~~~~EAma~---g~PvI~s-~~~---~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~ 335 (371)
T cd04962 282 SFGLAALEAMAC---GVPVVAS-NAG---GIPEVVKHGETGFLVDVGDVEAMAEYALSLLE 335 (371)
T ss_pred CCccHHHHHHHc---CCCEEEe-CCC---CchhhhcCCCceEEcCCCCHHHHHHHHHHHHh
Confidence 345667766653 6788863 322 23456677888999999999999999887764
No 264
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=20.65 E-value=1.3e+02 Score=31.25 Aligned_cols=41 Identities=17% Similarity=0.247 Sum_probs=32.7
Q ss_pred HHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHhcCCcEEEe
Q 040406 16 LELQKEINEEFI-HLPVMVMSSDDRESVIMKSLASGAVFYMV 56 (566)
Q Consensus 16 ~eLLe~Lr~~~p-~IPVIvLSa~~d~~~~~~Al~aGA~dYL~ 56 (566)
+..++++++..+ ++|||.+.+-.+.+++.+.+.+||+..-.
T Consensus 231 L~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv 272 (295)
T PF01180_consen 231 LRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAVQV 272 (295)
T ss_dssp HHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEEEE
T ss_pred HHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHhee
Confidence 567777777765 79999999999999999999999988544
No 265
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=20.20 E-value=7.8e+02 Score=26.81 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=21.5
Q ss_pred cCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 49 SGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 49 aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
.|-.....+|++.++|..+|+.-...
T Consensus 180 l~~~~I~F~pY~a~el~~Il~~R~~~ 205 (366)
T COG1474 180 LGPSEIVFPPYTAEELYDILRERVEE 205 (366)
T ss_pred cCcceeeeCCCCHHHHHHHHHHHHHh
Confidence 56777889999999999999876554
Done!