BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040409
         (417 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1T6M|A Chain A, X-Ray Structure Of The R70d Pi-Plc Enzyme: Insight Into
           The Role Of Calcium And Surrounding Amino Acids On
           Active Site Geometry And Catalysis.
 pdb|1T6M|B Chain B, X-Ray Structure Of The R70d Pi-Plc Enzyme: Insight Into
           The Role Of Calcium And Surrounding Amino Acids On
           Active Site Geometry And Catalysis
          Length = 299

 Score = 31.6 bits (70), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 14/128 (10%)

Query: 75  LPFSKYSWLTTHNSYSLLGARPAIGPI-LVSPRNQEDTVTNQLNNGVRGFMLD--MYDFN 131
           +P ++ S   TH+S    G      PI  V    QE     Q+++G R F +D  + D +
Sbjct: 22  IPLARISIPGTHDS----GTFKLQNPIKQVWGMTQEYDFRYQMDHGARIFDIDGRLTD-D 76

Query: 132 NDIWLCHSTGGRCFNFTAFQPAINVLREIQTFLQANPSEIVTIFIEDYVTSSQGLTKVFK 191
           N I L H   G  + +      IN   E + FL+ NPSE + + ++      +G    F 
Sbjct: 77  NTIVLHH---GPLYLYVTLHEFIN---EAKQFLKDNPSETIIMSLKKEYEDMKGAEGSFS 130

Query: 192 ASGLSNYM 199
           ++   NY 
Sbjct: 131 STFEKNYF 138


>pdb|1AE7|A Chain A, Notexin, A Presynaptic Neurotoxic Phospholipase A2
 pdb|4E4C|A Chain A, Crystal Structure Of Notexin At 1.8 A Resolution
          Length = 119

 Score = 31.2 bits (69), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 303 KMMNTCYDAAGKR--WPNFIAVDFYQRSDGGGTPEAIDEANGRLTCGC-VNIAYCKANAT 359
           K+ + CYD AGK+  +P   A D+Y   + G     I +   R  C C V  A+C A A 
Sbjct: 46  KIHDDCYDEAGKKGCFPKMSAYDYYC-GENGPYCRNIKKKCLRFVCDCDVEAAFCFAKAP 104

Query: 360 FGTCD 364
           +   +
Sbjct: 105 YNNAN 109


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.132    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,369,797
Number of Sequences: 62578
Number of extensions: 501203
Number of successful extensions: 966
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 966
Number of HSP's gapped (non-prelim): 8
length of query: 417
length of database: 14,973,337
effective HSP length: 101
effective length of query: 316
effective length of database: 8,652,959
effective search space: 2734335044
effective search space used: 2734335044
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)