BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040409
         (417 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q93XX5|Y5713_ARATH PI-PLC X domain-containing protein At5g67130 OS=Arabidopsis
           thaliana GN=At5g67130 PE=1 SV=1
          Length = 426

 Score =  408 bits (1049), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 191/343 (55%), Positives = 249/343 (72%), Gaps = 3/343 (0%)

Query: 22  ACSS-SLKIGETCSGSSNSACDAGLTCQTCPVSGNTRPRCARIQPLNPTSKVKGLPFSKY 80
           ACS+ + ++ ++CS +++  C +GL C  CP  G ++P C R Q  +PTS + GLPF+KY
Sbjct: 28  ACSNGNCQLLDSCSSATD--CVSGLYCGDCPAVGRSKPVCTRGQATSPTSIINGLPFNKY 85

Query: 81  SWLTTHNSYSLLGARPAIGPILVSPRNQEDTVTNQLNNGVRGFMLDMYDFNNDIWLCHST 140
           +WL THN++S   A    G   ++  NQEDT+TNQL NGVRG MLDMYDFNNDIWLCHS 
Sbjct: 86  TWLMTHNAFSNANAPLLPGVERITFYNQEDTITNQLQNGVRGLMLDMYDFNNDIWLCHSL 145

Query: 141 GGRCFNFTAFQPAINVLREIQTFLQANPSEIVTIFIEDYVTSSQGLTKVFKASGLSNYMF 200
            G+CFNFTAFQPAIN+LRE++ FL  NP+EIVTI IEDYV   +GL+ +F  +GL  Y F
Sbjct: 146 RGQCFNFTAFQPAINILREVEAFLSQNPTEIVTIIIEDYVHRPKGLSTLFANAGLDKYWF 205

Query: 201 PVSKMPKNGGDWPIVDDMVKQNQRLVVFTSKSSKEASEGIAYQWRYVVENQYGNEGMNDG 260
           PVSKMP+ G DWP V DMV++N RL+VFTS ++KE  EG+AYQWRY+VEN+ G+ G+  G
Sbjct: 206 PVSKMPRKGEDWPTVTDMVQENHRLLVFTSVAAKEDEEGVAYQWRYMVENESGDPGVKRG 265

Query: 261 SCQNRAESSPLNTKTRSLVLQNYFPTNPNATEACLDNSAPLTKMMNTCYDAAGKRWPNFI 320
           SC NR ES PLN+K+ SL L NYFPT P   +AC ++SAPL +M+ TC  + G R PNF+
Sbjct: 266 SCPNRKESQPLNSKSSSLFLMNYFPTYPVEKDACKEHSAPLAEMVGTCLKSGGNRMPNFL 325

Query: 321 AVDFYQRSDGGGTPEAIDEANGRLTCGCVNIAYCKANATFGTC 363
           AV+FY RSDGGG  E +D  NG + CGC  ++ C+  A +G+C
Sbjct: 326 AVNFYMRSDGGGVFEILDRMNGPVLCGCETLSACQPGAAYGSC 368


>sp|Q10683|Y2075_MYCTU Uncharacterized protein Rv2075c/MT2135 OS=Mycobacterium
           tuberculosis GN=Rv2075c PE=4 SV=1
          Length = 487

 Score = 40.4 bits (93), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 22/169 (13%)

Query: 75  LPFSKYSWLTTHNSYSLLGARPAIGPILVSPRNQEDTVTNQLNNGVRGFMLDMYDFNN-- 132
           +P  +  WL THNS++ L     +     +  NQ+ ++  QL+  VR   LD++      
Sbjct: 112 VPLRETQWLGTHNSFNSLSDSFTVS---HADSNQQLSLAQQLDIDVRALELDLHYLPRLE 168

Query: 133 -----DIWLCHSTGGRCFNF-TAFQPAI-NVLREIQTFLQA--NPSEIVTIFIEDYVTSS 183
                 + +CH  G +  N     +P +  VL +I  +L A  +  E++ +++ED + ++
Sbjct: 169 GHGAPGVTVCHGLGPKNANLGCTVEPLLATVLPQIANWLNAPGHTEEVILLYLEDQLKNA 228

Query: 184 QGLTKVF--------KASGLSNYMFPVSKMPKNGGDWPIVDDMVKQNQR 224
                V         +A G S    P        G  P+  D+ ++  R
Sbjct: 229 SAYESVVATLDQVLRRADGTSLIYRPNPARRATNGCVPLPLDVSREEIR 277


>sp|Q7VRP4|RL1_BLOFL 50S ribosomal protein L1 OS=Blochmannia floridanus GN=rplA PE=3
           SV=1
          Length = 235

 Score = 39.3 bits (90), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 7/113 (6%)

Query: 87  NSYSLLGARPAIGPILVSPRNQEDTVTNQLNNGVRGFMLDMYDFNNDI-WLCHSTGGRC- 144
           N  S LG  P +GP  + P  +  TVT  L + +R F L    + ND   + H+  G+  
Sbjct: 123 NIVSQLG--PILGPKGLMPNPKMSTVTQNLTDTIRNFKLGQVRYKNDKNGIIHAVIGKIN 180

Query: 145 FNFTAFQPAINVLREIQTFLQANPSEIVTIFIED-YVTSSQGLTKVFKASGLS 196
           FN +  Q  +  L  + +  Q  P++   I+I+  Y++++ G + +   S L+
Sbjct: 181 FNISCLQENLEAL--VFSIYQVKPTQFKGIYIKKIYISTTMGRSILIDKSSLN 231


>sp|A2QUS7|RPC3_ASPNC DNA-directed RNA polymerase III subunit rpc3 OS=Aspergillus niger
           (strain CBS 513.88 / FGSC A1513) GN=rpc82 PE=3 SV=1
          Length = 627

 Score = 38.5 bits (88), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 6/101 (5%)

Query: 307 TCYDAAGKRW-PNFIAVDFYQRSDGGGTPEAIDEANGRLTCGCVNIAYCKANATFGTCD- 364
           T YD     + PN  A  +  RS  G   E I+E  G+     +       +A  G  + 
Sbjct: 68  TSYDDGVTYYEPNLQAAYYLVRS--GKILEFIEERLGKYAATLMETIMFLGHAQVGYLET 125

Query: 365 VPPIAPPPPAAAGTTEDSP--QNPSQDNTNSAHRNDRPLLL 403
           +P + P PP A G  +++   ++  Q N +  H +D+P LL
Sbjct: 126 LPELQPAPPKANGVKQEAEGGESEEQMNGDDVHTSDQPALL 166


>sp|A6LE84|RL1_PARD8 50S ribosomal protein L1 OS=Parabacteroides distasonis (strain ATCC
           8503 / DSM 20701 / NCTC 11152) GN=rplA PE=3 SV=1
          Length = 232

 Score = 34.7 bits (78), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 6/99 (6%)

Query: 90  SLLGARPAIGPIL----VSPRNQEDTVTNQLNNGVRGFMLDMYDFNNDI-WLCHSTGGRC 144
           S++G   A+G +L    + P  +  TVTN++ N V+       DF  D   + H++ G+ 
Sbjct: 119 SIMGKIGALGRVLGPRGLMPNPKSGTVTNEIGNAVKEVKQGKIDFKVDKSGIVHTSVGKV 178

Query: 145 FNFTAFQPAINVLREIQTFLQANPSEIVTIFIEDYVTSS 183
            +FT  Q   N    I T ++  P+     +I+    SS
Sbjct: 179 -SFTPEQIRDNAKEFISTLIKLKPTAAKGAYIKSIYLSS 216


>sp|Q8D236|RL1_WIGBR 50S ribosomal protein L1 OS=Wigglesworthia glossinidia brevipalpis
           GN=rplA PE=3 SV=1
          Length = 242

 Score = 34.3 bits (77), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 2/87 (2%)

Query: 98  IGPILVSPRNQEDTVTNQLNNGVRGFMLDMYDFNNDIW-LCHSTGGRCFNFTAFQPAINV 156
           +GP  + P  +  T+T  + N ++       ++ ND + + H+T G+  NF   +  IN+
Sbjct: 132 LGPKGLMPNPKLGTITKDIKNEIKKIKSGQLNYKNDKYGIIHTTIGKI-NFNNLELKINL 190

Query: 157 LREIQTFLQANPSEIVTIFIEDYVTSS 183
           L  +   ++  P+ +  +FI+    S+
Sbjct: 191 LYFLNHLVKTKPTNLKGVFIKKVSLST 217


>sp|B2GI87|CARB_KOCRD Carbamoyl-phosphate synthase large chain OS=Kocuria rhizophila
            (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201)
            GN=carB PE=3 SV=1
          Length = 1106

 Score = 34.3 bits (77), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 180  VTSSQGLTKVFKASGLSNYMFPVSKMPKNGGDWPIVDDMVKQNQRLVVFTSKSSKEASEG 239
            + S+ G  +V + +G+ + +  V+K+    G+ P V D++   +  ++F + S  +A+ G
Sbjct: 988  IVSTGGTAEVLRRNGIESTV--VAKIADAEGEEPTVADLITDGRIDLIFNTPSGGQAARG 1045

Query: 240  IAYQWR 245
              YQ R
Sbjct: 1046 DGYQIR 1051


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.133    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 161,039,572
Number of Sequences: 539616
Number of extensions: 6898542
Number of successful extensions: 20664
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 20662
Number of HSP's gapped (non-prelim): 14
length of query: 417
length of database: 191,569,459
effective HSP length: 120
effective length of query: 297
effective length of database: 126,815,539
effective search space: 37664215083
effective search space used: 37664215083
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)