Query 040410
Match_columns 171
No_of_seqs 115 out of 1376
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 08:08:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040410.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040410hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 5.7E-23 1.2E-27 171.2 10.1 157 7-163 139-302 (968)
2 PLN00113 leucine-rich repeat r 99.9 6.4E-23 1.4E-27 170.9 10.1 167 4-170 160-333 (968)
3 KOG0617 Ras suppressor protein 99.8 2.6E-22 5.7E-27 132.4 -2.8 161 2-168 27-195 (264)
4 KOG0617 Ras suppressor protein 99.8 2.8E-21 6.1E-26 127.6 -4.2 153 2-159 50-213 (264)
5 KOG4194 Membrane glycoprotein 99.7 3.5E-17 7.6E-22 125.5 3.2 165 4-168 265-439 (873)
6 KOG4194 Membrane glycoprotein 99.6 4.7E-17 1E-21 124.8 0.9 155 4-158 193-378 (873)
7 KOG0444 Cytoskeletal regulator 99.6 1.8E-17 4E-22 128.4 -2.0 162 3-169 98-291 (1255)
8 KOG0444 Cytoskeletal regulator 99.5 1.9E-16 4E-21 122.9 -2.9 146 7-156 196-373 (1255)
9 PLN03210 Resistant to P. syrin 99.5 3.3E-14 7E-19 120.6 9.8 148 4-154 653-834 (1153)
10 KOG0472 Leucine-rich repeat pr 99.5 1.2E-16 2.6E-21 117.8 -4.8 149 4-158 156-310 (565)
11 KOG0472 Leucine-rich repeat pr 99.5 1.3E-16 2.8E-21 117.6 -5.4 157 6-168 112-297 (565)
12 KOG0532 Leucine-rich repeat (L 99.5 9.6E-16 2.1E-20 117.2 -3.5 156 7-170 74-235 (722)
13 KOG0618 Serine/threonine phosp 99.5 1.4E-14 2.9E-19 116.0 2.6 149 5-157 307-488 (1081)
14 cd00116 LRR_RI Leucine-rich re 99.5 8.6E-15 1.9E-19 108.2 1.3 155 4-158 77-263 (319)
15 PLN03210 Resistant to P. syrin 99.5 3.8E-13 8.3E-18 114.2 10.9 157 4-165 630-822 (1153)
16 cd00116 LRR_RI Leucine-rich re 99.4 2.2E-13 4.9E-18 100.7 2.5 153 8-160 108-293 (319)
17 KOG0618 Serine/threonine phosp 99.4 7.4E-14 1.6E-18 111.9 -0.4 149 5-158 261-465 (1081)
18 PRK15387 E3 ubiquitin-protein 99.4 1.3E-12 2.9E-17 105.7 6.2 84 74-166 383-466 (788)
19 PLN03150 hypothetical protein; 99.3 2.5E-12 5.4E-17 103.0 6.7 101 57-157 420-527 (623)
20 KOG0532 Leucine-rich repeat (L 99.3 1.3E-13 2.8E-18 105.8 -2.8 150 8-166 98-254 (722)
21 PRK15370 E3 ubiquitin-protein 99.3 7E-12 1.5E-16 101.7 6.8 55 98-158 326-380 (754)
22 KOG4237 Extracellular matrix p 99.3 2.7E-13 5.8E-18 100.0 -1.2 77 92-168 269-345 (498)
23 PLN03150 hypothetical protein; 99.3 1.7E-11 3.6E-16 98.3 8.4 94 74-167 419-512 (623)
24 PRK15370 E3 ubiquitin-protein 99.3 4.1E-12 8.9E-17 103.0 4.6 83 74-166 326-408 (754)
25 PF14580 LRR_9: Leucine-rich r 99.2 2.5E-11 5.4E-16 82.0 5.7 116 33-151 20-146 (175)
26 PRK15387 E3 ubiquitin-protein 99.2 4E-11 8.6E-16 97.2 7.3 101 57-171 344-447 (788)
27 KOG4237 Extracellular matrix p 99.2 4.7E-12 1E-16 93.5 -0.2 100 9-109 68-176 (498)
28 COG4886 Leucine-rich repeat (L 99.1 3.4E-11 7.3E-16 91.8 4.2 146 7-158 115-290 (394)
29 KOG1259 Nischarin, modulator o 99.1 8.3E-12 1.8E-16 89.7 -1.3 120 10-134 286-412 (490)
30 COG4886 Leucine-rich repeat (L 99.1 9.8E-11 2.1E-15 89.3 3.3 130 5-139 160-295 (394)
31 KOG1909 Ran GTPase-activating 99.0 4.2E-10 9.1E-15 82.0 3.7 155 4-158 88-283 (382)
32 KOG1259 Nischarin, modulator o 99.0 1E-10 2.3E-15 84.2 0.4 125 30-159 282-413 (490)
33 PF13855 LRR_8: Leucine rich r 99.0 4.8E-10 1E-14 62.9 2.9 60 8-67 1-61 (61)
34 PF13855 LRR_8: Leucine rich r 98.9 7.7E-10 1.7E-14 62.1 2.8 60 98-157 2-61 (61)
35 PF14580 LRR_9: Leucine-rich r 98.9 1.1E-09 2.4E-14 74.1 3.8 110 46-159 11-127 (175)
36 KOG3207 Beta-tubulin folding c 98.9 4E-10 8.7E-15 84.4 0.1 154 4-158 142-314 (505)
37 KOG1909 Ran GTPase-activating 98.6 3.8E-09 8.3E-14 77.1 -0.4 154 5-158 27-226 (382)
38 KOG3207 Beta-tubulin folding c 98.6 1.8E-09 4E-14 80.9 -2.5 152 6-158 119-284 (505)
39 KOG4658 Apoptotic ATPase [Sign 98.6 3.9E-08 8.4E-13 81.5 3.2 121 9-132 524-653 (889)
40 KOG1859 Leucine-rich repeat pr 98.5 3.4E-09 7.4E-14 84.2 -5.1 118 10-133 166-291 (1096)
41 KOG4579 Leucine-rich repeat (L 98.4 3.7E-08 8.1E-13 63.4 -1.5 126 37-166 33-167 (177)
42 COG5238 RNA1 Ran GTPase-activa 98.4 2.1E-07 4.6E-12 66.5 2.1 157 3-159 87-286 (388)
43 KOG4658 Apoptotic ATPase [Sign 98.3 6.7E-07 1.4E-11 74.4 4.6 81 74-155 572-652 (889)
44 KOG1859 Leucine-rich repeat pr 98.3 8.2E-08 1.8E-12 76.6 -1.3 98 56-158 165-267 (1096)
45 KOG0531 Protein phosphatase 1, 98.2 8.1E-08 1.8E-12 73.9 -2.1 120 9-133 73-198 (414)
46 KOG0531 Protein phosphatase 1, 98.2 1.4E-07 3E-12 72.6 -0.9 148 4-158 91-268 (414)
47 COG5238 RNA1 Ran GTPase-activa 98.2 5.1E-07 1.1E-11 64.6 1.8 153 5-158 27-227 (388)
48 KOG4579 Leucine-rich repeat (L 98.2 2.4E-07 5.2E-12 59.7 0.0 99 56-158 28-136 (177)
49 PF12799 LRR_4: Leucine Rich r 98.1 3.4E-06 7.4E-11 43.8 3.2 36 122-158 2-37 (44)
50 KOG2120 SCF ubiquitin ligase, 98.1 5E-08 1.1E-12 70.4 -5.0 148 6-155 208-373 (419)
51 PF12799 LRR_4: Leucine Rich r 98.1 4E-06 8.7E-11 43.5 3.3 36 98-134 2-37 (44)
52 PRK15386 type III secretion pr 97.9 3.8E-05 8.3E-10 58.6 6.2 75 4-84 48-123 (426)
53 KOG2982 Uncharacterized conser 97.8 1.7E-05 3.7E-10 57.7 2.8 153 7-159 70-263 (418)
54 KOG2120 SCF ubiquitin ligase, 97.7 8.6E-07 1.9E-11 64.2 -4.3 149 10-158 187-351 (419)
55 KOG3665 ZYG-1-like serine/thre 97.7 9.1E-06 2E-10 66.2 -0.3 16 53-68 171-186 (699)
56 PRK15386 type III secretion pr 97.6 0.00018 3.9E-09 55.0 5.7 112 30-155 50-187 (426)
57 KOG1644 U2-associated snRNP A' 97.5 0.0003 6.4E-09 48.5 4.9 98 33-132 43-151 (233)
58 KOG3665 ZYG-1-like serine/thre 97.3 0.00022 4.8E-09 58.3 2.9 126 32-159 122-264 (699)
59 KOG1644 U2-associated snRNP A' 97.2 0.00045 9.7E-09 47.6 3.4 95 10-106 44-149 (233)
60 KOG2739 Leucine-rich acidic nu 96.8 0.0011 2.3E-08 47.3 3.0 55 95-151 89-149 (260)
61 KOG2982 Uncharacterized conser 96.8 0.0012 2.6E-08 48.4 2.8 81 74-155 72-156 (418)
62 PF00560 LRR_1: Leucine Rich R 96.7 0.00076 1.6E-08 29.3 0.8 20 147-167 2-21 (22)
63 PF00560 LRR_1: Leucine Rich R 96.4 0.0016 3.5E-08 28.2 1.0 21 9-30 1-21 (22)
64 KOG2123 Uncharacterized conser 96.3 0.00039 8.4E-09 50.4 -2.1 95 31-127 18-123 (388)
65 KOG2739 Leucine-rich acidic nu 96.2 0.0026 5.6E-08 45.4 1.7 83 74-158 44-129 (260)
66 KOG2123 Uncharacterized conser 96.2 0.00076 1.7E-08 48.9 -1.1 66 4-72 37-105 (388)
67 PF13306 LRR_5: Leucine rich r 95.9 0.031 6.6E-07 35.5 5.6 15 51-65 31-45 (129)
68 KOG3864 Uncharacterized conser 95.1 0.0077 1.7E-07 41.6 0.7 80 74-153 102-184 (221)
69 KOG1947 Leucine rich repeat pr 95.0 0.018 4E-07 44.9 2.5 121 31-151 187-327 (482)
70 PF13306 LRR_5: Leucine rich r 95.0 0.11 2.3E-06 33.0 5.6 115 50-170 7-127 (129)
71 KOG4308 LRR-containing protein 94.2 0.0012 2.7E-08 51.8 -5.5 154 5-158 112-303 (478)
72 PF13516 LRR_6: Leucine Rich r 94.1 0.042 9E-07 24.1 1.6 17 121-137 2-18 (24)
73 PF13504 LRR_7: Leucine rich r 93.7 0.049 1.1E-06 21.9 1.3 10 99-108 3-12 (17)
74 KOG0473 Leucine-rich repeat pr 93.7 0.00097 2.1E-08 47.2 -6.2 84 51-136 38-126 (326)
75 KOG0473 Leucine-rich repeat pr 92.8 0.008 1.7E-07 42.7 -2.9 61 7-69 64-125 (326)
76 smart00370 LRR Leucine-rich re 92.4 0.1 2.2E-06 23.3 1.5 17 7-23 1-17 (26)
77 smart00369 LRR_TYP Leucine-ric 92.4 0.1 2.2E-06 23.3 1.5 17 7-23 1-17 (26)
78 KOG1947 Leucine rich repeat pr 89.2 0.4 8.6E-06 37.5 3.0 105 54-158 187-308 (482)
79 smart00368 LRR_RI Leucine rich 85.3 1.1 2.3E-05 20.4 2.1 15 121-135 2-16 (28)
80 smart00365 LRR_SD22 Leucine-ri 85.0 0.78 1.7E-05 20.7 1.5 16 7-22 1-16 (26)
81 KOG3864 Uncharacterized conser 84.8 0.24 5.1E-06 34.5 -0.4 59 98-156 102-162 (221)
82 smart00364 LRR_BAC Leucine-ric 81.9 1 2.2E-05 20.3 1.2 18 145-163 2-19 (26)
83 KOG4341 F-box protein containi 78.6 2.1 4.5E-05 33.4 2.6 126 30-155 292-436 (483)
84 KOG4308 LRR-containing protein 75.4 0.12 2.6E-06 40.9 -4.8 16 53-68 113-128 (478)
85 smart00367 LRR_CC Leucine-rich 60.7 7.2 0.00016 17.1 1.4 12 55-66 2-13 (26)
86 KOG3763 mRNA export factor TAP 41.3 25 0.00053 28.7 2.4 61 74-134 219-283 (585)
87 TIGR00864 PCC polycystin catio 27.5 45 0.00097 32.8 2.1 29 15-43 2-31 (2740)
88 KOG3763 mRNA export factor TAP 24.7 56 0.0012 26.8 1.9 12 54-65 243-254 (585)
89 TIGR00864 PCC polycystin catio 21.8 73 0.0016 31.5 2.3 30 80-109 2-31 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.89 E-value=5.7e-23 Score=171.16 Aligned_cols=157 Identities=32% Similarity=0.422 Sum_probs=67.7
Q ss_pred CCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEe
Q 040410 7 KKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLF 79 (171)
Q Consensus 7 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~ 79 (171)
+++|++|+|++|.+++..|..++.+++|++ ++++|.+.+.+|..+..+++|++|++++|.+.+..| + +|++|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 344444444444444444444444444444 444444443444444444444444444444443333 2 344444
Q ss_pred cccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCcccc
Q 040410 80 LVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRG 159 (171)
Q Consensus 80 l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 159 (171)
+++|.+.+..|..++.+++|++|++++|.+.+.+|..++++++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 298 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG 298 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc
Confidence 44444444444444444444444444444443444444444444444444444433333333344444444444444333
Q ss_pred ccCc
Q 040410 160 RIKL 163 (171)
Q Consensus 160 ~~p~ 163 (171)
.+|.
T Consensus 299 ~~p~ 302 (968)
T PLN00113 299 EIPE 302 (968)
T ss_pred CCCh
Confidence 3333
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.89 E-value=6.4e-23 Score=170.87 Aligned_cols=167 Identities=30% Similarity=0.376 Sum_probs=107.9
Q ss_pred cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccc
Q 040410 4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLK 76 (171)
Q Consensus 4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~ 76 (171)
++++++|++|++++|.+.+..|..++.+++|++ ++++|.+.+.+|+.++.+++|++|++++|.+.+..| + +|+
T Consensus 160 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 239 (968)
T PLN00113 160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239 (968)
T ss_pred HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCC
Confidence 455666666666666666656666666666666 666666665566666666666666666666665555 4 666
Q ss_pred eEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCc
Q 040410 77 RLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNS 156 (171)
Q Consensus 77 ~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 156 (171)
+|++++|.+.+..|..++.+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|..+.++++|++|++++|.
T Consensus 240 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~ 319 (968)
T PLN00113 240 HLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNN 319 (968)
T ss_pred EEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCc
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cccccCcccccccC
Q 040410 157 FRGRIKLDFELSKE 170 (171)
Q Consensus 157 ~~~~~p~~~~~l~~ 170 (171)
+.+.+|..+..+++
T Consensus 320 ~~~~~~~~~~~l~~ 333 (968)
T PLN00113 320 FTGKIPVALTSLPR 333 (968)
T ss_pred cCCcCChhHhcCCC
Confidence 66666655555544
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.82 E-value=2.6e-22 Score=132.44 Aligned_cols=161 Identities=24% Similarity=0.278 Sum_probs=130.3
Q ss_pred cccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-c
Q 040410 2 SDQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-S 74 (171)
Q Consensus 2 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~ 74 (171)
+.+.++++++.|.|++|.++. +|+.++.+.+|+. ++.+|+++ ++|.++.++++|++|++..|++. ..| . .
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~ 103 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPA 103 (264)
T ss_pred ccccchhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCch
Confidence 456677788888999999886 6778888999999 99989887 78888999999999998888776 344 4 7
Q ss_pred cceEeccccccc-ccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecc
Q 040410 75 LKRLFLVSCNFW-EKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLS 153 (171)
Q Consensus 75 L~~L~l~~~~~~-~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 153 (171)
++.|++.+|++. ..+|..|..+..|+.|++++|.+. -+|..++++++|+.|.+..|.+. .+|..++.++.|++|+++
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiq 181 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQ 181 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcc
Confidence 888888888775 346778888888888888888887 67888888888888888888876 578888888888888888
Q ss_pred cCccccccCcccccc
Q 040410 154 QNSFRGRIKLDFELS 168 (171)
Q Consensus 154 ~n~~~~~~p~~~~~l 168 (171)
+|++. .+|..++.+
T Consensus 182 gnrl~-vlppel~~l 195 (264)
T KOG0617|consen 182 GNRLT-VLPPELANL 195 (264)
T ss_pred cceee-ecChhhhhh
Confidence 88886 567666554
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.78 E-value=2.8e-21 Score=127.60 Aligned_cols=153 Identities=22% Similarity=0.311 Sum_probs=133.2
Q ss_pred cccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCc-cc-----c-
Q 040410 2 SDQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSE-FS-----C- 73 (171)
Q Consensus 2 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~-----~- 73 (171)
+.+..+.+|+.|++.+|.+++ +|.+++.+++|+. ++.-|.+. .+|..|+.+|.|+.||+.+|++... .| +
T Consensus 50 pnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~ 127 (264)
T KOG0617|consen 50 PNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMT 127 (264)
T ss_pred CcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHH
Confidence 467789999999999999987 7889999999999 99999987 7999999999999999999988653 45 6
Q ss_pred ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhcccc---CceE
Q 040410 74 SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQ---LIIL 150 (171)
Q Consensus 74 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~---L~~L 150 (171)
.++.|++++|.+. .+|..++++++|+.|.+.+|.+- .+|+.++.++.|+.|.+++|++. .+|+.++.+.- =+..
T Consensus 128 tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~ 204 (264)
T KOG0617|consen 128 TLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVM 204 (264)
T ss_pred HHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHH
Confidence 8999999999998 78999999999999999999988 89999999999999999999998 57777777632 2344
Q ss_pred ecccCcccc
Q 040410 151 HLSQNSFRG 159 (171)
Q Consensus 151 ~l~~n~~~~ 159 (171)
.+..|.+..
T Consensus 205 r~E~NPwv~ 213 (264)
T KOG0617|consen 205 RMEENPWVN 213 (264)
T ss_pred hhhhCCCCC
Confidence 566666653
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.66 E-value=3.5e-17 Score=125.47 Aligned_cols=165 Identities=21% Similarity=0.083 Sum_probs=134.8
Q ss_pred cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccc
Q 040410 4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLK 76 (171)
Q Consensus 4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~ 76 (171)
|..+.+++.|+|..|.++..-...+..|+.|+. ++++|.+...-++.+.-.++|++|++++|+++..-+ + .|+
T Consensus 265 Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le 344 (873)
T KOG4194|consen 265 FYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLE 344 (873)
T ss_pred eeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhh
Confidence 445777888888888888766667888999999 999999886667777778899999999999985544 4 899
Q ss_pred eEecccccccccChhhhhcCcCCcEEEccccccccccc---ccccCCCCCceEecccCccchhhhHHhhccccCceEecc
Q 040410 77 RLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELL---ASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLS 153 (171)
Q Consensus 77 ~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~---~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 153 (171)
+|+++.|+++......|..+.+|+.|+++.|.+++.+- ..+..+++|+.|++.+|.+......+|..+..|++||+.
T Consensus 345 ~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~ 424 (873)
T KOG4194|consen 345 ELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLG 424 (873)
T ss_pred hhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCC
Confidence 99999999986555678888999999999999876544 345678999999999999985545789999999999999
Q ss_pred cCccccccCcccccc
Q 040410 154 QNSFRGRIKLDFELS 168 (171)
Q Consensus 154 ~n~~~~~~p~~~~~l 168 (171)
+|.+...-|..|..+
T Consensus 425 ~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 425 DNAIASIQPNAFEPM 439 (873)
T ss_pred CCcceeecccccccc
Confidence 999876556666654
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.63 E-value=4.7e-17 Score=124.77 Aligned_cols=155 Identities=18% Similarity=0.103 Sum_probs=79.8
Q ss_pred cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccc
Q 040410 4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLK 76 (171)
Q Consensus 4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~ 76 (171)
|..+.+|.+|.|+.|+++...+..|.+|++|+. ++..|.+...-.-.|.++++|+.+.+.+|.+...-. | +++
T Consensus 193 F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme 272 (873)
T KOG4194|consen 193 FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKME 272 (873)
T ss_pred ccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccc
Confidence 445556666667777776655566677777777 777776642213335555555555555554431111 3 444
Q ss_pred eEecccccccccChhhhhcCcCCcEEEcccccccccccc------------------------cccCCCCCceEecccCc
Q 040410 77 RLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLA------------------------STKNLKSLEVLAINKCN 132 (171)
Q Consensus 77 ~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~------------------------~~~~l~~L~~L~l~~n~ 132 (171)
+|++..|+++.....++..+++|+.|++++|.|..--++ ++..+..|+.|.+++|+
T Consensus 273 ~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns 352 (873)
T KOG4194|consen 273 HLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS 352 (873)
T ss_pred eeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc
Confidence 444444444433333344444444444444444433334 44444444444444444
Q ss_pred cchhhhHHhhccccCceEecccCccc
Q 040410 133 FFNRILFLLRNLIQLIILHLSQNSFR 158 (171)
Q Consensus 133 ~~~~~~~~~~~~~~L~~L~l~~n~~~ 158 (171)
++..--.+|..+++|++||+++|.++
T Consensus 353 i~~l~e~af~~lssL~~LdLr~N~ls 378 (873)
T KOG4194|consen 353 IDHLAEGAFVGLSSLHKLDLRSNELS 378 (873)
T ss_pred hHHHHhhHHHHhhhhhhhcCcCCeEE
Confidence 44322234555566666666666654
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.62 E-value=1.8e-17 Score=128.35 Aligned_cols=162 Identities=22% Similarity=0.223 Sum_probs=88.0
Q ss_pred ccccCCCCcEEEeecccccCCCCCccCC------------------------cchhhh-hcCCCccCCcCCccCCCCCCC
Q 040410 3 DQAKKKQHTYVRLQAKHYTGELPFLSGN------------------------LRSLKE-DLSKNNSSGELPTSIGNLFPL 57 (171)
Q Consensus 3 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~------------------------l~~L~~-~l~~~~~~~~~~~~~~~l~~L 57 (171)
++.++..|+.|||++|.+.+ +|..+.+ +..|-. |+++|.+. .+|+.+..+..|
T Consensus 98 diF~l~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~L 175 (1255)
T KOG0444|consen 98 DIFRLKDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSML 175 (1255)
T ss_pred hhcccccceeeecchhhhhh-cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhh
Confidence 45556666666666665554 3433333 344444 44444443 445555555555
Q ss_pred cEEEccCCcCC----Cccc-c-ccceEeccccccc-ccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEeccc
Q 040410 58 KELDFLFNKLS----SEFS-C-SLKRLFLVSCNFW-EKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINK 130 (171)
Q Consensus 58 ~~L~l~~~~~~----~~~~-~-~L~~L~l~~~~~~-~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 130 (171)
++|++++|.+. ..+| | +|++|++++.+-+ ..+|.++..+.+|..++++.|.+. .+|+-+.++.+|+.|.+++
T Consensus 176 qtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~ 254 (1255)
T KOG0444|consen 176 QTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSG 254 (1255)
T ss_pred hhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCc
Confidence 55555555442 1223 4 5666666554433 345666666666777777776666 5666666677777777777
Q ss_pred CccchhhhHHhhccccCceEecccCccccccCccccccc
Q 040410 131 CNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELSK 169 (171)
Q Consensus 131 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~ 169 (171)
|.++ ++....+...++++|+++.|++. .+|+.++.++
T Consensus 255 N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~ 291 (1255)
T KOG0444|consen 255 NKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLT 291 (1255)
T ss_pred Ccee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhH
Confidence 6665 33333344444455555555544 3444444443
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.55 E-value=1.9e-16 Score=122.87 Aligned_cols=146 Identities=21% Similarity=0.272 Sum_probs=81.3
Q ss_pred CCCCcEEEeeccccc-CCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c--ccceEe
Q 040410 7 KKQHTYVRLQAKHYT-GELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C--SLKRLF 79 (171)
Q Consensus 7 l~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~--~L~~L~ 79 (171)
++.|.+|.+++..-+ ..+|.++..+.+|+. |++.|.+. .+|+.+-.+++|+.|++++|.++.... . .+++|+
T Consensus 196 mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLN 274 (1255)
T KOG0444|consen 196 MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLN 274 (1255)
T ss_pred chhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhc
Confidence 444555555554332 235666666666666 66666665 566666666666666666666553222 1 455555
Q ss_pred cccccccccC-------------------------hhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccc
Q 040410 80 LVSCNFWEKV-------------------------PHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFF 134 (171)
Q Consensus 80 l~~~~~~~~~-------------------------~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 134 (171)
++.|+++ .+ |.+||.+.+|+.+..++|.+. -+|+++|++..|+.|.+++|++.
T Consensus 275 lSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi 352 (1255)
T KOG0444|consen 275 LSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI 352 (1255)
T ss_pred cccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee
Confidence 5555554 34 444555555555555555444 45555665555666666665554
Q ss_pred hhhhHHhhccccCceEecccCc
Q 040410 135 NRILFLLRNLIQLIILHLSQNS 156 (171)
Q Consensus 135 ~~~~~~~~~~~~L~~L~l~~n~ 156 (171)
.+|+++--++.|+.||+..|.
T Consensus 353 -TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 353 -TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred -echhhhhhcCCcceeeccCCc
Confidence 355555555666666666554
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.54 E-value=3.3e-14 Score=120.60 Aligned_cols=148 Identities=26% Similarity=0.200 Sum_probs=68.0
Q ss_pred cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc--c-ccceEe
Q 040410 4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS--C-SLKRLF 79 (171)
Q Consensus 4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~-~L~~L~ 79 (171)
+..+++|++|++++|.....+|..+..+++|+. ++++|...+.+|..+ .+++|+.|++++|...+.+| . +|++|+
T Consensus 653 ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~ 731 (1153)
T PLN03210 653 LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLD 731 (1153)
T ss_pred cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeee
Confidence 334444555555544433334445555555555 555543333444433 44555555555544333333 2 444555
Q ss_pred cccccccccChhhh------------------------------hcCcCCcEEEcccccccccccccccCCCCCceEecc
Q 040410 80 LVSCNFWEKVPHSI------------------------------NNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAIN 129 (171)
Q Consensus 80 l~~~~~~~~~~~~~------------------------------~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~ 129 (171)
+.+|.+. .+|..+ ...++|+.|++++|.....+|.+++++++|+.|+++
T Consensus 732 L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls 810 (1153)
T PLN03210 732 LDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIE 810 (1153)
T ss_pred cCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECC
Confidence 5444433 222211 011345555555555444556666666666666666
Q ss_pred cCccchhhhHHhhccccCceEeccc
Q 040410 130 KCNFFNRILFLLRNLIQLIILHLSQ 154 (171)
Q Consensus 130 ~n~~~~~~~~~~~~~~~L~~L~l~~ 154 (171)
+|...+.+|... .+++|++|++++
T Consensus 811 ~C~~L~~LP~~~-~L~sL~~L~Ls~ 834 (1153)
T PLN03210 811 NCINLETLPTGI-NLESLESLDLSG 834 (1153)
T ss_pred CCCCcCeeCCCC-CccccCEEECCC
Confidence 554333344322 333344444433
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.53 E-value=1.2e-16 Score=117.80 Aligned_cols=149 Identities=26% Similarity=0.304 Sum_probs=103.0
Q ss_pred cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCC--ccc-c-ccceE
Q 040410 4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSS--EFS-C-SLKRL 78 (171)
Q Consensus 4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~-~-~L~~L 78 (171)
++.+..+..+++.+|.+....|..+. ++.|++ |...|.++ .+|+.++.+.+|.-|++..|.+.. .+| | .+.++
T Consensus 156 ~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~El 233 (565)
T KOG0472|consen 156 MVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKEL 233 (565)
T ss_pred HHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHH
Confidence 34444555566666666553333333 677777 76666665 677777777777777777777652 223 6 77788
Q ss_pred ecccccccccChhhhh-cCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCcc
Q 040410 79 FLVSCNFWEKVPHSIN-NFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSF 157 (171)
Q Consensus 79 ~l~~~~~~~~~~~~~~-~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 157 (171)
+.+.|.+. .+|...+ .++++.+||+.+|.+. ++|+.++.+++|.+||+++|.++ .+|..++++ .|+.|-+.+|++
T Consensus 234 h~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 234 HVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred HhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCch
Confidence 88888776 4555554 6778888888888877 77888888888888888888887 467777777 677777777776
Q ss_pred c
Q 040410 158 R 158 (171)
Q Consensus 158 ~ 158 (171)
.
T Consensus 310 r 310 (565)
T KOG0472|consen 310 R 310 (565)
T ss_pred H
Confidence 4
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.52 E-value=1.3e-16 Score=117.62 Aligned_cols=157 Identities=24% Similarity=0.188 Sum_probs=88.7
Q ss_pred cCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc----c-ccceEe
Q 040410 6 KKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS----C-SLKRLF 79 (171)
Q Consensus 6 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~-~L~~L~ 79 (171)
.+.+++.++.++|.+.+ .+++++.+..++. +..+|.++ .+|+.++.+.++..+++.+|.+....| | .+++++
T Consensus 112 s~~~l~~l~~s~n~~~e-l~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld 189 (565)
T KOG0472|consen 112 SLISLVKLDCSSNELKE-LPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLD 189 (565)
T ss_pred hhhhhhhhhccccceee-cCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcc
Confidence 34445555555555544 4445555555555 55555544 444444444444444444444442222 3 444444
Q ss_pred cccccccccChhh----------------------hhcCcCCcEEEccccccccccccccc-CCCCCceEecccCccchh
Q 040410 80 LVSCNFWEKVPHS----------------------INNFARLQWYDLVFNKFSGELLASTK-NLKSLEVLAINKCNFFNR 136 (171)
Q Consensus 80 l~~~~~~~~~~~~----------------------~~~l~~L~~l~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~ 136 (171)
...|-+. .+|+. |+.+..|++++++.|.+. -+|...+ .+.++..||+..|.+. +
T Consensus 190 ~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e 266 (565)
T KOG0472|consen 190 CNSNLLE-TLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-E 266 (565)
T ss_pred cchhhhh-cCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-c
Confidence 4444443 34444 444444555555555544 4554444 6677777778777776 6
Q ss_pred hhHHhhccccCceEecccCccccccCcccccc
Q 040410 137 ILFLLRNLIQLIILHLSQNSFRGRIKLDFELS 168 (171)
Q Consensus 137 ~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l 168 (171)
.|.++..+++|.+||+++|.+++ +|-.++++
T Consensus 267 ~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl 297 (565)
T KOG0472|consen 267 VPDEICLLRSLERLDLSNNDISS-LPYSLGNL 297 (565)
T ss_pred CchHHHHhhhhhhhcccCCcccc-CCcccccc
Confidence 78888888888888888888874 67777665
No 12
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.48 E-value=9.6e-16 Score=117.15 Aligned_cols=156 Identities=26% Similarity=0.324 Sum_probs=106.3
Q ss_pred CCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c--ccceEec
Q 040410 7 KKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C--SLKRLFL 80 (171)
Q Consensus 7 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~--~L~~L~l 80 (171)
+..-+..||+.|++.+ +|..++.+..|+. .++.|.+. .+|+.+..+..|.+++++.|+++ ..| | .|+.|.+
T Consensus 74 ltdt~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lpLkvli~ 150 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSE-LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLPLKVLIV 150 (722)
T ss_pred ccchhhhhcccccccc-CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCcceeEEE
Confidence 4455677889999887 7888888889999 88888886 78888889999999999999887 444 4 7888888
Q ss_pred ccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccccc
Q 040410 81 VSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGR 160 (171)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 160 (171)
++|+++ .+|..++....|..++.+.|.+. .+|..++++.+|+.|.+..|++. .+|..+..++ |.+||+++|++. .
T Consensus 151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~ 225 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-Y 225 (722)
T ss_pred ecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-e
Confidence 888776 56777776666777777666665 45555555555555555555544 3444444332 455555555554 3
Q ss_pred cCcccccccC
Q 040410 161 IKLDFELSKE 170 (171)
Q Consensus 161 ~p~~~~~l~~ 170 (171)
+|-.|.+|+.
T Consensus 226 iPv~fr~m~~ 235 (722)
T KOG0532|consen 226 LPVDFRKMRH 235 (722)
T ss_pred cchhhhhhhh
Confidence 4555554443
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.48 E-value=1.4e-14 Score=116.05 Aligned_cols=149 Identities=23% Similarity=0.217 Sum_probs=121.5
Q ss_pred ccCCCCcEEEeecccccCCCCCcc-------------------------CCcchhhh-hcCCCccCCcCCccCCCCCCCc
Q 040410 5 AKKKQHTYVRLQAKHYTGELPFLS-------------------------GNLRSLKE-DLSKNNSSGELPTSIGNLFPLK 58 (171)
Q Consensus 5 ~~l~~L~~L~L~~~~~~~~~~~~~-------------------------~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~ 58 (171)
..++.|++|+|..|.+...++..+ ..+..|+. .+.+|.+++...+.+.++++|+
T Consensus 307 e~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLK 386 (1081)
T KOG0618|consen 307 EGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLK 386 (1081)
T ss_pred cccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcccccee
Confidence 358889999999998765221111 13466888 8899999877777899999999
Q ss_pred EEEccCCcCCCccc------c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccC
Q 040410 59 ELDFLFNKLSSEFS------C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKC 131 (171)
Q Consensus 59 ~L~l~~~~~~~~~~------~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 131 (171)
.|++++|++. .+| . .|++|++++|+++ .+|..+..+..|++|....|.+. .+| .+..++.|+.+|++.|
T Consensus 387 VLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N 462 (1081)
T KOG0618|consen 387 VLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCN 462 (1081)
T ss_pred eeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccc
Confidence 9999999988 566 4 7899999999998 78999999999999999999998 788 7899999999999999
Q ss_pred ccchhhhHHhhccccCceEecccCcc
Q 040410 132 NFFNRILFLLRNLIQLIILHLSQNSF 157 (171)
Q Consensus 132 ~~~~~~~~~~~~~~~L~~L~l~~n~~ 157 (171)
.++...-.+....++|++||+++|..
T Consensus 463 ~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 463 NLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhhhhhhhCCCcccceeeccCCcc
Confidence 98753333333338899999999984
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.48 E-value=8.6e-15 Score=108.24 Aligned_cols=155 Identities=25% Similarity=0.220 Sum_probs=81.4
Q ss_pred cccCCCCcEEEeecccccCCCCCccCCcch---hhh-hcCCCccCC----cCCccCCCC-CCCcEEEccCCcCCCccc--
Q 040410 4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRS---LKE-DLSKNNSSG----ELPTSIGNL-FPLKELDFLFNKLSSEFS-- 72 (171)
Q Consensus 4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~---L~~-~l~~~~~~~----~~~~~~~~l-~~L~~L~l~~~~~~~~~~-- 72 (171)
+.++++|+.|++++|.+....+..+..+.. |++ ++++|.+.+ .+...+..+ ++|+.+++++|.+++...
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 344566777777777665434444444433 666 666666541 122234445 666777777666653211
Q ss_pred -------c-ccceEeccccccccc----ChhhhhcCcCCcEEEccccccccc----ccccccCCCCCceEecccCccchh
Q 040410 73 -------C-SLKRLFLVSCNFWEK----VPHSINNFARLQWYDLVFNKFSGE----LLASTKNLKSLEVLAINKCNFFNR 136 (171)
Q Consensus 73 -------~-~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~ 136 (171)
+ .+++|++++|.+.+. ++..+...++|+.|++++|.+.+. ++..+..+++|++|++++|.+.+.
T Consensus 157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~ 236 (319)
T cd00116 157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA 236 (319)
T ss_pred HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH
Confidence 3 566666666666532 222333445666666666655422 233344556666666666665542
Q ss_pred hhHHhhc-----cccCceEecccCccc
Q 040410 137 ILFLLRN-----LIQLIILHLSQNSFR 158 (171)
Q Consensus 137 ~~~~~~~-----~~~L~~L~l~~n~~~ 158 (171)
....+.. .+.|++|++++|.+.
T Consensus 237 ~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 237 GAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHHHHHhccCCCceEEEccCCCCC
Confidence 2222211 145666666666553
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.47 E-value=3.8e-13 Score=114.20 Aligned_cols=157 Identities=22% Similarity=0.200 Sum_probs=108.1
Q ss_pred cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc----c-ccce
Q 040410 4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS----C-SLKR 77 (171)
Q Consensus 4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~-~L~~ 77 (171)
+..+++|+.++|+++.....+| .++.+++|+. ++.+|.....+|..+..+++|+.|++++|...+.+| + +|+.
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~ 708 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYR 708 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCE
Confidence 3456677777777665444344 4666777777 777776555677777778888888888776555555 4 7788
Q ss_pred EecccccccccChhhhhcCcCCcEEEcccccccccccccc------------------------------cCCCCCceEe
Q 040410 78 LFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLAST------------------------------KNLKSLEVLA 127 (171)
Q Consensus 78 L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~------------------------------~~l~~L~~L~ 127 (171)
|++++|.....+|.. ..+|+.|++.+|.+. .+|..+ ...++|+.|+
T Consensus 709 L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~ 784 (1153)
T PLN03210 709 LNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLF 784 (1153)
T ss_pred EeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchhee
Confidence 888877655445532 356778888887765 455432 1124677888
Q ss_pred cccCccchhhhHHhhccccCceEecccCccccccCccc
Q 040410 128 INKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDF 165 (171)
Q Consensus 128 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~ 165 (171)
+++|...+.+|..++++++|+.|++++|...+.+|..+
T Consensus 785 Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~ 822 (1153)
T PLN03210 785 LSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI 822 (1153)
T ss_pred CCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC
Confidence 88887777889999999999999999876555666553
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.37 E-value=2.2e-13 Score=100.67 Aligned_cols=153 Identities=19% Similarity=0.190 Sum_probs=114.3
Q ss_pred CCCcEEEeecccccCC----CCCccCCc-chhhh-hcCCCccCC----cCCccCCCCCCCcEEEccCCcCCCcc----c-
Q 040410 8 KQHTYVRLQAKHYTGE----LPFLSGNL-RSLKE-DLSKNNSSG----ELPTSIGNLFPLKELDFLFNKLSSEF----S- 72 (171)
Q Consensus 8 ~~L~~L~L~~~~~~~~----~~~~~~~l-~~L~~-~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~----~- 72 (171)
++|++|++++|.+++. +...+..+ ++|++ ++++|.+++ .+...+..+++|++|++++|.+.+.. +
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 187 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE 187 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence 4599999999998742 23345566 88999 999999873 23344667789999999999987421 1
Q ss_pred ----c-ccceEeccccccccc----ChhhhhcCcCCcEEEcccccccccccccccC-----CCCCceEecccCccch---
Q 040410 73 ----C-SLKRLFLVSCNFWEK----VPHSINNFARLQWYDLVFNKFSGELLASTKN-----LKSLEVLAINKCNFFN--- 135 (171)
Q Consensus 73 ----~-~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~-----l~~L~~L~l~~n~~~~--- 135 (171)
. +|++|++++|.+.+. +...+..+++|++|++++|.+.+.....++. ...|++|++++|.++.
T Consensus 188 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~ 267 (319)
T cd00116 188 GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGA 267 (319)
T ss_pred HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHH
Confidence 4 799999999988643 3345567789999999999887643443432 3799999999999862
Q ss_pred -hhhHHhhccccCceEecccCccccc
Q 040410 136 -RILFLLRNLIQLIILHLSQNSFRGR 160 (171)
Q Consensus 136 -~~~~~~~~~~~L~~L~l~~n~~~~~ 160 (171)
.+...+..+++|+++++++|.+...
T Consensus 268 ~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 268 KDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HHHHHHHhcCCCccEEECCCCCCcHH
Confidence 3445566678899999999998743
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.36 E-value=7.4e-14 Score=111.93 Aligned_cols=149 Identities=23% Similarity=0.318 Sum_probs=94.1
Q ss_pred ccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----------
Q 040410 5 AKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS----------- 72 (171)
Q Consensus 5 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----------- 72 (171)
+.+.+|+.+...+|.++. +|..+....+|+. ....|.++ .+|+...++.+|++|++..|++.. +|
T Consensus 261 ~~~~nle~l~~n~N~l~~-lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~-lp~~~l~v~~~~l 337 (1081)
T KOG0618|consen 261 GACANLEALNANHNRLVA-LPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPS-LPDNFLAVLNASL 337 (1081)
T ss_pred HhcccceEecccchhHHh-hHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccc-cchHHHhhhhHHH
Confidence 456666677777776644 5666677777777 77777776 788888888899999998887652 22
Q ss_pred --------------------c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccc-cccCCCCCceEeccc
Q 040410 73 --------------------C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLA-STKNLKSLEVLAINK 130 (171)
Q Consensus 73 --------------------~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~-~~~~l~~L~~L~l~~ 130 (171)
+ .++.|++.+|.+++..-.-+.++.+|+.|++++|.+. .+|. .+.++..|++|++++
T Consensus 338 ~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSG 416 (1081)
T KOG0618|consen 338 NTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSG 416 (1081)
T ss_pred HHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhccc
Confidence 2 4555666666666555555556666666666666655 4443 344556666666666
Q ss_pred Cccch----------------------hhhHHhhccccCceEecccCccc
Q 040410 131 CNFFN----------------------RILFLLRNLIQLIILHLSQNSFR 158 (171)
Q Consensus 131 n~~~~----------------------~~~~~~~~~~~L~~L~l~~n~~~ 158 (171)
|.+.. .+| .+..++.|+.+|++.|.++
T Consensus 417 NkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 417 NKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred chhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhh
Confidence 65442 234 4455555666666666654
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.35 E-value=1.3e-12 Score=105.65 Aligned_cols=84 Identities=18% Similarity=0.153 Sum_probs=55.3
Q ss_pred ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecc
Q 040410 74 SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLS 153 (171)
Q Consensus 74 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 153 (171)
+|+.|++++|.+. .+|.. .++|+.|++++|.+. .+|.. ..+|+.|++++|.++ .+|..+..+++++.++++
T Consensus 383 ~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 383 GLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 453 (788)
T ss_pred ccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence 4555555555554 23321 235666666666665 45543 235677778888877 678888889999999999
Q ss_pred cCccccccCcccc
Q 040410 154 QNSFRGRIKLDFE 166 (171)
Q Consensus 154 ~n~~~~~~p~~~~ 166 (171)
+|.+++..|..+.
T Consensus 454 ~N~Ls~~~~~~L~ 466 (788)
T PRK15387 454 GNPLSERTLQALR 466 (788)
T ss_pred CCCCCchHHHHHH
Confidence 9999877666553
No 19
>PLN03150 hypothetical protein; Provisional
Probab=99.33 E-value=2.5e-12 Score=103.03 Aligned_cols=101 Identities=21% Similarity=0.306 Sum_probs=66.0
Q ss_pred CcEEEccCCcCCCccc-----c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEeccc
Q 040410 57 LKELDFLFNKLSSEFS-----C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINK 130 (171)
Q Consensus 57 L~~L~l~~~~~~~~~~-----~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 130 (171)
++.|++++|.+.+.+| + +|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|+.++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 5566666666666655 4 666677777766666666666666777777777766666666666666777777777
Q ss_pred CccchhhhHHhhcc-ccCceEecccCcc
Q 040410 131 CNFFNRILFLLRNL-IQLIILHLSQNSF 157 (171)
Q Consensus 131 n~~~~~~~~~~~~~-~~L~~L~l~~n~~ 157 (171)
|.+.+.+|..++.. .++..+++.+|..
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCcc
Confidence 76666666665543 3445666666653
No 20
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.29 E-value=1.3e-13 Score=105.76 Aligned_cols=150 Identities=22% Similarity=0.220 Sum_probs=114.1
Q ss_pred CCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEec
Q 040410 8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFL 80 (171)
Q Consensus 8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l 80 (171)
..|..+.|..|++-. +|..++.+..|.. +++.|.++ .+|..+..++ |+.+-+++|+++ .+| . .+..|+.
T Consensus 98 ~~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~ 173 (722)
T KOG0532|consen 98 VSLESLILYHNCIRT-IPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDV 173 (722)
T ss_pred HHHHHHHHHhcccee-cchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhh
Confidence 345556666676654 6777888888888 88888877 7777776665 788888888776 333 3 7777888
Q ss_pred ccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccccc
Q 040410 81 VSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGR 160 (171)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 160 (171)
+.|.+. .+|..++++.+|+.+++..|++. .+|+.++.+ .|..||+++|++. .+|-.|.+|+.|++|-+.+|.+. .
T Consensus 174 s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-S 248 (722)
T KOG0532|consen 174 SKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-S 248 (722)
T ss_pred hhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-C
Confidence 888887 67778888888888888888887 678888744 4888888888887 57888888888888888888886 3
Q ss_pred cCcccc
Q 040410 161 IKLDFE 166 (171)
Q Consensus 161 ~p~~~~ 166 (171)
.|..++
T Consensus 249 PPAqIC 254 (722)
T KOG0532|consen 249 PPAQIC 254 (722)
T ss_pred ChHHHH
Confidence 455443
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.29 E-value=7e-12 Score=101.67 Aligned_cols=55 Identities=24% Similarity=0.212 Sum_probs=26.4
Q ss_pred CCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccc
Q 040410 98 RLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFR 158 (171)
Q Consensus 98 ~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 158 (171)
+|+.|++++|.+. .+|..+. ++|+.|++++|.+. .+|..+ .++|++|++++|.+.
T Consensus 326 sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt 380 (754)
T PRK15370 326 GLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT 380 (754)
T ss_pred cceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC
Confidence 4555555555554 3444332 35555555555554 234322 134555555555544
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.28 E-value=2.7e-13 Score=100.00 Aligned_cols=77 Identities=16% Similarity=0.086 Sum_probs=59.3
Q ss_pred hhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccccccCcccccc
Q 040410 92 SINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELS 168 (171)
Q Consensus 92 ~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l 168 (171)
.|..+++|+.+++++|.+++--+.+|.+...++.|.+..|.+...-...|.++..|++|++.+|+++-.-|..|..+
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~ 345 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTL 345 (498)
T ss_pred HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccc
Confidence 56778889999999998886666788888888888888888765445667888888888888888875555555443
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.27 E-value=1.7e-11 Score=98.31 Aligned_cols=94 Identities=29% Similarity=0.322 Sum_probs=84.4
Q ss_pred ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecc
Q 040410 74 SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLS 153 (171)
Q Consensus 74 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 153 (171)
.++.|++.+|.+.+.+|..++.+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37788999999998899999999999999999999988899889999999999999999998899999999999999999
Q ss_pred cCccccccCccccc
Q 040410 154 QNSFRGRIKLDFEL 167 (171)
Q Consensus 154 ~n~~~~~~p~~~~~ 167 (171)
+|.+.+.+|..+..
T Consensus 499 ~N~l~g~iP~~l~~ 512 (623)
T PLN03150 499 GNSLSGRVPAALGG 512 (623)
T ss_pred CCcccccCChHHhh
Confidence 99999888877654
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.27 E-value=4.1e-12 Score=102.98 Aligned_cols=83 Identities=20% Similarity=0.234 Sum_probs=52.4
Q ss_pred ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecc
Q 040410 74 SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLS 153 (171)
Q Consensus 74 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 153 (171)
+|++|++++|.++. +|..+. ++|+.|++++|.+. .+|..+. .+|+.|++++|.+. .+|..+. .+|+.|+++
T Consensus 326 sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs 396 (754)
T PRK15370 326 GLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQAS 396 (754)
T ss_pred cceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhc
Confidence 46666666666652 444432 57888888888776 5666553 57788888888776 4565443 246777777
Q ss_pred cCccccccCcccc
Q 040410 154 QNSFRGRIKLDFE 166 (171)
Q Consensus 154 ~n~~~~~~p~~~~ 166 (171)
+|.+. .+|..+.
T Consensus 397 ~N~L~-~LP~sl~ 408 (754)
T PRK15370 397 RNNLV-RLPESLP 408 (754)
T ss_pred cCCcc-cCchhHH
Confidence 77776 4555443
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.22 E-value=2.5e-11 Score=82.04 Aligned_cols=116 Identities=28% Similarity=0.341 Sum_probs=38.3
Q ss_pred hhhh-hcCCCccCCcCCccCC-CCCCCcEEEccCCcCCCccc---c-ccceEecccccccccChhhh-hcCcCCcEEEcc
Q 040410 33 SLKE-DLSKNNSSGELPTSIG-NLFPLKELDFLFNKLSSEFS---C-SLKRLFLVSCNFWEKVPHSI-NNFARLQWYDLV 105 (171)
Q Consensus 33 ~L~~-~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~---~-~L~~L~l~~~~~~~~~~~~~-~~l~~L~~l~l~ 105 (171)
++++ ++.+|.++ .+. .++ .+.+|+.|++++|.+...-. + .|++|++++|.++. +...+ ..+++|++|+++
T Consensus 20 ~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 20 KLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-T
T ss_pred ccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECc
Confidence 3445 55555554 222 233 34555555555555542211 3 55555555555553 33333 356778888888
Q ss_pred cccccc-cccccccCCCCCceEecccCccchh---hhHHhhccccCceEe
Q 040410 106 FNKFSG-ELLASTKNLKSLEVLAINKCNFFNR---ILFLLRNLIQLIILH 151 (171)
Q Consensus 106 ~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~---~~~~~~~~~~L~~L~ 151 (171)
+|.+.. .-...++.+++|+.|++.+|.+... -...+..+++|+.||
T Consensus 97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 97 NNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp TS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred CCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 887753 1124556777788888888776532 123466777888776
No 26
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.21 E-value=4e-11 Score=97.25 Aligned_cols=101 Identities=19% Similarity=0.173 Sum_probs=55.5
Q ss_pred CcEEEccCCcCCCccc--c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCcc
Q 040410 57 LKELDFLFNKLSSEFS--C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNF 133 (171)
Q Consensus 57 L~~L~l~~~~~~~~~~--~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 133 (171)
|+.|++++|++.. +| . +++.|++++|.+. .+|.. ..+|+.|++++|.+. .+|.. ..+|+.|++++|.+
T Consensus 344 Lq~LdLS~N~Ls~-LP~lp~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~L 414 (788)
T PRK15387 344 LQELSVSDNQLAS-LPTLPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRL 414 (788)
T ss_pred cceEecCCCccCC-CCCCCcccceehhhccccc-cCccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcC
Confidence 4444444444442 22 2 4444444444444 23321 135666777776666 44542 24677777777777
Q ss_pred chhhhHHhhccccCceEecccCccccccCcccccccCC
Q 040410 134 FNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELSKEF 171 (171)
Q Consensus 134 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L 171 (171)
. .+|... .+|+.|++++|.+. .+|..+..+++|
T Consensus 415 s-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L 447 (788)
T PRK15387 415 T-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSE 447 (788)
T ss_pred C-CCCcch---hhhhhhhhccCccc-ccChHHhhccCC
Confidence 6 355432 35667788888876 577777666543
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.16 E-value=4.7e-12 Score=93.54 Aligned_cols=100 Identities=27% Similarity=0.294 Sum_probs=62.4
Q ss_pred CCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccC-CcCCCccc------c-ccceEe
Q 040410 9 QHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLF-NKLSSEFS------C-SLKRLF 79 (171)
Q Consensus 9 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~------~-~L~~L~ 79 (171)
+.+.++|..|.|+...+..|+.+++|++ |++.|.++...|..|.+++++..|-+.+ |+++ .+| + +++-|.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHh
Confidence 3456788888888877778888888888 8888888766677788888776666555 6665 333 3 444444
Q ss_pred cccccccccChhhhhcCcCCcEEEcccccc
Q 040410 80 LVSCNFWEKVPHSINNFARLQWYDLVFNKF 109 (171)
Q Consensus 80 l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~ 109 (171)
+.-|.+.-...+.+..++++..|.+.+|.+
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~ 176 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKI 176 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhh
Confidence 444444433333444444444444444443
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.15 E-value=3.4e-11 Score=91.83 Aligned_cols=146 Identities=35% Similarity=0.409 Sum_probs=79.4
Q ss_pred CCCCcEEEeecccccCCCCCccCCcc-hhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc----c-ccceEe
Q 040410 7 KKQHTYVRLQAKHYTGELPFLSGNLR-SLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS----C-SLKRLF 79 (171)
Q Consensus 7 l~~L~~L~L~~~~~~~~~~~~~~~l~-~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~-~L~~L~ 79 (171)
++.++.+++.++.++. ++.....+. +|+. ++++|.+. .+|..++.+++|+.|+++.|++....+ . .++.|+
T Consensus 115 ~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 115 LTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred ccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 4456666666666665 344444553 6666 66666665 555556666666666666666653333 3 566666
Q ss_pred cccccccccChhhhhcCcCCcEEEccccc-----------------------ccccccccccCCCCCceEecccCccchh
Q 040410 80 LVSCNFWEKVPHSINNFARLQWYDLVFNK-----------------------FSGELLASTKNLKSLEVLAINKCNFFNR 136 (171)
Q Consensus 80 l~~~~~~~~~~~~~~~l~~L~~l~l~~n~-----------------------~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 136 (171)
+++|++. .+|..+.....|+++.+++|+ +. .++..++.+.+++.|++++|.+. .
T Consensus 193 ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~ 269 (394)
T COG4886 193 LSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-S 269 (394)
T ss_pred ccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-eccchhccccccceecccccccc-c
Confidence 6666665 344443344445555555553 32 22344445555555555555554 2
Q ss_pred hhHHhhccccCceEecccCccc
Q 040410 137 ILFLLRNLIQLIILHLSQNSFR 158 (171)
Q Consensus 137 ~~~~~~~~~~L~~L~l~~n~~~ 158 (171)
++. ++...+++++++++|.+.
T Consensus 270 i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 270 ISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ccc-ccccCccCEEeccCcccc
Confidence 222 455555555555555554
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.09 E-value=8.3e-12 Score=89.74 Aligned_cols=120 Identities=21% Similarity=0.160 Sum_probs=60.7
Q ss_pred CcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc----c-ccceEecccc
Q 040410 10 HTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS----C-SLKRLFLVSC 83 (171)
Q Consensus 10 L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~-~L~~L~l~~~ 83 (171)
|+++||++|.|+. +.++..-++.++. ++++|.+. .+. .+..+++|+.||+++|.++.... + ++++|.++.|
T Consensus 286 LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 286 LTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN 362 (490)
T ss_pred hhhccccccchhh-hhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh
Confidence 4555566655554 3444555555555 66665554 222 25555556666666655543222 3 5555555555
Q ss_pred cccccChhhhhcCcCCcEEEcccccccc-cccccccCCCCCceEecccCccc
Q 040410 84 NFWEKVPHSINNFARLQWYDLVFNKFSG-ELLASTKNLKSLEVLAINKCNFF 134 (171)
Q Consensus 84 ~~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~ 134 (171)
.+. ...+++.+.+|..|++.+|.+.. .-...|++++.|+++.+-+|.+.
T Consensus 363 ~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 363 KIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 553 22344555555555555555542 11234555555555555555443
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.06 E-value=9.8e-11 Score=89.30 Aligned_cols=130 Identities=29% Similarity=0.357 Sum_probs=77.3
Q ss_pred ccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc----c-ccceE
Q 040410 5 AKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS----C-SLKRL 78 (171)
Q Consensus 5 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~-~L~~L 78 (171)
..+++|+.|++++|.++. ++...+..+.|+. ++++|.+. .+|..+.....|+++.+++|....... . .+..+
T Consensus 160 ~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l 237 (394)
T COG4886 160 RNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGL 237 (394)
T ss_pred hccccccccccCCchhhh-hhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhccccccc
Confidence 444555555555555544 2333334455555 55555554 444433333345555555553211111 2 44555
Q ss_pred ecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhH
Q 040410 79 FLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILF 139 (171)
Q Consensus 79 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 139 (171)
.+..|++. ..+..++.++.++.+++.+|.++ .++. ++...+++.++++++.+....+.
T Consensus 238 ~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 238 ELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ccCCceee-eccchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchh
Confidence 55555554 23567788889999999999998 5555 88999999999999988755444
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.98 E-value=4.2e-10 Score=82.04 Aligned_cols=155 Identities=16% Similarity=0.111 Sum_probs=107.4
Q ss_pred cccCCCCcEEEeecccccCCCCCcc----CCcchhhh-hcCCCccCCcC-------------CccCCCCCCCcEEEccCC
Q 040410 4 QAKKKQHTYVRLQAKHYTGELPFLS----GNLRSLKE-DLSKNNSSGEL-------------PTSIGNLFPLKELDFLFN 65 (171)
Q Consensus 4 ~~~l~~L~~L~L~~~~~~~~~~~~~----~~l~~L~~-~l~~~~~~~~~-------------~~~~~~l~~L~~L~l~~~ 65 (171)
+...+.|++++||.|.+....++.+ .+...|++ .+.+|.+.... -..+.+-++|+++...+|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 4456789999999999987666544 46688999 99999876321 222445678999999999
Q ss_pred cCCCccc---------c-ccceEecccccccc----cChhhhhcCcCCcEEEccccccccc----ccccccCCCCCceEe
Q 040410 66 KLSSEFS---------C-SLKRLFLVSCNFWE----KVPHSINNFARLQWYDLVFNKFSGE----LLASTKNLKSLEVLA 127 (171)
Q Consensus 66 ~~~~~~~---------~-~L~~L~l~~~~~~~----~~~~~~~~l~~L~~l~l~~n~~~~~----~~~~~~~l~~L~~L~ 127 (171)
++..... + .++.+++..|++.. ....++..+++|+.|++.+|.++.. +.+.++.+++|+.++
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence 8864332 4 78888888887742 2345667788888888888877632 344556777888888
Q ss_pred cccCccchhhhHHh-----hccccCceEecccCccc
Q 040410 128 INKCNFFNRILFLL-----RNLIQLIILHLSQNSFR 158 (171)
Q Consensus 128 l~~n~~~~~~~~~~-----~~~~~L~~L~l~~n~~~ 158 (171)
+++|.+...-..++ ...++|+.+.+.+|.+.
T Consensus 248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred ccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 88887654322222 22356777777777665
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.97 E-value=1e-10 Score=84.19 Aligned_cols=125 Identities=22% Similarity=0.187 Sum_probs=100.3
Q ss_pred Ccchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccceEecccccccccChhhhhcCcCCcEEEc
Q 040410 30 NLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDL 104 (171)
Q Consensus 30 ~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 104 (171)
.++.|.+ |+++|.++ .+-+++.-.|+++.|+++.|.+..... + +++.|++++|.++ .+..+-..+.++++|.+
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 5678889 99999987 677788888999999999998874433 5 8999999999887 45555567788999999
Q ss_pred ccccccccccccccCCCCCceEecccCccchhhh--HHhhccccCceEecccCcccc
Q 040410 105 VFNKFSGELLASTKNLKSLEVLAINKCNFFNRIL--FLLRNLIQLIILHLSQNSFRG 159 (171)
Q Consensus 105 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~~~L~~L~l~~n~~~~ 159 (171)
++|.+. . ...+.++.+|..||+.+|++.. +. ..+++++-|+++.+.+|++.+
T Consensus 360 a~N~iE-~-LSGL~KLYSLvnLDl~~N~Ie~-ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 360 AQNKIE-T-LSGLRKLYSLVNLDLSSNQIEE-LDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhHh-h-hhhhHhhhhheeccccccchhh-HHHhcccccccHHHHHhhcCCCccc
Confidence 999886 2 3567888999999999998862 22 347888889999999999874
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.97 E-value=4.8e-10 Score=62.89 Aligned_cols=60 Identities=32% Similarity=0.316 Sum_probs=53.4
Q ss_pred CCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcC
Q 040410 8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKL 67 (171)
Q Consensus 8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 67 (171)
++|++|++++|.++...+..|..+++|++ ++++|.+....+..|.++++|+++++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 57899999999999877778999999999 9999999855566899999999999999974
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.93 E-value=7.7e-10 Score=62.06 Aligned_cols=60 Identities=32% Similarity=0.278 Sum_probs=36.1
Q ss_pred CCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCcc
Q 040410 98 RLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSF 157 (171)
Q Consensus 98 ~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 157 (171)
+|++|++++|.+..-.+..+..+++|++|++++|.+....+..|..+++|++|++++|.+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 456666666666622224556666666666666666644445566666666666666653
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.92 E-value=1.1e-09 Score=74.08 Aligned_cols=110 Identities=25% Similarity=0.268 Sum_probs=41.0
Q ss_pred cCCccCCCCCCCcEEEccCCcCCCccc----c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccc-cC
Q 040410 46 ELPTSIGNLFPLKELDFLFNKLSSEFS----C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLAST-KN 119 (171)
Q Consensus 46 ~~~~~~~~l~~L~~L~l~~~~~~~~~~----~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~-~~ 119 (171)
..+. +.+..+++.|++.+|.++..-. + +++.|+++.|.+.. + +++..++.|++|++++|.++ .+.+.+ ..
T Consensus 11 ~~~~-~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~ 86 (175)
T PF14580_consen 11 QIAQ-YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRIS-SISEGLDKN 86 (175)
T ss_dssp --------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH
T ss_pred cccc-cccccccccccccccccccccchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCC-ccccchHHh
Confidence 3443 4455678999999999874322 5 89999999999984 3 36778899999999999998 555545 36
Q ss_pred CCCCceEecccCccchh-hhHHhhccccCceEecccCcccc
Q 040410 120 LKSLEVLAINKCNFFNR-ILFLLRNLIQLIILHLSQNSFRG 159 (171)
Q Consensus 120 l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~ 159 (171)
+++|++|++++|.+... --..+..+++|+.|++.+|++..
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 89999999999998642 11456788999999999999974
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=4e-10 Score=84.37 Aligned_cols=154 Identities=21% Similarity=0.130 Sum_probs=95.8
Q ss_pred cccCCCCcEEEeecccccCC--CCCccCCcchhhh-hcCCCccCCcCCcc-CCCCCCCcEEEccCCcCCCccc------c
Q 040410 4 QAKKKQHTYVRLQAKHYTGE--LPFLSGNLRSLKE-DLSKNNSSGELPTS-IGNLFPLKELDFLFNKLSSEFS------C 73 (171)
Q Consensus 4 ~~~l~~L~~L~L~~~~~~~~--~~~~~~~l~~L~~-~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~------~ 73 (171)
...+++++.|||+.|-+... +.....+|++|+. +++.|.+..-.... -..+++++.|.+++|.+++.-- +
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 34678888888888877543 2334567888888 88888875211111 2256788888888888874322 4
Q ss_pred -ccceEecccccccccChhhhhcCcCCcEEEccccccccccc--ccccCCCCCceEecccCccchh-hhH-----Hhhcc
Q 040410 74 -SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELL--ASTKNLKSLEVLAINKCNFFNR-ILF-----LLRNL 144 (171)
Q Consensus 74 -~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~--~~~~~l~~L~~L~l~~n~~~~~-~~~-----~~~~~ 144 (171)
+++.|++.+|............+..|+.|++++|.+- .++ ...+.++.|..|.++.|.+... .|+ .-...
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f 300 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTF 300 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhccc
Confidence 7777777777422222223334456788888877665 233 3456677777777777765421 111 12334
Q ss_pred ccCceEecccCccc
Q 040410 145 IQLIILHLSQNSFR 158 (171)
Q Consensus 145 ~~L~~L~l~~n~~~ 158 (171)
++|++|++..|++.
T Consensus 301 ~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 301 PKLEYLNISENNIR 314 (505)
T ss_pred ccceeeecccCccc
Confidence 67778888877774
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.65 E-value=3.8e-09 Score=77.13 Aligned_cols=154 Identities=18% Similarity=0.259 Sum_probs=95.3
Q ss_pred ccCCCCcEEEeecccccCC----CCCccCCcchhhh-hcCCCcc---CCcCCc-------cCCCCCCCcEEEccCCcCCC
Q 040410 5 AKKKQHTYVRLQAKHYTGE----LPFLSGNLRSLKE-DLSKNNS---SGELPT-------SIGNLFPLKELDFLFNKLSS 69 (171)
Q Consensus 5 ~~l~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~-~l~~~~~---~~~~~~-------~~~~l~~L~~L~l~~~~~~~ 69 (171)
-.+..++.++|++|.+... +...+.+.+.|+. ++++-.. ...+|+ .+...++|+++||+.|-+..
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 3567889999999988643 2334455566666 6654321 112333 33456789999999998765
Q ss_pred ccc---------c-ccceEecccccccccC-------------hhhhhcCcCCcEEEcccccccccccc----cccCCCC
Q 040410 70 EFS---------C-SLKRLFLVSCNFWEKV-------------PHSINNFARLQWYDLVFNKFSGELLA----STKNLKS 122 (171)
Q Consensus 70 ~~~---------~-~L~~L~l~~~~~~~~~-------------~~~~~~l~~L~~l~l~~n~~~~~~~~----~~~~l~~ 122 (171)
..+ + +|++|++.+|++.-.. ....+.-+.|+++..++|.+...... .+...+.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT 186 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence 544 5 8888888888775211 11223446788888888877633222 2234456
Q ss_pred CceEecccCccchh----hhHHhhccccCceEecccCccc
Q 040410 123 LEVLAINKCNFFNR----ILFLLRNLIQLIILHLSQNSFR 158 (171)
Q Consensus 123 L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~ 158 (171)
|+.+.++.|.+..+ +..++..+++|+.||++.|.++
T Consensus 187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 77777777765422 3345666777777777777664
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=1.8e-09 Score=80.92 Aligned_cols=152 Identities=25% Similarity=0.208 Sum_probs=100.9
Q ss_pred cCCCCcEEEeecccccCCCC-CccCCcchhhh-hcCCCccCCc--CCccCCCCCCCcEEEccCCcCCCccc------c-c
Q 040410 6 KKKQHTYVRLQAKHYTGELP-FLSGNLRSLKE-DLSKNNSSGE--LPTSIGNLFPLKELDFLFNKLSSEFS------C-S 74 (171)
Q Consensus 6 ~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~-~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~------~-~ 74 (171)
+++.|+.+.|.++.+..... .....+++++. |++.|-+..+ +-....++|+|+.|+++.|++.-.+. . .
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 46678888888887764221 24556788888 8888877632 22345578888888888888764333 4 7
Q ss_pred cceEecccccccccCh-hhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhh--HHhhccccCceEe
Q 040410 75 LKRLFLVSCNFWEKVP-HSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRIL--FLLRNLIQLIILH 151 (171)
Q Consensus 75 L~~L~l~~~~~~~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~~~L~~L~ 151 (171)
++.|.+++|+++..-- ...-.++++..|++.+|...........-+..|+.|++++|.+.. .+ ...+.++.|..|+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhh
Confidence 8888888888873222 233456888888888884222222333455678888888887753 33 4566777777777
Q ss_pred cccCccc
Q 040410 152 LSQNSFR 158 (171)
Q Consensus 152 l~~n~~~ 158 (171)
++.+.+.
T Consensus 278 ls~tgi~ 284 (505)
T KOG3207|consen 278 LSSTGIA 284 (505)
T ss_pred ccccCcc
Confidence 7777664
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.57 E-value=3.9e-08 Score=81.51 Aligned_cols=121 Identities=19% Similarity=0.142 Sum_probs=72.2
Q ss_pred CCcEEEeecccccCCCCCccCCcchhhh-hcCCCc--cCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEe
Q 040410 9 QHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNN--SSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLF 79 (171)
Q Consensus 9 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~ 79 (171)
..+.+.+-++.+... +... ..+.|++ -+..|. +....++.|..++.|++||+++|.-.+.+| + +||+|+
T Consensus 524 ~~rr~s~~~~~~~~~-~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHI-AGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred heeEEEEeccchhhc-cCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 445555555554331 1111 1124555 444443 321223336667777777777766555566 4 677777
Q ss_pred cccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCc
Q 040410 80 LVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCN 132 (171)
Q Consensus 80 l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 132 (171)
++++.+. .+|.+++++..|.+|++..+......|.....+.+|++|.+....
T Consensus 602 L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 602 LSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 7777776 678888888888888887766544555666667888888776543
No 40
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.47 E-value=3.4e-09 Score=84.23 Aligned_cols=118 Identities=24% Similarity=0.236 Sum_probs=72.9
Q ss_pred CcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc------cccceEeccc
Q 040410 10 HTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS------CSLKRLFLVS 82 (171)
Q Consensus 10 L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~------~~L~~L~l~~ 82 (171)
|.+.+.++|.+.. +..++.-++.++. +++.|++. ++. .+..+++|++||+++|.+. .+| |.|+.|++.+
T Consensus 166 L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLVL-MDESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccccchhhhhheeeeecc
Confidence 4555666666654 4556666777888 88888876 344 6777888888888888776 333 1566666666
Q ss_pred ccccccChhhhhcCcCCcEEEccccccccccc-ccccCCCCCceEecccCcc
Q 040410 83 CNFWEKVPHSINNFARLQWYDLVFNKFSGELL-ASTKNLKSLEVLAINKCNF 133 (171)
Q Consensus 83 ~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~ 133 (171)
|.++ ...++.++.+|+.||+++|-+.+.-- .-++.+..|..|.+.+|.+
T Consensus 242 N~l~--tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 242 NALT--TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cHHH--hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 6664 23356666667777777666553211 2234445566666666654
No 41
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.36 E-value=3.7e-08 Score=63.38 Aligned_cols=126 Identities=16% Similarity=0.142 Sum_probs=80.0
Q ss_pred hcCCCccCCcCCcc---CCCCCCCcEEEccCCcCCCccc-----c-ccceEecccccccccChhhhhcCcCCcEEEcccc
Q 040410 37 DLSKNNSSGELPTS---IGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFN 107 (171)
Q Consensus 37 ~l~~~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n 107 (171)
+++.|.+- .+++. +.....|...++++|.+....+ . .++++++..|.+. .+|..+..++.|+.++++.|
T Consensus 33 dLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 33 DLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFN 110 (177)
T ss_pred ccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccC
Confidence 55555542 23332 3334455666777776653222 2 4667777777776 68888888899999999999
Q ss_pred cccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccccccCcccc
Q 040410 108 KFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFE 166 (171)
Q Consensus 108 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~ 166 (171)
++. ..|+.+..+.++..|+..+|... ++|-.+--.+..-..+++++.+.+..+..+.
T Consensus 111 ~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klq 167 (177)
T KOG4579|consen 111 PLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQ 167 (177)
T ss_pred ccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccccc
Confidence 888 67888888888888888887765 5554422112233345677777665554443
No 42
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.35 E-value=2.1e-07 Score=66.46 Aligned_cols=157 Identities=20% Similarity=0.135 Sum_probs=108.1
Q ss_pred ccccCCCCcEEEeecccccCCCCCc----cCCcchhhh-hcCCCccCCcCCccCC-------------CCCCCcEEEccC
Q 040410 3 DQAKKKQHTYVRLQAKHYTGELPFL----SGNLRSLKE-DLSKNNSSGELPTSIG-------------NLFPLKELDFLF 64 (171)
Q Consensus 3 ~~~~l~~L~~L~L~~~~~~~~~~~~----~~~l~~L~~-~l~~~~~~~~~~~~~~-------------~l~~L~~L~l~~ 64 (171)
.+.+++.+..++||.|.|....|+. +++-..|++ .+++|.+.+....-++ +-|.|++++...
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 4567889999999999988766654 455677888 9999987533222232 457899999999
Q ss_pred CcCCCccc---------c-ccceEeccccccccc-----ChhhhhcCcCCcEEEccccccccc----ccccccCCCCCce
Q 040410 65 NKLSSEFS---------C-SLKRLFLVSCNFWEK-----VPHSINNFARLQWYDLVFNKFSGE----LLASTKNLKSLEV 125 (171)
Q Consensus 65 ~~~~~~~~---------~-~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~l~l~~n~~~~~----~~~~~~~l~~L~~ 125 (171)
|++..... . .++++.+..|.+.-. ...+..++.+|+.|++.+|.++.. +...++.++.|+.
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE 246 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE 246 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence 98763222 3 678888888877521 222445668899999999887632 3345567788899
Q ss_pred EecccCccchhhhHHh------hccccCceEecccCcccc
Q 040410 126 LAINKCNFFNRILFLL------RNLIQLIILHLSQNSFRG 159 (171)
Q Consensus 126 L~l~~n~~~~~~~~~~------~~~~~L~~L~l~~n~~~~ 159 (171)
|.+..|-++.+-..++ ...++|..|...+|...+
T Consensus 247 L~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 247 LRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred ccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 9998887654322222 223678888888887764
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.32 E-value=6.7e-07 Score=74.38 Aligned_cols=81 Identities=28% Similarity=0.320 Sum_probs=44.8
Q ss_pred ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecc
Q 040410 74 SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLS 153 (171)
Q Consensus 74 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 153 (171)
.|++|++++|.-.+.+|..++.+-+|+.|++++..+. .+|..+++++.|.+|++..+.....+|.....+++|++|.+.
T Consensus 572 ~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 572 LLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLP 650 (889)
T ss_pred ceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEee
Confidence 5556666655555555666666666666666665555 556666666666666655554433334444445555555544
Q ss_pred cC
Q 040410 154 QN 155 (171)
Q Consensus 154 ~n 155 (171)
..
T Consensus 651 ~s 652 (889)
T KOG4658|consen 651 RS 652 (889)
T ss_pred cc
Confidence 43
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.29 E-value=8.2e-08 Score=76.65 Aligned_cols=98 Identities=21% Similarity=0.231 Sum_probs=50.7
Q ss_pred CCcEEEccCCcCCCccc----c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEeccc
Q 040410 56 PLKELDFLFNKLSSEFS----C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINK 130 (171)
Q Consensus 56 ~L~~L~l~~~~~~~~~~----~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 130 (171)
+|.+.+.++|.+.-.-. + .+|.|+++.|+++..- .+..+++|++||+++|.+. .+|..--.-..|+.|.+.+
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhhheeeeecc
Confidence 34444455554432221 2 5666666666665322 5555666666666666665 4443111112366666666
Q ss_pred CccchhhhHHhhccccCceEecccCccc
Q 040410 131 CNFFNRILFLLRNLIQLIILHLSQNSFR 158 (171)
Q Consensus 131 n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 158 (171)
|.++. + ..+.++.+|..||+++|.+.
T Consensus 242 N~l~t-L-~gie~LksL~~LDlsyNll~ 267 (1096)
T KOG1859|consen 242 NALTT-L-RGIENLKSLYGLDLSYNLLS 267 (1096)
T ss_pred cHHHh-h-hhHHhhhhhhccchhHhhhh
Confidence 65542 2 33556666666666666554
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.25 E-value=8.1e-08 Score=73.90 Aligned_cols=120 Identities=23% Similarity=0.266 Sum_probs=60.7
Q ss_pred CCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccceEecccc
Q 040410 9 QHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLKRLFLVSC 83 (171)
Q Consensus 9 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~~L~l~~~ 83 (171)
.+..+++..|.+.. .-..+..+.+++. ++.+|.+. .+...+..+++|++|++++|.++...+ + .|+.|++.+|
T Consensus 73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGN 150 (414)
T ss_pred hHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccccchhhccchhhheeccC
Confidence 33444444444443 1223455555666 66666654 333335556666666666666654444 3 5566666666
Q ss_pred cccccChhhhhcCcCCcEEEccccccccccccc-ccCCCCCceEecccCcc
Q 040410 84 NFWEKVPHSINNFARLQWYDLVFNKFSGELLAS-TKNLKSLEVLAINKCNF 133 (171)
Q Consensus 84 ~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~~ 133 (171)
.+.. ...+..+..|+.+++++|.+... ... ...+.+++.+++..|.+
T Consensus 151 ~i~~--~~~~~~l~~L~~l~l~~n~i~~i-e~~~~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 151 LISD--ISGLESLKSLKLLDLSYNRIVDI-ENDELSELISLEELDLGGNSI 198 (414)
T ss_pred cchh--ccCCccchhhhcccCCcchhhhh-hhhhhhhccchHHHhccCCch
Confidence 6542 12333355666666666655522 211 34455555555555544
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.24 E-value=1.4e-07 Score=72.60 Aligned_cols=148 Identities=27% Similarity=0.208 Sum_probs=96.7
Q ss_pred cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccceE
Q 040410 4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLKRL 78 (171)
Q Consensus 4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~~L 78 (171)
+..+++++.+++..|.+.. +...+..+++|++ ++++|.++ .+. .+..++.|+.|++.+|.+..... + .++.+
T Consensus 91 l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~-~i~-~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKIT-KLE-GLSTLTLLKELNLSGNLISDISGLESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccchhh-cccchhhhhcchheeccccccc-ccc-chhhccchhhheeccCcchhccCCccchhhhcc
Confidence 6678889999999998876 2323778889999 99999887 444 37777889999999998874332 5 78888
Q ss_pred ecccccccccChhh-hhcCcCCcEEEcccccccccccccccCCCC------------------------CceEecccCcc
Q 040410 79 FLVSCNFWEKVPHS-INNFARLQWYDLVFNKFSGELLASTKNLKS------------------------LEVLAINKCNF 133 (171)
Q Consensus 79 ~l~~~~~~~~~~~~-~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~------------------------L~~L~l~~n~~ 133 (171)
++++|.+...-+ . ...+..++.+.+++|.+.. ...+..... |+.+++++|.+
T Consensus 168 ~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i 244 (414)
T KOG0531|consen 168 DLSYNRIVDIEN-DELSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRI 244 (414)
T ss_pred cCCcchhhhhhh-hhhhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCcc
Confidence 888888874333 1 3566677777777776541 111222222 45555555555
Q ss_pred chhhhHHhhccccCceEecccCccc
Q 040410 134 FNRILFLLRNLIQLIILHLSQNSFR 158 (171)
Q Consensus 134 ~~~~~~~~~~~~~L~~L~l~~n~~~ 158 (171)
. ..+..+..+..+..+++..|.+.
T Consensus 245 ~-~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 245 S-RSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred c-cccccccccccccccchhhcccc
Confidence 4 22234445555666666666654
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.23 E-value=5.1e-07 Score=64.57 Aligned_cols=153 Identities=20% Similarity=0.165 Sum_probs=78.0
Q ss_pred ccCCCCcEEEeecccccCC----CCCccCCcchhhh-hcCCCccC---Cc-------CCccCCCCCCCcEEEccCCcCCC
Q 040410 5 AKKKQHTYVRLQAKHYTGE----LPFLSGNLRSLKE-DLSKNNSS---GE-------LPTSIGNLFPLKELDFLFNKLSS 69 (171)
Q Consensus 5 ~~l~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~-~l~~~~~~---~~-------~~~~~~~l~~L~~L~l~~~~~~~ 69 (171)
..+..++.++||+|.|... +...+..-++|+. +++.-... .. +.+.+.++|+|+..+++.|-+..
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 3467889999999988653 2233344455555 55443211 11 22234456777777777777665
Q ss_pred ccc---------c-ccceEecccccccccChhhhh-------------cCcCCcEEEccccccccccccccc-----CCC
Q 040410 70 EFS---------C-SLKRLFLVSCNFWEKVPHSIN-------------NFARLQWYDLVFNKFSGELLASTK-----NLK 121 (171)
Q Consensus 70 ~~~---------~-~L~~L~l~~~~~~~~~~~~~~-------------~l~~L~~l~l~~n~~~~~~~~~~~-----~l~ 121 (171)
..| . .+.+|.+++|++.-..-..++ .-+.|+++..+.|++. ..+...+ .-.
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~ 185 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHE 185 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhc
Confidence 554 2 577777777766411111111 2245666666666654 2222111 113
Q ss_pred CCceEecccCccchh-----hhHHhhccccCceEecccCccc
Q 040410 122 SLEVLAINKCNFFNR-----ILFLLRNLIQLIILHLSQNSFR 158 (171)
Q Consensus 122 ~L~~L~l~~n~~~~~-----~~~~~~~~~~L~~L~l~~n~~~ 158 (171)
.|..+.+..|.++-+ +-..+.-+++|+.||++.|.++
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 455555555555422 0011222345555555555543
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.22 E-value=2.4e-07 Score=59.72 Aligned_cols=99 Identities=20% Similarity=0.208 Sum_probs=79.1
Q ss_pred CCcEEEccCCcCCCccc--------c-ccceEecccccccccChhhhhc-CcCCcEEEcccccccccccccccCCCCCce
Q 040410 56 PLKELDFLFNKLSSEFS--------C-SLKRLFLVSCNFWEKVPHSINN-FARLQWYDLVFNKFSGELLASTKNLKSLEV 125 (171)
Q Consensus 56 ~L~~L~l~~~~~~~~~~--------~-~L~~L~l~~~~~~~~~~~~~~~-l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~ 125 (171)
.+-.+++++|.+- .++ . .+..+++++|.+. .+|..|.. .+.+++++++.|.++ .+|..++.++.|+.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 3456678888654 233 2 6777899999998 56666654 468999999999998 78988999999999
Q ss_pred EecccCccchhhhHHhhccccCceEecccCccc
Q 040410 126 LAINKCNFFNRILFLLRNLIQLIILHLSQNSFR 158 (171)
Q Consensus 126 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 158 (171)
+.++.|.+. ..|..+..+.++-.|+..+|...
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 999999998 45777888888889998888775
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.13 E-value=3.4e-06 Score=43.78 Aligned_cols=36 Identities=31% Similarity=0.313 Sum_probs=17.8
Q ss_pred CCceEecccCccchhhhHHhhccccCceEecccCccc
Q 040410 122 SLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFR 158 (171)
Q Consensus 122 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 158 (171)
+|++|++++|.+. .+|..++++++|++|++++|.++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34444555555555555555554
No 50
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=5e-08 Score=70.45 Aligned_cols=148 Identities=16% Similarity=0.136 Sum_probs=83.6
Q ss_pred cCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCc-cC-CcCCccCCCCCCCcEEEccCCcCCCccc-------c-c
Q 040410 6 KKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNN-SS-GELPTSIGNLFPLKELDFLFNKLSSEFS-------C-S 74 (171)
Q Consensus 6 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~-~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~-------~-~ 74 (171)
.++.|+.|.+.++.+.+.+...+++-.+|+. +++.|. ++ ..+.--+.++..|..|++++|.+..... - +
T Consensus 208 ~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~ 287 (419)
T KOG2120|consen 208 QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISET 287 (419)
T ss_pred HHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchh
Confidence 4555666666666666655566666666777 666654 22 0112224456667777777776543222 2 5
Q ss_pred cceEeccccccc---ccChhhhhcCcCCcEEEccccc-ccccccccccCCCCCceEecccCccchhhhHH---hhccccC
Q 040410 75 LKRLFLVSCNFW---EKVPHSINNFARLQWYDLVFNK-FSGELLASTKNLKSLEVLAINKCNFFNRILFL---LRNLIQL 147 (171)
Q Consensus 75 L~~L~l~~~~~~---~~~~~~~~~l~~L~~l~l~~n~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~---~~~~~~L 147 (171)
+..|+++++.-. ..+..-...++++.+||++++. +.......+.+++-|++|.++.|..- +|.. +...++|
T Consensus 288 l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl 365 (419)
T KOG2120|consen 288 LTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSL 365 (419)
T ss_pred hhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcce
Confidence 666666665321 1122223456777777777653 34344455667777777777777532 3332 4555677
Q ss_pred ceEecccC
Q 040410 148 IILHLSQN 155 (171)
Q Consensus 148 ~~L~l~~n 155 (171)
.+||+.++
T Consensus 366 ~yLdv~g~ 373 (419)
T KOG2120|consen 366 VYLDVFGC 373 (419)
T ss_pred EEEEeccc
Confidence 77776553
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.12 E-value=4e-06 Score=43.52 Aligned_cols=36 Identities=28% Similarity=0.346 Sum_probs=23.4
Q ss_pred CCcEEEcccccccccccccccCCCCCceEecccCccc
Q 040410 98 RLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFF 134 (171)
Q Consensus 98 ~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 134 (171)
+|++|++++|.+. .+|..++++++|+.|++++|.++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 5667777777776 56666677777777777777665
No 52
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.89 E-value=3.8e-05 Score=58.58 Aligned_cols=75 Identities=20% Similarity=0.197 Sum_probs=44.2
Q ss_pred cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccccccceEeccc
Q 040410 4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSCSLKRLFLVS 82 (171)
Q Consensus 4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~ 82 (171)
+..+.+++.|++++|.++. +|.. ..+|++ .+++|.-...+|..+ .++|+.|++.+|.....+|-+|+.|.+..
T Consensus 48 ~~~~~~l~~L~Is~c~L~s-LP~L---P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~sLe~L~L~~ 121 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES-LPVL---PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPESVRSLEIKG 121 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc-cCCC---CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccccceEEeCC
Confidence 3456788899999887765 3421 234777 777654333556544 24788888887732223332555566554
Q ss_pred cc
Q 040410 83 CN 84 (171)
Q Consensus 83 ~~ 84 (171)
+.
T Consensus 122 n~ 123 (426)
T PRK15386 122 SA 123 (426)
T ss_pred CC
Confidence 43
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=1.7e-05 Score=57.66 Aligned_cols=153 Identities=17% Similarity=0.112 Sum_probs=86.8
Q ss_pred CCCCcEEEeecccccCC--CCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc------c-ccc
Q 040410 7 KKQHTYVRLQAKHYTGE--LPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS------C-SLK 76 (171)
Q Consensus 7 l~~L~~L~L~~~~~~~~--~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~------~-~L~ 76 (171)
.+.++.+||.+|.+++. +...+.++++|++ +++.|++...+...-..+.+|+++-+.+..+.+... + .++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 45667777877777542 3344567788888 888887763222111355677777777776654432 3 455
Q ss_pred eEeccccccc-----ccChhh------------------------hhcCcCCcEEEccccccccccc-ccccCCCCCceE
Q 040410 77 RLFLVSCNFW-----EKVPHS------------------------INNFARLQWYDLVFNKFSGELL-ASTKNLKSLEVL 126 (171)
Q Consensus 77 ~L~l~~~~~~-----~~~~~~------------------------~~~l~~L~~l~l~~n~~~~~~~-~~~~~l~~L~~L 126 (171)
+|+++.|+.. +...+. ...++++..+-+..|++...-. +.....+.+..|
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 6666655221 000000 0012445545455554432111 233345666677
Q ss_pred ecccCccchh-hhHHhhccccCceEecccCcccc
Q 040410 127 AINKCNFFNR-ILFLLRNLIQLIILHLSQNSFRG 159 (171)
Q Consensus 127 ~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~ 159 (171)
.++.+.+... ..+++..++.|+.|.+.++++..
T Consensus 230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 7887777642 22567788889999999888763
No 54
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=8.6e-07 Score=64.20 Aligned_cols=149 Identities=17% Similarity=0.127 Sum_probs=101.5
Q ss_pred CcEEEeecccccCC-CCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-------c-ccceEe
Q 040410 10 HTYVRLQAKHYTGE-LPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-------C-SLKRLF 79 (171)
Q Consensus 10 L~~L~L~~~~~~~~-~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-------~-~L~~L~ 79 (171)
++.+||+...++.. .-..++...+|+. .+.++.+.+.+-..+..-.+|+.++++.+.=-.... | .|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 66778887776532 1223456678888 888888876666667788899999999874222222 6 899999
Q ss_pred cccccccccChh-hhhcC-cCCcEEEccccc--ccc-cccccccCCCCCceEecccCccc-hhhhHHhhccccCceEecc
Q 040410 80 LVSCNFWEKVPH-SINNF-ARLQWYDLVFNK--FSG-ELLASTKNLKSLEVLAINKCNFF-NRILFLLRNLIQLIILHLS 153 (171)
Q Consensus 80 l~~~~~~~~~~~-~~~~l-~~L~~l~l~~n~--~~~-~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~ 153 (171)
+++|........ .+... ++|+.|+++++. +.. .+..-..+++.+.+||+++|... ...-.++.+.+.|++|.++
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence 999977533222 12221 578889998763 111 22223357889999999998653 3344567888999999999
Q ss_pred cCccc
Q 040410 154 QNSFR 158 (171)
Q Consensus 154 ~n~~~ 158 (171)
.|..-
T Consensus 347 RCY~i 351 (419)
T KOG2120|consen 347 RCYDI 351 (419)
T ss_pred hhcCC
Confidence 88753
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.66 E-value=9.1e-06 Score=66.17 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=8.1
Q ss_pred CCCCCcEEEccCCcCC
Q 040410 53 NLFPLKELDFLFNKLS 68 (171)
Q Consensus 53 ~l~~L~~L~l~~~~~~ 68 (171)
++|+|+.||+++++++
T Consensus 171 sFpNL~sLDIS~TnI~ 186 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNIS 186 (699)
T ss_pred ccCccceeecCCCCcc
Confidence 4455555555555444
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.58 E-value=0.00018 Score=54.99 Aligned_cols=112 Identities=16% Similarity=0.174 Sum_probs=69.8
Q ss_pred Ccchhhh-hcCCCccCCcCCccCCCCC-CCcEEEccCCcCCCccc---c-ccceEecccccccccChhhhhcCcCCcEEE
Q 040410 30 NLRSLKE-DLSKNNSSGELPTSIGNLF-PLKELDFLFNKLSSEFS---C-SLKRLFLVSCNFWEKVPHSINNFARLQWYD 103 (171)
Q Consensus 30 ~l~~L~~-~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~---~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 103 (171)
.+.+++. ++++|.+. .+| .+| +|+.|.+++|.-...+| . +|+.|.+.+|.....+|. +|+.|+
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP----~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP~------sLe~L~ 118 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLP----VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLPE------SVRSLE 118 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccC----CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccccccc------ccceEE
Confidence 4567778 88988776 666 233 69999999876555666 3 899999998843334554 355555
Q ss_pred cccccc--cccccccccCC------------------CCCceEecccCccchhhhHHhhccccCceEecccC
Q 040410 104 LVFNKF--SGELLASTKNL------------------KSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQN 155 (171)
Q Consensus 104 l~~n~~--~~~~~~~~~~l------------------~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 155 (171)
+..+.. -+.+|.++..+ .+|++|++++|... .+|..+- .+|+.|.++.+
T Consensus 119 L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 119 IKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred eCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 554432 12455444332 36777888777654 3343222 46777777665
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.45 E-value=0.0003 Score=48.49 Aligned_cols=98 Identities=21% Similarity=0.227 Sum_probs=71.4
Q ss_pred hhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEecccccccccC-hhhhhcCcCCcEEEc
Q 040410 33 SLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFLVSCNFWEKV-PHSINNFARLQWYDL 104 (171)
Q Consensus 33 ~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l~~~~~~~~~-~~~~~~l~~L~~l~l 104 (171)
.... |+++|.+. .++ .|..++.|.+|.+++|+++..-| . .+.+|.+.+|++.... ......++.|+.|.+
T Consensus 43 ~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchh-hcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 3445 88888875 444 47788899999999999986666 3 6899999999886221 123456788999999
Q ss_pred cccccccccc---ccccCCCCCceEecccCc
Q 040410 105 VFNKFSGELL---ASTKNLKSLEVLAINKCN 132 (171)
Q Consensus 105 ~~n~~~~~~~---~~~~~l~~L~~L~l~~n~ 132 (171)
-+|++...-- -.++.+++|+.||++.-.
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 9998874211 246788999999987643
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.25 E-value=0.00022 Score=58.34 Aligned_cols=126 Identities=25% Similarity=0.270 Sum_probs=84.0
Q ss_pred chhhh-hcCCCcc-CCcCCccCC-CCCCCcEEEccCCcCCCc-cc-----c-ccceEecccccccccChhhhhcCcCCcE
Q 040410 32 RSLKE-DLSKNNS-SGELPTSIG-NLFPLKELDFLFNKLSSE-FS-----C-SLKRLFLVSCNFWEKVPHSINNFARLQW 101 (171)
Q Consensus 32 ~~L~~-~l~~~~~-~~~~~~~~~-~l~~L~~L~l~~~~~~~~-~~-----~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 101 (171)
.+|++ +++|... ...+|..++ -+|+|+.|.+.+-.+... +. . +|+.|++++++++.. .+++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 56777 7777542 233444444 378899988887665322 12 4 788899999888743 67888888888
Q ss_pred EEcccccccc-cccccccCCCCCceEecccCccchh--hhHH----hhccccCceEecccCcccc
Q 040410 102 YDLVFNKFSG-ELLASTKNLKSLEVLAINKCNFFNR--ILFL----LRNLIQLIILHLSQNSFRG 159 (171)
Q Consensus 102 l~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~----~~~~~~L~~L~l~~n~~~~ 159 (171)
|.+.+-.+.. .--..+.++++|+.||+|....... +... -..+++|+.||+++..+.+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 8887766652 2224567889999999987654321 1111 2336889999999887754
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.19 E-value=0.00045 Score=47.63 Aligned_cols=95 Identities=19% Similarity=0.074 Sum_probs=44.7
Q ss_pred CcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCcc---c---c-ccceEecc
Q 040410 10 HTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEF---S---C-SLKRLFLV 81 (171)
Q Consensus 10 L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~---~---~-~L~~L~l~ 81 (171)
...+||++|.+.. -..+..++.|++ .+..|.++...|.--.-+++|+.|.+.+|.+.... | | +|++|.+-
T Consensus 44 ~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 44 FDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 3345555555432 223445555666 66666555222222223455666666665543211 1 4 56666655
Q ss_pred cccccccCh---hhhhcCcCCcEEEccc
Q 040410 82 SCNFWEKVP---HSINNFARLQWYDLVF 106 (171)
Q Consensus 82 ~~~~~~~~~---~~~~~l~~L~~l~l~~ 106 (171)
+|.++..-- .-+..+++|++||+..
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhh
Confidence 555542110 0123456666666643
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.85 E-value=0.0011 Score=47.33 Aligned_cols=55 Identities=25% Similarity=0.264 Sum_probs=28.9
Q ss_pred cCcCCcEEEcccccccccccccc---cCCCCCceEecccCccchh---hhHHhhccccCceEe
Q 040410 95 NFARLQWYDLVFNKFSGELLAST---KNLKSLEVLAINKCNFFNR---ILFLLRNLIQLIILH 151 (171)
Q Consensus 95 ~l~~L~~l~l~~n~~~~~~~~~~---~~l~~L~~L~l~~n~~~~~---~~~~~~~~~~L~~L~ 151 (171)
.+++|+++++++|.+.. +.++ ..+.+|..|+++.|..+.. --..+.-+++|++||
T Consensus 89 ~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 89 KAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 44667777777776642 3323 3445666777776654421 112234445666654
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.77 E-value=0.0012 Score=48.37 Aligned_cols=81 Identities=25% Similarity=0.288 Sum_probs=40.2
Q ss_pred ccceEecccccccc--cChhhhhcCcCCcEEEcccccccccccccc-cCCCCCceEecccCccch-hhhHHhhccccCce
Q 040410 74 SLKRLFLVSCNFWE--KVPHSINNFARLQWYDLVFNKFSGELLAST-KNLKSLEVLAINKCNFFN-RILFLLRNLIQLII 149 (171)
Q Consensus 74 ~L~~L~l~~~~~~~--~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~ 149 (171)
.++++++.+|.+++ .+.....+++.|++|+++.|.+.-. -+.+ ....+|+.|-+.+..+.- .....+..++.++.
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 55666666666541 1222334566777777777665421 1122 244566666665554321 12233444455555
Q ss_pred EecccC
Q 040410 150 LHLSQN 155 (171)
Q Consensus 150 L~l~~n 155 (171)
|+++.|
T Consensus 151 lHmS~N 156 (418)
T KOG2982|consen 151 LHMSDN 156 (418)
T ss_pred hhhccc
Confidence 555555
No 62
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.69 E-value=0.00076 Score=29.30 Aligned_cols=20 Identities=35% Similarity=0.376 Sum_probs=11.9
Q ss_pred CceEecccCccccccCccccc
Q 040410 147 LIILHLSQNSFRGRIKLDFEL 167 (171)
Q Consensus 147 L~~L~l~~n~~~~~~p~~~~~ 167 (171)
|++|++++|.+. .+|.+|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 566666666666 55655543
No 63
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.41 E-value=0.0016 Score=28.24 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=14.7
Q ss_pred CCcEEEeecccccCCCCCccCC
Q 040410 9 QHTYVRLQAKHYTGELPFLSGN 30 (171)
Q Consensus 9 ~L~~L~L~~~~~~~~~~~~~~~ 30 (171)
+|++|++++|.++ .+|..+++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4778888888887 46655554
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.31 E-value=0.00039 Score=50.36 Aligned_cols=95 Identities=23% Similarity=0.206 Sum_probs=67.0
Q ss_pred cchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccceEecccccccccCh-hhhhcCcCCcEEEc
Q 040410 31 LRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLKRLFLVSCNFWEKVP-HSINNFARLQWYDL 104 (171)
Q Consensus 31 l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~~L~l~~~~~~~~~~-~~~~~l~~L~~l~l 104 (171)
+.+++. +.-+|.+. ++. ....|+.|++|.|+-|.++..-| | .|++|++..|.+.+.-. ..+.++++|+.|.+
T Consensus 18 l~~vkKLNcwg~~L~-DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCcc-HHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 445555 66666665 333 35678899999999999886666 7 89999999998874322 24568899999999
Q ss_pred ccccccccccc-----cccCCCCCceEe
Q 040410 105 VFNKFSGELLA-----STKNLKSLEVLA 127 (171)
Q Consensus 105 ~~n~~~~~~~~-----~~~~l~~L~~L~ 127 (171)
..|+..+.-+. .+.-+++|+.||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 99987765443 223456666665
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.24 E-value=0.0026 Score=45.45 Aligned_cols=83 Identities=22% Similarity=0.233 Sum_probs=55.7
Q ss_pred ccceEecccccccccChhhhhcCcCCcEEEcccc--cccccccccccCCCCCceEecccCccchh-hhHHhhccccCceE
Q 040410 74 SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFN--KFSGELLASTKNLKSLEVLAINKCNFFNR-ILFLLRNLIQLIIL 150 (171)
Q Consensus 74 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n--~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L 150 (171)
.++.+.+.+..++. -..+..+++|+.|.++.| ++.+.++-..-.+++|+++.+++|.+... -...+..+.+|..|
T Consensus 44 ~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 44 ELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL 121 (260)
T ss_pred chhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence 55566655555542 224567788999999998 66665554444558999999999987621 11235666778888
Q ss_pred ecccCccc
Q 040410 151 HLSQNSFR 158 (171)
Q Consensus 151 ~l~~n~~~ 158 (171)
++.+|...
T Consensus 122 dl~n~~~~ 129 (260)
T KOG2739|consen 122 DLFNCSVT 129 (260)
T ss_pred hcccCCcc
Confidence 88887765
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.19 E-value=0.00076 Score=48.89 Aligned_cols=66 Identities=23% Similarity=0.090 Sum_probs=52.9
Q ss_pred cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCc--cCCCCCCCcEEEccCCcCCCccc
Q 040410 4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPT--SIGNLFPLKELDFLFNKLSSEFS 72 (171)
Q Consensus 4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~ 72 (171)
+.+++.|++|.|+-|.|+. -..+..+++|++ ++..|.+. ++-+ .+.++|+|+.|.+..|...+.-+
T Consensus 37 c~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAG 105 (388)
T ss_pred HHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccc
Confidence 3478899999999999986 345778899999 99999886 4433 47789999999999998876544
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.92 E-value=0.031 Score=35.54 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=7.0
Q ss_pred CCCCCCCcEEEccCC
Q 040410 51 IGNLFPLKELDFLFN 65 (171)
Q Consensus 51 ~~~l~~L~~L~l~~~ 65 (171)
|..+++++.+.+..+
T Consensus 31 F~~~~~l~~i~~~~~ 45 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN 45 (129)
T ss_dssp TTT-TT-SEEEESST
T ss_pred ccccccccccccccc
Confidence 444555666665543
No 68
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.15 E-value=0.0077 Score=41.65 Aligned_cols=80 Identities=19% Similarity=0.180 Sum_probs=38.5
Q ss_pred ccceEecccccccccChhhhhcCcCCcEEEcccccc-cccccccccCC-CCCceEecccCc-cchhhhHHhhccccCceE
Q 040410 74 SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKF-SGELLASTKNL-KSLEVLAINKCN-FFNRILFLLRNLIQLIIL 150 (171)
Q Consensus 74 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~-~~~~~~~~~~l-~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L 150 (171)
.++.++.++..+...--+.+..++.++.+.+.++.- .+..-+.++.. .+|+.|++++|. ++..-...+.++++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 456666666555544444455555555555555432 11112222222 466666666553 332222334555555555
Q ss_pred ecc
Q 040410 151 HLS 153 (171)
Q Consensus 151 ~l~ 153 (171)
.+.
T Consensus 182 ~l~ 184 (221)
T KOG3864|consen 182 HLY 184 (221)
T ss_pred Hhc
Confidence 443
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.00 E-value=0.018 Score=44.89 Aligned_cols=121 Identities=25% Similarity=0.211 Sum_probs=64.1
Q ss_pred cchhhh-hcCCCccCCc--CCccCCCCCCCcEEEccCC-cCCCccc---------c-ccceEeccccc-ccccChhhhhc
Q 040410 31 LRSLKE-DLSKNNSSGE--LPTSIGNLFPLKELDFLFN-KLSSEFS---------C-SLKRLFLVSCN-FWEKVPHSINN 95 (171)
Q Consensus 31 l~~L~~-~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~-~~~~~~~---------~-~L~~L~l~~~~-~~~~~~~~~~~ 95 (171)
.+.++. .+..+.-... .-+.....+.|+.++++++ ......+ + .++.+++..+. +++..-..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 455666 5555532222 2234556677788877763 1111111 4 67777777766 55444444433
Q ss_pred -CcCCcEEEccccc-ccccccccc-cCCCCCceEecccCccch--hhhHHhhccccCceEe
Q 040410 96 -FARLQWYDLVFNK-FSGELLAST-KNLKSLEVLAINKCNFFN--RILFLLRNLIQLIILH 151 (171)
Q Consensus 96 -l~~L~~l~l~~n~-~~~~~~~~~-~~l~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~ 151 (171)
+++|+.|.+..+. +++..-..+ ..+++|++|+++.|.... .+.....++++++.+.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~ 327 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELK 327 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhh
Confidence 5677777766665 443333333 345668888877776532 1223334455555544
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.96 E-value=0.11 Score=33.01 Aligned_cols=115 Identities=16% Similarity=0.105 Sum_probs=54.3
Q ss_pred cCCCCCCCcEEEccCCcCCCc----cc-c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCC
Q 040410 50 SIGNLFPLKELDFLFNKLSSE----FS-C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSL 123 (171)
Q Consensus 50 ~~~~l~~L~~L~l~~~~~~~~----~~-~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L 123 (171)
.|....+|+.+.+... +... +. + +++.+.+..+ +...-...+..+.+++.+.+.. .+..-....+..++++
T Consensus 7 ~F~~~~~l~~i~~~~~-~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPNT-IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETST---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECCC-eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 3556678888888743 3311 11 5 7888888764 5433344566777899998865 3331223456678899
Q ss_pred ceEecccCccchhhhHHhhccccCceEecccCccccccCcccccccC
Q 040410 124 EVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELSKE 170 (171)
Q Consensus 124 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~ 170 (171)
+.+.+..+ +...-...+..+ +++.+.+..+ +..--...|.++++
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~-~~~i~~~~F~~~~~ 127 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPSN-ITKIEENAFKNCTK 127 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TTB--SS----GGG----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECCC-ccEECCcccccccc
Confidence 99998765 432233456776 8888887753 22222344555444
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.24 E-value=0.0012 Score=51.79 Aligned_cols=154 Identities=22% Similarity=0.170 Sum_probs=89.1
Q ss_pred ccCCCCcEEEeecccccCCC----CCccCCc-chhhh-hcCCCccCC----cCCccCCCCCCCcEEEccCCcCCCcc---
Q 040410 5 AKKKQHTYVRLQAKHYTGEL----PFLSGNL-RSLKE-DLSKNNSSG----ELPTSIGNLFPLKELDFLFNKLSSEF--- 71 (171)
Q Consensus 5 ~~l~~L~~L~L~~~~~~~~~----~~~~~~l-~~L~~-~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~--- 71 (171)
....+|..|++++|.+++.. ...+... ..+++ .+..|.++. .+.+.+...+.++.++++.|.+....
T Consensus 112 ~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~ 191 (478)
T KOG4308|consen 112 KTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLV 191 (478)
T ss_pred cccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHH
Confidence 34556677777777776421 1222232 45555 666666542 23333445667777777777663111
Q ss_pred ----------cc-ccceEeccccccccc----ChhhhhcCcC-CcEEEccccccccc----ccccccCC-CCCceEeccc
Q 040410 72 ----------SC-SLKRLFLVSCNFWEK----VPHSINNFAR-LQWYDLVFNKFSGE----LLASTKNL-KSLEVLAINK 130 (171)
Q Consensus 72 ----------~~-~L~~L~l~~~~~~~~----~~~~~~~l~~-L~~l~l~~n~~~~~----~~~~~~~l-~~L~~L~l~~ 130 (171)
+. ++++|++.+|.++.. +...+...+. +..+++..|.+.+. +.+.+..+ ..++.++++.
T Consensus 192 l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~ 271 (478)
T KOG4308|consen 192 LSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSR 271 (478)
T ss_pred HhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhc
Confidence 12 577777777776522 1122334444 56677877776643 22334444 5678888888
Q ss_pred Cccchh----hhHHhhccccCceEecccCccc
Q 040410 131 CNFFNR----ILFLLRNLIQLIILHLSQNSFR 158 (171)
Q Consensus 131 n~~~~~----~~~~~~~~~~L~~L~l~~n~~~ 158 (171)
|.+... +...+.+++.++++.+++|.+.
T Consensus 272 nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 272 NSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred CCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 877643 4445566677888888888764
No 72
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.09 E-value=0.042 Score=24.09 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=7.3
Q ss_pred CCCceEecccCccchhh
Q 040410 121 KSLEVLAINKCNFFNRI 137 (171)
Q Consensus 121 ~~L~~L~l~~n~~~~~~ 137 (171)
++|+.|++++|.++++.
T Consensus 2 ~~L~~L~l~~n~i~~~g 18 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEG 18 (24)
T ss_dssp TT-SEEE-TSSBEHHHH
T ss_pred CCCCEEEccCCcCCHHH
Confidence 34555555555554433
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.73 E-value=0.049 Score=21.86 Aligned_cols=10 Identities=40% Similarity=0.438 Sum_probs=3.5
Q ss_pred CcEEEccccc
Q 040410 99 LQWYDLVFNK 108 (171)
Q Consensus 99 L~~l~l~~n~ 108 (171)
|+.|++++|.
T Consensus 3 L~~L~l~~n~ 12 (17)
T PF13504_consen 3 LRTLDLSNNR 12 (17)
T ss_dssp -SEEEETSS-
T ss_pred cCEEECCCCC
Confidence 4444444444
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.71 E-value=0.00097 Score=47.17 Aligned_cols=84 Identities=20% Similarity=0.101 Sum_probs=63.0
Q ss_pred CCCCCCCcEEEccCCcCCCccc----c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCce
Q 040410 51 IGNLFPLKELDFLFNKLSSEFS----C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEV 125 (171)
Q Consensus 51 ~~~l~~L~~L~l~~~~~~~~~~----~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~ 125 (171)
+..+...+.||++.|++-.... + .+..++++.|.+- ..|..++....++.+++..|..+ ..|.+++..+++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 5566778888888886542222 4 6777777777776 67888888888888888888777 77888999899999
Q ss_pred EecccCccchh
Q 040410 126 LAINKCNFFNR 136 (171)
Q Consensus 126 L~l~~n~~~~~ 136 (171)
++.-.+.+...
T Consensus 116 ~e~k~~~~~~~ 126 (326)
T KOG0473|consen 116 NEQKKTEFFRK 126 (326)
T ss_pred hhhccCcchHH
Confidence 88888876543
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.76 E-value=0.008 Score=42.71 Aligned_cols=61 Identities=18% Similarity=0.048 Sum_probs=47.2
Q ss_pred CCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCC
Q 040410 7 KKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSS 69 (171)
Q Consensus 7 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 69 (171)
++.+.+++++.|.+.- .|.+++++..+++ +.+.|..+ ..|.+++..+.+++++.-.+.+..
T Consensus 64 ~t~~~rl~~sknq~~~-~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 64 LTRLVRLDLSKNQIKF-LPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFFR 125 (326)
T ss_pred HHHHHHHhccHhhHhh-ChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcchH
Confidence 4445555666555543 6888888888999 88888887 889999999999999998887653
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.41 E-value=0.1 Score=23.28 Aligned_cols=17 Identities=6% Similarity=-0.003 Sum_probs=13.0
Q ss_pred CCCCcEEEeecccccCC
Q 040410 7 KKQHTYVRLQAKHYTGE 23 (171)
Q Consensus 7 l~~L~~L~L~~~~~~~~ 23 (171)
+++|++|+|++|.+...
T Consensus 1 L~~L~~L~L~~N~l~~l 17 (26)
T smart00370 1 LPNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCCEEECCCCcCCcC
Confidence 46788888888888764
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.41 E-value=0.1 Score=23.28 Aligned_cols=17 Identities=6% Similarity=-0.003 Sum_probs=13.0
Q ss_pred CCCCcEEEeecccccCC
Q 040410 7 KKQHTYVRLQAKHYTGE 23 (171)
Q Consensus 7 l~~L~~L~L~~~~~~~~ 23 (171)
+++|++|+|++|.+...
T Consensus 1 L~~L~~L~L~~N~l~~l 17 (26)
T smart00369 1 LPNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCCEEECCCCcCCcC
Confidence 46788888888888764
No 78
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=89.21 E-value=0.4 Score=37.47 Aligned_cols=105 Identities=20% Similarity=0.187 Sum_probs=69.1
Q ss_pred CCCCcEEEccCCcCCCc---cc----c-ccceEecccc-cccccCh----hhhhcCcCCcEEEccccc-ccccccccccC
Q 040410 54 LFPLKELDFLFNKLSSE---FS----C-SLKRLFLVSC-NFWEKVP----HSINNFARLQWYDLVFNK-FSGELLASTKN 119 (171)
Q Consensus 54 l~~L~~L~l~~~~~~~~---~~----~-~L~~L~l~~~-~~~~~~~----~~~~~l~~L~~l~l~~n~-~~~~~~~~~~~ 119 (171)
.+.|+.+.+.++.-... .+ + .++.|+++.+ ......+ .....+.+++.+++..+. +++..-..++.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 57788888877643322 23 5 8999999873 2211111 123345789999999887 66555555554
Q ss_pred -CCCCceEecccCc-cchh-hhHHhhccccCceEecccCccc
Q 040410 120 -LKSLEVLAINKCN-FFNR-ILFLLRNLIQLIILHLSQNSFR 158 (171)
Q Consensus 120 -l~~L~~L~l~~n~-~~~~-~~~~~~~~~~L~~L~l~~n~~~ 158 (171)
+++|+.|.+..|. ++.. +-.....+++|++|+++++...
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 6799999988777 4433 3344566788999999987653
No 79
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=85.26 E-value=1.1 Score=20.43 Aligned_cols=15 Identities=20% Similarity=0.231 Sum_probs=9.0
Q ss_pred CCCceEecccCccch
Q 040410 121 KSLEVLAINKCNFFN 135 (171)
Q Consensus 121 ~~L~~L~l~~n~~~~ 135 (171)
++|++|++++|.+..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 356666666666653
No 80
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=84.98 E-value=0.78 Score=20.65 Aligned_cols=16 Identities=6% Similarity=-0.014 Sum_probs=12.6
Q ss_pred CCCCcEEEeecccccC
Q 040410 7 KKQHTYVRLQAKHYTG 22 (171)
Q Consensus 7 l~~L~~L~L~~~~~~~ 22 (171)
+++|+.|+|+.|.|+.
T Consensus 1 L~~L~~L~L~~NkI~~ 16 (26)
T smart00365 1 LTNLEELDLSQNKIKK 16 (26)
T ss_pred CCccCEEECCCCccce
Confidence 4678889998888854
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.78 E-value=0.24 Score=34.53 Aligned_cols=59 Identities=24% Similarity=0.296 Sum_probs=44.2
Q ss_pred CCcEEEcccccccccccccccCCCCCceEecccCccch-hhhHHhhc-cccCceEecccCc
Q 040410 98 RLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFN-RILFLLRN-LIQLIILHLSQNS 156 (171)
Q Consensus 98 ~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~-~~~L~~L~l~~n~ 156 (171)
.++.++-++..+....-+.+.++++++.|.+.+|...+ .--+.+++ .++|+.|+++.|.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~ 162 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCP 162 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCC
Confidence 47888888888887777888899999999998886433 22223333 4789999999775
No 82
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=81.86 E-value=1 Score=20.28 Aligned_cols=18 Identities=22% Similarity=0.218 Sum_probs=13.2
Q ss_pred ccCceEecccCccccccCc
Q 040410 145 IQLIILHLSQNSFRGRIKL 163 (171)
Q Consensus 145 ~~L~~L~l~~n~~~~~~p~ 163 (171)
++|++|++++|++. .+|.
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35788888888887 4564
No 83
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=78.59 E-value=2.1 Score=33.37 Aligned_cols=126 Identities=22% Similarity=0.239 Sum_probs=66.9
Q ss_pred Ccchhhh-hcCCCccCCcCCc-c-CCCCCCCcEEEccCCcCCCcc---c----c-ccceEeccccccccc--ChhhhhcC
Q 040410 30 NLRSLKE-DLSKNNSSGELPT-S-IGNLFPLKELDFLFNKLSSEF---S----C-SLKRLFLVSCNFWEK--VPHSINNF 96 (171)
Q Consensus 30 ~l~~L~~-~l~~~~~~~~~~~-~-~~~l~~L~~L~l~~~~~~~~~---~----~-~L~~L~l~~~~~~~~--~~~~~~~l 96 (171)
...+|+. +.+++...++.+- . -...++|+.+.+..|+..+.. + + .|+.+++..+..... +.+--...
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 3566777 7666654322211 1 224578888888877632111 1 4 677777766654311 22222345
Q ss_pred cCCcEEEcccccc-ccc----ccccccCCCCCceEecccCccchh-hhHHhhccccCceEecccC
Q 040410 97 ARLQWYDLVFNKF-SGE----LLASTKNLKSLEVLAINKCNFFNR-ILFLLRNLIQLIILHLSQN 155 (171)
Q Consensus 97 ~~L~~l~l~~n~~-~~~----~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n 155 (171)
+.++.+.++.+.. ++. +...-+.+..+..+.++++....+ ...-+.++++|+.+++-.+
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 6777777775532 211 122224556677777777765422 2234556667777665443
No 84
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=75.44 E-value=0.12 Score=40.91 Aligned_cols=16 Identities=38% Similarity=0.372 Sum_probs=8.5
Q ss_pred CCCCCcEEEccCCcCC
Q 040410 53 NLFPLKELDFLFNKLS 68 (171)
Q Consensus 53 ~l~~L~~L~l~~~~~~ 68 (171)
..+.|..+++++|.+.
T Consensus 113 t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 113 TLPTLGQLDLSGNNLG 128 (478)
T ss_pred ccccHhHhhcccCCCc
Confidence 3455555555555554
No 85
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=60.69 E-value=7.2 Score=17.09 Aligned_cols=12 Identities=33% Similarity=0.205 Sum_probs=7.6
Q ss_pred CCCcEEEccCCc
Q 040410 55 FPLKELDFLFNK 66 (171)
Q Consensus 55 ~~L~~L~l~~~~ 66 (171)
++|+.|++++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 456666666664
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=41.25 E-value=25 Score=28.69 Aligned_cols=61 Identities=16% Similarity=0.122 Sum_probs=34.7
Q ss_pred ccceEeccccccccc--ChhhhhcCcCCcEEEcccccccccccccccCC--CCCceEecccCccc
Q 040410 74 SLKRLFLVSCNFWEK--VPHSINNFARLQWYDLVFNKFSGELLASTKNL--KSLEVLAINKCNFF 134 (171)
Q Consensus 74 ~L~~L~l~~~~~~~~--~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l--~~L~~L~l~~n~~~ 134 (171)
.+..+++++|++... +..-....+++..|+|++|...-....++.++ .-|++|-+.+|.+.
T Consensus 219 ~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 219 EILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred ceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 566677777776522 12222345788888888883221222333333 34677878888764
No 87
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=27.51 E-value=45 Score=32.79 Aligned_cols=29 Identities=28% Similarity=0.233 Sum_probs=13.4
Q ss_pred eecccccCCCCCccCCcchhhh-hcCCCcc
Q 040410 15 LQAKHYTGELPFLSGNLRSLKE-DLSKNNS 43 (171)
Q Consensus 15 L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~ 43 (171)
|++|.++...+..|..+.+|+. +|.+|.+
T Consensus 2 LSnN~LstLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 2 ISNNKISTIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCcCCccChHHhccCCCceEEEeeCCcc
Confidence 4444444433334444445555 5555544
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=24.69 E-value=56 Score=26.77 Aligned_cols=12 Identities=42% Similarity=0.384 Sum_probs=6.9
Q ss_pred CCCCcEEEccCC
Q 040410 54 LFPLKELDFLFN 65 (171)
Q Consensus 54 l~~L~~L~l~~~ 65 (171)
.|+|+.|+|+.|
T Consensus 243 apklk~L~LS~N 254 (585)
T KOG3763|consen 243 APKLKTLDLSHN 254 (585)
T ss_pred cchhheeecccc
Confidence 455566666655
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.83 E-value=73 Score=31.51 Aligned_cols=30 Identities=20% Similarity=0.099 Sum_probs=15.6
Q ss_pred cccccccccChhhhhcCcCCcEEEcccccc
Q 040410 80 LVSCNFWEKVPHSINNFARLQWYDLVFNKF 109 (171)
Q Consensus 80 l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~ 109 (171)
|++|++...-+..|..+++|+.|+|++|++
T Consensus 2 LSnN~LstLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 2 ISNNKISTIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCcCCccChHHhccCCCceEEEeeCCcc
Confidence 344444433334555556666666666554
Done!