Query 040408
Match_columns 235
No_of_seqs 176 out of 554
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 12:53:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040408.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040408hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dzk_A UBX domain-containing p 99.8 4.7E-19 1.6E-23 137.5 10.6 82 95-178 9-92 (109)
2 3qx1_A FAS-associated factor 1 99.7 1.7E-17 5.9E-22 122.6 9.8 74 98-174 6-81 (84)
3 1wj4_A KIAA0794 protein; UBX d 99.7 1.7E-17 6E-22 131.5 8.7 79 97-178 41-121 (124)
4 1s3s_G P47 protein; AAA ATPase 99.7 7.2E-17 2.5E-21 128.4 8.6 75 98-175 51-126 (127)
5 2cr5_A Reproduction 8; UBX dom 99.6 6.5E-16 2.2E-20 119.6 9.2 79 97-178 21-100 (109)
6 2kzr_A Ubiquitin thioesterase 98.4 3.6E-07 1.2E-11 66.8 5.8 73 103-177 3-78 (86)
7 2pjh_A Protein NPL4, nuclear p 97.3 0.0002 6.8E-09 51.8 3.7 71 102-174 6-78 (80)
8 3a9j_A Ubiquitin; protein comp 97.1 0.003 1E-07 43.4 8.6 70 103-176 3-72 (76)
9 1ndd_A NEDD8, protein (ubiquit 97.1 0.004 1.4E-07 42.8 9.0 70 103-176 3-72 (76)
10 3mtn_B UBA80, ubcep1, ubiquiti 97.0 0.0041 1.4E-07 43.9 8.3 72 103-178 6-77 (85)
11 3phx_B Ubiquitin-like protein 96.9 0.0092 3.2E-07 41.7 9.2 69 103-175 7-75 (79)
12 1yx5_B Ubiquitin; proteasome, 96.8 0.0089 3E-07 43.9 8.9 72 103-178 3-74 (98)
13 2dzi_A Ubiquitin-like protein 96.7 0.009 3.1E-07 41.7 8.5 71 100-175 8-78 (81)
14 2bwf_A Ubiquitin-like protein 96.7 0.0084 2.9E-07 41.5 8.1 68 103-175 7-74 (77)
15 3k9o_B Ubiquitin, UBB+1; E2-25 96.7 0.0089 3E-07 43.4 8.2 72 103-178 4-75 (96)
16 4dwf_A HLA-B-associated transc 96.6 0.014 4.8E-07 41.9 8.7 72 103-179 8-79 (90)
17 3n3k_B Ubiquitin; hydrolase, p 96.6 0.011 3.7E-07 41.7 7.9 72 103-178 6-77 (85)
18 3dbh_I NEDD8; cell cycle, acti 96.5 0.013 4.5E-07 41.6 8.3 71 100-175 13-83 (88)
19 3v6c_B Ubiquitin; structural g 96.5 0.017 5.8E-07 41.7 8.8 73 98-175 16-88 (91)
20 2kan_A Uncharacterized protein 96.5 0.026 9.1E-07 41.4 9.8 74 98-176 14-87 (94)
21 1wju_A NEDD8 ultimate buster-1 96.5 0.017 5.6E-07 43.6 8.6 70 100-174 16-89 (100)
22 1wh3_A 59 kDa 2'-5'-oligoadeny 96.4 0.017 6E-07 41.0 8.4 74 99-177 7-80 (87)
23 4hcn_B Polyubiquitin, ubiquiti 96.3 0.022 7.7E-07 41.8 8.6 69 103-175 25-93 (98)
24 4fbj_B NEDD8; effector-HOST ta 96.3 0.022 7.5E-07 41.0 8.3 72 103-178 3-74 (88)
25 4eew_A Large proline-rich prot 96.3 0.027 9.1E-07 40.2 8.6 70 100-175 18-87 (88)
26 1wia_A Hypothetical ubiquitin- 96.3 0.023 7.8E-07 41.4 8.3 72 100-178 8-79 (95)
27 2kc2_A Talin-1, F1; FERM, adhe 96.2 0.026 8.9E-07 44.4 8.7 73 102-175 13-121 (128)
28 2hj8_A Interferon-induced 17 k 96.2 0.02 6.9E-07 41.2 7.5 72 103-178 7-78 (88)
29 1uel_A HHR23B, UV excision rep 96.2 0.063 2.1E-06 39.1 10.3 72 103-178 3-77 (95)
30 2ojr_A Ubiquitin; lanthide-bin 96.1 0.043 1.5E-06 41.3 9.5 72 100-176 36-107 (111)
31 2wyq_A HHR23A, UV excision rep 96.1 0.045 1.5E-06 38.5 9.1 70 103-176 8-80 (85)
32 3m62_B UV excision repair prot 96.1 0.031 1.1E-06 41.9 8.6 72 103-178 4-75 (106)
33 1wy8_A NP95-like ring finger p 96.1 0.043 1.5E-06 39.1 9.0 74 100-178 8-83 (89)
34 2faz_A Ubiquitin-like containi 96.0 0.043 1.5E-06 38.0 8.4 69 103-175 5-75 (78)
35 3vdz_A Ubiquitin-40S ribosomal 95.9 0.05 1.7E-06 41.0 8.9 72 100-176 36-107 (111)
36 2uyz_B Small ubiquitin-related 95.9 0.036 1.2E-06 38.6 7.6 70 103-176 6-75 (79)
37 1wjn_A Tubulin-folding protein 95.9 0.059 2E-06 39.5 9.0 74 103-177 12-93 (97)
38 1sif_A Ubiquitin; hydrophobic 95.8 0.048 1.6E-06 39.2 8.3 70 103-176 12-81 (88)
39 1we7_A SF3A1 protein; structur 95.8 0.053 1.8E-06 41.0 8.9 74 99-177 25-108 (115)
40 1v5o_A 1700011N24RIK protein; 95.8 0.043 1.5E-06 40.6 8.1 73 103-178 10-86 (102)
41 1ttn_A DC-UBP, dendritic cell- 95.8 0.043 1.5E-06 40.9 8.1 75 99-178 23-97 (106)
42 1we6_A Splicing factor, putati 95.8 0.052 1.8E-06 40.8 8.6 73 100-177 28-104 (111)
43 1v2y_A 3300001G02RIK protein; 95.7 0.025 8.6E-07 42.8 6.4 71 103-176 10-95 (105)
44 1wf9_A NPL4 family protein; be 95.6 0.037 1.3E-06 41.5 7.0 75 102-178 9-96 (107)
45 2kdi_A Ubiquitin, vacuolar pro 95.5 0.075 2.6E-06 40.3 8.5 76 98-178 8-83 (114)
46 1wx7_A Ubiquilin 3; ubiquitin- 95.4 0.083 2.8E-06 39.2 8.4 70 103-177 20-89 (106)
47 1j8c_A Ubiquitin-like protein 95.4 0.14 4.7E-06 39.6 9.9 74 100-179 33-106 (125)
48 2klc_A Ubiquilin-1; ubiquitin- 95.4 0.12 4E-06 38.3 9.1 72 99-176 25-96 (101)
49 1wxv_A BAG-family molecular ch 95.3 0.16 5.6E-06 36.4 9.4 72 100-176 8-84 (92)
50 2daf_A FLJ35834 protein; hypot 95.3 0.13 4.4E-06 39.8 9.2 70 103-176 18-88 (118)
51 3b08_A Polyubiquitin-C, ubiqui 95.2 0.096 3.3E-06 40.5 8.6 71 103-177 3-73 (152)
52 2kk8_A Uncharacterized protein 95.2 0.085 2.9E-06 37.8 7.5 73 98-175 9-82 (84)
53 1wyw_B Ubiquitin-like protein 95.2 0.074 2.5E-06 39.0 7.4 72 99-175 21-92 (97)
54 1wx8_A Riken cDNA 4931431F19; 95.1 0.068 2.3E-06 38.8 6.8 72 100-177 18-89 (96)
55 3b08_A Polyubiquitin-C, ubiqui 94.9 0.11 3.6E-06 40.3 8.1 69 103-175 79-147 (152)
56 2kdb_A Homocysteine-responsive 94.8 0.18 6.3E-06 37.4 8.6 70 99-173 23-98 (99)
57 3b1l_X E3 ubiquitin-protein li 93.8 0.0052 1.8E-07 42.6 0.0 69 103-175 3-71 (76)
58 1wgd_A Homocysteine-responsive 94.7 0.22 7.7E-06 35.8 8.8 72 100-176 8-85 (93)
59 1uh6_A Ubiquitin-like 5; beta- 94.7 0.13 4.4E-06 38.6 7.6 71 100-175 29-99 (100)
60 3q3f_A Ribonuclease/ubiquitin 94.7 0.13 4.5E-06 42.8 8.4 73 99-176 105-177 (189)
61 3plu_A Ubiquitin-like modifier 94.6 0.23 8E-06 36.8 8.7 72 99-175 21-92 (93)
62 3m63_B Ubiquitin domain-contai 94.5 0.11 3.8E-06 38.5 6.9 68 103-175 31-98 (101)
63 1x1m_A Ubiquitin-like protein 94.5 0.15 5.2E-06 38.0 7.7 72 100-176 13-99 (107)
64 2kd0_A LRR repeats and ubiquit 94.5 0.23 8E-06 35.4 8.3 68 103-175 15-82 (85)
65 3rt3_B Ubiquitin-like protein 94.4 0.25 8.4E-06 38.9 9.2 71 103-177 84-154 (159)
66 1yqb_A Ubiquilin 3; structural 94.4 0.16 5.5E-06 37.5 7.5 72 100-177 23-94 (100)
67 3l0w_B Monoubiquitinated proli 94.4 0.26 9E-06 39.9 9.4 71 103-177 3-73 (169)
68 2l7r_A Ubiquitin-like protein 94.2 0.2 6.9E-06 36.3 7.6 67 103-175 22-88 (93)
69 1wgg_A Ubiquitin carboxyl-term 93.8 0.14 4.8E-06 37.6 6.1 66 103-174 10-76 (96)
70 3rt3_B Ubiquitin-like protein 93.7 0.3 1E-05 38.4 8.4 71 103-176 5-76 (159)
71 1v5t_A 8430435I17RIK protein; 93.7 0.26 8.9E-06 35.5 7.3 70 103-175 10-81 (90)
72 1wgh_A Ubiquitin-like 3, HCG-1 93.4 0.78 2.7E-05 35.1 9.9 69 103-175 19-97 (116)
73 3u30_A Ubiquitin, linear DI-ub 93.4 0.37 1.3E-05 38.6 8.4 73 99-176 20-92 (172)
74 1v86_A DNA segment, CHR 7, way 93.0 0.23 7.8E-06 36.2 6.1 66 103-174 20-85 (95)
75 1se9_A Ubiquitin family; ubiqu 92.7 0.56 1.9E-05 36.6 8.3 72 102-177 18-103 (126)
76 2kjr_A CG11242; UBL, ubiquitin 92.5 0.63 2.1E-05 34.2 7.9 71 103-174 18-93 (95)
77 3u5e_m 60S ribosomal protein L 92.4 0.024 8.2E-07 43.9 0.0 71 103-177 3-73 (128)
78 2gow_A HCG-1 protein, ubiquiti 91.8 0.7 2.4E-05 35.8 7.8 71 100-175 18-98 (125)
79 1v6e_A Cytoskeleton-associated 91.5 1 3.5E-05 32.6 8.0 73 100-174 8-85 (95)
80 4ajy_B Transcription elongatio 91.5 0.76 2.6E-05 35.5 7.6 70 103-177 5-81 (118)
81 3u30_A Ubiquitin, linear DI-ub 91.4 0.73 2.5E-05 36.8 7.9 69 103-175 99-167 (172)
82 3ai5_A Yeast enhanced green fl 90.5 1.1 3.8E-05 39.9 8.8 72 99-175 233-304 (307)
83 1wm3_A Ubiquitin-like protein 90.4 3 0.0001 28.5 9.4 68 103-174 4-71 (72)
84 3u5c_f 40S ribosomal protein S 90.1 0.056 1.9E-06 43.5 0.0 71 103-177 3-73 (152)
85 4a20_A Ubiquitin-like protein 89.7 2.5 8.5E-05 31.1 8.9 71 100-175 20-94 (98)
86 2dzj_A Synaptic glycoprotein S 89.6 1.5 5.1E-05 31.5 7.4 70 103-174 13-86 (88)
87 3ivf_A Talin-1; FERM domain, c 89.2 1.5 5.3E-05 39.2 8.8 71 103-174 88-165 (371)
88 2dzm_A FAS-associated factor 1 89.0 1.8 6.1E-05 32.1 7.6 73 103-179 12-84 (100)
89 2lxa_A Ubiquitin-like protein 88.9 2 6.7E-05 30.9 7.6 70 103-176 4-77 (87)
90 2d07_B Ubiquitin-like protein 88.8 3.7 0.00013 29.7 9.2 75 98-177 16-90 (93)
91 4b6w_A Tubulin-specific chaper 88.6 1.3 4.6E-05 31.7 6.5 65 109-175 13-82 (86)
92 2io0_B Small ubiquitin-related 88.4 5.6 0.00019 28.7 10.0 73 100-177 6-78 (91)
93 1wz0_A Ubiquitin-like protein 88.1 3.4 0.00012 30.8 8.7 75 98-177 23-97 (104)
94 1t0y_A Tubulin folding cofacto 88.0 3.6 0.00012 31.2 9.0 72 103-175 9-85 (122)
95 2io1_B Small ubiquitin-related 88.0 4.1 0.00014 29.6 9.0 76 99-179 7-82 (94)
96 2fnj_B Transcription elongatio 87.0 1.9 6.4E-05 33.2 6.8 69 103-176 5-80 (118)
97 2kj6_A Tubulin folding cofacto 86.4 3.2 0.00011 30.4 7.6 71 103-174 17-93 (97)
98 1oqy_A HHR23A, UV excision rep 85.5 1.9 6.6E-05 39.2 7.2 69 103-175 10-82 (368)
99 3a4r_A Nfatc2-interacting prot 85.0 7.7 0.00026 27.0 9.1 70 99-173 7-77 (79)
100 3qij_A Protein 4.1; cytoskelet 84.2 2.5 8.5E-05 36.8 7.1 71 103-174 20-93 (296)
101 3jyu_A Ubiquitin carboxyl-term 82.4 7.5 0.00026 32.7 9.2 67 112-179 153-223 (231)
102 4dbg_A Ranbp-type and C3HC4-ty 81.1 6 0.00021 29.6 7.3 77 95-176 16-99 (105)
103 2k8h_A Small ubiquitin protein 80.9 6.9 0.00024 29.4 7.6 74 99-177 26-99 (110)
104 2eke_C Ubiquitin-like protein 80.7 12 0.00042 27.8 8.9 73 98-176 30-102 (106)
105 1ef1_A Moesin; membrane, FERM 80.0 4.6 0.00016 34.5 7.2 70 103-174 4-78 (294)
106 4a3p_A Ubiquitin carboxyl-term 80.0 6 0.00021 33.0 7.7 81 95-178 124-210 (217)
107 1h4r_A Merlin; FERM, neurofibr 79.8 5.4 0.00019 34.5 7.7 73 99-174 22-98 (314)
108 3ivf_A Talin-1; FERM domain, c 79.8 5.6 0.00019 35.4 7.9 70 103-174 6-82 (371)
109 2i1j_A Moesin; FERM, coiled-co 78.1 5.8 0.0002 38.0 7.9 71 102-174 6-81 (575)
110 2al3_A TUG long isoform; TUG U 76.5 13 0.00043 27.2 7.5 69 103-175 12-80 (90)
111 3kyd_D Small ubiquitin-related 75.7 21 0.00073 27.0 9.0 73 98-175 39-111 (115)
112 3shq_A UBLCP1; phosphatase, hy 73.0 6.5 0.00022 34.9 6.3 70 103-175 8-78 (320)
113 4dxa_B KREV interaction trappe 68.2 3.3 0.00011 36.3 3.2 48 99-150 5-55 (322)
114 3pvl_A Myosin VIIA isoform 1; 67.6 11 0.00036 36.8 7.0 47 99-147 263-310 (655)
115 1wgr_A Growth factor receptor- 66.7 12 0.00042 27.7 5.6 58 98-156 8-69 (100)
116 3au4_A Myosin-X; protein-prote 66.0 11 0.00039 35.4 6.7 47 100-148 217-265 (555)
117 3tca_A Amyloid beta A4 precurs 63.5 19 0.00065 30.2 7.1 53 96-149 31-83 (291)
118 4gmv_A RAS-associated and plec 62.3 23 0.00078 30.9 7.5 70 78-150 12-81 (281)
119 3pge_A SUMO-modified prolifera 58.8 65 0.0022 26.6 9.3 75 98-178 28-102 (200)
120 2daj_A KIAA0977 protein, COBL- 56.4 38 0.0013 24.6 6.5 69 103-177 13-82 (91)
121 2xzm_9 RPS31E; ribosome, trans 55.1 2.5 8.6E-05 35.0 0.0 64 103-175 3-66 (189)
122 2npt_A Dual specificity mitoge 54.6 21 0.00072 26.4 4.9 36 102-138 16-53 (106)
123 3onh_A Ubiquitin-activating en 54.1 37 0.0013 26.3 6.5 55 121-177 20-80 (127)
124 1y8x_B Ubiquitin-activating en 51.8 8.1 0.00028 28.6 2.3 61 113-174 7-82 (98)
125 3tix_A Ubiquitin-like protein 51.7 66 0.0023 26.9 8.1 75 98-178 56-130 (207)
126 2al6_A Focal adhesion kinase 1 50.5 17 0.00058 32.5 4.8 44 103-147 10-58 (375)
127 2kmm_A Guanosine-3',5'-BIS(dip 33.4 59 0.002 21.3 4.3 26 103-130 3-28 (73)
128 2r2q_A Gamma-aminobutyric acid 32.7 1.2E+02 0.004 22.4 6.2 53 94-147 21-80 (110)
129 1eo6_A GATE-16, golgi-associat 32.5 1.5E+02 0.0053 22.0 7.6 78 94-175 22-109 (117)
130 2zjd_A Microtubule-associated 30.0 1.9E+02 0.0064 22.2 7.7 80 94-177 29-120 (130)
131 1wwt_A Threonyl-tRNA synthetas 28.7 83 0.0028 21.6 4.6 31 97-130 7-38 (88)
132 2v1y_A Phosphatidylinositol-4, 28.2 1.9E+02 0.0063 21.6 9.4 72 99-173 19-101 (108)
133 2kvu_A MKL/myocardin-like prot 27.4 72 0.0025 22.4 3.9 24 46-69 18-41 (75)
134 3m95_A Autophagy related prote 21.8 2.7E+02 0.0091 21.2 7.4 31 116-147 58-89 (125)
No 1
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=99.79 E-value=4.7e-19 Score=137.48 Aligned_cols=82 Identities=21% Similarity=0.293 Sum_probs=74.1
Q ss_pred cCCCceeEEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeec--CCCcCccccCCCCceEEE
Q 040408 95 SKFRKAVIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIK--DMSQDFYSAGFIPGAIVY 172 (235)
Q Consensus 95 ~~~~~~~~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~--d~~~tL~elgL~Psall~ 172 (235)
..+..|. ||||||||..++.+|+.++||++||+|| ...+..+..+|.|++++|+++|. |+++||.|+||+|+++|+
T Consensus 9 ~~~~~t~-IqIRlpdG~rl~~rF~~~~tl~~v~~fV-~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~ 86 (109)
T 2dzk_A 9 DRSTIAR-IQFRLPDGSSFTNQFPSDAPLEEARQFA-AQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVV 86 (109)
T ss_dssp CCSCCEE-EEEECSSSCEEEEEECTTSBHHHHHHHH-HHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEE
T ss_pred CCCCcEE-EEEECCCCCEEEEEeCCCCCHHHHHHHH-HhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEE
Confidence 4566788 9999999999999999999999999999 67766667899999999999996 678999999999999999
Q ss_pred EEeCch
Q 040408 173 FSYDDA 178 (235)
Q Consensus 173 ~~~~~~ 178 (235)
+.|...
T Consensus 87 v~~~~~ 92 (109)
T 2dzk_A 87 LLPAGR 92 (109)
T ss_dssp EECCSS
T ss_pred EEECcC
Confidence 999653
No 2
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=99.73 E-value=1.7e-17 Score=122.57 Aligned_cols=74 Identities=20% Similarity=0.364 Sum_probs=66.4
Q ss_pred CceeEEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeec--CCCcCccccCCCCceEEEEE
Q 040408 98 RKAVIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIK--DMSQDFYSAGFIPGAIVYFS 174 (235)
Q Consensus 98 ~~~~~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~--d~~~tL~elgL~Psall~~~ 174 (235)
+.|. ||||||||..++.+|+.++||++||+|| ... .....+|.|++++|++.|. |.++||.|+||+|+++|++.
T Consensus 6 ~~~~-i~iRlpdG~r~~~~F~~~~tl~~v~~fv-~~~-~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 6 PVSK-LRIRTPSGEFLERRFLASNKLQIVFDFV-ASK-GFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp CEEE-EEEECTTSCEEEEEEETTSBHHHHHHHH-HHT-TCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred CeEE-EEEECCCCCEEEEEeCCCCCHHHHHHHH-HHc-CCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 4577 9999999999999999999999999999 553 3357899999999999995 77899999999999999986
No 3
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=99.71 E-value=1.7e-17 Score=131.46 Aligned_cols=79 Identities=22% Similarity=0.343 Sum_probs=70.2
Q ss_pred CCceeEEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceee--cCCCcCccccCCCCceEEEEE
Q 040408 97 FRKAVIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRII--KDMSQDFYSAGFIPGAIVYFS 174 (235)
Q Consensus 97 ~~~~~~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l--~d~~~tL~elgL~Psall~~~ 174 (235)
-+.|. ||||||||..++.+|+.++||++||+|| ... .....+|.|++++|+++| .|.++||.|+||+|+++|++.
T Consensus 41 ~~~t~-IqIRlPdG~rl~~rF~~~~tl~~V~~fV-~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~ 117 (124)
T 1wj4_A 41 GPKAQ-LMLRYPDGKREQITLPEQAKLLALVKHV-QSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 117 (124)
T ss_dssp SCEEE-EEEECTTSCEEEEEEETTSCHHHHHHHH-HHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred CCcEE-EEEECCCCCEEEEEeCCCCCHHHHHHHH-Hhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence 35677 9999999999999999999999999999 555 445689999999999999 577899999999999999999
Q ss_pred eCch
Q 040408 175 YDDA 178 (235)
Q Consensus 175 ~~~~ 178 (235)
+.+.
T Consensus 118 ~~d~ 121 (124)
T 1wj4_A 118 ESGP 121 (124)
T ss_dssp ECCS
T ss_pred EccC
Confidence 7654
No 4
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=99.68 E-value=7.2e-17 Score=128.36 Aligned_cols=75 Identities=20% Similarity=0.316 Sum_probs=66.2
Q ss_pred CceeEEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCC-CCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEe
Q 040408 98 RKAVIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSR-TDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSY 175 (235)
Q Consensus 98 ~~~~~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~-~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~ 175 (235)
+.|. ||||||||..++.+|+.++||++||+|| ..++.+ ...+|.|++++|+++|.|+++||.|+||+|+++ ++.|
T Consensus 51 ~~t~-IqIRlpdG~rl~~rF~~~~tl~~v~~fV-~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psav-l~k~ 126 (127)
T 1s3s_G 51 PTTN-IQIRLADGGRLVQKFNHSHRISDIRLFI-VDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVI-VQRL 126 (127)
T ss_dssp CCCC-EEEEETTTTEEEEECCSSCBHHHHHHHH-HHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEE-EEEE
T ss_pred CcEE-EEEECCCCCEEEEEeCCCCCHHHHHHHH-HHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceE-EEEe
Confidence 4677 9999999999999999999999999999 676553 468999999999999988899999999999665 5566
No 5
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=99.64 E-value=6.5e-16 Score=119.64 Aligned_cols=79 Identities=19% Similarity=0.327 Sum_probs=69.2
Q ss_pred CCceeEEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeec-CCCcCccccCCCCceEEEEEe
Q 040408 97 FRKAVIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIK-DMSQDFYSAGFIPGAIVYFSY 175 (235)
Q Consensus 97 ~~~~~~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~-d~~~tL~elgL~Psall~~~~ 175 (235)
...|. ||||||||..++.+|+.++||++||+|| ... .....+|.|++++|++.|. |.++||.|+||+|+++|++.-
T Consensus 21 ~~~~~-IqiRlpdG~r~~rrF~~~~tl~~v~~fv-~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 21 EEVVT-VALRCPNGRVLRRRFFKSWNSQVLLDWM-MKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp SSEEE-EEEECTTSCEEEEEEESSSBTHHHHHHH-HHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred CCcEE-EEEECCCCCEEEEEeCCCCCHHHHHHHH-Hhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 45677 9999999999999999999999999999 543 3345789999999999996 678999999999999999986
Q ss_pred Cch
Q 040408 176 DDA 178 (235)
Q Consensus 176 ~~~ 178 (235)
.+.
T Consensus 98 ~~~ 100 (109)
T 2cr5_A 98 KEQ 100 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 6
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.41 E-value=3.6e-07 Score=66.80 Aligned_cols=73 Identities=10% Similarity=0.156 Sum_probs=59.2
Q ss_pred EEEECCCCceEEEE-eCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeec--CCCcCccccCCCCceEEEEEeCc
Q 040408 103 IRVRFPDNHTLEVN-FHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIK--DMSQDFYSAGFIPGAIVYFSYDD 177 (235)
Q Consensus 103 IRIRFPDg~~lq~~-F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~--d~~~tL~elgL~Psall~~~~~~ 177 (235)
||||.++|..+ .. |.+++|+++|.++| .+...-+...+.|...+|.+.+. |++++|.++|+.+++.|++.-..
T Consensus 3 i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I-~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~~ 78 (86)
T 2kzr_A 3 VRCKAKGGTHL-LQGLSSRTRLRELQGQI-AAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEEDQ 78 (86)
T ss_dssp EEEEETTEEEE-ECSCCTTCBHHHHHHHH-HHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCCS
T ss_pred EEEEcCCCCEE-eeecCCCCCHHHHHHHH-HHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeCC
Confidence 89999999866 45 99999999999999 55544344568888887777774 46789999999999999998543
No 7
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=97.27 E-value=0.0002 Score=51.83 Aligned_cols=71 Identities=20% Similarity=0.272 Sum_probs=55.0
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCc-eee-cCCCcCccccCCCCceEEEEE
Q 040408 102 IIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPK-RII-KDMSQDFYSAGFIPGAIVYFS 174 (235)
Q Consensus 102 ~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~-k~l-~d~~~tL~elgL~Psall~~~ 174 (235)
+||||-|||+.. ....+++|+++|++.| .+.+.-+...|.|+..+|. +.+ ...+.+|.++||....+|++.
T Consensus 6 ~lRvrs~~G~~R-i~v~~~~t~~~L~~~I-~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 6 IIRVQSPDGVKR-ITATKRETAATFLKKV-AKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCEEECSSEEEE-CCCCSSCCHHHHHHHH-HHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred EEEEECCCCCEE-EEcCCcChHHHHHHHH-HHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 399999999753 3377999999999999 6777665678888888654 444 235778999999888888764
No 8
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=97.12 E-value=0.003 Score=43.42 Aligned_cols=70 Identities=11% Similarity=0.116 Sum_probs=57.3
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEeC
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYD 176 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~~ 176 (235)
|.|+.++|..+...+.+++|+++|.+.| .+...-+.....|+. ..+.+.| +.+|.++|+...+.|++...
T Consensus 3 i~vk~~~g~~~~i~v~~~~tv~~lK~~i-~~~~~i~~~~q~L~~--~g~~L~d-~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 3a9j_A 3 IFVKTLTGKTITLEVEPSDTIENVKAKI-QDKEGIPPDQQRLIF--AGKQLED-GRTLSDYNIQRESTLHLVLR 72 (76)
T ss_dssp EEEEETTSCEEEEECCTTCBHHHHHHHH-HHHHCCCGGGEEEEE--TTEECCT-TCBTGGGTCCTTCEEEEEEC
T ss_pred EEEEcCCCCEEEEEECCCCcHHHHHHHH-HHHHCcCHHHeEEEE--CCeECCC-CCcHHHcCCCCCCEEEEEEe
Confidence 8899999999999999999999999999 566554455667765 3467755 68999999999999998764
No 9
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=97.09 E-value=0.004 Score=42.77 Aligned_cols=70 Identities=10% Similarity=0.202 Sum_probs=56.8
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEeC
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYD 176 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~~ 176 (235)
|+|+.++|..+...+.+++|+++|.+.| .+...-+.....|+. ..+.+.| +.+|.++|+.+.+.|++...
T Consensus 3 i~vk~~~g~~~~~~v~~~~tv~~lK~~i-~~~~~i~~~~q~L~~--~g~~L~d-~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 1ndd_A 3 IKVKTLTGKEIEIDIEPTDKVERIKERV-EEKEGIPPQQQRLIY--SGKQMND-EKTAADYKILGGSVLHLVLA 72 (76)
T ss_dssp EEEECTTSCEEEEECCTTCBHHHHHHHH-HHHHCCCGGGEEEEE--TTEECCT-TSBGGGGTCCTTCEEEEEEC
T ss_pred EEEECCCCCEEEEEECCCChHHHHHHHH-HHHHCcChHHEEEEE--CCEECCC-CCcHHHcCCCCCCEEEEEEe
Confidence 8899999999999999999999999999 565554445566764 3466654 68999999999999998763
No 10
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=96.97 E-value=0.0041 Score=43.86 Aligned_cols=72 Identities=11% Similarity=0.107 Sum_probs=58.9
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEeCch
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYDDA 178 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~~~~ 178 (235)
|.|+.++|..+...+.+++|+.+|.+.| .....-+.....|+. ..+.+.| +.+|.++|+...+.|++.....
T Consensus 6 i~vk~~~g~~~~~~v~~~~tV~~lK~~i-~~~~~i~~~~qrL~~--~g~~L~d-~~tL~~~~i~~~~~l~l~~r~~ 77 (85)
T 3mtn_B 6 IFVKTLTGKTITLEVEPSDTIENVKAKI-QDKEGIPPDQQRLIF--AGKQLED-GRTLSDYNIQKWSTLFLLLRLR 77 (85)
T ss_dssp EEEECTTSCEEEEEECTTCBHHHHHHHH-HHHHCCCGGGCEEEE--TTEECCT-TSBTGGGTCCTTCEEEEECCCC
T ss_pred EEEEcCCCCEEEEEECCCCCHHHHHHHH-HHHHCcChHHEEEEE--CCEECCC-CCCHHHcCCCCCCEEEEEEECc
Confidence 8999999999999999999999999999 566554555667764 3467755 6899999999999999987543
No 11
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=96.85 E-value=0.0092 Score=41.74 Aligned_cols=69 Identities=17% Similarity=0.205 Sum_probs=56.5
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEe
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSY 175 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~ 175 (235)
|.||.++|..+...+.+++|+.+|-+.| .....-+.....|+. ..+.+.| +.+|.++|+...+.|++..
T Consensus 7 i~Vk~~~g~~~~~~v~~~~tV~~lK~~i-~~~~gip~~~qrL~~--~G~~L~d-~~tL~~~~i~~~~~l~l~~ 75 (79)
T 3phx_B 7 ILVRNNKGRSSTYEVRLTQTVAHLKQQV-SGLEGVQDDLFWLTF--EGKPLED-QLPLGEYGLKPLSTVFMNL 75 (79)
T ss_dssp EEEECTTSCEEEEEECTTSBHHHHHHHH-HHHHTCCGGGEEEEE--TTEECCT-TSBGGGGTCCTTCEEEEEE
T ss_pred EEEEeCCCCEEEEEECCcChHHHHHHHH-HhhcCCCHHHEEEEE--CCEECCC-CCcHHHCCCCCCCEEEEEE
Confidence 8999999999999999999999999999 555544445566764 3467755 6899999999999999875
No 12
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=96.76 E-value=0.0089 Score=43.87 Aligned_cols=72 Identities=11% Similarity=0.093 Sum_probs=58.4
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEeCch
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYDDA 178 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~~~~ 178 (235)
|+||.++|..+...+.+++|+++|.+.| .....-+.....|+. ..+.+.| +.+|.++|+...+.|++.....
T Consensus 3 I~Vk~~~g~~~~~~v~~~~TV~~LK~~I-~~~~gi~~~~qrL~~--~Gk~L~D-~~tL~~~gi~~g~~i~l~~~~~ 74 (98)
T 1yx5_B 3 IFVKTLTGKTITLEVEPSDTIENVKAKI-QDKEGIPPDQQRLIF--AGKQLED-GRTLSDYNIQKESTLHLVLRLR 74 (98)
T ss_dssp EEEEETTSCEEEEECCTTCBHHHHHHHH-HHHTCCCGGGEEEEE--TTEECCT-TSBTGGGTCCTTCEEEEEECCC
T ss_pred EEEEeCCCCEEEEEECCCCcHHHHHHHH-HHHHCcChhhEEEEE--CCEECCC-CCCHHHcCCCCCCEEEEEEeCC
Confidence 8899999999999999999999999999 666554445566765 3467755 6899999999999999887543
No 13
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.74 E-value=0.009 Score=41.71 Aligned_cols=71 Identities=10% Similarity=0.100 Sum_probs=56.4
Q ss_pred eeEEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEe
Q 040408 100 AVIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSY 175 (235)
Q Consensus 100 ~~~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~ 175 (235)
.. |+|+.++|..+...+.+++|+++|.+.| .....-+.....|+.. .+.+.| +.+|.++|+...+.|++..
T Consensus 8 m~-i~vk~~~g~~~~~~v~~~~tV~~LK~~i-~~~~~i~~~~qrL~~~--gk~L~d-~~tL~~~~i~~g~~i~l~~ 78 (81)
T 2dzi_A 8 MQ-LTVKALQGRECSLQVPEDELVSTLKQLV-SEKLNVPVRQQRLLFK--GKALAD-GKRLSDYSIGPNSKLNLVV 78 (81)
T ss_dssp EE-EEEEETTSCEEEEEECSSCBHHHHHHHH-HHHTCCCTTTCEEEET--TEECCT-TSBGGGGTCCSSBCCEEEC
T ss_pred EE-EEEEeCCCCEEEEEECCCCcHHHHHHHH-HHHHCcCHHHEEEEEC--CeECCC-CCcHHHcCCCCCCEEEEEE
Confidence 44 8899899998899999999999999999 5655544556667653 466654 6899999999999888764
No 14
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=96.72 E-value=0.0084 Score=41.45 Aligned_cols=68 Identities=21% Similarity=0.197 Sum_probs=54.9
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEe
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSY 175 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~ 175 (235)
|+|+. +|..+...+.+++|+++|.+.| .....-+.....|+. ..+.+.| +.+|.++|+...+.|++..
T Consensus 7 i~vk~-~g~~~~~~v~~~~tV~~LK~~i-~~~~~i~~~~qrL~~--~gk~L~d-~~tL~~~~i~~g~~i~l~~ 74 (77)
T 2bwf_A 7 IHIKS-GQDKWEVNVAPESTVLQFKEAI-NKANGIPVANQRLIY--SGKILKD-DQTVESYHIQDGHSVHLVK 74 (77)
T ss_dssp EEEEE-TTEEEEEEECTTCBHHHHHHHH-HHHHCCCGGGEEEEE--TTEECCT-TSBTGGGTCCTTCEEEEEE
T ss_pred EEEEE-CCEEEEEEECCCCcHHHHHHHH-HHHhCCCHHHEEEEE--CCeEcCC-CCCHHHcCCCCCCEEEEEE
Confidence 78888 8888899999999999999999 565554455566764 3467755 5899999999999999875
No 15
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=96.66 E-value=0.0089 Score=43.43 Aligned_cols=72 Identities=11% Similarity=0.093 Sum_probs=58.3
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEeCch
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYDDA 178 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~~~~ 178 (235)
|.|+..+|..+...+.+++|+.+|.+.| .....-+.....|+. -.+.+.| +.+|.++|+.....|++.....
T Consensus 4 i~vk~~~g~~~~~~v~~~~TV~~LK~~i-~~~~gip~~~qrL~~--~G~~L~d-~~tL~~~~i~~~~~i~l~~r~~ 75 (96)
T 3k9o_B 4 IFVKTLTGKTITLEVEPSDTIENVKAKI-QDKEGIPPDQQRLIF--AGKQLED-GRTLSDYNIQKESTLHLVLRLR 75 (96)
T ss_dssp EEEEETTCCEEEEECCTTCBHHHHHHHH-HHHHCCCGGGEEEEE--TTEECCT-TSBTGGGTCCTTCEEEEEECCC
T ss_pred EEEEeCCCCEEEEEECCCCCHHHHHHHH-HhhhCCChhHEEEEE--CCEECCC-CCcHHHcCCCCCCEEEEEEEcC
Confidence 8899999999999999999999999999 566554455567764 3467754 6799999999999999987543
No 16
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=96.58 E-value=0.014 Score=41.89 Aligned_cols=72 Identities=11% Similarity=0.133 Sum_probs=57.3
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEeCchh
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYDDAY 179 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~~~~~ 179 (235)
|.|+..+|..+...+.+++|+.+|.+.| .....-+.....|+. -.+.|.| +.+|.++|+ ...+|++......
T Consensus 8 i~Vk~~~g~~~~~~v~~~~tV~~lK~~i-~~~~gip~~~qrLi~--~Gk~L~d-~~tL~~~~i-~g~~i~l~~~~~~ 79 (90)
T 4dwf_A 8 VLVKTLDSQTRTFIVGAQMNVKEFKEHI-AASVSIPSEKQRLIY--QGRVLQD-DKKLQEYNV-GGKVIHLVERAPP 79 (90)
T ss_dssp EEEEETTCCEEEEEEETTCBHHHHHHHH-HHHHTCCGGGEEEEE--TTEECCT-TSBGGGGTC-TTEEEEEEECCCC
T ss_pred EEEEcCCCCEEEEEECCCCCHHHHHHHH-HHHhCCCHHHEEEEE--CCeECCC-CCCHHHcCC-CCcEEEEEecCCC
Confidence 8999999999999999999999999999 555544444556664 3467755 789999999 8899999876543
No 17
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=96.56 E-value=0.011 Score=41.70 Aligned_cols=72 Identities=13% Similarity=0.111 Sum_probs=58.9
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEeCch
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYDDA 178 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~~~~ 178 (235)
|.|+.++|..+...+.+++|+.+|.+.| .....-+.....|+. -.+.+.| +.+|.++|+.....|++.....
T Consensus 6 i~vk~~~g~~~~~~v~~~~tV~~lK~~i-~~~~~ip~~~qrL~~--~g~~L~d-~~tL~~~~i~~~~~i~l~~rl~ 77 (85)
T 3n3k_B 6 IVVKTLMGRTIILEVEPSDTIENVKAKI-QDKEGIPPDQQRLIF--AGKQLED-GRTLSDYNIHNHSALYLLLKLR 77 (85)
T ss_dssp EEEECGGGCEEEEECCTTCBHHHHHHHH-HHHHCCCGGGEEEEE--TBEECCT-TCBTTTTTCCTTCEEEEEECCC
T ss_pred EEEEeCCCCEEEEEECCCCcHHHHHHHH-HHHHCCCHHHEEEEE--CCeECCC-CCCHHHCCCCCCCEEEEEEecc
Confidence 8999999999999999999999999999 566554555677765 3466655 6799999999999999987654
No 18
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=96.53 E-value=0.013 Score=41.57 Aligned_cols=71 Identities=10% Similarity=0.209 Sum_probs=56.9
Q ss_pred eeEEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEe
Q 040408 100 AVIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSY 175 (235)
Q Consensus 100 ~~~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~ 175 (235)
.. |.|+..+|..+...+.+++|+.+|.+.| .....-+.....|+.. .+.+.| +.+|.++|+.....|++..
T Consensus 13 m~-i~vk~~~g~~~~~~v~~~~tV~~lK~~i-~~~~gip~~~qrL~~~--G~~L~d-~~tL~~~~i~~~~~i~l~~ 83 (88)
T 3dbh_I 13 ML-IKVKTLTGKEIEIDIEPTDKVERIKERV-EEKEGIPPQQQRLIYS--GKQMND-EKTAADYKILGGSVLHLVL 83 (88)
T ss_dssp EE-EEEECTTSCEEEEEECTTCBHHHHHHHH-HHHHCCCGGGCCEEET--TEECCT-TSBGGGGTCCTTCEEEECC
T ss_pred EE-EEEEcCCCCEEEEEECCCCCHHHHHHHH-HHHHCcCHHHEEEEEC--CeECCC-CCcHHHcCCCCCCEEEEEE
Confidence 45 9999999999999999999999999999 5655544445566643 366655 7899999999999999864
No 19
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=96.51 E-value=0.017 Score=41.71 Aligned_cols=73 Identities=11% Similarity=0.082 Sum_probs=57.7
Q ss_pred CceeEEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEe
Q 040408 98 RKAVIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSY 175 (235)
Q Consensus 98 ~~~~~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~ 175 (235)
.... |.|+..+|..+...+.+++|+.+|.+.| .....-+.....|+.. .+.+.| +.+|.++|+.....|++..
T Consensus 16 ~~m~-i~Vk~~~g~~~~l~v~~~~TV~~LK~~I-~~~~gip~~~qrL~~~--Gk~L~D-~~tL~~~gi~~g~~i~l~~ 88 (91)
T 3v6c_B 16 GSMQ-IFVNTLTGTHITLEVEPSDTIENVKAKI-QDKEGIPPDQQRLIFA--GKQLED-GRTLSDYNIQKESTLHLVL 88 (91)
T ss_dssp CSEE-EEEECTTSCEEEEEECTTCBHHHHHHHH-HHHHCCCGGGCEEEET--TEECCT-TCBTGGGTCCTTCEEEEEC
T ss_pred CeEE-EEEEeCCCCEEEEEECCCCCHHHHHHHH-HhhhCCChhhEEEEEC--CeECCC-cCcHHHCCCCCCCEEEEEE
Confidence 3455 9999999999999999999999999999 5655544445566643 366655 6899999999999998864
No 20
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=96.48 E-value=0.026 Score=41.36 Aligned_cols=74 Identities=22% Similarity=0.241 Sum_probs=58.3
Q ss_pred CceeEEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEeC
Q 040408 98 RKAVIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYD 176 (235)
Q Consensus 98 ~~~~~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~~ 176 (235)
.... |.||.++| .+...+.+++|+.+|.+.| .....-+.....|+. ..+.+.|.+.+|.++|+.+...|++...
T Consensus 14 ~~~~-I~Vk~~~~-~~~l~v~~~~TV~~LK~~I-~~~~gip~~~QrLi~--~Gk~L~D~~~tL~~ygI~~gstl~lv~r 87 (94)
T 2kan_A 14 RKIH-VTVKFPSK-QFTVEVDRTETVSSLKDKI-HIVENTPIKRMQLYY--SGIELADDYRNLNEYGITEFSEIVVFLK 87 (94)
T ss_dssp CCEE-EEEECSSC-EEEEEECTTCBHHHHHHHH-HHHSSSCTTTEEEEE--TTEEECCTTSBHHHHTCCTTEEEEEEEC
T ss_pred CCEE-EEEEcCCc-EEEEEECCCCcHHHHHHHH-HHHHCcCHHHEEEEE--CCEECCCCcccHHHCCCCCCCEEEEEEe
Confidence 3455 89999998 7888999999999999999 565544455666764 4577766448999999999999998764
No 21
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.45 E-value=0.017 Score=43.59 Aligned_cols=70 Identities=11% Similarity=0.075 Sum_probs=56.5
Q ss_pred eeEEEEECCC----CceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEE
Q 040408 100 AVIIRVRFPD----NHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFS 174 (235)
Q Consensus 100 ~~~IRIRFPD----g~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~ 174 (235)
+. |+|+.|+ +..+...+.+++|+.+|-+-| .+...-+.....|... .+++.| +.||.+.|+.+.+.|++.
T Consensus 16 at-i~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI-~~k~gip~~qQrLI~~--GKiL~D-~~TL~~y~I~~gsti~vl 89 (100)
T 1wju_A 16 AT-IEVFLPPRLKKDRKNLLETRLHITGRELRSKI-AETFGLQENYIKIVIN--KKQLQL-GKTLEEQGVAHNVKAMVL 89 (100)
T ss_dssp EE-EEEECCTTTCCSSSEEEEEESSSBHHHHHHHH-HHHTTCCSTTCEEEET--TEECCT-TSBHHHHTCCSSEEEEEE
T ss_pred EE-EEEEecCCCCCCcEEEEEeCCcCHHHHHHHHH-HHHHCcCHHHeEEEeC--CeECCC-CCcHHHcCCCCCCEEEEE
Confidence 45 9999999 778999999999999999999 6665545556677643 578755 689999999999888665
No 22
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.44 E-value=0.017 Score=40.97 Aligned_cols=74 Identities=12% Similarity=0.096 Sum_probs=59.3
Q ss_pred ceeEEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEeCc
Q 040408 99 KAVIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYDD 177 (235)
Q Consensus 99 ~~~~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~~~ 177 (235)
... |.|+..+|..+...+.+++|+.+|.+.| .....-+.....|+. ..+.+.| +.+|.++|+...+.|++....
T Consensus 7 ~m~-i~Vk~~~g~~~~~~v~~~~tV~~lK~~i-~~~~gi~~~~qrL~~--~Gk~L~d-~~tL~~~~i~~g~~i~l~~~~ 80 (87)
T 1wh3_A 7 GIQ-VFVKNPDGGSYAYAINPNSFILGLKQQI-EDQQGLPKKQQQLEF--QGQVLQD-WLGLGIYGIQDSDTLILSKKK 80 (87)
T ss_dssp SEE-EEEEETTTEEEEEEECSSSBHHHHHHHH-HHHTCCCTTTEEEEE--TTEECCS-SSBHHHHTCCTTEEEEEEECS
T ss_pred CEE-EEEEcCCCCEEEEEeCCCChHHHHHHHH-HHHhCCChHHEEEEE--CCEEccC-CCCHHHCCCCCCCEEEEEEec
Confidence 345 8999999999999999999999999999 666554555667764 3466654 689999999999999998754
No 23
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=96.31 E-value=0.022 Score=41.81 Aligned_cols=69 Identities=10% Similarity=0.086 Sum_probs=56.4
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEe
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSY 175 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~ 175 (235)
|.|+..+|..+...+.+++|+.+|.+.| .....-+.....|+. -.+.+.| +.+|.++|+.....|++..
T Consensus 25 I~Vk~~~g~~~~l~v~~~~TV~~LK~~I-~~~~gip~~~qrLi~--~Gk~L~D-~~tL~~~~i~~g~~i~l~~ 93 (98)
T 4hcn_B 25 IFVKTLTGKTITLEVESSDTIDNVKSKI-QDKEGIPPDQQRLIF--AGKQLED-GRTLSDYNIQKESTLHLVL 93 (98)
T ss_dssp EEEEETTCCEEEEECCTTCBHHHHHHHH-HHHHCCCGGGCEEEE--TTEECCT-TCBSGGGTCCTTEEEEEEC
T ss_pred EEEEeCCCCEEEEEECCCCcHHHHHHHH-HHHhCCChhHEEEEE--CCEECCC-CCcHHHCCCCCCCEEEEEE
Confidence 8999999999999999999999999999 565554445567764 3466754 6899999999999999875
No 24
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=96.29 E-value=0.022 Score=41.02 Aligned_cols=72 Identities=10% Similarity=0.179 Sum_probs=57.9
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEeCch
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYDDA 178 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~~~~ 178 (235)
|.|+..+|..+...+.+++|+.+|-+.| .....-+.....|+.. .+.+.| +.+|.++|+.....|++.....
T Consensus 3 I~Vk~~~g~~~~l~v~~~~TV~~LK~~I-~~~~gip~~~qrLi~~--Gk~L~D-~~tL~~~~i~~g~~l~l~~rl~ 74 (88)
T 4fbj_B 3 IKVKTLTGKEIEIDIEPTDKVERIKERV-EEKEGIPPQQQRLIYS--GKQMND-EKTAADYKILGGSVLHLVLALR 74 (88)
T ss_dssp EEEEETTCCEEEEECCTTCBHHHHHHHH-HHHHCCCGGGCEEEET--TEECCT-TSBTTTTTCCTTCEEEEECBCC
T ss_pred EEEEcCCCCEEEEEECCCCCHHHHHHHH-HHHHCcChhHEEEEEC--CeECCC-CCcHHHcCCCCCCEEEEEEECC
Confidence 8899999999999999999999999999 5555544445566643 467755 7899999999999999987543
No 25
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=96.28 E-value=0.027 Score=40.21 Aligned_cols=70 Identities=11% Similarity=0.138 Sum_probs=55.3
Q ss_pred eeEEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEe
Q 040408 100 AVIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSY 175 (235)
Q Consensus 100 ~~~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~ 175 (235)
.. |.|+..+|..+...+.+++|+.+|.+.| .....-+...-.|+. -.+.+.| +.+|.++|+ ....||+..
T Consensus 18 m~-i~Vk~~~g~~~~~~v~~~~tV~~lK~~i-~~~~gip~~~qrLi~--~Gk~L~D-~~tL~~~~i-~g~~i~lv~ 87 (88)
T 4eew_A 18 LE-VLVKTLDSQTRTFIVGAQMNVKEFKEHI-AASVSIPSEKQRLIY--QGRVLQD-DKKLQEYNV-GGKVIHLVE 87 (88)
T ss_dssp EE-EEEEETTSCEEEEEEETTCBHHHHHHHH-HHHHTCCGGGEEEEE--TTEECCT-TSBGGGGTC-TTEEEEEEE
T ss_pred EE-EEEEcCCCCEEEEEECCCCCHHHHHHHH-HHHhCCCHHHEEEEE--CCEECCC-CCcHHHcCC-CCcEEEEEE
Confidence 45 8999999999999999999999999999 555544444456664 3467765 789999999 888988763
No 26
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.26 E-value=0.023 Score=41.37 Aligned_cols=72 Identities=13% Similarity=0.187 Sum_probs=57.2
Q ss_pred eeEEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEeCch
Q 040408 100 AVIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYDDA 178 (235)
Q Consensus 100 ~~~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~~~~ 178 (235)
.. |.|+..+|..+...+.+++|+.+|.+.| .... .....|+. ..+.|.|.+.+|.++|+.....|++.....
T Consensus 8 m~-i~Vk~~~g~~~~~~v~~~~TV~~LK~~i-~~~~---~~~qrLi~--~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~ 79 (95)
T 1wia_A 8 IN-VRLKFLNDTEELAVARPEDTVGTLKSKY-FPGQ---ESQMKLIY--QGRLLQDPARTLSSLNITNNCVIHCHRSPP 79 (95)
T ss_dssp EE-EEEEETTTEEEEEEECSSSBHHHHHHHH-SSST---TTTCEEEE--TTEECCCSSCBTTTTTCCTTEEEEEECCCC
T ss_pred EE-EEEEeCCCCEEEEEECCCCcHHHHHHHH-HhhC---cCcEEEEE--CCEEccCCcCCHHHcCCCCCCEEEEEECCC
Confidence 44 8899899999999999999999999999 4543 34456654 357777755899999999999999987543
No 27
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=96.18 E-value=0.026 Score=44.38 Aligned_cols=73 Identities=10% Similarity=0.132 Sum_probs=53.5
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCC-CCCCeEEEeCCCce---------------------------ee
Q 040408 102 IIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSR-TDVPFYLYTAPPKR---------------------------II 153 (235)
Q Consensus 102 ~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~-~~~~F~L~~t~P~k---------------------------~l 153 (235)
.|||++|||.+....-..+.|++.+...| ..-+.- ....|.|...++.. .+
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~I-c~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL 91 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTI-CARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKL 91 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHH-HHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHH-HHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHh
Confidence 39999999999988888899999999999 555542 23458888765411 11
Q ss_pred --------cCCCcCccccCCCCceEEEEEe
Q 040408 154 --------KDMSQDFYSAGFIPGAIVYFSY 175 (235)
Q Consensus 154 --------~d~~~tL~elgL~Psall~~~~ 175 (235)
-|.+.||.|.|+.+..+|.+.+
T Consensus 92 ~~dd~~~WLD~srtL~EQGI~e~~tllLRr 121 (128)
T 2kc2_A 92 HTDDELNWLDHGRTLREQGVEEHETLLLRR 121 (128)
T ss_dssp CCSSSEEEECSSSCHHHHTCCTTSEEEEEE
T ss_pred cccCCCCcccCCCcHHHcCCCCCCEEEEEE
Confidence 1446788888888887777764
No 28
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=96.17 E-value=0.02 Score=41.18 Aligned_cols=72 Identities=17% Similarity=0.174 Sum_probs=56.8
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEeCch
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYDDA 178 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~~~~ 178 (235)
|.||..+|..+...+.+++|+.+|.+.| .....-+.....|+. ..+.+.| +.+|.++|+...+.|++.....
T Consensus 7 I~Vk~~~g~~~~~~v~~~~TV~~LK~~I-~~~~gip~~~qrL~~--~Gk~L~D-~~tL~~~~I~~g~~i~l~~~~~ 78 (88)
T 2hj8_A 7 ILVRNNKGRSSTYEVRLTQTVAHLKQQV-SGLEGVQDDLFWLTF--EGKPLED-QLPLGEYGLKPLSTVFMNLRLR 78 (88)
T ss_dssp EEEEETTSCEEEEEEESSSBHHHHHHHH-HHHTCSCTTTEEEES--SSSCCCT-TSBHHHHHCSTTCEEEEEEC--
T ss_pred EEEECCCCCEEEEEECCCCcHHHHHHHH-HHHhCCChhHEEEEE--CCEECCC-CCcHHHcCCCCCCEEEEEEEcC
Confidence 8899999998999999999999999999 566554455566764 3456654 6899999999999999987544
No 29
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.16 E-value=0.063 Score=39.12 Aligned_cols=72 Identities=13% Similarity=0.155 Sum_probs=56.6
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhc---CCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEeCch
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVL---SRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYDDA 178 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L---~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~~~~ 178 (235)
|.|+..+|..+...+.+++|+.+|.+.| ...+ .-+.....|+. ..+.+.| +.+|.++|+...+.|++.....
T Consensus 3 I~Vk~~~g~~~~~~v~~~~TV~~LK~~I-~~~~~~~gip~~~qrLi~--~Gk~L~D-~~tL~~ygI~~g~~i~l~~~~~ 77 (95)
T 1uel_A 3 VTLKTLQQQTFKIDIDPEETVKALKEKI-ESEKGKDAFPVAGQKLIY--AGKILND-DTALKEYKIDEKNFVVVMVTKP 77 (95)
T ss_dssp EEEEETTCCEEEEECCTTSBHHHHHHHH-HHHHCTTTCCTTTEEEEE--TTEECCT-TSBGGGGTCCSSSEEEEEESSC
T ss_pred EEEEeCCCCEEEEEECCCCHHHHHHHHH-HhhcccCCCChhhEEEEE--CCEECCC-cCcHHHCCCCCCCEEEEEEeCC
Confidence 7899999999999999999999999999 5552 22344566664 3467755 6899999999999999887543
No 30
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=96.14 E-value=0.043 Score=41.30 Aligned_cols=72 Identities=13% Similarity=0.114 Sum_probs=58.3
Q ss_pred eeEEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEeC
Q 040408 100 AVIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYD 176 (235)
Q Consensus 100 ~~~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~~ 176 (235)
.. |+|+..+|..+...+.+++|+.+|.+.| .....-+.....|+.. .+.+.| +.+|.++|+...+.|++...
T Consensus 36 m~-I~Vk~~~g~~~~l~v~~~~TV~~LK~~I-~~~~gip~~~qrLi~~--Gk~L~D-~~tL~~~gI~~gs~I~l~~r 107 (111)
T 2ojr_A 36 MQ-IFVKTLTGKTITLEVEPSDTIENVKAKI-QDKEGIPPDQQRLIFA--GKQLED-GRTLSDYNIQKESTLHLVLR 107 (111)
T ss_dssp EE-EEEECSSSCEEEEEECTTCBHHHHHHHH-HHHHCCCTTTEEEEET--TEECCS-SCBTTTTTCCTTCEEEEEEC
T ss_pred EE-EEEEcCCCCEEEEEeCCCCCHHHHHHHH-HHHHCcCcccEEEEEC--CEECCC-CCcHHHcCCCCCCEEEEEEe
Confidence 45 8999999999999999999999999999 6665545556777653 466755 78999999999999998753
No 31
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=96.13 E-value=0.045 Score=38.53 Aligned_cols=70 Identities=14% Similarity=0.129 Sum_probs=55.1
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhc---CCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEeC
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVL---SRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYD 176 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L---~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~~ 176 (235)
|.|+..+|..+...+.+++|+.+|.+.| ...+ .-+.....|+. ..+.+.| +.+|.++|+...+.|++...
T Consensus 8 i~vk~~~g~~~~~~v~~~~TV~~lK~~i-~~~~~~~gip~~~qrLi~--~Gk~L~D-~~tL~~~~i~~g~~i~l~~~ 80 (85)
T 2wyq_A 8 ITLKTLQQQTFKIRMEPDETVKVLKEKI-EAEKGRDAFPVAGQKLIY--AGKILSD-DVPIRDYRIDEKNFVVVMVT 80 (85)
T ss_dssp EEEEETTSCEEEEEECTTSBHHHHHHHH-HHHHCTTTCCGGGEEEEE--TTEECCT-TSBGGGGCCCTTSEEEEEEC
T ss_pred EEEEECCCCEEEEEECCCCCHHHHHHHH-HhhccccCCCHHHeEEEE--CCEECcC-CCCHHHcCCCCCCEEEEEEc
Confidence 8899999999999999999999999999 5542 22334556654 3467755 68999999999999998764
No 32
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.12 E-value=0.031 Score=41.86 Aligned_cols=72 Identities=17% Similarity=0.275 Sum_probs=56.7
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEeCch
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYDDA 178 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~~~~ 178 (235)
|.|+..+|..+...+.+++|+.+|.+.| .....-+...-.|+. -.+.|.| +.+|.++|+.....|++.....
T Consensus 4 I~Vk~~~g~~~~l~v~~~~TV~~LK~~I-~~~~gip~~~QrLi~--~Gk~L~D-~~tL~~~~i~~g~~i~lv~~~~ 75 (106)
T 3m62_B 4 LTFKNFKKEKVPLDLEPSNTILETKTKL-AQSISCEESQIKLIY--SGKVLQD-SKTVSECGLKDGDQVVFMVSQK 75 (106)
T ss_dssp EEEECTTCCEEEECCCTTSBHHHHHHHH-HHTTTSCGGGCEEEE--TTEECCT-TSBTTTTTCCTTCEEEEECCC-
T ss_pred EEEEeCCCCEEEEEECCCCcHHHHHHHH-HHHHCCChhhEEEEE--CCEECCC-cCCHHHcCCCCCCEEEEEEcCC
Confidence 7899999999999999999999999999 555443334456654 3467765 6899999999999999987543
No 33
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.10 E-value=0.043 Score=39.08 Aligned_cols=74 Identities=12% Similarity=0.138 Sum_probs=58.1
Q ss_pred eeEEEEECCCC-ceEEE-EeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEeCc
Q 040408 100 AVIIRVRFPDN-HTLEV-NFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYDD 177 (235)
Q Consensus 100 ~~~IRIRFPDg-~~lq~-~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~~~ 177 (235)
.. |.||..+| ..+.. .+.+++|+.+|.+.| .....-+.....|+.. .+.+.| +.+|.++|+...+.|++....
T Consensus 8 m~-i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i-~~~~gip~~~qrL~~~--gk~L~d-~~tL~~~~i~~g~~i~l~~~~ 82 (89)
T 1wy8_A 8 MW-IQVRTIDGSKTCTIEDVSRKATIEELRERV-WALFDVRPECQRLFYR--GKQLEN-GYTLFDYDVGLNDIIQLLVRP 82 (89)
T ss_dssp EE-EEEEETTCSCEEEEEEECTTCBHHHHHHHH-HHHSCCCTTTEEEEET--TEECCS-SSBHHHHTCCTTCEEEEEECC
T ss_pred EE-EEEEECCCCceEEEEecCCCCCHHHHHHHH-HHHHCcChhhEEEEEC--CeECCC-CCCHHHCCCCCCCEEEEEEeC
Confidence 44 88999999 68888 499999999999999 6665545556677653 466654 689999999999999998754
Q ss_pred h
Q 040408 178 A 178 (235)
Q Consensus 178 ~ 178 (235)
.
T Consensus 83 ~ 83 (89)
T 1wy8_A 83 D 83 (89)
T ss_dssp C
T ss_pred C
Confidence 3
No 34
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=96.01 E-value=0.043 Score=38.02 Aligned_cols=69 Identities=12% Similarity=0.139 Sum_probs=54.3
Q ss_pred EEEECCCCceE-EEE-eCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEe
Q 040408 103 IRVRFPDNHTL-EVN-FHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSY 175 (235)
Q Consensus 103 IRIRFPDg~~l-q~~-F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~ 175 (235)
|.|+..+|..+ ... +.+++|+.+|.+.| .....-+.....|+. ..+.+.| +.+|.++|+...+.|++..
T Consensus 5 i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i-~~~~gip~~~qrL~~--~g~~L~d-~~tL~~~~i~~g~~i~l~~ 75 (78)
T 2faz_A 5 IQVRTMDGRQTHTVDSLSRLTKVEELRRKI-QELFHVEPGLQRLFY--RGKQMED-GHTLFDYEVRLNDTIQLLV 75 (78)
T ss_dssp EEEEETTSSCEEEEEEECTTCBHHHHHHHH-HHHHCCCGGGEEEEE--TTEECCT-TCBTTTTTCCTTCEEEEEE
T ss_pred EEEEECCCCEEEEEeccCCCCCHHHHHHHH-HHHHCcChhhEEEEE--CCEECCC-CCCHHHcCCCCCCEEEEEE
Confidence 88999999775 787 99999999999999 565544445566664 3466654 6899999999999999875
No 35
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=95.89 E-value=0.05 Score=41.02 Aligned_cols=72 Identities=11% Similarity=0.104 Sum_probs=57.8
Q ss_pred eeEEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEeC
Q 040408 100 AVIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYD 176 (235)
Q Consensus 100 ~~~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~~ 176 (235)
-. |.|+..+|..+...+.+++|+.+|-..| .....-+.....|+. ..+.+.| +.+|.++|+.....|++...
T Consensus 36 m~-I~Vk~~~G~~~~l~v~~~~TV~~LK~~I-~~~~gip~~~QrLi~--~Gk~L~D-~~tL~~~gI~~gs~I~l~~r 107 (111)
T 3vdz_A 36 MQ-IFVKTLTGKTITLEVEPSDTIENVKAKI-QDKEGIPPDQQRLIF--AGKQLED-GRTLSDYNIQKESTLHLVLR 107 (111)
T ss_dssp EE-EEEECSSSCEEEEEECTTCBHHHHHHHH-HHHHCCCGGGEEEEE--TTEECCT-TSBTTTTTCCTTCEEEEEEC
T ss_pred EE-EEEEeCCCCEEEEEeCCCCCHHHHHHHH-HHHhCCChHHEEEEE--CCEECCC-CCcHHHCCCCCCCEEEEEEe
Confidence 44 8999999999999999999999999999 565554445566764 3467755 67999999999999998763
No 36
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=95.89 E-value=0.036 Score=38.62 Aligned_cols=70 Identities=9% Similarity=0.073 Sum_probs=56.0
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEeC
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYD 176 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~~ 176 (235)
|.|+..+|..+.....+++|+.+|.+.| .+...-+.....|+. ..+.+.| +.||.++|+.....|++...
T Consensus 6 i~vk~~~g~~~~~~v~~~~tv~~lk~~i-~~~~gi~~~~qrL~~--~G~~L~d-~~tl~~~~i~~~~~i~l~~~ 75 (79)
T 2uyz_B 6 LKVIGQDSSEIHFKVKMTTHLKKLKESY-CQRQGVPMNSLRFLF--EGQRIAD-NHTPKELGMEEEDVIEVYQE 75 (79)
T ss_dssp EEEECTTCCEEEEEEETTSCTHHHHHHH-HHHHTCCGGGEEEEE--TTEECCT-TCCHHHHTCCTTEEEEEEEC
T ss_pred EEEECCCCCEEEEEECCCChHHHHHHHH-HHHHCCCcccEEEEE--CCEEeCC-CCCHHHcCCCCCCEEEEEEe
Confidence 8899999999999999999999999999 555444444566654 3467755 58999999999999998753
No 37
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.87 E-value=0.059 Score=39.48 Aligned_cols=74 Identities=18% Similarity=0.267 Sum_probs=57.6
Q ss_pred EEEECC---CCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeC---CC-cee-ecCCCcCccccCCCCceEEEEE
Q 040408 103 IRVRFP---DNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTA---PP-KRI-IKDMSQDFYSAGFIPGAIVYFS 174 (235)
Q Consensus 103 IRIRFP---Dg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t---~P-~k~-l~d~~~tL~elgL~Psall~~~ 174 (235)
|+|+.| +|..++..|..+.|+++|-..| .....-+.....|+.- .| ... +.+++.+|...|+.+...|++.
T Consensus 12 l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i-~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~ 90 (97)
T 1wjn_A 12 LKIKCSNQPERQILEKQLPDSMTVQKVKGLL-SRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVR 90 (97)
T ss_dssp EEEEESSCSSSCCEEEEEETTSBHHHHHHHH-HTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEE
T ss_pred EEEEecCCCCCcEEEEECCCCCCHHHHHHHH-HHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEE
Confidence 666765 7789999999999999999999 6776655555666543 23 222 4577889999999999999999
Q ss_pred eCc
Q 040408 175 YDD 177 (235)
Q Consensus 175 ~~~ 177 (235)
+..
T Consensus 91 d~~ 93 (97)
T 1wjn_A 91 WSG 93 (97)
T ss_dssp CCS
T ss_pred ecC
Confidence 854
No 38
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=95.84 E-value=0.048 Score=39.18 Aligned_cols=70 Identities=11% Similarity=0.132 Sum_probs=56.6
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEeC
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYD 176 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~~ 176 (235)
|-|+-.+|..+...+.+++|+++|.+.| .+...-+.....|+. ..+.+.| +.+|.++|+.+.+.|++...
T Consensus 12 i~v~~~~G~~~~l~v~~~~TV~~LK~~I-~~~~gip~~~qrL~~--~Gk~L~D-~~tL~~~gi~~g~~i~l~~r 81 (88)
T 1sif_A 12 LFIKTLTGKTFTVEMEPSDTIENLKAKI-QDKEGIPPDQQRLIF--AGKQLED-GRTLSDYNIQKESTLHLVLR 81 (88)
T ss_dssp EEEEETTSCEEEEECCTTSBHHHHHHHH-HHHHCCCGGGCEEEE--TTEECCT-TSBSGGGTCCTTCEEEEEC-
T ss_pred EEEEeCCCCEEEEEECCCChHHHHHHHH-HHHHCcChhhEEEEE--CCEECCC-CCcHHHcCCCCCCEEEEEEe
Confidence 7888999999999999999999999999 666554455566764 3467755 68999999999999998764
No 39
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=95.83 E-value=0.053 Score=41.04 Aligned_cols=74 Identities=15% Similarity=0.191 Sum_probs=57.7
Q ss_pred ceeEEEEECCC----------CceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCc
Q 040408 99 KAVIIRVRFPD----------NHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPG 168 (235)
Q Consensus 99 ~~~~IRIRFPD----------g~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Ps 168 (235)
... |.|++|+ |..+...+.+++|+.+|.+.| .....-+.....|+.. .+.+.| +.+|.++|+...
T Consensus 25 ~i~-l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I-~~~~gip~~~QrL~~~--Gk~L~D-~~tL~~y~i~~g 99 (115)
T 1we7_A 25 PVS-IKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKI-HEATGMPAGKQKLQYE--GIFIKD-SNSLAYYNMASG 99 (115)
T ss_dssp CEE-EEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHH-HHHSSCCTTTEEEEET--TEEECT-TSBHHHHTCCSS
T ss_pred CEE-EEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHH-HHHHCCChHHEEEEEC--CEECCC-CCCHHHCCCCCC
Confidence 355 9999996 567888999999999999999 6665544555667653 467754 689999999999
Q ss_pred eEEEEEeCc
Q 040408 169 AIVYFSYDD 177 (235)
Q Consensus 169 all~~~~~~ 177 (235)
+.|++....
T Consensus 100 ~~i~lv~rl 108 (115)
T 1we7_A 100 AVIHLALKE 108 (115)
T ss_dssp CEEEEEECC
T ss_pred CEEEEEEEc
Confidence 999998643
No 40
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.79 E-value=0.043 Score=40.64 Aligned_cols=73 Identities=14% Similarity=0.110 Sum_probs=56.2
Q ss_pred EEEECCCC----ceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEeCch
Q 040408 103 IRVRFPDN----HTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYDDA 178 (235)
Q Consensus 103 IRIRFPDg----~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~~~~ 178 (235)
|.|+.++| ..+...+.+++|+.+|.+.| .....-+.....|+.. .+.+.|+.++|.++|+.....|++.....
T Consensus 10 I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I-~~~~gip~~~qrL~~~--gk~L~D~~~tL~~ygI~~g~~l~l~~~~~ 86 (102)
T 1v5o_A 10 ITVYCVRRDLTEVTFSLQVNPDFELSNFRVLC-ELESGVPAEEAQIVYM--EQLLTDDHCSLGSYGLKDGDMVVLLQKDN 86 (102)
T ss_dssp EEEEECCCCCCCCEEEEEECTTCBHHHHHHHH-HHHTCCCGGGBCEEET--TEEECCSSSBHHHHTCCTTEEEEECBCCC
T ss_pred EEEEECCCCcCceEEEEEcCCCCCHHHHHHHH-HHHHCcChHHeEEEEC--CEECCCCcccHHHCCCCCCCEEEEEECCC
Confidence 88888765 57788899999999999999 5655444445566543 36777766899999999999999986543
No 41
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.79 E-value=0.043 Score=40.94 Aligned_cols=75 Identities=12% Similarity=0.130 Sum_probs=59.3
Q ss_pred ceeEEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEeCch
Q 040408 99 KAVIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYDDA 178 (235)
Q Consensus 99 ~~~~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~~~~ 178 (235)
... |.||..+|..+...+.+++|+.+|...| .....-+.....|+. ..+.+.| +.+|.++|+.....|++.....
T Consensus 23 ~m~-I~Vk~~~g~~~~l~v~~~~TV~~LK~~I-~~~~gip~~~qrLi~--~Gk~L~D-~~tL~~ygI~~g~ti~lv~~~~ 97 (106)
T 1ttn_A 23 ECQ-LRLRLSTGKDLKLVVRSTDTVFHMKRRL-HAAEGVEPGSQRWFF--SGRPLTD-KMKFEELKIPKDYVVQVIVSQP 97 (106)
T ss_dssp SEE-EEEEETTTEEEEEEECTTSHHHHHHHHH-HHTTCCCSTTCEEEE--TTEECCT-TSHHHHCCCSSSCEEEEECCCS
T ss_pred eEE-EEEEcCCCCEEEEEeCCCCcHHHHHHHH-HHHHCcCcccEEEEE--CCEECCC-CCcHHHcCCCCCCEEEEEEeCC
Confidence 355 8999999999999999999999999999 555444445566664 3466654 6899999999999999987544
No 42
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=95.77 E-value=0.052 Score=40.76 Aligned_cols=73 Identities=23% Similarity=0.273 Sum_probs=57.9
Q ss_pred eeEEEEECC---CCceEEEEeCC-CCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEe
Q 040408 100 AVIIRVRFP---DNHTLEVNFHP-SETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSY 175 (235)
Q Consensus 100 ~~~IRIRFP---Dg~~lq~~F~~-~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~ 175 (235)
.. |.|+.| +|..+...+.+ ++|+.+|.+.| .....-+...-.|+.. .+.+.| +.+|.++|+.....|++..
T Consensus 28 i~-i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I-~~~~gip~~~QrL~~~--Gk~L~D-~~tL~~y~I~~g~~l~l~~ 102 (111)
T 1we6_A 28 AT-IRVSKPNENDGQFMEITVQSLSENVGSLKEKI-AGEIQIPANKQKLSGK--AGFLKD-NMSLAHYNVGAGEILTLSL 102 (111)
T ss_dssp EE-EEECCTTCSSSCCEEEEESCSSSBHHHHHHHH-HHHTTCCTTTSEEECS--SSBCCT-TSBTTTTTCSSSCEEEEEC
T ss_pred EE-EEEEecccCCCcEEEEEecCCCCcHHHHHHHH-HHHHCCCHHHeEEEEC--CEECCC-CCcHHHCCCCCCCEEEEEE
Confidence 45 999999 88889999998 99999999999 6665544455666643 356655 6899999999999999986
Q ss_pred Cc
Q 040408 176 DD 177 (235)
Q Consensus 176 ~~ 177 (235)
..
T Consensus 103 r~ 104 (111)
T 1we6_A 103 RE 104 (111)
T ss_dssp SS
T ss_pred Ec
Confidence 43
No 43
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.67 E-value=0.025 Score=42.85 Aligned_cols=71 Identities=15% Similarity=0.149 Sum_probs=57.4
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhcC-CC--------------CCCeEEEeCCCceeecCCCcCccccCCCC
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLS-RT--------------DVPFYLYTAPPKRIIKDMSQDFYSAGFIP 167 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~-~~--------------~~~F~L~~t~P~k~l~d~~~tL~elgL~P 167 (235)
|.|+--+|..+.....+++|+.+|-+.|. .... .+ +..|.|. +..+.|.|+++||.+.|+..
T Consensus 10 I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~-~~~~i~~~~q~g~~~isw~~~w~q~~Li--~~Gk~L~dD~~tL~dygI~~ 86 (105)
T 1v2y_A 10 VRVCKMDGEVMPVVVVQNATVLDLKKAIQ-RYVQLKQEREGGVQHISWSYVWRTYHLT--SAGEKLTEDRKKLRDYGIRN 86 (105)
T ss_dssp EEEECSSSCEEEEEECTTCBHHHHHHHHH-HHHHHHHHHTTCCCCCCHHHHHTTEEEE--SSSCEECCSSSBHHHHTCCS
T ss_pred EEEEecCCCEEEEEECCCChHHHHHHHHH-HHhCCCcccccCcceeeeeecceeEEEE--eCCcCccCCcCCHHHcCCCC
Confidence 88888999999999999999999999994 4431 11 1467887 45577777789999999999
Q ss_pred ceEEEEEeC
Q 040408 168 GAIVYFSYD 176 (235)
Q Consensus 168 sall~~~~~ 176 (235)
...|+|.--
T Consensus 87 g~~l~lv~~ 95 (105)
T 1v2y_A 87 RDEVSFIKK 95 (105)
T ss_dssp SEEEEEEEC
T ss_pred CCEEEEEeh
Confidence 999999853
No 44
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=95.58 E-value=0.037 Score=41.54 Aligned_cols=75 Identities=24% Similarity=0.332 Sum_probs=54.8
Q ss_pred EEEEECCCCceEEEEeC-CCCchHHHHHHHHHhhcCCCCCCeEEEeCC-------Cce--ee---cCCCcCccccCCCCc
Q 040408 102 IIRVRFPDNHTLEVNFH-PSETMQSLVDFLRMRVLSRTDVPFYLYTAP-------PKR--II---KDMSQDFYSAGFIPG 168 (235)
Q Consensus 102 ~IRIRFPDg~~lq~~F~-~~etl~~l~~fV~~~~L~~~~~~F~L~~t~-------P~k--~l---~d~~~tL~elgL~Ps 168 (235)
.||||-++|.. ..... +++|+.+|.+.| .+...-+.....|+... |.. .+ .+++.+|.++|+...
T Consensus 9 ~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI-~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G 86 (107)
T 1wf9_A 9 MLRVRSRDGLE-RVSVDGPHITVSQLKTLI-QDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG 86 (107)
T ss_dssp EEEEECSSCEE-EEEECCTTSBHHHHHHHH-HHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred EEEEECCCCCE-EEEECCCCCcHHHHHHHH-HHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence 49999999976 45677 999999999999 66665444455554321 111 33 356789999999999
Q ss_pred eEEEEEeCch
Q 040408 169 AIVYFSYDDA 178 (235)
Q Consensus 169 all~~~~~~~ 178 (235)
..||+.....
T Consensus 87 ~~L~l~~~~~ 96 (107)
T 1wf9_A 87 SMVYLAYEGE 96 (107)
T ss_dssp CEEECCCSSC
T ss_pred CEEEEEeCCC
Confidence 9999987643
No 45
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=95.49 E-value=0.075 Score=40.32 Aligned_cols=76 Identities=9% Similarity=0.029 Sum_probs=60.3
Q ss_pred CceeEEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEeCc
Q 040408 98 RKAVIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYDD 177 (235)
Q Consensus 98 ~~~~~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~~~ 177 (235)
.+.. |.|+..+|..+...+.+++|+.+|.+.| .....-+.....|+.. .+.+.| +.+|.++|+...+.|++....
T Consensus 8 ~~~~-i~vk~l~G~~~~l~v~~~~TV~~LK~~I-~~~~gip~~~qrLi~~--Gk~L~D-~~tL~~ygI~~gstI~l~~~~ 82 (114)
T 2kdi_A 8 GEFQ-IFAKTLTGKTITLEVESSDTIDNVKSKI-QDKEGIPPDQQRLIWA--GKQLED-GRTLSDYNIQRESTLHLVLRL 82 (114)
T ss_dssp CCCE-EEEEETTCCEEEEECCTTCBHHHHHHHH-HHHHCCCGGGEEEEET--TEECCT-TCBTTTTTCCSSCEEEEEECC
T ss_pred CcEE-EEEEeCCCcEEEEEECCCCcHHHHHHHH-HHHHCcChHHEEEEEC--CEECCC-CCcHHHCCCCCCCEEEEEEEc
Confidence 3456 8999999999999999999999999999 5655544455666643 467754 689999999999999998754
Q ss_pred h
Q 040408 178 A 178 (235)
Q Consensus 178 ~ 178 (235)
.
T Consensus 83 ~ 83 (114)
T 2kdi_A 83 R 83 (114)
T ss_dssp C
T ss_pred C
Confidence 3
No 46
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.40 E-value=0.083 Score=39.24 Aligned_cols=70 Identities=19% Similarity=0.271 Sum_probs=55.3
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEeCc
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYDD 177 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~~~ 177 (235)
|+|+..+|. ....+..++|+.+|.+.| .....-+.....|+.. .+.|.| +.+|.++|+.....|++....
T Consensus 20 I~Vk~~~g~-~~l~v~~~~TV~~LK~~I-~~~~gip~~~qrLi~~--Gk~L~D-~~tL~~~gi~~g~~i~l~~~~ 89 (106)
T 1wx7_A 20 VTVKTPKDK-EDFSVTDTCTIQQLKEEI-SQRFKAHPDQLVLIFA--GKILKD-PDSLAQCGVRDGLTVHLVIKR 89 (106)
T ss_dssp EEEECSSCE-EEEEEETTCCHHHHHHHH-HHHHTCCTTTEEEEET--TEECCT-TSCHHHHTCCTTEEEEEEECC
T ss_pred EEEEeCCCc-EEEEECCCCcHHHHHHHH-HHHHCcChhhEEEEEC--CEECCC-cCcHHHcCCCCCCEEEEEEcC
Confidence 889999886 578889999999999999 5655544456667643 467754 689999999999999998644
No 47
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.39 E-value=0.14 Score=39.58 Aligned_cols=74 Identities=15% Similarity=0.223 Sum_probs=56.3
Q ss_pred eeEEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEeCchh
Q 040408 100 AVIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYDDAY 179 (235)
Q Consensus 100 ~~~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~~~~~ 179 (235)
.. |.|+.. |..+...+.+++|+.+|.+.| .....-+.....|+. -.+.|.| +.+|.++|+....+|++......
T Consensus 33 m~-I~Vk~~-g~~~~l~v~~~~TV~~LK~~I-~~~~gip~~~QrLi~--~Gk~L~D-~~tL~dygI~~gstI~lv~~~~g 106 (125)
T 1j8c_A 33 IK-VTVKTP-KEKEEFAVPENSSVQQFKEAI-SKRFKSQTDQLVLIF--AGKILKD-QDTLIQHGIHDGLTVHLVIKRDP 106 (125)
T ss_dssp EE-EEEECS-SCEEEEEECTTCCHHHHHHHH-HHHHCSCSSSEEEEE--TTEEEST-TSCGGGTTCSSSEEEEEEEC---
T ss_pred EE-EEEEeC-CeEEEEEECCCCcHHHHHHHH-HHHHCcCcceEEEEE--CCEEcCC-CCCHHHcCCCCCCEEEEEeccCC
Confidence 44 888888 888889999999999999999 565554445566664 3467754 68999999999999999875543
No 48
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=95.37 E-value=0.12 Score=38.30 Aligned_cols=72 Identities=15% Similarity=0.223 Sum_probs=55.8
Q ss_pred ceeEEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEeC
Q 040408 99 KAVIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYD 176 (235)
Q Consensus 99 ~~~~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~~ 176 (235)
... |.|+.. |..+...+.+++|+++|.+.| .....-+.....|+. ..+.+.| +.+|.++|+.....|++...
T Consensus 25 ~m~-I~Vk~~-g~~~~l~v~~~~TV~~LK~~I-~~~~gip~~~qrLi~--~Gk~L~D-~~tL~~~gI~~g~~I~l~~~ 96 (101)
T 2klc_A 25 IMK-VTVKTP-KEKEEFAVPENSSVQQFKEEI-SKRFKSHTDQLVLIF--AGKILKD-QDTLSQHGIHDGLTVHLVIK 96 (101)
T ss_dssp CEE-EEEECS-SCEEEEEECSCCCHHHHHHHH-HHHHTCCGGGEEEEE--TTEEECT-TCCTGGGTCCTTCEEEEEEC
T ss_pred eEE-EEEEeC-CcEEEEEECCCCCHHHHHHHH-HHHHCcChhhEEEEE--CCEECCC-cCcHHHcCCCCCCEEEEEEc
Confidence 345 889988 777889999999999999999 565544444566654 3567754 68999999999999988753
No 49
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.27 E-value=0.16 Score=36.43 Aligned_cols=72 Identities=15% Similarity=0.195 Sum_probs=55.2
Q ss_pred eeEEEEECCCCceEEEEeCCC-----CchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEE
Q 040408 100 AVIIRVRFPDNHTLEVNFHPS-----ETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFS 174 (235)
Q Consensus 100 ~~~IRIRFPDg~~lq~~F~~~-----etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~ 174 (235)
.. |.|+.. |......|.++ .|+.+|.+.| .....-+...-.|+. -.+.+.|.+++|.++|+.....|++.
T Consensus 8 ~~-v~Vk~~-~~~~~i~v~~~~~~~~~TV~~LK~~i-~~~~gip~~~qrL~~--~Gk~L~D~~~~L~~~~i~~g~~i~l~ 82 (92)
T 1wxv_A 8 LT-VTVTHS-NEKHDLHVTSQQGSSEPVVQDLAQVV-EEVIGVPQSFQKLIF--KGKSLKEMETPLSALGIQDGCRVMLI 82 (92)
T ss_dssp EE-EEEECS-SSEEEEEECCCSSSSSCBHHHHHHHH-HHHTCCCTTTCEEEE--TTEEECCSSSBHHHHTCCSSEEEEEE
T ss_pred EE-EEEEEC-CEEEEEEECCCcCcccCcHHHHHHHH-HHHHCcCHHHEEEEE--CCeecCCCcccHHHCCCCCCCEEEEE
Confidence 44 888885 66678889985 9999999999 666554455566664 35677776789999999999999987
Q ss_pred eC
Q 040408 175 YD 176 (235)
Q Consensus 175 ~~ 176 (235)
-.
T Consensus 83 ~~ 84 (92)
T 1wxv_A 83 GK 84 (92)
T ss_dssp SC
T ss_pred ec
Confidence 53
No 50
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.27 E-value=0.13 Score=39.84 Aligned_cols=70 Identities=17% Similarity=0.304 Sum_probs=56.9
Q ss_pred EEEE-CCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEeC
Q 040408 103 IRVR-FPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYD 176 (235)
Q Consensus 103 IRIR-FPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~~ 176 (235)
|.|. .|+|..++..|.++.|+++|-+.+ ...+.-+...-.|.. -.+++.| +.||.++|..+...+|+.--
T Consensus 18 vkv~l~~~~~k~tv~v~~d~TV~dLKe~l-s~~~~iP~e~qrLIy--~GKiLKD-~eTL~~~gIk~g~TIhLvi~ 88 (118)
T 2daf_A 18 VKVVLIPVGQEIVIPFKVDTILKYLKDHF-SHLLGIPHSVLQIRY--SGKILKN-NETLVQHGVKPQEIVQVEIF 88 (118)
T ss_dssp EEEEETTTCCEEEEEECSSSCSHHHHHHH-HHHHTCCTTTEEEEE--TTEEECS-SCCHHHHSCCSSCEEEEEEE
T ss_pred EEEEEcCCCcEEEEEeCCCCcHHHHHHHH-HhhhCCChHHEEEEE--CCeEcCC-cchHHHcCCCCCCEEEEEEe
Confidence 6666 899999999999999999999999 666655555555554 4578876 67999999999999998753
No 51
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=95.22 E-value=0.096 Score=40.53 Aligned_cols=71 Identities=13% Similarity=0.107 Sum_probs=56.0
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEeCc
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYDD 177 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~~~ 177 (235)
|.|+.++|..+...+.+++|+.+|.+.| .....-+.....|+.. .+.+.| +.+|.++|+.....|++....
T Consensus 3 i~vk~~~g~~~~~~v~~~~tv~~lK~~i-~~~~gip~~~q~L~~~--g~~L~d-~~tL~~~~i~~~~~l~l~~~~ 73 (152)
T 3b08_A 3 IFVKTLTGKTITLEVEPSDTIENVKAKI-QDKEGIPPDQQRLIFA--GKQLED-GRTLSDYNIQKESTLHLVLRL 73 (152)
T ss_dssp EEEEETTSCEEEEECCTTCBHHHHHHHH-HHHHCCCGGGEEEEET--TEECCT-TSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEeCCCCEEEEEECCCCCHHHHHHHH-HHHHCcChHHeEEEEC--CeECcC-cccHHHhccCCCCeeEEEeec
Confidence 8899999999999999999999999999 5655544445566643 456654 689999999999988887643
No 52
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=95.18 E-value=0.085 Score=37.77 Aligned_cols=73 Identities=8% Similarity=0.077 Sum_probs=57.4
Q ss_pred CceeEEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCcee-ecCCCcCccccCCCCceEEEEEe
Q 040408 98 RKAVIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRI-IKDMSQDFYSAGFIPGAIVYFSY 175 (235)
Q Consensus 98 ~~~~~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~-l~d~~~tL~elgL~Psall~~~~ 175 (235)
..-. |.|+.-+|..+...+.+++|+.+|.+.| .....-+.....|+.. .+. +.| +.+|.++|+...+.|++..
T Consensus 9 ~~~~-i~vk~l~g~~~~l~v~~~~TV~~LK~~I-~~~~gip~~~QrLi~~--Gk~lL~D-~~tL~~y~I~~gs~i~lv~ 82 (84)
T 2kk8_A 9 SHMK-FLVENLNGSSFELEVDYRDTLLVVKQKI-ERSQHIPVSKQTLIVD--GIVILRE-DLTVEQCQIVPTSDIQLEV 82 (84)
T ss_dssp CCEE-EEEEETTSCEEEEEECTTSBHHHHHHHH-HHHHTCCGGGEEEEET--TEECCCS-SSBHHHHTCCTTSCEEEEE
T ss_pred CceE-EEEEecCCcEEEEEECCCChHHHHHHHH-HHHHCcChHHEEEEEC--CEEecCC-cCCHHHcCCCCCCEEEEEE
Confidence 3456 8999999999999999999999999999 5655544455666643 466 654 6899999999998888764
No 53
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=95.16 E-value=0.074 Score=38.98 Aligned_cols=72 Identities=8% Similarity=0.037 Sum_probs=57.2
Q ss_pred ceeEEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEe
Q 040408 99 KAVIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSY 175 (235)
Q Consensus 99 ~~~~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~ 175 (235)
... |.|+..+|..+.....+++|+.+|.+.| .....-+.....|+. ..+.|.| +.||.++|+.....|++..
T Consensus 21 ~m~-I~Vk~~~g~~~~l~v~~~~tv~~lK~~i-~~~~gip~~~qrLif--~Gk~L~d-~~tl~dy~i~~g~~I~l~~ 92 (97)
T 1wyw_B 21 YIK-LKVIGQDSSEIHFKVKMTTHLKKLKESY-CQRQGVPMNSLRFLF--EGQRIAD-NHTPKELGMEEEDVIEVYQ 92 (97)
T ss_dssp EEE-EEEECTTCCEEEEEEETTSCTHHHHHHH-HHHHTCCGGGEEEEE--TTEECCT-TCCHHHHTCCTTCEEEEEE
T ss_pred cEE-EEEEeCCCCEEEEEECCCCcHHHHHHHH-HHHHCCChhhEEEEE--CCeEcCC-CCCHHHCCCCCCCEEEEEE
Confidence 455 8999999999999999999999999999 555444445566664 3467754 6899999999999999875
No 54
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.05 E-value=0.068 Score=38.75 Aligned_cols=72 Identities=14% Similarity=0.217 Sum_probs=55.3
Q ss_pred eeEEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEeCc
Q 040408 100 AVIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYDD 177 (235)
Q Consensus 100 ~~~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~~~ 177 (235)
.. |.|+.. |..+...+.+++|+.+|.+.| .....-+.....|+. ..+.+.| +.+|.++|+.....|++....
T Consensus 18 m~-i~Vk~~-g~~~~~~v~~~~TV~~LK~~I-~~~~gip~~~qrL~~--~Gk~L~D-~~tL~~~gi~~g~~i~l~~~~ 89 (96)
T 1wx8_A 18 IR-VSVKTP-QDCHEFFLAENSNVRRFKKQI-SKYLHCNADRLVLIF--TGKILRD-QDILSQRGILDGSTVHVVVRS 89 (96)
T ss_dssp EE-EEEECS-SSEEEEEEETTCCHHHHHHHH-HHHTCSCTTTBCCEE--TTEECCT-TSCHHHHTCCTTEEEECCBCC
T ss_pred EE-EEEEEC-CeEEEEEECCCCCHHHHHHHH-HHHhCCCHHHEEEEE--CCEECCC-cCCHHHCCCCCCCEEEEEEeC
Confidence 44 888888 888889999999999999999 566544444455553 3466654 689999999999999987643
No 55
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=94.92 E-value=0.11 Score=40.28 Aligned_cols=69 Identities=12% Similarity=0.121 Sum_probs=55.7
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEe
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSY 175 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~ 175 (235)
|.|+..+|..+...+.+++|+.+|.+.| .....-+.....|+. ..+.+.| +.+|.++|+...+.|++..
T Consensus 79 i~Vk~~~g~~~~~~v~~~~tv~~lK~~i-~~~~gi~~~~qrL~~--~g~~L~d-~~tL~~~~i~~~~~i~l~~ 147 (152)
T 3b08_A 79 IFVKTLTGKTITLEVEPSDTIENVKAKI-QDKEGIPPDQQRLIF--AGKQLED-GRTLSDYNIQKESTLHLVL 147 (152)
T ss_dssp EEEEESSSCEEEEEECTTCBHHHHHHHH-HHHHCCCGGGEEEEE--TTEECCT-TSBTGGGTCCTTCEEEEEE
T ss_pred eeeeecCCCEEEEEeCCCCcHHHHHHHH-HHHhCcChhhEEEEE--CCEECCC-CCCHHHcCCCCCCEEEEEE
Confidence 7888889988999999999999999999 565544445566764 3567754 6899999999999999875
No 56
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=94.76 E-value=0.18 Score=37.43 Aligned_cols=70 Identities=13% Similarity=0.096 Sum_probs=52.4
Q ss_pred ceeEEEEECCCCc--eEEEEeCCCCchHHHHHHHHHhhcC--CCCCCeEEEeCCCceeecCCCcCcccc--CCCCceEEE
Q 040408 99 KAVIIRVRFPDNH--TLEVNFHPSETMQSLVDFLRMRVLS--RTDVPFYLYTAPPKRIIKDMSQDFYSA--GFIPGAIVY 172 (235)
Q Consensus 99 ~~~~IRIRFPDg~--~lq~~F~~~etl~~l~~fV~~~~L~--~~~~~F~L~~t~P~k~l~d~~~tL~el--gL~Psall~ 172 (235)
... |.||.++|. .+.....+++|+.+|-+.| ...+. .+.....|+. -.+.|.| +.+|.++ |+.....|+
T Consensus 23 ~m~-I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I-~~~~~g~pp~~~QrLIy--~Gk~L~D-~~tL~~y~~~I~~~~tih 97 (99)
T 2kdb_A 23 PVT-LIIKAPNQKYSDQTISCFLNWTVGKLKTHL-SNVYPSKPLTKDQRLVY--SGRLLPD-HLQLKDILRKQDEYHMVH 97 (99)
T ss_dssp CEE-EEEECTTSSSCCEEEEECTTSBHHHHHHHH-HHHSTTCCCTTTCCEEE--TTEEECT-TSBTHHHHTTTCSEEEEE
T ss_pred eEE-EEEEcCCCCEEEEEEEcCCCCHHHHHHHHH-HHHhcCCCChhhEEEEE--CCEECCC-CCCHHHHhcCCCCCCEEE
Confidence 355 999999997 4566669999999999999 55442 2224566664 3577765 6899999 999888887
Q ss_pred E
Q 040408 173 F 173 (235)
Q Consensus 173 ~ 173 (235)
+
T Consensus 98 L 98 (99)
T 2kdb_A 98 L 98 (99)
T ss_dssp E
T ss_pred e
Confidence 6
No 57
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=93.76 E-value=0.0052 Score=42.58 Aligned_cols=69 Identities=10% Similarity=0.129 Sum_probs=52.3
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEe
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSY 175 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~ 175 (235)
|.||.++|..+...+.+++|+++|.+.| .....-+.....|+. ..+.+.| +.+|.++|+...+.|++..
T Consensus 3 i~Vk~~~g~~~~~~v~~~~tV~~lK~~i-~~~~gi~~~~qrL~~--~gk~L~d-~~tL~~~~i~~g~~i~l~~ 71 (76)
T 3b1l_X 3 VFVRFNSSYGFPVEVDSDTSILQLKEVV-AKQQGVPADQLRVIF--AGKELPN-HLTVQNCDLEQQSIVHIVQ 71 (76)
Confidence 7889999998888999999999999999 555443334445543 3456654 6899999999888888753
No 58
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=94.69 E-value=0.22 Score=35.82 Aligned_cols=72 Identities=15% Similarity=0.133 Sum_probs=54.7
Q ss_pred eeEEEEECCCCc--eEEEEeCCCCchHHHHHHHHHhhc--CCCCCCeEEEeCCCceeecCCCcCcccc--CCCCceEEEE
Q 040408 100 AVIIRVRFPDNH--TLEVNFHPSETMQSLVDFLRMRVL--SRTDVPFYLYTAPPKRIIKDMSQDFYSA--GFIPGAIVYF 173 (235)
Q Consensus 100 ~~~IRIRFPDg~--~lq~~F~~~etl~~l~~fV~~~~L--~~~~~~F~L~~t~P~k~l~d~~~tL~el--gL~Psall~~ 173 (235)
.. |.|+.++|. .+.....+++|+.+|.+.| .... .-+...-.|+. ..+.+.| +.+|.++ |+.....|++
T Consensus 8 m~-i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I-~~~~~~~i~~~~QrLi~--~Gk~L~D-~~tL~~~~~~i~~~~~i~l 82 (93)
T 1wgd_A 8 VT-LLVKSPNQRHRDLELSGDRGWSVGHLKAHL-SRVYPERPRPEDQRLIY--SGKLLLD-HQCLRDLLPKQEKRHVLHL 82 (93)
T ss_dssp CE-EEEECSSSSCCCEEEECCTTSCHHHHHHHH-HHHSTTCCCTTTCEEEE--TTEECCS-SSCHHHHSCSSSCSEEEEE
T ss_pred EE-EEEEeCCCCeEEEEEecCCCCcHHHHHHHH-HHHhcCCCChHHeEEEE--CCEECcC-cCCHHHHhcCCCCCCEEEE
Confidence 44 899999998 5666666999999999999 5654 33345566664 3577765 5799999 9999999998
Q ss_pred EeC
Q 040408 174 SYD 176 (235)
Q Consensus 174 ~~~ 176 (235)
...
T Consensus 83 v~~ 85 (93)
T 1wgd_A 83 VCN 85 (93)
T ss_dssp ECC
T ss_pred EeC
Confidence 754
No 59
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=94.68 E-value=0.13 Score=38.62 Aligned_cols=71 Identities=13% Similarity=0.052 Sum_probs=55.8
Q ss_pred eeEEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEe
Q 040408 100 AVIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSY 175 (235)
Q Consensus 100 ~~~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~ 175 (235)
.. |-|+-..|..+...+.+++|+.+|.+.| ...-.-+...-.|.. ..++|.| +.+|.+.|+.....|++.+
T Consensus 29 m~-I~VKtl~Gk~i~lev~p~dTV~~lK~~I-a~k~Gip~~qQrLi~--~Gk~L~D-~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 29 IE-VVCNDRLGKKVRVKCNTDDTIGDLKKLI-AAQTGTRWNKIVLKK--WYTIFKD-HVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp EE-EEEECSSSSCEEEEEETTSBHHHHHHHH-HHHHCCCGGGCEEEE--TTEECCS-SCBHHHHTCCTTEEEEEEC
T ss_pred EE-EEEECCCCCEEEEEeCCCCcHHHHHHHH-HHHhCCCHHHEEEEE--CCEECCC-CCCHHHcCCCCCCEEEEEe
Confidence 44 8888888888999999999999999999 555443344455653 4678865 6899999999999998875
No 60
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=94.66 E-value=0.13 Score=42.79 Aligned_cols=73 Identities=11% Similarity=0.104 Sum_probs=58.1
Q ss_pred ceeEEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEeC
Q 040408 99 KAVIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYD 176 (235)
Q Consensus 99 ~~~~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~~ 176 (235)
+-. |.|+..+|..+...+.+++|+.+|-+.| .....-+.....|+. ..+.|.| +.+|.++|+.+...|++...
T Consensus 105 eMq-I~VKtl~Gkt~~l~V~~s~TV~~LK~kI-~~~~gIp~~~QrLi~--~Gk~L~D-~~tL~dygI~~gstI~Lvlr 177 (189)
T 3q3f_A 105 GGQ-IFVKTLTGKTITLEVEPSDTIENVKAKI-QDKEGIPPDQQRLIF--AGKQLED-GRTLSDYNIQKESTLHLVLR 177 (189)
T ss_dssp CEE-EEEECTTSCEEEEEECTTCBHHHHHHHH-HHHHCCCGGGCCEEE--TTEECCT-TCBGGGGTCCTTCEEEECCC
T ss_pred cee-eeeecCCCCEEEEEeCCCCcHHHHHHHH-HhccCCCHHHEEEEE--CCEECCC-CCCHHHCCCCCCCEEEEEEE
Confidence 355 8999999999999999999999999999 555544444456653 4467765 68999999999999999764
No 61
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=94.61 E-value=0.23 Score=36.80 Aligned_cols=72 Identities=10% Similarity=0.043 Sum_probs=58.0
Q ss_pred ceeEEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEe
Q 040408 99 KAVIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSY 175 (235)
Q Consensus 99 ~~~~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~ 175 (235)
... |-|+.+.|..+...+.+++|+.+|-+-| .+-..-+...-.|.. ..++|.| ..||.+.|+.....|++-+
T Consensus 21 mIq-I~Vk~~~Gkk~~v~v~p~DTI~~LK~~I-~~k~Gip~~qQrLif--~Gk~LkD-~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 21 MIE-VVVNDRLGKKVRVKCLGEDSVGDFKKVL-SLQIGTQPNKIVLQK--GGSVLKD-HISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp EEE-EEEECTTSCEEEEEEETTSBHHHHHHHH-HHHHTCCGGGEEEEE--TTEECCT-TSBTGGGTCCTTCEEEEEE
T ss_pred eEE-EEEECCCCCEEEEEECCcCHHHHHHHHH-HHHhCCCHHHEEEEe--CCEEccC-cCCHHHcCCCCCCEEEEEe
Confidence 344 8889999999999999999999999999 555554555667765 4477766 6899999999999988754
No 62
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=94.54 E-value=0.11 Score=38.50 Aligned_cols=68 Identities=21% Similarity=0.197 Sum_probs=52.9
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEe
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSY 175 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~ 175 (235)
|+|+. +|..+...+.+++|+++|.+.| .....-+...-.|+. -.+.+.| +.+|.++|+.....|++..
T Consensus 31 I~Vk~-~g~~~~l~v~~~~TV~~LK~~I-~~~~gip~~~QrLi~--~Gk~L~D-~~tL~~~gI~~g~tI~lv~ 98 (101)
T 3m63_B 31 IHIKS-GQDKWEVNVAPESTVLQFKEAI-NKANGIPVANQRLIY--SGKILKD-DQTVESYHIQDGHSVHLVK 98 (101)
T ss_dssp EEEEC-SSCCCCBCCCTTSBHHHHHHHH-HHHHSCCSTTCCEEE--TTEECCT-TSBTTTTTCCTTEEEEECC
T ss_pred EEEEE-CCEEEEEEeCCCCCHHHHHHHH-HHHHCcChHHEEEEE--CCEECCC-cCcHHHCCCCCCCEEEEEe
Confidence 78887 8888888999999999999999 555544444456654 3467755 7899999999999998863
No 63
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=94.51 E-value=0.15 Score=37.97 Aligned_cols=72 Identities=21% Similarity=0.198 Sum_probs=55.0
Q ss_pred eeEEEEECCCC---ceEEEEeCC---------CCchHHHHHHHHHhhc--CCCCCC-eEEEeCCCceeecCCCcCccccC
Q 040408 100 AVIIRVRFPDN---HTLEVNFHP---------SETMQSLVDFLRMRVL--SRTDVP-FYLYTAPPKRIIKDMSQDFYSAG 164 (235)
Q Consensus 100 ~~~IRIRFPDg---~~lq~~F~~---------~etl~~l~~fV~~~~L--~~~~~~-F~L~~t~P~k~l~d~~~tL~elg 164 (235)
.. |.||..+| ......|.. ++|+.+|.+.| .... .-+... ..|+. -.+.|.| +.+|.++|
T Consensus 13 ~~-i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i-~~~~~~gip~~~~qrLi~--~Gk~L~D-~~tL~~y~ 87 (107)
T 1x1m_A 13 WH-LAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLI-AGKLQESVPDPELIDLIY--CGRKLKD-DQTLDFYG 87 (107)
T ss_dssp CC-EEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHH-HHHCTTTCCCSSSEEEEE--TTEECCT-TCBHHHHT
T ss_pred eE-EEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHH-HHHhccCCChhhcEEEEE--CCeECCC-CCcHHHcC
Confidence 45 88999999 777788766 59999999999 6665 334445 66664 3467754 68999999
Q ss_pred CCCceEEEEEeC
Q 040408 165 FIPGAIVYFSYD 176 (235)
Q Consensus 165 L~Psall~~~~~ 176 (235)
+.....|++...
T Consensus 88 i~~g~~i~lv~~ 99 (107)
T 1x1m_A 88 IQPGSTVHVLRK 99 (107)
T ss_dssp CCTTCEEEEEES
T ss_pred CCCCCEEEEEeC
Confidence 999999998764
No 64
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=94.45 E-value=0.23 Score=35.38 Aligned_cols=68 Identities=13% Similarity=0.208 Sum_probs=51.1
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEe
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSY 175 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~ 175 (235)
+.+.+ +|..+...+.+++|+++|.+.| .....-+.....|+. ..+.+.| +.+|.++|+...+.|++..
T Consensus 15 ~~~~~-~g~~~~l~v~~~~TV~~LK~~I-~~~~gip~~~qrL~~--~Gk~L~D-~~tL~~~gi~~g~~l~l~~ 82 (85)
T 2kd0_A 15 LTVKF-GGKSIPLSVSPDCTVKDLKSQL-QPITNVLPRGQKLIF--KGKVLVE-TSTLKQSDVGSGAKLMLMA 82 (85)
T ss_dssp EEEEE-TTEEEEEEECTTSBHHHHHHHH-HHHHCCCTTTCEEEE--TTEECCT-TCBTTTTTCCTTEEEEEEC
T ss_pred EEEEE-CCEEEEEEECCCCcHHHHHHHH-HHHHCcChHHEEEEE--CCeECCC-cCCHHHCCCCCCCEEEEEE
Confidence 44444 7777888999999999999999 555544445566664 3467654 6899999999999988863
No 65
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=94.44 E-value=0.25 Score=38.91 Aligned_cols=71 Identities=17% Similarity=0.181 Sum_probs=56.9
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEeCc
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYDD 177 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~~~ 177 (235)
|.|+..+|..+...+.+++|+.+|-+.| .....-+.....|+.. .+.+.| +.+|.++|+.....|++....
T Consensus 84 i~vk~~~g~~~~~~v~~~~tV~~lK~~i-~~~~gip~~~q~L~~~--G~~L~d-~~tL~~y~i~~g~~l~l~~rl 154 (159)
T 3rt3_B 84 ILVRNNKGRSSTYEVRLTQTVAHLKQQV-SGLEGVQDDLFWLTFE--GKPLED-QLPLGEYGLKPLSTVFMNLRL 154 (159)
T ss_dssp EEEECTTSCEEEEEECTTSBHHHHHHHH-HHHHTCCGGGEEEEET--TEECCT-TSBGGGGTCCTTCEEEEEECC
T ss_pred EEEECCCCCEEEEEeCCCCCHHHHHHHH-HHHHCCCHHHEEEEEC--CeecCC-CCCHHHcCCCCCCEEEEEEec
Confidence 6678889999999999999999999999 5554444556777753 367765 689999999999999998643
No 66
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=94.39 E-value=0.16 Score=37.50 Aligned_cols=72 Identities=17% Similarity=0.242 Sum_probs=55.5
Q ss_pred eeEEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEeCc
Q 040408 100 AVIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYDD 177 (235)
Q Consensus 100 ~~~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~~~ 177 (235)
.. |.|+..+|. ....+.+++|+.+|.+.| .....-+.....|+. ..+.+.| +.+|.++|+.....|++....
T Consensus 23 m~-I~Vk~~~g~-~~l~v~~~~TV~~LK~~I-~~~~gip~~~QrLi~--~Gk~L~D-~~tL~~ygI~~gstI~l~~r~ 94 (100)
T 1yqb_A 23 IK-VTVKTPKDK-EDFSVTDTCTIQQLKEEI-SQRFKAHPDQLVLIF--AGKILKD-PDSLAQCGVRDGLTVHLVIKR 94 (100)
T ss_dssp EE-EEEECSSCE-EEEEEETTCBHHHHHHHH-HHHHTCCGGGEEEEE--TTEECCT-TSBHHHHTCCTTCEEEEEECC
T ss_pred EE-EEEEcCCCc-EEEEECCCCcHHHHHHHH-HHHHCcChhhEEEEE--CCEECCC-cCcHHHCCCCCCCEEEEEEcC
Confidence 45 899999986 578889999999999999 555544444566654 3467754 689999999999999987643
No 67
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=94.37 E-value=0.26 Score=39.89 Aligned_cols=71 Identities=11% Similarity=0.074 Sum_probs=57.4
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEeCc
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYDD 177 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~~~ 177 (235)
|.||..+|..+...+.+++|+.+|-+.| .....-+.....|+.. .+.+.| +.+|.++|+.....|++....
T Consensus 3 I~Vk~~~Gk~~~l~v~~~~TV~~LK~~I-~~~~gip~~~QrLi~~--Gk~L~D-~~tL~~y~I~~gstI~Lvlrl 73 (169)
T 3l0w_B 3 IFVKTLTGKTITLEVESSDTIDNVKSKI-QDKEGIPPDQQRLIFA--GKQLED-GRTLSDYNIQKESTLHLVLRL 73 (169)
T ss_dssp EEEEETTSCEEEEECCTTCBHHHHHHHH-HHHHCCCTTTEEEEET--TEECCT-TSBGGGGTCCTTCEEEEEECC
T ss_pred EEEEeCCCCEEEEEeCCCCCHHHHHHHH-HHHHCcCHHHEEEEEC--CccccC-cCcHHHcCCCCCCEEEEEEEe
Confidence 7899999999999999999999999999 5555544555677653 366755 689999999999999998654
No 68
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=94.18 E-value=0.2 Score=36.27 Aligned_cols=67 Identities=10% Similarity=0.026 Sum_probs=52.5
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEe
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSY 175 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~ 175 (235)
|.|+. |..+...+.+++|+.+|.+.| .....-+.....|+.. .+.+.| +.+|.++|+.....|++..
T Consensus 22 I~Vk~--g~~~~l~v~~~~TV~~LK~~I-~~~~gip~~~qrLi~~--Gk~L~D-~~tL~~y~I~~gstI~lv~ 88 (93)
T 2l7r_A 22 LFVRA--QELHTFEVTGQETVAQIKAHV-ASLEGIAPEDQVVLLA--GAPLED-EATLGQCGVEALTTLEVAG 88 (93)
T ss_dssp EEEES--SSEEEEECCSSCBHHHHHHHH-HHHHTCCGGGCEEEET--TEECCT-TSBHHHHTCCSSCEEEEEC
T ss_pred EEEEC--CCEEEEEeCCCCcHHHHHHHH-HHHhCcChhHEEEEEC--CEECCC-CCcHHHCCCCCCCEEEEEE
Confidence 77787 778888999999999999999 5655444455666643 466754 6899999999999999875
No 69
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=93.81 E-value=0.14 Score=37.57 Aligned_cols=66 Identities=14% Similarity=0.185 Sum_probs=49.3
Q ss_pred EEEECCCCceE-EEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEE
Q 040408 103 IRVRFPDNHTL-EVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFS 174 (235)
Q Consensus 103 IRIRFPDg~~l-q~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~ 174 (235)
|+|+. .|..+ ...+.+++|+.+|.+.| .+...-+...-.|+ +..+.+.| + +|.++|+.....|++.
T Consensus 10 i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I-~~~tgip~~~QkLi--~~Gk~L~D-~-tL~~~~I~~g~~i~l~ 76 (96)
T 1wgg_A 10 VTVKW-GKEKFEGVELNTDEPPMVFKAQL-FALTGVQPARQKVM--VKGGTLKD-D-DWGNIKMKNGMTVLMM 76 (96)
T ss_dssp EEEEE-TTEEEEEEEEESSSCHHHHHHHH-HHHTCCCTTTSCCE--ETTEECCS-S-CCCSCCCCSSCEEECC
T ss_pred EEEEE-CCEEEEEEEECCCCcHHHHHHHH-HHHHCcCHHHeEEE--ECCcCCCC-C-CHHHCCCCCCCEEEEE
Confidence 78886 56666 58899999999999999 55544333444454 34567766 4 9999999999888885
No 70
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=93.71 E-value=0.3 Score=38.40 Aligned_cols=71 Identities=15% Similarity=0.220 Sum_probs=55.8
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEE-eCCCceeecCCCcCccccCCCCceEEEEEeC
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLY-TAPPKRIIKDMSQDFYSAGFIPGAIVYFSYD 176 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~-~t~P~k~l~d~~~tL~elgL~Psall~~~~~ 176 (235)
|.|+..+|..+...+.+++|+.+|-+.| .....-+...-.|+ ... .+.+. ++.+|.++|+.+...|++...
T Consensus 5 i~vk~~~g~~~~l~v~~~~tV~~lK~~I-~~~~gip~~~QrL~~~~~-g~~L~-d~~tL~~y~i~~~~~l~l~~~ 76 (159)
T 3rt3_B 5 LTVKMLAGNEFQVSLSSSMSVSELKAQI-TQKIGVHAFQQRLAVHPS-GVALQ-DRVPLASQGLGPGSTVLLVVD 76 (159)
T ss_dssp EEEEETTSCEEEEECCTTCCHHHHHHHH-HHHHCCCGGGEEEEEETT-CCBCC-TTSCGGGGTCCTTCEEEEEEC
T ss_pred EEEEECCCCEEEEEeCCCCcHHHHHHHH-HHHhCCCHHHEEEEEcCC-CCCCC-CCCCHHHcCCCCCCEEEEEcc
Confidence 8899889999999999999999999999 56655444455666 312 35664 478999999999998888764
No 71
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=93.66 E-value=0.26 Score=35.46 Aligned_cols=70 Identities=13% Similarity=0.141 Sum_probs=51.7
Q ss_pred EEEECCCCceEEE-EeCCCCchHHHHHHHHHhhcCCCCCCeEEEeC-CCceeecCCCcCccccCCCCceEEEEEe
Q 040408 103 IRVRFPDNHTLEV-NFHPSETMQSLVDFLRMRVLSRTDVPFYLYTA-PPKRIIKDMSQDFYSAGFIPGAIVYFSY 175 (235)
Q Consensus 103 IRIRFPDg~~lq~-~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t-~P~k~l~d~~~tL~elgL~Psall~~~~ 175 (235)
|+|++ .|..+.. .+.+++|+.+|.+.| .+...-+...-.|+.. +-.+.+.| +.+|.++|+.+...|++.-
T Consensus 10 i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I-~~~~gip~~~QkLi~~k~~Gk~L~D-~~~L~~~~i~~g~~l~l~~ 81 (90)
T 1v5t_A 10 IIVKW-GGQEYSVTTLSEDDTVLDLKQFL-KTLTGVLPERQKLLGLKVKGKPAEN-DVKLGALKLKPNTKIMMMG 81 (90)
T ss_dssp EEEEE-TTEEEEECSCCSSSBHHHHHHHH-HHHTCCCTTTCEEESCEETTEECCT-TSBHHHHTCCTTEEEEEEC
T ss_pred EEEEE-CCEEEEEEEeCCCCCHHHHHHHH-HHHHCcCHHHeEEEeeccCCcCcCC-CCCHHHcCCCCCCEEEEEe
Confidence 78887 6777777 888999999999999 5555444455566522 22356654 6799999999999888863
No 72
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=93.41 E-value=0.78 Score=35.10 Aligned_cols=69 Identities=12% Similarity=0.173 Sum_probs=50.7
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCC--------CCCCeEEEeCCCceeecCCCcCccccCCCCc--eEEE
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSR--------TDVPFYLYTAPPKRIIKDMSQDFYSAGFIPG--AIVY 172 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~--------~~~~F~L~~t~P~k~l~d~~~tL~elgL~Ps--all~ 172 (235)
|+||.-+|..+...+.+++|+.+|-+.| ...... +.....|.. -.++|.| +.||.++++... .+||
T Consensus 19 I~vKtl~G~t~~lev~~s~TV~~lK~kI-~~~~p~dwke~~p~p~~qqrLIy--~GK~LeD-~~TL~~y~I~~~~~~tlh 94 (116)
T 1wgh_A 19 LRLILVSGKTKEFLFSPNDSASDIAKHV-YDNWPMDWEEEQVSSPNILRLIY--QGRFLHG-NVTLGALKLPFGKTTVMH 94 (116)
T ss_dssp EEEECSSSCEEEEEECTTCBHHHHHHHH-HHSSSCCSSCCCCCCTTTEEEEE--TTEEECS-SCBTTTTTCCSSCEEEEE
T ss_pred EEEEeCCCCEEEEEECCcCHHHHHHHHH-HHhcccccccCCCCChHHEEEEE--CCcCCCC-CCcHHHcCCCCCCceEEE
Confidence 8888899999999999999999999999 553211 233456654 3467755 689999998544 5666
Q ss_pred EEe
Q 040408 173 FSY 175 (235)
Q Consensus 173 ~~~ 175 (235)
+..
T Consensus 95 Lvl 97 (116)
T 1wgh_A 95 LVA 97 (116)
T ss_dssp EEE
T ss_pred EEc
Confidence 654
No 73
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=93.35 E-value=0.37 Score=38.56 Aligned_cols=73 Identities=12% Similarity=0.115 Sum_probs=56.7
Q ss_pred ceeEEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEeC
Q 040408 99 KAVIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYD 176 (235)
Q Consensus 99 ~~~~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~~ 176 (235)
... |.|+..+|..+.....+++|+.+|-..| .....-+.....|+.. .+.+.| +.+|.++|+.+...|++...
T Consensus 20 ~m~-i~Vk~~~g~~~~l~v~~~~tV~~lK~~I-~~~~gip~~~QrL~~~--g~~L~d-~~tL~~~~i~~~~~l~l~~~ 92 (172)
T 3u30_A 20 HMQ-IFVKTLTGKTITLEVEPSDTIENVKAKI-QDKEGIPPDQQRLIFA--GKQLED-GRTLSDYNIQKESTLHLVLR 92 (172)
T ss_dssp CEE-EEEEETTTEEEEEEECTTCBHHHHHHHH-HHHHCCCGGGEEEEET--TEECCT-TCBTGGGTCCTTCEEEEEEC
T ss_pred cEE-EEEEeCCCCEEEEEECCCCcHHHHHHHH-HHHHCcChHHEEEEEC--Cccccc-cCCHhHcCCcccceeeeeec
Confidence 345 8899899998899999999999999999 5555444445566643 467755 68999999999988888753
No 74
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=93.01 E-value=0.23 Score=36.24 Aligned_cols=66 Identities=8% Similarity=0.054 Sum_probs=49.3
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEE
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFS 174 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~ 174 (235)
|+|++ .|..+...+.+++|+.+|.+.| .....-+...-.|+ +..+.+ |+. +|.++|+.....|++.
T Consensus 20 i~Vk~-~g~~~~i~v~~~~TV~~LK~~I-~~~tgip~~~QrL~--~~Gk~L-dd~-tL~~~~i~~g~~i~lv 85 (95)
T 1v86_A 20 LKIIW-NKTKHDVKVPLDSTGSELKQKI-HSITGLPPAMQKVM--YKGLVP-EDK-TLREIKVTSGAKIMVV 85 (95)
T ss_dssp EEEEE-TTEEEEEEECTTSBHHHHHHHH-HHHHCSCSTTCCCB--SSSBCC-SSS-BHHHHCCCTTEEEEEC
T ss_pred EEEEE-CCEEEEEEECCCCcHHHHHHHH-HHHHCcCHHHeEEE--ECCeeC-CcC-cHHHCCCCCCCEEEEE
Confidence 88886 4777788999999999999999 55554333344444 344566 434 9999999999998885
No 75
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=92.69 E-value=0.56 Score=36.56 Aligned_cols=72 Identities=11% Similarity=0.164 Sum_probs=51.5
Q ss_pred EEEEECCCCceE-EEEeCCCCchHHHHHHHHHhhcC-C-CCC-----CeEEEeCCCceeecCCCcCccccCCCCc-----
Q 040408 102 IIRVRFPDNHTL-EVNFHPSETMQSLVDFLRMRVLS-R-TDV-----PFYLYTAPPKRIIKDMSQDFYSAGFIPG----- 168 (235)
Q Consensus 102 ~IRIRFPDg~~l-q~~F~~~etl~~l~~fV~~~~L~-~-~~~-----~F~L~~t~P~k~l~d~~~tL~elgL~Ps----- 168 (235)
-|+||..+|..+ ...|.+++|+.+|-+.| ..... + ... .-.|.. -.++|.| +.||.++++-..
T Consensus 18 ~i~~kt~~G~~i~~l~v~psdTV~~lK~kI-~~~~p~dkegiP~~~~qQrLIy--~GK~LeD-~~TLsdy~I~~~~~~~~ 93 (126)
T 1se9_A 18 EIKFRLTDGSDIGPKAFPDATTVSALKETV-ISEWPREKENGPKTVKEVKLIS--AGKVLEN-SKTVKDYRSPVSNLAGA 93 (126)
T ss_dssp EEEEEETTSCEEEEEEECTTCBHHHHHHHH-HHHSCTTCSSSCCSGGGEEEEE--TTEECCT-TSBGGGGSCCTTSCTTC
T ss_pred EEEEEECCCCEEEeeecCccCHHHHHHHHH-HhhcccccccCCCChhhEEEEE--CCeECcC-CCcHHHcCCCcCCccCC
Confidence 399999999877 68999999999999999 55542 2 112 234543 3467755 689999988755
Q ss_pred -eEEEEEeCc
Q 040408 169 -AIVYFSYDD 177 (235)
Q Consensus 169 -all~~~~~~ 177 (235)
.++++..-.
T Consensus 94 v~tmhlVlrl 103 (126)
T 1se9_A 94 VTTMHVIIQA 103 (126)
T ss_dssp CEEEEEEECC
T ss_pred cEEEEEEecc
Confidence 677776543
No 76
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=92.46 E-value=0.63 Score=34.16 Aligned_cols=71 Identities=11% Similarity=0.020 Sum_probs=53.1
Q ss_pred EEEECCCCc--eEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCC-Cce--eecCCCcCccccCCCCceEEEEE
Q 040408 103 IRVRFPDNH--TLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAP-PKR--IIKDMSQDFYSAGFIPGAIVYFS 174 (235)
Q Consensus 103 IRIRFPDg~--~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~-P~k--~l~d~~~tL~elgL~Psall~~~ 174 (235)
|.|+-+.+. .++..|.+++|+++|-+-| .....-+...-.|+... ++. .+.+++++|.+.|+.+.+.|++.
T Consensus 18 l~It~s~~~~~~~~~~v~~~~TV~~LK~kI-~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlv 93 (95)
T 2kjr_A 18 VNVSNSHNDAVAFEVKLAKDLTVAQLKTKL-EILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVV 93 (95)
T ss_dssp EEEEESSCSCEEEEEEEETTCBHHHHHHHH-HHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEE
T ss_pred EEEEECCCCceEEEEEeCccCHHHHHHHHH-HHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEE
Confidence 677776664 7999999999999999999 66655455555665542 442 23356789999999999998875
No 77
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=92.38 E-value=0.024 Score=43.86 Aligned_cols=71 Identities=10% Similarity=0.056 Sum_probs=0.0
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEeCc
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYDD 177 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~~~ 177 (235)
|.|+..+|..+...+.+++|+.+|-+.| .....-+.....|+ +..+.+.| +.+|.++|+...+.|++....
T Consensus 3 I~Vk~~~G~~~~l~v~~~~TV~~LK~~I-~~~~gip~~~QrLi--~~Gk~L~D-~~tL~~~~I~~gsti~l~~rl 73 (128)
T 3u5e_m 3 IFVKTLTGKTITLEVESSDTIDNVKSKI-QDKEGIPPDQQRLI--FAGKQLED-GRTLSDYNIQKESTLHLVLRL 73 (128)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred EEEEeCCCCEEEEEeCCCCCHHHHHHHH-HHHhCcChHHEEEE--ECCEECCC-CCchhhhccCCCCEEEEEEEc
Confidence 6788899998899999999999999999 55544333444554 34466654 789999999999999988643
No 78
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=91.76 E-value=0.7 Score=35.80 Aligned_cols=71 Identities=11% Similarity=0.147 Sum_probs=51.4
Q ss_pred eeEEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCC--------CCCeEEEeCCCceeecCCCcCccccCCCCc--e
Q 040408 100 AVIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRT--------DVPFYLYTAPPKRIIKDMSQDFYSAGFIPG--A 169 (235)
Q Consensus 100 ~~~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~--------~~~F~L~~t~P~k~l~d~~~tL~elgL~Ps--a 169 (235)
.. |+|+..+|..+...|.+++|+.+|-+.| ....... .....|.. -.++|.| +.||.++++... .
T Consensus 18 m~-I~vktl~G~~~~lev~~s~TV~~lK~~I-~~~~p~dwke~ip~~~~~qrLIy--~GK~LeD-~~TL~~y~I~~~~~~ 92 (125)
T 2gow_A 18 IN-LRLILVSGKTKEFLFSPNDSASDIAKHV-YDNWPMDWEEEQVSSPNILRLIY--QGRFLHG-NVTLGALKLPFGKTT 92 (125)
T ss_dssp EE-EEEECTTSCEEEEEECTTSBHHHHHHHH-HSSCCCSCCCCTTCCGGGEEEES--SSSEEES-SCBTGGGCCCTTSEE
T ss_pred EE-EEEEeCCCCEEEEEeCCccHHHHHHHHH-HHHCCcccccCCCCChHHEEEEE--CCcCCCC-CCcHHHcCCCCCCce
Confidence 44 8888899999999999999999999999 5533211 22345653 4467765 689999998754 3
Q ss_pred EEEEEe
Q 040408 170 IVYFSY 175 (235)
Q Consensus 170 ll~~~~ 175 (235)
+|++..
T Consensus 93 tlhlv~ 98 (125)
T 2gow_A 93 VMHLVA 98 (125)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 566654
No 79
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=91.45 E-value=1 Score=32.57 Aligned_cols=73 Identities=14% Similarity=-0.030 Sum_probs=52.9
Q ss_pred eeEEEEECCCCc-eEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCC--Ccee--ecCCCcCccccCCCCceEEEEE
Q 040408 100 AVIIRVRFPDNH-TLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAP--PKRI--IKDMSQDFYSAGFIPGAIVYFS 174 (235)
Q Consensus 100 ~~~IRIRFPDg~-~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~--P~k~--l~d~~~tL~elgL~Psall~~~ 174 (235)
.. |.|+...+. .++..|.+++|+++|.+.| .....-+...-.|+... ++.+ +.+++++|.+.|+.....||+.
T Consensus 8 v~-l~I~~~~~~~~~~~~v~~~~TV~~lK~ki-~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~ 85 (95)
T 1v6e_A 8 VM-VFISSSLNSFRSEKRYSRSLTIAEFKCKL-ELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI 85 (95)
T ss_dssp EE-EEEEETTSSSCEEEEECTTSBHHHHHHHH-HHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEB
T ss_pred EE-EEEEECCCCeeEEEEcCccCHHHHHHHHH-HHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEE
Confidence 45 778876553 5889999999999999999 56655444445555432 2331 3355789999999999999886
No 80
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=91.45 E-value=0.76 Score=35.46 Aligned_cols=70 Identities=20% Similarity=0.300 Sum_probs=52.7
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCC-------ceEEEEEe
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIP-------GAIVYFSY 175 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~P-------sall~~~~ 175 (235)
||||- ..+.+.....+++|+.+|-.-| .+...-+...-.|+. -.+.+.| ++||.++|+.. .++|++.+
T Consensus 5 l~Ikr-~ktTI~ldve~sdTV~~lK~kI-~~~~giPp~qQrLI~--~Gk~LeD-~kTL~dy~I~~~ta~~q~~atl~Lvl 79 (118)
T 4ajy_B 5 LMIRR-HKTTIFTDAKESSTVFELKRIV-EGILKRPPDEQRLYK--DDQLLDD-GKTLGECGFTSQTARPQAPATVGLAF 79 (118)
T ss_dssp EEEEE-BTEEEEEEEETTSBHHHHHHHH-HHHHCCCGGGEEEEE--TTEECCT-TSBTTTTTCCGGGSBTTBCEEEEEEE
T ss_pred EEEec-CCEEEEEEcCCCChHHHHHHHH-HHHHCCCHHHeEEEe--CCeECCC-cCCHHHcCCCcCcccCCCCCEEEEEE
Confidence 66664 3556777888999999999999 666554444456764 4477754 78999999999 89999997
Q ss_pred Cc
Q 040408 176 DD 177 (235)
Q Consensus 176 ~~ 177 (235)
..
T Consensus 80 r~ 81 (118)
T 4ajy_B 80 RA 81 (118)
T ss_dssp CC
T ss_pred ec
Confidence 54
No 81
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=91.40 E-value=0.73 Score=36.76 Aligned_cols=69 Identities=13% Similarity=0.131 Sum_probs=53.5
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEe
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSY 175 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~ 175 (235)
|.|+..+|..+...+.+++|+.+|-+-| .....-+.....|+.. .+.+.| +.+|.++|+.....|++..
T Consensus 99 i~Vk~~~g~~~~l~v~~~~tV~~lK~~I-~~~~gip~~~q~L~~~--g~~L~D-~~tL~~y~i~~g~tl~l~~ 167 (172)
T 3u30_A 99 IFVKTLTGKTITLEVEPSDTIENVKAKI-QDKEGIPPDQQRLIFA--GKQLED-GRTLSDYNIQKESTLHLVL 167 (172)
T ss_dssp EEEEESSCCEEEEEECTTCBHHHHHHHH-HHHHCCCGGGCCEEET--TEECCT-TSBSGGGTCCTTCEEEECC
T ss_pred ceeecccCcceeEEecCCCCHHHHHHHH-HHHhCCCceeEEEEEC--CccCCC-CCcHHHhCCCCCCEEEEEE
Confidence 6677778888888999999999999999 5554444455667643 466654 6899999999999999864
No 82
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=90.51 E-value=1.1 Score=39.93 Aligned_cols=72 Identities=13% Similarity=0.116 Sum_probs=56.3
Q ss_pred ceeEEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEe
Q 040408 99 KAVIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSY 175 (235)
Q Consensus 99 ~~~~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~ 175 (235)
... |.||..+|..+...+.+++|+.+|.+.| .....-+...-.|+.. .+.|.| +.+|.++|+...+.|++..
T Consensus 233 ~Mq-I~VKtl~Gk~~~leV~~s~TV~dLK~kI-~~~~GIp~~~QRLi~~--Gk~L~D-~~TLsdygI~~gstL~Lvl 304 (307)
T 3ai5_A 233 SMQ-IFVKTLTGKTITLEVEPSDTIENVKAKI-QDKEGIPPDQQRLIFA--GKQLED-GRTLSDYNIQKESTLHLVL 304 (307)
T ss_dssp CEE-EEEECTTSCEEEEEECTTCBHHHHHHHH-HHHHCCCGGGCEEEET--TEECCT-TSBTGGGTCCTTCEEEEEC
T ss_pred eEE-EEEEeCCCCEEEEEECCCCcHHHHHHHH-HHHHCcChHHEEEEeC--CeecCC-CCCHHHcCCCCCCEEEEEE
Confidence 345 8899999999999999999999999999 5655444445566643 467754 6899999999999998863
No 83
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=90.44 E-value=3 Score=28.48 Aligned_cols=68 Identities=6% Similarity=-0.016 Sum_probs=52.6
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEE
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFS 174 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~ 174 (235)
|+|+-.||..+.....++++++.|.+.. .+...-+...+.|... .+.+. .+.|..++|+-....|.+.
T Consensus 4 lkV~~~~g~~v~~~v~~~t~l~kl~~~y-~~~~gi~~~~~rf~fd--G~~l~-~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 4 LKVAGQDGSVVQFKIKRHTPLSKLMKAY-CERQGLSMRQIRFRFD--GQPIN-ETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEECTTSCEEEEEECTTSCTHHHHHHH-HHHHTCCTTTCEEEET--TEECC-TTCCTTTTTCCTTEEEEEE
T ss_pred EEEECCCCCEEEEEECCCChHHHHHHHH-HHHhCCCcceEEEEEC--CEEcC-CCCCHHHcCCCCCCEEEEE
Confidence 8999999999999999999999999999 5555544456666643 34443 3579999999988888763
No 84
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=90.10 E-value=0.056 Score=43.45 Aligned_cols=71 Identities=10% Similarity=0.056 Sum_probs=0.0
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEeCc
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYDD 177 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~~~ 177 (235)
|.|+..+|..+...+.+++|+.+|-+.| .....-+.....|+ +..+.|.| +.+|.++|+...+.|++....
T Consensus 3 I~VK~l~G~~~~l~V~~~~TV~~LK~~I-~~~~gip~~~QrLi--~~Gk~L~D-~~tL~dygI~~gstL~Lvlrl 73 (152)
T 3u5c_f 3 IFVKTLTGKTITLEVESSDTIDNVKSKI-QDKEGIPPDQQRLI--FAGKQLED-GRTLSDYNIQKESTLHLVLRL 73 (152)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred EEEEeCCCCEEEEEECCCCCHHHHHHHH-HHHhCCCHHHEEEE--ECCEEccc-cCcHHHcCCCCCCEEEEEeec
Confidence 7788999998888999999999999999 55443333334454 34466654 679999999999998887643
No 85
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=89.73 E-value=2.5 Score=31.10 Aligned_cols=71 Identities=10% Similarity=0.150 Sum_probs=51.3
Q ss_pred eeEEEEECCCCceEEE--EeCCCCchHHHHHHHHHhhcCC-CCCCeEEEeCCCceeecCCCcCccccCC-CCceEEEEEe
Q 040408 100 AVIIRVRFPDNHTLEV--NFHPSETMQSLVDFLRMRVLSR-TDVPFYLYTAPPKRIIKDMSQDFYSAGF-IPGAIVYFSY 175 (235)
Q Consensus 100 ~~~IRIRFPDg~~lq~--~F~~~etl~~l~~fV~~~~L~~-~~~~F~L~~t~P~k~l~d~~~tL~elgL-~Psall~~~~ 175 (235)
.. |-|+-.+|..+.. .+.+++|+.+|-+.| .+.... +...-.|+. -.+.|.| +.+|.++|+ .....|++..
T Consensus 20 m~-I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I-~~~~~gip~~~QrLi~--~Gk~L~D-~~tL~dy~I~~~g~ti~lmv 94 (98)
T 4a20_A 20 VH-LTLKKIQAPKFSIEHDFSPSDTILQIKQHL-ISEEKASHISEIKLLL--KGKVLHD-NLFLSDLKVTPANSTITVMI 94 (98)
T ss_dssp EE-EEEEECSSSCEEEEEEECTTCBHHHHHHHH-HHTTSCSCGGGEEEEE--TTEEECT-TCBGGGSCCBTTBCEEEEEE
T ss_pred EE-EEEEcCCCCEEEEEEecCCCChHHHHHHHH-HHHhcCCChhhEEEEE--CCEECcC-cCCHHHcCcCCCCCEEEEEE
Confidence 45 8889999975444 677999999999998 333322 233456654 3477765 689999999 8888888865
No 86
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.57 E-value=1.5 Score=31.47 Aligned_cols=70 Identities=13% Similarity=0.175 Sum_probs=47.7
Q ss_pred EEEECCCCceE--EE-EeCCCCchHHHHHHHHHhhcC-CCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEE
Q 040408 103 IRVRFPDNHTL--EV-NFHPSETMQSLVDFLRMRVLS-RTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFS 174 (235)
Q Consensus 103 IRIRFPDg~~l--q~-~F~~~etl~~l~~fV~~~~L~-~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~ 174 (235)
|-|+-..|... .. .+.+++|+.+|.+.| ..... -+...-.|...+-.+++.| +.+|.+.|+...+.|||.
T Consensus 13 I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I-~~~~~~i~~~~QrL~~~~~Gk~L~D-~~tL~~y~i~~~stl~~K 86 (88)
T 2dzj_A 13 VEILDAKTREKLCFLDKVEPHATIAEIKNLF-TKTHPQWYPARQSLRLDPKGKSLKD-EDVLQKLPVGTTATLYFR 86 (88)
T ss_dssp EEEEESSSCCCCEEEEEECSSCBHHHHHHHH-HHHCSSSCTTTCCEESSTTSCCCCT-TCBTTTSSCCSEEEEEEC
T ss_pred EEEECCCCCEEeeEEeEcCCCCcHHHHHHHH-HHHhcCCChHHeEEEecCCCcCcCC-CCCHHHcCCCCCCEEEEE
Confidence 56665554332 35 788999999999999 55222 1223344554444567754 689999999999999885
No 87
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=89.17 E-value=1.5 Score=39.15 Aligned_cols=71 Identities=10% Similarity=0.129 Sum_probs=50.9
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCC-CCCCeEEEeCCCc----ee--ecCCCcCccccCCCCceEEEEE
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSR-TDVPFYLYTAPPK----RI--IKDMSQDFYSAGFIPGAIVYFS 174 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~-~~~~F~L~~t~P~----k~--l~d~~~tL~elgL~Psall~~~ 174 (235)
++|+||||+.....+.+..|+++|.+-| ...|.- ...-|.|+..-+. .. .-+.++++.+-+..+.-.++|.
T Consensus 88 ~~V~l~dg~~~~~~vd~~tt~~el~~~v-~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~fr 165 (371)
T 3ivf_A 88 LKIRMLDGTVKTIMVDDSKTVTDMLMTI-CARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLLR 165 (371)
T ss_dssp EEEECTTSCEEEEEEETTSBHHHHHHHH-HHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEEE
T ss_pred EEEECcCCCEEEEEECCCCCHHHHHHHH-HHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEEE
Confidence 9999999999999999999999999999 666653 3557999876431 11 1245667776555445556664
No 88
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.98 E-value=1.8 Score=32.11 Aligned_cols=73 Identities=18% Similarity=0.168 Sum_probs=50.4
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEeCchh
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYDDAY 179 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~~~~~ 179 (235)
++|++..+ .+...+.+++|+.+|-..| .+...-+...=.|+.-++.+ +.| +.+|.++|+.+...|++...+..
T Consensus 12 ~~vk~~Gk-~~~v~v~~~~TV~~LK~~I-~~~tgIpp~~QkLi~~~~gk-L~D-~~tLs~~~I~~gstL~lvl~~~~ 84 (100)
T 2dzm_A 12 FRVEYRDR-NVDVVLEDTCTVGEIKQIL-ENELQIPVSKMLLKGWKTGD-VED-STVLKSLHLPKNNSLYVLTPDLP 84 (100)
T ss_dssp EEEECSSC-EEEEEEETTSBHHHHHHHH-HHHHCCCTTTCCEECCSSSC-CCT-TSBHHHHCCCSEEEEEECCSSSC
T ss_pred EEEEeCCe-EEEEEECCCCcHHHHHHHH-HHHHCCChhHeEEEccCCCC-CCC-cCCHHHcCCCCCCEEEEEecCCC
Confidence 77888655 5577899999999999999 44443222222243223444 544 68999999999999999765543
No 89
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=88.86 E-value=2 Score=30.94 Aligned_cols=70 Identities=10% Similarity=0.165 Sum_probs=50.5
Q ss_pred EEEECCCCceEEE--EeCCCCchHHHHHHHHHhhcC-CCCCCeEEEeCCCceeecCCCcCccccCC-CCceEEEEEeC
Q 040408 103 IRVRFPDNHTLEV--NFHPSETMQSLVDFLRMRVLS-RTDVPFYLYTAPPKRIIKDMSQDFYSAGF-IPGAIVYFSYD 176 (235)
Q Consensus 103 IRIRFPDg~~lq~--~F~~~etl~~l~~fV~~~~L~-~~~~~F~L~~t~P~k~l~d~~~tL~elgL-~Psall~~~~~ 176 (235)
|-|+-.+|..+.. .+.+++|+.+|-+.| .+... -+.....|+. -.+++.| +.+|.++|+ ...+.|++.+.
T Consensus 4 I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I-~~~~~gip~~~QrLi~--~Gk~L~D-~~tL~~y~I~~~~stl~v~~~ 77 (87)
T 2lxa_A 4 LTLKKIQAPKFSIEHDFSPSDTILQIKQHL-ISEEKASHISEIKLLL--KGKVLHD-NLFLSDLKVTPANSTITVMIK 77 (87)
T ss_dssp EEEEECSSSCEECCEECCTTCBHHHHHHHH-HHTTSCSSSTTEEEEE--TTEECCT-TCBHHHHCCCGGGCEEEEEEC
T ss_pred EEEEcCCCCEEEEEEcCCCCCcHHHHHHHH-HHHhcCCChHHEEEEE--CCEECcC-cCCHHHcCCCCCCCEEEEEcC
Confidence 7788888975544 477999999999998 23332 2345567764 3477765 679999999 57888888763
No 90
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=88.85 E-value=3.7 Score=29.70 Aligned_cols=75 Identities=5% Similarity=-0.026 Sum_probs=57.1
Q ss_pred CceeEEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEeCc
Q 040408 98 RKAVIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYDD 177 (235)
Q Consensus 98 ~~~~~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~~~ 177 (235)
.+.. |+|+-.||..+.....++++++.|++.. .+...-+...+.|+.. .+.|. .+.|..++++--..+|++.+..
T Consensus 16 ~~i~-ikV~~~~g~~i~~~v~~~t~l~kl~~~y-~~~~gi~~~~~rf~fd--G~~l~-~~~Tp~dl~medgD~Idv~~~q 90 (93)
T 2d07_B 16 DHIN-LKVAGQDGSVVQFKIKRHTPLSKLMKAY-CERQGLSMRQIRFRFD--GQPIN-ETDTPAQLEMEDEDTIDVFQQQ 90 (93)
T ss_dssp CEEE-EEEECTTSCEEEEEEETTSCHHHHHHHH-HHHHTCCGGGEEEEET--TEECC-TTCCTTTTTCCTTEEEEEEECC
T ss_pred CeEE-EEEECCCCCEEEEEEccCCHHHHHHHHH-HHHhCCCccceEEEEC--CEEcC-CCCCHHHcCCCCCCEEEEEeec
Confidence 3455 9999999998999999999999999999 5555544455666543 34443 3579999999999999887653
No 91
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=88.55 E-value=1.3 Score=31.68 Aligned_cols=65 Identities=6% Similarity=-0.009 Sum_probs=46.1
Q ss_pred CCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEe-CC----CceeecCCCcCccccCCCCceEEEEEe
Q 040408 109 DNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYT-AP----PKRIIKDMSQDFYSAGFIPGAIVYFSY 175 (235)
Q Consensus 109 Dg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~-t~----P~k~l~d~~~tL~elgL~Psall~~~~ 175 (235)
++...+..|.+++|+.+|-+-| .....-+...=.|.. .. ..+.+ +++.+|.+.|+.....||+.-
T Consensus 13 ~~~~~E~r~~~s~TI~~lK~ki-~~~~Gip~~~QrLi~~~~~~~~~g~~l-~d~~tL~~Y~i~~g~~ihlvd 82 (86)
T 4b6w_A 13 RMRVPEKRYGLAQTIESIKENV-FTHFATPPEYMQLQLIDDRGITIEKNM-ANDKQLGYYQCRDEFVIHVVD 82 (86)
T ss_dssp SCCEEEEEEETTSBHHHHHHHH-HTTSCCCGGGEEEEEECTTSCEEESSC-CTTSBGGGGTCCTTCEEEEEE
T ss_pred CCeEEEEEcCccCcHHHHHHHH-HHHHCCCHHHEEEEEecCCCCceeeEc-CCCCCHHHCCCCCCCEEEEEe
Confidence 4556899999999999999999 555443433334432 11 12333 557899999999999999873
No 92
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=88.38 E-value=5.6 Score=28.73 Aligned_cols=73 Identities=5% Similarity=-0.028 Sum_probs=57.0
Q ss_pred eeEEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEeCc
Q 040408 100 AVIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYDD 177 (235)
Q Consensus 100 ~~~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~~~ 177 (235)
.. |+|+-.||..+.....++++++.|.+.. .+-..-+...+.|... .+.+. .+.|..++++--..+|.+....
T Consensus 6 i~-ikVk~~~g~~v~~~vk~~t~l~kl~~~y-~~~~gi~~~~~rf~Fd--G~~l~-~~~Tp~dl~medgD~Idv~~~q 78 (91)
T 2io0_B 6 IN-LKVAGQDGSVVQFKIKRHTPLSKLMKAY-CERQGLSMRQIRFRFD--GQPIN-ETDTPAQLEMEDEDTIDVFQQQ 78 (91)
T ss_dssp EE-EEEECTTSCEEEEEEETTSCTHHHHHHH-HHHTTCCSTTEEEEET--TEECC-TTCCTTTTTCCTTEEEEEEECC
T ss_pred EE-EEEECCCCCEEEEEECCCChHHHHHHHH-HHHhCCCcccEEEEEC--CEEcC-CCCCHHHcCCCCCCEEEEEEec
Confidence 45 8999999999999999999999999999 5555544456676643 34443 3579999999999999998754
No 93
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=88.10 E-value=3.4 Score=30.75 Aligned_cols=75 Identities=5% Similarity=-0.028 Sum_probs=57.3
Q ss_pred CceeEEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEeCc
Q 040408 98 RKAVIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYDD 177 (235)
Q Consensus 98 ~~~~~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~~~ 177 (235)
.+.. |+|+-.||..+......++++..|++.. .+...-+...+.|+.. .+ .|. .+.|..++++--..+|++.+..
T Consensus 23 ~~I~-IkVk~~~g~~i~~kVk~~t~l~kL~~~y-~ek~gi~~~~~rf~Fd-G~-~l~-~~~Tp~dl~medgD~Idv~~~q 97 (104)
T 1wz0_A 23 DHIN-LKVAGQDGSVVQFKIKRHTPLSKLMKAY-CERQGLSMRQIRFRFD-GQ-PIN-ETDTPAQLEMEDEDTIDVFQQQ 97 (104)
T ss_dssp CCEE-EEEECSSSCEEEEEECTTSCHHHHHHHH-HHHHTCCTTTSCEESS-SS-BCC-TTSCTTTTTCCTTEEEEECCCC
T ss_pred CeEE-EEEECCCCCEEEEEEcCCChHHHHHHHH-HHHhCCCcceEEEEEC-CE-EcC-CCCCHHHcCCCCCCEEEEEEec
Confidence 3455 9999999999999999999999999999 5555444445666543 33 343 3579999999999999987754
No 94
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=88.05 E-value=3.6 Score=31.16 Aligned_cols=72 Identities=11% Similarity=0.091 Sum_probs=52.6
Q ss_pred EEEECCCCc-eEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCC--Ccee--ecCCCcCccccCCCCceEEEEEe
Q 040408 103 IRVRFPDNH-TLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAP--PKRI--IKDMSQDFYSAGFIPGAIVYFSY 175 (235)
Q Consensus 103 IRIRFPDg~-~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~--P~k~--l~d~~~tL~elgL~Psall~~~~ 175 (235)
|.|+-..+. .++..|.++.|+++|..-| .....-+...-.|.... ++.+ +.+++++|.+.|+.+.+.||+.-
T Consensus 9 l~V~~~~~~~~~e~~v~~~~TV~~lK~ki-~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd 85 (122)
T 1t0y_A 9 LEITTNATDFPMEKKYPAGMSLNDLKKKL-ELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVD 85 (122)
T ss_dssp EEEEESSCCSCEEEEEETTSBHHHHHHHH-HHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEE
T ss_pred EEEEECCCCccEEEEeCCCCcHHHHHHHH-HHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEe
Confidence 677765553 6889999999999999999 56655444555665432 2322 23557899999999999999984
No 95
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=88.01 E-value=4.1 Score=29.57 Aligned_cols=76 Identities=5% Similarity=-0.039 Sum_probs=58.2
Q ss_pred ceeEEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEeCch
Q 040408 99 KAVIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYDDA 178 (235)
Q Consensus 99 ~~~~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~~~~ 178 (235)
+.. |+|+-.||..+.....++++++.|.+.+ .+...-+...+.|... .+.+. .+.|+.++++--..+|++.....
T Consensus 7 ~i~-ikVk~~~g~~i~~~v~~~t~l~kl~~~y-~~~~gi~~~~~rf~Fd--G~~l~-~~~Tp~dl~medgD~Idv~~~~~ 81 (94)
T 2io1_B 7 HIN-LKVAGQDGSVVQFKIKRHTPLSKLMKAY-CERQGLSMRQIRFRFD--GQPIN-ETDTPAQLEMEDEDTIDVFQQQT 81 (94)
T ss_dssp EEE-EEEECTTSCEEEEEEETTSCTHHHHHHH-HHHHTCCGGGEEEEET--TEECC-TTCCTTTTTCCTTCEEEEEECCE
T ss_pred eEE-EEEECCCCCEEEEEECCCCHHHHHHHHH-HHHhCCCcccEEEEEC--CEEcC-CCCCHHHcCCCCCCEEEEEEecc
Confidence 345 8899899999999999999999999999 5555544455666543 34443 35799999999999999988654
Q ss_pred h
Q 040408 179 Y 179 (235)
Q Consensus 179 ~ 179 (235)
.
T Consensus 82 G 82 (94)
T 2io1_B 82 G 82 (94)
T ss_dssp E
T ss_pred C
Confidence 3
No 96
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=86.96 E-value=1.9 Score=33.16 Aligned_cols=69 Identities=20% Similarity=0.306 Sum_probs=50.6
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCC-------CceEEEEEe
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFI-------PGAIVYFSY 175 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~-------Psall~~~~ 175 (235)
|+||- ..+.+.....+++|+.+|-..| .....-+.....|+ +-.+.+.| ++||.++|+. ..+.|++..
T Consensus 5 l~ir~-~ktti~lev~~sdTV~~lK~kI-~~~egIP~~qQrLi--~~Gk~LeD-~~TLsdy~I~~~~a~~q~~stL~L~l 79 (118)
T 2fnj_B 5 LMIRR-HKTTIFTDAKESSTVFELKRIV-EGILKRPPEEQRLY--KDDQLLDD-GKTLGECGFTSQTARPQAPATVGLAF 79 (118)
T ss_dssp EEEEE-BTEEEEEEEETTSBHHHHHHHH-HHHHCCCGGGEEEE--ETTEECCT-TSBHHHHTCCTTTSBTTBCEEEEEEE
T ss_pred EEEec-CCEEEEEEeCCcChHHHHHHHH-HHHhCCCHHHeEEE--ECCeECCC-CCCHHHcCcccccccCCCCCEEEEEe
Confidence 56653 2245778889999999999999 56555455567777 34567754 7899999999 567788876
Q ss_pred C
Q 040408 176 D 176 (235)
Q Consensus 176 ~ 176 (235)
-
T Consensus 80 r 80 (118)
T 2fnj_B 80 R 80 (118)
T ss_dssp B
T ss_pred c
Confidence 4
No 97
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=86.42 E-value=3.2 Score=30.42 Aligned_cols=71 Identities=10% Similarity=0.121 Sum_probs=51.9
Q ss_pred EEEECCCC--ceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCC--Ccee--ecCCCcCccccCCCCceEEEEE
Q 040408 103 IRVRFPDN--HTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAP--PKRI--IKDMSQDFYSAGFIPGAIVYFS 174 (235)
Q Consensus 103 IRIRFPDg--~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~--P~k~--l~d~~~tL~elgL~Psall~~~ 174 (235)
|.|..... ..++..|.++.|+++|-+-| .....-+...-.|+... ++.+ +.+++++|.+.|+.+.+.|++.
T Consensus 17 l~It~s~~~~~~~e~~v~~~~TV~~LK~kI-e~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlv 93 (97)
T 2kj6_A 17 LHITHANLKSFSADARFSPQMSVEAVKEKL-WKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHII 93 (97)
T ss_dssp EEEEETTSSCCCEEEEECTTCCHHHHHHHH-HHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEE
T ss_pred EEEEECCCCceEEEEEeCCCChHHHHHHHH-HHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEE
Confidence 77776555 37899999999999999999 56655444555665432 2332 3355789999999999998875
No 98
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=85.45 E-value=1.9 Score=39.22 Aligned_cols=69 Identities=14% Similarity=0.127 Sum_probs=52.1
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhcC---CCCCCeEEEeCCCceeecCCCcCccccCCCCceEE-EEEe
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLS---RTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIV-YFSY 175 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~---~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall-~~~~ 175 (235)
|.||..+|..+...+.+++||.+|...| ..... -+.....|+ +..++|.| +++|.++|+.....| ++..
T Consensus 10 I~VKtl~Gk~~~leV~~~~TV~~LK~~I-~~~~~~~gip~~~QrLi--y~GK~L~D-~~tL~dygI~~gstIv~lv~ 82 (368)
T 1oqy_A 10 ITLKTLQQQTFKIRMEPDETVKVLKEKI-EAEKGRDAFPVAGQKLI--YAGKILSD-DVPIRDYRIDEKNFVVVMVT 82 (368)
T ss_dssp EEEEETTTEEEEECCCTTCBHHHHHHHH-HHHTCSSSCCSTEEEEE--SSSSEECS-SSBTTTTCCCTTSCEEEEEE
T ss_pred EEEEeCCCCEEEEEeCCCChHHHHHHHH-HHHhCcCCCChhheEEE--ECCeecCC-cCCHHHcCCCCCCEEEEEEe
Confidence 8889999999999999999999999999 55321 223445565 45678865 689999999988766 5544
No 99
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=85.04 E-value=7.7 Score=26.98 Aligned_cols=70 Identities=13% Similarity=0.244 Sum_probs=52.3
Q ss_pred ceeEEEEECCCCc-eEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEE
Q 040408 99 KAVIIRVRFPDNH-TLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYF 173 (235)
Q Consensus 99 ~~~~IRIRFPDg~-~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~ 173 (235)
+.. |+|+-.||. .+.....++++++.|++.. .+-..-+...+.|+.. .+.+. .+.|..++++--..+|++
T Consensus 7 ~i~-ikV~~~~g~~~i~~~i~~~t~l~kl~~~y-~~~~gi~~~~~rf~fd--G~~l~-~~~Tp~~l~medgD~Idv 77 (79)
T 3a4r_A 7 ELR-LRVQGKEKHQMLEISLSPDSPLKVLMSHY-EEAMGLSGHKLSFFFD--GTKLS-GKELPADLGLESGDLIEV 77 (79)
T ss_dssp CEE-EEEECSSTTCEEEEEECTTSCHHHHHHHH-HHHHTCTTCCCEEEET--TEECC-SCCCHHHHTCCTTCEEEE
T ss_pred EEE-EEEEeCCCCEEEEEEECCCChHHHHHHHH-HHHhCCCcccEEEEEC--CEEcC-CCCCHHHcCCCCCCEEEE
Confidence 455 999999996 8999999999999999999 5554443445666543 34443 357999999988777765
No 100
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=84.20 E-value=2.5 Score=36.77 Aligned_cols=71 Identities=14% Similarity=0.020 Sum_probs=48.9
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCC-CCCCeEEEeCCC--ceeecCCCcCccccCCCCceEEEEE
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSR-TDVPFYLYTAPP--KRIIKDMSQDFYSAGFIPGAIVYFS 174 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~-~~~~F~L~~t~P--~k~l~d~~~tL~elgL~Psall~~~ 174 (235)
++|.|+||+.+...+.+..|.++|.+-| ...|.= +..-|-|+..-+ ....-|.++.+.+..-.+...++|.
T Consensus 20 ~~V~lldgt~~~~~vd~~tt~~el~~~v-~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~fr 93 (296)
T 3qij_A 20 CKVSLLDDTVYECVVEKHAKGQDLLKRV-CEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTFN 93 (296)
T ss_dssp EEEECTTSCEEEEECCTTCBHHHHHHHH-HHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEEE
T ss_pred EEEEccCCCEEEEEECCCCCHHHHHHHH-HHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEEE
Confidence 8999999999999999999999999999 666653 345588876432 1222355666664432334556666
No 101
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=82.42 E-value=7.5 Score=32.72 Aligned_cols=67 Identities=10% Similarity=0.233 Sum_probs=51.1
Q ss_pred eEEEEeCCCCchHHHHHHHHHhhcCCC-CCCeEEEeCCC---ceeecCCCcCccccCCCCceEEEEEeCchh
Q 040408 112 TLEVNFHPSETMQSLVDFLRMRVLSRT-DVPFYLYTAPP---KRIIKDMSQDFYSAGFIPGAIVYFSYDDAY 179 (235)
Q Consensus 112 ~lq~~F~~~etl~~l~~fV~~~~L~~~-~~~F~L~~t~P---~k~l~d~~~tL~elgL~Psall~~~~~~~~ 179 (235)
.+...|+..+|+++|++.| ...+.-+ ...+.|+.-.. ...|.+.+.||.|++|...-.|.+.-....
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~-~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~d 223 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEM-RKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNED 223 (231)
T ss_dssp EEEEEECTTCBHHHHHHHH-HHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTT
T ss_pred eEEEEecccCcHHHHHHHH-HHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCC
Confidence 4668899999999999999 5665543 45788887432 234456778999999999999999865543
No 102
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=81.14 E-value=6 Score=29.61 Aligned_cols=77 Identities=18% Similarity=0.131 Sum_probs=49.9
Q ss_pred cCCC--ceeEEEEECCCC----ceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCC-CC
Q 040408 95 SKFR--KAVIIRVRFPDN----HTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGF-IP 167 (235)
Q Consensus 95 ~~~~--~~~~IRIRFPDg----~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL-~P 167 (235)
..|+ ... ++|.|-|- ..+...+.+++|+++|-+-| .+-..-+...=.|+ +.++.+ +++.||.+.|+ -.
T Consensus 16 ~~~~~~~i~-l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I-~~k~Gipp~~QRli--~ggkll-~D~~TL~~ygI~~~ 90 (105)
T 4dbg_A 16 EVSPTQDIR-LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMV-FLDYGFPPVLQQWV--IGQRLA-RDQETLHSHGVRQN 90 (105)
T ss_dssp ----CCCEE-EEEEEEESSSCCEEEEEEECTTCBHHHHHHHH-HHHHCCCGGGEEEE--ETTEEE-CTTCBTGGGTCCST
T ss_pred CcCCCCcEE-EEEEEEccCCCCceEEEEECCcChHHHHHHHH-HHHhCCCHHHEEEe--ccCeEc-cCcCcHHHcCCCCC
Confidence 4555 555 67777773 46888888999999999999 44433222222344 345655 44789999999 48
Q ss_pred ceEEEEEeC
Q 040408 168 GAIVYFSYD 176 (235)
Q Consensus 168 sall~~~~~ 176 (235)
...+++--.
T Consensus 91 G~t~hL~l~ 99 (105)
T 4dbg_A 91 GDSAYLYLL 99 (105)
T ss_dssp TCEEEEEEC
T ss_pred CCEEEEEEE
Confidence 888887653
No 103
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=80.87 E-value=6.9 Score=29.40 Aligned_cols=74 Identities=8% Similarity=0.078 Sum_probs=56.5
Q ss_pred ceeEEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEeCc
Q 040408 99 KAVIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYDD 177 (235)
Q Consensus 99 ~~~~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~~~ 177 (235)
... |+|+-.||..+.....++++++.|++.. .+...-+...+.|+.. .+.|. .+.|..++++--..+|.+....
T Consensus 26 ~I~-IkVk~~~g~~i~fkVk~~t~l~kL~~ay-~ek~gi~~~~~rfiFd--G~~L~-~~~Tp~dl~mEDgD~Idv~~~q 99 (110)
T 2k8h_A 26 LVA-VKVVNADGAEMFFRIKSRTALKKLIDTY-CKKQGISRNSVRFLFD--GTPID-ETKTPEELGMEDDDVIDAMVEQ 99 (110)
T ss_dssp CEE-EEEEETTSCCEEEEECTTSSHHHHHHHH-HHHHTCCSSSCEEESS--SCBCC-SSSHHHHHHCSSEEEEEEECCC
T ss_pred eEE-EEEECCCCCEEEEEECCCChHHHHHHHH-HHHhCCCcccEEEEEC--CEEcC-CCCCHHHcCCCCCCEEEEEEcc
Confidence 455 9999999999999999999999999999 5554444456666542 33443 3579999999999999887654
No 104
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=80.71 E-value=12 Score=27.81 Aligned_cols=73 Identities=7% Similarity=0.042 Sum_probs=54.9
Q ss_pred CceeEEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEeC
Q 040408 98 RKAVIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYD 176 (235)
Q Consensus 98 ~~~~~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~~ 176 (235)
.+.. |+|+- ||..+......++++..|++.. .+-..-+...+.|+.. .+.|. .+.|..++++--..+|.+...
T Consensus 30 ~~I~-IkV~~-~g~~i~fkIk~tt~l~kL~~ay-~ek~gi~~~~~rF~Fd--G~rl~-~~~Tp~dl~medgD~Idv~~~ 102 (106)
T 2eke_C 30 THIN-LKVSD-GSSEIFFKIKKTTPLRRLMEAF-AKRQGKEMDSLRFLYD--GIRIQ-ADQTPEDLDMEDNDIIEAHRE 102 (106)
T ss_dssp SEEE-EEEEC-SSCEEEEEEETTSCTHHHHHHH-HHHHTCCGGGEEEEET--TEECC-TTCCTTTTTCCTTEEEEEEEC
T ss_pred CeEE-EEEec-CCcEEEEEeCCCCHHHHHHHHH-HHHhCCCcccEEEEEC--CeEcC-CCCCHHHcCCCCCCEEEEEee
Confidence 4455 89999 9999999999999999999999 5554433445666543 34443 357999999999988888654
No 105
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=80.00 E-value=4.6 Score=34.54 Aligned_cols=70 Identities=19% Similarity=0.204 Sum_probs=48.4
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCC-CCCCeEEEeCCCc--eeecCCCcCccccCC--CCceEEEEE
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSR-TDVPFYLYTAPPK--RIIKDMSQDFYSAGF--IPGAIVYFS 174 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~-~~~~F~L~~t~P~--k~l~d~~~tL~elgL--~Psall~~~ 174 (235)
|+|.|+|| .++..+.+..|+++|++-| ...|.- +..-|.|+..-+. ...-|.++.+.+.+. .+...++|.
T Consensus 4 ~~V~l~d~-~~~~~v~~~tt~~el~~~v-~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr 78 (294)
T 1ef1_A 4 VRVTTMDA-ELEFAIQPNTTGKQLFDQV-VKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFR 78 (294)
T ss_dssp EEEEETTE-EEEEEECTTCBHHHHHHHH-HHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEECCc-eEEEEECCCCcHHHHHHHH-HHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEE
Confidence 89999999 4789999999999999999 566653 3456888864322 222355677776543 233456665
No 106
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=79.97 E-value=6 Score=32.96 Aligned_cols=81 Identities=9% Similarity=0.185 Sum_probs=55.7
Q ss_pred cCCCceeEEEEEC-CCC-ceEEEEeCCCCchHHHHHHHHHhhcCCC-CCCeEEEeCCC---ceeecCCCcCccccCCCCc
Q 040408 95 SKFRKAVIIRVRF-PDN-HTLEVNFHPSETMQSLVDFLRMRVLSRT-DVPFYLYTAPP---KRIIKDMSQDFYSAGFIPG 168 (235)
Q Consensus 95 ~~~~~~~~IRIRF-PDg-~~lq~~F~~~etl~~l~~fV~~~~L~~~-~~~F~L~~t~P---~k~l~d~~~tL~elgL~Ps 168 (235)
..|+-+ |+|.. .+. ..+...|+..+|+++|++.| ...+.-+ ...+.|+.-.. ...+.+.++||.|++|...
T Consensus 124 EvyP~~--l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~-~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~ 200 (217)
T 4a3p_A 124 EVYLTE--LKLCENGNMNNVVTRRFSKADTIDTIEKEI-RKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQG 200 (217)
T ss_dssp CCSCEE--EEEEETTEEEEEEEEEECTTSBHHHHHHHH-HHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTT
T ss_pred EEeccE--EEEEecCCCCcceEEEEcccchHHHHHHHH-HHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCC
Confidence 445443 44433 333 35778999999999999999 5666543 34677775321 2334566789999999999
Q ss_pred eEEEEEeCch
Q 040408 169 AIVYFSYDDA 178 (235)
Q Consensus 169 all~~~~~~~ 178 (235)
-.|.+.....
T Consensus 201 Q~illE~r~~ 210 (217)
T 4a3p_A 201 QVLVIEQKNE 210 (217)
T ss_dssp CEEEEEECCC
T ss_pred CEEEEEEecC
Confidence 9999887543
No 107
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=79.82 E-value=5.4 Score=34.54 Aligned_cols=73 Identities=16% Similarity=0.097 Sum_probs=49.4
Q ss_pred ceeEEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCC-CCCCeEEEeCCCc-eeecCCCcCccccCCC--CceEEEEE
Q 040408 99 KAVIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSR-TDVPFYLYTAPPK-RIIKDMSQDFYSAGFI--PGAIVYFS 174 (235)
Q Consensus 99 ~~~~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~-~~~~F~L~~t~P~-k~l~d~~~tL~elgL~--Psall~~~ 174 (235)
... ++|.|+|| .++..+.+..|+++|.+-| ...|.- +..-|-|+..... ...-|.++.+.+.+.. +...++|.
T Consensus 22 ~~~-~~V~lldg-~~~~~v~~~t~~~el~~~v-~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 22 TFT-VRIVTMDA-EMEFNCEMKWKGKDLFDLV-CRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp EEE-EEEECSSC-EEEEEEETTCBHHHHHHHH-HHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred eeE-EEEEeCCc-eEEEEeCCCCcHHHHHHHH-HHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 344 99999999 6889999999999999999 566653 3456888765111 1223556677665422 33455665
No 108
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=79.82 E-value=5.6 Score=35.42 Aligned_cols=70 Identities=16% Similarity=0.279 Sum_probs=54.7
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCC----CCCCeEEEeCC--Cceee-cCCCcCccccCCCCceEEEEE
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSR----TDVPFYLYTAP--PKRII-KDMSQDFYSAGFIPGAIVYFS 174 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~----~~~~F~L~~t~--P~k~l-~d~~~tL~elgL~Psall~~~ 174 (235)
++|+++ +.+-...|.++-|+.++...|+ +-+.. ++.+|-|+... |++-. -+.++||...|+.....|.+.
T Consensus 6 ~~~~~~-~~~~~~~f~~~~~v~~~~~~i~-e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~ 82 (371)
T 3ivf_A 6 LKISIG-NVVKTMQFEPSTMVYDACRMIR-ERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYR 82 (371)
T ss_dssp EEEEET-TEEEEEEECTTCBHHHHHHHHH-TTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEec-ceeEEEEECCCCCHHHHHHHHH-HhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeecc
Confidence 899999 8888999999999999999994 55542 47889999964 44322 344679999999888777665
No 109
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=78.14 E-value=5.8 Score=38.04 Aligned_cols=71 Identities=17% Similarity=0.115 Sum_probs=48.4
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCC-CCCCeEEEeCCCc--eeecCCCcCccccCCC--CceEEEEE
Q 040408 102 IIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSR-TDVPFYLYTAPPK--RIIKDMSQDFYSAGFI--PGAIVYFS 174 (235)
Q Consensus 102 ~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~-~~~~F~L~~t~P~--k~l~d~~~tL~elgL~--Psall~~~ 174 (235)
.|+|.|+|| .++..+.+..|+++|++-| ...|.- ...-|.|+..-+. ...-|.++.+.+.+.. +...++|.
T Consensus 6 ~v~V~llDg-t~e~~vd~~tt~~ell~~V-~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 6 NVRVTTMDA-ELEFAIQQTTTGKQLFDQV-VKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp EEEEECSSC-EEEEEEETTCBHHHHHHHH-HHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEeCCC-eEEEEECCCCCHHHHHHHH-HHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence 399999999 4689999999999999999 666663 3456888764322 2223556777665432 23455555
No 110
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=76.47 E-value=13 Score=27.21 Aligned_cols=69 Identities=16% Similarity=0.188 Sum_probs=55.7
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEe
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSY 175 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~ 175 (235)
|-|..|+|........++.++.+|.+-. -..+.-....|.|.. -++.+ |.+..+.-.||..+|.|.+.-
T Consensus 12 v~Vl~~n~rr~~VKvtp~t~L~~VL~ea-C~K~gl~~~~~~Lkh--~~k~l-DLSlpfRlsgLpnnAkLELv~ 80 (90)
T 2al3_A 12 VSVLAPNGRRHTVKVTPSTVLLQVLEDT-CRRQDFNPSEYDLKF--QRTVL-DLSLQWRFANLPNNAKLEMVP 80 (90)
T ss_dssp EEEECTTSCEEEECCCTTSBHHHHHHHH-HHHTTCCGGGCEEEE--TTEEE-SSSCBHHHHCCCSSCEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCHHHHHHHH-HHHhCCChhhCeEEe--CCEec-cccceeEecCCCCCCEEEEEE
Confidence 6688999999999999999999987776 444443456788874 45676 778888999999999999874
No 111
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=75.71 E-value=21 Score=27.03 Aligned_cols=73 Identities=7% Similarity=0.006 Sum_probs=54.8
Q ss_pred CceeEEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEe
Q 040408 98 RKAVIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSY 175 (235)
Q Consensus 98 ~~~~~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~ 175 (235)
.+.. |+|+-.||..++.....+.++..|++.. .+-..-+...+.++.. .+.|. .+.|..++++--...|.+-.
T Consensus 39 ~~I~-LKV~~qdg~ev~fkIk~tt~L~KLm~aY-~er~Gl~~~~irFlFD--G~rI~-~~~TP~dL~MEDgD~IdV~~ 111 (115)
T 3kyd_D 39 EYIK-LKVIGQDSSEIHFKVKMTTHLKKLKESY-CQRQGVPMNSLRFLFE--GQRIA-DNHTPKELGMEEEDVIEVYQ 111 (115)
T ss_dssp CEEE-EEEECTTSCEEEEEEETTSCTHHHHHHH-HHHHTCCTTSEEEEET--TEECC-TTCCTTTTTCCTTCEEEEEE
T ss_pred CeEE-EEEEcCCCCEEEEEEccCChHHHHHHHH-HHHhCCChhhEEEEEC--CeECC-CCCCHHHcCCCCCCEEEEEe
Confidence 4556 9999999999999999999999999998 5555544556666543 34443 36788999998888777653
No 112
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=73.02 E-value=6.5 Score=34.90 Aligned_cols=70 Identities=11% Similarity=0.116 Sum_probs=49.5
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeC-CCceeecCCCcCccccCCCCceEEEEEe
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTA-PPKRIIKDMSQDFYSAGFIPGAIVYFSY 175 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t-~P~k~l~d~~~tL~elgL~Psall~~~~ 175 (235)
|.|++ .|......+.+++|+++|-+-| .+...-+...=.|... +..+.+.| +.+|.++|+.++..|++.=
T Consensus 8 i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I-~~~tgVpp~~QkLi~~k~~Gk~l~D-~~~L~~~~ik~g~~l~L~g 78 (320)
T 3shq_A 8 VIVKW-SGKEYPVDLTDQDTVEVLRHEI-FRKTQVRPERQKLLNLKYKGKTAAD-NVKISALELKPNFKLMMVG 78 (320)
T ss_dssp EEEEE-TTEEEEEEEETTSBHHHHHHHH-HHHHCCCGGGCEETTCBSSSSBCCT-TSBTTSSCCC--CEEEEEC
T ss_pred EEEEE-CCEEEEEEECCCCcHHHHHHHH-HHHHCcCHHHeEEeecccCCcccCc-cccHHHcCCCCCCEEEEEc
Confidence 88887 6777889999999999999999 5555433333345421 33456655 6789999999998888863
No 113
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=68.24 E-value=3.3 Score=36.33 Aligned_cols=48 Identities=19% Similarity=0.244 Sum_probs=36.4
Q ss_pred ceeEEEEECCCCceEEEEeCC--CCchHHHHHHHHHhhcCC-CCCCeEEEeCCCc
Q 040408 99 KAVIIRVRFPDNHTLEVNFHP--SETMQSLVDFLRMRVLSR-TDVPFYLYTAPPK 150 (235)
Q Consensus 99 ~~~~IRIRFPDg~~lq~~F~~--~etl~~l~~fV~~~~L~~-~~~~F~L~~t~P~ 150 (235)
... |+|.|+||+.....|.. +.|.++|.+-+ .|.. ...-|.|+..-|.
T Consensus 5 ~~~-i~V~l~dg~~~~~~i~~~~~tt~~el~e~l---gL~~~~~~~FaL~~~~~~ 55 (322)
T 4dxa_B 5 FEK-VRIYRMDGSYRSVELKHGNNTTVQQIMEGM---RLSQETQQYFTIWICSEN 55 (322)
T ss_dssp CCE-EEEECTTSCEEEEECTTGGGCCHHHHHTTS---SCCTTGGGGEEEEEECSS
T ss_pred ceE-EEEEEECCcEEEEEEcCCCCCcHHHHHHHh---CcCccccCeeEEEEECCc
Confidence 345 99999999999999999 99999996544 1322 2346999886554
No 114
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=67.55 E-value=11 Score=36.78 Aligned_cols=47 Identities=26% Similarity=0.298 Sum_probs=39.4
Q ss_pred ceeEEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCC-CCCCeEEEeC
Q 040408 99 KAVIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSR-TDVPFYLYTA 147 (235)
Q Consensus 99 ~~~~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~-~~~~F~L~~t 147 (235)
... ++|.|+||+.....+.+..|+++|.+.| ...+.- ...-|.|+..
T Consensus 263 ~i~-~~V~llDgt~~~~~vds~Tt~~ell~~V-~~~LgL~e~~~FgL~~~ 310 (655)
T 3pvl_A 263 PIM-LPVTFMDGTTKTLLTDSATTARELCNAL-ADKISLKDRFGFSLYIA 310 (655)
T ss_dssp CEE-EEEEETTSCEEEEEECTTCBHHHHHHHH-HHHTTCSSCTTEEEEEE
T ss_pred ceE-EEEEecCCceEEEEEccCCcHHHHHHHH-HHHcCCcccccceeEEe
Confidence 345 8999999999999999999999999999 666652 3567999875
No 115
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=66.70 E-value=12 Score=27.75 Aligned_cols=58 Identities=22% Similarity=0.294 Sum_probs=44.9
Q ss_pred CceeEEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCc----eeecCC
Q 040408 98 RKAVIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPK----RIIKDM 156 (235)
Q Consensus 98 ~~~~~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~----k~l~d~ 156 (235)
.+-+ |||-+.||+........+.|.++|.+.+...+-......|.|+-..|. +.|+|.
T Consensus 8 ~k~v-vkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDH 69 (100)
T 1wgr_A 8 RPHV-VKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDH 69 (100)
T ss_dssp SCEE-EEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSS
T ss_pred CCEE-EEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCc
Confidence 3445 999999999999999999999999999844443344678999977663 555554
No 116
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=65.99 E-value=11 Score=35.36 Aligned_cols=47 Identities=17% Similarity=0.185 Sum_probs=39.2
Q ss_pred eeEEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCC--CCCeEEEeCC
Q 040408 100 AVIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRT--DVPFYLYTAP 148 (235)
Q Consensus 100 ~~~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~--~~~F~L~~t~ 148 (235)
.. ++|.|+||+.....+.+..|+++|++.| ...+.-. ..-|.|+...
T Consensus 217 ~~-~~V~l~dg~~~~~~v~~~tt~~el~~~v-~~~lgL~e~~~~FgL~~~~ 265 (555)
T 3au4_A 217 MT-STVYCHGGGSCKITINSHTTAGEVVEKL-IRGLAMEDSRNMFALFEYN 265 (555)
T ss_dssp EE-EEEEETTSCEEEEEECTTCBHHHHHHHH-HHHTTCTTCCSEEEEEEES
T ss_pred cc-eEEEecCCCeEEEEeCCCCcHHHHHHHH-HHHcCCCCCCCceEEEEEe
Confidence 45 9999999999999999999999999999 6666642 4568898643
No 117
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=63.48 E-value=19 Score=30.16 Aligned_cols=53 Identities=23% Similarity=0.358 Sum_probs=39.0
Q ss_pred CCCceeEEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCC
Q 040408 96 KFRKAVIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPP 149 (235)
Q Consensus 96 ~~~~~~~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P 149 (235)
...+-. |+|-++||........++.|..+|.+.+....-......+.|+-..|
T Consensus 31 ~~~k~~-v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~~~~l~E~~~ 83 (291)
T 3tca_A 31 KVKKLV-VKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNVDWCLYEIYP 83 (291)
T ss_dssp -CCEEE-EEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCTTEEEEEEET
T ss_pred hccceE-EEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCCCeEEEEecc
Confidence 344555 99999999999999999999999999874433333455688876543
No 118
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=62.31 E-value=23 Score=30.87 Aligned_cols=70 Identities=23% Similarity=0.312 Sum_probs=49.7
Q ss_pred ccCHHHHHHHHHhccCCcCCCceeEEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCc
Q 040408 78 LKTRRIREAEEAAGTGRSKFRKAVIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPK 150 (235)
Q Consensus 78 L~TkamRE~e~~~~~~~~~~~~~~~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~ 150 (235)
+.-.++|.+-+.-+ -+...+-. |||-+.||+.......++.|.++|.+.+....-......|.|+-..|.
T Consensus 12 ~k~~ki~~al~k~~--~a~~~k~i-vkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~ 81 (281)
T 4gmv_A 12 LKAEKIRVALEKIK--EAQVKKLV-IRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSE 81 (281)
T ss_dssp -CCTHHHHHHHHHH--TTSSCEEE-EEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGG
T ss_pred HHHHHHHHHHHHHH--hcCcccEE-EEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCC
Confidence 44556666544444 45666666 999999999999999999999999987733232233567888877664
No 119
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=58.81 E-value=65 Score=26.63 Aligned_cols=75 Identities=7% Similarity=0.041 Sum_probs=55.4
Q ss_pred CceeEEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEeCc
Q 040408 98 RKAVIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYDD 177 (235)
Q Consensus 98 ~~~~~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~~~ 177 (235)
.+.. |+|+. ||..++.....++++..|.+.. .+-..-+...+.+... .+.|. .+.|..++|+--...|.+-...
T Consensus 28 ~~I~-LkV~~-~g~~v~fkIk~~t~l~kL~~ay-~er~Gi~~~~~RF~Fd--G~rI~-~~~TP~dL~MEdgD~Idv~~~q 101 (200)
T 3pge_A 28 THIN-LKVSD-GSSEIFFKIKKTTPLRRLMEAF-AKRQGKEMDSLRFLYD--GIRIQ-ADQTPEDLDMEDNDIIEAHREQ 101 (200)
T ss_dssp CCEE-EEEEC-SSCEEEEEECTTSCTHHHHHHH-HHHHSSCGGGEEEEET--TEECC-TTCCTTTTTCCTTEEEEEEECC
T ss_pred CeEE-EEEec-CCCEEEEEEecCCHHHHHHHHH-HHHhCCChhhEEEEEC--CEEcC-CCCCHHHcCCCCCCEEEEEecc
Confidence 4456 99986 9999999999999999999988 5554444455666543 34443 3678889999888888877655
Q ss_pred h
Q 040408 178 A 178 (235)
Q Consensus 178 ~ 178 (235)
-
T Consensus 102 ~ 102 (200)
T 3pge_A 102 I 102 (200)
T ss_dssp S
T ss_pred C
Confidence 3
No 120
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.39 E-value=38 Score=24.61 Aligned_cols=69 Identities=13% Similarity=0.259 Sum_probs=48.5
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCC-CceeecCCCcCccccCCCCceEEEEEeCc
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAP-PKRIIKDMSQDFYSAGFIPGAIVYFSYDD 177 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~-P~k~l~d~~~tL~elgL~Psall~~~~~~ 177 (235)
+.|.++-...--..-++.-++++++-.|=+.+=-+ ...|.|.-.. ....| |.+++|.|+|+.- .+.|+.
T Consensus 13 LvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefd-p~~~~Ll~d~~~~e~L-dLskSLndlgirE----Lya~d~ 82 (91)
T 2daj_A 13 VVINFKKTQKTIVRVSPHASLQELAPIICSKCEFD-PLHTLLLKDYQSQEPL-DLTKSLNDLGLRE----LYAMDV 82 (91)
T ss_dssp EEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCC-TTSEEEESCSSCCCBC-CTTSCHHHHTCSE----EEEEEC
T ss_pred EEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCC-hhhEEEecCCCCCccc-chhcchhhhhhhh----hheecc
Confidence 67788877777778889999999999994444333 4567776543 23333 7889999999853 345554
No 121
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=55.10 E-value=2.5 Score=35.04 Aligned_cols=64 Identities=11% Similarity=0.066 Sum_probs=0.0
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEe
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSY 175 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~ 175 (235)
|-|+..+|..+.....+++||.+|-..| .....-+.....|+. -.+.|.| +.+|. ..++|++..
T Consensus 3 I~VKtL~GktitLeV~~sdTV~~LK~kI-~~keGIP~~qQRLIf--~GK~LeD-~~TLs-----~~STLhLvl 66 (189)
T 2xzm_9 3 VQVKTLEGETKIYTLEQGTSVLDLKSQI-SQDMGFEIDMMTLVN--NGFIAPN-TELVT-----DDVTYYLSL 66 (189)
T ss_dssp -------------------------------------------------------------------------
T ss_pred EEEEcCCCCEEEEEECCcChHHHHHHHH-HHHhCcChhHEEEEe--cCeECCC-CCccc-----CCCEEEEEE
Confidence 6788889998889999999999999999 554433334455653 3467755 56666 556666654
No 122
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=54.65 E-value=21 Score=26.38 Aligned_cols=36 Identities=22% Similarity=0.577 Sum_probs=31.1
Q ss_pred EEEEECCCCceEEEEeC--CCCchHHHHHHHHHhhcCCC
Q 040408 102 IIRVRFPDNHTLEVNFH--PSETMQSLVDFLRMRVLSRT 138 (235)
Q Consensus 102 ~IRIRFPDg~~lq~~F~--~~etl~~l~~fV~~~~L~~~ 138 (235)
+|||+-|||--+.+.-. +.=++.+|.+.| ..++.+.
T Consensus 16 VIRIk~p~~g~vDwaV~~~~~L~FrDvL~~I-~~vmP~a 53 (106)
T 2npt_A 16 VIRIKIPNSGAVDWTVHSGPQLLFRDVLDVI-GQVLPEA 53 (106)
T ss_dssp EEEEEETTTEEEEEEECC--CCCHHHHHHHH-HHHSTTS
T ss_pred EEEEECCCCCccccccCCcccccHHHHHHHH-HHhCccc
Confidence 39999999999999998 577899999999 7888764
No 123
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=54.07 E-value=37 Score=26.28 Aligned_cols=55 Identities=15% Similarity=0.242 Sum_probs=39.0
Q ss_pred CchHHHHHHHHHhhcCCCCCCeEEEe-CCCceeec-C----CCcCccccCCCCceEEEEEeCc
Q 040408 121 ETMQSLVDFLRMRVLSRTDVPFYLYT-APPKRIIK-D----MSQDFYSAGFIPGAIVYFSYDD 177 (235)
Q Consensus 121 etl~~l~~fV~~~~L~~~~~~F~L~~-t~P~k~l~-d----~~~tL~elgL~Psall~~~~~~ 177 (235)
-|+++|.+.| +.-+.-+ ..|.+.- +--+-++. | ..++|.++|+.....|.+.=++
T Consensus 20 ~TL~dLV~~l-~~~~gy~-~eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~DEd 80 (127)
T 3onh_A 20 MKLSDFVVLI-REKYSYP-QDISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSDEE 80 (127)
T ss_dssp CBHHHHHHHH-HHHHTCC-SSEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEESC
T ss_pred cCHHHHHHHH-HHhcCCC-CcEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEccc
Confidence 3999999999 5555543 3899883 43333332 1 3679999999999999998543
No 124
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=51.78 E-value=8.1 Score=28.58 Aligned_cols=61 Identities=20% Similarity=0.408 Sum_probs=41.2
Q ss_pred EEEEeCCCCchHHHHHHHHHhh----cCCCCC-------CeEEEeCCCceee----cCCCcCccccCCCCceEEEEE
Q 040408 113 LEVNFHPSETMQSLVDFLRMRV----LSRTDV-------PFYLYTAPPKRII----KDMSQDFYSAGFIPGAIVYFS 174 (235)
Q Consensus 113 lq~~F~~~etl~~l~~fV~~~~----L~~~~~-------~F~L~~t~P~k~l----~d~~~tL~elgL~Psall~~~ 174 (235)
+...|.++.|++++.+.+ .+. +..+.. .=.||...|...= ++.+++|.|+|+..+..|++.
T Consensus 7 ~~l~v~~~~TL~~lid~L-~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 7 QNIQFSPSAKLQEVLDYL-TNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCEECCTTCBHHHHHHHH-HHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred EEEEECCchhHHHHHHHH-HhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 456889999999999999 452 222322 3456765543221 135678999999999888884
No 125
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=51.66 E-value=66 Score=26.86 Aligned_cols=75 Identities=7% Similarity=0.038 Sum_probs=54.8
Q ss_pred CceeEEEEECCCCceEEEEeCCCCchHHHHHHHHHhhcCCCCCCeEEEeCCCceeecCCCcCccccCCCCceEEEEEeCc
Q 040408 98 RKAVIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMRVLSRTDVPFYLYTAPPKRIIKDMSQDFYSAGFIPGAIVYFSYDD 177 (235)
Q Consensus 98 ~~~~~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~~L~~~~~~F~L~~t~P~k~l~d~~~tL~elgL~Psall~~~~~~ 177 (235)
.+.. |+|+. ||..++.....++++..|++.. .+-..-+...+.+.. -.+.|. .+.|..+++|--..+|.+-...
T Consensus 56 e~In-LKVk~-dG~eV~FKIKrtTpL~KLmeAY-cERqGL~~~sIRFLF--DGqRI~-~ddTPeDLdMEDGDtIDV~leQ 129 (207)
T 3tix_A 56 THIN-LKVSD-GSSEIFFKIKKTTPLRRLMEAF-AKRQGKEMDSLTFLY--DGIEIQ-ADQTPEDLDMEDNDIIEAHREQ 129 (207)
T ss_dssp CEEE-EEEEC-SSCEEEEEEETTSCTHHHHHHH-HHHTTCCGGGSCEEE--TTEECC-SSCCTTTTTCCTTEEEEECCCC
T ss_pred CcEE-EEEec-CCCEEEEEEccCChHHHHHHHH-HHHhCCCcccEEEEE--CCeecC-CCCCHHHcCCCCCCEEEEEEec
Confidence 3455 99985 9999999999999999999998 454443334455443 234443 3679999999999999887655
Q ss_pred h
Q 040408 178 A 178 (235)
Q Consensus 178 ~ 178 (235)
-
T Consensus 130 ~ 130 (207)
T 3tix_A 130 I 130 (207)
T ss_dssp C
T ss_pred c
Confidence 4
No 126
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=50.49 E-value=17 Score=32.46 Aligned_cols=44 Identities=2% Similarity=-0.018 Sum_probs=36.6
Q ss_pred EEEECCCCc----eEEEEeCCCCchHHHHHHHHHhhcCC-CCCCeEEEeC
Q 040408 103 IRVRFPDNH----TLEVNFHPSETMQSLVDFLRMRVLSR-TDVPFYLYTA 147 (235)
Q Consensus 103 IRIRFPDg~----~lq~~F~~~etl~~l~~fV~~~~L~~-~~~~F~L~~t 147 (235)
++|.||||. .....|.++.|+++|.+-| ...|.- ...-|.|+..
T Consensus 10 l~V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v-~~~lgL~~~~~FgL~~~ 58 (375)
T 2al6_A 10 FHYFENSSEPTTWASIIRHGDATDVRGIIQKI-VDCHKVKNVACYGLRLS 58 (375)
T ss_dssp ECCCCCSSCGGGCEEEEEECTTCBHHHHHHHH-HHHTTCSCGGGEEEEEE
T ss_pred EEEEecCCCCCCceEEEEeCCCCCHHHHHHHH-HHHcCCCeEeEEEEEEE
Confidence 899999998 9999999999999999999 555553 3456888864
No 127
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=33.38 E-value=59 Score=21.29 Aligned_cols=26 Identities=15% Similarity=0.112 Sum_probs=21.0
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHH
Q 040408 103 IRVRFPDNHTLEVNFHPSETMQSLVDFL 130 (235)
Q Consensus 103 IRIRFPDg~~lq~~F~~~etl~~l~~fV 130 (235)
|.|.+|||.. ..|....|+.++..-+
T Consensus 3 i~i~~p~g~~--~~~~~g~T~~dla~~i 28 (73)
T 2kmm_A 3 VMVFTPKGEI--KRLPQGATALDFAYSL 28 (73)
T ss_dssp EEEECTTCCE--EEECTTCBHHHHHHHH
T ss_pred EEEEcCCCCE--EEcCCCCcHHHHHHHH
Confidence 7899999986 5677788888887666
No 128
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=32.68 E-value=1.2e+02 Score=22.38 Aligned_cols=53 Identities=15% Similarity=0.283 Sum_probs=31.8
Q ss_pred CcCCCceeEEEEECCCCc---eEE---EEeCCCCchHHHHHHHHHhhcC-CCCCCeEEEeC
Q 040408 94 RSKFRKAVIIRVRFPDNH---TLE---VNFHPSETMQSLVDFLRMRVLS-RTDVPFYLYTA 147 (235)
Q Consensus 94 ~~~~~~~~~IRIRFPDg~---~lq---~~F~~~etl~~l~~fV~~~~L~-~~~~~F~L~~t 147 (235)
+.+|+.-+.|.|.--.+. .|+ .....+.|++++..+|| ..|. ++...+.|+..
T Consensus 21 r~k~p~~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iR-k~l~l~~~~alfl~vn 80 (110)
T 2r2q_A 21 RKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIR-KRIHLRPEDALFFFVN 80 (110)
T ss_dssp HHHCTTEEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHH-HHTTCCTTSCCEEEBT
T ss_pred HHhCCCceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHH-HHhcCCCCCcEEEEEC
Confidence 445555444666533332 222 24556889999999994 5554 44566777764
No 129
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=32.48 E-value=1.5e+02 Score=22.01 Aligned_cols=78 Identities=14% Similarity=0.285 Sum_probs=42.3
Q ss_pred CcCCCceeEEEEECCCCc---eEEE---EeCCCCchHHHHHHHHHhhcC-CCCCCeEEEeCCCceeecCCCcC---cccc
Q 040408 94 RSKFRKAVIIRVRFPDNH---TLEV---NFHPSETMQSLVDFLRMRVLS-RTDVPFYLYTAPPKRIIKDMSQD---FYSA 163 (235)
Q Consensus 94 ~~~~~~~~~IRIRFPDg~---~lq~---~F~~~etl~~l~~fV~~~~L~-~~~~~F~L~~t~P~k~l~d~~~t---L~el 163 (235)
+.+|+.-+.|.|.-..++ .|+- .-..+.|++++..+|| ..|. ++...+.|+..- .++..+.+ |+++
T Consensus 22 r~kyP~~IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iR-k~l~l~~~~alfl~vn~---~~p~~~~~m~~LY~~ 97 (117)
T 1eo6_A 22 RAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIR-KRIQLPSEKAIFLFVDK---TVPQSSLTMGQLYEK 97 (117)
T ss_dssp HHHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHH-HHHTCCTTSCCEEEBTT---BCCCTTSBHHHHHHH
T ss_pred HHHCCCeEEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhH-HhhcCCCCCcEEEEECC---EecCccchHHHHHHH
Confidence 456655545777633332 2222 3446889999999995 5544 445667777642 23323333 3332
Q ss_pred CCCCceEEEEEe
Q 040408 164 GFIPGAIVYFSY 175 (235)
Q Consensus 164 gL~Psall~~~~ 175 (235)
---...-||+.+
T Consensus 98 ~kd~DGfLyi~Y 109 (117)
T 1eo6_A 98 EKDEDGFLYVAY 109 (117)
T ss_dssp HCCTTSCEEEEE
T ss_pred hCCCCCEEEEEE
Confidence 222345566665
No 130
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=29.96 E-value=1.9e+02 Score=22.16 Aligned_cols=80 Identities=16% Similarity=0.349 Sum_probs=43.3
Q ss_pred CcCCCceeEEEE-ECCCCc------eEEEEeCCCCchHHHHHHHHHhhcC-CCCCCeEE-EeCCCceeecCCCcC---cc
Q 040408 94 RSKFRKAVIIRV-RFPDNH------TLEVNFHPSETMQSLVDFLRMRVLS-RTDVPFYL-YTAPPKRIIKDMSQD---FY 161 (235)
Q Consensus 94 ~~~~~~~~~IRI-RFPDg~------~lq~~F~~~etl~~l~~fV~~~~L~-~~~~~F~L-~~t~P~k~l~d~~~t---L~ 161 (235)
+.+|+.-+.|-| |.+... .-......+.|++.+..+|| ..|. ++...+.| +.. ..++..+.+ |+
T Consensus 29 r~kyP~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iR-krL~l~~~~alFl~~vn---~~~p~~~~~m~~lY 104 (130)
T 2zjd_A 29 REQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIR-RRLQLNANQAFFLLVNG---HSMVSVSTPISEVY 104 (130)
T ss_dssp HHHCTTEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHH-HHHTCCTTCCEEEEETT---TEECCTTSBHHHHH
T ss_pred HHhCCCceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHH-HHhCCCCCceEEEEEEC---CccCCccchHHHHH
Confidence 556766544666 444322 12233457889999999995 5554 45666666 653 234333333 33
Q ss_pred ccCCCCceEEEEEeCc
Q 040408 162 SAGFIPGAIVYFSYDD 177 (235)
Q Consensus 162 elgL~Psall~~~~~~ 177 (235)
++-=-...-|++.+..
T Consensus 105 ~~~kdeDGfLyv~Ys~ 120 (130)
T 2zjd_A 105 ESEKDEDGFLYMVYAS 120 (130)
T ss_dssp HHHCCTTSCEEEEEEE
T ss_pred HHhCCCCCEEEEEEeC
Confidence 2221234556666644
No 131
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=28.73 E-value=83 Score=21.60 Aligned_cols=31 Identities=16% Similarity=0.210 Sum_probs=19.9
Q ss_pred CCceeEEEEECCCCceEEEEeCC-CCchHHHHHHH
Q 040408 97 FRKAVIIRVRFPDNHTLEVNFHP-SETMQSLVDFL 130 (235)
Q Consensus 97 ~~~~~~IRIRFPDg~~lq~~F~~-~etl~~l~~fV 130 (235)
.+... |+|.||||.+.+.. . ..|+.++..-+
T Consensus 7 ~~~~~-i~I~lpdG~~~~~~--~~~~T~~dia~~i 38 (88)
T 1wwt_A 7 GDSKP-IKVTLPDGKQVDAE--SWKTTPYQIACGI 38 (88)
T ss_dssp CSCCE-EEEECTTSCEEEEE--TTTCCHHHHHHHS
T ss_pred CCCCC-EEEEECCCCEEEcc--cCCCCHHHHHHHh
Confidence 33455 99999999975544 3 35666554444
No 132
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=28.15 E-value=1.9e+02 Score=21.56 Aligned_cols=72 Identities=8% Similarity=0.188 Sum_probs=49.1
Q ss_pred ceeEEEEECCCCceEEEEeCCCCchHHHHHHHHHh--------hcCCCCCCeEEE--eC-CCceeecCCCcCccccCCCC
Q 040408 99 KAVIIRVRFPDNHTLEVNFHPSETMQSLVDFLRMR--------VLSRTDVPFYLY--TA-PPKRIIKDMSQDFYSAGFIP 167 (235)
Q Consensus 99 ~~~~IRIRFPDg~~lq~~F~~~etl~~l~~fV~~~--------~L~~~~~~F~L~--~t-~P~k~l~d~~~tL~elgL~P 167 (235)
.+. |-+-+|+|..|+...+.+.|+.++-+-|=++ .|.+ ...|..+ .. .-...+.|+++.|-|..+.
T Consensus 19 ~v~-v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d-~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf- 95 (108)
T 2v1y_A 19 RIL-VECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQD-ESSYIFVSVTQEAEREEFFDETRRLCDLRLF- 95 (108)
T ss_dssp EEE-EEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCC-GGGCEEEEEBTTSCEEEECCTTSBGGGSCBS-
T ss_pred cEE-EEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCC-ccceEEEEecCCceEEEeEcCceEEEecccc-
Confidence 344 8899999999999999999999997755344 3333 2233333 23 3445566888999998877
Q ss_pred ceEEEE
Q 040408 168 GAIVYF 173 (235)
Q Consensus 168 sall~~ 173 (235)
..+|.+
T Consensus 96 ~piLkl 101 (108)
T 2v1y_A 96 QPFLKV 101 (108)
T ss_dssp SSEEEE
T ss_pred ceEEEE
Confidence 334433
No 133
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=27.44 E-value=72 Score=22.40 Aligned_cols=24 Identities=4% Similarity=0.025 Sum_probs=21.0
Q ss_pred CCCCCCcccccCCHHHHHHHHHhh
Q 040408 46 NDDDDDDEFYEFTAEDYYRILAAN 69 (235)
Q Consensus 46 ~~~elpD~FfelT~~e~k~~~~~~ 69 (235)
....+|.++-.||+.|+|.+++.+
T Consensus 18 ~~g~l~~~l~klkVaeLK~eLk~R 41 (75)
T 2kvu_A 18 KPGALPANLDDMKVAELKQELKLR 41 (75)
T ss_dssp SCSSCCTTTTTSCHHHHHHHHHHT
T ss_pred CCccchHHHHHCcHHHHHHHHHHc
Confidence 347789999999999999999876
No 134
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=21.84 E-value=2.7e+02 Score=21.16 Aligned_cols=31 Identities=10% Similarity=0.275 Sum_probs=23.0
Q ss_pred EeCCCCchHHHHHHHHHhhcC-CCCCCeEEEeC
Q 040408 116 NFHPSETMQSLVDFLRMRVLS-RTDVPFYLYTA 147 (235)
Q Consensus 116 ~F~~~etl~~l~~fV~~~~L~-~~~~~F~L~~t 147 (235)
-.+.+.|++.++.+|| ..|. .+...+.|+..
T Consensus 58 lVp~~~tv~qf~~~IR-krl~L~~~~alFl~Vn 89 (125)
T 3m95_A 58 LVPSDLTVGQFYFLIR-KRIHLRPEDALFFFVN 89 (125)
T ss_dssp EEETTSBHHHHHHHHH-HHTTCCTTSCCEEEBT
T ss_pred EcCCCCEeeeehhhhH-hhcCCCccccEEEEEC
Confidence 3457899999999995 5554 45667778765
Done!