BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040408
(235 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9BZE9|ASPC1_HUMAN Tether containing UBX domain for GLUT4 OS=Homo sapiens GN=ASPSCR1
PE=1 SV=1
Length = 553
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 98/218 (44%), Gaps = 45/218 (20%)
Query: 52 DEFYEFTAEDYYRILA---ANKKKEDNKFLKTRRIREAEEAAGTGRSKFRK--AVIIRVR 106
DEF+E T +D R LA + +K+ + L T+ REA+ + K + V +RV
Sbjct: 342 DEFFELTVDDVRRRLAQLKSERKRLEEAPLVTKAFREAQI-----KEKLERYPKVALRVL 396
Query: 107 FPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFI 166
FPD + L+ F PSET+ L DF+R L ++ FYL+ PPK ++ D +Q + A
Sbjct: 397 FPDRYVLQGFFRPSETVGDLRDFVRSH-LGNPELSFYLFITPPKTVLDDHTQTLFQANLF 455
Query: 167 PGAIVYFSYDDAYATVAAAANSGPFLREDVMSLKGCLQVIADHQQQ--------PHDDPK 218
P A+V+ ++ A P L E +S ++A + + P DP
Sbjct: 456 PAALVHLGAEE-----PAGVYLEPGLLEHAISPSAADVLVARYMSRAAGSPSPLPAPDPA 510
Query: 219 PAAE---------------------KKSVKLRPKWLKI 235
P +E K+S+ PKWLK+
Sbjct: 511 PKSEPAAEEGALVPPEPIPGTAQPVKRSLGKVPKWLKL 548
>sp|Q8VBT9|ASPC1_MOUSE Tether containing UBX domain for GLUT4 OS=Mus musculus GN=Aspscr1
PE=1 SV=1
Length = 550
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 72/131 (54%), Gaps = 11/131 (8%)
Query: 52 DEFYEFTAEDYYRILA---ANKKKEDNKFLKTRRIREAEEAAGTGRSKFRK--AVIIRVR 106
DEF+E T +D R LA + +K+ + L T+ REA+ + K + V +RV
Sbjct: 338 DEFFEVTVDDVRRRLAQLKSERKRLEEAPLVTKAFREAQM-----KEKLERYPKVALRVL 392
Query: 107 FPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFI 166
FPD + L+ F PSET+ L DF+R L ++ FYL+ APPK ++ D + + A
Sbjct: 393 FPDRYILQGFFRPSETVGDLRDFVRSH-LGNPELSFYLFIAPPKMVLDDHTLTLFQANLF 451
Query: 167 PGAIVYFSYDD 177
P A+V+F ++
Sbjct: 452 PAALVHFGAEE 462
>sp|Q9BZV1|UBXN6_HUMAN UBX domain-containing protein 6 OS=Homo sapiens GN=UBXN6 PE=1 SV=1
Length = 441
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 91/200 (45%), Gaps = 19/200 (9%)
Query: 2 SVESSSPKLELAAATKEKFGREIRVFETSGQFSSSPRIDETDDDNDDDDDDEFYEFTAED 61
S+E +L A + K R+ RVF+ SP + + D F+ TAE+
Sbjct: 252 SLERHKEQLLAAEPVRAKLDRQRRVFQ------PSPLASQFELPGD------FFNLTAEE 299
Query: 62 YYRILAANKKK-EDNKFLKTRRIREAEEAAGTGRSKFRKAVIIRVRFPDNHTLEVNFHPS 120
R + E L+T+ +RE EE G + + ++RVR PD L+ F+
Sbjct: 300 IKREQRLRSEAVERLSVLRTKAMREKEEQRGLRKYNY---TLLRVRLPDGCLLQGTFYAR 356
Query: 121 ETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYDDAYA 180
E + ++ F+R L +PF L + +++ +D + G +P A++ FS+D A
Sbjct: 357 ERLGAVYGFVR-EALQSDWLPFELLASGGQKLSEDENLALNECGLVPSALLTFSWDMAVL 415
Query: 181 TVAAAANSGP--FLREDVMS 198
AA + P L+ +++S
Sbjct: 416 EDIKAAGAEPDSILKPELLS 435
>sp|Q99PL6|UBXN6_MOUSE UBX domain-containing protein 6 OS=Mus musculus GN=Ubxn6 PE=1 SV=1
Length = 442
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 12/152 (7%)
Query: 53 EFYEFTAEDYYRILAANKKK-EDNKFLKTRRIREAEEAAGTGRSKFRKAV--IIRVRFPD 109
+F+ TAE+ R + E L+T+ +RE EE + + RK ++RVR PD
Sbjct: 291 DFFSLTAEEVKREQRLRTEAVERLSSLRTKAMREKEE-----QRELRKYTYALVRVRLPD 345
Query: 110 NHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGA 169
L+ F+ E + +L F+R L +PF L + +++ ++ + G +P A
Sbjct: 346 GCLLQGTFYAREKLSALFRFVR-EALQNDWLPFELRASGGQKLEENEALALNECGLVPSA 404
Query: 170 IVYFSYDDAYATVAAAANSGP---FLREDVMS 198
++ FS+D + AA + P LR ++++
Sbjct: 405 LLTFSWDASVLEDIRAAGAEPAKSVLRPELLA 436
>sp|Q2KIJ6|UBXN6_BOVIN UBX domain-containing protein 6 OS=Bos taurus GN=UBXN6 PE=2 SV=1
Length = 441
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 101 VIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDF 160
++RVR PD L+ F+ E + +L F+R L +PF L + +++ +D + F
Sbjct: 337 TLLRVRLPDGCLLQGTFYARERVAALYGFVR-EALQNDWLPFELLASGGQKLSEDENLAF 395
Query: 161 YSAGFIPGAIVYFSYDDAYATVAAAANSGP---FLREDVMS 198
G +P A++ FS D A AA + P L+ +++S
Sbjct: 396 NECGLVPSALLTFSLDAAVLEDIRAAGTQPDTSILKPELLS 436
>sp|P54730|UBX4_YEAST UBX domain-containing protein 4 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=UBX4 PE=1 SV=1
Length = 416
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 92/204 (45%), Gaps = 27/204 (13%)
Query: 47 DDDDDDEFYEFTAED---YYRILAANKKKEDNKFLKTRRIREAEEAAGTGRSKFRKAVII 103
D +D+E YE T E Y ++L++ L T+R+RE ++K ++
Sbjct: 222 DQIEDEEDYELTVEQAKKYQKMLSSKAGTLGGPIL-TKRLREQSANNLPKKNKAISECLL 280
Query: 104 RVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPP-KRIIKDMSQDFYS 162
RV+FPD +++ F P+E M+++ + + + L ++PF L + P K + KD +
Sbjct: 281 RVKFPDRSHIQIAFKPNEDMRTVYNVVS-QFLIDENMPFTLNQSHPFKPLAKDDKKLLDD 339
Query: 163 AGFIPGAIVYFSYDDAYATVAAAANSGPFLREDVM-----------SLKGCLQVIADHQQ 211
F ++ F + + ++GP ++ ++ + + + Q
Sbjct: 340 LEFGSKTMLLFETN--------SNSNGPLIKAHLLEDAQKITHETRTTPSVNTINKSNPQ 391
Query: 212 QPHDDPKPAAEKKSVKLRPKWLKI 235
P D+ + KK++ PKW+K+
Sbjct: 392 GPSDN--ATSIKKTLNRVPKWMKL 413
>sp|Q6GL77|UBXN1_XENTR UBX domain-containing protein 1 OS=Xenopus tropicalis GN=ubxn1 PE=2
SV=1
Length = 287
Score = 35.4 bits (80), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRII--KDMSQDF 160
I+VR D L F E + ++ ++ + PF L T+ P+R+ +DM +
Sbjct: 212 IQVRLLDGSALSQTFRAREQLAAVRLYVELNWPGGAPGPFNLLTSFPRRVFTEEDMEKPL 271
Query: 161 YSAGFIPGAIVYFS 174
G +P A++ +
Sbjct: 272 QELGLVPSAVLIVA 285
>sp|O67658|MURJ_AQUAE Protein MurJ homolog OS=Aquifex aeolicus (strain VF5) GN=murJ PE=3
SV=1
Length = 499
Score = 34.3 bits (77), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 7/99 (7%)
Query: 100 AVIIRVRFPDN--HTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYT-----APPKRI 152
VII + FP+ + ET V+FL+ +L V FY Y+ K
Sbjct: 96 VVIIGLLFPEEIISVISPGIKEKETFSYAVEFLKFTILYLPLVSFYAYSMAILLVQGKFF 155
Query: 153 IKDMSQDFYSAGFIPGAIVYFSYDDAYATVAAAANSGPF 191
+ +SQ ++ GFI ++ F Y+ A G F
Sbjct: 156 VPSVSQTLFNLGFILSLVILFHTLGHYSLALAVLIGGLF 194
>sp|P08548|LIN1_NYCCO LINE-1 reverse transcriptase homolog OS=Nycticebus coucang PE=1
SV=1
Length = 1260
Score = 32.7 bits (73), Expect = 2.2, Method: Composition-based stats.
Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 25/145 (17%)
Query: 95 SKFRKAVIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIK 154
SKF+K II F D+H ++V + + + + ++ L D ++ K I K
Sbjct: 214 SKFKKIEIIPCIFSDHHGIKVELNNNRNLHTHTKTWKLNNLMLKDT--WVIDEIKKEITK 271
Query: 155 DMSQDFYSAGFIPGAIVYFSYDDAYATVAAAANSGPFL----------REDVMSLKGCLQ 204
+ Q+ +Y + + T A A G F+ RE+V +L G L+
Sbjct: 272 FLEQNNNQDT---------NYQNLWDT-AKAVLRGKFIALQAFLKKTEREEVNNLMGHLK 321
Query: 205 VIADHQQQPHDDPKPAAEKKSVKLR 229
+ +++ H +PKP+ K+ K+R
Sbjct: 322 QL---EKEEHSNPKPSRRKEITKIR 343
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,049,245
Number of Sequences: 539616
Number of extensions: 3731938
Number of successful extensions: 29124
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 90
Number of HSP's that attempted gapping in prelim test: 26643
Number of HSP's gapped (non-prelim): 1488
length of query: 235
length of database: 191,569,459
effective HSP length: 114
effective length of query: 121
effective length of database: 130,053,235
effective search space: 15736441435
effective search space used: 15736441435
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)