Query 040406
Match_columns 566
No_of_seqs 362 out of 2877
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 12:51:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040406.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040406hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 99.8 4.1E-19 1.4E-23 143.3 5.3 61 139-199 3-63 (64)
2 1a04_A Nitrate/nitrite respons 99.7 8.9E-16 3E-20 144.8 14.4 141 1-141 52-204 (215)
3 3klo_A Transcriptional regulat 99.6 4E-16 1.4E-20 149.0 9.9 139 1-139 55-207 (225)
4 1yio_A Response regulatory pro 99.6 7.6E-16 2.6E-20 144.2 9.4 138 1-138 49-189 (208)
5 3to5_A CHEY homolog; alpha(5)b 99.6 4.6E-15 1.6E-19 134.9 9.6 73 1-73 58-132 (134)
6 3c3w_A Two component transcrip 99.6 1.1E-15 3.8E-20 146.5 4.9 140 1-140 48-198 (225)
7 1p2f_A Response regulator; DRR 99.5 4.6E-14 1.6E-18 133.5 11.9 136 1-136 44-197 (220)
8 3q9s_A DNA-binding response re 99.5 1.5E-14 5.2E-19 141.5 8.7 134 1-135 82-235 (249)
9 3r0j_A Possible two component 99.5 5.3E-14 1.8E-18 136.6 12.3 130 1-130 68-224 (250)
10 3rqi_A Response regulator prot 99.5 1.2E-14 4.2E-19 134.8 7.5 124 1-127 52-177 (184)
11 1kgs_A DRRD, DNA binding respo 99.5 3.1E-14 1.1E-18 134.6 9.5 135 1-135 47-204 (225)
12 1ys7_A Transcriptional regulat 99.5 6.9E-14 2.4E-18 132.9 8.3 135 1-135 52-212 (233)
13 2gwr_A DNA-binding response re 99.4 1.6E-13 5.5E-18 132.0 7.6 134 1-135 50-206 (238)
14 2r25_B Osmosensing histidine p 99.4 6.2E-13 2.1E-17 116.3 10.3 74 1-74 53-127 (133)
15 2oqr_A Sensory transduction pr 99.4 2.4E-13 8.2E-18 129.1 8.2 134 1-135 49-209 (230)
16 3gl9_A Response regulator; bet 99.4 9.1E-13 3.1E-17 113.6 10.1 72 1-72 47-120 (122)
17 3h1g_A Chemotaxis protein CHEY 99.4 1.6E-12 5.4E-17 112.6 10.6 73 1-73 52-126 (129)
18 3t6k_A Response regulator rece 99.4 2E-12 7E-17 113.4 10.8 75 1-75 49-125 (136)
19 1dbw_A Transcriptional regulat 99.4 2.6E-12 9E-17 110.3 10.9 73 1-73 48-120 (126)
20 2pl1_A Transcriptional regulat 99.4 4.1E-12 1.4E-16 107.6 11.7 74 1-74 45-118 (121)
21 3b2n_A Uncharacterized protein 99.4 2.4E-12 8.2E-17 112.1 10.5 74 1-74 50-123 (133)
22 4dad_A Putative pilus assembly 99.4 2E-12 6.7E-17 113.9 9.8 75 1-75 68-142 (146)
23 3f6p_A Transcriptional regulat 99.4 2E-12 6.9E-17 110.9 9.2 72 1-73 47-118 (120)
24 3crn_A Response regulator rece 99.3 4.1E-12 1.4E-16 110.4 11.1 74 1-74 48-121 (132)
25 3jte_A Response regulator rece 99.3 6.5E-12 2.2E-16 109.9 11.6 75 1-75 50-124 (143)
26 1tmy_A CHEY protein, TMY; chem 99.3 4E-12 1.4E-16 107.8 9.8 72 1-72 48-119 (120)
27 1i3c_A Response regulator RCP1 99.3 7.1E-12 2.4E-16 111.4 11.6 75 1-75 62-138 (149)
28 1zgz_A Torcad operon transcrip 99.3 8.1E-12 2.8E-16 106.1 11.2 73 1-74 47-119 (122)
29 1srr_A SPO0F, sporulation resp 99.3 3.9E-12 1.3E-16 108.7 9.2 72 1-72 48-119 (124)
30 3cfy_A Putative LUXO repressor 99.3 8.1E-12 2.8E-16 109.7 11.0 74 1-74 49-122 (137)
31 1jbe_A Chemotaxis protein CHEY 99.3 9.6E-12 3.3E-16 106.5 11.0 74 1-74 50-125 (128)
32 3hv2_A Response regulator/HD d 99.3 8.9E-12 3E-16 111.0 11.0 75 1-75 59-134 (153)
33 3f6c_A Positive transcription 99.3 4.1E-12 1.4E-16 109.7 8.6 75 1-75 47-121 (134)
34 4e7p_A Response regulator; DNA 99.3 8.3E-12 2.8E-16 110.8 10.7 75 1-75 67-141 (150)
35 3kto_A Response regulator rece 99.3 5.4E-12 1.8E-16 110.3 9.3 76 1-76 51-128 (136)
36 1dz3_A Stage 0 sporulation pro 99.3 7.4E-12 2.5E-16 108.1 10.0 74 1-74 49-123 (130)
37 3hdg_A Uncharacterized protein 99.3 6.1E-12 2.1E-16 109.3 9.3 75 1-75 52-126 (137)
38 3heb_A Response regulator rece 99.3 9.7E-12 3.3E-16 110.4 10.8 76 1-76 60-137 (152)
39 1xhf_A DYE resistance, aerobic 99.3 1.3E-11 4.6E-16 104.9 11.2 73 1-74 48-120 (123)
40 1k68_A Phytochrome response re 99.3 1.2E-11 4.1E-16 106.5 11.0 76 1-76 56-133 (140)
41 3eul_A Possible nitrate/nitrit 99.3 1.2E-11 4.2E-16 109.7 11.2 75 1-75 62-136 (152)
42 3kht_A Response regulator; PSI 99.3 8.9E-12 3E-16 109.4 9.9 76 1-76 52-130 (144)
43 2a9o_A Response regulator; ess 99.3 1.2E-11 4.1E-16 104.2 10.2 72 1-73 46-117 (120)
44 3lua_A Response regulator rece 99.3 4.4E-12 1.5E-16 110.8 7.7 75 1-75 51-128 (140)
45 3cu5_A Two component transcrip 99.3 5E-12 1.7E-16 111.6 8.1 74 1-74 50-123 (141)
46 3gt7_A Sensor protein; structu 99.3 1.7E-11 5.9E-16 109.7 11.7 76 1-76 52-129 (154)
47 2hqr_A Putative transcriptiona 99.3 4.2E-12 1.4E-16 120.2 7.6 128 1-134 45-195 (223)
48 3snk_A Response regulator CHEY 99.3 2.8E-12 9.5E-17 111.7 5.9 73 1-73 60-132 (135)
49 1zh2_A KDP operon transcriptio 99.3 1.2E-11 4.1E-16 104.4 9.6 73 1-74 46-118 (121)
50 3hzh_A Chemotaxis response reg 99.3 9.8E-12 3.4E-16 111.6 9.5 72 1-72 84-155 (157)
51 2zay_A Response regulator rece 99.3 1.9E-11 6.5E-16 107.4 11.1 77 1-77 53-131 (147)
52 3m6m_D Sensory/regulatory prot 99.3 1.5E-11 5E-16 109.1 10.3 73 1-73 59-135 (143)
53 3hdv_A Response regulator; PSI 99.3 1.5E-11 5.2E-16 106.6 10.1 74 1-74 53-127 (136)
54 1mvo_A PHOP response regulator 99.3 1.5E-11 5E-16 106.5 9.9 74 1-74 48-121 (136)
55 3eod_A Protein HNR; response r 99.3 8.3E-12 2.8E-16 107.5 8.3 74 1-74 52-126 (130)
56 3luf_A Two-component system re 99.3 1.2E-11 4.1E-16 122.1 10.4 76 1-76 170-247 (259)
57 1k66_A Phytochrome response re 99.3 1.6E-11 5.5E-16 107.1 10.0 76 1-76 63-140 (149)
58 1p6q_A CHEY2; chemotaxis, sign 99.3 8.6E-12 3E-16 107.0 8.0 73 1-73 52-126 (129)
59 3cnb_A DNA-binding response re 99.3 2.8E-11 9.4E-16 105.1 11.3 76 1-76 55-132 (143)
60 3kcn_A Adenylate cyclase homol 99.3 2.1E-11 7.2E-16 108.3 10.7 75 1-75 49-124 (151)
61 3ilh_A Two component response 99.3 2.5E-11 8.5E-16 105.8 10.9 74 1-74 61-139 (146)
62 2qzj_A Two-component response 99.3 1.5E-11 5.2E-16 107.8 9.4 75 1-76 49-123 (136)
63 2jk1_A HUPR, hydrogenase trans 99.3 2.3E-11 7.8E-16 106.4 10.4 74 1-74 45-119 (139)
64 3nhm_A Response regulator; pro 99.3 1.6E-11 5.3E-16 105.9 9.1 75 1-76 48-124 (133)
65 1mb3_A Cell division response 99.3 1E-11 3.5E-16 105.5 7.9 73 1-73 46-120 (124)
66 3grc_A Sensor protein, kinase; 99.2 9.6E-12 3.3E-16 108.4 7.2 77 1-77 51-130 (140)
67 2jba_A Phosphate regulon trans 99.2 6.7E-12 2.3E-16 107.1 5.8 74 1-74 47-122 (127)
68 1s8n_A Putative antiterminator 99.2 1.7E-11 5.8E-16 114.8 9.1 74 1-75 59-132 (205)
69 3sy8_A ROCR; TIM barrel phosph 99.2 1.9E-11 6.7E-16 127.9 10.1 76 1-76 50-130 (400)
70 3mm4_A Histidine kinase homolo 99.2 2.4E-11 8.1E-16 115.4 9.6 74 1-76 120-198 (206)
71 1qkk_A DCTD, C4-dicarboxylate 99.2 5.1E-11 1.7E-15 106.0 11.1 75 1-75 48-122 (155)
72 3cz5_A Two-component response 99.2 3.6E-11 1.2E-15 106.8 10.0 74 1-74 52-125 (153)
73 3cg0_A Response regulator rece 99.2 5.6E-11 1.9E-15 103.0 11.0 75 1-76 55-130 (140)
74 3h5i_A Response regulator/sens 99.2 1.3E-11 4.6E-16 108.2 7.0 75 1-76 51-126 (140)
75 3dzd_A Transcriptional regulat 99.2 1.3E-11 4.6E-16 129.0 8.2 76 1-76 45-120 (368)
76 3n53_A Response regulator rece 99.2 8.2E-12 2.8E-16 109.1 5.4 75 1-75 47-123 (140)
77 2rjn_A Response regulator rece 99.2 6E-11 2E-15 105.5 11.1 75 1-75 52-127 (154)
78 3i42_A Response regulator rece 99.2 1.6E-11 5.5E-16 105.3 6.7 73 1-74 48-122 (127)
79 2qxy_A Response regulator; reg 99.2 3.6E-11 1.2E-15 105.0 9.0 75 1-76 49-123 (142)
80 3eqz_A Response regulator; str 99.2 2.7E-11 9.2E-16 104.2 8.0 73 1-73 47-124 (135)
81 2qr3_A Two-component system re 99.2 4.3E-11 1.5E-15 103.8 9.3 74 1-74 48-126 (140)
82 2lpm_A Two-component response 99.2 9.7E-13 3.3E-17 118.3 -1.6 67 1-72 54-120 (123)
83 2ayx_A Sensor kinase protein R 99.2 4.6E-11 1.6E-15 117.3 9.6 75 1-75 174-248 (254)
84 1qo0_D AMIR; binding protein, 99.2 2.2E-11 7.6E-16 113.2 6.9 74 1-75 53-126 (196)
85 3n0r_A Response regulator; sig 99.2 9.7E-12 3.3E-16 125.5 4.3 73 1-76 206-279 (286)
86 3cg4_A Response regulator rece 99.2 2E-11 6.8E-16 106.4 5.5 76 1-76 52-129 (142)
87 3a10_A Response regulator; pho 99.2 4.1E-11 1.4E-15 100.9 7.3 70 1-72 46-115 (116)
88 1ny5_A Transcriptional regulat 99.2 8E-11 2.7E-15 123.7 10.6 75 1-75 45-119 (387)
89 3c3m_A Response regulator rece 99.1 8.7E-11 3E-15 102.8 8.8 74 1-74 48-123 (138)
90 3eq2_A Probable two-component 99.1 4.2E-11 1.5E-15 124.2 7.9 75 1-75 50-125 (394)
91 2qsj_A DNA-binding response re 99.1 4.2E-11 1.5E-15 106.2 6.3 75 1-75 51-125 (154)
92 1dcf_A ETR1 protein; beta-alph 99.1 1.2E-10 4.2E-15 101.1 9.1 72 2-73 52-128 (136)
93 2qvg_A Two component response 99.1 1.5E-10 5.1E-15 101.0 9.5 72 1-72 60-133 (143)
94 1w25_A Stalked-cell differenti 99.1 1.4E-10 4.9E-15 122.0 11.2 74 1-74 46-121 (459)
95 2qv0_A Protein MRKE; structura 99.1 1.3E-10 4.4E-15 101.6 9.0 74 1-76 56-129 (143)
96 3bre_A Probable two-component 99.1 1.4E-10 4.6E-15 117.7 10.3 73 1-73 64-138 (358)
97 3lte_A Response regulator; str 99.1 2.1E-10 7.3E-15 98.6 9.5 73 1-74 51-125 (132)
98 2gkg_A Response regulator homo 99.1 1.5E-10 5.2E-15 97.9 8.1 72 1-73 50-124 (127)
99 3t8y_A CHEB, chemotaxis respon 99.1 2.6E-10 8.9E-15 103.5 9.6 72 1-73 72-154 (164)
100 1dc7_A NTRC, nitrogen regulati 99.1 6.5E-12 2.2E-16 106.2 -1.7 75 1-75 48-122 (124)
101 2rdm_A Response regulator rece 99.1 5.1E-10 1.8E-14 96.0 9.5 74 1-76 51-125 (132)
102 3kyj_B CHEY6 protein, putative 99.0 1.8E-10 6.3E-15 101.3 5.7 68 1-69 61-130 (145)
103 2j48_A Two-component sensor ki 99.0 3.9E-10 1.4E-14 93.5 4.8 69 1-72 46-116 (119)
104 2pln_A HP1043, response regula 98.9 2.1E-09 7.2E-14 93.4 9.0 69 1-74 63-133 (137)
105 3c97_A Signal transduction his 98.9 1.1E-09 3.6E-14 95.8 6.8 70 1-73 55-129 (140)
106 3luf_A Two-component system re 98.9 2.2E-09 7.7E-14 105.8 8.8 59 1-61 49-107 (259)
107 2b4a_A BH3024; flavodoxin-like 98.9 7.3E-10 2.5E-14 96.4 3.0 69 1-73 61-130 (138)
108 1a2o_A CHEB methylesterase; ba 98.8 7.9E-09 2.7E-13 107.4 9.6 72 1-73 50-132 (349)
109 3cwo_X Beta/alpha-barrel prote 98.7 2E-08 6.8E-13 94.9 7.7 73 1-73 26-100 (237)
110 2vyc_A Biodegradative arginine 98.7 1.1E-08 3.9E-13 116.3 5.3 75 1-75 54-134 (755)
111 1w25_A Stalked-cell differenti 98.2 3.6E-06 1.2E-10 88.5 10.9 75 1-75 195-271 (459)
112 3cwo_X Beta/alpha-barrel prote 94.8 0.066 2.3E-06 49.9 7.8 67 2-69 146-221 (237)
113 3q7r_A Transcriptional regulat 89.7 0.79 2.7E-05 40.3 6.9 68 2-75 52-119 (121)
114 3ulq_B Transcriptional regulat 85.2 0.41 1.4E-05 40.1 2.4 52 88-139 26-77 (90)
115 3n75_A LDC, lysine decarboxyla 84.2 0.47 1.6E-05 53.9 3.0 70 1-73 52-122 (715)
116 2ekc_A AQ_1548, tryptophan syn 83.3 2.9 0.0001 41.3 8.1 57 15-71 81-143 (262)
117 3szt_A QCSR, quorum-sensing co 78.5 0.94 3.2E-05 43.8 2.5 54 88-141 172-225 (237)
118 3vnd_A TSA, tryptophan synthas 77.8 2.6 8.9E-05 42.2 5.6 56 16-71 83-144 (267)
119 3nav_A Tryptophan synthase alp 77.6 3.5 0.00012 41.5 6.4 57 14-70 83-145 (271)
120 1geq_A Tryptophan synthase alp 76.7 4.6 0.00016 38.8 6.8 53 16-69 69-127 (248)
121 1p4w_A RCSB; solution structur 75.5 1.2 4.2E-05 37.9 2.1 51 89-139 32-82 (99)
122 1je8_A Nitrate/nitrite respons 74.7 1.5 5.2E-05 35.6 2.4 52 87-138 17-68 (82)
123 1qop_A Tryptophan synthase alp 74.4 4.4 0.00015 40.0 6.2 57 15-71 81-143 (268)
124 2q0o_A Probable transcriptiona 71.9 1.6 5.5E-05 41.8 2.2 53 89-141 173-225 (236)
125 3qp6_A CVIR transcriptional re 71.4 1.8 6.2E-05 42.7 2.5 51 90-140 196-246 (265)
126 3c57_A Two component transcrip 69.9 1.6 5.5E-05 36.4 1.5 51 88-138 24-74 (95)
127 2rnj_A Response regulator prot 69.0 2 6.8E-05 35.3 1.9 51 88-138 26-76 (91)
128 1l3l_A Transcriptional activat 68.6 2.2 7.7E-05 40.8 2.4 51 90-140 172-222 (234)
129 2jpc_A SSRB; DNA binding prote 64.5 2.5 8.6E-05 31.6 1.5 44 95-138 2-45 (61)
130 1fse_A GERE; helix-turn-helix 61.8 4.3 0.00015 31.2 2.4 48 89-136 9-56 (74)
131 1xi3_A Thiamine phosphate pyro 61.1 28 0.00097 32.0 8.4 54 1-56 129-189 (215)
132 1x3u_A Transcriptional regulat 60.2 3.3 0.00011 32.5 1.5 49 90-138 15-63 (79)
133 3lab_A Putative KDPG (2-keto-3 59.5 39 0.0013 32.9 9.3 62 6-68 42-103 (217)
134 1ujp_A Tryptophan synthase alp 59.1 11 0.00038 37.6 5.5 55 16-71 80-140 (271)
135 3tqv_A Nicotinate-nucleotide p 57.1 23 0.0008 35.9 7.5 54 16-71 186-239 (287)
136 3l0g_A Nicotinate-nucleotide p 56.0 24 0.00081 36.1 7.4 54 16-71 195-248 (300)
137 2p7v_B Sigma-70, RNA polymeras 55.3 6.7 0.00023 30.2 2.5 47 90-136 4-55 (68)
138 4fxs_A Inosine-5'-monophosphat 55.1 21 0.00071 38.6 7.2 55 1-56 244-299 (496)
139 3q58_A N-acetylmannosamine-6-p 54.6 19 0.00064 34.9 6.1 43 13-57 168-210 (229)
140 3qz6_A HPCH/HPAI aldolase; str 53.9 44 0.0015 33.0 8.8 71 1-71 38-110 (261)
141 2yxb_A Coenzyme B12-dependent 53.0 57 0.0019 29.7 8.8 73 1-74 70-145 (161)
142 1yad_A Regulatory protein TENI 52.7 77 0.0026 29.6 10.0 54 1-56 131-191 (221)
143 1h5y_A HISF; histidine biosynt 49.9 75 0.0026 29.6 9.4 41 15-56 186-226 (253)
144 3igs_A N-acetylmannosamine-6-p 49.4 28 0.00096 33.7 6.4 43 13-57 168-210 (232)
145 3paj_A Nicotinate-nucleotide p 49.3 38 0.0013 34.9 7.6 53 16-70 219-271 (320)
146 3tm8_A BD1817, uncharacterized 48.4 4.2 0.00014 41.5 0.3 46 144-202 196-243 (328)
147 3ajx_A 3-hexulose-6-phosphate 47.9 31 0.0011 31.8 6.3 64 6-69 29-97 (207)
148 2htm_A Thiazole biosynthesis p 47.2 33 0.0011 34.6 6.6 57 16-72 165-227 (268)
149 4avf_A Inosine-5'-monophosphat 47.0 35 0.0012 36.7 7.3 55 1-56 242-297 (490)
150 1ka9_F Imidazole glycerol phos 46.7 57 0.002 30.9 8.1 52 16-68 185-242 (252)
151 4e38_A Keto-hydroxyglutarate-a 46.4 77 0.0026 31.0 9.1 58 5-63 62-119 (232)
152 3gnn_A Nicotinate-nucleotide p 45.7 36 0.0012 34.7 6.8 54 16-71 197-250 (298)
153 2yum_A ZZZ3 protein, zinc fing 45.7 32 0.0011 27.3 5.2 56 143-203 8-66 (75)
154 1rd5_A Tryptophan synthase alp 44.9 20 0.0007 34.8 4.7 56 15-71 82-139 (262)
155 2vws_A YFAU, 2-keto-3-deoxy su 44.3 1.1E+02 0.0038 30.0 10.0 71 1-71 40-112 (267)
156 3f4w_A Putative hexulose 6 pho 44.1 51 0.0017 30.4 7.1 59 13-71 38-99 (211)
157 3r2g_A Inosine 5'-monophosphat 44.0 38 0.0013 35.3 6.8 55 1-56 113-168 (361)
158 2v5j_A 2,4-dihydroxyhept-2-ENE 43.9 1.1E+02 0.0037 30.6 10.0 70 1-70 61-132 (287)
159 2w6r_A Imidazole glycerol phos 43.6 36 0.0012 32.7 6.2 54 3-57 47-103 (266)
160 3usb_A Inosine-5'-monophosphat 43.2 41 0.0014 36.4 7.2 55 1-56 269-324 (511)
161 4ef8_A Dihydroorotate dehydrog 43.0 23 0.00079 36.8 5.0 59 16-74 265-330 (354)
162 4fo4_A Inosine 5'-monophosphat 42.7 46 0.0016 34.7 7.2 55 1-56 121-176 (366)
163 1x1o_A Nicotinate-nucleotide p 41.5 53 0.0018 33.1 7.2 54 17-71 184-237 (286)
164 3vk5_A MOEO5; TIM barrel, tran 41.0 62 0.0021 32.9 7.6 56 2-58 201-257 (286)
165 1h1y_A D-ribulose-5-phosphate 40.5 53 0.0018 31.2 6.8 56 1-57 139-201 (228)
166 3o63_A Probable thiamine-phosp 40.4 71 0.0024 31.2 7.8 55 1-56 156-218 (243)
167 2c6q_A GMP reductase 2; TIM ba 39.6 58 0.002 33.5 7.3 54 2-56 134-188 (351)
168 1o4u_A Type II quinolic acid p 38.4 61 0.0021 32.7 7.1 55 16-72 180-235 (285)
169 3ovp_A Ribulose-phosphate 3-ep 38.3 1.3E+02 0.0045 28.8 9.3 55 1-56 135-196 (228)
170 3f4w_A Putative hexulose 6 pho 38.3 72 0.0025 29.4 7.2 41 15-56 146-186 (211)
171 1jcn_A Inosine monophosphate d 38.2 62 0.0021 34.7 7.6 55 1-56 268-323 (514)
172 1tty_A Sigma-A, RNA polymerase 37.5 21 0.00071 28.9 2.9 49 87-135 14-67 (87)
173 1dxe_A 2-dehydro-3-deoxy-galac 36.7 1.9E+02 0.0063 28.1 10.2 70 1-70 41-112 (256)
174 1thf_D HISF protein; thermophI 36.4 1.3E+02 0.0046 28.3 9.0 40 16-56 184-223 (253)
175 3clo_A Transcriptional regulat 36.1 17 0.00058 35.2 2.5 49 90-138 196-244 (258)
176 1wv2_A Thiazole moeity, thiazo 36.1 32 0.0011 34.6 4.5 56 16-72 176-236 (265)
177 3inp_A D-ribulose-phosphate 3- 35.3 59 0.002 32.0 6.3 58 14-71 72-130 (246)
178 1qpo_A Quinolinate acid phosph 35.1 90 0.0031 31.4 7.7 55 16-72 182-236 (284)
179 2e6f_A Dihydroorotate dehydrog 35.1 36 0.0012 33.8 4.8 57 16-72 232-295 (314)
180 1ka9_F Imidazole glycerol phos 34.8 91 0.0031 29.5 7.5 54 3-57 48-104 (252)
181 4gj1_A 1-(5-phosphoribosyl)-5- 34.4 1.3E+02 0.0044 29.1 8.6 54 2-56 167-223 (243)
182 1y0e_A Putative N-acetylmannos 33.9 66 0.0023 29.9 6.2 42 15-57 163-204 (223)
183 3ffs_A Inosine-5-monophosphate 33.8 63 0.0022 34.1 6.6 54 1-56 157-211 (400)
184 3tjx_A Dihydroorotate dehydrog 33.6 40 0.0014 34.4 5.0 59 16-74 265-330 (354)
185 1xm3_A Thiazole biosynthesis p 32.6 50 0.0017 32.4 5.3 42 15-57 166-207 (264)
186 1ep3_A Dihydroorotate dehydrog 32.6 36 0.0012 33.4 4.3 39 16-55 230-268 (311)
187 3oix_A Putative dihydroorotate 32.5 43 0.0015 34.5 5.0 41 16-56 262-303 (345)
188 2p9j_A Hypothetical protein AQ 32.1 2.4E+02 0.0082 24.1 9.5 41 16-58 42-82 (162)
189 2f9f_A First mannosyl transfer 31.9 1.4E+02 0.0047 26.2 7.7 64 2-74 99-162 (177)
190 3ceu_A Thiamine phosphate pyro 31.5 57 0.0019 30.6 5.3 55 1-56 108-171 (210)
191 2w6r_A Imidazole glycerol phos 30.9 55 0.0019 31.4 5.2 41 16-57 189-229 (266)
192 2tps_A Protein (thiamin phosph 30.9 64 0.0022 30.0 5.5 42 14-56 158-199 (227)
193 3tdn_A FLR symmetric alpha-bet 30.8 74 0.0025 30.3 6.1 54 3-57 52-108 (247)
194 1tqj_A Ribulose-phosphate 3-ep 30.8 51 0.0018 31.6 4.9 57 14-72 49-109 (230)
195 2agk_A 1-(5-phosphoribosyl)-5- 30.0 55 0.0019 32.2 5.1 66 3-68 174-256 (260)
196 3qja_A IGPS, indole-3-glycerol 29.9 1.5E+02 0.0052 29.3 8.4 56 16-72 102-159 (272)
197 1sxj_D Activator 1 41 kDa subu 29.7 1.4E+02 0.0048 29.0 8.0 70 2-74 135-207 (353)
198 3zwt_A Dihydroorotate dehydrog 29.6 76 0.0026 32.9 6.3 41 16-56 285-326 (367)
199 2v82_A 2-dehydro-3-deoxy-6-pho 29.5 91 0.0031 28.8 6.3 42 15-57 134-176 (212)
200 1x41_A Transcriptional adaptor 29.1 90 0.0031 23.7 5.1 47 143-193 8-54 (60)
201 1jr3_A DNA polymerase III subu 29.0 4.1E+02 0.014 25.8 11.7 70 3-74 122-193 (373)
202 1p0k_A Isopentenyl-diphosphate 29.0 92 0.0031 31.5 6.7 46 12-57 235-280 (349)
203 1wa3_A 2-keto-3-deoxy-6-phosph 29.0 1.7E+02 0.0058 26.7 8.1 63 2-68 37-100 (205)
204 2gek_A Phosphatidylinositol ma 28.6 1.2E+02 0.0042 29.5 7.5 65 2-73 284-348 (406)
205 3khj_A Inosine-5-monophosphate 28.6 1E+02 0.0035 31.8 7.0 54 1-56 118-172 (361)
206 1qo2_A Molecule: N-((5-phospho 28.2 89 0.003 29.5 6.1 51 16-67 177-239 (241)
207 3tha_A Tryptophan synthase alp 28.1 83 0.0028 31.2 6.0 55 18-73 78-138 (252)
208 1jub_A Dihydroorotate dehydrog 28.0 62 0.0021 32.0 5.2 41 16-56 229-270 (311)
209 2f6u_A GGGPS, (S)-3-O-geranylg 27.9 81 0.0028 30.8 5.8 55 2-58 165-219 (234)
210 2bfw_A GLGA glycogen synthase; 27.6 1.6E+02 0.0055 25.8 7.4 63 2-73 117-179 (200)
211 1izc_A Macrophomate synthase i 27.6 1.5E+02 0.0052 30.4 8.1 71 1-71 64-139 (339)
212 1eep_A Inosine 5'-monophosphat 27.2 1.1E+02 0.0039 31.6 7.2 55 1-56 166-221 (404)
213 4af0_A Inosine-5'-monophosphat 27.2 1.1E+02 0.0036 33.9 7.1 54 1-55 294-348 (556)
214 1yxy_A Putative N-acetylmannos 26.8 84 0.0029 29.5 5.6 41 15-57 175-215 (234)
215 1wbh_A KHG/KDPG aldolase; lyas 26.7 1.9E+02 0.0066 27.4 8.2 55 6-61 45-99 (214)
216 3o07_A Pyridoxine biosynthesis 26.5 49 0.0017 33.7 4.0 60 15-75 186-252 (291)
217 1qap_A Quinolinic acid phospho 26.3 1.5E+02 0.0052 29.8 7.7 51 17-69 197-247 (296)
218 1ccw_A Protein (glutamate muta 26.2 1.6E+02 0.0056 25.7 7.1 71 1-71 55-133 (137)
219 3hug_A RNA polymerase sigma fa 26.2 26 0.00088 28.4 1.6 41 89-129 35-76 (92)
220 1vhc_A Putative KHG/KDPG aldol 26.1 2.1E+02 0.0073 27.3 8.4 54 6-60 46-99 (224)
221 3kts_A Glycerol uptake operon 26.0 74 0.0025 30.4 5.0 46 10-57 134-179 (192)
222 2z6i_A Trans-2-enoyl-ACP reduc 25.9 1.6E+02 0.0054 29.6 7.8 55 1-56 131-190 (332)
223 1vrd_A Inosine-5'-monophosphat 25.8 1.3E+02 0.0044 31.9 7.4 55 1-56 250-305 (494)
224 4fyk_A Deoxyribonucleoside 5'- 25.5 75 0.0026 29.2 4.8 68 2-73 70-141 (152)
225 4gmf_A Yersiniabactin biosynth 25.5 80 0.0027 32.6 5.6 34 40-73 84-117 (372)
226 3o9z_A Lipopolysaccaride biosy 25.4 1.8E+02 0.0063 28.7 8.1 48 25-72 69-120 (312)
227 3s2u_A UDP-N-acetylglucosamine 25.4 1.3E+02 0.0044 30.2 7.0 65 2-74 254-324 (365)
228 3vzx_A Heptaprenylglyceryl pho 25.3 2.8E+02 0.0095 27.0 9.1 55 2-58 155-209 (228)
229 2o6l_A UDP-glucuronosyltransfe 25.0 2.1E+02 0.0071 24.7 7.6 56 15-73 96-153 (170)
230 3i65_A Dihydroorotate dehydrog 24.4 51 0.0018 35.0 3.9 41 16-56 332-373 (415)
231 1sxj_A Activator 1 95 kDa subu 24.1 4.7E+02 0.016 27.6 11.5 71 2-74 150-224 (516)
232 1k1e_A Deoxy-D-mannose-octulos 24.0 3.7E+02 0.013 23.6 10.1 43 16-60 41-83 (180)
233 3fro_A GLGA glycogen synthase; 24.0 1.6E+02 0.0054 29.0 7.3 63 2-73 332-394 (439)
234 3bw2_A 2-nitropropane dioxygen 23.8 2E+02 0.0067 29.3 8.1 42 14-56 195-236 (369)
235 3qja_A IGPS, indole-3-glycerol 23.7 86 0.0029 31.1 5.2 42 16-57 200-242 (272)
236 2lnd_A De novo designed protei 23.7 2.6E+02 0.0089 23.4 7.2 48 28-75 51-102 (112)
237 1sxj_E Activator 1 40 kDa subu 23.6 2.4E+02 0.0083 27.4 8.6 71 1-74 135-208 (354)
238 3bo9_A Putative nitroalkan dio 23.5 1.4E+02 0.0049 29.9 7.0 55 1-56 145-204 (326)
239 3beo_A UDP-N-acetylglucosamine 23.5 2E+02 0.0068 27.8 7.8 58 2-73 284-341 (375)
240 1thf_D HISF protein; thermophI 23.3 1.1E+02 0.0038 28.8 5.8 41 16-57 63-103 (253)
241 2fli_A Ribulose-phosphate 3-ep 23.3 1.6E+02 0.0054 27.1 6.7 54 2-56 133-197 (220)
242 1rd5_A Tryptophan synthase alp 23.2 1.3E+02 0.0043 29.0 6.2 42 15-57 189-230 (262)
243 1h5y_A HISF; histidine biosynt 22.9 1.2E+02 0.0041 28.1 5.9 41 15-56 65-105 (253)
244 2ayx_A Sensor kinase protein R 22.9 77 0.0026 30.0 4.6 57 1-73 49-105 (254)
245 1qv9_A F420-dependent methylen 22.4 1.4E+02 0.0047 30.0 6.2 58 1-60 65-122 (283)
246 4adt_A Pyridoxine biosynthetic 22.3 1.8E+02 0.0061 29.3 7.3 57 16-73 196-259 (297)
247 2y88_A Phosphoribosyl isomeras 22.2 1.4E+02 0.0048 28.0 6.2 41 15-56 181-224 (244)
248 1vcf_A Isopentenyl-diphosphate 22.0 1.2E+02 0.0043 30.4 6.1 47 13-59 241-288 (332)
249 1wa3_A 2-keto-3-deoxy-6-phosph 21.8 59 0.002 29.9 3.4 41 15-56 137-177 (205)
250 2khz_A C-MYC-responsive protei 21.8 1.7E+02 0.0059 26.5 6.5 71 1-75 78-152 (165)
251 2gjl_A Hypothetical protein PA 21.8 2.1E+02 0.0072 28.5 7.7 42 14-56 159-200 (328)
252 1vzw_A Phosphoribosyl isomeras 21.3 1.1E+02 0.0036 29.0 5.1 41 15-56 178-221 (244)
253 1jvn_A Glutamine, bifunctional 21.0 94 0.0032 33.9 5.3 52 16-68 485-543 (555)
254 2yus_A SWI/SNF-related matrix- 20.8 71 0.0024 26.0 3.2 47 143-194 18-64 (79)
255 2yw3_A 4-hydroxy-2-oxoglutarat 20.8 89 0.0031 29.5 4.5 58 15-74 138-200 (207)
256 1viz_A PCRB protein homolog; s 20.8 2.2E+02 0.0075 27.8 7.4 54 3-58 158-211 (240)
257 3jr2_A Hexulose-6-phosphate sy 20.7 1.9E+02 0.0063 27.1 6.7 58 14-71 45-105 (218)
258 1nvm_A HOA, 4-hydroxy-2-oxoval 20.2 1.6E+02 0.0054 30.0 6.5 59 13-71 67-129 (345)
259 1geq_A Tryptophan synthase alp 20.1 1.6E+02 0.0055 27.7 6.2 42 15-57 179-220 (248)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.76 E-value=4.1e-19 Score=143.25 Aligned_cols=61 Identities=64% Similarity=1.034 Sum_probs=58.8
Q ss_pred hhhhhhhhchhhhhHHHHHHHHhcccchhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHh
Q 040406 139 PKKAKVVWTNSLHNRFLQAIRHITLEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKRV 199 (566)
Q Consensus 139 ~KKarL~WTsELHeKFLaAIgKLGlEKAIPKrILElMnvpGLTrEEVaSHLQKyrl~lkrl 199 (566)
.++++++||.+||++|+.||.+||.++|+|++||++|+++|||+++|+|||||||+.++|+
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~ 63 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 5688999999999999999999999999999999999999999999999999999999886
No 2
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.66 E-value=8.9e-16 Score=144.76 Aligned_cols=141 Identities=22% Similarity=0.248 Sum_probs=118.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhcCCCc
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKKGKSI 80 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~~~~~ 80 (566)
||+||+|+.||+++|+++++.|++..+.+|||++|+..+.+.+.++++.||++||.||++.++|..+|+.+++.......
T Consensus 52 ~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~ 131 (215)
T 1a04_A 52 PDLILLDLNMPGMNGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGEMVLSE 131 (215)
T ss_dssp CSEEEEETTSTTSCHHHHHHHHHHSCCCSEEEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSCCCCCT
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcCCeecCH
Confidence 79999999999999999999999998899999999999999999999999999999999999999999999865322111
Q ss_pred -chhhh-----------hhhccCCchHHHHHHhhhccCCchhHHHHhhhccccccccccccccccccccchhh
Q 040406 81 -FTEEK-----------SSLANGSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENAAAPKK 141 (566)
Q Consensus 81 -l~~e~-----------~~l~~~lS~re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~~lekl~~~s~KK 141 (566)
..... ......++.+|.+++..+.+|.++.+|++...++.++++.+.+....|+....+.+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~vl~~l~~g~s~~~Ia~~l~is~~TV~~hi~~i~~Kl~~~~r~~ 204 (215)
T 1a04_A 132 ALTPVLAASLRANRATTERDVNQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVE 204 (215)
T ss_dssp TTHHHHHHHC-------CCCGGGSCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCCSHHH
T ss_pred HHHHHHHHHhcccccCCCccccCCCHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHcCCCCHHH
Confidence 10000 01123489999999999999999999999999999999999988888877666443
No 3
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.64 E-value=4e-16 Score=148.98 Aligned_cols=139 Identities=11% Similarity=0.001 Sum_probs=116.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHH-hCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhcCCC
Q 040406 1 IDLVITDLHMPEMNGLELQKEINE-EFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKKGKS 79 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~-~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~~~~ 79 (566)
||+||+|+.||++||++++++|++ ..+++|||++|+..+......+++.||++||.||++.++|..+|+.+++......
T Consensus 55 ~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~ 134 (225)
T 3klo_A 55 IQMLVIDYSRISDDVLTDYSSFKHISCPDAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDEMWLT 134 (225)
T ss_dssp CCEEEEEGGGCCHHHHHHHHHHHHHHCTTCEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTCCBCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhhCCCCcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCCCEeeC
Confidence 799999999999999999999999 7999999999999998888999999999999999999999999999875432111
Q ss_pred cc-hhhh------------hhhccCCchHHHHHHhhhccCCchhHHHHhhhccccccccccccccccccccch
Q 040406 80 IF-TEEK------------SSLANGSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENAAAP 139 (566)
Q Consensus 80 ~l-~~e~------------~~l~~~lS~re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~~lekl~~~s~ 139 (566)
.. .... ......++.+|.+++..+.+|.+..+|++...++.+++..+.+....++....+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~vL~~l~~g~s~~~Ia~~l~~s~~Tv~~~i~~l~~KL~~~~~ 207 (225)
T 3klo_A 135 RKLAQEYILHYRAGNSVVTSQMYAKLTKREQQIIKLLGSGASNIEIADKLFVSENTVKTHLHNVFKKINAKNR 207 (225)
T ss_dssp HHHHHHHHHHHHTTCCCCCCHHHHTSCHHHHHHHHHHTTTCCHHHHHHHTTCCHHHHHHHHHHHTTTSCCSSH
T ss_pred HHHHHHHHHHhhcccccccccccccCCHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCH
Confidence 00 0000 011235899999999999999999999999999999999998888888776654
No 4
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.62 E-value=7.6e-16 Score=144.22 Aligned_cols=138 Identities=14% Similarity=0.258 Sum_probs=115.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhcCCCc
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKKGKSI 80 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~~~~~ 80 (566)
||+||+|+.||+++|+++++.|++..+.+|||++|+..+...+.++++.||++||.||++.++|..+|+.+++.......
T Consensus 49 ~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~ 128 (208)
T 1yio_A 49 HGCLVLDMRMPGMSGIELQEQLTAISDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLNAERRQ 128 (208)
T ss_dssp CEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhhhhhhHH
Confidence 79999999999999999999999988999999999999888889999999999999999999999999988765321110
Q ss_pred ch---hhhhhhccCCchHHHHHHhhhccCCchhHHHHhhhccccccccccccccccccccc
Q 040406 81 FT---EEKSSLANGSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENAAA 138 (566)
Q Consensus 81 l~---~e~~~l~~~lS~re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~~lekl~~~s 138 (566)
.. .........++.+|.+++..+.+|.++.+|++...++.++++.+.+....++....
T Consensus 129 ~~~~~~~~~~~~~~Lt~rE~~vl~~l~~g~s~~~Ia~~l~is~~TV~~~~~~i~~Kl~~~~ 189 (208)
T 1yio_A 129 ARETQDQLEQLFSSLTGREQQVLQLTIRGLMNKQIAGELGIAEVTVKVHRHNIMQKLNVRS 189 (208)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHcCCcHHHHHHHcCCCHHHHHHHHHHHHHHhCCCC
Confidence 00 01112234689999999999999999999999999999999888877777765544
No 5
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.57 E-value=4.6e-15 Score=134.95 Aligned_cols=73 Identities=30% Similarity=0.616 Sum_probs=68.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHh--CCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVT 73 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~--~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~ 73 (566)
||+||+|+.||+|||++++++||.. .+++|||++|+..+.+...+|+++||++||.||++.++|..+|+++++
T Consensus 58 ~DlillD~~MP~mdG~el~~~ir~~~~~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 132 (134)
T 3to5_A 58 FDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFE 132 (134)
T ss_dssp CSEEEEESCCSSSCHHHHHHHHHHSTTTTTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 7999999999999999999999963 578999999999999999999999999999999999999999998763
No 6
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.57 E-value=1.1e-15 Score=146.49 Aligned_cols=140 Identities=14% Similarity=0.186 Sum_probs=118.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhcCCCc
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKKGKSI 80 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~~~~~ 80 (566)
||+||+|+.||+++|+++++.|++..+.+|||++|+..+.....++++.||++||.||++.++|..+|+.+++.......
T Consensus 48 ~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~ 127 (225)
T 3c3w_A 48 PDVAVLDVRLPDGNGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGRSLLDN 127 (225)
T ss_dssp CSEEEECSEETTEEHHHHHHHHHHHCTTCEEEEGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHGGGSCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcCCeeeCH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999875432111
Q ss_pred c-hhh----hh------hhccCCchHHHHHHhhhccCCchhHHHHhhhccccccccccccccccccccchh
Q 040406 81 F-TEE----KS------SLANGSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENAAAPK 140 (566)
Q Consensus 81 l-~~e----~~------~l~~~lS~re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~~lekl~~~s~K 140 (566)
. ... .. .....++.+|.+++..+.+|.++.+|++...++.++++.+.+....|+....+.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~LT~rE~~vL~~l~~g~s~~eIa~~l~is~~TV~~hi~~l~~KL~~~~r~ 198 (225)
T 3c3w_A 128 RAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRT 198 (225)
T ss_dssp HHHHHHHHHHHHHHHHSCTTTTSCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCCSSC
T ss_pred HHHHHHHHhcccccccccccCCCCHHHHHHHHHHHCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCHH
Confidence 0 000 00 112458999999999999999999999999999999999988887777665543
No 7
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.52 E-value=4.6e-14 Score=133.46 Aligned_cols=136 Identities=17% Similarity=0.177 Sum_probs=112.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhcCCCc
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKKGKSI 80 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~~~~~ 80 (566)
||+||+|+.||+++|+++++.|++..+.+|||++|+..+.....++++.||++||.||++.++|..+|+.+++.......
T Consensus 44 ~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~ 123 (220)
T 1p2f_A 44 FHVVVLDVMLPDYSGYEICRMIKETRPETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLEREKKGLY 123 (220)
T ss_dssp CSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHCCCSEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHccccccCc
Confidence 79999999999999999999999988999999999999999999999999999999999999999999999876431100
Q ss_pred ----c--hhhh-----hhhccCCchHHHHHHhhhccC----CchhHHHHhhh---ccccccccccccccccccc
Q 040406 81 ----F--TEEK-----SSLANGSSAEKISFLHDIVSG----SSMIEEKESKT---NSKRKASKRRKDELEGENA 136 (566)
Q Consensus 81 ----l--~~e~-----~~l~~~lS~re~evL~~IaqG----sS~~EIae~k~---IS~~k~~~~~k~~lekl~~ 136 (566)
. .... ......++.+|.+++..+.++ .+..+|++... ++.+++..+.+....++..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~vl~~l~~~~~~~~s~~~Ia~~l~~~~~s~~tv~~~i~~l~~Kl~~ 197 (220)
T 1p2f_A 124 DFGDLKIDATGFTVFLKGKRIHLPKKEFEILLFLAENAGKVVTREKLLETFWEDPVSPRVVDTVIKRIRKAIED 197 (220)
T ss_dssp EETTEEEETTTTEEEETTEECCCCHHHHHHHHHHHHTTTSCEEHHHHHHHHCSSCCCTHHHHHHHHHHHHHHCS
T ss_pred ccccEEEECCCCEEEECCEEEecCHHHHHHHHHHHHCCCceEcHHHHHHHHhCCCCCcchHHHHHHHHHHHHhc
Confidence 0 0000 011235899999999999999 99999999988 8888888877766665543
No 8
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.52 E-value=1.5e-14 Score=141.53 Aligned_cols=134 Identities=19% Similarity=0.274 Sum_probs=106.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhcCCCc
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKKGKSI 80 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~~~~~ 80 (566)
|||||+|+.||+++|++++++|++ .+.+|||++|+..+.+.+.++++.||++||.||++.++|..+|+.+++.......
T Consensus 82 ~DlvllD~~lp~~~G~~l~~~lr~-~~~~~iI~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~~~~~~~ 160 (249)
T 3q9s_A 82 PDLILLDLGLPDFDGGDVVQRLRK-NSALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQRTSESL 160 (249)
T ss_dssp CSEEEEECCSCHHHHHHHHHHHHT-TCCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCCCCSCCE
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHc-CCCCCEEEEECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhhcccCce
Confidence 799999999999999999999997 6799999999999999999999999999999999999999999998864321111
Q ss_pred c------hhhh-----hhhccCCchHHHHHHhhhccC----CchhHHHHh-----hhcccccccccccccccccc
Q 040406 81 F------TEEK-----SSLANGSSAEKISFLHDIVSG----SSMIEEKES-----KTNSKRKASKRRKDELEGEN 135 (566)
Q Consensus 81 l------~~e~-----~~l~~~lS~re~evL~~IaqG----sS~~EIae~-----k~IS~~k~~~~~k~~lekl~ 135 (566)
. .... ......++.+|.++|..+.++ .+..+|++. ..++.+++..+.+....|+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~LT~rE~evL~ll~~g~~~~~s~~eIa~~l~~~~l~~s~~TV~~hi~~lr~KL~ 235 (249)
T 3q9s_A 161 SMGDLTLDPQKRLVTYKGEELRLSPKEFDILALLIRQPGRVYSRQEIGQEIWQGRLPEGSNVVDVHMANLRAKLR 235 (249)
T ss_dssp EETTEEEETTTTEEEETTEEECCCHHHHHHHHHHHHSTTCCCCHHHHHHHHHTTCSCTTCSHHHHHHHHHHHHHC
T ss_pred eECCEEEecccCEEEECCEEeecCHHHHHHHHHHHHCCCceEcHHHHHHHhcCCCCCCCccCHHHHHHHHHHHhh
Confidence 0 0000 011235899999999999999 999999984 44555666666655555543
No 9
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.52 E-value=5.3e-14 Score=136.61 Aligned_cols=130 Identities=16% Similarity=0.175 Sum_probs=101.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhcCCCc
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKKGKSI 80 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~~~~~ 80 (566)
||+||+|+.||++||++++++|++..+.+|||++|+..+...+.++++.||++||.||++.++|..+|+.+++.......
T Consensus 68 ~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~~~~~ 147 (250)
T 3r0j_A 68 PDAVILDVXMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGKGNK 147 (250)
T ss_dssp CSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHHHCC---
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhhccccc
Confidence 79999999999999999999999998899999999999999999999999999999999999999999999875432110
Q ss_pred chh-------------hh-----hhhccCCchHHHHHHhhhccC----CchhHHHHhh-----hccccccccccccc
Q 040406 81 FTE-------------EK-----SSLANGSSAEKISFLHDIVSG----SSMIEEKESK-----TNSKRKASKRRKDE 130 (566)
Q Consensus 81 l~~-------------e~-----~~l~~~lS~re~evL~~IaqG----sS~~EIae~k-----~IS~~k~~~~~k~~ 130 (566)
... .. ......++.+|.++|..+..+ .+..+|++.. .++.+++..+.+..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~rE~~iL~~l~~~~~~~~s~~~i~~~lw~~~~~~~~~tv~~~i~~l 224 (250)
T 3r0j_A 148 EPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYL 224 (250)
T ss_dssp ---CCEEEETTEEEETTTCCEEETTEEECCCHHHHHHHHHHHHTTTCCBCHHHHHHHHTTTSCCSCTHHHHHHHHHH
T ss_pred cccceEEEECCEEEeccccEEEECCEEEecCHHHHHHHHHHHHCCCceEcHHHHHHHHcCCCCCCCccCHHHHHHHH
Confidence 000 00 011235899999999998766 8888888765 23444444444333
No 10
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.52 E-value=1.2e-14 Score=134.80 Aligned_cols=124 Identities=11% Similarity=0.236 Sum_probs=96.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhcCCCc
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKKGKSI 80 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~~~~~ 80 (566)
||+||+|+.||+++|++++++|++..+++|||++|+..+.+.+.+|++.||++||.||++.++|..+|+.+++......
T Consensus 52 ~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~~~~~~~- 130 (184)
T 3rqi_A 52 FEFITVXLHLGNDSGLSLIAPLCDLQPDARILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEVQAEE- 130 (184)
T ss_dssp CSEEEECSEETTEESHHHHHHHHHHCTTCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHHHHHHHH-
T ss_pred CCEEEEeccCCCccHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHHhhhcc-
Confidence 7999999999999999999999999999999999999999999999999999999999999999999988876543111
Q ss_pred chhhhhhhccCCchHHHHHHhhhcc--CCchhHHHHhhhcccccccccc
Q 040406 81 FTEEKSSLANGSSAEKISFLHDIVS--GSSMIEEKESKTNSKRKASKRR 127 (566)
Q Consensus 81 l~~e~~~l~~~lS~re~evL~~Iaq--GsS~~EIae~k~IS~~k~~~~~ 127 (566)
.........++..+.+.+..+.. +.+..++++...++..+...+.
T Consensus 131 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~l~is~~tv~~~l 177 (184)
T 3rqi_A 131 --ALENPVVLSVDRLEWEHIQRVLAENNNNISATARALNMHRRTLQRKL 177 (184)
T ss_dssp --HHHSCCCCC---CHHHHHHHHHHHTTSCHHHHHHHHTSCHHHHHHHH
T ss_pred --cccCcccccHHHHHHHHHHHHHHhccccHHHHHHHcCCcHHHHHHHH
Confidence 11111122344455555544443 7888899988888887765544
No 11
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.51 E-value=3.1e-14 Score=134.57 Aligned_cols=135 Identities=19% Similarity=0.205 Sum_probs=109.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhcCCCc
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKKGKSI 80 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~~~~~ 80 (566)
||+||+|+.||+++|+++++.|++..+++|||++|+..+.....++++.||++||.||++.++|..+|+.+++.......
T Consensus 47 ~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~~~~~ 126 (225)
T 1kgs_A 47 FDVVILDIMLPVHDGWEILKSMRESGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKSESKS 126 (225)
T ss_dssp CSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHHCCSCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhhcccccC
Confidence 79999999999999999999999988999999999999988999999999999999999999999999999876432111
Q ss_pred --c-------hhhh-----hhhccCCchHHHHHHhhhccC----CchhHHHHhhh-----cccccccccccccccccc
Q 040406 81 --F-------TEEK-----SSLANGSSAEKISFLHDIVSG----SSMIEEKESKT-----NSKRKASKRRKDELEGEN 135 (566)
Q Consensus 81 --l-------~~e~-----~~l~~~lS~re~evL~~IaqG----sS~~EIae~k~-----IS~~k~~~~~k~~lekl~ 135 (566)
. .... ......++.+|.+++..+.++ .+..+|++... ++.++++.+.+....++.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~vL~~l~~~~~~~~s~~eIa~~l~~~~~~~s~~tv~~hi~~l~~Kl~ 204 (225)
T 1kgs_A 127 TKLVCGDLILDTATKKAYRGSKEIDLTKKEYQILEYLVMNKNRVVTKEELQEHLWSFDDEVFSDVLRSHIKNLRKKVD 204 (225)
T ss_dssp SEEEETTEEEETTTTEEEETTEEECCCHHHHHHHHHHHHTTTSCEEHHHHHHHCC-----CHHHHHHHHHHHHHHHHH
T ss_pred ceEEECCEEEecccCEEEECCEEEecCHHHHHHHHHHHhCCCcccCHHHHHHHhcCCCCCCCcchHHHHHHHHHHHhh
Confidence 0 0000 011235899999999999999 99999998865 677777776666555543
No 12
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.47 E-value=6.9e-14 Score=132.85 Aligned_cols=135 Identities=16% Similarity=0.134 Sum_probs=109.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhcC--C
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKKG--K 78 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~~--~ 78 (566)
||+||+|+.||+++|+++++.|++..+.+|||++|+..+.....++++.||++||.||++.++|..+|+.+++.... .
T Consensus 52 ~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~ 131 (233)
T 1ys7_A 52 PDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTAT 131 (233)
T ss_dssp CSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhcccccc
Confidence 79999999999999999999999988899999999999888888999999999999999999999999999876432 1
Q ss_pred ---Ccch-hh------h-----hhhccCCchHHHHHHhhhccC----CchhHHHHhhh-----ccccccccccccccccc
Q 040406 79 ---SIFT-EE------K-----SSLANGSSAEKISFLHDIVSG----SSMIEEKESKT-----NSKRKASKRRKDELEGE 134 (566)
Q Consensus 79 ---~~l~-~e------~-----~~l~~~lS~re~evL~~IaqG----sS~~EIae~k~-----IS~~k~~~~~k~~lekl 134 (566)
.... .. . ......++.+|.+++..+.+| .+..+|++... ++.+++..+.+....++
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~vL~~l~~g~~~~~s~~~Ia~~l~~~~~~~s~~tv~~hi~~l~~Kl 211 (233)
T 1ys7_A 132 SSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKL 211 (233)
T ss_dssp CCCCEEEETTEEEETTTTEEEETTEECCCCHHHHHHHHHHHHTTTCCBCHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHH
T ss_pred ccCcccccCCeEEccCccEEEECCEEeccCHHHHHHHHHHHhCCCCeEcHHHHHHHhcCcccCCCccCHHHHHHHHHHHh
Confidence 1000 00 0 011235899999999999999 99999999877 77777777776665554
Q ss_pred c
Q 040406 135 N 135 (566)
Q Consensus 135 ~ 135 (566)
.
T Consensus 212 ~ 212 (233)
T 1ys7_A 212 E 212 (233)
T ss_dssp H
T ss_pred c
Confidence 3
No 13
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.42 E-value=1.6e-13 Score=132.00 Aligned_cols=134 Identities=16% Similarity=0.232 Sum_probs=106.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhcCCCc
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKKGKSI 80 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~~~~~ 80 (566)
||+||+|+.||+++|+++++.|++.. .+|||++|+..+...+.++++.||++||.||++.++|..+|+.+++.......
T Consensus 50 ~dlvilD~~l~~~~g~~~~~~lr~~~-~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~ 128 (238)
T 2gwr_A 50 PDLVLLDLMLPGMNGIDVCRVLRADS-GVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDDEPA 128 (238)
T ss_dssp CSEEEEESSCSSSCHHHHHHHHHTTC-CCCEEEEEETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCCCSSCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCC-CCcEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhcccCcc
Confidence 79999999999999999999999865 89999999999988889999999999999999999999999988754321100
Q ss_pred --c-------hhhh-----hhhccCCchHHHHHHhhhccC----CchhHHHHhh-----hcccccccccccccccccc
Q 040406 81 --F-------TEEK-----SSLANGSSAEKISFLHDIVSG----SSMIEEKESK-----TNSKRKASKRRKDELEGEN 135 (566)
Q Consensus 81 --l-------~~e~-----~~l~~~lS~re~evL~~IaqG----sS~~EIae~k-----~IS~~k~~~~~k~~lekl~ 135 (566)
. .... ......++.+|.+++..+.++ .+..+|++.. .++.+++..+.+....++.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~LT~rE~~vL~~l~~~~~~~~s~~eIa~~lw~~~~~~s~~tV~~hi~~lr~KL~ 206 (238)
T 2gwr_A 129 EMLSIADVEIDVPAHKVTRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGYRHPADTRLVNVHVQRLRAKVE 206 (238)
T ss_dssp CEEEETTEEEETTTTEEEETTEEECCCHHHHHHHHHHHHSTTCCBCHHHHHHHHTCCC--CCTHHHHHHHHHHHHHHC
T ss_pred cceecCceEEcccccEEEECCEEcccCHHHHHHHHHHHHCCCceecHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhc
Confidence 0 0000 011235899999999999999 9999999987 6777777777766655554
No 14
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.42 E-value=6.2e-13 Score=116.29 Aligned_cols=74 Identities=22% Similarity=0.399 Sum_probs=68.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHh-CCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEE-FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~-~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
||+||+|+.||+++|+++++.|++. .+.+|||++|+..+.....++++.||++||.||++.++|..+|++++..
T Consensus 53 ~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 127 (133)
T 2r25_B 53 YNMIFMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAA 127 (133)
T ss_dssp CSEEEECSCCSSSCHHHHHHHHHHHSCCCSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTT
T ss_pred CCEEEEeCCCCCCChHHHHHHHHhhcCCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Confidence 6999999999999999999999974 5679999999999999999999999999999999999999999988643
No 15
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.42 E-value=2.4e-13 Score=129.13 Aligned_cols=134 Identities=16% Similarity=0.227 Sum_probs=107.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhcCCC-
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKKGKS- 79 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~~~~- 79 (566)
||+||+|+.||+++|+++++.|++. +.+|||++|+..+.....++++.||++||.||++.++|..+|+.+++......
T Consensus 49 ~dlvllD~~l~~~~g~~~~~~l~~~-~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~~~~~ 127 (230)
T 2oqr_A 49 ADIVLLDLMLPGMSGTDVCKQLRAR-SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDS 127 (230)
T ss_dssp CSEEEEESSCSSSCHHHHHHHHHHH-CSCSEEEEECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTTTTCTTS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHcC-CCCCEEEEeCCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhcccccc
Confidence 7999999999999999999999986 79999999999988889999999999999999999999999999986532111
Q ss_pred -----cch-h------hh-----hhhccCCchHHHHHHhhhccC----CchhHHHHhh-----hcccccccccccccccc
Q 040406 80 -----IFT-E------EK-----SSLANGSSAEKISFLHDIVSG----SSMIEEKESK-----TNSKRKASKRRKDELEG 133 (566)
Q Consensus 80 -----~l~-~------e~-----~~l~~~lS~re~evL~~IaqG----sS~~EIae~k-----~IS~~k~~~~~k~~lek 133 (566)
... . .. ......++.+|.+++..+.++ .+..+|++.. .++.+++..+.+....+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~vL~~l~~~~~~~~s~~~Ia~~lw~~~~~~s~~tv~~hi~~i~~K 207 (230)
T 2oqr_A 128 EMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWGADYVGDTKTLDVHVKRLRSK 207 (230)
T ss_dssp TTCCSCEEETTEEEETTTTEEEESSBCCCCCHHHHHHHHHHHHTTTSCEEHHHHHHHHTSSCCTTHHHHHHHHHHHHHHH
T ss_pred cccccceeecCEEEeccccEEEECCeeeecCHHHHHHHHHHHhCCCceEcHHHHHHHhcCCCCCCCCcCHHHHHHHHHHH
Confidence 000 0 00 011235899999999999998 9999999887 67777777776665555
Q ss_pred cc
Q 040406 134 EN 135 (566)
Q Consensus 134 l~ 135 (566)
+.
T Consensus 208 l~ 209 (230)
T 2oqr_A 208 IE 209 (230)
T ss_dssp HC
T ss_pred Hh
Confidence 43
No 16
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.40 E-value=9.1e-13 Score=113.59 Aligned_cols=72 Identities=26% Similarity=0.450 Sum_probs=67.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHh--CCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAV 72 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~--~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL 72 (566)
||+||+|+.||+++|++++++|++. .+.+|||++|+..+.....++++.||++||.||++.++|..+|++++
T Consensus 47 ~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l 120 (122)
T 3gl9_A 47 PDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLL 120 (122)
T ss_dssp CSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred CCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHh
Confidence 7999999999999999999999875 46899999999999999999999999999999999999999999876
No 17
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.38 E-value=1.6e-12 Score=112.64 Aligned_cols=73 Identities=30% Similarity=0.679 Sum_probs=68.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHh--CCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVT 73 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~--~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~ 73 (566)
||+||+|+.||+++|++++++|++. .+.+|||++|+..+...+.++++.||++||.||++.++|..+|+.++.
T Consensus 52 ~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~ 126 (129)
T 3h1g_A 52 TKVLITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLG 126 (129)
T ss_dssp CCEEEECSCCSSSCHHHHHHHHHTSTTCTTCCEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhc
Confidence 6999999999999999999999974 478999999999999999999999999999999999999999998874
No 18
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.37 E-value=2e-12 Score=113.43 Aligned_cols=75 Identities=23% Similarity=0.432 Sum_probs=69.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHh--CCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSK 75 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~--~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~ 75 (566)
||+||+|+.||+++|++++++|++. .+.+|||++|+..+.....++++.||++||.||++.++|..+|+++++..
T Consensus 49 ~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~ 125 (136)
T 3t6k_A 49 PDALICDVLLPGIDGYTLCKRVRQHPLTKTLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILART 125 (136)
T ss_dssp CSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEEEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC-
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhcc
Confidence 7999999999999999999999974 56899999999999999999999999999999999999999999988643
No 19
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.37 E-value=2.6e-12 Score=110.30 Aligned_cols=73 Identities=25% Similarity=0.507 Sum_probs=69.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVT 73 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~ 73 (566)
||+||+|+.||+++|++++++|++..+.+|||++|+..+.....++++.||++||.||++.++|..+|+++++
T Consensus 48 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 120 (126)
T 1dbw_A 48 NGVLVTDLRMPDMSGVELLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASE 120 (126)
T ss_dssp SEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHH
Confidence 6999999999999999999999998889999999999999999999999999999999999999999998874
No 20
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.36 E-value=4.1e-12 Score=107.60 Aligned_cols=74 Identities=24% Similarity=0.413 Sum_probs=70.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
||+||+|+.||+++|+++++.+++..+.+|||++|+..+.....++++.||++||.||++.++|..+|+++++.
T Consensus 45 ~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 118 (121)
T 2pl1_A 45 PDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (121)
T ss_dssp CSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHHh
Confidence 79999999999999999999999888899999999999999999999999999999999999999999988754
No 21
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.36 E-value=2.4e-12 Score=112.08 Aligned_cols=74 Identities=23% Similarity=0.394 Sum_probs=69.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
||+||+|+.||+++|++++++|++..+.+|||++|+..+.....++++.||++||.||++.++|..+|+++++.
T Consensus 50 ~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 123 (133)
T 3b2n_A 50 PNVVILDIEMPGMTGLEVLAEIRKKHLNIKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNG 123 (133)
T ss_dssp CSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC-
T ss_pred CCEEEEecCCCCCCHHHHHHHHHHHCCCCcEEEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcC
Confidence 79999999999999999999999988899999999999999999999999999999999999999999988743
No 22
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.36 E-value=2e-12 Score=113.87 Aligned_cols=75 Identities=15% Similarity=0.271 Sum_probs=71.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSK 75 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~ 75 (566)
|||||+|+.||+++|++++++|++..+.+|||++|+..+...+.++++.||++||.||++.++|..+|+++++.+
T Consensus 68 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 68 FDILMIDGAALDTAELAAIEKLSRLHPGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp CSEEEEECTTCCHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhh
Confidence 799999999999999999999999999999999999999999999999999999999999999999999998654
No 23
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.35 E-value=2e-12 Score=110.86 Aligned_cols=72 Identities=24% Similarity=0.487 Sum_probs=67.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVT 73 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~ 73 (566)
||+||+|+.||+++|++++++|++.. .+|||++|+..+.....++++.||++||.||++.++|..+|+++++
T Consensus 47 ~dlii~D~~~p~~~g~~~~~~lr~~~-~~~ii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~ 118 (120)
T 3f6p_A 47 PDLILLDIMLPNKDGVEVCREVRKKY-DMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLR 118 (120)
T ss_dssp CSEEEEETTSTTTHHHHHHHHHHTTC-CSCEEEEEESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC-CCCEEEEECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHh
Confidence 79999999999999999999999764 8999999999999999999999999999999999999999998774
No 24
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.35 E-value=4.1e-12 Score=110.41 Aligned_cols=74 Identities=23% Similarity=0.358 Sum_probs=70.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
||+||+|+.||+++|+++++.|++..+.+|||++|+..+.....++++.||++||.||++.++|..+|+++++.
T Consensus 48 ~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 121 (132)
T 3crn_A 48 FNLALFXIKLPDMEGTELLEKAHKLRPGMKKIMVTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDE 121 (132)
T ss_dssp CSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCCCchHHHHHHHHhhCCCCcEEEEeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHhc
Confidence 79999999999999999999999988899999999999999999999999999999999999999999988754
No 25
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.33 E-value=6.5e-12 Score=109.90 Aligned_cols=75 Identities=29% Similarity=0.544 Sum_probs=71.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSK 75 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~ 75 (566)
||+||+|+.||+++|+++++.|++..+.+|||++|+..+.....++++.||++||.||++.++|..+|+++++.+
T Consensus 50 ~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~ 124 (143)
T 3jte_A 50 IDVVITDMKMPKLSGMDILREIKKITPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRK 124 (143)
T ss_dssp CCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999999999999999999998754
No 26
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.33 E-value=4e-12 Score=107.77 Aligned_cols=72 Identities=28% Similarity=0.477 Sum_probs=68.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAV 72 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL 72 (566)
||+||+|+.||+++|+++++++++..+.+|||++|+..+.....++++.||++||.||++.++|..++++++
T Consensus 48 ~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 48 PDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp CSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 799999999999999999999999889999999999999999999999999999999999999999998764
No 27
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.33 E-value=7.1e-12 Score=111.36 Aligned_cols=75 Identities=24% Similarity=0.347 Sum_probs=69.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhC--CCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEF--IHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSK 75 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~--p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~ 75 (566)
||+||+|+.||+++|+++++.|++.. +.+|||++|+..+...+.++++.||++||.||++.++|..+|+++++.+
T Consensus 62 ~dlillD~~lp~~~g~~l~~~l~~~~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 138 (149)
T 1i3c_A 62 PNLILLDLNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESFW 138 (149)
T ss_dssp CSEEEECSCCSSSCHHHHHHHHHHCTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHhCcCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Confidence 69999999999999999999999853 6899999999999899999999999999999999999999999987654
No 28
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.32 E-value=8.1e-12 Score=106.13 Aligned_cols=73 Identities=22% Similarity=0.362 Sum_probs=68.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
||+||+|+.||+++|+++++.+++ .+.+|||++|+..+.....++++.||++||.||++.++|..+|+++++.
T Consensus 47 ~dlvi~d~~l~~~~g~~~~~~l~~-~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 119 (122)
T 1zgz_A 47 VDLILLDINLPDENGLMLTRALRE-RSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 (122)
T ss_dssp CSEEEEESCCSSSCHHHHHHHHHT-TCCCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCChHHHHHHHHh-cCCCCEEEEECCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHHH
Confidence 799999999999999999999998 6789999999999998899999999999999999999999999988754
No 29
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.32 E-value=3.9e-12 Score=108.70 Aligned_cols=72 Identities=26% Similarity=0.427 Sum_probs=68.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAV 72 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL 72 (566)
||+||+|+.||+++|+++++++++..+.+|||++|+..+.....++++.|+++||.||++.++|..+|++++
T Consensus 48 ~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (124)
T 1srr_A 48 PDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYL 119 (124)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEEESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHS
T ss_pred CCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEEEccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHh
Confidence 799999999999999999999999888999999999999989999999999999999999999999998775
No 30
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.31 E-value=8.1e-12 Score=109.70 Aligned_cols=74 Identities=24% Similarity=0.430 Sum_probs=70.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
||+||+|+.||+++|+++++.|++..+.+|||++|+..+.....++++.||++||.||++.++|..+|+++++.
T Consensus 49 ~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 122 (137)
T 3cfy_A 49 PQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKR 122 (137)
T ss_dssp CSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHH
Confidence 79999999999999999999999988899999999999999999999999999999999999999999988764
No 31
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.31 E-value=9.6e-12 Score=106.54 Aligned_cols=74 Identities=31% Similarity=0.546 Sum_probs=69.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHH--hCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINE--EFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~--~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
||+||+|+.||+++|+++++.|++ ..+.+|||++|+..+.....++++.||++||.||++.++|..+|+++++.
T Consensus 50 ~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 125 (128)
T 1jbe_A 50 YGFVISDWNMPNMDGLELLKTIRAXXAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125 (128)
T ss_dssp CCEEEEESCCSSSCHHHHHHHHHC--CCTTCCEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhcccCCCcEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHHH
Confidence 799999999999999999999997 45789999999999999999999999999999999999999999988754
No 32
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.31 E-value=8.9e-12 Score=110.98 Aligned_cols=75 Identities=25% Similarity=0.469 Sum_probs=71.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcC-CcEEEeCCCChHHHHHHHHHHHHhh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASG-AVFYMVKPVNPDALRNVWQYAVTSK 75 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aG-A~dYL~KP~~~eeL~~aI~~vL~~~ 75 (566)
|||||+|+.||+++|+++++.|++..+.+|||++|+..+.....++++.| |++||.||++.++|..+|+++++..
T Consensus 59 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~~ 134 (153)
T 3hv2_A 59 VDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEHQ 134 (153)
T ss_dssp CSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHHh
Confidence 79999999999999999999999999999999999999999999999999 9999999999999999999998654
No 33
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.31 E-value=4.1e-12 Score=109.70 Aligned_cols=75 Identities=16% Similarity=0.233 Sum_probs=68.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSK 75 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~ 75 (566)
||+||+|+.||+++|++++++|++..+.+|||++|+..+.....++++.||++||.||++.++|..+|+++++.+
T Consensus 47 ~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 121 (134)
T 3f6c_A 47 PDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 121 (134)
T ss_dssp CSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEEEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTC
T ss_pred CCEEEEecCCCCCChHHHHHHHHhcCCCCeEEEEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 799999999999999999999999999999999999999888999999999999999999999999999988543
No 34
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.31 E-value=8.3e-12 Score=110.82 Aligned_cols=75 Identities=23% Similarity=0.369 Sum_probs=71.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSK 75 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~ 75 (566)
|||||+|+.||+++|+++++.|++..+.+|||++|+..+.....++++.||++||.||++.++|..+|+++++.+
T Consensus 67 ~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 141 (150)
T 4e7p_A 67 VDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGR 141 (150)
T ss_dssp CSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999988543
No 35
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.30 E-value=5.4e-12 Score=110.25 Aligned_cols=76 Identities=22% Similarity=0.331 Sum_probs=72.2
Q ss_pred CcEEEEeCCCCC--CCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhc
Q 040406 1 IDLVITDLHMPE--MNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKK 76 (566)
Q Consensus 1 pDLVLlDi~MPd--mDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~ 76 (566)
||+||+|+.||+ ++|++++++|++..+.+|||++|+..+...+.++++.||++||.||++.++|..+|++++....
T Consensus 51 ~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~ 128 (136)
T 3kto_A 51 AIGMIIEAHLEDKKDSGIELLETLVKRGFHLPTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAK 128 (136)
T ss_dssp EEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCEEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC
T ss_pred CCEEEEeCcCCCCCccHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhccC
Confidence 699999999999 9999999999999899999999999999999999999999999999999999999999987654
No 36
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.30 E-value=7.4e-12 Score=108.05 Aligned_cols=74 Identities=22% Similarity=0.417 Sum_probs=69.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHh-CCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEE-FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~-~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
||+||+|+.||+++|++++++|++. .+.+|||++|+..+.....++++.||++||.||++.++|..+|+++++.
T Consensus 49 ~dlvllD~~l~~~~g~~~~~~l~~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 123 (130)
T 1dz3_A 49 PDILLLDIIMPHLDGLAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGK 123 (130)
T ss_dssp CSEEEEESCCSSSCHHHHHHHHHHHCSSCCEEEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHC
T ss_pred CCEEEEecCCCCCCHHHHHHHHHhcCCCCCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcC
Confidence 7999999999999999999999986 5788999999999999999999999999999999999999999988754
No 37
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.30 E-value=6.1e-12 Score=109.30 Aligned_cols=75 Identities=27% Similarity=0.433 Sum_probs=71.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSK 75 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~ 75 (566)
||+||+|+.||+++|++++++|++..+.+|||++|+..+.+...++++.||++||.||++.++|..+|+++++..
T Consensus 52 ~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (137)
T 3hdg_A 52 PDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIK 126 (137)
T ss_dssp CSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999999999999999999998754
No 38
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.30 E-value=9.7e-12 Score=110.38 Aligned_cols=76 Identities=28% Similarity=0.471 Sum_probs=71.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHH--hCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhc
Q 040406 1 IDLVITDLHMPEMNGLELQKEINE--EFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKK 76 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~--~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~ 76 (566)
|||||+|+.||+++|++++++|++ ..+.+|||++|+..+...+.++++.||++||.||++.++|..+|+++.+...
T Consensus 60 ~dliilD~~l~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 137 (152)
T 3heb_A 60 AQLVLLDLNLPDMTGIDILKLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGLFFS 137 (152)
T ss_dssp BEEEEECSBCSSSBHHHHHHHHHHSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHhcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 699999999999999999999998 6789999999999999999999999999999999999999999999876543
No 39
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.30 E-value=1.3e-11 Score=104.91 Aligned_cols=73 Identities=33% Similarity=0.521 Sum_probs=68.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
||+||+|+.||+++|+++++.|++. +.+|||++|+..+.....++++.||++||.||++.++|..+|+++++.
T Consensus 48 ~dlvi~D~~l~~~~g~~~~~~l~~~-~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 120 (123)
T 1xhf_A 48 INLVIMDINLPGKNGLLLARELREQ-ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 (123)
T ss_dssp CSEEEECSSCSSSCHHHHHHHHHHH-CCCEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhC-CCCcEEEEECCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 7999999999999999999999987 789999999999998899999999999999999999999999988754
No 40
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.30 E-value=1.2e-11 Score=106.50 Aligned_cols=76 Identities=25% Similarity=0.317 Sum_probs=71.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhC--CCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhc
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEF--IHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKK 76 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~--p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~ 76 (566)
||+||+|+.||+++|+++++.|++.. +.+|||++|+..+.+...++++.|+++||.||++.++|..+|+++++...
T Consensus 56 ~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 133 (140)
T 1k68_A 56 PDLILLXLNLPKKDGREVLAEIKSDPTLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFWL 133 (140)
T ss_dssp CSEEEECSSCSSSCHHHHHHHHHHSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCcccHHHHHHHHHcCcccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHHHc
Confidence 69999999999999999999999876 78999999999999999999999999999999999999999999987654
No 41
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.30 E-value=1.2e-11 Score=109.69 Aligned_cols=75 Identities=17% Similarity=0.352 Sum_probs=71.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSK 75 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~ 75 (566)
|||||+|+.||+++|+++++.|++..+.+|||++|+..+.....++++.||++||.||++.++|..+|+++++..
T Consensus 62 ~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 136 (152)
T 3eul_A 62 PDVALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGR 136 (152)
T ss_dssp CSEEEEETTCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCCCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999998643
No 42
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.29 E-value=8.9e-12 Score=109.39 Aligned_cols=76 Identities=20% Similarity=0.298 Sum_probs=71.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHH--hCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCC-ChHHHHHHHHHHHHhhc
Q 040406 1 IDLVITDLHMPEMNGLELQKEINE--EFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPV-NPDALRNVWQYAVTSKK 76 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~--~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~-~~eeL~~aI~~vL~~~~ 76 (566)
||+||+|+.||+++|+++++.|++ ..+.+|||++|+..+.+...++++.||++||.||+ +.++|..+|+++++.+.
T Consensus 52 ~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~~~ 130 (144)
T 3kht_A 52 YDLIILDIGLPIANGFEVMSAVRKPGANQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYWL 130 (144)
T ss_dssp CSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHHHH
Confidence 799999999999999999999998 67899999999999999999999999999999999 99999999999987654
No 43
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.29 E-value=1.2e-11 Score=104.25 Aligned_cols=72 Identities=31% Similarity=0.494 Sum_probs=67.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVT 73 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~ 73 (566)
||+||+|+.||+++|+++++++++. +.+|||++|+..+.....++++.||++||.||++.++|..+++++++
T Consensus 46 ~dlvl~D~~l~~~~g~~~~~~l~~~-~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~ 117 (120)
T 2a9o_A 46 PDIIILDLMLPEIDGLEVAKTIRKT-SSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117 (120)
T ss_dssp CSEEEECSSCSSSCHHHHHHHHHHH-CCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCEEEEeccCCCCCHHHHHHHHHhC-CCCCEEEEecCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHc
Confidence 7999999999999999999999975 68999999999998888999999999999999999999999998875
No 44
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.29 E-value=4.4e-12 Score=110.84 Aligned_cols=75 Identities=25% Similarity=0.384 Sum_probs=70.7
Q ss_pred CcEEEEeCCCC-CCCHHHHHHHHHH--hCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhh
Q 040406 1 IDLVITDLHMP-EMNGLELQKEINE--EFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSK 75 (566)
Q Consensus 1 pDLVLlDi~MP-dmDG~eLLe~Lr~--~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~ 75 (566)
|||||+|+.|| +++|++++++|++ ..+.+|||++|+..+.....++++.||++||.||++.++|..+|+++++..
T Consensus 51 ~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (140)
T 3lua_A 51 ITLIIMDIAFPVEKEGLEVLSAIRNNSRTANTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKIC 128 (140)
T ss_dssp CSEEEECSCSSSHHHHHHHHHHHHHSGGGTTCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC-
T ss_pred CcEEEEeCCCCCCCcHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhc
Confidence 79999999999 9999999999999 788999999999999999999999999999999999999999999988543
No 45
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.29 E-value=5e-12 Score=111.58 Aligned_cols=74 Identities=23% Similarity=0.478 Sum_probs=64.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
||+||+|+.||+++|+++++.|++..+.+|||++|+..+...+.++++.||++||.||++.++|..+|+++++.
T Consensus 50 ~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 123 (141)
T 3cu5_A 50 PNVLLTDVRMPRMDGIELVDNILKLYPDCSVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQT 123 (141)
T ss_dssp CSEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHHH
Confidence 79999999999999999999999988999999999998888888999999999999999999999999988754
No 46
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.29 E-value=1.7e-11 Score=109.68 Aligned_cols=76 Identities=26% Similarity=0.437 Sum_probs=71.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHh--CCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhc
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKK 76 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~--~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~ 76 (566)
||+||+|+.||+++|+++++.|++. .+.+|||++|+..+.....++++.||++||.||++.++|..+|+++++..+
T Consensus 52 ~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 129 (154)
T 3gt7_A 52 PDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVK 129 (154)
T ss_dssp CSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999986 378999999999999999999999999999999999999999999987654
No 47
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.28 E-value=4.2e-12 Score=120.22 Aligned_cols=128 Identities=15% Similarity=0.139 Sum_probs=103.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHhcCCcEEEeCCC-ChHHHHHHHHHHHHhhcCC
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFI-HLPVMVMSSDDRESVIMKSLASGAVFYMVKPV-NPDALRNVWQYAVTSKKGK 78 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p-~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~-~~eeL~~aI~~vL~~~~~~ 78 (566)
||+|| ||+++|+++++.|++. + ++|||++|+..+...+.++++.||++||.||+ +.++|..+|+.+++... .
T Consensus 45 ~dlvi----lp~~~g~~~~~~lr~~-~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~~-~ 118 (223)
T 2hqr_A 45 YDLVM----VSDKNALSFVSRIKEK-HSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFWG-S 118 (223)
T ss_dssp CSEEE----ECCTTHHHHHHHHHHH-CTTSEEEEEESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSSCC-C
T ss_pred CCEEE----eCCCCHHHHHHHHHhC-CCCCcEEEEECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhcccc-C
Confidence 68888 9999999999999988 7 89999999999999999999999999999999 99999999999876530 0
Q ss_pred Ccch-------hhh-----hhhccCCchHHHHHHhhhccC----CchhHHHHhhh-----ccccccccccccccccc
Q 040406 79 SIFT-------EEK-----SSLANGSSAEKISFLHDIVSG----SSMIEEKESKT-----NSKRKASKRRKDELEGE 134 (566)
Q Consensus 79 ~~l~-------~e~-----~~l~~~lS~re~evL~~IaqG----sS~~EIae~k~-----IS~~k~~~~~k~~lekl 134 (566)
.... ... ......++.+|.+++..+.++ .+..+|++... ++.++++.+.+....++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~vL~~l~~~~~~~~s~~~Ia~~l~~~~~~~s~~tv~~~i~~lr~KL 195 (223)
T 2hqr_A 119 NVIEIGDLTISPDEEKIIYKGREVEVKGKPFEVLTHLARHRDQIVSKEQLLDAIWEEPEMVTPNVIEVAINQIRQKM 195 (223)
T ss_dssp CSEEETTEEEETTTTEEEETTEEECCCSTTTHHHHHHHHTCSEEEEHHHHHHHHCCSSCSCGGGTHHHHHHHHHHHH
T ss_pred CeEEECCEEEecccCEEEECCEEEecCHHHHHHHHHHHhCCCCcCCHHHHHHHhcCCccCCCCcCHHHHHHHHHHHH
Confidence 1110 000 011234899999999999999 99999999877 77777777766655554
No 48
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.28 E-value=2.8e-12 Score=111.69 Aligned_cols=73 Identities=19% Similarity=0.194 Sum_probs=69.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVT 73 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~ 73 (566)
||+||+|+.||+++|++++++|++..+.+|||++|+..+.....++++.||++||.||++.++|..+|+++++
T Consensus 60 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~ 132 (135)
T 3snk_A 60 PGIVILDLGGGDLLGKPGIVEARALWATVPLIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDT 132 (135)
T ss_dssp CSEEEEEEETTGGGGSTTHHHHHGGGTTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC-
T ss_pred CCEEEEeCCCCCchHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhc
Confidence 7999999999999999999999999889999999999999999999999999999999999999999988764
No 49
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.28 E-value=1.2e-11 Score=104.43 Aligned_cols=73 Identities=30% Similarity=0.531 Sum_probs=68.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
||+||+|+.||+++|++++++++ ..+.+|||++|+..+.....++++.|+++||.||++.++|..+|+++++.
T Consensus 46 ~dlvi~D~~l~~~~g~~~~~~l~-~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (121)
T 1zh2_A 46 PDLIILDLGLPDGDGIEFIRDLR-QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 (121)
T ss_dssp CSEEEEESEETTEEHHHHHHHHH-TTCCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCcHHHHHHHHH-hCCCCcEEEEECCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHHh
Confidence 79999999999999999999999 46789999999999999899999999999999999999999999988764
No 50
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.27 E-value=9.8e-12 Score=111.64 Aligned_cols=72 Identities=25% Similarity=0.383 Sum_probs=69.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAV 72 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL 72 (566)
|||||+|+.||+++|++++++|++..+.+|||++|+..+...+.++++.||++||.||++.++|..+|++++
T Consensus 84 ~dliilD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l 155 (157)
T 3hzh_A 84 IDIVTLXITMPKMDGITCLSNIMEFDKNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVF 155 (157)
T ss_dssp CCEEEECSSCSSSCHHHHHHHHHHHCTTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTT
T ss_pred CCEEEEeccCCCccHHHHHHHHHhhCCCCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHh
Confidence 699999999999999999999999999999999999999999999999999999999999999999998765
No 51
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.27 E-value=1.9e-11 Score=107.40 Aligned_cols=77 Identities=22% Similarity=0.368 Sum_probs=71.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHH--hCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhcC
Q 040406 1 IDLVITDLHMPEMNGLELQKEINE--EFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKKG 77 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~--~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~~ 77 (566)
||+||+|+.||+++|+++++.|++ ..+.+|||++|+..+.....++++.||++||.||++.++|..+|+++++..+.
T Consensus 53 ~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~~ 131 (147)
T 2zay_A 53 PHLIITEANMPKISGMDLFNSLKKNPQTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLYE 131 (147)
T ss_dssp CSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC-
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHcCcccCCCCEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 799999999999999999999998 67899999999999999999999999999999999999999999999876543
No 52
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.27 E-value=1.5e-11 Score=109.07 Aligned_cols=73 Identities=34% Similarity=0.483 Sum_probs=66.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHh----CCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEE----FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVT 73 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~----~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~ 73 (566)
||+||+|+.||+++|++++++||+. .+.+|||++|+..+.+.+.++++.||++||.||++.++|..+|+.+..
T Consensus 59 ~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~ 135 (143)
T 3m6m_D 59 YDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAV 135 (143)
T ss_dssp CSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC-
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhchhccCCCCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHH
Confidence 7999999999999999999999853 457999999999999999999999999999999999999999988753
No 53
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.27 E-value=1.5e-11 Score=106.63 Aligned_cols=74 Identities=28% Similarity=0.425 Sum_probs=69.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHh-CCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEE-FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~-~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
||+||+|+.||+++|++++++|++. .+.+|||++|+..+.....++++.||++||.||++.++|..+|++++..
T Consensus 53 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (136)
T 3hdv_A 53 IGLMITDLRMQPESGLDLIRTIRASERAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKI 127 (136)
T ss_dssp EEEEEECSCCSSSCHHHHHHHHHTSTTTTCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC-
T ss_pred CcEEEEeccCCCCCHHHHHHHHHhcCCCCCCEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcC
Confidence 6999999999999999999999987 6899999999999999999999999999999999999999999988743
No 54
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.27 E-value=1.5e-11 Score=106.48 Aligned_cols=74 Identities=24% Similarity=0.498 Sum_probs=69.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
||+||+|+.||+++|+++++.|++..+.+|||++|+..+.....++++.||++||.||++.++|..+|+++++.
T Consensus 48 ~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (136)
T 1mvo_A 48 PDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRR 121 (136)
T ss_dssp CSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHT
T ss_pred CCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 79999999999999999999999988899999999998888888999999999999999999999999988764
No 55
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.27 E-value=8.3e-12 Score=107.49 Aligned_cols=74 Identities=34% Similarity=0.477 Sum_probs=63.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCC-ChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPV-NPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~-~~eeL~~aI~~vL~~ 74 (566)
||+||+|+.||+++|++++++|++..+.+|||++|+..+.....++++.||++||.||+ +.++|..+|++++..
T Consensus 52 ~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~ 126 (130)
T 3eod_A 52 PDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 (130)
T ss_dssp CSEEEECCC-----CHHHHHHHHHTTCCCCEEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC-
T ss_pred CCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhch
Confidence 79999999999999999999999999999999999999999999999999999999999 899999999988753
No 56
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.26 E-value=1.2e-11 Score=122.12 Aligned_cols=76 Identities=25% Similarity=0.488 Sum_probs=70.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCC--CCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhc
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFI--HLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKK 76 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p--~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~ 76 (566)
||+||+|+.||++||++++++||+..+ .+|||++|+..+.....+|++.||++||.||++.++|..+|+++++..+
T Consensus 170 ~dlvllD~~mP~~dG~~l~~~lr~~~~~~~~~ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~ 247 (259)
T 3luf_A 170 IRLVLVDYYMPEIDGISLVRMLRERYSKQQLAIIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLEALE 247 (259)
T ss_dssp EEEEEECSCCSSSCHHHHHHHHHHHCCTTTSEEEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhccCCCCCeEEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHHhHh
Confidence 589999999999999999999998764 6899999999999999999999999999999999999999999987654
No 57
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.26 E-value=1.6e-11 Score=107.06 Aligned_cols=76 Identities=24% Similarity=0.376 Sum_probs=71.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhC--CCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhc
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEF--IHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKK 76 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~--p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~ 76 (566)
||+||+|+.||+++|+++++.|++.. +.+|||++|+..+.....++++.|+++||.||++.++|..+|+++++.+.
T Consensus 63 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 140 (149)
T 1k66_A 63 PAVILLDLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYWL 140 (149)
T ss_dssp CSEEEECSCCSSSCHHHHHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 69999999999999999999999875 78999999999999999999999999999999999999999999987654
No 58
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.26 E-value=8.6e-12 Score=106.98 Aligned_cols=73 Identities=22% Similarity=0.418 Sum_probs=68.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHh--CCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVT 73 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~--~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~ 73 (566)
||+||+|+.||+++|++++++|++. .+.+|||++|+..+.....++++.|+++||.||++.++|..+|+++++
T Consensus 52 ~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (129)
T 1p6q_A 52 HHLVISDFNMPKMDGLGLLQAVRANPATKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFG 126 (129)
T ss_dssp CSEEEECSSSCSSCHHHHHHHHTTCTTSTTCEEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 6999999999999999999999875 578999999999999999999999999999999999999999998875
No 59
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.26 E-value=2.8e-11 Score=105.12 Aligned_cols=76 Identities=26% Similarity=0.340 Sum_probs=71.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHH--hCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhc
Q 040406 1 IDLVITDLHMPEMNGLELQKEINE--EFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKK 76 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~--~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~ 76 (566)
||+||+|+.||+++|+++++.|++ ..+.+|||++|+..+.....++++.||++||.||++.++|..+|+++++...
T Consensus 55 ~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 132 (143)
T 3cnb_A 55 PDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKK 132 (143)
T ss_dssp CSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTTC
T ss_pred CCEEEEecccCCCcHHHHHHHHHhCccccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Confidence 799999999999999999999998 6789999999999999999999999999999999999999999999987544
No 60
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.26 E-value=2.1e-11 Score=108.31 Aligned_cols=75 Identities=13% Similarity=0.313 Sum_probs=71.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcC-CcEEEeCCCChHHHHHHHHHHHHhh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASG-AVFYMVKPVNPDALRNVWQYAVTSK 75 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aG-A~dYL~KP~~~eeL~~aI~~vL~~~ 75 (566)
||+||+|+.||+++|+++++.|++..+.+|||++|+..+.....++++.| +++||.||++.++|..+|+.+++.+
T Consensus 49 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~~ 124 (151)
T 3kcn_A 49 FSVIMVDMRMPGMEGTEVIQKARLISPNSVYLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQY 124 (151)
T ss_dssp CSEEEEESCCSSSCHHHHHHHHHHHCSSCEEEEEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999 9999999999999999999998654
No 61
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.26 E-value=2.5e-11 Score=105.76 Aligned_cols=74 Identities=26% Similarity=0.363 Sum_probs=69.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHH----hCCCCcEEEEecCCChHHHHHHHhcC-CcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINE----EFIHLPVMVMSSDDRESVIMKSLASG-AVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~----~~p~IPVIvLSa~~d~~~~~~Al~aG-A~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
|||||+|+.||+++|+++++.|++ ..+.+|||++|+..+.....+++..| |++||.||++.++|..+|+++...
T Consensus 61 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~ 139 (146)
T 3ilh_A 61 PSIICIDINMPGINGWELIDLFKQHFQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNE 139 (146)
T ss_dssp CSEEEEESSCSSSCHHHHHHHHHHHCGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHhhhhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHh
Confidence 799999999999999999999998 67899999999999999999999999 999999999999999999988643
No 62
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.25 E-value=1.5e-11 Score=107.81 Aligned_cols=75 Identities=23% Similarity=0.386 Sum_probs=69.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhc
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKK 76 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~ 76 (566)
||+||+|+.||+++|+++++.|++.. .+|||++|+..+...+.++++.||++||.||++.++|..+|+++++...
T Consensus 49 ~dlvllD~~l~~~~g~~l~~~l~~~~-~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~~ 123 (136)
T 2qzj_A 49 YDLIFLEIILSDGDGWTLCKKIRNVT-TCPIVYMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRRMN 123 (136)
T ss_dssp CSEEEEESEETTEEHHHHHHHHHTTC-CCCEEEEESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHccCC-CCCEEEEEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHhh
Confidence 79999999999999999999999865 8999999999999999999999999999999999999999998876543
No 63
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.25 E-value=2.3e-11 Score=106.40 Aligned_cols=74 Identities=19% Similarity=0.408 Sum_probs=68.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhc-CCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLAS-GAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~a-GA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
||+||+|+.||+++|+++++.|++..+.+|||++|+..+.....+++.. ||++||.||++.++|..+|+++++.
T Consensus 45 ~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 119 (139)
T 2jk1_A 45 VQVIICDQRMPGRTGVDFLTEVRERWPETVRIIITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARM 119 (139)
T ss_dssp EEEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEEESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEEeCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHHH
Confidence 6999999999999999999999998889999999999888888888876 5999999999999999999988754
No 64
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.25 E-value=1.6e-11 Score=105.90 Aligned_cols=75 Identities=25% Similarity=0.375 Sum_probs=65.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHh--CCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhc
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKK 76 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~--~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~ 76 (566)
||+||+|+.||+++|++++++|++. .+.+|||++|+..+... .++++.|+++||.||++.++|..+|+++++...
T Consensus 48 ~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 124 (133)
T 3nhm_A 48 PDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLARAE 124 (133)
T ss_dssp CSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHhhhc
Confidence 7999999999999999999999986 56899999999988777 789999999999999999999999999987654
No 65
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.25 E-value=1e-11 Score=105.51 Aligned_cols=73 Identities=23% Similarity=0.441 Sum_probs=62.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHh--CCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVT 73 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~--~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~ 73 (566)
||+||+|+.||+++|+++++.|++. .+.+|||++|+..+.....++++.||++||.||++.++|..+|+++++
T Consensus 46 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1mb3_A 46 PDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLE 120 (124)
T ss_dssp CSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEEEEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEEEEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 7999999999999999999999985 468999999999888888899999999999999999999999998763
No 66
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.24 E-value=9.6e-12 Score=108.43 Aligned_cols=77 Identities=19% Similarity=0.355 Sum_probs=70.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHH--hCCCCcEEEEecCCChHHHH-HHHhcCCcEEEeCCCChHHHHHHHHHHHHhhcC
Q 040406 1 IDLVITDLHMPEMNGLELQKEINE--EFIHLPVMVMSSDDRESVIM-KSLASGAVFYMVKPVNPDALRNVWQYAVTSKKG 77 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~--~~p~IPVIvLSa~~d~~~~~-~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~~ 77 (566)
||+||+|+.||+++|++++++|++ ..+.+|||++|+..+..... ++++.||++||.||++.++|..+|+++++....
T Consensus 51 ~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~~~ 130 (140)
T 3grc_A 51 YAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMAE 130 (140)
T ss_dssp CSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC-
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhcCC
Confidence 799999999999999999999998 67899999999998877776 889999999999999999999999999876543
No 67
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.23 E-value=6.7e-12 Score=107.11 Aligned_cols=74 Identities=22% Similarity=0.388 Sum_probs=69.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhC--CCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEF--IHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~--p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
||+||+|+.||+++|++++++|++.. +.+|||++|+..+.....++++.||++||.||++.++|..+|+++++.
T Consensus 47 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 122 (127)
T 2jba_A 47 PDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRR 122 (127)
T ss_dssp CSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEEEEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHC
T ss_pred CCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhc
Confidence 79999999999999999999999764 789999999999888889999999999999999999999999988754
No 68
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.23 E-value=1.7e-11 Score=114.77 Aligned_cols=74 Identities=30% Similarity=0.509 Sum_probs=68.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSK 75 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~ 75 (566)
||+||+|+.||+++|+++++.|+...+ .|||++|+..+.....++++.||++||.||++.++|..+|+.+++..
T Consensus 59 ~dlvi~D~~~p~~~g~~~~~~l~~~~~-~pii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 132 (205)
T 1s8n_A 59 PDLVIMDVKMPRRDGIDAASEIASKRI-APIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRF 132 (205)
T ss_dssp CSEEEEESSCSSSCHHHHHHHHHHTTC-SCEEEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCChHHHHHHHHhcCC-CCEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 799999999999999999999998765 59999999999999999999999999999999999999999887653
No 69
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.23 E-value=1.9e-11 Score=127.89 Aligned_cols=76 Identities=18% Similarity=0.234 Sum_probs=68.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCCh-----HHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRE-----SVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSK 75 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~-----~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~ 75 (566)
|||||+|+.||+|||++++++|++..+.++||++|+.++. ..+.+|++.||++||.||++.++|..+|++++...
T Consensus 50 ~DlvllDi~mP~~dG~ell~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~~ 129 (400)
T 3sy8_A 50 VDIAICDLQMSGMDGLAFLRHASLSGKVHSVILSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNARR 129 (400)
T ss_dssp EEEEEECSSCSSSCHHHHHHHHHHHTCEEEEEESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHHhh
Confidence 6999999999999999999999998888888888888776 66778899999999999999999999999988654
Q ss_pred c
Q 040406 76 K 76 (566)
Q Consensus 76 ~ 76 (566)
.
T Consensus 130 ~ 130 (400)
T 3sy8_A 130 Q 130 (400)
T ss_dssp T
T ss_pred h
Confidence 3
No 70
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.22 E-value=2.4e-11 Score=115.36 Aligned_cols=74 Identities=26% Similarity=0.452 Sum_probs=65.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHh----CCCCcEEEEecCC-ChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEE----FIHLPVMVMSSDD-RESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSK 75 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~----~p~IPVIvLSa~~-d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~ 75 (566)
|||||+|+.||+++|++++++||+. .+.+|||++|+.. +.+.+.++++.||++||.||++ +|..+|+++++.+
T Consensus 120 ~dlillD~~lp~~~G~el~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~~~ 197 (206)
T 3mm4_A 120 FDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN--QLANVIREIESKR 197 (206)
T ss_dssp CSEEEEESCCSSSCHHHHHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT--THHHHHHHHC---
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHHhhh
Confidence 7999999999999999999999985 5789999999998 7788889999999999999998 8999998887654
Q ss_pred c
Q 040406 76 K 76 (566)
Q Consensus 76 ~ 76 (566)
+
T Consensus 198 ~ 198 (206)
T 3mm4_A 198 H 198 (206)
T ss_dssp -
T ss_pred H
Confidence 3
No 71
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.22 E-value=5.1e-11 Score=106.04 Aligned_cols=75 Identities=25% Similarity=0.437 Sum_probs=71.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSK 75 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~ 75 (566)
||+||+|+.||+++|+++++.|++..+.+|||++|+..+.....++++.|+++||.||++.++|..+|+++++.+
T Consensus 48 ~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~ 122 (155)
T 1qkk_A 48 AGIVISDIRMPGMDGLALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKR 122 (155)
T ss_dssp CSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999999999999999999988654
No 72
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.22 E-value=3.6e-11 Score=106.78 Aligned_cols=74 Identities=20% Similarity=0.362 Sum_probs=70.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
||+||+|+.||+++|++++++|++..+.+|||++|+..+.....++++.||++||.||++.++|..+|+++++.
T Consensus 52 ~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~ 125 (153)
T 3cz5_A 52 PDIVVMDLTLPGPGGIEATRHIRQWDGAARILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAG 125 (153)
T ss_dssp CSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTT
T ss_pred CCEEEEecCCCCCCHHHHHHHHHHhCCCCeEEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999988743
No 73
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.22 E-value=5.6e-11 Score=103.03 Aligned_cols=75 Identities=21% Similarity=0.424 Sum_probs=70.5
Q ss_pred CcEEEEeCCCC-CCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhc
Q 040406 1 IDLVITDLHMP-EMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKK 76 (566)
Q Consensus 1 pDLVLlDi~MP-dmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~ 76 (566)
||+||+|+.|| +++|+++++.|++. +.+|||++|+..+.....++++.|+++||.||++.++|..+|+++++...
T Consensus 55 ~dlii~d~~~~~~~~g~~~~~~l~~~-~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~ 130 (140)
T 3cg0_A 55 PDIALVDIMLCGALDGVETAARLAAG-CNLPIIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKKK 130 (140)
T ss_dssp CSEEEEESSCCSSSCHHHHHHHHHHH-SCCCEEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCCCCCHHHHHHHHHhC-CCCCEEEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhccc
Confidence 79999999998 79999999999988 89999999999999999999999999999999999999999999986543
No 74
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.22 E-value=1.3e-11 Score=108.23 Aligned_cols=75 Identities=23% Similarity=0.368 Sum_probs=69.4
Q ss_pred CcEEEEeCCCCC-CCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhc
Q 040406 1 IDLVITDLHMPE-MNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKK 76 (566)
Q Consensus 1 pDLVLlDi~MPd-mDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~ 76 (566)
|||||+|+.||+ ++|+++++.|++. +.+|||++|+..+...+.++++.||++||.||++.++|..+|+++++.++
T Consensus 51 ~dlvi~D~~l~~~~~g~~~~~~l~~~-~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 126 (140)
T 3h5i_A 51 PDLILMDIELGEGMDGVQTALAIQQI-SELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLYE 126 (140)
T ss_dssp CSEEEEESSCSSSCCHHHHHHHHHHH-CCCCEEEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeccCCCCCCHHHHHHHHHhC-CCCCEEEEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 799999999995 9999999999986 79999999999988888899999999999999999999999999987643
No 75
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.22 E-value=1.3e-11 Score=128.97 Aligned_cols=76 Identities=18% Similarity=0.307 Sum_probs=72.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhc
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKK 76 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~ 76 (566)
|||||+|+.||++||++++++|++..+.+|||++|++.+.+.+.+|++.||++||.||++.++|..+|++++....
T Consensus 45 ~DlvllDi~mP~~dG~ell~~lr~~~~~~pvI~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~ 120 (368)
T 3dzd_A 45 FPVIVLDVWMPDGDGVNFIDFIKENSPDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEYS 120 (368)
T ss_dssp CSEEEEESEETTEETTTHHHHHHHHCTTCEEEEEECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHhh
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999987654
No 76
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.21 E-value=8.2e-12 Score=109.13 Aligned_cols=75 Identities=25% Similarity=0.390 Sum_probs=60.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhC--CCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEF--IHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSK 75 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~--p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~ 75 (566)
||+||+|+.||+++|+++++.|++.. +.+|||++|+..+.+.+.++++.||++||.||++.++|..+|+++++..
T Consensus 47 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 123 (140)
T 3n53_A 47 PDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQ 123 (140)
T ss_dssp CSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhhH
Confidence 79999999999999999999999876 8999999999998888889999999999999999999999999998654
No 77
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.21 E-value=6e-11 Score=105.47 Aligned_cols=75 Identities=20% Similarity=0.407 Sum_probs=70.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcC-CcEEEeCCCChHHHHHHHHHHHHhh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASG-AVFYMVKPVNPDALRNVWQYAVTSK 75 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aG-A~dYL~KP~~~eeL~~aI~~vL~~~ 75 (566)
||+||+|+.||+++|+++++.|++..+.+|||++|+..+.....++++.| |++||.||++.++|..+|+++++..
T Consensus 52 ~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~~ 127 (154)
T 2rjn_A 52 VQLVISDMRMPEMGGEVFLEQVAKSYPDIERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQLA 127 (154)
T ss_dssp CSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999988999999998 9999999999999999999987654
No 78
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.20 E-value=1.6e-11 Score=105.26 Aligned_cols=73 Identities=23% Similarity=0.316 Sum_probs=65.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHh--CCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~--~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
||+||+|+.||+++|++++++|++. .+.+|||++|+..+... .+++..||++||.||++.++|.++++++...
T Consensus 48 ~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 122 (127)
T 3i42_A 48 YDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEGH 122 (127)
T ss_dssp CSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC--
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhcc
Confidence 7999999999999999999999997 78999999999988877 7889999999999999999999999987643
No 79
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.20 E-value=3.6e-11 Score=105.03 Aligned_cols=75 Identities=33% Similarity=0.462 Sum_probs=69.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhc
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKK 76 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~ 76 (566)
||+||+|+ ||+++|+++++.|++..+.+|||++|+..+.....++++.|+++||.||++.++|..+|+++++..+
T Consensus 49 ~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 123 (142)
T 2qxy_A 49 IDLVFVDV-FEGEESLNLIRRIREEFPDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTP 123 (142)
T ss_dssp CSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC--
T ss_pred CCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhcc
Confidence 79999999 9999999999999999999999999999999999999999999999999999999999999986543
No 80
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.20 E-value=2.7e-11 Score=104.16 Aligned_cols=73 Identities=23% Similarity=0.391 Sum_probs=67.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCCh-----HHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRE-----SVIMKSLASGAVFYMVKPVNPDALRNVWQYAVT 73 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~-----~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~ 73 (566)
||+||+|+.||+++|++++++|++..+.+|||++|+..+. ..+.++++.||++||.||++.++|..+|++++.
T Consensus 47 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~ 124 (135)
T 3eqz_A 47 QDIIILDLMMPDMDGIEVIRHLAEHKSPASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSN 124 (135)
T ss_dssp TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHh
Confidence 7999999999999999999999999999999999998875 667778999999999999999999999998764
No 81
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.20 E-value=4.3e-11 Score=103.80 Aligned_cols=74 Identities=22% Similarity=0.388 Sum_probs=69.4
Q ss_pred CcEEEEeCCCC-----CCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMP-----EMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MP-----dmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
||+||+|+.|| +++|+++++.|++..+.+|||++|+..+.....++++.||++||.||++.++|..+|+++++.
T Consensus 48 ~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 126 (140)
T 2qr3_A 48 PEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQ 126 (140)
T ss_dssp EEEEEEETTTTC-----CCHHHHHHHHHHHCTTCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHh
Confidence 69999999999 999999999999999999999999999999999999999999999999999999999998754
No 82
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.19 E-value=9.7e-13 Score=118.28 Aligned_cols=67 Identities=13% Similarity=0.223 Sum_probs=59.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAV 72 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL 72 (566)
||+||+|+.||+|||++++++||+ .++|||++|++.+... +.++|+.+||.|||+.++|..+|++++
T Consensus 54 ~DlvllDi~mP~~~G~el~~~lr~--~~ipvI~lTa~~~~~~---~~~~g~~~yl~KP~~~~~L~~~l~~~~ 120 (123)
T 2lpm_A 54 FDIAIIDVNLDGEPSYPVADILAE--RNVPFIFATGYGSKGL---DTRYSNIPLLTKPFLDSELEAVLVQIS 120 (123)
T ss_dssp SSEEEECSSSSSCCSHHHHHHHHH--TCCSSCCBCTTCTTSC---CSSSCSCSCBCSSSSHHHHHHHHSTTC
T ss_pred CCEEEEecCCCCCCHHHHHHHHHc--CCCCEEEEecCccHHH---HHhCCCCcEEECCCCHHHHHHHHHHHH
Confidence 799999999999999999999997 4799999999887654 346799999999999999999887653
No 83
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.18 E-value=4.6e-11 Score=117.25 Aligned_cols=75 Identities=27% Similarity=0.454 Sum_probs=70.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSK 75 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~ 75 (566)
||+||+|+.||++||++++++||+..+.+|||++|+..+.....++++.|+++||.||++.++|..+|+++++..
T Consensus 174 ~dlvl~D~~mp~~~G~~l~~~ir~~~~~~piI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~ 248 (254)
T 2ayx_A 174 IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAERV 248 (254)
T ss_dssp CSEEEEEESSCSSCCHHHHHHHHHHHCCSCEEEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHHHh
Confidence 799999999999999999999999888999999999999999999999999999999999999999999887643
No 84
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.18 E-value=2.2e-11 Score=113.20 Aligned_cols=74 Identities=9% Similarity=0.118 Sum_probs=68.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSK 75 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~ 75 (566)
||+||+|+.||+++|+ +++.++...+.+|||++|+..+.+.+.++++.||++||.||++.++|..+|+.++...
T Consensus 53 ~dlvl~D~~mp~~~g~-l~~~~~~~~~~~~ii~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 126 (196)
T 1qo0_D 53 VDVVFTSIFQNRHHDE-IAALLAAGTPRTTLVALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRIS 126 (196)
T ss_dssp CSEEEEECCSSTHHHH-HHHHHHHSCTTCEEEEEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCccchH-HHHHHhccCCCCCEEEEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHHHH
Confidence 7999999999999998 8888877657999999999999999999999999999999999999999999887643
No 85
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.17 E-value=9.7e-12 Score=125.45 Aligned_cols=73 Identities=18% Similarity=0.385 Sum_probs=66.8
Q ss_pred CcEEEEeCCCC-CCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhc
Q 040406 1 IDLVITDLHMP-EMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKK 76 (566)
Q Consensus 1 pDLVLlDi~MP-dmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~ 76 (566)
|||||+|+.|| +|||+++++.||+.. ++|||++|+..+ ...+|++.||++||.||++.++|..+|+.++....
T Consensus 206 ~dlvl~D~~MPd~mdG~e~~~~ir~~~-~~piI~lT~~~~--~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~~~ 279 (286)
T 3n0r_A 206 PGLVLADIQLADGSSGIDAVKDILGRM-DVPVIFITAFPE--RLLTGERPEPTFLITKPFQPETVKAAIGQALFFHP 279 (286)
T ss_dssp CSEEEEESCCTTSCCTTTTTHHHHHHT-TCCEEEEESCGG--GGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHHSC
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHhcC-CCCEEEEeCCHH--HHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHhCC
Confidence 79999999999 799999999999988 999999999854 45678999999999999999999999999987654
No 86
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.17 E-value=2e-11 Score=106.40 Aligned_cols=76 Identities=18% Similarity=0.312 Sum_probs=70.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHH--hCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhc
Q 040406 1 IDLVITDLHMPEMNGLELQKEINE--EFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKK 76 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~--~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~ 76 (566)
||+||+|+.||+++|+++++.|++ ..+.+|||++|+..+.....++++.||++||.||++.++|..+|+++++..+
T Consensus 52 ~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~ 129 (142)
T 3cg4_A 52 SGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGFVR 129 (142)
T ss_dssp CEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHHHh
Confidence 699999999999999999999998 6789999999999888888889999999999999999999999999987654
No 87
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.17 E-value=4.1e-11 Score=100.88 Aligned_cols=70 Identities=27% Similarity=0.367 Sum_probs=64.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAV 72 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL 72 (566)
||+||+|+.||+++|+++++.+++..+.+|||++|+..+.. .++++.|+++||.||++.++|..++++++
T Consensus 46 ~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 46 YDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAYSHYR--SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp CSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCGGGG--GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECCcchH--HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 79999999999999999999999988899999999987655 67889999999999999999999998764
No 88
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.15 E-value=8e-11 Score=123.65 Aligned_cols=75 Identities=24% Similarity=0.411 Sum_probs=71.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSK 75 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~ 75 (566)
||+||+|+.||++||++++++|++..+++|||++|+..+.+.+.++++.||++||.||++.++|..+|+++++.+
T Consensus 45 ~DlvllD~~mp~~dG~ell~~lr~~~~~~pvIvlT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~ 119 (387)
T 1ny5_A 45 FNVVLLDLLLPDVNGLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHR 119 (387)
T ss_dssp CSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEEEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999999999999999999887643
No 89
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.15 E-value=8.7e-11 Score=102.77 Aligned_cols=74 Identities=22% Similarity=0.329 Sum_probs=64.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHh--CCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~--~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
||+||+|+.||+++|+++++.|++. .+.+|||++|+..+......++..|+++||.||++.++|..+|+.+++.
T Consensus 48 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~ 123 (138)
T 3c3m_A 48 PDLVLLDIMMEPMDGWETLERIKTDPATRDIPVLMLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLAR 123 (138)
T ss_dssp CSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEEEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHH
Confidence 7999999999999999999999975 3589999999987766666666778899999999999999999988743
No 90
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.15 E-value=4.2e-11 Score=124.22 Aligned_cols=75 Identities=33% Similarity=0.527 Sum_probs=67.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCC-ChHHHHHHHHHHHHhh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPV-NPDALRNVWQYAVTSK 75 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~-~~eeL~~aI~~vL~~~ 75 (566)
|||||+|+.||++||++++++||+..+++|||++|+..+.+.+.+|++.||++||.||+ +.++|..+|+++++..
T Consensus 50 ~dlvllD~~mp~~~G~~~~~~lr~~~~~~pii~lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~~~~ 125 (394)
T 3eq2_A 50 PDLVICDLRMPQIDGLELIRRIRQTASETPIIVLSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALDRA 125 (394)
T ss_dssp CSEEEECCCSSSSCTHHHHHHHHHTTCCCCEEEC---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhhCCCCcEEEEEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHHhhh
Confidence 79999999999999999999999998999999999999999999999999999999999 6899999998887643
No 91
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.14 E-value=4.2e-11 Score=106.20 Aligned_cols=75 Identities=17% Similarity=0.325 Sum_probs=60.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSK 75 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~ 75 (566)
||+||+|+.||+++|+++++.|++..+.+|||++|+..+.....++++.|+++||.||++.++|..+|+++++..
T Consensus 51 ~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~ 125 (154)
T 2qsj_A 51 VDLILLDVNLPDAEAIDGLVRLKRFDPSNAVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGE 125 (154)
T ss_dssp CSEEEECC------CHHHHHHHHHHCTTSEEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCC
Confidence 799999999999999999999999999999999999998899999999999999999999999999999987543
No 92
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.13 E-value=1.2e-10 Score=101.08 Aligned_cols=72 Identities=24% Similarity=0.389 Sum_probs=64.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCC----C-CcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 040406 2 DLVITDLHMPEMNGLELQKEINEEFI----H-LPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVT 73 (566)
Q Consensus 2 DLVLlDi~MPdmDG~eLLe~Lr~~~p----~-IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~ 73 (566)
|+||+|+.||+++|+++++.|++..+ . ++||++|+..+.....++++.||++||.||++.++|..+|+++++
T Consensus 52 dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~ 128 (136)
T 1dcf_A 52 KVVFMDVCMPGVENYQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLE 128 (136)
T ss_dssp SEEEEECCSSTTTTTHHHHHHHHHHC-CCSCCCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHS
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHhhhhccCCCceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhc
Confidence 89999999999999999999985422 2 458889999999889999999999999999999999999998874
No 93
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.13 E-value=1.5e-10 Score=100.96 Aligned_cols=72 Identities=18% Similarity=0.319 Sum_probs=67.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhC--CCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEF--IHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAV 72 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~--p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL 72 (566)
||+||+|+.||+++|+++++.|++.. +.+|||++|+..+.....++++.|+++||.||++.++|..++....
T Consensus 60 ~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~ 133 (143)
T 2qvg_A 60 PKLILLDINIPKMNGIEFLKELRDDSSFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQ 133 (143)
T ss_dssp CSEEEEETTCTTSCHHHHHHHHTTSGGGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred CCEEEEecCCCCCCHHHHHHHHHcCccccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHH
Confidence 69999999999999999999999865 7899999999999999999999999999999999999999977654
No 94
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.13 E-value=1.4e-10 Score=122.02 Aligned_cols=74 Identities=23% Similarity=0.438 Sum_probs=69.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHh--CCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~--~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
|||||+|+.||++||+++++.|++. .+.+|||++|+..+...+.++++.||++||.||++.++|..+|+.+++.
T Consensus 46 ~dlvllD~~mp~~~G~~~~~~l~~~~~~~~~pii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~~ 121 (459)
T 1w25_A 46 PDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRF 121 (459)
T ss_dssp CSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCcccCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 7999999999999999999999984 4689999999999999999999999999999999999999999988654
No 95
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.13 E-value=1.3e-10 Score=101.56 Aligned_cols=74 Identities=18% Similarity=0.314 Sum_probs=66.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhc
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKK 76 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~ 76 (566)
|||||+|+.||+++|+++++.|++..+.+|||++|+..+ ...++++.||++||.||++.++|..+|+++++.++
T Consensus 56 ~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~--~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (143)
T 2qv0_A 56 VDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFITAWKE--HAVEAFELEAFDYILKPYQESRIINMLQKLTTAWE 129 (143)
T ss_dssp CSEEEECSSCSSSCHHHHHHHHTTSTTCCEEEEEESCCT--THHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCCCCHHHHHHHHHccCCCceEEEEeCCHH--HHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHHHH
Confidence 799999999999999999999998877888999998743 56789999999999999999999999999887654
No 96
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.12 E-value=1.4e-10 Score=117.73 Aligned_cols=73 Identities=26% Similarity=0.415 Sum_probs=68.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHh--CCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVT 73 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~--~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~ 73 (566)
|||||+|+.||++||+++++.|++. .+.+|||++|+..+...+.++++.||++||.||++.++|..+|+.+++
T Consensus 64 ~dlvl~D~~mp~~~G~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~~~ 138 (358)
T 3bre_A 64 PTVILQDLVMPGVDGLTLLAAYRGNPATRDIPIIVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHSR 138 (358)
T ss_dssp CSEEEEESBCSSSBHHHHHHHHTTSTTTTTSCEEEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCcccCCCcEEEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHHHH
Confidence 7999999999999999999999875 568999999999999999999999999999999999999999987754
No 97
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.11 E-value=2.1e-10 Score=98.59 Aligned_cols=73 Identities=25% Similarity=0.428 Sum_probs=62.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhC--CCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEF--IHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~--p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
||+||+|+.||+++|++++++|++.. +.++||+++..... ...++++.||++||.||++.++|..+|+++...
T Consensus 51 ~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~~~~~~~-~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (132)
T 3lte_A 51 PAIMTLDLSMPKLDGLDVIRSLRQNKVANQPKILVVSGLDKA-KLQQAVTEGADDYLEKPFDNDALLDRIHDLVNE 125 (132)
T ss_dssp CSEEEEESCBTTBCHHHHHHHHHTTTCSSCCEEEEECCSCSH-HHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC-
T ss_pred CCEEEEecCCCCCCHHHHHHHHHhcCccCCCeEEEEeCCChH-HHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCC
Confidence 79999999999999999999999876 35666666665555 778999999999999999999999999988643
No 98
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.11 E-value=1.5e-10 Score=97.88 Aligned_cols=72 Identities=19% Similarity=0.340 Sum_probs=67.1
Q ss_pred CcEEEEeCCCC-CCCHHHHHHHHHHh--CCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 040406 1 IDLVITDLHMP-EMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVT 73 (566)
Q Consensus 1 pDLVLlDi~MP-dmDG~eLLe~Lr~~--~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~ 73 (566)
||+||+|+.|| +++|+++++.|++. .+.+|||++ +..+.....++++.|+++||.||++.++|..+|+++++
T Consensus 50 ~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 124 (127)
T 2gkg_A 50 PDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIVII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIG 124 (127)
T ss_dssp CSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEEEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHC
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCEEEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHc
Confidence 79999999999 99999999999987 689999999 88888888899999999999999999999999998764
No 99
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.09 E-value=2.6e-10 Score=103.46 Aligned_cols=72 Identities=29% Similarity=0.437 Sum_probs=62.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChH--HHHHHHhcCCcEEEeCCCC---------hHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRES--VIMKSLASGAVFYMVKPVN---------PDALRNVWQ 69 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~--~~~~Al~aGA~dYL~KP~~---------~eeL~~aI~ 69 (566)
|||||+|+.||+++|+++++.|++..+ +|||++|+..+.. .+.++++.||++||.||++ .++|..+|+
T Consensus 72 ~dlvilD~~l~~~~g~~l~~~lr~~~~-~~ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~ 150 (164)
T 3t8y_A 72 PDVITMDIEMPNLNGIEALKLIMKKAP-TRVIMVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIR 150 (164)
T ss_dssp CSEEEECSSCSSSCHHHHHHHHHHHSC-CEEEEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCC-ceEEEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHH
Confidence 799999999999999999999999887 9999999977643 6779999999999999999 566666666
Q ss_pred HHHH
Q 040406 70 YAVT 73 (566)
Q Consensus 70 ~vL~ 73 (566)
+++.
T Consensus 151 ~~~~ 154 (164)
T 3t8y_A 151 QAMN 154 (164)
T ss_dssp HHTT
T ss_pred HHhC
Confidence 6653
No 100
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.07 E-value=6.5e-12 Score=106.24 Aligned_cols=75 Identities=28% Similarity=0.504 Sum_probs=69.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSK 75 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~ 75 (566)
||+||+|+.||+++|+++++.+++..+.+|||++|+..+.....++++.||++|+.||++.++|..+|+++++.+
T Consensus 48 ~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 122 (124)
T 1dc7_A 48 PDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (124)
T ss_dssp CSCEEECSCSSHHHHCSTHHHHHHHCTTSCCCCBCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHHT
T ss_pred CCEEEEeeecCCCCHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHHhh
Confidence 699999999999999999999999888999999999988888888999999999999999999999999887643
No 101
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.06 E-value=5.1e-10 Score=95.97 Aligned_cols=74 Identities=16% Similarity=0.263 Sum_probs=66.9
Q ss_pred CcEEEEeCCCCC-CCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhhc
Q 040406 1 IDLVITDLHMPE-MNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSKK 76 (566)
Q Consensus 1 pDLVLlDi~MPd-mDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~~ 76 (566)
||+||+|+.||+ ++|++++++|++..+.+|||++|+..+.....++++.| +||.||++.++|..+|++++....
T Consensus 51 ~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~~~ 125 (132)
T 2rdm_A 51 IDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVYISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNARE 125 (132)
T ss_dssp CCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEEEESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHTTC
T ss_pred CCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEEEeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhcCC
Confidence 799999999998 99999999999998899999999998888777777765 899999999999999999886543
No 102
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.03 E-value=1.8e-10 Score=101.30 Aligned_cols=68 Identities=21% Similarity=0.264 Sum_probs=55.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEec--CCChHHHHHHHhcCCcEEEeCCCChHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSS--DDRESVIMKSLASGAVFYMVKPVNPDALRNVWQ 69 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa--~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~ 69 (566)
|||||+|+.||+++|++++++|++..+ +|||+++. ..+...+.++++.||++||.||++.++|...++
T Consensus 61 ~dlvilD~~l~~~~g~~~~~~lr~~~~-~~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~ 130 (145)
T 3kyj_B 61 VDLILLDIEMPVMDGMEFLRHAKLKTR-AKICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSHDLEEK 130 (145)
T ss_dssp CCEEEECTTSCCCTTCHHHHHHHHHCC-CEEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC------C
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCC-CCeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHHHHHHH
Confidence 799999999999999999999998875 89999998 556677889999999999999999776665543
No 103
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=98.96 E-value=3.9e-10 Score=93.50 Aligned_cols=69 Identities=19% Similarity=0.250 Sum_probs=62.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhC--CCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEF--IHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAV 72 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~--p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL 72 (566)
||+||+|+.||+++|+++++.+++.. +.+|||++|...+.. ++++.|+++||.||++.++|..+|++++
T Consensus 46 ~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~---~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 46 PIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGEPPVD---PLLTAQASAILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp CSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESSCCSS---HHHHHHCSEECSSCSTTHHHHHHHHTTC
T ss_pred CCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCCCCch---hhhhcCHHHhccCCCCHHHHHHHHHHHh
Confidence 69999999999999999999999875 789999999987766 8899999999999999999999887654
No 104
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=98.95 E-value=2.1e-09 Score=93.37 Aligned_cols=69 Identities=25% Similarity=0.325 Sum_probs=63.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHhcCCcEEEeCCC-ChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFI-HLPVMVMSSDDRESVIMKSLASGAVFYMVKPV-NPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p-~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~-~~eeL~~aI~~vL~~ 74 (566)
||+|| ||+++|+++++.|++. + .+|||++|+..+.....++++.||++||.||+ +.++|..+|+++++.
T Consensus 63 ~dlvi----~~~~~g~~~~~~l~~~-~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 133 (137)
T 2pln_A 63 YDLVM----VSDKNALSFVSRIKEK-HSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRF 133 (137)
T ss_dssp CSEEE----ECSTTHHHHHHHHHHH-STTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC-
T ss_pred CCEEE----EcCccHHHHHHHHHhc-CCCccEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhh
Confidence 68888 8999999999999998 8 89999999999999999999999999999999 999999999987643
No 105
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=98.94 E-value=1.1e-09 Score=95.84 Aligned_cols=70 Identities=29% Similarity=0.460 Sum_probs=60.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHh-----CCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEE-----FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVT 73 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~-----~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~ 73 (566)
||+||+|+.||+++|+++++.|++. .+.+|||++|+........ +.||++||.||++.++|..+|++++.
T Consensus 55 ~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~~ii~~s~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~ 129 (140)
T 3c97_A 55 FDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKRASIIAITADTIDDDRP---GAELDEYVSKPLNPNQLRDVVLTCHS 129 (140)
T ss_dssp CSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCCCCCEEEESSCCSCCCC---CSSCSEEEESSCCHHHHHHHHHHHHC
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCCceEEEEEeCccchhHHH---hCChhheEeCCCCHHHHHHHHHHHhC
Confidence 7999999999999999999999874 4789999999876544322 78999999999999999999998874
No 106
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=98.91 E-value=2.2e-09 Score=105.85 Aligned_cols=59 Identities=25% Similarity=0.354 Sum_probs=54.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCCh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~ 61 (566)
||+||+|+.||++||+++++++++. .+|||++|+..+.+...+++++||++||.||...
T Consensus 49 ~dlvllD~~mP~~~G~~~~~~lr~~--~~pvi~lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~ 107 (259)
T 3luf_A 49 YVVALVDLTLPDAPSGEAVKVLLER--GLPVVILTADISEDKREAWLEAGVLDYVMKDSRH 107 (259)
T ss_dssp EEEEEEESCBTTBTTSHHHHHHHHT--TCCEEEEECC-CHHHHHHHHHTTCCEEEECSSHH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhC--CCCEEEEEccCCHHHHHHHHHCCCcEEEeCCchh
Confidence 6899999999999999999999874 6899999999999999999999999999999643
No 107
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=98.86 E-value=7.3e-10 Score=96.41 Aligned_cols=69 Identities=17% Similarity=0.267 Sum_probs=60.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEe-cCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMS-SDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVT 73 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLS-a~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~ 73 (566)
||+||+|+.||+++|+++++.|++..+.+|||++| +..+... .+++ +++||.||++.++|..+|+++++
T Consensus 61 ~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~-~~~~---~~~~l~KP~~~~~L~~~i~~~~~ 130 (138)
T 2b4a_A 61 CDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLILTTGRHELIE-SSEH---NLSYLQKPFAISELRAAIDYHKP 130 (138)
T ss_dssp CSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEEEESCC--CCC-CSSS---CEEEEESSCCHHHHHHHHHHTCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCCCHHH-HHHH---HHheeeCCCCHHHHHHHHHHHHH
Confidence 79999999999999999999999988899999999 8776655 5555 99999999999999999987753
No 108
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=98.82 E-value=7.9e-09 Score=107.45 Aligned_cols=72 Identities=25% Similarity=0.420 Sum_probs=63.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCCh--HHHHHHHhcCCcEEEeCCCCh---------HHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRE--SVIMKSLASGAVFYMVKPVNP---------DALRNVWQ 69 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~--~~~~~Al~aGA~dYL~KP~~~---------eeL~~aI~ 69 (566)
||+||+|+.||++||++++++|++..+ +|||++|+..+. +...++++.||++||.||++. ++|...|+
T Consensus 50 pDlVllDi~mp~~dGlell~~l~~~~p-~pVIvlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~ 128 (349)
T 1a2o_A 50 PDVLTLDVEMPRMDGLDFLEKLMRLRP-MPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVR 128 (349)
T ss_dssp CSEEEEECCCSSSCHHHHHHHHHHSSC-CCEEEEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCC-CcEEEEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHH
Confidence 799999999999999999999999886 999999998775 457899999999999999983 77777777
Q ss_pred HHHH
Q 040406 70 YAVT 73 (566)
Q Consensus 70 ~vL~ 73 (566)
.+.+
T Consensus 129 ~~~~ 132 (349)
T 1a2o_A 129 TAAR 132 (349)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7654
No 109
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=98.71 E-value=2e-08 Score=94.93 Aligned_cols=73 Identities=26% Similarity=0.399 Sum_probs=64.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCC--CChHHHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKP--VNPDALRNVWQYAVT 73 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP--~~~eeL~~aI~~vL~ 73 (566)
|||||+|+.||+++|++++++|++..+..++++++.....+.+.++++.||++|+.|| ++..+|...+.+.+.
T Consensus 26 ~dlvl~D~~~p~~~g~~~~~~l~~~~~~~~i~vi~~~~~~~~~~~~~~~Ga~~~l~kp~~~~~~~l~~~i~~~~~ 100 (237)
T 3cwo_X 26 PDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVNTAAVENPSLITQIAQTFG 100 (237)
T ss_dssp CSCEEEECCSTTSSHHHHHHHHHHHSSSCCEEEECCSSTHHHHHHHHHTTCCEEEESHHHHHCTHHHHHHHHHHT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHCCHHheEeCCcccChHHHHHHHHHHhC
Confidence 7999999999999999999999988777778888877778888999999999999999 777788888777664
No 110
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=98.66 E-value=1.1e-08 Score=116.32 Aligned_cols=75 Identities=15% Similarity=0.152 Sum_probs=68.6
Q ss_pred CcEEEEeCCCCC----CCHHHHHHHHHHhCCCCcEEEEecCCC-hHHHHHHHhcCCcEEEeCCCChHH-HHHHHHHHHHh
Q 040406 1 IDLVITDLHMPE----MNGLELQKEINEEFIHLPVMVMSSDDR-ESVIMKSLASGAVFYMVKPVNPDA-LRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPd----mDG~eLLe~Lr~~~p~IPVIvLSa~~d-~~~~~~Al~aGA~dYL~KP~~~ee-L~~aI~~vL~~ 74 (566)
||+||+|++||+ +||++++++||+..+++|||++|+..+ .+.....+..||+|||.||++..+ |...|+.++++
T Consensus 54 ~d~vilDi~lp~~~~~~~G~~ll~~iR~~~~~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a~~rr 133 (755)
T 2vyc_A 54 IDCLMFSYQMEHPDEHQNVRQLIGKLHERQQNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTR 133 (755)
T ss_dssp CSEEEEECCCCSHHHHHHHHHHHHHHHHHSTTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred CcEEEEeCCCCcccccccHHHHHHHHHHhCCCCCEEEEecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHHHHHH
Confidence 699999999999 999999999999988999999999877 677778899999999999999999 88888888866
Q ss_pred h
Q 040406 75 K 75 (566)
Q Consensus 75 ~ 75 (566)
.
T Consensus 134 ~ 134 (755)
T 2vyc_A 134 Y 134 (755)
T ss_dssp H
T ss_pred h
Confidence 4
No 111
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=98.24 E-value=3.6e-06 Score=88.45 Aligned_cols=75 Identities=25% Similarity=0.460 Sum_probs=67.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHh--CCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhh
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEE--FIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSK 75 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~--~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~ 75 (566)
||+|++|+.||+|+|+++++.+|.. ...+|||++|+..+.....++++.|+.+|+.||+..+++...+..+++.+
T Consensus 195 ~dlil~D~~mp~~dG~~~~~~ir~~~~~~~~pii~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~~~~~ 271 (459)
T 1w25_A 195 VDLVIVNAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRK 271 (459)
T ss_dssp CSEEEEETTCSSSCHHHHHHHHHTSGGGTTCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCCCcHHHHHHHHHhCccccCCcEEEEcCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHH
Confidence 5899999999999999999999863 35799999999999998899999999999999999999988887776543
No 112
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=94.83 E-value=0.066 Score=49.89 Aligned_cols=67 Identities=12% Similarity=0.297 Sum_probs=53.0
Q ss_pred cEEEEeC-CCCCCCHH--HHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEE------eCCCChHHHHHHHH
Q 040406 2 DLVITDL-HMPEMNGL--ELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYM------VKPVNPDALRNVWQ 69 (566)
Q Consensus 2 DLVLlDi-~MPdmDG~--eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL------~KP~~~eeL~~aI~ 69 (566)
++++.++ .++.++|+ +++++++... ++|||++++....+...++++.||++++ .+|++..++++.++
T Consensus 146 ~vli~~~~~~g~~~g~~~~~i~~~~~~~-~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~~~~~~~~~~~l~ 221 (237)
T 3cwo_X 146 EILLTSIDRDGTKSGYDTEMIRFVRPLT-TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRELKEYLK 221 (237)
T ss_dssp EEEEEETTTTTCCSCCCHHHHHHHGGGC-CSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTTSSCHHHHHHHHH
T ss_pred eEEEEecCCCCccccccHHHHHHHHHhc-CCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHcCCCCHHHHHHHHH
Confidence 4777886 66666664 4666666554 8999999999999999999999999985 78888888877653
No 113
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=89.71 E-value=0.79 Score=40.27 Aligned_cols=68 Identities=18% Similarity=0.262 Sum_probs=51.7
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhh
Q 040406 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSK 75 (566)
Q Consensus 2 DLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~ 75 (566)
|+|+|++.+--.+-+. .+..+..-+|++-..-+++.+.+.+..||. ||.+|+.+..|..+|+..++..
T Consensus 52 dlIfCEYlLLPe~ifS-----~k~~~~~dliVLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrqh 119 (121)
T 3q7r_A 52 DLVVCEYSLLPREIRS-----PKSLEGSFVLVLLDFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQH 119 (121)
T ss_dssp EEEEEEGGGSCTTCCC-----CTTCCSCEEEEEESSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHHC
T ss_pred eeEEEeeecChHHhcC-----CCCCCcccEEEEehhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhcc
Confidence 7888887553211100 012345678888888899999999999999 9999999999999999998753
No 114
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=85.15 E-value=0.41 Score=40.07 Aligned_cols=52 Identities=13% Similarity=0.072 Sum_probs=44.0
Q ss_pred hccCCchHHHHHHhhhccCCchhHHHHhhhccccccccccccccccccccch
Q 040406 88 LANGSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENAAAP 139 (566)
Q Consensus 88 l~~~lS~re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~~lekl~~~s~ 139 (566)
....++.++.+++..+.+|.+..+|++...++..+++.+.+....++.+..+
T Consensus 26 ~~~~Lt~rE~~Vl~l~~~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv~~r 77 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSR 77 (90)
T ss_dssp ---CCCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCSSH
T ss_pred cccCCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCH
Confidence 3456999999999999999999999999999999999998888777766554
No 115
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=84.19 E-value=0.47 Score=53.91 Aligned_cols=70 Identities=16% Similarity=0.116 Sum_probs=50.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCC-ChHHHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPV-NPDALRNVWQYAVT 73 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~-~~eeL~~aI~~vL~ 73 (566)
+++||+|+.++ +.+++++||+..+++||++++...+...+......++++|+.+.. +.+.+...|.++.+
T Consensus 52 i~avIld~d~~---~~~ll~~Ir~~~~~iPVFl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (715)
T 3n75_A 52 LCGVIFDWDKY---NLELCEEISKMNENLPLYAFANTYSTLDVSLNDLRLQISFFEYALGAAEDIANKIKQTTD 122 (715)
T ss_dssp EEEEEEEHHHH---HHHHHHHHHHHCTTCEEEEECCTTCCCCGGGTTSCCEEEEECCCTTCHHHHHHHHHHHHH
T ss_pred ceEEEEecccc---HHHHHHHHHHhCCCCCEEEEecCCcccccchhhhhccCeEEEeCCCCHHHHHHHHHHHHH
Confidence 36899999885 689999999999999999999886533221112357889999876 45555555555543
No 116
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=83.29 E-value=2.9 Score=41.29 Aligned_cols=57 Identities=21% Similarity=0.316 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhCCCCcEEEEecCCC------hHHHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 040406 15 GLELQKEINEEFIHLPVMVMSSDDR------ESVIMKSLASGAVFYMVKPVNPDALRNVWQYA 71 (566)
Q Consensus 15 G~eLLe~Lr~~~p~IPVIvLSa~~d------~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~v 71 (566)
.+++++++|+..|++||++|+-... ...+..|.++|+++++.-.+..+++...++.+
T Consensus 81 ~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~ 143 (262)
T 2ekc_A 81 VLELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVPDLPPEEAEELKAVM 143 (262)
T ss_dssp HHHHHHHHHHHCTTSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Confidence 4567888888876899999865432 35567788999999999878888776666544
No 117
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=78.46 E-value=0.94 Score=43.81 Aligned_cols=54 Identities=11% Similarity=0.001 Sum_probs=47.0
Q ss_pred hccCCchHHHHHHhhhccCCchhHHHHhhhccccccccccccccccccccchhh
Q 040406 88 LANGSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENAAAPKK 141 (566)
Q Consensus 88 l~~~lS~re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~~lekl~~~s~KK 141 (566)
....++++|.+++..+.+|.+..||++...++.++++.+.+....++.+..+.+
T Consensus 172 ~~~~Lt~re~~vl~~~~~G~s~~eIa~~l~is~~tV~~~~~~~~~kl~~~~~~~ 225 (237)
T 3szt_A 172 SNVRLTARETEMLKWTAVGKTYGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAE 225 (237)
T ss_dssp GGCCCCHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCHHH
Confidence 345699999999999999999999999999999999999988888877666433
No 118
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=77.78 E-value=2.6 Score=42.23 Aligned_cols=56 Identities=11% Similarity=0.186 Sum_probs=43.5
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCC------hHHHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 040406 16 LELQKEINEEFIHLPVMVMSSDDR------ESVIMKSLASGAVFYMVKPVNPDALRNVWQYA 71 (566)
Q Consensus 16 ~eLLe~Lr~~~p~IPVIvLSa~~d------~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~v 71 (566)
+++++++|+...++||++|+-... ...+.+|.++|+++.|.-.+..++....++.+
T Consensus 83 ~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~ 144 (267)
T 3vnd_A 83 FDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKAA 144 (267)
T ss_dssp HHHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHH
Confidence 678888887767899999986543 56788899999999999878888766555443
No 119
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=77.59 E-value=3.5 Score=41.46 Aligned_cols=57 Identities=11% Similarity=0.101 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHhCCCCcEEEEecCC------ChHHHHHHHhcCCcEEEeCCCChHHHHHHHHH
Q 040406 14 NGLELQKEINEEFIHLPVMVMSSDD------RESVIMKSLASGAVFYMVKPVNPDALRNVWQY 70 (566)
Q Consensus 14 DG~eLLe~Lr~~~p~IPVIvLSa~~------d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~ 70 (566)
+.+++++++|+..+++|||+|+-.. -...+.+|.++|+++.|.-.+..++....++.
T Consensus 83 ~~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~ 145 (271)
T 3nav_A 83 ICFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAA 145 (271)
T ss_dssp HHHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
Confidence 3467888888887799999998543 35668889999999999977877775554443
No 120
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=76.72 E-value=4.6 Score=38.77 Aligned_cols=53 Identities=15% Similarity=0.157 Sum_probs=39.2
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCC------hHHHHHHHhcCCcEEEeCCCChHHHHHHHH
Q 040406 16 LELQKEINEEFIHLPVMVMSSDDR------ESVIMKSLASGAVFYMVKPVNPDALRNVWQ 69 (566)
Q Consensus 16 ~eLLe~Lr~~~p~IPVIvLSa~~d------~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~ 69 (566)
+++++++++.. ++||++++.... .+.+..++++||+..+.-....++....++
T Consensus 69 ~~~i~~i~~~~-~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~ 127 (248)
T 1geq_A 69 FWIVKEFRRHS-STPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTE 127 (248)
T ss_dssp HHHHHHHHTTC-CCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHH
T ss_pred HHHHHHHHhhC-CCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhHHHHHH
Confidence 67888888775 789998885333 567788999999999997666666554443
No 121
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=75.47 E-value=1.2 Score=37.95 Aligned_cols=51 Identities=14% Similarity=0.096 Sum_probs=43.5
Q ss_pred ccCCchHHHHHHhhhccCCchhHHHHhhhccccccccccccccccccccch
Q 040406 89 ANGSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENAAAP 139 (566)
Q Consensus 89 ~~~lS~re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~~lekl~~~s~ 139 (566)
...+++++.+++..+.+|.+..||++...++..+++.+......++.+...
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~s~~EIA~~L~iS~~TV~~~l~ri~~KLgv~~r 82 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVDND 82 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSH
T ss_pred cCCCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCH
Confidence 356899999999999999999999999999999998888777776666553
No 122
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=74.72 E-value=1.5 Score=35.59 Aligned_cols=52 Identities=12% Similarity=-0.007 Sum_probs=42.9
Q ss_pred hhccCCchHHHHHHhhhccCCchhHHHHhhhccccccccccccccccccccc
Q 040406 87 SLANGSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENAAA 138 (566)
Q Consensus 87 ~l~~~lS~re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~~lekl~~~s 138 (566)
.....++.++.+++..+..|.+..||++...++..+++.+.+....++....
T Consensus 17 ~~~~~Lt~~e~~vl~l~~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 68 (82)
T 1je8_A 17 RDVNQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKS 68 (82)
T ss_dssp CCGGGSCHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSS
T ss_pred HHHccCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 3445689999999998999999999999999999999888777666655444
No 123
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=74.38 E-value=4.4 Score=40.01 Aligned_cols=57 Identities=16% Similarity=0.156 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhCCCCcEEEEecCCC------hHHHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 040406 15 GLELQKEINEEFIHLPVMVMSSDDR------ESVIMKSLASGAVFYMVKPVNPDALRNVWQYA 71 (566)
Q Consensus 15 G~eLLe~Lr~~~p~IPVIvLSa~~d------~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~v 71 (566)
+++++++||+...++||++|+-... ...+..+.++|+++++.-.+..+++...++.+
T Consensus 81 ~~~~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGadgii~~d~~~e~~~~~~~~~ 143 (268)
T 1qop_A 81 CFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAA 143 (268)
T ss_dssp HHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEEcccHHHHhhHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHH
Confidence 3467888888756899998863322 46677889999999999888877766666544
No 124
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=71.95 E-value=1.6 Score=41.82 Aligned_cols=53 Identities=9% Similarity=-0.037 Sum_probs=45.9
Q ss_pred ccCCchHHHHHHhhhccCCchhHHHHhhhccccccccccccccccccccchhh
Q 040406 89 ANGSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENAAAPKK 141 (566)
Q Consensus 89 ~~~lS~re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~~lekl~~~s~KK 141 (566)
...++++|.+++..+.+|.+..||++...++..+++.+.+....++.+..+.+
T Consensus 173 ~~~Lt~~e~~vl~~~~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~~~~~~ 225 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASKGKTASVTANLTGINARTVQHYLDKARAKLDAESVPQ 225 (236)
T ss_dssp GGSCCHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHHHHHHHTCSSHHH
T ss_pred cCCCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCCCCHHH
Confidence 35699999999999999999999999999999999999888877776666443
No 125
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=71.37 E-value=1.8 Score=42.72 Aligned_cols=51 Identities=16% Similarity=0.059 Sum_probs=45.8
Q ss_pred cCCchHHHHHHhhhccCCchhHHHHhhhccccccccccccccccccccchh
Q 040406 90 NGSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENAAAPK 140 (566)
Q Consensus 90 ~~lS~re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~~lekl~~~s~K 140 (566)
..++.+|.+++..+.+|++..||++...++.++++.+.+....++.+..+.
T Consensus 196 ~~Lt~re~~vl~~~~~G~s~~eIA~~l~is~~TV~~~~~~~~~kl~~~~~~ 246 (265)
T 3qp6_A 196 MPLSQREYDIFHWMSRGKTNWEIATILNISERTVKFHVANVIRKLNANNRT 246 (265)
T ss_dssp CCCCHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSHH
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCCCCHH
Confidence 469999999999999999999999999999999999998888887766643
No 126
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=69.92 E-value=1.6 Score=36.44 Aligned_cols=51 Identities=8% Similarity=0.018 Sum_probs=41.2
Q ss_pred hccCCchHHHHHHhhhccCCchhHHHHhhhccccccccccccccccccccc
Q 040406 88 LANGSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENAAA 138 (566)
Q Consensus 88 l~~~lS~re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~~lekl~~~s 138 (566)
....++.++.+++..+..|.+..+|++...++..+++.+.+....++....
T Consensus 24 ~l~~Lt~~e~~vl~l~~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 74 (95)
T 3c57_A 24 PLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMER 74 (95)
T ss_dssp ---CCCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred HHhcCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 345689999999999999999999999999999999888877666655444
No 127
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=69.02 E-value=2 Score=35.30 Aligned_cols=51 Identities=14% Similarity=0.063 Sum_probs=42.2
Q ss_pred hccCCchHHHHHHhhhccCCchhHHHHhhhccccccccccccccccccccc
Q 040406 88 LANGSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENAAA 138 (566)
Q Consensus 88 l~~~lS~re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~~lekl~~~s 138 (566)
....++.++.+++..+..|.+..+|++...++..+++.+......++....
T Consensus 26 ~l~~Lt~~e~~vl~l~~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 76 (91)
T 2rnj_A 26 LYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQD 76 (91)
T ss_dssp TGGGCCSHHHHHHHHHHTTCCTTHHHHHHTCCHHHHHHHHHHHHHHTTCCS
T ss_pred HHhcCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCCC
Confidence 345688999999988999999999999999999999888777666655444
No 128
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=68.61 E-value=2.2 Score=40.76 Aligned_cols=51 Identities=10% Similarity=0.122 Sum_probs=44.7
Q ss_pred cCCchHHHHHHhhhccCCchhHHHHhhhccccccccccccccccccccchh
Q 040406 90 NGSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENAAAPK 140 (566)
Q Consensus 90 ~~lS~re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~~lekl~~~s~K 140 (566)
..+++++.+++..+.+|.+..||++...++..+++.+.+....++.+..+.
T Consensus 172 ~~Lt~~e~~vl~~~~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~~~~~ 222 (234)
T 1l3l_A 172 AWLDPKEATYLRWIAVGKTMEEIADVEGVKYNSVRVKLREAMKRFDVRSKA 222 (234)
T ss_dssp CCCCHHHHHHHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCSSHH
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCCCCHH
Confidence 469999999999999999999999999999999999988877777666543
No 129
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=64.54 E-value=2.5 Score=31.58 Aligned_cols=44 Identities=14% Similarity=0.037 Sum_probs=35.9
Q ss_pred HHHHHHhhhccCCchhHHHHhhhccccccccccccccccccccc
Q 040406 95 EKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENAAA 138 (566)
Q Consensus 95 re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~~lekl~~~s 138 (566)
++.+++..+..|.+..+|++...++..++..+.+....+.....
T Consensus 2 re~~vl~l~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~ 45 (61)
T 2jpc_A 2 RERQVLKLIDEGYTNHGISEKLHISIKTVETHRMNMMRKLQVHK 45 (61)
T ss_dssp HHHHHHHHHHTSCCSHHHHHHTCSCHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHCCCC
Confidence 56778888899999999999999999998888776666655544
No 130
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=61.77 E-value=4.3 Score=31.20 Aligned_cols=48 Identities=6% Similarity=-0.005 Sum_probs=39.2
Q ss_pred ccCCchHHHHHHhhhccCCchhHHHHhhhccccccccccccccccccc
Q 040406 89 ANGSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENA 136 (566)
Q Consensus 89 ~~~lS~re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~~lekl~~ 136 (566)
...+++++.+++..+..|.+..+|++...++..++..+.+....+...
T Consensus 9 ~~~L~~~e~~il~~~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 9 KPLLTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCCHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Confidence 356889999999889999999999999999998888777665554443
No 131
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=61.05 E-value=28 Score=32.02 Aligned_cols=54 Identities=22% Similarity=0.274 Sum_probs=40.4
Q ss_pred CcEEEEeCCCCC-------CCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEe
Q 040406 1 IDLVITDLHMPE-------MNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV 56 (566)
Q Consensus 1 pDLVLlDi~MPd-------mDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~ 56 (566)
+|.|+++-..|. ..+++.++++++.. ++||++..+-. .+.+.++++.|++.+..
T Consensus 129 ~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~pvia~GGI~-~~nv~~~~~~Ga~gv~v 189 (215)
T 1xi3_A 129 ADYLGAGSVFPTKTKEDARVIGLEGLRKIVESV-KIPVVAIGGIN-KDNAREVLKTGVDGIAV 189 (215)
T ss_dssp CSEEEEECSSCC----CCCCCHHHHHHHHHHHC-SSCEEEESSCC-TTTHHHHHTTTCSEEEE
T ss_pred CCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhC-CCCEEEECCcC-HHHHHHHHHcCCCEEEE
Confidence 477887754443 35788999988776 78988877666 66777888999998754
No 132
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=60.21 E-value=3.3 Score=32.48 Aligned_cols=49 Identities=16% Similarity=0.102 Sum_probs=39.7
Q ss_pred cCCchHHHHHHhhhccCCchhHHHHhhhccccccccccccccccccccc
Q 040406 90 NGSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENAAA 138 (566)
Q Consensus 90 ~~lS~re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~~lekl~~~s 138 (566)
..+++++.+++..+..|.+..+|++...++..+++.+......+.....
T Consensus 15 ~~L~~~e~~vl~l~~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~~~~ 63 (79)
T 1x3u_A 15 QTLSERERQVLSAVVAGLPNKSIAYDLDISPRTVEVHRANVMAKMKAKS 63 (79)
T ss_dssp HHHCHHHHHHHHHHTTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTTCCS
T ss_pred HhCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 4577888899988899999999999999999988887766666554444
No 133
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=59.50 E-value=39 Score=32.88 Aligned_cols=62 Identities=13% Similarity=0.218 Sum_probs=44.1
Q ss_pred EeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHH
Q 040406 6 TDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVW 68 (566)
Q Consensus 6 lDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI 68 (566)
+++-+-.-++++.++.|++++++ .+|-.-..-+.+.+.+++++||...+.--++.+.++.+.
T Consensus 42 iEvt~~t~~a~~~I~~l~~~~p~-~~IGAGTVlt~~~a~~ai~AGA~fivsP~~~~evi~~~~ 103 (217)
T 3lab_A 42 LEVTLRTEAGLAAISAIKKAVPE-AIVGAGTVCTADDFQKAIDAGAQFIVSPGLTPELIEKAK 103 (217)
T ss_dssp EEEETTSTTHHHHHHHHHHHCTT-SEEEEECCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHH
T ss_pred EEEeCCCccHHHHHHHHHHHCCC-CeEeeccccCHHHHHHHHHcCCCEEEeCCCcHHHHHHHH
Confidence 44555566899999999999987 455444455788899999999987776445555444433
No 134
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=59.08 E-value=11 Score=37.56 Aligned_cols=55 Identities=22% Similarity=0.251 Sum_probs=41.0
Q ss_pred HHHHHHHHHhCCCCcEEEEecCC------ChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 040406 16 LELQKEINEEFIHLPVMVMSSDD------RESVIMKSLASGAVFYMVKPVNPDALRNVWQYA 71 (566)
Q Consensus 16 ~eLLe~Lr~~~p~IPVIvLSa~~------d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~v 71 (566)
+++++++|+. .++|||+|+-.. ....+..|.++|++++|.-.+..+++...+..+
T Consensus 80 ~~~v~~ir~~-~~~Pii~m~y~n~v~~~g~~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~ 140 (271)
T 1ujp_A 80 LELVREVRAL-TEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLA 140 (271)
T ss_dssp HHHHHHHHHH-CCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHH
T ss_pred HHHHHHHHhc-CCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHH
Confidence 5778888887 689999985333 235567788999999999877777766655544
No 135
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=57.09 E-value=23 Score=35.92 Aligned_cols=54 Identities=11% Similarity=0.004 Sum_probs=43.8
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 040406 16 LELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYA 71 (566)
Q Consensus 16 ~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~v 71 (566)
-+.++++|+..|..+|.+-. ++.+.+.+|+++||+..+..-+++++++++++.+
T Consensus 186 ~~Av~~ar~~~~~~~IeVEv--~tl~ea~eAl~aGaD~I~LDn~~~~~l~~av~~~ 239 (287)
T 3tqv_A 186 AKAVTKAKKLDSNKVVEVEV--TNLDELNQAIAAKADIVMLDNFSGEDIDIAVSIA 239 (287)
T ss_dssp HHHHHHHHHHCTTSCEEEEE--SSHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCcEEEEe--CCHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHhh
Confidence 35777888777788887733 4557888999999999999999999999888754
No 136
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=56.01 E-value=24 Score=36.13 Aligned_cols=54 Identities=6% Similarity=0.096 Sum_probs=44.7
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 040406 16 LELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYA 71 (566)
Q Consensus 16 ~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~v 71 (566)
-+.++++|+..|..+|.+-.. +.+.+.+|+++||+-.+..-+++++++++++.+
T Consensus 195 ~~Av~~ar~~~p~~kIeVEv~--tl~e~~eAl~aGaDiImLDn~s~~~l~~av~~~ 248 (300)
T 3l0g_A 195 TLAIQRLRKNLKNEYIAIECD--NISQVEESLSNNVDMILLDNMSISEIKKAVDIV 248 (300)
T ss_dssp HHHHHHHHHHSSSCCEEEEES--SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEEEC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHhh
Confidence 357778888888888887554 468888999999999999999999999998754
No 137
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=55.26 E-value=6.7 Score=30.18 Aligned_cols=47 Identities=11% Similarity=0.088 Sum_probs=36.9
Q ss_pred cCCchHHHHHHhhhc-----cCCchhHHHHhhhccccccccccccccccccc
Q 040406 90 NGSSAEKISFLHDIV-----SGSSMIEEKESKTNSKRKASKRRKDELEGENA 136 (566)
Q Consensus 90 ~~lS~re~evL~~Ia-----qGsS~~EIae~k~IS~~k~~~~~k~~lekl~~ 136 (566)
..+++++.+++.... .|.+..||++...++..+++.+......++..
T Consensus 4 ~~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 4 AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CCCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGS
T ss_pred HcCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 457888888886665 89999999999999998888777666555543
No 138
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=55.13 E-value=21 Score=38.57 Aligned_cols=55 Identities=15% Similarity=0.158 Sum_probs=43.3
Q ss_pred CcEEEEeCCCCCCC-HHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEe
Q 040406 1 IDLVITDLHMPEMN-GLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV 56 (566)
Q Consensus 1 pDLVLlDi~MPdmD-G~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~ 56 (566)
+|+|.+|...+... -+++++++++.+|++|||+- ...+.+.+..++++||+....
T Consensus 244 ~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g-~v~t~e~a~~l~~aGaD~I~V 299 (496)
T 4fxs_A 244 VDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGG-NVATAEGARALIEAGVSAVKV 299 (496)
T ss_dssp CSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEE-EECSHHHHHHHHHHTCSEEEE
T ss_pred CceEEeccccccchHHHHHHHHHHHHCCCceEEEc-ccCcHHHHHHHHHhCCCEEEE
Confidence 58899998877543 35789999999989998873 234567788899999998875
No 139
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=54.57 E-value=19 Score=34.95 Aligned_cols=43 Identities=12% Similarity=0.142 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeC
Q 040406 13 MNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVK 57 (566)
Q Consensus 13 mDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~K 57 (566)
...+++++++++. ++|||.-.+-.+.+.+.++++.||++++.=
T Consensus 168 ~~~~~li~~l~~~--~ipvIA~GGI~t~~d~~~~~~~GadgV~VG 210 (229)
T 3q58_A 168 EPDLAMVTQLSHA--GCRVIAEGRYNTPALAANAIEHGAWAVTVG 210 (229)
T ss_dssp SCCHHHHHHHHTT--TCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred CCCHHHHHHHHHc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 4568999999875 899999999889999999999999998874
No 140
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=53.87 E-value=44 Score=32.97 Aligned_cols=71 Identities=15% Similarity=0.175 Sum_probs=50.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHh-CCCCcEEEEecCCChHHHHHHHhcCCcEE-EeCCCChHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEE-FIHLPVMVMSSDDRESVIMKSLASGAVFY-MVKPVNPDALRNVWQYA 71 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~-~p~IPVIvLSa~~d~~~~~~Al~aGA~dY-L~KP~~~eeL~~aI~~v 71 (566)
+|.||+|+.-.-.+.-++...++.. ...++++|=....+...+.++++.|++.. ++|--+.+++..+++.+
T Consensus 38 ~D~vilDlEhav~~~~k~~~~l~a~~~~~~~~~VRVn~~~~~di~~~ld~G~~gI~lP~v~saed~~~~~~~~ 110 (261)
T 3qz6_A 38 LDYFIVDCEHAAYTFREINHLVSVAKNAGVSVLVRIPQVDRAHVQRLLDIGAEGFMIPGVQSAETMRETVRLA 110 (261)
T ss_dssp CSEEEEESSSSCCCHHHHHHHHHHHHHHTCEEEEECSSCCHHHHHHHHHHTCCEEEETTCCSHHHHHHHHHHH
T ss_pred cCEEEEeccCCCCCHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHHh
Confidence 6999999998877776666666542 22455555555556678889999999874 44556788888776654
No 141
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=53.05 E-value=57 Score=29.66 Aligned_cols=73 Identities=8% Similarity=-0.029 Sum_probs=44.3
Q ss_pred CcEEEEeCCCCC-C-CHHHHHHHHHHhC-CCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPE-M-NGLELQKEINEEF-IHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPd-m-DG~eLLe~Lr~~~-p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
||+|.+-..+.. + .--++++.|++.. ++++|++- +.........+.+.|++.++..-.+.++....++..+..
T Consensus 70 ~diV~lS~~~~~~~~~~~~~i~~L~~~g~~~i~v~vG-G~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~~~ 145 (161)
T 2yxb_A 70 VDVIGVSILNGAHLHLMKRLMAKLRELGADDIPVVLG-GTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLAEE 145 (161)
T ss_dssp CSEEEEEESSSCHHHHHHHHHHHHHHTTCTTSCEEEE-ECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeechhhHHHHHHHHHHHHhcCCCCCEEEEe-CCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHHHH
Confidence 577777766543 2 2235667777764 36776654 444444444566899998676555666666777666654
No 142
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=52.71 E-value=77 Score=29.56 Aligned_cols=54 Identities=19% Similarity=0.250 Sum_probs=39.4
Q ss_pred CcEEEEeCCCCC-------CCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEe
Q 040406 1 IDLVITDLHMPE-------MNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV 56 (566)
Q Consensus 1 pDLVLlDi~MPd-------mDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~ 56 (566)
.|.|+++-..+. .-+++.++.+++.. ++||++..+- +.+.+.++++.||+.+..
T Consensus 131 aD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~-~~pvia~GGI-~~~nv~~~~~~Ga~gv~v 191 (221)
T 1yad_A 131 ADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRI-SIPVIAIGGM-TPDRLRDVKQAGADGIAV 191 (221)
T ss_dssp CSEEEEECCC----------CHHHHHHHHHHHC-CSCEEEESSC-CGGGHHHHHHTTCSEEEE
T ss_pred CCEEEECCccccCCCCCCCCCCHHHHHHHHHhC-CCCEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence 367777654332 23678888888766 8899888777 677888999999998665
No 143
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=49.86 E-value=75 Score=29.56 Aligned_cols=41 Identities=20% Similarity=0.365 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEe
Q 040406 15 GLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV 56 (566)
Q Consensus 15 G~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~ 56 (566)
.++.++++++.. ++|||+..+-...+.+.++++.||+.++.
T Consensus 186 ~~~~i~~l~~~~-~~pvia~GGi~~~~~~~~~~~~Ga~~v~v 226 (253)
T 1h5y_A 186 DVELIRRVADSV-RIPVIASGGAGRVEHFYEAAAAGADAVLA 226 (253)
T ss_dssp CHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHhc-CCCEEEeCCCCCHHHHHHHHHcCCcHHHH
Confidence 467888888775 89999888887778888889999999765
No 144
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=49.36 E-value=28 Score=33.71 Aligned_cols=43 Identities=16% Similarity=0.164 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeC
Q 040406 13 MNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVK 57 (566)
Q Consensus 13 mDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~K 57 (566)
...+++++++++. ++|||.-.+-.+.+.+.++++.||++++.=
T Consensus 168 ~~~~~~i~~l~~~--~ipvIA~GGI~t~~d~~~~~~~GadgV~VG 210 (232)
T 3igs_A 168 EPDLPLVKALHDA--GCRVIAEGRYNSPALAAEAIRYGAWAVTVG 210 (232)
T ss_dssp SCCHHHHHHHHHT--TCCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred CCCHHHHHHHHhc--CCcEEEECCCCCHHHHHHHHHcCCCEEEEe
Confidence 3468999999876 899999999888999999999999998864
No 145
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=49.34 E-value=38 Score=34.93 Aligned_cols=53 Identities=13% Similarity=0.142 Sum_probs=43.4
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHH
Q 040406 16 LELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQY 70 (566)
Q Consensus 16 ~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~ 70 (566)
-+.++++|+..|..+|++.... .+.+.+|+++|++.....-+++++|+++++.
T Consensus 219 ~~Av~~ar~~~p~~kIeVEVdt--ldea~eAl~aGaD~I~LDn~~~~~l~~av~~ 271 (320)
T 3paj_A 219 RQAISTAKQLNPGKPVEVETET--LAELEEAISAGADIIMLDNFSLEMMREAVKI 271 (320)
T ss_dssp HHHHHHHHHHSTTSCEEEEESS--HHHHHHHHHTTCSEEEEESCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeEEEEECC--HHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Confidence 4677788888888888775543 5677889999999999999999999988865
No 146
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A
Probab=48.39 E-value=4.2 Score=41.48 Aligned_cols=46 Identities=20% Similarity=0.177 Sum_probs=36.0
Q ss_pred hhhchhhhhHHHHHHHHhcccchhHHHHHHhcCCCC-CCHHHHHHHHHHHHHHHHH-hhhh
Q 040406 144 VVWTNSLHNRFLQAIRHITLEKAVPKKILEFMNVPG-LTRENVASHLQKYRIFLKR-VADD 202 (566)
Q Consensus 144 L~WTsELHeKFLaAIgKLGlEKAIPKrILElMnvpG-LTrEEVaSHLQKyrl~lkr-l~~~ 202 (566)
+....-|| +|+++. +|+.|+ .+++ ||.+| +..+++|..++.+ +++.
T Consensus 196 l~~aaLLH-----DIGk~~----ip~~il---~k~~~L~~~E-~~~~~~H~~~G~~~ll~~ 243 (328)
T 3tm8_A 196 LTLGALLH-----DYGHHH----SPLNLN---QPLDSMSPED-LALWKKHPIEGAQKVQDK 243 (328)
T ss_dssp HHHHHHHT-----TGGGTT----CSCCCS---SCGGGSCHHH-HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHh-----cCCccc----CCHHHH---hCCCCCCHHH-HHHHHHHHHHHHHHHHHh
Confidence 44455555 899887 666666 7888 99999 8999999999999 6654
No 147
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=47.92 E-value=31 Score=31.83 Aligned_cols=64 Identities=16% Similarity=0.156 Sum_probs=41.8
Q ss_pred EeCCCCC--CCHHHHHHHHHHhCCCCcEEE--EecCCChHHHHHHHhcCCcEEEeCCCCh-HHHHHHHH
Q 040406 6 TDLHMPE--MNGLELQKEINEEFIHLPVMV--MSSDDRESVIMKSLASGAVFYMVKPVNP-DALRNVWQ 69 (566)
Q Consensus 6 lDi~MPd--mDG~eLLe~Lr~~~p~IPVIv--LSa~~d~~~~~~Al~aGA~dYL~KP~~~-eeL~~aI~ 69 (566)
+++.++- .+|.++++.|++..++.||++ +..+-....+..+.++||+....-+... +.+..+++
T Consensus 29 iev~~~~~~~~g~~~i~~l~~~~~~~~i~~~l~~~di~~~~~~~a~~~Gad~v~vh~~~~~~~~~~~~~ 97 (207)
T 3ajx_A 29 IELGTPLIKAEGLSVITAVKKAHPDKIVFADMKTMDAGELEADIAFKAGADLVTVLGSADDSTIAGAVK 97 (207)
T ss_dssp EEECHHHHHHHCTHHHHHHHHHSTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSCHHHHHHHHH
T ss_pred EEECcHHHHhhCHHHHHHHHHhCCCCeEEEEEEecCccHHHHHHHHhCCCCEEEEeccCChHHHHHHHH
Confidence 4444431 356788999998877888885 5442123447788999999988776554 44444433
No 148
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=47.17 E-value=33 Score=34.57 Aligned_cols=57 Identities=21% Similarity=0.207 Sum_probs=43.1
Q ss_pred HHHHHHHHHhCCC-CcEEEEecCCChHHHHHHHhcCCcEEEe-----CCCChHHHHHHHHHHH
Q 040406 16 LELQKEINEEFIH-LPVMVMSSDDRESVIMKSLASGAVFYMV-----KPVNPDALRNVWQYAV 72 (566)
Q Consensus 16 ~eLLe~Lr~~~p~-IPVIvLSa~~d~~~~~~Al~aGA~dYL~-----KP~~~eeL~~aI~~vL 72 (566)
.++++.+++..++ +|||+=.+-.+.+.+..++++||++.+. |.-++....+.+..++
T Consensus 165 ~~~L~~i~~~~~~~vPVI~~GGI~tpsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av 227 (268)
T 2htm_A 165 RALLELFAREKASLPPVVVDAGLGLPSHAAEVMELGLDAVLVNTAIAEAQDPPAMAEAFRLAV 227 (268)
T ss_dssp HHHHHHHHHTTTTSSCBEEESCCCSHHHHHHHHHTTCCEEEESHHHHTSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHH
Confidence 5778899885567 9999977778899999999999999875 4344555555555444
No 149
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=47.00 E-value=35 Score=36.74 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=42.8
Q ss_pred CcEEEEeCCCCCCC-HHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEe
Q 040406 1 IDLVITDLHMPEMN-GLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV 56 (566)
Q Consensus 1 pDLVLlDi~MPdmD-G~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~ 56 (566)
+|+|.+|...+... -.++++++++.++++|||+-. ..+.+.+..+.++||+....
T Consensus 242 ~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~-v~t~e~a~~l~~aGaD~I~v 297 (490)
T 4avf_A 242 VDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGN-IATAEAAKALAEAGADAVKV 297 (490)
T ss_dssp CSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEE-ECSHHHHHHHHHTTCSEEEE
T ss_pred cceEEecccCCcchhHHHHHHHHHHHCCCceEEEee-eCcHHHHHHHHHcCCCEEEE
Confidence 58899998776533 357899999998888888732 34567788999999998876
No 150
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=46.65 E-value=57 Score=30.91 Aligned_cols=52 Identities=17% Similarity=0.298 Sum_probs=41.4
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEe------CCCChHHHHHHH
Q 040406 16 LELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV------KPVNPDALRNVW 68 (566)
Q Consensus 16 ~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~------KP~~~eeL~~aI 68 (566)
+++++++++.. ++|||...+-.+.+.+.++++.||++.+. .|++++++++.+
T Consensus 185 ~~~i~~l~~~~-~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~~~~~~~~~~l 242 (252)
T 1ka9_F 185 LRLTRMVAEAV-GVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGEIPIPKLKRYL 242 (252)
T ss_dssp HHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 88999998876 89999998888888888888999999765 345666655543
No 151
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=46.35 E-value=77 Score=31.00 Aligned_cols=58 Identities=10% Similarity=0.174 Sum_probs=40.5
Q ss_pred EEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHH
Q 040406 5 ITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDA 63 (566)
Q Consensus 5 LlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~ee 63 (566)
++.+.+-..++.+.+++|++..+++ +|-.-.--+.+.+..|+++||+..+.--++.+.
T Consensus 62 ~iEvt~~t~~a~e~I~~l~~~~~~~-~iGaGTVlt~~~a~~Ai~AGA~fIvsP~~~~~v 119 (232)
T 4e38_A 62 AAEITFRSDAAVEAIRLLRQAQPEM-LIGAGTILNGEQALAAKEAGATFVVSPGFNPNT 119 (232)
T ss_dssp EEEEETTSTTHHHHHHHHHHHCTTC-EEEEECCCSHHHHHHHHHHTCSEEECSSCCHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHhCCCC-EEeECCcCCHHHHHHHHHcCCCEEEeCCCCHHH
Confidence 3455566678999999999988764 333333456888999999999766654344433
No 152
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=45.71 E-value=36 Score=34.68 Aligned_cols=54 Identities=17% Similarity=0.132 Sum_probs=42.3
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 040406 16 LELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYA 71 (566)
Q Consensus 16 ~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~v 71 (566)
-+.++++|+..|..+|.+-.. +.+.+.+|+++|++..+..-+++++|+++++.+
T Consensus 197 ~~Av~~~r~~~p~~~ieVEvd--tlde~~eAl~aGaD~I~LDn~~~~~l~~av~~i 250 (298)
T 3gnn_A 197 GEALDAAFALNAEVPVQIEVE--TLDQLRTALAHGARSVLLDNFTLDMMRDAVRVT 250 (298)
T ss_dssp HHHHHHHHHHC--CCCEEEES--SHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEEeC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 357778888888888777644 446788899999999999999999999998765
No 153
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.67 E-value=32 Score=27.29 Aligned_cols=56 Identities=25% Similarity=0.324 Sum_probs=39.4
Q ss_pred hhhhchhhhhHHHHHHHHhcccch---hHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhhhhc
Q 040406 143 KVVWTNSLHNRFLQAIRHITLEKA---VPKKILEFMNVPGLTRENVASHLQKYRIFLKRVADDG 203 (566)
Q Consensus 143 rL~WTsELHeKFLaAIgKLGlEKA---IPKrILElMnvpGLTrEEVaSHLQKyrl~lkrl~~~~ 203 (566)
+-.||.+-+..|+.+|.+.|.+.. -=..|-+. +++=|..++.+|.++|- +++.+.+
T Consensus 8 ~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~--~~~Rt~~qcr~r~~~~l---~~~~k~g 66 (75)
T 2yum_A 8 NQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADE--LGNRTAKQVASQVQKYF---IKLTKAG 66 (75)
T ss_dssp SSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHH--HSSSCHHHHHHHHHHHH---GGGSTTC
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHH--hCCCCHHHHHHHHHHHH---HHHHhcC
Confidence 346999999999999999995331 11234444 47889999999988775 4444443
No 154
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=44.94 E-value=20 Score=34.76 Aligned_cols=56 Identities=23% Similarity=0.302 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhCCCCcEEEEecCCCh--HHHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 040406 15 GLELQKEINEEFIHLPVMVMSSDDRE--SVIMKSLASGAVFYMVKPVNPDALRNVWQYA 71 (566)
Q Consensus 15 G~eLLe~Lr~~~p~IPVIvLSa~~d~--~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~v 71 (566)
++++++++|+. .++||++++-.+.. ..+.++.+.||++++.-....+++.+.+..+
T Consensus 82 ~~~~i~~ir~~-~~~Pv~~m~~~~~~~~~~~~~a~~aGadgv~v~d~~~~~~~~~~~~~ 139 (262)
T 1rd5_A 82 VLEMLREVTPE-LSCPVVLLSYYKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEA 139 (262)
T ss_dssp HHHHHHHHGGG-CSSCEEEECCSHHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHHH
T ss_pred HHHHHHHHHhc-CCCCEEEEecCcHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHHH
Confidence 45677788776 58999988632211 0123488999999998766666666555543
No 155
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=44.26 E-value=1.1e+02 Score=29.95 Aligned_cols=71 Identities=13% Similarity=0.089 Sum_probs=48.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHh-CCCCcEEEEecCCChHHHHHHHhcCCcE-EEeCCCChHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEE-FIHLPVMVMSSDDRESVIMKSLASGAVF-YMVKPVNPDALRNVWQYA 71 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~-~p~IPVIvLSa~~d~~~~~~Al~aGA~d-YL~KP~~~eeL~~aI~~v 71 (566)
+|.|++|+.-.-.+--++...++.. ....++++=+...+...+.++++.|++. .+.|--+.++++.+++.+
T Consensus 40 aD~v~lDlE~~~~~~~~~~~~~~a~~~~~~~~~VRv~~~~~~~i~~~l~~g~~~I~~P~V~s~ee~~~~~~~~ 112 (267)
T 2vws_A 40 YDWLLIDGEHAPNTIQDLYHQLQAVAPYASQPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSAT 112 (267)
T ss_dssp CSEEEEETTTSCCCHHHHHHHHHHHTTSSSEEEEECSSCCHHHHHHHHHTTCCEEEECCCCSHHHHHHHHHHT
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCCHHHHHHHHHHH
Confidence 5899999976555554555555432 2356777777777788888999999987 444445788877766543
No 156
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=44.06 E-value=51 Score=30.44 Aligned_cols=59 Identities=20% Similarity=0.201 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHhCCCCcEEE--EecCCChHHHHHHHhcCCcEEEeCCCCh-HHHHHHHHHH
Q 040406 13 MNGLELQKEINEEFIHLPVMV--MSSDDRESVIMKSLASGAVFYMVKPVNP-DALRNVWQYA 71 (566)
Q Consensus 13 mDG~eLLe~Lr~~~p~IPVIv--LSa~~d~~~~~~Al~aGA~dYL~KP~~~-eeL~~aI~~v 71 (566)
..|+++++.||+..+++||.+ +..+.....+..+.++||+.++.-.... +.+...++.+
T Consensus 38 ~~g~~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~~~~~~~~~~~~~~ 99 (211)
T 3f4w_A 38 REGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVTDVLTIQSCIRAA 99 (211)
T ss_dssp HHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHH
T ss_pred hccHHHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCEEEEeCCCChhHHHHHHHHH
Confidence 357889999999877888853 3333333448889999999988855443 4444444443
No 157
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=43.97 E-value=38 Score=35.34 Aligned_cols=55 Identities=11% Similarity=-0.047 Sum_probs=40.2
Q ss_pred CcEEEEeCCCCCCC-HHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEe
Q 040406 1 IDLVITDLHMPEMN-GLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV 56 (566)
Q Consensus 1 pDLVLlDi~MPdmD-G~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~ 56 (566)
+|+|.+|....... -++.+++||+.++++|||+=. ..+.+.+..++++||+...+
T Consensus 113 vdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~-V~T~e~A~~a~~aGaD~I~V 168 (361)
T 3r2g_A 113 ADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGN-VATYAGADYLASCGADIIKA 168 (361)
T ss_dssp CCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEE-ECSHHHHHHHHHTTCSEEEE
T ss_pred CCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcC-cCCHHHHHHHHHcCCCEEEE
Confidence 57888887653322 257888999888888888721 23567788999999998886
No 158
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=43.92 E-value=1.1e+02 Score=30.60 Aligned_cols=70 Identities=16% Similarity=0.054 Sum_probs=48.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHh-CCCCcEEEEecCCChHHHHHHHhcCCcEE-EeCCCChHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEE-FIHLPVMVMSSDDRESVIMKSLASGAVFY-MVKPVNPDALRNVWQY 70 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~-~p~IPVIvLSa~~d~~~~~~Al~aGA~dY-L~KP~~~eeL~~aI~~ 70 (566)
+|.|++|+.-...+--.+...++.. ....+++|=+...+...+..+++.|++.. +.|--+.++++.+++.
T Consensus 61 aD~v~lDlEh~~~~~~~~~~~l~a~~~~~~~~~VRv~~~d~~di~~~ld~ga~~ImlP~V~saeea~~~~~~ 132 (287)
T 2v5j_A 61 FDWLLIDGEHAPNNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQLLDVGTQTLLVPMVQNADEAREAVRA 132 (287)
T ss_dssp CSEEEEESSSSSCCHHHHHHHHHHHTTSSSEEEEECSSSCHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHH
T ss_pred CCEEEEeCCCccchHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHH
Confidence 5899999976655544455545432 23577888888777888889999999874 4444578887766654
No 159
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=43.56 E-value=36 Score=32.67 Aligned_cols=54 Identities=11% Similarity=0.215 Sum_probs=39.9
Q ss_pred EEEEeCCCCCC---CHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeC
Q 040406 3 LVITDLHMPEM---NGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVK 57 (566)
Q Consensus 3 LVLlDi~MPdm---DG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~K 57 (566)
|.+.|...... .-+++++++++.. .+|||+.....+.+.+.++++.||+..+.=
T Consensus 47 i~v~d~~~~~~~~g~~~~~i~~i~~~~-~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg 103 (266)
T 2w6r_A 47 ILLTSIDRDGTKSGYDTEMIRFVRPLT-TLPIIASGGAGKMEHFLEAFLAGADKALAA 103 (266)
T ss_dssp EEEEETTTSSCSSCCCHHHHHHHGGGC-CSCEEEESCCCSTHHHHHHHHHTCSEEECC
T ss_pred EEEEecCcccCCCcccHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCcHhhhh
Confidence 44566543321 1278888888765 899999888778888889999999987764
No 160
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=43.22 E-value=41 Score=36.38 Aligned_cols=55 Identities=16% Similarity=0.265 Sum_probs=43.1
Q ss_pred CcEEEEeCCCCCCCH-HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEe
Q 040406 1 IDLVITDLHMPEMNG-LELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV 56 (566)
Q Consensus 1 pDLVLlDi~MPdmDG-~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~ 56 (566)
+|+|.+|...+...+ +++++++++.++++|||+-. ..+.+.+.++.++||+....
T Consensus 269 vd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~-v~t~e~a~~~~~aGad~i~v 324 (511)
T 3usb_A 269 VDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGN-VATAEATKALIEAGANVVKV 324 (511)
T ss_dssp CSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEE-ECSHHHHHHHHHHTCSEEEE
T ss_pred cceEEecccccchhhhhhHHHHHHHhCCCceEEeee-eccHHHHHHHHHhCCCEEEE
Confidence 478999988776554 46999999999888888643 34667788999999998875
No 161
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*
Probab=43.02 E-value=23 Score=36.77 Aligned_cols=59 Identities=10% Similarity=-0.018 Sum_probs=44.8
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEe------C-CCChHHHHHHHHHHHHh
Q 040406 16 LELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV------K-PVNPDALRNVWQYAVTS 74 (566)
Q Consensus 16 ~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~------K-P~~~eeL~~aI~~vL~~ 74 (566)
+++++++++..+++|||...+-.+.+.+.+++.+||+.... . |.-..++.+-++..+..
T Consensus 265 ~~~i~~v~~~~~~ipII~~GGI~s~~da~~~l~aGAd~V~vgra~l~~GP~~~~~i~~~l~~~m~~ 330 (354)
T 4ef8_A 265 LANINAFYRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSELLGVMAK 330 (354)
T ss_dssp HHHHHHHHHHCTTSEEEEESCCCSHHHHHHHHHHTEEEEEECHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEECCcCCHHHHHHHHHcCCCEEEEhHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 78888998886689999999999999999999999887553 3 55455555555555443
No 162
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=42.65 E-value=46 Score=34.66 Aligned_cols=55 Identities=15% Similarity=0.166 Sum_probs=39.5
Q ss_pred CcEEEEeCCCCCC-CHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEe
Q 040406 1 IDLVITDLHMPEM-NGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV 56 (566)
Q Consensus 1 pDLVLlDi~MPdm-DG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~ 56 (566)
+|+|.+|...... .-++.++++++.+++++||+-+. .+.+.+.++.++||+....
T Consensus 121 vd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v-~t~e~A~~a~~aGAD~I~v 176 (366)
T 4fo4_A 121 VDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNV-ATAEGARALIEAGVSAVKV 176 (366)
T ss_dssp CSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEE-CSHHHHHHHHHHTCSEEEE
T ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeee-CCHHHHHHHHHcCCCEEEE
Confidence 4788888643222 23567888998888888876333 3567788899999998877
No 163
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=41.50 E-value=53 Score=33.11 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=40.2
Q ss_pred HHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 040406 17 ELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYA 71 (566)
Q Consensus 17 eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~v 71 (566)
+.++.+|+..+....|.++. .+.+.+.+|++.||+..+..++.++.++.+++.+
T Consensus 184 ~av~~ar~~~~~~~~IgVev-~t~eea~eA~~aGaD~I~ld~~~~~~~k~av~~v 237 (286)
T 1x1o_A 184 EAVRRAKARAPHYLKVEVEV-RSLEELEEALEAGADLILLDNFPLEALREAVRRV 237 (286)
T ss_dssp HHHHHHHHHSCTTSCEEEEE-SSHHHHHHHHHHTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEEEe-CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 45677787776543344454 3477788999999999999999999998777643
No 164
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=40.97 E-value=62 Score=32.85 Aligned_cols=56 Identities=14% Similarity=0.066 Sum_probs=46.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHhcCCcEEEeCC
Q 040406 2 DLVITDLHMPEMNGLELQKEINEEFI-HLPVMVMSSDDRESVIMKSLASGAVFYMVKP 58 (566)
Q Consensus 2 DLVLlDi~MPdmDG~eLLe~Lr~~~p-~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP 58 (566)
+||.+|..- ...-.++++++++... .+||++=-+-.+.+.+.+++++||+..++--
T Consensus 201 ~lV~LD~~~-~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGS 257 (286)
T 3vk5_A 201 HMVYLYSRN-EHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAG 257 (286)
T ss_dssp SEEEEECSS-SCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESG
T ss_pred CEEEEcCCC-CcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECc
Confidence 678888754 3344689999998764 7999988888899999999999999988865
No 165
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=40.51 E-value=53 Score=31.15 Aligned_cols=56 Identities=18% Similarity=0.223 Sum_probs=40.0
Q ss_pred CcEEEEeCCCCCC-------CHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeC
Q 040406 1 IDLVITDLHMPEM-------NGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVK 57 (566)
Q Consensus 1 pDLVLlDi~MPdm-------DG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~K 57 (566)
.|.|+++-..|+. .+++.++++++..+++||++.-+-.. +.+.++++.||+.++.=
T Consensus 139 ~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~~~~pi~v~GGI~~-~ni~~~~~aGaD~vvvG 201 (228)
T 1h1y_A 139 VELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGP-STIDVAASAGANCIVAG 201 (228)
T ss_dssp CSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEEESSCST-TTHHHHHHHTCCEEEES
T ss_pred CCEEEEEeecCCCCcccCCHHHHHHHHHHHHhcCCCCEEEECCcCH-HHHHHHHHcCCCEEEEC
Confidence 4788888777753 34677788887766788776665544 56777888899997763
No 166
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=40.36 E-value=71 Score=31.20 Aligned_cols=55 Identities=20% Similarity=0.141 Sum_probs=38.9
Q ss_pred CcEEEEeCCCCC-------CCHHHHHHHHHHhC-CCCcEEEEecCCChHHHHHHHhcCCcEEEe
Q 040406 1 IDLVITDLHMPE-------MNGLELQKEINEEF-IHLPVMVMSSDDRESVIMKSLASGAVFYMV 56 (566)
Q Consensus 1 pDLVLlDi~MPd-------mDG~eLLe~Lr~~~-p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~ 56 (566)
+|.|.+.-..|. .-|++.++++++.. .++|||.+.+- +.+.+..+++.||+++..
T Consensus 156 aDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI-~~~ni~~~~~aGa~gvav 218 (243)
T 3o63_A 156 ADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGI-NAQRLPAVLDAGARRIVV 218 (243)
T ss_dssp CSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEESSC-CTTTHHHHHHTTCCCEEE
T ss_pred CCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEecCC-CHHHHHHHHHcCCCEEEE
Confidence 366666543332 23688888888753 48999999887 566677889999999775
No 167
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=39.59 E-value=58 Score=33.51 Aligned_cols=54 Identities=17% Similarity=0.182 Sum_probs=38.4
Q ss_pred cEEEEeCCCCC-CCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEe
Q 040406 2 DLVITDLHMPE-MNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV 56 (566)
Q Consensus 2 DLVLlDi~MPd-mDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~ 56 (566)
|+|.+|+.... .+-++.+++|++..+++|||+=+. .+.+.+.++.++||+...+
T Consensus 134 ~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~g~v-~t~e~A~~a~~aGaD~I~v 188 (351)
T 2c6q_A 134 KYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNV-VTGEMVEELILSGADIIKV 188 (351)
T ss_dssp CEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEEEEE-CSHHHHHHHHHTTCSEEEE
T ss_pred CEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEEEeC-CCHHHHHHHHHhCCCEEEE
Confidence 56666654322 224678888999888889886333 4577888999999998755
No 168
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=38.45 E-value=61 Score=32.69 Aligned_cols=55 Identities=11% Similarity=0.224 Sum_probs=42.5
Q ss_pred HHHHHHHHHhCCC-CcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHH
Q 040406 16 LELQKEINEEFIH-LPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAV 72 (566)
Q Consensus 16 ~eLLe~Lr~~~p~-IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL 72 (566)
.+.++.+|+..+. .+|.+ .. ++.+.+.+|+++||+..+.-.+++++++++++.+-
T Consensus 180 ~~av~~ar~~~~~~~~I~V-EV-~tleea~eA~~aGaD~I~LDn~~~e~l~~av~~l~ 235 (285)
T 1o4u_A 180 ERAVQEVRKIIPFTTKIEV-EV-ENLEDALRAVEAGADIVMLDNLSPEEVKDISRRIK 235 (285)
T ss_dssp HHHHHHHHTTSCTTSCEEE-EE-SSHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCceEEE-Ee-CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhh
Confidence 4567777777766 55555 43 35788889999999999899999999999887653
No 169
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=38.34 E-value=1.3e+02 Score=28.82 Aligned_cols=55 Identities=16% Similarity=0.255 Sum_probs=39.6
Q ss_pred CcEEEEeCCCCCCCH-------HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEe
Q 040406 1 IDLVITDLHMPEMNG-------LELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV 56 (566)
Q Consensus 1 pDLVLlDi~MPdmDG-------~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~ 56 (566)
+|.|++....|+.+| ++-++++|+..++++|. +.+--..+.+..++++||+.++.
T Consensus 135 ~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~~~~~I~-VdGGI~~~t~~~~~~aGAd~~Vv 196 (228)
T 3ovp_A 135 IDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIE-VDGGVGPDTVHKCAEAGANMIVS 196 (228)
T ss_dssp CSEEEEESSCTTTCSCCCCGGGHHHHHHHHHHCTTCEEE-EESSCSTTTHHHHHHHTCCEEEE
T ss_pred CCeEEEeeecCCCCCcccCHHHHHHHHHHHHhcCCCCEE-EeCCcCHHHHHHHHHcCCCEEEE
Confidence 477887766777655 55577778777666654 45555678888999999999765
No 170
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=38.32 E-value=72 Score=29.36 Aligned_cols=41 Identities=7% Similarity=-0.034 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEe
Q 040406 15 GLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV 56 (566)
Q Consensus 15 G~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~ 56 (566)
+++.++++++..+++||++-.+-. .+.+.++++.||+.++.
T Consensus 146 ~~~~i~~l~~~~~~~~i~~~gGI~-~~~~~~~~~~Gad~vvv 186 (211)
T 3f4w_A 146 PIDDLITMLKVRRKARIAVAGGIS-SQTVKDYALLGPDVVIV 186 (211)
T ss_dssp SHHHHHHHHHHCSSCEEEEESSCC-TTTHHHHHTTCCSEEEE
T ss_pred CHHHHHHHHHHcCCCcEEEECCCC-HHHHHHHHHcCCCEEEE
Confidence 578889998887788888766654 77788899999999765
No 171
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=38.20 E-value=62 Score=34.69 Aligned_cols=55 Identities=15% Similarity=0.157 Sum_probs=41.0
Q ss_pred CcEEEEeCCCCCCCH-HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEe
Q 040406 1 IDLVITDLHMPEMNG-LELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV 56 (566)
Q Consensus 1 pDLVLlDi~MPdmDG-~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~ 56 (566)
+|+|.+|......+. .++++++++..+++|||+-+. ...+.+.++.++||+.+..
T Consensus 268 ~d~v~i~~~~G~~~~~~~~i~~i~~~~~~~pvi~~~v-~t~~~a~~l~~aGad~I~v 323 (514)
T 1jcn_A 268 VDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNV-VTAAQAKNLIDAGVDGLRV 323 (514)
T ss_dssp CSEEEECCSCCCSHHHHHHHHHHHHHCTTCEEEEEEE-CSHHHHHHHHHHTCSEEEE
T ss_pred CCEEEeeccCCcchhHHHHHHHHHHhCCCCceEeccc-chHHHHHHHHHcCCCEEEE
Confidence 477888776544333 588999999888899986433 4567788899999988766
No 172
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=37.49 E-value=21 Score=28.89 Aligned_cols=49 Identities=8% Similarity=-0.002 Sum_probs=36.7
Q ss_pred hhccCCchHHHHHHhhhc-----cCCchhHHHHhhhcccccccccccccccccc
Q 040406 87 SLANGSSAEKISFLHDIV-----SGSSMIEEKESKTNSKRKASKRRKDELEGEN 135 (566)
Q Consensus 87 ~l~~~lS~re~evL~~Ia-----qGsS~~EIae~k~IS~~k~~~~~k~~lekl~ 135 (566)
.....+++++.+++.... .+.+..+|+....++..+++.+......++.
T Consensus 14 ~~l~~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr 67 (87)
T 1tty_A 14 KVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLR 67 (87)
T ss_dssp HHHTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHB
T ss_pred HHHHhCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 344567888888885543 7999999999999999888877666555443
No 173
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=36.72 E-value=1.9e+02 Score=28.09 Aligned_cols=70 Identities=9% Similarity=-0.051 Sum_probs=47.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHh-CCCCcEEEEecCCChHHHHHHHhcCCcE-EEeCCCChHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEE-FIHLPVMVMSSDDRESVIMKSLASGAVF-YMVKPVNPDALRNVWQY 70 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~-~p~IPVIvLSa~~d~~~~~~Al~aGA~d-YL~KP~~~eeL~~aI~~ 70 (566)
+|.|++|+.-...+--++...++.. ....++++=+...+...+..+++.|++. .++|--+.++++.+++.
T Consensus 41 aD~v~lDlEd~p~~~~~a~~~~~~~~~~~~~~~VRv~~~~~~~i~~~l~~g~~gI~~P~V~s~~ev~~~~~~ 112 (256)
T 1dxe_A 41 FDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETKEEAELAVAS 112 (256)
T ss_dssp CSEEEEESSSSSCCHHHHHHHHHHTTTCSSEEEEECSSSCHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHT
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCCCHHHHHHHHhcCCceeeecCcCCHHHHHHHHHH
Confidence 5899999976533333333333322 2357788888877888888999999987 44555678888666543
No 174
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=36.43 E-value=1.3e+02 Score=28.27 Aligned_cols=40 Identities=13% Similarity=0.231 Sum_probs=34.4
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEe
Q 040406 16 LELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV 56 (566)
Q Consensus 16 ~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~ 56 (566)
+++++++++.. ++|||+..+-.+.+.+.++++.||++++.
T Consensus 184 ~~~~~~l~~~~-~ipvia~GGI~~~~d~~~~~~~Gadgv~v 223 (253)
T 1thf_D 184 TEMIRFVRPLT-TLPIIASGGAGKMEHFLEAFLAGADAALA 223 (253)
T ss_dssp HHHHHHHGGGC-CSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCChHHHH
Confidence 78899998765 89999988888888888999999998765
No 175
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=36.10 E-value=17 Score=35.18 Aligned_cols=49 Identities=22% Similarity=0.123 Sum_probs=41.6
Q ss_pred cCCchHHHHHHhhhccCCchhHHHHhhhccccccccccccccccccccc
Q 040406 90 NGSSAEKISFLHDIVSGSSMIEEKESKTNSKRKASKRRKDELEGENAAA 138 (566)
Q Consensus 90 ~~lS~re~evL~~IaqGsS~~EIae~k~IS~~k~~~~~k~~lekl~~~s 138 (566)
..+++++++++....+|.+..||++...++..+++.+......++....
T Consensus 196 ~~L~~~erevl~L~~~G~s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~~ 244 (258)
T 3clo_A 196 NILSEREKEILRCIRKGLSSKEIAATLYISVNTVNRHRQNILEKLSVGN 244 (258)
T ss_dssp TSSCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCSS
T ss_pred ccCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 5689999999988889999999999999999999888877766655444
No 176
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=36.05 E-value=32 Score=34.59 Aligned_cols=56 Identities=18% Similarity=0.176 Sum_probs=42.9
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeC-----CCChHHHHHHHHHHH
Q 040406 16 LELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVK-----PVNPDALRNVWQYAV 72 (566)
Q Consensus 16 ~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~K-----P~~~eeL~~aI~~vL 72 (566)
+++++.|++. +++|||+=.+-.+.+.+..|+++||++.++- .-++..+...+..++
T Consensus 176 ~~lI~~I~e~-~~vPVI~eGGI~TPsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av 236 (265)
T 1wv2_A 176 PYNLRIILEE-AKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAI 236 (265)
T ss_dssp HHHHHHHHHH-CSSCBEEESCCCSHHHHHHHHHHTCSEEEESHHHHTSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHH
Confidence 7899999985 5899999777788999999999999998754 334555555554444
No 177
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=35.30 E-value=59 Score=32.00 Aligned_cols=58 Identities=16% Similarity=0.143 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHhCCCCcEEE-EecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 040406 14 NGLELQKEINEEFIHLPVMV-MSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYA 71 (566)
Q Consensus 14 DG~eLLe~Lr~~~p~IPVIv-LSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~v 71 (566)
-|.++++.||+..|++|+.+ +--.+....+..+.++||+.+..-....+.+.+.++.+
T Consensus 72 ~G~~~v~~lr~~~p~~~ldvHLmv~~p~~~i~~~~~aGAd~itvH~Ea~~~~~~~i~~i 130 (246)
T 3inp_A 72 FGPMVLKALRDYGITAGMDVHLMVKPVDALIESFAKAGATSIVFHPEASEHIDRSLQLI 130 (246)
T ss_dssp CCHHHHHHHHHHTCCSCEEEEEECSSCHHHHHHHHHHTCSEEEECGGGCSCHHHHHHHH
T ss_pred cCHHHHHHHHHhCCCCeEEEEEeeCCHHHHHHHHHHcCCCEEEEccccchhHHHHHHHH
Confidence 47899999999887788755 33444456777888999998877765455666666655
No 178
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=35.08 E-value=90 Score=31.36 Aligned_cols=55 Identities=9% Similarity=0.029 Sum_probs=43.5
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHH
Q 040406 16 LELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAV 72 (566)
Q Consensus 16 ~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL 72 (566)
-+.++++|+..|..+|.+-.. +.+.+.+++++|++-.+.-.+++++++++++.+-
T Consensus 182 ~~av~~ar~~~~~~~I~Vev~--t~eea~eal~aGaD~I~LDn~~~~~~~~~v~~l~ 236 (284)
T 1qpo_A 182 VDALRAVRNAAPDLPCEVEVD--SLEQLDAVLPEKPELILLDNFAVWQTQTAVQRRD 236 (284)
T ss_dssp HHHHHHHHHHCTTSCEEEEES--SHHHHHHHGGGCCSEEEEETCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEEeC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhh
Confidence 357777888877766666443 4688889999999999888999999999888653
No 179
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=35.06 E-value=36 Score=33.80 Aligned_cols=57 Identities=12% Similarity=-0.032 Sum_probs=41.8
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEe-------CCCChHHHHHHHHHHH
Q 040406 16 LELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV-------KPVNPDALRNVWQYAV 72 (566)
Q Consensus 16 ~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~-------KP~~~eeL~~aI~~vL 72 (566)
+++++++++..+++|||..-+-.+.+.+.+++.+||+.... .|.-..++.+-++..+
T Consensus 232 ~~~i~~v~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~ig~~~l~~~p~~~~~i~~~l~~~~ 295 (314)
T 2e6f_A 232 LANVNAFYRRCPDKLVFGCGGVYSGEDAFLHILAGASMVQVGTALQEEGPGIFTRLEDELLEIM 295 (314)
T ss_dssp HHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTCSSEEECHHHHHHCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhHhcCcHHHHHHHHHHHHHH
Confidence 68888888877789999999988999999999999876432 4544444444444444
No 180
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=34.83 E-value=91 Score=29.47 Aligned_cols=54 Identities=24% Similarity=0.212 Sum_probs=39.6
Q ss_pred EEEEeCCCCCCC---HHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeC
Q 040406 3 LVITDLHMPEMN---GLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVK 57 (566)
Q Consensus 3 LVLlDi~MPdmD---G~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~K 57 (566)
|.+.|....... -+++++++++.. ++|||+...-.+.+.+.++++.||+..+.=
T Consensus 48 i~v~d~~~~~~~~~~~~~~i~~i~~~~-~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg 104 (252)
T 1ka9_F 48 LVFLDISATHEERAILLDVVARVAERV-FIPLTVGGGVRSLEDARKLLLSGADKVSVN 104 (252)
T ss_dssp EEEEECCSSTTCHHHHHHHHHHHHTTC-CSCEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred EEEEcCCccccCccccHHHHHHHHHhC-CCCEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 445666543222 245677777664 899999999889999999999999987764
No 181
>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}
Probab=34.35 E-value=1.3e+02 Score=29.07 Aligned_cols=54 Identities=19% Similarity=0.159 Sum_probs=38.4
Q ss_pred cEEEEeCCCCC-CCH--HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEe
Q 040406 2 DLVITDLHMPE-MNG--LELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV 56 (566)
Q Consensus 2 DLVLlDi~MPd-mDG--~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~ 56 (566)
.+++.|+.-.+ +.| +++++.+++..+++|||+--+-.+.+.+.+. +.++.+.+.
T Consensus 167 eil~t~Id~DGt~~G~d~~l~~~l~~~~~~ipviasGGv~~~~Dl~~l-~~~~~gviv 223 (243)
T 4gj1_A 167 HILCTDISKDGTMQGVNVRLYKLIHEIFPNICIQASGGVASLKDLENL-KGICSGVIV 223 (243)
T ss_dssp EEEEEETTC-----CCCHHHHHHHHHHCTTSEEEEESCCCSHHHHHHT-TTTCSEEEE
T ss_pred EEEeeeecccccccCCCHHHHHHHHHhcCCCCEEEEcCCCCHHHHHHH-HccCchheh
Confidence 37888886655 233 5789999988888999988888888877654 566777654
No 182
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=33.92 E-value=66 Score=29.89 Aligned_cols=42 Identities=10% Similarity=0.135 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeC
Q 040406 15 GLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVK 57 (566)
Q Consensus 15 G~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~K 57 (566)
.+++++++++.. ++|||+..+-.+.+.+.++++.||+.++.=
T Consensus 163 ~~~~~~~~~~~~-~ipvia~GGI~~~~~~~~~~~~Gad~v~vG 204 (223)
T 1y0e_A 163 DFQFLKDVLQSV-DAKVIAEGNVITPDMYKRVMDLGVHCSVVG 204 (223)
T ss_dssp HHHHHHHHHHHC-CSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred cHHHHHHHHhhC-CCCEEEecCCCCHHHHHHHHHcCCCEEEEC
Confidence 467888888776 799999888878999999999999998764
No 183
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=33.81 E-value=63 Score=34.10 Aligned_cols=54 Identities=20% Similarity=0.221 Sum_probs=39.2
Q ss_pred CcEEEEeCCCCCCCH-HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEe
Q 040406 1 IDLVITDLHMPEMNG-LELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV 56 (566)
Q Consensus 1 pDLVLlDi~MPdmDG-~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~ 56 (566)
+|+|++|.....-.. .++++++++.+ ++|||+=+ ..+.+.+..++++||+....
T Consensus 157 vdvIvldta~G~~~~~~e~I~~ik~~~-~i~Vi~g~-V~t~e~A~~a~~aGAD~I~v 211 (400)
T 3ffs_A 157 VDVIVLDSAHGHSLNIIRTLKEIKSKM-NIDVIVGN-VVTEEATKELIENGADGIKV 211 (400)
T ss_dssp CSEEEECCSCCSBHHHHHHHHHHHTTC-CCEEEEEE-ECSHHHHHHHHHTTCSEEEE
T ss_pred CCEEEEeCCCCCcccHHHHHHHHHhcC-CCeEEEee-cCCHHHHHHHHHcCCCEEEE
Confidence 588888876543222 67888888877 78887622 24577888999999999887
No 184
>3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A*
Probab=33.65 E-value=40 Score=34.37 Aligned_cols=59 Identities=10% Similarity=-0.018 Sum_probs=43.1
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEe------C-CCChHHHHHHHHHHHHh
Q 040406 16 LELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV------K-PVNPDALRNVWQYAVTS 74 (566)
Q Consensus 16 ~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~------K-P~~~eeL~~aI~~vL~~ 74 (566)
.++++++++..+.+|||.+.+-.+.+++.+.+.+||+..-+ + |.-..++.+-|...+++
T Consensus 265 ~~~v~~~~~~~~~~pIIg~GGI~s~~Da~e~i~aGAs~Vqv~Ta~~y~GP~~~~~I~~~L~~~L~~ 330 (354)
T 3tjx_A 265 LANINAFYRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSELLGVMAK 330 (354)
T ss_dssp HHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTEEEEEECHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcEEEeCCcCCHHHHHHHHHcCCCEEEEChhhhhcCchHHHHHHHHHHHHHHH
Confidence 45667777777889999999999999999999999987433 2 54455555555555543
No 185
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=32.61 E-value=50 Score=32.39 Aligned_cols=42 Identities=17% Similarity=0.043 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeC
Q 040406 15 GLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVK 57 (566)
Q Consensus 15 G~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~K 57 (566)
+.++++++++.. ++|||+..+-.+.+.+.++++.||+.+++=
T Consensus 166 ~~~~l~~i~~~~-~iPviv~gGI~t~eda~~~~~~GAdgViVG 207 (264)
T 1xm3_A 166 NPLNLSFIIEQA-KVPVIVDAGIGSPKDAAYAMELGADGVLLN 207 (264)
T ss_dssp CHHHHHHHHHHC-SSCBEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred CHHHHHHHHhcC-CCCEEEEeCCCCHHHHHHHHHcCCCEEEEc
Confidence 478889998854 899999999888899999999999998864
No 186
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=32.55 E-value=36 Score=33.41 Aligned_cols=39 Identities=15% Similarity=0.339 Sum_probs=32.3
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEE
Q 040406 16 LELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYM 55 (566)
Q Consensus 16 ~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL 55 (566)
+++++++++.. ++|||..-+-.+.+.+.+++..||+...
T Consensus 230 ~~~i~~i~~~~-~ipvia~GGI~~~~d~~~~l~~GAd~V~ 268 (311)
T 1ep3_A 230 LKLIHQVAQDV-DIPIIGMGGVANAQDVLEMYMAGASAVA 268 (311)
T ss_dssp HHHHHHHHTTC-SSCEEECSSCCSHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHhc-CCCEEEECCcCCHHHHHHHHHcCCCEEE
Confidence 47788888765 8999988888888999999999988754
No 187
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}
Probab=32.46 E-value=43 Score=34.54 Aligned_cols=41 Identities=7% Similarity=0.108 Sum_probs=35.1
Q ss_pred HHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHhcCCcEEEe
Q 040406 16 LELQKEINEEFI-HLPVMVMSSDDRESVIMKSLASGAVFYMV 56 (566)
Q Consensus 16 ~eLLe~Lr~~~p-~IPVIvLSa~~d~~~~~~Al~aGA~dYL~ 56 (566)
++++++|++..+ ++|||...+-.+.+.+.+++.+||+....
T Consensus 262 ~~~v~~i~~~~~~~ipIIg~GGI~s~~da~~~l~aGAd~V~i 303 (345)
T 3oix_A 262 LANVHAFYKRLNPSIQIIGTGGVXTGRDAFEHILCGASMVQI 303 (345)
T ss_dssp HHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHcCCCCcEEEECCCCChHHHHHHHHhCCCEEEE
Confidence 678888888765 79999999999999999999999988543
No 188
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=32.07 E-value=2.4e+02 Score=24.06 Aligned_cols=41 Identities=15% Similarity=0.054 Sum_probs=30.6
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCC
Q 040406 16 LELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKP 58 (566)
Q Consensus 16 ~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP 58 (566)
.++++.+++. .++++++|+.........+-..|...|+...
T Consensus 42 ~~~l~~l~~~--g~~~~i~T~~~~~~~~~~l~~~gl~~~~~~~ 82 (162)
T 2p9j_A 42 GIGIKLLQKM--GITLAVISGRDSAPLITRLKELGVEEIYTGS 82 (162)
T ss_dssp HHHHHHHHTT--TCEEEEEESCCCHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHHHHC--CCEEEEEeCCCcHHHHHHHHHcCCHhhccCC
Confidence 3677777753 6799999998877666666678988888653
No 189
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=31.95 E-value=1.4e+02 Score=26.22 Aligned_cols=64 Identities=13% Similarity=0.181 Sum_probs=43.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 2 DLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
|++|+=.. .+.-|..+++.+.. .+|||+.. .....+.+..+..+++. +.+.++|.++|.+++..
T Consensus 99 di~v~ps~-~e~~~~~~~Eama~---G~PvI~~~----~~~~~e~i~~~~~g~~~-~~d~~~l~~~i~~l~~~ 162 (177)
T 2f9f_A 99 KGLLCTAK-DEDFGLTPIEAMAS---GKPVIAVN----EGGFKETVINEKTGYLV-NADVNEIIDAMKKVSKN 162 (177)
T ss_dssp SEEEECCS-SCCSCHHHHHHHHT---TCCEEEES----SHHHHHHCCBTTTEEEE-CSCHHHHHHHHHHHHHC
T ss_pred CEEEeCCC-cCCCChHHHHHHHc---CCcEEEeC----CCCHHHHhcCCCccEEe-CCCHHHHHHHHHHHHhC
Confidence 55554222 23345667776653 67887642 23445566678889999 99999999999988754
No 190
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=31.53 E-value=57 Score=30.59 Aligned_cols=55 Identities=18% Similarity=0.087 Sum_probs=38.5
Q ss_pred CcEEEEeCCCCC--------CCHHHHHHHHHHhC-CCCcEEEEecCCChHHHHHHHhcCCcEEEe
Q 040406 1 IDLVITDLHMPE--------MNGLELQKEINEEF-IHLPVMVMSSDDRESVIMKSLASGAVFYMV 56 (566)
Q Consensus 1 pDLVLlDi~MPd--------mDG~eLLe~Lr~~~-p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~ 56 (566)
.|.|+++-..|. .-|++.++.+++.. ..+|||.+-+-. .+.+.++++.||+++-.
T Consensus 108 aDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~~~iPviaiGGI~-~~nv~~~~~~Ga~gVav 171 (210)
T 3ceu_A 108 YDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKIIDSKVMALGGIN-EDNLLEIKDFGFGGAVV 171 (210)
T ss_dssp SSEEEECCCC---------CCCCHHHHHHHHHTTCSSTTEEEESSCC-TTTHHHHHHTTCSEEEE
T ss_pred CCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCEEEECCCC-HHHHHHHHHhCCCEEEE
Confidence 367776654442 23678888888764 589999887765 56677888999998654
No 191
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=30.94 E-value=55 Score=31.37 Aligned_cols=41 Identities=12% Similarity=0.222 Sum_probs=34.9
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeC
Q 040406 16 LELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVK 57 (566)
Q Consensus 16 ~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~K 57 (566)
+++++++++.. ++|||+..+-.+.+.+.++++.||++++.=
T Consensus 189 ~~~i~~l~~~~-~ipvia~GGI~~~ed~~~~~~~Gadgv~vg 229 (266)
T 2w6r_A 189 TEMIRFVRPLT-TLPIIASGGAGKMEHFLEAFLAGADAALAA 229 (266)
T ss_dssp HHHHHHHGGGC-CSCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHHc-CCCEEEeCCCCCHHHHHHHHHcCCHHHHcc
Confidence 78888888765 899999999888888888889999987664
No 192
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=30.88 E-value=64 Score=29.98 Aligned_cols=42 Identities=14% Similarity=0.194 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEe
Q 040406 14 NGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV 56 (566)
Q Consensus 14 DG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~ 56 (566)
.+++.++++++..+++||++..+-. .+.+.++++.||+.+..
T Consensus 158 ~~~~~l~~~~~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv~v 199 (227)
T 2tps_A 158 QGVSLIEAVRRQGISIPIVGIGGIT-IDNAAPVIQAGADGVSM 199 (227)
T ss_dssp CTTHHHHHHHHTTCCCCEEEESSCC-TTTSHHHHHTTCSEEEE
T ss_pred cCHHHHHHHHHhCCCCCEEEEcCCC-HHHHHHHHHcCCCEEEE
Confidence 3688899988766448998877666 66666788899998765
No 193
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=30.78 E-value=74 Score=30.30 Aligned_cols=54 Identities=11% Similarity=0.202 Sum_probs=40.2
Q ss_pred EEEEeCCCC---CCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeC
Q 040406 3 LVITDLHMP---EMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVK 57 (566)
Q Consensus 3 LVLlDi~MP---dmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~K 57 (566)
|.+.|+.-. ...-++++++|++.. .+|||+--.-.+.+.+.++++.||+..+.=
T Consensus 52 i~v~d~~~~~~~~~~~~~~i~~i~~~~-~ipvi~~Ggi~~~~~~~~~l~~Gad~V~ig 108 (247)
T 3tdn_A 52 ILLTSIDRDGTKSGYDTEMIRFVRPLT-TLPIIASGGAGKMEHFLEAFLRGADKVSIN 108 (247)
T ss_dssp EEEEETTTTTCSSCCCHHHHHHHGGGC-CSCEEEESCCCSHHHHHHHHHTTCSEECCS
T ss_pred EEEEecCcccCCCcccHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCCeeehh
Confidence 445666422 122368899998876 899999888888899999999998886643
No 194
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=30.76 E-value=51 Score=31.60 Aligned_cols=57 Identities=14% Similarity=0.025 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHhCCCCcEE--EEecCCChHHHHHHHhcCCcEEEeCCC--ChHHHHHHHHHHH
Q 040406 14 NGLELQKEINEEFIHLPVM--VMSSDDRESVIMKSLASGAVFYMVKPV--NPDALRNVWQYAV 72 (566)
Q Consensus 14 DG~eLLe~Lr~~~p~IPVI--vLSa~~d~~~~~~Al~aGA~dYL~KP~--~~eeL~~aI~~vL 72 (566)
.|.++++.||+.. +.|+. +|+.+ ....+..++++||+.+..-.. ..+.+.+.++.+.
T Consensus 49 ~g~~~v~~lr~~~-~~~~~vhlmv~d-p~~~i~~~~~aGadgv~vh~e~~~~~~~~~~~~~i~ 109 (230)
T 1tqj_A 49 IGPLIVDAIRPLT-KKTLDVHLMIVE-PEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIR 109 (230)
T ss_dssp BCHHHHHHHGGGC-CSEEEEEEESSS-GGGTHHHHHHHTCSEEEEECSTTTCTTHHHHHHHHH
T ss_pred hhHHHHHHHHhhc-CCcEEEEEEccC-HHHHHHHHHHcCCCEEEECcccccchhHHHHHHHHH
Confidence 3679999999876 56665 67743 345678899999999877655 4455666666553
No 195
>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}
Probab=30.03 E-value=55 Score=32.16 Aligned_cols=66 Identities=11% Similarity=-0.043 Sum_probs=44.5
Q ss_pred EEEEeCCCCCC---CHHHHHHHHHHhCC---CCcEEEEecCCChHHHHHHHhc--CCcEEEe--------CC-CChHHHH
Q 040406 3 LVITDLHMPEM---NGLELQKEINEEFI---HLPVMVMSSDDRESVIMKSLAS--GAVFYMV--------KP-VNPDALR 65 (566)
Q Consensus 3 LVLlDi~MPdm---DG~eLLe~Lr~~~p---~IPVIvLSa~~d~~~~~~Al~a--GA~dYL~--------KP-~~~eeL~ 65 (566)
+++.|+.-.++ --++++++|++..+ .+|||.--+-.+.+.+.++++. |+++.+. .+ +..++++
T Consensus 174 il~t~i~~dG~~~G~d~eli~~l~~~~~~~~~iPVIasGGi~s~ed~~~l~~~~~G~~gvivg~al~l~~g~~~~~~~~~ 253 (260)
T 2agk_A 174 FLIHAADVEGLCGGIDELLVSKLFEWTKDYDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTFGSSLDIFGGNLVKFEDCC 253 (260)
T ss_dssp EEEEC-------CCCCHHHHHHHHHHHTTCSSCEEEEESCCCCTHHHHHHHHHHTTCEEEECCTTBGGGTCSSBCHHHHH
T ss_pred EEEEeeccccCcCCCCHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHhcCCCCEEEeeCCHHHcCCCCCCHHHHH
Confidence 55666643221 23789999988765 8999988888888999999887 8888443 33 6666666
Q ss_pred HHH
Q 040406 66 NVW 68 (566)
Q Consensus 66 ~aI 68 (566)
+.+
T Consensus 254 ~~~ 256 (260)
T 2agk_A 254 RWN 256 (260)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 196
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=29.94 E-value=1.5e+02 Score=29.31 Aligned_cols=56 Identities=14% Similarity=0.179 Sum_probs=41.6
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEe--CCCChHHHHHHHHHHH
Q 040406 16 LELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV--KPVNPDALRNVWQYAV 72 (566)
Q Consensus 16 ~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~--KP~~~eeL~~aI~~vL 72 (566)
++.++.+++.. ++||+.-----+...+..|...||+..+. .-++.+++...++.+.
T Consensus 102 ~~~l~~ir~~v-~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~l~~~~l~~l~~~a~ 159 (272)
T 3qja_A 102 LDDLDAVRASV-SIPVLRKDFVVQPYQIHEARAHGADMLLLIVAALEQSVLVSMLDRTE 159 (272)
T ss_dssp HHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCEEECccccCHHHHHHHHHcCCCEEEEecccCCHHHHHHHHHHHH
Confidence 78888898875 89999664445555688999999999886 4556677777666543
No 197
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=29.69 E-value=1.4e+02 Score=29.00 Aligned_cols=70 Identities=13% Similarity=0.150 Sum_probs=41.3
Q ss_pred cEEEEeCCCCCCCH--HH-HHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 2 DLVITDLHMPEMNG--LE-LQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 2 DLVLlDi~MPdmDG--~e-LLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
.|||+|= ...++. .+ +++.+.+....+.+|+++.... .+..++...+..+-.+|++.+++...++..+..
T Consensus 135 ~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~--~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~ 207 (353)
T 1sxj_D 135 KIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVT--RIIDPLASQCSKFRFKALDASNAIDRLRFISEQ 207 (353)
T ss_dssp EEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG--GSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHT
T ss_pred eEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchh--hCcchhhccCceEEeCCCCHHHHHHHHHHHHHH
Confidence 3788873 222222 22 4444444334566666665433 233444444567888999999999999887653
No 198
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=29.57 E-value=76 Score=32.91 Aligned_cols=41 Identities=10% Similarity=0.186 Sum_probs=35.5
Q ss_pred HHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHhcCCcEEEe
Q 040406 16 LELQKEINEEFI-HLPVMVMSSDDRESVIMKSLASGAVFYMV 56 (566)
Q Consensus 16 ~eLLe~Lr~~~p-~IPVIvLSa~~d~~~~~~Al~aGA~dYL~ 56 (566)
+++++++++..+ ++|||...+-.+.+.+.+++.+||+....
T Consensus 285 ~~~v~~i~~~v~~~ipvI~~GGI~s~~da~~~l~~GAd~V~v 326 (367)
T 3zwt_A 285 TQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQL 326 (367)
T ss_dssp HHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 578888988765 79999999999999999999999988653
No 199
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=29.52 E-value=91 Score=28.82 Aligned_cols=42 Identities=10% Similarity=0.120 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHhcCCcEEEeC
Q 040406 15 GLELQKEINEEFI-HLPVMVMSSDDRESVIMKSLASGAVFYMVK 57 (566)
Q Consensus 15 G~eLLe~Lr~~~p-~IPVIvLSa~~d~~~~~~Al~aGA~dYL~K 57 (566)
|++.++++++..+ ++||++..+-. .+.+.++++.||+.+..=
T Consensus 134 g~~~~~~l~~~~~~~ipvia~GGI~-~~~i~~~~~~Ga~gv~vG 176 (212)
T 2v82_A 134 GPQYIKALKAVLPSDIAVFAVGGVT-PENLAQWIDAGCAGAGLG 176 (212)
T ss_dssp CHHHHHHHHTTSCTTCEEEEESSCC-TTTHHHHHHHTCSEEEEC
T ss_pred CHHHHHHHHHhccCCCeEEEeCCCC-HHHHHHHHHcCCCEEEEC
Confidence 5788888887765 68998887776 677778889999998744
No 200
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=29.09 E-value=90 Score=23.69 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=34.8
Q ss_pred hhhhchhhhhHHHHHHHHhcccchhHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 040406 143 KVVWTNSLHNRFLQAIRHITLEKAVPKKILEFMNVPGLTRENVASHLQKYR 193 (566)
Q Consensus 143 rL~WTsELHeKFLaAIgKLGlEKAIPKrILElMnvpGLTrEEVaSHLQKyr 193 (566)
+-.||.+-...++.+|.+.|..+= +.|-+.| ++=|..++..|.++|-
T Consensus 8 ~~~WT~eED~~L~~~v~~~G~~~W--~~Ia~~~--~~Rt~~qcr~r~~~~l 54 (60)
T 1x41_A 8 DPSWTAQEEMALLEAVMDCGFGNW--QDVANQM--CTKTKEECEKHYMKYF 54 (60)
T ss_dssp CSSSCHHHHHHHHHHHHHTCTTCH--HHHHHHH--TTSCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCcH--HHHHHHh--CCCCHHHHHHHHHHHc
Confidence 346999999999999999995331 2344443 6789999988888774
No 201
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=29.03 E-value=4.1e+02 Score=25.81 Aligned_cols=70 Identities=14% Similarity=0.263 Sum_probs=39.3
Q ss_pred EEEEe-CCCCCCCHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 3 LVITD-LHMPEMNGLELQKEINEEFI-HLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 3 LVLlD-i~MPdmDG~eLLe~Lr~~~p-~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
|||+| +++-..+..+.+..+-+..+ .+.+|+.|... ......+...+..+-.+|++.+++...++..++.
T Consensus 122 vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~--~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~ 193 (373)
T 1jr3_A 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP--QKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 193 (373)
T ss_dssp EEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCG--GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred EEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCCh--HhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHH
Confidence 66666 33322233333333323333 34444444432 2233455556677888999999999999887754
No 202
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=29.02 E-value=92 Score=31.48 Aligned_cols=46 Identities=17% Similarity=0.129 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeC
Q 040406 12 EMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVK 57 (566)
Q Consensus 12 dmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~K 57 (566)
+....+.+.++++..+++|||...+-.+.+.+.+++.+||+.+..=
T Consensus 235 g~~~~~~l~~v~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~iG 280 (349)
T 1p0k_A 235 GISTAASLAEIRSEFPASTMIASGGLQDALDVAKAIALGASCTGMA 280 (349)
T ss_dssp SCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred CccHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 3566788888887666899999999999999999999999987664
No 203
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=28.99 E-value=1.7e+02 Score=26.71 Aligned_cols=63 Identities=16% Similarity=0.136 Sum_probs=38.7
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHH
Q 040406 2 DLVITDLHMPEMNGLELQKEINEEFI-HLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVW 68 (566)
Q Consensus 2 DLVLlDi~MPdmDG~eLLe~Lr~~~p-~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI 68 (566)
|+|-+.+.. .++.+.++.+|+..+ +. +|-+....+.+.+..+++.||+.. .-|.-..++.+..
T Consensus 37 ~~iev~~~~--~~~~~~i~~ir~~~~~~~-~ig~~~v~~~~~~~~a~~~Gad~i-v~~~~~~~~~~~~ 100 (205)
T 1wa3_A 37 HLIEITFTV--PDADTVIKELSFLKEKGA-IIGAGTVTSVEQCRKAVESGAEFI-VSPHLDEEISQFC 100 (205)
T ss_dssp CEEEEETTS--TTHHHHHHHTHHHHHTTC-EEEEESCCSHHHHHHHHHHTCSEE-ECSSCCHHHHHHH
T ss_pred CEEEEeCCC--hhHHHHHHHHHHHCCCCc-EEEecccCCHHHHHHHHHcCCCEE-EcCCCCHHHHHHH
Confidence 444444444 366788888888764 33 333433346677888999999877 5565444444433
No 204
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=28.63 E-value=1.2e+02 Score=29.55 Aligned_cols=65 Identities=15% Similarity=0.103 Sum_probs=44.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 040406 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVT 73 (566)
Q Consensus 2 DLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~ 73 (566)
|++|+-..-.+.-|..+++.+.. .+|||+.. .....+.+..|..+++.+|.+.++|.++|.+++.
T Consensus 284 dv~v~ps~~~e~~~~~~~Ea~a~---G~PvI~~~----~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 348 (406)
T 2gek_A 284 DVYCAPHLGGESFGIVLVEAMAA---GTAVVASD----LDAFRRVLADGDAGRLVPVDDADGMAAALIGILE 348 (406)
T ss_dssp SEEEECCCSCCSSCHHHHHHHHH---TCEEEECC----CHHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEecCCCCCCCchHHHHHHHc---CCCEEEec----CCcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHc
Confidence 55555422123345677777765 67877532 2445567777888999999999999999998875
No 205
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=28.59 E-value=1e+02 Score=31.85 Aligned_cols=54 Identities=20% Similarity=0.221 Sum_probs=38.2
Q ss_pred CcEEEEeCCCCCCCH-HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEe
Q 040406 1 IDLVITDLHMPEMNG-LELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV 56 (566)
Q Consensus 1 pDLVLlDi~MPdmDG-~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~ 56 (566)
+|+|++|....+... .+.++++++.. ++|||+-. ..+.+.+.++.++||+....
T Consensus 118 ad~I~ld~a~G~~~~~~~~i~~i~~~~-~~~Vivg~-v~t~e~A~~l~~aGaD~I~V 172 (361)
T 3khj_A 118 VDVIVLDSAHGHSLNIIRTLKEIKSKM-NIDVIVGN-VVTEEATKELIENGADGIKV 172 (361)
T ss_dssp CSEEEECCSCCSBHHHHHHHHHHHHHC-CCEEEEEE-ECSHHHHHHHHHTTCSEEEE
T ss_pred cCeEEEeCCCCCcHHHHHHHHHHHHhc-CCcEEEcc-CCCHHHHHHHHHcCcCEEEE
Confidence 477888765433322 46788888877 78888622 24567788899999998776
No 206
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=28.16 E-value=89 Score=29.55 Aligned_cols=51 Identities=16% Similarity=0.186 Sum_probs=39.9
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhc-----C-CcEEEe------CCCChHHHHHH
Q 040406 16 LELQKEINEEFIHLPVMVMSSDDRESVIMKSLAS-----G-AVFYMV------KPVNPDALRNV 67 (566)
Q Consensus 16 ~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~a-----G-A~dYL~------KP~~~eeL~~a 67 (566)
+++++++++.. ++|||...+-.+.+.+.++++. | |++.+. .+++.+++++.
T Consensus 177 ~~~i~~l~~~~-~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~vgsal~~~~~~~~~~~~~ 239 (241)
T 1qo2_A 177 FSLTKKIAIEA-EVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAFLEGILTVEVMKRY 239 (241)
T ss_dssp HHHHHHHHHHH-TCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHHHhc-CCcEEEECCCCCHHHHHHHHhcccccCCeEeEEEeeHHHHcCCCCHHHHHHH
Confidence 78899998765 8999999888888888888888 9 888665 45666655543
No 207
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=28.07 E-value=83 Score=31.17 Aligned_cols=55 Identities=9% Similarity=0.041 Sum_probs=38.0
Q ss_pred HHHHHHHhCCCCcEEEEecCC------ChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 040406 18 LQKEINEEFIHLPVMVMSSDD------RESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVT 73 (566)
Q Consensus 18 LLe~Lr~~~p~IPVIvLSa~~------d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~ 73 (566)
+++.+++....+|+|+|+-.. -.....+|.++|+++.|.-.+.++|... +...++
T Consensus 78 ~~~~~~~~r~~~Pivlm~Y~N~i~~~G~e~F~~~~~~aGvdG~IipDLP~eE~~~-~~~~~~ 138 (252)
T 3tha_A 78 VFELLARIKTKKALVFMVYYNLIFSYGLEKFVKKAKSLGICALIVPELSFEESDD-LIKECE 138 (252)
T ss_dssp HHHHHHHCCCSSEEEEECCHHHHHHHCHHHHHHHHHHTTEEEEECTTCCGGGCHH-HHHHHH
T ss_pred HHHHHHHHhcCCCEEEEeccCHHHHhhHHHHHHHHHHcCCCEEEeCCCCHHHHHH-HHHHHH
Confidence 444444433458999998754 3456788999999999998888887444 443433
No 208
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=28.01 E-value=62 Score=31.97 Aligned_cols=41 Identities=10% Similarity=0.165 Sum_probs=34.1
Q ss_pred HHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHhcCCcEEEe
Q 040406 16 LELQKEINEEFI-HLPVMVMSSDDRESVIMKSLASGAVFYMV 56 (566)
Q Consensus 16 ~eLLe~Lr~~~p-~IPVIvLSa~~d~~~~~~Al~aGA~dYL~ 56 (566)
+++++++++..+ ++|||..-+-.+.+.+.+++.+||+....
T Consensus 229 ~~~i~~v~~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~v 270 (311)
T 1jub_A 229 LANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQI 270 (311)
T ss_dssp HHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 677888887654 79999999999999999999999887543
No 209
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=27.88 E-value=81 Score=30.83 Aligned_cols=55 Identities=13% Similarity=0.047 Sum_probs=44.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCC
Q 040406 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKP 58 (566)
Q Consensus 2 DLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP 58 (566)
.+|.+|. .....-.++++++++...++||++=-+-.+.+.+.++++ ||+..++=.
T Consensus 165 ~~Vyl~~-~G~~~~~~~i~~i~~~~~~~Pv~vGgGI~s~e~a~~~~~-gAd~VIVGS 219 (234)
T 2f6u_A 165 PIIYIEY-SGTYGNPELVAEVKKVLDKARLFYGGGIDSREKAREMLR-YADTIIVGN 219 (234)
T ss_dssp SEEEEEC-TTSCCCHHHHHHHHHHCSSSEEEEESCCCSHHHHHHHHH-HSSEEEECH
T ss_pred CEEEEeC-CCCcchHHHHHHHHHhCCCCCEEEEecCCCHHHHHHHHh-CCCEEEECh
Confidence 5677777 444445789999998876889988788888899988888 999988863
No 210
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=27.63 E-value=1.6e+02 Score=25.79 Aligned_cols=63 Identities=19% Similarity=0.126 Sum_probs=42.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 040406 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVT 73 (566)
Q Consensus 2 DLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~ 73 (566)
|++|+-... +.-|..+++.+.. .+|||+. .. ....+.+ .+..+++..|-+.++|.++|.+++.
T Consensus 117 d~~l~ps~~-e~~~~~~~Ea~a~---G~PvI~~-~~---~~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~~ 179 (200)
T 2bfw_A 117 DFVIIPSYF-EPFGLVALEAMCL---GAIPIAS-AV---GGLRDII-TNETGILVKAGDPGELANAILKALE 179 (200)
T ss_dssp SEEEECCSC-CSSCHHHHHHHHT---TCEEEEE-SC---HHHHHHC-CTTTCEEECTTCHHHHHHHHHHHHH
T ss_pred CEEEECCCC-CCccHHHHHHHHC---CCCEEEe-CC---CChHHHc-CCCceEEecCCCHHHHHHHHHHHHh
Confidence 566654332 3335667777654 6787654 22 2334445 6788999999999999999998875
No 211
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=27.61 E-value=1.5e+02 Score=30.37 Aligned_cols=71 Identities=21% Similarity=0.204 Sum_probs=48.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHh--C--CCCcEEEEecCCChHHHHHHHhcCCcE-EEeCCCChHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEE--F--IHLPVMVMSSDDRESVIMKSLASGAVF-YMVKPVNPDALRNVWQYA 71 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~--~--p~IPVIvLSa~~d~~~~~~Al~aGA~d-YL~KP~~~eeL~~aI~~v 71 (566)
+|.|++|+.-.-.+--.+.+.|+.. . ...+++|=+...+...+..+++.|++. .|.|--+.+++..+++.+
T Consensus 64 aD~vilDlEha~~~~e~~~~~l~a~~~~~~~~~~~~VRv~~~~~~di~~~LdaGa~gImlP~V~saee~~~~~~~~ 139 (339)
T 1izc_A 64 PDFVWIDVEHGMFNRLELHDAIHAAQHHSEGRSLVIVRVPKHDEVSLSTALDAGAAGIVIPHVETVEEVREFVKEM 139 (339)
T ss_dssp CSEEEEETTTSCCCHHHHHHHHHHHHHHTTTCSEEEEECCTTCHHHHHHHHHHTCSEEEETTCCCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHhhhcCCCCCeEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHHh
Confidence 5899999976555544444444432 1 126777777777788888999999987 444445788888776553
No 212
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=27.25 E-value=1.1e+02 Score=31.55 Aligned_cols=55 Identities=18% Similarity=0.253 Sum_probs=37.5
Q ss_pred CcEEEEeCCCCCC-CHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEe
Q 040406 1 IDLVITDLHMPEM-NGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV 56 (566)
Q Consensus 1 pDLVLlDi~MPdm-DG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~ 56 (566)
+|+|.++....+. .-+++++++++..+++||++-. ..+.+.+.++.+.||+....
T Consensus 166 ~d~i~i~~~~g~~~~~~e~i~~ir~~~~~~pviv~~-v~~~~~a~~a~~~Gad~I~v 221 (404)
T 1eep_A 166 VDILVIDSAHGHSTRIIELIKKIKTKYPNLDLIAGN-IVTKEAALDLISVGADCLKV 221 (404)
T ss_dssp CSEEEECCSCCSSHHHHHHHHHHHHHCTTCEEEEEE-ECSHHHHHHHHTTTCSEEEE
T ss_pred CCEEEEeCCCCChHHHHHHHHHHHHHCCCCeEEEcC-CCcHHHHHHHHhcCCCEEEE
Confidence 3566664332211 2467888889888788988622 23467888899999998877
No 213
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=27.18 E-value=1.1e+02 Score=33.93 Aligned_cols=54 Identities=19% Similarity=0.183 Sum_probs=40.5
Q ss_pred CcEEEEeCCCCCCC-HHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEE
Q 040406 1 IDLVITDLHMPEMN-GLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYM 55 (566)
Q Consensus 1 pDLVLlDi~MPdmD-G~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL 55 (566)
.|+|++|.---... -+++++.|++.+|+++||+=.- .+.+.+...+++||+...
T Consensus 294 vD~iviD~ahGhs~~v~~~i~~ik~~~p~~~viaGNV-aT~e~a~~Li~aGAD~vk 348 (556)
T 4af0_A 294 LDVVVLDSSQGNSVYQIEFIKWIKQTYPKIDVIAGNV-VTREQAAQLIAAGADGLR 348 (556)
T ss_dssp CCEEEECCSCCCSHHHHHHHHHHHHHCTTSEEEEEEE-CSHHHHHHHHHHTCSEEE
T ss_pred CcEEEEeccccccHHHHHHHHHHHhhCCcceEEeccc-cCHHHHHHHHHcCCCEEe
Confidence 48999998765433 3788999999999998876433 445667778899998864
No 214
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=26.79 E-value=84 Score=29.52 Aligned_cols=41 Identities=12% Similarity=0.054 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeC
Q 040406 15 GLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVK 57 (566)
Q Consensus 15 G~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~K 57 (566)
.+++++++++. ++||++..+-.+.+.+.++++.||+.++.=
T Consensus 175 ~~~~i~~~~~~--~ipvia~GGI~s~~~~~~~~~~Gad~v~vG 215 (234)
T 1yxy_A 175 DVALIEALCKA--GIAVIAEGKIHSPEEAKKINDLGVAGIVVG 215 (234)
T ss_dssp CHHHHHHHHHT--TCCEEEESCCCSHHHHHHHHTTCCSEEEEC
T ss_pred CHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHCCCCEEEEc
Confidence 36888888876 799999888888999999999999997763
No 215
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=26.72 E-value=1.9e+02 Score=27.39 Aligned_cols=55 Identities=11% Similarity=0.079 Sum_probs=37.9
Q ss_pred EeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCCh
Q 040406 6 TDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNP 61 (566)
Q Consensus 6 lDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~ 61 (566)
+.+.+-..++.+.++.+++.++++-+-.=| --+.+.+..|++.||+..+.--.+.
T Consensus 45 iel~~k~~~~~~~i~~l~~~~~~~~vgagt-vi~~d~~~~A~~aGAd~v~~p~~d~ 99 (214)
T 1wbh_A 45 LNVTLRTECAVDAIRAIAKEVPEAIVGAGT-VLNPQQLAEVTEAGAQFAISPGLTE 99 (214)
T ss_dssp EEEESCSTTHHHHHHHHHHHCTTSEEEEES-CCSHHHHHHHHHHTCSCEEESSCCH
T ss_pred EEEeCCChhHHHHHHHHHHHCcCCEEeeCE-EEEHHHHHHHHHcCCCEEEcCCCCH
Confidence 344556678899999999988765443323 4455788899999998766543433
No 216
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=26.54 E-value=49 Score=33.70 Aligned_cols=60 Identities=22% Similarity=0.135 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhCCCCcEEEEe--cCCChHHHHHHHhcCCcEEEeC-----CCChHHHHHHHHHHHHhh
Q 040406 15 GLELQKEINEEFIHLPVMVMS--SDDRESVIMKSLASGAVFYMVK-----PVNPDALRNVWQYAVTSK 75 (566)
Q Consensus 15 G~eLLe~Lr~~~p~IPVIvLS--a~~d~~~~~~Al~aGA~dYL~K-----P~~~eeL~~aI~~vL~~~ 75 (566)
.++++++|++. ..+|||++. +-.+.+.+.++++.|+++.++= --++....+.+..++...
T Consensus 186 d~elI~~Ike~-~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~Akafv~Av~~~ 252 (291)
T 3o07_A 186 PVSLLKDVLEK-GKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVEATTHF 252 (291)
T ss_dssp CHHHHHHHHHH-TSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHc-cCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHHHHHHHHHHhc
Confidence 37899999887 589999873 3346888999999999997653 345677777776666544
No 217
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=26.34 E-value=1.5e+02 Score=29.84 Aligned_cols=51 Identities=20% Similarity=0.196 Sum_probs=39.0
Q ss_pred HHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHH
Q 040406 17 ELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQ 69 (566)
Q Consensus 17 eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~ 69 (566)
+.++.+++..++.+|++-+. ..+.+.++++.||+...+-++++++|+.+++
T Consensus 197 ~ai~~~r~~~~~~kI~vev~--tlee~~eA~~aGaD~I~ld~~~~e~l~~~v~ 247 (296)
T 1qap_A 197 QAVEKAFWLHPDVPVEVEVE--NLDELDDALKAGADIIMLDNFNTDQMREAVK 247 (296)
T ss_dssp HHHHHHHHHSTTSCEEEEES--SHHHHHHHHHTTCSEEEESSCCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcEEEEeC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Confidence 45667777777666665443 3466888999999999999999999988876
No 218
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=26.17 E-value=1.6e+02 Score=25.67 Aligned_cols=71 Identities=10% Similarity=-0.046 Sum_probs=41.5
Q ss_pred CcEEEEeCCCCC-CC-HHHHHHHHHHhCC-CCcEEEEecC----CChH-HHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 040406 1 IDLVITDLHMPE-MN-GLELQKEINEEFI-HLPVMVMSSD----DRES-VIMKSLASGAVFYMVKPVNPDALRNVWQYA 71 (566)
Q Consensus 1 pDLVLlDi~MPd-mD-G~eLLe~Lr~~~p-~IPVIvLSa~----~d~~-~~~~Al~aGA~dYL~KP~~~eeL~~aI~~v 71 (566)
+|+|.+-..+.. +. --++++.|++... +++|++=-.. .+.. ....+.+.|++.|+.---+..++...+...
T Consensus 55 ~d~v~lS~~~~~~~~~~~~~i~~l~~~g~~~i~v~vGG~~~~~~~~~~~~~~~~~~~G~d~~~~~g~~~~~~~~~l~~~ 133 (137)
T 1ccw_A 55 ADAILVSSLYGQGEIDCKGLRQKCDEAGLEGILLYVGGNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKKD 133 (137)
T ss_dssp CSEEEEEECSSTHHHHHTTHHHHHHHTTCTTCEEEEEESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHHH
T ss_pred CCEEEEEecCcCcHHHHHHHHHHHHhcCCCCCEEEEECCCcCchHhhhhhHHHHHHCCCCEEECCCCCHHHHHHHHHHH
Confidence 467777666643 11 2346677777644 5666543322 1111 244577899999887666677766666544
No 219
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=26.17 E-value=26 Score=28.43 Aligned_cols=41 Identities=15% Similarity=0.033 Sum_probs=32.9
Q ss_pred ccCCchHHHHHHhh-hccCCchhHHHHhhhcccccccccccc
Q 040406 89 ANGSSAEKISFLHD-IVSGSSMIEEKESKTNSKRKASKRRKD 129 (566)
Q Consensus 89 ~~~lS~re~evL~~-IaqGsS~~EIae~k~IS~~k~~~~~k~ 129 (566)
...++.++++++.. +..|.+..+|+....++..+++.+...
T Consensus 35 l~~L~~~~r~vl~l~~~~g~s~~eIA~~lgis~~tV~~~l~r 76 (92)
T 3hug_A 35 LAQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHY 76 (92)
T ss_dssp HHTSCHHHHHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 35678888888876 789999999999999998877665433
No 220
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=26.11 E-value=2.1e+02 Score=27.33 Aligned_cols=54 Identities=9% Similarity=0.098 Sum_probs=37.5
Q ss_pred EeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCC
Q 040406 6 TDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60 (566)
Q Consensus 6 lDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~ 60 (566)
+.+.+-..++.+.++++++.++++-|-.=| --+.+.+..|++.||+..+.--.+
T Consensus 46 iel~~k~~~~~~~i~~l~~~~~~l~vgaGt-vl~~d~~~~A~~aGAd~v~~p~~d 99 (224)
T 1vhc_A 46 AEITFRSEAAADAIRLLRANRPDFLIAAGT-VLTAEQVVLAKSSGADFVVTPGLN 99 (224)
T ss_dssp EEEETTSTTHHHHHHHHHHHCTTCEEEEES-CCSHHHHHHHHHHTCSEEECSSCC
T ss_pred EEEeccCchHHHHHHHHHHhCcCcEEeeCc-EeeHHHHHHHHHCCCCEEEECCCC
Confidence 444556678899999999988765443333 235678889999999877654333
No 221
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=26.02 E-value=74 Score=30.38 Aligned_cols=46 Identities=20% Similarity=0.368 Sum_probs=37.4
Q ss_pred CCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeC
Q 040406 10 MPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVK 57 (566)
Q Consensus 10 MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~K 57 (566)
||+.-- ++++++++.. ++|||+=---.+.+.+..|+++||+..-+-
T Consensus 134 LPGi~p-~iI~~i~~~~-~~PiIaGGlI~~~edv~~al~aGA~aVsTs 179 (192)
T 3kts_A 134 LPGIIP-EQVQKMTQKL-HIPVIAGGLIETSEQVNQVIASGAIAVTTS 179 (192)
T ss_dssp ECTTCH-HHHHHHHHHH-CCCEEEESSCCSHHHHHHHHTTTEEEEEEC
T ss_pred CCchhH-HHHHHHHHhc-CCCEEEECCcCCHHHHHHHHHcCCeEEEeC
Confidence 577543 7889998875 889998777788999999999999987653
No 222
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=25.92 E-value=1.6e+02 Score=29.55 Aligned_cols=55 Identities=16% Similarity=0.199 Sum_probs=41.0
Q ss_pred CcEEEEeCCC-----CCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEe
Q 040406 1 IDLVITDLHM-----PEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV 56 (566)
Q Consensus 1 pDLVLlDi~M-----PdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~ 56 (566)
+|.|+++-.- .....+++++++++.. ++|||+..+-.+.+.+.+++..||+....
T Consensus 131 aD~i~v~g~~~GG~~g~~~~~~ll~~i~~~~-~iPViaaGGI~~~~~~~~al~~GAdgV~v 190 (332)
T 2z6i_A 131 ADAVIAEGMEAGGHIGKLTTMTLVRQVATAI-SIPVIAAGGIADGEGAAAGFMLGAEAVQV 190 (332)
T ss_dssp CSCEEEECTTSSEECCSSCHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred CCEEEEECCCCCCCCCCccHHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEe
Confidence 3666665221 1235688999998876 79999988888888999999999988654
No 223
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=25.78 E-value=1.3e+02 Score=31.94 Aligned_cols=55 Identities=18% Similarity=0.209 Sum_probs=40.1
Q ss_pred CcEEEEeCCCCCC-CHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEe
Q 040406 1 IDLVITDLHMPEM-NGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV 56 (566)
Q Consensus 1 pDLVLlDi~MPdm-DG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~ 56 (566)
+|+|.++...... .-++.++++++..+++||++=. ..+.+.+..+.++|++....
T Consensus 250 vd~v~i~~~~G~~~~~~e~i~~i~~~~p~~pvi~g~-~~t~e~a~~l~~~G~d~I~v 305 (494)
T 1vrd_A 250 VDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAGN-VATPEGTEALIKAGADAVKV 305 (494)
T ss_dssp CSEEEECCSCCSSHHHHHHHHHHHHHCTTSCEEEEE-ECSHHHHHHHHHTTCSEEEE
T ss_pred CCEEEEEecCCchHHHHHHHHHHHHHCCCceEEeCC-cCCHHHHHHHHHcCCCEEEE
Confidence 4677777654221 2578899999998889988733 34566778889999998876
No 224
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=25.52 E-value=75 Score=29.20 Aligned_cols=68 Identities=16% Similarity=0.306 Sum_probs=43.8
Q ss_pred cEEEEeCCCCC-CCHHHHHHHHHHhCCCCcEEEEecCC---ChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 040406 2 DLVITDLHMPE-MNGLELQKEINEEFIHLPVMVMSSDD---RESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVT 73 (566)
Q Consensus 2 DLVLlDi~MPd-mDG~eLLe~Lr~~~p~IPVIvLSa~~---d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~ 73 (566)
|+||.++.-|+ ..++|+--... ...||+++.... ....+.+....| ..|..+.+..++|..+|.+.+.
T Consensus 70 D~vvA~l~~~d~Gt~~EiG~A~a---lgkPV~~l~~~~~~~~ls~mi~G~~~~-~~~~~~~Y~~~el~~il~~f~~ 141 (152)
T 4fyk_A 70 DVVVAEVTQPSLGVGYELGRAVA---LGKPILCLFRPQSGRVLSAMIRGAADG-SRFQVWDYAEGEVETMLDRYFE 141 (152)
T ss_dssp SEEEEECSSCCHHHHHHHHHHHH---TTCCEEEEECGGGSCCCCHHHHHHCCS-SSEEEEECCTTCHHHHHHHHHC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHH---cCCeEEEEEeCCccchhHHHHcCCCCC-CeEEEEEecHHHHHHHHHHHHH
Confidence 78898877554 33556554443 377999987643 223344444333 4577888877899988888764
No 225
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=25.50 E-value=80 Score=32.64 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=29.2
Q ss_pred hHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 040406 40 ESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVT 73 (566)
Q Consensus 40 ~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~ 73 (566)
.+.+.+|+++|..-++-||++.+|..++++.+-+
T Consensus 84 ~~~a~~al~aGkhVl~EKPl~~~ea~~l~~~A~~ 117 (372)
T 4gmf_A 84 TQLARHFLARGVHVIQEHPLHPDDISSLQTLAQE 117 (372)
T ss_dssp HHHHHHHHHTTCEEEEESCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEEecCCCHHHHHHHHHHHHH
Confidence 4678899999999999999999999888876644
No 226
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=25.40 E-value=1.8e+02 Score=28.65 Aligned_cols=48 Identities=17% Similarity=0.165 Sum_probs=35.4
Q ss_pred hCCCCcEEEEecCC--ChHHHHHHHhcCCcEEEeCCC--ChHHHHHHHHHHH
Q 040406 25 EFIHLPVMVMSSDD--RESVIMKSLASGAVFYMVKPV--NPDALRNVWQYAV 72 (566)
Q Consensus 25 ~~p~IPVIvLSa~~--d~~~~~~Al~aGA~dYL~KP~--~~eeL~~aI~~vL 72 (566)
..+++-+|+++... ..+.+.+|+++|..-++-||+ +.++..++++.+-
T Consensus 69 ~~~~vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~ 120 (312)
T 3o9z_A 69 RGEGVDYLSIASPNHLHYPQIRMALRLGANALSEKPLVLWPEEIARLKELEA 120 (312)
T ss_dssp TTCCCSEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSCHHHHHHHHHHHH
T ss_pred cCCCCcEEEECCCchhhHHHHHHHHHCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34566666665544 356688999999999999995 5678888777654
No 227
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=25.40 E-value=1.3e+02 Score=30.24 Aligned_cols=65 Identities=20% Similarity=0.200 Sum_probs=38.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecC---C--ChHHHHHHHhcCCcEEEe-CCCChHHHHHHHHHHHHh
Q 040406 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSD---D--RESVIMKSLASGAVFYMV-KPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 2 DLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~---~--d~~~~~~Al~aGA~dYL~-KP~~~eeL~~aI~~vL~~ 74 (566)
||||+- + -+..+.+.+.. .+|+|++.-. + ....+....+.|+.-+|. +.++.++|.+.|..++..
T Consensus 254 DlvI~r---a--G~~Tv~E~~a~---G~P~Ilip~p~~~~~~Q~~NA~~l~~~G~a~~l~~~~~~~~~L~~~i~~ll~d 324 (365)
T 3s2u_A 254 DLVICR---A--GALTVSELTAA---GLPAFLVPLPHAIDDHQTRNAEFLVRSGAGRLLPQKSTGAAELAAQLSEVLMH 324 (365)
T ss_dssp SEEEEC---C--CHHHHHHHHHH---TCCEEECC-----CCHHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHC
T ss_pred eEEEec---C--CcchHHHHHHh---CCCeEEeccCCCCCcHHHHHHHHHHHCCCEEEeecCCCCHHHHHHHHHHHHCC
Confidence 666653 1 23445555443 6787775321 2 223345566788866665 346789999999988753
No 228
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=25.26 E-value=2.8e+02 Score=26.95 Aligned_cols=55 Identities=7% Similarity=-0.011 Sum_probs=41.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCC
Q 040406 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKP 58 (566)
Q Consensus 2 DLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP 58 (566)
++|-+|. .......++++++++...++||++=-+-.+.+.+.+++ .||+..++-.
T Consensus 155 ~~VYld~-sG~~~~~~~i~~i~~~~~~~Pv~vGGGI~t~e~a~~~~-~gAD~VVVGS 209 (228)
T 3vzx_A 155 PIFYLEY-SGVLGDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYA-EHADVIVVGN 209 (228)
T ss_dssp SEEEEEC-TTSCCCHHHHHHHHHHCSSSEEEEESSCCSHHHHHHHH-TTCSEEEECT
T ss_pred CEEEecC-CCCcCCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHH-hCCCEEEECh
Confidence 5667776 22222488999999886578999877778888888877 7999998865
No 229
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=24.96 E-value=2.1e+02 Score=24.74 Aligned_cols=56 Identities=9% Similarity=0.086 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCC--CChHHHHHHHHHHHH
Q 040406 15 GLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKP--VNPDALRNVWQYAVT 73 (566)
Q Consensus 15 G~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP--~~~eeL~~aI~~vL~ 73 (566)
+..+++.+.. .+|+|++.-..+.....+.+...-.+++..+ ++.++|.++|.+++.
T Consensus 96 ~~t~~Ea~~~---G~P~i~~p~~~~Q~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~ 153 (170)
T 2o6l_A 96 ANGIYEAIYH---GIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSSTDLLNALKRVIN 153 (170)
T ss_dssp HHHHHHHHHH---TCCEEECCCSTTHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHc---CCCEEeccchhhHHHHHHHHHHcCCeEEeccccCCHHHHHHHHHHHHc
Confidence 3445555543 6788877655443333333433334555554 477888888887764
No 230
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*
Probab=24.43 E-value=51 Score=35.04 Aligned_cols=41 Identities=10% Similarity=0.109 Sum_probs=34.5
Q ss_pred HHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHhcCCcEEEe
Q 040406 16 LELQKEINEEFI-HLPVMVMSSDDRESVIMKSLASGAVFYMV 56 (566)
Q Consensus 16 ~eLLe~Lr~~~p-~IPVIvLSa~~d~~~~~~Al~aGA~dYL~ 56 (566)
+++++++++... ++|||...+-.+.+.+.+++.+||+....
T Consensus 332 l~~I~~v~~~v~~~iPIIg~GGI~s~eDa~e~l~aGAd~VqI 373 (415)
T 3i65_A 332 TKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQL 373 (415)
T ss_dssp HHHHHHHHHHTTTCSCEEECSSCCSHHHHHHHHHHTEEEEEE
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 478888887754 79999999999999999999999977543
No 231
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=24.11 E-value=4.7e+02 Score=27.59 Aligned_cols=71 Identities=7% Similarity=0.153 Sum_probs=44.2
Q ss_pred cEEEEeC--CCCC--CCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 2 DLVITDL--HMPE--MNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 2 DLVLlDi--~MPd--mDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
.|||+|= .|.. ..++..+..+.+. ..+|||+++........ ..+..-+..+-.+|.+.+++...+..++..
T Consensus 150 ~vliIDEid~l~~~~~~~l~~L~~~l~~-~~~~iIli~~~~~~~~l-~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~ 224 (516)
T 1sxj_A 150 FVIIMDEVDGMSGGDRGGVGQLAQFCRK-TSTPLILICNERNLPKM-RPFDRVCLDIQFRRPDANSIKSRLMTIAIR 224 (516)
T ss_dssp EEEEECSGGGCCTTSTTHHHHHHHHHHH-CSSCEEEEESCTTSSTT-GGGTTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCccchhhHHHHHHHHHHHHh-cCCCEEEEEcCCCCccc-hhhHhceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 4677773 2332 3344544444444 36789998876542222 234445667888899999999999877654
No 232
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=23.97 E-value=3.7e+02 Score=23.61 Aligned_cols=43 Identities=14% Similarity=0.142 Sum_probs=31.7
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCC
Q 040406 16 LELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60 (566)
Q Consensus 16 ~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~ 60 (566)
.++++++++. .++++++|+.........+-..|...|+....+
T Consensus 41 ~~~l~~L~~~--G~~~~i~Tg~~~~~~~~~~~~lgl~~~~~~~k~ 83 (180)
T 1k1e_A 41 GLGIKMLMDA--DIQVAVLSGRDSPILRRRIADLGIKLFFLGKLE 83 (180)
T ss_dssp HHHHHHHHHT--TCEEEEEESCCCHHHHHHHHHHTCCEEEESCSC
T ss_pred HHHHHHHHHC--CCeEEEEeCCCcHHHHHHHHHcCCceeecCCCC
Confidence 4677777764 689999999887766666667898888865433
No 233
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=23.96 E-value=1.6e+02 Score=28.99 Aligned_cols=63 Identities=19% Similarity=0.120 Sum_probs=42.7
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 040406 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVT 73 (566)
Q Consensus 2 DLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~ 73 (566)
|++|+-... +.-|..+++.+.. .+|||+. .. ....+.++.| .+++..|.+.++|.++|.+++.
T Consensus 332 dv~v~ps~~-e~~~~~~~EAma~---G~Pvi~s-~~---~~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll~ 394 (439)
T 3fro_A 332 DFVIIPSYF-EPFGLVALEAMCL---GAIPIAS-AV---GGLRDIITNE-TGILVKAGDPGELANAILKALE 394 (439)
T ss_dssp SEEEECBSC-CSSCHHHHHHHHT---TCEEEEE-SS---THHHHHCCTT-TCEEECTTCHHHHHHHHHHHHH
T ss_pred CEEEeCCCC-CCccHHHHHHHHC---CCCeEEc-CC---CCcceeEEcC-ceEEeCCCCHHHHHHHHHHHHh
Confidence 455543332 3445667777653 6788763 32 2334455566 8999999999999999999986
No 234
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=23.79 E-value=2e+02 Score=29.28 Aligned_cols=42 Identities=26% Similarity=0.278 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEe
Q 040406 14 NGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV 56 (566)
Q Consensus 14 DG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~ 56 (566)
+.+++++++++.. ++|||+..+-.+.+.+.+++..||+.+..
T Consensus 195 ~~~~~l~~i~~~~-~iPViaaGGI~~~~~~~~~l~~GAd~V~v 236 (369)
T 3bw2_A 195 GLLSLLAQVREAV-DIPVVAAGGIMRGGQIAAVLAAGADAAQL 236 (369)
T ss_dssp CHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred cHHHHHHHHHHhc-CceEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 3488999998775 89999888877888999999999988664
No 235
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=23.73 E-value=86 Score=31.12 Aligned_cols=42 Identities=12% Similarity=0.033 Sum_probs=35.3
Q ss_pred HHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHhcCCcEEEeC
Q 040406 16 LELQKEINEEFI-HLPVMVMSSDDRESVIMKSLASGAVFYMVK 57 (566)
Q Consensus 16 ~eLLe~Lr~~~p-~IPVIvLSa~~d~~~~~~Al~aGA~dYL~K 57 (566)
++.+++|....+ ++|||..++-.+.+.+.++.+.||+++++=
T Consensus 200 l~~~~~l~~~v~~~~pvVaegGI~t~edv~~l~~~GadgvlVG 242 (272)
T 3qja_A 200 RDCFARIAPGLPSSVIRIAESGVRGTADLLAYAGAGADAVLVG 242 (272)
T ss_dssp TTHHHHHGGGSCTTSEEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHhCcccCEEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 566777777665 789999999888999999999999999874
No 236
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=23.69 E-value=2.6e+02 Score=23.44 Aligned_cols=48 Identities=13% Similarity=0.257 Sum_probs=36.1
Q ss_pred CCcEEEEecCCCh----HHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhh
Q 040406 28 HLPVMVMSSDDRE----SVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSK 75 (566)
Q Consensus 28 ~IPVIvLSa~~d~----~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~ 75 (566)
..|++++...... +...+|.+.|+..-+.|.-++++|..+++..+...
T Consensus 51 gkplvvfvngasqndvnefqneakkegvsydvlkstdpeeltqrvreflkta 102 (112)
T 2lnd_A 51 GKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKSTDPEELTQRVREFLKTA 102 (112)
T ss_dssp CSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEECCCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEecCcccccHHHHHHHHHhcCcchhhhccCCHHHHHHHHHHHHHhc
Confidence 4566665544433 33456788999999999999999999999998654
No 237
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=23.61 E-value=2.4e+02 Score=27.45 Aligned_cols=71 Identities=10% Similarity=0.171 Sum_probs=44.4
Q ss_pred CcEEEEeCCCCCCCH--HH-HHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHh
Q 040406 1 IDLVITDLHMPEMNG--LE-LQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 1 pDLVLlDi~MPdmDG--~e-LLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~ 74 (566)
+.|||+|=-.- +|. .+ +++.+.+....+.+|++|..... +...+...+..+-.+|.+.+++...++.++..
T Consensus 135 ~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~--l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~ 208 (354)
T 1sxj_E 135 YKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSP--IIAPIKSQCLLIRCPAPSDSEISTILSDVVTN 208 (354)
T ss_dssp CEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCS--SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHH--HHHHHHhhceEEecCCcCHHHHHHHHHHHHHH
Confidence 35788874222 443 22 34444443345666666654332 33456666788889999999999999887754
No 238
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=23.54 E-value=1.4e+02 Score=29.92 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=41.3
Q ss_pred CcEEEEeCCCC-----CCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEe
Q 040406 1 IDLVITDLHMP-----EMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV 56 (566)
Q Consensus 1 pDLVLlDi~MP-----dmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~ 56 (566)
+|.|+++-.-. ....++++.++++.. ++|||+-.+-.+.+.+.+++..||+....
T Consensus 145 aD~i~v~g~~~GG~~G~~~~~~ll~~i~~~~-~iPviaaGGI~~~~dv~~al~~GA~gV~v 204 (326)
T 3bo9_A 145 ADAVIAEGMESGGHIGEVTTFVLVNKVSRSV-NIPVIAAGGIADGRGMAAAFALGAEAVQM 204 (326)
T ss_dssp CSCEEEECTTSSEECCSSCHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred CCEEEEECCCCCccCCCccHHHHHHHHHHHc-CCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 35666653211 235688899888765 79999988888888999999999998665
No 239
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=23.49 E-value=2e+02 Score=27.81 Aligned_cols=58 Identities=14% Similarity=0.259 Sum_probs=38.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 040406 2 DLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVT 73 (566)
Q Consensus 2 DLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~ 73 (566)
|++|+.- |.-+++.+.. .+|||+....... .+.++.| .+++..+ +.++|.++|.+++.
T Consensus 284 d~~v~~s------g~~~lEA~a~---G~Pvi~~~~~~~~---~e~v~~g-~g~~v~~-d~~~la~~i~~ll~ 341 (375)
T 3beo_A 284 YLMLTDS------GGVQEEAPSL---GVPVLVLRDTTER---PEGIEAG-TLKLAGT-DEETIFSLADELLS 341 (375)
T ss_dssp SEEEECC------HHHHHHHHHH---TCCEEECSSCCSC---HHHHHTT-SEEECCS-CHHHHHHHHHHHHH
T ss_pred cEEEECC------CChHHHHHhc---CCCEEEecCCCCC---ceeecCC-ceEEcCC-CHHHHHHHHHHHHh
Confidence 5666542 4446666654 6788876221222 2346678 8899877 99999999988874
No 240
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=23.31 E-value=1.1e+02 Score=28.82 Aligned_cols=41 Identities=20% Similarity=0.227 Sum_probs=33.2
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeC
Q 040406 16 LELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVK 57 (566)
Q Consensus 16 ~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~K 57 (566)
+++++++++.. ++||++...-.+.+.+.++++.||+..+.-
T Consensus 63 ~~~i~~i~~~~-~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg 103 (253)
T 1thf_D 63 LELVEKVAEQI-DIPFTVGGGIHDFETASELILRGADKVSIN 103 (253)
T ss_dssp HHHHHHHHTTC-CSCEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 56677777654 799999888888888999999999987764
No 241
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=23.27 E-value=1.6e+02 Score=27.14 Aligned_cols=54 Identities=20% Similarity=0.257 Sum_probs=34.1
Q ss_pred cEEEEeCCCCCCCH-------HHHHHHHHHhC----CCCcEEEEecCCChHHHHHHHhcCCcEEEe
Q 040406 2 DLVITDLHMPEMNG-------LELQKEINEEF----IHLPVMVMSSDDRESVIMKSLASGAVFYMV 56 (566)
Q Consensus 2 DLVLlDi~MPdmDG-------~eLLe~Lr~~~----p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~ 56 (566)
|.|+++...|+.+| ++.++++++.. .++||++.-+-. .+.+.++++.||+.++.
T Consensus 133 d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~-~~~~~~~~~~Gad~vvv 197 (220)
T 2fli_A 133 DQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVD-NKTIRACYEAGANVFVA 197 (220)
T ss_dssp SEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCC-TTTHHHHHHHTCCEEEE
T ss_pred CEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEEECcCC-HHHHHHHHHcCCCEEEE
Confidence 67777766665444 34455665533 257766544444 56666788889998665
No 242
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=23.15 E-value=1.3e+02 Score=29.05 Aligned_cols=42 Identities=17% Similarity=0.060 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeC
Q 040406 15 GLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVK 57 (566)
Q Consensus 15 G~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~K 57 (566)
..++++++++.. ++||++-.+-.+.+.+.++++.||+.++.=
T Consensus 189 ~~~~i~~v~~~~-~~pI~vgGGI~~~e~~~~~~~~GAdgvvVG 230 (262)
T 1rd5_A 189 VESLIQEVKKVT-NKPVAVGFGISKPEHVKQIAQWGADGVIIG 230 (262)
T ss_dssp HHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHhhc-CCeEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 557888888875 799999888888899999999999998874
No 243
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=22.92 E-value=1.2e+02 Score=28.09 Aligned_cols=41 Identities=20% Similarity=0.147 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEe
Q 040406 15 GLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV 56 (566)
Q Consensus 15 G~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~ 56 (566)
.+++++++++.. ++||++.....+.+.+.++++.||+.+..
T Consensus 65 ~~~~i~~i~~~~-~ipvi~~g~i~~~~~~~~~~~~Gad~V~i 105 (253)
T 1h5y_A 65 FIDSVKRVAEAV-SIPVLVGGGVRSLEDATTLFRAGADKVSV 105 (253)
T ss_dssp HHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred cHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 467888888776 79999887777888888999999988774
No 244
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=22.89 E-value=77 Score=30.01 Aligned_cols=57 Identities=14% Similarity=0.085 Sum_probs=38.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVT 73 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~ 73 (566)
+|+||+|+.++...+ ...+|.++...... ....+...++.||+...+|...+.+++.
T Consensus 49 ~~~ii~d~~~~~~~~------------~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 105 (254)
T 2ayx_A 49 EDVLITDEVVSKKWQ------------GRAVVTFCRRHIGI----PLEKAPGEWVHSVAAPHELPALLARIYL 105 (254)
T ss_dssp TCEEEEESSCSCCCC------------SSEEEEECSSCCCS----CCTTSTTEEEECSSCCSHHHHHHHHHHT
T ss_pred CcEEEEcCCCccccc------------cceEEEEecccCCC----cccccCCceeccccchHHHHHHHHHHhh
Confidence 589999999987643 12356666543211 1123556899999999999888887653
No 245
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=22.41 E-value=1.4e+02 Score=29.96 Aligned_cols=58 Identities=10% Similarity=0.220 Sum_probs=39.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCCCC
Q 040406 1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVN 60 (566)
Q Consensus 1 pDLVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP~~ 60 (566)
||+||+=---|...|-.-.+++-... ++|.|+++...... ..++++..-.+||.-+.+
T Consensus 65 pDfvI~isPN~a~PGP~~ARE~l~~~-~iP~IvI~D~p~~K-~kd~l~~~g~GYIivk~D 122 (283)
T 1qv9_A 65 PDFIVYGGPNPAAPGPSKAREMLADS-EYPAVIIGDAPGLK-VKDEMEEQGLGYILVKPD 122 (283)
T ss_dssp CSEEEEECSCTTSHHHHHHHHHHHTS-SSCEEEEEEGGGGG-GHHHHHHTTCEEEEETTS
T ss_pred CCEEEEECCCCCCCCchHHHHHHHhC-CCCEEEEcCCcchh-hHHHHHhcCCcEEEEecC
Confidence 57777655555667777666665544 89999999987666 457776666677665443
No 246
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=22.25 E-value=1.8e+02 Score=29.35 Aligned_cols=57 Identities=18% Similarity=0.136 Sum_probs=38.4
Q ss_pred HHHHHHHHHhCCCCcEEE--EecCCChHHHHHHHhcCCcEEEe-----CCCChHHHHHHHHHHHH
Q 040406 16 LELQKEINEEFIHLPVMV--MSSDDRESVIMKSLASGAVFYMV-----KPVNPDALRNVWQYAVT 73 (566)
Q Consensus 16 ~eLLe~Lr~~~p~IPVIv--LSa~~d~~~~~~Al~aGA~dYL~-----KP~~~eeL~~aI~~vL~ 73 (566)
+++++++++.. .+|||+ ..+-.+.+.+.+++++||+.++. |.-++.+..+.+...+.
T Consensus 196 ~~ll~~i~~~~-~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~dp~~~~~~l~~ai~ 259 (297)
T 4adt_A 196 IDLILLTRKLK-RLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMASSIVMAVS 259 (297)
T ss_dssp HHHHHHHHHHT-SCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-CCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCCHHHHHHHHHHHHH
Confidence 67788887765 578774 44445788899999999999876 43445444444444443
No 247
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=22.16 E-value=1.4e+02 Score=27.96 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhc---CCcEEEe
Q 040406 15 GLELQKEINEEFIHLPVMVMSSDDRESVIMKSLAS---GAVFYMV 56 (566)
Q Consensus 15 G~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~a---GA~dYL~ 56 (566)
.+++++++++.. ++|||+..+-.+.+.+.++++. ||+.++.
T Consensus 181 ~~~~~~~l~~~~-~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~v 224 (244)
T 2y88_A 181 NLDLLAGVADRT-DAPVIASGGVSSLDDLRAIATLTHRGVEGAIV 224 (244)
T ss_dssp CHHHHHHHHTTC-SSCEEEESCCCSHHHHHHHHTTGGGTEEEEEE
T ss_pred CHHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHhhccCCCCEEEE
Confidence 478888888654 8999998888888888899988 9988665
No 248
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*
Probab=22.01 E-value=1.2e+02 Score=30.35 Aligned_cols=47 Identities=23% Similarity=0.271 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEE-eCCC
Q 040406 13 MNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYM-VKPV 59 (566)
Q Consensus 13 mDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL-~KP~ 59 (566)
...++++.++++..+++|||...+-.+...+.+++.+||+... -.|+
T Consensus 241 ~~~~~~l~~v~~~~~~ipvia~GGI~~~~d~~kal~~GAd~V~igr~~ 288 (332)
T 1vcf_A 241 IPTARAILEVREVLPHLPLVASGGVYTGTDGAKALALGADLLAVARPL 288 (332)
T ss_dssp CBHHHHHHHHHHHCSSSCEEEESSCCSHHHHHHHHHHTCSEEEECGGG
T ss_pred ccHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHhCCChHhhhHHH
Confidence 3457788888887667999999999999999999999998854 4453
No 249
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=21.83 E-value=59 Score=29.88 Aligned_cols=41 Identities=12% Similarity=0.174 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEe
Q 040406 15 GLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV 56 (566)
Q Consensus 15 G~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~ 56 (566)
|.+.++++++..+++||++..+-. .+.+.+++++||+.+..
T Consensus 137 g~~~~~~l~~~~~~~pvia~GGI~-~~~~~~~~~~Ga~~v~v 177 (205)
T 1wa3_A 137 GPQFVKAMKGPFPNVKFVPTGGVN-LDNVCEWFKAGVLAVGV 177 (205)
T ss_dssp HHHHHHHHHTTCTTCEEEEBSSCC-TTTHHHHHHHTCSCEEE
T ss_pred CHHHHHHHHHhCCCCcEEEcCCCC-HHHHHHHHHCCCCEEEE
Confidence 678888888777788988877665 56778889999988654
No 250
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=21.81 E-value=1.7e+02 Score=26.52 Aligned_cols=71 Identities=15% Similarity=0.284 Sum_probs=40.0
Q ss_pred CcEEEEeCCCCC-CCHHHHHHHHHHhCCCCcEEEEecCCC---hHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHhh
Q 040406 1 IDLVITDLHMPE-MNGLELQKEINEEFIHLPVMVMSSDDR---ESVIMKSLASGAVFYMVKPVNPDALRNVWQYAVTSK 75 (566)
Q Consensus 1 pDLVLlDi~MPd-mDG~eLLe~Lr~~~p~IPVIvLSa~~d---~~~~~~Al~aGA~dYL~KP~~~eeL~~aI~~vL~~~ 75 (566)
.|+||.++.-++ ..++|+--.. ....|||++..... ...+....... ..|-.+.++.++|...|...++..
T Consensus 78 aD~vva~~~~~d~Gt~~EiGyA~---algKPVi~l~~~~~~~~~n~M~~g~~~~-~~~~~~~y~~~el~~~l~~~~~~~ 152 (165)
T 2khz_A 78 ADVVVAEVTQPSLGVGYELGRAV---ALGKPILCLFRPQSGRVLSAMIRGAADG-SRFQVWDYAEGEVETMLDRYFEAY 152 (165)
T ss_dssp CSEEEEECSSCCHHHHHHHHHHH---HTCSSEEEEECTTTTCCCCHHHHHTCCS-SSEEEEECCTTTHHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCCHHHHHHHHH---HCCCEEEEEEcCCCCCcchhhhcccCcc-ceeEEEecCHHHHHHHHHHHHHhc
Confidence 378888776222 2234444332 23789999876552 12232222111 234444458899999999888654
No 251
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=21.80 E-value=2.1e+02 Score=28.46 Aligned_cols=42 Identities=19% Similarity=0.235 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEe
Q 040406 14 NGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMV 56 (566)
Q Consensus 14 DG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~ 56 (566)
..+++++++++.. ++|||+-.+-.+.+.+.+++..||+....
T Consensus 159 ~~~~~l~~v~~~~-~iPviaaGGI~~~~~v~~al~~GAdgV~v 200 (328)
T 2gjl_A 159 PGLVLLPAAANRL-RVPIIASGGFADGRGLVAALALGADAINM 200 (328)
T ss_dssp CHHHHHHHHHTTC-CSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred cHHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 5678888888765 79999888887888888999999998665
No 252
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=21.35 E-value=1.1e+02 Score=28.98 Aligned_cols=41 Identities=20% Similarity=0.128 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhc---CCcEEEe
Q 040406 15 GLELQKEINEEFIHLPVMVMSSDDRESVIMKSLAS---GAVFYMV 56 (566)
Q Consensus 15 G~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~a---GA~dYL~ 56 (566)
.+++++++++.. ++|||+..+-.+.+.+.++++. ||+.++.
T Consensus 178 ~~~~~~~i~~~~-~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~v 221 (244)
T 1vzw_A 178 NLELLKNVCAAT-DRPVVASGGVSSLDDLRAIAGLVPAGVEGAIV 221 (244)
T ss_dssp CHHHHHHHHHTC-SSCEEEESCCCSHHHHHHHHTTGGGTEEEEEE
T ss_pred CHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHhhccCCCceeee
Confidence 378889998765 7999998888888889999998 9998765
No 253
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=21.03 E-value=94 Score=33.89 Aligned_cols=52 Identities=13% Similarity=0.215 Sum_probs=41.7
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHh-cCCcEEEe------CCCChHHHHHHH
Q 040406 16 LELQKEINEEFIHLPVMVMSSDDRESVIMKSLA-SGAVFYMV------KPVNPDALRNVW 68 (566)
Q Consensus 16 ~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~-aGA~dYL~------KP~~~eeL~~aI 68 (566)
++++++|++.. .+|||.--+-.+.+.+.++++ .|+++.+. .++...++++.+
T Consensus 485 ~~li~~l~~~~-~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a~~~~~~~~~e~~~~l 543 (555)
T 1jvn_A 485 LELIEHVKDAV-KIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRGEFTVNDVKEYL 543 (555)
T ss_dssp HHHHHHHHHHC-SSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHTTSCCHHHHHHHH
T ss_pred HHHHHHHHHhC-CccEEEECCCCCHHHHHHHHHhcCChHHHHHHHHHcCCCCHHHHHHHH
Confidence 78999998875 899998877888899999987 79998654 367777776654
No 254
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=20.82 E-value=71 Score=26.05 Aligned_cols=47 Identities=19% Similarity=0.269 Sum_probs=35.6
Q ss_pred hhhhchhhhhHHHHHHHHhcccchhHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 040406 143 KVVWTNSLHNRFLQAIRHITLEKAVPKKILEFMNVPGLTRENVASHLQKYRI 194 (566)
Q Consensus 143 rL~WTsELHeKFLaAIgKLGlEKAIPKrILElMnvpGLTrEEVaSHLQKyrl 194 (566)
.-.||.+-+..|+.+|.+.| .. =..|-+.| ++=|.+++..|.++|++
T Consensus 18 ~~~WT~eEd~~Ll~~v~~~G-~~--W~~IA~~v--~~RT~~qcr~r~~~~~i 64 (79)
T 2yus_A 18 GREWTEQETLLLLEALEMYK-DD--WNKVSEHV--GSRTQDECILHFLRLPI 64 (79)
T ss_dssp SCCCCHHHHHHHHHHHHHSS-SC--HHHHHHHH--SSCCHHHHHHHHTTSCC
T ss_pred CCCcCHHHHHHHHHHHHHhC-CC--HHHHHHHc--CCCCHHHHHHHHHHhcc
Confidence 45799999999999999998 33 13344443 57899999998887743
No 255
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=20.79 E-value=89 Score=29.47 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEE-----eCCCChHHHHHHHHHHHHh
Q 040406 15 GLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYM-----VKPVNPDALRNVWQYAVTS 74 (566)
Q Consensus 15 G~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL-----~KP~~~eeL~~aI~~vL~~ 74 (566)
|.+.++.++...+++||+.+-+-. .+.+...+++|++.+. .+ -+++++.+..++++..
T Consensus 138 G~~~lk~l~~~~~~ipvvaiGGI~-~~n~~~~l~aGa~~vavgSai~~-~d~~~i~~~a~~~~~~ 200 (207)
T 2yw3_A 138 GVRVLRAYAEVFPEVRFLPTGGIK-EEHLPHYAALPNLLAVGGSWLLQ-GNLEAVRAKVRAAKAL 200 (207)
T ss_dssp HHHHHHHHHHHCTTCEEEEBSSCC-GGGHHHHHTCSSBSCEEESGGGS-SCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhhCCCCcEEEeCCCC-HHHHHHHHhCCCcEEEEehhhhC-CCHHHHHHHHHHHHHH
Confidence 889999999988899998766654 5677788999987643 33 4566677777666543
No 256
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=20.76 E-value=2.2e+02 Score=27.80 Aligned_cols=54 Identities=7% Similarity=-0.008 Sum_probs=41.7
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeCC
Q 040406 3 LVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKP 58 (566)
Q Consensus 3 LVLlDi~MPdmDG~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~KP 58 (566)
+|-++- .....-.++++++++...++||++=-+-.+.+.+.++++ ||+..++=.
T Consensus 158 ~VYl~s-~G~~~~~~~i~~i~~~~~~~Pv~vGgGI~t~e~a~~~~~-gAd~VIVGS 211 (240)
T 1viz_A 158 IFYLEY-SGVLGDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYAE-HADVIVVGN 211 (240)
T ss_dssp EEEEEC-TTSCCCHHHHHHHHHTCSSSEEEEESSCCSHHHHHHHHT-TCSEEEECT
T ss_pred EEEEeC-CCccChHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHh-CCCEEEECh
Confidence 555555 333344789999998765889988778888899988888 999988875
No 257
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=20.74 E-value=1.9e+02 Score=27.09 Aligned_cols=58 Identities=12% Similarity=0.118 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHhCCCCcEEEEec--CCChHHHHHHHhcCCcEEEeCCCChHH-HHHHHHHH
Q 040406 14 NGLELQKEINEEFIHLPVMVMSS--DDRESVIMKSLASGAVFYMVKPVNPDA-LRNVWQYA 71 (566)
Q Consensus 14 DG~eLLe~Lr~~~p~IPVIvLSa--~~d~~~~~~Al~aGA~dYL~KP~~~ee-L~~aI~~v 71 (566)
.|.++++.||+..++.||++..- ......+..+.++||+....-....++ +.+.++.+
T Consensus 45 ~G~~~i~~lr~~~~~~~i~ld~~l~d~p~~~~~~~~~aGad~i~vh~~~~~~~~~~~~~~~ 105 (218)
T 3jr2_A 45 EGMKAVSTLRHNHPNHILVCDMKTTDGGAILSRMAFEAGADWITVSAAAHIATIAACKKVA 105 (218)
T ss_dssp HTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHHTCSEEEEETTSCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhCCCCcEEEEEeecccHHHHHHHHHhcCCCEEEEecCCCHHHHHHHHHHH
Confidence 46789999999877777764221 222345677889999988776555433 45544433
No 258
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=20.22 E-value=1.6e+02 Score=29.95 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHhCCCCcEEEEe--cCCChHHHHHHHhcCCcEEEeC-CC-ChHHHHHHHHHH
Q 040406 13 MNGLELQKEINEEFIHLPVMVMS--SDDRESVIMKSLASGAVFYMVK-PV-NPDALRNVWQYA 71 (566)
Q Consensus 13 mDG~eLLe~Lr~~~p~IPVIvLS--a~~d~~~~~~Al~aGA~dYL~K-P~-~~eeL~~aI~~v 71 (566)
.+-+++++++++..+++++++++ .......+.+|.++|++.+..- |. +.+++...++.+
T Consensus 67 ~~~~e~l~~i~~~~~~~~i~~l~~p~~~~~~~i~~a~~aGvd~v~I~~~~s~~~~~~~~i~~a 129 (345)
T 1nvm_A 67 HTDLEYIEAVAGEISHAQIATLLLPGIGSVHDLKNAYQAGARVVRVATHCTEADVSKQHIEYA 129 (345)
T ss_dssp SCHHHHHHHHHTTCSSSEEEEEECBTTBCHHHHHHHHHHTCCEEEEEEETTCGGGGHHHHHHH
T ss_pred CCHHHHHHHHHhhCCCCEEEEEecCCcccHHHHHHHHhCCcCEEEEEEeccHHHHHHHHHHHH
Confidence 57899999999887899999885 3445678889999999885542 22 224555555544
No 259
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=20.07 E-value=1.6e+02 Score=27.71 Aligned_cols=42 Identities=17% Similarity=0.102 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHhcCCcEEEeC
Q 040406 15 GLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVK 57 (566)
Q Consensus 15 G~eLLe~Lr~~~p~IPVIvLSa~~d~~~~~~Al~aGA~dYL~K 57 (566)
.++.++++++.. ++||++-.+-...+.+.++++.||+.++.=
T Consensus 179 ~~~~i~~l~~~~-~~pi~~~GGI~~~e~i~~~~~~Gad~vivG 220 (248)
T 1geq_A 179 AYDLLRRAKRIC-RNKVAVGFGVSKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp HHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHhhc-CCCEEEEeecCCHHHHHHHHHcCCCEEEEc
Confidence 356788888776 789888877777688888889999998875
Done!