BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040410
(171 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 7/132 (5%)
Query: 4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDF 62
Q K + LQ +TG++P N L LS N SG +P+S+G+L L++L
Sbjct: 387 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 446
Query: 63 LFNKLSSE------FSCSLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLAS 116
N L E + +L+ L L + ++P ++N L W L N+ +GE+
Sbjct: 447 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 506
Query: 117 TKNLKSLEVLAI 128
L++L +L +
Sbjct: 507 IGRLENLAILKL 518
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 60/121 (49%), Gaps = 11/121 (9%)
Query: 19 HYTGELPFLSG-NLRSLKE-DLSKNNSSGELPTSIGNL-FPLKELDFLFNKLSSEF---- 71
+++GELP + +R LK DLS N SGELP S+ NL L LD N S
Sbjct: 326 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 385
Query: 72 ----SCSLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLA 127
+L+ L+L + F K+P +++N + L L FN SG + +S +L L L
Sbjct: 386 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 445
Query: 128 I 128
+
Sbjct: 446 L 446
Score = 30.8 bits (68), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 41 NNSSGELPTSIGNLFPLKELDFLFNKLSSEFSCSLKRLF------LVSCNFWEKVPHSIN 94
N+ +GE+P+ + N L + N+L+ E + RL L + +F +P +
Sbjct: 473 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 532
Query: 95 NFARLQWYDLVFNKFSGELLAS 116
+ L W DL N F+G + A+
Sbjct: 533 DCRSLIWLDLNTNLFNGTIPAA 554
Score = 29.6 bits (65), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 13 VRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEF 71
+ L +G +P G+LR L DLS N G +P ++ L L E+D N LS
Sbjct: 658 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 717
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 24/92 (26%)
Query: 22 GELPFLSGNLRSLKEDLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSCSLKRLFLV 81
G +P+L +L N+ SG +P +G+L L LD NKL
Sbjct: 650 GSMPYL------FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG------------ 691
Query: 82 SCNFWEKVPHSINNFARLQWYDLVFNKFSGEL 113
++P +++ L DL N SG +
Sbjct: 692 ------RIPQAMSALTMLTEIDLSNNNLSGPI 717
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 70/175 (40%), Gaps = 56/175 (32%)
Query: 3 DQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNL------- 54
D ++ ++ + + +++ +PFL G+ +L+ D+S N SG+ +I
Sbjct: 192 DVSRCVNLEFLDVSSNNFSTGIPFL-GDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 250
Query: 55 ------------FPLKELDFLF---NKLSSEF------SC-SLKRLFLVSCNFWEKVP-- 90
PLK L +L NK + E +C +L L L +F+ VP
Sbjct: 251 ISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF 310
Query: 91 -----------HSINNFA------------RLQWYDLVFNKFSGELLASTKNLKS 122
S NNF+ L+ DL FN+FSGEL S NL +
Sbjct: 311 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 365
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 12 YVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDF---LFN 65
++ L TGE+P G L +L LS N+ SG +P +G+ L LD LFN
Sbjct: 491 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 548
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 7/132 (5%)
Query: 4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDF 62
Q K + LQ +TG++P N L LS N SG +P+S+G+L L++L
Sbjct: 390 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449
Query: 63 LFNKLSSE------FSCSLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLAS 116
N L E + +L+ L L + ++P ++N L W L N+ +GE+
Sbjct: 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509
Query: 117 TKNLKSLEVLAI 128
L++L +L +
Sbjct: 510 IGRLENLAILKL 521
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 60/121 (49%), Gaps = 11/121 (9%)
Query: 19 HYTGELPFLSG-NLRSLKE-DLSKNNSSGELPTSIGNL-FPLKELDFLFNKLSSEF---- 71
+++GELP + +R LK DLS N SGELP S+ NL L LD N S
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388
Query: 72 ----SCSLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLA 127
+L+ L+L + F K+P +++N + L L FN SG + +S +L L L
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448
Query: 128 I 128
+
Sbjct: 449 L 449
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 41 NNSSGELPTSIGNLFPLKELDFLFNKLSSEFSCSLKRLF------LVSCNFWEKVPHSIN 94
N+ +GE+P+ + N L + N+L+ E + RL L + +F +P +
Sbjct: 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535
Query: 95 NFARLQWYDLVFNKFSGELLAS 116
+ L W DL N F+G + A+
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAA 557
Score = 29.6 bits (65), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 13 VRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEF 71
+ L +G +P G+LR L DLS N G +P ++ L L E+D N LS
Sbjct: 661 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 24/92 (26%)
Query: 22 GELPFLSGNLRSLKEDLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSCSLKRLFLV 81
G +P+L +L N+ SG +P +G+L L LD NKL
Sbjct: 653 GSMPYL------FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG------------ 694
Query: 82 SCNFWEKVPHSINNFARLQWYDLVFNKFSGEL 113
++P +++ L DL N SG +
Sbjct: 695 ------RIPQAMSALTMLTEIDLSNNNLSGPI 720
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 70/175 (40%), Gaps = 56/175 (32%)
Query: 3 DQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNL------- 54
D ++ ++ + + +++ +PFL G+ +L+ D+S N SG+ +I
Sbjct: 195 DVSRCVNLEFLDVSSNNFSTGIPFL-GDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253
Query: 55 ------------FPLKELDFLF---NKLSSEF------SC-SLKRLFLVSCNFWEKVP-- 90
PLK L +L NK + E +C +L L L +F+ VP
Sbjct: 254 ISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF 313
Query: 91 -----------HSINNFA------------RLQWYDLVFNKFSGELLASTKNLKS 122
S NNF+ L+ DL FN+FSGEL S NL +
Sbjct: 314 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 368
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 12 YVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDF---LFN 65
++ L TGE+P G L +L LS N+ SG +P +G+ L LD LFN
Sbjct: 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551
>pdb|3JU5|A Chain A, Crystal Structure Of Dimeric Arginine Kinase At 1.75-A
Resolution
pdb|3JU5|B Chain B, Crystal Structure Of Dimeric Arginine Kinase At 1.75-A
Resolution
pdb|3JU5|C Chain C, Crystal Structure Of Dimeric Arginine Kinase At 1.75-A
Resolution
pdb|3JU5|D Chain D, Crystal Structure Of Dimeric Arginine Kinase At 1.75-A
Resolution
pdb|3JU6|A Chain A, Crystal Structure Of Dimeric Arginine Kinase In Complex
With Amppnp And Arginine
pdb|3JU6|B Chain B, Crystal Structure Of Dimeric Arginine Kinase In Complex
With Amppnp And Arginine
pdb|3JU6|C Chain C, Crystal Structure Of Dimeric Arginine Kinase In Complex
With Amppnp And Arginine
pdb|3JU6|D Chain D, Crystal Structure Of Dimeric Arginine Kinase In Complex
With Amppnp And Arginine
Length = 370
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 35 KEDLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSCSLK 76
K L K +SGE S+G ++ + LD L + + +C +K
Sbjct: 305 KXRLQKRGTSGEFTESVGGVYDISNLDRLGSSEVEQVNCVIK 346
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 42 NSSGELPTSIGNLFPLKELDFLFNKLSS---EF-SCSLKRLFLVSCNFWEKVPHSINNFA 97
NS ELP I NL L+ LD N+L+S E SC + F N +P N
Sbjct: 257 NSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLC 316
Query: 98 RLQWYDLVFNKFSGELL 114
LQ+ + N + L
Sbjct: 317 NLQFLGVEGNPLEKQFL 333
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 10/113 (8%)
Query: 2 SDQAKKKQHTYVRLQAKH--YTG--ELPFLSGNLRSLKEDLSKNNSSGELPTSIGNLFPL 57
S A + V LQ+ +TG LP NL++LK +N+ L +I +L L
Sbjct: 172 STDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKL 231
Query: 58 KELDFLFNKLSSEFS------CSLKRLFLVSCNFWEKVPHSINNFARLQWYDL 104
+ELD + LKRL L C+ +P I+ +L+ DL
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284
>pdb|3DGC|L Chain L, Structure Of Il-22IL-22r1
pdb|3DGC|M Chain M, Structure Of Il-22IL-22r1
Length = 141
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 14 RLQAKHYTGELPFLSGNLRSLKEDLSKNNSSGELPTSIGNLFPLKELDFLFNKL 67
RL H G+ + N++ LK+ + K SGE+ +IG ELD LF L
Sbjct: 90 RLSTCHIEGDDLHIQRNVQKLKDTVKKLGESGEI-KAIG------ELDLLFMSL 136
>pdb|3Q1S|I Chain I, Hiv-1 Neutralizing Antibody Z13e1 In Complex With Epitope
Display Protein
Length = 151
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 14 RLQAKHYTGELPFLSGNLRSLKEDLSKNNSSGELPTSIGNLFPLKELDFLFNKL 67
RL H G+ + N++ LK+ + K SGE+ +IG ELD LF L
Sbjct: 100 RLSTCHIEGDDLHIQRNVQKLKDTVKKLGESGEI-KAIG------ELDLLFMSL 146
>pdb|1YKB|A Chain A, Crystal Structure Of Insect Cell Expressed Il-22
pdb|1YKB|B Chain B, Crystal Structure Of Insect Cell Expressed Il-22
pdb|1YKB|C Chain C, Crystal Structure Of Insect Cell Expressed Il-22
pdb|1YKB|D Chain D, Crystal Structure Of Insect Cell Expressed Il-22
pdb|1YKB|E Chain E, Crystal Structure Of Insect Cell Expressed Il-22
pdb|1YKB|F Chain F, Crystal Structure Of Insect Cell Expressed Il-22
Length = 142
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 14 RLQAKHYTGELPFLSGNLRSLKEDLSKNNSSGELPTSIGNLFPLKELDFLFNKL 67
RL H G+ + N++ LK+ + K SGE+ +IG ELD LF L
Sbjct: 91 RLSTCHIEGDDLHIQRNVQKLKDTVKKLGESGEI-KAIG------ELDLLFMSL 137
>pdb|3DUH|A Chain A, Structure Of Interleukin-23
pdb|3DUH|B Chain B, Structure Of Interleukin-23
Length = 314
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 1 MSDQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKEDLS 39
+ DQ + K T++R +AK+Y+G F L ++ DL+
Sbjct: 97 LKDQKEPKNKTFLRCEAKNYSGR--FTCWWLTTISTDLT 133
>pdb|1F45|A Chain A, Human Interleukin-12
pdb|1F42|A Chain A, The P40 Domain Of Human Interleukin-12
pdb|3HMX|A Chain A, Crystal Structure Of Ustekinumab FabIL-12 Complex
pdb|3QWR|A Chain A, Crystal Structure Of Il-23 In Complex With An Adnectin
Length = 306
Score = 26.2 bits (56), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 1 MSDQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKEDLS 39
+ DQ + K T++R +AK+Y+G F L ++ DL+
Sbjct: 95 LKDQKEPKNKTFLRCEAKNYSGR--FTCWWLTTISTDLT 131
>pdb|3D85|D Chain D, Crystal Structure Of Il-23 In Complex With Neutralizing
Fab
pdb|3D87|B Chain B, Crystal Structure Of Interleukin-23
pdb|3D87|D Chain D, Crystal Structure Of Interleukin-23
Length = 306
Score = 26.2 bits (56), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 1 MSDQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKEDLS 39
+ DQ + K T++R +AK+Y+G F L ++ DL+
Sbjct: 95 LKDQKEPKNKTFLRCEAKNYSGR--FTCWWLTTISTDLT 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,150,507
Number of Sequences: 62578
Number of extensions: 140316
Number of successful extensions: 362
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 307
Number of HSP's gapped (non-prelim): 55
length of query: 171
length of database: 14,973,337
effective HSP length: 92
effective length of query: 79
effective length of database: 9,216,161
effective search space: 728076719
effective search space used: 728076719
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)