Query 040409
Match_columns 417
No_of_seqs 248 out of 710
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 12:54:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040409.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040409hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2plc_A PI-PLC, phosphatidylino 100.0 5.7E-35 2E-39 285.0 11.0 248 64-342 3-273 (274)
2 3ea1_A 1-phosphatidylinositol 100.0 3.8E-31 1.3E-35 260.8 10.4 262 57-345 3-296 (298)
3 3v1h_A 1-phosphatidylinositol 100.0 1.1E-29 3.8E-34 251.4 7.0 153 63-233 5-167 (306)
4 3h4x_A Phosphatidylinositol-sp 99.7 2.9E-18 1E-22 169.3 9.1 151 64-234 15-198 (339)
5 2zkm_X 1-phosphatidylinositol- 97.6 0.00016 5.5E-09 79.8 10.0 137 74-229 315-462 (799)
6 1djx_A PLC-D1, phosphoinositid 97.5 0.00013 4.3E-09 78.5 8.0 136 74-229 167-307 (624)
7 3qr0_A Phospholipase C-beta (P 97.2 0.00092 3.2E-08 73.9 9.9 138 74-229 326-470 (816)
8 3ohm_B 1-phosphatidylinositol- 97.2 0.0009 3.1E-08 74.6 9.2 138 74-229 319-466 (885)
9 3no3_A Glycerophosphodiester p 62.4 13 0.00045 34.2 6.3 75 105-179 20-107 (238)
10 3ks6_A Glycerophosphoryl diest 60.2 39 0.0013 31.2 9.2 36 105-140 16-52 (250)
11 2pz0_A Glycerophosphoryl diest 55.9 86 0.0029 28.7 10.8 37 104-140 24-61 (252)
12 3rlg_A Sphingomyelin phosphodi 54.9 19 0.00063 35.3 6.1 68 107-176 37-113 (302)
13 2o55_A Putative glycerophospho 54.9 60 0.002 29.8 9.5 111 105-221 22-160 (258)
14 1xx1_A Smase I, sphingomyelina 47.2 29 0.00098 32.4 6.0 69 110-179 18-95 (285)
15 3zxw_B Ribulose bisphosphate c 47.1 21 0.00073 30.2 4.5 32 147-179 61-92 (118)
16 1rbl_M Ribulose 1,5 bisphospha 46.4 23 0.00077 29.6 4.5 31 147-178 62-92 (109)
17 1svd_M Ribulose bisphosphate c 46.2 22 0.00076 29.7 4.4 31 147-178 64-94 (110)
18 1gk8_I Ribulose bisphosphate c 44.0 26 0.00089 30.6 4.6 28 151-178 84-111 (140)
19 1h59_B Insulin-like growth fac 42.0 8.5 0.00029 28.3 1.1 25 26-51 2-26 (54)
20 1bwv_S Rubisco, protein (ribul 41.9 28 0.00096 30.3 4.5 32 147-179 56-87 (138)
21 1bxn_I Rubisco, protein (ribul 41.2 28 0.00097 30.3 4.4 32 147-179 56-87 (139)
22 1vd6_A Glycerophosphoryl diest 39.9 82 0.0028 28.3 7.7 71 105-179 21-104 (224)
23 2dt7_A Splicing factor 3A subu 36.8 12 0.00042 25.4 1.2 22 150-171 12-33 (38)
24 4f0h_B Ribulose bisphosphate c 36.6 38 0.0013 29.5 4.5 31 147-178 56-86 (138)
25 1wdd_S Ribulose bisphosphate c 35.8 40 0.0014 28.9 4.5 31 147-178 74-104 (128)
26 1spv_A Putative polyprotein/ph 24.8 41 0.0014 30.0 2.8 35 154-190 135-171 (184)
27 2jtk_A Dickkopf-related protei 24.2 25 0.00084 28.5 1.1 24 26-51 7-30 (90)
28 2k7r_A Primosomal protein DNAI 23.3 27 0.00092 28.4 1.2 13 159-171 33-45 (106)
29 2otd_A Glycerophosphodiester p 21.5 67 0.0023 29.3 3.7 36 105-140 20-56 (247)
30 1zcc_A Glycerophosphodiester p 21.3 68 0.0023 29.4 3.7 36 105-140 15-51 (248)
31 1o1z_A GDPD, glycerophosphodie 20.5 70 0.0024 29.1 3.6 37 104-140 25-62 (234)
No 1
>2plc_A PI-PLC, phosphatidylinositol-specific phospholipase C; hydrolase, phospholipid degradation, virulence factor of human pathogen; 2.00A {Listeria monocytogenes} SCOP: c.1.18.2 PDB: 1aod_A*
Probab=100.00 E-value=5.7e-35 Score=284.98 Aligned_cols=248 Identities=16% Similarity=0.222 Sum_probs=162.6
Q ss_pred ccCCCccccCCccccCcccccCCcccccCCCCCCCCCCcccCCCCCcCHHHHHHcccceeeeeeeecCCcEEEEecCCCc
Q 040409 64 QPLNPTSKVKGLPFSKYSWLTTHNSYSLLGARPAIGPILVSPRNQEDTVTNQLNNGVRGFMLDMYDFNNDIWLCHSTGGR 143 (417)
Q Consensus 64 ~p~~~~~~l~~lpln~ltipGTHNS~a~~g~~s~~g~~~~~~~nQ~~sIt~QL~~GVR~LdLrv~~~~~~l~lcH~~~g~ 143 (417)
.+.|+...-+++||++|+||||||||++.+..+ ......++.||+.+|++||++|||+||||++ +++++|||.
T Consensus 3 ~~~WM~~l~~~~~l~~l~ipGtHdS~~~~~~~~-~~~~~~~~~~Q~~~i~~QL~~GvR~ldlr~~---~~~~~~H~~--- 75 (274)
T 2plc_A 3 TKQWMSALPDTTNLAALSIPGTHDTMSYNGDIT-WTLTKPLAQTQTMSLYQQLEAGIRYIDIRAK---DNLNIYHGP--- 75 (274)
T ss_dssp GGGTGGGSCTTCBGGGSEEEEETTTTTTSCSHH-HHHTHHHHCCCSSCHHHHHHTTCCEEEEEEC---TTSEEEETT---
T ss_pred hhhHhhcCCCCCeeeeeeeeeecchhhccCCCc-cccccccccCCCcCHHHHHHhCCcEEEEEEC---CcEEEEEcC---
Confidence 466777777899999999999999998864210 0001237899999999999999999999999 789999995
Q ss_pred cccccCcccHHHHHHHHHHHHhcCCCcEEEEEEecccCCchh----HHHHHHhcCCCCeeecCCCCCCCCCCCCcHHHHH
Q 040409 144 CFNFTAFQPAINVLREIQTFLQANPSEIVTIFIEDYVTSSQG----LTKVFKASGLSNYMFPVSKMPKNGGDWPIVDDMV 219 (417)
Q Consensus 144 C~l~~~~~~l~dvL~eI~~FL~~nP~EVV~L~~edy~~~~~~----l~~~f~~~GL~~~l~pps~~~~~~~~wPTL~emi 219 (417)
|. .. .+++++|+||++||++||+|||||+|++....... +..+++ ++.+++|+|+++ ....+||||+||
T Consensus 76 ~~--~~-~~~~~~L~~i~~fL~~~P~EvVil~~~~~~~~~~~~~~~~~~l~~--~l~~~~~~~~~~-~~~~~~pTL~e~- 148 (274)
T 2plc_A 76 IF--LN-ASLSGVLETITQFLKKNPKETIIMRLKDEQNSNDSFDYRIQPLIN--IYKDYFYTTPRT-DTSNKIPTLKDV- 148 (274)
T ss_dssp EE--EE-EEHHHHHHHHHHHHHHSTTCCEEEEEEETTCSCSHHHHHHHHHHH--HTGGGBCEEESS-CCCCCCCBTTTT-
T ss_pred CC--CC-CCHHHHHHHHHHHHHhCCCceEEEEEEeCCCCCCcHHHHHHHHHH--HhhceeecCccc-ccCCCCCCHHHh-
Confidence 43 22 68999999999999999999999999973222212 234443 566999987654 235789999999
Q ss_pred hcCcEEEEEecCCCCccccccccc--ccee-------eeCCCCCCCC-CCC---CCC-CCCCCCCCCCCCCceEEeecCC
Q 040409 220 KQNQRLVVFTSKSSKEASEGIAYQ--WRYV-------VENQYGNEGM-NDG---SCQ-NRAESSPLNTKTRSLVLQNYFP 285 (417)
Q Consensus 220 ~~gkRVVVf~~~~~~~~~~gi~~~--~~y~-------~en~~~~~~l-~~~---sC~-~R~~s~~l~~~~~~L~l~Nhf~ 285 (417)
+||||||++.... .+..|+. |.+. +++.|..... ..+ .+. .+.. ...+.+ .+||..
T Consensus 149 -rGK~vlv~~~~~~---~~~~~~~~~~~~~w~~~~~~iqD~y~~~~~~~K~~~i~~~l~~a~-----~~~~~~-~iN~~S 218 (274)
T 2plc_A 149 -RGKILLLSENHTK---KPLVINSRKFGMQFGAPNQVIQDDYNGPSVKTKFKEIVQTAYQAS-----KADNKL-FLNHIS 218 (274)
T ss_dssp -TTCEEEEEESTTC---SCEEETTEEESEETTCTTEEEECCCBSCCHHHHHHHHHHHHHHHH-----HCSSSE-EEEECC
T ss_pred -CCCEEEEEeCCCC---CCCCcCcccccccCCCCCccccccCCCCcHHHHHHHHHHHHHHhh-----cCCCCe-EEEEEc
Confidence 6999999976421 1222331 1121 3333322110 000 000 1110 012334 457754
Q ss_pred CC-----CCcccccccCchhHHHHHHHhhhccCCCCceEEEeeccccCCCCChHHHHHHHcC
Q 040409 286 TN-----PNATEACLDNSAPLTKMMNTCYDAAGKRWPNFIAVDFYQRSDGGGTPEAIDEANG 342 (417)
Q Consensus 286 t~-----P~~~~a~~~Ns~~L~~~~~~C~~~~g~r~pNfIaVDFy~~s~~G~~~~aV~~lN~ 342 (417)
.. | +..|...|. .+..+++.+.... .+.+|||++||++. +++++|+++|.
T Consensus 219 ~~~~~~~p-~~~A~~~n~-~l~~~l~~~~~~~-~~~~gIV~~DFv~~----~~i~~vI~~N~ 273 (274)
T 2plc_A 219 ATSLTFTP-RQYAAALNN-KVEQFVLNLTSEK-VRGLGILIMDFPEK----QTIKNIIKNNK 273 (274)
T ss_dssp CBCSSSCH-HHHHHHHHH-HHHHHHHHHHHTT-CCCCEEEEESSCCH----HHHHHHHTTSC
T ss_pred ccCCCCCH-HHHHHHHhH-HHHHHHHHHhcCC-CCcccEEEEeCCCc----hhHHHHHhccC
Confidence 31 2 112222232 2445555554433 45699999999973 68999999996
No 2
>3ea1_A 1-phosphatidylinositol phosphodiesterase; phosphatidylinositol-specific phospholipase C, PI-PLC, dimer, interfacially impaired; 1.75A {Bacillus thuringiensis} SCOP: c.1.18.2 PDB: 3ea2_A* 3ea3_A 1t6m_A 2or2_A 1gym_A* 1ptd_A 1ptg_A* 7ptd_A 2ptd_A 4ptd_A 3ptd_A 6ptd_A 5ptd_A
Probab=99.97 E-value=3.8e-31 Score=260.77 Aligned_cols=262 Identities=17% Similarity=0.191 Sum_probs=165.6
Q ss_pred CCcccccccCCCccccCCccccCcccccCCcccccCCCCCCCCCCcccCCCCCcCHHHHHHcccceeeeeeeec-CCcEE
Q 040409 57 RPRCARIQPLNPTSKVKGLPFSKYSWLTTHNSYSLLGARPAIGPILVSPRNQEDTVTNQLNNGVRGFMLDMYDF-NNDIW 135 (417)
Q Consensus 57 ~~~c~r~~p~~~~~~l~~lpln~ltipGTHNS~a~~g~~s~~g~~~~~~~nQ~~sIt~QL~~GVR~LdLrv~~~-~~~l~ 135 (417)
...|...++.|+....+++||++|+|||||||+++....+ . ...|+.||+.+|++||++||||||||++.. ++++|
T Consensus 3 ~~~~~~~~~~WM~~l~d~~pl~~lsiPGTHdS~a~~~~~~-~--~~~~~~tQ~~si~~QL~~GIR~lDlRv~~~~~~~l~ 79 (298)
T 3ea1_A 3 SVNELENWSKWMQPIPDNIPLARISIPGTHDSGTFKLQNP-I--KQVWGMTQEYDFRYQMDHGARIFDIRGRLTDDNTIV 79 (298)
T ss_dssp CGGGGGCTTSTTTTSCTTSBTTTSCEEEETTTTCTTCCSH-H--HHHHHCCCSSCHHHHHHTTCCEEEEEEEECTTSCEE
T ss_pred chhhhhcHHHHHHhCccCCeeeeeeeccccccccccCCCc-h--hhhcccCccccHHHHHhcCCeEEEEEeEecCCCcEE
Confidence 4569999999999999999999999999999999864321 0 124789999999999999999999999876 46899
Q ss_pred EEecCCCccccccCcccHHHHHHHHHHHHhcCCCcEEEEEEec-ccC---CchhHHHHHHhcCCCCeeecCCCCCCCCCC
Q 040409 136 LCHSTGGRCFNFTAFQPAINVLREIQTFLQANPSEIVTIFIED-YVT---SSQGLTKVFKASGLSNYMFPVSKMPKNGGD 211 (417)
Q Consensus 136 lcH~~~g~C~l~~~~~~l~dvL~eI~~FL~~nP~EVV~L~~ed-y~~---~~~~l~~~f~~~GL~~~l~pps~~~~~~~~ 211 (417)
+|||. |++. .++.++|+||++||++||+|||||+|++ |.. ....|.+.+...-+.+.++ .....
T Consensus 80 ~~Hg~---~~~~---~~l~dvL~ei~~FL~~hP~EvVil~ik~e~~~~~~~~~~f~~~~~~~~~~~~~~------~~~~~ 147 (298)
T 3ea1_A 80 LHHGP---LYLY---VTLHEFINEAKQFLKDNPSETIIMSLKKEYEDMKGAEGSFSSTFEKNYFVDPIF------LKTEG 147 (298)
T ss_dssp EEETT---EEEE---EEHHHHHHHHHHHHHHCTTCCEEEEEEECSCCCTTCSSCHHHHHHHHTTTSTTB------CCCCS
T ss_pred EECCc---cccc---CCHHHHHHHHHHHHHHCCCeEEEEEEEecCCCcCcchHHHHHHHHHHHhcCccc------ccCCC
Confidence 99994 5542 6899999999999999999999999986 421 1235666554311112222 12467
Q ss_pred CCcHHHHHhcCcEEEEEecCCCCcccccccc-ccc--------------eeeeCCCCCCCCCCC----CCCCCCCCCCCC
Q 040409 212 WPIVDDMVKQNQRLVVFTSKSSKEASEGIAY-QWR--------------YVVENQYGNEGMNDG----SCQNRAESSPLN 272 (417)
Q Consensus 212 wPTL~emi~~gkRVVVf~~~~~~~~~~gi~~-~~~--------------y~~en~~~~~~l~~~----sC~~R~~s~~l~ 272 (417)
||||+|+| || ||++.+........|+.. .|. ..+++.|....-..+ .+-.|.... .
T Consensus 148 ~ptLge~R--GK-ivll~rf~~~~~~~g~~~~~W~dn~~f~~~~~~~~~~~vQD~y~v~~~~K~~~I~~~l~~a~~~--~ 222 (298)
T 3ea1_A 148 NIKLGDAR--GK-IVLLKRYSGSNESGGYNNFYWPDNETFTTTVNQNVNVTVQDKYKVNYDEKVKSIKDTMDETMNN--S 222 (298)
T ss_dssp SCBHHHHT--TS-EEEEEESSCCCSCCSBCCCCCCTTSEEEEECSSSCEEEEECCTTSCHHHHHHHHHHHHHHHHTT--T
T ss_pred CCcHHHhc--CC-EEEEEecCCcccCCCcCcccCCCccccccccCCCccEEeCceeecCcHHHHHHHHHHHHHhhcc--c
Confidence 99999996 76 555666554332223321 121 133333332100000 000111000 0
Q ss_pred CCCCceEEeecCCCC--------CCcccccccCchhHHHHHHHhhhccCCCCceEEEeeccccCCCCChHHHHHHHcCcc
Q 040409 273 TKTRSLVLQNYFPTN--------PNATEACLDNSAPLTKMMNTCYDAAGKRWPNFIAVDFYQRSDGGGTPEAIDEANGRL 344 (417)
Q Consensus 273 ~~~~~L~l~Nhf~t~--------P~~~~a~~~Ns~~L~~~~~~C~~~~g~r~pNfIaVDFy~~s~~G~~~~aV~~lN~~l 344 (417)
.....|| +||.-.+ | ...|...|- .+.+.. |.... +..=+|..||++..-+.+..+.+++.|..|
T Consensus 223 ~~~~~~y-inf~S~s~g~~~~~~P-~~~A~~iNp-~~~~~l--~~~~~--~~~Giv~~DF~~~~~~~~l~~~li~~n~~~ 295 (298)
T 3ea1_A 223 EDLNHLY-INFTSLSSGGTAWNSP-YSYASSINP-EIANDI--KQKNP--TRVGWVIQDYINEKWSPLLYQEVIRANKSL 295 (298)
T ss_dssp TCTTEEE-EEECCCCCCSSGGGSH-HHHHHHHHH-HHHHHH--HHHCC--SCCCEEEESCCSSSSSSCHHHHHHHTTGGG
T ss_pred ccCCcEE-EEEEcccCCCcccCCH-HHHHHhhCH-HHHHHH--HhcCC--CceeEEEEecCCCccchHHHHHHHHhhHHh
Confidence 1123444 4775432 2 122332231 122222 22222 347799999998644468999999999776
Q ss_pred c
Q 040409 345 T 345 (417)
Q Consensus 345 ~ 345 (417)
+
T Consensus 296 ~ 296 (298)
T 3ea1_A 296 I 296 (298)
T ss_dssp C
T ss_pred h
Confidence 4
No 3
>3v1h_A 1-phosphatidylinositol phosphodiesterase; PI-cation, TIM barrel, phospholipase, lyase; HET: INS; 1.90A {Staphylococcus aureus subsp} PDB: 4f2b_A* 4f2u_A* 4f2t_A 3v18_A 3v16_A*
Probab=99.96 E-value=1.1e-29 Score=251.41 Aligned_cols=153 Identities=17% Similarity=0.227 Sum_probs=117.6
Q ss_pred cccCCCccccCCccccCcccccCCcccccCCCCCCCCCCcccCCCCCcCHHHHHHcccceeeeeeeec-CCcEEEEecCC
Q 040409 63 IQPLNPTSKVKGLPFSKYSWLTTHNSYSLLGARPAIGPILVSPRNQEDTVTNQLNNGVRGFMLDMYDF-NNDIWLCHSTG 141 (417)
Q Consensus 63 ~~p~~~~~~l~~lpln~ltipGTHNS~a~~g~~s~~g~~~~~~~nQ~~sIt~QL~~GVR~LdLrv~~~-~~~l~lcH~~~ 141 (417)
..+.|+...-+++||++|+||||||||++....+ . ...|+.||+.+|++||++||||||||++.. ++.+|+|||.
T Consensus 5 ~~~~WM~~l~d~~~l~~lsiPGTHdS~~~~~~~p-~--~~~~~~tQ~~si~~QL~~GVR~lDlRv~~~~~~~l~~~Hg~- 80 (306)
T 3v1h_A 5 SPENWMSKLDDGKHLTEINIPGSHDSGSFTLKDP-V--KSVWAKTQDKDYLTQMKSGVRFFDIRGRASADNMISVHHGM- 80 (306)
T ss_dssp SGGGSGGGSCTTSBGGGSCEEEETTGGGGGCCCH-H--HHHHHCCCSSCHHHHHHTTCCEEEEEEEEEETTEEEEEETT-
T ss_pred ChhhHHhcCCCCCEeecceeccccchhhccCCCc-c--cchhhccCCCCHHHHHHhCcceEEEEeeecCCCcEEEEccC-
Confidence 4567788777899999999999999999863221 1 123789999999999999999999999864 6789999994
Q ss_pred CccccccCcccHHHHHHHHHHHHhcCCCcEEEEEEecccCC----chhHHHHHHhc-----CCCCeeecCCCCCCCCCCC
Q 040409 142 GRCFNFTAFQPAINVLREIQTFLQANPSEIVTIFIEDYVTS----SQGLTKVFKAS-----GLSNYMFPVSKMPKNGGDW 212 (417)
Q Consensus 142 g~C~l~~~~~~l~dvL~eI~~FL~~nP~EVV~L~~edy~~~----~~~l~~~f~~~-----GL~~~l~pps~~~~~~~~w 212 (417)
|++ + .++.++|+||++||++||+|||||+|+++... ...|.++|+.. +..+++|.. ...+
T Consensus 81 --~~~--~-~~l~dvL~~i~~FL~~hP~EvVil~l~~e~~~~~~~~~~f~~~~~~~~~~~~~~~~~~y~~------~~~~ 149 (306)
T 3v1h_A 81 --VYL--H-HELGKFLDDAKYYLSAYPNETIVMSMKKDYDSDSKVTKTFEEIFREYYYNNPQYQNLFYTG------SNAN 149 (306)
T ss_dssp --EEE--E-EEHHHHHHHHHHHHHHSTTCCEEEEEEECSCCCTTCCSCHHHHHHHHTTTCGGGTTTBCCC------SCSS
T ss_pred --ccc--C-CcHHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCccchHHHHHHHHHHhhcCcccccceecC------CCCC
Confidence 654 2 79999999999999999999999999975322 24677777531 223455532 2469
Q ss_pred CcHHHHHhcCcEEEEEecCCC
Q 040409 213 PIVDDMVKQNQRLVVFTSKSS 233 (417)
Q Consensus 213 PTL~emi~~gkRVVVf~~~~~ 233 (417)
|||+|+| ||- |++.+...
T Consensus 150 PtLge~R--GKI-vll~rf~~ 167 (306)
T 3v1h_A 150 PTLKETK--GKI-VLFNRMGG 167 (306)
T ss_dssp CBHHHHT--TSE-EEEEESSS
T ss_pred CchHHhc--CcE-EEEEecCC
Confidence 9999997 764 44555543
No 4
>3h4x_A Phosphatidylinositol-specific phospholipase C1; PI-PLC, Ca2+-dependent, catalytic TIM barrel, disulfide-LINK loop, hydrolase; 1.23A {Streptomyces antibioticus} PDB: 3h4w_A
Probab=99.74 E-value=2.9e-18 Score=169.28 Aligned_cols=151 Identities=15% Similarity=0.268 Sum_probs=102.8
Q ss_pred ccCCCccccCCccccCcccccCCcccccCCCCCCCCCCcccCCCCCcCHHHHHHcccceeeeeeeec--CCcEEEEecC-
Q 040409 64 QPLNPTSKVKGLPFSKYSWLTTHNSYSLLGARPAIGPILVSPRNQEDTVTNQLNNGVRGFMLDMYDF--NNDIWLCHST- 140 (417)
Q Consensus 64 ~p~~~~~~l~~lpln~ltipGTHNS~a~~g~~s~~g~~~~~~~nQ~~sIt~QL~~GVR~LdLrv~~~--~~~l~lcH~~- 140 (417)
-|-+...+.++.||++++++|+||||.... ..+|.+||+.|||.||||||.. .+++.+||+.
T Consensus 15 ~~~~~~~~~~~~pls~~T~~g~HNSY~~g~---------------~~~i~~qLd~GVR~LELDIw~n~~~g~~~V~Hg~~ 79 (339)
T 3h4x_A 15 VPRGSHMEPAATTYGTSTSVGVHNAYEKEK---------------YRYFADALDSGAALLELDLWSNALGRSWRVSHSNP 79 (339)
T ss_dssp ----------CCBTTSEEEEEETTTTCTTT---------------CSSHHHHHTTCCSEEEEEEESSSSSSSCEECSSSC
T ss_pred ccCCCCCCcccCccccceEeeccccccccC---------------cccHHHHHHhCCCEEEEEeecCCCCCCeEEeCCCc
Confidence 456677788999999999999999997521 4799999999999999999965 6789999974
Q ss_pred ---CCcccc-------cc--CcccHHHHHHHHHHHHhcCCCcE-EEEEEecccC-------CchhHHHHHH-hcCCCCee
Q 040409 141 ---GGRCFN-------FT--AFQPAINVLREIQTFLQANPSEI-VTIFIEDYVT-------SSQGLTKVFK-ASGLSNYM 199 (417)
Q Consensus 141 ---~g~C~l-------~~--~~~~l~dvL~eI~~FL~~nP~EV-V~L~~edy~~-------~~~~l~~~f~-~~GL~~~l 199 (417)
..+|.. ++ ...+|.++|++||+|+++||+|+ |+|.+|++.. .+..+.+.+. .+| +.+
T Consensus 80 l~~~nnC~~as~~~dL~t~Tt~~tL~~CL~~IK~WsdahPsh~PViI~LE~K~t~~~~~g~~p~~lDaeI~~vFG--d~L 157 (339)
T 3h4x_A 80 LGNNSNCEGAANASELRTKSRDQDFAGCLSDMRAWHDAHPGHRPILLKIEMKDGFNAKGGRGPAEFDALIRQKLG--DAV 157 (339)
T ss_dssp SSCCSSCCCCSSGGGTTCSCCCCCHHHHHHHHHHHHHHSTTCCCEEEEEEETTCCBGGGTBSHHHHHHHHHHHHG--GGB
T ss_pred ccccccccccccccccccCCCCcCHHHHHHHHHHHHHhCCCCCceEEEEecccCcccccCcCHHHHHHHHHHHhc--cce
Confidence 123763 21 23689999999999999999997 7777775421 1245666555 367 777
Q ss_pred ecCCCCC---C------CCCCCCcHHHHHhcCcEEEEEecCCCC
Q 040409 200 FPVSKMP---K------NGGDWPIVDDMVKQNQRLVVFTSKSSK 234 (417)
Q Consensus 200 ~pps~~~---~------~~~~wPTL~emi~~gkRVVVf~~~~~~ 234 (417)
|.|+... . ....||||++++ | |||+..+.+..
T Consensus 158 ~tPddvrG~~~TL~eAVla~GWPSl~slR--G-KVlf~Ld~Gtv 198 (339)
T 3h4x_A 158 YGPGDLTGGHATADEAVRAGGWPSRADLA--G-KFLFELIPGTV 198 (339)
T ss_dssp CCHHHHHTTSSSHHHHHHHHCCCBTGGGT--T-CEEEEEEECTT
T ss_pred EcchhhcccccCHHHHHhcCCCCChHHhC--C-CEEEEEeCCcc
Confidence 7654210 0 113599999997 5 46666665543
No 5
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=97.60 E-value=0.00016 Score=79.78 Aligned_cols=137 Identities=18% Similarity=0.255 Sum_probs=93.8
Q ss_pred CccccCcccccCCcccccCCCCCCCCCCcccCCCCCcCHHHHHHcccceeeeeeeec---CCcEEEEecCCCccccccCc
Q 040409 74 GLPFSKYSWLTTHNSYSLLGARPAIGPILVSPRNQEDTVTNQLNNGVRGFMLDMYDF---NNDIWLCHSTGGRCFNFTAF 150 (417)
Q Consensus 74 ~lpln~ltipGTHNS~a~~g~~s~~g~~~~~~~nQ~~sIt~QL~~GVR~LdLrv~~~---~~~l~lcH~~~g~C~l~~~~ 150 (417)
+.||++|-|-.+||+|-.. .. +.+..=.....+-|..|+|-++||+++. +++..++||. .++.-
T Consensus 315 ~~PLshYfI~SSHNTYL~g-~Q-------l~g~ss~e~y~~aL~~GcRcvElD~Wdg~~~~~ep~v~HG~-----Tlts~ 381 (799)
T 2zkm_X 315 TQPLNHYFINSSHNTYLTA-GQ-------FSGLSSAEMYRQVLLSGCRCVELDCWKGKPPDEEPIITHGF-----TMTTD 381 (799)
T ss_dssp CSCGGGEEECBBSSTTBSS-CS-------SSSCBCTHHHHHHHHTTCCEEEEEEECCCTTCCSCEECCTT-----SSCCC
T ss_pred CCchhhheEeccccceeec-Cc-------ccCcccHHHHHHHHHhCCCEEEEEeecCCCCCCCCEEEeCC-----ccccc
Confidence 8999999999999998652 21 1223334567888999999999999976 4678899994 23445
Q ss_pred ccHHHHHHHHHHHHhcCCCcE-EEEEEecccCCc---hhHHHHHH-hcCCCCeeecCC-C-CC-CCCCCCCcHHHHHhcC
Q 040409 151 QPAINVLREIQTFLQANPSEI-VTIFIEDYVTSS---QGLTKVFK-ASGLSNYMFPVS-K-MP-KNGGDWPIVDDMVKQN 222 (417)
Q Consensus 151 ~~l~dvL~eI~~FL~~nP~EV-V~L~~edy~~~~---~~l~~~f~-~~GL~~~l~pps-~-~~-~~~~~wPTL~emi~~g 222 (417)
.+|.|+++.|+++-=.. ++- |||.||++-.++ ..+.++++ .+| +.+|.+. . .+ ..+...|+.++|.
T Consensus 382 i~f~~v~~~I~~~AF~~-S~yPvIlslE~Hc~s~~qQ~~ma~~~~~~~G--d~L~~~~~~~~~~~~~~~lPSP~~Lk--- 455 (799)
T 2zkm_X 382 IFFKEAIEAIAESAFKT-SPYPIILSFENHVDSPRQQAKMAEYCRTIFG--DMLLTEPLEKFPLKPGVPLPSPEDLR--- 455 (799)
T ss_dssp EEHHHHHHHHHHHTTSS-CCSCEEEEEEECCCCHHHHHHHHHHHHHHHG--GGBCCSCCTTSCSSTTCCCCCTTTTT---
T ss_pred ccHHHHHHHHHHhcccC-CCCCEEEEccccCCCHHHHHHHHHHHHHHhh--hheecCCccccccccCCCCCCHHHHC---
Confidence 78999999999864322 333 899999774132 23344444 346 8887532 1 11 2246799999995
Q ss_pred cEEEEEe
Q 040409 223 QRLVVFT 229 (417)
Q Consensus 223 kRVVVf~ 229 (417)
+||||-.
T Consensus 456 ~kIlik~ 462 (799)
T 2zkm_X 456 GKILIKN 462 (799)
T ss_dssp TCEEEEC
T ss_pred CCEEEEe
Confidence 4566543
No 6
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A
Probab=97.54 E-value=0.00013 Score=78.47 Aligned_cols=136 Identities=19% Similarity=0.292 Sum_probs=92.5
Q ss_pred CccccCcccccCCcccccCCCCCCCCCCcccCCCCCcCHHHHHHcccceeeeeeeec-CCcEEEEecCCCccccccCccc
Q 040409 74 GLPFSKYSWLTTHNSYSLLGARPAIGPILVSPRNQEDTVTNQLNNGVRGFMLDMYDF-NNDIWLCHSTGGRCFNFTAFQP 152 (417)
Q Consensus 74 ~lpln~ltipGTHNS~a~~g~~s~~g~~~~~~~nQ~~sIt~QL~~GVR~LdLrv~~~-~~~l~lcH~~~g~C~l~~~~~~ 152 (417)
+.||++|-|-.+||+|-. |.. +.+..=.....+-|..|.|-++||+++. +++..++||. .++.-.+
T Consensus 167 ~~pLs~Yfi~SsHNTYL~-G~Q-------l~~~ss~e~y~~aL~~GcRcvElD~wdg~~~ep~v~HG~-----tlts~i~ 233 (624)
T 1djx_A 167 DQPLSHYLVSSSHNTYLL-EDQ-------LTGPSSTEAYIRALCKGCRCLELDCWDGPNQEPIIYHGY-----TFTSKIL 233 (624)
T ss_dssp TSCGGGEEECEESSTTBS-SCS-------SSCCBCHHHHHHHHHTTCCEEEEEEECCGGGCCEECCTT-----SCCCCEE
T ss_pred cCcchhheeecccchhhh-cCc-------ccCCcCHHHHHHHHHhCCcEEEEEeecCCCCCeEEecCC-----ccccccc
Confidence 789999999999999975 332 1222224567788999999999999975 5678899994 2344578
Q ss_pred HHHHHHHHHHHHhcCCCcE-EEEEEecccCCc--hhHHHHHH-hcCCCCeeecCCCCCCCCCCCCcHHHHHhcCcEEEEE
Q 040409 153 AINVLREIQTFLQANPSEI-VTIFIEDYVTSS--QGLTKVFK-ASGLSNYMFPVSKMPKNGGDWPIVDDMVKQNQRLVVF 228 (417)
Q Consensus 153 l~dvL~eI~~FL~~nP~EV-V~L~~edy~~~~--~~l~~~f~-~~GL~~~l~pps~~~~~~~~wPTL~emi~~gkRVVVf 228 (417)
|.|+++.|+++-=.. ++- |||.||++-... ..+.++++ .+| +.+|.+... .....+|+.++|. | ||||-
T Consensus 234 f~~v~~~I~~~AF~~-s~yPvilslE~Hc~~~qQ~~ma~~~~~~~g--d~L~~~~~~-~~~~~lpsp~~Lk--~-kilik 306 (624)
T 1djx_A 234 FCDVLRAIRDYAFKA-SPYPVILSLENHCSLEQQRVMARHLRAILG--PILLDQPLD-GVTTSLPSPEQLK--G-KILLK 306 (624)
T ss_dssp HHHHHHHHHHHTTTS-CSSCEEEEEEEECCHHHHHHHHHHHHHHHG--GGBCCSCCT-TCCSSCCCTTTTT--T-CEEEE
T ss_pred HHHHHHHHHHhcccC-CCCCEEEEecccCCHHHHHHHHHHHHHHHh--hhhcCCCcc-CCcCCCCCHHHHC--C-CEEEE
Confidence 999999999874322 333 899999763211 23344443 346 888854211 1246799999995 4 55554
Q ss_pred e
Q 040409 229 T 229 (417)
Q Consensus 229 ~ 229 (417)
.
T Consensus 307 ~ 307 (624)
T 1djx_A 307 G 307 (624)
T ss_dssp E
T ss_pred e
Confidence 3
No 7
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Probab=97.20 E-value=0.00092 Score=73.92 Aligned_cols=138 Identities=17% Similarity=0.219 Sum_probs=92.1
Q ss_pred CccccCcccccCCcccccCCCCCCCCCCcccCCCCCcCHHHHHHcccceeeeeeeec-CCcEEEEecCCCccccccCccc
Q 040409 74 GLPFSKYSWLTTHNSYSLLGARPAIGPILVSPRNQEDTVTNQLNNGVRGFMLDMYDF-NNDIWLCHSTGGRCFNFTAFQP 152 (417)
Q Consensus 74 ~lpln~ltipGTHNS~a~~g~~s~~g~~~~~~~nQ~~sIt~QL~~GVR~LdLrv~~~-~~~l~lcH~~~g~C~l~~~~~~ 152 (417)
+.||++|-|-.+||+|-.. .. +.+..-.....+-|..|.|-++||+++. +++..++||. .++.-.+
T Consensus 326 ~~Pl~~YfI~sshntyL~g-~q-------l~g~ss~~~y~~aL~~gcRcvEld~wdg~~~ePvv~HG~-----Tlts~i~ 392 (816)
T 3qr0_A 326 KLTLAAYYINSSHNTYLTG-HQ-------LTGKSSVEIYRQVLLTGCRCLELDCWDGKDGEPIITHGF-----TMCTEVL 392 (816)
T ss_dssp CSCGGGEEECBBSSTTBSS-CT-------TTSCBCSHHHHHHHHTTCCEEEEEEECCTTSSCEECCTT-----SSCCCEE
T ss_pred CCchhhheecccccchhcc-cc-------ccCcccHHHHHHHHHhCCcEEEEEEecCCCCCceEccCC-----ccccccc
Confidence 7899999999999998653 21 1222223557788999999999999975 5678899994 2344478
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEEecccCCc--hhHHHHHH-hcCCCCeeecCC-C-CC-CCCCCCCcHHHHHhcCcEEE
Q 040409 153 AINVLREIQTFLQANPSEIVTIFIEDYVTSS--QGLTKVFK-ASGLSNYMFPVS-K-MP-KNGGDWPIVDDMVKQNQRLV 226 (417)
Q Consensus 153 l~dvL~eI~~FL~~nP~EVV~L~~edy~~~~--~~l~~~f~-~~GL~~~l~pps-~-~~-~~~~~wPTL~emi~~gkRVV 226 (417)
|.++++.|+++-=..-.==|||.||++-... ..+.++++ .+| +.++.+. . .+ ..+...|+.++|. +|||
T Consensus 393 f~~v~~~I~~~AF~~S~yPvIlslE~Hc~~~qQ~~ma~~~~~~~G--d~L~~~~~~~~~~~~~~~lpsP~~Lk---~kIl 467 (816)
T 3qr0_A 393 FKDVVYAIAESAFKVSDYPVILSFENHCSVAQQKLLAQYCNEAFG--ELLLDKPIDGHPLKPGVPLPTPYDLR---KKIL 467 (816)
T ss_dssp HHHHHHHHHHHTTSSCCSCEEEEEEECCCHHHHHHHHHHHHHHHG--GGBCCSCCTTCCSSTTCCCCCTTTTT---TCEE
T ss_pred HHHHHHHHHHhcccCCCCCEEEEEecCCCHHHHHHHHHHHHHHhh--hhhccCCccccccccCCcCCCHHHHc---CCEE
Confidence 9999999998754332223889999763221 12334443 346 8887522 1 11 1235799999995 3556
Q ss_pred EEe
Q 040409 227 VFT 229 (417)
Q Consensus 227 Vf~ 229 (417)
|-.
T Consensus 468 ik~ 470 (816)
T 3qr0_A 468 IKN 470 (816)
T ss_dssp EEC
T ss_pred EEe
Confidence 554
No 8
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Probab=97.15 E-value=0.0009 Score=74.58 Aligned_cols=138 Identities=21% Similarity=0.294 Sum_probs=91.9
Q ss_pred CccccCcccccCCcccccCCCCCCCCCCcccCCCCCcCHHHHHHcccceeeeeeeec---CCcEEEEecCCCccccccCc
Q 040409 74 GLPFSKYSWLTTHNSYSLLGARPAIGPILVSPRNQEDTVTNQLNNGVRGFMLDMYDF---NNDIWLCHSTGGRCFNFTAF 150 (417)
Q Consensus 74 ~lpln~ltipGTHNS~a~~g~~s~~g~~~~~~~nQ~~sIt~QL~~GVR~LdLrv~~~---~~~l~lcH~~~g~C~l~~~~ 150 (417)
+.||++|-|-.+||+|-.. .. +....-.....+-|..|.|-++||+++. +++..++||. .++..
T Consensus 319 ~~Pls~YfI~ssHNtYL~g-~Q-------l~~~ss~~~y~~aL~~gcRcvEld~wdg~~~~~ep~v~hg~-----t~t~~ 385 (885)
T 3ohm_B 319 TQPLSAYFINSSHNTYLTA-GQ-------LAGTSSVEMYRQALLWGCRCVELDVWKGRPPEEEPFITHGF-----TMTTE 385 (885)
T ss_dssp CSCGGGEEECCBSSTTBSS-CS-------SEECBCSHHHHHHHHTTCCEEEEEEECCCSSSCCCEECSTT-----SEECC
T ss_pred Ccchhhheeeccccceecc-cc-------ccCcCcHHHHHHHHHhCCCEEEEEeeCCCCCCCCCEEeeCC-----cccCc
Confidence 7899999999999998652 21 1222223456788999999999999975 5789999995 23445
Q ss_pred ccHHHHHHHHHHHHhcCCCcEEEEEEecccCCc---hhHHHHHH-hcCCCCeeecCC--CCC-CCCCCCCcHHHHHhcCc
Q 040409 151 QPAINVLREIQTFLQANPSEIVTIFIEDYVTSS---QGLTKVFK-ASGLSNYMFPVS--KMP-KNGGDWPIVDDMVKQNQ 223 (417)
Q Consensus 151 ~~l~dvL~eI~~FL~~nP~EVV~L~~edy~~~~---~~l~~~f~-~~GL~~~l~pps--~~~-~~~~~wPTL~emi~~gk 223 (417)
.+|.++++.|+++-=..-.==|||.||++-.++ ..+.++++ .+| +.+|.+. ..+ ......|+.++|. |
T Consensus 386 i~f~~v~~~i~~~af~~s~yPvilsle~h~~~~~qq~~~a~~~~~~~g--~~L~~~~~~~~~~~~~~~lpsp~~Lk--~- 460 (885)
T 3ohm_B 386 VPLRDVLEAIAETAFKTSPYPVILSFENHVDSAKQQAKMAEYCRSIFG--DALLIEPLDKYPLAPGVPLPSPQDLM--G- 460 (885)
T ss_dssp EEHHHHHHHHHHHTTSSCCSCEEEEEEEECCCTTHHHHHHHHHHHHHG--GGBCCSCBTTBCSSSSCCCCCTTTTT--T-
T ss_pred ccHHHHHHHHHHhhccCCCCCEEEEEecCCCCHHHHHHHHHHHHHHhh--HhhccCcccccccccCCcCCCHHHHc--C-
Confidence 789999999998754332223888899653222 23344443 346 7777432 111 2245789999995 3
Q ss_pred EEEEEe
Q 040409 224 RLVVFT 229 (417)
Q Consensus 224 RVVVf~ 229 (417)
||||-.
T Consensus 461 kilik~ 466 (885)
T 3ohm_B 461 RILVKN 466 (885)
T ss_dssp CEEEEC
T ss_pred cEEEEe
Confidence 455543
No 9
>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} SCOP: c.1.18.0
Probab=62.40 E-value=13 Score=34.22 Aligned_cols=75 Identities=12% Similarity=0.067 Sum_probs=48.3
Q ss_pred CCCCCcCHHHHHHcccceeeeeeee-cCCcEEEEecCC--C-ccccccC---------cccHHHHHHHHHHHHhcCCCcE
Q 040409 105 PRNQEDTVTNQLNNGVRGFMLDMYD-FNNDIWLCHSTG--G-RCFNFTA---------FQPAINVLREIQTFLQANPSEI 171 (417)
Q Consensus 105 ~~nQ~~sIt~QL~~GVR~LdLrv~~-~~~~l~lcH~~~--g-~C~l~~~---------~~~l~dvL~eI~~FL~~nP~EV 171 (417)
..|=-.++..-++.|++++++||+. .+|.+.+.|... + .-..++- .+.-.-.|+|+.+++..+|+-.
T Consensus 20 pENTl~Af~~A~~~G~d~iE~DV~lT~Dg~~Vv~HD~~l~~~~v~~~t~~el~~l~~~~~~~iptL~evl~~~~~~~~~~ 99 (238)
T 3no3_A 20 AQNSIRSLERASEIGAYGSEFDVHLTADNVLVVYHDNDIQGKHIQSCTYDELKDLQLSNGEKLPTLEQYLKRAKKLKNIR 99 (238)
T ss_dssp CTTSHHHHHHHHHTTCSEEEEEEEECTTSCEEECSSSEETTEEGGGSCHHHHTTCBCTTSCBCCBHHHHHHHHHHCTTCE
T ss_pred CccHHHHHHHHHHcCCCEEEEEeeEccCCcEEEECCCCCCCCChHhCCHHHHhhCCCCCCCcCCcHHHHHHHHhhcCCce
Confidence 3454567888899999999999995 678899999741 0 0000000 0000124667777777788777
Q ss_pred EEEEEecc
Q 040409 172 VTIFIEDY 179 (417)
Q Consensus 172 V~L~~edy 179 (417)
+.|.++..
T Consensus 100 l~iEiK~~ 107 (238)
T 3no3_A 100 LIFELKSH 107 (238)
T ss_dssp EEEEECCC
T ss_pred EEEEeCCC
Confidence 88888864
No 10
>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A*
Probab=60.19 E-value=39 Score=31.17 Aligned_cols=36 Identities=11% Similarity=0.109 Sum_probs=29.3
Q ss_pred CCCCCcCHHHHHHcccceeeeeeee-cCCcEEEEecC
Q 040409 105 PRNQEDTVTNQLNNGVRGFMLDMYD-FNNDIWLCHST 140 (417)
Q Consensus 105 ~~nQ~~sIt~QL~~GVR~LdLrv~~-~~~~l~lcH~~ 140 (417)
..|=-.++..-++.|++++++||+. .+|.+.+.|..
T Consensus 16 pENTl~af~~A~~~G~d~iE~DV~lT~Dg~~Vv~HD~ 52 (250)
T 3ks6_A 16 GDSTPHGFTATAAMALEEVEFDLHPTADGAIVVHHDP 52 (250)
T ss_dssp CTTCHHHHHHHHTSSSSEEEEEEEECTTSCEEECSSS
T ss_pred CcchHHHHHHHHHcCCCEEEEEEeEccCCCEEEECCC
Confidence 3444567788889999999999995 68889999974
No 11
>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis}
Probab=55.87 E-value=86 Score=28.72 Aligned_cols=37 Identities=19% Similarity=0.299 Sum_probs=30.4
Q ss_pred cCCCCCcCHHHHHHcccceeeeeeee-cCCcEEEEecC
Q 040409 104 SPRNQEDTVTNQLNNGVRGFMLDMYD-FNNDIWLCHST 140 (417)
Q Consensus 104 ~~~nQ~~sIt~QL~~GVR~LdLrv~~-~~~~l~lcH~~ 140 (417)
+..|=-.++..-++.|+.++++||+- .+|.+.+.|..
T Consensus 24 ~PENTl~Af~~A~~~Gad~iE~DV~lTkDG~lVv~HD~ 61 (252)
T 2pz0_A 24 VPENTIAAFKRAMELGADGIELDVQLTKDGHLVVIHDE 61 (252)
T ss_dssp SCTTSHHHHHHHHHHTCSEEEEEEEECTTCCEEECSSS
T ss_pred CCcchHHHHHHHHHcCCCEEEEEEEEecCCeEEEEcCC
Confidence 34555667888899999999999995 68899999974
No 12
>3rlg_A Sphingomyelin phosphodiesterase D lisictox-alphai; TIM beta/alpha-barrel, PLC-like phosphodiesterase, inactive H12A phospholipase D; HET: PGE; 1.60A {Loxosceles intermedia} PDB: 3rlh_A*
Probab=54.89 E-value=19 Score=35.29 Aligned_cols=68 Identities=13% Similarity=0.174 Sum_probs=45.3
Q ss_pred CCCcCHHHHHHcccceeeeeeee-cCCc-EEEEecCCCccccc---cCcccHHHHHHHHHHHHh----cCCCcEEEEEE
Q 040409 107 NQEDTVTNQLNNGVRGFMLDMYD-FNND-IWLCHSTGGRCFNF---TAFQPAINVLREIQTFLQ----ANPSEIVTIFI 176 (417)
Q Consensus 107 nQ~~sIt~QL~~GVR~LdLrv~~-~~~~-l~lcH~~~g~C~l~---~~~~~l~dvL~eI~~FL~----~nP~EVV~L~~ 176 (417)
|=-..|.+-++.|+..+++||.. .++. ++++||. .|..+ .....+.+.|++|++=-. .++++.++|.|
T Consensus 37 NTl~~~~~a~~~GAn~IE~DV~~~~dg~~v~~hhg~--pcdc~r~C~~~~~~~~~l~~lr~~ttpg~~k~~~~l~lv~~ 113 (302)
T 3rlg_A 37 NAIGQIDEFVNLGANSIETDVSFDDNANPEYTYHGI--PCDCGRNCKKYENFNDFLKGLRSATTPGNSKYQEKLVLVVF 113 (302)
T ss_dssp CSHHHHHHHHHTTCSEEEEEECBCTTSCBCBCCCCS--SCCTTCCSCCCCBHHHHHHHHHHHHSTTSTTCCTTCCEEEE
T ss_pred hhHHHHHHHHHcCCCEEEEEEEECCCCCEEEEECCC--CcchhccCCCCccHHHHHHHHHHhcCCCCCccccceEEEEE
Confidence 33456778888999999999985 4554 5556664 34332 123578899999988775 34556655444
No 13
>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria}
Probab=54.86 E-value=60 Score=29.82 Aligned_cols=111 Identities=12% Similarity=0.003 Sum_probs=62.9
Q ss_pred CCCCCcCHHHHHHcccceeeeeeee-cCCcEEEEecC---CCc-ccccc---CcccHHH-------------HHHHHHHH
Q 040409 105 PRNQEDTVTNQLNNGVRGFMLDMYD-FNNDIWLCHST---GGR-CFNFT---AFQPAIN-------------VLREIQTF 163 (417)
Q Consensus 105 ~~nQ~~sIt~QL~~GVR~LdLrv~~-~~~~l~lcH~~---~g~-C~l~~---~~~~l~d-------------vL~eI~~F 163 (417)
..|=-.++..-++.|+.++++||+. .+|.+.+.|.. .-. +.... .-.++.+ .|+|+.++
T Consensus 22 PENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~~~~l~Rtt~~~g~v~~~t~~eL~~l~~~~~~~iptL~evl~~ 101 (258)
T 2o55_A 22 PENTLRSFVLCMERNIPYIETDLRVCKTGEIVLFHGTPEGTIPFYKDGTSRIGDLSLEELKRLDVGGGHTIPSLEELFVA 101 (258)
T ss_dssp CTTCHHHHHHHHHTTCCEEEEEEEECTTSCEEECCCSTTSBCTTSTTTTCBGGGSCHHHHTTCBSSSSCBCCBHHHHHHH
T ss_pred CccHHHHHHHHHHcCcCEEEEEEEEecCCeEEEEeCCCCccceeeCCCCeehhhCcHHHHhhcCCCCCCccCCHHHHHHH
Confidence 3444467788889999999999995 67889999985 100 00000 0011222 45666677
Q ss_pred HhcCC-CcEEEEEEecccC---Cc---hhHHHHHHhcCCCCeeecCCCCCCCCCCCCcHHHHHhc
Q 040409 164 LQANP-SEIVTIFIEDYVT---SS---QGLTKVFKASGLSNYMFPVSKMPKNGGDWPIVDDMVKQ 221 (417)
Q Consensus 164 L~~nP-~EVV~L~~edy~~---~~---~~l~~~f~~~GL~~~l~pps~~~~~~~~wPTL~emi~~ 221 (417)
+..+| +=.+.|.++.... .+ ..+.++++..|+.+.++-- .-++..|..+++.
T Consensus 102 ~~~~~~~~~l~iEiK~~~~~~~~~~~~~~v~~~l~~~~~~~~v~i~------Sf~~~~l~~~~~~ 160 (258)
T 2o55_A 102 IEEQKFNLKLNLELKGEEWKRKESGDHQRLLLLVEKYHMQERVDYC------SFHHEALAHLKAL 160 (258)
T ss_dssp HHHSCSCCEEEEEECCSSSSSTTSSHHHHHHHHHHTTTCGGGEEEE------ESSHHHHHHHHHH
T ss_pred hhhhcCceEEEEEEccCCccccchHHHHHHHHHHHHcCCCCCEEEE------eCCHHHHHHHHHH
Confidence 77776 4457788875321 11 2345555555654443321 1234567777653
No 14
>1xx1_A Smase I, sphingomyelinase I; structure, quick cryo-soaking, activity, smase D, hydrolase; HET: EPE; 1.75A {Loxosceles laeta} PDB: 2f9r_A*
Probab=47.19 E-value=29 Score=32.43 Aligned_cols=69 Identities=9% Similarity=0.051 Sum_probs=45.4
Q ss_pred cCHHHHHHcccceeeeeeeecCCcEEEEecCCCcccc---ccCcccHHHHHHHHHHHHh-cCC---C--cEEEEEEecc
Q 040409 110 DTVTNQLNNGVRGFMLDMYDFNNDIWLCHSTGGRCFN---FTAFQPAINVLREIQTFLQ-ANP---S--EIVTIFIEDY 179 (417)
Q Consensus 110 ~sIt~QL~~GVR~LdLrv~~~~~~l~lcH~~~g~C~l---~~~~~~l~dvL~eI~~FL~-~nP---~--EVV~L~~edy 179 (417)
.++..-++.|+.++++||+..+|.+.+.|... .|.+ -++.+.+.+.|.||++.-. .+| + +.+.|.+++.
T Consensus 18 ~Af~~A~~~Gad~IE~DV~lkDG~lVv~HD~~-~~~l~Rtt~~~g~v~d~l~eL~~l~~~~~~~~~~~L~~l~iEiK~~ 95 (285)
T 1xx1_A 18 AQIPDFLDLGANALEADVTFKGSVPTYTYHGT-PCDFGRDCIRWEYFNVFLKTLREYTTPGNAKYRDGFILFVLDLKTG 95 (285)
T ss_dssp THHHHHHHHTCSEEEEEEEEETTEEEEEECCS-SCCTTSCSCCEEEHHHHHHHHHHHTSTTCTTCCTTCCEEEEEECCT
T ss_pred HHHHHHHHhCCCEEEEEEEEECCEEEEEcCCc-ccccccccCCCccHHHHHHHHHHcccCCCCcccccccEEEEecCCC
Confidence 35667788999999999988667889999741 1111 1223578888999988632 111 2 2566777753
No 15
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=47.12 E-value=21 Score=30.22 Aligned_cols=32 Identities=25% Similarity=0.354 Sum_probs=26.6
Q ss_pred ccCcccHHHHHHHHHHHHhcCCCcEEEEEEecc
Q 040409 147 FTAFQPAINVLREIQTFLQANPSEIVTIFIEDY 179 (417)
Q Consensus 147 ~~~~~~l~dvL~eI~~FL~~nP~EVV~L~~edy 179 (417)
|+. ....+||.||.+-+++||+|-|-|.==|.
T Consensus 61 f~~-~d~~~Vl~Ele~C~k~~p~~yVRliGfD~ 92 (118)
T 3zxw_B 61 FNC-TNAQDVLNEVQQCRSEYPNCFIRVVAFDN 92 (118)
T ss_dssp TTC-CCHHHHHHHHHHHHHHCTTSEEEEEEEET
T ss_pred cCC-CCHHHHHHHHHHHHHHCCCceEEEEEEeC
Confidence 444 67899999999999999999998865443
No 16
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=46.45 E-value=23 Score=29.65 Aligned_cols=31 Identities=16% Similarity=0.147 Sum_probs=25.9
Q ss_pred ccCcccHHHHHHHHHHHHhcCCCcEEEEEEec
Q 040409 147 FTAFQPAINVLREIQTFLQANPSEIVTIFIED 178 (417)
Q Consensus 147 ~~~~~~l~dvL~eI~~FL~~nP~EVV~L~~ed 178 (417)
|+. ....++|.||.+-+++||+|-|-|.==|
T Consensus 62 f~~-~d~~~Vl~Ele~C~k~~p~~yVRligfD 92 (109)
T 1rbl_M 62 FAC-AAPQQVLDEVRECRSEYGDCYIRVAGFD 92 (109)
T ss_dssp TTC-CCHHHHHHHHHHHHHHCTTSEEEEEEEE
T ss_pred cCC-CCHHHHHHHHHHHHHHCCCCeEEEEEEe
Confidence 444 6789999999999999999999876544
No 17
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=46.20 E-value=22 Score=29.72 Aligned_cols=31 Identities=35% Similarity=0.409 Sum_probs=25.9
Q ss_pred ccCcccHHHHHHHHHHHHhcCCCcEEEEEEec
Q 040409 147 FTAFQPAINVLREIQTFLQANPSEIVTIFIED 178 (417)
Q Consensus 147 ~~~~~~l~dvL~eI~~FL~~nP~EVV~L~~ed 178 (417)
|+. ....++|.||.+-+++||+|-|-|.==|
T Consensus 64 f~~-~d~~~Vl~El~~C~k~~p~~yVRligfD 94 (110)
T 1svd_M 64 FGE-QNVDNVLAEIEACRSAYPTHQVKLVAYD 94 (110)
T ss_dssp TTC-CCHHHHHHHHHHHHHHSTTSEEEEEEEE
T ss_pred cCC-CCHHHHHHHHHHHHHHCCCCeEEEEEEe
Confidence 444 6789999999999999999999876444
No 18
>1gk8_I Ribulose bisphosphate carboxylase small chain 1; lyase, rubisco, photosynthesis; HET: KCX CAP; 1.4A {Chlamydomonas reinhardtii} SCOP: d.73.1.1 PDB: 2v63_I* 2v67_I* 2v68_I* 2v69_I* 2v6a_I* 2vdh_I* 2vdi_I* 1uw9_C* 1uwa_C* 1ir2_I* 1uzd_C* 1uzh_C*
Probab=44.05 E-value=26 Score=30.56 Aligned_cols=28 Identities=32% Similarity=0.421 Sum_probs=24.4
Q ss_pred ccHHHHHHHHHHHHhcCCCcEEEEEEec
Q 040409 151 QPAINVLREIQTFLQANPSEIVTIFIED 178 (417)
Q Consensus 151 ~~l~dvL~eI~~FL~~nP~EVV~L~~ed 178 (417)
....++|.||.+-+++||+|-|-|.==|
T Consensus 84 td~~qVl~El~~C~k~~P~~YVRligfD 111 (140)
T 1gk8_I 84 RDPMQVLREIVACTKAFPDAYVRLVAFD 111 (140)
T ss_dssp CCHHHHHHHHHHHHHHCTTSEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEEEEEe
Confidence 5789999999999999999999876444
No 19
>1h59_B Insulin-like growth factor binding protein 5; IGF binding protein; 2.1A {Homo sapiens} SCOP: g.3.9.1 PDB: 1boe_A
Probab=42.00 E-value=8.5 Score=28.34 Aligned_cols=25 Identities=28% Similarity=0.635 Sum_probs=20.3
Q ss_pred cccccccccCCCCCCCCCCCCcCCCC
Q 040409 26 SLKIGETCSGSSNSACDAGLTCQTCP 51 (417)
Q Consensus 26 ~~~~~~~c~~~~~~~c~~g~~c~~c~ 51 (417)
++..|+.|--- ..+|++||+|..=+
T Consensus 2 Al~~G~~CGVy-T~rC~~GLRC~p~p 26 (54)
T 1h59_B 2 ALAEGQSCGVY-TERCAQGLRCLPRQ 26 (54)
T ss_dssp CBCTTCEECTT-SCCBCTTCEEECCT
T ss_pred cccCCCcCeee-cccccCCccccCCC
Confidence 57889999765 67999999997643
No 20
>1bwv_S Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco-reaction intermedi high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} SCOP: d.73.1.1 PDB: 1iwa_B
Probab=41.89 E-value=28 Score=30.27 Aligned_cols=32 Identities=19% Similarity=0.139 Sum_probs=26.5
Q ss_pred ccCcccHHHHHHHHHHHHhcCCCcEEEEEEecc
Q 040409 147 FTAFQPAINVLREIQTFLQANPSEIVTIFIEDY 179 (417)
Q Consensus 147 ~~~~~~l~dvL~eI~~FL~~nP~EVV~L~~edy 179 (417)
|+. ....+||.||.+-+++||+|-|-|.==|.
T Consensus 56 F~~-td~~~Vl~Ele~C~k~~p~~YVRliGfD~ 87 (138)
T 1bwv_S 56 FDV-TDPAAVLFEINACRKARSNFYIKVVGFSS 87 (138)
T ss_dssp CSC-CCHHHHHHHHHHHHHHCTTSEEEEEEEEC
T ss_pred cCC-CCHHHHHHHHHHHHHHCCCCeEEEEEEeC
Confidence 444 67899999999999999999998765453
No 21
>1bxn_I Rubisco, protein (ribulose bisphosphate carboxylase small; lyase (carbon-carbon), lyase; 2.70A {Cupriavidus necator} SCOP: d.73.1.1
Probab=41.23 E-value=28 Score=30.29 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=26.6
Q ss_pred ccCcccHHHHHHHHHHHHhcCCCcEEEEEEecc
Q 040409 147 FTAFQPAINVLREIQTFLQANPSEIVTIFIEDY 179 (417)
Q Consensus 147 ~~~~~~l~dvL~eI~~FL~~nP~EVV~L~~edy 179 (417)
|+. ....+||.||.+-+++||+|-|-|.==|.
T Consensus 56 F~~-td~~~Vl~Ele~C~k~~p~~YVRliGfD~ 87 (139)
T 1bxn_I 56 FDL-RDAAGILMEINNARNTFPNHYIRVTAFDS 87 (139)
T ss_dssp TTC-CCHHHHHHHHHHHHHHCSSSEEEEEEECT
T ss_pred cCC-CCHHHHHHHHHHHHHHCCCCeEEEEEEeC
Confidence 444 67899999999999999999998865553
No 22
>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A
Probab=39.85 E-value=82 Score=28.29 Aligned_cols=71 Identities=18% Similarity=0.343 Sum_probs=45.0
Q ss_pred CCCCCcCHHHHHHcccceeeeeeee-cCCcEEEEecCC---CccccccCcccHHH---------HHHHHHHHHhcCCCcE
Q 040409 105 PRNQEDTVTNQLNNGVRGFMLDMYD-FNNDIWLCHSTG---GRCFNFTAFQPAIN---------VLREIQTFLQANPSEI 171 (417)
Q Consensus 105 ~~nQ~~sIt~QL~~GVR~LdLrv~~-~~~~l~lcH~~~---g~C~l~~~~~~l~d---------vL~eI~~FL~~nP~EV 171 (417)
..|=-.++..-++.|+.++++||+- .+|.+.+.|... |.-.. .++.+ .|+|+.+++....+-.
T Consensus 21 PENTl~Af~~A~~~G~d~iE~DV~lT~Dg~lVv~HD~~l~~g~v~~----~t~~eL~~l~~~iptL~evl~~~~~~~~~~ 96 (224)
T 1vd6_A 21 KENTLESFRLALEAGLDGVELDVWPTRDGVFAVRHDPDTPLGPVFQ----VDYADLKAQEPDLPRLEEVLALKEAFPQAV 96 (224)
T ss_dssp CTTSHHHHHHHHHTTCSEEEEEEEECTTSCEEECSCSEETTEEGGG----SCHHHHHHHSTTCCBHHHHHGGGGTCTTCE
T ss_pred CcchHHHHHHHHHcCCCEEEEEeeEecCCcEEEECCCccCCCChhh----CCHHHHHhcCCCCCCHHHHHHhhhccCCce
Confidence 4555567888899999999999995 578899999841 11100 22333 2555555555333445
Q ss_pred EEEEEecc
Q 040409 172 VTIFIEDY 179 (417)
Q Consensus 172 V~L~~edy 179 (417)
+.|.++..
T Consensus 97 l~iEiK~~ 104 (224)
T 1vd6_A 97 FNVELKSF 104 (224)
T ss_dssp EEEEECCC
T ss_pred EEEEECCC
Confidence 67777753
No 23
>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.84 E-value=12 Score=25.42 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=19.7
Q ss_pred cccHHHHHHHHHHHHhcCCCcE
Q 040409 150 FQPAINVLREIQTFLQANPSEI 171 (417)
Q Consensus 150 ~~~l~dvL~eI~~FL~~nP~EV 171 (417)
+..+-+-|++|++|=+++|+|+
T Consensus 12 f~~FY~rlk~Ike~Hrr~P~~~ 33 (38)
T 2dt7_A 12 FAEFYNRLKQIKEFHRKHPNEI 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHHHHHHhCCCcc
Confidence 3578899999999999999997
No 24
>4f0h_B Ribulose bisphosphate carboxylase small chain; alpha beta domain, catalytic domain TIM barrel, carboxylase/oxygenase, nitrosylation; 1.96A {Galdieria sulphuraria} PDB: 4f0k_B 4f0m_B 1iwa_B 1bwv_S*
Probab=36.61 E-value=38 Score=29.45 Aligned_cols=31 Identities=19% Similarity=0.162 Sum_probs=26.1
Q ss_pred ccCcccHHHHHHHHHHHHhcCCCcEEEEEEec
Q 040409 147 FTAFQPAINVLREIQTFLQANPSEIVTIFIED 178 (417)
Q Consensus 147 ~~~~~~l~dvL~eI~~FL~~nP~EVV~L~~ed 178 (417)
|+. ....+||.||.+-+++||+|-|-|.==|
T Consensus 56 Fg~-~d~~~Vl~Ele~C~k~~p~~YVRliGfD 86 (138)
T 4f0h_B 56 FEV-TDPAPVLFEINACRKAKSNFYIKVVGFS 86 (138)
T ss_dssp CSC-CSHHHHHHHHHHHHHHTTTSEEEEEEEE
T ss_pred cCC-CCHHHHHHHHHHHHHHCCCCeEEEEEEe
Confidence 444 6789999999999999999999876544
No 25
>1wdd_S Ribulose bisphosphate carboxylase small chain C; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: d.73.1.1 PDB: 3axm_S* 3axk_S* 8ruc_I* 1aus_S 1rbo_S* 1rco_S* 1rcx_S* 1rxo_S* 1upm_C* 1upp_I* 1aa1_S* 3rub_S 1rlc_S* 1rld_S 1ej7_S 1ir1_S* 4rub_S*
Probab=35.82 E-value=40 Score=28.93 Aligned_cols=31 Identities=32% Similarity=0.410 Sum_probs=25.7
Q ss_pred ccCcccHHHHHHHHHHHHhcCCCcEEEEEEec
Q 040409 147 FTAFQPAINVLREIQTFLQANPSEIVTIFIED 178 (417)
Q Consensus 147 ~~~~~~l~dvL~eI~~FL~~nP~EVV~L~~ed 178 (417)
|+. ....+||.||.+-+++||++-|-|.==|
T Consensus 74 Fg~-td~~~Vl~El~~C~k~~P~~YVRligfD 104 (128)
T 1wdd_S 74 FGC-TDATQVLKELEEAKKAYPDAFVRIIGFD 104 (128)
T ss_dssp TTC-CCHHHHHHHHHHHHHHCTTSEEEEEEEE
T ss_pred ccC-CCHHHHHHHHHHHHHHCCCCeEEEEEEe
Confidence 444 6789999999999999999998876444
No 26
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2
Probab=24.81 E-value=41 Score=29.98 Aligned_cols=35 Identities=3% Similarity=0.231 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhcCC--CcEEEEEEecccCCchhHHHHH
Q 040409 154 INVLREIQTFLQANP--SEIVTIFIEDYVTSSQGLTKVF 190 (417)
Q Consensus 154 ~dvL~eI~~FL~~nP--~EVV~L~~edy~~~~~~l~~~f 190 (417)
.-.+++|++||++|| .||+++.+++. +.+.+.+.|
T Consensus 135 ~i~~~~v~~~l~~~~~~~~V~~v~~~~~--~~~~~~~~l 171 (184)
T 1spv_A 135 EIAVKTVSEFITRHALPEQVYFVCYDEE--NAHLYERLL 171 (184)
T ss_dssp HHHHHHHHHHHHHCCSSSEEEEEESSHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEECCHH--HHHHHHHHH
Confidence 346778999999987 67777777542 234566666
No 27
>2jtk_A Dickkopf-related protein 2; domain, developmental protein, glycoprotein, secreted, WNT signaling pathway, signaling protein; NMR {Mus musculus}
Probab=24.25 E-value=25 Score=28.46 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=19.9
Q ss_pred cccccccccCCCCCCCCCCCCcCCCC
Q 040409 26 SLKIGETCSGSSNSACDAGLTCQTCP 51 (417)
Q Consensus 26 ~~~~~~~c~~~~~~~c~~g~~c~~c~ 51 (417)
.-++|+.|.. +.||++|+=|..-.
T Consensus 7 ~g~~G~~C~~--~~dC~~G~CCA~~~ 30 (90)
T 2jtk_A 7 KGHEGDPCLR--SSDCIDGFCCARHF 30 (90)
T ss_dssp CCSSSCBCCS--SCCSCTTEEEECCS
T ss_pred CCCcCCcccC--cCCCCCcceeCccC
Confidence 4579999998 59999999997743
No 28
>2k7r_A Primosomal protein DNAI; DNAI N-terminal domain, helicase-loading protein, ATP- binding, DNA replication, nucleotide-binding, primosome; NMR {Bacillus subtilis}
Probab=23.27 E-value=27 Score=28.43 Aligned_cols=13 Identities=38% Similarity=0.698 Sum_probs=11.3
Q ss_pred HHHHHHhcCCCcE
Q 040409 159 EIQTFLQANPSEI 171 (417)
Q Consensus 159 eI~~FL~~nP~EV 171 (417)
+|++||++||+|+
T Consensus 33 ~V~~Fl~~h~~~l 45 (106)
T 2k7r_A 33 DVQAFLKENEEVI 45 (106)
T ss_dssp HHHHHHHHSTTTC
T ss_pred HHHHHHHHChhhC
Confidence 5999999999775
No 29
>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri}
Probab=21.49 E-value=67 Score=29.26 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=29.6
Q ss_pred CCCCCcCHHHHHHcccceeeeeeee-cCCcEEEEecC
Q 040409 105 PRNQEDTVTNQLNNGVRGFMLDMYD-FNNDIWLCHST 140 (417)
Q Consensus 105 ~~nQ~~sIt~QL~~GVR~LdLrv~~-~~~~l~lcH~~ 140 (417)
..|=-.++..-++.|++++++||+. .+|.+.+.|..
T Consensus 20 PENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~ 56 (247)
T 2otd_A 20 PENTLAAIDVGAKYGHKMIEFDAKLSKDGEIFLLHDD 56 (247)
T ss_dssp CSSSHHHHHHHHHTTCSEEEEEEEECTTCCEEECSSS
T ss_pred CchhHHHHHHHHHcCCCEEEEEeeEccCCcEEEECCC
Confidence 4555567888899999999999995 57889999974
No 30
>1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3
Probab=21.34 E-value=68 Score=29.41 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=29.7
Q ss_pred CCCCCcCHHHHHHcccceeeeeeee-cCCcEEEEecC
Q 040409 105 PRNQEDTVTNQLNNGVRGFMLDMYD-FNNDIWLCHST 140 (417)
Q Consensus 105 ~~nQ~~sIt~QL~~GVR~LdLrv~~-~~~~l~lcH~~ 140 (417)
..|=-.++..-++.|+.++++||+. .+|.+.+.|..
T Consensus 15 PENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~ 51 (248)
T 1zcc_A 15 PENTFAAADLALQQGADYIELDVRESADGVLYVIHDE 51 (248)
T ss_dssp CSSSHHHHHHHHHTTCSEEEEEEEECTTCCEEECSSS
T ss_pred CchHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEECCC
Confidence 4455567888899999999999995 57899999974
No 31
>1o1z_A GDPD, glycerophosphodiester phosphodiesterase; TM1621, glycerophosphodiester phosphodiesterase (GDPD), STRU genomics, JCSG, PSI; 1.60A {Thermotoga maritima} SCOP: c.1.18.3
Probab=20.54 E-value=70 Score=29.12 Aligned_cols=37 Identities=16% Similarity=0.261 Sum_probs=30.7
Q ss_pred cCCCCCcCHHHHHHcccceeeeeeee-cCCcEEEEecC
Q 040409 104 SPRNQEDTVTNQLNNGVRGFMLDMYD-FNNDIWLCHST 140 (417)
Q Consensus 104 ~~~nQ~~sIt~QL~~GVR~LdLrv~~-~~~~l~lcH~~ 140 (417)
+..|=-.++..-++.|+.++++||+. .+|.+.+.|..
T Consensus 25 ~PENTl~Af~~A~~~Gad~iE~DV~lTkDG~lVv~HD~ 62 (234)
T 1o1z_A 25 YLENTLEAFMKAIEAGANGVELDVRLSKDGKVVVSHDE 62 (234)
T ss_dssp SCTTSHHHHHHHHHTTCSEEEEEEEECTTSCEEECSSS
T ss_pred CCCchHHHHHHHHHcCCCEEEEEeeEecCCCEEEEcCC
Confidence 44566678888999999999999995 67889999974
Done!